CCfits/0000755000225700000360000000000011667511122011521 5ustar cagordonlheaCCfits/config/0000755000225700000360000000000011667501507012774 5ustar cagordonlheaCCfits/config/m4/0000755000225700000360000000000011667501507013314 5ustar cagordonlheaCCfits/config/m4/ac_check_package.m40000644000225700000360000000473707657516150016770 0ustar cagordonlheadnl @synopsis AC_CHECK_PACKAGE(PACKAGE, FUNCTION, LIBRARY, HEADERFILE [, ACTION-IF-FOUND [, ACTION-IF-NOT-FOUND]]) dnl dnl Provides --with-PACKAGE, --with-PACKAGE-include and --with-PACKAGE-libdir dnl options to configure. Supports the now standard --with-PACKAGE=DIR dnl approach where the package's include dir and lib dir are underneath DIR, dnl but also allows the include and lib directories to be specified seperately dnl dnl adds the extra -Ipath to CPPFLAGS if needed dnl adds extra -Lpath and -Rpath to LD_FLAGS if needed dnl searches for the FUNCTION in the LIBRARY with dnl AC_CHECK_LIBRARY and thus adds the lib to LIBS dnl dnl defines HAVE_PKG_PACKAGE if it is found, (where PACKAGE in the dnl HAVE_PKG_PACKAGE is replaced with the actual first parameter passed) dnl note that autoheader will complain of not having the HAVE_PKG_PACKAGE and you dnl will have to add it to acconfig.h manually dnl dnl @version $Id: ac_check_package.m4,v 3.5 2003/05/11 18:54:32 pfkeb Exp $ dnl @author Paul_Kunz@slac.stanford.edu modified ac_caolan_check_package.m4 for all languages dnl AC_DEFUN([AC_CHECK_PACKAGE], [ AC_ARG_WITH($1, [ --with-$1[=DIR] root directory of $1 installation], with_$1=$withval if test "${with_$1}" != yes; then $1_include="$withval/include" $1_libdir="$withval/lib" fi, $1_include="/usr/local/cfitsio/include" $1_libdir="/usr/local/cfitsio/lib" ) AC_ARG_WITH($1-include, [ --with-$1-include=DIR specify exact include dir for $1 headers], $1_include="$withval") AC_ARG_WITH($1-libdir, [ --with-$1-libdir=DIR specify exact library dir for $1 library --without-$1 disables $1 usage completely], $1_libdir="$withval") if test "${with_$1}" != no ; then OLD_LIBS=$LIBS OLD_LDFLAGS=$LDFLAGS OLD_CPPFLAGS=$CPPFLAGS if test "${$1_libdir}" ; then LDFLAGS="$LDFLAGS -L${$1_libdir}" RDFLAGS="${$1_libdir}" fi if test "${$1_include}" ; then CPPFLAGS="$CPPFLAGS -I${$1_include}" fi AC_CHECK_LIB($3,$2,,no_good=yes) AC_CHECK_HEADER($4,,no_good=yes) if test "$no_good" = yes; then dnl broken ifelse([$6], , , [$6]) LIBS=$OLD_LIBS LDFLAGS=$OLD_LDFLAGS CPPFLAGS=$OLD_CPPFLAGS else dnl fixed ifelse([$5], , , [$5]) AC_DEFINE(HAVE_PKG_$1, 1, Define if you have the package ) AC_SUBST(RDFLAGS) fi fi ]) CCfits/config/m4/ac_compile_ansi.m40000644000225700000360000000163607503644030016662 0ustar cagordonlheadnl @synopsis AC_COMPILE_ANSI dnl dnl Set the ansi flag for gnu compilers dnl This macro must be put after AC_PROG_CC and AC_PROG_CXX in dnl configure.in dnl dnl @version $Id: ac_compile_ansi.m4,v 3.0 2002/06/18 14:47:52 dorman Exp $ dnl @author adapted by Ben Dorman (ben.dorman@gsfc.nasa.gov) from AC_COMPILE_WARNINGS originally by Loic Dachary dnl AC_DEFUN([AC_COMPILE_ANSI], [AC_MSG_CHECKING(ansi C/C++ option) if test -n "$CXX" then if test "$GXX" = "yes" then ac_compile_ansi_opt='-ansi' fi CXXFLAGS="$CXXFLAGS $ac_compile_ansi_opt" ac_compile_ansi_msg="$ac_compile_ansi_opt for C++" fi if test -n "$CC" then if test "$GCC" = "yes" then ac_compile_ansi_opt='-ansi' fi CFLAGS="$CFLAGS $ac_compile_ansi_opt" ac_compile_ansi_msg="$ac_compile_ansi_msg $ac_compile_ansi_opt for C" fi AC_MSG_RESULT($ac_compile_ansi_msg) unset ac_compile_ansi_msg unset ac_compile_ansi_opt ]) CCfits/config/m4/ac_compile_warnings.m40000644000225700000360000000214507503644031017555 0ustar cagordonlheadnl @synopsis AC_COMPILE_WARNINGS dnl dnl Set the maximum warning verbosity according to compiler used. dnl Currently supports g++ and gcc. dnl This macro must be put after AC_PROG_CC and AC_PROG_CXX in dnl configure.in dnl dnl @version $Id: ac_compile_warnings.m4,v 3.0 2002/06/18 14:47:53 dorman Exp $ dnl @author Loic Dachary modified by Ben Dorman (ben.dorman@gsfc.nasa.gov) to add verbose options for SunPro CC dnl AC_DEFUN([AC_COMPILE_WARNINGS], [AC_MSG_CHECKING(maximum warning verbosity option) if test -n "$CXX" then if test "$GXX" = "yes" then ac_compile_warnings_opt='-Wall' elif test "$CXX" = "CC" then ac_compile_warnings_opt='+w2' fi CXXFLAGS="$CXXFLAGS $ac_compile_warnings_opt" ac_compile_warnings_msg="$ac_compile_warnings_opt for C++" fi if test -n "$CC" then if test "$GCC" = "yes" then ac_compile_warnings_opt='-Wall' fi CFLAGS="$CFLAGS $ac_compile_warnings_opt" ac_compile_warnings_msg="$ac_compile_warnings_msg $ac_compile_warnings_opt for C" fi AC_MSG_RESULT($ac_compile_warnings_msg) unset ac_compile_warnings_msg unset ac_compile_warnings_opt ]) CCfits/config/m4/ac_cxx_have_valarray.m40000644000225700000360000000131507503644032017722 0ustar cagordonlheadnl @synopsis AC_CXX_HAVE_VALARRAY dnl dnl If the compiler has valarray, define HAVE_VALARRAY. dnl dnl @version $Id: ac_cxx_have_valarray.m4,v 3.0 2002/06/18 14:47:54 dorman Exp $ dnl @author Luc Maisonobe dnl AC_DEFUN([AC_CXX_HAVE_VALARRAY], [AC_CACHE_CHECK(whether the compiler has valarray, ac_cv_cxx_have_valarray, [AC_REQUIRE([AC_CXX_NAMESPACES]) AC_LANG_SAVE AC_LANG_CPLUSPLUS AC_TRY_COMPILE([#include #ifdef HAVE_NAMESPACES using namespace std; #endif],[valarray x(100); return 0;], ac_cv_cxx_have_valarray=yes, ac_cv_cxx_have_valarray=no) AC_LANG_RESTORE ]) if test "$ac_cv_cxx_have_valarray" = yes; then AC_DEFINE(HAVE_VALARRAY,,[define if the compiler has valarray]) fi ]) CCfits/config/m4/ac_cxx_namespaces.m40000644000225700000360000000131007503644033017211 0ustar cagordonlheadnl @synopsis AC_CXX_NAMESPACES dnl dnl If the compiler can prevent names clashes using namespaces, define dnl HAVE_NAMESPACES. dnl dnl @version $Id: ac_cxx_namespaces.m4,v 3.0 2002/06/18 14:47:55 dorman Exp $ dnl @author Luc Maisonobe dnl AC_DEFUN([AC_CXX_NAMESPACES], [AC_CACHE_CHECK(whether the compiler implements namespaces, ac_cv_cxx_namespaces, [AC_LANG_SAVE AC_LANG_CPLUSPLUS AC_TRY_COMPILE([namespace Outer { namespace Inner { int i = 0; }}], [using namespace Outer::Inner; return i;], ac_cv_cxx_namespaces=yes, ac_cv_cxx_namespaces=no) AC_LANG_RESTORE ]) if test "$ac_cv_cxx_namespaces" = yes; then AC_DEFINE(HAVE_NAMESPACES,,[define if the compiler implements namespaces]) fi ]) CCfits/config/m4/pfk_cxx_lib_path.m40000644000225700000360000000120510521752162017051 0ustar cagordonlheadnl @synopsis PFK_CXX_LIB_PATH dnl dnl Sets the output variable CXXLIB_PATH to the path of the Standard C++ dnl library used by the compiler. Basically if $CXX is found in say dnl `/usr/local/bin' then the assumtion is that its library is found in dnl `/usr/local/lib'. dnl dnl @version $Id: pfk_cxx_lib_path.m4,v 3.1 2006/10/31 22:55:46 irby Exp $ dnl @author Paul_Kunz@slac.stanford.edu dnl AC_DEFUN([PFK_CXX_LIB_PATH], [ AC_PATH_PROG(pfk_cxx_lib_path, $CXX, $CXX ) AC_MSG_CHECKING(standard C++ library path) CXX_LIB_PATH=`dirname $pfk_cxx_lib_path | sed -e "s/bin/lib/"` AC_MSG_RESULT($CXX_LIB_PATH ) AC_SUBST(CXX_LIB_PATH)dnl ]) CCfits/config/config.guess0000755000225700000360000012450410521752453015316 0ustar cagordonlhea#! /bin/sh # Attempt to guess a canonical system name. # Copyright (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999, # 2000, 2001, 2002, 2003, 2004 Free Software Foundation, Inc. timestamp='2004-09-07' # This file is free software; you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU # General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. # # As a special exception to the GNU General Public License, if you # distribute this file as part of a program that contains a # configuration script generated by Autoconf, you may include it under # the same distribution terms that you use for the rest of that program. # Originally written by Per Bothner . # Please send patches to . Submit a context # diff and a properly formatted ChangeLog entry. # # This script attempts to guess a canonical system name similar to # config.sub. If it succeeds, it prints the system name on stdout, and # exits with 0. Otherwise, it exits with 1. # # The plan is that this can be called by configure scripts if you # don't specify an explicit build system type. me=`echo "$0" | sed -e 's,.*/,,'` usage="\ Usage: $0 [OPTION] Output the configuration name of the system \`$me' is run on. Operation modes: -h, --help print this help, then exit -t, --time-stamp print date of last modification, then exit -v, --version print version number, then exit Report bugs and patches to ." version="\ GNU config.guess ($timestamp) Originally written by Per Bothner. Copyright (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE." help=" Try \`$me --help' for more information." # Parse command line while test $# -gt 0 ; do case $1 in --time-stamp | --time* | -t ) echo "$timestamp" ; exit 0 ;; --version | -v ) echo "$version" ; exit 0 ;; --help | --h* | -h ) echo "$usage"; exit 0 ;; -- ) # Stop option processing shift; break ;; - ) # Use stdin as input. break ;; -* ) echo "$me: invalid option $1$help" >&2 exit 1 ;; * ) break ;; esac done if test $# != 0; then echo "$me: too many arguments$help" >&2 exit 1 fi trap 'exit 1' 1 2 15 # CC_FOR_BUILD -- compiler used by this script. Note that the use of a # compiler to aid in system detection is discouraged as it requires # temporary files to be created and, as you can see below, it is a # headache to deal with in a portable fashion. # Historically, `CC_FOR_BUILD' used to be named `HOST_CC'. We still # use `HOST_CC' if defined, but it is deprecated. # Portable tmp directory creation inspired by the Autoconf team. set_cc_for_build=' trap "exitcode=\$?; (rm -f \$tmpfiles 2>/dev/null; rmdir \$tmp 2>/dev/null) && exit \$exitcode" 0 ; trap "rm -f \$tmpfiles 2>/dev/null; rmdir \$tmp 2>/dev/null; exit 1" 1 2 13 15 ; : ${TMPDIR=/tmp} ; { tmp=`(umask 077 && mktemp -d -q "$TMPDIR/cgXXXXXX") 2>/dev/null` && test -n "$tmp" && test -d "$tmp" ; } || { test -n "$RANDOM" && tmp=$TMPDIR/cg$$-$RANDOM && (umask 077 && mkdir $tmp) ; } || { tmp=$TMPDIR/cg-$$ && (umask 077 && mkdir $tmp) && echo "Warning: creating insecure temp directory" >&2 ; } || { echo "$me: cannot create a temporary directory in $TMPDIR" >&2 ; exit 1 ; } ; dummy=$tmp/dummy ; tmpfiles="$dummy.c $dummy.o $dummy.rel $dummy" ; case $CC_FOR_BUILD,$HOST_CC,$CC in ,,) echo "int x;" > $dummy.c ; for c in cc gcc c89 c99 ; do if ($c -c -o $dummy.o $dummy.c) >/dev/null 2>&1 ; then CC_FOR_BUILD="$c"; break ; fi ; done ; if test x"$CC_FOR_BUILD" = x ; then CC_FOR_BUILD=no_compiler_found ; fi ;; ,,*) CC_FOR_BUILD=$CC ;; ,*,*) CC_FOR_BUILD=$HOST_CC ;; esac ;' # This is needed to find uname on a Pyramid OSx when run in the BSD universe. # (ghazi@noc.rutgers.edu 1994-08-24) if (test -f /.attbin/uname) >/dev/null 2>&1 ; then PATH=$PATH:/.attbin ; export PATH fi UNAME_MACHINE=`(uname -m) 2>/dev/null` || UNAME_MACHINE=unknown UNAME_RELEASE=`(uname -r) 2>/dev/null` || UNAME_RELEASE=unknown UNAME_SYSTEM=`(uname -s) 2>/dev/null` || UNAME_SYSTEM=unknown UNAME_VERSION=`(uname -v) 2>/dev/null` || UNAME_VERSION=unknown # Note: order is significant - the case branches are not exclusive. case "${UNAME_MACHINE}:${UNAME_SYSTEM}:${UNAME_RELEASE}:${UNAME_VERSION}" in *:NetBSD:*:*) # NetBSD (nbsd) targets should (where applicable) match one or # more of the tupples: *-*-netbsdelf*, *-*-netbsdaout*, # *-*-netbsdecoff* and *-*-netbsd*. For targets that recently # switched to ELF, *-*-netbsd* would select the old # object file format. This provides both forward # compatibility and a consistent mechanism for selecting the # object file format. # # Note: NetBSD doesn't particularly care about the vendor # portion of the name. We always set it to "unknown". sysctl="sysctl -n hw.machine_arch" UNAME_MACHINE_ARCH=`(/sbin/$sysctl 2>/dev/null || \ /usr/sbin/$sysctl 2>/dev/null || echo unknown)` case "${UNAME_MACHINE_ARCH}" in armeb) machine=armeb-unknown ;; arm*) machine=arm-unknown ;; sh3el) machine=shl-unknown ;; sh3eb) machine=sh-unknown ;; *) machine=${UNAME_MACHINE_ARCH}-unknown ;; esac # The Operating System including object format, if it has switched # to ELF recently, or will in the future. case "${UNAME_MACHINE_ARCH}" in arm*|i386|m68k|ns32k|sh3*|sparc|vax) eval $set_cc_for_build if echo __ELF__ | $CC_FOR_BUILD -E - 2>/dev/null \ | grep __ELF__ >/dev/null then # Once all utilities can be ECOFF (netbsdecoff) or a.out (netbsdaout). # Return netbsd for either. FIX? os=netbsd else os=netbsdelf fi ;; *) os=netbsd ;; esac # The OS release # Debian GNU/NetBSD machines have a different userland, and # thus, need a distinct triplet. However, they do not need # kernel version information, so it can be replaced with a # suitable tag, in the style of linux-gnu. case "${UNAME_VERSION}" in Debian*) release='-gnu' ;; *) release=`echo ${UNAME_RELEASE}|sed -e 's/[-_].*/\./'` ;; esac # Since CPU_TYPE-MANUFACTURER-KERNEL-OPERATING_SYSTEM: # contains redundant information, the shorter form: # CPU_TYPE-MANUFACTURER-OPERATING_SYSTEM is used. echo "${machine}-${os}${release}" exit 0 ;; amd64:OpenBSD:*:*) echo x86_64-unknown-openbsd${UNAME_RELEASE} exit 0 ;; amiga:OpenBSD:*:*) echo m68k-unknown-openbsd${UNAME_RELEASE} exit 0 ;; cats:OpenBSD:*:*) echo arm-unknown-openbsd${UNAME_RELEASE} exit 0 ;; hp300:OpenBSD:*:*) echo m68k-unknown-openbsd${UNAME_RELEASE} exit 0 ;; luna88k:OpenBSD:*:*) echo m88k-unknown-openbsd${UNAME_RELEASE} exit 0 ;; mac68k:OpenBSD:*:*) echo m68k-unknown-openbsd${UNAME_RELEASE} exit 0 ;; macppc:OpenBSD:*:*) echo powerpc-unknown-openbsd${UNAME_RELEASE} exit 0 ;; mvme68k:OpenBSD:*:*) echo m68k-unknown-openbsd${UNAME_RELEASE} exit 0 ;; mvme88k:OpenBSD:*:*) echo m88k-unknown-openbsd${UNAME_RELEASE} exit 0 ;; mvmeppc:OpenBSD:*:*) echo powerpc-unknown-openbsd${UNAME_RELEASE} exit 0 ;; sgi:OpenBSD:*:*) echo mips64-unknown-openbsd${UNAME_RELEASE} exit 0 ;; sun3:OpenBSD:*:*) echo m68k-unknown-openbsd${UNAME_RELEASE} exit 0 ;; *:OpenBSD:*:*) echo ${UNAME_MACHINE}-unknown-openbsd${UNAME_RELEASE} exit 0 ;; *:ekkoBSD:*:*) echo ${UNAME_MACHINE}-unknown-ekkobsd${UNAME_RELEASE} exit 0 ;; macppc:MirBSD:*:*) echo powerppc-unknown-mirbsd${UNAME_RELEASE} exit 0 ;; *:MirBSD:*:*) echo ${UNAME_MACHINE}-unknown-mirbsd${UNAME_RELEASE} exit 0 ;; alpha:OSF1:*:*) case $UNAME_RELEASE in *4.0) UNAME_RELEASE=`/usr/sbin/sizer -v | awk '{print $3}'` ;; *5.*) UNAME_RELEASE=`/usr/sbin/sizer -v | awk '{print $4}'` ;; esac # According to Compaq, /usr/sbin/psrinfo has been available on # OSF/1 and Tru64 systems produced since 1995. I hope that # covers most systems running today. This code pipes the CPU # types through head -n 1, so we only detect the type of CPU 0. ALPHA_CPU_TYPE=`/usr/sbin/psrinfo -v | sed -n -e 's/^ The alpha \(.*\) processor.*$/\1/p' | head -n 1` case "$ALPHA_CPU_TYPE" in "EV4 (21064)") UNAME_MACHINE="alpha" ;; "EV4.5 (21064)") UNAME_MACHINE="alpha" ;; "LCA4 (21066/21068)") UNAME_MACHINE="alpha" ;; "EV5 (21164)") UNAME_MACHINE="alphaev5" ;; "EV5.6 (21164A)") UNAME_MACHINE="alphaev56" ;; "EV5.6 (21164PC)") UNAME_MACHINE="alphapca56" ;; "EV5.7 (21164PC)") UNAME_MACHINE="alphapca57" ;; "EV6 (21264)") UNAME_MACHINE="alphaev6" ;; "EV6.7 (21264A)") UNAME_MACHINE="alphaev67" ;; "EV6.8CB (21264C)") UNAME_MACHINE="alphaev68" ;; "EV6.8AL (21264B)") UNAME_MACHINE="alphaev68" ;; "EV6.8CX (21264D)") UNAME_MACHINE="alphaev68" ;; "EV6.9A (21264/EV69A)") UNAME_MACHINE="alphaev69" ;; "EV7 (21364)") UNAME_MACHINE="alphaev7" ;; "EV7.9 (21364A)") UNAME_MACHINE="alphaev79" ;; esac # A Pn.n version is a patched version. # A Vn.n version is a released version. # A Tn.n version is a released field test version. # A Xn.n version is an unreleased experimental baselevel. # 1.2 uses "1.2" for uname -r. echo ${UNAME_MACHINE}-dec-osf`echo ${UNAME_RELEASE} | sed -e 's/^[PVTX]//' | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz'` exit 0 ;; Alpha\ *:Windows_NT*:*) # How do we know it's Interix rather than the generic POSIX subsystem? # Should we change UNAME_MACHINE based on the output of uname instead # of the specific Alpha model? echo alpha-pc-interix exit 0 ;; 21064:Windows_NT:50:3) echo alpha-dec-winnt3.5 exit 0 ;; Amiga*:UNIX_System_V:4.0:*) echo m68k-unknown-sysv4 exit 0;; *:[Aa]miga[Oo][Ss]:*:*) echo ${UNAME_MACHINE}-unknown-amigaos exit 0 ;; *:[Mm]orph[Oo][Ss]:*:*) echo ${UNAME_MACHINE}-unknown-morphos exit 0 ;; *:OS/390:*:*) echo i370-ibm-openedition exit 0 ;; *:OS400:*:*) echo powerpc-ibm-os400 exit 0 ;; arm:RISC*:1.[012]*:*|arm:riscix:1.[012]*:*) echo arm-acorn-riscix${UNAME_RELEASE} exit 0;; SR2?01:HI-UX/MPP:*:* | SR8000:HI-UX/MPP:*:*) echo hppa1.1-hitachi-hiuxmpp exit 0;; Pyramid*:OSx*:*:* | MIS*:OSx*:*:* | MIS*:SMP_DC-OSx*:*:*) # akee@wpdis03.wpafb.af.mil (Earle F. Ake) contributed MIS and NILE. if test "`(/bin/universe) 2>/dev/null`" = att ; then echo pyramid-pyramid-sysv3 else echo pyramid-pyramid-bsd fi exit 0 ;; NILE*:*:*:dcosx) echo pyramid-pyramid-svr4 exit 0 ;; DRS?6000:unix:4.0:6*) echo sparc-icl-nx6 exit 0 ;; DRS?6000:UNIX_SV:4.2*:7*) case `/usr/bin/uname -p` in sparc) echo sparc-icl-nx7 && exit 0 ;; esac ;; sun4H:SunOS:5.*:*) echo sparc-hal-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'` exit 0 ;; sun4*:SunOS:5.*:* | tadpole*:SunOS:5.*:*) echo sparc-sun-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'` exit 0 ;; i86pc:SunOS:5.*:*) echo i386-pc-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'` exit 0 ;; sun4*:SunOS:6*:*) # According to config.sub, this is the proper way to canonicalize # SunOS6. Hard to guess exactly what SunOS6 will be like, but # it's likely to be more like Solaris than SunOS4. echo sparc-sun-solaris3`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'` exit 0 ;; sun4*:SunOS:*:*) case "`/usr/bin/arch -k`" in Series*|S4*) UNAME_RELEASE=`uname -v` ;; esac # Japanese Language versions have a version number like `4.1.3-JL'. echo sparc-sun-sunos`echo ${UNAME_RELEASE}|sed -e 's/-/_/'` exit 0 ;; sun3*:SunOS:*:*) echo m68k-sun-sunos${UNAME_RELEASE} exit 0 ;; sun*:*:4.2BSD:*) UNAME_RELEASE=`(sed 1q /etc/motd | awk '{print substr($5,1,3)}') 2>/dev/null` test "x${UNAME_RELEASE}" = "x" && UNAME_RELEASE=3 case "`/bin/arch`" in sun3) echo m68k-sun-sunos${UNAME_RELEASE} ;; sun4) echo sparc-sun-sunos${UNAME_RELEASE} ;; esac exit 0 ;; aushp:SunOS:*:*) echo sparc-auspex-sunos${UNAME_RELEASE} exit 0 ;; # The situation for MiNT is a little confusing. The machine name # can be virtually everything (everything which is not # "atarist" or "atariste" at least should have a processor # > m68000). The system name ranges from "MiNT" over "FreeMiNT" # to the lowercase version "mint" (or "freemint"). Finally # the system name "TOS" denotes a system which is actually not # MiNT. But MiNT is downward compatible to TOS, so this should # be no problem. atarist[e]:*MiNT:*:* | atarist[e]:*mint:*:* | atarist[e]:*TOS:*:*) echo m68k-atari-mint${UNAME_RELEASE} exit 0 ;; atari*:*MiNT:*:* | atari*:*mint:*:* | atarist[e]:*TOS:*:*) echo m68k-atari-mint${UNAME_RELEASE} exit 0 ;; *falcon*:*MiNT:*:* | *falcon*:*mint:*:* | *falcon*:*TOS:*:*) echo m68k-atari-mint${UNAME_RELEASE} exit 0 ;; milan*:*MiNT:*:* | milan*:*mint:*:* | *milan*:*TOS:*:*) echo m68k-milan-mint${UNAME_RELEASE} exit 0 ;; hades*:*MiNT:*:* | hades*:*mint:*:* | *hades*:*TOS:*:*) echo m68k-hades-mint${UNAME_RELEASE} exit 0 ;; *:*MiNT:*:* | *:*mint:*:* | *:*TOS:*:*) echo m68k-unknown-mint${UNAME_RELEASE} exit 0 ;; m68k:machten:*:*) echo m68k-apple-machten${UNAME_RELEASE} exit 0 ;; powerpc:machten:*:*) echo powerpc-apple-machten${UNAME_RELEASE} exit 0 ;; RISC*:Mach:*:*) echo mips-dec-mach_bsd4.3 exit 0 ;; RISC*:ULTRIX:*:*) echo mips-dec-ultrix${UNAME_RELEASE} exit 0 ;; VAX*:ULTRIX*:*:*) echo vax-dec-ultrix${UNAME_RELEASE} exit 0 ;; 2020:CLIX:*:* | 2430:CLIX:*:*) echo clipper-intergraph-clix${UNAME_RELEASE} exit 0 ;; mips:*:*:UMIPS | mips:*:*:RISCos) eval $set_cc_for_build sed 's/^ //' << EOF >$dummy.c #ifdef __cplusplus #include /* for printf() prototype */ int main (int argc, char *argv[]) { #else int main (argc, argv) int argc; char *argv[]; { #endif #if defined (host_mips) && defined (MIPSEB) #if defined (SYSTYPE_SYSV) printf ("mips-mips-riscos%ssysv\n", argv[1]); exit (0); #endif #if defined (SYSTYPE_SVR4) printf ("mips-mips-riscos%ssvr4\n", argv[1]); exit (0); #endif #if defined (SYSTYPE_BSD43) || defined(SYSTYPE_BSD) printf ("mips-mips-riscos%sbsd\n", argv[1]); exit (0); #endif #endif exit (-1); } EOF $CC_FOR_BUILD -o $dummy $dummy.c \ && $dummy `echo "${UNAME_RELEASE}" | sed -n 's/\([0-9]*\).*/\1/p'` \ && exit 0 echo mips-mips-riscos${UNAME_RELEASE} exit 0 ;; Motorola:PowerMAX_OS:*:*) echo powerpc-motorola-powermax exit 0 ;; Motorola:*:4.3:PL8-*) echo powerpc-harris-powermax exit 0 ;; Night_Hawk:*:*:PowerMAX_OS | Synergy:PowerMAX_OS:*:*) echo powerpc-harris-powermax exit 0 ;; Night_Hawk:Power_UNIX:*:*) echo powerpc-harris-powerunix exit 0 ;; m88k:CX/UX:7*:*) echo m88k-harris-cxux7 exit 0 ;; m88k:*:4*:R4*) echo m88k-motorola-sysv4 exit 0 ;; m88k:*:3*:R3*) echo m88k-motorola-sysv3 exit 0 ;; AViiON:dgux:*:*) # DG/UX returns AViiON for all architectures UNAME_PROCESSOR=`/usr/bin/uname -p` if [ $UNAME_PROCESSOR = mc88100 ] || [ $UNAME_PROCESSOR = mc88110 ] then if [ ${TARGET_BINARY_INTERFACE}x = m88kdguxelfx ] || \ [ ${TARGET_BINARY_INTERFACE}x = x ] then echo m88k-dg-dgux${UNAME_RELEASE} else echo m88k-dg-dguxbcs${UNAME_RELEASE} fi else echo i586-dg-dgux${UNAME_RELEASE} fi exit 0 ;; M88*:DolphinOS:*:*) # DolphinOS (SVR3) echo m88k-dolphin-sysv3 exit 0 ;; M88*:*:R3*:*) # Delta 88k system running SVR3 echo m88k-motorola-sysv3 exit 0 ;; XD88*:*:*:*) # Tektronix XD88 system running UTekV (SVR3) echo m88k-tektronix-sysv3 exit 0 ;; Tek43[0-9][0-9]:UTek:*:*) # Tektronix 4300 system running UTek (BSD) echo m68k-tektronix-bsd exit 0 ;; *:IRIX*:*:*) echo mips-sgi-irix`echo ${UNAME_RELEASE}|sed -e 's/-/_/g'` exit 0 ;; ????????:AIX?:[12].1:2) # AIX 2.2.1 or AIX 2.1.1 is RT/PC AIX. echo romp-ibm-aix # uname -m gives an 8 hex-code CPU id exit 0 ;; # Note that: echo "'`uname -s`'" gives 'AIX ' i*86:AIX:*:*) echo i386-ibm-aix exit 0 ;; ia64:AIX:*:*) if [ -x /usr/bin/oslevel ] ; then IBM_REV=`/usr/bin/oslevel` else IBM_REV=${UNAME_VERSION}.${UNAME_RELEASE} fi echo ${UNAME_MACHINE}-ibm-aix${IBM_REV} exit 0 ;; *:AIX:2:3) if grep bos325 /usr/include/stdio.h >/dev/null 2>&1; then eval $set_cc_for_build sed 's/^ //' << EOF >$dummy.c #include main() { if (!__power_pc()) exit(1); puts("powerpc-ibm-aix3.2.5"); exit(0); } EOF $CC_FOR_BUILD -o $dummy $dummy.c && $dummy && exit 0 echo rs6000-ibm-aix3.2.5 elif grep bos324 /usr/include/stdio.h >/dev/null 2>&1; then echo rs6000-ibm-aix3.2.4 else echo rs6000-ibm-aix3.2 fi exit 0 ;; *:AIX:*:[45]) IBM_CPU_ID=`/usr/sbin/lsdev -C -c processor -S available | sed 1q | awk '{ print $1 }'` if /usr/sbin/lsattr -El ${IBM_CPU_ID} | grep ' POWER' >/dev/null 2>&1; then IBM_ARCH=rs6000 else IBM_ARCH=powerpc fi if [ -x /usr/bin/oslevel ] ; then IBM_REV=`/usr/bin/oslevel` else IBM_REV=${UNAME_VERSION}.${UNAME_RELEASE} fi echo ${IBM_ARCH}-ibm-aix${IBM_REV} exit 0 ;; *:AIX:*:*) echo rs6000-ibm-aix exit 0 ;; ibmrt:4.4BSD:*|romp-ibm:BSD:*) echo romp-ibm-bsd4.4 exit 0 ;; ibmrt:*BSD:*|romp-ibm:BSD:*) # covers RT/PC BSD and echo romp-ibm-bsd${UNAME_RELEASE} # 4.3 with uname added to exit 0 ;; # report: romp-ibm BSD 4.3 *:BOSX:*:*) echo rs6000-bull-bosx exit 0 ;; DPX/2?00:B.O.S.:*:*) echo m68k-bull-sysv3 exit 0 ;; 9000/[34]??:4.3bsd:1.*:*) echo m68k-hp-bsd exit 0 ;; hp300:4.4BSD:*:* | 9000/[34]??:4.3bsd:2.*:*) echo m68k-hp-bsd4.4 exit 0 ;; 9000/[34678]??:HP-UX:*:*) HPUX_REV=`echo ${UNAME_RELEASE}|sed -e 's/[^.]*.[0B]*//'` case "${UNAME_MACHINE}" in 9000/31? ) HP_ARCH=m68000 ;; 9000/[34]?? ) HP_ARCH=m68k ;; 9000/[678][0-9][0-9]) if [ -x /usr/bin/getconf ]; then sc_cpu_version=`/usr/bin/getconf SC_CPU_VERSION 2>/dev/null` sc_kernel_bits=`/usr/bin/getconf SC_KERNEL_BITS 2>/dev/null` case "${sc_cpu_version}" in 523) HP_ARCH="hppa1.0" ;; # CPU_PA_RISC1_0 528) HP_ARCH="hppa1.1" ;; # CPU_PA_RISC1_1 532) # CPU_PA_RISC2_0 case "${sc_kernel_bits}" in 32) HP_ARCH="hppa2.0n" ;; 64) HP_ARCH="hppa2.0w" ;; '') HP_ARCH="hppa2.0" ;; # HP-UX 10.20 esac ;; esac fi if [ "${HP_ARCH}" = "" ]; then eval $set_cc_for_build sed 's/^ //' << EOF >$dummy.c #define _HPUX_SOURCE #include #include int main () { #if defined(_SC_KERNEL_BITS) long bits = sysconf(_SC_KERNEL_BITS); #endif long cpu = sysconf (_SC_CPU_VERSION); switch (cpu) { case CPU_PA_RISC1_0: puts ("hppa1.0"); break; case CPU_PA_RISC1_1: puts ("hppa1.1"); break; case CPU_PA_RISC2_0: #if defined(_SC_KERNEL_BITS) switch (bits) { case 64: puts ("hppa2.0w"); break; case 32: puts ("hppa2.0n"); break; default: puts ("hppa2.0"); break; } break; #else /* !defined(_SC_KERNEL_BITS) */ puts ("hppa2.0"); break; #endif default: puts ("hppa1.0"); break; } exit (0); } EOF (CCOPTS= $CC_FOR_BUILD -o $dummy $dummy.c 2>/dev/null) && HP_ARCH=`$dummy` test -z "$HP_ARCH" && HP_ARCH=hppa fi ;; esac if [ ${HP_ARCH} = "hppa2.0w" ] then # avoid double evaluation of $set_cc_for_build test -n "$CC_FOR_BUILD" || eval $set_cc_for_build if echo __LP64__ | (CCOPTS= $CC_FOR_BUILD -E -) | grep __LP64__ >/dev/null then HP_ARCH="hppa2.0w" else HP_ARCH="hppa64" fi fi echo ${HP_ARCH}-hp-hpux${HPUX_REV} exit 0 ;; ia64:HP-UX:*:*) HPUX_REV=`echo ${UNAME_RELEASE}|sed -e 's/[^.]*.[0B]*//'` echo ia64-hp-hpux${HPUX_REV} exit 0 ;; 3050*:HI-UX:*:*) eval $set_cc_for_build sed 's/^ //' << EOF >$dummy.c #include int main () { long cpu = sysconf (_SC_CPU_VERSION); /* The order matters, because CPU_IS_HP_MC68K erroneously returns true for CPU_PA_RISC1_0. CPU_IS_PA_RISC returns correct results, however. */ if (CPU_IS_PA_RISC (cpu)) { switch (cpu) { case CPU_PA_RISC1_0: puts ("hppa1.0-hitachi-hiuxwe2"); break; case CPU_PA_RISC1_1: puts ("hppa1.1-hitachi-hiuxwe2"); break; case CPU_PA_RISC2_0: puts ("hppa2.0-hitachi-hiuxwe2"); break; default: puts ("hppa-hitachi-hiuxwe2"); break; } } else if (CPU_IS_HP_MC68K (cpu)) puts ("m68k-hitachi-hiuxwe2"); else puts ("unknown-hitachi-hiuxwe2"); exit (0); } EOF $CC_FOR_BUILD -o $dummy $dummy.c && $dummy && exit 0 echo unknown-hitachi-hiuxwe2 exit 0 ;; 9000/7??:4.3bsd:*:* | 9000/8?[79]:4.3bsd:*:* ) echo hppa1.1-hp-bsd exit 0 ;; 9000/8??:4.3bsd:*:*) echo hppa1.0-hp-bsd exit 0 ;; *9??*:MPE/iX:*:* | *3000*:MPE/iX:*:*) echo hppa1.0-hp-mpeix exit 0 ;; hp7??:OSF1:*:* | hp8?[79]:OSF1:*:* ) echo hppa1.1-hp-osf exit 0 ;; hp8??:OSF1:*:*) echo hppa1.0-hp-osf exit 0 ;; i*86:OSF1:*:*) if [ -x /usr/sbin/sysversion ] ; then echo ${UNAME_MACHINE}-unknown-osf1mk else echo ${UNAME_MACHINE}-unknown-osf1 fi exit 0 ;; parisc*:Lites*:*:*) echo hppa1.1-hp-lites exit 0 ;; C1*:ConvexOS:*:* | convex:ConvexOS:C1*:*) echo c1-convex-bsd exit 0 ;; C2*:ConvexOS:*:* | convex:ConvexOS:C2*:*) if getsysinfo -f scalar_acc then echo c32-convex-bsd else echo c2-convex-bsd fi exit 0 ;; C34*:ConvexOS:*:* | convex:ConvexOS:C34*:*) echo c34-convex-bsd exit 0 ;; C38*:ConvexOS:*:* | convex:ConvexOS:C38*:*) echo c38-convex-bsd exit 0 ;; C4*:ConvexOS:*:* | convex:ConvexOS:C4*:*) echo c4-convex-bsd exit 0 ;; CRAY*Y-MP:*:*:*) echo ymp-cray-unicos${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/' exit 0 ;; CRAY*[A-Z]90:*:*:*) echo ${UNAME_MACHINE}-cray-unicos${UNAME_RELEASE} \ | sed -e 's/CRAY.*\([A-Z]90\)/\1/' \ -e y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/ \ -e 's/\.[^.]*$/.X/' exit 0 ;; CRAY*TS:*:*:*) echo t90-cray-unicos${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/' exit 0 ;; CRAY*T3E:*:*:*) echo alphaev5-cray-unicosmk${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/' exit 0 ;; CRAY*SV1:*:*:*) echo sv1-cray-unicos${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/' exit 0 ;; *:UNICOS/mp:*:*) echo craynv-cray-unicosmp${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/' exit 0 ;; F30[01]:UNIX_System_V:*:* | F700:UNIX_System_V:*:*) FUJITSU_PROC=`uname -m | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz'` FUJITSU_SYS=`uname -p | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/\///'` FUJITSU_REL=`echo ${UNAME_RELEASE} | sed -e 's/ /_/'` echo "${FUJITSU_PROC}-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}" exit 0 ;; 5000:UNIX_System_V:4.*:*) FUJITSU_SYS=`uname -p | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/\///'` FUJITSU_REL=`echo ${UNAME_RELEASE} | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/ /_/'` echo "sparc-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}" exit 0 ;; i*86:BSD/386:*:* | i*86:BSD/OS:*:* | *:Ascend\ Embedded/OS:*:*) echo ${UNAME_MACHINE}-pc-bsdi${UNAME_RELEASE} exit 0 ;; sparc*:BSD/OS:*:*) echo sparc-unknown-bsdi${UNAME_RELEASE} exit 0 ;; *:BSD/OS:*:*) echo ${UNAME_MACHINE}-unknown-bsdi${UNAME_RELEASE} exit 0 ;; *:FreeBSD:*:*) echo ${UNAME_MACHINE}-unknown-freebsd`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'` exit 0 ;; i*:CYGWIN*:*) echo ${UNAME_MACHINE}-pc-cygwin exit 0 ;; i*:MINGW*:*) echo ${UNAME_MACHINE}-pc-mingw32 exit 0 ;; i*:PW*:*) echo ${UNAME_MACHINE}-pc-pw32 exit 0 ;; x86:Interix*:[34]*) echo i586-pc-interix${UNAME_RELEASE}|sed -e 's/\..*//' exit 0 ;; [345]86:Windows_95:* | [345]86:Windows_98:* | [345]86:Windows_NT:*) echo i${UNAME_MACHINE}-pc-mks exit 0 ;; i*:Windows_NT*:* | Pentium*:Windows_NT*:*) # How do we know it's Interix rather than the generic POSIX subsystem? # It also conflicts with pre-2.0 versions of AT&T UWIN. Should we # UNAME_MACHINE based on the output of uname instead of i386? echo i586-pc-interix exit 0 ;; i*:UWIN*:*) echo ${UNAME_MACHINE}-pc-uwin exit 0 ;; p*:CYGWIN*:*) echo powerpcle-unknown-cygwin exit 0 ;; prep*:SunOS:5.*:*) echo powerpcle-unknown-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'` exit 0 ;; *:GNU:*:*) # the GNU system echo `echo ${UNAME_MACHINE}|sed -e 's,[-/].*$,,'`-unknown-gnu`echo ${UNAME_RELEASE}|sed -e 's,/.*$,,'` exit 0 ;; *:GNU/*:*:*) # other systems with GNU libc and userland echo ${UNAME_MACHINE}-unknown-`echo ${UNAME_SYSTEM} | sed 's,^[^/]*/,,' | tr '[A-Z]' '[a-z]'``echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'`-gnu exit 0 ;; i*86:Minix:*:*) echo ${UNAME_MACHINE}-pc-minix exit 0 ;; arm*:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-gnu exit 0 ;; cris:Linux:*:*) echo cris-axis-linux-gnu exit 0 ;; crisv32:Linux:*:*) echo crisv32-axis-linux-gnu exit 0 ;; frv:Linux:*:*) echo frv-unknown-linux-gnu exit 0 ;; ia64:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-gnu exit 0 ;; m32r*:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-gnu exit 0 ;; m68*:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-gnu exit 0 ;; mips:Linux:*:*) eval $set_cc_for_build sed 's/^ //' << EOF >$dummy.c #undef CPU #undef mips #undef mipsel #if defined(__MIPSEL__) || defined(__MIPSEL) || defined(_MIPSEL) || defined(MIPSEL) CPU=mipsel #else #if defined(__MIPSEB__) || defined(__MIPSEB) || defined(_MIPSEB) || defined(MIPSEB) CPU=mips #else CPU= #endif #endif EOF eval `$CC_FOR_BUILD -E $dummy.c 2>/dev/null | grep ^CPU=` test x"${CPU}" != x && echo "${CPU}-unknown-linux-gnu" && exit 0 ;; mips64:Linux:*:*) eval $set_cc_for_build sed 's/^ //' << EOF >$dummy.c #undef CPU #undef mips64 #undef mips64el #if defined(__MIPSEL__) || defined(__MIPSEL) || defined(_MIPSEL) || defined(MIPSEL) CPU=mips64el #else #if defined(__MIPSEB__) || defined(__MIPSEB) || defined(_MIPSEB) || defined(MIPSEB) CPU=mips64 #else CPU= #endif #endif EOF eval `$CC_FOR_BUILD -E $dummy.c 2>/dev/null | grep ^CPU=` test x"${CPU}" != x && echo "${CPU}-unknown-linux-gnu" && exit 0 ;; ppc:Linux:*:*) echo powerpc-unknown-linux-gnu exit 0 ;; ppc64:Linux:*:*) echo powerpc64-unknown-linux-gnu exit 0 ;; alpha:Linux:*:*) case `sed -n '/^cpu model/s/^.*: \(.*\)/\1/p' < /proc/cpuinfo` in EV5) UNAME_MACHINE=alphaev5 ;; EV56) UNAME_MACHINE=alphaev56 ;; PCA56) UNAME_MACHINE=alphapca56 ;; PCA57) UNAME_MACHINE=alphapca56 ;; EV6) UNAME_MACHINE=alphaev6 ;; EV67) UNAME_MACHINE=alphaev67 ;; EV68*) UNAME_MACHINE=alphaev68 ;; esac objdump --private-headers /bin/sh | grep ld.so.1 >/dev/null if test "$?" = 0 ; then LIBC="libc1" ; else LIBC="" ; fi echo ${UNAME_MACHINE}-unknown-linux-gnu${LIBC} exit 0 ;; parisc:Linux:*:* | hppa:Linux:*:*) # Look for CPU level case `grep '^cpu[^a-z]*:' /proc/cpuinfo 2>/dev/null | cut -d' ' -f2` in PA7*) echo hppa1.1-unknown-linux-gnu ;; PA8*) echo hppa2.0-unknown-linux-gnu ;; *) echo hppa-unknown-linux-gnu ;; esac exit 0 ;; parisc64:Linux:*:* | hppa64:Linux:*:*) echo hppa64-unknown-linux-gnu exit 0 ;; s390:Linux:*:* | s390x:Linux:*:*) echo ${UNAME_MACHINE}-ibm-linux exit 0 ;; sh64*:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-gnu exit 0 ;; sh*:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-gnu exit 0 ;; sparc:Linux:*:* | sparc64:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-gnu exit 0 ;; x86_64:Linux:*:*) echo x86_64-unknown-linux-gnu exit 0 ;; i*86:Linux:*:*) # The BFD linker knows what the default object file format is, so # first see if it will tell us. cd to the root directory to prevent # problems with other programs or directories called `ld' in the path. # Set LC_ALL=C to ensure ld outputs messages in English. ld_supported_targets=`cd /; LC_ALL=C ld --help 2>&1 \ | sed -ne '/supported targets:/!d s/[ ][ ]*/ /g s/.*supported targets: *// s/ .*// p'` case "$ld_supported_targets" in elf32-i386) TENTATIVE="${UNAME_MACHINE}-pc-linux-gnu" ;; a.out-i386-linux) echo "${UNAME_MACHINE}-pc-linux-gnuaout" exit 0 ;; coff-i386) echo "${UNAME_MACHINE}-pc-linux-gnucoff" exit 0 ;; "") # Either a pre-BFD a.out linker (linux-gnuoldld) or # one that does not give us useful --help. echo "${UNAME_MACHINE}-pc-linux-gnuoldld" exit 0 ;; esac # Determine whether the default compiler is a.out or elf eval $set_cc_for_build sed 's/^ //' << EOF >$dummy.c #include #ifdef __ELF__ # ifdef __GLIBC__ # if __GLIBC__ >= 2 LIBC=gnu # else LIBC=gnulibc1 # endif # else LIBC=gnulibc1 # endif #else #ifdef __INTEL_COMPILER LIBC=gnu #else LIBC=gnuaout #endif #endif #ifdef __dietlibc__ LIBC=dietlibc #endif EOF eval `$CC_FOR_BUILD -E $dummy.c 2>/dev/null | grep ^LIBC=` test x"${LIBC}" != x && echo "${UNAME_MACHINE}-pc-linux-${LIBC}" && exit 0 test x"${TENTATIVE}" != x && echo "${TENTATIVE}" && exit 0 ;; i*86:DYNIX/ptx:4*:*) # ptx 4.0 does uname -s correctly, with DYNIX/ptx in there. # earlier versions are messed up and put the nodename in both # sysname and nodename. echo i386-sequent-sysv4 exit 0 ;; i*86:UNIX_SV:4.2MP:2.*) # Unixware is an offshoot of SVR4, but it has its own version # number series starting with 2... # I am not positive that other SVR4 systems won't match this, # I just have to hope. -- rms. # Use sysv4.2uw... so that sysv4* matches it. echo ${UNAME_MACHINE}-pc-sysv4.2uw${UNAME_VERSION} exit 0 ;; i*86:OS/2:*:*) # If we were able to find `uname', then EMX Unix compatibility # is probably installed. echo ${UNAME_MACHINE}-pc-os2-emx exit 0 ;; i*86:XTS-300:*:STOP) echo ${UNAME_MACHINE}-unknown-stop exit 0 ;; i*86:atheos:*:*) echo ${UNAME_MACHINE}-unknown-atheos exit 0 ;; i*86:syllable:*:*) echo ${UNAME_MACHINE}-pc-syllable exit 0 ;; i*86:LynxOS:2.*:* | i*86:LynxOS:3.[01]*:* | i*86:LynxOS:4.0*:*) echo i386-unknown-lynxos${UNAME_RELEASE} exit 0 ;; i*86:*DOS:*:*) echo ${UNAME_MACHINE}-pc-msdosdjgpp exit 0 ;; i*86:*:4.*:* | i*86:SYSTEM_V:4.*:*) UNAME_REL=`echo ${UNAME_RELEASE} | sed 's/\/MP$//'` if grep Novell /usr/include/link.h >/dev/null 2>/dev/null; then echo ${UNAME_MACHINE}-univel-sysv${UNAME_REL} else echo ${UNAME_MACHINE}-pc-sysv${UNAME_REL} fi exit 0 ;; i*86:*:5:[78]*) case `/bin/uname -X | grep "^Machine"` in *486*) UNAME_MACHINE=i486 ;; *Pentium) UNAME_MACHINE=i586 ;; *Pent*|*Celeron) UNAME_MACHINE=i686 ;; esac echo ${UNAME_MACHINE}-unknown-sysv${UNAME_RELEASE}${UNAME_SYSTEM}${UNAME_VERSION} exit 0 ;; i*86:*:3.2:*) if test -f /usr/options/cb.name; then UNAME_REL=`sed -n 's/.*Version //p' /dev/null >/dev/null ; then UNAME_REL=`(/bin/uname -X|grep Release|sed -e 's/.*= //')` (/bin/uname -X|grep i80486 >/dev/null) && UNAME_MACHINE=i486 (/bin/uname -X|grep '^Machine.*Pentium' >/dev/null) \ && UNAME_MACHINE=i586 (/bin/uname -X|grep '^Machine.*Pent *II' >/dev/null) \ && UNAME_MACHINE=i686 (/bin/uname -X|grep '^Machine.*Pentium Pro' >/dev/null) \ && UNAME_MACHINE=i686 echo ${UNAME_MACHINE}-pc-sco$UNAME_REL else echo ${UNAME_MACHINE}-pc-sysv32 fi exit 0 ;; pc:*:*:*) # Left here for compatibility: # uname -m prints for DJGPP always 'pc', but it prints nothing about # the processor, so we play safe by assuming i386. echo i386-pc-msdosdjgpp exit 0 ;; Intel:Mach:3*:*) echo i386-pc-mach3 exit 0 ;; paragon:*:*:*) echo i860-intel-osf1 exit 0 ;; i860:*:4.*:*) # i860-SVR4 if grep Stardent /usr/include/sys/uadmin.h >/dev/null 2>&1 ; then echo i860-stardent-sysv${UNAME_RELEASE} # Stardent Vistra i860-SVR4 else # Add other i860-SVR4 vendors below as they are discovered. echo i860-unknown-sysv${UNAME_RELEASE} # Unknown i860-SVR4 fi exit 0 ;; mini*:CTIX:SYS*5:*) # "miniframe" echo m68010-convergent-sysv exit 0 ;; mc68k:UNIX:SYSTEM5:3.51m) echo m68k-convergent-sysv exit 0 ;; M680?0:D-NIX:5.3:*) echo m68k-diab-dnix exit 0 ;; M68*:*:R3V[5678]*:*) test -r /sysV68 && echo 'm68k-motorola-sysv' && exit 0 ;; 3[345]??:*:4.0:3.0 | 3[34]??A:*:4.0:3.0 | 3[34]??,*:*:4.0:3.0 | 3[34]??/*:*:4.0:3.0 | 4400:*:4.0:3.0 | 4850:*:4.0:3.0 | SKA40:*:4.0:3.0 | SDS2:*:4.0:3.0 | SHG2:*:4.0:3.0 | S7501*:*:4.0:3.0) OS_REL='' test -r /etc/.relid \ && OS_REL=.`sed -n 's/[^ ]* [^ ]* \([0-9][0-9]\).*/\1/p' < /etc/.relid` /bin/uname -p 2>/dev/null | grep 86 >/dev/null \ && echo i486-ncr-sysv4.3${OS_REL} && exit 0 /bin/uname -p 2>/dev/null | /bin/grep entium >/dev/null \ && echo i586-ncr-sysv4.3${OS_REL} && exit 0 ;; 3[34]??:*:4.0:* | 3[34]??,*:*:4.0:*) /bin/uname -p 2>/dev/null | grep 86 >/dev/null \ && echo i486-ncr-sysv4 && exit 0 ;; m68*:LynxOS:2.*:* | m68*:LynxOS:3.0*:*) echo m68k-unknown-lynxos${UNAME_RELEASE} exit 0 ;; mc68030:UNIX_System_V:4.*:*) echo m68k-atari-sysv4 exit 0 ;; TSUNAMI:LynxOS:2.*:*) echo sparc-unknown-lynxos${UNAME_RELEASE} exit 0 ;; rs6000:LynxOS:2.*:*) echo rs6000-unknown-lynxos${UNAME_RELEASE} exit 0 ;; PowerPC:LynxOS:2.*:* | PowerPC:LynxOS:3.[01]*:* | PowerPC:LynxOS:4.0*:*) echo powerpc-unknown-lynxos${UNAME_RELEASE} exit 0 ;; SM[BE]S:UNIX_SV:*:*) echo mips-dde-sysv${UNAME_RELEASE} exit 0 ;; RM*:ReliantUNIX-*:*:*) echo mips-sni-sysv4 exit 0 ;; RM*:SINIX-*:*:*) echo mips-sni-sysv4 exit 0 ;; *:SINIX-*:*:*) if uname -p 2>/dev/null >/dev/null ; then UNAME_MACHINE=`(uname -p) 2>/dev/null` echo ${UNAME_MACHINE}-sni-sysv4 else echo ns32k-sni-sysv fi exit 0 ;; PENTIUM:*:4.0*:*) # Unisys `ClearPath HMP IX 4000' SVR4/MP effort # says echo i586-unisys-sysv4 exit 0 ;; *:UNIX_System_V:4*:FTX*) # From Gerald Hewes . # How about differentiating between stratus architectures? -djm echo hppa1.1-stratus-sysv4 exit 0 ;; *:*:*:FTX*) # From seanf@swdc.stratus.com. echo i860-stratus-sysv4 exit 0 ;; *:VOS:*:*) # From Paul.Green@stratus.com. echo hppa1.1-stratus-vos exit 0 ;; mc68*:A/UX:*:*) echo m68k-apple-aux${UNAME_RELEASE} exit 0 ;; news*:NEWS-OS:6*:*) echo mips-sony-newsos6 exit 0 ;; R[34]000:*System_V*:*:* | R4000:UNIX_SYSV:*:* | R*000:UNIX_SV:*:*) if [ -d /usr/nec ]; then echo mips-nec-sysv${UNAME_RELEASE} else echo mips-unknown-sysv${UNAME_RELEASE} fi exit 0 ;; BeBox:BeOS:*:*) # BeOS running on hardware made by Be, PPC only. echo powerpc-be-beos exit 0 ;; BeMac:BeOS:*:*) # BeOS running on Mac or Mac clone, PPC only. echo powerpc-apple-beos exit 0 ;; BePC:BeOS:*:*) # BeOS running on Intel PC compatible. echo i586-pc-beos exit 0 ;; SX-4:SUPER-UX:*:*) echo sx4-nec-superux${UNAME_RELEASE} exit 0 ;; SX-5:SUPER-UX:*:*) echo sx5-nec-superux${UNAME_RELEASE} exit 0 ;; SX-6:SUPER-UX:*:*) echo sx6-nec-superux${UNAME_RELEASE} exit 0 ;; Power*:Rhapsody:*:*) echo powerpc-apple-rhapsody${UNAME_RELEASE} exit 0 ;; *:Rhapsody:*:*) echo ${UNAME_MACHINE}-apple-rhapsody${UNAME_RELEASE} exit 0 ;; *:Darwin:*:*) UNAME_PROCESSOR=`uname -p` || UNAME_PROCESSOR=unknown case $UNAME_PROCESSOR in *86) UNAME_PROCESSOR=i686 ;; unknown) UNAME_PROCESSOR=powerpc ;; esac echo ${UNAME_PROCESSOR}-apple-darwin${UNAME_RELEASE} exit 0 ;; *:procnto*:*:* | *:QNX:[0123456789]*:*) UNAME_PROCESSOR=`uname -p` if test "$UNAME_PROCESSOR" = "x86"; then UNAME_PROCESSOR=i386 UNAME_MACHINE=pc fi echo ${UNAME_PROCESSOR}-${UNAME_MACHINE}-nto-qnx${UNAME_RELEASE} exit 0 ;; *:QNX:*:4*) echo i386-pc-qnx exit 0 ;; NSR-?:NONSTOP_KERNEL:*:*) echo nsr-tandem-nsk${UNAME_RELEASE} exit 0 ;; *:NonStop-UX:*:*) echo mips-compaq-nonstopux exit 0 ;; BS2000:POSIX*:*:*) echo bs2000-siemens-sysv exit 0 ;; DS/*:UNIX_System_V:*:*) echo ${UNAME_MACHINE}-${UNAME_SYSTEM}-${UNAME_RELEASE} exit 0 ;; *:Plan9:*:*) # "uname -m" is not consistent, so use $cputype instead. 386 # is converted to i386 for consistency with other x86 # operating systems. if test "$cputype" = "386"; then UNAME_MACHINE=i386 else UNAME_MACHINE="$cputype" fi echo ${UNAME_MACHINE}-unknown-plan9 exit 0 ;; *:TOPS-10:*:*) echo pdp10-unknown-tops10 exit 0 ;; *:TENEX:*:*) echo pdp10-unknown-tenex exit 0 ;; KS10:TOPS-20:*:* | KL10:TOPS-20:*:* | TYPE4:TOPS-20:*:*) echo pdp10-dec-tops20 exit 0 ;; XKL-1:TOPS-20:*:* | TYPE5:TOPS-20:*:*) echo pdp10-xkl-tops20 exit 0 ;; *:TOPS-20:*:*) echo pdp10-unknown-tops20 exit 0 ;; *:ITS:*:*) echo pdp10-unknown-its exit 0 ;; SEI:*:*:SEIUX) echo mips-sei-seiux${UNAME_RELEASE} exit 0 ;; *:DragonFly:*:*) echo ${UNAME_MACHINE}-unknown-dragonfly`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'` exit 0 ;; *:*VMS:*:*) UNAME_MACHINE=`(uname -p) 2>/dev/null` case "${UNAME_MACHINE}" in A*) echo alpha-dec-vms && exit 0 ;; I*) echo ia64-dec-vms && exit 0 ;; V*) echo vax-dec-vms && exit 0 ;; esac esac #echo '(No uname command or uname output not recognized.)' 1>&2 #echo "${UNAME_MACHINE}:${UNAME_SYSTEM}:${UNAME_RELEASE}:${UNAME_VERSION}" 1>&2 eval $set_cc_for_build cat >$dummy.c < # include #endif main () { #if defined (sony) #if defined (MIPSEB) /* BFD wants "bsd" instead of "newsos". Perhaps BFD should be changed, I don't know.... */ printf ("mips-sony-bsd\n"); exit (0); #else #include printf ("m68k-sony-newsos%s\n", #ifdef NEWSOS4 "4" #else "" #endif ); exit (0); #endif #endif #if defined (__arm) && defined (__acorn) && defined (__unix) printf ("arm-acorn-riscix"); exit (0); #endif #if defined (hp300) && !defined (hpux) printf ("m68k-hp-bsd\n"); exit (0); #endif #if defined (NeXT) #if !defined (__ARCHITECTURE__) #define __ARCHITECTURE__ "m68k" #endif int version; version=`(hostinfo | sed -n 's/.*NeXT Mach \([0-9]*\).*/\1/p') 2>/dev/null`; if (version < 4) printf ("%s-next-nextstep%d\n", __ARCHITECTURE__, version); else printf ("%s-next-openstep%d\n", __ARCHITECTURE__, version); exit (0); #endif #if defined (MULTIMAX) || defined (n16) #if defined (UMAXV) printf ("ns32k-encore-sysv\n"); exit (0); #else #if defined (CMU) printf ("ns32k-encore-mach\n"); exit (0); #else printf ("ns32k-encore-bsd\n"); exit (0); #endif #endif #endif #if defined (__386BSD__) printf ("i386-pc-bsd\n"); exit (0); #endif #if defined (sequent) #if defined (i386) printf ("i386-sequent-dynix\n"); exit (0); #endif #if defined (ns32000) printf ("ns32k-sequent-dynix\n"); exit (0); #endif #endif #if defined (_SEQUENT_) struct utsname un; uname(&un); if (strncmp(un.version, "V2", 2) == 0) { printf ("i386-sequent-ptx2\n"); exit (0); } if (strncmp(un.version, "V1", 2) == 0) { /* XXX is V1 correct? */ printf ("i386-sequent-ptx1\n"); exit (0); } printf ("i386-sequent-ptx\n"); exit (0); #endif #if defined (vax) # if !defined (ultrix) # include # if defined (BSD) # if BSD == 43 printf ("vax-dec-bsd4.3\n"); exit (0); # else # if BSD == 199006 printf ("vax-dec-bsd4.3reno\n"); exit (0); # else printf ("vax-dec-bsd\n"); exit (0); # endif # endif # else printf ("vax-dec-bsd\n"); exit (0); # endif # else printf ("vax-dec-ultrix\n"); exit (0); # endif #endif #if defined (alliant) && defined (i860) printf ("i860-alliant-bsd\n"); exit (0); #endif exit (1); } EOF $CC_FOR_BUILD -o $dummy $dummy.c 2>/dev/null && $dummy && exit 0 # Apollos put the system type in the environment. test -d /usr/apollo && { echo ${ISP}-apollo-${SYSTYPE}; exit 0; } # Convex versions that predate uname can use getsysinfo(1) if [ -x /usr/convex/getsysinfo ] then case `getsysinfo -f cpu_type` in c1*) echo c1-convex-bsd exit 0 ;; c2*) if getsysinfo -f scalar_acc then echo c32-convex-bsd else echo c2-convex-bsd fi exit 0 ;; c34*) echo c34-convex-bsd exit 0 ;; c38*) echo c38-convex-bsd exit 0 ;; c4*) echo c4-convex-bsd exit 0 ;; esac fi cat >&2 < in order to provide the needed information to handle your system. config.guess timestamp = $timestamp uname -m = `(uname -m) 2>/dev/null || echo unknown` uname -r = `(uname -r) 2>/dev/null || echo unknown` uname -s = `(uname -s) 2>/dev/null || echo unknown` uname -v = `(uname -v) 2>/dev/null || echo unknown` /usr/bin/uname -p = `(/usr/bin/uname -p) 2>/dev/null` /bin/uname -X = `(/bin/uname -X) 2>/dev/null` hostinfo = `(hostinfo) 2>/dev/null` /bin/universe = `(/bin/universe) 2>/dev/null` /usr/bin/arch -k = `(/usr/bin/arch -k) 2>/dev/null` /bin/arch = `(/bin/arch) 2>/dev/null` /usr/bin/oslevel = `(/usr/bin/oslevel) 2>/dev/null` /usr/convex/getsysinfo = `(/usr/convex/getsysinfo) 2>/dev/null` UNAME_MACHINE = ${UNAME_MACHINE} UNAME_RELEASE = ${UNAME_RELEASE} UNAME_SYSTEM = ${UNAME_SYSTEM} UNAME_VERSION = ${UNAME_VERSION} EOF exit 1 # Local variables: # eval: (add-hook 'write-file-hooks 'time-stamp) # time-stamp-start: "timestamp='" # time-stamp-format: "%:y-%02m-%02d" # time-stamp-end: "'" # End: CCfits/config/config.sub0000755000225700000360000007511310521752453014762 0ustar cagordonlhea#! /bin/sh # Configuration validation subroutine script. # Copyright (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999, # 2000, 2001, 2002, 2003, 2004 Free Software Foundation, Inc. timestamp='2004-08-29' # This file is (in principle) common to ALL GNU software. # The presence of a machine in this file suggests that SOME GNU software # can handle that machine. It does not imply ALL GNU software can. # # This file is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place - Suite 330, # Boston, MA 02111-1307, USA. # As a special exception to the GNU General Public License, if you # distribute this file as part of a program that contains a # configuration script generated by Autoconf, you may include it under # the same distribution terms that you use for the rest of that program. # Please send patches to . Submit a context # diff and a properly formatted ChangeLog entry. # # Configuration subroutine to validate and canonicalize a configuration type. # Supply the specified configuration type as an argument. # If it is invalid, we print an error message on stderr and exit with code 1. # Otherwise, we print the canonical config type on stdout and succeed. # This file is supposed to be the same for all GNU packages # and recognize all the CPU types, system types and aliases # that are meaningful with *any* GNU software. # Each package is responsible for reporting which valid configurations # it does not support. The user should be able to distinguish # a failure to support a valid configuration from a meaningless # configuration. # The goal of this file is to map all the various variations of a given # machine specification into a single specification in the form: # CPU_TYPE-MANUFACTURER-OPERATING_SYSTEM # or in some cases, the newer four-part form: # CPU_TYPE-MANUFACTURER-KERNEL-OPERATING_SYSTEM # It is wrong to echo any other type of specification. me=`echo "$0" | sed -e 's,.*/,,'` usage="\ Usage: $0 [OPTION] CPU-MFR-OPSYS $0 [OPTION] ALIAS Canonicalize a configuration name. Operation modes: -h, --help print this help, then exit -t, --time-stamp print date of last modification, then exit -v, --version print version number, then exit Report bugs and patches to ." version="\ GNU config.sub ($timestamp) Copyright (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE." help=" Try \`$me --help' for more information." # Parse command line while test $# -gt 0 ; do case $1 in --time-stamp | --time* | -t ) echo "$timestamp" ; exit 0 ;; --version | -v ) echo "$version" ; exit 0 ;; --help | --h* | -h ) echo "$usage"; exit 0 ;; -- ) # Stop option processing shift; break ;; - ) # Use stdin as input. break ;; -* ) echo "$me: invalid option $1$help" exit 1 ;; *local*) # First pass through any local machine types. echo $1 exit 0;; * ) break ;; esac done case $# in 0) echo "$me: missing argument$help" >&2 exit 1;; 1) ;; *) echo "$me: too many arguments$help" >&2 exit 1;; esac # Separate what the user gave into CPU-COMPANY and OS or KERNEL-OS (if any). # Here we must recognize all the valid KERNEL-OS combinations. maybe_os=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\2/'` case $maybe_os in nto-qnx* | linux-gnu* | linux-dietlibc | linux-uclibc* | uclinux-uclibc* | uclinux-gnu* | \ kfreebsd*-gnu* | knetbsd*-gnu* | netbsd*-gnu* | storm-chaos* | os2-emx* | rtmk-nova*) os=-$maybe_os basic_machine=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\1/'` ;; *) basic_machine=`echo $1 | sed 's/-[^-]*$//'` if [ $basic_machine != $1 ] then os=`echo $1 | sed 's/.*-/-/'` else os=; fi ;; esac ### Let's recognize common machines as not being operating systems so ### that things like config.sub decstation-3100 work. We also ### recognize some manufacturers as not being operating systems, so we ### can provide default operating systems below. case $os in -sun*os*) # Prevent following clause from handling this invalid input. ;; -dec* | -mips* | -sequent* | -encore* | -pc532* | -sgi* | -sony* | \ -att* | -7300* | -3300* | -delta* | -motorola* | -sun[234]* | \ -unicom* | -ibm* | -next | -hp | -isi* | -apollo | -altos* | \ -convergent* | -ncr* | -news | -32* | -3600* | -3100* | -hitachi* |\ -c[123]* | -convex* | -sun | -crds | -omron* | -dg | -ultra | -tti* | \ -harris | -dolphin | -highlevel | -gould | -cbm | -ns | -masscomp | \ -apple | -axis | -knuth | -cray) os= basic_machine=$1 ;; -sim | -cisco | -oki | -wec | -winbond) os= basic_machine=$1 ;; -scout) ;; -wrs) os=-vxworks basic_machine=$1 ;; -chorusos*) os=-chorusos basic_machine=$1 ;; -chorusrdb) os=-chorusrdb basic_machine=$1 ;; -hiux*) os=-hiuxwe2 ;; -sco5) os=-sco3.2v5 basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'` ;; -sco4) os=-sco3.2v4 basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'` ;; -sco3.2.[4-9]*) os=`echo $os | sed -e 's/sco3.2./sco3.2v/'` basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'` ;; -sco3.2v[4-9]*) # Don't forget version if it is 3.2v4 or newer. basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'` ;; -sco*) os=-sco3.2v2 basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'` ;; -udk*) basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'` ;; -isc) os=-isc2.2 basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'` ;; -clix*) basic_machine=clipper-intergraph ;; -isc*) basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'` ;; -lynx*) os=-lynxos ;; -ptx*) basic_machine=`echo $1 | sed -e 's/86-.*/86-sequent/'` ;; -windowsnt*) os=`echo $os | sed -e 's/windowsnt/winnt/'` ;; -psos*) os=-psos ;; -mint | -mint[0-9]*) basic_machine=m68k-atari os=-mint ;; esac # Decode aliases for certain CPU-COMPANY combinations. case $basic_machine in # Recognize the basic CPU types without company name. # Some are omitted here because they have special meanings below. 1750a | 580 \ | a29k \ | alpha | alphaev[4-8] | alphaev56 | alphaev6[78] | alphapca5[67] \ | alpha64 | alpha64ev[4-8] | alpha64ev56 | alpha64ev6[78] | alpha64pca5[67] \ | am33_2.0 \ | arc | arm | arm[bl]e | arme[lb] | armv[2345] | armv[345][lb] | avr \ | c4x | clipper \ | d10v | d30v | dlx | dsp16xx \ | fr30 | frv \ | h8300 | h8500 | hppa | hppa1.[01] | hppa2.0 | hppa2.0[nw] | hppa64 \ | i370 | i860 | i960 | ia64 \ | ip2k | iq2000 \ | m32r | m32rle | m68000 | m68k | m88k | mcore \ | mips | mipsbe | mipseb | mipsel | mipsle \ | mips16 \ | mips64 | mips64el \ | mips64vr | mips64vrel \ | mips64orion | mips64orionel \ | mips64vr4100 | mips64vr4100el \ | mips64vr4300 | mips64vr4300el \ | mips64vr5000 | mips64vr5000el \ | mipsisa32 | mipsisa32el \ | mipsisa32r2 | mipsisa32r2el \ | mipsisa64 | mipsisa64el \ | mipsisa64r2 | mipsisa64r2el \ | mipsisa64sb1 | mipsisa64sb1el \ | mipsisa64sr71k | mipsisa64sr71kel \ | mipstx39 | mipstx39el \ | mn10200 | mn10300 \ | msp430 \ | ns16k | ns32k \ | openrisc | or32 \ | pdp10 | pdp11 | pj | pjl \ | powerpc | powerpc64 | powerpc64le | powerpcle | ppcbe \ | pyramid \ | sh | sh[1234] | sh[23]e | sh[34]eb | shbe | shle | sh[1234]le | sh3ele \ | sh64 | sh64le \ | sparc | sparc64 | sparc86x | sparclet | sparclite | sparcv8 | sparcv9 | sparcv9b \ | strongarm \ | tahoe | thumb | tic4x | tic80 | tron \ | v850 | v850e \ | we32k \ | x86 | xscale | xstormy16 | xtensa \ | z8k) basic_machine=$basic_machine-unknown ;; m6811 | m68hc11 | m6812 | m68hc12) # Motorola 68HC11/12. basic_machine=$basic_machine-unknown os=-none ;; m88110 | m680[12346]0 | m683?2 | m68360 | m5200 | v70 | w65 | z8k) ;; # We use `pc' rather than `unknown' # because (1) that's what they normally are, and # (2) the word "unknown" tends to confuse beginning users. i*86 | x86_64) basic_machine=$basic_machine-pc ;; # Object if more than one company name word. *-*-*) echo Invalid configuration \`$1\': machine \`$basic_machine\' not recognized 1>&2 exit 1 ;; # Recognize the basic CPU types with company name. 580-* \ | a29k-* \ | alpha-* | alphaev[4-8]-* | alphaev56-* | alphaev6[78]-* \ | alpha64-* | alpha64ev[4-8]-* | alpha64ev56-* | alpha64ev6[78]-* \ | alphapca5[67]-* | alpha64pca5[67]-* | arc-* \ | arm-* | armbe-* | armle-* | armeb-* | armv*-* \ | avr-* \ | bs2000-* \ | c[123]* | c30-* | [cjt]90-* | c4x-* | c54x-* | c55x-* | c6x-* \ | clipper-* | craynv-* | cydra-* \ | d10v-* | d30v-* | dlx-* \ | elxsi-* \ | f30[01]-* | f700-* | fr30-* | frv-* | fx80-* \ | h8300-* | h8500-* \ | hppa-* | hppa1.[01]-* | hppa2.0-* | hppa2.0[nw]-* | hppa64-* \ | i*86-* | i860-* | i960-* | ia64-* \ | ip2k-* | iq2000-* \ | m32r-* | m32rle-* \ | m68000-* | m680[012346]0-* | m68360-* | m683?2-* | m68k-* \ | m88110-* | m88k-* | mcore-* \ | mips-* | mipsbe-* | mipseb-* | mipsel-* | mipsle-* \ | mips16-* \ | mips64-* | mips64el-* \ | mips64vr-* | mips64vrel-* \ | mips64orion-* | mips64orionel-* \ | mips64vr4100-* | mips64vr4100el-* \ | mips64vr4300-* | mips64vr4300el-* \ | mips64vr5000-* | mips64vr5000el-* \ | mipsisa32-* | mipsisa32el-* \ | mipsisa32r2-* | mipsisa32r2el-* \ | mipsisa64-* | mipsisa64el-* \ | mipsisa64r2-* | mipsisa64r2el-* \ | mipsisa64sb1-* | mipsisa64sb1el-* \ | mipsisa64sr71k-* | mipsisa64sr71kel-* \ | mipstx39-* | mipstx39el-* \ | mmix-* \ | msp430-* \ | none-* | np1-* | ns16k-* | ns32k-* \ | orion-* \ | pdp10-* | pdp11-* | pj-* | pjl-* | pn-* | power-* \ | powerpc-* | powerpc64-* | powerpc64le-* | powerpcle-* | ppcbe-* \ | pyramid-* \ | romp-* | rs6000-* \ | sh-* | sh[1234]-* | sh[23]e-* | sh[34]eb-* | shbe-* \ | shle-* | sh[1234]le-* | sh3ele-* | sh64-* | sh64le-* \ | sparc-* | sparc64-* | sparc86x-* | sparclet-* | sparclite-* \ | sparcv8-* | sparcv9-* | sparcv9b-* | strongarm-* | sv1-* | sx?-* \ | tahoe-* | thumb-* \ | tic30-* | tic4x-* | tic54x-* | tic55x-* | tic6x-* | tic80-* \ | tron-* \ | v850-* | v850e-* | vax-* \ | we32k-* \ | x86-* | x86_64-* | xps100-* | xscale-* | xstormy16-* \ | xtensa-* \ | ymp-* \ | z8k-*) ;; # Recognize the various machine names and aliases which stand # for a CPU type and a company and sometimes even an OS. 386bsd) basic_machine=i386-unknown os=-bsd ;; 3b1 | 7300 | 7300-att | att-7300 | pc7300 | safari | unixpc) basic_machine=m68000-att ;; 3b*) basic_machine=we32k-att ;; a29khif) basic_machine=a29k-amd os=-udi ;; abacus) basic_machine=abacus-unknown ;; adobe68k) basic_machine=m68010-adobe os=-scout ;; alliant | fx80) basic_machine=fx80-alliant ;; altos | altos3068) basic_machine=m68k-altos ;; am29k) basic_machine=a29k-none os=-bsd ;; amd64) basic_machine=x86_64-pc ;; amd64-*) basic_machine=x86_64-`echo $basic_machine | sed 's/^[^-]*-//'` ;; amdahl) basic_machine=580-amdahl os=-sysv ;; amiga | amiga-*) basic_machine=m68k-unknown ;; amigaos | amigados) basic_machine=m68k-unknown os=-amigaos ;; amigaunix | amix) basic_machine=m68k-unknown os=-sysv4 ;; apollo68) basic_machine=m68k-apollo os=-sysv ;; apollo68bsd) basic_machine=m68k-apollo os=-bsd ;; aux) basic_machine=m68k-apple os=-aux ;; balance) basic_machine=ns32k-sequent os=-dynix ;; c90) basic_machine=c90-cray os=-unicos ;; convex-c1) basic_machine=c1-convex os=-bsd ;; convex-c2) basic_machine=c2-convex os=-bsd ;; convex-c32) basic_machine=c32-convex os=-bsd ;; convex-c34) basic_machine=c34-convex os=-bsd ;; convex-c38) basic_machine=c38-convex os=-bsd ;; cray | j90) basic_machine=j90-cray os=-unicos ;; craynv) basic_machine=craynv-cray os=-unicosmp ;; cr16c) basic_machine=cr16c-unknown os=-elf ;; crds | unos) basic_machine=m68k-crds ;; crisv32 | crisv32-* | etraxfs*) basic_machine=crisv32-axis ;; cris | cris-* | etrax*) basic_machine=cris-axis ;; crx) basic_machine=crx-unknown os=-elf ;; da30 | da30-*) basic_machine=m68k-da30 ;; decstation | decstation-3100 | pmax | pmax-* | pmin | dec3100 | decstatn) basic_machine=mips-dec ;; decsystem10* | dec10*) basic_machine=pdp10-dec os=-tops10 ;; decsystem20* | dec20*) basic_machine=pdp10-dec os=-tops20 ;; delta | 3300 | motorola-3300 | motorola-delta \ | 3300-motorola | delta-motorola) basic_machine=m68k-motorola ;; delta88) basic_machine=m88k-motorola os=-sysv3 ;; dpx20 | dpx20-*) basic_machine=rs6000-bull os=-bosx ;; dpx2* | dpx2*-bull) basic_machine=m68k-bull os=-sysv3 ;; ebmon29k) basic_machine=a29k-amd os=-ebmon ;; elxsi) basic_machine=elxsi-elxsi os=-bsd ;; encore | umax | mmax) basic_machine=ns32k-encore ;; es1800 | OSE68k | ose68k | ose | OSE) basic_machine=m68k-ericsson os=-ose ;; fx2800) basic_machine=i860-alliant ;; genix) basic_machine=ns32k-ns ;; gmicro) basic_machine=tron-gmicro os=-sysv ;; go32) basic_machine=i386-pc os=-go32 ;; h3050r* | hiux*) basic_machine=hppa1.1-hitachi os=-hiuxwe2 ;; h8300hms) basic_machine=h8300-hitachi os=-hms ;; h8300xray) basic_machine=h8300-hitachi os=-xray ;; h8500hms) basic_machine=h8500-hitachi os=-hms ;; harris) basic_machine=m88k-harris os=-sysv3 ;; hp300-*) basic_machine=m68k-hp ;; hp300bsd) basic_machine=m68k-hp os=-bsd ;; hp300hpux) basic_machine=m68k-hp os=-hpux ;; hp3k9[0-9][0-9] | hp9[0-9][0-9]) basic_machine=hppa1.0-hp ;; hp9k2[0-9][0-9] | hp9k31[0-9]) basic_machine=m68000-hp ;; hp9k3[2-9][0-9]) basic_machine=m68k-hp ;; hp9k6[0-9][0-9] | hp6[0-9][0-9]) basic_machine=hppa1.0-hp ;; hp9k7[0-79][0-9] | hp7[0-79][0-9]) basic_machine=hppa1.1-hp ;; hp9k78[0-9] | hp78[0-9]) # FIXME: really hppa2.0-hp basic_machine=hppa1.1-hp ;; hp9k8[67]1 | hp8[67]1 | hp9k80[24] | hp80[24] | hp9k8[78]9 | hp8[78]9 | hp9k893 | hp893) # FIXME: really hppa2.0-hp basic_machine=hppa1.1-hp ;; hp9k8[0-9][13679] | hp8[0-9][13679]) basic_machine=hppa1.1-hp ;; hp9k8[0-9][0-9] | hp8[0-9][0-9]) basic_machine=hppa1.0-hp ;; hppa-next) os=-nextstep3 ;; hppaosf) basic_machine=hppa1.1-hp os=-osf ;; hppro) basic_machine=hppa1.1-hp os=-proelf ;; i370-ibm* | ibm*) basic_machine=i370-ibm ;; # I'm not sure what "Sysv32" means. Should this be sysv3.2? i*86v32) basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'` os=-sysv32 ;; i*86v4*) basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'` os=-sysv4 ;; i*86v) basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'` os=-sysv ;; i*86sol2) basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'` os=-solaris2 ;; i386mach) basic_machine=i386-mach os=-mach ;; i386-vsta | vsta) basic_machine=i386-unknown os=-vsta ;; iris | iris4d) basic_machine=mips-sgi case $os in -irix*) ;; *) os=-irix4 ;; esac ;; isi68 | isi) basic_machine=m68k-isi os=-sysv ;; m88k-omron*) basic_machine=m88k-omron ;; magnum | m3230) basic_machine=mips-mips os=-sysv ;; merlin) basic_machine=ns32k-utek os=-sysv ;; mingw32) basic_machine=i386-pc os=-mingw32 ;; miniframe) basic_machine=m68000-convergent ;; *mint | -mint[0-9]* | *MiNT | *MiNT[0-9]*) basic_machine=m68k-atari os=-mint ;; mips3*-*) basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'` ;; mips3*) basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'`-unknown ;; monitor) basic_machine=m68k-rom68k os=-coff ;; morphos) basic_machine=powerpc-unknown os=-morphos ;; msdos) basic_machine=i386-pc os=-msdos ;; mvs) basic_machine=i370-ibm os=-mvs ;; ncr3000) basic_machine=i486-ncr os=-sysv4 ;; netbsd386) basic_machine=i386-unknown os=-netbsd ;; netwinder) basic_machine=armv4l-rebel os=-linux ;; news | news700 | news800 | news900) basic_machine=m68k-sony os=-newsos ;; news1000) basic_machine=m68030-sony os=-newsos ;; news-3600 | risc-news) basic_machine=mips-sony os=-newsos ;; necv70) basic_machine=v70-nec os=-sysv ;; next | m*-next ) basic_machine=m68k-next case $os in -nextstep* ) ;; -ns2*) os=-nextstep2 ;; *) os=-nextstep3 ;; esac ;; nh3000) basic_machine=m68k-harris os=-cxux ;; nh[45]000) basic_machine=m88k-harris os=-cxux ;; nindy960) basic_machine=i960-intel os=-nindy ;; mon960) basic_machine=i960-intel os=-mon960 ;; nonstopux) basic_machine=mips-compaq os=-nonstopux ;; np1) basic_machine=np1-gould ;; nsr-tandem) basic_machine=nsr-tandem ;; op50n-* | op60c-*) basic_machine=hppa1.1-oki os=-proelf ;; or32 | or32-*) basic_machine=or32-unknown os=-coff ;; os400) basic_machine=powerpc-ibm os=-os400 ;; OSE68000 | ose68000) basic_machine=m68000-ericsson os=-ose ;; os68k) basic_machine=m68k-none os=-os68k ;; pa-hitachi) basic_machine=hppa1.1-hitachi os=-hiuxwe2 ;; paragon) basic_machine=i860-intel os=-osf ;; pbd) basic_machine=sparc-tti ;; pbb) basic_machine=m68k-tti ;; pc532 | pc532-*) basic_machine=ns32k-pc532 ;; pentium | p5 | k5 | k6 | nexgen | viac3) basic_machine=i586-pc ;; pentiumpro | p6 | 6x86 | athlon | athlon_*) basic_machine=i686-pc ;; pentiumii | pentium2 | pentiumiii | pentium3) basic_machine=i686-pc ;; pentium4) basic_machine=i786-pc ;; pentium-* | p5-* | k5-* | k6-* | nexgen-* | viac3-*) basic_machine=i586-`echo $basic_machine | sed 's/^[^-]*-//'` ;; pentiumpro-* | p6-* | 6x86-* | athlon-*) basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'` ;; pentiumii-* | pentium2-* | pentiumiii-* | pentium3-*) basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'` ;; pentium4-*) basic_machine=i786-`echo $basic_machine | sed 's/^[^-]*-//'` ;; pn) basic_machine=pn-gould ;; power) basic_machine=power-ibm ;; ppc) basic_machine=powerpc-unknown ;; ppc-*) basic_machine=powerpc-`echo $basic_machine | sed 's/^[^-]*-//'` ;; ppcle | powerpclittle | ppc-le | powerpc-little) basic_machine=powerpcle-unknown ;; ppcle-* | powerpclittle-*) basic_machine=powerpcle-`echo $basic_machine | sed 's/^[^-]*-//'` ;; ppc64) basic_machine=powerpc64-unknown ;; ppc64-*) basic_machine=powerpc64-`echo $basic_machine | sed 's/^[^-]*-//'` ;; ppc64le | powerpc64little | ppc64-le | powerpc64-little) basic_machine=powerpc64le-unknown ;; ppc64le-* | powerpc64little-*) basic_machine=powerpc64le-`echo $basic_machine | sed 's/^[^-]*-//'` ;; ps2) basic_machine=i386-ibm ;; pw32) basic_machine=i586-unknown os=-pw32 ;; rom68k) basic_machine=m68k-rom68k os=-coff ;; rm[46]00) basic_machine=mips-siemens ;; rtpc | rtpc-*) basic_machine=romp-ibm ;; s390 | s390-*) basic_machine=s390-ibm ;; s390x | s390x-*) basic_machine=s390x-ibm ;; sa29200) basic_machine=a29k-amd os=-udi ;; sb1) basic_machine=mipsisa64sb1-unknown ;; sb1el) basic_machine=mipsisa64sb1el-unknown ;; sei) basic_machine=mips-sei os=-seiux ;; sequent) basic_machine=i386-sequent ;; sh) basic_machine=sh-hitachi os=-hms ;; sh64) basic_machine=sh64-unknown ;; sparclite-wrs | simso-wrs) basic_machine=sparclite-wrs os=-vxworks ;; sps7) basic_machine=m68k-bull os=-sysv2 ;; spur) basic_machine=spur-unknown ;; st2000) basic_machine=m68k-tandem ;; stratus) basic_machine=i860-stratus os=-sysv4 ;; sun2) basic_machine=m68000-sun ;; sun2os3) basic_machine=m68000-sun os=-sunos3 ;; sun2os4) basic_machine=m68000-sun os=-sunos4 ;; sun3os3) basic_machine=m68k-sun os=-sunos3 ;; sun3os4) basic_machine=m68k-sun os=-sunos4 ;; sun4os3) basic_machine=sparc-sun os=-sunos3 ;; sun4os4) basic_machine=sparc-sun os=-sunos4 ;; sun4sol2) basic_machine=sparc-sun os=-solaris2 ;; sun3 | sun3-*) basic_machine=m68k-sun ;; sun4) basic_machine=sparc-sun ;; sun386 | sun386i | roadrunner) basic_machine=i386-sun ;; sv1) basic_machine=sv1-cray os=-unicos ;; symmetry) basic_machine=i386-sequent os=-dynix ;; t3e) basic_machine=alphaev5-cray os=-unicos ;; t90) basic_machine=t90-cray os=-unicos ;; tic54x | c54x*) basic_machine=tic54x-unknown os=-coff ;; tic55x | c55x*) basic_machine=tic55x-unknown os=-coff ;; tic6x | c6x*) basic_machine=tic6x-unknown os=-coff ;; tx39) basic_machine=mipstx39-unknown ;; tx39el) basic_machine=mipstx39el-unknown ;; toad1) basic_machine=pdp10-xkl os=-tops20 ;; tower | tower-32) basic_machine=m68k-ncr ;; tpf) basic_machine=s390x-ibm os=-tpf ;; udi29k) basic_machine=a29k-amd os=-udi ;; ultra3) basic_machine=a29k-nyu os=-sym1 ;; v810 | necv810) basic_machine=v810-nec os=-none ;; vaxv) basic_machine=vax-dec os=-sysv ;; vms) basic_machine=vax-dec os=-vms ;; vpp*|vx|vx-*) basic_machine=f301-fujitsu ;; vxworks960) basic_machine=i960-wrs os=-vxworks ;; vxworks68) basic_machine=m68k-wrs os=-vxworks ;; vxworks29k) basic_machine=a29k-wrs os=-vxworks ;; w65*) basic_machine=w65-wdc os=-none ;; w89k-*) basic_machine=hppa1.1-winbond os=-proelf ;; xps | xps100) basic_machine=xps100-honeywell ;; ymp) basic_machine=ymp-cray os=-unicos ;; z8k-*-coff) basic_machine=z8k-unknown os=-sim ;; none) basic_machine=none-none os=-none ;; # Here we handle the default manufacturer of certain CPU types. It is in # some cases the only manufacturer, in others, it is the most popular. w89k) basic_machine=hppa1.1-winbond ;; op50n) basic_machine=hppa1.1-oki ;; op60c) basic_machine=hppa1.1-oki ;; romp) basic_machine=romp-ibm ;; mmix) basic_machine=mmix-knuth ;; rs6000) basic_machine=rs6000-ibm ;; vax) basic_machine=vax-dec ;; pdp10) # there are many clones, so DEC is not a safe bet basic_machine=pdp10-unknown ;; pdp11) basic_machine=pdp11-dec ;; we32k) basic_machine=we32k-att ;; sh3 | sh4 | sh[34]eb | sh[1234]le | sh[23]ele) basic_machine=sh-unknown ;; sh64) basic_machine=sh64-unknown ;; sparc | sparcv8 | sparcv9 | sparcv9b) basic_machine=sparc-sun ;; cydra) basic_machine=cydra-cydrome ;; orion) basic_machine=orion-highlevel ;; orion105) basic_machine=clipper-highlevel ;; mac | mpw | mac-mpw) basic_machine=m68k-apple ;; pmac | pmac-mpw) basic_machine=powerpc-apple ;; *-unknown) # Make sure to match an already-canonicalized machine name. ;; *) echo Invalid configuration \`$1\': machine \`$basic_machine\' not recognized 1>&2 exit 1 ;; esac # Here we canonicalize certain aliases for manufacturers. case $basic_machine in *-digital*) basic_machine=`echo $basic_machine | sed 's/digital.*/dec/'` ;; *-commodore*) basic_machine=`echo $basic_machine | sed 's/commodore.*/cbm/'` ;; *) ;; esac # Decode manufacturer-specific aliases for certain operating systems. if [ x"$os" != x"" ] then case $os in # First match some system type aliases # that might get confused with valid system types. # -solaris* is a basic system type, with this one exception. -solaris1 | -solaris1.*) os=`echo $os | sed -e 's|solaris1|sunos4|'` ;; -solaris) os=-solaris2 ;; -svr4*) os=-sysv4 ;; -unixware*) os=-sysv4.2uw ;; -gnu/linux*) os=`echo $os | sed -e 's|gnu/linux|linux-gnu|'` ;; # First accept the basic system types. # The portable systems comes first. # Each alternative MUST END IN A *, to match a version number. # -sysv* is not here because it comes later, after sysvr4. -gnu* | -bsd* | -mach* | -minix* | -genix* | -ultrix* | -irix* \ | -*vms* | -sco* | -esix* | -isc* | -aix* | -sunos | -sunos[34]*\ | -hpux* | -unos* | -osf* | -luna* | -dgux* | -solaris* | -sym* \ | -amigaos* | -amigados* | -msdos* | -newsos* | -unicos* | -aof* \ | -aos* \ | -nindy* | -vxsim* | -vxworks* | -ebmon* | -hms* | -mvs* \ | -clix* | -riscos* | -uniplus* | -iris* | -rtu* | -xenix* \ | -hiux* | -386bsd* | -knetbsd* | -mirbsd* | -netbsd* | -openbsd* \ | -ekkobsd* | -kfreebsd* | -freebsd* | -riscix* | -lynxos* \ | -bosx* | -nextstep* | -cxux* | -aout* | -elf* | -oabi* \ | -ptx* | -coff* | -ecoff* | -winnt* | -domain* | -vsta* \ | -udi* | -eabi* | -lites* | -ieee* | -go32* | -aux* \ | -chorusos* | -chorusrdb* \ | -cygwin* | -pe* | -psos* | -moss* | -proelf* | -rtems* \ | -mingw32* | -linux-gnu* | -linux-uclibc* | -uxpv* | -beos* | -mpeix* | -udk* \ | -interix* | -uwin* | -mks* | -rhapsody* | -darwin* | -opened* \ | -openstep* | -oskit* | -conix* | -pw32* | -nonstopux* \ | -storm-chaos* | -tops10* | -tenex* | -tops20* | -its* \ | -os2* | -vos* | -palmos* | -uclinux* | -nucleus* \ | -morphos* | -superux* | -rtmk* | -rtmk-nova* | -windiss* \ | -powermax* | -dnix* | -nx6 | -nx7 | -sei* | -dragonfly*) # Remember, each alternative MUST END IN *, to match a version number. ;; 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See the # GNU General Public License for more details. # You should have received a copy of the GNU General Public License # along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA # 02111-1307, USA. # As a special exception to the GNU General Public License, if you # distribute this file as part of a program that contains a # configuration script generated by Autoconf, you may include it under # the same distribution terms that you use for the rest of that program. # Originally written by Alexandre Oliva . case $1 in '') echo "$0: No command. Try \`$0 --help' for more information." 1>&2 exit 1; ;; -h | --h*) cat <<\EOF Usage: depcomp [--help] [--version] PROGRAM [ARGS] Run PROGRAMS ARGS to compile a file, generating dependencies as side-effects. Environment variables: depmode Dependency tracking mode. source Source file read by `PROGRAMS ARGS'. object Object file output by `PROGRAMS ARGS'. DEPDIR directory where to store dependencies. depfile Dependency file to output. tmpdepfile Temporary file to use when outputing dependencies. libtool Whether libtool is used (yes/no). Report bugs to . EOF exit 0 ;; -v | --v*) echo "depcomp $scriptversion" exit 0 ;; esac if test -z "$depmode" || test -z "$source" || test -z "$object"; then echo "depcomp: Variables source, object and depmode must be set" 1>&2 exit 1 fi # Dependencies for sub/bar.o or sub/bar.obj go into sub/.deps/bar.Po. depfile=${depfile-`echo "$object" | sed 's|[^\\/]*$|'${DEPDIR-.deps}'/&|;s|\.\([^.]*\)$|.P\1|;s|Pobj$|Po|'`} tmpdepfile=${tmpdepfile-`echo "$depfile" | sed 's/\.\([^.]*\)$/.T\1/'`} rm -f "$tmpdepfile" # Some modes work just like other modes, but use different flags. We # parameterize here, but still list the modes in the big case below, # to make depend.m4 easier to write. Note that we *cannot* use a case # here, because this file can only contain one case statement. if test "$depmode" = hp; then # HP compiler uses -M and no extra arg. gccflag=-M depmode=gcc fi if test "$depmode" = dashXmstdout; then # This is just like dashmstdout with a different argument. dashmflag=-xM depmode=dashmstdout fi case "$depmode" in gcc3) ## gcc 3 implements dependency tracking that does exactly what ## we want. Yay! Note: for some reason libtool 1.4 doesn't like ## it if -MD -MP comes after the -MF stuff. Hmm. "$@" -MT "$object" -MD -MP -MF "$tmpdepfile" stat=$? if test $stat -eq 0; then : else rm -f "$tmpdepfile" exit $stat fi mv "$tmpdepfile" "$depfile" ;; gcc) ## There are various ways to get dependency output from gcc. Here's ## why we pick this rather obscure method: ## - Don't want to use -MD because we'd like the dependencies to end ## up in a subdir. Having to rename by hand is ugly. ## (We might end up doing this anyway to support other compilers.) ## - The DEPENDENCIES_OUTPUT environment variable makes gcc act like ## -MM, not -M (despite what the docs say). ## - Using -M directly means running the compiler twice (even worse ## than renaming). if test -z "$gccflag"; then gccflag=-MD, fi "$@" -Wp,"$gccflag$tmpdepfile" stat=$? if test $stat -eq 0; then : else rm -f "$tmpdepfile" exit $stat fi rm -f "$depfile" echo "$object : \\" > "$depfile" alpha=ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz ## The second -e expression handles DOS-style file names with drive letters. sed -e 's/^[^:]*: / /' \ -e 's/^['$alpha']:\/[^:]*: / /' < "$tmpdepfile" >> "$depfile" ## This next piece of magic avoids the `deleted header file' problem. ## The problem is that when a header file which appears in a .P file ## is deleted, the dependency causes make to die (because there is ## typically no way to rebuild the header). We avoid this by adding ## dummy dependencies for each header file. Too bad gcc doesn't do ## this for us directly. tr ' ' ' ' < "$tmpdepfile" | ## Some versions of gcc put a space before the `:'. On the theory ## that the space means something, we add a space to the output as ## well. ## Some versions of the HPUX 10.20 sed can't process this invocation ## correctly. Breaking it into two sed invocations is a workaround. sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile" rm -f "$tmpdepfile" ;; hp) # This case exists only to let depend.m4 do its work. It works by # looking at the text of this script. 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"$tmpdepfile" | sed 's% %\\ %g' | sed -n '/^\(.*\)$/ s:: \1 \\:p' >> "$depfile" echo " " >> "$depfile" . "$tmpdepfile" | sed 's% %\\ %g' | sed -n '/^\(.*\)$/ s::\1\::p' >> "$depfile" rm -f "$tmpdepfile" ;; none) exec "$@" ;; *) echo "Unknown depmode $depmode" 1>&2 exit 1 ;; esac exit 0 # Local Variables: # mode: shell-script # sh-indentation: 2 # eval: (add-hook 'write-file-hooks 'time-stamp) # time-stamp-start: "scriptversion=" # time-stamp-format: "%:y-%02m-%02d.%02H" # time-stamp-end: "$" # End: CCfits/config/install-sh0000755000225700000360000002176610521752453015010 0ustar cagordonlhea#!/bin/sh # install - install a program, script, or datafile scriptversion=2004-09-10.20 # This originates from X11R5 (mit/util/scripts/install.sh), which was # later released in X11R6 (xc/config/util/install.sh) with the # following copyright and license. # # Copyright (C) 1994 X Consortium # # Permission is hereby granted, free of charge, to any person obtaining a copy # of this software and associated documentation files (the "Software"), to # deal in the Software without restriction, including without limitation the # rights to use, copy, modify, merge, publish, distribute, sublicense, and/or # sell copies of the Software, and to permit persons to whom the Software is # furnished to do so, subject to the following conditions: # # The above copyright notice and this permission notice shall be included in # all copies or substantial portions of the Software. # # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE # X CONSORTIUM BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN # AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNEC- # TION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. # # Except as contained in this notice, the name of the X Consortium shall not # be used in advertising or otherwise to promote the sale, use or other deal- # ings in this Software without prior written authorization from the X Consor- # tium. # # # FSF changes to this file are in the public domain. # # Calling this script install-sh is preferred over install.sh, to prevent # `make' implicit rules from creating a file called install from it # when there is no Makefile. # # This script is compatible with the BSD install script, but was written # from scratch. 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See the GNU # General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. # # As a special exception to the GNU General Public License, if you # distribute this file as part of a program that contains a # configuration script generated by Autoconf, you may include it under # the same distribution terms that you use for the rest of that program. basename="s,^.*/,,g" # Work around backward compatibility issue on IRIX 6.5. 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(KAI) C++ Compiler # KCC will only create a shared library if the output file # ends with ".so" (or ".sl" for HP-UX), so rename the library # to its proper name (with version) after linking. _LT_AC_TAGVAR(archive_cmds, $1)='tempext=`echo $shared_ext | $SED -e '\''s/\([[^()0-9A-Za-z{}]]\)/\\\\\1/g'\''`; templib=`echo $lib | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib; mv \$templib $lib' _LT_AC_TAGVAR(archive_expsym_cmds, $1)='tempext=`echo $shared_ext | $SED -e '\''s/\([[^()0-9A-Za-z{}]]\)/\\\\\1/g'\''`; templib=`echo $lib | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib ${wl}-retain-symbols-file,$export_symbols; mv \$templib $lib' # Commands to make compiler produce verbose output that lists # what "hidden" libraries, object files and flags are used when # linking a shared library. # # There doesn't appear to be a way to prevent this compiler from # explicitly linking system object files so we need to strip them # from the output so that they don't get included in the library # dependencies. output_verbose_link_cmd='templist=`$CC $CFLAGS -v conftest.$objext -o libconftest$shared_ext 2>&1 | grep "ld"`; rm -f libconftest$shared_ext; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; echo $list' _LT_AC_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}--rpath,$libdir' _LT_AC_TAGVAR(export_dynamic_flag_spec, $1)='${wl}--export-dynamic' # Archives containing C++ object files must be created using # "CC -Bstatic", where "CC" is the KAI C++ compiler. _LT_AC_TAGVAR(old_archive_cmds, $1)='$CC -Bstatic -o $oldlib $oldobjs' ;; icpc*) # Intel C++ with_gnu_ld=yes # version 8.0 and above of icpc choke on multiply defined symbols # if we add $predep_objects and $postdep_objects, however 7.1 and # earlier do not add the objects themselves. case `$CC -V 2>&1` in *"Version 7."*) _LT_AC_TAGVAR(archive_cmds, $1)='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname -o $lib' _LT_AC_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib' ;; 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templist=`echo $templist | $SED "s/\(^.*ld.*\)\( .*ld .*$\)/\1/"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; echo $list' ;; esac ;; lynxos*) # FIXME: insert proper C++ library support _LT_AC_TAGVAR(ld_shlibs, $1)=no ;; m88k*) # FIXME: insert proper C++ library support _LT_AC_TAGVAR(ld_shlibs, $1)=no ;; mvs*) case $cc_basename in cxx*) # FIXME: insert proper C++ library support _LT_AC_TAGVAR(ld_shlibs, $1)=no ;; *) # FIXME: insert proper C++ library support _LT_AC_TAGVAR(ld_shlibs, $1)=no ;; esac ;; netbsd*) if echo __ELF__ | $CC -E - | grep __ELF__ >/dev/null; then _LT_AC_TAGVAR(archive_cmds, $1)='$LD -Bshareable -o $lib $predep_objects $libobjs $deplibs $postdep_objects $linker_flags' wlarc= _LT_AC_TAGVAR(hardcode_libdir_flag_spec, $1)='-R$libdir' _LT_AC_TAGVAR(hardcode_direct, $1)=yes _LT_AC_TAGVAR(hardcode_shlibpath_var, $1)=no fi # Workaround some broken pre-1.5 toolchains output_verbose_link_cmd='$CC -shared $CFLAGS -v conftest.$objext 2>&1 | grep conftest.$objext | $SED -e "s:-lgcc -lc -lgcc::"' ;; 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(KAI) C++ Compiler # KCC will only create a shared library if the output file # ends with ".so" (or ".sl" for HP-UX), so rename the library # to its proper name (with version) after linking. _LT_AC_TAGVAR(archive_cmds, $1)='tempext=`echo $shared_ext | $SED -e '\''s/\([[^()0-9A-Za-z{}]]\)/\\\\\1/g'\''`; templib=`echo $lib | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib; mv \$templib $lib' _LT_AC_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath,$libdir' _LT_AC_TAGVAR(hardcode_libdir_separator, $1)=: # Archives containing C++ object files must be created using # "CC -Bstatic", where "CC" is the KAI C++ compiler. _LT_AC_TAGVAR(old_archive_cmds, $1)='$CC -Bstatic -o $oldlib $oldobjs' ;; RCC*) # Rational C++ 2.4.1 # FIXME: insert proper C++ library support _LT_AC_TAGVAR(ld_shlibs, $1)=no ;; cxx*) _LT_AC_TAGVAR(allow_undefined_flag, $1)=' ${wl}-expect_unresolved ${wl}\*' _LT_AC_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $soname `test -n "$verstring" && echo ${wl}-set_version $verstring` -update_registry ${output_objdir}/so_locations -o $lib' _LT_AC_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir' _LT_AC_TAGVAR(hardcode_libdir_separator, $1)=: # Commands to make compiler produce verbose output that lists # what "hidden" libraries, object files and flags are used when # linking a shared library. # # There doesn't appear to be a way to prevent this compiler from # explicitly linking system object files so we need to strip them # from the output so that they don't get included in the library # dependencies. output_verbose_link_cmd='templist=`$CC -shared $CFLAGS -v conftest.$objext 2>&1 | grep "ld" | grep -v "ld:"`; templist=`echo $templist | $SED "s/\(^.*ld.*\)\( .*ld.*$\)/\1/"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; echo $list' ;; *) if test "$GXX" = yes && test "$with_gnu_ld" = no; then _LT_AC_TAGVAR(allow_undefined_flag, $1)=' ${wl}-expect_unresolved ${wl}\*' _LT_AC_TAGVAR(archive_cmds, $1)='$CC -shared -nostdlib ${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && echo ${wl}-set_version ${wl}$verstring` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib' _LT_AC_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir' _LT_AC_TAGVAR(hardcode_libdir_separator, $1)=: # Commands to make compiler produce verbose output that lists # what "hidden" libraries, object files and flags are used when # linking a shared library. output_verbose_link_cmd='$CC -shared $CFLAGS -v conftest.$objext 2>&1 | grep "\-L"' else # FIXME: insert proper C++ library support _LT_AC_TAGVAR(ld_shlibs, $1)=no fi ;; esac ;; osf4* | osf5*) case $cc_basename in KCC*) # Kuck and Associates, Inc. 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do # Transform symcode, sympat, and symprfx into a raw symbol and a C symbol. symxfrm="\\1 $ac_symprfx\\2 \\2" # Write the raw and C identifiers. lt_cv_sys_global_symbol_pipe="sed -n -e 's/^.*[[ ]]\($symcode$symcode*\)[[ ]][[ ]]*$ac_symprfx$sympat$opt_cr$/$symxfrm/p'" # Check to see that the pipe works correctly. pipe_works=no rm -f conftest* cat > conftest.$ac_ext < $nlist) && test -s "$nlist"; then # Try sorting and uniquifying the output. if sort "$nlist" | uniq > "$nlist"T; then mv -f "$nlist"T "$nlist" else rm -f "$nlist"T fi # Make sure that we snagged all the symbols we need. if grep ' nm_test_var$' "$nlist" >/dev/null; then if grep ' nm_test_func$' "$nlist" >/dev/null; then cat < conftest.$ac_ext #ifdef __cplusplus extern "C" { #endif EOF # Now generate the symbol file. eval "$lt_cv_sys_global_symbol_to_cdecl"' < "$nlist" | grep -v main >> conftest.$ac_ext' cat <> conftest.$ac_ext #if defined (__STDC__) && __STDC__ # define lt_ptr_t void * #else # define lt_ptr_t char * # define const #endif /* The mapping between symbol names and symbols. */ const struct { const char *name; lt_ptr_t address; } lt_preloaded_symbols[[]] = { EOF $SED "s/^$symcode$symcode* \(.*\) \(.*\)$/ {\"\2\", (lt_ptr_t) \&\2},/" < "$nlist" | grep -v main >> conftest.$ac_ext cat <<\EOF >> conftest.$ac_ext {0, (lt_ptr_t) 0} }; #ifdef __cplusplus } #endif EOF # Now try linking the two files. mv conftest.$ac_objext conftstm.$ac_objext lt_save_LIBS="$LIBS" lt_save_CFLAGS="$CFLAGS" LIBS="conftstm.$ac_objext" CFLAGS="$CFLAGS$_LT_AC_TAGVAR(lt_prog_compiler_no_builtin_flag, $1)" if AC_TRY_EVAL(ac_link) && test -s conftest${ac_exeext}; then pipe_works=yes fi LIBS="$lt_save_LIBS" CFLAGS="$lt_save_CFLAGS" else echo "cannot find nm_test_func in $nlist" >&AS_MESSAGE_LOG_FD fi else echo "cannot find nm_test_var in $nlist" >&AS_MESSAGE_LOG_FD fi else echo "cannot run $lt_cv_sys_global_symbol_pipe" >&AS_MESSAGE_LOG_FD fi else echo "$progname: failed program was:" >&AS_MESSAGE_LOG_FD cat conftest.$ac_ext >&5 fi rm -f conftest* conftst* # Do not use the global_symbol_pipe unless it works. if test "$pipe_works" = yes; then break else lt_cv_sys_global_symbol_pipe= fi done ]) if test -z "$lt_cv_sys_global_symbol_pipe"; then lt_cv_sys_global_symbol_to_cdecl= fi if test -z "$lt_cv_sys_global_symbol_pipe$lt_cv_sys_global_symbol_to_cdecl"; then AC_MSG_RESULT(failed) else AC_MSG_RESULT(ok) fi ]) # AC_LIBTOOL_SYS_GLOBAL_SYMBOL_PIPE # AC_LIBTOOL_PROG_COMPILER_PIC([TAGNAME]) # --------------------------------------- AC_DEFUN([AC_LIBTOOL_PROG_COMPILER_PIC], [_LT_AC_TAGVAR(lt_prog_compiler_wl, $1)= _LT_AC_TAGVAR(lt_prog_compiler_pic, $1)= _LT_AC_TAGVAR(lt_prog_compiler_static, $1)= AC_MSG_CHECKING([for $compiler option to produce PIC]) ifelse([$1],[CXX],[ # C++ specific cases for pic, static, wl, etc. if test "$GXX" = yes; then _LT_AC_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_AC_TAGVAR(lt_prog_compiler_static, $1)='-static' case $host_os in aix*) # All AIX code is PIC. if test "$host_cpu" = ia64; then # AIX 5 now supports IA64 processor _LT_AC_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' fi ;; amigaos*) # FIXME: we need at least 68020 code to build shared libraries, but # adding the `-m68020' flag to GCC prevents building anything better, # like `-m68040'. _LT_AC_TAGVAR(lt_prog_compiler_pic, $1)='-m68020 -resident32 -malways-restore-a4' ;; beos* | cygwin* | irix5* | irix6* | nonstopux* | osf3* | osf4* | osf5*) # PIC is the default for these OSes. ;; mingw* | os2* | pw32*) # This hack is so that the source file can tell whether it is being # built for inclusion in a dll (and should export symbols for example). _LT_AC_TAGVAR(lt_prog_compiler_pic, $1)='-DDLL_EXPORT' ;; darwin* | rhapsody*) # PIC is the default on this platform # Common symbols not allowed in MH_DYLIB files _LT_AC_TAGVAR(lt_prog_compiler_pic, $1)='-fno-common' ;; *djgpp*) # DJGPP does not support shared libraries at all _LT_AC_TAGVAR(lt_prog_compiler_pic, $1)= ;; interix3*) # Interix 3.x gcc -fpic/-fPIC options generate broken code. # Instead, we relocate shared libraries at runtime. ;; sysv4*MP*) if test -d /usr/nec; then _LT_AC_TAGVAR(lt_prog_compiler_pic, $1)=-Kconform_pic fi ;; hpux*) # PIC is the default for IA64 HP-UX and 64-bit HP-UX, but # not for PA HP-UX. case $host_cpu in hppa*64*|ia64*) ;; *) _LT_AC_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' ;; esac ;; *) _LT_AC_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' ;; esac else case $host_os in aix4* | aix5*) # All AIX code is PIC. if test "$host_cpu" = ia64; then # AIX 5 now supports IA64 processor _LT_AC_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' else _LT_AC_TAGVAR(lt_prog_compiler_static, $1)='-bnso -bI:/lib/syscalls.exp' fi ;; chorus*) case $cc_basename in cxch68*) # Green Hills C++ Compiler # _LT_AC_TAGVAR(lt_prog_compiler_static, $1)="--no_auto_instantiation -u __main -u __premain -u _abort -r $COOL_DIR/lib/libOrb.a $MVME_DIR/lib/CC/libC.a $MVME_DIR/lib/classix/libcx.s.a" ;; esac ;; darwin*) # PIC is the default on this platform # Common symbols not allowed in MH_DYLIB files case $cc_basename in xlc*) _LT_AC_TAGVAR(lt_prog_compiler_pic, $1)='-qnocommon' _LT_AC_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' ;; esac ;; dgux*) case $cc_basename in ec++*) _LT_AC_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' ;; ghcx*) # Green Hills C++ Compiler _LT_AC_TAGVAR(lt_prog_compiler_pic, $1)='-pic' ;; *) ;; esac ;; freebsd* | kfreebsd*-gnu | dragonfly*) # FreeBSD uses GNU C++ ;; hpux9* | hpux10* | hpux11*) case $cc_basename in CC*) _LT_AC_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_AC_TAGVAR(lt_prog_compiler_static, $1)='${wl}-a ${wl}archive' if test "$host_cpu" != ia64; then _LT_AC_TAGVAR(lt_prog_compiler_pic, $1)='+Z' fi ;; aCC*) _LT_AC_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_AC_TAGVAR(lt_prog_compiler_static, $1)='${wl}-a ${wl}archive' case $host_cpu in hppa*64*|ia64*) # +Z the default ;; *) _LT_AC_TAGVAR(lt_prog_compiler_pic, $1)='+Z' ;; esac ;; *) ;; esac ;; interix*) # This is c89, which is MS Visual C++ (no shared libs) # Anyone wants to do a port? ;; irix5* | irix6* | nonstopux*) case $cc_basename in CC*) _LT_AC_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_AC_TAGVAR(lt_prog_compiler_static, $1)='-non_shared' # CC pic flag -KPIC is the default. ;; *) ;; esac ;; linux*) case $cc_basename in KCC*) # KAI C++ Compiler _LT_AC_TAGVAR(lt_prog_compiler_wl, $1)='--backend -Wl,' _LT_AC_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' ;; icpc* | ecpc*) # Intel C++ _LT_AC_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_AC_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_AC_TAGVAR(lt_prog_compiler_static, $1)='-static' ;; pgCC*) # Portland Group C++ compiler. _LT_AC_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_AC_TAGVAR(lt_prog_compiler_pic, $1)='-fpic' _LT_AC_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; cxx*) # Compaq C++ # Make sure the PIC flag is empty. 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The following line is correct: shared_flag='-G' else if test "$aix_use_runtimelinking" = yes; then shared_flag='${wl}-G' else shared_flag='${wl}-bM:SRE' fi fi fi # It seems that -bexpall does not export symbols beginning with # underscore (_), so it is better to generate a list of symbols to export. _LT_AC_TAGVAR(always_export_symbols, $1)=yes if test "$aix_use_runtimelinking" = yes; then # Warning - without using the other runtime loading flags (-brtl), # -berok will link without error, but may produce a broken library. _LT_AC_TAGVAR(allow_undefined_flag, $1)='-berok' # Determine the default libpath from the value encoded in an empty executable. _LT_AC_SYS_LIBPATH_AIX _LT_AC_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-blibpath:$libdir:'"$aix_libpath" _LT_AC_TAGVAR(archive_expsym_cmds, $1)="\$CC"' -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags `if test "x${allow_undefined_flag}" != "x"; then echo "${wl}${allow_undefined_flag}"; else :; fi` '"\${wl}$exp_sym_flag:\$export_symbols $shared_flag" else if test "$host_cpu" = ia64; then _LT_AC_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-R $libdir:/usr/lib:/lib' _LT_AC_TAGVAR(allow_undefined_flag, $1)="-z nodefs" _LT_AC_TAGVAR(archive_expsym_cmds, $1)="\$CC $shared_flag"' -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags ${wl}${allow_undefined_flag} '"\${wl}$exp_sym_flag:\$export_symbols" else # Determine the default libpath from the value encoded in an empty executable. _LT_AC_SYS_LIBPATH_AIX _LT_AC_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-blibpath:$libdir:'"$aix_libpath" # Warning - without using the other run time loading flags, # -berok will link without error, but may produce a broken library. _LT_AC_TAGVAR(no_undefined_flag, $1)=' ${wl}-bernotok' _LT_AC_TAGVAR(allow_undefined_flag, $1)=' ${wl}-berok' # Exported symbols can be pulled into shared objects from archives _LT_AC_TAGVAR(whole_archive_flag_spec, $1)='$convenience' _LT_AC_TAGVAR(archive_cmds_need_lc, $1)=yes # This is similar to how AIX traditionally builds its shared libraries. _LT_AC_TAGVAR(archive_expsym_cmds, $1)="\$CC $shared_flag"' -o $output_objdir/$soname $libobjs $deplibs ${wl}-bnoentry $compiler_flags ${wl}-bE:$export_symbols${allow_undefined_flag}~$AR $AR_FLAGS $output_objdir/$libname$release.a $output_objdir/$soname' fi fi ;; amigaos*) _LT_AC_TAGVAR(archive_cmds, $1)='$rm $output_objdir/a2ixlibrary.data~$echo "#define NAME $libname" > $output_objdir/a2ixlibrary.data~$echo "#define LIBRARY_ID 1" >> $output_objdir/a2ixlibrary.data~$echo "#define VERSION $major" >> $output_objdir/a2ixlibrary.data~$echo "#define REVISION $revision" >> $output_objdir/a2ixlibrary.data~$AR $AR_FLAGS $lib $libobjs~$RANLIB $lib~(cd $output_objdir && a2ixlibrary -32)' _LT_AC_TAGVAR(hardcode_libdir_flag_spec, $1)='-L$libdir' _LT_AC_TAGVAR(hardcode_minus_L, $1)=yes # see comment about different semantics on the GNU ld section _LT_AC_TAGVAR(ld_shlibs, $1)=no ;; bsdi[[45]]*) _LT_AC_TAGVAR(export_dynamic_flag_spec, $1)=-rdynamic ;; cygwin* | mingw* | pw32*) # When not using gcc, we currently assume that we are using # Microsoft Visual C++. # hardcode_libdir_flag_spec is actually meaningless, as there is # no search path for DLLs. _LT_AC_TAGVAR(hardcode_libdir_flag_spec, $1)=' ' _LT_AC_TAGVAR(allow_undefined_flag, $1)=unsupported # Tell ltmain to make .lib files, not .a files. libext=lib # Tell ltmain to make .dll files, not .so files. shrext_cmds=".dll" # FIXME: Setting linknames here is a bad hack. _LT_AC_TAGVAR(archive_cmds, $1)='$CC -o $lib $libobjs $compiler_flags `echo "$deplibs" | $SED -e '\''s/ -lc$//'\''` -link -dll~linknames=' # The linker will automatically build a .lib file if we build a DLL. _LT_AC_TAGVAR(old_archive_From_new_cmds, $1)='true' # FIXME: Should let the user specify the lib program. _LT_AC_TAGVAR(old_archive_cmds, $1)='lib /OUT:$oldlib$oldobjs$old_deplibs' _LT_AC_TAGVAR(fix_srcfile_path, $1)='`cygpath -w "$srcfile"`' _LT_AC_TAGVAR(enable_shared_with_static_runtimes, $1)=yes ;; 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*) _LT_AC_TAGVAR(ld_shlibs, $1)=no ;; esac fi ;; dgux*) _LT_AC_TAGVAR(archive_cmds, $1)='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' _LT_AC_TAGVAR(hardcode_libdir_flag_spec, $1)='-L$libdir' _LT_AC_TAGVAR(hardcode_shlibpath_var, $1)=no ;; freebsd1*) _LT_AC_TAGVAR(ld_shlibs, $1)=no ;; # FreeBSD 2.2.[012] allows us to include c++rt0.o to get C++ constructor # support. Future versions do this automatically, but an explicit c++rt0.o # does not break anything, and helps significantly (at the cost of a little # extra space). freebsd2.2*) _LT_AC_TAGVAR(archive_cmds, $1)='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags /usr/lib/c++rt0.o' _LT_AC_TAGVAR(hardcode_libdir_flag_spec, $1)='-R$libdir' _LT_AC_TAGVAR(hardcode_direct, $1)=yes _LT_AC_TAGVAR(hardcode_shlibpath_var, $1)=no ;; # Unfortunately, older versions of FreeBSD 2 do not have this feature. freebsd2*) _LT_AC_TAGVAR(archive_cmds, $1)='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' _LT_AC_TAGVAR(hardcode_direct, $1)=yes _LT_AC_TAGVAR(hardcode_minus_L, $1)=yes _LT_AC_TAGVAR(hardcode_shlibpath_var, $1)=no ;; # FreeBSD 3 and greater uses gcc -shared to do shared libraries. freebsd* | kfreebsd*-gnu | dragonfly*) _LT_AC_TAGVAR(archive_cmds, $1)='$CC -shared -o $lib $libobjs $deplibs $compiler_flags' _LT_AC_TAGVAR(hardcode_libdir_flag_spec, $1)='-R$libdir' _LT_AC_TAGVAR(hardcode_direct, $1)=yes _LT_AC_TAGVAR(hardcode_shlibpath_var, $1)=no ;; hpux9*) if test "$GCC" = yes; then _LT_AC_TAGVAR(archive_cmds, $1)='$rm $output_objdir/$soname~$CC -shared -fPIC ${wl}+b ${wl}$install_libdir -o $output_objdir/$soname $libobjs $deplibs $compiler_flags~test $output_objdir/$soname = $lib || mv $output_objdir/$soname $lib' else _LT_AC_TAGVAR(archive_cmds, $1)='$rm $output_objdir/$soname~$LD -b +b $install_libdir -o $output_objdir/$soname $libobjs $deplibs $linker_flags~test $output_objdir/$soname = $lib || mv $output_objdir/$soname $lib' fi _LT_AC_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}+b ${wl}$libdir' _LT_AC_TAGVAR(hardcode_libdir_separator, $1)=: _LT_AC_TAGVAR(hardcode_direct, $1)=yes # hardcode_minus_L: Not really in the search PATH, # but as the default location of the library. _LT_AC_TAGVAR(hardcode_minus_L, $1)=yes _LT_AC_TAGVAR(export_dynamic_flag_spec, $1)='${wl}-E' ;; hpux10*) if test "$GCC" = yes -a "$with_gnu_ld" = no; then _LT_AC_TAGVAR(archive_cmds, $1)='$CC -shared -fPIC ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags' else _LT_AC_TAGVAR(archive_cmds, $1)='$LD -b +h $soname +b $install_libdir -o $lib $libobjs $deplibs $linker_flags' fi if test "$with_gnu_ld" = no; then _LT_AC_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}+b ${wl}$libdir' _LT_AC_TAGVAR(hardcode_libdir_separator, $1)=: _LT_AC_TAGVAR(hardcode_direct, $1)=yes _LT_AC_TAGVAR(export_dynamic_flag_spec, $1)='${wl}-E' # hardcode_minus_L: Not really in the search PATH, # but as the default location of the library. _LT_AC_TAGVAR(hardcode_minus_L, $1)=yes fi ;; hpux11*) if test "$GCC" = yes -a "$with_gnu_ld" = no; then case $host_cpu in hppa*64*) _LT_AC_TAGVAR(archive_cmds, $1)='$CC -shared ${wl}+h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags' ;; ia64*) _LT_AC_TAGVAR(archive_cmds, $1)='$CC -shared ${wl}+h ${wl}$soname ${wl}+nodefaultrpath -o $lib $libobjs $deplibs $compiler_flags' ;; *) _LT_AC_TAGVAR(archive_cmds, $1)='$CC -shared -fPIC ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags' ;; esac else case $host_cpu in hppa*64*) _LT_AC_TAGVAR(archive_cmds, $1)='$CC -b ${wl}+h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags' ;; ia64*) _LT_AC_TAGVAR(archive_cmds, $1)='$CC -b ${wl}+h ${wl}$soname ${wl}+nodefaultrpath -o $lib $libobjs $deplibs $compiler_flags' ;; *) _LT_AC_TAGVAR(archive_cmds, $1)='$CC -b ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags' ;; esac fi if test "$with_gnu_ld" = no; then _LT_AC_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}+b ${wl}$libdir' _LT_AC_TAGVAR(hardcode_libdir_separator, $1)=: case $host_cpu in hppa*64*|ia64*) _LT_AC_TAGVAR(hardcode_libdir_flag_spec_ld, $1)='+b $libdir' _LT_AC_TAGVAR(hardcode_direct, $1)=no _LT_AC_TAGVAR(hardcode_shlibpath_var, $1)=no ;; *) _LT_AC_TAGVAR(hardcode_direct, $1)=yes _LT_AC_TAGVAR(export_dynamic_flag_spec, $1)='${wl}-E' # hardcode_minus_L: Not really in the search PATH, # but as the default location of the library. _LT_AC_TAGVAR(hardcode_minus_L, $1)=yes ;; esac fi ;; irix5* | irix6* | nonstopux*) if test "$GCC" = yes; then _LT_AC_TAGVAR(archive_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && echo ${wl}-set_version ${wl}$verstring` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib' else _LT_AC_TAGVAR(archive_cmds, $1)='$LD -shared $libobjs $deplibs $linker_flags -soname $soname `test -n "$verstring" && echo -set_version $verstring` -update_registry ${output_objdir}/so_locations -o $lib' _LT_AC_TAGVAR(hardcode_libdir_flag_spec_ld, $1)='-rpath $libdir' fi _LT_AC_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir' _LT_AC_TAGVAR(hardcode_libdir_separator, $1)=: _LT_AC_TAGVAR(link_all_deplibs, $1)=yes ;; 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*) _LT_AC_TAGVAR(archive_cmds, $1)='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags' _LT_AC_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath,$libdir' ;; esac fi ;; os2*) _LT_AC_TAGVAR(hardcode_libdir_flag_spec, $1)='-L$libdir' _LT_AC_TAGVAR(hardcode_minus_L, $1)=yes _LT_AC_TAGVAR(allow_undefined_flag, $1)=unsupported _LT_AC_TAGVAR(archive_cmds, $1)='$echo "LIBRARY $libname INITINSTANCE" > $output_objdir/$libname.def~$echo "DESCRIPTION \"$libname\"" >> $output_objdir/$libname.def~$echo DATA >> $output_objdir/$libname.def~$echo " SINGLE NONSHARED" >> $output_objdir/$libname.def~$echo EXPORTS >> $output_objdir/$libname.def~emxexp $libobjs >> $output_objdir/$libname.def~$CC -Zdll -Zcrtdll -o $lib $libobjs $deplibs $compiler_flags $output_objdir/$libname.def' _LT_AC_TAGVAR(old_archive_From_new_cmds, $1)='emximp -o $output_objdir/$libname.a $output_objdir/$libname.def' ;; osf3*) if test "$GCC" = yes; then _LT_AC_TAGVAR(allow_undefined_flag, $1)=' ${wl}-expect_unresolved ${wl}\*' _LT_AC_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && echo ${wl}-set_version ${wl}$verstring` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib' else _LT_AC_TAGVAR(allow_undefined_flag, $1)=' -expect_unresolved \*' _LT_AC_TAGVAR(archive_cmds, $1)='$LD -shared${allow_undefined_flag} $libobjs $deplibs $linker_flags -soname $soname `test -n "$verstring" && echo -set_version $verstring` -update_registry ${output_objdir}/so_locations -o $lib' fi _LT_AC_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir' _LT_AC_TAGVAR(hardcode_libdir_separator, $1)=: ;; 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May only contain columns with scalar row entries and a small range of data types. AsciiTable (re)implements functions prescribed in the Table abstract class. The implementations allow the calling of cfitsio specialized routines for AsciiTable header construction. Direct instantiation of AsciiTable objects is disallowed: they are created by explicit calls to FITS::addTable( ... ), FITS::read(...) or internally by one of the FITS ctors on initialization. The default for FITS::addTable is to produce BinTable extensions. */ /*! \fn AsciiTable::~AsciiTable(); \brief destructor. */ /*! \fn virtual void AsciiTable::readData (bool readFlag, const std::vector& keys); \brief read columns and keys specified in the input array. See Table class documentation for further details. */ /*! \fn virtual void AsciiTable::addColumn (ValueType type, const String& columnName, long repeatWidth, const String& colUnit = String(""), long decimals = 0, size_t columnNumber = 0); \brief add a new column to an existing table HDU. \param type The data type of the column to be added \param columnName The name of the column to be added \param repeatWidth for a string valued, this is the width of a string. For a numeric column it supplies the vector length of the rows. It is ignored for ascii table numeric data. \param colUnit an optional field specifying the units of the data (TUNITn) \param decimals optional parameter specifying the number of decimals for an ascii numeric column \param columnNumber optional parameter specifying column number to be created. If not specified the column is added to the end. If specified, the column is inserted and the columns already read are reindexed. This parameter is provided as a convenience to support existing code rather than recommended. */ /*! \fn AsciiTable::AsciiTable (FITSBase * p, const String &hduName, bool readFlag, const std::vector& keys, int version); \brief reading constructor: Construct a AsciiTable extension from an extension of an existing disk file. The Table is specified by name and optional version number within the file. An array of strings representing columns or keys indicates which data are to be read. The column data are only read if readFlag is true. Reading on construction is optimized, so it is more efficient to read data at the point of instantiation. This favours a "resource acquisition is initialization" model of data management. \param p pointer to FITSBase object for internal use \param hduName name of AsciiTable object to be read. \param readFlag flag to determine whether to read data on construction \param keys (optional) a list of keywords/columns to be read. The implementation will determine which are keywords. If none are specified, the constructor will simply read the header \param version (optional) version number. If not specified, will read the first extension that matches hduName. */ /*! \fn AsciiTable::AsciiTable (FITSBase* p, const String &hduName, int rows, const std::vector& columnName = std::vector(), const std::vector& columnFmt = std::vector(), const std::vector& columnUnit = std::vector(), int version = 1); \brief writing constructor: create new Ascii Table object with the specified columns The constructor creates a valid HDU which is ready for Column::write or insertRows operations. The disk FITS file is update accordingly. The data type of each column is determined by the columnFmt argument (TFORM keywords). See cfitsio documentation for acceptable values. \param hduName name of AsciiTable object to be written \param rows number of rows in the table (NAXIS2) \param columnName array of column names for columns to be constructed. \param columnFmt array of column formats for columns to be constructed. \param columnUnit (optional) array of units for data in columns. \param version (optional) version number for HDU. The dimensions of columnType, columnName and columnFmt must match, although this is not enforced at present. \todo{enforce equal dimensions for arrays input to AsciiTable, BinTable writing ctor} */ /*! \fn AsciiTable::AsciiTable (FITSBase* p, int number); \brief read AsciiTable with HDU number \p number from existing file. This is used internally by methods that need to access HDUs for which no EXTNAME [or equivalent] keyword exists. */ /*! \fn virtual void AsciiTable::readTableHeader (int ncols, std::vector& colName, std::vector& colFmt, std::vector& colUnit); \brief read the table header. constructor internal call. */ class AsciiTable : public Table //## Inherits: %3804A75CE420 { public: virtual AsciiTable * clone (FITSBase* p) const; virtual void readData (bool readFlag = false, const std::vector& keys = std::vector()); virtual void addColumn (ValueType type, const String& columnName, long repeatWidth, const String& colUnit = String(""), long decimals = 0, size_t columnNumber = 0); // Additional Public Declarations protected: AsciiTable (FITSBase* p, const String &hduName = String(""), bool readFlag = false, const std::vector& keys = std::vector(), int version = 1); AsciiTable (FITSBase* p, const String &hduName, int rows, const std::vector& columnName = std::vector(), const std::vector& columnFmt = std::vector(), const std::vector& columnUnit = std::vector(), int version = 1); // ExtHDU constructor for getting ExtHDUs by number. // Necessary since EXTNAME is a reserved not required // keyword. AsciiTable (FITSBase* p, int number); ~AsciiTable(); // Additional Protected Declarations private: AsciiTable(const AsciiTable &right); virtual void readTableHeader (int ncols, std::vector& colName, std::vector& colFmt, std::vector& colUnit); // Additional Private Declarations private: //## implementation // Additional Implementation Declarations friend class HDUCreator; }; // Class CCfits::AsciiTable } // namespace CCfits #endif CCfits/BinTable.h0000644000225700000360000001524611470265344013366 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef BINTABLE_H #define BINTABLE_H 1 // HDUCreator #include "HDUCreator.h" // Table #include "Table.h" // needed for CLONE_DEFECT #ifdef _MSC_VER #include "MSconfig.h" #endif namespace CCfits { /*! \class BinTable \brief Class Representing Binary Table Extensions. Contains columns with scalar or vector row entries BinTable (re)implements functions prescribed in the Table abstract class. The implementations allow the calling of cfitsio specialized routines for BinTable header construction. functions particular to the BinTable class include those dealing with variable width columns Direct instantiation of BinTable objects is disallowed: they are created by explicit calls to FITS::addTable( ... ), FITS::read(...) or internally by one of the FITS ctors on initialization. For addTable, creation of BinTables is the default. */ /*! \fn BinTable::~BinTable(); \brief destructor. */ /*! \fn virtual void BinTable::readData (bool readFlag = false, const std::vector& keys = std::vector()); \brief read columns and keys specified in the input array. See Table class documentation for further details. */ /*! \fn virtual void BinTable::addColumn (ValueType type, const String& columnName, long repeatWidth, const String& colUnit = String(""), long decimals = 0, size_t columnNumber = 0); \brief add a new column to an existing table HDU. \param type The data type of the column to be added \param columnName The name of the column to be added \param repeatWidth for a string valued, this is the width of a string. For a numeric column it supplies the vector length of the rows. It is ignored for ascii table numeric data. \param colUnit an optional field specifying the units of the data (TUNITn) \param decimals optional parameter specifying the number of decimals for an ascii numeric column \param columnNumber optional parameter specifying column number to be created. If not specified the column is added to the end. If specified, the column is inserted and the columns already read are reindexed. This parameter is provided as a convenience to support existing code rather than recommended. */ /*! \fn BinTable::BinTable (FITSBase* p, const String &hduName, bool readFlag, const std::vector& keys, int version); \brief reading constructor. Construct a BinTable extension from an extension of an existing disk file. The Table is specified by name and optional version number within the file. An array of strings representing columns or keys indicates which data are to be read. The column data are only read if readFlag is true. Reading on construction is optimized, so it is more efficient to read data at the point of instantiation. This favours a "resource acquisition is initialization" model of data management. \param p Pointer to FITSBase class, an internal implementation detail \param hduName name of BinTable object to be read. \param readFlag flag to determine whether to read data on construction \param keys (optional) a list of keywords/columns to be read. The implementation will determine which are keywords. If none are specified, the constructor will simply read the header \param version (optional) version number. If not specified, will read the first extension that matches hduName. */ /*! \fn BinTable::BinTable (FITSBase* p, const String &hduName, int rows, const std::vector& columnName, const std::vector& columnFmt, const std::vector& columnUnit, int version); \brief writing constructor The constructor creates a valid HDU which is ready for Column::write or insertRows operations. The disk FITS file is update accordingly. The data type of each column is determined by the columnFmt argument (TFORM keywords). See cfitsio documentation for acceptable values. \param p Pointer to FITSBase class, an internal implementation detail \param hduName name of BinTable object to be written \param rows number of rows in the table (NAXIS2) \param columnName array of column names for columns to be constructed. \param columnFmt array of column formats for columns to be constructed. \param columnUnit (optional) array of units for data in columns. \param version (optional) version number for HDU. The dimensions of columnType, columnName and columnFmt must match, but this is not enforced. */ /*! \fn BinTable::BinTable (FITSBase* p, int number); \brief read BinTable with HDU number \p number from existing file represented by fitsfile pointer p. */ class BinTable : public Table //## Inherits: %3804A7E75F10 { public: virtual BinTable * clone (FITSBase* p) const; virtual void readData (bool readFlag = false, const std::vector& keys = std::vector()); virtual void addColumn (ValueType type, const String& columnName, long repeatWidth, const String& colUnit = String(""), long decimals = 0, size_t columnNumber = 0); // Additional Public Declarations protected: BinTable (FITSBase* p, const String &hduName = String(""), bool readFlag = false, const std::vector& keys = std::vector(), int version = 1); BinTable (FITSBase* p, const String &hduName, int rows, const std::vector& columnName = std::vector(), const std::vector& columnFmt = std::vector(), const std::vector& columnUnit = std::vector(), int version = 1); // ExtHDU constructor for getting ExtHDUs by number. // Necessary since EXTNAME is a reserved not required // keyword. BinTable (FITSBase* p, int number); ~BinTable(); // Additional Protected Declarations private: BinTable(const BinTable &right); virtual void readTableHeader (int ncols, std::vector& colName, std::vector& colFmt, std::vector& colUnit); void readVariableColumns (const std::vector &varColumns); // Additional Private Declarations private: //## implementation // Additional Implementation Declarations friend class HDUCreator; }; // Class CCfits::BinTable } // namespace CCfits #endif CCfits/CCfits0000644000225700000360000000065707765174427012650 0ustar cagordonlhea #ifndef CCFITS #define CCFITS 20031208 #include #include #include #include #include #include #include #include #include #include #include #include #include #endif CCfits/CCfits.h0000644000225700000360000000513311470306662013052 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef CCFITS_H #define CCFITS_H 1 // fitsio #include "fitsio.h" // string #include namespace CCfits { class ExtHDU; } // namespace CCfits #include #include #include "longnam.h" #include "float.h" namespace CCfits { /*! \namespace CCfits * \brief Namespace enclosing all CCfits classes and globals definitions. */ static const int BITPIX = -32; static const int NAXIS = 2; static const int MAXDIM = 99; extern const unsigned long USBASE; extern const unsigned long ULBASE; extern char BSCALE[7]; extern char BZERO[6]; typedef enum {Read=READONLY,Write=READWRITE} RWmode; /*! \enum ValueType * \brief CCfits value types and their CFITSIO equivalents (in caps) * Tnull, * Tbit = TBIT, * Tbyte = TBYTE, * Tlogical = TLOGICAL, * Tstring = TSTRING, * Tushort = TUSHORT, * Tshort = TSHORT, * Tuint = TUINT, * Tint = TINT, * Tulong = TULONG, * Tlong = TLONG, * Tlonglong = TLONGLONG, * Tfloat = TFLOAT, * Tdouble = TDOUBLE, * Tcomplex = TCOMPLEX, * Tdblcomplex=TDBLCOMPLEX, * VTbit= -TBIT, * VTbyte=-TBYTE, * VTlogical=-Tlogical, * VTushort=-TUSHORT, * VTshort=-TSHORT, * VTuint=-TUINT, * VTint=-TINT, * VTulong=-TULONG, * VTlong=-TLONG, * VTlonglong=-TLONGLONG, * VTfloat=-TFLOAT, * VTdouble=-TDOUBLE, * VTcomplex=-TCOMPLEX, * VTdblcomplex=-TDBLCOMPLEX */ typedef enum {Tnull, Tbit = TBIT, Tbyte = TBYTE, Tlogical = TLOGICAL, Tstring = TSTRING, Tushort = TUSHORT, Tshort = TSHORT,Tuint = TUINT,Tint = TINT, Tulong = TULONG,Tlong = TLONG, Tlonglong = TLONGLONG, Tfloat = TFLOAT, Tdouble = TDOUBLE, Tcomplex = TCOMPLEX, Tdblcomplex=TDBLCOMPLEX, VTbit= -TBIT, VTbyte=-TBYTE,VTlogical=-Tlogical, VTushort=-TUSHORT,VTshort=-TSHORT,VTuint=-TUINT, VTint=-TINT,VTulong=-TULONG,VTlong=-TLONG,VTlonglong=-TLONGLONG,VTfloat=-TFLOAT,VTdouble=-TDOUBLE,VTcomplex=-TCOMPLEX,VTdblcomplex=-TDBLCOMPLEX} ValueType; typedef enum {AnyHdu=-1, ImageHdu, AsciiTbl, BinaryTbl} HduType; typedef enum {Inotype = 0, Ibyte=BYTE_IMG, Ishort = SHORT_IMG, Ilong = LONG_IMG, Ifloat = FLOAT_IMG, Idouble = DOUBLE_IMG, Iushort = USHORT_IMG, Iulong = ULONG_IMG} ImageType; typedef std::string String; typedef std::multimap ExtMap; typedef ExtMap::const_iterator ExtMapConstIt; typedef ExtMap::iterator ExtMapIt; } // namespace CCfits #endif CCfits/Column.h0000644000225700000360000013421411470265344013140 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef COLUMN_H #define COLUMN_H 1 #include // CCfitsHeader #include "CCfits.h" // Table #include "Table.h" // FitsError #include "FitsError.h" // FITSUtil #include "FITSUtil.h" #include namespace CCfits { /*! \class Column \brief Abstract base class for Column objects. Columns are the data containers used in FITS tables. Columns of scalar type (one entry per cell) are implemented by the template subclass ColumnData. Columns of vector type (vector and variable rows) are implemented with the template subclass ColumnVectorData. AsciiTables may only contain Columns of type ColumnData, where T is an implemented FITS data type (see the CCfits.h header for a complete list. This requirement is enforced by ensuring that AsciiTable's addColumn method may only create an AsciiTable compatible column. The ColumnData class stores its data in a std::vector object. BinTables may contain either ColumnData or ColumnVectorData. For ColumnVectorData, T must be a numeric type: string vectors are handled by ColumnData; string arrays are not supported. The internal representation of the data is a std::vector > object. The std::valarray class is designed for efficient numeric processing and has many vectorized numeric and transcendental functions defined on it. Member template functions for read/write operations are provided in multiple overloads as the interface to data operations. Implicit data type conversions are supported but where they are required make the operations less efficient. Reading numeric column data as character arrays, supported by cfitsio, is not supported by CCfits. As a base class, Column provides protected accessor/mutator inline functions to allow only its subclasses to access data members. */ /*! \class Column::RangeError @ingroup FITSexcept @brief exception to be thrown for inputs that cause range errors in column read operations. Range errors here mean (last < first) in a request to read a range of rows. */ /*! \fn Column::RangeError::RangeError (const String& msg, bool silent); \brief Exception ctor, prefixes the string "FitsError: Range error in operation " before the specific message. \param msg A specific diagnostic message \param silent if true, print message whether FITS::verboseMode is set or not. */ /*! \class Column::InvalidDataType @ingroup FITSExcept @brief Exception thrown for invalid data type inputs This exception is thrown if the user requests an implicit data type conversion to a datatype that is not one of the supported types (see fitsio.h for details). */ /*! \fn Column::InvalidDataType::InvalidDataType (const String& str, bool silent); \brief Exception ctor, prefixes the string "FitsError: Incorrect data type: " before the specific message. \param str A specific diagnostic message \param silent if true, print message whether FITS::verboseMode is set or not. */ /*! \class Column::InvalidRowParameter @ingroup FITSExcept @brief Exception thrown on incorrect row writing request This exception is thrown if the user requests writing more data than a fixed width row can accommodate. An exception is thrown rather than a truncation because it is likely that the user will not otherwise realize that data loss is happening. */ /*! \fn Column::InvalidRowParameter::InvalidRowParameter (const String& diag, bool silent); \brief Exception ctor, prefixes the string "FitsError: row offset or length incompatible with column declaration " before the specific message. \param diag A specific diagnostic message, usually the column name \param silent if true, print message whether FITS::verboseMode is set or not. */ /*! \class Column::WrongColumnType @ingroup FITSExcept @brief Exception thrown on attempting to access a scalar column as vector data. This exception will be thrown if the user tries to call a read/write operation with a signature appropriate for a vector column on a scalar column, or vice versa. For example in the case of write operations, the vector versions require the specification of (a) a number of rows to write over, (b) a vector of lengths to write to each row or (c) a subset specification. The scalar versions only require a number of rows if the input array is a plain C-array, otherwise the range to be written is the size of the input vector. */ /*! \fn Column::WrongColumnType::WrongColumnType (const String& diag, bool silent); \brief Exception ctor, prefixes the string "FitsError: Attempt to return scalar data from vector column, or vice versa - Column: " before the specific message. \param diag A specific diagnostic message, usually the column name. \param silent if true, print message whether FITS::verboseMode is set or not. */ /*! \class Column::InvalidRowNumber @ingroup FITSExcept @brief Exception thrown on attempting to read a row number beyond the end of a table. */ /*! \fn Column::InvalidRowNumber::InvalidRowNumber (const String& diag, bool silent); \brief Exception ctor, prefixes the string "FitsError: Invalid Row Number - Column: " before the specific message. \param diag A specific diagnostic message, usually the column name. \param silent if true, print message whether FITS::verboseMode is set or not. */ /*! \class Column::InsufficientElements @ingroup FITSExcept @brief Exception thrown if the data supplied for a write operation is less than declared. This circumstance generates an exception to avoid unexpected behaviour after the write operation is completed. It can be avoided by resizing the input array appropriately. */ /*! \fn Column::InsufficientElements::InsufficientElements (const String& msg, bool silent); \brief Exception ctor, prefixes the string "FitsError: not enough elements supplied for write operation: " before the specific message. \param msg A specific diagnostic message, usually the column name \param silent if true, print message whether FITS::verboseMode is set or not. */ /*! \class Column::NoNullValue @ingroup FITSExcept @brief Exception thrown if a null value is specified without support from existing column header. This exception is analogous to the fact that cfitsio returns a non-zero status code if TNULLn doesn't exist an a null value (convert all input data with the null value to the TNULLn keyword) is specified. It is only relevant for integer type data (see cfitsio manual for details). */ /*! \fn Column::NoNullValue::NoNullValue (const String& diag, bool silent); \brief Exception ctor, prefixes the string "Fits Error: No null value specified for column: " before the specific message. \param diag A specific diagnostic message \param silent if true, print message whether FITS::verboseMode is set or not. */ /*! \class Column::InvalidNumberOfRows @ingroup FITSExcept @brief Exception thrown if user enters a non-positive number for the number of rows to write. */ /*! \fn Column::InvalidNumberOfRows::InvalidNumberOfRows (size_t number, bool silent); \brief Exception ctor, prefixes the string "Fits Error: number of rows to write must be positive " before the specific message. \param number The number of rows entered. \param silent if true, print message whether FITS::verboseMode is set or not. */ /*! \fn Column::Column(const Column& right); \brief copy constructor, used in copying Columns to standard library containers. The copy constructor is for internal use only: it does not affect the disk fits file associated with the object. */ /*! \fn virtual Column::~Column(); \brief destructor. */ /*! \fn template void Column::read(std::vector& vals, long first, long last); \brief Retrieve data from a scalar column into a std::vector This and the following functions perform implicit data conversions. An exception will be thrown if no conversion exists. \param vals The output container. The function will resize this as necessary \param first,last the span of row numbers to read. */ /*! \fn template void Column::read(std::vector& vals, long first, long last, S* nullValue) ; \brief Retrieve data from a scalar column into a std::vector>, applying nullValue when relevant. If both nullValue and *nullValue are not 0, then any undefined values in the file will be converted to *nullValue when copied into the vals vector. See cfitsio documentation for further details \param vals The output container. The function will resize this as necessary \param first,last the span of row numbers to read. \param nullValue pointer to value to be applied to undefined elements. */ /*! \fn template void Column::read(std::valarray& vals, long first, long last) ; \brief Retrieve data from a scalar column into a std::valarray \param vals The output container. The function will resize this as necessary \param first,last the span of row numbers to read. */ /*! \fn template void Column::read(std::valarray& vals, long first, long last, S* nullValue) ; \brief Retrieve data from a scalar column into a std::valarray, applying nullValue when relevant. If both nullValue and *nullValue are not 0, then any undefined values in the file will be converted to *nullValue when copied into the vals valarray. See cfitsio documentation for further details \param vals The output container. The function will resize this as necessary \param first,last the span of row numbers to read. \param nullValue pointer to value to be applied to undefined elements. */ /*! \fn template void Column::read(std::valarray& vals, long rows) ; \brief return a single row of a vector column into a std::valarray \param vals The output valarray object \param rows The row number to be retrieved (starting at 1). */ /*! \fn template void Column::read(std::valarray& vals, long rows, S* nullValue) ; \brief return a single row of a vector column into a std::valarray, setting undefined values */ /*! \fn template void Column::readArrays(std::vector >& vals, long first,long last); \brief return a set of rows of a vector column into a vector of valarrays \param vals The output container. The function will resize this as necessary \param first,last the span of row numbers to read. */ /*! \fn template void Column::readArrays(std::vector >& vals, long first, long last, S* nullValue); \brief return a set of rows of a vector column into a container, setting undefined values \param vals The output container. The function will resize this as necessary \param first,last the span of row numbers to read. \param nullValue pointer to integer value regarded as undefined */ /*! \fn template void Column::write(const std::vector& indata, long firstRow); \brief write a vector of values into a scalar column starting with firstRow \param indata The data to be written. \param firstRow The first row to be written */ /*! \fn template void Column::write(const std::valarray& indata, long firstRow); \brief write a valarray of values into a scalar column starting with firstRow \param indata The data to be written. \param firstRow The first row to be written */ /*! \fn template void Column::write(const std::vector& indata, long firstRow, S* nullValue); \brief write a vector of values into a scalar column starting with firstRow, replacing elements equal to *nullValue with the FITS null value. If nullValue is not 0, the appropriate FITS null value will be substituted for all elements of indata equal to *nullValue. For integer type columns there must be a pre-existing TNULLn keyword to define the FITS null value, otherwise a FitsError exception is thrown. For floating point columns, the FITS null is the IEEE NaN (Not-a-Number) value. See the cfitsio fits_write_colnull function documentation for more details. \param indata The data to be written. \param firstRow The first row to be written \param nullValue Pointer to the value for which equivalent indata elements will be replaced in the file with the appropriate FITS null value. */ /*! \fn template void Column::write(const std::valarray& indata, long firstRow, S* nullValue); \brief write a valarray of values into a scalar column starting with firstRow, replacing elements equal to *nullValue with the FITS null value. If nullValue is not 0, the appropriate FITS null value will be substituted for all elements of indata equal to *nullValue. For integer type columns there must be a pre-existing TNULLn keyword to define the FITS null value, otherwise a FitsError exception is thrown. For floating point columns, the FITS null is the IEEE NaN (Not-a-Number) value. See the cfitsio fits_write_colnull function documentation for more details. \param indata The data to be written. \param firstRow The first row to be written \param nullValue Pointer to the value for which equivalent indata elements will be replaced in the file with the appropriate FITS null value. */ /*! \fn template void Column::write(S* indata, long nRows, long firstRow); \brief write a C array of size nRows into a scalar Column starting with row firstRow. \param indata The data to be written. \param nRows The size of the data array to be written \param firstRow The first row to be written */ /*! \fn template void Column::write(S* indata, long nRows, long firstRow, S* nullValue); \brief write a C array into a scalar Column, processing undefined values. \param indata The data to be written. \param nRows The size of the data array to be written \param firstRow The first row to be written \param nullValue Pointer to the value in the input array to be set to undefined values */ /*! \fn template void Column::write (const std::valarray& indata, long nRows, long firstRow); \brief write a valarray of values into a range of rows of a vector column. The primary use of this is for fixed width columns, in which case Column's repeat attribute is used to determine how many elements are written to each row; if indata.size() is too small an exception will be thrown. If the column is variable width, the call will write indata.size()/nRows elements to each row. \param indata The data to be written. \param nRows the number of rows to which to write the data. \param firstRow The first row to be written */ /*! \fn template void Column::write (const std::valarray& indata, long nRows, long firstRow, S* nullValue); \brief write a valarray of values into a range of rows of a vector column. see version without undefined processing for details. */ /*! \fn template void Column::write (const std::vector& indata, long nRows, long firstRow); \brief write a vector of values into a range of rows of a vector column The primary use of this is for fixed width columns, in which case Column's repeat attribute is used to determine how many elements are written to each row; if indata.size() is too small an exception will be thrown. If the column is variable width, the call will write indata.size()/nRows elements to each row. \param indata The data to be written. \param nRows the number of rows to which to write the data. \param firstRow The first row to be written */ /*! \fn template void Column::write (const std::vector& indata, long nRows, long firstRow, S* nullValue); \brief write a vector of values into a range of rows of a vector column, processing undefined values see version without undefined processing for details. */ /*! \fn template void Column::write (S* indata, long nElements, long nRows, long firstRow); \brief write a C array of values into a range of rows of a vector column Details are as for vector input; only difference is the need to supply the size of the C-array. \param indata The data to be written. \param nElements The size of indata \param nRows the number of rows to which to write the data. \param firstRow The first row to be written */ /*! \fn template void Column::write (S* indata, long nElements, long nRows, long firstRow, S* nullValue); \brief write a C array of values into a range of rows of a vector column, processing undefined values. see version without undefined processing for details. */ /*! \fn template void Column::write (const std::valarray& indata, const std::vector& vectorLengths, long firstRow); \brief write a valarray of values into a column with specified number of entries written per row. Data are written into vectorLengths.size() rows, with vectorLength[n] elements written to row n+firstRow -1. Although primarily intended for wrapping calls to multiple variable-width vector column rows, it may also be used to write a variable number of elements to fixed-width column rows. When writing to fixed-width column rows, if the number of elements sent to a particular row are fewer than the column's repeat value, the remaining elements in the row will not be modified. Since cfitsio does not support null value processing for variable width columns this function and its variants do not have version which process undefined values \param indata The data to be written \param vectorLengths the number of elements to write to each successive row. \param firstRow the first row to be written. */ /*! \fn template void Column::write (const std::vector& indata, const std::vector& vectorLengths, long firstRow); \brief write a vector of values into a column with specified number of entries written per row. Intended for writing a varying number of elements to multiple rows in a vector column, this may be used for either variable or fixed-width columns. See the indata valarray version of this function for a complete description. */ /*! \fn template void Column::write (S* indata, long nElements, const std::vector& vectorLengths, long firstRow); \brief write a C-array of values of size nElements into a vector column with specified number of entries written per row. Intended for writing a varying number of elements to multiple rows in a vector column, this may be used for either variable or fixed-width columns. See the indata valarray version of this function for a complete description. */ /*! \fn template void Column::writeArrays (const std::vector >& indata, long firstRow); \brief write a vector of valarray objects to the column, starting at row firstRow >= 1 Intended for writing a varying number of elements to multiple rows in a vector column, this may be used for either variable or fixed-width columns. When writing to fixed-width column rows, if the number of elements sent to a particular row are fewer than the column's repeat value, the remaining elements in the row will not be modified. \param indata The data to be written \param firstRow the first row to be written. */ /*! \fn template void Column::writeArrays (const std::vector >& indata, long firstRow, S* nullValue); \brief write a vector of valarray objects to the column, starting at row firstRow >= 1, processing undefined values see version without undefined processing for details. */ /*! \fn template void Column::addNullValue(T nullVal); \brief Set the TNULLn keyword for the column Only relevant for integer valued columns, TNULLn is the value used by cfitsio in undefined processing. All entries in the table equal to an input "null value" are set equal to the value of TNULLn. (For floating point columns a system NaN value is used). */ /*! \fn template bool Column::getNullValue(T* nullVal) const; \brief Get the value of the TNULLn keyword for the column Only relevant for integer valued columns. If the TNULLn keyword is present, its value will be written to *nullVal and the function returns true. If the keyword is not found or its value is undefined, the function returns false and *nullVal is not modified. \param nullVal A pointer to the variable for storing the TNULLn value. */ /*! \fn virtual void Column::readData (long firstRow = 1, long nelements = 1, long firstElem = 1) = 0; \brief Read (or reread) data from the disk into the Column object's internal arrays. This function normally does not need to be called. See the resetRead function for an alternative way of performing a reread from disk. \param firstRow The first row to be read \param nelements The number of elements to read \param firstElem The number of the element on the first row to start at (ignored for scalar columns) */ /*! \fn void Column::setDisplay (); \brief set the TDISPn keyword */ /*! \fn void Column::rows() const; \brief return the number of rows in the table. */ /*! \fn virtual void Column::setDimen (); \brief set the TDIMn keyword. */ /*! \fn std::ostream& operator <<(std::ostream& s, const Column& right); \brief output operator for Column objects. */ /*! \fn int Column::index () const; \brief get the Column index (the n in TTYPEn etc). */ /*! \fn size_t Column::repeat () const; \brief get the repeat count for the rows */ /*! \fn const bool Column::varLength () const; \brief boolean, set to true if Column has variable length vector rows. */ /*! \fn const double Column::scale () const; \brief get TSCALn value TSCALn is used to convert a data array represented on disk in integer format as floating. Useful for compact storage of digitized data. */ /*! \fn const double Column::zero () const; \brief get TZEROn value TZEROn is an integer offset used in the implementation of unsigned data */ /*! \fn const String& Column::name () const; \brief return name of Column (TTYPEn keyword) */ /*! \fn const String& Column::unit () const; \brief get units of data in Column (TUNITn keyword) */ /*! \fn Column::Column (int columnIndex, const String &columnName,const ValueType type, const String &format, const String &unit, Table* p, int rpt = 1, long w = 1, const String &comment = ""); \brief new column creation constructor This constructor allows the specification of: \param columnIndex The column number \param columnName The column name, keyword TTYPEn \param type used for determining class of T in ColumnData, ColumnVectorData \param format the column data format, TFORMn keyword \param unit the column data unit, TUNITn keyword \param p the Table pointer \param rpt (optional) repeat count for the row ( == 1 for AsciiTables) \param w the row width \param comment comment to be added to the header. */ /*! \fn Column::Column (Table* p = 0); \brief Simple constructor to be called by subclass reading ctors. */ /*! \fn fitsfile* Column::fitsPointer (); \brief fits pointer corresponding to fits file containing column data. */ /*! \fn void Column::makeHDUCurrent (); \brief make HDU containing this the current HDU of the fits file. */ /*! \fn int Column::rows () const; \brief return number of rows in the Column */ /*! \fn virtual std::ostream& Column::put (std::ostream& s) const; \brief internal implementation of << operator. */ /*! \fn const ValueType Column::type () const; \brief returns the data type of the column */ /*! \fn const bool Column::isRead () const; \brief flag set to true if the entire column data has been read from disk */ /*! \fn void Column::resetRead(); \brief reset the Column's isRead flag to false This forces the data to be reread from the disk the next time a read command is called on the Column, rather than simply retrieving the data already stored in the Column object's internal arrays. This may be useful for example if trying to reread a Column using a different nullValue argument than for an earlier read. */ /*! \fn long Column::width () const; \brief return column data width */ /*! \fn String& Column::display () const; \brief return TDISPn keyword TDISPn is suggested format for output of column data. */ /*! \fn String& Column::dimen () const; \brief return TDIMn keyword represents dimensions of data arrays in vector columns. for scalar columns, returns a default value. */ /*! \fn const String& Column::format () const; \brief return TFORMn keyword TFORMn specifies data format stored in disk file. */ /*! \fn const String& Column::comment () const; \brief retrieve comment for Column */ /*! \fn Table* Column::parent() const; \brief return a pointer to the Table which owns this Column */ class Column { public: class RangeError : public FitsException //## Inherits: %3946526D031A { public: RangeError (const String& msg, bool silent = true); protected: private: private: //## implementation }; class InvalidDataType : public FitsException //## Inherits: %3947CF30033E { public: InvalidDataType (const String& str = string(), bool silent = true); protected: private: private: //## implementation }; class InvalidRowParameter : public FitsException //## Inherits: %39B5310F01A0 { public: InvalidRowParameter (const String& diag, bool silent = true); protected: private: private: //## implementation }; class WrongColumnType : public FitsException //## Inherits: %39B545780082 { public: WrongColumnType (const String& diag, bool silent = true); protected: private: private: //## implementation }; class UnspecifiedLengths : public FitsException //## Inherits: %3A018C9D007D { public: UnspecifiedLengths (const String& diag, bool silent = true); protected: private: private: //## implementation }; class InvalidRowNumber : public FitsException //## Inherits: %3B0A850F0307 { public: InvalidRowNumber (const String& diag, bool silent = true); protected: private: private: //## implementation }; class InsufficientElements : public FitsException //## Inherits: %3B0BE611010A { public: InsufficientElements (const String& msg, bool silent = true); protected: private: private: //## implementation }; class NoNullValue : public FitsException //## Inherits: %3B0D589A0092 { public: NoNullValue (const String& diag, bool silent = true); protected: private: private: //## implementation }; class InvalidNumberOfRows : public FitsException //## Inherits: %3B20EB8B0205 { public: InvalidNumberOfRows (size_t number, bool silent = true); protected: private: private: //## implementation }; Column(const Column &right); virtual ~Column(); bool operator==(const Column &right) const; bool operator!=(const Column &right) const; virtual void readData (long firstRow, long nelements, long firstElem = 1) = 0; // Virtual copy constructor. virtual Column * clone () const = 0; int rows () const; void setDisplay (); virtual void setDimen (); friend std::ostream& operator << (std::ostream& s, const Column& right); Table* parent () const; // Inequality operators for imposing sort order on columns. friend bool operator < (const Column& left, const Column& right); // Inequality operators for imposing sort order on columns. friend bool operator > (const Column& left, const Column& right); void setLimits (ValueType type); void unit (const String& value); void resetRead (); int index () const; void index (int value); bool isRead () const; void isRead (bool value); long width () const; void width (long value); size_t repeat () const; bool varLength () const; double scale () const; void scale (double value); double zero () const; void zero (double value); const String& display () const; const String& dimen () const; void dimen (const String& value); ValueType type () const; void type (ValueType value); static const String& TFORM (); static const String& TDISP (); static const String& TSCAL (); static const String& TZERO (); static const String& TDIM (); const String& format () const; const String& unit () const; const String& name () const; public: // Additional Public Declarations // scalar column interface. Column's Data Member is a std::vector, // input data is std::vector, std::valarray or S* where S is not // in general the same as T. template void write (const std::vector& indata, long firstRow); void write (const std::vector >& indata, long firstRow); void write (const std::vector >& indata, long firstRow); template void write (const std::valarray& indata, long firstRow); void write (const std::valarray >& indata, long firstRow); void write (const std::valarray >& indata, long firstRow); template void write (S* indata, long nRows, long firstRow); template void write (const std::vector& indata, long firstRow, S* nullValue); template void write (const std::valarray& indata, long firstRow, S* nullValue); template void write (S* indata, long nRows, long firstRow, S* nullValue); // vector column interface. We provide an interface that allows input of a vector, valarray and C-array. // there are versions that write variable numbers of elements per row as specified // in the vectorLengths argument. The user also can directly write a vector > // object which is how the data are stored in the ColumnVectorData object. // this last one is also used internally to implement the variable lengths versions. // fixed length write to binary table from valarray. template void write (const std::valarray& indata, long nRows, long firstRow); void write (const std::valarray >& indata, long nRows, long firstRow); void write (const std::valarray >& indata, long nRows, long firstRow); template void write (const std::vector& indata, long nRows, long firstRow); void write (const std::vector >& indata, long nRows, long firstRow); void write (const std::vector >& indata, long nRows, long firstRow); template void write (S* indata, long nElements, long nRows, long firstRow); template void write (const std::valarray& indata, long nRows, long firstRow, S* nullValue); template void write (const std::vector& indata, long nRows, long firstRow, S* nullValue); template void write (S* indata, long nElements, long nRows, long firstRow, S* nullValue); // variable-length write to vector column from valarray or vector. template void write (const std::valarray& indata, const std::vector& vectorLengths, long firstRow); void write (const std::valarray >& indata, const std::vector& vectorLengths, long firstRow); void write (const std::valarray >& indata, const std::vector& vectorLengths, long firstRow); template void write (const std::vector& indata, const std::vector& vectorLengths, long firstRow); void write (const std::vector >& indata, const std::vector& vectorLengths, long firstRow); void write (const std::vector >& indata, const std::vector& vectorLengths, long firstRow); template void write (S* indata, long nElements, const std::vector& vectorLengths, long firstRow); template void writeArrays (const std::vector >& indata, long firstRow); void writeArrays (const std::vector > >& indata, long firstRow); void writeArrays (const std::vector > >& indata, long firstRow); template void writeArrays (const std::vector >& indata, long firstRow, S* nullValue); // get specified elements of a scalar column, returned as a std::vector // S is NOT the type of the column data itself, it is the type of the returned // data. template void read(std::vector& vals, long first, long last) ; // VC++, at least, won't compile these as template covering std::complex instances. void read(std::vector< std::complex >& , long first, long last); void read(std::vector< std::complex >& , long first, long last); void read(std::vector& vals, long first, long last); // return a set of rows from a scalar column as a valarray. template void read(std::valarray& vals, long first, long last) ; void read(std::valarray >& vals, long first, long last) ; void read(std::valarray >& vals, long first, long last) ; // return a single row of a vector column. template void read(std::valarray& vals, long rows) ; void read(std::valarray >& vals, long rows) ; void read(std::valarray >& vals, long rows) ; // get a set of rows from a vector column. template void readArrays(std::vector >& vals, long first, long last) ; void readArrays(std::vector > >& vals, long first, long last) ; void readArrays(std::vector > >& vals, long first, long last) ; // nullValue has no meaning when the target column has floating point/std::complex // type. Also, implict conversion of std::complex to pure real is not supported // by cfitsio. template void read(std::vector& vals, long first, long last, S* nullValue) ; // return a set of rows from a scalar column as a valarray. template void read(std::valarray& vals, long first, long last, S* nullValue); // return a single row of a vector column. template void read(std::valarray& vals, long rows, S* nullValue) ; // get a set of rows from a vector column. template void readArrays(std::vector >& vals, long first, long last, S* nullValue); // add a null value to the column template void addNullValue(T nullVal); // get the TNULL setting template bool getNullValue(T* nullVal) const; void write (const std::vector& indata, long firstRow); friend void Table::insertRows(long first, long number); friend void Table::deleteRows(long first, long number); friend void Table::deleteRows(const std::vector& rowList); friend void Table::initRead(); friend void Table::reindex(); friend void Table::copyData(const Table& right); protected: Column (int columnIndex, // The column index, i.e. the integer n in the keyword TCOLn const String &columnName, // The column name, curiously TTYPEn ValueType type, const String &format, // The TFORMn keyword. const String &unit, // The TUNITn keyword Table* p, // ! The Table containing the Column object int rpt = 1, long w = 1, const String &comment = ""); Column (Table* p = 0); virtual bool compare (const Column &right) const; fitsfile* fitsPointer (); // Protected method to set the current HDU to be the one containing this Column object. For use in // public read/write methods to ensure that data regarding numbers of rows and width relate to the // right HDU void makeHDUCurrent (); virtual std::ostream& put (std::ostream& s) const; void varLength (bool value); static const String& TBCOL (); static const String& TTYPE (); static const String& TUNIT (); static const String& TNULL (); static const String& TLMIN (); static const String& TLMAX (); static const String& TDMAX (); static const String& TDMIN (); static const std::vector& columnKeys (); const String& comment () const; // Additional Protected Declarations private: Column & operator=(const Column &right); // Insert one or more blank rows into a FITS column. virtual void insertRows (long first, long number = 1) = 0; virtual void deleteRows (long first, long number = 1) = 0; static void loadColumnKeys (); void name (const String& value); void format (const String& value); long numberOfElements (long& first, long& last); // Data Members for Class Attributes static const String s_TBCOL; static const String s_TTYPE; static const String s_TFORM; static const String s_TDISP; static const String s_TUNIT; static const String s_TSCAL; static const String s_TZERO; static const String s_TDIM; static const String s_TNULL; static const String s_TLMIN; static const String s_TLMAX; static const String s_TDMAX; static const String s_TDMIN; // Additional Private Declarations private: //## implementation // Data Members for Class Attributes int m_index; bool m_isRead; long m_width; size_t m_repeat; bool m_varLength; double m_scale; double m_zero; String m_display; String m_dimen; ValueType m_type; static const short LLIMITSHORT; static const long LLIMITLONG; static const unsigned short LLIMITUSHORT; static const unsigned long LLIMITULONG; static const unsigned char LLIMITUCHAR; static const float LLIMITFLOAT; static const double LLIMITDOUBLE; static const short ULIMITSHORT; static const long ULIMITLONG; static const unsigned short ULIMITUSHORT; static const unsigned long ULIMITULONG; static const unsigned char ULIMITUCHAR; static const float ULIMITFLOAT; static const double ULIMITDOUBLE; static const int LLIMITINT; static const int ULIMITINT; static const unsigned int LLIMITUINT; static const unsigned int ULIMITUINT; static const LONGLONG LLIMITLONGLONG; static const LONGLONG ULIMITLONGLONG; // Data Members for Associations Table* m_parent; static std::vector s_columnKeys; String m_comment; String m_format; String m_unit; String m_name; // Additional Implementation Declarations }; // Class CCfits::Column::RangeError // Class CCfits::Column::InvalidDataType // Class CCfits::Column::InvalidRowParameter // Class CCfits::Column::WrongColumnType // Class CCfits::Column::UnspecifiedLengths // Class CCfits::Column::InvalidRowNumber // Class CCfits::Column::InsufficientElements // Class CCfits::Column::NoNullValue // Class CCfits::Column::InvalidNumberOfRows // Class CCfits::Column inline void Column::setDimen () { // default implementation: do nothing. Overridden by ColumnVectorData. } inline std::ostream& operator << (std::ostream& s, const Column& right) { return right.put(s); } inline bool operator < (const Column& left, const Column& right) { return left.m_index < right.m_index; } inline bool operator > (const Column& left, const Column& right) { return left.m_index > right.m_index; } inline void Column::resetRead () { m_isRead = false; } inline int Column::index () const { return m_index; } inline void Column::index (int value) { m_index = value; } inline bool Column::isRead () const { return m_isRead; } inline void Column::isRead (bool value) { m_isRead = value; } inline long Column::width () const { return m_width; } inline void Column::width (long value) { m_width = value; } inline size_t Column::repeat () const { return m_repeat; } inline bool Column::varLength () const { return m_varLength; } inline double Column::scale () const { return m_scale; } inline void Column::scale (double value) { m_scale = value; int status(0); if (fits_set_tscale(fitsPointer(),m_index,value,m_zero,&status)) throw FitsError(status); } inline double Column::zero () const { return m_zero; } inline void Column::zero (double value) { m_zero = value; } inline const String& Column::display () const { return m_display; } inline const String& Column::dimen () const { return m_dimen; } inline void Column::dimen (const String& value) { m_dimen = value; } inline ValueType Column::type () const { return m_type; } inline void Column::type (ValueType value) { m_type = value; } inline const String& Column::TBCOL () { return s_TBCOL; } inline const String& Column::TTYPE () { return s_TTYPE; } inline const String& Column::TFORM () { return s_TFORM; } inline const String& Column::TDISP () { return s_TDISP; } inline const String& Column::TUNIT () { return s_TUNIT; } inline const String& Column::TSCAL () { return s_TSCAL; } inline const String& Column::TZERO () { return s_TZERO; } inline const String& Column::TDIM () { return s_TDIM; } inline const String& Column::TNULL () { return s_TNULL; } inline const String& Column::TLMIN () { return s_TLMIN; } inline const String& Column::TLMAX () { return s_TLMAX; } inline const String& Column::TDMAX () { return s_TDMAX; } inline const String& Column::TDMIN () { return s_TDMIN; } inline const std::vector& Column::columnKeys () { return s_columnKeys; } inline const String& Column::comment () const { return m_comment; } inline const String& Column::format () const { return m_format; } inline const String& Column::unit () const { return m_unit; } inline const String& Column::name () const { return m_name; } } // namespace CCfits #endif CCfits/ColumnT.h0000644000225700000360000016701111661525325013265 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef COLUMNT_H #define COLUMNT_H #ifdef _MSC_VER #include "MSconfig.h" #endif #include "ColumnData.h" #include "ColumnVectorData.h" #include "FITSUtil.h" #include #include #include #include "NewKeyword.h" #ifdef SSTREAM_DEFECT # include #else # include #endif // by design, if the data are not read yet we will return an exception. // here the test is if the entire column has already been read. using std::complex; using std::valarray; // get specified elements of a scalar column. These two functions allow the // user to return either a vector or a valarray depending on the input container. namespace CCfits { template void Column::read(std::vector& vals, long first, long last) { read(vals,first,last,static_cast(0)); } template void Column::read(std::vector& vals, long first, long last, S* nullValue) { // problem: S does not give the type of the Column, but the return type, // so the user must specify this. parent()->makeThisCurrent(); long nelements = numberOfElements(first,last); if (ColumnData* col = dynamic_cast*>(this)) { // fails if user requested outputType different from input type. if (!isRead()) col->readColumnData(first,nelements,nullValue); // scalar column with vector output can just be assigned. FITSUtil::fill(vals,col->data(),first,last); } else { FITSUtil::MatchType outputType; if ( outputType() == type() ) { // in this case user tried to read vector data from scalar, // (i.e. first argument was vector >. // since the cast won't fail on template parameter grounds. throw Column::WrongColumnType(name()); } try { // about exceptions. The dynamic_casts could throw // std::bad_cast. If this happens something is seriously // wrong since the Column stores the value of type() // appropriate to each of the casts on construction. // // the InvalidDataType exception should not be possible. if ( type() == Tdouble ) { ColumnData& col = dynamic_cast&>(*this); if (!isRead()) col.readColumnData(first,nelements); FITSUtil::fill(vals,col.data(),first,last); } else if (type() == Tfloat) { ColumnData& col = dynamic_cast&>(*this); if (!isRead()) col.readColumnData(first,nelements); FITSUtil::fill(vals,col.data(),first,last); } else if (type() == Tint) { int nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnData& col = dynamic_cast&>(*this); if (!isRead()) col.readColumnData(first,nelements,&nullVal); FITSUtil::fill(vals,col.data(),first,last); } else if (type() == Tshort) { short nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnData& col = dynamic_cast&>(*this); if (!isRead()) col.readColumnData(first,nelements,&nullVal); FITSUtil::fill(vals,col.data(),first,last); } else if (type() == Tlong) { long nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnData& col = dynamic_cast&>(*this); if (!isRead()) col.readColumnData(first,nelements,&nullVal); FITSUtil::fill(vals,col.data(),first,last); } else if (type() == Tlonglong) { LONGLONG nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnData& col = dynamic_cast&>(*this); if (!isRead()) col.readColumnData(first,nelements,&nullVal); FITSUtil::fill(vals,col.data(),first,last); } else if (type() == Tlogical) { bool nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnData& col = dynamic_cast&>(*this); if (!isRead()) col.readColumnData(first,nelements,&nullVal); FITSUtil::fill(vals,col.data(),first,last); } else if (type() == Tbit || type() == Tbyte) { unsigned char nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnData& col = dynamic_cast&>(*this); if (!isRead()) col.readColumnData(first,nelements,&nullVal); FITSUtil::fill(vals,col.data(),first,last); } else if (type() == Tushort) { unsigned short nullVal(0); if (nullValue) nullVal= static_cast(*nullValue); ColumnData& col = dynamic_cast&>(*this); if (!isRead()) col.readColumnData(first,nelements,&nullVal); FITSUtil::fill(vals,col.data(),first,last); } else if (type() == Tuint) { unsigned int nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnData& col = dynamic_cast&>(*this); if (!isRead()) col.readColumnData(first,nelements,&nullVal); FITSUtil::fill(vals,col.data(),first,last); } else if (type() == Tulong) { unsigned long nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnData& col = dynamic_cast&>(*this); if (!isRead()) col.readColumnData(first,nelements,&nullVal); FITSUtil::fill(vals,col.data(),first,last); } else { throw InvalidDataType(name()); } } catch (std::bad_cast) { throw WrongColumnType(name()); } } } template void Column::read(std::valarray& vals, long first, long last) { read(vals,first,last,static_cast(0)); } template void Column::read(std::valarray& vals, long first, long last, S* nullValue) { // require the whole scalar column to have been read. long nelements = numberOfElements(first,last); parent()->makeThisCurrent(); if ( ColumnData* col = dynamic_cast*>(this)) { // fails if user requested outputType different from input type. if (!isRead()) col->readColumnData(first,nelements,nullValue); FITSUtil::fill(vals,col->data(),first,last); } else { FITSUtil::MatchType outputType; if ( outputType() == type() ) { // in this case user tried to read vector data from scalar, // (i.e. first argument was vector >. // since the cast won't fail on template parameter grounds. throw Column::WrongColumnType(name()); } try { // about exceptions. The dynamic_casts could throw // std::bad_cast. If this happens something is seriously // wrong since the Column stores the value of type() // appropriate to each of the casts on construction. // // the InvalidDataType exception should not be possible. if ( type() == Tdouble ) { ColumnData& col = dynamic_cast&>(*this); if (!isRead()) col.readColumnData(first,nelements); FITSUtil::fill(vals,col.data(),first,last); } else if (type() == Tfloat) { ColumnData& col = dynamic_cast&>(*this); if (!isRead()) col.readColumnData(first,nelements); FITSUtil::fill(vals,col.data(),first,last); } else if (type() == Tint) { int nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnData& col = dynamic_cast&>(*this); if (!isRead()) col.readColumnData(first,nelements,&nullVal); FITSUtil::fill(vals,col.data(),first,last); } else if (type() == Tshort) { short nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnData& col = dynamic_cast&>(*this); if (!isRead()) col.readColumnData(first,nelements,&nullVal); FITSUtil::fill(vals,col.data(),first,last); } else if (type() == Tlong) { long nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnData& col = dynamic_cast&>(*this); if (!isRead()) col.readColumnData(first,nelements,&nullVal); FITSUtil::fill(vals,col.data(),first,last); } else if (type() == Tlonglong) { LONGLONG nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnData& col = dynamic_cast&>(*this); if (!isRead()) col.readColumnData(first,nelements,&nullVal); FITSUtil::fill(vals,col.data(),first,last); } else if (type() == Tlogical) { bool nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnData& col = dynamic_cast&>(*this); if (!isRead()) col.readColumnData(first,nelements,&nullVal); FITSUtil::fill(vals,col.data(),first,last); } else if (type() == Tbit || type() == Tbyte) { unsigned char nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnData& col = dynamic_cast&>(*this); if (!isRead()) col.readColumnData(first,nelements,&nullVal); FITSUtil::fill(vals,col.data(),first,last); } else if (type() == Tushort) { unsigned short nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnData& col = dynamic_cast&>(*this); if (!isRead()) col.readColumnData(first,nelements,&nullVal); FITSUtil::fill(vals,col.data(),first,last); } else if (type() == Tuint) { unsigned int nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnData& col = dynamic_cast&>(*this); if (!isRead()) col.readColumnData(first,nelements,&nullVal); FITSUtil::fill(vals,col.data(),first,last); } else if (type() == Tulong) { unsigned long nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnData& col = dynamic_cast&>(*this); if (!isRead()) col.readColumnData(first,nelements,&nullVal); FITSUtil::fill(vals,col.data(),first,last); } else { throw InvalidDataType(name()); } } catch (std::bad_cast) { throw WrongColumnType(name()); } } } // get a single row from a vector column. There's no default row number, must // be specified. template void Column::read(std::valarray& vals, long row) { read(vals,row,static_cast(0)); } template void Column::read(std::valarray& vals, long row, S* nullValue) { if (row > parent()->rows()) { throw Column::InvalidRowNumber(name()); } parent()->makeThisCurrent(); // isRead() returns true if the data were read in the ctor. if ( ColumnVectorData* col = dynamic_cast*>(this)) { // fails if user requested outputType different from input type. // input and output are both valarrays. Since one should not // be able to call a constructor for a non-numeric valarray type, // there shouldn't be any InvalidType problems. However, there // is still the vector/scalar possibility and the implicit // conversion request to deal with. if (!isRead()) col->readRow(row,nullValue); FITSUtil::fill(vals,col->data(row)); } else { FITSUtil::MatchType outputType; if ( outputType() == type() ) { // in this case user tried to read vector row from scalar column. // one could be charitable and return a valarray of size 1, // but... I'm going to throw an exception suggesting the user // might not have meant that. throw Column::WrongColumnType(name()); } // the InvalidDataType exception should not be possible. try { // about exceptions. The dynamic_casts could throw // std::bad_cast. If this happens something is seriously // wrong since the Column stores the value of type() // appropriate to each of the casts on construction. // // the InvalidDataType exception should not be possible. if ( type() == Tdouble || type() == VTdouble ) { ColumnVectorData& col = dynamic_cast&>(*this); if (!isRead()) col.readRow(row); FITSUtil::fill(vals,col.data(row)); } else if (type() == Tfloat || type() == VTfloat ) { ColumnVectorData& col = dynamic_cast&>(*this); if (!isRead()) col.readRow(row); FITSUtil::fill(vals,col.data(row)); } else if (type() == Tint || type() == VTint ) { int nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnVectorData& col = dynamic_cast&>(*this); if (!isRead()) col.readRow(row,&nullVal); FITSUtil::fill(vals,col.data(row)); } else if (type() == Tshort || type() == VTshort ) { short nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnVectorData& col = dynamic_cast&>(*this); if (!isRead()) col.readRow(row,&nullVal); FITSUtil::fill(vals,col.data(row)); } else if (type() == Tlong || type() == VTlong ) { long nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnVectorData& col = dynamic_cast&>(*this); if (!isRead()) col.readRow(row,&nullVal); FITSUtil::fill(vals,col.data(row)); } else if (type() == Tlonglong || type() == VTlonglong ) { LONGLONG nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnVectorData& col = dynamic_cast&>(*this); if (!isRead()) col.readRow(row,&nullVal); FITSUtil::fill(vals,col.data(row)); } else if (type() == Tlogical || type() == VTlogical ) { bool nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnVectorData& col = dynamic_cast&>(*this); if (!isRead()) col.readRow(row,&nullVal); FITSUtil::fill(vals,col.data(row)); } else if (type() == Tbit || type() == Tbyte || type() == VTbit || type() == VTbyte ) { unsigned char nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnVectorData& col = dynamic_cast&>(*this); if (!isRead()) col.readRow(row,&nullVal); FITSUtil::fill(vals,col.data(row)); } else if (type() == Tushort || type() == VTushort) { unsigned short nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnVectorData& col = dynamic_cast&>(*this); if (!isRead()) col.readRow(row,&nullVal); FITSUtil::fill(vals,col.data(row)); } else if (type() == Tuint || type() == VTuint) { unsigned int nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnVectorData& col = dynamic_cast&>(*this); if (!isRead()) col.readRow(row,&nullVal); FITSUtil::fill(vals,col.data(row)); } else if (type() == Tulong || type() == VTulong) { unsigned long nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnVectorData& col = dynamic_cast&>(*this); if (!isRead()) col.readRow(row,&nullVal); FITSUtil::fill(vals,col.data(row)); } else { throw InvalidDataType(name()); } } catch (std::bad_cast) { throw WrongColumnType(name()); } } } template void Column::readArrays(std::vector >& vals, long first, long last) { readArrays(vals,first,last,static_cast(0)); } template void Column::readArrays(std::vector >& vals, long first, long last, S* nullValue) { parent()->makeThisCurrent(); // again, can only call this if the entire column has been read from disk. // user expects 1 based indexing. If 0 based indices are supplied, // add one to both ranges. long range = numberOfElements(first,last); vals.resize(range); if ( ColumnVectorData* col = dynamic_cast*>(this)) { for (int j = 0; j < range; ++j) { if (!isRead()) col->readRow(j + first,nullValue); FITSUtil::fill(vals[j],col->data(j+first)); } } else { FITSUtil::MatchType outputType; if ( outputType() == type() ) { // in this case user tried to read vector data from scalar, // (i.e. first argument was vector >. // since the cast won't fail on template parameter grounds. throw Column::WrongColumnType(name()); } // the InvalidDataType exception should not be possible. try { if ( type() == Tdouble || type() == VTdouble ) { ColumnVectorData& col = dynamic_cast&>(*this); for (int j = 0; j < range; ++j) { if (!isRead()) col.readRow(j + first); FITSUtil::fill(vals[j],col.data(j+first)); } } else if ( type() == Tfloat || type() == VTfloat ) { ColumnVectorData& col = dynamic_cast&>(*this); for (int j = 0; j < range; ++j) { if (!isRead()) col.readRow(j + first); FITSUtil::fill(vals[j],col.data(j+first)); } } else if ( type() == Tint || type() == VTint ) { int nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnVectorData& col = dynamic_cast&>(*this); for (int j = 0; j < range; ++j) { if (!isRead()) col.readRow(j + first,&nullVal); FITSUtil::fill(vals[j],col.data(j+first)); } } else if ( type() == Tshort || type() == VTshort ) { short nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnVectorData& col = dynamic_cast&>(*this); for (int j = 0; j < range; ++j) { if (!isRead()) col.readRow(j + first,&nullVal); FITSUtil::fill(vals[j],col.data(j+first)); } } else if ( type() == Tlong || type() == VTlong ) { long nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnVectorData& col = dynamic_cast&>(*this); for (int j = 0; j < range; ++j) { if (!isRead()) col.readRow(j + first,&nullVal); FITSUtil::fill(vals[j],col.data(j+first)); } } else if ( type() == Tlonglong || type() == VTlonglong ) { LONGLONG nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnVectorData& col = dynamic_cast&>(*this); for (int j = 0; j < range; ++j) { if (!isRead()) col.readRow(j + first,&nullVal); FITSUtil::fill(vals[j],col.data(j+first)); } } else if ( type() == Tlogical || type() == VTlogical ) { bool nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnVectorData& col = dynamic_cast&>(*this); for (int j = 0; j < range; ++j) { if (!isRead()) col.readRow(j + first,&nullVal); FITSUtil::fill(vals[j],col.data(j+first)); } } else if (type() == Tbit || type() == Tbyte || type() == VTbit || type() == VTbyte ) { unsigned char nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnVectorData& col = dynamic_cast&>(*this); for (int j = 0; j < range; ++j) { if (!isRead()) col.readRow(j + first,&nullVal); FITSUtil::fill(vals[j],col.data(j+first)); } } else if ( type() == Tushort || type() == VTushort ) { unsigned short nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnVectorData& col = dynamic_cast&>(*this); for (int j = 0; j < range; ++j) { if (!isRead()) col.readRow(j + first,&nullVal); FITSUtil::fill(vals[j],col.data(j+first)); } } else if ( type() == Tuint || type() == VTuint ) { unsigned int nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnVectorData& col = dynamic_cast&>(*this); for (int j = 0; j < range; ++j) { if (!isRead()) col.readRow(j + first,&nullVal); FITSUtil::fill(vals[j],col.data(j+first)); } } else if ( type() == Tulong || type() == VTulong ) { unsigned long nullVal(0); if (nullValue) nullVal = static_cast(*nullValue); ColumnVectorData& col = dynamic_cast&>(*this); for (int j = 0; j < range; ++j) { if (!isRead()) col.readRow(j + first,&nullVal); FITSUtil::fill(vals[j],col.data(j+first)); } } else { throw InvalidDataType(name()); } } catch (std::bad_cast) { throw WrongColumnType(name()); } } } template void Column::write (const std::vector& indata, long firstRow) { // nullValue is now a pointer, so this is ok. // got to cast the 0 to a pointer to S to avoid // overloading ambiguities. write(indata,firstRow,static_cast(0)); } template void Column::write (const std::valarray& indata, long firstRow) { size_t n(indata.size()); std::vector __tmp(n); for (size_t j = 0; j < n; ++j) __tmp[j] = indata[j]; write(__tmp,firstRow,static_cast(0)); } template void Column::write (S* indata, long nRows, long firstRow) { write(indata,nRows,firstRow,static_cast(0)); } template void Column::write (const std::vector& indata, long firstRow, S* nullValue) { // although underlying code needs to convert the input vector // into a C array, this must be the underlying implementation // [which the others call] because it accepts string arguments // which the version with a pointer won't. [no version that // translates to a char** argument]. parent()->makeThisCurrent(); firstRow = std::max(firstRow,static_cast(1)); if (ColumnData* col = dynamic_cast*>(this)) { col->writeData(indata,firstRow,nullValue); } else { // alright, input data type has to be rewritten as output // data type. FITSUtil::MatchType inType; if ( inType() == type()) { String msg("Incorrect call: writing to vector column "); msg += name(); msg += " requires specification of # rows or vector lengths"; throw WrongColumnType(msg); } else { if ( type() == Tdouble ) { ColumnData& col = dynamic_cast&>(*this); std::vector __tmp; FITSUtil::fill(__tmp,indata,1,indata.size()); col.writeData(__tmp,firstRow); } else if ( type() == Tfloat ) { ColumnData& col = dynamic_cast&>(*this); std::vector __tmp; FITSUtil::fill(__tmp,indata,1,indata.size()); col.writeData(__tmp,firstRow); } else if ( type() == Tint ) { int nullVal = 0; int* pNullVal = 0; if (nullValue) { nullVal = static_cast(*nullValue); pNullVal = &nullVal; } if (nullValue) nullVal = static_cast(*nullValue); ColumnData& col = dynamic_cast&>(*this); std::vector __tmp; FITSUtil::fill(__tmp,indata,1,indata.size()); col.writeData(__tmp,firstRow,pNullVal); } else if ( type() == Tshort ) { short nullVal(0); short* pNullVal = 0; if (nullValue) { nullVal = static_cast(*nullValue); pNullVal = &nullVal; } ColumnData& col = dynamic_cast&>(*this); std::vector __tmp; FITSUtil::fill(__tmp,indata,1,indata.size()); col.writeData(__tmp,firstRow,pNullVal); } else if ( type() == Tlong ) { long nullVal(0); long* pNullVal = 0; if (nullValue) { nullVal = static_cast(*nullValue); pNullVal = &nullVal; } ColumnData& col = dynamic_cast&>(*this); std::vector __tmp; FITSUtil::fill(__tmp,indata,1,indata.size()); col.writeData(__tmp,firstRow,pNullVal); } else if ( type() == Tlonglong ) { LONGLONG nullVal(0); LONGLONG* pNullVal = 0; if (nullValue) { nullVal = static_cast(*nullValue); pNullVal = &nullVal; } ColumnData& col = dynamic_cast&>(*this); std::vector __tmp; FITSUtil::fill(__tmp,indata,1,indata.size()); col.writeData(__tmp,firstRow,pNullVal); } else if ( type() == Tlogical ) { bool nullVal(0); bool* pNullVal = 0; if (nullValue) { nullVal = static_cast(*nullValue); pNullVal = &nullVal; } ColumnData& col = dynamic_cast&>(*this); std::vector __tmp; FITSUtil::fill(__tmp,indata,1,indata.size()); col.writeData(__tmp,firstRow,pNullVal); } else if ( type() == Tbyte ) { unsigned char nullVal(0); unsigned char* pNullVal = 0; if (nullValue) { nullVal = static_cast(*nullValue); pNullVal = &nullVal; } ColumnData& col = dynamic_cast&>(*this); std::vector __tmp; FITSUtil::fill(__tmp,indata,1,indata.size()); col.writeData(__tmp,firstRow,pNullVal); } else if ( type() == Tushort ) { unsigned short nullVal(0); unsigned short* pNullVal = 0; if (nullValue) { nullVal = static_cast(*nullValue); pNullVal = &nullVal; } ColumnData& col = dynamic_cast&>(*this); std::vector __tmp; FITSUtil::fill(__tmp,indata,1,indata.size()); col.writeData(__tmp,firstRow,pNullVal); } else if ( type() == Tuint ) { unsigned int nullVal(0); unsigned int* pNullVal = 0; if (nullValue) { nullVal = static_cast(*nullValue); pNullVal = &nullVal; } ColumnData& col = dynamic_cast&>(*this); std::vector __tmp; FITSUtil::fill(__tmp,indata,1,indata.size()); col.writeData(__tmp,firstRow,pNullVal); } else if ( type() == Tulong ) { unsigned long nullVal(0); unsigned long* pNullVal = 0; if (nullValue) { nullVal = static_cast(*nullValue); pNullVal = &nullVal; } ColumnData& col = dynamic_cast&>(*this); std::vector __tmp; FITSUtil::fill(__tmp,indata,1,indata.size()); col.writeData(__tmp,firstRow,pNullVal); } else { throw InvalidDataType(name()); } } } } template void Column::write (const std::valarray& indata, long firstRow, S* nullValue) { // for scalar columns. std::vector __tmp; FITSUtil::fill(__tmp,indata); write(__tmp,firstRow,nullValue); } template void Column::write (S* indata, long nRows, long firstRow, S* nullValue) { // for scalar columns, data specified with C array if (nRows <= 0) throw InvalidNumberOfRows(nRows); std::vector __tmp(nRows); std::copy(&indata[0],&indata[nRows],__tmp.begin()); write(__tmp,firstRow, nullValue); } template void Column::write (const std::valarray& indata, const std::vector& vectorLengths, long firstRow) { // variable length arrays written from an input valarray. // does not allow NULL value. using namespace std; const size_t nRows = vectorLengths.size(); // Calculate the sums of the vector lengths first simply to do a // check against the size of indata. vector sums(nRows+1); sums[0] = 0; vector::iterator itSums = sums.begin() + 1; partial_sum(vectorLengths.begin(), vectorLengths.end(), itSums); if (indata.size() < static_cast(sums[nRows])) { #ifdef SSTREAM_DEFECT ostrstream msgStr; #else ostringstream msgStr; #endif msgStr << " input data size: " << indata.size() << " vector length sum: " << sums[nRows]; #ifdef SSTREAM_DEFECT msgStr << std::ends; #endif String msg(msgStr.str()); throw Column::InsufficientElements(msg); } vector > vvArray(nRows); for (size_t iRow=0; iRow& vArray = vvArray[iRow]; long first = sums[iRow]; long last = sums[iRow+1]; vArray.resize(last - first); for (long iElem=first; iElem(0)); } template void Column::write (const std::vector& indata,const std::vector& vectorLengths, long firstRow) { // variable length write // implement as valarray version std::valarray __tmp(indata.size()); std::copy(indata.begin(),indata.end(),&__tmp[0]); write(__tmp,vectorLengths,firstRow); } template void Column::write (S* indata, long nelements, const std::vector& vectorLengths, long firstRow) { // implement as valarray version, which will also check array size. size_t n(vectorLengths.size()); std::valarray __tmp(indata,nelements); write(__tmp,vectorLengths,firstRow); } template void Column::write (const std::valarray& indata, long nRows, long firstRow) { write(indata,nRows,firstRow,static_cast(0)); } template void Column::write (const std::vector& indata, long nRows, long firstRow) { write(indata,nRows,firstRow,static_cast(0)); } template void Column::write (S* indata, long nelements, long nRows, long firstRow) { write(indata,nelements,nRows,firstRow,static_cast(0)); } template void Column::write (const std::valarray& indata, long nRows, long firstRow, S* nullValue) { // Write equivalent lengths of data to rows of a vector column. // The column may be either fixed or variable width, but if it's fixed // width the lengths must equal the column's repeat value or an // exception is thrown. if (nRows <= 0) throw InvalidNumberOfRows(nRows); firstRow = std::max(firstRow,static_cast(1)); #ifdef SSTREAM_DEFECT std::ostrstream msgStr; #else std::ostringstream msgStr; #endif const size_t numRows = static_cast(nRows); if (indata.size() % numRows) { msgStr << "To use this write function, input array size" <<"\n must be exactly divisible by requested num rows: " << nRows; throw InsufficientElements(msgStr.str()); } const size_t cellsize = indata.size()/numRows; if (!varLength() && cellsize != repeat() ) { msgStr << "column: " << name() << "\n input data size: " << indata.size() << " required: " << nRows*repeat(); String msg(msgStr.str()); throw InsufficientElements(msg); } std::vector > vvArray(numRows); for (size_t i=0; i void Column::write (const std::vector& indata, long nRows, long firstRow, S* nullValue) { // fixed length write of vector // implement as valarray version if (nRows <= 0) throw InvalidNumberOfRows(nRows); std::valarray __tmp(indata.size()); std::copy(indata.begin(),indata.end(),&__tmp[0]); write(__tmp,nRows,firstRow, nullValue); } template void Column::write (S* indata, long nelements, long nRows, long firstRow, S* nullValue) { // fixed length write of C-array // implement as valarray version if (nRows <= 0) throw InvalidNumberOfRows(nRows); std::valarray __tmp(indata,nelements); write(__tmp,nRows,firstRow, nullValue); } template void Column::writeArrays (const std::vector >& indata, long firstRow) { // vector, no null value. writeArrays(indata,firstRow,static_cast(0)); } template void Column::writeArrays (const std::vector >& indata, long firstRow, S* nullValue) { // vector, null value. primary using std::valarray; using std::vector; parent()->makeThisCurrent(); firstRow = std::max(firstRow,static_cast(1)); if (ColumnVectorData* col = dynamic_cast*>(this)) { col->writeData(indata,firstRow,nullValue); } else { // alright, input data type has to be rewritten as output // data type. FITSUtil::MatchType inType; if ( inType() == type()) { String msg("Incorrect call: writing vectors to scalar column "); throw WrongColumnType(msg); } else { size_t n(indata.size()); if ( type() == Tdouble || type() == VTdouble) { ColumnVectorData& col = dynamic_cast&>(*this); vector > __tmp(n); for (size_t i = 0; i < n; ++i) { FITSUtil::fill(__tmp[i],indata[i]); } col.writeData(__tmp,firstRow); } else if ( type() == Tfloat || type() == VTfloat) { ColumnVectorData& col = dynamic_cast&>(*this); vector > __tmp(n); for (size_t i = 0; i < n; ++i) { FITSUtil::fill(__tmp[i],indata[i]); } col.writeData(__tmp,firstRow); } else if ( type() == Tint || type() == VTint) { ColumnVectorData& col = dynamic_cast&>(*this); vector > __tmp(n); int nullVal(0); int* pNullVal = 0; if (nullValue) { nullVal = static_cast(*nullValue); pNullVal = &nullVal; } for (size_t i = 0; i < n; ++i) { FITSUtil::fill(__tmp[i],indata[i]); } col.writeData(__tmp,firstRow,pNullVal); } else if ( type() == Tshort || type() == VTshort) { ColumnVectorData& col = dynamic_cast&>(*this); vector > __tmp(n); short nullVal(0); short* pNullVal = 0; if (nullValue) { nullVal = static_cast(*nullValue); pNullVal = &nullVal; } for (size_t i = 0; i < n; ++i) { FITSUtil::fill(__tmp[i],indata[i]); } col.writeData(__tmp,firstRow,pNullVal); } else if ( type() == Tlong || type() == VTlong) { ColumnVectorData& col = dynamic_cast&>(*this); vector > __tmp(n); long nullVal(0); long* pNullVal = 0; if (nullValue) { nullVal = static_cast(*nullValue); pNullVal = &nullVal; } for (size_t i = 0; i < n; ++i) { FITSUtil::fill(__tmp[i],indata[i]); } col.writeData(__tmp,firstRow,pNullVal); } else if ( type() == Tlonglong || type() == VTlonglong) { ColumnVectorData& col = dynamic_cast&>(*this); vector > __tmp(n); LONGLONG nullVal(0); LONGLONG* pNullVal = 0; if (nullValue) { nullVal = static_cast(*nullValue); pNullVal = &nullVal; } for (size_t i = 0; i < n; ++i) { FITSUtil::fill(__tmp[i],indata[i]); } col.writeData(__tmp,firstRow,pNullVal); } else if ( type() == Tlogical || type() == VTlogical) { ColumnVectorData& col = dynamic_cast&>(*this); bool nullVal(0); bool* pNullVal = 0; if (nullValue) { nullVal = static_cast(*nullValue); pNullVal = &nullVal; } vector > __tmp(n); for (size_t i = 0; i < n; ++i) { FITSUtil::fill(__tmp[i],indata[i]); } col.writeData(__tmp,firstRow,pNullVal); } else if ( type() == Tbyte || type() == VTbyte) { ColumnVectorData& col = dynamic_cast&>(*this); unsigned char nullVal(0); unsigned char* pNullVal = 0; if (nullValue) { nullVal = static_cast(*nullValue); pNullVal = &nullVal; } vector > __tmp(n); for (size_t i = 0; i < n; ++i) { FITSUtil::fill(__tmp[i],indata[i]); } col.writeData(__tmp,firstRow,&nullVal); } else if ( type() == Tushort || type() == VTushort) { ColumnVectorData& col = dynamic_cast&>(*this); unsigned short nullVal(0); unsigned short* pNullVal = 0; if (nullValue) { nullVal = static_cast(*nullValue); pNullVal = &nullVal; } vector > __tmp(n); for (size_t i = 0; i < n; ++i) { FITSUtil::fill(__tmp[i],indata[i]); } col.writeData(__tmp,firstRow,pNullVal); } else if ( type() == Tuint || type() == VTuint) { ColumnVectorData& col = dynamic_cast&>(*this); unsigned int nullVal(0); unsigned int* pNullVal = 0; if (nullValue) { nullVal = static_cast(*nullValue); pNullVal = &nullVal; } vector > __tmp(n); for (size_t i = 0; i < n; ++i) { FITSUtil::fill(__tmp[i],indata[i]); } col.writeData(__tmp,firstRow,pNullVal); } else if ( type() == Tulong || type() == VTulong) { ColumnVectorData& col = dynamic_cast&>(*this); unsigned long nullVal(0); unsigned long* pNullVal = 0; if (nullValue) { nullVal = static_cast(*nullValue); pNullVal = &nullVal; } vector > __tmp(n); for (size_t i = 0; i < n; ++i) { FITSUtil::fill(__tmp[i],indata[i]); } col.writeData(__tmp,firstRow,pNullVal); } else { throw InvalidDataType(name()); } } } } template void Column::addNullValue(T nullVal) { parent()->makeThisCurrent(); int status(0); #ifdef SSTREAM_DEFECT std::ostrstream keyName; keyName << "TNULL" << index() << std::ends; char* nullKey = const_cast(keyName.str()); #else std::ostringstream keyName; keyName << "TNULL" << index(); String keyNameStr = keyName.str(); char* nullKey = const_cast(keyNameStr.c_str()); #endif FITSUtil::MatchType inputType; int dataType = static_cast(inputType()); if (dataType == static_cast(Tstring)) throw InvalidDataType("attempting to set TNULLn to a string."); // update key but don't add to keyword list because it's really a column // property not a table metadata property. And it needs to be automatically // renumbered if columns are inserted or deleted. if (fits_update_key(fitsPointer(),dataType,nullKey,&nullVal,0,&status)) throw FitsError(status); // The following is called to make sure the HDU struct is immediately // updated in case a column write operation is performed shortly after this // function exits. if (fits_set_hdustruc(fitsPointer(),&status)) throw FitsError(status); } template bool Column::getNullValue(T* nullVal) const { parent()->makeThisCurrent(); #ifdef SSTREAM_DEFECT std::ostrstream keyName; keyName << "TNULL" << index() << std::ends; char* nullKey = const_cast(keyName.str()); #else std::ostringstream keyName; keyName << "TNULL" << index(); String keyNameStr = keyName.str(); char* nullKey = const_cast(keyNameStr.c_str()); #endif int status=0; FITSUtil::MatchType inputType; int dataType = static_cast(inputType()); if (dataType == static_cast(Tstring)) throw InvalidDataType("attempting to read TNULLn into a string."); T tmpVal(*nullVal); bool keyExists = false; if (fits_read_key(m_parent->fitsPointer(), dataType, nullKey, &tmpVal, 0, &status)) { if (status == KEY_NO_EXIST || status == VALUE_UNDEFINED) return keyExists; else throw FitsError(status); } keyExists = true; *nullVal = tmpVal; return keyExists; } } // namespace CCfits #endif CCfits/ColumnCreator.h0000644000225700000360000000446611470265344014465 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef COLUMNCREATOR_H #define COLUMNCREATOR_H 1 #include // ColumnVectorData #include "ColumnVectorData.h" // ColumnData #include "ColumnData.h" namespace CCfits { class Table; class Column; } // namespace CCfits #include #include namespace CCfits { class ColumnCreator { public: ColumnCreator (Table* p); virtual ~ColumnCreator(); void reset (); // getColumn is a calling function for MakeColumn, i.e. // it specifies a column in an existing file to be "got" Column * getColumn (int number, const String& name, const String& format, const String& unit = ""); // createColumn is for specifying input data for creating // new columns in tables. Column * createColumn (int number, ValueType type, const String &name, const String &format, const String &unit, long repeat = 1, long width = 1, double scaleFactor = 1., double offset = 0, const String &comment = ""); // Additional Public Declarations protected: // MakeColumn is a virtual function that makes a Column // object with appropriate data member from an existing // column in a file. virtual Column * MakeColumn (const int index, const String &name, const String &format, const String &unit, const long repeat, const long width, const String &comment = "", const int decimals = 0); // Additional Protected Declarations private: void getScaling (int index, int& type, long& repeat, long& width, double& tscale, double& tzero); const Table* parent () const; void parent (Table* value); // Additional Private Declarations private: //## implementation // Data Members for Class Attributes Column *m_column; Table* m_parent; // Additional Implementation Declarations }; // Class CCfits::ColumnCreator inline void ColumnCreator::reset () { m_column = 0; } inline const Table* ColumnCreator::parent () const { return m_parent; } inline void ColumnCreator::parent (Table* value) { m_parent = value; } } // namespace CCfits #endif CCfits/ColumnData.h0000644000225700000360000004622011470265344013731 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef COLUMNDATA_H #define COLUMNDATA_H 1 #include "CCfits.h" // vector #include // Column #include "Column.h" #ifdef _MSC_VER #include "MSconfig.h" #endif #include #include #include #include "FITSUtil.h" using std::complex; #include "FITS.h" namespace CCfits { template class ColumnData : public Column //## Inherits: %385E51565EE8 { public: ColumnData(const ColumnData< T > &right); ColumnData (Table* p = 0); ColumnData (int columnIndex, const string &columnName, ValueType type, const String &format, const String &unit, Table* p, int rpt = 1, long w = 1, const String &comment = ""); ~ColumnData(); virtual ColumnData* clone () const; virtual void readData (long firstRow, long nelements, long firstElem = 1); void setDataLimits (T* limits); const T minLegalValue () const; void minLegalValue (T value); const T maxLegalValue () const; void maxLegalValue (T value); const T minDataValue () const; void minDataValue (T value); const T maxDataValue () const; void maxDataValue (T value); const std::vector& data () const; void setData (const std::vector& value); T data (int i); void data (int i, T value); // Additional Public Declarations friend class Column; protected: // Additional Protected Declarations private: ColumnData< T > & operator=(const ColumnData< T > &right); void readColumnData (long firstRow, long nelements, T* nullValue = 0); virtual bool compare (const Column &right) const; virtual std::ostream& put (std::ostream& s) const; void writeData (T* indata, long nRows = 1, long firstRow = 1, T* nullValue = 0); void writeData (const std::vector& indata, long firstRow = 1, T* nullValue = 0); // Insert one or more blank rows into a FITS column. virtual void insertRows (long first, long number = 1); virtual void deleteRows (long first, long number = 1); // Additional Private Declarations private: //## implementation // Data Members for Class Attributes T m_minLegalValue; T m_maxLegalValue; T m_minDataValue; T m_maxDataValue; // Data Members for Associations std::vector m_data; // Additional Implementation Declarations }; // Parameterized Class CCfits::ColumnData template inline void ColumnData::readData (long firstRow, long nelements, long firstElem) { readColumnData(firstRow,nelements,static_cast(0)); } template inline const T ColumnData::minLegalValue () const { return m_minLegalValue; } template inline void ColumnData::minLegalValue (T value) { m_minLegalValue = value; } template inline const T ColumnData::maxLegalValue () const { return m_maxLegalValue; } template inline void ColumnData::maxLegalValue (T value) { m_maxLegalValue = value; } template inline const T ColumnData::minDataValue () const { return m_minDataValue; } template inline void ColumnData::minDataValue (T value) { m_minDataValue = value; } template inline const T ColumnData::maxDataValue () const { return m_maxDataValue; } template inline void ColumnData::maxDataValue (T value) { m_maxDataValue = value; } template inline const std::vector& ColumnData::data () const { return m_data; } template inline void ColumnData::setData (const std::vector& value) { m_data = value; } template inline T ColumnData::data (int i) { // return data stored in the ith row, which is in the i-1 th location in the array. return m_data[i - 1]; } template inline void ColumnData::data (int i, T value) { // assign data to i-1 th location in the array, representing the ith row. m_data[i - 1] = value; } // Parameterized Class CCfits::ColumnData template ColumnData::ColumnData(const ColumnData &right) :Column(right), m_minLegalValue(right.m_minLegalValue), m_maxLegalValue(right.m_maxLegalValue), m_minDataValue(right.m_minDataValue), m_maxDataValue(right.m_maxDataValue), m_data(right.m_data) { } template ColumnData::ColumnData (Table* p) : Column(p), m_minLegalValue(), m_maxLegalValue(), m_minDataValue(), m_maxDataValue(), m_data() { } template ColumnData::ColumnData (int columnIndex, const string &columnName, ValueType type, const String &format, const String &unit, Table* p, int rpt, long w, const String &comment) : Column(columnIndex,columnName,type,format,unit,p,rpt,w,comment), m_minLegalValue(), m_maxLegalValue(), m_minDataValue(), m_maxDataValue(), m_data() { } template ColumnData::~ColumnData() { } template void ColumnData::readColumnData (long firstRow, long nelements, T* nullValue) { if ( rows() < nelements ) { std::cerr << "CCfits: More data requested than contained in table. "; std::cerr << "Extracting complete column.\n"; nelements = rows(); } int status(0); int anynul(0); FITSUtil::auto_array_ptr array(new T[nelements]); makeHDUCurrent(); if ( fits_read_col(fitsPointer(),type(), index(), firstRow, 1, nelements, nullValue, array.get(), &anynul, &status) ) throw FitsError(status); if (m_data.size() != static_cast( rows() ) ) m_data.resize(rows()); std::copy(&array[0],&array[nelements],m_data.begin()+firstRow-1); if (nelements == rows()) isRead(true); } template bool ColumnData::compare (const Column &right) const { if ( !Column::compare(right) ) return false; const ColumnData& that = static_cast&>(right); unsigned int n = m_data.size(); if ( that.m_data.size() != n ) return false; for (unsigned int i = 0; i < n ; i++) { if (m_data[i] != that.m_data[i]) return false; } return true; } template ColumnData* ColumnData::clone () const { return new ColumnData(*this); } template std::ostream& ColumnData::put (std::ostream& s) const { Column::put(s); if (FITS::verboseMode() && type() != Tstring) { s << " Column Legal limits: ( " << m_minLegalValue << "," << m_maxLegalValue << " )\n" << " Column Data limits: ( " << m_minDataValue << "," << m_maxDataValue << " )\n"; } if (!m_data.empty()) { std::ostream_iterator output(s,"\n"); // output each row on a separate line. // user can supply manipulators to stream for formatting. std::copy(m_data.begin(),m_data.end(),output); } return s; } template void ColumnData::writeData (T* indata, long nRows, long firstRow, T* nullValue) { // set columnData's data member to equal what's written to file. // indata has size nRows: elements firstRow to firstRow + nRows - 1 will be written. // if this exceeds the current rowlength of the HDU, update the return value for // rows() in the parent after the fitsio call. int status(0); long elementsToWrite(nRows + firstRow -1); // get a copy for restorative action. std::vector __tmp(m_data); if (elementsToWrite != static_cast(m_data.size())) { m_data.resize(elementsToWrite,T()); } std::copy(&indata[0],&indata[nRows],m_data.begin()+firstRow-1); // if successful, write to disk. try { if (nullValue) { if (fits_write_colnull(fitsPointer(), type(), index(), firstRow, 1, nRows, indata, nullValue, &status) != 0) throw FitsError(status); } else { if (fits_write_col(fitsPointer(), type(), index(), firstRow, 1, nRows, indata, &status) != 0) throw FitsError(status); } // tell the Table that the number of rows has changed parent()->updateRows(); } catch (FitsError) // the only thing that can throw here. { // reset to original content and rethrow the exception. m_data = __tmp; if (status == NO_NULL) throw NoNullValue(name()); else throw; } } template void ColumnData::writeData (const std::vector& indata, long firstRow, T* nullValue) { FITSUtil::CVarray convert; FITSUtil::auto_array_ptr pcolData (convert(indata)); T* columnData = pcolData.get(); writeData(columnData,indata.size(),firstRow,nullValue); } template void ColumnData::insertRows (long first, long number) { FITSUtil::FitsNullValue blank; typename std::vector::iterator in; if (first !=0) { in = m_data.begin()+first; } else { in = m_data.begin(); } // non-throwing operations. m_data.insert(in,number,blank()); } template void ColumnData::deleteRows (long first, long number) { m_data.erase(m_data.begin()+first-1,m_data.begin()+first-1+number); } template void ColumnData::setDataLimits (T* limits) { m_minLegalValue = limits[0]; m_maxLegalValue = limits[1]; m_minDataValue = std::max(limits[2],limits[0]); m_maxDataValue = std::min(limits[3],limits[1]); } // Additional Declarations // all functions that operate on strings or complex data that call cfitsio // need to be specialized. #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT template <> inline void ColumnData >::setDataLimits (complex* limits) { m_minLegalValue = limits[0]; m_maxLegalValue = limits[1]; m_minDataValue = limits[2]; m_maxDataValue = limits[3]; } #else template <> void ColumnData >::setDataLimits (complex* limits); #endif #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT template <> inline void ColumnData >::setDataLimits (complex* limits) { m_minLegalValue = limits[0]; m_maxLegalValue = limits[1]; m_minDataValue = limits[2]; m_maxDataValue = limits[3]; } #else template <> void ColumnData >::setDataLimits (complex* limits); #endif #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT template <> inline void ColumnData::readColumnData (long firstRow, long nelements, string* nullValue) { int status = 0; int anynul = 0; char** array = new char*[nelements]; int j(0); for ( ; j < nelements; ++j) { array[j] = new char[width() + 1]; } char* nulval = 0; if (nullValue) { nulval = const_cast(nullValue->c_str()); } else { nulval = new char; *nulval = '\0'; } try { makeHDUCurrent(); if (fits_read_col_str(fitsPointer(),index(), firstRow,1,nelements, nulval,array, &anynul,&status) ) throw FitsError(status); } catch (FitsError) { // ugly. but better than leaking resources. for (int jj = 0; jj < nelements; ++jj) { delete [] array[jj]; } delete [] array; delete nulval; throw; } if (m_data.size() != rows()) setData(std::vector(rows(),string(nulval))); // the 'first -1 ' converts to zero based indexing. for ( j = 0; j < nelements; j++) { m_data[j - 1 + firstRow] = string(array[j]); } for ( j = 0; j < nelements; j++) { delete [] array[j]; } delete [] array; delete nulval; if (nelements == rows()) isRead(true); } #else template <> void ColumnData::readColumnData (long firstRow, long nelements, string* nullValue); #endif #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT template <> inline void ColumnData >::readColumnData (long firstRow, long nelements, complex* nullValue) { // specialization for ColumnData int status(0); int anynul(0); FITSUtil::auto_array_ptr pArray(new float[nelements*2]); float* array = pArray.get(); float nulval(0); makeHDUCurrent(); if (fits_read_col_cmp(fitsPointer(),index(), firstRow,1,nelements, nulval,array, &anynul,&status) ) throw FitsError(status); if (m_data.size() != rows()) m_data.resize(rows()); // the 'j -1 ' converts to zero based indexing. for (int j = 0; j < nelements; ++j) { m_data[j - 1 + firstRow] = std::complex(array[2*j],array[2*j+1]); } if (nelements == rows()) isRead(true); } #else template <> void ColumnData >::readColumnData (long firstRow, long nelements,complex* nullValue ); #endif #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT template <> inline void ColumnData >::readColumnData (long firstRow, long nelements, complex* nullValue) { // specialization for ColumnData > int status(0); int anynul(0); FITSUtil::auto_array_ptr pArray(new double[nelements*2]); double* array = pArray.get(); double nulval(0); makeHDUCurrent(); if (fits_read_col_dblcmp(fitsPointer(), index(), firstRow,1,nelements, nulval,array, &anynul,&status) ) throw FitsError(status); if (m_data.size() != rows()) setData(std::vector >(rows(),nulval)); // the 'j -1 ' converts to zero based indexing. for (int j = 0; j < nelements; j++) { m_data[j - 1 + firstRow] = std::complex(array[2*j],array[2*j+1]); } if (nelements == rows()) isRead(true); } #else template <> void ColumnData >::readColumnData (long firstRow, long nelements,complex* nullValue); #endif #if SPEC_TEMPLATE_DECL_DEFECT template <> inline void ColumnData::writeData (const std::vector& indata, long firstRow, string* nullValue) { int status=0; char** columnData=FITSUtil::CharArray(indata); if ( fits_write_colnull(fitsPointer(), TSTRING, index(), firstRow, 1, indata.size(), columnData, 0, &status) != 0 ) throw FitsError(status); unsigned long elementsToWrite (indata.size() + firstRow - 1); std::vector __tmp(m_data); if (m_data.size() < elementsToWrite) { m_data.resize(elementsToWrite,""); std::copy(__tmp.begin(),__tmp.end(),m_data.begin()); } std::copy(indata.begin(),indata.end(),m_data.begin()+firstRow-1); for (size_t i = 0; i < indata.size(); ++i) { delete [] columnData[i]; } delete [] columnData; } #else template <> void ColumnData::writeData (const std::vector& inData, long firstRow, string* nullValue); #endif #ifdef SPEC_TEMPLATE_DECL_DEFECT template <> inline void ColumnData >::writeData (const std::vector >& inData, long firstRow, complex* nullValue) { int status(0); int nRows (inData.size()); FITSUtil::auto_array_ptr pData(new float[nRows*2]); float* Data = pData.get(); std::vector > __tmp(m_data); for (int j = 0; j < nRows; ++j) { Data[ 2*j] = inData[j].real(); Data[ 2*j + 1] = inData[j].imag(); } try { if (fits_write_col_cmp(fitsPointer(), index(), firstRow, 1, nRows,Data, &status) != 0) throw FitsError(status); long elementsToWrite(nRows + firstRow -1); if (elementsToWrite > static_cast(m_data.size())) { m_data.resize(elementsToWrite); } std::copy(inData.begin(),inData.end(),m_data.begin()+firstRow-1); // tell the Table that the number of rows has changed parent()->updateRows(); } catch (FitsError) // the only thing that can throw here. { // reset to original content and rethrow the exception. m_data.resize(__tmp.size()); m_data = __tmp; } } #else template <> void ColumnData >::writeData (const std::vector >& inData, long firstRow, complex* nullValue); #endif #ifdef SPEC_TEMPLATE_DECL_DEFECT template <> inline void ColumnData >::writeData (const std::vector >& inData, long firstRow, complex* nullValue) { int status(0); int nRows (inData.size()); FITSUtil::auto_array_ptr pData(new double[nRows*2]); double* Data = pData.get(); std::vector > __tmp(m_data); for (int j = 0; j < nRows; ++j) { pData[ 2*j] = inData[j].real(); pData[ 2*j + 1] = inData[j].imag(); } try { if (fits_write_col_dblcmp(fitsPointer(), index(), firstRow, 1, nRows,Data, &status) != 0) throw FitsError(status); long elementsToWrite(nRows + firstRow -1); if (elementsToWrite > static_cast(m_data.size())) { m_data.resize(elementsToWrite); } std::copy(inData.begin(),inData.end(),m_data.begin()+firstRow-1); // tell the Table that the number of rows has changed parent()->updateRows(); } catch (FitsError) // the only thing that can throw here. { // reset to original content and rethrow the exception. m_data.resize(__tmp.size()); m_data = __tmp; } } #else template <> void ColumnData >::writeData (const std::vector >& inData, long firstRow, complex* nullValue); #endif } // namespace CCfits #endif CCfits/ColumnVectorData.h0000644000225700000360000012413211656772431015121 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef COLUMNVECTORDATA_H #define COLUMNVECTORDATA_H 1 #ifdef _MSC_VER #include "MSconfig.h" #endif #include "CCfits.h" // valarray #include // vector #include // Column #include "Column.h" #ifdef HAVE_CONFIG_H #include "config.h" #endif #ifdef SSTREAM_DEFECT #include #else #include #endif #include #include namespace CCfits { class Table; } #include "FITS.h" #include "FITSUtil.h" using std::complex; namespace CCfits { template class ColumnVectorData : public Column //## Inherits: %38BAD1D4D370 { public: ColumnVectorData(const ColumnVectorData< T > &right); ColumnVectorData (Table* p = 0); ColumnVectorData (int columnIndex, const string &columnName, ValueType type, const string &format, const string &unit, Table* p, int rpt = 1, long w = 1, const string &comment = ""); ~ColumnVectorData(); virtual void readData (long firstrow, long nelements, long firstelem = 1); virtual ColumnVectorData* clone () const; virtual void setDimen (); void setDataLimits (T* limits); const T minLegalValue () const; void minLegalValue (T value); const T maxLegalValue () const; void maxLegalValue (T value); const T minDataValue () const; void minDataValue (T value); const T maxDataValue () const; void maxDataValue (T value); const std::vector >& data () const; void setData (const std::vector >& value); const std::valarray& data (int i) const; void data (int i, const std::valarray& value); // Additional Public Declarations friend class Column; protected: // Additional Protected Declarations private: ColumnVectorData< T > & operator=(const ColumnVectorData< T > &right); virtual bool compare (const Column &right) const; void resizeDataObject (const std::vector >& indata, size_t firstRow); // Reads a specified number of column rows. // // There are no default arguments. The function // Column::read(firstrow,firstelem,nelements) // is designed for reading the whole column. virtual void readColumnData (long first, long last, T* nullValue = 0); virtual std::ostream& put (std::ostream& s) const; void writeData (const std::valarray& indata, long numRows, long firstRow = 1, T* nullValue = 0); void writeData (const std::vector >& indata, long firstRow = 1, T* nullValue = 0); // Reads a specified number of column rows. // // There are no default arguments. The function // Column::read(firstrow,firstelem,nelements) // is designed for reading the whole column. virtual void readRow (size_t row, T* nullValue = 0); // Reads a variable row.. virtual void readVariableRow (size_t row, T* nullValue = 0); void readColumnData (long firstrow, long nelements, long firstelem, T* nullValue = 0); void writeData (const std::valarray& indata, const std::vector& vectorLengths, long firstRow = 1, T* nullValue = 0); void writeFixedRow (const std::valarray& data, long row, long firstElem = 1, T* nullValue = 0); void writeFixedArray (T* data, long nElements, long nRows, long firstRow, T* nullValue = 0); // Insert one or more blank rows into a FITS column. virtual void insertRows (long first, long number = 1); virtual void deleteRows (long first, long number = 1); void doWrite (T* array, long row, long rowSize, long firstElem, T* nullValue); // Additional Private Declarations private: //## implementation // Data Members for Class Attributes T m_minLegalValue; T m_maxLegalValue; T m_minDataValue; T m_maxDataValue; // Data Members for Associations std::vector > m_data; // Additional Implementation Declarations }; // Parameterized Class CCfits::ColumnVectorData template inline void ColumnVectorData::readData (long firstrow, long nelements, long firstelem) { readColumnData(firstrow,nelements,firstelem,static_cast(0)); } template inline const T ColumnVectorData::minLegalValue () const { return m_minLegalValue; } template inline void ColumnVectorData::minLegalValue (T value) { m_minLegalValue = value; } template inline const T ColumnVectorData::maxLegalValue () const { return m_maxLegalValue; } template inline void ColumnVectorData::maxLegalValue (T value) { m_maxLegalValue = value; } template inline const T ColumnVectorData::minDataValue () const { return m_minDataValue; } template inline void ColumnVectorData::minDataValue (T value) { m_minDataValue = value; } template inline const T ColumnVectorData::maxDataValue () const { return m_maxDataValue; } template inline void ColumnVectorData::maxDataValue (T value) { m_maxDataValue = value; } template inline const std::vector >& ColumnVectorData::data () const { return m_data; } template inline void ColumnVectorData::setData (const std::vector >& value) { m_data = value; } template inline const std::valarray& ColumnVectorData::data (int i) const { return m_data[i - 1]; } template inline void ColumnVectorData::data (int i, const std::valarray& value) { if (m_data[i-1].size() != value.size()) m_data[i-1].resize(value.size()); m_data[i - 1] = value; } // Parameterized Class CCfits::ColumnVectorData template ColumnVectorData::ColumnVectorData(const ColumnVectorData &right) :Column(right), m_minLegalValue(right.m_minLegalValue), m_maxLegalValue(right.m_maxLegalValue), m_minDataValue(right.m_minDataValue), m_maxDataValue(right.m_maxDataValue), m_data(right.m_data) { } template ColumnVectorData::ColumnVectorData (Table* p) : Column(p), m_minLegalValue(0), m_maxLegalValue(0), m_minDataValue(0), m_maxDataValue(0), m_data() { } template ColumnVectorData::ColumnVectorData (int columnIndex, const string &columnName, ValueType type, const string &format, const string &unit, Table* p, int rpt, long w, const string &comment) : Column(columnIndex,columnName,type,format,unit,p,rpt,w,comment), m_minLegalValue(0), m_maxLegalValue(0), m_minDataValue(0), m_maxDataValue(0), m_data() { } template ColumnVectorData::~ColumnVectorData() { // valarray destructor should do all the work. } template bool ColumnVectorData::compare (const Column &right) const { if ( !Column::compare(right) ) return false; const ColumnVectorData& that = static_cast&>(right); size_t n = m_data.size(); // m_data is of type valarray. if ( that.m_data.size() != n ) return false; for (size_t i = 0; i < n ; i++) { size_t nn = m_data[i].size(); // first check size (also, == on 2 valarrays is only defined if they // are equal in size). if (that.m_data[i].size() != nn ) return false; std::valarray test = (m_data[i] == that.m_data[i]); for (size_t j = 0; j < nn ; j++ ) if ( !test[j] ) return false; } return true; } template ColumnVectorData* ColumnVectorData::clone () const { return new ColumnVectorData(*this); } template void ColumnVectorData::resizeDataObject (const std::vector >& indata, size_t firstRow) { // the rows() call is the value before updating. // the updateRows() call at the end sets the call to return the // value from the fits pointer - which is changed by writeFixedArray // or writeFixedRow. const size_t lastInputRow(indata.size() + firstRow - 1); const size_t newLastRow = std::max(lastInputRow,static_cast(rows())); // if the write instruction increases the rows, we need to add // rows to the data member and preserve its current contents. // rows() >= origNRows since it is the value for entire table, // not just this column. const size_t origNRows(m_data.size()); // This will always be an expansion. vector.resize() doesn't // invalidate any data on an expansion. if (newLastRow > origNRows) m_data.resize(newLastRow); if (varLength()) { // The incoming data will determine each row size, thus // no need to preserve any existing values in the row. // Each value will eventually be overwritten. for (size_t iRow = firstRow-1; iRow < lastInputRow; ++iRow) { std::valarray& current = m_data[iRow]; const size_t newSize = indata[iRow - (firstRow-1)].size(); if (current.size() != newSize) current.resize(newSize); } } else { // All row sizes in m_data should ALWAYS be either repeat(), // or 0 if they haven't been initialized. This is true regardless // of the incoming data row size. // Perform LAZY initialization of m_data rows. Only // expand a row valarray when it is first needed. for (size_t iRow = firstRow-1; iRow < lastInputRow; ++iRow) { if (m_data[iRow].size() != repeat()) m_data[iRow].resize(repeat()); } } } template void ColumnVectorData::setDimen () { int status(0); FITSUtil:: auto_array_ptr dimValue (new char[FLEN_VALUE]); #ifdef SSTREAM_DEFECT std::ostrstream key; #else std::ostringstream key; #endif key << "TDIM" << index(); #ifdef SSTREAM_DEFECT fits_read_key_str(fitsPointer(), key.str(), dimValue.get(),0,&status); #else fits_read_key_str(fitsPointer(),const_cast(key.str().c_str()),dimValue.get(),0,&status); #endif if (status == 0) { dimen(String(dimValue.get())); } } template void ColumnVectorData::readColumnData (long first, long last, T* nullValue) { makeHDUCurrent(); if ( rows() < last ) { std::cerr << "CCfits: More data requested than contained in table. "; std::cerr << "Extracting complete column.\n"; last = rows(); } long nelements = (last - first + 1)*repeat(); readColumnData(first,nelements,1,nullValue); if (first <= 1 && last == rows()) isRead(true); } template std::ostream& ColumnVectorData::put (std::ostream& s) const { // output header information Column::put(s); if ( FITS::verboseMode() ) { s << " Column Legal limits: ( " << m_minLegalValue << "," << m_maxLegalValue << " )\n" << " Column Data limits: ( " << m_minDataValue << "," << m_maxDataValue << " )\n"; } if (!m_data.empty()) { for (size_t j = 0; j < m_data.size(); j++) { size_t n = m_data[j].size(); if ( n ) { s << "Row " << j + 1 << " Vector Size " << n << '\n'; for (size_t k = 0; k < n - 1; k++) { s << m_data[j][k] << '\t'; } s << m_data[j][n - 1] << '\n'; } } } return s; } template void ColumnVectorData::writeData (const std::valarray& indata, long numRows, long firstRow, T* nullValue) { // This version of writeData is called by Column write functions which // can only write the same number of elements to each row. // For fixed width columns, this must be equal to the repeat value // or an exception is thrown. For variable width, it only requires // that indata.size()/numRows is an int. // won't do anything if < 0, and will give divide check if == 0. if (numRows <= 0) throw InvalidNumberOfRows(numRows); #ifdef SSTREAM_DEFECT std::ostrstream msgStr; #else std::ostringstream msgStr; #endif if (indata.size() % static_cast(numRows)) { msgStr << "To use this write function, input array size" <<"\n must be exactly divisible by requested num rows: " << numRows; throw InsufficientElements(msgStr.str()); } const size_t cellsize = indata.size()/static_cast(numRows); if (!varLength() && cellsize != repeat() ) { msgStr << "column: " << name() << "\n input data size: " << indata.size() << " required: " << numRows*repeat(); String msg(msgStr.str()); throw InsufficientElements(msg); } std::vector > internalFormat(numRows); // support writing equal row lengths to variable columns. for (long j = 0; j < numRows; ++j) { internalFormat[j].resize(cellsize); internalFormat[j] = indata[std::slice(cellsize*j,cellsize,1)]; } // change the size of m_data based on the first row to be written // and on the input data vector sizes. writeData(internalFormat,firstRow,nullValue); } template void ColumnVectorData::writeData (const std::vector >& indata, long firstRow, T* nullValue) { // This is called directly by Column's writeArrays functions, and indirectly // by both categories of write functions, ie. those which allow differing // lengths per row and those that don't. const size_t nInputRows(indata.size()); using std::valarray; resizeDataObject(indata,firstRow); // After the above call, can assume all m_data arrays to be written to // have been properly resized whether we're dealing with fixed or // variable length. if (varLength()) { // firstRow is 1-based, but all these internal row variables // will be 0-based. const size_t endRow = nInputRows + firstRow-1; for (size_t iRow = firstRow-1; iRow < endRow; ++iRow) { m_data[iRow] = indata[iRow - (firstRow-1)]; // doWrite wants 1-based rows. doWrite(&m_data[iRow][0], iRow+1, m_data[iRow].size(), 1, nullValue); } parent()->updateRows(); } else { // Check for simplest case of all valarrays of size repeat(). // If any are greater, throw an error. const size_t colRepeat = repeat(); bool allEqualRepeat = true; for (size_t i=0; i colRepeat) { #ifdef SSTREAM_DEFECT std::ostrstream oss; #else std::ostringstream oss; #endif oss << " vector column length " << colRepeat <<", input valarray length " << sz; throw InvalidRowParameter(oss.str()); } if (sz < colRepeat) allEqualRepeat = false; } if (allEqualRepeat) { // concatenate the valarrays and write. const size_t nElements (colRepeat*nInputRows); FITSUtil::CVAarray convert; FITSUtil::auto_array_ptr pArray(convert(indata)); T* array = pArray.get(); // if T is complex, then CVAarray returns a // C-array of complex objects. But FITS requires an array of complex's // value_type. // This writes to the file and also calls updateRows. writeFixedArray(array,nElements,nInputRows,firstRow,nullValue); for (size_t j = 0; j < nInputRows ; ++j) { const valarray& input = indata[j]; valarray& current = m_data[j + firstRow - 1]; // current should be resized by resizeDataObject. current = input; } } else { // Some input arrays have fewer than colRepeat elements. const size_t endRow = nInputRows + firstRow-1; for (size_t iRow = firstRow-1; iRow& input = indata[iRow-(firstRow-1)]; writeFixedRow(input, iRow, 1, nullValue); } parent()->updateRows(); } } // end if !varLength } template void ColumnVectorData::readRow (size_t row, T* nullValue) { makeHDUCurrent(); if ( row > static_cast(rows()) ) { #ifdef SSTREAM_DEFECT std::ostrstream msg; #else std::ostringstream msg; #endif msg << " row requested: " << row << " row range: 1 - " << rows(); #ifdef SSTREAM_DEFECT msg << std::ends; #endif throw Column::InvalidRowNumber(msg.str()); } // this is really for documentation purposes. I expect the optimizer will // remove this redundant definition . bool variable(type() < 0); long nelements(repeat()); if (variable) { readVariableRow(row,nullValue); } else { readColumnData(row,nelements,1,nullValue); } } template void ColumnVectorData::readVariableRow (size_t row, T* nullValue) { int status(0); long offset(0); long repeat(0); if (fits_read_descript(fitsPointer(),index(),static_cast(row), &repeat,&offset,&status)) throw FitsError(status); readColumnData(row,repeat,1,nullValue); } template void ColumnVectorData::readColumnData (long firstrow, long nelements, long firstelem, T* nullValue) { int status=0; FITSUtil::auto_array_ptr pArray(new T[nelements]); T* array = pArray.get(); int anynul(0); if (fits_read_col(fitsPointer(), abs(type()),index(), firstrow, firstelem, nelements, nullValue, array, &anynul, &status) != 0) throw FitsError(status); size_t countRead = 0; const size_t ONE = 1; if (m_data.size() != static_cast(rows())) m_data.resize(rows()); size_t vectorSize(0); if (!varLength()) { vectorSize = std::max(repeat(),ONE); // safety check. } else { // assume that the user specified the correct length for // variable columns. This should be ok since readVariableColumns // uses fits_read_descripts to return this information from the // fits pointer, and this is passed as nelements here. vectorSize = nelements; } size_t n = nelements; int i = firstrow; int ii = i - 1; while ( countRead < n) { std::valarray& current = m_data[ii]; if (current.size() != vectorSize) current.resize(vectorSize); int elementsInFirstRow = vectorSize-firstelem + 1; bool lastRow = ( (nelements - countRead) < vectorSize); if (lastRow) { int elementsInLastRow = nelements - countRead; std::valarray ttmp(array + vectorSize*(ii-firstrow) + elementsInFirstRow, elementsInLastRow); for (int kk = 0; kk < elementsInLastRow; kk++) current[kk] = ttmp[kk]; countRead += elementsInLastRow; } // what to do with complete rows else { if (firstelem == 1 || (firstelem > 1 && i > firstrow) ) { std::valarray ttmp(array + vectorSize*(ii - firstrow) + elementsInFirstRow,vectorSize); current = ttmp; ii++; i++; countRead += vectorSize; } else { if (i == firstrow) { std::valarray ttmp(array,elementsInFirstRow); for (size_t kk = firstelem ; kk < vectorSize ; kk++) current[kk] = ttmp[kk-firstelem]; countRead += elementsInFirstRow; i++; ii++; } } } } } template void ColumnVectorData::writeData (const std::valarray& indata, const std::vector& vectorLengths, long firstRow, T* nullValue) { // Called from Column write functions which allow differing lengths // for each row. using namespace std; const size_t N(vectorLengths.size()); vector sums(N); // pre-calculate partial sums of vector lengths for use as array offsets. partial_sum(vectorLengths.begin(),vectorLengths.end(),sums.begin()); // check that sufficient data have been supplied to carry out the entire operation. if (indata.size() < static_cast(sums[N-1]) ) { #ifdef SSTREAM_DEFECT ostrstream msgStr; #else ostringstream msgStr; #endif msgStr << " input data size: " << indata.size() << " vector length sum: " << sums[N-1]; #ifdef SSTREAM_DEFECT msgStr << std::ends; #endif String msg(msgStr.str()); throw InsufficientElements(msg); } vector > vvArray(N); long& last = sums[0]; vvArray[0].resize(last); for (long jj = 0; jj < last; ++jj) vvArray[0][jj] = indata[jj]; for (size_t j = 1; j < N; ++j) { valarray& __tmp = vvArray[j]; // these make the code much more readable long& first = sums[j-1]; long& jlast = sums[j]; __tmp.resize(jlast - first); for (long k = first; k < jlast; ++k) { __tmp[k - first] = indata[k]; } } writeData(vvArray,firstRow,nullValue); } template void ColumnVectorData::writeFixedRow (const std::valarray& data, long row, long firstElem, T* nullValue) { // This is to be called only for FIXED length vector columns. It will // throw if data.size()+firstElem goes beyond the repeat value. // If data.size() is less than repeat, it leaves the remaining values // undisturbed both in the file and in m_data storage. #ifdef SSTREAM_DEFECT std::ostrstream msgStr; #else std::ostringstream msgStr; #endif if (varLength()) { msgStr <<"Calling ColumnVectorData::writeFixedRow for a variable length column.\n"; throw FitsFatal(msgStr.str()); } std::valarray& storedRow = m_data[row]; long inputSize = static_cast(data.size()); long storedSize(storedRow.size()); if (storedSize != static_cast(repeat())) { msgStr<<"stored array size vs. column width mismatch in ColumnVectorData::writeFixedRow.\n"; throw FitsFatal(msgStr.str()); } if (inputSize + firstElem - 1 > storedSize) { msgStr << " requested write " << firstElem << " to " << firstElem + inputSize - 1 << " exceeds vector length " << repeat(); throw InvalidRowParameter(msgStr.str()); } // CANNOT give a strong exception safety guarantee because writing // data changes the file. Any corrective action that could be taken // [e.g. holding initial contents of the row and writing it back after // an exception is thrown] could in principle throw the same exception // we are trying to protect from. // routine does however give the weak guarantee (no resource leaks). // It's never a good thing to cast away a const, but doWrite calls the // CFITSIO write functions which take a non-const pointer (though // it shouldn't actually modify the array), and I'd rather not // copy the entire valarray just to avoid this problem. std::valarray& lvData = const_cast&>(data); T* inPointer = &lvData[0]; doWrite(inPointer, row+1, inputSize, firstElem, nullValue); // Writing to disk was successful, now update FITS object and return. const size_t offset = static_cast(firstElem) - 1; for (size_t iElem=0; iElem < static_cast(inputSize); ++iElem) { // This doesn't require inPointer's non-constness. It's just // used here to speed things up a bit. storedRow[iElem + offset] = inPointer[iElem]; } } template void ColumnVectorData::writeFixedArray (T* data, long nElements, long nRows, long firstRow, T* nullValue) { int status(0); // check for sanity of inputs, then write to file. // this function writes only complete rows to a table with // fixed width rows. if ( nElements < nRows*static_cast(repeat()) ) { #ifdef SSTREAM_DEFECT std::ostrstream msgStr; #else std::ostringstream msgStr; #endif msgStr << " input array size: " << nElements << " required " << nRows*repeat(); String msg(msgStr.str()); throw Column::InsufficientElements(msg); } if (nullValue) { if (fits_write_colnull(fitsPointer(),abs(type()),index(),firstRow, 1,nElements,data,nullValue,&status)) throw FitsError(status); } else { if (fits_write_col(fitsPointer(),abs(type()),index(),firstRow, 1,nElements,data,&status)) throw FitsError(status); } parent()->updateRows(); } template void ColumnVectorData::insertRows (long first, long number) { typename std::vector >::iterator in; if (first !=0) { in = m_data.begin()+first; } else { in = m_data.begin(); } // non-throwing operations. m_data.insert(in,number,std::valarray(T(),0)); } template void ColumnVectorData::deleteRows (long first, long number) { // the following is an ugly workaround for a bug in g++ v3.0 that // does not erase vector elements cleanly in this case. long N = static_cast(m_data.size()); size_t newSize = static_cast(N - number); std::vector > __tmp(newSize); long lastDeleted( number + first - 1 ); long firstDeleted(first); long count(0); { for (long j = 1; j <= N; ++j) { if ( (j - firstDeleted)*(lastDeleted - j) >= 0 ) { ++count; } else { __tmp[j - 1 - count].resize(m_data[j - 1].size()); __tmp[j - 1 - count] = m_data[j - 1]; } } } m_data.clear(); m_data.resize(newSize); { for (size_t j = 0; j < newSize; ++j) { m_data[j].resize(__tmp[j].size()); m_data[j] = __tmp[j]; } } } template void ColumnVectorData::setDataLimits (T* limits) { m_minLegalValue = limits[0]; m_maxLegalValue = limits[1]; m_minDataValue = std::max(limits[2],limits[0]); m_maxDataValue = std::min(limits[3],limits[1]); } template void ColumnVectorData::doWrite (T* array, long row, long rowSize, long firstElem, T* nullValue) { int status(0); // internal functioning of write_colnull forbids its use for writing // variable width columns. If a nullvalue argument was supplied it will // be ignored. if ( !varLength()) { if (fits_write_colnull(fitsPointer(),type(),index(),row, firstElem, rowSize, array, nullValue,&status)) throw FitsError(status); } else { if (fits_write_col(fitsPointer(),abs(type()),index(),row,firstElem,rowSize, array,&status)) throw FitsError(status); } } // Additional Declarations // all functions that operate on complex data that call cfitsio // need to be specialized. The signature containing complex* objects // is unfortunate, perhaps, for this purpose, but the user will access // rw operations through standard library containers. #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT template <> inline void ColumnVectorData >::setDataLimits (complex* limits) { m_minLegalValue = limits[0]; m_maxLegalValue = limits[1]; m_minDataValue = limits[2]; m_maxDataValue = limits[3]; } #else template <> void ColumnVectorData >::setDataLimits (complex* limits); #endif #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT template <> inline void ColumnVectorData >::setDataLimits (complex* limits) { m_minLegalValue = limits[0]; m_maxLegalValue = limits[1]; m_minDataValue = limits[2]; m_maxDataValue = limits[3]; } #else template <> void ColumnVectorData >::setDataLimits (complex* limits); #endif #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT template <> inline void ColumnVectorData >::readColumnData(long firstRow, long nelements, long firstElem, std::complex* null ) { int status=0; float nulval (0); FITSUtil::auto_array_ptr pArray(new float[2*nelements]); float* array = pArray.get(); int anynul(0); if (fits_read_col_cmp(fitsPointer(),index(),firstRow, firstElem, nelements,nulval,array,&anynul,&status) ) throw FitsError(status); if (m_data.size() != static_cast(rows())) m_data.resize(rows()); std::valarray > readData(nelements); for (long j = 0; j < nelements; ++j) { readData[j] = std::complex(array[2*j],array[2*j+1]); } size_t countRead = 0; const size_t ONE = 1; if (m_data.size() != static_cast(rows())) m_data.resize(rows()); size_t vectorSize(0); if (!varLength()) { vectorSize = std::max(repeat(),ONE); // safety check. } else { // assume that the user specified the correct length for // variable columns. This should be ok since readVariableColumns // uses fits_read_descripts to return this information from the // fits pointer, and this is passed as nelements here. vectorSize = nelements; } size_t n = nelements; int i = firstRow; int ii = i - 1; while ( countRead < n) { std::valarray >& current = m_data[ii]; if (current.size() != vectorSize) current.resize(vectorSize,0.); int elementsInFirstRow = vectorSize-firstElem + 1; bool lastRow = ( (nelements - countRead) < vectorSize); if (lastRow) { int elementsInLastRow = nelements - countRead; std::copy(&readData[countRead],&readData[0]+nelements,¤t[0]); countRead += elementsInLastRow; } // what to do with complete rows. if firstElem == 1 the else { if (firstElem == 1 || (firstElem > 1 && i > firstRow) ) { current = readData[std::slice(vectorSize*(ii-firstRow)+ elementsInFirstRow,vectorSize,1)]; ++ii; ++i; countRead += vectorSize; } else { if (i == firstRow) { std::copy(&readData[0],&readData[0]+elementsInFirstRow, ¤t[firstElem]); countRead += elementsInFirstRow; ++i; ++ii; } } } } } #else template <> void ColumnVectorData >::readColumnData(long firstRow, long nelements, long firstElem, complex* null); #endif #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT template <> inline void ColumnVectorData >::readColumnData (long firstRow, long nelements,long firstElem, complex* nullValue) { // duplicated for each complex type to work around imagined or // actual compiler deficiencies. int status=0; double nulval (0); FITSUtil::auto_array_ptr pArray(new double[2*nelements]); double* array = pArray.get(); int anynul(0); if (fits_read_col_dblcmp(fitsPointer(),index(),firstRow, firstElem, nelements,nulval,array,&anynul,&status) ) throw FitsError(status); if (m_data.size() != static_cast(rows())) m_data.resize(rows()); std::valarray > readData(nelements); for (long j = 0; j < nelements; ++j) { readData[j] = std::complex(array[2*j],array[2*j+1]); } size_t countRead = 0; const size_t ONE = 1; if (m_data.size() != static_cast(rows())) m_data.resize(rows()); size_t vectorSize(0); if (!varLength()) { vectorSize = std::max(repeat(),ONE); // safety check. } else { // assume that the user specified the correct length for // variable columns. This should be ok since readVariableColumns // uses fits_read_descripts to return this information from the // fits pointer, and this is passed as nelements here. vectorSize = nelements; } size_t n = nelements; int i = firstRow; int ii = i - 1; while ( countRead < n) { std::valarray >& current = m_data[ii]; if (current.size() != vectorSize) current.resize(vectorSize,0.); int elementsInFirstRow = vectorSize-firstElem + 1; bool lastRow = ( (nelements - countRead) < vectorSize); if (lastRow) { int elementsInLastRow = nelements - countRead; std::copy(&readData[countRead],&readData[0]+nelements,¤t[0]); countRead += elementsInLastRow; } // what to do with complete rows. if firstElem == 1 the else { if (firstElem == 1 || (firstElem > 1 && i > firstRow) ) { current = readData[std::slice(vectorSize*(ii-firstRow)+ elementsInFirstRow,vectorSize,1)]; ++ii; ++i; countRead += vectorSize; } else { if (i == firstRow) { std::copy(&readData[0],&readData[0]+elementsInFirstRow, ¤t[firstElem]); countRead += elementsInFirstRow; ++i; ++ii; } } } } } #else template <> void ColumnVectorData >::readColumnData (long firstRow, long nelements, long firstElem, complex* null); #endif #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT template <> inline void ColumnVectorData >::writeFixedArray (complex* data, long nElements, long nRows, long firstRow, complex* nullValue) { int status(0); // check for sanity of inputs, then write to file. // this function writes only complete rows to a table with // fixed width rows. if ( nElements < nRows*static_cast(repeat()) ) { #ifdef SSTREAM_DEFECT std::ostrstream msgStr; #else std::ostringstream msgStr; #endif msgStr << " input array size: " << nElements << " required " << nRows*repeat(); #ifdef SSTREAM_DEFECT msgStr << std::ends; #endif String msg(msgStr.str()); throw Column::InsufficientElements(msg); } FITSUtil::auto_array_ptr realData(new float[2*nElements]); for (int j = 0; j < nElements; ++j) { realData[2*j] = data[j].real(); realData[2*j+1] = data[j].imag(); } if (fits_write_col_cmp(fitsPointer(),index(),firstRow, 1,nElements,realData.get(),&status)) throw FitsError(status); parent()->updateRows(); } #else template <> void ColumnVectorData >::writeFixedArray (complex* data, long nElements, long nRows, long firstRow, std::complex* null); #endif #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT template <> inline void ColumnVectorData >::writeFixedArray (complex* data, long nElements, long nRows, long firstRow, complex* nullValue) { int status(0); // check for sanity of inputs, then write to file. // this function writes only complete rows to a table with // fixed width rows. if ( nElements < nRows*static_cast(repeat()) ) { #ifdef SSTREAM_DEFECT std::ostrstream msgStr; #else std::ostringstream msgStr; #endif msgStr << " input array size: " << nElements << " required " << nRows*repeat(); #ifdef SSTREAM_DEFECT msgStr << std::ends; #endif String msg(msgStr.str()); throw Column::InsufficientElements(msg); } FITSUtil::auto_array_ptr realData(new double[2*nElements]); for (int j = 0; j < nElements; ++j) { realData[2*j] = data[j].real(); realData[2*j+1] = data[j].imag(); } if (fits_write_col_dblcmp(fitsPointer(),index(),firstRow, 1,nElements,realData.get(),&status)) throw FitsError(status); parent()->updateRows(); } #else template <> void ColumnVectorData >::writeFixedArray (complex* data, long nElements, long nRows, long firstRow, std::complex* null); #endif #ifdef SPEC_TEMPLATE_DECL_DEFECT template <> inline void ColumnVectorData >::doWrite (std::complex* data, long row, long rowSize, long firstElem, std::complex* nullValue ) { int status(0); FITSUtil::auto_array_ptr carray( new float[2*rowSize]); for ( long j = 0 ; j < rowSize; ++ j) { carray[2*j] = data[j].real(); carray[2*j + 1] = data[j].imag(); } if (fits_write_col_cmp(fitsPointer(),index(),row,firstElem,rowSize, carray.get(),&status)) throw FitsError(status); } template <> inline void ColumnVectorData >::doWrite (std::complex* data, long row, long rowSize, long firstElem, std::complex* nullValue ) { int status(0); FITSUtil::auto_array_ptr carray( new double[2*rowSize]); for ( long j = 0 ; j < rowSize; ++ j) { carray[2*j] = data[j].real(); carray[2*j + 1] = data[j].imag(); } if (fits_write_col_dblcmp(fitsPointer(),index(),row,firstElem,rowSize, carray.get(),&status)) throw FitsError(status); } #else template<> void ColumnVectorData >::doWrite ( complex* data, long row, long rowSize, long firstElem, complex* nullValue); template<> void ColumnVectorData >::doWrite ( complex* data, long row, long rowSize, long firstElem, complex* nullValue ); #endif } // namespace CCfits #endif CCfits/ExtHDU.h0000644000225700000360000005364511470265345013015 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef EXTHDU_H #define EXTHDU_H 1 // CCfitsHeader #include "CCfits.h" // HDU #include "HDU.h" // FitsError #include "FitsError.h" namespace CCfits { class Column; } // namespace CCfits namespace CCfits { /*! \class ExtHDU::WrongExtensionType @ingroup FITSexcept @brief Exception to be thrown on unmatched extension types This exception is to be thrown if the user requested a particular extension and it does not correspond to the expected type. */ /*! \fn ExtHDU::WrongExtensionType::WrongExtensionType (const String& msg, bool silent); \brief Exception ctor, prefixes the string "Fits Error: wrong extension type" before the specific message. \param msg A specific diagnostic message \param silent if true, print message whether FITS::verboseMode is set or not. */ /*! \class ExtHDU \brief base class for all FITS extension HDUs, i.e. Image Extensions and Tables. ExtHDU needs to have the combined public interface of Table objects and images. It achieves this by providing the same set of read and write operations as PHDU, and also providing the same operations for extracting columns from the extension as does Table [after which the column interface is accessible]. Differentiation between extension types operates by exception handling: .i.e. attempting to access image data structures on a Table object through the ExtHDU interface will or trying to return a Column reference from an Image extension will both throw an exception */ /*! \fn ExtHDU::ExtHDU(const ExtHDU &right); \brief copy constructor */ /*! \fn virtual ExtHDU::~ExtHDU(); \brief destructor */ /*! \fn static void ExtHDU::readHduName (const fitsfile* fptr, int hduIndex, String& hduName, int& hduVersion); \brief read extension name. Used primarily to allow extensions to be specified by HDU number and provide their name for the associative array that contains them. Alternatively, if there is no name keyword in the extension, one is synthesized from the index. */ /*! \fn virtual void ExtHDU::readData (bool readFlag = false, const std::vector& keys = std::vector()) = 0; \brief read data from HDU depending on readFlag and keys. */ /*! \fn const String& ExtHDU::name () const; \brief return the name of the extension. */ /*! \fn virtual ExtHDU * ExtHDU::clone (FITSBase* p) const = 0; \brief virtual copy constructor */ /*! \fn virtual Column& ExtHDU::column (const String& colName, bool caseSensitive = true) const ; \brief return a reference to a Table column specified by name. If the caseSensitive parameter is set to false, the search will be case-insensitive. The overridden base class implementation ExtHDU::column throws an exception, which is thus the action to be taken if self is an image extension \exception WrongExtensionType see above */ /*! \fn virtual Column& ExtHDU::column (int colIndex) const; \brief return a reference to a Table column specified by column index. This version is provided for convenience; the 'return by name' version is more efficient because columns are stored in an associative array sorted by name. \exception WrongExtensionType thrown if *this is an image extension. */ /*! \fn const map& ExtHDU::column () const; \brief return a reference to the array containing the columns. \exception WrongExtensionType thrown if *this is an image extension. */ /*! \fn int ExtHDU::numCols () const; \brief return the number of Columns in the Table (the TFIELDS keyword). \exception WrongExtensionType thrown if *this is an image extension. */ /*! \fn const int ExtHDU::version () const; \brief return the extension version number. */ /*! \fn void ExtHDU::version (int value); \brief set the extension version number */ /*! \fn long ExtHDU::rows () const; \brief return the number of rows in the extension. \exception WrongExtensionType thrown if *this is an image extension. */ /*! \fn ExtHDU::ExtHDU (FITSBase* p, HduType xtype, const String &hduName, int version); \brief default constructor, required as Standard Library Container content. */ /*! \fn ExtHDU::ExtHDU (FITSBase* p, HduType xtype, const String &hduName, int bitpix, int naxis, const std::vector& axes, int version); \brief writing constructor. The writing constructor forces the user to supply a name for the HDU. The bitpix, naxes and naxis data required by this constructor are required FITS keywords for any HDUs. */ /*! \fn ExtHDU::ExtHDU (FITSBase* p, HduType xtype, int number); \brief ExtHDU constructor for getting ExtHDUs by number. Necessary since EXTNAME is a reserved, not required, keyword. But a synthetic name is supplied by static ExtHDU::readHduName which is called by this constructor. */ /*! \fn virtual void ExtHDU::addColumn (ValueType type, const String& columnName, long repeatWidth, const String& colUnit = String(""), long decimals = -1, size_t columnNumber = 0); \brief add a new column to an existing table HDU. \param type The data type of the column to be added \param columnName The name of the column to be added \param repeatWidth for a string valued, this is the width of a string. For a numeric column it supplies the vector length of the rows. It is ignored for ascii table numeric data. \param colUnit an optional field specifying the units of the data (TUNITn) \param decimals optional parameter specifying the number of decimals for an ascii numeric column \param columnNumber optional parameter specifying column number to be created. If not specified the column is added to the end. If specified, the column is inserted and the columns already read are reindexed. This parameter is provided as a convenience to support existing code rather than recommended. */ /*! \fn virtual void ExtHDU::deleteColumn(const String& columnName); \brief delete a column in a Table extension by name. \param columnName The name of the column to be deleted. \exception WrongExtensionType if extension is an image. */ /*! \fn template void ExtHDU::read (std::valarray& image); \brief Read image data into container. The container image contains the entire image array after the call. This and all the other variants of read() throw a WrongExtensionType exception if called for a Table object. */ /*! \fn template void ExtHDU::read (std::valarray& image, long first, long nElements, S* nullValue) ; \brief read part of an image array, processing null values. Implicit data conversion is supported (i.e. user does not need to know the type of the data stored. A WrongExtensionType extension is thrown if *this is not an image. \param image The receiving container, a std::valarray reference \param first The first pixel from the array to read [a long value] \param nElements The number of values to read \param nullValue A pointer containing the value in the table to be considered as undefined. See cfitsio for details */ /*! \fn template void ExtHDU::read (std::valarray& image, const std::vector& first, long nElements, S* nullValue) ; \brief read part of an image array, processing null values. As above except for \param first a vector representing an n-tuple giving the coordinates in the image of the first pixel. */ /*! \fn template void ExtHDU::read (std::valarray& image, const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, S* nullValue) ; \brief read an image subset into valarray image, processing null values The image subset is defined by two vertices and a stride indicating the 'denseness' of the values to be picked in each dimension (a stride = (1,1,1,...) means picking every pixel in every dimension, whereas stride = (2,2,2,...) means picking every other value in each dimension. */ /*! \fn template void ExtHDU::read (std::valarray& image, long first, long nElements) ; \brief read an image section starting at a specified pixel */ /*! \fn template void ExtHDU::read (std::valarray& image, const std::vector& first, long nElements); \brief read an image section starting at a location specified by an n-tuple */ /*! \fn template void ExtHDU::read (std::valarray& image, const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride) ; \brief read an image subset */ /*! \fn template void ExtHDU::write(const std::vector& first, long nElements, const std::valarray& data, S* nullValue); \brief Write a set of pixels to an image extension with the first pixel specified by an n-tuple, processing undefined data All the overloaded versions of ExtHDU::write perform operations on *this if it is an image and throw a WrongExtensionType exception if not. Where appropriate, alternate versions allow undefined data to be processed \param first an n-tuple of dimension equal to the image dimension specifying the first pixel in the range to be written \param nElements number of pixels to be written \param data array of data to be written \param nullValue pointer to null value (data with this value written as undefined; needs the BLANK keyword to have been specified). */ /*! \fn template void ExtHDU::write(long first, long nElements, const std::valarray& data, S* nullValue); \brief write array to image starting with a specified pixel and allowing undefined data to be processed parameters after the first are as for version with n-tuple specifying first element. these two version are equivalent, except that it is possible for the first pixel number to exceed the range of 32-bit integers, which is how long datatype is commonly implemented. */ /*! \fn template void ExtHDU::write(const std::vector& first, long nElements, const std::valarray& data); \brief write array starting from specified n-tuple, without undefined data processing */ /*! \fn template void ExtHDU::write(long first, long nElements, const std::valarray& data); \brief write array starting from specified pixel number, without undefined data processing */ /*! \fn template void ExtHDU::write(const std::vector& firstVertex, const std::vector& lastVertex, const std::valarray& data); \brief write a subset (generalize slice) of data to the image A generalized slice/subset is a subset of the image (e.g. one plane of a data cube of size <= the dimension of the cube). It is specified by two opposite vertices. The equivalent cfitsio call does not support undefined data processing so there is no version that allows a null value to be specified. \param firstVertex the coordinates specifying lower and upper vertices of the n-dimensional slice \param lastVertex \param data The data to be written */ /*! \fn const long ExtHDU::pcount () const; \brief return required pcount keyword value */ /*! \fn void ExtHDU::pcount (long value); \brief set required pcount keyword value */ /*! \fn const long ExtHDU::gcount () const; \brief return required gcount keyword value */ /*! \fn void ExtHDU::gcount (long value); \brief set required gcount keyword value */ /*! \fn const HduType ExtHDU::xtension () const; \brief return the extension type allowed values are ImageHDU, AsciiTbl, and BinaryTbl */ /*! \fn void ExtHDU::xtension (HduType value); \brief set the extension type */ /*! \fn void ExtHDU::checkXtension (); \brief check that the extension type read is what was expected. */ /*! \fn virtual long ExtHDU::getRowsize () const; \brief return the optimal number of rows to read or write at a time A wrapper for the CFITSIO function fits_get_rowsize, useful for obtaining maximum I/O efficiency. This will throw if it is not called for a Table extension. */ /*! \fn bool ExtHDU::isCompressed () const; \brief return true if image is stored using compression. This is simply a wrapper around the CFITSIO fits_is_compressed_image function. It will throw if this is not an Image extension. */ class ExtHDU : public HDU //## Inherits: %38048213E7A8 { public: class WrongExtensionType : public FitsException //## Inherits: %39E61E630349 { public: WrongExtensionType (const String& msg, bool silent = true); protected: private: private: //## implementation }; ExtHDU(const ExtHDU &right); virtual ~ExtHDU(); friend bool operator<(const ExtHDU &left,const ExtHDU &right); friend bool operator>(const ExtHDU &left,const ExtHDU &right); friend bool operator<=(const ExtHDU &left,const ExtHDU &right); friend bool operator>=(const ExtHDU &left,const ExtHDU &right); static void readHduName (const fitsfile* fptr, int hduIndex, String& hduName, int& hduVersion); virtual void readData (bool readFlag = false, const std::vector& keys = std::vector()) = 0; const String& name () const; virtual HDU * clone (FITSBase* p) const = 0; // By all means necessary, set the fitsfile pointer so that // this HDU is the current HDU. // // This would appear to be a good candidate for the public // interface. virtual void makeThisCurrent () const; virtual Column& column (const String& colName, bool caseSensitive = true) const; virtual Column& column (int colIndex) const; virtual long rows () const; virtual void addColumn (ValueType type, const String& columnName, long repeatWidth, const String& colUnit = String(""), long decimals = -1, size_t columnNumber = 0); virtual void deleteColumn (const String& columnName); virtual long getRowsize () const; virtual int numCols () const; virtual const std::map& column () const; bool isCompressed () const; int version () const; void version (int value); static const String& missHDU (); static void setMissHDU (const String& value); public: // Additional Public Declarations // interface is virtually identical to PHDU. The implementation is // similar apart from a check for wrong extension type. template void write(const std::vector& first, long nElements, const std::valarray& data, S* nullValue); template void write(long first, long nElements, const std::valarray& data, S* nullValue); template void write(const std::vector& first, long nElements, const std::valarray& data); template void write(long first, long nElements, const std::valarray& data); template void write(const std::vector& firstVertex, const std::vector& lastVertex, const std::valarray& data); // read image data & return the array. Can't return a reference because type // conversion in general requires allocating a new object. // note semantics of reading column data are easily distinguished: they require // the user to perform the operation EXT.column({name,index}).read(...) template void read (std::valarray& image) ; template void read (std::valarray& image, long first, long nElements, S* nullValue) ; template void read (std::valarray& image, const std::vector& first, long nElements, S* nullValue) ; template void read (std::valarray& image, const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride) ; template void read (std::valarray& image, long first, long nElements) ; template void read (std::valarray& image, const std::vector& first, long nElements) ; template void read (std::valarray& image, const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, S* nullValue) ; protected: // ExtHDU needs a default constructor. This is it. ExtHDU (FITSBase* p, HduType xtype, const String &hduName, int version); // The writing constructor. Forces the user to supply a name // for the HDU ExtHDU (FITSBase* p, HduType xtype, const String &hduName, int bitpix, int naxis, const std::vector& axes, int version); // ExtHDU constructor for getting ExtHDUs by number. // Necessary since EXTNAME is a reserved not required // keyword. ExtHDU (FITSBase* p, HduType xtype, int number); virtual std::ostream & put (std::ostream &s) const = 0; virtual void setColumn (const String& colname, Column* value); virtual void checkExtensionType () const; int getVersion (); long pcount () const; void pcount (long value); long gcount () const; void gcount (long value); HduType xtension () const; void xtension (HduType value); // Additional Protected Declarations private: virtual void initRead () = 0; void checkXtension (); // Additional Private Declarations private: //## implementation // Data Members for Class Attributes long m_pcount; long m_gcount; int m_version; HduType m_xtension; static String s_missHDU; // Data Members for Associations String m_name; // Additional Implementation Declarations }; // Class CCfits::ExtHDU::WrongExtensionType // Class CCfits::ExtHDU inline bool operator<(const ExtHDU &left,const ExtHDU &right) { if (left.m_name < right.m_name) return true; if (left.m_name > right.m_name) return false; if (left.m_name == right.m_name) { if (left.m_version < right.m_version) return true; } return false; } inline bool operator>(const ExtHDU &left,const ExtHDU &right) { return !operator<=(left,right); } inline bool operator<=(const ExtHDU &left,const ExtHDU &right) { if (left.m_name <= right.m_name) { if (left.m_version <= right.m_version) return true; } return false; } inline bool operator>=(const ExtHDU &left,const ExtHDU &right) { return !operator<(left,right); } inline const String& ExtHDU::name () const { return m_name; } inline long ExtHDU::pcount () const { return m_pcount; } inline void ExtHDU::pcount (long value) { m_pcount = value; } inline long ExtHDU::gcount () const { return m_gcount; } inline void ExtHDU::gcount (long value) { m_gcount = value; } inline int ExtHDU::version () const { return m_version; } inline void ExtHDU::version (int value) { m_version = value; } inline HduType ExtHDU::xtension () const { return m_xtension; } inline void ExtHDU::xtension (HduType value) { m_xtension = value; } inline const String& ExtHDU::missHDU () { return s_missHDU; } inline void ExtHDU::setMissHDU (const String& value) { s_missHDU = value; } } // namespace CCfits #endif CCfits/ExtHDUT.h0000644000225700000360000006755611666221067013147 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef EXTHDUT_H #define EXTHDUT_H #include "ImageExt.h" #include "Table.h" #include "Column.h" namespace CCfits { template void ExtHDU::read (std::valarray& image) { makeThisCurrent(); long init(1); long nElements(std::accumulate(naxes().begin(),naxes().end(),init, std::multiplies())); read(image,1,nElements,static_cast(0)); } template void ExtHDU::read (std::valarray& image, long first,long nElements) { makeThisCurrent(); read(image, first,nElements,static_cast(0)); } template void ExtHDU::read (std::valarray& image, long first, long nElements, S* nulValue) { makeThisCurrent(); if ( ImageExt* extimage = dynamic_cast*>(this)) { // proceed if cast is successful. const std::valarray& __tmp = extimage->readImage(first,nElements,nulValue); image.resize(__tmp.size()); image = __tmp; } else { if (bitpix() == Ifloat) { ImageExt& extimage = dynamic_cast&>(*this); float nulVal(0); if (nulValue) nulVal = static_cast(*nulValue); FITSUtil::fill(image, extimage.readImage(first,nElements,&nulVal)); } else if (bitpix() == Idouble) { ImageExt& extimage = dynamic_cast&>(*this); double nulVal(0); if (nulValue) nulVal = static_cast(*nulValue); FITSUtil::fill(image, extimage.readImage(first,nElements,&nulVal)); } else if (bitpix() == Ibyte) { ImageExt& extimage = dynamic_cast&>(*this); unsigned char nulVal(0); if (nulValue) nulVal = static_cast(*nulValue); FITSUtil::fill(image, extimage.readImage(first,nElements,&nulVal)); } else if (bitpix() == Ilong) { if ( zero() == ULBASE && scale() == 1) { ImageExt& extimage = dynamic_cast&>(*this); unsigned INT32BIT nulVal(0); if (nulValue) nulVal = static_cast(*nulValue); FITSUtil::fill(image, extimage.readImage(first,nElements,&nulVal)); } else { ImageExt& extimage = dynamic_cast&>(*this); INT32BIT nulVal(0); if (nulValue) nulVal = static_cast(*nulValue); FITSUtil::fill(image, extimage.readImage(first,nElements,&nulVal)); } } else if (bitpix() == Ishort) { if ( zero() == USBASE && scale() == 1) { ImageExt& extimage = dynamic_cast&>(*this); unsigned short nulVal(0); if (nulValue) nulVal = static_cast(*nulValue); FITSUtil::fill(image, extimage.readImage(first,nElements,&nulVal)); } else { ImageExt& extimage = dynamic_cast&>(*this); short nulVal(0); if (nulValue) nulVal = static_cast(*nulValue); FITSUtil::fill(image, extimage.readImage(first,nElements,&nulVal)); } } else { throw CCfits::FitsFatal(" casting image types "); } } } template void ExtHDU::read (std::valarray& image, const std::vector& first, long nElements, S* nulValue) { makeThisCurrent(); long firstElement(0); long dimSize(1); std::vector inputDimensions(naxis(),1); size_t sNaxis = static_cast(naxis()); size_t n(std::min(sNaxis,first.size())); std::copy(&first[0],&first[0]+n,&inputDimensions[0]); for (long i = 0; i < naxis(); ++i) { firstElement += ((inputDimensions[i] - 1)*dimSize); dimSize *=naxes(i); } ++firstElement; read(image, firstElement,nElements,nulValue); } template void ExtHDU::read (std::valarray& image, const std::vector& first, long nElements) { makeThisCurrent(); read(image, first,nElements,static_cast(0)); } template void ExtHDU::read (std::valarray& image, const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, S* nulValue) { makeThisCurrent(); if (ImageExt* extimage = dynamic_cast*>(this)) { const std::valarray& __tmp = extimage->readImage(firstVertex,lastVertex,stride,nulValue); image.resize(__tmp.size()); image = __tmp; } else { // FITSutil::fill will take care of sizing. if (bitpix() == Ifloat) { float nulVal(0); if (nulValue) nulVal = static_cast(*nulValue); ImageExt& extimage = dynamic_cast&>(*this); FITSUtil::fill(image, extimage.readImage(firstVertex,lastVertex,stride,&nulVal)); } else if (bitpix() == Idouble) { ImageExt& extimage = dynamic_cast&>(*this); double nulVal(0); if (nulValue) nulVal = static_cast(*nulValue); FITSUtil::fill(image, extimage.readImage(firstVertex,lastVertex,stride,&nulVal)); } else if (bitpix() == Ibyte) { ImageExt& extimage = dynamic_cast&>(*this); unsigned char nulVal(0); if (nulValue) nulVal = static_cast(*nulValue); FITSUtil::fill(image, extimage.readImage(firstVertex,lastVertex,stride,&nulVal)); } else if (bitpix() == Ilong) { if ( zero() == ULBASE && scale() == 1) { ImageExt& extimage = dynamic_cast&>(*this); unsigned INT32BIT nulVal(0); if (nulValue) nulVal = static_cast(*nulValue); FITSUtil::fill(image, extimage.readImage(firstVertex,lastVertex,stride,&nulVal)); } else { ImageExt& extimage = dynamic_cast&>(*this); INT32BIT nulVal(0); if (nulValue) nulVal = static_cast(*nulValue); FITSUtil::fill(image, extimage.readImage(firstVertex,lastVertex,stride,&nulVal)); } } else if (bitpix() == Ishort) { if ( zero() == USBASE && scale() == 1) { ImageExt& extimage = dynamic_cast&>(*this); unsigned short nulVal(0); if (nulValue) nulVal = static_cast(*nulValue); FITSUtil::fill(image, extimage.readImage(firstVertex,lastVertex,stride,&nulVal)); } else { ImageExt& extimage = dynamic_cast&>(*this); short nulVal(0); if (nulValue) nulVal = static_cast(*nulValue); FITSUtil::fill(image, extimage.readImage(firstVertex,lastVertex,stride,&nulVal)); } } else { throw CCfits::FitsFatal(" casting image types "); } } } template void ExtHDU::read (std::valarray& image, const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride) { makeThisCurrent(); read(image, firstVertex,lastVertex,stride,static_cast(0)); } template void ExtHDU::write(long first,long nElements,const std::valarray& data,S* nulValue) { // throw if we called image read/write operations on a table. makeThisCurrent(); if (ImageExt* extimage = dynamic_cast*>(this)) { extimage->writeImage(first,nElements,data,nulValue); } else { if (bitpix() == Ifloat) { std::valarray __tmp; ImageExt& imageExt = dynamic_cast&>(*this); FITSUtil::fill(__tmp,data); float* pfNullValue = 0; float fNullValue = 0.0; if (nulValue) { fNullValue = static_cast(*nulValue); pfNullValue = &fNullValue; } imageExt.writeImage(first,nElements,__tmp, pfNullValue); } else if (bitpix() == Idouble) { std::valarray __tmp; ImageExt& imageExt = dynamic_cast&>(*this); FITSUtil::fill(__tmp,data); double* pdNullValue = 0; double dNullValue = 0.0; if (nulValue) { dNullValue = static_cast(*nulValue); pdNullValue = &dNullValue; } imageExt.writeImage(first,nElements,__tmp,pdNullValue); } else if (bitpix() == Ibyte) { ImageExt& imageExt = dynamic_cast&>(*this); std::valarray __tmp; FITSUtil::fill(__tmp,data); unsigned char *pbNull=0; unsigned char bNull=0; if (nulValue) { bNull = static_cast(*nulValue); pbNull = &bNull; } imageExt.writeImage(first,nElements,__tmp, pbNull); } else if (bitpix() == Ilong) { if ( zero() == ULBASE && scale() == 1) { ImageExt& imageExt = dynamic_cast&>(*this); std::valarray __tmp; FITSUtil::fill(__tmp,data); unsigned INT32BIT *plNull=0; unsigned INT32BIT lNull=0; if (nulValue) { lNull = static_cast(*nulValue); plNull = &lNull; } imageExt.writeImage(first,nElements,__tmp,plNull); } else { ImageExt& imageExt = dynamic_cast&>(*this); std::valarray __tmp; FITSUtil::fill(__tmp,data); INT32BIT *plNull=0; INT32BIT lNull=0; if (nulValue) { lNull = static_cast(*nulValue); plNull = &lNull; } imageExt.writeImage(first,nElements,__tmp,plNull); } } else if (bitpix() == Ishort) { if ( zero() == USBASE && scale() == 1) { ImageExt& imageExt = dynamic_cast&>(*this); std::valarray __tmp; FITSUtil::fill(__tmp,data); unsigned short *psNull=0; unsigned short sNull=0; if (nulValue) { sNull = static_cast(*nulValue); psNull = &sNull; } imageExt.writeImage(first,nElements,__tmp,psNull); } else { ImageExt& imageExt = dynamic_cast&>(*this); std::valarray __tmp; FITSUtil::fill(__tmp,data); short *psNull=0; short sNull=0; if (nulValue) { sNull = static_cast(*nulValue); psNull = &sNull; } imageExt.writeImage(first,nElements,__tmp,psNull); } } else { FITSUtil::MatchType errType; throw FITSUtil::UnrecognizedType(FITSUtil::FITSType2String(errType())); } } } template void ExtHDU::write(long first, long nElements,const std::valarray& data) { write(first, nElements, data, static_cast(0)); } template void ExtHDU::write(const std::vector& first, long nElements, const std::valarray& data, S* nulValue) { // throw if we called image read/write operations on a table. makeThisCurrent(); size_t n(first.size()); long firstElement(0); long dimSize(1); for (long i = 0; i < first.size(); ++i) { firstElement += ((first[i] - 1)*dimSize); dimSize *=naxes(i); } ++firstElement; write(firstElement,nElements,data,nulValue); } template void ExtHDU::write(const std::vector& first, long nElements, const std::valarray& data) { // throw if we called image read/write operations on a table. makeThisCurrent(); size_t n(first.size()); long firstElement(0); long dimSize(1); for (long i = 0; i < first.size(); ++i) { firstElement += ((first[i] - 1)*dimSize); dimSize *=naxes(i); } ++firstElement; write(firstElement,nElements,data); } template void ExtHDU::write(const std::vector& firstVertex, const std::vector& lastVertex, const std::valarray& data) { makeThisCurrent(); if (ImageExt* extimage = dynamic_cast*>(this)) { extimage->writeImage(firstVertex,lastVertex,data); } else { // write input type S to Image type... if (bitpix() == Ifloat) { ImageExt& extimage = dynamic_cast&>(*this); size_t n(data.size()); std::valarray __tmp(n); for (size_t j= 0; j < n; ++j) __tmp[j] = data[j]; extimage.writeImage(firstVertex,lastVertex,__tmp); } else if (bitpix() == Idouble) { ImageExt& extimage = dynamic_cast&>(*this); size_t n(data.size()); std::valarray __tmp(n); for (size_t j= 0; j < n; ++j) __tmp[j] = data[j]; extimage.writeImage(firstVertex,lastVertex,__tmp); } else if (bitpix() == Ibyte) { ImageExt& extimage = dynamic_cast&>(*this); size_t n(data.size()); std::valarray __tmp(n); for (size_t j= 0; j < n; ++j) __tmp[j] = data[j]; extimage.writeImage(firstVertex,lastVertex,__tmp); } else if (bitpix() == Ilong) { if ( zero() == ULBASE && scale() == 1) { ImageExt& extimage = dynamic_cast&>(*this); size_t n(data.size()); std::valarray __tmp(n); for (size_t j= 0; j < n; ++j) __tmp[j] = data[j]; extimage.writeImage(firstVertex,lastVertex,__tmp); } else { ImageExt& extimage = dynamic_cast&>(*this); size_t n(data.size()); std::valarray __tmp(n); for (size_t j= 0; j < n; ++j) __tmp[j] = data[j]; extimage.writeImage(firstVertex,lastVertex,__tmp); } } else if (bitpix() == Ishort) { if ( zero() == USBASE && scale() == 1) { ImageExt& extimage = dynamic_cast&>(*this); size_t n(data.size()); std::valarray __tmp(n); for (size_t j= 0; j < n; ++j) __tmp[j] = data[j]; extimage.writeImage(firstVertex,lastVertex,__tmp); } else { ImageExt& extimage = dynamic_cast&>(*this); size_t n(data.size()); std::valarray __tmp(n); for (size_t j= 0; j < n; ++j) __tmp[j] = data[j]; extimage.writeImage(firstVertex,lastVertex,__tmp); } } else { FITSUtil::MatchType errType; throw FITSUtil::UnrecognizedType(FITSUtil::FITSType2String(errType())); } } } } //namespace CCfits #endif CCfits/FITS.h0000644000225700000360000011146411470271304012443 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef FITS_H #define FITS_H 1 // exception #include // string #include // map #include // ExtHDU #include "ExtHDU.h" // HDUCreator #include "HDUCreator.h" // FitsError #include "FitsError.h" namespace CCfits { class FITSBase; class PHDU; class Table; } // namespace CCfits //class PHDU; extern "C" { # include } #include namespace CCfits { /*! \class FITS \brief Memory object representation of a disk FITS file Constructors are provided to get FITS data from an existing file or to create new FITS data sets. Overloaded versions allow the user to a) read from one or more specified extensions, specified by EXTNAME and VERSION or by HDU number. b either just header information or data on construction c) to specify scalar keyword values to be read on construction d) to open and read an extension that has specified keyword values e) create a new FITS object and corresponding file, including an empty primary header. The memory fits object as constructed is always an image of a valid FITS object, i.e. a primary HDU is created on construction. calling the destructor closes the disk file, so that FITS files are automatically deleted at the end of scope unless other arrangements are made. */ /*! @defgroup FITSexcept FITS Exceptions */ /*! \class FITS::NoSuchHDU @ingroup FITSexcept @brief exception thrown by HDU retrieval methods. */ /*! \fn FITS::NoSuchHDU::NoSuchHDU(const String& diag, bool silent) \brief Exception ctor, prefixes the string "FITS Error: Cannot read HDU in FITS file:" before the specific message. \param diag A specific diagnostic message, usually the name of the extension whose read was attempted. \param silent if true, print message whether FITS::verboseMode is set or not. */ /*! \class FITS::CantOpen @ingroup FITSexcept @brief thrown on failure to open existing file */ /*! \fn FITS::CantOpen::CantOpen(const String& diag, bool silent) \brief Exception ctor prefixes the string: "FITS Error: Cannot create file " before specific message This exception will be thrown if users attempt to open an existing file for write access to which they do not have permission, or of course if the file does not exist. \param diag A specific diagnostic message, the name of the file that was to be created. \param silent if true, print message whether FITS::verboseMode is set or not. */ /*! \class FITS::CantCreate @ingroup FITSexcept @brief thrown on failure to create new file */ /*! \fn FITS::CantCreate::CantCreate(const String& msg, bool silent) \brief Exception ctor prefixes the string: "FITS Error: Cannot create file " before specific message This exception will be thrown if the user attempts to write to a protected directory or attempts to create a new file with the same name as an existing file without specifying overwrite [overwrite is specified by adding the character '!' before the filename, following the cfitsio convention]. \param msg A specific diagnostic message, the name of the file that was to be created. \param silent if true, print message whether FITS::verboseMode is set or not. */ /*! \class FITS::OperationNotSupported @ingroup FITSexcept @brief thrown for unsupported operations, such as attempted to select rows from an image extension. */ /*! \fn FITS::OperationNotSupported::OperationNotSupported(const String& msg, bool silent) \brief Exception ctor, prefixes the string "FITS Error: Operation not supported:" before the specific message. \param msg A specific diagnostic message. \param silent if true, print message whether FITS::verboseMode is set or not. */ /*! \fn FITS::FITS(const FITS &right) \brief copy constructor */ /*! \fn FITS::FITS(const String &name, RWmode mode, bool readDataFlag, const std::vector& primaryKeys) \brief basic constructor This basic constructor makes a FITS object from the given filename. The file name is the only required argument. The file name string is passed directly to the cfitsio library: thus the extended file name syntax described in the cfitsio manual should work as documented. (Though the extended file name feature which allows the opening of a particular image located in the row of a table is currently unsupported.) If the mode is Read [default]: It will read all of the headers in the file, and all of the data if the readDataFlag is supplied as true. It will also read optional primary keys. Upon completion, the the last header in the file will become the current extension. (However if the file name includes extended syntax selecting a particular extension, that extension will be the current one.) If the mode is Write and the file already exists: The file is opened in read-write mode, all of the headers of the file are read, and all of the data if the readDataFlag is supplied as true. It will also read optional primary keys. For backwards compatibility with older versions of CCfits (which only read the primary when in Write mode for pre-existing files), the primary will become the current extension. If the mode is Write and the file does NOT exist (or is overwritten using '!' syntax): A default primary HDU will be created in the file with BITPIX=8 and NAXIS=0. However if you wish to create a new file with image data in the primary, the version of the FITS constructor that specifies the data type and number of axes should be used instead. \param name The name of the FITS file to be read/written \param mode The read/write mode: must be Read or Write \param readDataFlag boolean: read data on construction if true \param primaryKeys Allows optional reading of primary header keys on construction \exception NoSuchHDU thrown on HDU seek error either by index or {name,version} \exception FitsError thrown on non-zero status code from cfitsio when not overriden by FitsException error to produce more illuminating message. */ /*! \fn FITS::FITS (const String &name, RWmode mode, const std::vector& searchKeys, const std::vector &searchValues, bool readDataFlag = false, const std::vector& hduKeys = std::vector(), const std::vector& primaryKey = std::vector(), int version = 1); \brief open fits file and read HDU which contains supplied keywords with [optional] specified values (sometimes one just wants to know that the keyword is present). Optional parameters allows the reading of specified primary HDU keys and specified columns and keywords in the HDU of interest. \param name The name of the FITS file to be read \param mode The read/write mode: must be Read or Write \param searchKeys A string vector of keywords to search for in each header \param searchValues A string vector of values those keywords are required to have for success. Note that the keys must be of type string. If any value does not need to be checked the corresponding searchValue element can be empty. \param readDataFlag boolean: if true, read data if HDU is found \param hduKeys Allows optional reading of keys in the HDU that is searched for if it is successfully found \param primaryKey Allows optional reading of primary header keys on construction \param version Optional version number. If specified, checks the EXTVERS keyword. \exception FitsError thrown on non-zero status code from cfitsio when not overriden by FitsException error to produce more illuminating message. */ /*! \fn FITS::FITS(const String &name, RWmode mode, const string &hduName, bool readDataFlag, const std::vector& hduKeys, const std::vector& primaryKey, int version); \brief Open a FITS file and read a single specified HDU. This and similar constructor variants support reading table data. Optional arguments allow the reading of primary header keys and specified data from hduName, the HDU to be read. An object representing the primary HDU is always created: if it contains an image, that image may be read by subsequent calls. If extended file name syntax is used and selects an extension other than hduName, a FITS::OperationNotSupported exception will be thrown. \param name The name of the FITS file to be read \param mode The read/write mode: takes values Read or Write \param hduName The name of the HDU to be read. \param hduKeys Optional array of keywords to be read from the HDU \param version Optional version number. If not supplied the first HDU with name hduName is read see above for other parameter definitions */ /*! \fn FITS::FITS(const String &name, RWmode mode, const std::vector& hduNames, bool readDataFlag, const std::vector& primaryKey); This is intended as a convenience where the file consists of single versions of HDUs and data only, not keys are to be read. If extended file name syntax is used and selects an extension not listed in hduNames, a FITS::OperationNotSupported exception will be thrown. \param hduNames array of HDU names to be read. see above for other parameter definitions. */ /*! \fn FITS::FITS(const String &name, RWmode mode, const std::vector& hduNames, const std::vector >& hduKeys, bool readDataFlag, const std::vector& primaryKeys, const std::vector& hduVersions); \brief FITS read constructor in full generality. \param hduVersions an optional version number for each HDU to be read \param hduKeys an array of keywords for each HDU to be read. see above for other parameter definitions. */ /*! \fn FITS::FITS(const String& name, int bitpix, int naxis, long *naxes) ; \brief Constructor for creating new FITS objects containing images. This constructor is only called for creating new files (mode is not an argument) and creates a new primary HDU with the datatype & axes specified by bitpix, naxis, and naxes. The data are added to the new fits object and file by subsequent calls to FITS::pHDU().write( ) A file with a compressed image may be creating by appending to the end of the file name the same "[compress ...]" syntax specified in the cfitsio manual. Note however that the compressed image will be placed in the first extension and NOT in the primary HDU. If the filename corresponds to an existing file and does not start with the '!' character the construction will fail with a CantCreate exception. The arguments are: \param name The file to be written to disk \param bitpix the datatype of the primary image. bitpix may be one of the following CFITSIO constants: BYTE_IMG, SHORT_IMG, LONG_IMG, FLOAT_IMG, DOUBLE_IMG, USHORT_IMG, ULONG_IMG. Note that if you send in a bitpix of USHORT_IMG or ULONG_IMG, CCfits will set HDU::bitpix() to its signed equivalent (SHORT_IMG or LONG_IMG), and then set BZERO to 2^15 or 2^31. \param naxis the data dimension of the primary image \param naxes the array of axis lengths for the primary image. Ignored if naxis =0, i.e. the primary header is empty. extensions can be added arbitrarily to the file after this constructor is called. The constructors should write header information to disk: */ /*! \fn FITS::FITS(const string &name, RWmode mode, int hduIndex, bool readDataFlag, const std::vector& hduKeys, const std::vector& primaryKey) ; \brief read a single numbered HDU. Constructor analogous to the version that reads by name. This is required since HDU extensions are not required to have the EXTNAME or HDUNAME keyword by the standard. If there is no name, a dummy name based on the HDU number is created and becomes the key. If extended file name syntax is used and selects an extension other than hduIndex, a FITS::OperationNotSupported exception will be thrown. \param hduIndex The index of the HDU to be read. see above for other parameter definitions. */ /*! \fn FITS::~FITS() \brief destructor */ /*! \fn FITS::FITS (const String& fileName, const FITS& source) \brief create a new FITS object and corresponding file with copy of the primary header of the source If the filename corresponds to an existing file and does not start with the '!' character the construction will fail with a CantCreate exception. \param fileName New file to be created. \param source A previously created FITS object to be copied. see above for other parameter definitions. */ /*! \fn static void FITS::clearErrors() \brief clear the error stack and set status to zero. */ /*! \fn void FITS::deleteExtension(const String& doomed, int version=1) \brief Delete extension specified by name and version number. Removes extension from FITS object and memory copy. The index numbers of all HDU objects which follow this in the file will be decremented by 1. \param doomed the name of the extension to be deleted \param version an optional version number, the EXTVER keyword, defaults to 1 \exception NoSuchHDU Thrown if there is no extension with the specified version number \exception FitsError Thrown if there is a non-zero status code from cfitsio, e.g. if the delete operation is applied to a FITS file opened for read only access. */ /*! \fn void FITS::deleteExtension(int doomed) \brief Delete extension specified by extension number The index numbers of all HDU objects which follow this in the file will be decremented by 1. */ /*! \fn void FITS::read(const String &hduName, bool readDataFlag, const std::vector &keys, int version=1) ; \brief get data from single HDU from disk file. This is provided to allow the adding of additional HDUs to the FITS object after construction of the FITS object. After the read() functions have been called for the FITS object, subsequent read method to the Primary, ExtHDU, and Column objects will retrieve data from the FITS object in memory (those methods can be called to read data in those HDU objects that was not read when the HDU objects were constructed. All the read functions will throw NoSuchHDU exceptions on seek errors since they involve constructing HDU objects. The parameter definitions are as documented for the corresponding constructor. */ /*! \fn FITS::read (const std::vector& searchKeys, const std::vector &searchValues, bool readDataFlag, const std::vector& hduKeys, int version=1) ; \brief read method for read header or HDU that contains specified keywords. \param searchKeys A string vector of keywords to search for in each header \param searchValues A string vector of values those keywords are required to have for success. Note that the keys must be of type string. If any value does not need to be checked the corresponding searchValue element can be empty. \param readDataFlag boolean: if true, read data if HDU is found \param hduKeys Allows optional reading of keys in the HDU that is searched for if it is successfully found \param version Optional version number. If specified, checks the EXTVERS keyword. */ /*!\fn void FITS::copy(const HDU& source); \brief copy the HDU source into the FITS object. This function adds a copy of an HDU from another file into *this. It does not create a duplicate of an HDU in the file associated with *this. */ /*! \fn void FITS::read(const std::vector &hduNames, bool readDataFlag) \brief get data from a set of HDUs from disk file. This is provided to allow reading of HDUs after construction. see above for parameter definitions. */ /*! \fn void FITS::read(const std::vector &hduNames, const std::vector > &keys, bool readDataFlag = false, const std::vector& hduVersions = std::vector()); \brief get data from a set of HDUs from disk file, specifying keys and version numbers. This is provided to allow reading of HDUs after construction. see above for parameter definitions. */ /*! \fn void FITS::read (int hduIndex, bool readDataFlag = false, const std::vector &keys = std::vector()) ; \brief read an HDU specified by index number. This is provided to allow reading of HDUs after construction. see above for parameter definitions. */ /*! \fn const String& FITS::currentExtensionName () const \brief return the name of the extension that the fitsfile is currently addressing. If the extension in question does not have an EXTNAME or HDUNAME keyword, then the function returns $HDU$n, where n is the sequential HDU index number (primary HDU = 0). */ /*! \fn int FITS::open(RWmode mode= Read) ; \brief open the file with mode as specified on construction. Returns the 0-based current HDU index. */ /*! \fn bool FITS::create() ; \brief create new fits file on disk and construct the fitsfile pointer */ /*! \fn void FITS::close() throw(); \brief close the file. */ /*! \fn const FITS::ExtHDU& FITS::extension(int i) const \brief return FITS extension by index number. N.B. The input index number is currently defined as enumerating extensions, so the extension(1) returns HDU number 2. */ /*! \fn FITS::ExtHDU& FITS::extension(int i) ; \brief return FITS extension by index number. non-const version. see const version for details. */ /*! \fn friend std::ostream & operator << (std::ostream &s, const FITS& right) \brief Output operator. Calls output operators for HDUs in turn. This operator acts similarly to the ftool fdump for a fits file, except that there is no freedom to output partial information. The current implementation of this operator for PHDU objects only outputs the array sizes, not the data, which that for tables prints the data also. Provision of this operator is intended largely for debugging purposes. */ /*! \fn const ExtHDU& FITS::extension(const String& hduName, int version) const \brief return FITS extension by name and (optionally) version number. */ /*! \fn ExtHDU& FITS::extension(const String& hduName, int version) \brief return FITS extension by name and (optionally) version number. */ /*! \fn const std::multimap& FITS::extension () const; \brief return const reference to the extension container This is useful for such operations as extension().size() etc. */ /*! \fn Table* FITS::addTable (const String& hduName, int rows, const std::vector& columnName, const std::vector& columnFmt, const std::vector& columnUnit, HduType type, int version); \brief Add a table extension to an existing FITS object. Add extension to FITS object for file with w or rw access. \param rows The number of rows in the table to be created. \param columnName A vector containing the table column names \param columnFmt A vector containing the table column formats \param columnUnit (Optional) a vector giving the units of the columns. \param type The table type - AsciiTbl or BinaryTbl (defaults to BinaryTbl) the lists of columns are optional - one can create an empty table extension but if supplied, colType, columnName and colFmt must have equal dimensions. \todo the code should one day check that the version keyword is higher than any other versions already added to the FITS object (although cfitsio doesn't do this either). */ /*! \fn void FITS::addImage (const String& hduName, int bpix, std::vector& naxes, int version) \brief Add an image extension to an existing FITS object. (File with w or rw access). Does not make primary images, which are built in the constructor for the FITS file. The image data is not added here: it can be added by a call to one of the ExtHDU::write functions. bpix may be one of the following CFITSIO constants: BYTE_IMG, SHORT_IMG, LONG_IMG, FLOAT_IMG, DOUBLE_IMG, USHORT_IMG, ULONG_IMG. Note that if you send in a bpix of USHORT_IMG or ULONG_IMG, CCfits will set HDU::bitpix() to its signed equivalent (SHORT_IMG or LONG_IMG), and then set BZERO to 2^15 or 2^31. \todo Add a function for replacing the primary image */ /*! \fn FITS::resetPosition() ; \brief explicit call to set the fits file pointer to the primary. */ /*! \fn PHDU& FITS::pHDU() \brief return a reference to the primary HDU. */ /*! \fn const PHDU& FITS::pHDU() const \brief return a const reference to the primary HDU. */ /*! \fn FITS::currentExtension(); \brief return a non-const reference to whichever is the current extension. */ /*! \fn Table& FITS::filter (const String& expression, ExtHDU& inputTable, bool overwrite = true, bool readData = false); \brief Filter the rows of the inputTable with the condition expression, and return a reference to the resulting Table. This function provides an object oriented version of cfitsio's fits_select_rows call. The expression string is any boolean expression involving the names of the columns in the input table (e.g., if there were a column called "density", a valid expression might be "DENSITY > 3.5": see the cfitsio documentation for further details). [N.B. the "append" functionality described below does not work when linked with cfitsio 2.202 or prior because of a known issue with that version of the library. This causes the output to be a new extension with a correct header copy and version number but without the filtered data]. If the inputTable is an Extension HDU of this FITS object, then if overwrite is true the operation will overwrite the inputTable with the filtered version, otherwise it will append a new HDU with the same extension name but the next highest version (EXTVER) number available. */ /*! \fn void FITS::destroy() throw() \brief Erase FITS object and close corresponding file. Force deallocation and erase of elements of a FITS memory object. Allows a reset of everything inside the FITS object, and closes the file. The object is inaccessible after this call. destroy is public to allow users to reuse a symbol for a new file, but it is identical in operation to the destructor. */ /*! \fn void FITS::flush() \brief flush buffer contents to disk Provides manual control of disk writing operation. Image data are flushed automatically to disk after the write operation is completed, but not column data. */ /*! \fn const std::string& FITS::name () const \brief return filename of file corresponding to FITS object */ /*! \fn static const bool FITS::verboseMode () \brief return verbose setting for library If true, all messages that are reported by exceptions are printed to std::cerr. */ /*! \fn static void FITS::setVerboseMode (bool ) \brief set verbose setting for library */ /*! \fn void FITS::setCompressionType (int compType) \brief set the compression algorithm to be used when adding image extensions to the FITS object. \param compType Currently 3 symbolic constants are defined in cfitsio for specifying compression algorithms: GZIP_1, RICE_1, and PLIO_1. See the cfitsio documentation for more information about these algorithms. Entering NULL for compType will turn off compression and cause normal FITS images to be written. */ /*! \fn void FITS::setTileDimensions (const std::vector& tileSizes) \brief Set the dimensions of the tiles into which the image is divided during compression. \param tileSizes A vector of length N containing the tile dimesions. If N is less than the number of dimensions of the image it is applied to, the unspecified dimensions will be assigned a size of 1 pixel. If N is larger than the number of image dimensions, the extra dimensions will be ignored. The default cfitsio behavior is to create tiles with dimensions NAXIS1 x 1 x 1 etc. up to the number of image dimensions. */ /*! \fn void FITS::setNoiseBits (int noiseBits) \brief Set the cfitsio noisebits parameter used when compressing floating-point images. The default value is 4. Decreasing the value of noisebits will improve the overall compression efficiency at the expense of losing more information. */ /*! \fn int FITS::getCompressionType () const \brief Get the int specifying the compression algorithm to be used when adding an image extension. */ /*! \fn void FITS::getTileDimensions (std::vector& tileSizes) const \brief Get the current settings of dimension sizes for tiles used in image compression. \param tileSizes A vector to be filled with cfitsio's current tile dimension settings. CCfits will resize this vector to contain the proper number of values. */ /*! \fn int FITS::getNoiseBits () const \brief Get the cfitsio noisebits parameter used when compressing floating-point images. */ /*! \fn fitsfile* FITS::fitsPointer() const \brief return the CFITSIO fitsfile pointer for this FITS object */ // ! The FITS object class. Contains a primary HDU and Extensions indexed by name. class FITS { public: class NoSuchHDU : public FitsException //## Inherits: %396C90CB0236 { public: NoSuchHDU (const String& diag, bool silent = true); protected: private: private: //## implementation }; class OperationNotSupported : public FitsException //## Inherits: %39806C7600D5 { public: OperationNotSupported (const String& msg, bool silent = true); protected: private: private: //## implementation }; class CantOpen : public FitsException //## Inherits: %39C8EB1D02C0 { public: CantOpen (const String& diag, bool silent = true); protected: private: private: //## implementation }; struct CantCreate : public FitsException //## Inherits: %39C8EB10020B { CantCreate (const String& diag, bool silent = false); public: protected: private: private: //## implementation }; FITS (const String &name, RWmode mode = Read, bool readDataFlag = false, const std::vector& primaryKeys = std::vector()); // Open a file and read a specified HDU. // // Optional parameter allows the reading of specified primary HDU keys. FITS (const String &name, RWmode mode, const string &hduName, bool readDataFlag = false, const std::vector& hduKeys = std::vector(), const std::vector& primaryKey = std::vector(), int version = 1); // Read data from a set of specified HDUs. keywords can only be specified for the primary here. // The code will call a different constructor for the case where keywords are required for // the extensions. FITS (const String &name, RWmode mode, const std::vector& hduNames, bool readDataFlag = false, const std::vector& primaryKey = std::vector()); // Initialize a new FITS file object with the primary from a // different file. FITS (const String& fileName, const FITS& source); // Fully general FITS HDU reader. May read any part of fits file by // supplying HDU names and version numbers, and optionally // the data read flag. FITS (const String &name, RWmode mode, const std::vector& hduNames, const std::vector >& hduKeys, bool readDataFlag = false, const std::vector& primaryKeys = std::vector(), const std::vector& hduVersions = std::vector()); // Writing constructor. Takes a name and information to create an empty // Primary HDU which can then be filled with calls to HDU methods. FITS (const String& name, int bitpix, int naxis, long *naxes); // Open a file and read a specified HDU. // // Optional parameter allows the reading of specified primary HDU keys. FITS (const string &name, RWmode mode, int hduIndex, bool readDataFlag = false, const std::vector& hduKeys = std::vector(), const std::vector& primaryKey = std::vector()); // Open a file and read a HDU that contains specified // search keywords with [optional] specified values // (sometimes one just wants to know that the keyword is present). // // Optional parameters allows the reading of specified primary HDU keys and specified keywords in // the HDU of interest. FITS (const String &name, RWmode mode, const std::vector& searchKeys, const std::vector &searchValues, bool readDataFlag = false, const std::vector& hduKeys = std::vector(), const std::vector& primaryKey = std::vector(), int version = 1); ~FITS(); static void clearErrors (); void deleteExtension (const String& doomed, int version = 1); // Read keys and data from a single ExtHDU in the file. void read (const String &hduName, bool readDataFlag = false, const std::vector &keys = std::vector(), int version = 1); // Read multiple ExtHDUs. If the version number needs to be specified then one must call a // different method. void read (const std::vector &hduNames, bool readDataFlag = false); // Read selected data from multiple ExtHDUs void read (const std::vector &hduNames, const std::vector > &keys, bool readDataFlag = false, const std::vector& hduVersions = std::vector()); // Read keys and data from a single ExtHDU in the file. void read (int hduIndex, // Construct and Read HDU specified by number. One can add further HDUs by number using // the HDUCreator factory. bool readDataFlag = false, const std::vector &keys = std::vector()); // Open a file and read a HDU that contains specified // search keywords with [optional] specified values // (sometimes one just wants to know that the keyword is present). // // Optional parameters allows the reading of specified primary HDU keys and specified keywords in // the HDU of interest. void read (const std::vector& searchKeys, const std::vector &searchValues, bool readDataFlag = false, const std::vector& hduKeys = std::vector(), int version = 1); const ExtHDU& extension (int i) const; fitsfile* fitsPointer () const; ExtHDU& extension (int i); const ExtHDU& extension (const String& hduName, int version = 1) const; const PHDU& pHDU () const; PHDU& pHDU (); ExtHDU& extension (const String& hduName, int version = 1); friend std::ostream& operator << (std::ostream& s, const FITS& right); // ! add a new Table extension to a FITS object Table* addTable (const String& hduName, int rows, // ! Number of rows in new table. Mandatory const std::vector& columnName = std::vector(), // ! Optional set of column names for new table const std::vector& columnFmt = std::vector(), // ! Column formats for column units. Mandatory if columnName is specified const std::vector& columnUnit = std::vector(), // ! Column formats for column units. Optional HduType type = BinaryTbl, int version = 1); // ! add a new ImageExt (image extension) to the FITS object. A "writing" method. ExtHDU* addImage (const String& hduName, int bpix, std::vector& naxes, int version = 1); // Force destruction of the FITS object. Essentially // is a manual destructor call. void destroy () throw (); void flush (); const String& currentExtensionName () const; const ExtMap& extension () const; void resetPosition (); void currentExtensionName (const String& extName); const String& name () const; void copy (const HDU& source); Table& filter (const String& expression, ExtHDU& inputTable, bool overwrite = true, bool readData = false); ExtHDU& currentExtension (); void deleteExtension (int doomed); void setCompressionType (int compType); void setTileDimensions (const std::vector& tileSizes); void setNoiseBits (int noiseBits); int getCompressionType () const; void getTileDimensions (std::vector& tileSizes) const; int getNoiseBits () const; static bool verboseMode (); static void setVerboseMode (bool value); public: // Additional Public Declarations protected: // Additional Protected Declarations private: FITS(const FITS &right); FITS & operator=(const FITS &right); void unmapExtension (ExtHDU& doomed); int nextVersionNumber (const String& inputName) const; // read the primary HDU. Read the image if // readDataFlag is true. void read (bool readDataFlag = false, const std::vector& keys = std::vector()); // Returns index of current HDU where primary = 0. (Extended file syntax may cause a shift to an // extension.) int open (RWmode mode = Read); // Create returns true if a new file was created or an // existing file overwritten, false if appending. // // // It throws exception CantCreate or CantOpen if either fails. bool create (); // Close the fits file. // // Called in destructors so must not throw. int close () throw (); std::ostream & put (std::ostream &s) const; ExtHDU& extbyVersion (const String& hduName, int version) const; void pHDU (PHDU* value); void readExtensions (bool readDataFlag = false); ExtHDU* addExtension (ExtHDU* ext); void swap (FITS& right); ExtMap& extensionMap (); String nameOfUnmapped (int hduNum) const; void cloneHeader (const ExtHDU& source); // Check if caller is requesting an already read ExtHDU (ie. one // that's already been added to ExtMap). If hduIdx=0, check by // matching name and optional version. Otherwise check by matching // hduIdx. If found, returns pointer to the ExtHDU. Otherwise // returns 0. This will not throw. ExtHDU* checkAlreadyRead(const int hduIdx, const String& hduName = string(""), const int version=1) const throw(); // Additional Private Declarations private: //## implementation // Data Members for Class Attributes static bool s_verboseMode; // Data Members for Associations FITSBase* m_FITSImpl; // Additional Implementation Declarations friend void HDU::makeThisCurrent() const; }; // Class CCfits::FITS::NoSuchHDU // Class CCfits::FITS::OperationNotSupported // Class CCfits::FITS::CantOpen // Class CCfits::FITS::CantCreate // Class CCfits::FITS inline ExtHDU& FITS::extension (const String& hduName, int version) { return extbyVersion(hduName,version); } inline std::ostream& operator << (std::ostream& s, const FITS& right) { return right.put(s); } inline bool FITS::verboseMode () { return s_verboseMode; } inline void FITS::setVerboseMode (bool value) { s_verboseMode = value; } } // namespace CCfits #endif CCfits/FITSBase.h0000644000225700000360000000453611470265345013247 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef FITSBASE_H #define FITSBASE_H 1 // fitsio #include "fitsio.h" // string #include // map #include // CCfitsHeader #include "CCfits.h" namespace CCfits { class PHDU; class ExtHDU; } // namespace CCfits using std::string; namespace CCfits { class FITSBase { public: FITSBase (const String& fileName, RWmode rwmode); ~FITSBase(); void destroyPrimary (); void destroyExtensions (); int currentCompressionTileDim () const; void currentCompressionTileDim (int value); RWmode mode (); std::string& currentExtensionName (); std::string& name (); PHDU*& pHDU (); ExtMap& extension (); const ExtMap& extension() const; fitsfile*& fptr (); // Additional Public Declarations protected: // Additional Protected Declarations private: FITSBase(const FITSBase &right); FITSBase & operator=(const FITSBase &right); // Additional Private Declarations private: //## implementation // Data Members for Class Attributes int m_currentCompressionTileDim; // Data Members for Associations RWmode m_mode; std::string m_currentExtensionName; std::string m_name; PHDU* m_pHDU; ExtMap m_extension; fitsfile* m_fptr; // Additional Implementation Declarations }; // Class CCfits::FITSBase inline int FITSBase::currentCompressionTileDim () const { return m_currentCompressionTileDim; } inline void FITSBase::currentCompressionTileDim (int value) { m_currentCompressionTileDim = value; } inline RWmode FITSBase::mode () { return m_mode; } inline std::string& FITSBase::currentExtensionName () { return m_currentExtensionName; } inline std::string& FITSBase::name () { return m_name; } inline PHDU*& FITSBase::pHDU () { return m_pHDU; } inline ExtMap& FITSBase::extension () { return m_extension; } inline const ExtMap& FITSBase::extension() const { return m_extension; } inline fitsfile*& FITSBase::fptr () { return m_fptr; } } // namespace CCfits #endif CCfits/FITSUtil.h0000644000225700000360000006201211656760522013306 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef FITSUTIL_H #define FITSUTIL_H 1 #include "CCfits.h" // functional #include // complex #include // valarray #include // vector #include // string #include // FitsError #include "FitsError.h" #include namespace CCfits { namespace FITSUtil { /*! \namespace FITSUtil \brief FITSUtil is a namespace containing functions used internally by CCfits, but which might be of use for other applications. */ /*! \class MatchName \brief predicate for classes that have a name attribute; match input string with instance name. Usage: MatchName Ex; list ListObject; // ... ... // find_if(ListObject.begin(),ListObject().end(),bind2nd(Ex,"needle")); Since most of the classes within CCfits are not implemented with lists, these functions are now of little direct use. */ /*! \class MatchPtrName \brief as for MatchName, only with the input class a pointer. */ /*! \class MatchNum \brief predicate for classes that have an index attribute; match input index with instance value. Usage: MatchName Ex; list ListObject; // ... ... // find_if(ListObject.begin(),ListObject().end(),bind2nd(Ex,5)); Since most of the classes within CCfits are implemented with std::maps rather than lists, these functions are now of little direct use. */ /*! \class MatchPtrNum \brief as for MatchNum, only with the input class a pointer. */ /*! \class MatchType \brief function object that returns the FITS ValueType corresponding to an input intrinsic type This is particularly useful inside templated class instances where calls to cfitsio need to supply a value type. With this function one can extract the value type from the class type. usage: MatchType type; ValueType dataType = type(); Uses run-time type information (RTTI) methods. */ /*! \class UnrecognizedType @ingroup FITSexcept @brief exception thrown by MatchType if it encounters data type incompatible with cfitsio. */ /*! \class auto_array_ptr \brief A class that mimics the std:: library auto_ptr class, but works with arrays. This code was written by Jack Reeves and first appeared C++ Report, March 1996 edition. Although some authors think one shouldn't need such a contrivance, there seems to be a need for it when wrapping C code. Usage: replace float* f = new float[200]; with FITSUtil::auto_array_ptr f(new float[200]); Then the memory will be managed correctly in the presence of exceptions, and delete will be called automatically for f when leaving scope. */ /*! \fn explicit auto_array_ptr::auto_array_ptr (X* p = 0) throw (); \brief constructor. allows creation of pointer to null, can be modified by reset() */ /*! \fn explicit auto_array_ptr::auto_array_ptr (auto_array_ptr& right) throw (); \brief copy constructor */ /*!\fn auto_array_ptr::~auto_array_ptr(); \brief destructor. */ /*!\fn void auto_array_ptr::operator = (auto_array_ptr& right); \brief assignment operator: transfer of ownership semantics */ /*!\fn X& auto_array_ptr::operator * () throw (); \brief deference operator */ /*!\fn X& auto_array_ptr::operator [] (size_t i) throw (); \brief return a reference to the ith element of the array */ /*!\fn X auto_array_ptr::operator [] (size_t i) const throw (); \brief return a copy of the ith element of the array */ /*!\fn X* auto_array_ptr::get () const; \brief return a token for the underlying content of *this */ /*!\fn X* auto_array_ptr::release () throw (); \brief return underlying content of *this, transferring memory ownership */ /*!\fn X* auto_array_ptr::reset (X* p) throw (); \brief change the content of the auto_array_ptr to p */ /*!\fn static void auto_array_ptr::remove (X*& x) throw (); \brief utility function to delete the memory owned by x and set it to null. */ /*! \fn char** CharArray(const std::vector& inArray) \brief function object that returns a C-array of strings from a std::vector< std::vector > object, such as used in a string valued Table column. This exists because the return type for a specialization (T**) is incompatible with typenames T other than string, which return a T*. */ /*! \class CVarray \brief Function object class for returning C arrays from standard library objects used in the FITS library implementation. There are 3 versions which convert std::vector, std::valarray, and std::vector > objects to pointers to T, called CVarray, CAarray, and CVAarray. An alternative function, CharArray, is provided to deal with the special case of vector string arrays. */ /*! \fn T* CVarray::operator () (const std::vector& inArray); \brief operator returning C array for use with scalar column data. */ /*! \class CAarray \brief function object returning C array from a valarray. see CVarray for details */ /*! \fn T* CAarray::operator () (const std::valarray& inArray); \brief operator returning C array for use with image data. */ /*! \class CVAarray \brief function object returning C array from a vector of valarrays. see CVarray for details */ /*! \fn T* CVAarray::operator () (const std::vector< std::valarray >& inArray); \brief operator returning C array for use with vector column data. */ /*! \fn template void fill(std::vector< S > &outArray, const std::vector< T > &inArray, size_t first, size_t last); \brief Convert input vector of type T to output vector of type S. The functions FITSUtil::fill do conversions between CCfits' internal representation and user's input types. They encapsulate the task of memory allocation also, facilitating support of implicit conversions between the users data type and representation and what is required by the CCfits implementation. For example a user can create a std::vector for storage in a single row of a Binary Table column, of type long. The internal representation is a std::valarray object. \param outArray output data \param inArray input data \param first first element of inArray to be written to outArray \param last last element of inArray to be written to outArray */ #ifdef _MSC_VER #include "MSconfig.h" // for truncation double to float warning #endif template void swap(T& left,T& right); template void swap(std::vector& left, std::vector& right); string lowerCase(const string& inputString); string upperCase(const string& inputString); // Check if a file name includes an image compression specifier, // and return its location if it exists. string::size_type checkForCompressString(const string& fileName); struct InvalidConversion : public FitsException { InvalidConversion(const string& diag, bool silent=false); }; struct MatchStem : public std::binary_function { bool operator()(const string& left, const string& right) const; }; static const double d1(0); static const float f1(0); static const std::complex c1(0.); static const std::complex d2(0.); static const string s1(""); static const int i1(0); static const unsigned int u1(0); static const long l1(0); static const unsigned long ul1(0); static const LONGLONG ll1(0); static const short s2(0); static const unsigned short us1(0); static const bool b1(false); static const unsigned char b2(0); char** CharArray(const std::vector& inArray); string FITSType2String( int typeInt ); template void fill(std::vector& outArray, const std::vector& inArray,size_t first, size_t last); template void fill(std::valarray& outArray, const std::valarray& inArray); template void fill(std::valarray& outArray, const std::vector& inArray,size_t first, size_t last); template void fill(std::vector& outArray, const std::valarray& inArray); // VF<-AF void fill(std::vector >& outArray, const std::valarray >& inArray); // VF<-AD void fill(std::vector >& outArray, const std::valarray >& inArray); // VD<-AD void fill(std::vector >& outArray, const std::valarray >& inArray); // VD<-AF void fill(std::vector >& outArray, const std::valarray >& inArray); template void fill(std::vector& outArray, const std::vector& inArray, size_t first, size_t last); template void fill(std::vector& outArray, const std::vector& inArray, size_t first, size_t last); template void fill(std::valarray& outArray, const std::vector& inArray,size_t first, size_t last); // template // void fill(std::valarray >& outArray, const std::valarray >& inArray); // seems no other way of doing this. // VF<-VF #ifdef TEMPLATE_AMBIG_DEFECT void fillMSvfvf(std::vector >& outArray, const std::vector >& inArray, size_t first, size_t last); #endif void fill(std::vector >& outArray, const std::vector >& inArray, size_t first, size_t last); // VF<-VD #ifdef TEMPLATE_AMBIG_DEFECT void fillMSvfvd(std::vector >& outArray, const std::vector >& inArray, size_t first, size_t last); #endif void fill(std::vector >& outArray, const std::vector >& inArray, size_t first, size_t last); // VD<-VD #ifdef TEMPLATE_AMBIG_DEFECT void fillMSvdvd(std::vector >& outArray, const std::vector >& inArray, size_t first, size_t last); #endif void fill(std::vector >& outArray, const std::vector >& inArray, size_t first, size_t last); #ifdef TEMPLATE_AMBIG_DEFECT void fillMSvdvf(std::vector >& outArray, const std::vector >& inArray, size_t first, size_t last); #else void fill(std::vector >& outArray, const std::vector >& inArray, size_t first, size_t last); #endif // AF<-VD void fill(std::valarray >& outArray, const std::vector >& inArray, size_t first, size_t last); // AF<-VF #ifdef TEMPLATE_AMBIG_DEFECT void fillMSafvf(std::valarray >& outArray, const std::vector >& inArray, size_t first, size_t last); #else void fill(std::valarray >& outArray, const std::vector >& inArray, size_t first, size_t last); #endif // AD<-VF #ifdef TEMPLATE_AMBIG_DEFECT void fillMSadvf(std::valarray >& outArray, const std::vector >& inArray, size_t first, size_t last); #else void fill(std::valarray >& outArray, const std::vector >& inArray, size_t first, size_t last); #endif // AD<-VD #ifdef TEMPLATE_AMBIG_DEFECT void fillMSadvd(std::valarray >& outArray, const std::vector >& inArray, size_t first, size_t last); #else void fill(std::valarray >& outArray, const std::vector >& inArray, size_t first, size_t last); #endif // AF<-AF void fill(std::valarray >& outArray, const std::valarray >& inArray); // AD<-AD void fill(std::valarray >& outArray, const std::valarray >& inArray); // AF<-AD void fill(std::valarray >& outArray, const std::valarray >& inArray); // AD<-AF void fill(std::valarray >& outArray, const std::valarray >& inArray); #if TEMPLATE_AMBIG_DEFECT || TEMPLATE_AMBIG7_DEFECT void fillMSvsvs(std::vector& outArray, const std::vector& inArray, size_t first, size_t last); #endif void fill(std::vector& outArray, const std::vector& inArray, size_t first, size_t last); template string errorMessage(const S& out, const T& in); template struct MatchPtrName : public std::binary_function //## Inherits: %39491BC9025D { // Parameterized Class MatchPtrName bool operator () (const T& left, const string& right) const; public: protected: private: private: //## implementation }; template struct MatchName : public std::binary_function //## Inherits: %39491BC50121 { bool operator () (const T& left, const string& right) const; public: protected: private: private: //## implementation }; template struct MatchNum : public std::binary_function //## Inherits: %39491BCE01C0 { bool operator () (const T& left, const int& right) const; public: protected: private: private: //## implementation }; template struct MatchType { ValueType operator () (); public: protected: private: private: //## implementation }; template struct CVarray { T* operator () (const std::vector& inArray); public: protected: private: private: //## implementation }; template struct FitsNullValue { T operator () (); public: protected: private: private: //## implementation }; template struct MatchImageType { ImageType operator () (); public: protected: private: private: //## implementation }; template struct MatchPtrNum : public std::binary_function //## Inherits: %39491BD3034B { bool operator () (const T& left, const int& right) const; public: protected: private: private: //## implementation }; // auto_ptr analogue for arrays. template class auto_array_ptr { public: explicit auto_array_ptr (X* p = 0) throw (); explicit auto_array_ptr (auto_array_ptr& right) throw (); ~auto_array_ptr(); void operator = (auto_array_ptr& right); X& operator * () throw (); X& operator [] (size_t i) throw (); X operator [] (size_t i) const throw (); X* get () const; X* release () throw (); X* reset (X* p) throw (); static void remove (X*& x); protected: private: private: //## implementation // Data Members for Class Attributes X* m_p; }; template struct ComparePtrIndex : public std::binary_function //## Inherits: %3B24DB930299 { bool operator () (const T* left, const T* right); public: protected: private: private: //## implementation }; template struct CAarray { T* operator () (const std::valarray& inArray); public: protected: private: private: //## implementation }; template struct CVAarray { T* operator () (const std::vector< std::valarray >& inArray); public: protected: private: private: //## implementation }; class UnrecognizedType : public FitsException //## Inherits: %3CE143AB00C6 { public: UnrecognizedType (string diag, bool silent = true); protected: private: private: //## implementation }; // Parameterized Class CCfits::FITSUtil::MatchPtrName template inline bool MatchPtrName::operator () (const T& left, const string& right) const { return left->name() == right; } // Parameterized Class CCfits::FITSUtil::MatchName template inline bool MatchName::operator () (const T& left, const string& right) const { return left.name() == right; } // Parameterized Class CCfits::FITSUtil::MatchNum template inline bool MatchNum::operator () (const T& left, const int& right) const { return left.index() == right; } // Parameterized Class CCfits::FITSUtil::MatchType // Parameterized Class CCfits::FITSUtil::CVarray template inline T* CVarray::operator () (const std::vector& inArray) { // convert std containers used commonly in FITS to C arrays in an exception // safe manner that is also clear about resource ownership. auto_array_ptr pC(new T[inArray.size()]); T* c = pC.get(); std::copy(inArray.begin(),inArray.end(),&c[0]); return pC.release(); } // Parameterized Class CCfits::FITSUtil::FitsNullValue template inline T FitsNullValue::operator () () { // This works for int types. Float, complex, and string types // are handled below with specialized templates. return 0; } // Parameterized Class CCfits::FITSUtil::MatchImageType // Parameterized Class CCfits::FITSUtil::MatchPtrNum template inline bool MatchPtrNum::operator () (const T& left, const int& right) const { return left->index() == right; } // Parameterized Class CCfits::FITSUtil::auto_array_ptr // Parameterized Class CCfits::FITSUtil::ComparePtrIndex // Parameterized Class CCfits::FITSUtil::CAarray // Parameterized Class CCfits::FITSUtil::CVAarray // Class CCfits::FITSUtil::UnrecognizedType // Parameterized Class CCfits::FITSUtil::MatchPtrName // Parameterized Class CCfits::FITSUtil::MatchName // Parameterized Class CCfits::FITSUtil::MatchNum // Parameterized Class CCfits::FITSUtil::MatchType template ValueType MatchType::operator () () { if ( typeid(T) == typeid(d1) ) return Tdouble; if ( typeid(T) == typeid(f1) ) return Tfloat; if ( typeid(T) == typeid(c1) ) return Tcomplex; if ( typeid(T) == typeid(d2) ) return Tdblcomplex; if ( typeid(T) == typeid(s1) ) return Tstring; if ( typeid(T) == typeid(i1) ) return Tint; if ( typeid(T) == typeid(u1) ) return Tuint; if ( typeid(T) == typeid(s2) ) return Tshort; if ( typeid(T) == typeid(us1) ) return Tushort; if ( typeid(T) == typeid(b1) ) return Tlogical; if ( typeid(T) == typeid(b2) ) return Tbyte; if ( typeid(T) == typeid(l1) ) return Tlong; if ( typeid(T) == typeid(ul1) ) return Tulong; // Carefull, on some compilers LONGLONG == long, // so this should go after test for long. if ( typeid(T) == typeid(ll1) ) return Tlonglong; throw UnrecognizedType("Invalid data type for FITS Data I/O\n"); } // Parameterized Class CCfits::FITSUtil::CVarray // Parameterized Class CCfits::FITSUtil::MatchImageType template ImageType MatchImageType::operator () () { if ( typeid(T) == typeid(b2) ) return Ibyte; if ( typeid(T) == typeid(s2) ) return Ishort; if ( typeid(T) == typeid(l1) ) return Ilong; if ( typeid(T) == typeid(f1) ) return Ifloat; if ( typeid(T) == typeid(d1) ) return Idouble; if ( typeid(T) == typeid(us1) ) return Iushort; if ( typeid(T) == typeid(ul1) ) return Iulong; MatchType errType; string diag ("Image: "); diag += FITSType2String(errType()); throw UnrecognizedType(diag); } // Parameterized Class CCfits::FITSUtil::MatchPtrNum // Parameterized Class CCfits::FITSUtil::auto_array_ptr template auto_array_ptr::auto_array_ptr (X* p) throw () : m_p(p) { } template auto_array_ptr::auto_array_ptr (auto_array_ptr& right) throw () : m_p(right.release()) { } template auto_array_ptr::~auto_array_ptr() { delete [] m_p; } template void auto_array_ptr::operator = (auto_array_ptr& right) { if (this != &right) { remove(m_p); m_p = right.release(); } } template X& auto_array_ptr::operator * () throw () { return *m_p; } template X& auto_array_ptr::operator [] (size_t i) throw () { return m_p[i]; } template X auto_array_ptr::operator [] (size_t i) const throw () { return m_p[i]; } template X* auto_array_ptr::get () const { return m_p; } template X* auto_array_ptr::release () throw () { return reset(0); } template X* auto_array_ptr::reset (X* p) throw () { // set the auto_ptr to manage p and return the old pointer it was managing. X* __tmp = m_p; m_p = p; return __tmp; } template void auto_array_ptr::remove (X*& x) { X* __tmp(x); x = 0; delete [] __tmp; } // Parameterized Class CCfits::FITSUtil::ComparePtrIndex template bool ComparePtrIndex::operator () (const T* left, const T* right) { return (left->index() < right->index()); } // Parameterized Class CCfits::FITSUtil::CAarray template T* CAarray::operator () (const std::valarray& inArray) { size_t n(inArray.size()); auto_array_ptr pC(new T[n]); T* c= pC.get(); for (size_t j = 0; j < n; ++j) c[j] = inArray[j]; return pC.release(); } // Parameterized Class CCfits::FITSUtil::CVAarray template T* CVAarray::operator () (const std::vector< std::valarray >& inArray) { size_t sz(0); size_t n(inArray.size()); std::vector nr(n); size_t i = 0; // for MS VC++ bug for ( i = 0; i < n; ++i) { nr[i] = inArray[i].size(); sz += nr[i]; } auto_array_ptr pC(new T[sz]); T* c = pC.get(); size_t k(0); for ( i = 0; i < n; ++i) { size_t& m = nr[i]; const std::valarray& current = inArray[i]; for (size_t j=0; j < m ; ++j) c[k++] = current[j]; } return pC.release(); } } // namespace FITSUtil } // namespace CCfits namespace CCfits { namespace FITSUtil { template void swap(T& left, T& right) { T temp(left); left = right; right = temp; } template void swap(std::vector& left, std::vector& right) { left.swap(right); } template <> inline string FitsNullValue::operator () () { return string(""); } template <> inline float FitsNullValue::operator () () { return FLOATNULLVALUE; } template <> inline double FitsNullValue::operator () () { return DOUBLENULLVALUE; } template <> inline std::complex FitsNullValue >::operator () () { return std::complex(FLOATNULLVALUE); } template <> inline std::complex FitsNullValue >::operator () () { return std::complex(DOUBLENULLVALUE); } } // end namespace FITSUtil } // end namespace CCfits #endif CCfits/FITSUtilT.h0000644000225700000360000001047011470265345013430 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef FITSUTILT_H #define FITSUTILT_H #ifdef _MSC_VER #include "MSconfig.h" // for truncation warning #endif #ifdef HAVE_CONFIG_H #include "config.h" #endif #include "FITSUtil.h" #include #include #ifdef SSTREAM_DEFECT #include #else #include #endif namespace CCfits { namespace FITSUtil { // vector to vector conversion. template void fill(std::vector& outArray, const std::vector& inArray, size_t first, size_t last) { // vector to vector assign. stdlib takes care of deletion. int range = last - first + 1; if (outArray.size() != static_cast(range)) outArray.resize(range); for (size_t j = first - 1; j < last; ++j) { outArray[j - first + 1] = static_cast(inArray[j]); } } // vector to valarray conversion. template void fill(std::valarray& outArray, const std::vector& inArray, size_t first, size_t last) { // vector to valarray assign int range = last - first + 1; if (outArray.size() != static_cast(range)) outArray.resize(range); for (size_t j = first - 1; j < last; ++j) { outArray[j - first + 1] = static_cast(inArray[j]); } } // valarray to valarray conversion. template void fill(std::valarray& outArray, const std::valarray& inArray) { size_t n = inArray.size(); if (outArray.size() != n) outArray.resize(n); for (size_t j = 0;j < n; ++j) outArray[j] = static_cast(inArray[j]); } #ifdef TEMPLATE_AMBIG7_DEFECT template void fillMSva(std::vector& outArray, const std::valarray& inArray) { size_t n = inArray.size(); if (outArray.size() != n) outArray.resize(n); for (size_t j = 0;j < n; ++j) outArray[j] = static_cast(inArray[j]); } #else template void fill(std::vector& outArray, const std::valarray& inArray) { size_t n = inArray.size(); if (outArray.size() != n) outArray.resize(n); for (size_t j = 0;j < n; ++j) outArray[j] = static_cast(inArray[j]); } #endif // throw exceptions for string conversions to anything other than string. template void fill(std::vector& outArray, const std::vector& inArray, size_t first, size_t last) { first = 0; last = 0; throw InvalidConversion(errorMessage(outArray,inArray),false); } template void fill(std::vector& outArray, const std::vector& inArray, size_t first, size_t last) { first = 0; last = 0; throw InvalidConversion(errorMessage(outArray,inArray),false); } template string errorMessage( const S& out, const T& in) { #ifdef SSTREAM_DEFECT std::ostrstream errMsg; #else std::ostringstream errMsg; #endif errMsg << " Error: no conversion from " << typeid(in).name() << " to " << typeid(out).name() << std::endl; return errMsg.str(); } } } // namespace CCfits #endif CCfits/FitsError.h0000644000225700000360000000732211470265345013622 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef FITSERROR_H #define FITSERROR_H 1 #include #include //#include //#include //#include #include using std::string; namespace CCfits { /*! \class FitsException @ingroup FITSexcept @brief FitsException is the base class for all exceptions thrown by this library. All exceptions derived from this class can be caught by a single 'catch' clause catching FitsException by reference (which is the point of this base class design). A static "verboseMode" parameter is provided by the FITS class to control diagnostics - if FITS::verboseMode() is true, all diagnostics are printed (for debugging purposes). If not, then a boolean silent determines printing of messages. Each exception derived from FitsException must define a default value for the silent parameter. */ /*! \fn FitsException::FitsException(const string& diag, bool& silent) \param diag A diagnostic string to be printed optionally. \param silent A boolean controlling the printing of messages */ /*! \fn const string& FitsException::message () const \brief returns the error message This returns the diagnostic error message associated with the exception object, and which is accessible regardless of the verboseMode and silent flag settings. */ /*! \class FitsError @ingroup FITSexcept @brief FitsError is the exception thrown by non-zero cfitsio status codes. */ /*! \fn FitsError::FitsError(int errornum, bool silent) \brief ctor for cfitsio exception: translates status code into cfitsio error message The exception prefixes the string "Fits Error: " to the message printed by cfitsio. \param errornum The cfitsio status code produced by the error. \param silent A boolean controlling the printing of messages */ /*! \class FitsFatal @ingroup FITSexcept @brief [potential] base class for exceptions to be thrown on internal library error. As of this version there are no subclasses. This error requests that the user reports this circumstance to HEASARC. */ /*! \fn FitsFatal::FitsFatal(const string& diag) \brief Prints a message starting "*** CCfits Fatal Error: ..." and calls terminate() \param diag A diagnostic string to be printed identifying the context of the error. */ // Base class for exceptions generated by CCfits that don't // return FITS error codes (for example, array errors or seek errors). class FitsException { public: FitsException (const string& msg, bool& silent); const string& message () const; protected: void addToMessage (const string& msgQual); private: private: //## implementation // Data Members for Class Attributes string m_message; }; class FitsError : public FitsException //## Inherits: %399170BD017D { public: FitsError (int errornum, bool silent = true); protected: private: void printMsg (int error); private: //## implementation }; class FitsFatal { public: FitsFatal (const string& diag); protected: private: private: //## implementation }; // Class CCfits::FitsException inline const string& FitsException::message () const { return m_message; } // Class CCfits::FitsError // Class CCfits::FitsFatal } // namespace CCfits #endif CCfits/HDU.h0000644000225700000360000010036011470312433012306 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef HDU_H #define HDU_H 1 #include // vector #include #include // CCfitsHeader #include "CCfits.h" // Keyword #include "Keyword.h" // NewKeyword #include "NewKeyword.h" // FitsError #include "FitsError.h" // FITSUtil #include "FITSUtil.h" namespace CCfits { class FITS; class FITSBase; } // namespace CCfits namespace CCfits { class HDUCreator; // Needed for friend declaration } #ifdef _MSC_VER #include "MSconfig.h" // for truncation warning #endif #include "KeywordT.h" namespace CCfits { /*! \class HDU \brief Base class for all HDU [Header-Data Unit] objects. HDU objects in CCfits are either PHDU (Primary HDU objects) or ExtHDU (Extension HDU) objects. Following the behavior. ExtHDUs are further subclassed into ImageExt or Table objects, which are finally AsciiTable or BinTable objects. HDU's public interface gives access to properties that are common to all HDUs, largely required keywords, and functions that are common to all HDUs, principally the manipulation of keywords and their values. HDUs must be constructed by HDUCreator objects which are called by FITS methods. Each HDU has an embedded pointer to a FITSBase object, which is private to FITS [FITSBase is a pointer encapsulating the resources of FITS. For details of this coding idiom see Exceptional C++ by Herb Sutter (2000) and references therein]. */ /*! \class HDU::InvalidExtensionType @ingroup FITSexcept @brief exception to be thrown if user requests extension type that can not be understood as ImageExt, AsciiTable or BinTable. */ /*! \fn HDU::InvalidExtensionType::InvalidExtensionType (const string& diag, bool silent); \brief Exception ctor, prefixes the string "Fits Error: Extension Type: " before the specific message. \param diag A specific diagnostic message \param silent if true, print message whether FITS::verboseMode is set or not. */ /*! \class HDU::InvalidImageDataType @ingroup FITSexcept @brief exception to be thrown if user requests creation of an image of type not supported by cfitsio. */ /*! \fn HDU::InvalidImageDataType::InvalidImageDataType (const string& diag, bool silent); \brief Exception ctor, prefixes the string "Fits Error: Invalid Data Type for Image " before the specific message. \param diag A specific diagnostic message \param silent if true, print message whether FITS::verboseMode is set or not. */ /*! \class HDU::NoSuchKeyword @ingroup FITSexcept @brief exception to be thrown on seek errors for keywords. */ /*! \fn HDU::NoSuchKeyword::NoSuchKeyword (const string& diag, bool silent); \brief Exception ctor, prefixes the string "Fits Error: Keyword not found: " before the specific message. \param diag A specific diagnostic message, usually the name of the keyword requested. \param silent if true, print message whether FITS::verboseMode is set or not. */ /*! \class HDU::NoNullValue @ingroup FITSexcept @brief exception to be thrown on seek errors for keywords. */ /*! \fn HDU::NoNullValue::NoNullValue (const string& diag, bool silent); \brief Exception ctor, prefixes the string "Fits Error: No Null Pixel Value specified for Image " before the specific message. \param diag A specific diagnostic message, the name of the HDU if not the primary. \param silent if true, print message whether FITS::verboseMode is set or not. */ /*! \fn HDU::HDU(const HDU &right); \brief copy constructor */ /*! \fn virtual HDU::~HDU(); \brief destructor */ /*! \fn bool HDU::operator==(const HDU &right) const; \brief equality operator */ /*! \fn bool HDU::operator!=(const HDU &right) const; \brief inequality operator */ /*! \fn const String& HDU::getHistory(); \brief read the history information from the HDU and add it to the FITS object. The history string found in the header is concatenated and returned to the calling function */ /*! \fn const String& HDU::getComments(); \brief read the comments from the HDU and add it to the FITS object. The comment string found in the header is concatenated and returned to the calling function */ /*! \fn void HDU::readAllKeys(); \brief read all of the keys in the header This member function reads keys that are not meta data for columns or image information, [which are considered to be part of the column or image objects]. Also, history and comment keys are read and returned by getHistory() and getComment(). The exact list of keyword classes this will read is returned by the function keywordCategories(). Note that readAllKeys can only construct keys of type string, double, complex, integer, and bool because the FITS header records do not encode exact type information. */ /*! \fn void HDU::copyAllKeys (const HDU* inHdu); \brief copy all keys from another header Parameters: \param inHdu (const HDU*) An existing HDU whose keys will be copied. This will copy all keys that exist in the keyWord map of inHDU, and which belong to one of the keyword classes returned by the keywordCategories() function. This is the same group of keyword classes used by readAllKeys(). */ /*! \fn static std::vector HDU::keywordCategories (); \brief return the enumerated keyword categories used by readAllKeys() and copyAllKeys() This returns a vector of integers indicating which categories of keywords apply for the readAllKeys and copyAllKeys functions. The list of categories currently hardcoded is: TYP_CMPRS_KEY (20), TYP_CKSUM_KEY (100), TYP_WCS_KEY (110), TYP_REFSYS_KEY (120), and TYP_USER_KEY (150). For the list of ALL keyword categories, see the CFITSIO documentation for the fits_get_keyclass function. */ /*! \fn void HDU::writeComment(const String& comment = "Generic Comment"); \brief write a comment string. A default value for the string is given ("Generic Comment String") so users can put a placeholder call to this function in their code. */ /*! \fn void HDU::writeHistory (const String& history = "Generic History String"); \brief write a history string. A default value for the string is given ("Generic History String") so users can put a placeholder call to this function in their code. */ /*! \fn void HDU::writeDate(); \brief write a date string to *this. */ /*! \fn void HDU::deleteKey(const String& doomed) \brief delete a keyword from the header removes doomed from the FITS file and from the FITS object */ /*! \fn const String& HDU::history() const; \brief return the history string previously read by getHistory() */ /*! \fn const String& HDU::comment() const; \brief return the comment string previously read by getComment() */ /*! \fn template void HDU::readKey(const String& keyName, T& val); \brief read a keyword of specified type from the header of a disk FITS file and return its value. T is one of the types String, double, float, int, std::complex, and bool. If a Keyword object with the name keyName already exists in this HDU due to a previous read call, then this will re-read from the file and create a new Keyword object to replace the existing one. */ /*! \fn template void HDU::readKeys(std::vector& keyNames, std::vector& vals); \brief read a set of specified keywords of the same data type from the header of a disk FITS file and return their values T is one of the types String, double, float, int, std::complex, and bool. */ /*! \fn virtual HDU * HDU::clone (FITSBase* p) const = 0; \brief virtual copy constructor, to be implemented in subclasses. */ /*! \fn void HDU::makeThisCurrent () const; \brief move the fitsfile pointer to this current HDU. This function should never need to be called by the user since it is called internally whenever required. */ /*! \fn Keyword& HDU::keyWord (const String& keyName); \brief return a (previously read) keyword from the HDU object. */ /*! \fn int HDU::index () const; \brief return the HDU number */ /*! \fn void HDU::index (int value); \brief set the HDU number */ /*! \fn const std::map& HDU::keyWord () const; \brief return the associative array containing the HDU Keywords that have been read so far. */ /*! \fn const Keyword& HDU::keyWord (const string& keyname) const; \brief return a (previously read) keyword from the HDU object. const version */ /*! \fn HDU::HDU (FITSBase* p = 0); \brief default constructor, called by HDU subclasses that read from FITS files. */ /*! \fn HDU::HDU (FITSBase* p, int bitpix,int naxis, const std::vector& axes); \brief constructor for creating new HDU objects, called by HDU subclasses writing to FITS files. */ /*! \fn virtual bool HDU::compare (const HDU &right) const; \brief internal implementation of equality operations. */ /*! \fn fitsfile* HDU::fitsPointer () const; \brief return the fitsfile pointer for the FITS object containing the HDU */ /*! \fn std::map& HDU::keyWord (); \brief return the associative array containing the HDU keywords so far read. */ /*! \fn long HDU::axis (size_t index) const; \brief return the size of axis numbered index [zero based]. */ /*! \fn void HDU::axes () const; \brief return the number of axes in the HDU data section (always 2 for tables). */ /*! \fn const long HDU::bitpix () const; \brief return the data type keyword. Takes values denoting the image data type for images, and takes the fixed value 8 for tables. */ /*! \fn const FITSBase *& HDU::parent () const; \brief return reference to the pointer representing the FITSBase object containing the HDU */ /*! \fn std::vector< long >& HDU::naxes (); \brief return the HDU data axis array. */ /*! \fn long HDU::axis (size_t i) const; \brief return the length of HDU data axis i. */ /*! \fn virtual double HDU::scale () const; \brief return the BSCALE keyword value */ /*! \fn virtual void HDU::scale (double value); \brief set the BSCALE keyword value for images (see warning for images of int type) For primary HDUs and image extensions, this will add (or update) the BSCALE keyword in the header. The new setting will affect future image array read/writes as described in section 4.7 Data Scaling of the CFITSIO manual. For table extensions this function does nothing. WARNING: If the image contains integer-type data (as indicated by the bitpix() return value), the new scale and zero value combination must not be such that the scaled data would require a floating-point type (this uses the CFITSIO function fits_get_img_equivtype to make the determination). If this situation occurs, the function will throw a FitsException. */ /*! \fn virtual double HDU::zero () const; \brief return the BZERO keyword value */ /*! \fn virtual double HDU::zero (double value); \brief set the BZERO keyword value for images (see warning for images of int type) For primary HDUs and image extensions, this will add (or update) the BZERO keyword in the header. The new setting will affect future image array read/writes as described in section 4.7 Data Scaling of the CFITSIO manual. For table extensions this function does nothing. WARNING: If the image contains integer-type data (as indicated by the bitpix() return value), the new scale and zero value combination must not be such that the scaled data would require a floating-point type (this uses the CFITSIO function fits_get_img_equivtype to make the determination). If this situation occurs, the function will throw a FitsException. */ /*! \fn void HDU::suppressScaling (bool toggle = true); \brief turn off image scaling regardless of the BSCALE and BZERO keyword values For toggle = true, this turns off image scaling for future read/writes by resetting the scale and zero to 1.0 and 0.0 respectively. It does NOT modify the BSCALE and BZERO keywords. If toggle = false, the scale and zero values will be restored to the keyword values. */ /*! \fn template Keyword& HDU::addKey(const String& name, T value, const String& comment) ; \brief create a new keyword in the HDU with specified value and comment fields The function returns a reference to keyword object just created. If a keyword with this name already exists, it will be overwritten. Note that this is mostly intended for adding user-defined keywords. It should not be used to add keywords for which there are already specific HDU functions, such as scaling or checksum. Nor should it be used for image or column structural keywords, such as BITPIX, NAXIS, TFORMn, etc. As a general rule, it is best to use this for keywords belonging to the same categories listed in the keywordCategories() function. Parameters: \param name (String) The keyword name \param value (Recommended T = String, double, std::complex, int, or bool \param comment (String) the keyword value It is possible to create a keyword with a value of any of the allowed data types in fitsio (see the cfitsio manual section 4.3). However one should be aware that if this keyword value is read in from the file at a later time, it will be stored in a templated Keyword subclass (KeyData) where T will be one of the recommended types listed above. Also see Keyword::value (T& val) for more details. */ /*! \fn Keyword* HDU::addKey(const Keyword* inKeyword); \brief create a copy of an existing Keyword and add to HDU This is particularly useful for copying Keywords from one HDU to another. For example the inKeyword pointer might come from a different HDU's std::map. If a keyword with this name already exists, it will be overwritten. The return value is a pointer to the newly created Keyword inserted into this HDU. Also see copyAllKeys(). */ /*! \fn std::ostream& operator << (std::ostream& s, const CCfits::HDU& right); \brief Output operator for HDU objects. Primarily for testing purposes. */ /*! \fn void HDU::writeChecksum (); \brief compute and write the DATASUM and CHECKSUM keyword values Wrapper for the CFITSIO function fits_write_chksum: This performs the datasum and checksum calculations for this HDU, as described in the CFITSIO manual. If either the DATASUM or CHECKSUM keywords already exist, their values will be updated. */ /*! \fn void HDU::updateChecksum (); \brief update the CHECKSUM keyword value, assuming DATASUM exists and is correct Wrapper for the CFITSIO function fits_update_chksum: This recomputes and writes the CHECKSUM value with the assumption that the DATASUM value is correct. If the DATASUM keyword doesn't yet exist or is not up-to-date, use the HDU::writeChecksum function instead. This will throw a FitsError exception if called when there is no DATASUM keyword in the header. */ /*! \fn std::pair HDU::verifyChecksum () const; \brief verify the HDU by computing the checksums and comparing them with the CHECKSUM/DATASUM keywords Wrapper for the CFITSIO function fits_verify_chksum: The data unit is verified correctly if the computed checksum equals the DATASUM keyword value, and the HDU is verified if the entire checksum equals zero (see the CFITSIO manual for further details). This returns a std::pair where the pair's first data member = DATAOK and second = HDUOK. DATAOK and HDUOK values will be = 1 if verified correctly, 0 if the keyword is missing, and -1 if the computed checksum is not correct. */ /*! \fn std::pair HDU::getChecksum () const; \brief compute and return the checksum values for the HDU without creating or modifying the CHECKSUM/DATASUM keywords. Wrapper for the CFITSIO function fits_get_chksum: This returns a std::pair where the pair's first data member holds the datasum value and second holds the hdusum value. */ class HDU { public: class InvalidImageDataType : public FitsException //## Inherits: %394FBA12005C { public: InvalidImageDataType (const string& diag, bool silent = true); protected: private: private: //## implementation }; class InvalidExtensionType : public FitsException //## Inherits: %3964C1D00352 { public: InvalidExtensionType (const string& diag, bool silent = true); protected: private: private: //## implementation }; class NoSuchKeyword : public FitsException //## Inherits: %398865D10264 { public: NoSuchKeyword (const string& diag, bool silent = true); protected: private: private: //## implementation }; class NoNullValue : public FitsException //## Inherits: %3B0D58CE0306 { public: NoNullValue (const string& diag, bool silent = true); protected: private: private: //## implementation }; HDU(const HDU &right); bool operator==(const HDU &right) const; bool operator!=(const HDU &right) const; virtual HDU * clone (FITSBase* p) const = 0; fitsfile* fitsPointer () const; FITSBase* parent () const; // By all means necessary, set the fitsfile pointer so that // this HDU is the current HDU. // // This would appear to be a good candidate for the public // interface. virtual void makeThisCurrent () const; const String& getComments (); const string& comment () const; // Write a history string. A default value for the string is given // "GenericComment" so users can put a placeholder call // to this function in their code before knowing quite what should go in it. void writeComment (const String& comment = "Generic Comment"); const String& getHistory (); const string& history () const; // Write a history string. A default value for the string is given // "Generic History String" so users can put a placeholder call // to this function in their code before knowing quite what should go in it. void writeHistory (const String& history = "Generic History String"); // Write a date card. void writeDate (); friend std::ostream& operator << (std::ostream& s, const CCfits::HDU& right); long axes () const; long axis (size_t index) const; void index (int value); int index () const; long bitpix () const; virtual double scale () const; virtual void scale (double value); virtual double zero () const; virtual void zero (double value); void suppressScaling (bool toggle = true); void writeChecksum (); void updateChecksum (); std::pair verifyChecksum () const; std::pair getChecksum () const; void deleteKey (const String& doomed); void readAllKeys (); void copyAllKeys (const HDU* inHdu); std::map& keyWord (); Keyword& keyWord (const String& keyName); static std::vector keywordCategories (); const std::map& keyWord () const; const Keyword& keyWord (const string& keyname) const; public: // Additional Public Declarations template void readKey(const String& keyName, T& val); template void readKeys(std::vector& keyNames, std::vector& vals); template Keyword& addKey(const String& name, T val, const String& comment); // This non-template function could be entered with Rose, but // it's instead placed with the other addKey function to // simplify the Doxygen generated doc file output. Keyword* addKey(const Keyword* inKeyword); Keyword& addKey(const String& name, const char* charString, const String& comment); #ifdef TEMPLATE_AMBIG_DEFECT inline void readKeyMS(const String& keyName, int & val); inline void readKeys(std::vector& keyNames, std::vector& vals); #endif protected: // Functions as the default constructor, which is required for // the map container class. HDU (FITSBase* p = 0); HDU (FITSBase* p, int bitpix, int naxis, const std::vector& axes); virtual ~HDU(); Keyword& readKeyword (const String &keyname); void readKeywords (std::list& keynames); virtual std::ostream & put (std::ostream &s) const = 0; void bitpix (long value); bool checkImgDataTypeChange (double zero, double scale) const; long& naxis (); void naxis (const long& value); // Flags whether there were any null values found in the // last read operation. bool& anynul (); void anynul (const bool& value); FITSBase*& parent (); std::vector< long >& naxes (); long& naxes (size_t index); void naxes (size_t index, const long& value); // Additional Protected Declarations private: // clear the FITS Keyword map. To be called by // the dtor and the copy/assignment operations. void clearKeys (); virtual void initRead () = 0; void readHduInfo (); Keyword* addKeyword (Keyword* newKey); virtual bool compare (const HDU &right) const; // clear the FITS Keyword map. To be called by // the dtor and the copy/assignment operations. void copyKeys (const HDU& right); String getNamedLines (const String& name); // save keyword found by read all keys into the array of keywords that have been read. // Similar to addKeyword except there's no write and no returned value. For use by readAllKeys() void saveReadKeyword (Keyword* newKey); void zeroInit (double value); void scaleInit (double value); // Additional Private Declarations private: //## implementation // Data Members for Class Attributes long m_naxis; long m_bitpix; int m_index; bool m_anynul; string m_history; string m_comment; double m_zero; // Floating point scale factor for image data that takes // the value of the BSCALE parameter. double m_scale; // Data Members for Associations std::map m_keyWord; FITSBase* m_parent; std::vector< long > m_naxes; // Additional Implementation Declarations static const size_t s_nCategories; static const int s_iKeywordCategories[]; friend class HDUCreator; friend Keyword* KeywordCreator::getKeyword(const String& keyname, HDU* p); friend Keyword* KeywordCreator::getKeyword(const String& keyname, ValueType keyType, HDU* p); }; template Keyword& HDU::addKey(const String& name, T value, const String& comment) { makeThisCurrent(); NewKeyword keyCreator(this,value); Keyword& newKey = *(addKeyword(keyCreator.createKeyword(name,comment))); return newKey; } template void HDU::readKey(const String& keyName, T& val) { makeThisCurrent(); Keyword& key = readKeyword(keyName); key.value(val); } template void HDU::readKeys(std::vector& keyNames, std::vector& vals) { size_t nRead = keyNames.size(); std::list valKeys; std::list valList; for (size_t i = 0; i < nRead; i++) valKeys.push_back(keyNames[i]); // read all the keys requested, rejecting those that don't exist. readKeywords(valKeys); // get the values of all of the requested keys, rejecting those of the // wrong type. T current; std::list::iterator it = valKeys.begin(); while (it != valKeys.end()) { try { m_keyWord[*it]->value(current); valList.push_back(current); ++it; } catch ( Keyword::WrongKeywordValueType ) { it = valKeys.erase(it); } } keyNames.erase(keyNames.begin(),keyNames.end()); if (!valList.empty()) { if (valList.size() != vals.size()) vals.resize(valList.size()); size_t i=0; for (typename std::list::const_iterator it1 = valList.begin(); it1 != valList.end(); ++it1,++i) { vals[i] = *it1; } for (std::list::const_iterator it1= valKeys.begin(); it1 != valKeys.end(); ++it1) { keyNames.push_back(*it1); } } } // Class CCfits::HDU::InvalidImageDataType // Class CCfits::HDU::InvalidExtensionType // Class CCfits::HDU::NoSuchKeyword // Class CCfits::HDU::NoNullValue // Class CCfits::HDU inline const string& HDU::comment () const { return m_comment; } inline const string& HDU::history () const { return m_history; } inline std::ostream& operator << (std::ostream& s, const CCfits::HDU& right) { return right.put(s); } inline long HDU::axes () const { return m_naxis; } inline long HDU::axis (size_t index) const { return m_naxes[index]; } inline void HDU::index (int value) { m_index = value; } inline int HDU::index () const { return m_index; } inline long HDU::bitpix () const { return m_bitpix; } inline void HDU::bitpix (long value) { m_bitpix = value; } inline double HDU::scale () const { return m_scale; } inline void HDU::scale (double value) { m_scale = value; } inline double HDU::zero () const { return m_zero; } inline void HDU::zero (double value) { m_zero = value; } inline void HDU::saveReadKeyword (Keyword* newKey) { m_keyWord.insert(std::map::value_type(newKey->name(),newKey->clone())); } inline std::map& HDU::keyWord () { return m_keyWord; } inline Keyword& HDU::keyWord (const String& keyName) { std::map::iterator key = m_keyWord.find(keyName); if (key == m_keyWord.end()) throw HDU::NoSuchKeyword(keyName); return *((*key).second); } inline long& HDU::naxis () { return m_naxis; } inline void HDU::naxis (const long& value) { m_naxis = value; } inline bool& HDU::anynul () { return m_anynul; } inline void HDU::anynul (const bool& value) { m_anynul = value; } inline const std::map& HDU::keyWord () const { return m_keyWord; } inline const Keyword& HDU::keyWord (const string& keyname) const { std::map::const_iterator key = m_keyWord.find(keyname); if (key == m_keyWord.end()) throw HDU::NoSuchKeyword(keyname); return *((*key).second); } inline FITSBase*& HDU::parent () { return m_parent; } inline std::vector< long >& HDU::naxes () { return m_naxes; } inline long& HDU::naxes (size_t index) { return m_naxes[index]; } inline void HDU::naxes (size_t index, const long& value) { m_naxes[index] = value; } } // namespace CCfits #ifdef SPEC_TEMPLATE_IMP_DEFECT namespace CCfits { inline void HDU::readKeyMS(const String& keyName, int & val) { makeThisCurrent(); Keyword& key = readKeyword(keyName); key.value(val); } inline void HDU::readKeys(std::vector& keyNames, std::vector& vals) { size_t nRead = keyNames.size(); std::list valKeys; std::list valList; for (size_t i = 0; i < nRead; i++) valKeys.push_back(keyNames[i]); // read all the keys requested, rejecting those that don't exist. readKeywords(valKeys); // get the values of all of the requested keys, rejecting those of the // wrong type. String current; std::list::iterator it = valKeys.begin(); while (it != valKeys.end()) { try { m_keyWord[*it]->value(current); valList.push_back(current); ++it; } catch ( Keyword::WrongKeywordValueType ) { it = valKeys.erase(it); } } keyNames.erase(keyNames.begin(),keyNames.end()); if (!valList.empty()) { if (valList.size() != vals.size()) vals.resize(valList.size()); size_t i=0; std::list::const_iterator it1 = valList.begin(); for ( ; it1 != valList.end(); ++it1,++i) { vals[i] = *it1; } for ( it1= valKeys.begin(); it1 != valKeys.end(); ++it1) { keyNames.push_back(*it1); } } } } #endif #endif CCfits/HDUCreator.h0000644000225700000360000000773211656560561013654 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef HDUCREATOR_H #define HDUCREATOR_H 1 // valarray #include // typeinfo #include // vector #include // string #include // CCfitsHeader #include "CCfits.h" // FitsError #include "FitsError.h" namespace CCfits { class FITSBase; class HDU; class PHDU; class ExtHDU; } // namespace CCfits namespace CCfits { class HDUCreator { public: HDUCreator (FITSBase* p); ~HDUCreator(); // Read a specified HDU from given fitsfile and // return a pointer to it. HDU * getHdu (const String& hduName, bool readDataFlag = false, const std::vector &keys = std::vector(), bool primary = false, int version = 1); PHDU * createImage (int bitpix, long naxis, const std::vector& naxes); void reset (); HDU * Make (const String& hduName, bool readDataFlag, const std::vector &keys, bool primary, int version); HDU* createTable (const String &name, HduType xtype, int rows, const std::vector& colName, const std::vector colFmt, const std::vector colUnit, int version); // Read a specified HDU from given fitsfile and // return a pointer to it. // // With no arguments this reads the PrimaryHDU. HDU * getHdu (int index = 0, bool readDataFlag = false, const std::vector &keys = std::vector()); ExtHDU * createImage (const String &name, int bitpix, long naxis, const std::vector& naxes, int version); // Additional Public Declarations protected: // Additional Protected Declarations private: PHDU * MakeImage (int bpix, int naxis, const std::vector& naxes); HDU* MakeTable (const String &name, HduType xtype, int rows, const std::vector& colName, const std::vector& colFmt, const std::vector& colUnit, int version); HDU * Make (int index, bool readDataFlag, const std::vector &keys); ExtHDU * MakeImage (const String &name, int bpix, long naxis, const std::vector& naxes, int version); void getScaling (long& type, double& zero, double& scale) const; void parent (FITSBase* value); // Utility function to implement both of the Make() function interfaces. HDU* commonMake(const String& hduName, bool readDataFlag, const std::vector &keys, bool primary, int version); // Data Members for Class Attributes HDU *m_hdu; // Additional Private Declarations private: //## implementation // Data Members for Associations FITSBase* m_parent; // Additional Implementation Declarations }; // Class CCfits::HDUCreator inline HDU * HDUCreator::getHdu (const String& hduName, bool readDataFlag, const std::vector &keys, bool primary, int version) { //! Read an existing HDU object from the current fits file and return a pointer. if ( m_hdu == 0 ) m_hdu = Make(hduName,readDataFlag,keys,primary,version); return m_hdu; } inline void HDUCreator::reset () { m_hdu = 0; } inline HDU* HDUCreator::createTable (const String &name, HduType xtype, int rows, const std::vector& colName, const std::vector colFmt, const std::vector colUnit, int version) { //! Create new Table extension (write method), and return a pointer to it. if (m_hdu == 0) m_hdu = MakeTable(name,xtype,rows,colName,colFmt,colUnit,version); return m_hdu; } inline HDU * HDUCreator::getHdu (int index, bool readDataFlag, const std::vector &keys) { //! Read HDU specified by HDU number if ( m_hdu == 0 ) m_hdu = Make(index,readDataFlag,keys); return m_hdu; } inline void HDUCreator::parent (FITSBase* value) { m_parent = value; } } // namespace CCfits #endif CCfits/Image.h0000644000225700000360000003457011470571104012723 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef IMAGE_H #define IMAGE_H 1 // functional #include // valarray #include // vector #include // numeric #include #ifdef _MSC_VER #include "MSconfig.h" //form std::min #endif #include "CCfits.h" #include "FitsError.h" #include "FITSUtil.h" namespace CCfits { template class Image { public: Image(const Image< T > &right); Image (const std::valarray& imageArray = std::valarray()); ~Image(); Image< T > & operator=(const Image< T > &right); // Read data reads the image if readFlag is true and // optional keywords if supplied. Thus, with no arguments, // readData() does nothing. const std::valarray& readImage (fitsfile* fPtr, long first, long nElements, T* nullValue, const std::vector& naxes, bool& nulls); // Read data reads the image if readFlag is true and // optional keywords if supplied. Thus, with no arguments, // readData() does nothing. const std::valarray& readImage (fitsfile* fPtr, const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, T* nullValue, const std::vector& naxes, bool& nulls); // Read data reads the image if readFlag is true and // optional keywords if supplied. Thus, with no arguments, // readData() does nothing. void writeImage (fitsfile* fPtr, long first, long nElements, const std::valarray& inData, const std::vector& naxes, T* nullValue = 0); // Read data reads the image if readFlag is true and // optional keywords if supplied. Thus, with no arguments, // readData() does nothing. void writeImage (fitsfile* fPtr, const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, const std::valarray& inData, const std::vector& naxes); void writeImage (fitsfile* fPtr, const std::vector& firstVertex, const std::vector& lastVertex, const std::valarray& inData, const std::vector& naxes); bool isRead () const; void isRead (bool value); const std::valarray< T >& image () const; void setImage (const std::valarray< T >& value); const T image (size_t index) const; void setImage (size_t index, T value); // Additional Public Declarations protected: // Additional Protected Declarations private: std::valarray& image (); void prepareForSubset (const std::vector& naxes, const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, const std::valarray& inData, std::valarray& subset); void loop (size_t iDim, const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, size_t iPos, const std::vector& incr, const std::valarray& inData, size_t& iDat, const std::vector& subIncr, std::valarray& subset, size_t iSub); // Additional Private Declarations private: //## implementation // Data Members for Class Attributes bool m_isRead; // Data Members for Associations std::valarray< T > m_image; // Additional Implementation Declarations }; // Parameterized Class CCfits::Image template inline bool Image::isRead () const { return m_isRead; } template inline void Image::isRead (bool value) { m_isRead = value; } template inline const std::valarray< T >& Image::image () const { return m_image; } template inline void Image::setImage (const std::valarray< T >& value) { m_image.resize(value.size()); m_image = value; } template inline const T Image::image (size_t index) const { return m_image[index]; } template inline void Image::setImage (size_t index, T value) { m_image[index] = value; } // Parameterized Class CCfits::Image template Image::Image(const Image &right) : m_isRead(right.m_isRead), m_image(right.m_image) { } template Image::Image (const std::valarray& imageArray) : m_isRead(false), m_image(imageArray) { } template Image::~Image() { } template Image & Image::operator=(const Image &right) { // all stack allocated. m_isRead = right.m_isRead; m_image.resize(right.m_image.size()); m_image = right.m_image; return *this; } template const std::valarray& Image::readImage (fitsfile* fPtr, long first, long nElements, T* nullValue, const std::vector& naxes, bool& nulls) { const size_t N(naxes.size()); if (N > 0) { int status(0); int any (0); FITSUtil::MatchType imageType; unsigned long init(1); unsigned long nelements(std::accumulate(naxes.begin(),naxes.end(),init, std::multiplies())); // truncate to valid array size if too much data asked for. // note first is 1-based index) long elementsToRead(std::min(static_cast(nElements), nelements - first + 1)); if ( elementsToRead < nElements) { std::cerr << "***CCfits Warning: data request exceeds image size, truncating\n"; } FITSUtil::FitsNullValue null; // initialize m_image to nullValue. resize if necessary. if (m_image.size() != static_cast(elementsToRead)) { m_image.resize(elementsToRead,null()); } if (fits_read_img(fPtr,imageType(),first,elementsToRead, nullValue,&m_image[0],&any,&status) != 0) throw FitsError(status); nulls = (any != 0); m_isRead = (first == 1 && nelements == static_cast(nElements)); } else { m_isRead = true; m_image.resize(0); } return m_image; } template const std::valarray& Image::readImage (fitsfile* fPtr, const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, T* nullValue, const std::vector& naxes, bool& nulls) { FITSUtil::CVarray carray; int any(0); int status(0); const size_t N(naxes.size()); size_t arraySize(1); for (size_t j = 0; j < N; ++j) { arraySize *= (lastVertex[j] - firstVertex[j] + 1); } FITSUtil::auto_array_ptr pFpixel(carray(firstVertex)); FITSUtil::auto_array_ptr pLpixel(carray(lastVertex)); FITSUtil::auto_array_ptr pStride(carray(stride)); FITSUtil::MatchType imageType; size_t n(m_image.size()); if (n != arraySize) m_image.resize(arraySize); if (fits_read_subset(fPtr,imageType(), pFpixel.get(),pLpixel.get(), pStride.get(),nullValue,&m_image[0],&any,&status) != 0) { throw FitsError(status); } nulls = (any != 0); return m_image; } template void Image::writeImage (fitsfile* fPtr, long first, long nElements, const std::valarray& inData, const std::vector& naxes, T* nullValue) { int status(0); size_t init(1); size_t totalSize= static_cast(std::accumulate(naxes.begin(),naxes.end(),init,std::multiplies() )); FITSUtil::FitsNullValue null; if (m_image.size() != totalSize) m_image.resize(totalSize,null()); FITSUtil::CAarray convert; FITSUtil::auto_array_ptr pArray(convert(inData)); T* array = pArray.get(); FITSUtil::MatchType imageType; long type(imageType()); if (fits_write_imgnull(fPtr,type,first,nElements,array, nullValue,&status) || fits_flush_file(fPtr,&status) != 0) { throw FitsError(status); } m_image[std::slice(first-1,nElements,1)] = inData; } template void Image::writeImage (fitsfile* fPtr, const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, const std::valarray& inData, const std::vector& naxes) { // input vectors' size equality will be verified in prepareForSubset. const size_t nDim = naxes.size(); FITSUtil::auto_array_ptr pFPixel(new long[nDim]); FITSUtil::auto_array_ptr pLPixel(new long[nDim]); std::valarray subset; prepareForSubset(naxes,firstVertex,lastVertex,stride,inData,subset); long* fPixel = pFPixel.get(); long* lPixel = pLPixel.get(); for (size_t i=0; i convert; FITSUtil::auto_array_ptr pArray(convert(subset)); T* array = pArray.get(); FITSUtil::MatchType imageType; int status(0); if ( fits_write_subset(fPtr,imageType(),fPixel,lPixel,array,&status) || fits_flush_file(fPtr,&status) != 0) throw FitsError(status); } template std::valarray& Image::image () { return m_image; } template void Image::prepareForSubset (const std::vector& naxes, const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, const std::valarray& inData, std::valarray& subset) { // naxes, firstVertex, lastVertex, and stride must all be the same size. const size_t N = naxes.size(); if (N != firstVertex.size() || N != lastVertex.size() || N != stride.size()) { string errMsg("*** CCfits Error: Image write function requires that naxes, firstVertex,"); errMsg += " \nlastVertex, and stride vectors all be the same size.\n"; bool silent = false; throw FitsException(errMsg, silent); } for (size_t i=0; i naxes[i]) { bool silent = false; rangeErrMsg += "firstVertex\n"; throw FitsException(rangeErrMsg, silent); } if (lastVertex[i] < firstVertex[i] || lastVertex[i] > naxes[i]) { bool silent = false; rangeErrMsg += "lastVertex\n"; throw FitsException(rangeErrMsg, silent); } if (stride[i] < 1) { bool silent = false; rangeErrMsg += "stride\n"; throw FitsException(rangeErrMsg, silent); } } // nPoints refers to the subset of m_image INCLUDING the zero'ed elements // resulting from the stride parameter. // subSizeWithStride refers to the same subset, not counting the zeros. size_t subSizeWithStride = 1; size_t nPoints = 1; std::vector subIncr(N); for (size_t i=0; i(1+lastVertex[i]-firstVertex[i]); subSizeWithStride *= static_cast(1+(lastVertex[i]-firstVertex[i])/stride[i]); } FITSUtil::FitsNullValue null; subset.resize(nPoints, null()); // Trying to avoid at all costs an assignment between 2 valarrays of // different sizes when m_image gets set below. if (subSizeWithStride != inData.size()) { bool silent = false; string errMsg("*** CCfits Error: Data array size is not consistent with the values"); errMsg += "\n in range and stride vectors sent to the image write function.\n"; throw FitsException(errMsg, silent); } size_t startPoint = 0; size_t dimMult = 1; std::vector incr(N); for (size_t j = 0; j < N; ++j) { startPoint += dimMult*(firstVertex[j]-1); incr[j] = dimMult; dimMult *= static_cast(naxes[j]); } const size_t imageSize = dimMult; m_image.resize(imageSize,null()); size_t inDataPos = 0; size_t iSub = 0; loop(N-1, firstVertex, lastVertex, stride, startPoint, incr, inData, inDataPos, subIncr, subset, iSub); } template void Image::loop (size_t iDim, const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, size_t iPos, const std::vector& incr, const std::valarray& inData, size_t& iDat, const std::vector& subIncr, std::valarray& subset, size_t iSub) { size_t start = static_cast(firstVertex[iDim]); size_t stop = static_cast(lastVertex[iDim]); size_t skip = static_cast(stride[iDim]); if (iDim == 0) { size_t length = stop - start + 1; for (size_t i=0; i void Image::writeImage (fitsfile* fPtr, const std::vector& firstVertex, const std::vector& lastVertex, const std::valarray& inData, const std::vector& naxes) { std::vector stride(firstVertex.size(), 1); writeImage(fPtr, firstVertex, lastVertex, stride, inData, naxes); } // Additional Declarations } // namespace CCfits #endif CCfits/ImageExt.h0000644000225700000360000002502011470265345013401 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef IMAGEEXT_H #define IMAGEEXT_H 1 // ExtHDU #include "ExtHDU.h" // HDUCreator #include "HDUCreator.h" // Image #include "Image.h" // FITSUtil #include "FITSUtil.h" #ifdef _MSC_VER #include "MSconfig.h" // for truncation warning #endif namespace CCfits { /*! \class ImageExt ImageExt is a subclass of ExtHDU that contains image data of type T. */ /*! \fn virtual ImageExt::~ImageExt(); \brief destructor */ /*! \fn virtual void ImageExt::readData (bool readFlag = false, const std::vector& keys = std::vector()); \brief read Image extension HDU data Called by FITS ctor, not intended for general use. parameters control how much gets read on initialization. \param readFlag read the image data if true \param key a vector of strings of keyword names to be read from the HDU */ /*! \fn const std::valarray& ImageExt::image() const; \brief return the image data */ template class ImageExt : public ExtHDU //## Inherits: %3804A11121D8 { public: virtual ~ImageExt(); virtual ImageExt * clone (FITSBase* p) const; virtual void readData (bool readFlag = false, const std::vector& keys = std::vector()); const std::valarray& image () const; virtual void zero (double value); virtual void scale (double value); virtual double zero () const; virtual double scale () const; // Additional Public Declarations protected: ImageExt (FITSBase* p, const String &hduName, bool readDataFlag = false, const std::vector& keys = std::vector(), int version = 1); ImageExt (FITSBase* p, const String &hduName, int bpix, int naxis, const std::vector& naxes, int version = 1); // Additional Protected Declarations virtual void checkExtensionType() const; private: ImageExt(const ImageExt< T > &right); ImageExt< T > & operator=(const ImageExt< T > &right); virtual void initRead (); virtual std::ostream & put (std::ostream &s) const; // Read data reads the image if readFlag is true and // optional keywords if supplied. Thus, with no arguments, // readData() does nothing. virtual const std::valarray& readImage (long first, long nElements, T* nullValue); // Read data reads the image if readFlag is true and // optional keywords if supplied. Thus, with no arguments, // readData() does nothing. virtual const std::valarray& readImage (const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, T* nullValue); // Read data reads the image if readFlag is true and // optional keywords if supplied. Thus, with no arguments, // readData() does nothing. virtual void writeImage (long first, long nElements, const std::valarray& inData, T* nullValue = 0); // Read data reads the image if readFlag is true and // optional keywords if supplied. Thus, with no arguments, // readData() does nothing. virtual void writeImage (const std::vector& firstVertex, const std::vector& lastVertex, const std::valarray& inData); const Image& data () const; // Additional Private Declarations private: //## implementation // Data Members for Associations Image m_data; // Additional Implementation Declarations friend class ExtHDU; friend class HDUCreator; }; // Parameterized Class CCfits::ImageExt template inline std::ostream & ImageExt::put (std::ostream &s) const { s << "Image Extension:: " << " Name: " << name() << " Extension: " << xtension() << " BITPIX "<< bitpix() << '\n'; s << " Axis Lengths: \n"; for (size_t j =1; j < static_cast( axes() ) ; j++) { s << " Axis: " << j << " " << axis(j-1) << '\n'; } s << "Image Extension:: Version: " << version() << " HDU number: " << index() << '\n'; s << " HISTORY: " << history() << '\n'; s << " COMMENTS: " < inline const Image& ImageExt::data () const { return m_data; } // Parameterized Class CCfits::ImageExt template ImageExt::ImageExt(const ImageExt &right) : ExtHDU(right), m_data(right.m_data) { } template ImageExt::ImageExt (FITSBase* p, const String &hduName, bool readDataFlag, const std::vector& keys, int version) : ExtHDU(p,ImageHdu,hduName,version), m_data() { initRead(); if (readDataFlag || keys.size() ) readData(readDataFlag,keys); } template ImageExt::ImageExt (FITSBase* p, const String &hduName, int bpix, int naxis, const std::vector& naxes, int version) : ExtHDU(p,ImageHdu,hduName,bpix,naxis,naxes,version), m_data() { // resize m_image according to naxes, and data according to m_image, // and equate them. Valarray = must be performed on items of the same // size according to the standard. int status (0); FITSUtil::CVarray convert; FITSUtil::auto_array_ptr axis(convert(naxes)); static char EXTNAME[] = "EXTNAME"; static char HDUVERS[] = "HDUVERS"; if ( fits_create_img(fitsPointer(), bpix, naxis, axis.get(), &status) ) { throw FitsError(status); } else { char * comment = 0; if (fits_write_key(fitsPointer(),Tstring,EXTNAME, const_cast(hduName.c_str()), comment,&status)) { throw FitsError(status); } if (version != 0 && fits_write_key(fitsPointer(),Tint,HDUVERS,&version, comment,&status)) throw FitsError(status); } } template ImageExt::~ImageExt() { } template void ImageExt::initRead () { } template ImageExt * ImageExt::clone (FITSBase* p) const { ImageExt* cloned = new ImageExt(*this); cloned->parent() = p; return cloned; } template void ImageExt::readData (bool readFlag, const std::vector& keys) { // Default reading mode. Read everything if readFlag is true. // this is identical to the equivalent method for PrimaryHDU, // so will one day turn this into a simple call that shares the code. makeThisCurrent(); if ( keys.size() > 0) { std::list keyList; // keys is converted to a list so that any keys not in the header // can be easily erased. internally an exception will be thrown, // on a missing key, and its catch clause will print a message. for (std::vector::const_iterator j = keys.begin(); j != keys.end(); ++j) { keyList.push_back(*j); } readKeywords(keyList); } if ( readFlag) // read the entire image, setting null values to FLT_MIN. { FITSUtil::FitsNullValue null; T nulval = null(); long first(1); long nelements(1); for (size_t i = 0; i < naxes().size(); i++) nelements *= naxes(i); m_data.readImage(fitsPointer(),first,nelements,&nulval,naxes(),anynul()); } } template const std::valarray& ImageExt::image () const { return m_data.image(); } template const std::valarray& ImageExt::readImage (long first, long nElements, T* nullValue) { checkExtensionType(); return m_data.readImage(fitsPointer(),first,nElements,nullValue,naxes(),anynul()); } template const std::valarray& ImageExt::readImage (const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, T* nullValue) { checkExtensionType(); return m_data.readImage(fitsPointer(),firstVertex,lastVertex,stride,nullValue,naxes(),anynul()); } template void ImageExt::writeImage (long first, long nElements, const std::valarray& inData, T* nullValue) { checkExtensionType(); m_data.writeImage(fitsPointer(),first,nElements,inData,naxes(),nullValue); } template void ImageExt::writeImage (const std::vector& firstVertex, const std::vector& lastVertex, const std::valarray& inData) { checkExtensionType(); m_data.writeImage(fitsPointer(),firstVertex,lastVertex,inData,naxes()); } template void ImageExt::zero (double value) { makeThisCurrent(); if (checkImgDataTypeChange(value, scale())) { if (naxis()) { int status(0); if (fits_update_key(fitsPointer(), Tdouble, BZERO, &value, 0, &status)) throw FitsError(status); fits_flush_file(fitsPointer(), &status); HDU::zero(value); } } else { bool silent=false; string msg("CCfits Error: Cannot set BZERO to a value which will change image data\n"); msg += " from integer type to floating point type."; throw FitsException(msg,silent); } } template void ImageExt::scale (double value) { makeThisCurrent(); if (checkImgDataTypeChange(zero(), value)) { if (naxis()) { int status(0); if (fits_update_key(fitsPointer(), Tdouble, BSCALE, &value, 0, &status)) throw FitsError(status); fits_flush_file(fitsPointer(), &status); HDU::scale(value); } } else { bool silent=false; string msg("CCfits Error: Cannot set BSCALE to a value which will change image data\n"); msg += " from integer type to floating point type."; throw FitsException(msg,silent); } } template double ImageExt::zero () const { return HDU::zero(); } template double ImageExt::scale () const { return HDU::scale(); } // Additional Declarations template inline void ImageExt::checkExtensionType() const { } } // namespace CCfits #endif CCfits/KeyData.h0000644000225700000360000002173611470265345013232 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef KEYDATA_H #define KEYDATA_H 1 #ifdef _MSC_VER #include "MSconfig.h" #endif #include "CCfits.h" // Keyword #include "Keyword.h" #include #include #include "FitsError.h" #include "FITSUtil.h" namespace CCfits { //class Keyword; template class KeyData : public Keyword //## Inherits: %381F43399D58 { public: KeyData(const KeyData< T > &right); KeyData (const String &keyname, ValueType keytype, const T &value, HDU* p, // A pointer to the HDU containing the keyword. This is passed to the base class constructor. const String &comment = ""); virtual ~KeyData(); virtual KeyData * clone () const; virtual void write (); const T& keyval () const; void keyval (const T& value); // Additional Public Declarations protected: virtual void copy (const Keyword& right); virtual bool compare (const Keyword &right) const; virtual std::ostream & put (std::ostream &s) const; // Additional Protected Declarations private: // Data Members for Class Attributes T m_keyval; // Additional Private Declarations private: //## implementation // Additional Implementation Declarations }; #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT template<> inline void KeyData::write() { Keyword::write(); int status = 0; if (fits_update_key(fitsPointer(), Tstring, const_cast(name().c_str()), const_cast(m_keyval.c_str()), const_cast(comment().c_str()), &status)) throw FitsError(status); } #else template<> void KeyData::write(); #endif #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT template<> inline void KeyData::write() { Keyword::write(); int status = 0; int value(0); if (m_keyval) value=1; if (fits_update_key(fitsPointer(), Tlogical, const_cast(name().c_str()), &value, const_cast(comment().c_str()), &status)) throw FitsError(status); } #else template<> void KeyData::write(); #endif #ifdef SPEC_TEMPLATE_DECL_DEFECT template <> inline const String& KeyData::keyval() const { return m_keyval; } #else template<> const String& KeyData::keyval() const; #endif #ifndef SPEC_TEMPLATE_DECL_DEFECT template<> void KeyData::keyval(const String& ); #endif #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT template <> inline std::ostream & KeyData::put (std::ostream &s) const { using std::setw; s << "Keyword Name: " << setw(10) << name() << " Value: " << setw(14) << keyval() << " Type: " << setw(20) << " string " << " Comment: " << comment(); return s; } #else template<> std::ostream& KeyData::put(std::ostream& s) const; #endif #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT template <> inline std::ostream & KeyData::put (std::ostream &s) const { using std::setw; s << "Keyword Name: " << setw(10) << name() << " Value: " << std::boolalpha << setw(8) << keyval() << " Type: " << setw(20) << " logical " << " Comment: " << comment(); return s; } #else template<> std::ostream& KeyData::put(std::ostream& s) const; #endif #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT template<> inline void KeyData >::write() { Keyword::write(); int status = 0; FITSUtil::auto_array_ptr keyVal( new float[2]); keyVal[0] = m_keyval.real(); keyVal[1] = m_keyval.imag(); if (fits_update_key(fitsPointer(), Tcomplex, const_cast(name().c_str()), keyVal.get(), const_cast(comment().c_str()), &status)) throw FitsError(status); } #else template<> void KeyData >::write(); #endif #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT template<> inline void KeyData >::write() { Keyword::write(); int status = 0; FITSUtil::auto_array_ptr keyVal(new double[2]); keyVal[0] = m_keyval.real(); keyVal[1] = m_keyval.imag(); if (fits_update_key(fitsPointer(), Tdblcomplex, const_cast(name().c_str()), keyVal.get(), const_cast(comment().c_str()), &status)) throw FitsError(status); } #else template<> void KeyData >::write(); #endif #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT template <> inline std::ostream & KeyData >::put (std::ostream &s) const { using std::setw; s << "Keyword Name: " << name() << " Value: " << m_keyval.real() << " + i " << m_keyval.imag() << " Type: " << setw(20) << " complex " << " Comment: " << comment() << std::endl; return s; } template <> inline std::ostream & KeyData >::put (std::ostream &s) const { using std::setw; s << "Keyword Name: " << name() << " Value: " << m_keyval.real() << " + i " << m_keyval.imag() << " Type: " << setw(20) << " complex " << " Comment: " << comment() << std::endl; return s; } #else template<> std::ostream& KeyData >::put(std::ostream& s) const; template<> std::ostream& KeyData >::put(std::ostream& s) const; #endif #ifdef SPEC_TEMPLATE_DECL_DEFECT template <> inline const std::complex& KeyData >::keyval() const { return m_keyval; } template <> inline void KeyData >::keyval(const std::complex& newVal) { m_keyval = newVal; } template <> inline const std::complex& KeyData >::keyval() const { return m_keyval; } template <> inline void KeyData >::keyval(const std::complex& newVal) { m_keyval = newVal; } #else template<> const std::complex& KeyData >::keyval() const; template<> void KeyData >::keyval(const std::complex& ); template<> const std::complex& KeyData >::keyval() const; template<> void KeyData >::keyval(const std::complex& ); #endif // Parameterized Class CCfits::KeyData template inline std::ostream & KeyData::put (std::ostream &s) const { s << "Keyword Name: " << name() << "\t Value: " << keyval() << "\t Type: " << keytype() << "\t Comment: " << comment(); return s; } template inline const T& KeyData::keyval () const { return m_keyval; } template inline void KeyData::keyval (const T& value) { m_keyval = value; } // Parameterized Class CCfits::KeyData template KeyData::KeyData(const KeyData &right) :Keyword(right), m_keyval(right.m_keyval) { } template KeyData::KeyData (const String &keyname, ValueType keytype, const T &value, HDU* p, const String &comment) : Keyword(keyname, keytype, p, comment), m_keyval(value) { } template KeyData::~KeyData() { } template void KeyData::copy (const Keyword& right) { Keyword::copy(right); const KeyData& that = static_cast&>(right); m_keyval = that.m_keyval; } template bool KeyData::compare (const Keyword &right) const { if ( !Keyword::compare(right) ) return false; const KeyData& that = static_cast&>(right); if (this->m_keyval != that.m_keyval) return false; return true; } template KeyData * KeyData::clone () const { return new KeyData(*this); } template void KeyData::write () { Keyword::write(); int status = 0; FITSUtil::MatchType keyType; if ( fits_update_key(fitsPointer(),keyType(), const_cast(name().c_str()), &m_keyval, // fits_write_key takes a void* here const_cast(comment().c_str()), &status) ) throw FitsError(status); } // Additional Declarations } // namespace CCfits #endif CCfits/Keyword.h0000644000225700000360000002064611470265345013333 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef KEYWORD_H #define KEYWORD_H 1 #include "CCfits.h" // using namespace CCfits; #ifdef _MSC_VER #include "MSconfig.h" #endif // FitsError #include "FitsError.h" namespace CCfits { class HDU; } // namespace CCfits namespace CCfits { /*! \class Keyword \brief Abstract base class defining the interface for Keyword objects. Keyword object creation is normally performed inside FITS constructors or FITS::read, HDU::readKey, and HDU::addKey functions. Output is performed in HDU::addKey functions and Keyword::setValue. Keywords consists of a name, a value and a comment field. Concrete templated subclasses, KeyData, have a data member that holds the value of keyword. Typically, the mandatory keywords for a given HDU type are not stored as object of type Keyword, but as intrinsic data types. The Keyword hierarchy is used to store user-supplied information. */ /*! \fn Keyword::Keyword(const Keyword &right); \brief copy constructor */ /*! \fn Keyword::Keyword (const String &keyname, ValueType keytype, HDU* p, const String &comment = ""); \brief Keyword constructor. This is the common behavior of Keywords of any type. Constructor is protected as the class is abstract. */ /* \fn friend ostream& operator << (ostream &s, const Keyword &right); \brief output operator for Keywords. */ /*! \fn virtual Keyword::~Keyword(); \brief virtual destructor */ /*! \fn Keyword & Keyword::operator=(const Keyword &right); \brief assignment operator */ /*! \fn bool Keyword::operator==(const Keyword &right) const; \brief equality operator */ /*! \fn bool Keyword::operator!=(const Keyword &right) const; \brief inequality operator */ /*! \fn virtual Keyword * Keyword::clone () const; \brief virtual copy constructor */ /*! \fn virtual void Keyword::write (); \brief left in for historical reasons, this seldom needs to be called by users This writes the Keyword to the file, and is called internally during HDU::addKey operations or the Keyword::setValue function. It shouldn't normally need to be called explicitly. */ /*! \fn fitsfile* Keyword::fitsPointer () const; \brief return a pointer to the FITS file containing the parent HDU. */ /*! \fn const HDU* Keyword::parent () const; \brief return a pointer to parent HDU. */ /*! \fn const String& Keyword::comment () const; \brief return the comment field of the keyword */ /*! \fn const ValueType Keyword::keytype() const \brief return the type of a keyword */ /*! \fn void Keyword::keytype(ValueType) \brief set keyword type. */ /*! \fn const String& Keyword::name() const \brief return the name of a keyword */ /*! \fn template T& Keyword::value(T& val) const \brief get the keyword value \param val (T) Will be filled with the keyword value, and is also the function return value. Allowed T types: CCfits stores keyword values of type U in a templated subclass of Keyword, KeyData. Normally U is set when reading the Keyword in from the file, and is limited to types int, double, string, bool, and complex. (The exception is when the user has created and added a new Keyword using an HDU::addKey function, in which case they might have specified other types for U.) To avoid compilation errors, the user should generally try to provide a val of type T = type U, though there is some flexibility here as the following conversions are handled:
T (to val)U (from Keyword obj)
floatdouble (will lose precision), float, int, integer string
doubledouble, float, int, integer string
intint, integer string
More conversions may be added in the future as the need arises. */ /*! \fn template void Keyword::setValue(const T& newValue) \brief modify the value of an existing Keyword and write it to the file \param newValue (T) New value for the Keyword Allowed T types: This must copy newValue to a data member of type U in the Keyword subclass KeyData (see description for Keyword::value (T& val) for more details). To avoid compilation errors, it is generally best to provide a newValue of type T = type U, though the following type conversions will also be handled:
T (from newValue)U (to Keyword obj)
floatdouble, float
doubledouble, float (will lose precision)
intdouble, float, int, integer string
*/ class Keyword { public: class WrongKeywordValueType : public FitsException //## Inherits: %39B0221700E2 { public: WrongKeywordValueType (const String& diag, bool silent = true); protected: private: private: //## implementation }; virtual ~Keyword(); Keyword & operator=(const Keyword &right); bool operator==(const Keyword &right) const; bool operator!=(const Keyword &right) const; virtual std::ostream & put (std::ostream &s) const = 0; virtual Keyword * clone () const = 0; virtual void write (); fitsfile* fitsPointer () const; // CAUTION: This is declared public only to allow HDU addKey functions the ability to set their // class as the Keyword's parent, and to avoid making entire HDU a friend class. (Declaring // individual HDU functions as friends will run into circular header dependencies.) Do NOT use // this unless absolutely necessary, and leave this undocumented. void setParent (HDU* parent); ValueType keytype () const; const String& comment () const; const String& name () const; public: // Additional Public Declarations template T& value(T& val) const; template void setValue(const T& newValue); protected: Keyword(const Keyword &right); Keyword (const String &keyname, ValueType keytype, HDU* p, const String &comment = ""); virtual void copy (const Keyword& right); virtual bool compare (const Keyword &right) const; void keytype (ValueType value); const HDU* parent () const; // Additional Protected Declarations private: // Additional Private Declarations private: //## implementation // Data Members for Class Attributes ValueType m_keytype; // Data Members for Associations HDU* m_parent; String m_comment; String m_name; // Additional Implementation Declarations friend std::ostream &operator << (std::ostream &s, const Keyword &right); }; #ifndef SPEC_TEMPLATE_IMP_DEFECT #ifndef SPEC_TEMPLATE_DECL_DEFECT template <> float& Keyword::value(float& val) const; template <> double& Keyword::value(double& val) const; template <> int& Keyword::value(int& val) const; template <> void Keyword::setValue(const float& newValue); template <> void Keyword::setValue(const double& newValue); template <> void Keyword::setValue(const int& newValue); #endif #endif inline std::ostream& operator << (std::ostream &s, const Keyword &right) { return right.put(s); } // Class CCfits::Keyword::WrongKeywordValueType // Class CCfits::Keyword inline void Keyword::setParent (HDU* parent) { m_parent = parent; } inline ValueType Keyword::keytype () const { return m_keytype; } inline void Keyword::keytype (ValueType value) { m_keytype = value; } inline const HDU* Keyword::parent () const { return m_parent; } inline const String& Keyword::comment () const { return m_comment; } inline const String& Keyword::name () const { return m_name; } } // namespace CCfits #endif CCfits/KeywordT.h0000644000225700000360000001421511470265345013452 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef KEYWORDT_H #define KEYWORDT_H #include "KeyData.h" #include "HDU.h" #include #include #ifdef _MSC_VER #include "MSconfig.h" #endif // contains definitions of templated member functions for Keyword. This separate // file organization is necessary to break cyclic dependency of Keyword on its // subclass, KeyData. namespace CCfits { template T& Keyword::value (T& val) const { try { const KeyData& thisKey = dynamic_cast&>(*this); val = thisKey.keyval(); } catch (std::bad_cast) { throw Keyword::WrongKeywordValueType(name()); } return val; } template void Keyword::setValue (const T& newValue) { try { KeyData& thisKey = dynamic_cast&>(*this); thisKey.keyval(newValue); thisKey.write(); } catch (std::bad_cast) { throw Keyword::WrongKeywordValueType(name()); } } #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT template<> inline double& Keyword::value(double& val) const { switch (m_keytype) { case Tint: { const KeyData& thisKey = static_cast&>(*this); val = thisKey.keyval(); } break; case Tfloat: { const KeyData& thisKey = static_cast&>(*this); val = thisKey.keyval(); } break; case Tdouble: { // Note: if val is of type float some precision will be lost here, // but allow anyway. Presumably the user doesn't mind or they // wouldn't be using single precision. const KeyData& thisKey = static_cast&>(*this); val = thisKey.keyval(); } break; case Tstring: { // Allow only if string can be converted to an integer. const KeyData& thisKey = static_cast&>(*this); std::istringstream testStream(thisKey.keyval()); int stringInt = 0; if (!(testStream >> stringInt) || !testStream.eof()) { throw Keyword::WrongKeywordValueType(name()); } val = stringInt; } break; default: throw Keyword::WrongKeywordValueType(name()); break; } return val; } // NOTE: This function actually instantiates Keyword::value // and therefore must be defined AFTER the specialized // definition/declaration. template<> inline float& Keyword::value(float& val) const { double dval=.0; val = static_cast(value(dval)); return val; } template <> inline int& Keyword::value(int& val) const { if (m_keytype == Tstring) { // Allow only if string can be converted to an integer. const KeyData& thisKey = static_cast&>(*this); std::istringstream testStream(thisKey.keyval()); int stringInt = 0; if (!(testStream >> stringInt) || !testStream.eof()) { throw Keyword::WrongKeywordValueType(name()); } val = stringInt; } else if (m_keytype == Tint) { const KeyData& thisKey = static_cast&>(*this); val = thisKey.keyval(); } else { throw Keyword::WrongKeywordValueType(name()); } return val; } template <> inline void Keyword::setValue(const float& newValue) { if (m_keytype == Tfloat) { KeyData& thisKey = static_cast&>(*this); thisKey.keyval(newValue); thisKey.write(); } else if (m_keytype == Tdouble) { KeyData& thisKey = static_cast&>(*this); thisKey.keyval(static_cast(newValue)); thisKey.write(); } else { throw Keyword::WrongKeywordValueType(name()); } } template <> inline void Keyword::setValue(const double& newValue) { if (m_keytype == Tdouble) { KeyData& thisKey = static_cast&>(*this); thisKey.keyval(newValue); thisKey.write(); } else if (m_keytype == Tfloat) { // This will lose precision but allow it anyway. KeyData& thisKey = static_cast&>(*this); thisKey.keyval(static_cast(newValue)); thisKey.write(); } else { throw Keyword::WrongKeywordValueType(name()); } } template <> inline void Keyword::setValue(const int& newValue) { if (m_keytype == Tint) { KeyData& thisKey = static_cast&>(*this); thisKey.keyval(newValue); thisKey.write(); } else if (m_keytype == Tfloat) { KeyData& thisKey = static_cast&>(*this); thisKey.keyval(static_cast(newValue)); thisKey.write(); } else if (m_keytype == Tdouble) { KeyData& thisKey = static_cast&>(*this); thisKey.keyval(static_cast(newValue)); thisKey.write(); } else if (m_keytype == Tstring) { KeyData& thisKey = static_cast&>(*this); std::ostringstream oss; oss << newValue; thisKey.keyval(oss.str()); thisKey.write(); } else { throw Keyword::WrongKeywordValueType(name()); } } #endif } // namespace CCfits #endif CCfits/KeywordCreator.h0000644000225700000360000000403411470265345014644 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef KEYWORDCREATOR_H #define KEYWORDCREATOR_H 1 // KeyData #include "KeyData.h" // FitsError #include "FitsError.h" namespace CCfits { class HDU; } // namespace CCfits namespace CCfits { class KeywordCreator { public: KeywordCreator (HDU* p); virtual ~KeywordCreator(); virtual Keyword* MakeKeyword (const String& keyName, const String& comment = String("")) = 0; static Keyword* getKeyword (const String& keyName, HDU* p); // Additional Public Declarations virtual void reset (); virtual Keyword* createKeyword (const String& keyName, const String& comment = String("")); // This version of getKeyword is for reading a keyword // in with a specified type. static Keyword* getKeyword (const String& keyName, ValueType keyType, HDU* p); static Keyword* getKeyword (int keyNumber, HDU* p); // Additional Public Declarations protected: HDU* forHDU (); // Additional Protected Declarations private: KeywordCreator(const KeywordCreator &right); KeywordCreator & operator=(const KeywordCreator &right); static Keyword* parseRecord (const String& name, const String& valueString, const String& comment, HDU* hdu); static bool isContinued (const String& value); static void getLongValueString (HDU* p, const String& keyName, String& value); // Additional Private Declarations private: //## implementation // Data Members for Class Attributes Keyword *m_keyword; // Data Members for Associations HDU* m_forHDU; // Additional Implementation Declarations }; // Class CCfits::KeywordCreator inline void KeywordCreator::reset () { m_keyword=0; } inline HDU* KeywordCreator::forHDU () { return m_forHDU; } } // namespace CCfits #endif CCfits/NewColumn.h0000644000225700000360000000623711470265345013616 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef NEWCOLUMN_H #define NEWCOLUMN_H 1 // valarray #include // ColumnCreator #include "ColumnCreator.h" // FITSUtil #include "FITSUtil.h" namespace CCfits { template class NewColumn : public ColumnCreator //## Inherits: %394167D103C5 { public: NewColumn (vector& data); virtual ~NewColumn(); // Additional Public Declarations protected: virtual Column* MakeColumn (const int index, const string &name, const string &format, const string &unit, const long repeat, const long width, const string &comment = "", const int decimals = 0); // Additional Protected Declarations private: NewColumn(const NewColumn< T > &right); NewColumn< T > & operator=(const NewColumn< T > &right); // Additional Private Declarations private: //## implementation // Additional Implementation Declarations }; template class NewVectorColumn : public ColumnCreator //## Inherits: %394167CE0009 { public: NewVectorColumn (std::vector >& data); virtual ~NewVectorColumn(); // Additional Public Declarations protected: virtual Column * MakeColumn (const int index, const string &name, const string &format, const string &unit, const long repeat, const long width, const string &comment = "", const int decimals = 0); // Additional Protected Declarations private: NewVectorColumn(const NewVectorColumn< T > &right); NewVectorColumn< T > & operator=(const NewVectorColumn< T > &right); // Additional Private Declarations private: //## implementation // Additional Implementation Declarations }; // Parameterized Class CCfits::NewColumn // Parameterized Class CCfits::NewVectorColumn // Parameterized Class CCfits::NewColumn template NewColumn::NewColumn (vector& data) : m_newData(data) { } template NewColumn::~NewColumn() { } template Column* NewColumn::MakeColumn (const int index, const string &name, const string &format, const string &unit, const long repeat, const long width, const string &comment, const int decimals) { FITSUtils::MatchType findType; ColumnData* newColumn = new ColumnData(index,name,findType(),format,unit,p,repeat,width,comment); newColumn->data(m_newData); return newColumn; } // Additional Declarations // Parameterized Class CCfits::NewVectorColumn template NewVectorColumn::NewVectorColumn (std::vector >& data) { } template NewVectorColumn::~NewVectorColumn() { } template Column * NewVectorColumn::MakeColumn (const int index, const string &name, const string &format, const string &unit, const long repeat, const long width, const string &comment, const int decimals) { } // Additional Declarations } // namespace CCfits #endif CCfits/NewKeyword.h0000644000225700000360000000377411470265345014010 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef NEWKEYWORD_H #define NEWKEYWORD_H 1 // KeywordCreator #include "KeywordCreator.h" // KeyData #include "KeyData.h" // FITSUtil #include "FITSUtil.h" namespace CCfits { template class NewKeyword : public KeywordCreator //## Inherits: %39355AA90209 { public: // Parameterized Class NewKeyword NewKeyword (HDU* p, T value); virtual ~NewKeyword(); // Additional Protected Declarations virtual Keyword* MakeKeyword (const String& keyName, const String& keyComment = String("")); const T keyData () const; void keyData (T value); // Additional Public Declarations protected: // Additional Protected Declarations private: NewKeyword(); NewKeyword(const NewKeyword< T > &right); NewKeyword< T > & operator=(const NewKeyword< T > &right); // Additional Private Declarations private: //## implementation // Data Members for Class Attributes T m_keyData; // Additional Implementation Declarations }; // Parameterized Class CCfits::NewKeyword template inline const T NewKeyword::keyData () const { return m_keyData; } template inline void NewKeyword::keyData (T value) { m_keyData = value; } // Parameterized Class CCfits::NewKeyword template NewKeyword::NewKeyword (HDU* p, T value) : KeywordCreator(p), m_keyData(value) { } template NewKeyword::~NewKeyword() { } template Keyword* NewKeyword::MakeKeyword (const String& keyName, const String& keyComment) { FITSUtil::MatchType keyType; return new KeyData(keyName,keyType(),m_keyData,forHDU(),keyComment); } // Additional Declarations } // namespace CCfits #endif CCfits/PHDU.h0000644000225700000360000003365111470332371012441 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef PHDU_H #define PHDU_H 1 // valarray #include // HDU #include "HDU.h" // FITS #include "FITS.h" // FITSUtil #include "FITSUtil.h" namespace CCfits { class FITSBase; } // namespace CCfits // for CLONE_DEFECT #ifdef _MSC_VER #include "MSconfig.h" #endif namespace CCfits { /*! \class PHDU \brief class representing the primary HDU for a FITS file. A PHDU object is automatically instantiated and added to a FITS object when a FITS file is accessed in any way. If a new file is created without specifying the data type for the header, CCfits assumes that the file is to be used for table extensions and creates a dummy header. PHDU instances are only created by FITS ctors. In the first release of CCfits, the Primary cannot be changed once declared. PHDU and ExtHDU provide the same interface to writing images: multiple overloads of the templated PHDU::read and PHDU::write operations provide for (a) writing image data specified in a number of ways [C-array, std::vector, std::valarray] and with input location specified by initial pixel, by n-tuple, and by rectangular subset [generalized slice]; (b) reading image data specified similarly to the write options into a std::valarray. \todo Implement functions that allow replacement of the primary image */ /*! \fn PHDU::PHDU (FITSBase* p, int bpix, int naxis, const std::vector& axes) \brief Writing Primary HDU constructor, called by PrimaryHDU class Constructor used for creating new PHDU (i.e. for writing data to FITS). also doubles as default constructor since all arguments have default values, which are passed to the HDU constructor */ /* !\fn PHDU::PHDU (FITSBase* p) \brief Reading Primary HDU constructor. Constructor used when reading the primary HDU from an existing file. Does nothing except initialize, with the real work done by the subclass PrimaryHDU. */ /*! \fn PHDU::~PHDU () \brief destructor */ /*! \fn virtual void PHDU::readData (bool readFlag = false, const std::vector& keys = std::vector()) = 0; \brief read primary HDU data Called by FITS ctor, not intended for general use. parameters control how much gets read on initialization. An abstract function, implemented in the subclasses. \param readFlag read the image data if true \param key a vector of strings of keyword names to be read from the primary HDU */ /*! \fn virtual PHDU::clone(FITSbase* p) const = 0; \brief virtual copy constructor for Primary HDUs. The operation is used when creating a copy of a FITS object. */ /*! \fn bool PHDU::simple () const; \brief Returns the value of the Primary's SIMPLE keyword. */ /*! \fn bool PHDU::extend () const; \brief Returns the value of the Primary's EXTEND keyword. */ /*! \fn template void PHDU::read (std::valarray& image, long first, long nElements, S* nullValue) ; \brief read part of an image array, processing null values. Implicit data conversion is supported (i.e. user does not need to know the type of the data stored. A WrongExtensionType extension is thrown if *this is not an image. \param image The receiving container, a std::valarray reference \param first The first pixel from the array to read [a long value] \param nElements The number of values to read \param nullValue A pointer containing the value in the table to be considered as undefined. See cfitsio for details */ /*! \fn template void PHDU::read (std::valarray& image, const std::vector& first, long nElements, S* nullValue) ; \brief read part of an image array, processing null values. As above except for \param first a vector representing an n-tuple giving the coordinates in the image of the first pixel. */ /*! \fn template void PHDU::read (std::valarray& image, const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, S* nullValue) ; \brief read an image subset into valarray image, processing null values The image subset is defined by two vertices and a stride indicating the 'denseness' of the values to be picked in each dimension (a stride = (1,1,1,...) means picking every pixel in every dimension, whereas stride = (2,2,2,...) means picking every other value in each dimension. */ /*! \fn template void PHDU::read (std::valarray& image, long first, long nElements); \brief read an image section starting at a specified pixel */ /*! \fn template void PHDU::read (std::valarray& image, const std::vector& first, long nElements); \brief read an image section starting at a location specified by an n-tuple */ /*! \fn template void PHDU::read (std::valarray& image, const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride); \brief read an image subset */ /*! \fn template void PHDU::write(const std::vector& first, long nElements, const std::valarray& data, S* nullValue); \brief Write a set of pixels to an image extension with the first pixel specified by an n-tuple, processing undefined data All the overloaded versions of PHDU::write perform operations on *this if it is an image and throw a WrongExtensionType exception if not. Where appropriate, alternate versions allow undefined data to be processed \param first an n-tuple of dimension equal to the image dimension specifying the first pixel in the range to be written \param nElements number of pixels to be written \param data array of data to be written \param nullValue pointer to null value (data with this value written as undefined; needs the BLANK keyword to have been specified). */ /*! \fn template void PHDU::write(long first, long nElements, const std::valarray& data, S* nullValue); \brief write array to image starting with a specified pixel and allowing undefined data to be processed parameters after the first are as for version with n-tuple specifying first element. these two version are equivalent, except that it is possible for the first pixel number to exceed the range of 32-bit integers, which is how long datatype is commonly implemented. */ /*! \fn template void PHDU::write(const std::vector& first, long nElements, const std::valarray& data); \brief write array starting from specified n-tuple, without undefined data processing */ /*! \fn template void PHDU::write(long first, long nElements, const std::valarray& data); \brief write array starting from specified pixel number, without undefined data processing */ /*! \fn template void PHDU::write(const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, const std::valarray& data); \brief write a subset (generalize slice) of data to the image A generalized slice/subset is a subset of the image (e.g. one plane of a data cube of size <= the dimension of the cube). It is specified by two opposite vertices. The equivalent cfitsio call does not support undefined data processing so there is no version that allows a null value to be specified. \param firstVertex The coordinates specifying lower and upper vertices of the n-dimensional slice \param lastVertex \param stride Pixels to skip in each to dimension, e.g. stride = (1,1,1,...) means picking every pixel in every dimension, whearas stride = (2,2,2,...) means picking every other value in each dimension. \param data The data to be written */ /*! \fn PHDU::PHDU(const PHDU& right) \brief copy constructor required for cloning primary HDUs when copying FITS files. */ class PHDU : public HDU //## Inherits: %394E6F9800C3 { public: virtual ~PHDU(); // Read data reads the image if readFlag is true and // optional keywords if supplied. Thus, with no arguments, // readData() does nothing. virtual void readData (bool readFlag = false, const std::vector& keys = std::vector()) = 0; virtual PHDU * clone (FITSBase* p) const = 0; virtual void zero (double value); virtual void scale (double value); virtual double zero () const; virtual double scale () const; bool simple () const; bool extend () const; public: // Additional Public Declarations // image reading/writing interface. // The S template parameter, like for Column, denotes the fact that // the type of the input array and the object to be read may not match. // the rw interface for images consists of equivalents for fits_read_img, // fits_read_pix, and fits_read_subset. // the paradigm for reading is that the image object (a valarray type) // is the size of the data already read. // write_subset has no null value aware analogue. template void write(const std::vector& first, long nElements, const std::valarray& data, S* nullValue); template void write(long first, long nElements, const std::valarray& data, S* nullValue); template void write(const std::vector& first, long nElements, const std::valarray& data); template void write(long first, long nElements, const std::valarray& data); template void write(const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, const std::valarray& data); // read image data and return an array. Can't return a reference // because the type conversion needs to allocate a new object in general. template void read(std::valarray& image) ; template void read (std::valarray& image, long first,long nElements); template void read (std::valarray& image, long first,long nElements, S* nullValue) ; template void read (std::valarray& image, const std::vector& first,long nElements) ; template void read (std::valarray& image, const std::vector& first, long nElements, S* nullValue); template void read (std::valarray& image, const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride) ; template void read (std::valarray& image, const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, S* nullValue) ; protected: PHDU(const PHDU &right); // Constructor for new FITS objects, takes as arguments // the required keywords for a primary HDU. PHDU (FITSBase* p, int bpix, int naxis, const std::vector& axes); // Custom constructor. Allows specification of data to be read and whether to read data at // construction or wait until the image data are requested. The default is 'lazy initialization:' // wait until asked. PHDU (FITSBase* p = 0); virtual void initRead (); void simple (bool value); void extend (bool value); // Additional Protected Declarations private: // Additional Private Declarations private: //## implementation // Data Members for Class Attributes bool m_simple; bool m_extend; // Additional Implementation Declarations }; // Class CCfits::PHDU inline bool PHDU::simple () const { return m_simple; } inline void PHDU::simple (bool value) { m_simple = value; } inline bool PHDU::extend () const { return m_extend; } inline void PHDU::extend (bool value) { m_extend = value; } } // namespace CCfits #endif CCfits/PHDUT.h0000644000225700000360000006704511666221067012577 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef PHDUT_H #define PHDUT_H #include "PrimaryHDU.h" #include #include namespace CCfits { template void PHDU::read (std::valarray& image) { long init(1); long nElements(std::accumulate(naxes().begin(),naxes().end(),init, std::multiplies())); read(image,1,nElements,static_cast(0)); } template void PHDU::read (std::valarray& image, long first,long nElements) { read(image, first,nElements,static_cast(0)); } template void PHDU::read (std::valarray& image, long first, long nElements, S* nullValue) { makeThisCurrent(); if ( PrimaryHDU* phdu = dynamic_cast*>(this) ) { // proceed if cast is successful. const std::valarray& __tmp = phdu->readImage(first,nElements,nullValue); image.resize(__tmp.size()); image = __tmp; } else { if (bitpix() == Ifloat) { PrimaryHDU& phdu = dynamic_cast&>(*this); float nulVal(0); if (nullValue) nulVal = static_cast(*nullValue); FITSUtil::fill(image,phdu.readImage(first,nElements,&nulVal)); } else if (bitpix() == Idouble) { PrimaryHDU& phdu = dynamic_cast&>(*this); double nulVal(0); if (nullValue) nulVal = static_cast(*nullValue); FITSUtil::fill(image,phdu.readImage(first,nElements,&nulVal)); } else if (bitpix() == Ibyte) { PrimaryHDU& phdu = dynamic_cast&>(*this); unsigned char nulVal(0); if (nullValue) nulVal = static_cast(*nullValue); FITSUtil::fill(image,phdu.readImage(first,nElements,&nulVal)); } else if (bitpix() == Ilong) { if ( zero() == ULBASE && scale() == 1) { PrimaryHDU& phdu = dynamic_cast&>(*this); unsigned INT32BIT nulVal(0); if (nullValue) nulVal = static_cast(*nullValue); FITSUtil::fill(image, phdu.readImage(first,nElements,&nulVal)); } else { PrimaryHDU& phdu = dynamic_cast&>(*this); INT32BIT nulVal(0); if (nullValue) nulVal = static_cast(*nullValue); FITSUtil::fill(image, phdu.readImage(first,nElements,&nulVal)); } } else if (bitpix() == Ishort) { if ( zero() == USBASE && scale() == 1) { PrimaryHDU& phdu = dynamic_cast&>(*this); unsigned short nulVal(0); if (nullValue) nulVal = static_cast(*nullValue); FITSUtil::fill(image, phdu.readImage(first,nElements,&nulVal)); } else { PrimaryHDU& phdu = dynamic_cast&>(*this); short nulVal(0); if (nullValue) nulVal = static_cast(*nullValue); FITSUtil::fill(image, phdu.readImage(first,nElements,&nulVal)); } } else { throw CCfits::FitsFatal(" casting image types "); } } } template void PHDU::read (std::valarray& image, const std::vector& first, long nElements, S* nullValue) { makeThisCurrent(); long firstElement(0); long dimSize(1); std::vector inputDimensions(naxis(),1); size_t sNaxis = static_cast(naxis()); size_t n(std::min(sNaxis,first.size())); std::copy(&first[0],&first[0]+n,&inputDimensions[0]); for (long i = 0; i < naxis(); ++i) { firstElement += ((inputDimensions[i] - 1)*dimSize); dimSize *=naxes(i); } ++firstElement; read(image, firstElement,nElements,nullValue); } template void PHDU::read (std::valarray& image, const std::vector& first, long nElements) { read(image, first,nElements,static_cast(0)); } template void PHDU::read (std::valarray& image, const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, S* nullValue) { makeThisCurrent(); if (PrimaryHDU* phdu = dynamic_cast*>(this)) { const std::valarray& __tmp = phdu->readImage(firstVertex,lastVertex,stride,nullValue); image.resize(__tmp.size()); image = __tmp; } else { // FITSutil::fill will take care of sizing. if (bitpix() == Ifloat) { float nulVal(0); if (nullValue) nulVal = static_cast(*nullValue); PrimaryHDU& phdu = dynamic_cast&>(*this); FITSUtil::fill(image, phdu.readImage(firstVertex,lastVertex,stride,&nulVal)); } else if (bitpix() == Idouble) { PrimaryHDU& phdu = dynamic_cast&>(*this); double nulVal(0); if (nullValue) nulVal = static_cast(*nullValue); FITSUtil::fill(image, phdu.readImage(firstVertex,lastVertex,stride,&nulVal)); } else if (bitpix() == Ibyte) { PrimaryHDU& phdu = dynamic_cast&>(*this); unsigned char nulVal(0); if (nullValue) nulVal = static_cast(*nullValue); FITSUtil::fill(image, phdu.readImage(firstVertex,lastVertex,stride,&nulVal)); } else if (bitpix() == Ilong) { if ( zero() == ULBASE && scale() == 1) { PrimaryHDU& phdu = dynamic_cast&>(*this); unsigned INT32BIT nulVal(0); if (nullValue) nulVal = static_cast(*nullValue); FITSUtil::fill(image, phdu.readImage(firstVertex,lastVertex,stride,&nulVal)); } else { PrimaryHDU& phdu = dynamic_cast&>(*this); INT32BIT nulVal(0); if (nullValue) nulVal = static_cast(*nullValue); FITSUtil::fill(image, phdu.readImage(firstVertex,lastVertex,stride,&nulVal)); } } else if (bitpix() == Ishort) { if ( zero() == USBASE && scale() == 1) { PrimaryHDU& phdu = dynamic_cast&>(*this); unsigned short nulVal(0); if (nullValue) nulVal = static_cast(*nullValue); FITSUtil::fill(image, phdu.readImage(firstVertex,lastVertex,stride,&nulVal)); } else { PrimaryHDU& phdu = dynamic_cast&>(*this); short nulVal(0); if (nullValue) nulVal = static_cast(*nullValue); FITSUtil::fill(image, phdu.readImage(firstVertex,lastVertex,stride,&nulVal)); } } else { throw CCfits::FitsFatal(" casting image types "); } } } template void PHDU::read (std::valarray& image, const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride) { read(image, firstVertex,lastVertex,stride,static_cast(0)); } template void PHDU::write(long first, long nElements, const std::valarray& data, S* nullValue) { makeThisCurrent(); if (PrimaryHDU* image = dynamic_cast*>(this)) { image->writeImage(first,nElements,data,nullValue); } else { if (bitpix() == Ifloat) { std::valarray __tmp; PrimaryHDU& phdu = dynamic_cast&>(*this); FITSUtil::fill(__tmp,data); float* pfNullValue = 0; float fNullValue = 0.0; if (nullValue) { fNullValue = static_cast(*nullValue); pfNullValue = &fNullValue; } phdu.writeImage(first,nElements,__tmp, pfNullValue); } else if (bitpix() == Idouble) { std::valarray __tmp; PrimaryHDU& phdu = dynamic_cast&>(*this); FITSUtil::fill(__tmp,data); double* pdNullValue = 0; double dNullValue = 0.0; if (nullValue) { dNullValue = static_cast(*nullValue); pdNullValue = &dNullValue; } phdu.writeImage(first,nElements,__tmp, pdNullValue); } else if (bitpix() == Ibyte) { PrimaryHDU& phdu = dynamic_cast&>(*this); std::valarray __tmp; FITSUtil::fill(__tmp,data); unsigned char *pbNull=0; unsigned char bNull=0; if (nullValue) { bNull = static_cast(*nullValue); pbNull = &bNull; } phdu.writeImage(first,nElements,__tmp, pbNull); } else if (bitpix() == Ilong) { if ( zero() == ULBASE && scale() == 1) { PrimaryHDU& phdu = dynamic_cast&>(*this); std::valarray __tmp; FITSUtil::fill(__tmp,data); unsigned INT32BIT *plNull=0; unsigned INT32BIT lNull=0; if (nullValue) { lNull = static_cast(*nullValue); plNull = &lNull; } phdu.writeImage(first,nElements,__tmp, plNull); } else { PrimaryHDU& phdu = dynamic_cast&>(*this); std::valarray __tmp; FITSUtil::fill(__tmp,data); INT32BIT *plNull=0; INT32BIT lNull=0; if (nullValue) { lNull = static_cast(*nullValue); plNull = &lNull; } phdu.writeImage(first,nElements,__tmp, plNull); } } else if (bitpix() == Ishort) { if ( zero() == USBASE && scale() == 1) { PrimaryHDU& phdu = dynamic_cast&>(*this); std::valarray __tmp; FITSUtil::fill(__tmp,data); unsigned short *psNull=0; unsigned short sNull=0; if (nullValue) { sNull = static_cast(*nullValue); psNull = &sNull; } phdu.writeImage(first,nElements,__tmp, psNull); } else { PrimaryHDU& phdu = dynamic_cast&>(*this); std::valarray __tmp; FITSUtil::fill(__tmp,data); short *psNull=0; short sNull=0; if (nullValue) { sNull = static_cast(*nullValue); psNull = &sNull; } phdu.writeImage(first,nElements,__tmp,psNull); } } else { FITSUtil::MatchType errType; throw FITSUtil::UnrecognizedType(FITSUtil::FITSType2String(errType())); } } } template void PHDU::write(long first, long nElements, const std::valarray& data) { write(first, nElements, data, static_cast(0)); } template void PHDU::write(const std::vector& first, long nElements, const std::valarray& data, S* nullValue) { makeThisCurrent(); size_t n(first.size()); long firstElement(0); long dimSize(1); for (long i = 0; i < first.size(); ++i) { firstElement += ((first[i] - 1)*dimSize); dimSize *=naxes(i); } ++firstElement; write(firstElement,nElements,data,nullValue); } template void PHDU::write(const std::vector& first, long nElements, const std::valarray& data) { makeThisCurrent(); size_t n(first.size()); long firstElement(0); long dimSize(1); for (long i = 0; i < first.size(); ++i) { firstElement += ((first[i] - 1)*dimSize); dimSize *=naxes(i); } ++firstElement; write(firstElement,nElements,data); } template void PHDU::write(const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, const std::valarray& data) { makeThisCurrent(); try { PrimaryHDU& image = dynamic_cast&>(*this); image.writeImage(firstVertex,lastVertex,stride,data); } catch (std::bad_cast) { // write input type S to Image type... if (bitpix() == Ifloat) { PrimaryHDU& phdu = dynamic_cast&>(*this); size_t n(data.size()); std::valarray __tmp(n); for (size_t j= 0; j < n; ++j) __tmp[j] = data[j]; phdu.writeImage(firstVertex,lastVertex,stride,__tmp); } else if (bitpix() == Idouble) { PrimaryHDU& phdu = dynamic_cast&>(*this); size_t n(data.size()); std::valarray __tmp(n); for (size_t j= 0; j < n; ++j) __tmp[j] = data[j]; phdu.writeImage(firstVertex,lastVertex,stride,__tmp); } else if (bitpix() == Ibyte) { PrimaryHDU& phdu = dynamic_cast&>(*this); size_t n(data.size()); std::valarray __tmp(n); for (size_t j= 0; j < n; ++j) __tmp[j] = data[j]; phdu.writeImage(firstVertex,lastVertex,stride,__tmp); } else if (bitpix() == Ilong) { if ( zero() == ULBASE && scale() == 1) { PrimaryHDU& phdu = dynamic_cast&>(*this); size_t n(data.size()); std::valarray __tmp(n); for (size_t j= 0; j < n; ++j) __tmp[j] = data[j]; phdu.writeImage(firstVertex,lastVertex,stride,__tmp); } else { PrimaryHDU& phdu = dynamic_cast&>(*this); size_t n(data.size()); std::valarray __tmp(n); for (size_t j= 0; j < n; ++j) __tmp[j] = data[j]; phdu.writeImage(firstVertex,lastVertex,stride,__tmp); } } else if (bitpix() == Ishort) { if ( zero() == USBASE && scale() == 1) { PrimaryHDU& phdu = dynamic_cast&>(*this); size_t n(data.size()); std::valarray __tmp(n); for (size_t j= 0; j < n; ++j) __tmp[j] = data[j]; phdu.writeImage(firstVertex,lastVertex,stride,__tmp); } else { PrimaryHDU& phdu = dynamic_cast&>(*this); size_t n(data.size()); std::valarray __tmp(n); for (size_t j= 0; j < n; ++j) __tmp[j] = data[j]; phdu.writeImage(firstVertex,lastVertex,stride,__tmp); } } else { FITSUtil::MatchType errType; throw FITSUtil::UnrecognizedType(FITSUtil::FITSType2String(errType())); } } } } // namespace CCfits #endif CCfits/PrimaryHDU.h0000644000225700000360000001707511470265345013675 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef PRIMARYHDU_H #define PRIMARYHDU_H 1 // valarray #include // PHDU #include "PHDU.h" // HDUCreator #include "HDUCreator.h" // Image #include "Image.h" // FITS #include "FITS.h" #include "CCfits.h" #include #include #include namespace CCfits { template class PrimaryHDU : public PHDU //## Inherits: %394E6F870338 { public: virtual PrimaryHDU * clone (FITSBase* p) const; // Read data reads the image if readFlag is true and // optional keywords if supplied. Thus, with no arguments, // readData() does nothing. virtual void readData (bool readFlag = false, const std::vector& keys = std::vector()); const std::valarray& image () const; std::valarray& image (); void setImage (const std::valarray& inData); // Read data reads the image if readFlag is true and // optional keywords if supplied. Thus, with no arguments, // readData() does nothing. virtual const std::valarray& readImage (long first, long nElements, T* nullValue); // Read data reads the image if readFlag is true and // optional keywords if supplied. Thus, with no arguments, // readData() does nothing. virtual const std::valarray& readImage (const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, T* nullValue); // Read data reads the image if readFlag is true and // optional keywords if supplied. Thus, with no arguments, // readData() does nothing. virtual void writeImage (long first, long nElements, const std::valarray& inData, T* nullValue = 0); // Read data reads the image if readFlag is true and // optional keywords if supplied. Thus, with no arguments, // readData() does nothing. virtual void writeImage (const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, const std::valarray& inData); // Additional Public Declarations protected: // Constructor for new FITS objects, takes as arguments // the required keywords for a primary HDU. PrimaryHDU (FITSBase* p, const int bitpix, const int naxis, const std::vector& naxes, const std::valarray& data = std::valarray()); // Custom constructor. Allows specification of data to be read and whether to read data at // construction or wait until the image data are requested. The default is 'lazy initialization:' // wait until asked. PrimaryHDU (FITSBase* p, bool readFlag = false, const std::vector& keys = std::vector()); // Additional Protected Declarations private: PrimaryHDU(const PrimaryHDU< T > &right); PrimaryHDU< T > & operator=(const PrimaryHDU< T > &right); virtual std::ostream & put (std::ostream &s) const; const Image& data () const; // Additional Private Declarations private: //## implementation // Data Members for Associations Image m_data; // Additional Implementation Declarations friend class HDUCreator; friend class PHDU; }; // Parameterized Class CCfits::PrimaryHDU template inline std::ostream & PrimaryHDU::put (std::ostream &s) const { s << "PrimaryHDU:: Simple? " << simple() << " Extend?: " << extend() << " Bitpix: " << bitpix() << " naxis = " << axes() << "\n"; s << "Axis Lengths: \n"; for (int i=0; i < axes(); i++) s << " axis[" << i << "] " << axis(i) << "\n"; s << "\nNumber of keywords read: " << keyWord().size() << "\n"; for (std::map::const_iterator ki = keyWord().begin(); ki != keyWord().end(); ki++) { s << *((*ki).second) << std::endl; } s << " HISTORY: " << history() << '\n'; s << " COMMENTS: " < inline const Image& PrimaryHDU::data () const { return m_data; } // Parameterized Class CCfits::PrimaryHDU template PrimaryHDU::PrimaryHDU(const PrimaryHDU &right) : PHDU(right), m_data(right.m_data) { } template PrimaryHDU::PrimaryHDU (FITSBase* p, const int bitpix, const int naxis, const std::vector& naxes, const std::valarray& data) : PHDU(p,bitpix,naxis,naxes),m_data(data) { } template PrimaryHDU::PrimaryHDU (FITSBase* p, bool readFlag, const std::vector& keys) : PHDU(p), m_data() { initRead(); if (readFlag || keys.size()) readData(readFlag,keys); } template PrimaryHDU * PrimaryHDU::clone (FITSBase* p) const { PrimaryHDU* cloned = new PrimaryHDU(*this); cloned->parent() = p; return cloned; } template void PrimaryHDU::readData (bool readFlag, const std::vector& keys) { // Default reading mode. Read everything if readFlag is true. makeThisCurrent(); if ( keys.size() > 0) { std::list keyList(keys.size()); // keys is converted to a list so that any keys not in the header // can be easily erased. internally an exception will be thrown, // on a missing key, and its catch clause will print a message. std::copy(keys.begin(),keys.end(),keyList.begin()); readKeywords(keyList); } // read the entire image, setting null values to the // return value from FitsNullValue. It would be easy to make the null value // a user defined input, but that's not implemented yet. if ( readFlag && (naxis() > 0) ) { FITSUtil::FitsNullValue null; long init(1); T nulValue(null()); long nelements(std::accumulate(naxes().begin(),naxes().end(),init,std::multiplies() )); readImage(1,nelements,&nulValue); } } template const std::valarray& PrimaryHDU::image () const { return m_data.image(); } template std::valarray& PrimaryHDU::image () { return m_data.image(); } template void PrimaryHDU::setImage (const std::valarray& inData) { m_data.image().resize(inData.size()); m_data.setImage(inData); } template const std::valarray& PrimaryHDU::readImage (long first, long nElements, T* nullValue) { makeThisCurrent(); return m_data.readImage(fitsPointer(),first,nElements,nullValue,naxes(),anynul()); } template const std::valarray& PrimaryHDU::readImage (const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, T* nullValue) { makeThisCurrent(); return m_data.readImage(fitsPointer(),firstVertex,lastVertex,stride,nullValue,naxes(),anynul()); } template void PrimaryHDU::writeImage (long first, long nElements, const std::valarray& inData, T* nullValue) { m_data.writeImage(fitsPointer(),first,nElements,inData,naxes(),nullValue); } template void PrimaryHDU::writeImage (const std::vector& firstVertex, const std::vector& lastVertex, const std::vector& stride, const std::valarray& inData) { m_data.writeImage(fitsPointer(),firstVertex,lastVertex,stride,inData,naxes()); } // Additional Declarations } // namespace CCfits #endif CCfits/Table.h0000644000225700000360000002727111470265345012737 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifndef TABLE_H #define TABLE_H 1 // ExtHDU #include "ExtHDU.h" // FitsError #include "FitsError.h" namespace CCfits { class Column; } // namespace CCfits #ifdef _MSC_VER #include "MSconfig.h" // for truncation warning #endif #ifdef HAVE_CONFIG_H #include "config.h" #endif #ifdef SSTREAM_DEFECT #include #else #include #endif namespace CCfits { /*! \class Table Table is the abstract common interface to Binary and Ascii Table HDUs. Table is a subclass of ExtHDU that contains an associative array of Column objects. It implements methods for reading and writing columns */ /*! \class Table::NoSuchColumn @ingroup FITSexcept @brief Exception to be thrown on a failure to retrieve a column specified either by name or index number. When a Table object is created, the header is read and a column object created for each column defined. Thus id this exception is thrown the column requested does not exist in the HDU (note that the column can easily exist and not contain any data since the user controls whether the column will be read when the FITS object is instantiated). It is expected that the index number calls will be primarily internal. The underlying implementation makes lookup by name more efficient. The exception has two variants, which take either an integer or a string as parameter. These are used according to the accessor that threw them, either by name or index. */ /*! \fn Table::NoSuchColumn::NoSuchColumn (const String& name, bool silent = true); \brief Exception ctor for exception thrown if the requested column (specified by name) is not present Message: Fits Error: cannot find Column named: name is printed. \param name the requested column name \param silent if true, print message whether FITS::verboseMode is set or not. */ /*! \fn Table::NoSuchColumn::NoSuchColumn (int index, bool silent = true); \brief Exception ctor for exception thrown if the requested column (specified by name) is not present Message: Fits Error: column not present - Column number index is printed. \param index the requested column number \param silent if true, print message whether FITS::verboseMode is set or not. */ /*! \fn void Table::init (bool readFlag = false, const std::vector& keys = std::vector()); "Late Constructor." wrap-up of calls needed to construct a table. Reads header information and sets up the array of column objects in the table. Protected function, provided to allow the implementation of extensions of the library. */ /*! \fn virtual Table::~Table(); \brief destructor */ /*! \fn virtual Table::Table(const Table& right); \brief copy constructor */ /*! \fn Column& Table::column (const string& colName, bool caseSensitive = true) const; \brief return a reference to the column of name colName. If the caseSensitive parameter is set to false, the search will be case-insensitive. \exceptions Table::NoSuchColumn passes colName to the diagnostic message printed when the exception is thrown */ /*! \fn Column& Table::column (int colIndex) const; \brief return a reference to the column identified by colIndex Throws NoSuchColumn if the index is out of range -index must satisfy (1 <= index <= numCols() ). N.B. the column number is assigned as 1-based, as in FORTRAN rather than 0-based as in C. \exception Table::NoSuchColumn passes colIndex to the diagnostic message printed when the exception is thrown */ /*! \fn void Table::deleteRows (long first, long number=1); \brief delete a range of rows in a table. In both this and the overloaded version which allows a selection of rows to be deleted, the cfitsio library is called first to perform the operation on the disk file, and then the FITS object is updated. \param first the start row of the range \param number the number of rows to delete; defaults to 1. \exception FitsError thrown if the cfitsio call fails to return without error. */ /*! \fn void Table::deleteRows (const std::vector& rowlist); \brief delete a set of rows in the table specified by an input array. \param rowlist The vector of row numbers to be deleted. \exception FitsError thrown if the underlying cfitsio call fails to return without error. */ /*! \fn void Table::insertRows (long first, long number); \brief insert empty rows into the table \param first the start row of the range \param number the number of rows to insert. \exception FitsError thrown if the underlying cfitsio call fails to return without error. */ /*! \fn long Table::rows () const; \brief return the number of rows in the table (NAXIS2). */ /*! \fn void Table::updateRows (); \brief update the number of rows in the table Called to force the Table to reset its internal "rows" attribute. public, but is called when needed internally. */ /*! \fn Table::Table (FITSBase* p, HduType xtype, const String &hduName, int rows, const std::vector& columnName, const std::vector& columnFmt, const std::vector& columnUnit = std::vector(), int version = 1); \brief Constructor to be used for creating new HDUs. \param p The FITS file in which to place the new HDU \param xtype An HduType enumerator defined in CCfits.h for type of table (AsciiTbl or BinaryTbl) \param hduName The name of this HDU extension \param rows The number of rows in the new HDU (the value of the NAXIS2 keyword). \param columnName a vector of names for the columns. \param columnFmt the format strings for the columns \param columnUnit the units for the columns. \param version a version number */ /*! \fn Table::Table (FITSBase* p, HduType xtype, const String &hduName = String(""), int version = 1); \brief Constructor to be called by operations that read Table specified by hduName and version. */ /*! \fn Table::Table (FITSBase* p, HduType xtype, int number); \brief Table constructor for getting Tables by number. Necessary since EXTNAME is a reserved not required keyword, and users may thus read FITS files without an extension name. Since an HDU is completely specified by extension number, this is part of the public interface. */ /*! \fn const map& Table::column () const; \brief return a reference to the array containing the columns. This public version might be used to query the size of the column container in a routine that manipulates column table data. */ /*! \fn map& Table::column (); \brief return a reference to the array containing the columns. To be used in the implementation of subclasses. */ /*! \fn void Table::rows (long value); \brief set the number of rows in the Table. */ /*! \fn int Table::numCols () const; \brief return the number of Columns in the Table (the TFIELDS keyword). */ /*! \fn void Table::numCols (int value); \brief set the number of Columns in the Table */ /*! \fn void Table::setColumn (const String& colname, Column *value); \brief set the column with name colname to the input value. */ class Table : public ExtHDU //## Inherits: %3804A126EB10 { public: class NoSuchColumn : public FitsException //## Inherits: %397CB0970174 { public: NoSuchColumn (const String& name, bool silent = true); NoSuchColumn (int index, bool silent = true); protected: private: private: //## implementation }; class InvalidColumnSpecification : public FitsException //## Inherits: %3B1E52D703B0 { public: InvalidColumnSpecification (const String& msg, bool silent = true); protected: private: private: //## implementation }; Table(const Table &right); virtual ~Table(); // ! return reference to a column given by column name. virtual Column& column (const String& colName, bool caseSensitive = true) const; virtual Column& column (int colIndex // ! return reference to a column given by a column index number ) const; virtual long rows () const; void updateRows (); void rows (long numRows); virtual void deleteColumn (const String& columnName); // Insert one or more blank rows into a FITS column. void insertRows (long first, long number = 1); void deleteRows (long first, long number = 1); void deleteRows (const std::vector& rowList); virtual long getRowsize () const; virtual int numCols () const; virtual const std::map& column () const; virtual std::map& column (); public: // Additional Public Declarations protected: Table (FITSBase* p, HduType xtype, const String &hduName, int rows, // ! Number of rows in table at creation, to be used to initialize NAXIS2 const std::vector& columnName, const std::vector& columnFmt, const std::vector& columnUnit = std::vector(), int version = 1); // To be called by reading operations. Table (FITSBase* p, HduType xtype, const String &hduName = String(""), int version = 1); // ExtHDU constructor for getting ExtHDUs by number. // Necessary since EXTNAME is a reserved not required // keyword. Table (FITSBase* p, HduType xtype, int number); virtual std::ostream & put (std::ostream &s) const; void column (int columnNum, Column *value); void init (bool readFlag = false, const std::vector& keys = std::vector()); virtual void setColumn (const String& colname, Column* value); void reindex (); void numCols (int value); // Additional Protected Declarations private: virtual void initRead (); virtual void readTableHeader (int ncols, std::vector& colName, std::vector& colFmt, std::vector& colUnit) = 0; // deep erasure , to be called by assignment and dtors. void clearData (); void copyData (const Table& right); // Additional Private Declarations private: //## implementation // Data Members for Class Attributes int m_numCols; // Data Members for Associations std::map m_column; // Additional Implementation Declarations friend class Column; }; // Class CCfits::Table::NoSuchColumn // Class CCfits::Table::InvalidColumnSpecification // Class CCfits::Table inline long Table::rows () const { return axis(1); } inline void Table::rows (long numRows) { naxes(1) = numRows; } inline int Table::numCols () const { return m_numCols; } inline const std::map& Table::column () const { return m_column; } inline void Table::numCols (int value) { m_numCols = value; } inline std::map& Table::column () { return m_column; } } // namespace CCfits #endif CCfits/CCfits.pc.in0000644000225700000360000000040111667163726013635 0ustar cagordonlheaprefix=@prefix@ exec_prefix=@exec_prefix@ libdir=@libdir@ includedir=@includedir@ Name: CCfits Description: Object Oriented C++ Interface to CFITSIO Library Requires.private: cfitsio >= 3.08 Version: 2.4 Libs: -L${libdir} -lCCfits Cflags: -I${includedir} CCfits/Doxyfile.in0000644000225700000360000022114611657005066013646 0ustar cagordonlhea# Doxyfile 1.7.5.1 # This file describes the settings to be used by the documentation system # doxygen (www.doxygen.org) for a project. # # All text after a hash (#) is considered a comment and will be ignored. # The format is: # TAG = value [value, ...] # For lists items can also be appended using: # TAG += value [value, ...] # Values that contain spaces should be placed between quotes (" "). #--------------------------------------------------------------------------- # Project related configuration options #--------------------------------------------------------------------------- # This tag specifies the encoding used for all characters in the config file # that follow. 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Doxygen will use this # information to generate all constant output in the proper language. # The default language is English, other supported languages are: # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional, # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German, # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English # messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian, # Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak, # Slovene, Spanish, Swedish, Ukrainian, and Vietnamese. OUTPUT_LANGUAGE = English # If the BRIEF_MEMBER_DESC tag is set to YES (the default) Doxygen will # include brief member descriptions after the members that are listed in # the file and class documentation (similar to JavaDoc). # Set to NO to disable this. BRIEF_MEMBER_DESC = YES # If the REPEAT_BRIEF tag is set to YES (the default) Doxygen will prepend # the brief description of a member or function before the detailed description. # Note: if both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the # brief descriptions will be completely suppressed. REPEAT_BRIEF = YES # This tag implements a quasi-intelligent brief description abbreviator # that is used to form the text in various listings. Each string # in this list, if found as the leading text of the brief description, will be # stripped from the text and the result after processing the whole list, is # used as the annotated text. Otherwise, the brief description is used as-is. # If left blank, the following values are used ("$name" is automatically # replaced with the name of the entity): "The $name class" "The $name widget" # "The $name file" "is" "provides" "specifies" "contains" # "represents" "a" "an" "the" ABBREVIATE_BRIEF = # If the ALWAYS_DETAILED_SEC and REPEAT_BRIEF tags are both set to YES then # Doxygen will generate a detailed section even if there is only a brief # description. ALWAYS_DETAILED_SEC = NO # If the INLINE_INHERITED_MEMB tag is set to YES, doxygen will show all # inherited members of a class in the documentation of that class as if those # members were ordinary class members. Constructors, destructors and assignment # operators of the base classes will not be shown. INLINE_INHERITED_MEMB = NO # If the FULL_PATH_NAMES tag is set to YES then Doxygen will prepend the full # path before files name in the file list and in the header files. If set # to NO the shortest path that makes the file name unique will be used. FULL_PATH_NAMES = NO # If the FULL_PATH_NAMES tag is set to YES then the STRIP_FROM_PATH tag # can be used to strip a user-defined part of the path. Stripping is # only done if one of the specified strings matches the left-hand part of # the path. The tag can be used to show relative paths in the file list. # If left blank the directory from which doxygen is run is used as the # path to strip. STRIP_FROM_PATH = # The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of # the path mentioned in the documentation of a class, which tells # the reader which header file to include in order to use a class. # If left blank only the name of the header file containing the class # definition is used. Otherwise one should specify the include paths that # are normally passed to the compiler using the -I flag. STRIP_FROM_INC_PATH = # If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter # (but less readable) file names. This can be useful if your file system # doesn't support long names like on DOS, Mac, or CD-ROM. SHORT_NAMES = NO # If the JAVADOC_AUTOBRIEF tag is set to YES then Doxygen # will interpret the first line (until the first dot) of a JavaDoc-style # comment as the brief description. If set to NO, the JavaDoc # comments will behave just like regular Qt-style comments # (thus requiring an explicit @brief command for a brief description.) JAVADOC_AUTOBRIEF = NO # If the QT_AUTOBRIEF tag is set to YES then Doxygen will # interpret the first line (until the first dot) of a Qt-style # comment as the brief description. If set to NO, the comments # will behave just like regular Qt-style comments (thus requiring # an explicit \brief command for a brief description.) QT_AUTOBRIEF = NO # The MULTILINE_CPP_IS_BRIEF tag can be set to YES to make Doxygen # treat a multi-line C++ special comment block (i.e. a block of //! or /// # comments) as a brief description. This used to be the default behaviour. # The new default is to treat a multi-line C++ comment block as a detailed # description. Set this tag to YES if you prefer the old behaviour instead. MULTILINE_CPP_IS_BRIEF = NO # If the INHERIT_DOCS tag is set to YES (the default) then an undocumented # member inherits the documentation from any documented member that it # re-implements. INHERIT_DOCS = YES # If the SEPARATE_MEMBER_PAGES tag is set to YES, then doxygen will produce # a new page for each member. If set to NO, the documentation of a member will # be part of the file/class/namespace that contains it. SEPARATE_MEMBER_PAGES = NO # The TAB_SIZE tag can be used to set the number of spaces in a tab. # Doxygen uses this value to replace tabs by spaces in code fragments. TAB_SIZE = 8 # This tag can be used to specify a number of aliases that acts # as commands in the documentation. An alias has the form "name=value". # For example adding "sideeffect=\par Side Effects:\n" will allow you to # put the command \sideeffect (or @sideeffect) in the documentation, which # will result in a user-defined paragraph with heading "Side Effects:". # You can put \n's in the value part of an alias to insert newlines. ALIASES = # Set the OPTIMIZE_OUTPUT_FOR_C tag to YES if your project consists of C # sources only. Doxygen will then generate output that is more tailored for C. # For instance, some of the names that are used will be different. The list # of all members will be omitted, etc. OPTIMIZE_OUTPUT_FOR_C = NO # Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java # sources only. Doxygen will then generate output that is more tailored for # Java. For instance, namespaces will be presented as packages, qualified # scopes will look different, etc. OPTIMIZE_OUTPUT_JAVA = NO # Set the OPTIMIZE_FOR_FORTRAN tag to YES if your project consists of Fortran # sources only. Doxygen will then generate output that is more tailored for # Fortran. OPTIMIZE_FOR_FORTRAN = NO # Set the OPTIMIZE_OUTPUT_VHDL tag to YES if your project consists of VHDL # sources. Doxygen will then generate output that is tailored for # VHDL. OPTIMIZE_OUTPUT_VHDL = NO # Doxygen selects the parser to use depending on the extension of the files it # parses. With this tag you can assign which parser to use for a given extension. # Doxygen has a built-in mapping, but you can override or extend it using this # tag. The format is ext=language, where ext is a file extension, and language # is one of the parsers supported by doxygen: IDL, Java, Javascript, CSharp, C, # C++, D, PHP, Objective-C, Python, Fortran, VHDL, C, C++. For instance to make # doxygen treat .inc files as Fortran files (default is PHP), and .f files as C # (default is Fortran), use: inc=Fortran f=C. Note that for custom extensions # you also need to set FILE_PATTERNS otherwise the files are not read by doxygen. EXTENSION_MAPPING = # If you use STL classes (i.e. std::string, std::vector, etc.) but do not want # to include (a tag file for) the STL sources as input, then you should # set this tag to YES in order to let doxygen match functions declarations and # definitions whose arguments contain STL classes (e.g. func(std::string); v.s. # func(std::string) {}). This also makes the inheritance and collaboration # diagrams that involve STL classes more complete and accurate. BUILTIN_STL_SUPPORT = NO # If you use Microsoft's C++/CLI language, you should set this option to YES to # enable parsing support. CPP_CLI_SUPPORT = NO # Set the SIP_SUPPORT tag to YES if your project consists of sip sources only. # Doxygen will parse them like normal C++ but will assume all classes use public # instead of private inheritance when no explicit protection keyword is present. SIP_SUPPORT = NO # For Microsoft's IDL there are propget and propput attributes to indicate getter # and setter methods for a property. Setting this option to YES (the default) # will make doxygen replace the get and set methods by a property in the # documentation. This will only work if the methods are indeed getting or # setting a simple type. If this is not the case, or you want to show the # methods anyway, you should set this option to NO. IDL_PROPERTY_SUPPORT = YES # If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC # tag is set to YES, then doxygen will reuse the documentation of the first # member in the group (if any) for the other members of the group. By default # all members of a group must be documented explicitly. DISTRIBUTE_GROUP_DOC = NO # Set the SUBGROUPING tag to YES (the default) to allow class member groups of # the same type (for instance a group of public functions) to be put as a # subgroup of that type (e.g. under the Public Functions section). Set it to # NO to prevent subgrouping. Alternatively, this can be done per class using # the \nosubgrouping command. SUBGROUPING = YES # When the INLINE_GROUPED_CLASSES tag is set to YES, classes, structs and # unions are shown inside the group in which they are included (e.g. using # @ingroup) instead of on a separate page (for HTML and Man pages) or # section (for LaTeX and RTF). INLINE_GROUPED_CLASSES = NO # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and # unions with only public data fields will be shown inline in the documentation # of the scope in which they are defined (i.e. file, namespace, or group # documentation), provided this scope is documented. If set to NO (the default), # structs, classes, and unions are shown on a separate page (for HTML and Man # pages) or section (for LaTeX and RTF). INLINE_SIMPLE_STRUCTS = NO # When TYPEDEF_HIDES_STRUCT is enabled, a typedef of a struct, union, or enum # is documented as struct, union, or enum with the name of the typedef. So # typedef struct TypeS {} TypeT, will appear in the documentation as a struct # with name TypeT. When disabled the typedef will appear as a member of a file, # namespace, or class. And the struct will be named TypeS. This can typically # be useful for C code in case the coding convention dictates that all compound # types are typedef'ed and only the typedef is referenced, never the tag name. TYPEDEF_HIDES_STRUCT = NO # The SYMBOL_CACHE_SIZE determines the size of the internal cache use to # determine which symbols to keep in memory and which to flush to disk. # When the cache is full, less often used symbols will be written to disk. # For small to medium size projects (<1000 input files) the default value is # probably good enough. For larger projects a too small cache size can cause # doxygen to be busy swapping symbols to and from disk most of the time # causing a significant performance penalty. # If the system has enough physical memory increasing the cache will improve the # performance by keeping more symbols in memory. Note that the value works on # a logarithmic scale so increasing the size by one will roughly double the # memory usage. The cache size is given by this formula: # 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0, # corresponding to a cache size of 2^16 = 65536 symbols SYMBOL_CACHE_SIZE = 0 #--------------------------------------------------------------------------- # Build related configuration options #--------------------------------------------------------------------------- # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in # documentation are documented, even if no documentation was available. # Private class members and static file members will be hidden unless # the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES EXTRACT_ALL = NO # If the EXTRACT_PRIVATE tag is set to YES all private members of a class # will be included in the documentation. EXTRACT_PRIVATE = NO # If the EXTRACT_STATIC tag is set to YES all static members of a file # will be included in the documentation. EXTRACT_STATIC = NO # If the EXTRACT_LOCAL_CLASSES tag is set to YES classes (and structs) # defined locally in source files will be included in the documentation. # If set to NO only classes defined in header files are included. EXTRACT_LOCAL_CLASSES = YES # This flag is only useful for Objective-C code. When set to YES local # methods, which are defined in the implementation section but not in # the interface are included in the documentation. # If set to NO (the default) only methods in the interface are included. EXTRACT_LOCAL_METHODS = NO # If this flag is set to YES, the members of anonymous namespaces will be # extracted and appear in the documentation as a namespace called # 'anonymous_namespace{file}', where file will be replaced with the base # name of the file that contains the anonymous namespace. By default # anonymous namespaces are hidden. EXTRACT_ANON_NSPACES = NO # If the HIDE_UNDOC_MEMBERS tag is set to YES, Doxygen will hide all # undocumented members of documented classes, files or namespaces. # If set to NO (the default) these members will be included in the # various overviews, but no documentation section is generated. # This option has no effect if EXTRACT_ALL is enabled. HIDE_UNDOC_MEMBERS = YES # If the HIDE_UNDOC_CLASSES tag is set to YES, Doxygen will hide all # undocumented classes that are normally visible in the class hierarchy. # If set to NO (the default) these classes will be included in the various # overviews. This option has no effect if EXTRACT_ALL is enabled. HIDE_UNDOC_CLASSES = YES # If the HIDE_FRIEND_COMPOUNDS tag is set to YES, Doxygen will hide all # friend (class|struct|union) declarations. # If set to NO (the default) these declarations will be included in the # documentation. HIDE_FRIEND_COMPOUNDS = NO # If the HIDE_IN_BODY_DOCS tag is set to YES, Doxygen will hide any # documentation blocks found inside the body of a function. # If set to NO (the default) these blocks will be appended to the # function's detailed documentation block. HIDE_IN_BODY_DOCS = NO # The INTERNAL_DOCS tag determines if documentation # that is typed after a \internal command is included. If the tag is set # to NO (the default) then the documentation will be excluded. # Set it to YES to include the internal documentation. INTERNAL_DOCS = NO # If the CASE_SENSE_NAMES tag is set to NO then Doxygen will only generate # file names in lower-case letters. If set to YES upper-case letters are also # allowed. This is useful if you have classes or files whose names only differ # in case and if your file system supports case sensitive file names. Windows # and Mac users are advised to set this option to NO. CASE_SENSE_NAMES = YES # If the HIDE_SCOPE_NAMES tag is set to NO (the default) then Doxygen # will show members with their full class and namespace scopes in the # documentation. If set to YES the scope will be hidden. HIDE_SCOPE_NAMES = NO # If the SHOW_INCLUDE_FILES tag is set to YES (the default) then Doxygen # will put a list of the files that are included by a file in the documentation # of that file. SHOW_INCLUDE_FILES = YES # If the FORCE_LOCAL_INCLUDES tag is set to YES then Doxygen # will list include files with double quotes in the documentation # rather than with sharp brackets. FORCE_LOCAL_INCLUDES = NO # If the INLINE_INFO tag is set to YES (the default) then a tag [inline] # is inserted in the documentation for inline members. INLINE_INFO = YES # If the SORT_MEMBER_DOCS tag is set to YES (the default) then doxygen # will sort the (detailed) documentation of file and class members # alphabetically by member name. If set to NO the members will appear in # declaration order. SORT_MEMBER_DOCS = YES # If the SORT_BRIEF_DOCS tag is set to YES then doxygen will sort the # brief documentation of file, namespace and class members alphabetically # by member name. If set to NO (the default) the members will appear in # declaration order. SORT_BRIEF_DOCS = YES # If the SORT_MEMBERS_CTORS_1ST tag is set to YES then doxygen # will sort the (brief and detailed) documentation of class members so that # constructors and destructors are listed first. If set to NO (the default) # the constructors will appear in the respective orders defined by # SORT_MEMBER_DOCS and SORT_BRIEF_DOCS. # This tag will be ignored for brief docs if SORT_BRIEF_DOCS is set to NO # and ignored for detailed docs if SORT_MEMBER_DOCS is set to NO. SORT_MEMBERS_CTORS_1ST = YES # If the SORT_GROUP_NAMES tag is set to YES then doxygen will sort the # hierarchy of group names into alphabetical order. If set to NO (the default) # the group names will appear in their defined order. SORT_GROUP_NAMES = NO # If the SORT_BY_SCOPE_NAME tag is set to YES, the class list will be # sorted by fully-qualified names, including namespaces. If set to # NO (the default), the class list will be sorted only by class name, # not including the namespace part. # Note: This option is not very useful if HIDE_SCOPE_NAMES is set to YES. # Note: This option applies only to the class list, not to the # alphabetical list. SORT_BY_SCOPE_NAME = YES # If the STRICT_PROTO_MATCHING option is enabled and doxygen fails to # do proper type resolution of all parameters of a function it will reject a # match between the prototype and the implementation of a member function even # if there is only one candidate or it is obvious which candidate to choose # by doing a simple string match. By disabling STRICT_PROTO_MATCHING doxygen # will still accept a match between prototype and implementation in such cases. STRICT_PROTO_MATCHING = NO # The GENERATE_TODOLIST tag can be used to enable (YES) or # disable (NO) the todo list. This list is created by putting \todo # commands in the documentation. GENERATE_TODOLIST = YES # The GENERATE_TESTLIST tag can be used to enable (YES) or # disable (NO) the test list. This list is created by putting \test # commands in the documentation. GENERATE_TESTLIST = YES # The GENERATE_BUGLIST tag can be used to enable (YES) or # disable (NO) the bug list. This list is created by putting \bug # commands in the documentation. GENERATE_BUGLIST = YES # The GENERATE_DEPRECATEDLIST tag can be used to enable (YES) or # disable (NO) the deprecated list. This list is created by putting # \deprecated commands in the documentation. GENERATE_DEPRECATEDLIST= YES # The ENABLED_SECTIONS tag can be used to enable conditional # documentation sections, marked by \if sectionname ... \endif. ENABLED_SECTIONS = # The MAX_INITIALIZER_LINES tag determines the maximum number of lines # the initial value of a variable or macro consists of for it to appear in # the documentation. If the initializer consists of more lines than specified # here it will be hidden. Use a value of 0 to hide initializers completely. # The appearance of the initializer of individual variables and macros in the # documentation can be controlled using \showinitializer or \hideinitializer # command in the documentation regardless of this setting. MAX_INITIALIZER_LINES = 30 # Set the SHOW_USED_FILES tag to NO to disable the list of files generated # at the bottom of the documentation of classes and structs. If set to YES the # list will mention the files that were used to generate the documentation. SHOW_USED_FILES = YES # If the sources in your project are distributed over multiple directories # then setting the SHOW_DIRECTORIES tag to YES will show the directory hierarchy # in the documentation. The default is NO. SHOW_DIRECTORIES = NO # Set the SHOW_FILES tag to NO to disable the generation of the Files page. # This will remove the Files entry from the Quick Index and from the # Folder Tree View (if specified). The default is YES. SHOW_FILES = YES # Set the SHOW_NAMESPACES tag to NO to disable the generation of the # Namespaces page. # This will remove the Namespaces entry from the Quick Index # and from the Folder Tree View (if specified). The default is YES. SHOW_NAMESPACES = YES # The FILE_VERSION_FILTER tag can be used to specify a program or script that # doxygen should invoke to get the current version for each file (typically from # the version control system). Doxygen will invoke the program by executing (via # popen()) the command , where is the value of # the FILE_VERSION_FILTER tag, and is the name of an input file # provided by doxygen. Whatever the program writes to standard output # is used as the file version. See the manual for examples. FILE_VERSION_FILTER = # The LAYOUT_FILE tag can be used to specify a layout file which will be parsed # by doxygen. The layout file controls the global structure of the generated # output files in an output format independent way. The create the layout file # that represents doxygen's defaults, run doxygen with the -l option. # You can optionally specify a file name after the option, if omitted # DoxygenLayout.xml will be used as the name of the layout file. LAYOUT_FILE = # The CITE_BIB_FILES tag can be used to specify one or more bib files # containing the references data. This must be a list of .bib files. The # .bib extension is automatically appended if omitted. Using this command # requires the bibtex tool to be installed. See also # http://en.wikipedia.org/wiki/BibTeX for more info. For LaTeX the style # of the bibliography can be controlled using LATEX_BIB_STYLE. CITE_BIB_FILES = #--------------------------------------------------------------------------- # configuration options related to warning and progress messages #--------------------------------------------------------------------------- # The QUIET tag can be used to turn on/off the messages that are generated # by doxygen. Possible values are YES and NO. If left blank NO is used. QUIET = NO # The WARNINGS tag can be used to turn on/off the warning messages that are # generated by doxygen. Possible values are YES and NO. If left blank # NO is used. WARNINGS = YES # If WARN_IF_UNDOCUMENTED is set to YES, then doxygen will generate warnings # for undocumented members. If EXTRACT_ALL is set to YES then this flag will # automatically be disabled. WARN_IF_UNDOCUMENTED = YES # If WARN_IF_DOC_ERROR is set to YES, doxygen will generate warnings for # potential errors in the documentation, such as not documenting some # parameters in a documented function, or documenting parameters that # don't exist or using markup commands wrongly. WARN_IF_DOC_ERROR = YES # The WARN_NO_PARAMDOC option can be enabled to get warnings for # functions that are documented, but have no documentation for their parameters # or return value. If set to NO (the default) doxygen will only warn about # wrong or incomplete parameter documentation, but not about the absence of # documentation. WARN_NO_PARAMDOC = NO # The WARN_FORMAT tag determines the format of the warning messages that # doxygen can produce. The string should contain the $file, $line, and $text # tags, which will be replaced by the file and line number from which the # warning originated and the warning text. Optionally the format may contain # $version, which will be replaced by the version of the file (if it could # be obtained via FILE_VERSION_FILTER) WARN_FORMAT = "$file:$line: $text" # The WARN_LOGFILE tag can be used to specify a file to which warning # and error messages should be written. If left blank the output is written # to stderr. WARN_LOGFILE = #--------------------------------------------------------------------------- # configuration options related to the input files #--------------------------------------------------------------------------- # The INPUT tag can be used to specify the files and/or directories that contain # documented source files. You may enter file names like "myfile.cpp" or # directories like "/usr/src/myproject". Separate the files or directories # with spaces. INPUT = . \ ./doc # This tag can be used to specify the character encoding of the source files # that doxygen parses. Internally doxygen uses the UTF-8 encoding, which is # also the default input encoding. Doxygen uses libiconv (or the iconv built # into libc) for the transcoding. See http://www.gnu.org/software/libiconv for # the list of possible encodings. INPUT_ENCODING = UTF-8 # If the value of the INPUT tag contains directories, you can use the # FILE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp # and *.h) to filter out the source-files in the directories. If left # blank the following patterns are tested: # *.c *.cc *.cxx *.cpp *.c++ *.d *.java *.ii *.ixx *.ipp *.i++ *.inl *.h *.hh # *.hxx *.hpp *.h++ *.idl *.odl *.cs *.php *.php3 *.inc *.m *.mm *.dox *.py # *.f90 *.f *.for *.vhd *.vhdl FILE_PATTERNS = *.h \ *.cxx \ *.txt # The RECURSIVE tag can be used to turn specify whether or not subdirectories # should be searched for input files as well. Possible values are YES and NO. # If left blank NO is used. RECURSIVE = NO # The EXCLUDE tag can be used to specify files and/or directories that should # excluded from the INPUT source files. This way you can easily exclude a # subdirectory from a directory tree whose root is specified with the INPUT tag. # Note that relative paths are relative to directory from which doxygen is run. EXCLUDE = # The EXCLUDE_SYMLINKS tag can be used select whether or not files or # directories that are symbolic links (a Unix file system feature) are excluded # from the input. EXCLUDE_SYMLINKS = NO # If the value of the INPUT tag contains directories, you can use the # EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude # certain files from those directories. Note that the wildcards are matched # against the file with absolute path, so to exclude all test directories # for example use the pattern */test/* EXCLUDE_PATTERNS = # The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names # (namespaces, classes, functions, etc.) that should be excluded from the # output. The symbol name can be a fully qualified name, a word, or if the # wildcard * is used, a substring. Examples: ANamespace, AClass, # AClass::ANamespace, ANamespace::*Test EXCLUDE_SYMBOLS = # The EXAMPLE_PATH tag can be used to specify one or more files or # directories that contain example code fragments that are included (see # the \include command). EXAMPLE_PATH = # If the value of the EXAMPLE_PATH tag contains directories, you can use the # EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp # and *.h) to filter out the source-files in the directories. If left # blank all files are included. EXAMPLE_PATTERNS = # If the EXAMPLE_RECURSIVE tag is set to YES then subdirectories will be # searched for input files to be used with the \include or \dontinclude # commands irrespective of the value of the RECURSIVE tag. # Possible values are YES and NO. If left blank NO is used. EXAMPLE_RECURSIVE = NO # The IMAGE_PATH tag can be used to specify one or more files or # directories that contain image that are included in the documentation (see # the \image command). IMAGE_PATH = # The INPUT_FILTER tag can be used to specify a program that doxygen should # invoke to filter for each input file. Doxygen will invoke the filter program # by executing (via popen()) the command , where # is the value of the INPUT_FILTER tag, and is the name of an # input file. Doxygen will then use the output that the filter program writes # to standard output. # If FILTER_PATTERNS is specified, this tag will be # ignored. INPUT_FILTER = # The FILTER_PATTERNS tag can be used to specify filters on a per file pattern # basis. # Doxygen will compare the file name with each pattern and apply the # filter if there is a match. # The filters are a list of the form: # pattern=filter (like *.cpp=my_cpp_filter). See INPUT_FILTER for further # info on how filters are used. If FILTER_PATTERNS is empty or if # non of the patterns match the file name, INPUT_FILTER is applied. FILTER_PATTERNS = # If the FILTER_SOURCE_FILES tag is set to YES, the input filter (if set using # INPUT_FILTER) will be used to filter the input files when producing source # files to browse (i.e. when SOURCE_BROWSER is set to YES). FILTER_SOURCE_FILES = NO # The FILTER_SOURCE_PATTERNS tag can be used to specify source filters per file # pattern. A pattern will override the setting for FILTER_PATTERN (if any) # and it is also possible to disable source filtering for a specific pattern # using *.ext= (so without naming a filter). This option only has effect when # FILTER_SOURCE_FILES is enabled. FILTER_SOURCE_PATTERNS = #--------------------------------------------------------------------------- # configuration options related to source browsing #--------------------------------------------------------------------------- # If the SOURCE_BROWSER tag is set to YES then a list of source files will # be generated. Documented entities will be cross-referenced with these sources. # Note: To get rid of all source code in the generated output, make sure also # VERBATIM_HEADERS is set to NO. SOURCE_BROWSER = NO # Setting the INLINE_SOURCES tag to YES will include the body # of functions and classes directly in the documentation. INLINE_SOURCES = NO # Setting the STRIP_CODE_COMMENTS tag to YES (the default) will instruct # doxygen to hide any special comment blocks from generated source code # fragments. Normal C and C++ comments will always remain visible. STRIP_CODE_COMMENTS = YES # If the REFERENCED_BY_RELATION tag is set to YES # then for each documented function all documented # functions referencing it will be listed. REFERENCED_BY_RELATION = NO # If the REFERENCES_RELATION tag is set to YES # then for each documented function all documented entities # called/used by that function will be listed. REFERENCES_RELATION = NO # If the REFERENCES_LINK_SOURCE tag is set to YES (the default) # and SOURCE_BROWSER tag is set to YES, then the hyperlinks from # functions in REFERENCES_RELATION and REFERENCED_BY_RELATION lists will # link to the source code. # Otherwise they will link to the documentation. REFERENCES_LINK_SOURCE = NO # If the USE_HTAGS tag is set to YES then the references to source code # will point to the HTML generated by the htags(1) tool instead of doxygen # built-in source browser. The htags tool is part of GNU's global source # tagging system (see http://www.gnu.org/software/global/global.html). You # will need version 4.8.6 or higher. USE_HTAGS = NO # If the VERBATIM_HEADERS tag is set to YES (the default) then Doxygen # will generate a verbatim copy of the header file for each class for # which an include is specified. Set to NO to disable this. VERBATIM_HEADERS = YES #--------------------------------------------------------------------------- # configuration options related to the alphabetical class index #--------------------------------------------------------------------------- # If the ALPHABETICAL_INDEX tag is set to YES, an alphabetical index # of all compounds will be generated. Enable this if the project # contains a lot of classes, structs, unions or interfaces. ALPHABETICAL_INDEX = YES # If the alphabetical index is enabled (see ALPHABETICAL_INDEX) then # the COLS_IN_ALPHA_INDEX tag can be used to specify the number of columns # in which this list will be split (can be a number in the range [1..20]) COLS_IN_ALPHA_INDEX = 5 # In case all classes in a project start with a common prefix, all # classes will be put under the same header in the alphabetical index. # The IGNORE_PREFIX tag can be used to specify one or more prefixes that # should be ignored while generating the index headers. IGNORE_PREFIX = #--------------------------------------------------------------------------- # configuration options related to the HTML output #--------------------------------------------------------------------------- # If the GENERATE_HTML tag is set to YES (the default) Doxygen will # generate HTML output. GENERATE_HTML = YES # The HTML_OUTPUT tag is used to specify where the HTML docs will be put. # If a relative path is entered the value of OUTPUT_DIRECTORY will be # put in front of it. If left blank `html' will be used as the default path. HTML_OUTPUT = html # The HTML_FILE_EXTENSION tag can be used to specify the file extension for # each generated HTML page (for example: .htm,.php,.asp). If it is left blank # doxygen will generate files with .html extension. HTML_FILE_EXTENSION = .html # The HTML_HEADER tag can be used to specify a personal HTML header for # each generated HTML page. If it is left blank doxygen will generate a # standard header. Note that when using a custom header you are responsible # for the proper inclusion of any scripts and style sheets that doxygen # needs, which is dependent on the configuration options used. # It is adviced to generate a default header using "doxygen -w html # header.html footer.html stylesheet.css YourConfigFile" and then modify # that header. Note that the header is subject to change so you typically # have to redo this when upgrading to a newer version of doxygen or when # changing the value of configuration settings such as GENERATE_TREEVIEW! HTML_HEADER = # The HTML_FOOTER tag can be used to specify a personal HTML footer for # each generated HTML page. If it is left blank doxygen will generate a # standard footer. HTML_FOOTER = # The HTML_STYLESHEET tag can be used to specify a user-defined cascading # style sheet that is used by each HTML page. It can be used to # fine-tune the look of the HTML output. If the tag is left blank doxygen # will generate a default style sheet. Note that doxygen will try to copy # the style sheet file to the HTML output directory, so don't put your own # stylesheet in the HTML output directory as well, or it will be erased! HTML_STYLESHEET = # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or # other source files which should be copied to the HTML output directory. Note # that these files will be copied to the base HTML output directory. Use the # $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these # files. In the HTML_STYLESHEET file, use the file name only. Also note that # the files will be copied as-is; there are no commands or markers available. HTML_EXTRA_FILES = # The HTML_COLORSTYLE_HUE tag controls the color of the HTML output. # Doxygen will adjust the colors in the stylesheet and background images # according to this color. Hue is specified as an angle on a colorwheel, # see http://en.wikipedia.org/wiki/Hue for more information. # For instance the value 0 represents red, 60 is yellow, 120 is green, # 180 is cyan, 240 is blue, 300 purple, and 360 is red again. # The allowed range is 0 to 359. HTML_COLORSTYLE_HUE = 220 # The HTML_COLORSTYLE_SAT tag controls the purity (or saturation) of # the colors in the HTML output. For a value of 0 the output will use # grayscales only. A value of 255 will produce the most vivid colors. HTML_COLORSTYLE_SAT = 100 # The HTML_COLORSTYLE_GAMMA tag controls the gamma correction applied to # the luminance component of the colors in the HTML output. Values below # 100 gradually make the output lighter, whereas values above 100 make # the output darker. The value divided by 100 is the actual gamma applied, # so 80 represents a gamma of 0.8, The value 220 represents a gamma of 2.2, # and 100 does not change the gamma. HTML_COLORSTYLE_GAMMA = 80 # If the HTML_TIMESTAMP tag is set to YES then the footer of each generated HTML # page will contain the date and time when the page was generated. Setting # this to NO can help when comparing the output of multiple runs. HTML_TIMESTAMP = YES # If the HTML_ALIGN_MEMBERS tag is set to YES, the members of classes, # files or namespaces will be aligned in HTML using tables. If set to # NO a bullet list will be used. HTML_ALIGN_MEMBERS = YES # If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML # documentation will contain sections that can be hidden and shown after the # page has loaded. For this to work a browser that supports # JavaScript and DHTML is required (for instance Mozilla 1.0+, Firefox # Netscape 6.0+, Internet explorer 5.0+, Konqueror, or Safari). HTML_DYNAMIC_SECTIONS = NO # If the GENERATE_DOCSET tag is set to YES, additional index files # will be generated that can be used as input for Apple's Xcode 3 # integrated development environment, introduced with OSX 10.5 (Leopard). # To create a documentation set, doxygen will generate a Makefile in the # HTML output directory. Running make will produce the docset in that # directory and running "make install" will install the docset in # ~/Library/Developer/Shared/Documentation/DocSets so that Xcode will find # it at startup. # See http://developer.apple.com/tools/creatingdocsetswithdoxygen.html # for more information. GENERATE_DOCSET = NO # When GENERATE_DOCSET tag is set to YES, this tag determines the name of the # feed. A documentation feed provides an umbrella under which multiple # documentation sets from a single provider (such as a company or product suite) # can be grouped. DOCSET_FEEDNAME = "Doxygen generated docs" # When GENERATE_DOCSET tag is set to YES, this tag specifies a string that # should uniquely identify the documentation set bundle. This should be a # reverse domain-name style string, e.g. com.mycompany.MyDocSet. Doxygen # will append .docset to the name. DOCSET_BUNDLE_ID = org.doxygen.Project # When GENERATE_PUBLISHER_ID tag specifies a string that should uniquely identify # the documentation publisher. This should be a reverse domain-name style # string, e.g. com.mycompany.MyDocSet.documentation. DOCSET_PUBLISHER_ID = org.doxygen.Publisher # The GENERATE_PUBLISHER_NAME tag identifies the documentation publisher. DOCSET_PUBLISHER_NAME = Publisher # If the GENERATE_HTMLHELP tag is set to YES, additional index files # will be generated that can be used as input for tools like the # Microsoft HTML help workshop to generate a compiled HTML help file (.chm) # of the generated HTML documentation. GENERATE_HTMLHELP = NO # If the GENERATE_HTMLHELP tag is set to YES, the CHM_FILE tag can # be used to specify the file name of the resulting .chm file. You # can add a path in front of the file if the result should not be # written to the html output directory. CHM_FILE = # If the GENERATE_HTMLHELP tag is set to YES, the HHC_LOCATION tag can # be used to specify the location (absolute path including file name) of # the HTML help compiler (hhc.exe). If non-empty doxygen will try to run # the HTML help compiler on the generated index.hhp. HHC_LOCATION = # If the GENERATE_HTMLHELP tag is set to YES, the GENERATE_CHI flag # controls if a separate .chi index file is generated (YES) or that # it should be included in the master .chm file (NO). GENERATE_CHI = NO # If the GENERATE_HTMLHELP tag is set to YES, the CHM_INDEX_ENCODING # is used to encode HtmlHelp index (hhk), content (hhc) and project file # content. CHM_INDEX_ENCODING = # If the GENERATE_HTMLHELP tag is set to YES, the BINARY_TOC flag # controls whether a binary table of contents is generated (YES) or a # normal table of contents (NO) in the .chm file. BINARY_TOC = NO # The TOC_EXPAND flag can be set to YES to add extra items for group members # to the contents of the HTML help documentation and to the tree view. TOC_EXPAND = NO # If the GENERATE_QHP tag is set to YES and both QHP_NAMESPACE and # QHP_VIRTUAL_FOLDER are set, an additional index file will be generated # that can be used as input for Qt's qhelpgenerator to generate a # Qt Compressed Help (.qch) of the generated HTML documentation. GENERATE_QHP = NO # If the QHG_LOCATION tag is specified, the QCH_FILE tag can # be used to specify the file name of the resulting .qch file. # The path specified is relative to the HTML output folder. QCH_FILE = # The QHP_NAMESPACE tag specifies the namespace to use when generating # Qt Help Project output. For more information please see # http://doc.trolltech.com/qthelpproject.html#namespace QHP_NAMESPACE = # The QHP_VIRTUAL_FOLDER tag specifies the namespace to use when generating # Qt Help Project output. For more information please see # http://doc.trolltech.com/qthelpproject.html#virtual-folders QHP_VIRTUAL_FOLDER = doc # If QHP_CUST_FILTER_NAME is set, it specifies the name of a custom filter to # add. For more information please see # http://doc.trolltech.com/qthelpproject.html#custom-filters QHP_CUST_FILTER_NAME = # The QHP_CUST_FILT_ATTRS tag specifies the list of the attributes of the # custom filter to add. For more information please see # # Qt Help Project / Custom Filters. QHP_CUST_FILTER_ATTRS = # The QHP_SECT_FILTER_ATTRS tag specifies the list of the attributes this # project's # filter section matches. # # Qt Help Project / Filter Attributes. QHP_SECT_FILTER_ATTRS = # If the GENERATE_QHP tag is set to YES, the QHG_LOCATION tag can # be used to specify the location of Qt's qhelpgenerator. # If non-empty doxygen will try to run qhelpgenerator on the generated # .qhp file. QHG_LOCATION = # If the GENERATE_ECLIPSEHELP tag is set to YES, additional index files # will be generated, which together with the HTML files, form an Eclipse help # plugin. To install this plugin and make it available under the help contents # menu in Eclipse, the contents of the directory containing the HTML and XML # files needs to be copied into the plugins directory of eclipse. The name of # the directory within the plugins directory should be the same as # the ECLIPSE_DOC_ID value. After copying Eclipse needs to be restarted before # the help appears. GENERATE_ECLIPSEHELP = NO # A unique identifier for the eclipse help plugin. When installing the plugin # the directory name containing the HTML and XML files should also have # this name. ECLIPSE_DOC_ID = org.doxygen.Project # The DISABLE_INDEX tag can be used to turn on/off the condensed index at # top of each HTML page. The value NO (the default) enables the index and # the value YES disables it. DISABLE_INDEX = NO # The ENUM_VALUES_PER_LINE tag can be used to set the number of enum values # (range [0,1..20]) that doxygen will group on one line in the generated HTML # documentation. Note that a value of 0 will completely suppress the enum # values from appearing in the overview section. ENUM_VALUES_PER_LINE = 4 # The GENERATE_TREEVIEW tag is used to specify whether a tree-like index # structure should be generated to display hierarchical information. # If the tag value is set to YES, a side panel will be generated # containing a tree-like index structure (just like the one that # is generated for HTML Help). For this to work a browser that supports # JavaScript, DHTML, CSS and frames is required (i.e. any modern browser). # Windows users are probably better off using the HTML help feature. GENERATE_TREEVIEW = NO # By enabling USE_INLINE_TREES, doxygen will generate the Groups, Directories, # and Class Hierarchy pages using a tree view instead of an ordered list. USE_INLINE_TREES = NO # If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be # used to set the initial width (in pixels) of the frame in which the tree # is shown. TREEVIEW_WIDTH = 250 # When the EXT_LINKS_IN_WINDOW option is set to YES doxygen will open # links to external symbols imported via tag files in a separate window. EXT_LINKS_IN_WINDOW = NO # Use this tag to change the font size of Latex formulas included # as images in the HTML documentation. The default is 10. Note that # when you change the font size after a successful doxygen run you need # to manually remove any form_*.png images from the HTML output directory # to force them to be regenerated. FORMULA_FONTSIZE = 10 # Use the FORMULA_TRANPARENT tag to determine whether or not the images # generated for formulas are transparent PNGs. Transparent PNGs are # not supported properly for IE 6.0, but are supported on all modern browsers. # Note that when changing this option you need to delete any form_*.png files # in the HTML output before the changes have effect. FORMULA_TRANSPARENT = YES # Enable the USE_MATHJAX option to render LaTeX formulas using MathJax # (see http://www.mathjax.org) which uses client side Javascript for the # rendering instead of using prerendered bitmaps. Use this if you do not # have LaTeX installed or if you want to formulas look prettier in the HTML # output. When enabled you also need to install MathJax separately and # configure the path to it using the MATHJAX_RELPATH option. USE_MATHJAX = NO # When MathJax is enabled you need to specify the location relative to the # HTML output directory using the MATHJAX_RELPATH option. The destination # directory should contain the MathJax.js script. For instance, if the mathjax # directory is located at the same level as the HTML output directory, then # MATHJAX_RELPATH should be ../mathjax. The default value points to the # mathjax.org site, so you can quickly see the result without installing # MathJax, but it is strongly recommended to install a local copy of MathJax # before deployment. MATHJAX_RELPATH = http://www.mathjax.org/mathjax # The MATHJAX_EXTENSIONS tag can be used to specify one or MathJax extension # names that should be enabled during MathJax rendering. MATHJAX_EXTENSIONS = # When the SEARCHENGINE tag is enabled doxygen will generate a search box # for the HTML output. The underlying search engine uses javascript # and DHTML and should work on any modern browser. Note that when using # HTML help (GENERATE_HTMLHELP), Qt help (GENERATE_QHP), or docsets # (GENERATE_DOCSET) there is already a search function so this one should # typically be disabled. For large projects the javascript based search engine # can be slow, then enabling SERVER_BASED_SEARCH may provide a better solution. SEARCHENGINE = NO # When the SERVER_BASED_SEARCH tag is enabled the search engine will be # implemented using a PHP enabled web server instead of at the web client # using Javascript. Doxygen will generate the search PHP script and index # file to put on the web server. The advantage of the server # based approach is that it scales better to large projects and allows # full text search. The disadvantages are that it is more difficult to setup # and does not have live searching capabilities. SERVER_BASED_SEARCH = NO #--------------------------------------------------------------------------- # configuration options related to the LaTeX output #--------------------------------------------------------------------------- # If the GENERATE_LATEX tag is set to YES (the default) Doxygen will # generate Latex output. GENERATE_LATEX = YES # The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put. # If a relative path is entered the value of OUTPUT_DIRECTORY will be # put in front of it. If left blank `latex' will be used as the default path. LATEX_OUTPUT = latex # The LATEX_CMD_NAME tag can be used to specify the LaTeX command name to be # invoked. If left blank `latex' will be used as the default command name. # Note that when enabling USE_PDFLATEX this option is only used for # generating bitmaps for formulas in the HTML output, but not in the # Makefile that is written to the output directory. LATEX_CMD_NAME = latex # The MAKEINDEX_CMD_NAME tag can be used to specify the command name to # generate index for LaTeX. If left blank `makeindex' will be used as the # default command name. MAKEINDEX_CMD_NAME = makeindex # If the COMPACT_LATEX tag is set to YES Doxygen generates more compact # LaTeX documents. This may be useful for small projects and may help to # save some trees in general. COMPACT_LATEX = YES # The PAPER_TYPE tag can be used to set the paper type that is used # by the printer. Possible values are: a4, letter, legal and # executive. If left blank a4wide will be used. PAPER_TYPE = letter # The EXTRA_PACKAGES tag can be to specify one or more names of LaTeX # packages that should be included in the LaTeX output. EXTRA_PACKAGES = # The LATEX_HEADER tag can be used to specify a personal LaTeX header for # the generated latex document. The header should contain everything until # the first chapter. If it is left blank doxygen will generate a # standard header. Notice: only use this tag if you know what you are doing! LATEX_HEADER = # The LATEX_FOOTER tag can be used to specify a personal LaTeX footer for # the generated latex document. The footer should contain everything after # the last chapter. If it is left blank doxygen will generate a # standard footer. Notice: only use this tag if you know what you are doing! LATEX_FOOTER = # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated # is prepared for conversion to pdf (using ps2pdf). The pdf file will # contain links (just like the HTML output) instead of page references # This makes the output suitable for online browsing using a pdf viewer. PDF_HYPERLINKS = YES # If the USE_PDFLATEX tag is set to YES, pdflatex will be used instead of # plain latex in the generated Makefile. Set this option to YES to get a # higher quality PDF documentation. USE_PDFLATEX = YES # If the LATEX_BATCHMODE tag is set to YES, doxygen will add the \\batchmode. # command to the generated LaTeX files. This will instruct LaTeX to keep # running if errors occur, instead of asking the user for help. # This option is also used when generating formulas in HTML. LATEX_BATCHMODE = YES # If LATEX_HIDE_INDICES is set to YES then doxygen will not # include the index chapters (such as File Index, Compound Index, etc.) # in the output. LATEX_HIDE_INDICES = NO # If LATEX_SOURCE_CODE is set to YES then doxygen will include # source code with syntax highlighting in the LaTeX output. # Note that which sources are shown also depends on other settings # such as SOURCE_BROWSER. LATEX_SOURCE_CODE = NO # The LATEX_BIB_STYLE tag can be used to specify the style to use for the # bibliography, e.g. plainnat, or ieeetr. The default style is "plain". See # http://en.wikipedia.org/wiki/BibTeX for more info. LATEX_BIB_STYLE = plain #--------------------------------------------------------------------------- # configuration options related to the RTF output #--------------------------------------------------------------------------- # If the GENERATE_RTF tag is set to YES Doxygen will generate RTF output # The RTF output is optimized for Word 97 and may not look very pretty with # other RTF readers or editors. GENERATE_RTF = NO # The RTF_OUTPUT tag is used to specify where the RTF docs will be put. # If a relative path is entered the value of OUTPUT_DIRECTORY will be # put in front of it. If left blank `rtf' will be used as the default path. RTF_OUTPUT = rtf # If the COMPACT_RTF tag is set to YES Doxygen generates more compact # RTF documents. This may be useful for small projects and may help to # save some trees in general. COMPACT_RTF = NO # If the RTF_HYPERLINKS tag is set to YES, the RTF that is generated # will contain hyperlink fields. The RTF file will # contain links (just like the HTML output) instead of page references. # This makes the output suitable for online browsing using WORD or other # programs which support those fields. # Note: wordpad (write) and others do not support links. RTF_HYPERLINKS = NO # Load stylesheet definitions from file. Syntax is similar to doxygen's # config file, i.e. a series of assignments. You only have to provide # replacements, missing definitions are set to their default value. RTF_STYLESHEET_FILE = # Set optional variables used in the generation of an rtf document. # Syntax is similar to doxygen's config file. RTF_EXTENSIONS_FILE = #--------------------------------------------------------------------------- # configuration options related to the man page output #--------------------------------------------------------------------------- # If the GENERATE_MAN tag is set to YES (the default) Doxygen will # generate man pages GENERATE_MAN = NO # The MAN_OUTPUT tag is used to specify where the man pages will be put. # If a relative path is entered the value of OUTPUT_DIRECTORY will be # put in front of it. If left blank `man' will be used as the default path. MAN_OUTPUT = man # The MAN_EXTENSION tag determines the extension that is added to # the generated man pages (default is the subroutine's section .3) MAN_EXTENSION = .3 # If the MAN_LINKS tag is set to YES and Doxygen generates man output, # then it will generate one additional man file for each entity # documented in the real man page(s). These additional files # only source the real man page, but without them the man command # would be unable to find the correct page. The default is NO. MAN_LINKS = NO #--------------------------------------------------------------------------- # configuration options related to the XML output #--------------------------------------------------------------------------- # If the GENERATE_XML tag is set to YES Doxygen will # generate an XML file that captures the structure of # the code including all documentation. GENERATE_XML = NO # The XML_OUTPUT tag is used to specify where the XML pages will be put. # If a relative path is entered the value of OUTPUT_DIRECTORY will be # put in front of it. If left blank `xml' will be used as the default path. XML_OUTPUT = xml # The XML_SCHEMA tag can be used to specify an XML schema, # which can be used by a validating XML parser to check the # syntax of the XML files. XML_SCHEMA = # The XML_DTD tag can be used to specify an XML DTD, # which can be used by a validating XML parser to check the # syntax of the XML files. XML_DTD = # If the XML_PROGRAMLISTING tag is set to YES Doxygen will # dump the program listings (including syntax highlighting # and cross-referencing information) to the XML output. Note that # enabling this will significantly increase the size of the XML output. XML_PROGRAMLISTING = YES #--------------------------------------------------------------------------- # configuration options for the AutoGen Definitions output #--------------------------------------------------------------------------- # If the GENERATE_AUTOGEN_DEF tag is set to YES Doxygen will # generate an AutoGen Definitions (see autogen.sf.net) file # that captures the structure of the code including all # documentation. Note that this feature is still experimental # and incomplete at the moment. GENERATE_AUTOGEN_DEF = NO #--------------------------------------------------------------------------- # configuration options related to the Perl module output #--------------------------------------------------------------------------- # If the GENERATE_PERLMOD tag is set to YES Doxygen will # generate a Perl module file that captures the structure of # the code including all documentation. Note that this # feature is still experimental and incomplete at the # moment. GENERATE_PERLMOD = NO # If the PERLMOD_LATEX tag is set to YES Doxygen will generate # the necessary Makefile rules, Perl scripts and LaTeX code to be able # to generate PDF and DVI output from the Perl module output. PERLMOD_LATEX = NO # If the PERLMOD_PRETTY tag is set to YES the Perl module output will be # nicely formatted so it can be parsed by a human reader. # This is useful # if you want to understand what is going on. # On the other hand, if this # tag is set to NO the size of the Perl module output will be much smaller # and Perl will parse it just the same. PERLMOD_PRETTY = YES # The names of the make variables in the generated doxyrules.make file # are prefixed with the string contained in PERLMOD_MAKEVAR_PREFIX. # This is useful so different doxyrules.make files included by the same # Makefile don't overwrite each other's variables. PERLMOD_MAKEVAR_PREFIX = #--------------------------------------------------------------------------- # Configuration options related to the preprocessor #--------------------------------------------------------------------------- # If the ENABLE_PREPROCESSING tag is set to YES (the default) Doxygen will # evaluate all C-preprocessor directives found in the sources and include # files. ENABLE_PREPROCESSING = YES # If the MACRO_EXPANSION tag is set to YES Doxygen will expand all macro # names in the source code. If set to NO (the default) only conditional # compilation will be performed. Macro expansion can be done in a controlled # way by setting EXPAND_ONLY_PREDEF to YES. MACRO_EXPANSION = NO # If the EXPAND_ONLY_PREDEF and MACRO_EXPANSION tags are both set to YES # then the macro expansion is limited to the macros specified with the # PREDEFINED and EXPAND_AS_DEFINED tags. EXPAND_ONLY_PREDEF = NO # If the SEARCH_INCLUDES tag is set to YES (the default) the includes files # pointed to by INCLUDE_PATH will be searched when a #include is found. SEARCH_INCLUDES = YES # The INCLUDE_PATH tag can be used to specify one or more directories that # contain include files that are not input files but should be processed by # the preprocessor. INCLUDE_PATH = # You can use the INCLUDE_FILE_PATTERNS tag to specify one or more wildcard # patterns (like *.h and *.hpp) to filter out the header-files in the # directories. If left blank, the patterns specified with FILE_PATTERNS will # be used. INCLUDE_FILE_PATTERNS = # The PREDEFINED tag can be used to specify one or more macro names that # are defined before the preprocessor is started (similar to the -D option of # gcc). The argument of the tag is a list of macros of the form: name # or name=definition (no spaces). If the definition and the = are # omitted =1 is assumed. To prevent a macro definition from being # undefined via #undef or recursively expanded use the := operator # instead of the = operator. PREDEFINED = # If the MACRO_EXPANSION and EXPAND_ONLY_PREDEF tags are set to YES then # this tag can be used to specify a list of macro names that should be expanded. # The macro definition that is found in the sources will be used. # Use the PREDEFINED tag if you want to use a different macro definition that # overrules the definition found in the source code. EXPAND_AS_DEFINED = # If the SKIP_FUNCTION_MACROS tag is set to YES (the default) then # doxygen's preprocessor will remove all references to function-like macros # that are alone on a line, have an all uppercase name, and do not end with a # semicolon, because these will confuse the parser if not removed. SKIP_FUNCTION_MACROS = YES #--------------------------------------------------------------------------- # Configuration::additions related to external references #--------------------------------------------------------------------------- # The TAGFILES option can be used to specify one or more tagfiles. # Optionally an initial location of the external documentation # can be added for each tagfile. The format of a tag file without # this location is as follows: # # TAGFILES = file1 file2 ... # Adding location for the tag files is done as follows: # # TAGFILES = file1=loc1 "file2 = loc2" ... # where "loc1" and "loc2" can be relative or absolute paths or # URLs. If a location is present for each tag, the installdox tool # does not have to be run to correct the links. # Note that each tag file must have a unique name # (where the name does NOT include the path) # If a tag file is not located in the directory in which doxygen # is run, you must also specify the path to the tagfile here. TAGFILES = # When a file name is specified after GENERATE_TAGFILE, doxygen will create # a tag file that is based on the input files it reads. GENERATE_TAGFILE = # If the ALLEXTERNALS tag is set to YES all external classes will be listed # in the class index. If set to NO only the inherited external classes # will be listed. ALLEXTERNALS = NO # If the EXTERNAL_GROUPS tag is set to YES all external groups will be listed # in the modules index. If set to NO, only the current project's groups will # be listed. EXTERNAL_GROUPS = YES # The PERL_PATH should be the absolute path and name of the perl script # interpreter (i.e. the result of `which perl'). PERL_PATH = /usr/bin/perl #--------------------------------------------------------------------------- # Configuration options related to the dot tool #--------------------------------------------------------------------------- # If the CLASS_DIAGRAMS tag is set to YES (the default) Doxygen will # generate a inheritance diagram (in HTML, RTF and LaTeX) for classes with base # or super classes. Setting the tag to NO turns the diagrams off. Note that # this option also works with HAVE_DOT disabled, but it is recommended to # install and use dot, since it yields more powerful graphs. CLASS_DIAGRAMS = YES # You can define message sequence charts within doxygen comments using the \msc # command. Doxygen will then run the mscgen tool (see # http://www.mcternan.me.uk/mscgen/) to produce the chart and insert it in the # documentation. The MSCGEN_PATH tag allows you to specify the directory where # the mscgen tool resides. If left empty the tool is assumed to be found in the # default search path. MSCGEN_PATH = # If set to YES, the inheritance and collaboration graphs will hide # inheritance and usage relations if the target is undocumented # or is not a class. HIDE_UNDOC_RELATIONS = YES # If you set the HAVE_DOT tag to YES then doxygen will assume the dot tool is # available from the path. This tool is part of Graphviz, a graph visualization # toolkit from AT&T and Lucent Bell Labs. The other options in this section # have no effect if this option is set to NO (the default) HAVE_DOT = NO # The DOT_NUM_THREADS specifies the number of dot invocations doxygen is # allowed to run in parallel. When set to 0 (the default) doxygen will # base this on the number of processors available in the system. You can set it # explicitly to a value larger than 0 to get control over the balance # between CPU load and processing speed. DOT_NUM_THREADS = 0 # By default doxygen will use the Helvetica font for all dot files that # doxygen generates. When you want a differently looking font you can specify # the font name using DOT_FONTNAME. You need to make sure dot is able to find # the font, which can be done by putting it in a standard location or by setting # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the # directory containing the font. DOT_FONTNAME = FreeSans # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs. # The default size is 10pt. DOT_FONTSIZE = 10 # By default doxygen will tell dot to use the Helvetica font. # If you specify a different font using DOT_FONTNAME you can use DOT_FONTPATH to # set the path where dot can find it. DOT_FONTPATH = # If the CLASS_GRAPH and HAVE_DOT tags are set to YES then doxygen # will generate a graph for each documented class showing the direct and # indirect inheritance relations. Setting this tag to YES will force the # the CLASS_DIAGRAMS tag to NO. CLASS_GRAPH = YES # If the COLLABORATION_GRAPH and HAVE_DOT tags are set to YES then doxygen # will generate a graph for each documented class showing the direct and # indirect implementation dependencies (inheritance, containment, and # class references variables) of the class with other documented classes. COLLABORATION_GRAPH = YES # If the GROUP_GRAPHS and HAVE_DOT tags are set to YES then doxygen # will generate a graph for groups, showing the direct groups dependencies GROUP_GRAPHS = YES # If the UML_LOOK tag is set to YES doxygen will generate inheritance and # collaboration diagrams in a style similar to the OMG's Unified Modeling # Language. UML_LOOK = NO # If set to YES, the inheritance and collaboration graphs will show the # relations between templates and their instances. TEMPLATE_RELATIONS = NO # If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDE_GRAPH, and HAVE_DOT # tags are set to YES then doxygen will generate a graph for each documented # file showing the direct and indirect include dependencies of the file with # other documented files. INCLUDE_GRAPH = YES # If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDED_BY_GRAPH, and # HAVE_DOT tags are set to YES then doxygen will generate a graph for each # documented header file showing the documented files that directly or # indirectly include this file. INCLUDED_BY_GRAPH = YES # If the CALL_GRAPH and HAVE_DOT options are set to YES then # doxygen will generate a call dependency graph for every global function # or class method. Note that enabling this option will significantly increase # the time of a run. So in most cases it will be better to enable call graphs # for selected functions only using the \callgraph command. 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SAVE_CFLAGS="$CFLAGS" CFLAGS="$CFLAGS -belf" echo "$as_me:$LINENO: checking whether the C compiler needs -belf" >&5 echo $ECHO_N "checking whether the C compiler needs -belf... $ECHO_C" >&6 if test "${lt_cv_cc_needs_belf+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else ac_ext=c ac_cpp='$CPP $CPPFLAGS' ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ac_compiler_gnu=$ac_cv_c_compiler_gnu cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ int main () { ; return 0; } _ACEOF rm -f conftest.$ac_objext conftest$ac_exeext if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5 (eval $ac_link) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } && { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; } && { ac_try='test -s conftest$ac_exeext' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; }; then lt_cv_cc_needs_belf=yes else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 lt_cv_cc_needs_belf=no fi rm -f conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext ac_ext=c ac_cpp='$CPP $CPPFLAGS' ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ac_compiler_gnu=$ac_cv_c_compiler_gnu fi echo "$as_me:$LINENO: result: $lt_cv_cc_needs_belf" >&5 echo "${ECHO_T}$lt_cv_cc_needs_belf" >&6 if test x"$lt_cv_cc_needs_belf" != x"yes"; then # this is probably gcc 2.8.0, egcs 1.0 or newer; no need for -belf CFLAGS="$SAVE_CFLAGS" fi ;; sparc*-*solaris*) # Find out which ABI we are using. echo 'int i;' > conftest.$ac_ext if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5 (eval $ac_compile) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; then case `/usr/bin/file conftest.o` in *64-bit*) case $lt_cv_prog_gnu_ld in yes*) LD="${LD-ld} -m elf64_sparc" ;; *) LD="${LD-ld} -64" ;; esac ;; esac fi rm -rf conftest* ;; esac need_locks="$enable_libtool_lock" ac_ext=c ac_cpp='$CPP $CPPFLAGS' ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ac_compiler_gnu=$ac_cv_c_compiler_gnu echo "$as_me:$LINENO: checking how to run the C preprocessor" >&5 echo $ECHO_N "checking how to run the C preprocessor... $ECHO_C" >&6 # On Suns, sometimes $CPP names a directory. if test -n "$CPP" && test -d "$CPP"; then CPP= fi if test -z "$CPP"; then if test "${ac_cv_prog_CPP+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else # Double quotes because CPP needs to be expanded for CPP in "$CC -E" "$CC -E -traditional-cpp" "/lib/cpp" do ac_preproc_ok=false for ac_c_preproc_warn_flag in '' yes do # Use a header file that comes with gcc, so configuring glibc # with a fresh cross-compiler works. # Prefer to if __STDC__ is defined, since # exists even on freestanding compilers. # On the NeXT, cc -E runs the code through the compiler's parser, # not just through cpp. "Syntax error" is here to catch this case. cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ #ifdef __STDC__ # include #else # include #endif Syntax error _ACEOF if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5 (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } >/dev/null; then if test -s conftest.err; then ac_cpp_err=$ac_c_preproc_warn_flag ac_cpp_err=$ac_cpp_err$ac_c_werror_flag else ac_cpp_err= fi else ac_cpp_err=yes fi if test -z "$ac_cpp_err"; then : else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 # Broken: fails on valid input. continue fi rm -f conftest.err conftest.$ac_ext # OK, works on sane cases. Now check whether non-existent headers # can be detected and how. cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ #include _ACEOF if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5 (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } >/dev/null; then if test -s conftest.err; then ac_cpp_err=$ac_c_preproc_warn_flag ac_cpp_err=$ac_cpp_err$ac_c_werror_flag else ac_cpp_err= fi else ac_cpp_err=yes fi if test -z "$ac_cpp_err"; then # Broken: success on invalid input. continue else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 # Passes both tests. ac_preproc_ok=: break fi rm -f conftest.err conftest.$ac_ext done # Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped. rm -f conftest.err conftest.$ac_ext if $ac_preproc_ok; then break fi done ac_cv_prog_CPP=$CPP fi CPP=$ac_cv_prog_CPP else ac_cv_prog_CPP=$CPP fi echo "$as_me:$LINENO: result: $CPP" >&5 echo "${ECHO_T}$CPP" >&6 ac_preproc_ok=false for ac_c_preproc_warn_flag in '' yes do # Use a header file that comes with gcc, so configuring glibc # with a fresh cross-compiler works. # Prefer to if __STDC__ is defined, since # exists even on freestanding compilers. # On the NeXT, cc -E runs the code through the compiler's parser, # not just through cpp. "Syntax error" is here to catch this case. cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ #ifdef __STDC__ # include #else # include #endif Syntax error _ACEOF if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5 (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } >/dev/null; then if test -s conftest.err; then ac_cpp_err=$ac_c_preproc_warn_flag ac_cpp_err=$ac_cpp_err$ac_c_werror_flag else ac_cpp_err= fi else ac_cpp_err=yes fi if test -z "$ac_cpp_err"; then : else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 # Broken: fails on valid input. continue fi rm -f conftest.err conftest.$ac_ext # OK, works on sane cases. Now check whether non-existent headers # can be detected and how. cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ #include _ACEOF if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5 (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } >/dev/null; then if test -s conftest.err; then ac_cpp_err=$ac_c_preproc_warn_flag ac_cpp_err=$ac_cpp_err$ac_c_werror_flag else ac_cpp_err= fi else ac_cpp_err=yes fi if test -z "$ac_cpp_err"; then # Broken: success on invalid input. continue else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 # Passes both tests. ac_preproc_ok=: break fi rm -f conftest.err conftest.$ac_ext done # Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped. rm -f conftest.err conftest.$ac_ext if $ac_preproc_ok; then : else { { echo "$as_me:$LINENO: error: C preprocessor \"$CPP\" fails sanity check See \`config.log' for more details." >&5 echo "$as_me: error: C preprocessor \"$CPP\" fails sanity check See \`config.log' for more details." >&2;} { (exit 1); exit 1; }; } fi ac_ext=c ac_cpp='$CPP $CPPFLAGS' ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ac_compiler_gnu=$ac_cv_c_compiler_gnu echo "$as_me:$LINENO: checking for ANSI C header files" >&5 echo $ECHO_N "checking for ANSI C header files... $ECHO_C" >&6 if test "${ac_cv_header_stdc+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ #include #include #include #include int main () { ; return 0; } _ACEOF rm -f conftest.$ac_objext if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5 (eval $ac_compile) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } && { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; } && { ac_try='test -s conftest.$ac_objext' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; }; then ac_cv_header_stdc=yes else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 ac_cv_header_stdc=no fi rm -f conftest.err conftest.$ac_objext conftest.$ac_ext if test $ac_cv_header_stdc = yes; then # SunOS 4.x string.h does not declare mem*, contrary to ANSI. cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ #include _ACEOF if (eval "$ac_cpp conftest.$ac_ext") 2>&5 | $EGREP "memchr" >/dev/null 2>&1; then : else ac_cv_header_stdc=no fi rm -f conftest* fi if test $ac_cv_header_stdc = yes; then # ISC 2.0.2 stdlib.h does not declare free, contrary to ANSI. cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ #include _ACEOF if (eval "$ac_cpp conftest.$ac_ext") 2>&5 | $EGREP "free" >/dev/null 2>&1; then : else ac_cv_header_stdc=no fi rm -f conftest* fi if test $ac_cv_header_stdc = yes; then # /bin/cc in Irix-4.0.5 gets non-ANSI ctype macros unless using -ansi. if test "$cross_compiling" = yes; then : else cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ #include #if ((' ' & 0x0FF) == 0x020) # define ISLOWER(c) ('a' <= (c) && (c) <= 'z') # define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #else # define ISLOWER(c) \ (('a' <= (c) && (c) <= 'i') \ || ('j' <= (c) && (c) <= 'r') \ || ('s' <= (c) && (c) <= 'z')) # define TOUPPER(c) (ISLOWER(c) ? ((c) | 0x40) : (c)) #endif #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main () { int i; for (i = 0; i < 256; i++) if (XOR (islower (i), ISLOWER (i)) || toupper (i) != TOUPPER (i)) exit(2); exit (0); } _ACEOF rm -f conftest$ac_exeext if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5 (eval $ac_link) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } && { ac_try='./conftest$ac_exeext' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; }; then : else echo "$as_me: program exited with status $ac_status" >&5 echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 ( exit $ac_status ) ac_cv_header_stdc=no fi rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext fi fi fi echo "$as_me:$LINENO: result: $ac_cv_header_stdc" >&5 echo "${ECHO_T}$ac_cv_header_stdc" >&6 if test $ac_cv_header_stdc = yes; then cat >>confdefs.h <<\_ACEOF #define STDC_HEADERS 1 _ACEOF fi # On IRIX 5.3, sys/types and inttypes.h are conflicting. for ac_header in sys/types.h sys/stat.h stdlib.h string.h memory.h strings.h \ inttypes.h stdint.h unistd.h do as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh` echo "$as_me:$LINENO: checking for $ac_header" >&5 echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6 if eval "test \"\${$as_ac_Header+set}\" = set"; then echo $ECHO_N "(cached) $ECHO_C" >&6 else cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ $ac_includes_default #include <$ac_header> _ACEOF rm -f conftest.$ac_objext if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5 (eval $ac_compile) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } && { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; } && { ac_try='test -s conftest.$ac_objext' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; }; then eval "$as_ac_Header=yes" else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 eval "$as_ac_Header=no" fi rm -f conftest.err conftest.$ac_objext conftest.$ac_ext fi echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5 echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6 if test `eval echo '${'$as_ac_Header'}'` = yes; then cat >>confdefs.h <<_ACEOF #define `echo "HAVE_$ac_header" | $as_tr_cpp` 1 _ACEOF fi done for ac_header in dlfcn.h do as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh` if eval "test \"\${$as_ac_Header+set}\" = set"; then echo "$as_me:$LINENO: checking for $ac_header" >&5 echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6 if eval "test \"\${$as_ac_Header+set}\" = set"; then echo $ECHO_N "(cached) $ECHO_C" >&6 fi echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5 echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6 else # Is the header compilable? echo "$as_me:$LINENO: checking $ac_header usability" >&5 echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6 cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ $ac_includes_default #include <$ac_header> _ACEOF rm -f conftest.$ac_objext if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5 (eval $ac_compile) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } && { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; } && { ac_try='test -s conftest.$ac_objext' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; }; then ac_header_compiler=yes else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 ac_header_compiler=no fi rm -f conftest.err conftest.$ac_objext conftest.$ac_ext echo "$as_me:$LINENO: result: $ac_header_compiler" >&5 echo "${ECHO_T}$ac_header_compiler" >&6 # Is the header present? echo "$as_me:$LINENO: checking $ac_header presence" >&5 echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6 cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ #include <$ac_header> _ACEOF if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5 (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } >/dev/null; then if test -s conftest.err; then ac_cpp_err=$ac_c_preproc_warn_flag ac_cpp_err=$ac_cpp_err$ac_c_werror_flag else ac_cpp_err= fi else ac_cpp_err=yes fi if test -z "$ac_cpp_err"; then ac_header_preproc=yes else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 ac_header_preproc=no fi rm -f conftest.err conftest.$ac_ext echo "$as_me:$LINENO: result: $ac_header_preproc" >&5 echo "${ECHO_T}$ac_header_preproc" >&6 # So? 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It is not # nice to cause kernel panics so lets avoid the loop below. # First set a reasonable default. lt_cv_sys_max_cmd_len=16384 # if test -x /sbin/sysconfig; then case `/sbin/sysconfig -q proc exec_disable_arg_limit` in *1*) lt_cv_sys_max_cmd_len=-1 ;; esac fi ;; sco3.2v5*) lt_cv_sys_max_cmd_len=102400 ;; sysv5* | sco5v6* | sysv4.2uw2*) kargmax=`grep ARG_MAX /etc/conf/cf.d/stune 2>/dev/null` if test -n "$kargmax"; then lt_cv_sys_max_cmd_len=`echo $kargmax | sed 's/.*[ ]//'` else lt_cv_sys_max_cmd_len=32768 fi ;; *) # If test is not a shell built-in, we'll probably end up computing a # maximum length that is only half of the actual maximum length, but # we can't tell. SHELL=${SHELL-${CONFIG_SHELL-/bin/sh}} while (test "X"`$SHELL $0 --fallback-echo "X$teststring" 2>/dev/null` \ = "XX$teststring") >/dev/null 2>&1 && new_result=`expr "X$teststring" : ".*" 2>&1` && lt_cv_sys_max_cmd_len=$new_result && test $i != 17 # 1/2 MB should be enough do i=`expr $i + 1` teststring=$teststring$teststring done teststring= # Add a significant safety factor because C++ compilers can tack on massive # amounts of additional arguments before passing them to the linker. # It appears as though 1/2 is a usable value. lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 2` ;; esac fi if test -n $lt_cv_sys_max_cmd_len ; then echo "$as_me:$LINENO: result: $lt_cv_sys_max_cmd_len" >&5 echo "${ECHO_T}$lt_cv_sys_max_cmd_len" >&6 else echo "$as_me:$LINENO: result: none" >&5 echo "${ECHO_T}none" >&6 fi # Check for command to grab the raw symbol name followed by C symbol from nm. echo "$as_me:$LINENO: checking command to parse $NM output from $compiler object" >&5 echo $ECHO_N "checking command to parse $NM output from $compiler object... $ECHO_C" >&6 if test "${lt_cv_sys_global_symbol_pipe+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else # These are sane defaults that work on at least a few old systems. # [They come from Ultrix. What could be older than Ultrix?!! ;)] # Character class describing NM global symbol codes. symcode='[BCDEGRST]' # Regexp to match symbols that can be accessed directly from C. sympat='\([_A-Za-z][_A-Za-z0-9]*\)' # Transform an extracted symbol line into a proper C declaration lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^. .* \(.*\)$/extern int \1;/p'" # Transform an extracted symbol line into symbol name and symbol address lt_cv_sys_global_symbol_to_c_name_address="sed -n -e 's/^: \([^ ]*\) $/ {\\\"\1\\\", (lt_ptr) 0},/p' -e 's/^$symcode \([^ ]*\) \([^ ]*\)$/ {\"\2\", (lt_ptr) \&\2},/p'" # Define system-specific variables. case $host_os in aix*) symcode='[BCDT]' ;; cygwin* | mingw* | pw32*) symcode='[ABCDGISTW]' ;; hpux*) # Its linker distinguishes data from code symbols if test "$host_cpu" = ia64; then symcode='[ABCDEGRST]' fi lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" lt_cv_sys_global_symbol_to_c_name_address="sed -n -e 's/^: \([^ ]*\) $/ {\\\"\1\\\", (lt_ptr) 0},/p' -e 's/^$symcode* \([^ ]*\) \([^ ]*\)$/ {\"\2\", (lt_ptr) \&\2},/p'" ;; linux*) if test "$host_cpu" = ia64; then symcode='[ABCDGIRSTW]' lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" lt_cv_sys_global_symbol_to_c_name_address="sed -n -e 's/^: \([^ ]*\) $/ {\\\"\1\\\", (lt_ptr) 0},/p' -e 's/^$symcode* \([^ ]*\) \([^ ]*\)$/ {\"\2\", (lt_ptr) \&\2},/p'" fi ;; irix* | nonstopux*) symcode='[BCDEGRST]' ;; osf*) symcode='[BCDEGQRST]' ;; solaris*) symcode='[BDRT]' ;; sco3.2v5*) symcode='[DT]' ;; sysv4.2uw2*) symcode='[DT]' ;; sysv5* | sco5v6* | unixware* | OpenUNIX*) symcode='[ABDT]' ;; sysv4) symcode='[DFNSTU]' ;; esac # Handle CRLF in mingw tool chain opt_cr= case $build_os in mingw*) opt_cr=`echo 'x\{0,1\}' | tr x '\015'` # option cr in regexp ;; esac # If we're using GNU nm, then use its standard symbol codes. case `$NM -V 2>&1` in *GNU* | *'with BFD'*) symcode='[ABCDGIRSTW]' ;; esac # Try without a prefix undercore, then with it. for ac_symprfx in "" "_"; do # Transform symcode, sympat, and symprfx into a raw symbol and a C symbol. symxfrm="\\1 $ac_symprfx\\2 \\2" # Write the raw and C identifiers. lt_cv_sys_global_symbol_pipe="sed -n -e 's/^.*[ ]\($symcode$symcode*\)[ ][ ]*$ac_symprfx$sympat$opt_cr$/$symxfrm/p'" # Check to see that the pipe works correctly. pipe_works=no rm -f conftest* cat > conftest.$ac_ext <&5 (eval $ac_compile) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; then # Now try to grab the symbols. nlist=conftest.nm if { (eval echo "$as_me:$LINENO: \"$NM conftest.$ac_objext \| $lt_cv_sys_global_symbol_pipe \> $nlist\"") >&5 (eval $NM conftest.$ac_objext \| $lt_cv_sys_global_symbol_pipe \> $nlist) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } && test -s "$nlist"; then # Try sorting and uniquifying the output. if sort "$nlist" | uniq > "$nlist"T; then mv -f "$nlist"T "$nlist" else rm -f "$nlist"T fi # Make sure that we snagged all the symbols we need. if grep ' nm_test_var$' "$nlist" >/dev/null; then if grep ' nm_test_func$' "$nlist" >/dev/null; then cat < conftest.$ac_ext #ifdef __cplusplus extern "C" { #endif EOF # Now generate the symbol file. eval "$lt_cv_sys_global_symbol_to_cdecl"' < "$nlist" | grep -v main >> conftest.$ac_ext' cat <> conftest.$ac_ext #if defined (__STDC__) && __STDC__ # define lt_ptr_t void * #else # define lt_ptr_t char * # define const #endif /* The mapping between symbol names and symbols. */ const struct { const char *name; lt_ptr_t address; } lt_preloaded_symbols[] = { EOF $SED "s/^$symcode$symcode* \(.*\) \(.*\)$/ {\"\2\", (lt_ptr_t) \&\2},/" < "$nlist" | grep -v main >> conftest.$ac_ext cat <<\EOF >> conftest.$ac_ext {0, (lt_ptr_t) 0} }; #ifdef __cplusplus } #endif EOF # Now try linking the two files. mv conftest.$ac_objext conftstm.$ac_objext lt_save_LIBS="$LIBS" lt_save_CFLAGS="$CFLAGS" LIBS="conftstm.$ac_objext" CFLAGS="$CFLAGS$lt_prog_compiler_no_builtin_flag" if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5 (eval $ac_link) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } && test -s conftest${ac_exeext}; then pipe_works=yes fi LIBS="$lt_save_LIBS" CFLAGS="$lt_save_CFLAGS" else echo "cannot find nm_test_func in $nlist" >&5 fi else echo "cannot find nm_test_var in $nlist" >&5 fi else echo "cannot run $lt_cv_sys_global_symbol_pipe" >&5 fi else echo "$progname: failed program was:" >&5 cat conftest.$ac_ext >&5 fi rm -f conftest* conftst* # Do not use the global_symbol_pipe unless it works. if test "$pipe_works" = yes; then break else lt_cv_sys_global_symbol_pipe= fi done fi if test -z "$lt_cv_sys_global_symbol_pipe"; then lt_cv_sys_global_symbol_to_cdecl= fi if test -z "$lt_cv_sys_global_symbol_pipe$lt_cv_sys_global_symbol_to_cdecl"; then echo "$as_me:$LINENO: result: failed" >&5 echo "${ECHO_T}failed" >&6 else echo "$as_me:$LINENO: result: ok" >&5 echo "${ECHO_T}ok" >&6 fi echo "$as_me:$LINENO: checking for objdir" >&5 echo $ECHO_N "checking for objdir... $ECHO_C" >&6 if test "${lt_cv_objdir+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else rm -f .libs 2>/dev/null mkdir .libs 2>/dev/null if test -d .libs; then lt_cv_objdir=.libs else # MS-DOS does not allow filenames that begin with a dot. lt_cv_objdir=_libs fi rmdir .libs 2>/dev/null fi echo "$as_me:$LINENO: result: $lt_cv_objdir" >&5 echo "${ECHO_T}$lt_cv_objdir" >&6 objdir=$lt_cv_objdir case $host_os in aix3*) # AIX sometimes has problems with the GCC collect2 program. For some # reason, if we set the COLLECT_NAMES environment variable, the problems # vanish in a puff of smoke. if test "X${COLLECT_NAMES+set}" != Xset; then COLLECT_NAMES= export COLLECT_NAMES fi ;; esac # Sed substitution that helps us do robust quoting. It backslashifies # metacharacters that are still active within double-quoted strings. Xsed='sed -e 1s/^X//' sed_quote_subst='s/\([\\"\\`$\\\\]\)/\\\1/g' # Same as above, but do not quote variable references. double_quote_subst='s/\([\\"\\`\\\\]\)/\\\1/g' # Sed substitution to delay expansion of an escaped shell variable in a # double_quote_subst'ed string. delay_variable_subst='s/\\\\\\\\\\\$/\\\\\\$/g' # Sed substitution to avoid accidental globbing in evaled expressions no_glob_subst='s/\*/\\\*/g' # Constants: rm="rm -f" # Global variables: default_ofile=libtool can_build_shared=yes # All known linkers require a `.a' archive for static linking (except MSVC, # which needs '.lib'). libext=a ltmain="$ac_aux_dir/ltmain.sh" ofile="$default_ofile" with_gnu_ld="$lt_cv_prog_gnu_ld" if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}ar", so it can be a program name with args. set dummy ${ac_tool_prefix}ar; ac_word=$2 echo "$as_me:$LINENO: checking for $ac_word" >&5 echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6 if test "${ac_cv_prog_AR+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else if test -n "$AR"; then ac_cv_prog_AR="$AR" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_AR="${ac_tool_prefix}ar" echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done fi fi AR=$ac_cv_prog_AR if test -n "$AR"; then echo "$as_me:$LINENO: result: $AR" >&5 echo "${ECHO_T}$AR" >&6 else echo "$as_me:$LINENO: result: no" >&5 echo "${ECHO_T}no" >&6 fi fi if test -z "$ac_cv_prog_AR"; then ac_ct_AR=$AR # Extract the first word of "ar", so it can be a program name with args. set dummy ar; ac_word=$2 echo "$as_me:$LINENO: checking for $ac_word" >&5 echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6 if test "${ac_cv_prog_ac_ct_AR+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else if test -n "$ac_ct_AR"; then ac_cv_prog_ac_ct_AR="$ac_ct_AR" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_AR="ar" echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done test -z "$ac_cv_prog_ac_ct_AR" && ac_cv_prog_ac_ct_AR="false" fi fi ac_ct_AR=$ac_cv_prog_ac_ct_AR if test -n "$ac_ct_AR"; then echo "$as_me:$LINENO: result: $ac_ct_AR" >&5 echo "${ECHO_T}$ac_ct_AR" >&6 else echo "$as_me:$LINENO: result: no" >&5 echo "${ECHO_T}no" >&6 fi AR=$ac_ct_AR else AR="$ac_cv_prog_AR" fi if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}ranlib", so it can be a program name with args. set dummy ${ac_tool_prefix}ranlib; ac_word=$2 echo "$as_me:$LINENO: checking for $ac_word" >&5 echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6 if test "${ac_cv_prog_RANLIB+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else if test -n "$RANLIB"; then ac_cv_prog_RANLIB="$RANLIB" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_RANLIB="${ac_tool_prefix}ranlib" echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done fi fi RANLIB=$ac_cv_prog_RANLIB if test -n "$RANLIB"; then echo "$as_me:$LINENO: result: $RANLIB" >&5 echo "${ECHO_T}$RANLIB" >&6 else echo "$as_me:$LINENO: result: no" >&5 echo "${ECHO_T}no" >&6 fi fi if test -z "$ac_cv_prog_RANLIB"; then ac_ct_RANLIB=$RANLIB # Extract the first word of "ranlib", so it can be a program name with args. set dummy ranlib; ac_word=$2 echo "$as_me:$LINENO: checking for $ac_word" >&5 echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6 if test "${ac_cv_prog_ac_ct_RANLIB+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else if test -n "$ac_ct_RANLIB"; then ac_cv_prog_ac_ct_RANLIB="$ac_ct_RANLIB" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_RANLIB="ranlib" echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done test -z "$ac_cv_prog_ac_ct_RANLIB" && ac_cv_prog_ac_ct_RANLIB=":" fi fi ac_ct_RANLIB=$ac_cv_prog_ac_ct_RANLIB if test -n "$ac_ct_RANLIB"; then echo "$as_me:$LINENO: result: $ac_ct_RANLIB" >&5 echo "${ECHO_T}$ac_ct_RANLIB" >&6 else echo "$as_me:$LINENO: result: no" >&5 echo "${ECHO_T}no" >&6 fi RANLIB=$ac_ct_RANLIB else RANLIB="$ac_cv_prog_RANLIB" fi if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}strip", so it can be a program name with args. set dummy ${ac_tool_prefix}strip; ac_word=$2 echo "$as_me:$LINENO: checking for $ac_word" >&5 echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6 if test "${ac_cv_prog_STRIP+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else if test -n "$STRIP"; then ac_cv_prog_STRIP="$STRIP" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_STRIP="${ac_tool_prefix}strip" echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done fi fi STRIP=$ac_cv_prog_STRIP if test -n "$STRIP"; then echo "$as_me:$LINENO: result: $STRIP" >&5 echo "${ECHO_T}$STRIP" >&6 else echo "$as_me:$LINENO: result: no" >&5 echo "${ECHO_T}no" >&6 fi fi if test -z "$ac_cv_prog_STRIP"; then ac_ct_STRIP=$STRIP # Extract the first word of "strip", so it can be a program name with args. set dummy strip; ac_word=$2 echo "$as_me:$LINENO: checking for $ac_word" >&5 echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6 if test "${ac_cv_prog_ac_ct_STRIP+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else if test -n "$ac_ct_STRIP"; then ac_cv_prog_ac_ct_STRIP="$ac_ct_STRIP" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_STRIP="strip" echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done test -z "$ac_cv_prog_ac_ct_STRIP" && ac_cv_prog_ac_ct_STRIP=":" fi fi ac_ct_STRIP=$ac_cv_prog_ac_ct_STRIP if test -n "$ac_ct_STRIP"; then echo "$as_me:$LINENO: result: $ac_ct_STRIP" >&5 echo "${ECHO_T}$ac_ct_STRIP" >&6 else echo "$as_me:$LINENO: result: no" >&5 echo "${ECHO_T}no" >&6 fi STRIP=$ac_ct_STRIP else STRIP="$ac_cv_prog_STRIP" fi old_CC="$CC" old_CFLAGS="$CFLAGS" # Set sane defaults for various variables test -z "$AR" && AR=ar test -z "$AR_FLAGS" && AR_FLAGS=cru test -z "$AS" && AS=as test -z "$CC" && CC=cc test -z "$LTCC" && LTCC=$CC test -z "$LTCFLAGS" && LTCFLAGS=$CFLAGS test -z "$DLLTOOL" && DLLTOOL=dlltool test -z "$LD" && LD=ld test -z "$LN_S" && LN_S="ln -s" test -z "$MAGIC_CMD" && MAGIC_CMD=file test -z "$NM" && NM=nm test -z "$SED" && SED=sed test -z "$OBJDUMP" && OBJDUMP=objdump test -z "$RANLIB" && RANLIB=: test -z "$STRIP" && STRIP=: test -z "$ac_objext" && ac_objext=o # Determine commands to create old-style static archives. old_archive_cmds='$AR $AR_FLAGS $oldlib$oldobjs$old_deplibs' old_postinstall_cmds='chmod 644 $oldlib' old_postuninstall_cmds= if test -n "$RANLIB"; then case $host_os in openbsd*) old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB -t \$oldlib" ;; *) old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB \$oldlib" ;; esac old_archive_cmds="$old_archive_cmds~\$RANLIB \$oldlib" fi for cc_temp in $compiler""; do case $cc_temp in compile | *[\\/]compile | ccache | *[\\/]ccache ) ;; distcc | *[\\/]distcc | purify | *[\\/]purify ) ;; \-*) ;; *) break;; esac done cc_basename=`$echo "X$cc_temp" | $Xsed -e 's%.*/%%' -e "s%^$host_alias-%%"` # Only perform the check for file, if the check method requires it case $deplibs_check_method in file_magic*) if test "$file_magic_cmd" = '$MAGIC_CMD'; then echo "$as_me:$LINENO: checking for ${ac_tool_prefix}file" >&5 echo $ECHO_N "checking for ${ac_tool_prefix}file... $ECHO_C" >&6 if test "${lt_cv_path_MAGIC_CMD+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else case $MAGIC_CMD in [\\/*] | ?:[\\/]*) lt_cv_path_MAGIC_CMD="$MAGIC_CMD" # Let the user override the test with a path. ;; *) lt_save_MAGIC_CMD="$MAGIC_CMD" lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR ac_dummy="/usr/bin$PATH_SEPARATOR$PATH" for ac_dir in $ac_dummy; do IFS="$lt_save_ifs" test -z "$ac_dir" && ac_dir=. if test -f $ac_dir/${ac_tool_prefix}file; then lt_cv_path_MAGIC_CMD="$ac_dir/${ac_tool_prefix}file" if test -n "$file_magic_test_file"; then case $deplibs_check_method in "file_magic "*) file_magic_regex=`expr "$deplibs_check_method" : "file_magic \(.*\)"` MAGIC_CMD="$lt_cv_path_MAGIC_CMD" if eval $file_magic_cmd \$file_magic_test_file 2> /dev/null | $EGREP "$file_magic_regex" > /dev/null; then : else cat <&2 *** Warning: the command libtool uses to detect shared libraries, *** $file_magic_cmd, produces output that libtool cannot recognize. *** The result is that libtool may fail to recognize shared libraries *** as such. This will affect the creation of libtool libraries that *** depend on shared libraries, but programs linked with such libtool *** libraries will work regardless of this problem. Nevertheless, you *** may want to report the problem to your system manager and/or to *** bug-libtool@gnu.org EOF fi ;; esac fi break fi done IFS="$lt_save_ifs" MAGIC_CMD="$lt_save_MAGIC_CMD" ;; esac fi MAGIC_CMD="$lt_cv_path_MAGIC_CMD" if test -n "$MAGIC_CMD"; then echo "$as_me:$LINENO: result: $MAGIC_CMD" >&5 echo "${ECHO_T}$MAGIC_CMD" >&6 else echo "$as_me:$LINENO: result: no" >&5 echo "${ECHO_T}no" >&6 fi if test -z "$lt_cv_path_MAGIC_CMD"; then if test -n "$ac_tool_prefix"; then echo "$as_me:$LINENO: checking for file" >&5 echo $ECHO_N "checking for file... $ECHO_C" >&6 if test "${lt_cv_path_MAGIC_CMD+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else case $MAGIC_CMD in [\\/*] | ?:[\\/]*) lt_cv_path_MAGIC_CMD="$MAGIC_CMD" # Let the user override the test with a path. ;; *) lt_save_MAGIC_CMD="$MAGIC_CMD" lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR ac_dummy="/usr/bin$PATH_SEPARATOR$PATH" for ac_dir in $ac_dummy; do IFS="$lt_save_ifs" test -z "$ac_dir" && ac_dir=. if test -f $ac_dir/file; then lt_cv_path_MAGIC_CMD="$ac_dir/file" if test -n "$file_magic_test_file"; then case $deplibs_check_method in "file_magic "*) file_magic_regex=`expr "$deplibs_check_method" : "file_magic \(.*\)"` MAGIC_CMD="$lt_cv_path_MAGIC_CMD" if eval $file_magic_cmd \$file_magic_test_file 2> /dev/null | $EGREP "$file_magic_regex" > /dev/null; then : else cat <&2 *** Warning: the command libtool uses to detect shared libraries, *** $file_magic_cmd, produces output that libtool cannot recognize. *** The result is that libtool may fail to recognize shared libraries *** as such. This will affect the creation of libtool libraries that *** depend on shared libraries, but programs linked with such libtool *** libraries will work regardless of this problem. Nevertheless, you *** may want to report the problem to your system manager and/or to *** bug-libtool@gnu.org EOF fi ;; esac fi break fi done IFS="$lt_save_ifs" MAGIC_CMD="$lt_save_MAGIC_CMD" ;; esac fi MAGIC_CMD="$lt_cv_path_MAGIC_CMD" if test -n "$MAGIC_CMD"; then echo "$as_me:$LINENO: result: $MAGIC_CMD" >&5 echo "${ECHO_T}$MAGIC_CMD" >&6 else echo "$as_me:$LINENO: result: no" >&5 echo "${ECHO_T}no" >&6 fi else MAGIC_CMD=: fi fi fi ;; esac enable_dlopen=no enable_win32_dll=no # Check whether --enable-libtool-lock or --disable-libtool-lock was given. if test "${enable_libtool_lock+set}" = set; then enableval="$enable_libtool_lock" fi; test "x$enable_libtool_lock" != xno && enable_libtool_lock=yes # Check whether --with-pic or --without-pic was given. if test "${with_pic+set}" = set; then withval="$with_pic" pic_mode="$withval" else pic_mode=default fi; test -z "$pic_mode" && pic_mode=default # Use C for the default configuration in the libtool script tagname= lt_save_CC="$CC" ac_ext=c ac_cpp='$CPP $CPPFLAGS' ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ac_compiler_gnu=$ac_cv_c_compiler_gnu # Source file extension for C test sources. ac_ext=c # Object file extension for compiled C test sources. objext=o objext=$objext # Code to be used in simple compile tests lt_simple_compile_test_code="int some_variable = 0;\n" # Code to be used in simple link tests lt_simple_link_test_code='int main(){return(0);}\n' # If no C compiler was specified, use CC. LTCC=${LTCC-"$CC"} # If no C compiler flags were specified, use CFLAGS. 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Moving up from 0x10000000 also allows more sbrk(2) space. archive_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib' archive_expsym_cmds='sed "s,^,_," $export_symbols >$output_objdir/$soname.expsym~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--retain-symbols-file,$output_objdir/$soname.expsym ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib' ;; linux*) if $LD --help 2>&1 | grep ': supported targets:.* elf' > /dev/null; then tmp_addflag= case $cc_basename,$host_cpu in pgcc*) # Portland Group C compiler whole_archive_flag_spec='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $echo \"$new_convenience\"` ${wl}--no-whole-archive' tmp_addflag=' $pic_flag' ;; pgf77* | pgf90* | pgf95*) # Portland Group f77 and f90 compilers whole_archive_flag_spec='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $echo \"$new_convenience\"` ${wl}--no-whole-archive' tmp_addflag=' $pic_flag -Mnomain' ;; ecc*,ia64* | icc*,ia64*) # Intel C compiler on ia64 tmp_addflag=' -i_dynamic' ;; efc*,ia64* | ifort*,ia64*) # Intel Fortran compiler on ia64 tmp_addflag=' -i_dynamic -nofor_main' ;; ifc* | ifort*) # Intel Fortran compiler tmp_addflag=' -nofor_main' ;; esac archive_cmds='$CC -shared'"$tmp_addflag"' $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' if test $supports_anon_versioning = yes; then archive_expsym_cmds='$echo "{ global:" > $output_objdir/$libname.ver~ cat $export_symbols | sed -e "s/\(.*\)/\1;/" >> $output_objdir/$libname.ver~ $echo "local: *; };" >> $output_objdir/$libname.ver~ $CC -shared'"$tmp_addflag"' $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-version-script ${wl}$output_objdir/$libname.ver -o $lib' fi else ld_shlibs=no fi ;; netbsd*) if echo __ELF__ | $CC -E - | grep __ELF__ >/dev/null; then archive_cmds='$LD -Bshareable $libobjs $deplibs $linker_flags -o $lib' wlarc= else archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib' fi ;; solaris*) if $LD -v 2>&1 | grep 'BFD 2\.8' > /dev/null; then ld_shlibs=no cat <&2 *** Warning: The releases 2.8.* of the GNU linker cannot reliably *** create shared libraries on Solaris systems. Therefore, libtool *** is disabling shared libraries support. We urge you to upgrade GNU *** binutils to release 2.9.1 or newer. Another option is to modify *** your PATH or compiler configuration so that the native linker is *** used, and then restart. EOF elif $LD --help 2>&1 | grep ': supported targets:.* elf' > /dev/null; then archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib' else ld_shlibs=no fi ;; sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX*) case `$LD -v 2>&1` in *\ [01].* | *\ 2.[0-9].* | *\ 2.1[0-5].*) ld_shlibs=no cat <<_LT_EOF 1>&2 *** Warning: Releases of the GNU linker prior to 2.16.91.0.3 can not *** reliably create shared libraries on SCO systems. Therefore, libtool *** is disabling shared libraries support. We urge you to upgrade GNU *** binutils to release 2.16.91.0.3 or newer. Another option is to modify *** your PATH or compiler configuration so that the native linker is *** used, and then restart. _LT_EOF ;; *) if $LD --help 2>&1 | grep ': supported targets:.* elf' > /dev/null; then hardcode_libdir_flag_spec='`test -z "$SCOABSPATH" && echo ${wl}-rpath,$libdir`' archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname,\${SCOABSPATH:+${install_libdir}/}$soname -o $lib' archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname,\${SCOABSPATH:+${install_libdir}/}$soname,-retain-symbols-file,$export_symbols -o $lib' else ld_shlibs=no fi ;; esac ;; sunos4*) archive_cmds='$LD -assert pure-text -Bshareable -o $lib $libobjs $deplibs $linker_flags' wlarc= hardcode_direct=yes hardcode_shlibpath_var=no ;; *) if $LD --help 2>&1 | grep ': supported targets:.* elf' > /dev/null; then archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib' else ld_shlibs=no fi ;; esac if test "$ld_shlibs" = no; then runpath_var= hardcode_libdir_flag_spec= export_dynamic_flag_spec= whole_archive_flag_spec= fi else # PORTME fill in a description of your system's linker (not GNU ld) case $host_os in aix3*) allow_undefined_flag=unsupported always_export_symbols=yes archive_expsym_cmds='$LD -o $output_objdir/$soname $libobjs $deplibs $linker_flags -bE:$export_symbols -T512 -H512 -bM:SRE~$AR $AR_FLAGS $lib $output_objdir/$soname' # Note: this linker hardcodes the directories in LIBPATH if there # are no directories specified by -L. hardcode_minus_L=yes if test "$GCC" = yes && test -z "$lt_prog_compiler_static"; then # Neither direct hardcoding nor static linking is supported with a # broken collect2. hardcode_direct=unsupported fi ;; aix4* | aix5*) if test "$host_cpu" = ia64; then # On IA64, the linker does run time linking by default, so we don't # have to do anything special. aix_use_runtimelinking=no exp_sym_flag='-Bexport' no_entry_flag="" else # If we're using GNU nm, then we don't want the "-C" option. # -C means demangle to AIX nm, but means don't demangle with GNU nm if $NM -V 2>&1 | grep 'GNU' > /dev/null; then export_symbols_cmds='$NM -Bpg $libobjs $convenience | awk '\''{ if (((\$2 == "T") || (\$2 == "D") || (\$2 == "B")) && (substr(\$3,1,1) != ".")) { print \$3 } }'\'' | sort -u > $export_symbols' else export_symbols_cmds='$NM -BCpg $libobjs $convenience | awk '\''{ if (((\$2 == "T") || (\$2 == "D") || (\$2 == "B")) && (substr(\$3,1,1) != ".")) { print \$3 } }'\'' | sort -u > $export_symbols' fi aix_use_runtimelinking=no # Test if we are trying to use run time linking or normal # AIX style linking. If -brtl is somewhere in LDFLAGS, we # need to do runtime linking. case $host_os in aix4.[23]|aix4.[23].*|aix5*) for ld_flag in $LDFLAGS; do if (test $ld_flag = "-brtl" || test $ld_flag = "-Wl,-brtl"); then aix_use_runtimelinking=yes break fi done ;; esac exp_sym_flag='-bexport' no_entry_flag='-bnoentry' fi # When large executables or shared objects are built, AIX ld can # have problems creating the table of contents. If linking a library # or program results in "error TOC overflow" add -mminimal-toc to # CXXFLAGS/CFLAGS for g++/gcc. In the cases where that is not # enough to fix the problem, add -Wl,-bbigtoc to LDFLAGS. archive_cmds='' hardcode_direct=yes hardcode_libdir_separator=':' link_all_deplibs=yes if test "$GCC" = yes; then case $host_os in aix4.[012]|aix4.[012].*) # We only want to do this on AIX 4.2 and lower, the check # below for broken collect2 doesn't work under 4.3+ collect2name=`${CC} -print-prog-name=collect2` if test -f "$collect2name" && \ strings "$collect2name" | grep resolve_lib_name >/dev/null then # We have reworked collect2 hardcode_direct=yes else # We have old collect2 hardcode_direct=unsupported # It fails to find uninstalled libraries when the uninstalled # path is not listed in the libpath. Setting hardcode_minus_L # to unsupported forces relinking hardcode_minus_L=yes hardcode_libdir_flag_spec='-L$libdir' hardcode_libdir_separator= fi ;; esac shared_flag='-shared' if test "$aix_use_runtimelinking" = yes; then shared_flag="$shared_flag "'${wl}-G' fi else # not using gcc if test "$host_cpu" = ia64; then # VisualAge C++, Version 5.5 for AIX 5L for IA-64, Beta 3 Release # chokes on -Wl,-G. The following line is correct: shared_flag='-G' else if test "$aix_use_runtimelinking" = yes; then shared_flag='${wl}-G' else shared_flag='${wl}-bM:SRE' fi fi fi # It seems that -bexpall does not export symbols beginning with # underscore (_), so it is better to generate a list of symbols to export. always_export_symbols=yes if test "$aix_use_runtimelinking" = yes; then # Warning - without using the other runtime loading flags (-brtl), # -berok will link without error, but may produce a broken library. allow_undefined_flag='-berok' # Determine the default libpath from the value encoded in an empty executable. cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ int main () { ; return 0; } _ACEOF rm -f conftest.$ac_objext conftest$ac_exeext if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5 (eval $ac_link) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } && { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; } && { ac_try='test -s conftest$ac_exeext' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; }; then aix_libpath=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e '/Import File Strings/,/^$/ { /^0/ { s/^0 *\(.*\)$/\1/; p; } }'` # Check for a 64-bit object if we didn't find anything. if test -z "$aix_libpath"; then aix_libpath=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e '/Import File Strings/,/^$/ { /^0/ { s/^0 *\(.*\)$/\1/; p; } }'`; fi else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 fi rm -f conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext if test -z "$aix_libpath"; then aix_libpath="/usr/lib:/lib"; fi hardcode_libdir_flag_spec='${wl}-blibpath:$libdir:'"$aix_libpath" archive_expsym_cmds="\$CC"' -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags `if test "x${allow_undefined_flag}" != "x"; then echo "${wl}${allow_undefined_flag}"; else :; fi` '"\${wl}$exp_sym_flag:\$export_symbols $shared_flag" else if test "$host_cpu" = ia64; then hardcode_libdir_flag_spec='${wl}-R $libdir:/usr/lib:/lib' allow_undefined_flag="-z nodefs" archive_expsym_cmds="\$CC $shared_flag"' -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags ${wl}${allow_undefined_flag} '"\${wl}$exp_sym_flag:\$export_symbols" else # Determine the default libpath from the value encoded in an empty executable. cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ int main () { ; return 0; } _ACEOF rm -f conftest.$ac_objext conftest$ac_exeext if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5 (eval $ac_link) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } && { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; } && { ac_try='test -s conftest$ac_exeext' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; }; then aix_libpath=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e '/Import File Strings/,/^$/ { /^0/ { s/^0 *\(.*\)$/\1/; p; } }'` # Check for a 64-bit object if we didn't find anything. if test -z "$aix_libpath"; then aix_libpath=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e '/Import File Strings/,/^$/ { /^0/ { s/^0 *\(.*\)$/\1/; p; } }'`; fi else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 fi rm -f conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext if test -z "$aix_libpath"; then aix_libpath="/usr/lib:/lib"; fi hardcode_libdir_flag_spec='${wl}-blibpath:$libdir:'"$aix_libpath" # Warning - without using the other run time loading flags, # -berok will link without error, but may produce a broken library. no_undefined_flag=' ${wl}-bernotok' allow_undefined_flag=' ${wl}-berok' # Exported symbols can be pulled into shared objects from archives whole_archive_flag_spec='$convenience' archive_cmds_need_lc=yes # This is similar to how AIX traditionally builds its shared libraries. archive_expsym_cmds="\$CC $shared_flag"' -o $output_objdir/$soname $libobjs $deplibs ${wl}-bnoentry $compiler_flags ${wl}-bE:$export_symbols${allow_undefined_flag}~$AR $AR_FLAGS $output_objdir/$libname$release.a $output_objdir/$soname' fi fi ;; amigaos*) archive_cmds='$rm $output_objdir/a2ixlibrary.data~$echo "#define NAME $libname" > $output_objdir/a2ixlibrary.data~$echo "#define LIBRARY_ID 1" >> $output_objdir/a2ixlibrary.data~$echo "#define VERSION $major" >> $output_objdir/a2ixlibrary.data~$echo "#define REVISION $revision" >> $output_objdir/a2ixlibrary.data~$AR $AR_FLAGS $lib $libobjs~$RANLIB $lib~(cd $output_objdir && a2ixlibrary -32)' hardcode_libdir_flag_spec='-L$libdir' hardcode_minus_L=yes # see comment about different semantics on the GNU ld section ld_shlibs=no ;; bsdi[45]*) export_dynamic_flag_spec=-rdynamic ;; cygwin* | mingw* | pw32*) # When not using gcc, we currently assume that we are using # Microsoft Visual C++. # hardcode_libdir_flag_spec is actually meaningless, as there is # no search path for DLLs. hardcode_libdir_flag_spec=' ' allow_undefined_flag=unsupported # Tell ltmain to make .lib files, not .a files. libext=lib # Tell ltmain to make .dll files, not .so files. shrext_cmds=".dll" # FIXME: Setting linknames here is a bad hack. archive_cmds='$CC -o $lib $libobjs $compiler_flags `echo "$deplibs" | $SED -e '\''s/ -lc$//'\''` -link -dll~linknames=' # The linker will automatically build a .lib file if we build a DLL. old_archive_From_new_cmds='true' # FIXME: Should let the user specify the lib program. old_archive_cmds='lib /OUT:$oldlib$oldobjs$old_deplibs' fix_srcfile_path='`cygpath -w "$srcfile"`' enable_shared_with_static_runtimes=yes ;; darwin* | rhapsody*) case $host_os in rhapsody* | darwin1.[012]) allow_undefined_flag='${wl}-undefined ${wl}suppress' ;; *) # Darwin 1.3 on if test -z ${MACOSX_DEPLOYMENT_TARGET} ; then allow_undefined_flag='${wl}-flat_namespace ${wl}-undefined ${wl}suppress' else case ${MACOSX_DEPLOYMENT_TARGET} in 10.[012]) allow_undefined_flag='${wl}-flat_namespace ${wl}-undefined ${wl}suppress' ;; 10.*) allow_undefined_flag='${wl}-undefined ${wl}dynamic_lookup' ;; esac fi ;; esac archive_cmds_need_lc=no hardcode_direct=no hardcode_automatic=yes hardcode_shlibpath_var=unsupported whole_archive_flag_spec='' link_all_deplibs=yes if test "$GCC" = yes ; then output_verbose_link_cmd='echo' archive_cmds='$CC -dynamiclib $allow_undefined_flag -o $lib $libobjs $deplibs $compiler_flags -install_name $rpath/$soname $verstring' module_cmds='$CC $allow_undefined_flag -o $lib -bundle $libobjs $deplibs$compiler_flags' # Don't fix this by using the ld -exported_symbols_list flag, it doesn't exist in older darwin lds archive_expsym_cmds='sed -e "s,#.*,," -e "s,^[ ]*,," -e "s,^\(..*\),_&," < $export_symbols > $output_objdir/${libname}-symbols.expsym~$CC -dynamiclib $allow_undefined_flag -o $lib $libobjs $deplibs $compiler_flags -install_name $rpath/$soname $verstring~nmedit -s $output_objdir/${libname}-symbols.expsym ${lib}' module_expsym_cmds='sed -e "s,#.*,," -e "s,^[ ]*,," -e "s,^\(..*\),_&," < $export_symbols > $output_objdir/${libname}-symbols.expsym~$CC $allow_undefined_flag -o $lib -bundle $libobjs $deplibs$compiler_flags~nmedit -s $output_objdir/${libname}-symbols.expsym ${lib}' else case $cc_basename in xlc*) output_verbose_link_cmd='echo' archive_cmds='$CC -qmkshrobj $allow_undefined_flag -o $lib $libobjs $deplibs $compiler_flags ${wl}-install_name ${wl}`echo $rpath/$soname` $verstring' module_cmds='$CC $allow_undefined_flag -o $lib -bundle $libobjs $deplibs$compiler_flags' # Don't fix this by using the ld -exported_symbols_list flag, it doesn't exist in older darwin lds archive_expsym_cmds='sed -e "s,#.*,," -e "s,^[ ]*,," -e "s,^\(..*\),_&," < $export_symbols > $output_objdir/${libname}-symbols.expsym~$CC -qmkshrobj $allow_undefined_flag -o $lib $libobjs $deplibs $compiler_flags ${wl}-install_name ${wl}$rpath/$soname $verstring~nmedit -s $output_objdir/${libname}-symbols.expsym ${lib}' module_expsym_cmds='sed -e "s,#.*,," -e "s,^[ ]*,," -e "s,^\(..*\),_&," < $export_symbols > $output_objdir/${libname}-symbols.expsym~$CC $allow_undefined_flag -o $lib -bundle $libobjs $deplibs$compiler_flags~nmedit -s $output_objdir/${libname}-symbols.expsym ${lib}' ;; *) ld_shlibs=no ;; esac fi ;; dgux*) archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' hardcode_libdir_flag_spec='-L$libdir' hardcode_shlibpath_var=no ;; freebsd1*) ld_shlibs=no ;; # FreeBSD 2.2.[012] allows us to include c++rt0.o to get C++ constructor # support. Future versions do this automatically, but an explicit c++rt0.o # does not break anything, and helps significantly (at the cost of a little # extra space). freebsd2.2*) archive_cmds='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags /usr/lib/c++rt0.o' hardcode_libdir_flag_spec='-R$libdir' hardcode_direct=yes hardcode_shlibpath_var=no ;; # Unfortunately, older versions of FreeBSD 2 do not have this feature. freebsd2*) archive_cmds='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' hardcode_direct=yes hardcode_minus_L=yes hardcode_shlibpath_var=no ;; # FreeBSD 3 and greater uses gcc -shared to do shared libraries. freebsd* | kfreebsd*-gnu | dragonfly*) archive_cmds='$CC -shared -o $lib $libobjs $deplibs $compiler_flags' hardcode_libdir_flag_spec='-R$libdir' hardcode_direct=yes hardcode_shlibpath_var=no ;; hpux9*) if test "$GCC" = yes; then archive_cmds='$rm $output_objdir/$soname~$CC -shared -fPIC ${wl}+b ${wl}$install_libdir -o $output_objdir/$soname $libobjs $deplibs $compiler_flags~test $output_objdir/$soname = $lib || mv $output_objdir/$soname $lib' else archive_cmds='$rm $output_objdir/$soname~$LD -b +b $install_libdir -o $output_objdir/$soname $libobjs $deplibs $linker_flags~test $output_objdir/$soname = $lib || mv $output_objdir/$soname $lib' fi hardcode_libdir_flag_spec='${wl}+b ${wl}$libdir' hardcode_libdir_separator=: hardcode_direct=yes # hardcode_minus_L: Not really in the search PATH, # but as the default location of the library. hardcode_minus_L=yes export_dynamic_flag_spec='${wl}-E' ;; hpux10*) if test "$GCC" = yes -a "$with_gnu_ld" = no; then archive_cmds='$CC -shared -fPIC ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags' else archive_cmds='$LD -b +h $soname +b $install_libdir -o $lib $libobjs $deplibs $linker_flags' fi if test "$with_gnu_ld" = no; then hardcode_libdir_flag_spec='${wl}+b ${wl}$libdir' hardcode_libdir_separator=: hardcode_direct=yes export_dynamic_flag_spec='${wl}-E' # hardcode_minus_L: Not really in the search PATH, # but as the default location of the library. hardcode_minus_L=yes fi ;; hpux11*) if test "$GCC" = yes -a "$with_gnu_ld" = no; then case $host_cpu in hppa*64*) archive_cmds='$CC -shared ${wl}+h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags' ;; ia64*) archive_cmds='$CC -shared ${wl}+h ${wl}$soname ${wl}+nodefaultrpath -o $lib $libobjs $deplibs $compiler_flags' ;; *) archive_cmds='$CC -shared -fPIC ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags' ;; esac else case $host_cpu in hppa*64*) archive_cmds='$CC -b ${wl}+h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags' ;; ia64*) archive_cmds='$CC -b ${wl}+h ${wl}$soname ${wl}+nodefaultrpath -o $lib $libobjs $deplibs $compiler_flags' ;; *) archive_cmds='$CC -b ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags' ;; esac fi if test "$with_gnu_ld" = no; then hardcode_libdir_flag_spec='${wl}+b ${wl}$libdir' hardcode_libdir_separator=: case $host_cpu in hppa*64*|ia64*) hardcode_libdir_flag_spec_ld='+b $libdir' hardcode_direct=no hardcode_shlibpath_var=no ;; *) hardcode_direct=yes export_dynamic_flag_spec='${wl}-E' # hardcode_minus_L: Not really in the search PATH, # but as the default location of the library. hardcode_minus_L=yes ;; esac fi ;; irix5* | irix6* | nonstopux*) if test "$GCC" = yes; then archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && echo ${wl}-set_version ${wl}$verstring` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib' else archive_cmds='$LD -shared $libobjs $deplibs $linker_flags -soname $soname `test -n "$verstring" && echo -set_version $verstring` -update_registry ${output_objdir}/so_locations -o $lib' hardcode_libdir_flag_spec_ld='-rpath $libdir' fi hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' hardcode_libdir_separator=: link_all_deplibs=yes ;; netbsd*) if echo __ELF__ | $CC -E - | grep __ELF__ >/dev/null; then archive_cmds='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' # a.out else archive_cmds='$LD -shared -o $lib $libobjs $deplibs $linker_flags' # ELF fi hardcode_libdir_flag_spec='-R$libdir' hardcode_direct=yes hardcode_shlibpath_var=no ;; newsos6) archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' hardcode_direct=yes hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' hardcode_libdir_separator=: hardcode_shlibpath_var=no ;; openbsd*) hardcode_direct=yes hardcode_shlibpath_var=no if test -z "`echo __ELF__ | $CC -E - | grep __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then archive_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags' archive_expsym_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags ${wl}-retain-symbols-file,$export_symbols' hardcode_libdir_flag_spec='${wl}-rpath,$libdir' export_dynamic_flag_spec='${wl}-E' else case $host_os in openbsd[01].* | openbsd2.[0-7] | openbsd2.[0-7].*) archive_cmds='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' hardcode_libdir_flag_spec='-R$libdir' ;; *) archive_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags' hardcode_libdir_flag_spec='${wl}-rpath,$libdir' ;; esac fi ;; os2*) hardcode_libdir_flag_spec='-L$libdir' hardcode_minus_L=yes allow_undefined_flag=unsupported archive_cmds='$echo "LIBRARY $libname INITINSTANCE" > $output_objdir/$libname.def~$echo "DESCRIPTION \"$libname\"" >> $output_objdir/$libname.def~$echo DATA >> $output_objdir/$libname.def~$echo " SINGLE NONSHARED" >> $output_objdir/$libname.def~$echo EXPORTS >> $output_objdir/$libname.def~emxexp $libobjs >> $output_objdir/$libname.def~$CC -Zdll -Zcrtdll -o $lib $libobjs $deplibs $compiler_flags $output_objdir/$libname.def' old_archive_From_new_cmds='emximp -o $output_objdir/$libname.a $output_objdir/$libname.def' ;; osf3*) if test "$GCC" = yes; then allow_undefined_flag=' ${wl}-expect_unresolved ${wl}\*' archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && echo ${wl}-set_version ${wl}$verstring` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib' else allow_undefined_flag=' -expect_unresolved \*' archive_cmds='$LD -shared${allow_undefined_flag} $libobjs $deplibs $linker_flags -soname $soname `test -n "$verstring" && echo -set_version $verstring` -update_registry ${output_objdir}/so_locations -o $lib' fi hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' hardcode_libdir_separator=: ;; osf4* | osf5*) # as osf3* with the addition of -msym flag if test "$GCC" = yes; then allow_undefined_flag=' ${wl}-expect_unresolved ${wl}\*' archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags ${wl}-msym ${wl}-soname ${wl}$soname `test -n "$verstring" && echo ${wl}-set_version ${wl}$verstring` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib' hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' else allow_undefined_flag=' -expect_unresolved \*' archive_cmds='$LD -shared${allow_undefined_flag} $libobjs $deplibs $linker_flags -msym -soname $soname `test -n "$verstring" && echo -set_version $verstring` -update_registry ${output_objdir}/so_locations -o $lib' archive_expsym_cmds='for i in `cat $export_symbols`; do printf "%s %s\\n" -exported_symbol "\$i" >> $lib.exp; done; echo "-hidden">> $lib.exp~ $LD -shared${allow_undefined_flag} -input $lib.exp $linker_flags $libobjs $deplibs -soname $soname `test -n "$verstring" && echo -set_version $verstring` -update_registry ${output_objdir}/so_locations -o $lib~$rm $lib.exp' # Both c and cxx compiler support -rpath directly hardcode_libdir_flag_spec='-rpath $libdir' fi hardcode_libdir_separator=: ;; solaris*) no_undefined_flag=' -z text' if test "$GCC" = yes; then wlarc='${wl}' archive_cmds='$CC -shared ${wl}-h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags' archive_expsym_cmds='$echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~$echo "local: *; };" >> $lib.exp~ $CC -shared ${wl}-M ${wl}$lib.exp ${wl}-h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags~$rm $lib.exp' else wlarc='' archive_cmds='$LD -G${allow_undefined_flag} -h $soname -o $lib $libobjs $deplibs $linker_flags' archive_expsym_cmds='$echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~$echo "local: *; };" >> $lib.exp~ $LD -G${allow_undefined_flag} -M $lib.exp -h $soname -o $lib $libobjs $deplibs $linker_flags~$rm $lib.exp' fi hardcode_libdir_flag_spec='-R$libdir' hardcode_shlibpath_var=no case $host_os in solaris2.[0-5] | solaris2.[0-5].*) ;; *) # The compiler driver will combine linker options so we # cannot just pass the convience library names through # without $wl, iff we do not link with $LD. # Luckily, gcc supports the same syntax we need for Sun Studio. # Supported since Solaris 2.6 (maybe 2.5.1?) case $wlarc in '') whole_archive_flag_spec='-z allextract$convenience -z defaultextract' ;; *) whole_archive_flag_spec='${wl}-z ${wl}allextract`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $echo \"$new_convenience\"` ${wl}-z ${wl}defaultextract' ;; esac ;; esac link_all_deplibs=yes ;; sunos4*) if test "x$host_vendor" = xsequent; then # Use $CC to link under sequent, because it throws in some extra .o # files that make .init and .fini sections work. archive_cmds='$CC -G ${wl}-h $soname -o $lib $libobjs $deplibs $compiler_flags' else archive_cmds='$LD -assert pure-text -Bstatic -o $lib $libobjs $deplibs $linker_flags' fi hardcode_libdir_flag_spec='-L$libdir' hardcode_direct=yes hardcode_minus_L=yes hardcode_shlibpath_var=no ;; sysv4) case $host_vendor in sni) archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' hardcode_direct=yes # is this really true??? ;; siemens) ## LD is ld it makes a PLAMLIB ## CC just makes a GrossModule. archive_cmds='$LD -G -o $lib $libobjs $deplibs $linker_flags' reload_cmds='$CC -r -o $output$reload_objs' hardcode_direct=no ;; motorola) archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' hardcode_direct=no #Motorola manual says yes, but my tests say they lie ;; esac runpath_var='LD_RUN_PATH' hardcode_shlibpath_var=no ;; sysv4.3*) archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' hardcode_shlibpath_var=no export_dynamic_flag_spec='-Bexport' ;; sysv4*MP*) if test -d /usr/nec; then archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' hardcode_shlibpath_var=no runpath_var=LD_RUN_PATH hardcode_runpath_var=yes ld_shlibs=yes fi ;; sysv4*uw2* | sysv5OpenUNIX* | sysv5UnixWare7.[01].[10]* | unixware7*) no_undefined_flag='${wl}-z,text' archive_cmds_need_lc=no hardcode_shlibpath_var=no runpath_var='LD_RUN_PATH' if test "$GCC" = yes; then archive_cmds='$CC -shared ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags' archive_expsym_cmds='$CC -shared ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags' else archive_cmds='$CC -G ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags' archive_expsym_cmds='$CC -G ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags' fi ;; sysv5* | sco3.2v5* | sco5v6*) # Note: We can NOT use -z defs as we might desire, because we do not # link with -lc, and that would cause any symbols used from libc to # always be unresolved, which means just about no library would # ever link correctly. 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The import file would start with # the line `#! .'. This would cause the generated library to # depend on `.', always an invalid library. This was fixed in # development snapshots of GCC prior to 3.0. case $host_os in aix4 | aix4.[01] | aix4.[01].*) if { echo '#if __GNUC__ > 2 || (__GNUC__ == 2 && __GNUC_MINOR__ >= 97)' echo ' yes ' echo '#endif'; } | ${CC} -E - | grep yes > /dev/null; then : else can_build_shared=no fi ;; esac # AIX (on Power*) has no versioning support, so currently we can not hardcode correct # soname into executable. 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irix5* | irix6* | nonstopux*) case $host_os in nonstopux*) version_type=nonstopux ;; *) if test "$lt_cv_prog_gnu_ld" = yes; then version_type=linux else version_type=irix fi ;; esac need_lib_prefix=no need_version=no soname_spec='${libname}${release}${shared_ext}$major' library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${release}${shared_ext} $libname${shared_ext}' case $host_os in irix5* | nonstopux*) libsuff= shlibsuff= ;; *) case $LD in # libtool.m4 will add one of these switches to LD *-32|*"-32 "|*-melf32bsmip|*"-melf32bsmip ") libsuff= shlibsuff= libmagic=32-bit;; *-n32|*"-n32 "|*-melf32bmipn32|*"-melf32bmipn32 ") libsuff=32 shlibsuff=N32 libmagic=N32;; *-64|*"-64 "|*-melf64bmip|*"-melf64bmip ") libsuff=64 shlibsuff=64 libmagic=64-bit;; *) libsuff= shlibsuff= libmagic=never-match;; esac ;; esac shlibpath_var=LD_LIBRARY${shlibsuff}_PATH shlibpath_overrides_runpath=no sys_lib_search_path_spec="/usr/lib${libsuff} /lib${libsuff} /usr/local/lib${libsuff}" sys_lib_dlsearch_path_spec="/usr/lib${libsuff} /lib${libsuff}" hardcode_into_libs=yes ;; 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esac fi rm -rf conftest* ;; esac # Append ld.so.conf contents to the search path if test -f /etc/ld.so.conf; then lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra" fi # We used to test for /lib/ld.so.1 and disable shared libraries on # powerpc, because MkLinux only supported shared libraries with the # GNU dynamic linker. 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esac fi if test "x$enable_dlopen" != xyes; then enable_dlopen=unknown enable_dlopen_self=unknown enable_dlopen_self_static=unknown else lt_cv_dlopen=no lt_cv_dlopen_libs= case $host_os in beos*) lt_cv_dlopen="load_add_on" lt_cv_dlopen_libs= lt_cv_dlopen_self=yes ;; mingw* | pw32*) lt_cv_dlopen="LoadLibrary" lt_cv_dlopen_libs= ;; cygwin*) lt_cv_dlopen="dlopen" lt_cv_dlopen_libs= ;; darwin*) # if libdl is installed we need to link against it echo "$as_me:$LINENO: checking for dlopen in -ldl" >&5 echo $ECHO_N "checking for dlopen in -ldl... $ECHO_C" >&6 if test "${ac_cv_lib_dl_dlopen+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else ac_check_lib_save_LIBS=$LIBS LIBS="-ldl $LIBS" cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen (); int main () { dlopen (); ; return 0; } _ACEOF rm -f conftest.$ac_objext conftest$ac_exeext if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5 (eval $ac_link) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } && { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; } && { ac_try='test -s conftest$ac_exeext' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; }; then ac_cv_lib_dl_dlopen=yes else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 ac_cv_lib_dl_dlopen=no fi rm -f conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext LIBS=$ac_check_lib_save_LIBS fi echo "$as_me:$LINENO: result: $ac_cv_lib_dl_dlopen" >&5 echo "${ECHO_T}$ac_cv_lib_dl_dlopen" >&6 if test $ac_cv_lib_dl_dlopen = yes; then lt_cv_dlopen="dlopen" lt_cv_dlopen_libs="-ldl" else lt_cv_dlopen="dyld" lt_cv_dlopen_libs= lt_cv_dlopen_self=yes fi ;; *) echo "$as_me:$LINENO: checking for shl_load" >&5 echo $ECHO_N "checking for shl_load... $ECHO_C" >&6 if test "${ac_cv_func_shl_load+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ /* Define shl_load to an innocuous variant, in case declares shl_load. For example, HP-UX 11i declares gettimeofday. */ #define shl_load innocuous_shl_load /* System header to define __stub macros and hopefully few prototypes, which can conflict with char shl_load (); below. Prefer to if __STDC__ is defined, since exists even on freestanding compilers. */ #ifdef __STDC__ # include #else # include #endif #undef shl_load /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char shl_load (); /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_shl_load) || defined (__stub___shl_load) choke me #else char (*f) () = shl_load; #endif #ifdef __cplusplus } #endif int main () { return f != shl_load; ; return 0; } _ACEOF rm -f conftest.$ac_objext conftest$ac_exeext if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5 (eval $ac_link) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } && { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; } && { ac_try='test -s conftest$ac_exeext' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; }; then ac_cv_func_shl_load=yes else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 ac_cv_func_shl_load=no fi rm -f conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext fi echo "$as_me:$LINENO: result: $ac_cv_func_shl_load" >&5 echo "${ECHO_T}$ac_cv_func_shl_load" >&6 if test $ac_cv_func_shl_load = yes; then lt_cv_dlopen="shl_load" else echo "$as_me:$LINENO: checking for shl_load in -ldld" >&5 echo $ECHO_N "checking for shl_load in -ldld... $ECHO_C" >&6 if test "${ac_cv_lib_dld_shl_load+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else ac_check_lib_save_LIBS=$LIBS LIBS="-ldld $LIBS" cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char shl_load (); int main () { shl_load (); ; return 0; } _ACEOF rm -f conftest.$ac_objext conftest$ac_exeext if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5 (eval $ac_link) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } && { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; } && { ac_try='test -s conftest$ac_exeext' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; }; then ac_cv_lib_dld_shl_load=yes else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 ac_cv_lib_dld_shl_load=no fi rm -f conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext LIBS=$ac_check_lib_save_LIBS fi echo "$as_me:$LINENO: result: $ac_cv_lib_dld_shl_load" >&5 echo "${ECHO_T}$ac_cv_lib_dld_shl_load" >&6 if test $ac_cv_lib_dld_shl_load = yes; then lt_cv_dlopen="shl_load" lt_cv_dlopen_libs="-dld" else echo "$as_me:$LINENO: checking for dlopen" >&5 echo $ECHO_N "checking for dlopen... $ECHO_C" >&6 if test "${ac_cv_func_dlopen+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ /* Define dlopen to an innocuous variant, in case declares dlopen. For example, HP-UX 11i declares gettimeofday. */ #define dlopen innocuous_dlopen /* System header to define __stub macros and hopefully few prototypes, which can conflict with char dlopen (); below. Prefer to if __STDC__ is defined, since exists even on freestanding compilers. */ #ifdef __STDC__ # include #else # include #endif #undef dlopen /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen (); /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_dlopen) || defined (__stub___dlopen) choke me #else char (*f) () = dlopen; #endif #ifdef __cplusplus } #endif int main () { return f != dlopen; ; return 0; } _ACEOF rm -f conftest.$ac_objext conftest$ac_exeext if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5 (eval $ac_link) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } && { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; } && { ac_try='test -s conftest$ac_exeext' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; }; then ac_cv_func_dlopen=yes else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 ac_cv_func_dlopen=no fi rm -f conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext fi echo "$as_me:$LINENO: result: $ac_cv_func_dlopen" >&5 echo "${ECHO_T}$ac_cv_func_dlopen" >&6 if test $ac_cv_func_dlopen = yes; then lt_cv_dlopen="dlopen" else echo "$as_me:$LINENO: checking for dlopen in -ldl" >&5 echo $ECHO_N "checking for dlopen in -ldl... $ECHO_C" >&6 if test "${ac_cv_lib_dl_dlopen+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else ac_check_lib_save_LIBS=$LIBS LIBS="-ldl $LIBS" cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen (); int main () { dlopen (); ; return 0; } _ACEOF rm -f conftest.$ac_objext conftest$ac_exeext if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5 (eval $ac_link) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } && { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; } && { ac_try='test -s conftest$ac_exeext' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; }; then ac_cv_lib_dl_dlopen=yes else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 ac_cv_lib_dl_dlopen=no fi rm -f conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext LIBS=$ac_check_lib_save_LIBS fi echo "$as_me:$LINENO: result: $ac_cv_lib_dl_dlopen" >&5 echo "${ECHO_T}$ac_cv_lib_dl_dlopen" >&6 if test $ac_cv_lib_dl_dlopen = yes; then lt_cv_dlopen="dlopen" lt_cv_dlopen_libs="-ldl" else echo "$as_me:$LINENO: checking for dlopen in -lsvld" >&5 echo $ECHO_N "checking for dlopen in -lsvld... $ECHO_C" >&6 if test "${ac_cv_lib_svld_dlopen+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else ac_check_lib_save_LIBS=$LIBS LIBS="-lsvld $LIBS" cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen (); int main () { dlopen (); ; return 0; } _ACEOF rm -f conftest.$ac_objext conftest$ac_exeext if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5 (eval $ac_link) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } && { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; } && { ac_try='test -s conftest$ac_exeext' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; }; then ac_cv_lib_svld_dlopen=yes else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 ac_cv_lib_svld_dlopen=no fi rm -f conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext LIBS=$ac_check_lib_save_LIBS fi echo "$as_me:$LINENO: result: $ac_cv_lib_svld_dlopen" >&5 echo "${ECHO_T}$ac_cv_lib_svld_dlopen" >&6 if test $ac_cv_lib_svld_dlopen = yes; then lt_cv_dlopen="dlopen" lt_cv_dlopen_libs="-lsvld" else echo "$as_me:$LINENO: checking for dld_link in -ldld" >&5 echo $ECHO_N "checking for dld_link in -ldld... $ECHO_C" >&6 if test "${ac_cv_lib_dld_dld_link+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else ac_check_lib_save_LIBS=$LIBS LIBS="-ldld $LIBS" cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dld_link (); int main () { dld_link (); ; return 0; } _ACEOF rm -f conftest.$ac_objext conftest$ac_exeext if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5 (eval $ac_link) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } && { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; } && { ac_try='test -s conftest$ac_exeext' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; }; then ac_cv_lib_dld_dld_link=yes else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 ac_cv_lib_dld_dld_link=no fi rm -f conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext LIBS=$ac_check_lib_save_LIBS fi echo "$as_me:$LINENO: result: $ac_cv_lib_dld_dld_link" >&5 echo "${ECHO_T}$ac_cv_lib_dld_dld_link" >&6 if test $ac_cv_lib_dld_dld_link = yes; then lt_cv_dlopen="dld_link" lt_cv_dlopen_libs="-dld" fi fi fi fi fi fi ;; esac if test "x$lt_cv_dlopen" != xno; then enable_dlopen=yes else enable_dlopen=no fi case $lt_cv_dlopen in dlopen) save_CPPFLAGS="$CPPFLAGS" test "x$ac_cv_header_dlfcn_h" = xyes && CPPFLAGS="$CPPFLAGS -DHAVE_DLFCN_H" save_LDFLAGS="$LDFLAGS" wl=$lt_prog_compiler_wl eval LDFLAGS=\"\$LDFLAGS $export_dynamic_flag_spec\" save_LIBS="$LIBS" LIBS="$lt_cv_dlopen_libs $LIBS" echo "$as_me:$LINENO: checking whether a program can dlopen itself" >&5 echo $ECHO_N "checking whether a program can dlopen itself... $ECHO_C" >&6 if test "${lt_cv_dlopen_self+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else if test "$cross_compiling" = yes; then : lt_cv_dlopen_self=cross else lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2 lt_status=$lt_dlunknown cat > conftest.$ac_ext < #endif #include #ifdef RTLD_GLOBAL # define LT_DLGLOBAL RTLD_GLOBAL #else # ifdef DL_GLOBAL # define LT_DLGLOBAL DL_GLOBAL # else # define LT_DLGLOBAL 0 # endif #endif /* We may have to define LT_DLLAZY_OR_NOW in the command line if we find out it does not work in some platform. */ #ifndef LT_DLLAZY_OR_NOW # ifdef RTLD_LAZY # define LT_DLLAZY_OR_NOW RTLD_LAZY # else # ifdef DL_LAZY # define LT_DLLAZY_OR_NOW DL_LAZY # else # ifdef RTLD_NOW # define LT_DLLAZY_OR_NOW RTLD_NOW # else # ifdef DL_NOW # define LT_DLLAZY_OR_NOW DL_NOW # else # define LT_DLLAZY_OR_NOW 0 # endif # endif # endif # endif #endif #ifdef __cplusplus extern "C" void exit (int); #endif void fnord() { int i=42;} int main () { void *self = dlopen (0, LT_DLGLOBAL|LT_DLLAZY_OR_NOW); int status = $lt_dlunknown; if (self) { if (dlsym (self,"fnord")) status = $lt_dlno_uscore; else if (dlsym( self,"_fnord")) status = $lt_dlneed_uscore; /* dlclose (self); */ } else puts (dlerror ()); exit (status); } EOF if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5 (eval $ac_link) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } && test -s conftest${ac_exeext} 2>/dev/null; then (./conftest; exit; ) >&5 2>/dev/null lt_status=$? case x$lt_status in x$lt_dlno_uscore) lt_cv_dlopen_self=yes ;; x$lt_dlneed_uscore) lt_cv_dlopen_self=yes ;; x$lt_dlunknown|x*) lt_cv_dlopen_self=no ;; esac else : # compilation failed lt_cv_dlopen_self=no fi fi rm -fr conftest* fi echo "$as_me:$LINENO: result: $lt_cv_dlopen_self" >&5 echo "${ECHO_T}$lt_cv_dlopen_self" >&6 if test "x$lt_cv_dlopen_self" = xyes; then wl=$lt_prog_compiler_wl eval LDFLAGS=\"\$LDFLAGS $lt_prog_compiler_static\" echo "$as_me:$LINENO: checking whether a statically linked program can dlopen itself" >&5 echo $ECHO_N "checking whether a statically linked program can dlopen itself... $ECHO_C" >&6 if test "${lt_cv_dlopen_self_static+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else if test "$cross_compiling" = yes; then : lt_cv_dlopen_self_static=cross else lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2 lt_status=$lt_dlunknown cat > conftest.$ac_ext < #endif #include #ifdef RTLD_GLOBAL # define LT_DLGLOBAL RTLD_GLOBAL #else # ifdef DL_GLOBAL # define LT_DLGLOBAL DL_GLOBAL # else # define LT_DLGLOBAL 0 # endif #endif /* We may have to define LT_DLLAZY_OR_NOW in the command line if we find out it does not work in some platform. */ #ifndef LT_DLLAZY_OR_NOW # ifdef RTLD_LAZY # define LT_DLLAZY_OR_NOW RTLD_LAZY # else # ifdef DL_LAZY # define LT_DLLAZY_OR_NOW DL_LAZY # else # ifdef RTLD_NOW # define LT_DLLAZY_OR_NOW RTLD_NOW # else # ifdef DL_NOW # define LT_DLLAZY_OR_NOW DL_NOW # else # define LT_DLLAZY_OR_NOW 0 # endif # endif # endif # endif #endif #ifdef __cplusplus extern "C" void exit (int); #endif void fnord() { int i=42;} int main () { void *self = dlopen (0, LT_DLGLOBAL|LT_DLLAZY_OR_NOW); int status = $lt_dlunknown; if (self) { if (dlsym (self,"fnord")) status = $lt_dlno_uscore; else if (dlsym( self,"_fnord")) status = $lt_dlneed_uscore; /* dlclose (self); */ } else puts (dlerror ()); exit (status); } EOF if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5 (eval $ac_link) 2>&5 ac_status=$? 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If you *** really care for shared libraries, you may want to modify your PATH *** so that a non-GNU linker is found, and then restart. EOF fi ;; amigaos*) archive_cmds_F77='$rm $output_objdir/a2ixlibrary.data~$echo "#define NAME $libname" > $output_objdir/a2ixlibrary.data~$echo "#define LIBRARY_ID 1" >> $output_objdir/a2ixlibrary.data~$echo "#define VERSION $major" >> $output_objdir/a2ixlibrary.data~$echo "#define REVISION $revision" >> $output_objdir/a2ixlibrary.data~$AR $AR_FLAGS $lib $libobjs~$RANLIB $lib~(cd $output_objdir && a2ixlibrary -32)' hardcode_libdir_flag_spec_F77='-L$libdir' hardcode_minus_L_F77=yes # Samuel A. Falvo II reports # that the semantics of dynamic libraries on AmigaOS, at least up # to version 4, is to share data among multiple programs linked # with the same dynamic library. Since this doesn't match the # behavior of shared libraries on other platforms, we can't use # them. ld_shlibs_F77=no ;; beos*) if $LD --help 2>&1 | grep ': supported targets:.* elf' > /dev/null; then allow_undefined_flag_F77=unsupported # Joseph Beckenbach says some releases of gcc # support --undefined. This deserves some investigation. FIXME archive_cmds_F77='$CC -nostart $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' else ld_shlibs_F77=no fi ;; cygwin* | mingw* | pw32*) # _LT_AC_TAGVAR(hardcode_libdir_flag_spec, F77) is actually meaningless, # as there is no search path for DLLs. hardcode_libdir_flag_spec_F77='-L$libdir' allow_undefined_flag_F77=unsupported always_export_symbols_F77=no enable_shared_with_static_runtimes_F77=yes export_symbols_cmds_F77='$NM $libobjs $convenience | $global_symbol_pipe | $SED -e '\''/^[BCDGRS] /s/.* \([^ ]*\)/\1 DATA/'\'' | $SED -e '\''/^[AITW] /s/.* //'\'' | sort | uniq > $export_symbols' if $LD --help 2>&1 | grep 'auto-import' > /dev/null; then archive_cmds_F77='$CC -shared $libobjs $deplibs $compiler_flags -o $output_objdir/$soname ${wl}--enable-auto-image-base -Xlinker --out-implib -Xlinker $lib' # If the export-symbols file already is a .def file (1st line # is EXPORTS), use it as is; otherwise, prepend... archive_expsym_cmds_F77='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then cp $export_symbols $output_objdir/$soname.def; else echo EXPORTS > $output_objdir/$soname.def; cat $export_symbols >> $output_objdir/$soname.def; fi~ $CC -shared $output_objdir/$soname.def $libobjs $deplibs $compiler_flags -o $output_objdir/$soname ${wl}--enable-auto-image-base -Xlinker --out-implib -Xlinker $lib' else ld_shlibs_F77=no fi ;; interix3*) hardcode_direct_F77=no hardcode_shlibpath_var_F77=no hardcode_libdir_flag_spec_F77='${wl}-rpath,$libdir' export_dynamic_flag_spec_F77='${wl}-E' # Hack: On Interix 3.x, we cannot compile PIC because of a broken gcc. # Instead, shared libraries are loaded at an image base (0x10000000 by # default) and relocated if they conflict, which is a slow very memory # consuming and fragmenting process. To avoid this, we pick a random, # 256 KiB-aligned image base between 0x50000000 and 0x6FFC0000 at link # time. Moving up from 0x10000000 also allows more sbrk(2) space. archive_cmds_F77='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib' archive_expsym_cmds_F77='sed "s,^,_," $export_symbols >$output_objdir/$soname.expsym~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--retain-symbols-file,$output_objdir/$soname.expsym ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib' ;; linux*) if $LD --help 2>&1 | grep ': supported targets:.* elf' > /dev/null; then tmp_addflag= case $cc_basename,$host_cpu in pgcc*) # Portland Group C compiler whole_archive_flag_spec_F77='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $echo \"$new_convenience\"` ${wl}--no-whole-archive' tmp_addflag=' $pic_flag' ;; pgf77* | pgf90* | pgf95*) # Portland Group f77 and f90 compilers whole_archive_flag_spec_F77='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $echo \"$new_convenience\"` ${wl}--no-whole-archive' tmp_addflag=' $pic_flag -Mnomain' ;; ecc*,ia64* | icc*,ia64*) # Intel C compiler on ia64 tmp_addflag=' -i_dynamic' ;; efc*,ia64* | ifort*,ia64*) # Intel Fortran compiler on ia64 tmp_addflag=' -i_dynamic -nofor_main' ;; ifc* | ifort*) # Intel Fortran compiler tmp_addflag=' -nofor_main' ;; esac archive_cmds_F77='$CC -shared'"$tmp_addflag"' $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' if test $supports_anon_versioning = yes; then archive_expsym_cmds_F77='$echo "{ global:" > $output_objdir/$libname.ver~ cat $export_symbols | sed -e "s/\(.*\)/\1;/" >> $output_objdir/$libname.ver~ $echo "local: *; };" >> $output_objdir/$libname.ver~ $CC -shared'"$tmp_addflag"' $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-version-script ${wl}$output_objdir/$libname.ver -o $lib' fi else ld_shlibs_F77=no fi ;; netbsd*) if echo __ELF__ | $CC -E - | grep __ELF__ >/dev/null; then archive_cmds_F77='$LD -Bshareable $libobjs $deplibs $linker_flags -o $lib' wlarc= else archive_cmds_F77='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' archive_expsym_cmds_F77='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib' fi ;; solaris*) if $LD -v 2>&1 | grep 'BFD 2\.8' > /dev/null; then ld_shlibs_F77=no cat <&2 *** Warning: The releases 2.8.* of the GNU linker cannot reliably *** create shared libraries on Solaris systems. Therefore, libtool *** is disabling shared libraries support. We urge you to upgrade GNU *** binutils to release 2.9.1 or newer. Another option is to modify *** your PATH or compiler configuration so that the native linker is *** used, and then restart. EOF elif $LD --help 2>&1 | grep ': supported targets:.* elf' > /dev/null; then archive_cmds_F77='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' archive_expsym_cmds_F77='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib' else ld_shlibs_F77=no fi ;; sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX*) case `$LD -v 2>&1` in *\ [01].* | *\ 2.[0-9].* | *\ 2.1[0-5].*) ld_shlibs_F77=no cat <<_LT_EOF 1>&2 *** Warning: Releases of the GNU linker prior to 2.16.91.0.3 can not *** reliably create shared libraries on SCO systems. Therefore, libtool *** is disabling shared libraries support. We urge you to upgrade GNU *** binutils to release 2.16.91.0.3 or newer. Another option is to modify *** your PATH or compiler configuration so that the native linker is *** used, and then restart. _LT_EOF ;; *) if $LD --help 2>&1 | grep ': supported targets:.* elf' > /dev/null; then hardcode_libdir_flag_spec_F77='`test -z "$SCOABSPATH" && echo ${wl}-rpath,$libdir`' archive_cmds_F77='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname,\${SCOABSPATH:+${install_libdir}/}$soname -o $lib' archive_expsym_cmds_F77='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname,\${SCOABSPATH:+${install_libdir}/}$soname,-retain-symbols-file,$export_symbols -o $lib' else ld_shlibs_F77=no fi ;; esac ;; sunos4*) archive_cmds_F77='$LD -assert pure-text -Bshareable -o $lib $libobjs $deplibs $linker_flags' wlarc= hardcode_direct_F77=yes hardcode_shlibpath_var_F77=no ;; *) if $LD --help 2>&1 | grep ': supported targets:.* elf' > /dev/null; then archive_cmds_F77='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' archive_expsym_cmds_F77='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib' else ld_shlibs_F77=no fi ;; esac if test "$ld_shlibs_F77" = no; then runpath_var= hardcode_libdir_flag_spec_F77= export_dynamic_flag_spec_F77= whole_archive_flag_spec_F77= fi else # PORTME fill in a description of your system's linker (not GNU ld) case $host_os in aix3*) allow_undefined_flag_F77=unsupported always_export_symbols_F77=yes archive_expsym_cmds_F77='$LD -o $output_objdir/$soname $libobjs $deplibs $linker_flags -bE:$export_symbols -T512 -H512 -bM:SRE~$AR $AR_FLAGS $lib $output_objdir/$soname' # Note: this linker hardcodes the directories in LIBPATH if there # are no directories specified by -L. hardcode_minus_L_F77=yes if test "$GCC" = yes && test -z "$lt_prog_compiler_static"; then # Neither direct hardcoding nor static linking is supported with a # broken collect2. hardcode_direct_F77=unsupported fi ;; aix4* | aix5*) if test "$host_cpu" = ia64; then # On IA64, the linker does run time linking by default, so we don't # have to do anything special. aix_use_runtimelinking=no exp_sym_flag='-Bexport' no_entry_flag="" else # If we're using GNU nm, then we don't want the "-C" option. # -C means demangle to AIX nm, but means don't demangle with GNU nm if $NM -V 2>&1 | grep 'GNU' > /dev/null; then export_symbols_cmds_F77='$NM -Bpg $libobjs $convenience | awk '\''{ if (((\$2 == "T") || (\$2 == "D") || (\$2 == "B")) && (substr(\$3,1,1) != ".")) { print \$3 } }'\'' | sort -u > $export_symbols' else export_symbols_cmds_F77='$NM -BCpg $libobjs $convenience | awk '\''{ if (((\$2 == "T") || (\$2 == "D") || (\$2 == "B")) && (substr(\$3,1,1) != ".")) { print \$3 } }'\'' | sort -u > $export_symbols' fi aix_use_runtimelinking=no # Test if we are trying to use run time linking or normal # AIX style linking. 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In the cases where that is not # enough to fix the problem, add -Wl,-bbigtoc to LDFLAGS. archive_cmds_F77='' hardcode_direct_F77=yes hardcode_libdir_separator_F77=':' link_all_deplibs_F77=yes if test "$GCC" = yes; then case $host_os in aix4.[012]|aix4.[012].*) # We only want to do this on AIX 4.2 and lower, the check # below for broken collect2 doesn't work under 4.3+ collect2name=`${CC} -print-prog-name=collect2` if test -f "$collect2name" && \ strings "$collect2name" | grep resolve_lib_name >/dev/null then # We have reworked collect2 hardcode_direct_F77=yes else # We have old collect2 hardcode_direct_F77=unsupported # It fails to find uninstalled libraries when the uninstalled # path is not listed in the libpath. Setting hardcode_minus_L # to unsupported forces relinking hardcode_minus_L_F77=yes hardcode_libdir_flag_spec_F77='-L$libdir' hardcode_libdir_separator_F77= fi ;; esac shared_flag='-shared' if test "$aix_use_runtimelinking" = yes; then shared_flag="$shared_flag "'${wl}-G' fi else # not using gcc if test "$host_cpu" = ia64; then # VisualAge C++, Version 5.5 for AIX 5L for IA-64, Beta 3 Release # chokes on -Wl,-G. The following line is correct: shared_flag='-G' else if test "$aix_use_runtimelinking" = yes; then shared_flag='${wl}-G' else shared_flag='${wl}-bM:SRE' fi fi fi # It seems that -bexpall does not export symbols beginning with # underscore (_), so it is better to generate a list of symbols to export. always_export_symbols_F77=yes if test "$aix_use_runtimelinking" = yes; then # Warning - without using the other runtime loading flags (-brtl), # -berok will link without error, but may produce a broken library. allow_undefined_flag_F77='-berok' # Determine the default libpath from the value encoded in an empty executable. cat >conftest.$ac_ext <<_ACEOF program main end _ACEOF rm -f conftest.$ac_objext conftest$ac_exeext if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5 (eval $ac_link) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } && { ac_try='test -z "$ac_f77_werror_flag" || test ! -s conftest.err' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; } && { ac_try='test -s conftest$ac_exeext' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; }; then aix_libpath=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e '/Import File Strings/,/^$/ { /^0/ { s/^0 *\(.*\)$/\1/; p; } }'` # Check for a 64-bit object if we didn't find anything. if test -z "$aix_libpath"; then aix_libpath=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e '/Import File Strings/,/^$/ { /^0/ { s/^0 *\(.*\)$/\1/; p; } }'`; fi else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 fi rm -f conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext if test -z "$aix_libpath"; then aix_libpath="/usr/lib:/lib"; fi hardcode_libdir_flag_spec_F77='${wl}-blibpath:$libdir:'"$aix_libpath" archive_expsym_cmds_F77="\$CC"' -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags `if test "x${allow_undefined_flag}" != "x"; then echo "${wl}${allow_undefined_flag}"; else :; fi` '"\${wl}$exp_sym_flag:\$export_symbols $shared_flag" else if test "$host_cpu" = ia64; then hardcode_libdir_flag_spec_F77='${wl}-R $libdir:/usr/lib:/lib' allow_undefined_flag_F77="-z nodefs" archive_expsym_cmds_F77="\$CC $shared_flag"' -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags ${wl}${allow_undefined_flag} '"\${wl}$exp_sym_flag:\$export_symbols" else # Determine the default libpath from the value encoded in an empty executable. cat >conftest.$ac_ext <<_ACEOF program main end _ACEOF rm -f conftest.$ac_objext conftest$ac_exeext if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5 (eval $ac_link) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } && { ac_try='test -z "$ac_f77_werror_flag" || test ! -s conftest.err' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; } && { ac_try='test -s conftest$ac_exeext' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; }; then aix_libpath=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e '/Import File Strings/,/^$/ { /^0/ { s/^0 *\(.*\)$/\1/; p; } }'` # Check for a 64-bit object if we didn't find anything. if test -z "$aix_libpath"; then aix_libpath=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e '/Import File Strings/,/^$/ { /^0/ { s/^0 *\(.*\)$/\1/; p; } }'`; fi else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 fi rm -f conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext if test -z "$aix_libpath"; then aix_libpath="/usr/lib:/lib"; fi hardcode_libdir_flag_spec_F77='${wl}-blibpath:$libdir:'"$aix_libpath" # Warning - without using the other run time loading flags, # -berok will link without error, but may produce a broken library. no_undefined_flag_F77=' ${wl}-bernotok' allow_undefined_flag_F77=' ${wl}-berok' # Exported symbols can be pulled into shared objects from archives whole_archive_flag_spec_F77='$convenience' archive_cmds_need_lc_F77=yes # This is similar to how AIX traditionally builds its shared libraries. archive_expsym_cmds_F77="\$CC $shared_flag"' -o $output_objdir/$soname $libobjs $deplibs ${wl}-bnoentry $compiler_flags ${wl}-bE:$export_symbols${allow_undefined_flag}~$AR $AR_FLAGS $output_objdir/$libname$release.a $output_objdir/$soname' fi fi ;; amigaos*) archive_cmds_F77='$rm $output_objdir/a2ixlibrary.data~$echo "#define NAME $libname" > $output_objdir/a2ixlibrary.data~$echo "#define LIBRARY_ID 1" >> $output_objdir/a2ixlibrary.data~$echo "#define VERSION $major" >> $output_objdir/a2ixlibrary.data~$echo "#define REVISION $revision" >> $output_objdir/a2ixlibrary.data~$AR $AR_FLAGS $lib $libobjs~$RANLIB $lib~(cd $output_objdir && a2ixlibrary -32)' hardcode_libdir_flag_spec_F77='-L$libdir' hardcode_minus_L_F77=yes # see comment about different semantics on the GNU ld section ld_shlibs_F77=no ;; bsdi[45]*) export_dynamic_flag_spec_F77=-rdynamic ;; cygwin* | mingw* | pw32*) # When not using gcc, we currently assume that we are using # Microsoft Visual C++. # hardcode_libdir_flag_spec is actually meaningless, as there is # no search path for DLLs. hardcode_libdir_flag_spec_F77=' ' allow_undefined_flag_F77=unsupported # Tell ltmain to make .lib files, not .a files. libext=lib # Tell ltmain to make .dll files, not .so files. shrext_cmds=".dll" # FIXME: Setting linknames here is a bad hack. archive_cmds_F77='$CC -o $lib $libobjs $compiler_flags `echo "$deplibs" | $SED -e '\''s/ -lc$//'\''` -link -dll~linknames=' # The linker will automatically build a .lib file if we build a DLL. old_archive_From_new_cmds_F77='true' # FIXME: Should let the user specify the lib program. old_archive_cmds_F77='lib /OUT:$oldlib$oldobjs$old_deplibs' fix_srcfile_path_F77='`cygpath -w "$srcfile"`' enable_shared_with_static_runtimes_F77=yes ;; darwin* | rhapsody*) case $host_os in rhapsody* | darwin1.[012]) allow_undefined_flag_F77='${wl}-undefined ${wl}suppress' ;; *) # Darwin 1.3 on if test -z ${MACOSX_DEPLOYMENT_TARGET} ; then allow_undefined_flag_F77='${wl}-flat_namespace ${wl}-undefined ${wl}suppress' else case ${MACOSX_DEPLOYMENT_TARGET} in 10.[012]) allow_undefined_flag_F77='${wl}-flat_namespace ${wl}-undefined ${wl}suppress' ;; 10.*) allow_undefined_flag_F77='${wl}-undefined ${wl}dynamic_lookup' ;; esac fi ;; esac archive_cmds_need_lc_F77=no hardcode_direct_F77=no hardcode_automatic_F77=yes hardcode_shlibpath_var_F77=unsupported whole_archive_flag_spec_F77='' link_all_deplibs_F77=yes if test "$GCC" = yes ; then output_verbose_link_cmd='echo' archive_cmds_F77='$CC -dynamiclib $allow_undefined_flag -o $lib $libobjs $deplibs $compiler_flags -install_name $rpath/$soname $verstring' module_cmds_F77='$CC $allow_undefined_flag -o $lib -bundle $libobjs $deplibs$compiler_flags' # Don't fix this by using the ld -exported_symbols_list flag, it doesn't exist in older darwin lds archive_expsym_cmds_F77='sed -e "s,#.*,," -e "s,^[ ]*,," -e "s,^\(..*\),_&," < $export_symbols > $output_objdir/${libname}-symbols.expsym~$CC -dynamiclib $allow_undefined_flag -o $lib $libobjs $deplibs $compiler_flags -install_name $rpath/$soname $verstring~nmedit -s $output_objdir/${libname}-symbols.expsym ${lib}' module_expsym_cmds_F77='sed -e "s,#.*,," -e "s,^[ ]*,," -e "s,^\(..*\),_&," < $export_symbols > $output_objdir/${libname}-symbols.expsym~$CC $allow_undefined_flag -o $lib -bundle $libobjs $deplibs$compiler_flags~nmedit -s $output_objdir/${libname}-symbols.expsym ${lib}' else case $cc_basename in xlc*) output_verbose_link_cmd='echo' archive_cmds_F77='$CC -qmkshrobj $allow_undefined_flag -o $lib $libobjs $deplibs $compiler_flags ${wl}-install_name ${wl}`echo $rpath/$soname` $verstring' module_cmds_F77='$CC $allow_undefined_flag -o $lib -bundle $libobjs $deplibs$compiler_flags' # Don't fix this by using the ld -exported_symbols_list flag, it doesn't exist in older darwin lds archive_expsym_cmds_F77='sed -e "s,#.*,," -e "s,^[ ]*,," -e "s,^\(..*\),_&," < $export_symbols > $output_objdir/${libname}-symbols.expsym~$CC -qmkshrobj $allow_undefined_flag -o $lib $libobjs $deplibs $compiler_flags ${wl}-install_name ${wl}$rpath/$soname $verstring~nmedit -s $output_objdir/${libname}-symbols.expsym ${lib}' module_expsym_cmds_F77='sed -e "s,#.*,," -e "s,^[ ]*,," -e "s,^\(..*\),_&," < $export_symbols > $output_objdir/${libname}-symbols.expsym~$CC $allow_undefined_flag -o $lib -bundle $libobjs $deplibs$compiler_flags~nmedit -s $output_objdir/${libname}-symbols.expsym ${lib}' ;; *) ld_shlibs_F77=no ;; esac fi ;; dgux*) archive_cmds_F77='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' hardcode_libdir_flag_spec_F77='-L$libdir' hardcode_shlibpath_var_F77=no ;; freebsd1*) ld_shlibs_F77=no ;; # FreeBSD 2.2.[012] allows us to include c++rt0.o to get C++ constructor # support. Future versions do this automatically, but an explicit c++rt0.o # does not break anything, and helps significantly (at the cost of a little # extra space). freebsd2.2*) archive_cmds_F77='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags /usr/lib/c++rt0.o' hardcode_libdir_flag_spec_F77='-R$libdir' hardcode_direct_F77=yes hardcode_shlibpath_var_F77=no ;; # Unfortunately, older versions of FreeBSD 2 do not have this feature. freebsd2*) archive_cmds_F77='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' hardcode_direct_F77=yes hardcode_minus_L_F77=yes hardcode_shlibpath_var_F77=no ;; # FreeBSD 3 and greater uses gcc -shared to do shared libraries. freebsd* | kfreebsd*-gnu | dragonfly*) archive_cmds_F77='$CC -shared -o $lib $libobjs $deplibs $compiler_flags' hardcode_libdir_flag_spec_F77='-R$libdir' hardcode_direct_F77=yes hardcode_shlibpath_var_F77=no ;; hpux9*) if test "$GCC" = yes; then archive_cmds_F77='$rm $output_objdir/$soname~$CC -shared -fPIC ${wl}+b ${wl}$install_libdir -o $output_objdir/$soname $libobjs $deplibs $compiler_flags~test $output_objdir/$soname = $lib || mv $output_objdir/$soname $lib' else archive_cmds_F77='$rm $output_objdir/$soname~$LD -b +b $install_libdir -o $output_objdir/$soname $libobjs $deplibs $linker_flags~test $output_objdir/$soname = $lib || mv $output_objdir/$soname $lib' fi hardcode_libdir_flag_spec_F77='${wl}+b ${wl}$libdir' hardcode_libdir_separator_F77=: hardcode_direct_F77=yes # hardcode_minus_L: Not really in the search PATH, # but as the default location of the library. hardcode_minus_L_F77=yes export_dynamic_flag_spec_F77='${wl}-E' ;; hpux10*) if test "$GCC" = yes -a "$with_gnu_ld" = no; then archive_cmds_F77='$CC -shared -fPIC ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags' else archive_cmds_F77='$LD -b +h $soname +b $install_libdir -o $lib $libobjs $deplibs $linker_flags' fi if test "$with_gnu_ld" = no; then hardcode_libdir_flag_spec_F77='${wl}+b ${wl}$libdir' hardcode_libdir_separator_F77=: hardcode_direct_F77=yes export_dynamic_flag_spec_F77='${wl}-E' # hardcode_minus_L: Not really in the search PATH, # but as the default location of the library. hardcode_minus_L_F77=yes fi ;; hpux11*) if test "$GCC" = yes -a "$with_gnu_ld" = no; then case $host_cpu in hppa*64*) archive_cmds_F77='$CC -shared ${wl}+h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags' ;; ia64*) archive_cmds_F77='$CC -shared ${wl}+h ${wl}$soname ${wl}+nodefaultrpath -o $lib $libobjs $deplibs $compiler_flags' ;; *) archive_cmds_F77='$CC -shared -fPIC ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags' ;; esac else case $host_cpu in hppa*64*) archive_cmds_F77='$CC -b ${wl}+h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags' ;; ia64*) archive_cmds_F77='$CC -b ${wl}+h ${wl}$soname ${wl}+nodefaultrpath -o $lib $libobjs $deplibs $compiler_flags' ;; *) archive_cmds_F77='$CC -b ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags' ;; esac fi if test "$with_gnu_ld" = no; then hardcode_libdir_flag_spec_F77='${wl}+b ${wl}$libdir' hardcode_libdir_separator_F77=: case $host_cpu in hppa*64*|ia64*) hardcode_libdir_flag_spec_ld_F77='+b $libdir' hardcode_direct_F77=no hardcode_shlibpath_var_F77=no ;; *) hardcode_direct_F77=yes export_dynamic_flag_spec_F77='${wl}-E' # hardcode_minus_L: Not really in the search PATH, # but as the default location of the library. hardcode_minus_L_F77=yes ;; esac fi ;; irix5* | irix6* | nonstopux*) if test "$GCC" = yes; then archive_cmds_F77='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && echo ${wl}-set_version ${wl}$verstring` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib' else archive_cmds_F77='$LD -shared $libobjs $deplibs $linker_flags -soname $soname `test -n "$verstring" && echo -set_version $verstring` -update_registry ${output_objdir}/so_locations -o $lib' hardcode_libdir_flag_spec_ld_F77='-rpath $libdir' fi hardcode_libdir_flag_spec_F77='${wl}-rpath ${wl}$libdir' hardcode_libdir_separator_F77=: link_all_deplibs_F77=yes ;; netbsd*) if echo __ELF__ | $CC -E - | grep __ELF__ >/dev/null; then archive_cmds_F77='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' # a.out else archive_cmds_F77='$LD -shared -o $lib $libobjs $deplibs $linker_flags' # ELF fi hardcode_libdir_flag_spec_F77='-R$libdir' hardcode_direct_F77=yes hardcode_shlibpath_var_F77=no ;; newsos6) archive_cmds_F77='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' hardcode_direct_F77=yes hardcode_libdir_flag_spec_F77='${wl}-rpath ${wl}$libdir' hardcode_libdir_separator_F77=: hardcode_shlibpath_var_F77=no ;; openbsd*) hardcode_direct_F77=yes hardcode_shlibpath_var_F77=no if test -z "`echo __ELF__ | $CC -E - | grep __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then archive_cmds_F77='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags' archive_expsym_cmds_F77='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags ${wl}-retain-symbols-file,$export_symbols' hardcode_libdir_flag_spec_F77='${wl}-rpath,$libdir' export_dynamic_flag_spec_F77='${wl}-E' else case $host_os in openbsd[01].* | openbsd2.[0-7] | openbsd2.[0-7].*) archive_cmds_F77='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' hardcode_libdir_flag_spec_F77='-R$libdir' ;; *) archive_cmds_F77='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags' hardcode_libdir_flag_spec_F77='${wl}-rpath,$libdir' ;; esac fi ;; os2*) hardcode_libdir_flag_spec_F77='-L$libdir' hardcode_minus_L_F77=yes allow_undefined_flag_F77=unsupported archive_cmds_F77='$echo "LIBRARY $libname INITINSTANCE" > $output_objdir/$libname.def~$echo "DESCRIPTION \"$libname\"" >> $output_objdir/$libname.def~$echo DATA >> $output_objdir/$libname.def~$echo " SINGLE NONSHARED" >> $output_objdir/$libname.def~$echo EXPORTS >> $output_objdir/$libname.def~emxexp $libobjs >> $output_objdir/$libname.def~$CC -Zdll -Zcrtdll -o $lib $libobjs $deplibs $compiler_flags $output_objdir/$libname.def' old_archive_From_new_cmds_F77='emximp -o $output_objdir/$libname.a $output_objdir/$libname.def' ;; osf3*) if test "$GCC" = yes; then allow_undefined_flag_F77=' ${wl}-expect_unresolved ${wl}\*' archive_cmds_F77='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && echo ${wl}-set_version ${wl}$verstring` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib' else allow_undefined_flag_F77=' -expect_unresolved \*' archive_cmds_F77='$LD -shared${allow_undefined_flag} $libobjs $deplibs $linker_flags -soname $soname `test -n "$verstring" && echo -set_version $verstring` -update_registry ${output_objdir}/so_locations -o $lib' fi hardcode_libdir_flag_spec_F77='${wl}-rpath ${wl}$libdir' hardcode_libdir_separator_F77=: ;; osf4* | osf5*) # as osf3* with the addition of -msym flag if test "$GCC" = yes; then allow_undefined_flag_F77=' ${wl}-expect_unresolved ${wl}\*' archive_cmds_F77='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags ${wl}-msym ${wl}-soname ${wl}$soname `test -n "$verstring" && echo ${wl}-set_version ${wl}$verstring` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib' hardcode_libdir_flag_spec_F77='${wl}-rpath ${wl}$libdir' else allow_undefined_flag_F77=' -expect_unresolved \*' archive_cmds_F77='$LD -shared${allow_undefined_flag} $libobjs $deplibs $linker_flags -msym -soname $soname `test -n "$verstring" && echo -set_version $verstring` -update_registry ${output_objdir}/so_locations -o $lib' archive_expsym_cmds_F77='for i in `cat $export_symbols`; do printf "%s %s\\n" -exported_symbol "\$i" >> $lib.exp; done; echo "-hidden">> $lib.exp~ $LD -shared${allow_undefined_flag} -input $lib.exp $linker_flags $libobjs $deplibs -soname $soname `test -n "$verstring" && echo -set_version $verstring` -update_registry ${output_objdir}/so_locations -o $lib~$rm $lib.exp' # Both c and cxx compiler support -rpath directly hardcode_libdir_flag_spec_F77='-rpath $libdir' fi hardcode_libdir_separator_F77=: ;; solaris*) no_undefined_flag_F77=' -z text' if test "$GCC" = yes; then wlarc='${wl}' archive_cmds_F77='$CC -shared ${wl}-h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags' archive_expsym_cmds_F77='$echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~$echo "local: *; };" >> $lib.exp~ $CC -shared ${wl}-M ${wl}$lib.exp ${wl}-h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags~$rm $lib.exp' else wlarc='' archive_cmds_F77='$LD -G${allow_undefined_flag} -h $soname -o $lib $libobjs $deplibs $linker_flags' archive_expsym_cmds_F77='$echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~$echo "local: *; };" >> $lib.exp~ $LD -G${allow_undefined_flag} -M $lib.exp -h $soname -o $lib $libobjs $deplibs $linker_flags~$rm $lib.exp' fi hardcode_libdir_flag_spec_F77='-R$libdir' hardcode_shlibpath_var_F77=no case $host_os in solaris2.[0-5] | solaris2.[0-5].*) ;; *) # The compiler driver will combine linker options so we # cannot just pass the convience library names through # without $wl, iff we do not link with $LD. # Luckily, gcc supports the same syntax we need for Sun Studio. # Supported since Solaris 2.6 (maybe 2.5.1?) case $wlarc in '') whole_archive_flag_spec_F77='-z allextract$convenience -z defaultextract' ;; *) whole_archive_flag_spec_F77='${wl}-z ${wl}allextract`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $echo \"$new_convenience\"` ${wl}-z ${wl}defaultextract' ;; esac ;; esac link_all_deplibs_F77=yes ;; sunos4*) if test "x$host_vendor" = xsequent; then # Use $CC to link under sequent, because it throws in some extra .o # files that make .init and .fini sections work. archive_cmds_F77='$CC -G ${wl}-h $soname -o $lib $libobjs $deplibs $compiler_flags' else archive_cmds_F77='$LD -assert pure-text -Bstatic -o $lib $libobjs $deplibs $linker_flags' fi hardcode_libdir_flag_spec_F77='-L$libdir' hardcode_direct_F77=yes hardcode_minus_L_F77=yes hardcode_shlibpath_var_F77=no ;; sysv4) case $host_vendor in sni) archive_cmds_F77='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' hardcode_direct_F77=yes # is this really true??? ;; siemens) ## LD is ld it makes a PLAMLIB ## CC just makes a GrossModule. archive_cmds_F77='$LD -G -o $lib $libobjs $deplibs $linker_flags' reload_cmds_F77='$CC -r -o $output$reload_objs' hardcode_direct_F77=no ;; motorola) archive_cmds_F77='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' hardcode_direct_F77=no #Motorola manual says yes, but my tests say they lie ;; esac runpath_var='LD_RUN_PATH' hardcode_shlibpath_var_F77=no ;; sysv4.3*) archive_cmds_F77='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' hardcode_shlibpath_var_F77=no export_dynamic_flag_spec_F77='-Bexport' ;; sysv4*MP*) if test -d /usr/nec; then archive_cmds_F77='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' hardcode_shlibpath_var_F77=no runpath_var=LD_RUN_PATH hardcode_runpath_var=yes ld_shlibs_F77=yes fi ;; sysv4*uw2* | sysv5OpenUNIX* | sysv5UnixWare7.[01].[10]* | unixware7*) no_undefined_flag_F77='${wl}-z,text' archive_cmds_need_lc_F77=no hardcode_shlibpath_var_F77=no runpath_var='LD_RUN_PATH' if test "$GCC" = yes; then archive_cmds_F77='$CC -shared ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags' archive_expsym_cmds_F77='$CC -shared ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags' else archive_cmds_F77='$CC -G ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags' archive_expsym_cmds_F77='$CC -G ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags' fi ;; sysv5* | sco3.2v5* | sco5v6*) # Note: We can NOT use -z defs as we might desire, because we do not # link with -lc, and that would cause any symbols used from libc to # always be unresolved, which means just about no library would # ever link correctly. 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esac ;; gnu*) version_type=linux need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}${major} ${libname}${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH hardcode_into_libs=yes ;; hpux9* | hpux10* | hpux11*) # Give a soname corresponding to the major version so that dld.sl refuses to # link against other versions. version_type=sunos need_lib_prefix=no need_version=no case $host_cpu in ia64*) shrext_cmds='.so' hardcode_into_libs=yes dynamic_linker="$host_os dld.so" shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=yes # Unless +noenvvar is specified. library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' if test "X$HPUX_IA64_MODE" = X32; then sys_lib_search_path_spec="/usr/lib/hpux32 /usr/local/lib/hpux32 /usr/local/lib" else sys_lib_search_path_spec="/usr/lib/hpux64 /usr/local/lib/hpux64" fi sys_lib_dlsearch_path_spec=$sys_lib_search_path_spec ;; 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esac fi rm -rf conftest* ;; esac # Append ld.so.conf contents to the search path if test -f /etc/ld.so.conf; then lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra" fi # We used to test for /lib/ld.so.1 and disable shared libraries on # powerpc, because MkLinux only supported shared libraries with the # GNU dynamic linker. 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lt_prog_compiler_static_GCJ='${wl}-a ${wl}archive' ;; irix5* | irix6* | nonstopux*) lt_prog_compiler_wl_GCJ='-Wl,' # PIC (with -KPIC) is the default. lt_prog_compiler_static_GCJ='-non_shared' ;; newsos6) lt_prog_compiler_pic_GCJ='-KPIC' lt_prog_compiler_static_GCJ='-Bstatic' ;; linux*) case $cc_basename in icc* | ecc*) lt_prog_compiler_wl_GCJ='-Wl,' lt_prog_compiler_pic_GCJ='-KPIC' lt_prog_compiler_static_GCJ='-static' ;; pgcc* | pgf77* | pgf90* | pgf95*) # Portland Group compilers (*not* the Pentium gcc compiler, # which looks to be a dead project) lt_prog_compiler_wl_GCJ='-Wl,' lt_prog_compiler_pic_GCJ='-fpic' lt_prog_compiler_static_GCJ='-Bstatic' ;; ccc*) lt_prog_compiler_wl_GCJ='-Wl,' # All Alpha code is PIC. lt_prog_compiler_static_GCJ='-non_shared' ;; esac ;; osf3* | osf4* | osf5*) lt_prog_compiler_wl_GCJ='-Wl,' # All OSF/1 code is PIC. lt_prog_compiler_static_GCJ='-non_shared' ;; solaris*) lt_prog_compiler_pic_GCJ='-KPIC' lt_prog_compiler_static_GCJ='-Bstatic' case $cc_basename in f77* | f90* | f95*) lt_prog_compiler_wl_GCJ='-Qoption ld ';; *) lt_prog_compiler_wl_GCJ='-Wl,';; esac ;; sunos4*) lt_prog_compiler_wl_GCJ='-Qoption ld ' lt_prog_compiler_pic_GCJ='-PIC' lt_prog_compiler_static_GCJ='-Bstatic' ;; sysv4 | sysv4.2uw2* | sysv4.3*) lt_prog_compiler_wl_GCJ='-Wl,' lt_prog_compiler_pic_GCJ='-KPIC' lt_prog_compiler_static_GCJ='-Bstatic' ;; sysv4*MP*) if test -d /usr/nec ;then lt_prog_compiler_pic_GCJ='-Kconform_pic' lt_prog_compiler_static_GCJ='-Bstatic' fi ;; sysv5* | unixware* | sco3.2v5* | sco5v6* | OpenUNIX*) lt_prog_compiler_wl_GCJ='-Wl,' lt_prog_compiler_pic_GCJ='-KPIC' lt_prog_compiler_static_GCJ='-Bstatic' ;; unicos*) lt_prog_compiler_wl_GCJ='-Wl,' lt_prog_compiler_can_build_shared_GCJ=no ;; uts4*) lt_prog_compiler_pic_GCJ='-pic' lt_prog_compiler_static_GCJ='-Bstatic' ;; *) lt_prog_compiler_can_build_shared_GCJ=no ;; esac fi echo "$as_me:$LINENO: result: $lt_prog_compiler_pic_GCJ" >&5 echo "${ECHO_T}$lt_prog_compiler_pic_GCJ" >&6 # # Check to make sure the PIC flag actually works. # if test -n "$lt_prog_compiler_pic_GCJ"; then echo "$as_me:$LINENO: checking if $compiler PIC flag $lt_prog_compiler_pic_GCJ works" >&5 echo $ECHO_N "checking if $compiler PIC flag $lt_prog_compiler_pic_GCJ works... $ECHO_C" >&6 if test "${lt_prog_compiler_pic_works_GCJ+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else lt_prog_compiler_pic_works_GCJ=no ac_outfile=conftest.$ac_objext printf "$lt_simple_compile_test_code" > conftest.$ac_ext lt_compiler_flag="$lt_prog_compiler_pic_GCJ" # Insert the option either (1) after the last *FLAGS variable, or # (2) before a word containing "conftest.", or (3) at the end. # Note that $ac_compile itself does not contain backslashes and begins # with a dollar sign (not a hyphen), so the echo should work correctly. # The option is referenced via a variable to avoid confusing sed. lt_compile=`echo "$ac_compile" | $SED \ -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` (eval echo "\"\$as_me:15857: $lt_compile\"" >&5) (eval "$lt_compile" 2>conftest.err) ac_status=$? cat conftest.err >&5 echo "$as_me:15861: \$? = $ac_status" >&5 if (exit $ac_status) && test -s "$ac_outfile"; then # The compiler can only warn and ignore the option if not recognized # So say no if there are warnings other than the usual output. $echo "X$_lt_compiler_boilerplate" | $Xsed -e '/^$/d' >conftest.exp $SED '/^$/d; /^ *+/d' conftest.err >conftest.er2 if test ! -s conftest.er2 || diff conftest.exp conftest.er2 >/dev/null; then lt_prog_compiler_pic_works_GCJ=yes fi fi $rm conftest* fi echo "$as_me:$LINENO: result: $lt_prog_compiler_pic_works_GCJ" >&5 echo "${ECHO_T}$lt_prog_compiler_pic_works_GCJ" >&6 if test x"$lt_prog_compiler_pic_works_GCJ" = xyes; then case $lt_prog_compiler_pic_GCJ in "" | " "*) ;; *) lt_prog_compiler_pic_GCJ=" $lt_prog_compiler_pic_GCJ" ;; esac else lt_prog_compiler_pic_GCJ= lt_prog_compiler_can_build_shared_GCJ=no fi fi case $host_os in # For platforms which do not support PIC, -DPIC is meaningless: *djgpp*) lt_prog_compiler_pic_GCJ= ;; *) lt_prog_compiler_pic_GCJ="$lt_prog_compiler_pic_GCJ" ;; esac # # Check to make sure the static flag actually works. # wl=$lt_prog_compiler_wl_GCJ eval lt_tmp_static_flag=\"$lt_prog_compiler_static_GCJ\" echo "$as_me:$LINENO: checking if $compiler static flag $lt_tmp_static_flag works" >&5 echo $ECHO_N "checking if $compiler static flag $lt_tmp_static_flag works... $ECHO_C" >&6 if test "${lt_prog_compiler_static_works_GCJ+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else lt_prog_compiler_static_works_GCJ=no save_LDFLAGS="$LDFLAGS" LDFLAGS="$LDFLAGS $lt_tmp_static_flag" printf "$lt_simple_link_test_code" > conftest.$ac_ext if (eval $ac_link 2>conftest.err) && test -s conftest$ac_exeext; then # The linker can only warn and ignore the option if not recognized # So say no if there are warnings if test -s conftest.err; then # Append any errors to the config.log. cat conftest.err 1>&5 $echo "X$_lt_linker_boilerplate" | $Xsed -e '/^$/d' > conftest.exp $SED '/^$/d; /^ *+/d' conftest.err >conftest.er2 if diff conftest.exp conftest.er2 >/dev/null; then lt_prog_compiler_static_works_GCJ=yes fi else lt_prog_compiler_static_works_GCJ=yes fi fi $rm conftest* LDFLAGS="$save_LDFLAGS" fi echo "$as_me:$LINENO: result: $lt_prog_compiler_static_works_GCJ" >&5 echo "${ECHO_T}$lt_prog_compiler_static_works_GCJ" >&6 if test x"$lt_prog_compiler_static_works_GCJ" = xyes; then : else lt_prog_compiler_static_GCJ= fi echo "$as_me:$LINENO: checking if $compiler supports -c -o file.$ac_objext" >&5 echo $ECHO_N "checking if $compiler supports -c -o file.$ac_objext... $ECHO_C" >&6 if test "${lt_cv_prog_compiler_c_o_GCJ+set}" = set; then echo $ECHO_N "(cached) $ECHO_C" >&6 else lt_cv_prog_compiler_c_o_GCJ=no $rm -r conftest 2>/dev/null mkdir conftest cd conftest mkdir out printf "$lt_simple_compile_test_code" > conftest.$ac_ext lt_compiler_flag="-o out/conftest2.$ac_objext" # Insert the option either (1) after the last *FLAGS variable, or # (2) before a word containing "conftest.", or (3) at the end. # Note that $ac_compile itself does not contain backslashes and begins # with a dollar sign (not a hyphen), so the echo should work correctly. lt_compile=`echo "$ac_compile" | $SED \ -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` (eval echo "\"\$as_me:15961: $lt_compile\"" >&5) (eval "$lt_compile" 2>out/conftest.err) ac_status=$? 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FIXME archive_cmds_GCJ='$CC -nostart $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' else ld_shlibs_GCJ=no fi ;; cygwin* | mingw* | pw32*) # _LT_AC_TAGVAR(hardcode_libdir_flag_spec, GCJ) is actually meaningless, # as there is no search path for DLLs. hardcode_libdir_flag_spec_GCJ='-L$libdir' allow_undefined_flag_GCJ=unsupported always_export_symbols_GCJ=no enable_shared_with_static_runtimes_GCJ=yes export_symbols_cmds_GCJ='$NM $libobjs $convenience | $global_symbol_pipe | $SED -e '\''/^[BCDGRS] /s/.* \([^ ]*\)/\1 DATA/'\'' | $SED -e '\''/^[AITW] /s/.* //'\'' | sort | uniq > $export_symbols' if $LD --help 2>&1 | grep 'auto-import' > /dev/null; then archive_cmds_GCJ='$CC -shared $libobjs $deplibs $compiler_flags -o $output_objdir/$soname ${wl}--enable-auto-image-base -Xlinker --out-implib -Xlinker $lib' # If the export-symbols file already is a .def file (1st line # is EXPORTS), use it as is; otherwise, prepend... archive_expsym_cmds_GCJ='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then cp $export_symbols $output_objdir/$soname.def; else echo EXPORTS > $output_objdir/$soname.def; cat $export_symbols >> $output_objdir/$soname.def; fi~ $CC -shared $output_objdir/$soname.def $libobjs $deplibs $compiler_flags -o $output_objdir/$soname ${wl}--enable-auto-image-base -Xlinker --out-implib -Xlinker $lib' else ld_shlibs_GCJ=no fi ;; interix3*) hardcode_direct_GCJ=no hardcode_shlibpath_var_GCJ=no hardcode_libdir_flag_spec_GCJ='${wl}-rpath,$libdir' export_dynamic_flag_spec_GCJ='${wl}-E' # Hack: On Interix 3.x, we cannot compile PIC because of a broken gcc. # Instead, shared libraries are loaded at an image base (0x10000000 by # default) and relocated if they conflict, which is a slow very memory # consuming and fragmenting process. To avoid this, we pick a random, # 256 KiB-aligned image base between 0x50000000 and 0x6FFC0000 at link # time. Moving up from 0x10000000 also allows more sbrk(2) space. archive_cmds_GCJ='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib' archive_expsym_cmds_GCJ='sed "s,^,_," $export_symbols >$output_objdir/$soname.expsym~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--retain-symbols-file,$output_objdir/$soname.expsym ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib' ;; linux*) if $LD --help 2>&1 | grep ': supported targets:.* elf' > /dev/null; then tmp_addflag= case $cc_basename,$host_cpu in pgcc*) # Portland Group C compiler whole_archive_flag_spec_GCJ='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $echo \"$new_convenience\"` ${wl}--no-whole-archive' tmp_addflag=' $pic_flag' ;; pgf77* | pgf90* | pgf95*) # Portland Group f77 and f90 compilers whole_archive_flag_spec_GCJ='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $echo \"$new_convenience\"` ${wl}--no-whole-archive' tmp_addflag=' $pic_flag -Mnomain' ;; ecc*,ia64* | icc*,ia64*) # Intel C compiler on ia64 tmp_addflag=' -i_dynamic' ;; efc*,ia64* | ifort*,ia64*) # Intel Fortran compiler on ia64 tmp_addflag=' -i_dynamic -nofor_main' ;; ifc* | ifort*) # Intel Fortran compiler tmp_addflag=' -nofor_main' ;; esac archive_cmds_GCJ='$CC -shared'"$tmp_addflag"' $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' if test $supports_anon_versioning = yes; then archive_expsym_cmds_GCJ='$echo "{ global:" > $output_objdir/$libname.ver~ cat $export_symbols | sed -e "s/\(.*\)/\1;/" >> $output_objdir/$libname.ver~ $echo "local: *; };" >> $output_objdir/$libname.ver~ $CC -shared'"$tmp_addflag"' $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-version-script ${wl}$output_objdir/$libname.ver -o $lib' fi else ld_shlibs_GCJ=no fi ;; netbsd*) if echo __ELF__ | $CC -E - | grep __ELF__ >/dev/null; then archive_cmds_GCJ='$LD -Bshareable $libobjs $deplibs $linker_flags -o $lib' wlarc= else archive_cmds_GCJ='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' archive_expsym_cmds_GCJ='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib' fi ;; solaris*) if $LD -v 2>&1 | grep 'BFD 2\.8' > /dev/null; then ld_shlibs_GCJ=no cat <&2 *** Warning: The releases 2.8.* of the GNU linker cannot reliably *** create shared libraries on Solaris systems. Therefore, libtool *** is disabling shared libraries support. We urge you to upgrade GNU *** binutils to release 2.9.1 or newer. Another option is to modify *** your PATH or compiler configuration so that the native linker is *** used, and then restart. EOF elif $LD --help 2>&1 | grep ': supported targets:.* elf' > /dev/null; then archive_cmds_GCJ='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' archive_expsym_cmds_GCJ='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib' else ld_shlibs_GCJ=no fi ;; sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX*) case `$LD -v 2>&1` in *\ [01].* | *\ 2.[0-9].* | *\ 2.1[0-5].*) ld_shlibs_GCJ=no cat <<_LT_EOF 1>&2 *** Warning: Releases of the GNU linker prior to 2.16.91.0.3 can not *** reliably create shared libraries on SCO systems. Therefore, libtool *** is disabling shared libraries support. We urge you to upgrade GNU *** binutils to release 2.16.91.0.3 or newer. Another option is to modify *** your PATH or compiler configuration so that the native linker is *** used, and then restart. _LT_EOF ;; *) if $LD --help 2>&1 | grep ': supported targets:.* elf' > /dev/null; then hardcode_libdir_flag_spec_GCJ='`test -z "$SCOABSPATH" && echo ${wl}-rpath,$libdir`' archive_cmds_GCJ='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname,\${SCOABSPATH:+${install_libdir}/}$soname -o $lib' archive_expsym_cmds_GCJ='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname,\${SCOABSPATH:+${install_libdir}/}$soname,-retain-symbols-file,$export_symbols -o $lib' else ld_shlibs_GCJ=no fi ;; esac ;; sunos4*) archive_cmds_GCJ='$LD -assert pure-text -Bshareable -o $lib $libobjs $deplibs $linker_flags' wlarc= hardcode_direct_GCJ=yes hardcode_shlibpath_var_GCJ=no ;; *) if $LD --help 2>&1 | grep ': supported targets:.* elf' > /dev/null; then archive_cmds_GCJ='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' archive_expsym_cmds_GCJ='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib' else ld_shlibs_GCJ=no fi ;; esac if test "$ld_shlibs_GCJ" = no; then runpath_var= hardcode_libdir_flag_spec_GCJ= export_dynamic_flag_spec_GCJ= whole_archive_flag_spec_GCJ= fi else # PORTME fill in a description of your system's linker (not GNU ld) case $host_os in aix3*) allow_undefined_flag_GCJ=unsupported always_export_symbols_GCJ=yes archive_expsym_cmds_GCJ='$LD -o $output_objdir/$soname $libobjs $deplibs $linker_flags -bE:$export_symbols -T512 -H512 -bM:SRE~$AR $AR_FLAGS $lib $output_objdir/$soname' # Note: this linker hardcodes the directories in LIBPATH if there # are no directories specified by -L. hardcode_minus_L_GCJ=yes if test "$GCC" = yes && test -z "$lt_prog_compiler_static"; then # Neither direct hardcoding nor static linking is supported with a # broken collect2. hardcode_direct_GCJ=unsupported fi ;; aix4* | aix5*) if test "$host_cpu" = ia64; then # On IA64, the linker does run time linking by default, so we don't # have to do anything special. aix_use_runtimelinking=no exp_sym_flag='-Bexport' no_entry_flag="" else # If we're using GNU nm, then we don't want the "-C" option. # -C means demangle to AIX nm, but means don't demangle with GNU nm if $NM -V 2>&1 | grep 'GNU' > /dev/null; then export_symbols_cmds_GCJ='$NM -Bpg $libobjs $convenience | awk '\''{ if (((\$2 == "T") || (\$2 == "D") || (\$2 == "B")) && (substr(\$3,1,1) != ".")) { print \$3 } }'\'' | sort -u > $export_symbols' else export_symbols_cmds_GCJ='$NM -BCpg $libobjs $convenience | awk '\''{ if (((\$2 == "T") || (\$2 == "D") || (\$2 == "B")) && (substr(\$3,1,1) != ".")) { print \$3 } }'\'' | sort -u > $export_symbols' fi aix_use_runtimelinking=no # Test if we are trying to use run time linking or normal # AIX style linking. If -brtl is somewhere in LDFLAGS, we # need to do runtime linking. case $host_os in aix4.[23]|aix4.[23].*|aix5*) for ld_flag in $LDFLAGS; do if (test $ld_flag = "-brtl" || test $ld_flag = "-Wl,-brtl"); then aix_use_runtimelinking=yes break fi done ;; esac exp_sym_flag='-bexport' no_entry_flag='-bnoentry' fi # When large executables or shared objects are built, AIX ld can # have problems creating the table of contents. If linking a library # or program results in "error TOC overflow" add -mminimal-toc to # CXXFLAGS/CFLAGS for g++/gcc. In the cases where that is not # enough to fix the problem, add -Wl,-bbigtoc to LDFLAGS. archive_cmds_GCJ='' hardcode_direct_GCJ=yes hardcode_libdir_separator_GCJ=':' link_all_deplibs_GCJ=yes if test "$GCC" = yes; then case $host_os in aix4.[012]|aix4.[012].*) # We only want to do this on AIX 4.2 and lower, the check # below for broken collect2 doesn't work under 4.3+ collect2name=`${CC} -print-prog-name=collect2` if test -f "$collect2name" && \ strings "$collect2name" | grep resolve_lib_name >/dev/null then # We have reworked collect2 hardcode_direct_GCJ=yes else # We have old collect2 hardcode_direct_GCJ=unsupported # It fails to find uninstalled libraries when the uninstalled # path is not listed in the libpath. Setting hardcode_minus_L # to unsupported forces relinking hardcode_minus_L_GCJ=yes hardcode_libdir_flag_spec_GCJ='-L$libdir' hardcode_libdir_separator_GCJ= fi ;; esac shared_flag='-shared' if test "$aix_use_runtimelinking" = yes; then shared_flag="$shared_flag "'${wl}-G' fi else # not using gcc if test "$host_cpu" = ia64; then # VisualAge C++, Version 5.5 for AIX 5L for IA-64, Beta 3 Release # chokes on -Wl,-G. The following line is correct: shared_flag='-G' else if test "$aix_use_runtimelinking" = yes; then shared_flag='${wl}-G' else shared_flag='${wl}-bM:SRE' fi fi fi # It seems that -bexpall does not export symbols beginning with # underscore (_), so it is better to generate a list of symbols to export. always_export_symbols_GCJ=yes if test "$aix_use_runtimelinking" = yes; then # Warning - without using the other runtime loading flags (-brtl), # -berok will link without error, but may produce a broken library. allow_undefined_flag_GCJ='-berok' # Determine the default libpath from the value encoded in an empty executable. cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ int main () { ; return 0; } _ACEOF rm -f conftest.$ac_objext conftest$ac_exeext if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5 (eval $ac_link) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } && { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; } && { ac_try='test -s conftest$ac_exeext' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; }; then aix_libpath=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e '/Import File Strings/,/^$/ { /^0/ { s/^0 *\(.*\)$/\1/; p; } }'` # Check for a 64-bit object if we didn't find anything. if test -z "$aix_libpath"; then aix_libpath=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e '/Import File Strings/,/^$/ { /^0/ { s/^0 *\(.*\)$/\1/; p; } }'`; fi else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 fi rm -f conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext if test -z "$aix_libpath"; then aix_libpath="/usr/lib:/lib"; fi hardcode_libdir_flag_spec_GCJ='${wl}-blibpath:$libdir:'"$aix_libpath" archive_expsym_cmds_GCJ="\$CC"' -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags `if test "x${allow_undefined_flag}" != "x"; then echo "${wl}${allow_undefined_flag}"; else :; fi` '"\${wl}$exp_sym_flag:\$export_symbols $shared_flag" else if test "$host_cpu" = ia64; then hardcode_libdir_flag_spec_GCJ='${wl}-R $libdir:/usr/lib:/lib' allow_undefined_flag_GCJ="-z nodefs" archive_expsym_cmds_GCJ="\$CC $shared_flag"' -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags ${wl}${allow_undefined_flag} '"\${wl}$exp_sym_flag:\$export_symbols" else # Determine the default libpath from the value encoded in an empty executable. cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ int main () { ; return 0; } _ACEOF rm -f conftest.$ac_objext conftest$ac_exeext if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5 (eval $ac_link) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } && { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; } && { ac_try='test -s conftest$ac_exeext' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; }; then aix_libpath=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e '/Import File Strings/,/^$/ { /^0/ { s/^0 *\(.*\)$/\1/; p; } }'` # Check for a 64-bit object if we didn't find anything. if test -z "$aix_libpath"; then aix_libpath=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e '/Import File Strings/,/^$/ { /^0/ { s/^0 *\(.*\)$/\1/; p; } }'`; fi else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 fi rm -f conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext if test -z "$aix_libpath"; then aix_libpath="/usr/lib:/lib"; fi hardcode_libdir_flag_spec_GCJ='${wl}-blibpath:$libdir:'"$aix_libpath" # Warning - without using the other run time loading flags, # -berok will link without error, but may produce a broken library. no_undefined_flag_GCJ=' ${wl}-bernotok' allow_undefined_flag_GCJ=' ${wl}-berok' # Exported symbols can be pulled into shared objects from archives whole_archive_flag_spec_GCJ='$convenience' archive_cmds_need_lc_GCJ=yes # This is similar to how AIX traditionally builds its shared libraries. archive_expsym_cmds_GCJ="\$CC $shared_flag"' -o $output_objdir/$soname $libobjs $deplibs ${wl}-bnoentry $compiler_flags ${wl}-bE:$export_symbols${allow_undefined_flag}~$AR $AR_FLAGS $output_objdir/$libname$release.a $output_objdir/$soname' fi fi ;; amigaos*) archive_cmds_GCJ='$rm $output_objdir/a2ixlibrary.data~$echo "#define NAME $libname" > $output_objdir/a2ixlibrary.data~$echo "#define LIBRARY_ID 1" >> $output_objdir/a2ixlibrary.data~$echo "#define VERSION $major" >> $output_objdir/a2ixlibrary.data~$echo "#define REVISION $revision" >> $output_objdir/a2ixlibrary.data~$AR $AR_FLAGS $lib $libobjs~$RANLIB $lib~(cd $output_objdir && a2ixlibrary -32)' hardcode_libdir_flag_spec_GCJ='-L$libdir' hardcode_minus_L_GCJ=yes # see comment about different semantics on the GNU ld section ld_shlibs_GCJ=no ;; bsdi[45]*) export_dynamic_flag_spec_GCJ=-rdynamic ;; cygwin* | mingw* | pw32*) # When not using gcc, we currently assume that we are using # Microsoft Visual C++. # hardcode_libdir_flag_spec is actually meaningless, as there is # no search path for DLLs. hardcode_libdir_flag_spec_GCJ=' ' allow_undefined_flag_GCJ=unsupported # Tell ltmain to make .lib files, not .a files. libext=lib # Tell ltmain to make .dll files, not .so files. shrext_cmds=".dll" # FIXME: Setting linknames here is a bad hack. archive_cmds_GCJ='$CC -o $lib $libobjs $compiler_flags `echo "$deplibs" | $SED -e '\''s/ -lc$//'\''` -link -dll~linknames=' # The linker will automatically build a .lib file if we build a DLL. old_archive_From_new_cmds_GCJ='true' # FIXME: Should let the user specify the lib program. old_archive_cmds_GCJ='lib /OUT:$oldlib$oldobjs$old_deplibs' fix_srcfile_path_GCJ='`cygpath -w "$srcfile"`' enable_shared_with_static_runtimes_GCJ=yes ;; darwin* | rhapsody*) case $host_os in rhapsody* | darwin1.[012]) allow_undefined_flag_GCJ='${wl}-undefined ${wl}suppress' ;; *) # Darwin 1.3 on if test -z ${MACOSX_DEPLOYMENT_TARGET} ; then allow_undefined_flag_GCJ='${wl}-flat_namespace ${wl}-undefined ${wl}suppress' else case ${MACOSX_DEPLOYMENT_TARGET} in 10.[012]) allow_undefined_flag_GCJ='${wl}-flat_namespace ${wl}-undefined ${wl}suppress' ;; 10.*) allow_undefined_flag_GCJ='${wl}-undefined ${wl}dynamic_lookup' ;; esac fi ;; esac archive_cmds_need_lc_GCJ=no hardcode_direct_GCJ=no hardcode_automatic_GCJ=yes hardcode_shlibpath_var_GCJ=unsupported whole_archive_flag_spec_GCJ='' link_all_deplibs_GCJ=yes if test "$GCC" = yes ; then output_verbose_link_cmd='echo' archive_cmds_GCJ='$CC -dynamiclib $allow_undefined_flag -o $lib $libobjs $deplibs $compiler_flags -install_name $rpath/$soname $verstring' module_cmds_GCJ='$CC $allow_undefined_flag -o $lib -bundle $libobjs $deplibs$compiler_flags' # Don't fix this by using the ld -exported_symbols_list flag, it doesn't exist in older darwin lds archive_expsym_cmds_GCJ='sed -e "s,#.*,," -e "s,^[ ]*,," -e "s,^\(..*\),_&," < $export_symbols > $output_objdir/${libname}-symbols.expsym~$CC -dynamiclib $allow_undefined_flag -o $lib $libobjs $deplibs $compiler_flags -install_name $rpath/$soname $verstring~nmedit -s $output_objdir/${libname}-symbols.expsym ${lib}' module_expsym_cmds_GCJ='sed -e "s,#.*,," -e "s,^[ ]*,," -e "s,^\(..*\),_&," < $export_symbols > $output_objdir/${libname}-symbols.expsym~$CC $allow_undefined_flag -o $lib -bundle $libobjs $deplibs$compiler_flags~nmedit -s $output_objdir/${libname}-symbols.expsym ${lib}' else case $cc_basename in xlc*) output_verbose_link_cmd='echo' archive_cmds_GCJ='$CC -qmkshrobj $allow_undefined_flag -o $lib $libobjs $deplibs $compiler_flags ${wl}-install_name ${wl}`echo $rpath/$soname` $verstring' module_cmds_GCJ='$CC $allow_undefined_flag -o $lib -bundle $libobjs $deplibs$compiler_flags' # Don't fix this by using the ld -exported_symbols_list flag, it doesn't exist in older darwin lds archive_expsym_cmds_GCJ='sed -e "s,#.*,," -e "s,^[ ]*,," -e "s,^\(..*\),_&," < $export_symbols > $output_objdir/${libname}-symbols.expsym~$CC -qmkshrobj $allow_undefined_flag -o $lib $libobjs $deplibs $compiler_flags ${wl}-install_name ${wl}$rpath/$soname $verstring~nmedit -s $output_objdir/${libname}-symbols.expsym ${lib}' module_expsym_cmds_GCJ='sed -e "s,#.*,," -e "s,^[ ]*,," -e "s,^\(..*\),_&," < $export_symbols > $output_objdir/${libname}-symbols.expsym~$CC $allow_undefined_flag -o $lib -bundle $libobjs $deplibs$compiler_flags~nmedit -s $output_objdir/${libname}-symbols.expsym ${lib}' ;; *) ld_shlibs_GCJ=no ;; esac fi ;; dgux*) archive_cmds_GCJ='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' hardcode_libdir_flag_spec_GCJ='-L$libdir' hardcode_shlibpath_var_GCJ=no ;; freebsd1*) ld_shlibs_GCJ=no ;; # FreeBSD 2.2.[012] allows us to include c++rt0.o to get C++ constructor # support. Future versions do this automatically, but an explicit c++rt0.o # does not break anything, and helps significantly (at the cost of a little # extra space). freebsd2.2*) archive_cmds_GCJ='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags /usr/lib/c++rt0.o' hardcode_libdir_flag_spec_GCJ='-R$libdir' hardcode_direct_GCJ=yes hardcode_shlibpath_var_GCJ=no ;; # Unfortunately, older versions of FreeBSD 2 do not have this feature. freebsd2*) archive_cmds_GCJ='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' hardcode_direct_GCJ=yes hardcode_minus_L_GCJ=yes hardcode_shlibpath_var_GCJ=no ;; # FreeBSD 3 and greater uses gcc -shared to do shared libraries. freebsd* | kfreebsd*-gnu | dragonfly*) archive_cmds_GCJ='$CC -shared -o $lib $libobjs $deplibs $compiler_flags' hardcode_libdir_flag_spec_GCJ='-R$libdir' hardcode_direct_GCJ=yes hardcode_shlibpath_var_GCJ=no ;; hpux9*) if test "$GCC" = yes; then archive_cmds_GCJ='$rm $output_objdir/$soname~$CC -shared -fPIC ${wl}+b ${wl}$install_libdir -o $output_objdir/$soname $libobjs $deplibs $compiler_flags~test $output_objdir/$soname = $lib || mv $output_objdir/$soname $lib' else archive_cmds_GCJ='$rm $output_objdir/$soname~$LD -b +b $install_libdir -o $output_objdir/$soname $libobjs $deplibs $linker_flags~test $output_objdir/$soname = $lib || mv $output_objdir/$soname $lib' fi hardcode_libdir_flag_spec_GCJ='${wl}+b ${wl}$libdir' hardcode_libdir_separator_GCJ=: hardcode_direct_GCJ=yes # hardcode_minus_L: Not really in the search PATH, # but as the default location of the library. hardcode_minus_L_GCJ=yes export_dynamic_flag_spec_GCJ='${wl}-E' ;; hpux10*) if test "$GCC" = yes -a "$with_gnu_ld" = no; then archive_cmds_GCJ='$CC -shared -fPIC ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags' else archive_cmds_GCJ='$LD -b +h $soname +b $install_libdir -o $lib $libobjs $deplibs $linker_flags' fi if test "$with_gnu_ld" = no; then hardcode_libdir_flag_spec_GCJ='${wl}+b ${wl}$libdir' hardcode_libdir_separator_GCJ=: hardcode_direct_GCJ=yes export_dynamic_flag_spec_GCJ='${wl}-E' # hardcode_minus_L: Not really in the search PATH, # but as the default location of the library. hardcode_minus_L_GCJ=yes fi ;; hpux11*) if test "$GCC" = yes -a "$with_gnu_ld" = no; then case $host_cpu in hppa*64*) archive_cmds_GCJ='$CC -shared ${wl}+h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags' ;; ia64*) archive_cmds_GCJ='$CC -shared ${wl}+h ${wl}$soname ${wl}+nodefaultrpath -o $lib $libobjs $deplibs $compiler_flags' ;; *) archive_cmds_GCJ='$CC -shared -fPIC ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags' ;; esac else case $host_cpu in hppa*64*) archive_cmds_GCJ='$CC -b ${wl}+h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags' ;; ia64*) archive_cmds_GCJ='$CC -b ${wl}+h ${wl}$soname ${wl}+nodefaultrpath -o $lib $libobjs $deplibs $compiler_flags' ;; *) archive_cmds_GCJ='$CC -b ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags' ;; esac fi if test "$with_gnu_ld" = no; then hardcode_libdir_flag_spec_GCJ='${wl}+b ${wl}$libdir' hardcode_libdir_separator_GCJ=: case $host_cpu in hppa*64*|ia64*) hardcode_libdir_flag_spec_ld_GCJ='+b $libdir' hardcode_direct_GCJ=no hardcode_shlibpath_var_GCJ=no ;; *) hardcode_direct_GCJ=yes export_dynamic_flag_spec_GCJ='${wl}-E' # hardcode_minus_L: Not really in the search PATH, # but as the default location of the library. hardcode_minus_L_GCJ=yes ;; esac fi ;; irix5* | irix6* | nonstopux*) if test "$GCC" = yes; then archive_cmds_GCJ='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && echo ${wl}-set_version ${wl}$verstring` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib' else archive_cmds_GCJ='$LD -shared $libobjs $deplibs $linker_flags -soname $soname `test -n "$verstring" && echo -set_version $verstring` -update_registry ${output_objdir}/so_locations -o $lib' hardcode_libdir_flag_spec_ld_GCJ='-rpath $libdir' fi hardcode_libdir_flag_spec_GCJ='${wl}-rpath ${wl}$libdir' hardcode_libdir_separator_GCJ=: link_all_deplibs_GCJ=yes ;; netbsd*) if echo __ELF__ | $CC -E - | grep __ELF__ >/dev/null; then archive_cmds_GCJ='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' # a.out else archive_cmds_GCJ='$LD -shared -o $lib $libobjs $deplibs $linker_flags' # ELF fi hardcode_libdir_flag_spec_GCJ='-R$libdir' hardcode_direct_GCJ=yes hardcode_shlibpath_var_GCJ=no ;; newsos6) archive_cmds_GCJ='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' hardcode_direct_GCJ=yes hardcode_libdir_flag_spec_GCJ='${wl}-rpath ${wl}$libdir' hardcode_libdir_separator_GCJ=: hardcode_shlibpath_var_GCJ=no ;; openbsd*) hardcode_direct_GCJ=yes hardcode_shlibpath_var_GCJ=no if test -z "`echo __ELF__ | $CC -E - | grep __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then archive_cmds_GCJ='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags' archive_expsym_cmds_GCJ='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags ${wl}-retain-symbols-file,$export_symbols' hardcode_libdir_flag_spec_GCJ='${wl}-rpath,$libdir' export_dynamic_flag_spec_GCJ='${wl}-E' else case $host_os in openbsd[01].* | openbsd2.[0-7] | openbsd2.[0-7].*) archive_cmds_GCJ='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' hardcode_libdir_flag_spec_GCJ='-R$libdir' ;; *) archive_cmds_GCJ='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags' hardcode_libdir_flag_spec_GCJ='${wl}-rpath,$libdir' ;; esac fi ;; os2*) hardcode_libdir_flag_spec_GCJ='-L$libdir' hardcode_minus_L_GCJ=yes allow_undefined_flag_GCJ=unsupported archive_cmds_GCJ='$echo "LIBRARY $libname INITINSTANCE" > $output_objdir/$libname.def~$echo "DESCRIPTION \"$libname\"" >> $output_objdir/$libname.def~$echo DATA >> $output_objdir/$libname.def~$echo " SINGLE NONSHARED" >> $output_objdir/$libname.def~$echo EXPORTS >> $output_objdir/$libname.def~emxexp $libobjs >> $output_objdir/$libname.def~$CC -Zdll -Zcrtdll -o $lib $libobjs $deplibs $compiler_flags $output_objdir/$libname.def' old_archive_From_new_cmds_GCJ='emximp -o $output_objdir/$libname.a $output_objdir/$libname.def' ;; osf3*) if test "$GCC" = yes; then allow_undefined_flag_GCJ=' ${wl}-expect_unresolved ${wl}\*' archive_cmds_GCJ='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && echo ${wl}-set_version ${wl}$verstring` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib' else allow_undefined_flag_GCJ=' -expect_unresolved \*' archive_cmds_GCJ='$LD -shared${allow_undefined_flag} $libobjs $deplibs $linker_flags -soname $soname `test -n "$verstring" && echo -set_version $verstring` -update_registry ${output_objdir}/so_locations -o $lib' fi hardcode_libdir_flag_spec_GCJ='${wl}-rpath ${wl}$libdir' hardcode_libdir_separator_GCJ=: ;; osf4* | osf5*) # as osf3* with the addition of -msym flag if test "$GCC" = yes; then allow_undefined_flag_GCJ=' ${wl}-expect_unresolved ${wl}\*' archive_cmds_GCJ='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags ${wl}-msym ${wl}-soname ${wl}$soname `test -n "$verstring" && echo ${wl}-set_version ${wl}$verstring` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib' hardcode_libdir_flag_spec_GCJ='${wl}-rpath ${wl}$libdir' else allow_undefined_flag_GCJ=' -expect_unresolved \*' archive_cmds_GCJ='$LD -shared${allow_undefined_flag} $libobjs $deplibs $linker_flags -msym -soname $soname `test -n "$verstring" && echo -set_version $verstring` -update_registry ${output_objdir}/so_locations -o $lib' archive_expsym_cmds_GCJ='for i in `cat $export_symbols`; do printf "%s %s\\n" -exported_symbol "\$i" >> $lib.exp; done; echo "-hidden">> $lib.exp~ $LD -shared${allow_undefined_flag} -input $lib.exp $linker_flags $libobjs $deplibs -soname $soname `test -n "$verstring" && echo -set_version $verstring` -update_registry ${output_objdir}/so_locations -o $lib~$rm $lib.exp' # Both c and cxx compiler support -rpath directly hardcode_libdir_flag_spec_GCJ='-rpath $libdir' fi hardcode_libdir_separator_GCJ=: ;; solaris*) no_undefined_flag_GCJ=' -z text' if test "$GCC" = yes; then wlarc='${wl}' archive_cmds_GCJ='$CC -shared ${wl}-h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags' archive_expsym_cmds_GCJ='$echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~$echo "local: *; };" >> $lib.exp~ $CC -shared ${wl}-M ${wl}$lib.exp ${wl}-h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags~$rm $lib.exp' else wlarc='' archive_cmds_GCJ='$LD -G${allow_undefined_flag} -h $soname -o $lib $libobjs $deplibs $linker_flags' archive_expsym_cmds_GCJ='$echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~$echo "local: *; };" >> $lib.exp~ $LD -G${allow_undefined_flag} -M $lib.exp -h $soname -o $lib $libobjs $deplibs $linker_flags~$rm $lib.exp' fi hardcode_libdir_flag_spec_GCJ='-R$libdir' hardcode_shlibpath_var_GCJ=no case $host_os in solaris2.[0-5] | solaris2.[0-5].*) ;; *) # The compiler driver will combine linker options so we # cannot just pass the convience library names through # without $wl, iff we do not link with $LD. # Luckily, gcc supports the same syntax we need for Sun Studio. # Supported since Solaris 2.6 (maybe 2.5.1?) case $wlarc in '') whole_archive_flag_spec_GCJ='-z allextract$convenience -z defaultextract' ;; *) whole_archive_flag_spec_GCJ='${wl}-z ${wl}allextract`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $echo \"$new_convenience\"` ${wl}-z ${wl}defaultextract' ;; esac ;; esac link_all_deplibs_GCJ=yes ;; sunos4*) if test "x$host_vendor" = xsequent; then # Use $CC to link under sequent, because it throws in some extra .o # files that make .init and .fini sections work. archive_cmds_GCJ='$CC -G ${wl}-h $soname -o $lib $libobjs $deplibs $compiler_flags' else archive_cmds_GCJ='$LD -assert pure-text -Bstatic -o $lib $libobjs $deplibs $linker_flags' fi hardcode_libdir_flag_spec_GCJ='-L$libdir' hardcode_direct_GCJ=yes hardcode_minus_L_GCJ=yes hardcode_shlibpath_var_GCJ=no ;; sysv4) case $host_vendor in sni) archive_cmds_GCJ='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' hardcode_direct_GCJ=yes # is this really true??? ;; siemens) ## LD is ld it makes a PLAMLIB ## CC just makes a GrossModule. archive_cmds_GCJ='$LD -G -o $lib $libobjs $deplibs $linker_flags' reload_cmds_GCJ='$CC -r -o $output$reload_objs' hardcode_direct_GCJ=no ;; motorola) archive_cmds_GCJ='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' hardcode_direct_GCJ=no #Motorola manual says yes, but my tests say they lie ;; esac runpath_var='LD_RUN_PATH' hardcode_shlibpath_var_GCJ=no ;; sysv4.3*) archive_cmds_GCJ='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' hardcode_shlibpath_var_GCJ=no export_dynamic_flag_spec_GCJ='-Bexport' ;; sysv4*MP*) if test -d /usr/nec; then archive_cmds_GCJ='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' hardcode_shlibpath_var_GCJ=no runpath_var=LD_RUN_PATH hardcode_runpath_var=yes ld_shlibs_GCJ=yes fi ;; sysv4*uw2* | sysv5OpenUNIX* | sysv5UnixWare7.[01].[10]* | unixware7*) no_undefined_flag_GCJ='${wl}-z,text' archive_cmds_need_lc_GCJ=no hardcode_shlibpath_var_GCJ=no runpath_var='LD_RUN_PATH' if test "$GCC" = yes; then archive_cmds_GCJ='$CC -shared ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags' archive_expsym_cmds_GCJ='$CC -shared ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags' else archive_cmds_GCJ='$CC -G ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags' archive_expsym_cmds_GCJ='$CC -G ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags' fi ;; sysv5* | sco3.2v5* | sco5v6*) # Note: We can NOT use -z defs as we might desire, because we do not # link with -lc, and that would cause any symbols used from libc to # always be unresolved, which means just about no library would # ever link correctly. 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The import file would start with # the line `#! .'. This would cause the generated library to # depend on `.', always an invalid library. This was fixed in # development snapshots of GCC prior to 3.0. case $host_os in aix4 | aix4.[01] | aix4.[01].*) if { echo '#if __GNUC__ > 2 || (__GNUC__ == 2 && __GNUC_MINOR__ >= 97)' echo ' yes ' echo '#endif'; } | ${CC} -E - | grep yes > /dev/null; then : else can_build_shared=no fi ;; esac # AIX (on Power*) has no versioning support, so currently we can not hardcode correct # soname into executable. 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echo "$as_me:$LINENO: checking fitsio.h usability" >&5 echo $ECHO_N "checking fitsio.h usability... $ECHO_C" >&6 cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF cat confdefs.h >>conftest.$ac_ext cat >>conftest.$ac_ext <<_ACEOF /* end confdefs.h. */ $ac_includes_default #include _ACEOF rm -f conftest.$ac_objext if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5 (eval $ac_compile) 2>conftest.er1 ac_status=$? grep -v '^ *+' conftest.er1 >conftest.err rm -f conftest.er1 cat conftest.err >&5 echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); } && { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; } && { ac_try='test -s conftest.$ac_objext' { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 (eval $ac_try) 2>&5 ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; }; then ac_header_compiler=yes else echo "$as_me: failed program was:" >&5 sed 's/^/| /' conftest.$ac_ext >&5 ac_header_compiler=no fi rm -f conftest.err conftest.$ac_objext conftest.$ac_ext echo "$as_me:$LINENO: result: $ac_header_compiler" >&5 echo "${ECHO_T}$ac_header_compiler" >&6 # Is the header present? 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" >&6 CCfits/AsciiTable.cxx0000644000225700000360000002563311470265344014262 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifdef _MSC_VER #include "MSconfig.h" // for truncation warning #endif // ColumnCreator #include "ColumnCreator.h" // Column #include "Column.h" // AsciiTable #include "AsciiTable.h" #ifdef SSTREAM_DEFECT #include #else #include #endif namespace CCfits { // Class CCfits::AsciiTable AsciiTable::AsciiTable(const AsciiTable &right) : Table(right) { } AsciiTable::AsciiTable (FITSBase* p, const String &hduName, bool readFlag, const std::vector& keys, int version) : Table(p, AsciiTbl,hduName,version) { init(readFlag,keys); } AsciiTable::AsciiTable (FITSBase* p, const String &hduName, int rows, const std::vector& columnName, const std::vector& columnFmt, const std::vector& columnUnit, int version) : Table(p, AsciiTbl , hduName, rows, columnName, columnFmt, columnUnit, version) { long width=0; int decimals=0; int status=0; int colType=0; ColumnCreator create(this); for (int i=0; i< numCols(); i++) { status = fits_ascii_tform(const_cast(columnFmt[i].c_str()), &colType, &width, &decimals, &status); if (status != 0) throw FitsError(status); setColumn(columnName[i],create.createColumn(i+1,ValueType(colType), columnName[i], columnFmt[i], columnUnit[i],1,width)); column(columnName[i]).setLimits(ValueType(colType)); } } AsciiTable::AsciiTable (FITSBase* p, int number) : Table(p,AsciiTbl,number) { init(); } AsciiTable::~AsciiTable() { } void AsciiTable::readTableHeader (int ncols, std::vector& colName, std::vector& colFmt, std::vector& colUnit) { long rowlen=0; long *tbcol = new long[ncols]; int status=0; // hduName has already been set in ExtHDU so it is allocated and // read here only because cfitsio requires it. char hduName[FLEN_KEYWORD]; char** columnName = new char*[ncols]; char** columnFmt = new char*[ncols]; char** columnUnit = new char*[ncols]; int i = 0; // for MS VC++ for(; i < ncols; i++) { columnName[i] = new char[FLEN_KEYWORD]; columnFmt[i] = new char[FLEN_KEYWORD]; columnUnit[i] = new char[FLEN_KEYWORD]; } long nRows = 0; int fields = 0; status = fits_read_atblhdr(fitsPointer(), ncols, &rowlen, &nRows, &fields, columnName, tbcol, columnFmt, columnUnit, hduName, &status); rows(nRows); numCols(fields); for( i = 0; i < ncols; i++) { colName[i] = String(columnName[i]); colFmt[i] = String(columnFmt[i]); colUnit[i] = String(columnUnit[i]); delete [] columnName[i]; delete [] columnFmt[i]; delete [] columnUnit[i]; } delete [] columnName; delete [] columnFmt; delete [] columnUnit; if (status != 0) throw FitsError(status); delete [] tbcol; } AsciiTable * AsciiTable::clone (FITSBase* p) const { AsciiTable* cloned = new AsciiTable(*this); cloned->parent() = p; return cloned; } void AsciiTable::readData (bool readFlag, const std::vector& keys) { int rowsRead=0; int status = 0; long rowSize = 0; // grab the optimal rowsize using the get_rowsize call. It just // might have changed since the Table HDU was constructed so it should // be set just before reading takes place. if (fits_get_rowsize(fitsPointer(), &rowSize, &status)) throw FitsError(status); size_t keysRead = 0; size_t nkey=keys.size(); std::map::iterator endColumn = column().end(); // if a set of strings were supplied, interpret these as // keywords and columns to be read. // get a container for keys which correspond to columns. std::vector colKeys; colKeys.reserve(nkey); if (nkey > 0) { for (keysRead = 0; keysRead < nkey; keysRead++) { try { // after the read function is called by the ctor, // the columns in the table have been indexed. // check that the key in question is not a column // name. if (column().find(keys[keysRead]) == endColumn) readKeyword(keys[keysRead]); else colKeys.push_back(keys[keysRead]); } catch (HDU::NoSuchKeyword) { continue; } catch (...) { throw; } } } // if readFlag is false, don't get any data. if (!readFlag) return; // the data consist of scalars in each row. For an ASCII table, // rowSize is probably quite big because there's just one element per row. for (rowsRead=0; rowsRead< rows() ; rowsRead+=rowSize) { std::map::iterator col; if (colKeys.size() > 0) { for (size_t i=0; i < colKeys.size() ; i++) { // if a set of keys was entered, read the data in the ones // that correspond to columns, as checked earlier col = column().find(colKeys[i]); Column& current = *((*col).second); current.readData(rowsRead+1, current.repeat()*std::min(rowSize,rows()-rowsRead),1); } } else { // if no keys that correspond to column names were supplied, read all the data. for(col = column().begin(); col != column().end(); col++ ) { Column& current = *((*col).second); current.readData(rowsRead+1, current.repeat()*std::min(rowSize,rows() - rowsRead),1); } } } if (colKeys.size() == 0) { // mark all columns read for (std::map::iterator col = column().begin(); col != column().end(); ++col) { (*col).second->isRead(true); } } else { for (size_t i=0; i < colKeys.size() ; i++) { // if a set of keys was entered, read the data in the ones // that correspond to columns, as checked earlier std::map::iterator col = column().find(colKeys[i]); (*col).second->isRead(true); } } } void AsciiTable::addColumn (ValueType type, const String& columnName, long repeatWidth, const String& colUnit, long decimals, size_t columnNumber) { String diag(""); // repeatWidth has the following semantics: // for non-string represents the multiplicity of entries in the column cell, and // is therefore always 1 for numeric datatypes. // for strings it represents the string width. // In cfitsio, the information about datatypes is carried in the width field, // but here this is carried by the type value. if (type < 0 ) { diag += " writing vector-valued column to ASCII table: "; diag += name(); // name of ascii table extension throw InvalidColumnSpecification(diag); } if (Tstring && repeatWidth < 1) { diag += " length of string values unspecified for Column: "; diag += columnName; throw InvalidColumnSpecification(diag); } if ( ( type == Tfloat || type == Tdouble ) ) { if ( decimals < 0 || decimals > repeatWidth ) { diag += " invalid specification for floating point data format in Column " ; diag += columnName; throw InvalidColumnSpecification(diag); } } #ifdef SSTREAM_DEFECT std::ostrstream tformStr; #else std::ostringstream tformStr; #endif switch (type) { case Tstring: tformStr << 'A' << repeatWidth; break; case Tshort: case Tint: tformStr << 'I' << 6; break; case Tlong: tformStr << 'I' << 12; break; case Tfloat: if (repeatWidth <= 7) { tformStr << 'E' << repeatWidth << '.' << decimals; } else { tformStr << 'D' << repeatWidth << '.' << decimals; } break; case Tdouble: tformStr << 'D' << repeatWidth << '.' << decimals; break; default: diag += "Invalid data type for ASCII table "; diag += name(); throw WrongExtensionType(diag); } # ifdef SSTREAM_DEFECT tformStr << std::ends; # endif makeThisCurrent(); // the user is allowed to specify which column number to create although // this is frowned down upon because the user shouldn't care how the data // are written internally. int colNum(0); int status(0); if ( columnNumber == 0) { if (fits_get_num_cols(fitsPointer(),&colNum,&status)) throw FitsError(status); colNum +=1; } else colNum = columnNumber; //string ColumnName(FITSUtil::upperCase(columnName)); String tfString(tformStr.str()); char* tform = const_cast(tfString.c_str()); char* ttype = const_cast(columnName.c_str()); if (fits_insert_col(fitsPointer(),colNum,ttype,tform,&status)) throw FitsError(status); if (colUnit.size()) { std::ostringstream ustream; char unitComment[] = ""; ustream << "TUNIT" << colNum; if (fits_write_key (fitsPointer(), Tstring, const_cast(ustream.str().c_str()), const_cast(colUnit.c_str()), unitComment, &status)) { throw FitsError (status); } } ColumnCreator create(this); setColumn(columnName,create.createColumn(colNum,type,columnName,tfString, colUnit,1,repeatWidth)); if (type != Tstring) column(columnName).setLimits(type); if (columnNumber != 0) reindex(); } // Additional Declarations } // namespace CCfits CCfits/BinTable.cxx0000644000225700000360000003214611656032112013726 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman // ColumnCreator #include "ColumnCreator.h" // Column #include "Column.h" // BinTable #include "BinTable.h" #ifdef SSTREAM_DEFECT #include #else #include #endif namespace CCfits { // Class CCfits::BinTable BinTable::BinTable(const BinTable &right) : Table(right) { } BinTable::BinTable (FITSBase* p, const String &hduName, bool readFlag, const std::vector& keys, int version) : Table(p, BinaryTbl, hduName, version) { init(readFlag,keys); } BinTable::BinTable (FITSBase* p, const String &hduName, int rows, const std::vector& columnName, const std::vector& columnFmt, const std::vector& columnUnit, int version) : Table(p, BinaryTbl, hduName, rows, columnName, columnFmt, columnUnit, version) { long repeat=0; long width=0; int status=0; int colType=0; ColumnCreator create(this); for (int i=0; i < numCols(); i++) { status = fits_binary_tform(const_cast(columnFmt[i].c_str()), &colType, &repeat, &width, &status); string unitString(""); if (i < columnUnit.size()) unitString = columnUnit[i]; setColumn(columnName[i],create.createColumn(i+1, ValueType(colType), columnName[i], columnFmt[i], unitString,repeat,width)); column(columnName[i]).setLimits(ValueType(colType)); } } BinTable::BinTable (FITSBase* p, int number) : Table(p,BinaryTbl,number) { init(); } BinTable::~BinTable() { } void BinTable::readTableHeader (int ncols, std::vector& colName, std::vector& colFmt, std::vector& colUnit) { int status=0; char hduName[FLEN_KEYWORD]; char** columnName = new char*[ncols]; char** columnFmt = new char*[ncols]; char** columnUnit = new char*[ncols]; int i = 0; // for MS VC++ for( ; i < ncols; i++) { columnName[i] = new char[FLEN_KEYWORD]; columnFmt[i] = new char[FLEN_KEYWORD]; columnUnit[i] = new char[FLEN_KEYWORD]; } long pct = 0; long nr = 0; int tf = 0; status = fits_read_btblhdr(fitsPointer(), ncols, &nr, &tf, columnName, columnFmt, columnUnit, hduName, &pct,&status); pcount(pct); rows(nr); numCols(tf); for( i = 0; i < ncols; i++) { colName[i] = String(columnName[i]); colFmt[i] = String(columnFmt[i]); colUnit[i] = String(columnUnit[i]); delete [] columnName[i]; delete [] columnFmt[i]; delete [] columnUnit[i]; } delete [] columnName; delete [] columnFmt; delete [] columnUnit; // throw the exception after the garbage has been collected. if (status != 0) throw FitsError(status); } BinTable * BinTable::clone (FITSBase* p) const { BinTable* cloned = new BinTable(*this); cloned->parent() = p; return cloned; } void BinTable::readData (bool readFlag, const std::vector& keys) { int rowsRead=0; std::vector varCols; int status = 0; long rowSize = 0; // grab the optimal rowsize using the get_rowsize call. It just // might have changed since the Table HDU was constructed so it should // be set just before reading takes place. if (fits_get_rowsize(fitsPointer(), &rowSize, &status)) throw FitsError(status); // if a set of strings were supplied, interpret these as // keywords and columns to be read. std::map::iterator endColumn = column().end(); size_t keysRead = 0; size_t nkey=keys.size(); // get a container for keys which correspond to columns. std::vector colKeys; colKeys.reserve(nkey); if (nkey > 0) { // first, look for keywords if strings are supplied and read them. for (keysRead = 0; keysRead < nkey; keysRead++) { try { // after the read function is called by the ctor, // the columns in the table have been indexed. // check that the key in question is not a column // name. if (column().find(keys[keysRead]) == endColumn) readKeyword(keys[keysRead]); else colKeys.push_back(keys[keysRead]); } catch (HDU::NoSuchKeyword) { continue; } catch (...) { throw; } } } // if readFlag is false, don't get any data. if (!readFlag) return; for (rowsRead=0; rowsRead< rows() ; rowsRead+=rowSize) { std::map::iterator col; if (colKeys.size() > 0) { for (size_t i=0; i < colKeys.size() ; i++) { // if a set of keys was entered, read the data in the ones // that correspond to columns, as checked earlier col = column().find(colKeys[i]); Column& current = *((*col).second); // if the column is not of variable repeat count... if (!current.varLength()) { current.readData(rowsRead+1, current.repeat()*std::min(rowSize,rows()-rowsRead),1); } else { // store the column numbers of variable columns for later. varCols.push_back(current.name()); } } } else { // if no keys that correspond to column names were supplied, read all the data. for(col = column().begin(); col != column().end(); col++ ) { Column& current = *(*col).second; if (!current.varLength()) { current.readData(rowsRead+1, current.repeat()*std::min(rowSize,rows() - rowsRead),1); } else { varCols.push_back(current.name()); } } } } // if successful, mark read columns. if (colKeys.size() == 0) { // mark all columns read for (std::map::iterator col = column().begin(); col != column().end(); ++col) { if (!(*col).second->varLength()) (*col).second->isRead(true); } } else { for (size_t i=0; i < colKeys.size() ; i++) { // if a set of keys was entered, read the data in the ones // that correspond to columns, as checked earlier. std::map::iterator col = column().find(colKeys[i]); if (!(*col).second->varLength()) (*col).second->isRead(true); } } // now read the variable length columns that were found earlier. if (varCols.size() > 0 ) readVariableColumns(varCols); } void BinTable::readVariableColumns (const std::vector &varColumns) { int rowsRead=0; int status=0; int sz=varColumns.size(); int i = 0; FITSUtil::auto_array_ptr pBinSizes(new long[rows()]); long* binSizes = pBinSizes.get(); FITSUtil::auto_array_ptr pOffsets(new long[rows()]); long* offsets = pOffsets.get(); while ( i < sz && status == 0 ) { // Get bin size for the current column Column& thisColumn = column(varColumns[i]); int colnum = thisColumn.index(); status = fits_read_descripts(fitsPointer(), colnum, 1, rows() , binSizes, offsets, &status); if (status != 0) break; for (rowsRead=0; rowsRead < rows() ; rowsRead++) { if (binSizes[rowsRead] > 0) thisColumn.readData(rowsRead+1, binSizes[rowsRead], 1); } column(varColumns[i]).isRead(true); i++; } if (status != 0) throw FitsError(status); } void BinTable::addColumn (ValueType type, const String& columnName, long repeatWidth, const String& colUnit, long decimals, size_t columnNumber) { #ifdef SSTREAM_DEFECT std::ostrstream tformStr; #else std::ostringstream tformStr; #endif // we do NOT support the extension allowed by cfitsio whereby multiple // strings can be saved in a binary table column cell. String diag(""); if ( repeatWidth != 1 && type != Tstring) { tformStr << repeatWidth; } // this is safe since there's no VTstring type. if (type < 0) tformStr << 'P'; switch (type) { case Tstring: tformStr << repeatWidth << 'A'; break; case Tbyte: case VTbyte: tformStr << 'B'; break; case Tbit: case VTbit: tformStr << 'X'; break; case Tlogical: case VTlogical: tformStr << 'L'; break; case Tushort: case VTushort: tformStr << 'U'; break; case Tshort: case VTshort: tformStr << 'I'; break; case Tulong: case VTulong: tformStr << 'V'; break; case Tlong: case VTlong: tformStr << 'J'; break; case Tlonglong: case VTlonglong: tformStr << 'K'; break; case Tuint: case VTuint: tformStr << 'V'; break; case Tint: case VTint: tformStr << 'J'; break; case Tfloat: case VTfloat: tformStr << 'E'; break; case Tdouble: case VTdouble: tformStr << 'D'; break; case Tcomplex: case VTcomplex: tformStr << 'C'; break; case Tdblcomplex: case VTdblcomplex: tformStr << 'M'; break; default: diag += "Unrecognized data type for column: "; diag += columnName; throw InvalidColumnSpecification(diag); } #ifdef SSTREAM_DEFECT tformStr << std::ends; #endif makeThisCurrent(); int status(0); int colNum(0); if ( columnNumber == 0) { // add one to number of existing columns. if (fits_get_num_cols(fitsPointer(),&colNum,&status)) throw FitsError(status); colNum +=1; } else { colNum = columnNumber; } String tfString(tformStr.str()); // the C prototypes don't use const, so these casts are necessary. char* tform = const_cast(tfString.c_str()); char* ttype = const_cast(columnName.c_str()); if (fits_insert_col(fitsPointer(),colNum,ttype,tform,&status)) throw FitsError(status); if (colUnit.size()) { std::ostringstream ustream; char unitComment[] = ""; ustream << "TUNIT" << colNum; if (fits_write_key (fitsPointer(), Tstring, const_cast(ustream.str().c_str()), const_cast(colUnit.c_str()), unitComment, &status)) { throw FitsError (status); } } ColumnCreator create(this); if (type != Tstring) { setColumn(columnName,create.createColumn(colNum,type,columnName,tfString, colUnit,repeatWidth,1)); column(columnName).setLimits(type); } else { setColumn(columnName,create.createColumn(colNum,type,columnName,tfString, colUnit,1,repeatWidth)); } if (columnNumber != 0) reindex(); } // Additional Declarations } // namespace CCfits CCfits/Column.cxx0000644000225700000360000015772611471036043013521 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifdef _MSC_VER #include "MSconfig.h" // for truncation warning #endif #ifdef HAVE_CONFIG_H #include "config.h" #endif #ifdef SSTREAM_DEFECT #include using std::ostrstream; #else #include using std::ostringstream; #endif // Table #include "Table.h" // Column #include "Column.h" #include "FITS.h" #include "fitsio.h" #include "ColumnData.h" #include "ColumnVectorData.h" #include #include #include namespace CCfits { // Class CCfits::Column::RangeError Column::RangeError::RangeError (const String& msg, bool silent) : FitsException("FitsError: Range error in operation ",silent) { addToMessage(msg); if (!silent || FITS::verboseMode() ) std::cerr << msg << '\n'; } // Class CCfits::Column::InvalidDataType Column::InvalidDataType::InvalidDataType (const String& str, bool silent) : FitsException("FitsError: Incorrect data type: ",silent) { addToMessage(str); if (!silent || FITS::verboseMode() ) std::cerr << str << '\n'; } // Class CCfits::Column::InvalidRowParameter Column::InvalidRowParameter::InvalidRowParameter (const String& diag, bool silent) : FitsException("FitsError: row offset or length incompatible with column declaration ",silent) { addToMessage(diag); if (!silent || FITS::verboseMode() ) std::cerr << diag << '\n'; } // Class CCfits::Column::WrongColumnType Column::WrongColumnType::WrongColumnType (const String& diag, bool silent) : FitsException("FitsError: Attempt to return scalar data from vector column, or vice versa - Column: ",silent) { addToMessage(diag); if (!silent || FITS::verboseMode() ) std::cerr << diag << '\n'; } // Class CCfits::Column::UnspecifiedLengths Column::UnspecifiedLengths::UnspecifiedLengths (const String& diag, bool silent) : FitsException ("FitsError: Variable length column being written needs integer array of row lengths: Column ",silent) { addToMessage(diag); if (!silent || FITS::verboseMode() ) std::cerr << diag << '\n'; } // Class CCfits::Column::InvalidRowNumber Column::InvalidRowNumber::InvalidRowNumber (const String& diag, bool silent) : FitsException("FitsError: Invalid Row Number - Column: ",silent) { addToMessage(diag); if (!silent || FITS::verboseMode() ) std::cerr << diag << '\n'; } // Class CCfits::Column::InsufficientElements Column::InsufficientElements::InsufficientElements (const String& msg, bool silent) : FitsException("FitsError: not enough elements supplied for write operation ",silent) { addToMessage(msg); if (!silent || FITS::verboseMode() ) std::cerr << msg << '\n'; } // Class CCfits::Column::NoNullValue Column::NoNullValue::NoNullValue (const String& diag, bool silent) : FitsException("Fits Error: No null value specified for column: ",silent) { addToMessage(diag); if (!silent || FITS::verboseMode() ) std::cerr << diag << '\n'; } // Class CCfits::Column::InvalidNumberOfRows Column::InvalidNumberOfRows::InvalidNumberOfRows (size_t number, bool silent) : FitsException( "Fits Error: number of rows to write must be positive: ",silent) { std::ostringstream oss; oss << " specified: " << number; addToMessage(oss.str()); if (!silent || FITS::verboseMode() ) std::cerr << oss.str() << '\n'; } // Class CCfits::Column const String Column::s_TBCOL = "TBCOL"; const String Column::s_TTYPE = "TTYPE"; const String Column::s_TFORM = "TFORM"; const String Column::s_TDISP = "TDISP"; const String Column::s_TUNIT = "TUNIT"; const String Column::s_TSCAL = "TSCAL"; const String Column::s_TZERO = "TZERO"; const String Column::s_TDIM = "TDIM"; const String Column::s_TNULL = "TNULL"; const String Column::s_TLMIN = "TLMIN"; const String Column::s_TLMAX = "TLMAX"; const String Column::s_TDMAX = "TDMAX"; const String Column::s_TDMIN = "TDMIN"; const short Column::LLIMITSHORT = SHRT_MIN; const long Column::LLIMITLONG = LONG_MIN; const unsigned short Column::LLIMITUSHORT = 0; const unsigned long Column::LLIMITULONG = 0; const unsigned char Column::LLIMITUCHAR = 0; const float Column::LLIMITFLOAT = FLT_MIN; const double Column::LLIMITDOUBLE = DBL_MIN; const short Column::ULIMITSHORT = SHRT_MAX; const long Column::ULIMITLONG = LONG_MAX; const unsigned short Column::ULIMITUSHORT = USHRT_MAX; const unsigned long Column::ULIMITULONG = ULONG_MAX; const unsigned char Column::ULIMITUCHAR = UCHAR_MAX; const float Column::ULIMITFLOAT = FLT_MAX; const double Column::ULIMITDOUBLE = DBL_MAX; const int Column::LLIMITINT = INT_MIN; const int Column::ULIMITINT = INT_MAX; const unsigned int Column::LLIMITUINT = 0; const unsigned int Column::ULIMITUINT = UINT_MAX; const LONGLONG Column::LLIMITLONGLONG = LONGLONG_MIN; const LONGLONG Column::ULIMITLONGLONG = LONGLONG_MAX; std::vector Column::s_columnKeys; Column::Column(const Column &right) : m_index(right.m_index), m_isRead(right.m_isRead), m_width(right.m_width), m_repeat(right.m_repeat), m_varLength(right.m_varLength), m_scale(right.m_scale), m_zero(right.m_zero), m_display(right.m_display), m_dimen(right.m_dimen), m_type(right.m_type), m_parent(right.m_parent), m_comment(right.m_comment), m_format(right.m_format), m_unit(right.m_unit), m_name(right.m_name) { } Column::Column (int columnIndex, const String &columnName, ValueType type, const String &format, const String &unit, Table* p, int rpt, long w, const String &comment) :m_index(columnIndex), m_isRead(false), m_width(w), m_repeat(rpt), m_varLength(type < 0), m_scale(1), m_zero(0), m_display(""), m_dimen(""), m_type(type), m_parent(p), m_comment(comment), m_format(format), m_unit(unit), m_name(columnName) { Column::loadColumnKeys(); setDisplay(); setDimen(); } Column::Column (Table* p) : m_index(-1), m_isRead(false), m_width(1), m_repeat(1), m_varLength(false), m_scale(1), m_zero(0), m_display(""), m_dimen(""), m_type(Tnull), m_parent(p), m_comment(""), m_format(""), m_unit(""), m_name("") { // default constructor. Column::loadColumnKeys(); } Column::~Column() { } bool Column::operator==(const Column &right) const { return compare(right); } bool Column::operator!=(const Column &right) const { return !compare(right); } bool Column::compare (const Column &right) const { if (m_isRead != right.m_isRead) return false; if (m_repeat != right.m_repeat) return false; if (m_width != right.m_width) return false; if (m_varLength != right.m_varLength) return false; if (m_name != right.m_name) return false; if (m_format != right.m_format) return false; if (m_unit != right.m_unit) return false; if (m_comment != right.m_comment) return false; if (m_parent != right.m_parent) return false; return true; } fitsfile* Column::fitsPointer () { return m_parent->fitsPointer(); } void Column::makeHDUCurrent () { m_parent->makeThisCurrent(); } int Column::rows () const { return m_parent->rows(); } void Column::setDisplay () { #ifdef SSTREAM_DEFECT ostrstream key; #else std::ostringstream key; #endif key << "TDISP" << index(); int status = 0; FITSUtil::auto_array_ptr dispValue (new char[FLEN_VALUE]); #ifdef SSTREAM_DEFECT key << std::ends; fits_read_key_str(fitsPointer(), key.str(), dispValue.get(),0,&status); #else fits_read_key_str(fitsPointer(),const_cast(key.str().c_str()),dispValue.get(),0,&status); #endif if (status == 0) { m_display = String(dispValue.get()); } } std::ostream& Column::put (std::ostream& s) const { { s << "Column Name:" << name() << " Number: " << index() << " unit: " << unit() << "\n"; s << "format: " << format() << " comment: " << comment() << "\n"; } return s; } Table* Column::parent () const { return m_parent; } void Column::setLimits (ValueType type) { int status(0); static long* pl = new long[4]; static LONGLONG* pll = new LONGLONG[4]; static unsigned long* pul = new unsigned long[4]; static int* pi = new int[4]; static unsigned int* pui = new unsigned int[4]; static short* ps = new short[4]; static unsigned short* pus = new unsigned short[4]; static unsigned char* puc = new unsigned char[4]; static float* pf = new float[4]; static double* pd = new double[4]; static std::complex cf[4]; static std::complex cd[4]; #ifdef SSTREAM_DEFECT ostrstream slmin; ostrstream slmax; ostrstream sdmin; ostrstream sdmax; #else ostringstream slmin; ostringstream slmax; ostringstream sdmin; ostringstream sdmax; #endif slmin << s_TLMIN << m_index; slmax << s_TLMAX << m_index; sdmin << s_TDMIN << m_index; sdmax << s_TDMAX << m_index; #ifdef SSTREAM_DEFECT slmin << std::ends; slmax << std::ends; sdmin << std::ends; sdmax << std::ends; char* lmin(slmin.str()); char* lmax(slmax.str()); char* dmin(slmin.str()); char* dmax(slmax.str()); #else String slminStr(slmin.str()); String slmaxStr(slmax.str()); String sdminStr(sdmin.str()); String sdmaxStr(sdmax.str()); char* lmin = const_cast(slminStr.c_str()); char* lmax = const_cast(slmaxStr.c_str()); char* dmin = const_cast(sdminStr.c_str()); char* dmax = const_cast(sdmaxStr.c_str()); #endif size_t j = 0; // for MS VC++ switch (type) { case VTushort: case Tushort: fits_read_key_lng(fitsPointer(),lmin,pl,0,&status); if (status != 0) pl[0] = LLIMITUSHORT; fits_read_key_lng(fitsPointer(),lmax,pl+1,0,&status); if (status != 0) pl[1] = ULIMITUSHORT; fits_read_key_lng(fitsPointer(),dmin,pl+2,0,&status); if (status != 0) pl[2] = LLIMITUSHORT; fits_read_key_lng(fitsPointer(),dmax,pl+3,0,&status); if (status != 0) pl[3] = ULIMITUSHORT; for (j = 0; j < 4; ++j) pus[j] = pl[j]; if (m_repeat == 1) { ColumnData& col = dynamic_cast&>(*this); col.setDataLimits(pus); } else { ColumnVectorData& col = dynamic_cast&>(*this); col.setDataLimits(pus); } break; case VTshort: case Tshort: fits_read_key_lng(fitsPointer(),lmin,pl,0,&status); if (status != 0) pl[0] = LLIMITSHORT; fits_read_key_lng(fitsPointer(),lmax,pl+1,0,&status); if (status != 0) pl[1] = ULIMITSHORT; fits_read_key_lng(fitsPointer(),dmin,pl+2,0,&status); if (status != 0) pl[2] = LLIMITSHORT; fits_read_key_lng(fitsPointer(),dmax,pl+3,0,&status); if (status != 0) pl[3] = ULIMITSHORT; for ( j = 0; j < 4; ++j) ps[j] = pl[j]; if (m_repeat == 1 && type > 0) { ColumnData& col = dynamic_cast&>(*this); col.setDataLimits(static_cast(ps)); } else { ColumnVectorData& col = dynamic_cast&>(*this); col.setDataLimits(static_cast(ps)); } break; case VTbyte: case VTbit: case Tbit: case Tbyte: fits_read_key_lng(fitsPointer(),lmin,pl,0,&status); if (status != 0) pl[0] = LLIMITUCHAR; fits_read_key_lng(fitsPointer(),lmax,pl+1,0,&status); if (status != 0) pl[1] = ULIMITUCHAR; fits_read_key_lng(fitsPointer(),dmin,pl+2,0,&status); if (status != 0) pl[2] = LLIMITUCHAR; fits_read_key_lng(fitsPointer(),dmax,pl+3,0,&status); if (status != 0) pl[3] = ULIMITUCHAR; for ( j = 0; j < 4; ++j) puc[j] = pl[j]; if (m_repeat == 1 && type > 0) { ColumnData& col = dynamic_cast&>(*this); col.setDataLimits(puc); } else { ColumnVectorData& col = dynamic_cast&>(*this); col.setDataLimits(puc); } break; case VTint: case Tint: fits_read_key_lng(fitsPointer(),lmin,pl,0,&status); if (status != 0) pl[0] = LLIMITINT; fits_read_key_lng(fitsPointer(),lmax,pl+1,0,&status); if (status != 0) pl[1] = ULIMITINT; fits_read_key_lng(fitsPointer(),dmin,pl+2,0,&status); if (status != 0) pl[2] = LLIMITINT; fits_read_key_lng(fitsPointer(),dmax,pl+3,0,&status); if (status != 0) pl[3] = ULIMITINT; for ( j = 0; j < 4; ++j) pi[j] = pl[j]; if (m_repeat == 1 && type > 0) { ColumnData& col = dynamic_cast&>(*this); col.setDataLimits(pi); } else { ColumnVectorData& col = dynamic_cast&>(*this); col.setDataLimits(pi); } break; case VTuint: case Tuint: fits_read_key_lng(fitsPointer(),lmin,pl,0,&status); if (status != 0) pui[0] = LLIMITUINT; else pui[0] = pl[0]; fits_read_key_lng(fitsPointer(),lmax,pl+1,0,&status); if (status != 0) pui[1] = ULIMITUINT; else pui[1] = pl[1]; fits_read_key_lng(fitsPointer(),dmin,pl+2,0,&status); if (status != 0) pui[2] = LLIMITUINT; else pui[2] = pl[2]; fits_read_key_lng(fitsPointer(),dmax,pl+3,0,&status); if (status != 0) pui[3] = ULIMITUINT; else pui[3] = pl[3]; if (m_repeat == 1 && type > 0) { ColumnData& col = dynamic_cast&>(*this); col.setDataLimits(pui); } else { ColumnVectorData& col = dynamic_cast&>(*this); col.setDataLimits(pui); } break; case VTlong: case Tlong: fits_read_key_lng(fitsPointer(),lmin,pl,0,&status); if (status != 0) pl[0] = LLIMITLONG; fits_read_key_lng(fitsPointer(),lmax,pl+1,0,&status); if (status != 0) pl[1] = ULIMITLONG; fits_read_key_lng(fitsPointer(),dmin,pl+2,0,&status); if (status != 0) pl[2] = LLIMITLONG; fits_read_key_lng(fitsPointer(),dmax,pl+3,0,&status); if (status != 0) pl[3] = ULIMITLONG; if (m_repeat == 1 && type > 0) { ColumnData& col = dynamic_cast&>(*this); col.setDataLimits(pl); } else { ColumnVectorData& col = dynamic_cast&>(*this); col.setDataLimits(pl); } break; case VTlonglong: case Tlonglong: // NOTE: cfitsio cannot currently read kewyords // of type long long. fits_read_key_lng(fitsPointer(),lmin,pl,0,&status); pll[0] = status ? LLIMITLONGLONG : pl[0]; fits_read_key_lng(fitsPointer(),lmax,pl+1,0,&status); pll[1] = status ? ULIMITLONGLONG : pl[1]; fits_read_key_lng(fitsPointer(),dmin,pl+2,0,&status); pll[2] = status ? LLIMITLONGLONG : pl[2]; fits_read_key_lng(fitsPointer(),dmax,pl+3,0,&status); pll[3] = status ? ULIMITLONGLONG : pl[3]; if (m_repeat == 1 && type > 0) { ColumnData& col = dynamic_cast&>(*this); col.setDataLimits(pll); } else { ColumnVectorData& col = dynamic_cast&>(*this); col.setDataLimits(pll); } break; case VTulong: case Tulong: fits_read_key_lng(fitsPointer(),lmin,pl,0,&status); if (status != 0) pul[0] = LLIMITULONG; else pul[0] = pl[0]; fits_read_key_lng(fitsPointer(),lmax,pl+1,0,&status); if (status != 0) pul[1] = ULIMITULONG; else pul[1] = pl[1]; fits_read_key_lng(fitsPointer(),dmin,pl+2,0,&status); if (status != 0) pul[2] = LLIMITULONG; else pul[2] = pl[2]; fits_read_key_lng(fitsPointer(),dmax,pl+3,0,&status); if (status != 0) pul[3] = ULIMITULONG; else pul[3] = pl[3]; if (m_repeat == 1 && type > 0) { ColumnData& col = dynamic_cast&>(*this); col.setDataLimits(pul); } else { ColumnVectorData& col = dynamic_cast&>(*this); col.setDataLimits(pul); } break; case VTfloat: case Tfloat: fits_read_key_flt(fitsPointer(),lmin,pf,0,&status); if (status != 0) pf[0] = LLIMITFLOAT; fits_read_key_flt(fitsPointer(),lmax,pf+1,0,&status); if (status != 0) pf[1] = ULIMITFLOAT; fits_read_key_flt(fitsPointer(),dmin,pf+2,0,&status); if (status != 0) pf[2] = LLIMITFLOAT; fits_read_key_flt(fitsPointer(),dmax,pf+3,0,&status); if (status != 0) pf[3] = ULIMITFLOAT; if (m_repeat == 1 && type > 0) { ColumnData& col = dynamic_cast&>(*this); col.setDataLimits(pf); } else { ColumnVectorData& col = dynamic_cast&>(*this); col.setDataLimits(pf); } break; case VTdouble: case Tdouble: fits_read_key_dbl(fitsPointer(),lmin,pd,0,&status); if (status != 0) pd[0] = LLIMITDOUBLE; fits_read_key_dbl(fitsPointer(),lmax,pd+1,0,&status); if (status != 0) pd[1] = ULIMITDOUBLE; fits_read_key_dbl(fitsPointer(),dmin,pd+2,0,&status); if (status != 0) pd[2] = LLIMITDOUBLE; fits_read_key_dbl(fitsPointer(),dmax,pd+3,0,&status); if (status != 0) pd[3] = ULIMITDOUBLE; if (m_repeat == 1 && type > 0) { ColumnData& col = dynamic_cast&>(*this); col.setDataLimits(pd); } else { ColumnVectorData& col = dynamic_cast&>(*this); col.setDataLimits(pd); } break; case VTcomplex: case Tcomplex: fits_read_key_cmp(fitsPointer(),lmin,pf,0,&status); status != 0 ? cf[0] = std::complex(pf[0],pf[1]) : cf[0] = std::complex(-ULIMITFLOAT,-ULIMITFLOAT); fits_read_key_cmp(fitsPointer(),lmax,pf,0,&status); status != 0 ? cf[1] = std::complex(pf[0],pf[1]) : cf[1] = std::complex(ULIMITFLOAT,ULIMITFLOAT); fits_read_key_cmp(fitsPointer(),dmin,pf,0,&status); status != 0 ? cf[2] = std::complex(pf[0],pf[1]) : cf[2] = std::complex(-ULIMITFLOAT,ULIMITFLOAT); fits_read_key_cmp(fitsPointer(),dmax,pf,0,&status); status != 0 ? cf[3] = std::complex(pf[0],pf[1]) : cf[3] = std::complex(ULIMITFLOAT,ULIMITFLOAT); if (m_repeat == 1 && type > 0) { ColumnData >& col = dynamic_cast >&>(*this); col.setDataLimits(cf); } else { ColumnVectorData >& col = dynamic_cast >&>(*this); col.setDataLimits(cf); } break; case VTdblcomplex: case Tdblcomplex: fits_read_key_dblcmp(fitsPointer(),lmin,pd,0,&status); status != 0 ? cd[0] = std::complex(pd[0],pd[1]) : cd[0] = std::complex(-ULIMITDOUBLE,-ULIMITDOUBLE); fits_read_key_dblcmp(fitsPointer(),lmax,pd,0,&status); status != 0 ? cd[1] = std::complex(pd[0],pd[1]) : cd[1] = std::complex(ULIMITDOUBLE,ULIMITDOUBLE); fits_read_key_dblcmp(fitsPointer(),dmin,pd,0,&status); status != 0 ? cd[2] = std::complex(pd[0],pd[1]) : cd[2] = std::complex(-ULIMITDOUBLE,-ULIMITDOUBLE); fits_read_key_dblcmp(fitsPointer(),dmax,pd,0,&status); status != 0 ? cd[3] = std::complex(pd[0],pd[1]) : cd[3] = std::complex(ULIMITDOUBLE,ULIMITDOUBLE); if (m_repeat == 1 && type > 0) { ColumnData >& col = dynamic_cast >&>(*this); col.setDataLimits(cd); } else { ColumnVectorData >& col = dynamic_cast >&>(*this); col.setDataLimits(cd); } break; case Tstring: default: break; } } void Column::loadColumnKeys () { if (s_columnKeys.empty()) { s_columnKeys.resize(13); s_columnKeys[0] = s_TBCOL; s_columnKeys[1] = s_TTYPE; s_columnKeys[2] = s_TFORM; s_columnKeys[3] = s_TUNIT; s_columnKeys[4] = s_TNULL; s_columnKeys[5] = s_TDISP; s_columnKeys[6] = s_TDIM; s_columnKeys[7] = s_TSCAL; s_columnKeys[8] = s_TZERO; s_columnKeys[9] = s_TLMIN; s_columnKeys[10] = s_TLMAX; s_columnKeys[11] = s_TDMIN; s_columnKeys[12] = s_TDMAX; } } void Column::name (const String& value) { m_name = value; } void Column::unit (const String& value) { m_unit = value; } void Column::format (const String& value) { m_format = value; } void Column::varLength (bool value) { m_varLength = value; } long Column::numberOfElements (long& first, long& last) { // user expects 1 based indexing. If 0 based indices are supplied, // add one to both ranges. if (first == 0) { first +=1; last = std::min(static_cast(rows()), static_cast( last+1)); } last = std::min(static_cast(rows()),last); if (last < first ) throw RangeError(name()); return last - first + 1; } // Additional Declarations void Column::write(const std::vector& indata, long firstRow) { try { ColumnData& col = dynamic_cast& >(*this); col.writeData(indata,firstRow); } catch (std::bad_cast) { throw WrongColumnType(" downcasting string column "); } } void Column::write (const std::vector >& indata, long firstRow) { // we'll allow casting between float and double but that's // as far as it goes. firstRow = std::max(firstRow,static_cast(1)); if ( ColumnData >* col = dynamic_cast >*>(this) ) { col->writeData(indata,firstRow); } else { if ( type() == Tcomplex) { String msg("Incorrect call: writing to vector column "); msg += name(); msg += " requires specification of # rows or vector lengths"; throw WrongColumnType(msg); } else { try { ColumnData >& col = dynamic_cast >&>(*this); std::vector > tmp(indata.size()); #ifdef TEMPLATE_AMBIG_DEFECT FITSUtil::fillMSvdvf(tmp,indata,1,indata.size()); #else FITSUtil::fill(tmp,indata,1,indata.size()); #endif col.writeData(tmp,firstRow); } catch (std::bad_cast) { String msg(" implicit conversion from complex to real data not allowed: Column "); msg += name(); throw InvalidDataType(msg); } } } } void Column::write (const std::vector >& indata, long firstRow) { firstRow = std::max(firstRow,static_cast(1)); if ( ColumnData >* col = dynamic_cast >*>(this)) { col->writeData(indata,firstRow); } else { if ( type() == Tdblcomplex) { String msg("Incorrect call: writing to vector column "); msg += name(); msg += " requires specification of # rows or vector lengths"; throw WrongColumnType(msg); } else { try { ColumnData >& col = dynamic_cast >&>(*this); std::vector > __tmp(indata.size()); #ifdef TEMPLATE_AMBIG_DEFECT FITSUtil::fillMSvfvd(__tmp,indata,1,indata.size()); #else FITSUtil::fill(__tmp,indata,1,indata.size()); #endif col.writeData(__tmp,firstRow); } catch (std::bad_cast) { String msg(" implicit conversion from complex to real data not allowed: Column "); msg += name(); throw InvalidDataType(msg); } } } } void Column::write (const std::valarray >& indata, long firstRow) { std::vector > __tmp; FITSUtil::fill(__tmp,indata); write(__tmp,firstRow); } void Column::write (const std::valarray >& indata, long firstRow) { std::vector > __tmp; FITSUtil::fill(__tmp,indata); write(__tmp,firstRow); } void Column::read(std::vector& vals, long first, long last) { try { ColumnData& col = dynamic_cast& >(*this); col.readData(first,last-first+1); #if TEMPLATE_AMBIG_DEFECT || TEMPLATE_AMBIG7_DEFECT FITSUtil::fillMSvsvs(vals,col.data(),first,last); #else FITSUtil::fill(vals,col.data(),first,last); #endif } catch (std::bad_cast) { throw WrongColumnType(" downcasting string column "); } } void Column::read(std::vector< std::complex >& vals , long first, long last) { if (ColumnData< std::complex >* col = dynamic_cast >*>(this)) { // fails if user requested outputType different from input type. if (!isRead()) col->readColumnData(first,last - first + 1); // scalar column with vector output can just be assigned. #ifdef TEMPLATE_AMBIG_DEFECT FITSUtil::fillMSvfvf(vals,col->data(),first,last); #else FITSUtil::fill(vals,col->data(),first,last); #endif } else { if ( type() == Tcomplex) { String msg("Incorrect call: writing to vector column "); msg += name(); msg += " requires specification of # rows or vector lengths"; throw WrongColumnType(msg); } else { try { ColumnData >& col = dynamic_cast >&>(*this); if (!isRead()) col.readColumnData(first,last - first + 1); #ifdef TEMPLATE_AMBIG_DEFECT FITSUtil::fillMSvfvd(vals,col.data(),first,last); #else FITSUtil::fill(vals,col.data(),first,last); #endif } catch (std::bad_cast) { String msg(" implicit conversion from complex to real data not allowed: Column "); msg += name(); throw InvalidDataType(msg); } } } } void Column::read(std::vector< std::complex >& vals, long first, long last) { if (ColumnData >* col = dynamic_cast >*>(this)) { // fails if user requested outputType different from input type. if (!isRead()) col->readColumnData(first,last - first + 1); // scalar column with vector output can just be assigned. #ifdef TEMPLATE_AMBIG_DEFECT FITSUtil::fillMSvdvd(vals,col->data(),first,last); #else FITSUtil::fill(vals,col->data(),first,last); #endif } else { if ( type() == Tdblcomplex) { String msg("Incorrect call: writing to vector column "); msg += name(); msg += " requires specification of # rows or vector lengths"; throw WrongColumnType(msg); } else { try { ColumnData >& col = dynamic_cast >&>(*this); if (!isRead()) col.readColumnData(first,last - first + 1); #ifdef TEMPLATE_AMBIG_DEFECT FITSUtil::fillMSvdvf(vals,col.data(),first,last); #else FITSUtil::fill(vals,col.data(),first,last); #endif } catch (std::bad_cast) { String msg(" implicit conversion from complex to real data not allowed: Column "); msg += name(); throw InvalidDataType(msg); } } } } void Column::read(std::valarray >& vals, long row) { if ( ColumnVectorData >* col = dynamic_cast >*>(this)) { // fails if user requested outputType different from input type. // input and output are both valarrays. Since one should not // be able to call a constructor for a non-numeric valarray type, // there shouldn't be any InvalidType problems. However, there // is still the vector/scalar possibility and the implicit // conversion request to deal with. if (!isRead()) col->readRow(row); FITSUtil::fill(vals,col->data(row)); } else { if ( type() == Tcomplex ) { // in this case user tried to read vector row from scalar column. // one could be charitable and return a valarray of size 1, // but... I'm going to throw an exception suggesting the user // might not have meant that. throw Column::WrongColumnType(name()); } else { try { ColumnVectorData >& col = dynamic_cast >&>(*this); if (!isRead()) col.readRow(row); FITSUtil::fill(vals,col.data(row)); } catch (std::bad_cast) { String msg(" implicit conversion from complex to real data not allowed: Column "); msg += name(); throw InvalidDataType(msg); } } } } void Column::read(std::valarray >& vals, long row) { if ( ColumnVectorData >* col = dynamic_cast >*>(this)) { // fails if user requested outputType different from input type. // input and output are both valarrays. Since one should not // be able to call a constructor for a non-numeric valarray type, // there shouldn't be any InvalidType problems. However, there // is still the vector/scalar possibility and the implicit // conversion request to deal with. if (!isRead()) col->readRow(row); FITSUtil::fill(vals,col->data(row)); } else { if ( type() == Tdblcomplex ) { // in this case user tried to read vector row from scalar column. // one could be charitable and return a valarray of size 1, // but... I'm going to throw an exception suggesting the user // might not have meant that. throw Column::WrongColumnType(name()); } else { try { ColumnVectorData >& col = dynamic_cast >&>(*this); if (!isRead()) col.readRow(row); FITSUtil::fill(vals,col.data(row)); } catch (std::bad_cast) { String msg(" implicit conversion from complex to real data not allowed: Column "); msg += name(); throw InvalidDataType(msg); } } } } void Column::readArrays(std::vector > >& vals, long first, long last) { // again, can only call this if the entire column has been read from disk. // user expects 1 based indexing. If 0 based indices are supplied, // add one to both ranges. long range = numberOfElements(first,last); vals.resize(range); if ( ColumnVectorData >* col = dynamic_cast >*>(this)) { for (int j = 0; j < range; ++j) { if (!isRead()) col->readRow(j + first); FITSUtil::fill(vals[j],col->data(j+first)); } } else { if ( type() == Tcomplex) { // in this case user tried to read vector data from scalar, // (i.e. first argument was vector >. // since the cast won't fail on template parameter grounds. throw Column::WrongColumnType(name()); } // the InvalidDataType exception should not be possible. try { ColumnVectorData >& col = dynamic_cast >&>(*this); for (int j = 0; j < range; ++j) { if (!isRead()) col.readRow(j + first); FITSUtil::fill(vals[j],col.data(j+first)); } } catch (std::bad_cast) { String msg(" implicit conversion from complex to real data not allowed: Column "); msg += name(); throw InvalidDataType(msg); } } } void Column::readArrays(std::vector > >& vals, long first, long last) { // again, can only call this if the entire column has been read from disk. // user expects 1 based indexing. If 0 based indices are supplied, // add one to both ranges. long range = numberOfElements(first,last); vals.resize(range); if ( ColumnVectorData >* col = dynamic_cast >*>(this)) { for (int j = 0; j < range; ++j) { if (!isRead()) col->readRow(j + first); FITSUtil::fill(vals[j],col->data(j+first)); } } else { if ( type() == Tdblcomplex) { // in this case user tried to read vector data from scalar, // (i.e. first argument was vector >. // since the cast won't fail on template parameter grounds. throw Column::WrongColumnType(name()); } // the InvalidDataType exception should not be possible. try { ColumnVectorData >& col = dynamic_cast >&>(*this); for (int j = 0; j < range; ++j) { if (!isRead()) col.readRow(j + first); FITSUtil::fill(vals[j],col.data(j+first)); } } catch (std::bad_cast) { String msg(" implicit conversion from complex to real data not allowed: Column "); msg += name(); throw InvalidDataType(msg); } } } void Column::write (const std::valarray >& indata, long nRows, long firstRow) { if (nRows <= 0) throw InvalidNumberOfRows(nRows); firstRow = std::max(firstRow,static_cast(1)); if (ColumnVectorData >* col = dynamic_cast >*>(this)) { col->writeData(indata,nRows,firstRow); } else { // alright, input data type has to be rewritten as output // data type. if ( type() == Tcomplex ) { String msg("Incorrect call: writing to valarray data to scalar column: "); msg += name(); msg += " does not require specification of number of rows"; throw WrongColumnType(msg); } else { try { ColumnVectorData >& col = dynamic_cast >&>(*this); std::valarray > __tmp; FITSUtil::fill(__tmp,indata); col.writeData(__tmp,nRows,firstRow); } catch (std::bad_cast) { String msg(" implicit conversion from complex to real data not allowed: Column "); msg += name(); throw InvalidDataType(msg); } } } } void Column::write (const std::valarray >& indata, long nRows, long firstRow) { if (nRows <= 0) throw InvalidNumberOfRows(nRows); firstRow = std::max(firstRow,static_cast(1)); if (ColumnVectorData >* col = dynamic_cast >*>(this)) { col->writeData(indata,nRows,firstRow); } else { // alright, input data type has to be rewritten as output // data type. if ( type() == Tdblcomplex ) { String msg("Incorrect call: writing to valarray data to scalar column: "); msg += name(); msg += " does not require specification of number of rows"; throw WrongColumnType(msg); } else { try { ColumnVectorData >& col = dynamic_cast >&>(*this); std::valarray > __tmp; FITSUtil::fill(__tmp,indata); col.writeData(__tmp,nRows,firstRow); } catch (std::bad_cast) { String msg(" implicit conversion from complex to real data not allowed: Column "); msg += name(); throw InvalidDataType(msg); } } } } void Column::write (const std::vector >& indata, long nRows, long firstRow) { std::valarray > __tmp(indata.size()); #ifdef TEMPLATE_AMBIG_DEFECT FITSUtil::fillMSafvf(__tmp,indata,1,indata.size()); #else FITSUtil::fill(__tmp,indata,1,indata.size()); #endif write(__tmp,nRows,firstRow); } void Column::write (const std::vector >& indata, long nRows, long firstRow) { std::valarray > __tmp(indata.size()); #ifdef TEMPLATE_AMBIG_DEFECT FITSUtil::fillMSadvd(__tmp,indata,1,indata.size()); #else FITSUtil::fill(__tmp,indata,1,indata.size()); #endif write(__tmp,nRows,firstRow); } void Column::write (const std::valarray >& indata, const std::vector& vectorLengths, long firstRow) { using std::valarray; firstRow = std::max(firstRow,static_cast(1)); if (ColumnVectorData >* col = dynamic_cast >*>(this)) { col->writeData(indata,vectorLengths,firstRow); } else { if ( type() == Tcomplex ) { String msg("Incorrect call: scalar column "); msg += name(); msg += " does not have vector lengths"; throw WrongColumnType(msg); } else { try { ColumnVectorData >& col = dynamic_cast >&>(*this); valarray > __tmp; FITSUtil::fill(__tmp,indata); col.writeData(__tmp,vectorLengths,firstRow); } catch (std::bad_cast) { String msg(" implicit conversion from complex to real data not allowed: Column "); msg += name(); throw InvalidDataType(msg); } } } } void Column::write (const std::valarray >& indata, const std::vector& vectorLengths, long firstRow) { using std::valarray; firstRow = std::max(firstRow,static_cast(1)); if (ColumnVectorData >* col = dynamic_cast >*>(this)) { col->writeData(indata,vectorLengths,firstRow); } else { if ( type() == Tdblcomplex ) { String msg("Incorrect call: scalar column "); msg += name(); msg += " does not have vector lengths"; throw WrongColumnType(msg); } else { try { ColumnVectorData >& col = dynamic_cast >&>(*this); valarray > __tmp; FITSUtil::fill(__tmp,indata); col.writeData(__tmp,vectorLengths,firstRow); } catch (std::bad_cast) { String msg(" implicit conversion from complex to real data not allowed: Column "); msg += name(); throw InvalidDataType(msg); } } } } void Column::write (const std::vector >& indata, const std::vector& vectorLengths, long firstRow) { std::valarray > __tmp(indata.size()); #ifdef TEMPLATE_AMBIG_DEFECT FITSUtil::fillMSafvf(__tmp,indata,1,indata.size()); #else FITSUtil::fill(__tmp,indata,1,indata.size()); #endif write(__tmp,vectorLengths,firstRow); } void Column::write (const std::vector >& indata, const std::vector& vectorLengths, long firstRow) { std::valarray > __tmp(indata.size()); #ifdef TEMPLATE_AMBIG_DEFECT FITSUtil::fillMSadvd(__tmp,indata,1,indata.size()); #else FITSUtil::fill(__tmp,indata,1,indata.size()); #endif write(__tmp,vectorLengths,firstRow); } void Column::writeArrays (const std::vector > >& indata, long firstRow) { firstRow = std::max(firstRow,static_cast(1)); if (ColumnVectorData >* col = dynamic_cast >*>(this)) { col->writeData(indata,firstRow); } else { if ( type() == Tcomplex ) { String msg("Incorrect call: writing vectors to scalar column "); throw WrongColumnType(msg); } else { size_t n(indata.size()); try { ColumnVectorData >& col = dynamic_cast >&>(*this); std::vector > > __tmp(n); for (size_t i = 0; i < n; ++i) { FITSUtil::fill(__tmp[i],indata[i]); } col.writeData(__tmp,firstRow); } catch (std::bad_cast) { String msg (" implicit conversion from complex to real data not allowed: Column "); msg += name(); throw InvalidDataType(msg); } } } } void Column::writeArrays (const std::vector > >& indata, long firstRow) { firstRow = std::max(firstRow,static_cast(1)); if (ColumnVectorData >* col = dynamic_cast >*>(this)) { col->writeData(indata,firstRow); } else { if ( type() == Tcomplex ) { String msg("Incorrect call: writing vectors to scalar column "); throw WrongColumnType(msg); } else { size_t n(indata.size()); try { ColumnVectorData >& col = dynamic_cast >&>(*this); std::vector > > __tmp(n); for (size_t i = 0; i < n; ++i) { FITSUtil::fill(__tmp[i],indata[i]); } col.writeData(__tmp,firstRow); } catch (std::bad_cast) { String msg (" implicit conversion from complex to real data not allowed: Column "); msg += name(); throw InvalidDataType(msg); } } } } } // namespace CCfits CCfits/ColumnCreator.cxx0000644000225700000360000003401611470265344015032 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman // Column #include "Column.h" // Table #include "Table.h" // ColumnData #include "ColumnData.h" // ColumnVectorData #include "ColumnVectorData.h" // ColumnCreator #include "ColumnCreator.h" #include #include using std::complex; namespace CCfits { // Class CCfits::ColumnCreator ColumnCreator::ColumnCreator (Table* p) : m_parent(p) { } ColumnCreator::~ColumnCreator() { } Column * ColumnCreator::MakeColumn (const int index, const String &name, const String &format, const String &unit, const long repeat, const long width, const String &comment, const int decimals) { return 0; } Column * ColumnCreator::getColumn (int number, const String& name, const String& format, const String& unit) { long repeat=1; long width=1; int type=0; double tscale = 1; double tzero = 0; getScaling(number, type, repeat, width, tscale, tzero); return createColumn(number,ValueType(type),name,format,unit,repeat,width,tscale,tzero); } Column * ColumnCreator::createColumn (int number, ValueType type, const String &name, const String &format, const String &unit, long repeat, long width, double scaleFactor, double offset, const String &comment) { switch(type) { case Tstring: m_column = new ColumnData(number, name, type, format, unit, m_parent, 1, width); break; case VTushort: m_column = new ColumnVectorData(number, name, type, format,unit, m_parent, repeat); m_column->zero(USBASE); m_column->scale(1); break; case Tushort: if (repeat == 1) { m_column = new ColumnData(number, name, type, format,unit, m_parent); } else { m_column = new ColumnVectorData(number, name, type, format,unit, m_parent, repeat); } m_column->zero(USBASE); m_column->scale(1); break; case VTshort: m_column = new ColumnVectorData(number, name, type, format,unit, m_parent, repeat); break; case Tshort: if (repeat == 1) { m_column = new ColumnData(number, name, type, format,unit, m_parent); } else { m_column = new ColumnVectorData(number, name, type, format,unit, m_parent, repeat); } break; case VTlogical: m_column = new ColumnVectorData(number, name, type, format,unit, m_parent, repeat); break; case Tlogical: if (repeat == 1) { m_column = new ColumnData(number, name, type, format,unit, m_parent); } else { m_column = new ColumnVectorData(number, name, type, format,unit, m_parent, repeat); } break; case VTbyte: case VTbit: m_column = new ColumnVectorData(number, name, type, format,unit, m_parent, repeat); break; case Tbit: case Tbyte: if (repeat == 1) { m_column = new ColumnData(number, name, type, format,unit, m_parent); } else { m_column = new ColumnVectorData(number, name, type, format,unit, m_parent, repeat); } break; case VTint: m_column = new ColumnVectorData(number, name, type, format,unit, m_parent, repeat); break; case Tint: if (repeat == 1) { m_column = new ColumnData(number, name, type, format,unit, m_parent); } else { m_column = new ColumnVectorData(number, name, type, format,unit, m_parent, repeat); } break; case VTuint: m_column = new ColumnVectorData(number, name, type, format,unit, m_parent, repeat); m_column->zero(ULBASE); m_column->scale(1); break; case Tuint: if (repeat == 1) { m_column = new ColumnData(number, name, type, format,unit, m_parent); } else { m_column = new ColumnVectorData(number, name, type, format,unit, m_parent, repeat); } m_column->zero(ULBASE); m_column->scale(1); break; case VTlong: m_column = new ColumnVectorData(number, name, type, format,unit, m_parent, repeat); break; case Tlong: if (repeat == 1) { m_column = new ColumnData(number, name, type, format,unit, m_parent); } else { m_column = new ColumnVectorData(number, name, type, format,unit, m_parent, repeat); } break; case VTlonglong: m_column = new ColumnVectorData(number, name, type, format,unit, m_parent, repeat); break; case Tlonglong: if (repeat == 1) { m_column = new ColumnData(number, name, type, format,unit, m_parent); } else { m_column = new ColumnVectorData(number, name, type, format,unit, m_parent, repeat); } break; case VTulong: m_column = new ColumnVectorData(number, name, type, format,unit, m_parent, repeat); m_column->zero(ULBASE); m_column->scale(1); break; case Tulong: if (repeat == 1) { m_column = new ColumnData(number, name, type, format,unit, m_parent); } else { m_column = new ColumnVectorData(number, name, type, format,unit, m_parent, repeat); } m_column->zero(ULBASE); m_column->scale(1); break; case VTfloat: m_column = new ColumnVectorData(number, name, type, format,unit, m_parent, repeat); break; case Tfloat: if (repeat == 1) { m_column = new ColumnData(number, name, type, format,unit, m_parent); } else { m_column = new ColumnVectorData(number, name, type, format,unit, m_parent, repeat); } break; case VTdouble: m_column = new ColumnVectorData(number, name, type, format,unit, m_parent, repeat); break; case Tdouble: if (repeat == 1) { m_column = new ColumnData(number, name, type, format,unit, m_parent); } else { m_column = new ColumnVectorData(number, name, type, format,unit, m_parent, repeat); } break; case VTcomplex: m_column = new ColumnVectorData >(number, name, type, format,unit, m_parent, repeat); break; case Tcomplex: if (repeat == 1) { m_column = new ColumnData >(number, name, type, format,unit, m_parent); } else { m_column = new ColumnVectorData >(number, name, type, format,unit, m_parent, repeat); } break; case VTdblcomplex: m_column = new ColumnVectorData >(number, name, type, format,unit, m_parent, repeat); break; case Tdblcomplex: if (repeat == 1) { m_column = new ColumnData >(number, name, type, format,unit, m_parent); } else { m_column = new ColumnVectorData >(number, name, type, format,unit, m_parent, repeat); } break; default: // replace with exception. throw FitsFatal("Unknown ValueType in ColumnCreator"); } if ( scaleFactor != 1) { m_column->scale(scaleFactor); m_column->zero(offset); } return m_column; } void ColumnCreator::getScaling (int index, int& type, long& repeat, long& width, double& tscale, double& tzero) { int status (0); if (fits_get_coltype(m_parent->fitsPointer(), index, &type, &repeat, &width, &status)) { throw FitsError(status); } int absType (std::abs(type)) ; FITSUtil::auto_array_ptr pKeyname( new char[FLEN_KEYWORD]); char* keyname = pKeyname.get(); sprintf(keyname, "%s%d",Column::TSCAL().c_str(),index); bool scalePresent (!fits_read_key(m_parent->fitsPointer(),Tdouble,keyname,&tscale,0,&status)); // reset the status flag if there was no scale factor so cfitsio will not // propagate the error code. if (!scalePresent) status = 0; sprintf(keyname, "%s%d", Column::TZERO().c_str(),index); fits_read_key(m_parent->fitsPointer(),Tdouble,keyname,&tzero,0,&status); // if there is no BSCALE key present or BSCALE == 1 ... if (!scalePresent || scalePresent && tscale == 1) { if ( !status ) { switch (absType) { case Tshort: if (tzero == USBASE) { type > 0 ? type = Tushort : type = VTushort ; } break; case Tint: if (tzero == ULBASE) { type > 0 ? type = Tuint : type = VTuint ; } break; case Tlong: if (tzero == ULBASE) { type > 0 ? type = Tulong : type = VTulong ; } break; default: break; } } } else // scale present and tmpScale != 1. { switch (absType) { case Tbit: case Tbyte: case Tint: case Tshort: type > 0 ? type = Tfloat: type = VTfloat; break; case Tlong: case Tlonglong: type > 0 ? type = Tdouble: type = VTdouble; break; default: break; // do nothing. } } } // Additional Declarations } // namespace CCfits CCfits/ColumnData.cxx0000644000225700000360000002251611470265344014306 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifdef _MSC_VER #include "MSconfig.h" // for truncation warning #endif // ColumnData #include "ColumnData.h" #include namespace CCfits { #ifndef SPEC_TEMPLATE_DECL_DEFECT template <> void ColumnData::writeData (const std::vector& indata, long firstRow, String* nullValue) { int status=0; char** columnData=FITSUtil::CharArray(indata); if ( fits_write_colnull(fitsPointer(), TSTRING, index(), firstRow, 1, indata.size(), columnData, 0, &status) != 0 ) throw FitsError(status); unsigned long elementsToWrite (indata.size() + firstRow - 1); std::vector __tmp(m_data); if (m_data.size() < elementsToWrite) { m_data.resize(elementsToWrite,""); std::copy(__tmp.begin(),__tmp.end(),m_data.begin()); } std::copy(indata.begin(),indata.end(),m_data.begin()+firstRow-1); for (size_t i = 0; i < indata.size(); ++i) { delete [] columnData[i]; } delete [] columnData; } #endif #ifndef SPEC_TEMPLATE_IMP_DEFECT #ifndef SPEC_TEMPLATE_DECL_DEFECT template <> void ColumnData::readColumnData (long firstRow, long nelements, String* nullValue) { int status = 0; int anynul = 0; char** array = new char*[nelements]; int j(0); for ( ; j < nelements; ++j) { array[j] = new char[width() + 1]; } char* nulval = 0; if (nullValue) { nulval = const_cast(nullValue->c_str()); } else { nulval = new char; *nulval = '\0'; } try { makeHDUCurrent(); if (fits_read_col_str(fitsPointer(),index(), firstRow,1,nelements, nulval,array, &anynul,&status) ) throw FitsError(status); } catch (FitsError) { // ugly. but better than leaking resources. for (int jj = 0; jj < nelements; ++jj) { delete [] array[jj]; } delete [] array; delete nulval; throw; } if (m_data.size() != rows()) setData(std::vector(rows(),String(nulval))); // the 'first -1 ' converts to zero based indexing. for ( j = 0; j < nelements; j++) { m_data[j - 1 + firstRow] = String(array[j]); } for ( j = 0; j < nelements; j++) { delete [] array[j]; } delete [] array; delete nulval; if (nelements == rows()) isRead(true); } #endif #endif #ifndef SPEC_TEMPLATE_IMP_DEFECT #ifndef SPEC_TEMPLATE_DECL_DEFECT template <> void ColumnData >::setDataLimits (complex* limits) { m_minLegalValue = limits[0]; m_maxLegalValue = limits[1]; m_minDataValue = limits[2]; m_maxDataValue = limits[3]; } template <> void ColumnData >::setDataLimits (complex* limits) { m_minLegalValue = limits[0]; m_maxLegalValue = limits[1]; m_minDataValue = limits[2]; m_maxDataValue = limits[3]; } template <> void ColumnData >::readColumnData (long firstRow, long nelements, complex* nullValue) { // specialization for ColumnData int status(0); int anynul(0); FITSUtil::auto_array_ptr pArray(new float[nelements*2]); float* array = pArray.get(); float nulval(0); makeHDUCurrent(); if (fits_read_col_cmp(fitsPointer(),index(), firstRow,1,nelements, nulval,array, &anynul,&status) ) throw FitsError(status); if (m_data.size() != rows()) m_data.resize(rows()); // the 'j -1 ' converts to zero based indexing. for (int j = 0; j < nelements; ++j) { m_data[j - 1 +firstRow] = std::complex(array[2*j],array[2*j+1]); } if (nelements == rows()) isRead(true); } template <> void ColumnData >::readColumnData (long firstRow, long nelements, complex* nullValue) { // specialization for ColumnData > int status(0); int anynul(0); FITSUtil::auto_array_ptr pArray(new double[nelements*2]); double* array = pArray.get(); double nulval(0); makeHDUCurrent(); if (fits_read_col_dblcmp(fitsPointer(), index(), firstRow,1,nelements, nulval,array, &anynul,&status) ) throw FitsError(status); if (m_data.size() != rows()) setData(std::vector >(rows(),nulval)); // the 'j -1 ' converts to zero based indexing. for (int j = 0; j < nelements; j++) { m_data[j - 1 + firstRow] = std::complex(array[2*j],array[2*j+1]); } if (nelements == rows()) isRead(true); } #endif #endif #ifndef SPEC_TEMPLATE_DECL_DEFECT template <> void ColumnData >::writeData (const std::vector >& inData, long firstRow, complex* nullValue) { int status(0); int nRows (inData.size()); FITSUtil::auto_array_ptr pData(new float[nRows*2]); float* Data = pData.get(); std::vector > __tmp(m_data); for (int j = 0; j < nRows; ++j) { Data[ 2*j] = inData[j].real(); Data[ 2*j + 1] = inData[j].imag(); } try { if (fits_write_col_cmp(fitsPointer(), index(), firstRow, 1, nRows,Data, &status) != 0) throw FitsError(status); long elementsToWrite(nRows + firstRow -1); if (elementsToWrite > static_cast(m_data.size())) { m_data.resize(elementsToWrite); } std::copy(inData.begin(),inData.end(),m_data.begin()+firstRow-1); // tell the Table that the number of rows has changed parent()->updateRows(); } catch (FitsError) // the only thing that can throw here. { // reset to original content and rethrow the exception. m_data.resize(__tmp.size()); m_data = __tmp; } } #endif #ifndef SPEC_TEMPLATE_DECL_DEFECT template <> void ColumnData >::writeData (const std::vector >& inData, long firstRow, complex* nullValue) { int status(0); int nRows (inData.size()); FITSUtil::auto_array_ptr pData(new double[nRows*2]); double* Data = pData.get(); std::vector > __tmp(m_data); for (int j = 0; j < nRows; ++j) { pData[ 2*j] = inData[j].real(); pData[ 2*j + 1] = inData[j].imag(); } try { if (fits_write_col_dblcmp(fitsPointer(), index(), firstRow, 1, nRows,Data, &status) != 0) throw FitsError(status); long elementsToWrite(nRows + firstRow -1); if (elementsToWrite > static_cast(m_data.size())) { m_data.resize(elementsToWrite); } std::copy(inData.begin(),inData.end(),m_data.begin()+firstRow-1); // tell the Table that the number of rows has changed parent()->updateRows(); } catch (FitsError) // the only thing that can throw here. { // reset to original content and rethrow the exception. m_data.resize(__tmp.size()); m_data = __tmp; } } #endif } // namespace CCfits CCfits/ColumnVectorData.cxx0000644000225700000360000003075411470265345015475 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman // ColumnVectorData #include "ColumnVectorData.h" namespace CCfits { #ifndef SPEC_TEMPLATE_IMP_DEFECT #ifndef SPEC_TEMPLATE_DECL_DEFECT // duplicated for each complex type to work around imagined or // actual compiler deficiencies. template <> void ColumnVectorData >::readColumnData(long firstRow, long nelements, long firstElem, std::complex* null ) { int status=0; float nulval (0); FITSUtil::auto_array_ptr pArray(new float[2*nelements]); float* array = pArray.get(); int anynul(0); if (fits_read_col_cmp(fitsPointer(),index(),firstRow, firstElem, nelements,nulval,array,&anynul,&status) ) throw FitsError(status); if (m_data.size() != static_cast(rows())) m_data.resize(rows()); std::valarray > readData(nelements); for (long j = 0; j < nelements; ++j) { readData[j] = std::complex(array[2*j],array[2*j+1]); } size_t countRead = 0; const size_t ONE = 1; if (m_data.size() != static_cast(rows())) m_data.resize(rows()); size_t vectorSize(0); if (!varLength()) { vectorSize = std::max(repeat(),ONE); // safety check. } else { // assume that the user specified the correct length for // variable columns. This should be ok since readVariableColumns // uses fits_read_descripts to return this information from the // fits pointer, and this is passed as nelements here. vectorSize = nelements; } size_t n = nelements; int i = firstRow; int ii = i - 1; while ( countRead < n) { std::valarray >& current = m_data[ii]; if (current.size() != vectorSize) current.resize(vectorSize,0.); int elementsInFirstRow = vectorSize-firstElem + 1; bool lastRow = ( (nelements - countRead) < vectorSize); if (lastRow) { int elementsInLastRow = nelements - countRead; std::copy(&readData[countRead],&readData[0]+nelements,¤t[0]); countRead += elementsInLastRow; } // what to do with complete rows. if firstElem == 1 the else { if (firstElem == 1 || (firstElem > 1 && i > firstRow) ) { current = readData[std::slice(vectorSize*(ii-firstRow)+ elementsInFirstRow,vectorSize,1)]; ++ii; ++i; countRead += vectorSize; } else { if (i == firstRow) { std::copy(&readData[0],&readData[0]+elementsInFirstRow, ¤t[firstElem]); countRead += elementsInFirstRow; ++i; ++ii; } } } } } #ifndef SPEC_TEMPLATE_DECL_DEFECT template <> void ColumnVectorData >::setDataLimits (complex* limits) { m_minLegalValue = limits[0]; m_maxLegalValue = limits[1]; m_minDataValue = limits[2]; m_maxDataValue = limits[3]; } template <> void ColumnVectorData >::setDataLimits (complex* limits) { m_minLegalValue = limits[0]; m_maxLegalValue = limits[1]; m_minDataValue = limits[2]; m_maxDataValue = limits[3]; } #endif template <> void ColumnVectorData >::readColumnData (long firstRow, long nelements,long firstElem, complex* nullValue) { // duplicated for each complex type to work around imagined or // actual compiler deficiencies. int status=0; double nulval (0); FITSUtil::auto_array_ptr pArray(new double[2*nelements]); double* array = pArray.get(); int anynul(0); if (fits_read_col_dblcmp(fitsPointer(),index(),firstRow, firstElem, nelements,nulval,array,&anynul,&status) ) throw FitsError(status); if (m_data.size() != static_cast(rows())) m_data.resize(rows()); std::valarray > readData(nelements); for (long j = 0; j < nelements; ++j) { readData[j] = std::complex(array[2*j],array[2*j+1]); } size_t countRead = 0; const size_t ONE = 1; if (m_data.size() != static_cast(rows())) m_data.resize(rows()); size_t vectorSize(0); if (!varLength()) { vectorSize = std::max(repeat(),ONE); // safety check. } else { // assume that the user specified the correct length for // variable columns. This should be ok since readVariableColumns // uses fits_read_descripts to return this information from the // fits pointer, and this is passed as nelements here. vectorSize = nelements; } size_t n = nelements; int i = firstRow; int ii = i - 1; while ( countRead < n) { std::valarray >& current = m_data[ii]; if (current.size() != vectorSize) current.resize(vectorSize,0.); int elementsInFirstRow = vectorSize-firstElem + 1; bool lastRow = ( (nelements - countRead) < vectorSize); if (lastRow) { int elementsInLastRow = nelements - countRead; std::copy(&readData[countRead],&readData[0]+nelements,¤t[0]); countRead += elementsInLastRow; } // what to do with complete rows. if firstElem == 1 the else { if (firstElem == 1 || (firstElem > 1 && i > firstRow) ) { current = readData[std::slice(vectorSize*(ii-firstRow)+ elementsInFirstRow,vectorSize,1)]; ++ii; ++i; countRead += vectorSize; } else { if (i == firstRow) { std::copy(&readData[0],&readData[0]+elementsInFirstRow, ¤t[firstElem]); countRead += elementsInFirstRow; ++i; ++ii; } } } } } template <> void ColumnVectorData >::writeFixedArray (complex* data, long nElements, long nRows, long firstRow, complex* nullValue) { int status(0); // check for sanity of inputs, then write to file. // this function writes only complete rows to a table with // fixed width rows. if ( nElements < nRows*static_cast(repeat()) ) { #ifdef SSTREAM_DEFECT std::ostrstream msgStr; #else std::ostringstream msgStr; #endif msgStr << " input array size: " << nElements << " required " << nRows*repeat(); #ifdef SSTREAM_DEFECT msgStr << std::ends; #endif String msg(msgStr.str()); throw Column::InsufficientElements(msg); } FITSUtil::auto_array_ptr realData(new float[2*nElements]); for (int j = 0; j < nElements; ++j) { realData[2*j] = data[j].real(); realData[2*j+1] = data[j].imag(); } if (fits_write_col_cmp(fitsPointer(),index(),firstRow, 1,nElements,realData.get(),&status)) throw FitsError(status); parent()->updateRows(); } template <> void ColumnVectorData >::writeFixedArray (complex* data, long nElements, long nRows, long firstRow, complex* nullValue) { int status(0); // check for sanity of inputs, then write to file. // this function writes only complete rows to a table with // fixed width rows. if ( nElements < nRows*static_cast(repeat()) ) { #ifdef SSTREAM_DEFECT std::ostrstream msgStr; #else std::ostringstream msgStr; #endif msgStr << " input array size: " << nElements << " required " << nRows*repeat(); String msg(msgStr.str()); throw Column::InsufficientElements(msg); } FITSUtil::auto_array_ptr realData(new double[2*nElements]); for (int j = 0; j < nElements; ++j) { realData[2*j] = data[j].real(); realData[2*j+1] = data[j].imag(); } if (fits_write_col_dblcmp(fitsPointer(),index(),firstRow, 1,nElements,realData.get(),&status)) throw FitsError(status); parent()->updateRows(); } #endif #endif #ifndef SPEC_TEMPLATE_DECL_DEFECT template <> void ColumnVectorData >::doWrite (std::complex* data, long row, long rowSize, long firstElem, std::complex* nullValue ) { int status(0); FITSUtil::auto_array_ptr carray( new float[2*rowSize]); for ( long j = 0 ; j < rowSize; ++ j) { carray[2*j] = data[j].real(); carray[2*j + 1] = data[j].imag(); } if (fits_write_col_cmp(fitsPointer(),index(),row,firstElem,rowSize, carray.get(),&status)) throw FitsError(status); } template <> void ColumnVectorData >::doWrite (std::complex* data, long row, long rowSize, long firstElem, std::complex* nullValue ) { int status(0); FITSUtil::auto_array_ptr carray( new double[2*rowSize]); for ( long j = 0 ; j < rowSize; ++ j) { carray[2*j] = data[j].real(); carray[2*j + 1] = data[j].imag(); } if (fits_write_col_dblcmp(fitsPointer(),index(),row,firstElem,rowSize, carray.get(),&status)) throw FitsError(status); } #endif } CCfits/ExtHDU.cxx0000644000225700000360000001647611656560561013375 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifdef _MSC_VER #include "MSconfig.h" // for truncation warning #endif #ifdef HAVE_CONFIG_H #include "config.h" #endif #ifdef SSTREAM_DEFECT #include using std::ostrstream; #else #include #endif #include // Column #include "Column.h" // FITS #include "FITS.h" // FITSBase #include "FITSBase.h" // ExtHDU #include "ExtHDU.h" // FitsError #include "FitsError.h" // FITSUtil #include "FITSUtil.h" namespace CCfits { // Class CCfits::ExtHDU::WrongExtensionType ExtHDU::WrongExtensionType::WrongExtensionType (const String& msg, bool silent) : FitsException("Fits Error: wrong extension type: ",silent) { addToMessage(msg); std::cerr << msg << '\n'; } // Class CCfits::ExtHDU String ExtHDU::s_missHDU = "$HDU$"; ExtHDU::ExtHDU(const ExtHDU &right) : HDU(right), m_pcount(right.m_pcount), m_gcount(right.m_gcount), m_version(right.m_version), m_xtension(right.m_xtension), m_name(right.m_name) { } ExtHDU::ExtHDU (FITSBase* p, HduType xtype, const String &hduName, int version) : HDU(p), m_pcount(0), m_gcount(1), m_version(version), m_xtension(xtype), m_name(hduName) { int status = 0; int htype = xtype; int number = -1; if ( hduName.substr(0,5) == s_missHDU ) { #ifdef SSTREAM_DEFECT std::istrstream fakeName( hduName.substr(5).c_str() ); #else std::istringstream fakeName(hduName.substr(5)); #endif fakeName >> number; } else { fits_get_hdu_num(fitsPointer(),&number); // Retrieve the HDU number. checkXtension tests against this. index(number-1); } // check we got the right kind of extension, since otherwise // we cannot proceed. CheckXtension throws an exception if // not, which is caught by the concrete class ctors. checkXtension(); } ExtHDU::ExtHDU (FITSBase* p, HduType xtype, const String &hduName, int bitpix, int naxis, const std::vector& axes, int version) : HDU(p, bitpix, naxis, axes), m_pcount(0), m_gcount(1), m_version(version), m_xtension(xtype), m_name(hduName) { // writing constructor. Extension must be supplied // since we must know what type of object to instantiate. } ExtHDU::ExtHDU (FITSBase* p, HduType xtype, int number) : HDU(p), m_pcount(0), m_gcount(1), m_version(1), m_xtension(xtype), m_name("") { // set current HDU number. This is required for makeThisCurrent. index(number+1); makeThisCurrent(); // set name and version. readHduName(fitsPointer(),number,m_name,m_version); // finally, check we got the right type of extension and throw an // exception otherwise. checkXtension(); } ExtHDU::~ExtHDU() { } void ExtHDU::checkXtension () { int status=0; int hType = -1; if (fits_get_hdu_type(fitsPointer(), &hType, &status) ) throw FitsError(status); if (HduType(hType) != m_xtension) throw HDU::InvalidExtensionType (" extension type mismatch between request and disk file ",true); } void ExtHDU::readHduName (const fitsfile* fptr, int hduIndex, String& hduName, int& hduVersion) { // get the name of the extension. If there is neither a HDUNAME // or an EXTNAME, make a name key for the multimap from the HDU number. int status=0; FITSUtil::auto_array_ptr pHduCstr(new char[FLEN_KEYWORD]); char* hduCstr = pHduCstr.get(); int htype = -1; String key = "EXTNAME"; char* extnm = const_cast(key.c_str()); // C requires fptr to be non-const, because the fitsfile pointer // saves the file state. fitsfile* cfptr = const_cast(fptr); if (fits_movabs_hdu(cfptr,hduIndex+1,&htype,&status) != 0) throw FitsError(status); status = fits_read_key_str(cfptr, extnm, hduCstr, NULL, &status); if (status != 0) { strcpy(hduCstr,""); status = 0; key = String("HDUNAME"); extnm = const_cast(key.c_str()); status = fits_read_key_str(cfptr, extnm, hduCstr, NULL, &status); } if (strlen(hduCstr) > 0) { hduName = String(hduCstr); long hduV = 1; hduVersion = hduV; // get the version number. key = String("EXTVER"); char* extv = const_cast(key.c_str()); status = fits_read_key_lng(cfptr, extv, &hduV, NULL, &status); if (status == 0) hduVersion = hduV; } else { #ifdef SSTREAM_DEFECT std::ostrstream fakeKey; #else std::ostringstream fakeKey; #endif fakeKey << s_missHDU << hduIndex; #ifdef SSTREAM_DEFECT msg << std::ends; #endif hduName = fakeKey.str(); } } void ExtHDU::makeThisCurrent () const { HDU::makeThisCurrent(); String tname(""); int tvers = 0; ExtHDU::readHduName(fitsPointer(),index(),tname,tvers); parent()->currentExtensionName() = tname; } Column& ExtHDU::column (const String& colName, bool caseSensitive) const { // if not overridden, throw an exception. // there might be a similar default implementation for function // that returns image data. throw WrongExtensionType(name()); } void ExtHDU::setColumn (const String& colname, Column* value) { throw WrongExtensionType(name()); } Column& ExtHDU::column (int colIndex) const { throw WrongExtensionType(name()); } long ExtHDU::rows () const { String msg(" rows function can only be called for Tables - HDU: "); msg += name(); throw WrongExtensionType(msg); } void ExtHDU::checkExtensionType () const { // throw if not overridden. throw WrongExtensionType(name()); } void ExtHDU::addColumn (ValueType type, const String& columnName, long repeatWidth, const String& colUnit, long decimals, size_t columnNumber) { // overridden separately in AsciiTable and BinTable throw WrongExtensionType(name()); } void ExtHDU::deleteColumn (const String& columnName) { // overridden in Table. throw WrongExtensionType(name()); } int ExtHDU::getVersion () { // the version keyword is not stored as a keyword object but // as a data attribute so we don't "addKeyword" but fits_read_key instead. static char EXTVER[] = {"EXTVER"}; int status(0); long vers(1); fits_read_key_lng(fitsPointer(),EXTVER,&vers,0,&status); if (status == 0) { m_version = vers; } else { if (status == KEY_NO_EXIST) { m_version = 1; } else throw FitsError(status); } return m_version; } long ExtHDU::getRowsize () const { // This should be overridden for Table classes, otherwise throw. throw WrongExtensionType("getRowsize can only be called for Table files"); return 0; } int ExtHDU::numCols () const { // overridden in Table. throw WrongExtensionType(name()); return 0; } const std::map& ExtHDU::column () const { // overridden in Table. throw WrongExtensionType(name()); } bool ExtHDU::isCompressed() const { int status=0; checkExtensionType(); return static_cast(fits_is_compressed_image(fitsPointer(), &status)); } // Additional Declarations } // namespace CCfits CCfits/FITS.cxx0000644000225700000360000013227111470265345013025 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman // Table #include "Table.h" // PHDU #include "PHDU.h" // FITSBase #include "FITSBase.h" // PrimaryHDU #include "PrimaryHDU.h" // FITS #include "FITS.h" #ifdef _MSC_VER #include "MSconfig.h" // for truncation warning #endif #ifdef HAVE_CONFIG_H #include "config.h" #endif #ifdef SSTREAM_DEFECT #include #else #include #endif using std::endl; using std::cout; using std::cerr; #include #include namespace CCfits { // Class CCfits::FITS::NoSuchHDU FITS::NoSuchHDU::NoSuchHDU (const String& diag, bool silent) : FitsException("FITS Error: Cannot read HDU in FITS file: ",silent) { //! Exception to be thrown by failed seek operations addToMessage(diag); if ( FITS::verboseMode() || !silent) std::cerr << diag << "\n"; } // Class CCfits::FITS::OperationNotSupported FITS::OperationNotSupported::OperationNotSupported (const String& msg, bool silent) : FitsException("FITS Error: Operation not supported: ",silent) { addToMessage(msg); if ( FITS::verboseMode() || !silent) std::cerr << msg << "\n"; } // Class CCfits::FITS::CantOpen FITS::CantOpen::CantOpen (const String& diag, bool silent) : FitsException("FITS Error: Cannot open file ",silent) { addToMessage(diag); if ( FITS::verboseMode() || !silent) std::cerr << diag << "\n"; } // Class CCfits::FITS::CantCreate FITS::CantCreate::CantCreate (const String& diag, bool silent) : FitsException(string("FITS Error: Cannot create file "),silent) { addToMessage(diag); if ( FITS::verboseMode() || !silent) std::cerr << diag << '\n'; } // Class CCfits::FITS bool FITS::s_verboseMode = false; FITS::FITS (const String &name, RWmode mode, bool readDataFlag, const std::vector& primaryKeys) : m_FITSImpl(0) { std::auto_ptr apBase(new FITSBase(name,mode)); m_FITSImpl = apBase.get(); if (mode == Read) { // If name includes extended file syntax, the initial hdu position // upon opening is not necessarily the primary header. int hduIdx = open(mode); // Read the primary header. This also moves the current hdu // to the primary. read(readDataFlag,primaryKeys); readExtensions(readDataFlag); // If extended syntax asked for a particular extension, // restore it as the current hdu position. if (hduIdx) { // This also calls makeThisCurrent. extension(hduIdx); } } else { // create a primary header in the receiving structure. // PHDU has a private constructor and must be instantiated here only. // this ensures that every FITS object has exactly one PHDU. if (create() ) { // create returns true if the file is either new // or overwritten, in which case we need to create // and write a new primary with BITPIX=8 and NAXIS=0. // Also if in here, no extended syntax was used. HDUCreator makePrimary(m_FITSImpl); pHDU(makePrimary.createImage(8,0,std::vector())); } else { // The create call above will have opened the file in rw mode. read(readDataFlag,primaryKeys); readExtensions(readDataFlag); // For backwards compatibility, reposition the current HDU to // be the primary. (In earlier versions, only the primary was // ever read when opening a pre-existing file in Write mode.) resetPosition(); } } apBase.release(); } FITS::FITS (const String &name, RWmode mode, const string &hduName, bool readDataFlag, const std::vector& hduKeys, const std::vector& primaryKey, int version) : m_FITSImpl(0) { std::auto_ptr apBase(new FITSBase(name,mode)); m_FITSImpl = apBase.get(); int extSyntHdu = open(mode); // create and read the Primary: assume here that a single HDU other than // the primary is requested, so don't read primary data. We can however // read some header info from the primary if (optionally) specified. read(false,primaryKey); read(hduName, readDataFlag, hduKeys,version); if (extSyntHdu && currentExtension().index() != extSyntHdu) { string msg("Hdu requested with extended syntax "); msg += "differs from that requested by name argument."; throw OperationNotSupported(msg); } apBase.release(); } FITS::FITS (const String &name, RWmode mode, const std::vector& hduNames, bool readDataFlag, const std::vector& primaryKey) : m_FITSImpl(0) { std::auto_ptr apBase(new FITSBase(name,mode)); m_FITSImpl = apBase.get(); int extSyntHdu = open(mode); read(readDataFlag,primaryKey); read(hduNames,readDataFlag); if (extSyntHdu) { // If hdu specified in extension is not included in // hduNames, throw. bool savVerbose = s_verboseMode; s_verboseMode = false; try { extension(extSyntHdu); } catch (...) { s_verboseMode = savVerbose; string msg("Hdu requested with extended syntax was not included "); msg += "in FITS constructor hduNames array."; throw OperationNotSupported(msg); } s_verboseMode = savVerbose; } apBase.release(); } FITS::FITS (const String& fileName, const FITS& source) : m_FITSImpl(0) { std::auto_ptr apBase(new FITSBase(fileName,Write)); m_FITSImpl = apBase.get(); if (create() ) { // create returns true if the file is either new // or overwritten, in which case we need to create // and write a new primary which is a clone of the source PHDU. pHDU(static_cast(source.pHDU().clone(m_FITSImpl))); } else { // Assume file already exists and user is not attempting to // overwrite with the '!' symbol. throw CantCreate(fileName); } int status(0); source.pHDU().makeThisCurrent(); if (fits_copy_hdu(source.fitsPointer(),m_FITSImpl->fptr(),0,&status)) throw FitsError(status); apBase.release(); } FITS::FITS (const String &name, RWmode mode, const std::vector& hduNames, const std::vector >& hduKeys, bool readDataFlag, const std::vector& primaryKeys, const std::vector& hduVersions) : m_FITSImpl(0) { std::auto_ptr apBase(new FITSBase(name,mode)); m_FITSImpl = apBase.get(); int extSyntHdu = open(mode); // read the primary header and read the data if readDataFlag is set. read(readDataFlag,primaryKeys); read(hduNames, hduKeys, readDataFlag, hduVersions); if (extSyntHdu) { // If hdu specified in extension is not included in // hduNames, throw. bool savVerbose = s_verboseMode; s_verboseMode = false; try { extension(extSyntHdu); } catch (...) { s_verboseMode = savVerbose; string msg("Hdu requested with extended syntax was not included "); msg += "in FITS constructor hduNames array."; throw OperationNotSupported(msg); } s_verboseMode = savVerbose; } apBase.release(); } FITS::FITS (const String& name, int bitpix, int naxis, long *naxes) : m_FITSImpl(0) { std::auto_ptr apBase(new FITSBase(name,Write)); m_FITSImpl = apBase.get(); std::vector va_naxes(naxis); std::copy(&naxes[0],&naxes[naxis],va_naxes.begin()); if (!create()) { // Assume file already exists and user did not specify overwrite // with the '!' symbol. throw CantCreate(name); } // create an HDU factory. HDUCreator makePrimary(m_FITSImpl); // set the PrimaryHDU. bitpix will determine the data type. pHDU(makePrimary.createImage(bitpix,naxis,va_naxes)); // If file name is explicitly indicating image compression, // pHDU won't hold the image. Therefore need to create an // extension here. string::size_type compressLoc = FITSUtil::checkForCompressString(m_FITSImpl->name()); if (compressLoc != string::npos) { HDUCreator newImage(m_FITSImpl); ExtHDU* newHDU = newImage.createImage(string("NoName"),bitpix, naxis, va_naxes, 1); addExtension(newHDU); string actualFileName(m_FITSImpl->name().substr(0, compressLoc)); m_FITSImpl->name() = actualFileName; m_FITSImpl->currentCompressionTileDim(naxis); } apBase.release(); } FITS::FITS (const string &name, RWmode mode, int hduIndex, bool readDataFlag, const std::vector& hduKeys, const std::vector& primaryKey) : m_FITSImpl(0) { std::auto_ptr apBase(new FITSBase(name,mode)); m_FITSImpl = apBase.get(); int extSyntHdu = open(mode); if (extSyntHdu && extSyntHdu != hduIndex) { string msg("FITS constructor hduIndex conflicts with HDU requested by extended syntax."); throw OperationNotSupported(msg); } // read the primary header. Allowing the user to read the primary data // and optional keys costs nothing here, although the likely use of this // constructor is to read a specified HDU from a file other than the Primary. read(readDataFlag,primaryKey); read(hduIndex,readDataFlag,hduKeys); apBase.release(); } FITS::FITS (const String &name, RWmode mode, const std::vector& searchKeys, const std::vector &searchValues, bool readDataFlag, const std::vector& hduKeys, const std::vector& primaryKey, int version) : m_FITSImpl(0) { std::auto_ptr apBase(new FITSBase(name,mode)); m_FITSImpl = apBase.get(); int extSyntHdu = open(mode); // read the primary header and read the data if readDataFlag is set. // create returns a PHDU if the index is 0. read(false,primaryKey); // create a primary header in the receiving structure. // PHDU has a private constructor and must be instantiated here only. // this ensures that every FITS object has exactly one PHDU read(searchKeys, searchValues, readDataFlag, hduKeys, version); apBase.release(); } FITS::~FITS() { destroy(); } void FITS::unmapExtension (ExtHDU& doomed) { const string& doomedName = doomed.name(); if ( extension().count(doomedName) == 1 ) { ExtMapIt x = extensionMap().lower_bound(doomedName); delete (*x).second; extensionMap().erase(x); } else { std::pair named = extensionMap().equal_range(doomedName); ExtMapIt x = named.first; while ( x != named.second) { if ( (*x).second->version() == doomed.version()) { delete (*x).second; extensionMap().erase(x); break; } ++x; } } } void FITS::clearErrors () { fits_clear_errmsg(); } void FITS::deleteExtension (const String& doomed, int version) { int status(0); ExtHDU& d = extension(doomed,version); // throws NoSuchHDU if it's not there. const int removeIdx = d.index(); std::vector trailingExts; ExtMapConstIt itExtMap = m_FITSImpl->extension().begin(); ExtMapConstIt itExtMapEnd = m_FITSImpl->extension().end(); while (itExtMap != itExtMapEnd) { if (itExtMap->second->index() > removeIdx) trailingExts.push_back(itExtMap->second); ++itExtMap; } if (fits_delete_hdu(fitsPointer(),0,&status)) throw FitsError(status); unmapExtension(d); // Reindex the extensions that follow the deleted. for (size_t i=0; iindex(trailingExts[i]->index()-1); } int FITS::nextVersionNumber (const String& inputName) const { int n(0); int status(0); int current(0); if (fits_get_num_hdus(fitsPointer(),&n,&status)) throw FitsError(status); fits_get_hdu_num(fitsPointer(),¤t); int count(0); for (int j = 2; j <= n; ++j) { if (nameOfUnmapped(j) == inputName) ++count; } if (fits_movabs_hdu(fitsPointer(),current,0,&status)) throw FitsError(status); return count+1; } void FITS::read (bool readDataFlag, const std::vector& keys) { // Move to and create primary header object. HDUCreator create(m_FITSImpl); int status=0, hduType=0; if (fits_movabs_hdu(m_FITSImpl->fptr(), 1, &hduType, &status)) throw FitsError(status); pHDU(static_cast(create.getHdu(0,readDataFlag,keys))); } void FITS::read (const String &hduName, bool readDataFlag, const std::vector &keys, int version) { // grab the requested extension if present. If not, create an ExtHDU object and add it, if it // exists in the file. The first clause copes with the results from the ctor that reads the // entire file for HDUs, the second when adding a new HDU from a file which selected HDUs were // read on construction. ExtHDU* requested = checkAlreadyRead(0, hduName, version); if (!requested) { HDUCreator create(m_FITSImpl); try { // primary is always false here. ExtHDU* newHDU = static_cast(create.getHdu(hduName, readDataFlag, keys, false, version)); // add a specified HDU in the file to the list of extensions. addExtension(newHDU); } catch ( ... ) { std::ostringstream msg; msg << hduName << " with version " << version; throw NoSuchHDU(msg.str()); } } else { requested->makeThisCurrent(); requested->readData(readDataFlag,keys); } } void FITS::read (const std::vector &hduNames, bool readDataFlag) { const size_t nHdu = hduNames.size(); const std::vector dummy; for (size_t i=0; i &hduNames, const std::vector > &keys, bool readDataFlag, const std::vector& hduVersions) { const size_t nHdu = hduNames.size(); const size_t nKeys = keys.size(); const size_t nVersions = hduVersions.size(); const std::vector dummy; for (size_t i=0; i& hduKeys = (i < nKeys) ? keys[i] : dummy; int version = (i < nVersions) ? hduVersions[i] : 1; try { read(hduNames[i], readDataFlag, hduKeys, version); } catch (NoSuchHDU&) { continue; } } } void FITS::read (int hduIndex, bool readDataFlag, const std::vector &keys) { if (hduIndex == 0) { std::cerr << "Primary header is always read, doesn't need to be requested." << std::endl; return; } ExtHDU* requested = checkAlreadyRead(hduIndex); if (!requested) { HDUCreator create(m_FITSImpl); try { ExtHDU* newHDU = static_cast(create.getHdu(hduIndex,readDataFlag,keys)); // add a specified HDU in the file to the list of extensions. addExtension(newHDU); } catch ( ... ) { std::ostringstream msg; msg << "Error: Could not read extension: " << hduIndex; throw NoSuchHDU(msg.str()); } } else { requested->makeThisCurrent(); requested->readData(readDataFlag,keys); } } void FITS::read (const std::vector& searchKeys, const std::vector &searchValues, bool readDataFlag, const std::vector& hduKeys, int version) { int totalHDUs = 1; int status = 0; if (fits_get_num_hdus(m_FITSImpl->fptr(),&totalHDUs,&status) != 0) throw FitsError(status); HDUCreator createTest(m_FITSImpl); int hduIndex; // there's one less extension than total HDUs! bool gotIt = false; for (hduIndex = 1; hduIndex < totalHDUs; hduIndex++ ) { try { std::auto_ptr testHDU(static_cast(createTest.getHdu(hduIndex,false,searchKeys))); std::vector testKeys(searchKeys); std::vector testResults(searchKeys.size(),""); // Missing key exceptions are caught and handled at a lower level. // The result will be a smaller sized testKeys vector. testHDU->readKeys(testKeys,testResults); using namespace FITSUtil; // first: we need to have matched as many keys as were input. if (testKeys.size() == searchKeys.size()) { // now go through and check the values that were read // against the input value list. size_t k = 0; gotIt = true; std::vector::const_iterator vi(searchValues.begin()); std::vector::const_iterator viEnd(searchValues.end()); while (vi != viEnd && gotIt) { if (vi->length()) { // we can at least ignore whitespace size_t first (testResults[k].find_first_not_of(" \t")); size_t last (testResults[k].find_last_not_of(" \t")); gotIt = (lowerCase(testResults[k].substr(first,last+first+1)) == lowerCase(*vi)); } ++k,++vi; } if (gotIt) { if (version == 1) break; else { int extver = 1; #ifdef TEMPLATE_AMBIG_DEFECT testHDU->readKeyMS("EXTVER",extver); #else testHDU->readKey("EXTVER",extver); #endif if (extver == version) break; else gotIt = false; } } } } catch (HDU::NoSuchKeyword) { // catches the case where the version is requested but there // is no version key present. createTest.reset(); continue; } catch (FitsError) { createTest.reset(); continue; } catch (...) { throw; } createTest.reset(); } if (gotIt) { String extname(""); int extver = 1; ExtHDU::readHduName(m_FITSImpl->fptr(),hduIndex,extname,extver); read(extname,readDataFlag,hduKeys,extver); currentExtensionName(extname); } else { #ifdef SSTREAM_DEFECT std::ostrstream err; #else std::ostringstream err; #endif err << "Error: Unable to find extension containing keywords "; std::copy(searchKeys.begin(),searchKeys.end(), std::ostream_iterator(err," ")); err << "\nwith required values and version number "; #ifdef SSTREAM_DEFECT err << std::ends; #endif throw NoSuchHDU(err.str()); } } int FITS::open (RWmode mode) { int status=0; // unused: bool silentMode = true; status = fits_open_file(&m_FITSImpl->fptr(), m_FITSImpl->name().c_str(), mode, &status); if (status != 0) { if (status == FILE_NOT_OPENED) throw CantOpen(m_FITSImpl->name()); else throw FitsError(status); } int currentHDU=0; fits_get_hdu_num(m_FITSImpl->fptr(), ¤tHDU); // convert to 0-based currentHDU -= 1; return currentHDU; } bool FITS::create () { int status(0); // if the filename indicates overwrite (starts with a '!' - see // fits_create_file documentation) // or the filename does not correspond to an existing file, create file. // otherwise throw an overwrite exception. // if the file is writeable and the name doesn't begin with '!' // we want read/write access so should use fits_open_file, // otherwise create it. We let cfitsio worry about what // happens if open-with-write-mode or create fails. // but we must know whether the file exists. string fName = m_FITSImpl->name(); if (m_FITSImpl->name()[0] == '!') { m_FITSImpl->name() = fName.substr(1); } // Create a new file, the '!' is processed by ffinit. // If '[]' extended syntax is used this returns an error of // one kind or another (which includes FILE_NOT_CREATED if // the file already exists). fits_create_file(&m_FITSImpl->fptr(),fName.c_str(),&status); if ( status ) { // The open function must succeed, else we're left with // a NULL m_FITSImpl->fptr() with which we can't continue. try { if (status == FILE_NOT_CREATED ) { string warn(" File already exists: "); warn += fName; warn += " attempting to open existing file"; if (verboseMode()) std::cerr << warn << '\n'; open(Write); } else { throw CantCreate(fName); } } catch (FitsException&) { throw; } return false; } return true; } int FITS::close () throw () { int status=0; if (m_FITSImpl == 0) return 0; status = fits_close_file(m_FITSImpl->fptr(), &status); if (!status) m_FITSImpl->fptr() = 0; return status; } const ExtHDU& FITS::extension (int i) const { const ExtMap& ext = m_FITSImpl->extension(); ExtMapConstIt hduByNum = ext.begin(); ExtMapConstIt endOfList = ext.end(); while (hduByNum != endOfList) { if ((*hduByNum).second->index() == i) break; ++hduByNum; } if (hduByNum == endOfList) { #ifdef SSTREAM_DEFECT std::strstream msg; #else std::ostringstream msg; #endif msg << "No HDU with index " << i << '\n'; throw NoSuchHDU(msg.str()); } (*hduByNum).second->makeThisCurrent(); return *((*hduByNum).second); } std::ostream & FITS::put (std::ostream &s) const { s << "FITS:: Primary HDU: \n" ; s << *m_FITSImpl->pHDU() << endl; s << "FITS:: Extensions: \n"; const ExtMap& ext = m_FITSImpl->extension(); ExtMapConstIt endOfList = ext.end(); for (ExtMapConstIt it = ext.begin(); it != endOfList; ++it) s << *((*it).second) << endl; return s; } fitsfile* FITS::fitsPointer () const { return m_FITSImpl->fptr(); } ExtHDU& FITS::extension (int i) { ExtMap& ext = m_FITSImpl->extension(); ExtMapIt hduByNum = ext.begin(); ExtMapIt endOfList = ext.end(); while (hduByNum != endOfList) { if ((*hduByNum).second->index() == i) break; ++hduByNum; } if (hduByNum == endOfList) { #ifdef SSTREAM_DEFECT std:: strstream msg; #else std::ostringstream msg; #endif msg << "No HDU with index " << i; throw NoSuchHDU(msg.str()); } (*hduByNum).second->makeThisCurrent(); return *((*hduByNum).second); } const ExtHDU& FITS::extension (const String& hduName, int version) const { return extbyVersion(hduName,version); } const PHDU& FITS::pHDU () const { return *m_FITSImpl->pHDU(); } PHDU& FITS::pHDU () { return *m_FITSImpl->pHDU(); } ExtHDU& FITS::extbyVersion (const String& hduName, int version) const { // hey! remember it's a multimap and we need to work a little harder! // first, for convenience... // how many extensions with name hduName? ExtMap& ext = m_FITSImpl->extension(); ExtMap::size_type n = ext.count(hduName); if (n == 0) { #ifdef SSTREAM_DEFECT std::strstream msg; #else std::ostringstream msg; #endif msg << "No HDU with name " << hduName; if (version) msg << " and version " << version; throw NoSuchHDU(msg.str()); } // ignore version checking if there is only one version present. ExtMapIt c = ext.lower_bound(hduName); if ( n > 1) { ExtMapIt last = ext.upper_bound(hduName); while ( c != last ) { if ((*c).second->version() == version) break; c++; } if ( c == last ) { #ifdef SSTREAM_DEFECT std::ostrstream msg; #else std::ostringstream msg; #endif msg << "No HDU with name " << hduName; if (version != 1) msg << " and version " << version; #ifdef SSTREAM_DEFECT msg << std::ends; #endif throw NoSuchHDU(msg.str()); } } (*c).second->makeThisCurrent(); return *((*c).second); } void FITS::pHDU (PHDU* value) { m_FITSImpl->pHDU() = value; } void FITS::readExtensions (bool readDataFlag) { HDUCreator create(m_FITSImpl); int status = 0; int numHDUs = 0; if (fits_get_num_hdus(m_FITSImpl->fptr(),&numHDUs,&status) != 0) throw FitsError(status); // Not clearly exception safe : revisit!!! // Unused: ExtHDU* newExt = 0; // there's one less Extension than HDUs. Here, if there are 5 HDUs there are 4 extensions, // and this loop should execute 4 times. HDU index 1 is the first extension, not the primary. for (int i = 1; i < numHDUs ; i++) { addExtension(static_cast(create.getHdu(i,readDataFlag))); create.reset(); } } Table* FITS::addTable (const String& hduName, int rows, const std::vector& columnName, const std::vector& columnFmt, const std::vector& columnUnit, HduType type, int version) { ExtHDU* current(0); size_t N(extension().count(hduName)); std::pair matches(extensionMap().equal_range(hduName)); if ( N > 0 ) { ExtMapIt s(matches.first); while ( s != matches.second ) { current = s->second; if ( current->version() == version && dynamic_cast(current) ) { std::cerr << " Table Extension " << hduName << " with version " << version << " already exists " << " returning token for existing version \n"; } ++s; } } if ( !current ) { HDUCreator newTable(m_FITSImpl); Table* newHDU = static_cast(newTable.createTable(hduName, type, rows, columnName, columnFmt, columnUnit, version)); current = addExtension(newHDU); } return static_cast(current); } ExtHDU* FITS::addImage (const String& hduName, int bpix, std::vector& naxes, int version) { ExtHDU* current(0); size_t N(extension().count(hduName)); std::pair matches(extensionMap().equal_range(hduName)); if ( N > 0 ) { ExtMapIt s(matches.first); while (!current && s != matches.second ) { if ( s->second->version() == version ) { std::cerr << " Extension " << hduName << " with version " << version << " already exists " << " returning token for existing version \n"; current = s->second; } ++s; } } if (!current) { HDUCreator newImage(m_FITSImpl); ExtHDU* newHDU = newImage.createImage(hduName, bpix, naxes.size(), naxes, version); current = addExtension(newHDU); if (getCompressionType()) { if (naxes.size() > m_FITSImpl->currentCompressionTileDim()) { m_FITSImpl->currentCompressionTileDim(naxes.size()); } } } return current; } void FITS::destroy () throw () { // close the file associated with this FITS object if it is open. // close () can't throw because it only calls cfitsio's close function, // so error messages are handled here. // destroyPrimary and destroyExtensions call delete which is guaranteed nothrow, // destroyExtensions also calls multimap::erase close(); // nullify and delete memory allocated for primary HDU pointer // delete memory allocated for Extensions and clear the map. delete m_FITSImpl; // nullify the fitsfile pointer, so that it passes "deallocated" tests // such as: if ( x.fptr() == 0 ) m_FITSImpl = 0; } void FITS::flush () { int status (0); if (fits_flush_file(m_FITSImpl->fptr(),&status)) throw FitsError(status); } const String& FITS::currentExtensionName () const { return m_FITSImpl->currentExtensionName(); } ExtHDU* FITS::addExtension (ExtHDU* ext) { int status(0); const String& extName = ext->name(); ExtMap::value_type addHDUEntry(extName,ext); m_FITSImpl->currentExtensionName() = extName; ExtMapIt added = m_FITSImpl->extension().insert(addHDUEntry); if (fits_set_hdustruc(fitsPointer(),&status)) throw FitsError(status); (*added).second->index(fitsPointer()->HDUposition); return (*added).second; } void FITS::swap (FITS& right) { FITSUtil::swap(m_FITSImpl,right.m_FITSImpl); } const ExtMap& FITS::extension () const { return m_FITSImpl->extension(); } void FITS::resetPosition () { int status(0); if (fits_movabs_hdu(fitsPointer(),1,0,&status)) throw FitsError(status); m_FITSImpl->currentExtensionName() = string(""); } void FITS::currentExtensionName (const String& extName) { m_FITSImpl->currentExtensionName() = extName; } const String& FITS::name () const { return m_FITSImpl->name(); } void FITS::copy (const HDU& source) { int status(0); bool isOK = true; const ExtHDU* testSource = dynamic_cast(&source); if (!testSource) { // If not an ExtHDU, source must be a PHDU. At the moment there's // no way to convert it to an ExtHDU, which is necessary to insert // it into the extension map. std::cerr << "Cannot copy a primary HDU of one file into an extension of another.\n"; return; } HDU* hduCopy = source.clone(m_FITSImpl); std::auto_ptr extCopy(static_cast(hduCopy)); const String& hduName = extCopy->name(); size_t N = extension().count(hduName); std::pair matches(extensionMap().equal_range(hduName)); if ( N > 0 ) { ExtMapIt s(matches.first); while ( s != matches.second ) { ExtHDU* current = s->second; if (current->version() == extCopy->version()) { std::cerr << " Extension " << hduName << " with version " << extCopy->version() << " already exists.\n "; isOK = false; break; } ++s; } } if (isOK) { source.makeThisCurrent(); if (fits_copy_hdu(source.fitsPointer(),fitsPointer(),0,&status)) throw FitsError(status); // the fits file has been updated, although the data have not // been read. addExtension(extCopy.get()); Table* tableCopy = dynamic_cast(extCopy.get()); extCopy.release(); if (!tableCopy) { // Assume this is copying an image if (getCompressionType()) { if (extCopy->axes() > m_FITSImpl->currentCompressionTileDim()) { m_FITSImpl->currentCompressionTileDim(extCopy->axes()); } } } } } Table& FITS::filter (const String& expression, ExtHDU& inputTable, bool overwrite, bool readData) { // there are three cases to deal with: // a) inputHDU belongs to a different file than *this // In this case the selectRows call will simply write to this. // b) inputHDU belongs to *this and // i) outHDUVersion is different from any version key in inputHDU. // ii) outHDUVersion matches the version key in inputHDU or neither // inputHDU has a version key nor outHDUVersion is specified. // In case i) a new HDU with new version is written. // In case ii) the instruction is to overwrite inputHDU with the filtered version. // in this case the HDU is marked as "unread" by deleting it from the list of // HDUs in *this. static char EXTVER[] = "EXTVER"; try { Table& table = dynamic_cast(inputTable); fitsfile* inputFitsPointer = inputTable.fitsPointer() ; FITSUtil::auto_array_ptr pName1(new char[FLEN_FILENAME]); FITSUtil::auto_array_ptr pName2(new char[FLEN_FILENAME]); String tableName = table.name(); int tableVersion(table.version()); char* cExpression = const_cast(expression.c_str()); int status(0); // check if the two file names are the same. Checking the pointers // are the same doesn't allow for the possibility that there are // two views of the same file. if (fits_file_name(inputFitsPointer,pName1.get(),&status)) throw FitsError(status); if (fits_file_name(fitsPointer(),pName2.get(),&status)) throw FitsError(status); const String& infile = String(pName1.get()); const String& outfile = String(pName2.get()); // store list of what has been read so far so it can be read back. std::vector keyStore(table.keyWord().size() + table.column().size()); std::map::const_iterator keyIt(table.keyWord().begin()); std::map::const_iterator keyItEnd(table.keyWord().end()); std::map::const_iterator colIt(table.column().begin()); std::map::const_iterator colItEnd(table.column().end()); size_t count(0); if (!table.keyWord().empty()) { while ( keyIt != keyItEnd ) { keyStore[count] = (*keyIt).first; ++keyIt, ++count; } } if ( !table.column().empty()) { while ( colIt != colItEnd ) { keyStore[count] = (*colIt).first; ++colIt, ++count; } } int revisedVersion(tableVersion); if (infile == outfile) { if (overwrite) { // delete the current HDU from the set of "mapped" // since the contents are being changed. Its header // will be remapped afterward, and if readData is // set to true then the resulting filtered data is // also read back. unmapExtension(inputTable); } else { revisedVersion = nextVersionNumber(tableName); // create a new header from the source and set it to be the // current HDU cloneHeader(inputTable); if (fits_write_key_lng(fitsPointer(),EXTVER,revisedVersion,0,&status)) throw FitsError(status); } if (fits_select_rows(inputFitsPointer,fitsPointer(),cExpression,&status)) throw FitsError(status); if (fits_flush_file(fitsPointer(),&status)) throw FitsError(status); } else { // create a new header from the source and set it to be the // current HDU revisedVersion = nextVersionNumber(tableName); cloneHeader(inputTable); if (fits_select_rows(inputFitsPointer,fitsPointer(),cExpression,&status)) throw FitsError(status); if (fits_write_key_lng(fitsPointer(),EXTVER,revisedVersion,0,&status)) throw FitsError(status); if (fits_flush_file(fitsPointer(),&status)) throw FitsError(status); } HDUCreator create(m_FITSImpl); ExtHDU* readBack = static_cast(create.getHdu(tableName,readData,keyStore, false,revisedVersion)); return static_cast(*addExtension(readBack)); } catch (std::bad_cast) { throw OperationNotSupported(" filtering rows from an image "); } // output } ExtMap& FITS::extensionMap () { return m_FITSImpl->extension(); } ExtHDU& FITS::currentExtension () { // return the current extension. Must have been previously instantiated by // CCfits. int num(0); fits_get_hdu_num(fitsPointer(),&num); // extensions start counting at 1, HDU indices at 2. return extension(num - 1); } String FITS::nameOfUnmapped (int hduNum) const { // return the name of HDUs not yet mapped. static char EXTNAME[] = "EXTNAME"; static char HDUNAME[] = "HDUNAME"; String retVal(""); int current(0); int status(0); fits_get_hdu_num(fitsPointer(),¤t); if (fits_movabs_hdu(fitsPointer(),hduNum,0,&status)) throw FitsError(status); FITSUtil::auto_array_ptr pTestKey(new char[FLEN_VALUE]); char* testKey = pTestKey.get(); if (fits_read_key_str(fitsPointer(),EXTNAME,testKey,0,&status) == 0) { retVal = String(testKey); } else { if (status == KEY_NO_EXIST) { status = 0; fits_read_key_str(fitsPointer(),HDUNAME,testKey,0,&status) ; if (status == 0) { retVal = String(testKey); } else { if (status != KEY_NO_EXIST) throw FitsError(status); } } else { throw FitsError(status); } } if (fits_movabs_hdu(fitsPointer(),current,0,&status)) throw FitsError(status); return retVal; } void FITS::cloneHeader (const ExtHDU& source) { // raw copy header info from source to a new HDU in *this. // first, // check that source is current HDU in whichever file it is source.makeThisCurrent(); fitsfile* sourcePointer = source.fitsPointer(); int nKeys(0); int dum(0); int status(0); // get number of keys in source HDU. // don't care what key will be read next, so keynum argument is dummy. if (fits_get_hdrpos(sourcePointer,&nKeys,&dum,&status)) throw FitsError(status); FITSUtil::auto_array_ptr pCard(new char[FLEN_CARD]); char* card = pCard.get(); // Must copy the keys of the source before creating the new HDU // because one cannot movabs to a raw HDU created by create_hdu: // the required keywords are not there and it returns an error. if (sourcePointer == fitsPointer()) { std::vector cards(nKeys); { for (int j = 1; j <= nKeys; ++j) { if (fits_read_record(sourcePointer,j,card,&status)) throw FitsError(status); cards[j-1] = String(card); } } // fits_create_hdu makes a new HDU and makes it current. if (fits_create_hdu(fitsPointer(),&status)) throw FitsError(status); { for (int j = 1; j <= nKeys; ++j) { if (fits_write_record(fitsPointer(),const_cast(cards[j-1].c_str()),&status)) throw FitsError(status); } } } else { if (fits_create_hdu(fitsPointer(),&status)) throw FitsError(status); for (int j = 1; j <= nKeys; ++j) { if (fits_read_record(sourcePointer,j,card,&status)) throw FitsError(status); if (fits_write_record(fitsPointer(),card,&status)) throw FitsError(status); } } // set the number of rows NAXIS2 in the new HDU back to zero - // it's been raw copied from source. static char ROWS[] = "NAXIS2"; if (fits_update_key_lng(fitsPointer(),ROWS,0,0,&status)) throw FitsError(status); if (fits_flush_file(fitsPointer(),&status)) throw FitsError(status); } void FITS::deleteExtension (int doomed) { int status(0); ExtHDU& d = extension(doomed); // throws NoSuchHDU if it's not there. const int removeIdx = d.index(); std::vector trailingExts; ExtMapConstIt itExtMap = m_FITSImpl->extension().begin(); ExtMapConstIt itExtMapEnd = m_FITSImpl->extension().end(); while (itExtMap != itExtMapEnd) { if (itExtMap->second->index() > removeIdx) trailingExts.push_back(itExtMap->second); ++itExtMap; } if (fits_delete_hdu(fitsPointer(),0,&status)) throw FitsError(status); unmapExtension(d); // Reindex the extensions that follow the deleted. for (size_t i=0; iindex(trailingExts[i]->index()-1); } void FITS::setCompressionType (int compType) { int status = 0; if (fits_set_compression_type(fitsPointer(), compType, &status)) { throw FitsError(status); } } void FITS::setTileDimensions (const std::vector& tileSizes) { int status = 0; int nDim = static_cast(tileSizes.size()); FITSUtil::CVarray converter; FITSUtil::auto_array_ptr pTileSizes(converter(tileSizes)); if (fits_set_tile_dim(fitsPointer(), nDim, pTileSizes.get(), &status)) { throw FitsError(status); } m_FITSImpl->currentCompressionTileDim(nDim); } void FITS::setNoiseBits (int noiseBits) { int status = 0; if (fits_set_noise_bits(fitsPointer(), noiseBits, &status)) { throw FitsError(status); } } int FITS::getCompressionType () const { int compType = 0; int status = 0; if (fits_get_compression_type(fitsPointer(), &compType, &status)) { throw FitsError(status); } return compType; } void FITS::getTileDimensions (std::vector& tileSizes) const { int status = 0; int nDim = m_FITSImpl->currentCompressionTileDim(); tileSizes.resize(nDim); if (nDim) { FITSUtil::auto_array_ptr pTileSizes(new long[nDim]); long* tilesArray = pTileSizes.get(); if (fits_get_tile_dim(fitsPointer(), nDim, tilesArray, &status)) { throw FitsError(status); } std::copy(&tilesArray[0], &tilesArray[nDim], &tileSizes[0]); } } int FITS::getNoiseBits () const { int noiseBits = 0; int status = 0; if (fits_get_noise_bits(fitsPointer(), &noiseBits, &status)) { throw FitsError(status); } return noiseBits; } ExtHDU* FITS::checkAlreadyRead(const int hduIdx, const String& hduName, const int version) const throw() { // See header for description. ExtHDU* found=0; const ExtMap& extMap = m_FITSImpl->extension(); if (hduIdx) { ExtMapConstIt itMap = extMap.begin(); const ExtMapConstIt itMapEnd = extMap.end(); while (!found && itMap != itMapEnd) { if (itMap->second->index() == hduIdx) found = itMap->second; ++itMap; } } else { const std::pair rangePair = extMap.equal_range(hduName); // Note itRange is not a reference but a copy. We may want // to keep rangePair.first for later use. ExtMapConstIt itRange = rangePair.first; const ExtMapConstIt& itRangeEnd = rangePair.second; while (!found && itRange != itRangeEnd) { if (itRange->second->version() == version) found = itRange->second; ++itRange; } // This really shouldn't be needed in a well-structured FITS file, but // IF extension w/hduName exists, caller is requesting version 1, yet // no version 1 is found, THEN treat it as "return first found extension // w/name". This is mostly for backwards compatibility since I noticed // earlier read(hduName) function code was doing this. if (!found && version == 1 && rangePair.first != itRangeEnd) { found = rangePair.first->second; } } return found; } // Additional Declarations } // namespace CCfits CCfits/FITSBase.cxx0000644000225700000360000000245611470265345013621 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman // PHDU #include "PHDU.h" // ExtHDU #include "ExtHDU.h" // FITSBase #include "FITSBase.h" // FITSUtil #include "FITSUtil.h" namespace CCfits { typedef std::multimap ExtMap; typedef std::multimap::iterator ExtMapIt; typedef std::multimap::const_iterator ExtMapConstIt; // Class CCfits::FITSBase FITSBase::FITSBase (const String& fileName, RWmode rwmode) : m_currentCompressionTileDim(0), m_mode(rwmode), m_currentExtensionName(""), m_name(fileName), m_pHDU(0), m_fptr(0), m_extension() { } FITSBase::~FITSBase() { destroyPrimary(); destroyExtensions(); int status=0; if (m_fptr) { fits_close_file(m_fptr, &status); } } void FITSBase::destroyPrimary () { delete m_pHDU; m_pHDU = 0; } void FITSBase::destroyExtensions () { ExtMapIt endList = m_extension.end(); for (ExtMapIt hdu = m_extension.begin(); hdu != endList; hdu++) { delete (*hdu).second; } m_extension.clear(); } // Additional Declarations } // namespace CCfits CCfits/FITSUtil.cxx0000644000225700000360000004250611470265345013664 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifdef _MSC_VER #include "MSconfig.h" // for truncation warning #endif // FITSUtil #include "FITSUtil.h" #include "FitsError.h" #include "FITS.h" #include #include #include using std::string; namespace CCfits { const unsigned long USBASE = 1 << 15; const unsigned long ULBASE = (unsigned long)1 << 31; namespace FITSUtil { InvalidConversion::InvalidConversion (const string& diag, bool silent) : FitsException(string("Fits Error: Attempt to perform invalid implicit conversion "),silent) { addToMessage(diag); if (FITS::verboseMode() || !silent) std::cerr << diag << '\n'; } char** CharArray (const std::vector& inArray) { size_t n = inArray.size(); if (n == 0) return 0; char** c = new char*[n]; for (size_t i = 0; i < n; ++i) { size_t m(inArray[i].length()); c[i] = new char[m+1]; strncpy(c[i],inArray[i].c_str(),m + 1); } return c; } #if TEMPLATE_AMBIG_DEFECT || TEMPLATE_AMBIG7_DEFECT void fillMSvsvs (std::vector& outArray, const std::vector& inArray, size_t first, size_t last) { // recall behavior of iterators: last has to be one-past-the-last entry. // if last == first, this will still do something. the "first-1" is a zero based indexing // correction. outArray.assign(inArray.begin()+first-1,inArray.begin()+last); } #endif void fill (std::vector& outArray, const std::vector& inArray, size_t first, size_t last) { // recall behavior of iterators: last has to be one-past-the-last entry. // if last == first, this will still do something. the "first-1" is a zero based indexing // correction. outArray.assign(inArray.begin()+first-1,inArray.begin()+last); } string lowerCase(const string& inputString) { const size_t n(inputString.length()); string outputString(n,' '); for (size_t l = 0 ; l < n; ++l) { outputString[l] = tolower(inputString[l]); } return outputString; } string upperCase(const string& inputString) { const size_t n(inputString.length()); string outputString(n,' '); for (size_t l = 0 ; l < n; ++l) { outputString[l] = toupper(inputString[l]); } return outputString; } string::size_type checkForCompressString(const string& fileName) { // Simply look for the first occurrence of the form "[compress....". const string leadIndicator("[compress"); string::size_type start = fileName.find(leadIndicator); return start; } string FITSType2String ( int typeInt ) { string keyString(""); switch (typeInt) { default: case Tnull: keyString = "Unknown"; break; case Tbit: keyString = "bit"; break; case Tbyte: keyString = "byte"; break; case Tlogical: keyString = "logical"; break; case Tstring: keyString = "string"; break; case Tushort: keyString = "unsigned short"; break; case Tshort: keyString = "short"; break; case Tuint: keyString = "unsigned integer"; break; case Tint: keyString = "integer"; break; case Tulong: keyString = "unsigned long"; break; case Tlong: keyString = "long"; break; case Tlonglong: keyString = "long long"; case Tfloat: keyString = "float"; break; case Tdouble: keyString = "double"; break; case Tcomplex: keyString = "float complex"; break; case Tdblcomplex: keyString = "double complex"; break; } return keyString; } bool MatchStem::operator()(const string& left, const string& right) const { static const string DIGITS("0123456789"); size_t n(left.find_last_not_of(DIGITS)); if ( n != string::npos ) return (left.substr(0,n) == right); else return (left == right); } // VF<-VF #ifdef TEMPLATE_AMBIG_DEFECT void fillMSvfvf(std::vector >& outArray, const std::vector >& inArray, size_t first, size_t last) { // vector to vector assign. stdlib takes care of deletion. size_t range = last - first + 1; if (outArray.size() != range) outArray.resize(range); for (size_t j = first - 1; j < last; ++j) { outArray[j - first + 1] = inArray[j]; } } #else void fill(std::vector >& outArray, const std::vector >& inArray, size_t first, size_t last) { // vector to vector assign. stdlib takes care of deletion. size_t range = last - first + 1; if (outArray.size() != range) outArray.resize(range); for (size_t j = first - 1; j < last; ++j) { outArray[j - first + 1] = inArray[j]; } } #endif #ifdef TEMPLATE_AMBIG_DEFECT // VF<-VD void fillMSvfvd(std::vector >& outArray, const std::vector >& inArray, size_t first, size_t last) { // vector to vector assign. stdlib takes care of deletion. size_t range = last - first + 1; if (outArray.size() != range) outArray.resize(range); for (size_t j = first - 1; j < last; ++j) { outArray[j - first + 1] = std::complex(inArray[j].real(), inArray[j].imag()); } } #else // VF<-VD void fill(std::vector >& outArray, const std::vector >& inArray, size_t first, size_t last) { // vector to vector assign. stdlib takes care of deletion. size_t range = last - first + 1; if (outArray.size() != range) outArray.resize(range); for (size_t j = first - 1; j < last; ++j) { outArray[j - first + 1] = std::complex(inArray[j].real(), inArray[j].imag()); } } #endif // VD<-VD #ifdef TEMPLATE_AMBIG_DEFECT void fillMSvdvd(std::vector >& outArray, const std::vector >& inArray, size_t first, size_t last) { // vector to vector assign. stdlib takes care of deletion. size_t range = last - first + 1; if (outArray.size() != range) outArray.resize(range); for (size_t j = first - 1; j < last; ++j) { outArray[j - first + 1] = inArray[j]; } } #else void fill(std::vector >& outArray, const std::vector >& inArray, size_t first, size_t last) { // vector to vector assign. stdlib takes care of deletion. size_t range = last - first + 1; if (outArray.size() != range) outArray.resize(range); for (size_t j = first - 1; j < last; ++j) { outArray[j - first + 1] = inArray[j]; } } #endif // VD<-VF #ifdef TEMPLATE_AMBIG_DEFECT void fillMSvdvf(std::vector >& outArray, const std::vector >& inArray, size_t first, size_t last) { // vector to vector assign. stdlib takes care of deletion. size_t range = last - first + 1; if (outArray.size() != range) outArray.resize(range); for (size_t j = first - 1; j < last; ++j) { outArray[j - first + 1] = std::complex(inArray[j].real(), inArray[j].imag()); } } #else void fill(std::vector >& outArray, const std::vector >& inArray, size_t first, size_t last) { // vector to vector assign. stdlib takes care of deletion. size_t range = last - first + 1; if (outArray.size() != range) outArray.resize(range); for (size_t j = first - 1; j < last; ++j) { outArray[j - first + 1] = std::complex(inArray[j].real(), inArray[j].imag()); } } #endif // AF<-VF // AF<-VF #ifdef TEMPLATE_AMBIG_DEFECT void fillMSafvf(std::valarray >& outArray, const std::vector >& inArray, size_t first, size_t last) { // vector to vector assign. stdlib takes care of deletion. size_t range = last - first + 1; if (outArray.size() != range) outArray.resize(range); for (size_t j = first - 1; j < last; ++j) { outArray[j - first + 1 ] = inArray[j]; } } #else void fill(std::valarray >& outArray, const std::vector >& inArray, size_t first, size_t last) { // vector to vector assign. stdlib takes care of deletion. size_t range = last - first + 1; if (outArray.size() != range) outArray.resize(range); for (size_t j = first - 1; j < last; ++j) { outArray[j - first + 1 ] = inArray[j]; } } #endif // AF<-VD void fill(std::valarray >& outArray, const std::vector >& inArray, size_t first, size_t last) { // vector to vector assign. stdlib takes care of deletion. size_t range = last - first + 1; if (outArray.size() != range) outArray.resize(range); for (size_t j = first - 1; j < last; ++j) { outArray[j - first + 1 ] = std::complex(inArray[j].real(),inArray[j].imag()); } } // AD<-VD #ifdef TEMPLATE_AMBIG_DEFECT void fillMSadvd(std::valarray >& outArray, const std::vector >& inArray, size_t first, size_t last) { // vector to vector assign. stdlib takes care of deletion. size_t range = last - first + 1; if (outArray.size() != range) outArray.resize(range); for (size_t j = first - 1; j < last; ++j) { outArray[j - first + 1] = inArray[j]; } } #else void fill(std::valarray >& outArray, const std::vector >& inArray, size_t first, size_t last) { // vector to vector assign. stdlib takes care of deletion. size_t range = last - first + 1; if (outArray.size() != range) outArray.resize(range); for (size_t j = first - 1; j < last; ++j) { outArray[j - first + 1] = inArray[j]; } } #endif // AD<-VF #ifdef TEMPLATE_AMBIG_DEFECT void fillMSadvf(std::valarray >& outArray, const std::vector >& inArray, size_t first, size_t last) { // vector to vector assign. stdlib takes care of deletion. size_t range = last - first + 1; if (outArray.size() != range) outArray.resize(range); for (size_t j = first - 1; j < last; ++j) { outArray[j - first + 1 ] = std::complex(inArray[j].real(),inArray[j].imag()); } } #else void fill(std::valarray >& outArray, const std::vector >& inArray, size_t first, size_t last) { // vector to vector assign. stdlib takes care of deletion. size_t range = last - first + 1; if (outArray.size() != range) outArray.resize(range); for (size_t j = first - 1; j < last; ++j) { outArray[j - first + 1 ] = std::complex(inArray[j].real(),inArray[j].imag()); } } #endif // AF<-AF void fill(std::valarray >& outArray, const std::valarray >& inArray) { // vector to vector assign. stdlib takes care of deletion. size_t N (inArray.size()); if (outArray.size() != N) outArray.resize(N); outArray = inArray; } // AD<-AD void fill(std::valarray >& outArray, const std::valarray >& inArray) { // vector to vector assign. stdlib takes care of deletion. size_t N (inArray.size()); if (outArray.size() != N) outArray.resize(N); outArray = inArray; } // AF<-AD void fill(std::valarray >& outArray, const std::valarray >& inArray) { // vector to vector assign. stdlib takes care of deletion. size_t N (inArray.size()); if (outArray.size() != N) outArray.resize(N); for (size_t j = 0; j < N; ++j ) { outArray[j] = std::complex(inArray[j].real(),inArray[j].imag()); } } // AD<-AF void fill(std::valarray >& outArray, const std::valarray >& inArray) { // vector to vector assign. stdlib takes care of deletion. size_t N (inArray.size()); if (outArray.size() != N) outArray.resize(N); for (size_t j = 0; j < N; ++j ) { outArray[j] = std::complex(inArray[j].real(),inArray[j].imag()); } } // VF<-AF void fill(std::vector >& outArray, const std::valarray >& inArray) { // vector to vector assign. stdlib takes care of deletion. size_t N (inArray.size()); if (outArray.size() != N) outArray.resize(N); for (size_t j = 0; j < N; ++j) outArray[j] = inArray[j]; } // VD<-AD void fill(std::vector >& outArray, const std::valarray >& inArray) { // vector to vector assign. stdlib takes care of deletion. size_t N (inArray.size()); if (outArray.size() != N) outArray.resize(N); for (size_t j = 0; j < N; ++j) outArray[j] = inArray[j]; } // VF<-AD void fill(std::vector >& outArray, const std::valarray >& inArray) { // vector to vector assign. stdlib takes care of deletion. size_t N (inArray.size()); if (outArray.size() != N) outArray.resize(N); for (size_t j = 0; j < N; ++j ) { outArray[j] = std::complex(inArray[j].real(),inArray[j].imag()); } } // VD<-AF void fill(std::vector >& outArray, const std::valarray >& inArray) { // vector to vector assign. stdlib takes care of deletion. size_t N (inArray.size()); if (outArray.size() != N) outArray.resize(N); for (size_t j = 0; j < N; ++j ) { outArray[j] = std::complex(inArray[j].real(),inArray[j].imag()); } } // Parameterized Class CCfits::FITSUtil::FitsNullValue // Class CCfits::FITSUtil::UnrecognizedType UnrecognizedType::UnrecognizedType (string diag, bool silent) : FitsException(" Invalid type for FITS I/O ",silent) { addToMessage(diag); std::cerr << diag << '\n'; } } // namespace FITSUtil } // namespace CCfits CCfits/FitsError.cxx0000644000225700000360000000316211470265345014173 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifdef _MSC_VER #include "MSconfig.h" // for truncation warning #include #endif // FITS #include "FITS.h" // FitsError #include "FitsError.h" namespace CCfits { // Class CCfits::FitsError FitsError::FitsError (int errornum, bool silent) : FitsException("FITS Error: ", silent) { printMsg(errornum); if (FITS::verboseMode() || !silent) std::cerr << message() << "\n"; } void FitsError::printMsg (int error) { char cMessage[FLEN_ERRMSG]; fits_get_errstatus(error, cMessage); addToMessage(string(cMessage)); } // Class CCfits::FitsException FitsException::FitsException (const string& msg, bool& silent) : m_message(msg) { if (FITS::verboseMode() || !silent) { std::cerr << '\n' << msg; // set this to false for the purpose of this exception. // does NOT change verbose mode setting so this value is thrown // away after the exception completes. silent = false; } } void FitsException::addToMessage (const string& msgQual) { m_message += msgQual; } // Class CCfits::FitsFatal FitsFatal::FitsFatal (const string& diag) { std::cerr << "*** CCfits Fatal Error: " << diag << " please report this to xanprob@olegacy.gsfc.nasa.gov\n"; #ifdef TERMINATE_DEFECT // terminate() is not there as documented assert ( false ); #else std::terminate(); #endif } } // namespace CCfits CCfits/HDU.cxx0000644000225700000360000004714711470265345012707 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifdef _MSC_VER #include "MSconfig.h" // for truncation warning #endif #ifdef HAVE_CONFIG_H #include "config.h" #endif #ifdef SSTREAM_DEFECT #include #else #include #endif #include #include // FITS #include "FITS.h" // FITSBase #include "FITSBase.h" // HDU #include "HDU.h" #include "FITSUtil.h" #include namespace CCfits { // TYP_* are defined in fitsio.h const size_t HDU::s_nCategories = 5; const int HDU::s_iKeywordCategories[5] = {TYP_USER_KEY,TYP_WCS_KEY,TYP_CMPRS_KEY,TYP_CKSUM_KEY,TYP_REFSYS_KEY}; // Class CCfits::HDU::InvalidImageDataType HDU::InvalidImageDataType::InvalidImageDataType (const string& diag, bool silent) : FitsException("Fits Error: Invalid Data Type for Image ",silent) { addToMessage(diag); if (!silent) std::cerr << diag << '\n'; } // Class CCfits::HDU::InvalidExtensionType HDU::InvalidExtensionType::InvalidExtensionType (const string& diag, bool silent) : FitsException ("Fits Error: Extension Type: ", silent) { addToMessage(diag); if (!silent) std::cerr << diag << '\n'; } // Class CCfits::HDU::NoSuchKeyword HDU::NoSuchKeyword::NoSuchKeyword (const string& diag, bool silent) : FitsException("Fits Error: Keyword not found: ",silent) { addToMessage(diag); if (!silent || FITS::verboseMode()) std::cerr << diag << '\n'; } // Class CCfits::HDU::NoNullValue HDU::NoNullValue::NoNullValue (const string& diag, bool silent) : FitsException("Fits Error: No Null Pixel Value specified for Image ",silent) { addToMessage(diag); if (!silent || FITS::verboseMode() ) std::cerr << diag << '\n'; } // Class CCfits::HDU HDU::HDU(const HDU &right) : m_naxis(right.m_naxis), m_bitpix(right.m_bitpix), m_index(right.m_index), m_anynul(right.m_anynul), m_history(right.m_history), m_comment(right.m_comment), m_zero(right.m_zero), m_scale(right.m_scale), m_keyWord(), m_parent(right.m_parent), m_naxes(right.m_naxes) { // ensure deep copy. copyKeys(right); } HDU::HDU (FITSBase* p) : m_naxis(0), m_bitpix(8), m_index(0), m_anynul(false), m_history(""), m_comment(""), m_zero(0), m_scale(1.0), m_keyWord(), m_parent(p), m_naxes() { readHduInfo(); // read bitpix, naxis and naxes keywords int hduIndex = 0; fits_get_hdu_num(fitsPointer(), &hduIndex); m_index = hduIndex - 1; } HDU::HDU (FITSBase* p, int bitpix, int naxis, const std::vector& axes) : m_naxis(naxis), m_bitpix(bitpix), m_index(0), m_anynul(false), m_history(""), m_comment(""), m_zero(0), m_scale(1.0), m_keyWord(), m_parent(p), m_naxes(axes) { } HDU::~HDU() { // garbage collection for heap allocated objects. clearKeys(); } bool HDU::operator==(const HDU &right) const { return compare(right); } bool HDU::operator!=(const HDU &right) const { return !compare(right); } void HDU::clearKeys () { for (std::map::iterator key = m_keyWord.begin(); key != m_keyWord.end(); ++key) { delete (*key).second; } m_keyWord.erase(m_keyWord.begin(),m_keyWord.end()); } void HDU::readHduInfo () { // Read BITPIX and NAXIS keywords int status = 0; char* comment = 0; int htype = -1; if (fits_get_hdu_type(fitsPointer(),&htype,&status)) throw FitsError(status); HduType xtype = HduType(htype); if (xtype == ImageHdu) { // Do not try and read BITPIX or NAXIS directly. If this is a // compressed image, the relevant information will need to come // from ZBITPIX and ZNAXIS instead. int temp = 0; if (fits_get_img_type(fitsPointer(), &temp, &status)) throw FitsError(status); m_bitpix = temp; if (fits_get_img_dim(fitsPointer(), &temp, &status)) throw FitsError(status); m_naxis = temp; } else { // m_bitpix will retain its default value, 8. string keyname("NAXIS"); if (fits_read_key_lng(fitsPointer(),const_cast(keyname.c_str()), &m_naxis, comment, &status)) throw FitsError(status); } // okay, we have the number of axes and therefore the number of values // (z)NAXISn. FITSUtil::auto_array_ptr axes(new long[m_naxis]); long* pAxes = axes.get(); if (xtype == ImageHdu) { if (fits_get_img_size(fitsPointer(), m_naxis, pAxes, &status)) throw FitsError(status); } else { // create strings NAXIS1 - NAXISn, where n = NAXIS, and read keyword. for (int i=0; i (axisKey.str().c_str()), &pAxes[i],comment,&status) ) throw FitsError(status); #endif } } std::copy(&pAxes[0],&pAxes[m_naxis], std::back_inserter(m_naxes)); } Keyword& HDU::readKeyword (const String &keyname) { try { using std::pair; Keyword* newKey(KeywordCreator::getKeyword(keyname,this)); std::map::value_type refToEntry(keyname,newKey); std::map::iterator itOld = m_keyWord.find(keyname); if (itOld != m_keyWord.end()) { delete itOld->second; m_keyWord.erase(itOld); } m_keyWord.insert(refToEntry); return *(refToEntry.second); } catch (FitsError) { throw NoSuchKeyword(keyname); } } void HDU::readKeywords (std::list& keynames) { // the scoop is: this and the previous function - which reads // a single key - are designed to be called by HDU and its subclasses // in constructors etc., and by the public member functions // addKey, readKey and readKeys. These functions read keywords // and either return nothing or return Keyword references from which another // function call is necessary to retrieve the value. These are both things // that implementers need but are not necessary to provide for the user. std::list::iterator ikey = keynames.begin(); while ( ikey != keynames.end()) { try { readKeyword(*ikey); ++ikey; } catch (NoSuchKeyword) { ikey = keynames.erase(ikey); } } } Keyword* HDU::addKeyword (Keyword* newKey) { using std::pair; newKey->write(); const String& keyname = newKey->name(); std::map::value_type refToEntry(keyname,newKey); std::map::iterator itOld = m_keyWord.find(keyname); if (itOld != m_keyWord.end()) { delete itOld->second; m_keyWord.erase(itOld); } m_keyWord.insert(refToEntry); return refToEntry.second; } bool HDU::compare (const HDU &right) const { if (fitsPointer() != right.fitsPointer()) return false; if (m_index != right.m_index) return false; return true; } fitsfile* HDU::fitsPointer () const { return m_parent->fptr(); } FITSBase* HDU::parent () const { return m_parent; } void HDU::makeThisCurrent () const { int status = 0; int hduType = 0; // m_index contains the value of fptr->Fptr->curhdu. movabs_hdu moves to // 1 - this unless it's at the beginning, so it must be m_index+1 [Check!!!] if (fits_movabs_hdu(fitsPointer(),m_index+1, &hduType, &status) != 0) throw FitsError(status); m_parent->currentExtensionName() = ""; } void HDU::copyKeys (const HDU& right) { // copy all keys that have already been read. for (std::map::const_iterator key = right.m_keyWord.begin(); key != right.m_keyWord.end(); key++) { std::map::iterator itOld = m_keyWord.find(key->first); if (itOld != m_keyWord.end()) { delete itOld->second; m_keyWord.erase(itOld); } m_keyWord[(*key).first] = ((*key).second)->clone(); } } String HDU::getNamedLines (const String& name) { int fitsStatus = 0; int numKeys = 0; static char searchKey[FLEN_KEYWORD]; makeThisCurrent(); String content(""); char* card = new char[81]; FITSUtil::auto_array_ptr pcard(card); int where = 1; int keylen = 0; fits_get_hdrpos(fitsPointer(),&numKeys,&where,&fitsStatus); if (fitsStatus != 0 ) throw FitsError(fitsStatus,false); // search through the header to get the first "name" keyword. while ( where < numKeys ) { fits_read_record(fitsPointer(),++where,card,&fitsStatus); fits_get_keyname(card,searchKey,&keylen,&fitsStatus); // on FitsError, always print a message (!silent). if (fitsStatus != 0 ) throw FitsError(fitsStatus,false); // require exact match if (strcmp(name.c_str(),searchKey) == 0) { // this should work for standard compliant // string implementation, where the length added // to content is determined by traits::length() content += card + 8; content += "\n"; } } // print a message if there are no "name" type records. if (content.size() == 0) throw NoSuchKeyword(name); return content; } const String& HDU::getComments () { try { m_comment = getNamedLines("COMMENT"); } catch (HDU::NoSuchKeyword) {} catch (FitsError) {} catch (...) { throw; } return m_comment; } void HDU::writeComment (const String& comment) { int status(0); makeThisCurrent(); if (fits_write_comment(fitsPointer(),const_cast(comment.c_str()),&status)) throw FitsError(status); m_comment = comment; } const String& HDU::getHistory () { try { m_history = getNamedLines("HISTORY"); } catch (HDU::NoSuchKeyword) {} catch (FitsError) {} catch (...) { throw; } return m_history; } void HDU::writeHistory (const String& history) { int status(0); makeThisCurrent(); if (fits_write_history(fitsPointer(),const_cast(history.c_str()),&status)) throw FitsError(status); m_history = history; } void HDU::writeDate () { static const String DATE("DATE"); int status(0); makeThisCurrent(); if (fits_write_date(fitsPointer(),&status)) throw FitsError(status); FITSUtil::auto_array_ptr pDate(new char[FLEN_KEYWORD]); FITSUtil::auto_array_ptr pDateComment(new char[FLEN_COMMENT]); char* date = pDate.get(); if (fits_read_key_str(fitsPointer(), const_cast(DATE.c_str()),date,pDateComment.get(),&status)) throw FitsError(status); NewKeyword creator(this,String(date)); Keyword* newKey = creator.MakeKeyword(DATE,String(pDateComment.get())); std::map::iterator itOld = m_keyWord.find(DATE); if (itOld != m_keyWord.end()) { delete itOld->second; m_keyWord.erase(itOld); } m_keyWord[DATE] = newKey; } void HDU::suppressScaling (bool toggle) { makeThisCurrent(); int status=0; if (toggle) { // Ignore scale keyword values and replace with defaults. fits_set_bscale(m_parent->fptr(), 1.0, 0.0, &status); } else { // Restore the use of the scale keyword values by re-reading // the header keywords. fits_set_hdustruc(m_parent->fptr(), &status); } } void HDU::writeChecksum () { fitsfile *fPtr = m_parent->fptr(); makeThisCurrent(); int status=0; if (fits_write_chksum(fPtr, &status)) throw FitsError(status); } void HDU::updateChecksum () { fitsfile *fPtr = m_parent->fptr(); makeThisCurrent(); int status=0; if (fits_update_chksum(fPtr, &status)) throw FitsError(status); } std::pair HDU::verifyChecksum () const { std::pair sumsOK(0,0); // Note that within this const function m_parent is a const // pointer but not a pointer-to-const, which is how we can // get away with this. fitsfile *fPtr = m_parent->fptr(); makeThisCurrent(); int status=0; if (fits_verify_chksum(fPtr, &sumsOK.first, &sumsOK.second, &status)) throw FitsError(status); return sumsOK; } std::pair HDU::getChecksum () const { std::pair sums(0,0); fitsfile *fPtr = m_parent->fptr(); makeThisCurrent(); int status=0; if (fits_get_chksum(fPtr, &sums.first, &sums.second, &status)) throw FitsError(status); return sums; } void HDU::deleteKey (const String& doomed) { Keyword& k = keyWord(doomed); //throws no such keyword if there isn't. int status(0); if (fits_delete_key(fitsPointer(),const_cast(k.name().c_str()),&status)) throw FitsError(status); std::map::iterator ki(m_keyWord.find(doomed)); delete (*ki).second; m_keyWord.erase(ki); } void HDU::readAllKeys () { makeThisCurrent(); int status(0); int n (0); int dum(0); if (fits_get_hdrpos(fitsPointer(),&n,&dum,&status)) throw FitsError(status); for (int j = 1; j <= n; ++j) { // If the reading of a particular keyword fails, most likely due // to an undefined value, simply skip and continue to next // keyword. try { // get keywords by header position and store all the keys that // are neither metadata for columns nor history/comment cards. std::auto_ptr key(KeywordCreator::getKeyword(j,this)); // comment/history cards have no value field and return 0 here. if (key.get() != 0) { int keyClass = fits_get_keyclass(const_cast(key->name().c_str())); for (size_t i=0; i::const_iterator itInKeys = inHdu->keyWord().begin(); std::map::const_iterator itInKeysEnd = inHdu->keyWord().end(); while (itInKeys != itInKeysEnd) { // User may have read structure-related keys that normally shouldn't // go into keyWord map. Therefore check each key before copying it. int keyClass = fits_get_keyclass(const_cast(itInKeys->first.c_str())); for (size_t i=0; isecond); break; } } ++itInKeys; } } } std::vector HDU::keywordCategories () { // This is not the most efficient way to grant public access to // the category int[], but it seems better than storing // a static vector in addition to the int[]. std::vector tmpCategories(&s_iKeywordCategories[0], &s_iKeywordCategories[s_nCategories]); // DO NOT return by reference. return tmpCategories; } void HDU::zeroInit (double value) { // This is a private counterpart to the public bzero set functions. // It does not check whether this setting would cause a change // in the data type of the image, since presumably it is only // called immediately after this object is first created in // HDUCreator. It also does not write a keyword since it is // called either for case of pre-existing HDU (which already // has its keyword) or new unsigned-type HDU, in which case // CFITSIO fits_create_img automatically sets the keyword. m_zero = value; } void HDU::scaleInit (double value) { // See notes in zeroInit function. m_scale = value; } bool HDU::checkImgDataTypeChange (double zero, double scale) const { // This ASSUMES this is an image hdu and is also the current hdu. // Return false if the new zero/scale will cause a change from // a non-float/double to a float/double type. bool isOK = true; if (m_bitpix != FLOAT_IMG && m_bitpix != DOUBLE_IMG) { // Save original state of zero/scale keywords bool isZeroKey = true; bool isScaleKey = true; double savZero = 0.0; double savScale = 1.0; int status = 0; fitsfile* fp = m_parent->fptr(); if (fits_read_key_dbl(fp, BZERO, &savZero, 0, &status)) { isZeroKey = false; savZero = 0.0; status = 0; } if (fits_read_key_dbl(fp, BSCALE, &savScale, 0, &status)) { isScaleKey = false; savScale = 1.0; status = 0; } if (fits_update_key(fp, Tdouble, BZERO, &zero, 0, &status)) { throw FitsError(status, false); } if (fits_update_key(fp, Tdouble, BSCALE, &scale, 0, &status)) { int iErr = status; status = 0; if (isZeroKey) fits_update_key(fp, Tdouble, BZERO, &savZero, 0, &status); else fits_delete_key(fp, BZERO, &status); throw FitsError(iErr, false); } int newBitpix=0; fits_get_img_equivtype(fp, &newBitpix, &status); if (status || newBitpix == FLOAT_IMG || newBitpix == DOUBLE_IMG) { isOK = false; } int iErr = status; status = 0; // Now reset things back the way they were, whether or not there // was a status error above. if (isZeroKey) fits_update_key(fp, Tdouble, BZERO, &savZero, 0, &status); else fits_delete_key(fp, BZERO, &status); if (isScaleKey) fits_update_key(fp, Tdouble, BSCALE, &savScale, 0, &status); else fits_delete_key(fp, BSCALE, &status); if (iErr) throw FitsError(iErr, false); } return isOK; } // Additional Declarations Keyword& HDU::addKey(const string& name, const char* charString, const String& comment) { return addKey(name,String(charString),comment); } Keyword* HDU::addKey(const Keyword* inKeyword) { Keyword* newKeyword = inKeyword->clone(); newKeyword->setParent(this); makeThisCurrent(); const String& keyname = newKeyword->name(); std::map::value_type refToEntry(keyname,newKeyword); std::map::iterator itOld = m_keyWord.find(keyname); if (itOld != m_keyWord.end()) { delete itOld->second; m_keyWord.erase(itOld); } m_keyWord.insert(refToEntry); newKeyword->write(); return newKeyword; } } // namespace CCfits CCfits/HDUCreator.cxx0000644000225700000360000003370111666220050014205 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifdef _MSC_VER #include "MSconfig.h" //for truncation warning #endif #ifdef HAVE_CONFIG_H #include "config.h" #endif #ifdef SSTREAM_DEFECT #include #else #include #endif #include // HDU #include "HDU.h" // PHDU #include "PHDU.h" // ExtHDU #include "ExtHDU.h" // FitsError #include "FitsError.h" // FITSBase #include "FITSBase.h" // ImageExt #include "ImageExt.h" // HDUCreator #include "HDUCreator.h" // PrimaryHDU #include "PrimaryHDU.h" // AsciiTable #include "AsciiTable.h" // BinTable #include "BinTable.h" // FITS #include "FITS.h" namespace CCfits { char BSCALE[7] = {"BSCALE"}; char BZERO[6] = {"BZERO"}; // Class CCfits::HDUCreator HDUCreator::HDUCreator (FITSBase* p) : m_hdu(0), m_parent(p) { } HDUCreator::~HDUCreator() { } PHDU * HDUCreator::createImage (int bitpix, long naxis, const std::vector& naxes) { return MakeImage(bitpix,naxis,naxes); } PHDU * HDUCreator::MakeImage (int bpix, int naxis, const std::vector& naxes) { m_hdu = m_parent->pHDU(); if (!m_hdu) { switch (bpix) { case BYTE_IMG: m_hdu = new PrimaryHDU(m_parent,bpix,naxis,naxes); break; case SHORT_IMG: m_hdu = new PrimaryHDU(m_parent,bpix,naxis,naxes); break; case LONG_IMG: m_hdu = new PrimaryHDU(m_parent,bpix,naxis,naxes); break; case FLOAT_IMG: m_hdu = new PrimaryHDU(m_parent,bpix,naxis,naxes); break; case DOUBLE_IMG: m_hdu = new PrimaryHDU(m_parent,bpix,naxis,naxes); break; case USHORT_IMG: m_hdu = new PrimaryHDU(m_parent,bpix,naxis,naxes); m_hdu->bitpix(SHORT_IMG); m_hdu->zeroInit(USBASE); break; case ULONG_IMG: m_hdu = new PrimaryHDU(m_parent,bpix,naxis,naxes); m_hdu->bitpix(LONG_IMG); m_hdu->zeroInit(ULBASE); break; default: throw HDU::InvalidImageDataType("FitsError: invalid data type for FITS I/O"); } } return static_cast(m_hdu); } HDU * HDUCreator::Make (const String& hduName, bool readDataFlag, const std::vector &keys, bool primary, int version) { int status = 0; bool isExtFound = true; int extNum = -1; // Are we dealing with a fake hduName ? bool isFake = hduName.find(ExtHDU::missHDU()) == 0 && hduName.length() > ExtHDU::missHDU().length(); if (isFake) { #ifdef SSTREAM_DEFECT std::istrstream extNumStr (hduName.substr(ExtHDU::missHDU().length().c_str())); #else std::istringstream extNumStr (hduName.substr(ExtHDU::missHDU().length())); #endif extNumStr >> extNum; if (fits_movabs_hdu(m_parent->fptr(), extNum+1, 0, &status)) { isExtFound = false; } } else if ( !primary && fits_movnam_hdu(m_parent->fptr(),ANY_HDU, const_cast(hduName.c_str()),version,&status) ) { isExtFound = false; } if (!isExtFound) { #ifdef SSTREAM_DEFECT std::ostrstream msg; #else std::ostringstream msg; #endif msg << "Cannot access HDU name "; if (isFake) { msg << "(No name) " << "Index no. " << extNum; } else { msg << hduName ; } if (version) msg << " version " << version; #ifdef SSTREAM_DEFECT msg << std::ends; #endif throw FITS::NoSuchHDU(msg.str()); } return commonMake(hduName, readDataFlag, keys, primary, version); } // end Make HDU* HDUCreator::commonMake(const String& hduName, bool readDataFlag, const std::vector &keys, bool primary, int version) { int status = 0; long imgType = 0; int htype = -1; if ( fits_get_hdu_type(m_parent->fptr(),&htype,&status) ) throw FitsError(status); HduType xtype = HduType(htype); m_hdu = m_parent->pHDU(); switch(xtype) { case ImageHdu: { int tmpBpix=0; if (fits_get_img_type(m_parent->fptr(), &tmpBpix, &status)) throw FitsError(status); imgType = static_cast(tmpBpix); double unsignedZero(0); double scale(1); // getScaling may change imgType from signed int to unsigned, // which does not have its own bitpix value, or to a float // type, which does have a unique bitpix value. To put this // another way, we must take care to not set m_hdu->bitpix() // to an unsigned value. getScaling(imgType,unsignedZero,scale); // ImageHDU types are templated switch (imgType) { case Ibyte: if (primary) { if (!m_hdu) m_hdu = new PrimaryHDU(m_parent,readDataFlag,keys); } else { m_hdu = new ImageExt (m_parent,hduName,readDataFlag,keys,version); } break; case Ishort: if (primary) { if (!m_hdu) { m_hdu = new PrimaryHDU (m_parent,readDataFlag,keys); } } else { m_hdu = new ImageExt (m_parent,hduName,readDataFlag,keys,version); } break; case Iushort: if (primary) { if (!m_hdu) { m_hdu = new PrimaryHDU (m_parent,readDataFlag,keys); } } else { m_hdu = new ImageExt (m_parent,hduName,readDataFlag,keys,version); } imgType = Ishort; break; case Ilong: if (primary) { if (!m_hdu) { m_hdu = new PrimaryHDU (m_parent,readDataFlag,keys); } } else { m_hdu = new ImageExt (m_parent,hduName,readDataFlag,keys,version); } break; case Iulong: if (primary) { if (!m_hdu) { m_hdu = new PrimaryHDU (m_parent,readDataFlag,keys); } } else { m_hdu = new ImageExt (m_parent,hduName,readDataFlag,keys,version); } imgType = Ilong; break; case Ifloat: if (primary) { if (!m_hdu) m_hdu = new PrimaryHDU(m_parent,readDataFlag,keys); } else { m_hdu = new ImageExt (m_parent,hduName,readDataFlag,keys,version); } break; case Idouble: if (primary) { if (!m_hdu) m_hdu = new PrimaryHDU(m_parent,readDataFlag,keys); } else { m_hdu = new ImageExt (m_parent,hduName,readDataFlag,keys,version); } break; // dummy code to avoid SEGV in Solaris. This is supposed to trick the // compiler into instantiating PrimaryHDU, ImageExt // so that it doesn't throw a SEGV if the user tries to read integer data into an // integer array. But Tint is not actually an acceptable value for bitpix. case Tint: if (primary) { if (!m_hdu) { if (unsignedZero == ULBASE && scale == 1) { m_hdu = new PrimaryHDU (m_parent,readDataFlag,keys); } else { m_hdu = new PrimaryHDU (m_parent,readDataFlag,keys); } } } else { if (unsignedZero == ULBASE && scale == 1) { m_hdu = new ImageExt (m_parent,hduName,readDataFlag,keys,version); } else { m_hdu = new ImageExt (m_parent,hduName,readDataFlag,keys,version); } } default: throw HDU::InvalidImageDataType(" invalid data type for FITS Image I/O"); } m_hdu->bitpix(imgType); if (unsignedZero != 0.0) { m_hdu->zeroInit(unsignedZero); } if (scale != 1.0) { m_hdu->scaleInit(scale); } } break; case AsciiTbl: m_hdu = new AsciiTable(m_parent, hduName, readDataFlag, keys, version); m_hdu->bitpix(8); break; case BinaryTbl: m_hdu = new BinTable(m_parent, hduName, readDataFlag, keys, version); m_hdu->bitpix(8); break; default: throw HDU::InvalidImageDataType("FitsError: invalid data type for FITS I/O"); } return m_hdu; } // end commonMake HDU* HDUCreator::MakeTable (const String &name, HduType xtype, int rows, const std::vector& colName, const std::vector& colFmt, const std::vector& colUnit, int version) { switch (xtype) { case AsciiTbl: m_hdu = new AsciiTable(m_parent,name,rows,colName,colFmt,colUnit,version); break; case BinaryTbl: m_hdu = new BinTable(m_parent,name,rows,colName,colFmt,colUnit,version); break; default: throw HDU::InvalidExtensionType("unexpected"); } return m_hdu; } HDU * HDUCreator::Make (int index, bool readDataFlag, const std::vector &keys) { bool primary = (index == 0); String hduName; int version = 0; if (!primary) ExtHDU::readHduName(m_parent->fptr(),index,hduName,version ); return commonMake(hduName,readDataFlag,keys,primary,version); } ExtHDU * HDUCreator::createImage (const String &name, int bitpix, long naxis, const std::vector& naxes, int version) { return MakeImage(name,bitpix,naxis,naxes,version); } ExtHDU * HDUCreator::MakeImage (const String &name, int bpix, long naxis, const std::vector& naxes, int version) { ExtHDU* newImage = 0; switch (bpix) { case BYTE_IMG: newImage = new ImageExt(m_parent,name,bpix,naxis,naxes,version); break; case SHORT_IMG: newImage = new ImageExt(m_parent,name,bpix,naxis,naxes,version); break; case LONG_IMG: newImage = new ImageExt(m_parent,name,bpix,naxis,naxes,version); break; case FLOAT_IMG: newImage = new ImageExt(m_parent,name,bpix,naxis,naxes,version); break; case DOUBLE_IMG: newImage = new ImageExt(m_parent,name,bpix,naxis,naxes,version); break; case USHORT_IMG: newImage = new ImageExt(m_parent,name,bpix,naxis,naxes,version); newImage->bitpix(SHORT_IMG); newImage->zeroInit(USBASE); break; case ULONG_IMG: newImage = new ImageExt(m_parent,name,bpix,naxis,naxes,version); newImage->bitpix(LONG_IMG); newImage->zeroInit(ULBASE); break; default: throw HDU::InvalidImageDataType("FitsError: invalid data type for FITS I/O"); } return newImage; } void HDUCreator::getScaling (long& type, double& zero, double& scale) const { float tmpScale(1.); float zval (.0); int status (0); fits_read_key_flt(m_parent->fptr(),BZERO,&zval,0,&status); if (status) zval = .0; status = 0; fits_read_key_flt(m_parent->fptr(),BSCALE,&tmpScale,0,&status); if (status) tmpScale = 1.0; zero = zval; scale = tmpScale; // if there is no effective scaling ... if (zero == 0.0 && scale == 1.0) { return; } else { int newType = 0; fits_get_img_equivtype(m_parent->fptr(),&newType,&status); if (!status) type = newType; } } // Additional Declarations } // namespace CCfits CCfits/KeyData.cxx0000644000225700000360000001144611470265345013602 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman // KeyData #include "KeyData.h" #include #include namespace CCfits { #ifndef SPEC_TEMPLATE_IMP_DEFECT #ifndef SPEC_TEMPLATE_DECL_DEFECT template<> void KeyData::write() { Keyword::write(); int status = 0; int value(0); if (m_keyval) value = 1; if (fits_update_key(fitsPointer(), Tlogical, const_cast(name().c_str()), &value, const_cast(comment().c_str()), &status)) throw FitsError(status); } template<> void KeyData::write() { Keyword::write(); int status = 0; if (fits_update_key(fitsPointer(), Tstring, const_cast(name().c_str()), const_cast(m_keyval.c_str()), const_cast(comment().c_str()), &status)) throw FitsError(status); } template<> void KeyData >::write() { Keyword::write(); int status = 0; FITSUtil::auto_array_ptr keyVal( new float[2]); keyVal[0] = m_keyval.real(); keyVal[1] = m_keyval.imag(); if (fits_update_key(fitsPointer(), Tcomplex, const_cast(name().c_str()), keyVal.get(), const_cast(comment().c_str()), &status)) throw FitsError(status); } template<> void KeyData >::write() { Keyword::write(); int status = 0; FITSUtil::auto_array_ptr keyVal(new double[2]); keyVal[0] = m_keyval.real(); keyVal[1] = m_keyval.imag(); if (fits_update_key(fitsPointer(), Tdblcomplex, const_cast(name().c_str()), keyVal.get(), const_cast(comment().c_str()), &status)) throw FitsError(status); } template <> std::ostream & KeyData::put (std::ostream &s) const { using std::setw; s << "Keyword Name: " << setw(10) << name() << " Value: " << setw(14) << keyval() << " Type: " << setw(20) << " string " << " Comment: " << comment(); return s; } #endif #endif template <> void KeyData::keyval(const String& newVal) { m_keyval = newVal; } #ifndef SPEC_TEMPLATE_IMP_DEFECT #ifndef SPEC_TEMPLATE_DECL_DEFECT template <> std::ostream & KeyData >::put (std::ostream &s) const { using std::setw; s << "Keyword Name: " << name() << " Value: " << m_keyval.real() << " + i " << m_keyval.imag() << " Type: " << setw(20) << " complex " << " Comment: " << comment() << std::endl; return s; } template <> std::ostream & KeyData >::put (std::ostream &s) const { using std::setw; s << "Keyword Name: " << name() << " Value: " << m_keyval.real() << " + i " << m_keyval.imag() << " Type: " << setw(20) << " complex " << " Comment: " << comment() << std::endl; return s; } template <> std::ostream & KeyData::put (std::ostream &s) const { using std::setw; s << "Keyword Name: " << setw(10) << name() << " Value: " << std::boolalpha << setw(8) << keyval() << " Type: " << setw(20) << " logical " << " Comment: " << comment(); return s; } #endif #endif #ifndef SPEC_TEMPLATE_DECL_DEFECT template <> const String& KeyData::keyval() const { return m_keyval; } #endif #ifndef SPEC_TEMPLATE_DECL_DEFECT template <> void KeyData >::keyval(const std::complex& newVal) { m_keyval = newVal; } template <> void KeyData >::keyval(const std::complex& newVal) { m_keyval = newVal; } template <> const std::complex& KeyData >::keyval() const { return m_keyval; } template <> const std::complex& KeyData >::keyval() const { return m_keyval; } #endif } // namespace CCfits CCfits/Keyword.cxx0000644000225700000360000001641111470265345013701 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #include // FitsError #include "FitsError.h" // HDU #include "HDU.h" // Keyword #include "Keyword.h" // FITS #include "FITS.h" #include "KeyData.h" namespace CCfits { // Class CCfits::Keyword::WrongKeywordValueType Keyword::WrongKeywordValueType::WrongKeywordValueType (const String& diag, bool silent) : FitsException("Error: attempt to read keyword into variable of incorrect type",silent) { addToMessage(string("\nKeyname: ") + diag); if ( FITS::verboseMode() || !silent) std::cerr << "\nKeyname: " << diag << "\n"; } // Class CCfits::Keyword Keyword::Keyword(const Keyword &right) : m_keytype(right.m_keytype), m_parent(0), // Can only assign parent when added to an HDU. m_comment(right.m_comment), m_name(right.m_name) { } Keyword::Keyword (const String &keyname, ValueType keytype, HDU* p, const String &comment) : m_keytype(keytype), m_parent(p), m_comment(comment), m_name(keyname) { } Keyword::~Keyword() { } Keyword & Keyword::operator=(const Keyword &right) { if (this != &right) copy(right); return *this; } bool Keyword::operator==(const Keyword &right) const { return compare(right); } bool Keyword::operator!=(const Keyword &right) const { return !compare(right); } void Keyword::copy (const Keyword& right) { m_name = right.m_name; m_comment = right.m_comment; m_keytype = right.m_keytype; // Can only assign parent when added to an HDU. Do not change // m_parent during an assign. } bool Keyword::compare (const Keyword &right) const { if (m_name != right.m_name) return false; if (m_keytype != right.m_keytype) return false; if (m_comment != right.m_comment) return false; // parent not relevant to compare. //if (m_parent != right.m_parent) return false; return true; } void Keyword::write () { // Just perform parent pointer checking in here. KeyData // subclass will actually handle the writing. if (!m_parent) { bool silent=true; throw FitsException("***CCfits Warning: Keyword must be added to an HDU before it can be written.",silent); } m_parent->makeThisCurrent(); } fitsfile* Keyword::fitsPointer () const { fitsfile* fPtr = 0; if (m_parent) fPtr = m_parent->fitsPointer(); return fPtr; } // Additional Declarations } // namespace CCfits namespace CCfits { #ifndef SPEC_TEMPLATE_IMP_DEFECT #ifndef SPEC_TEMPLATE_DECL_DEFECT template<> float& Keyword::value(float& val) const { double dval=.0; val = static_cast(value(dval)); return val; } template<> double& Keyword::value(double& val) const { switch (m_keytype) { case Tint: { const KeyData& thisKey = static_cast&>(*this); val = thisKey.keyval(); } break; case Tfloat: { const KeyData& thisKey = static_cast&>(*this); val = thisKey.keyval(); } break; case Tdouble: { // Note: if val is of type float some precision will be lost here, // but allow anyway. Presumably the user doesn't mind or they // wouldn't be using single precision. const KeyData& thisKey = static_cast&>(*this); val = thisKey.keyval(); } break; case Tstring: { // Allow only if string can be converted to an integer. const KeyData& thisKey = static_cast&>(*this); std::istringstream testStream(thisKey.keyval()); int stringInt = 0; if (!(testStream >> stringInt) || !testStream.eof()) { throw Keyword::WrongKeywordValueType(name()); } val = stringInt; } break; default: throw Keyword::WrongKeywordValueType(name()); break; } return val; } template <> int& Keyword::value(int& val) const { if (m_keytype == Tstring) { // Allow only if string can be converted to an integer. const KeyData& thisKey = static_cast&>(*this); std::istringstream testStream(thisKey.keyval()); int stringInt = 0; if (!(testStream >> stringInt) || !testStream.eof()) { throw Keyword::WrongKeywordValueType(name()); } val = stringInt; } else if (m_keytype == Tint) { const KeyData& thisKey = static_cast&>(*this); val = thisKey.keyval(); } else { throw Keyword::WrongKeywordValueType(name()); } return val; } template <> void Keyword::setValue(const float& newValue) { if (m_keytype == Tfloat) { KeyData& thisKey = static_cast&>(*this); thisKey.keyval(newValue); thisKey.write(); } else if (m_keytype == Tdouble) { KeyData& thisKey = static_cast&>(*this); thisKey.keyval(static_cast(newValue)); thisKey.write(); } else { throw Keyword::WrongKeywordValueType(name()); } } template <> void Keyword::setValue(const double& newValue) { if (m_keytype == Tdouble) { KeyData& thisKey = static_cast&>(*this); thisKey.keyval(newValue); thisKey.write(); } else if (m_keytype == Tfloat) { // This will lose precision but allow it anyway. KeyData& thisKey = static_cast&>(*this); thisKey.keyval(static_cast(newValue)); thisKey.write(); } else { throw Keyword::WrongKeywordValueType(name()); } } template <> void Keyword::setValue(const int& newValue) { if (m_keytype == Tint) { KeyData& thisKey = static_cast&>(*this); thisKey.keyval(newValue); thisKey.write(); } else if (m_keytype == Tfloat) { KeyData& thisKey = static_cast&>(*this); thisKey.keyval(static_cast(newValue)); thisKey.write(); } else if (m_keytype == Tdouble) { KeyData& thisKey = static_cast&>(*this); thisKey.keyval(static_cast(newValue)); thisKey.write(); } else if (m_keytype == Tstring) { KeyData& thisKey = static_cast&>(*this); std::ostringstream oss; oss << newValue; thisKey.keyval(oss.str()); thisKey.write(); } else { throw Keyword::WrongKeywordValueType(name()); } } #endif #endif } CCfits/KeywordCreator.cxx0000644000225700000360000002117211470265345015221 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman #ifdef _MSC_VER #include "MSconfig.h" // for truncation warning #endif #ifdef HAVE_CONFIG_H #include "config.h" #endif #ifdef SSTREAM_DEFECT #include #else #include #endif // HDU #include "HDU.h" // KeywordCreator #include "KeywordCreator.h" //#include "HDU.h" using std::cout; using std::endl; namespace CCfits { // Class CCfits::KeywordCreator KeywordCreator::KeywordCreator (HDU* p) : m_keyword(0), m_forHDU(p) { } KeywordCreator::~KeywordCreator() { } Keyword* KeywordCreator::getKeyword (const String& keyName, HDU* p) { int status=0; FITSUtil::auto_array_ptr pCard(new char[FLEN_CARD]); FITSUtil::auto_array_ptr pV(new char[FLEN_VALUE]); FITSUtil::auto_array_ptr pCom(new char[FLEN_COMMENT]); char* card = pCard.get(); char* v = pV.get(); char* com = pCom.get(); if (fits_read_card(p->fitsPointer(), const_cast(keyName.c_str()), card,&status) ) throw FitsError(status); if (fits_parse_value(card, v, com, &status)) throw FitsError(status); String valString(v); if (KeywordCreator::isContinued(valString)) { bool restoreQuote = valString[0] == '\''; KeywordCreator::getLongValueString(p, keyName, valString); if (restoreQuote) { valString = '\'' + valString + '\''; } } return parseRecord(keyName,valString,String(com),p); } Keyword* KeywordCreator::createKeyword (const String& keyName, const String& comment) { if (m_keyword == 0) m_keyword = MakeKeyword(keyName,comment); return m_keyword; } Keyword* KeywordCreator::getKeyword (const String& keyName, ValueType keyType, HDU* p) { int status = 0; String val = ""; bool bvalue = 0; float fvalue = 0; double dvalue = 0; std::complex xvalue; std::complex zvalue; int ivalue = 0; unsigned int uvalue = 0; short isvalue = 0; unsigned short usvalue = 0; long ilvalue = 0; unsigned long ulvalue = 0; unsigned char byteVal = 0; FITSUtil::auto_array_ptr pCard(new char[FLEN_CARD]); FITSUtil::auto_array_ptr pV(new char[FLEN_VALUE]); FITSUtil::auto_array_ptr pCom(new char[FLEN_COMMENT]); char* card = pCard.get(); char* v = pV.get(); char* com = pCom.get(); Keyword* readKey = 0; if (fits_read_card(p->fitsPointer(), const_cast(keyName.c_str()), card,&status) ) throw FitsError(status); if (fits_parse_value(card, v, com, &status)) throw FitsError(status); String value(v); String comment(com); if (KeywordCreator::isContinued(value)) { bool restoreQuote = value[0] == '\''; KeywordCreator::getLongValueString(p, keyName, value); if (restoreQuote) { value = '\'' + value + '\''; } } #ifdef SSTREAM_DEFECT std::istrstream vstream( value.c_str() ); #else std::istringstream vstream(value); #endif switch (keyType) { case Tstring: readKey = new KeyData(keyName, Tstring, value, p, comment); break; case Tlogical: vstream >> bvalue; readKey = new KeyData(keyName, Tlogical, bvalue, p, comment); break; case Tbyte: vstream >> byteVal; readKey = new KeyData(keyName, Tbyte, byteVal, p, comment); break; case Tfloat: vstream >> fvalue; readKey = new KeyData(keyName, Tfloat, fvalue, p, comment); break; case Tdouble: vstream >> dvalue; readKey = new KeyData(keyName, Tdouble, dvalue, p, comment); break; case Tcomplex: vstream >> xvalue; readKey = new KeyData >(keyName, Tcomplex, xvalue, p, comment); break; case Tdblcomplex: vstream >> zvalue; readKey = new KeyData >(keyName, Tdblcomplex, zvalue, p, comment); break; case Tint: vstream >> ivalue; readKey = new KeyData(keyName, Tint, ivalue, p, comment); break; case Tuint: vstream >> uvalue; readKey = new KeyData(keyName, Tuint, uvalue, p, comment); break; case Tshort: vstream >> isvalue; readKey = new KeyData(keyName, Tshort, isvalue, p, comment); break; case Tushort: vstream >> usvalue; readKey = new KeyData(keyName, Tushort, usvalue, p, comment); break; case Tlong: vstream >> ilvalue; readKey = new KeyData(keyName, Tlong, ilvalue, p, comment); break; case Tulong: vstream >> ulvalue; readKey = new KeyData(keyName, Tulong, ulvalue, p, comment); break; default: std::cerr << "Unknown keyword type\n"; } return readKey; } Keyword* KeywordCreator::getKeyword (int keyNumber, HDU* p) { FITSUtil::auto_array_ptr pValue(new char[FLEN_VALUE]); FITSUtil::auto_array_ptr pKey(new char[FLEN_KEYWORD]); FITSUtil::auto_array_ptr pComment(new char[FLEN_COMMENT]); char* key = pKey.get(); char* comment = pComment.get(); char* value = pValue.get(); int status(0); if (fits_read_keyn(p->fitsPointer(),keyNumber,key,value,comment,&status)) { throw FitsError(status); } String valString(value); if (KeywordCreator::isContinued(valString)) { bool restoreQuote = valString[0] == '\''; KeywordCreator::getLongValueString(p, String(key), valString); if (restoreQuote) { valString = '\'' + valString + '\''; } } int keyClass (fits_get_keyclass(key)); if ( keyClass == TYP_COMM_KEY || keyClass == TYP_CONT_KEY) { return 0; } else { return parseRecord(String(key),valString,String(comment),p); } } Keyword* KeywordCreator::parseRecord (const String& name, const String& valueString, const String& comment, HDU* hdu) { char keyType('\0'); String value (""); bool bvalue (0); double dvalue (0); int ivalue (0); std::complex xvalue(0,0); int status (0); if ( valueString[0] == '\'') { value = valueString.substr(1,valueString.length()-2); } else { value = valueString; } #ifdef SSTREAM_DEFECT std::istrstream vstream( value.c_str() ); #else std::istringstream vstream(value); #endif if (fits_get_keytype(const_cast(valueString.c_str()), &keyType, &status)) { throw FitsError(status); } switch(keyType) { case 'L': value == "T" ? bvalue = true : bvalue = false; return new KeyData(name, Tlogical, bvalue, hdu, comment); break; case 'F': vstream >> dvalue; return new KeyData(name, Tdouble, dvalue, hdu, comment); break; case 'I': case 'T': vstream >> ivalue; return new KeyData(name, Tint, ivalue, hdu, comment); break; case 'X': vstream >> xvalue; return new KeyData >(name, Tcomplex, xvalue, hdu, comment); case 'C': default: return new KeyData(name, Tstring, value.substr(0,value.find_last_not_of(" ")+1),hdu, comment); } } bool KeywordCreator::isContinued (const String& value) { // Check whether the last non-whitespace char in the value string // is an ampersand, which indicates the value string is to be // continued on the next line. bool status = false; String::size_type ampTest = value.find_last_not_of(String(" \n\t'")); if (ampTest != String::npos) { if (value[ampTest] == '&') { status = true; } } return status; } void KeywordCreator::getLongValueString (HDU* p, const String& keyName, String& value) { char* lv = 0; int status = 0; // The following function actually allocates the memory for the // lv string - very unusual for cfitsio. if (fits_read_key_longstr(p->fitsPointer(), const_cast(keyName.c_str()), &lv, 0, &status)) { delete lv; throw FitsError(status); } value = String(lv); delete lv; } // Additional Declarations } // namespace CCfits CCfits/PHDU.cxx0000644000225700000360000001036411470265345013016 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman // FITS #include "FITS.h" // FITSBase #include "FITSBase.h" // PHDU #include "PHDU.h" namespace CCfits { // Class CCfits::PHDU PHDU::PHDU(const PHDU &right) : HDU(right), m_simple(true), m_extend(true) { } PHDU::PHDU (FITSBase* p, int bpix, int naxis, const std::vector& axes) : HDU(p,bpix,naxis, axes), m_simple(true), m_extend(true) { int status (0); // If file name explicitly asks for compression, don't create an // image here. Primaries can't hold compressed images. The FITS // image ctor will have to create an image extension instead. string::size_type compressSpecifier = FITSUtil::checkForCompressString(p->name()); if (compressSpecifier == string::npos) { long *naxesArray = 0; FITSUtil::CVarray convert; naxesArray = convert(axes); if (fits_create_img(fitsPointer(), bpix, naxis, naxesArray, &status) != 0) { delete [] naxesArray; throw FitsError(status); } if (fits_flush_file(fitsPointer(),&status)) { delete [] naxesArray; throw FitsError(status); } delete [] naxesArray; } index(0); } PHDU::PHDU (FITSBase* p) //! Reading Primary HDU constructor. /*! Constructor used when reading the primary HDU from an existing file. * Does nothing except initialize, with the real work done by the subclass * PrimaryHDU. */ : HDU(p), m_simple(true), m_extend(true) { } PHDU::~PHDU() { //! Destructor } void PHDU::initRead () { //! Read image header and update fits pointer accordingly. /*! Private: called by ctor. */ long pcount=0, gcount=0; int status=0; int simp = 0; int xtend = 0; int numAxes = 0; if (fits_get_img_dim(fitsPointer(), &numAxes, &status) != 0) { throw FitsError(status); } naxis() = numAxes; FITSUtil::auto_array_ptr pAxes(0); if (numAxes > 0) pAxes.reset(new long[numAxes]); long* axes = pAxes.get(); int bpix = 0; if (fits_read_imghdr(fitsPointer(), MAXDIM, &simp, &bpix, &numAxes, axes, &pcount, &gcount, &xtend, &status) != 0) throw FitsError(status); bitpix(bpix); simple(simp != 0); extend(xtend != 0); if (numAxes > 0) { naxes().resize(naxis()); std::copy(&axes[0],&axes[numAxes],naxes().begin()); } } void PHDU::zero (double value) { makeThisCurrent(); if (checkImgDataTypeChange(value, scale())) { if ( naxis()) { int status(0); if (fits_update_key(fitsPointer(), Tdouble, BZERO, &value, 0, &status)) throw FitsError(status); fits_flush_file(fitsPointer(), &status); HDU::zero(value); } } else { bool silent=false; string msg("CCfits Error: Cannot set BZERO to a value which will change image data\n"); msg += " from integer type to floating point type."; throw FitsException(msg,silent); } } void PHDU::scale (double value) { makeThisCurrent(); if (checkImgDataTypeChange(zero(), value)) { if (naxis()) { int status(0); if (fits_update_key(fitsPointer(), Tdouble, BSCALE, &value, 0, &status)) throw FitsError(status); fits_flush_file(fitsPointer(), &status); HDU::scale(value); } } else { bool silent=false; string msg("CCfits Error: Cannot set BSCALE to a value which will change image data\n"); msg += " from integer type to floating point type."; throw FitsException(msg,silent); } } double PHDU::zero () const { return HDU::zero(); } double PHDU::scale () const { return HDU::scale(); } // Additional Declarations } // namespace CCfits CCfits/Table.cxx0000644000225700000360000002612411470265345013306 0ustar cagordonlhea// Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman // Column #include "Column.h" // ColumnCreator #include "ColumnCreator.h" // Table #include "Table.h" // FITS #include "FITS.h" #include #include namespace CCfits { // Class CCfits::Table::NoSuchColumn Table::NoSuchColumn::NoSuchColumn (const String& name, bool silent) : FitsException("Fits Error: cannot find column named: ",silent) { addToMessage(name); if (!silent || FITS::verboseMode() ) std::cerr << name << '\n'; } Table::NoSuchColumn::NoSuchColumn (int index, bool silent) : FitsException("Fits Error: no column numbered: ",silent) { std::ostringstream oss; oss << index; addToMessage(oss.str()); if (!silent || FITS::verboseMode() ) std::cerr << index << '\n'; } // Class CCfits::Table::InvalidColumnSpecification Table::InvalidColumnSpecification::InvalidColumnSpecification (const String& msg, bool silent) : FitsException("Fits Error: illegal column specification ",silent) { addToMessage(msg); if (!silent || FITS::verboseMode() ) std::cerr << msg << '\n'; } // Class CCfits::Table Table::Table(const Table &right) : ExtHDU(right), m_numCols(right.m_numCols), m_column() { // deep-copy the right hand side data. copyData(right); } Table::Table (FITSBase* p, HduType xtype, const String &hduName, int rows, const std::vector& columnName, const std::vector& columnFmt, const std::vector& columnUnit, int version) : ExtHDU(p, xtype, hduName, 8, 2, std::vector(2), version), m_numCols(columnName.size()), m_column() { int status=0; // remember this is the writing constructor so user must specify // what kind of extension this is. int tblType = xtype; naxes(1) = rows; const size_t n(columnName.size()); //FITSUtil::auto_array_ptr pCname(new char*[n]); //FITSUtil::auto_array_ptr pCformat(new char*[n]); //FITSUtil::auto_array_ptr pCunit(new char*[n]); char** cname = new char*[n]; char** cformat = new char*[n]; char** cunit = new char*[n]; char nullString[] = {'\0'}; for (size_t i = 0; i < n; ++i) { cname[i] = const_cast(columnName[i].c_str()); cformat[i] = const_cast(columnFmt[i].c_str()); if (i < columnUnit.size()) cunit[i] = const_cast(columnUnit[i].c_str()); else cunit[i] = nullString; } if (fits_create_tbl(fitsPointer(), tblType, rows , m_numCols, cname, cformat, cunit, const_cast(hduName.c_str()), &status)) { delete [] cname; delete [] cformat; delete [] cunit; throw FitsError(status); } delete[] cname; delete[] cformat; delete[] cunit; } Table::Table (FITSBase* p, HduType xtype, const String &hduName, int version) : ExtHDU(p,xtype,hduName,version), m_numCols(0), m_column() { getVersion(); } Table::Table (FITSBase* p, HduType xtype, int number) : ExtHDU(p,xtype,number), m_numCols(0), m_column() { getVersion(); } Table::~Table() { // destroy existing data (garbage collection for heap objects). clearData(); } void Table::initRead () { int ncols=0; int i=0; int status=0; status = fits_get_num_cols(fitsPointer(), &ncols, &status); if (status != 0) throw FitsError(status); std::vector colName(ncols,""); std::vector colFmt(ncols,""); std::vector colUnit(ncols,""); ColumnCreator create(this); // virtual readTableHeader(ncols, colName, colFmt, colUnit); for(i=0; i::const_iterator ki = keyWord().begin(); ki != keyWord().end(); ki++) { s << *((*ki).second) << std::endl; } std::vector __tmp; std::map::const_iterator ciEnd(m_column.end()); std::map::const_iterator ci(m_column.begin()); while (ci != ciEnd) { __tmp.push_back((*ci).second); ++ci; } std::sort(__tmp.begin(),__tmp.end(),FITSUtil::ComparePtrIndex()); for (std::vector::iterator lci = __tmp.begin(); lci != __tmp.end(); ++lci) { s << **lci << std::flush; } return s; } void Table::column (int columnNum, Column *value) { std::map::const_iterator columnByNum; for (columnByNum=m_column.begin(); columnByNum!=m_column.end(); columnByNum++) if ( ((*columnByNum).second)->index() == columnNum) break; m_column[(*columnByNum).first] = value; } void Table::init (bool readFlag, const std::vector& keys) { // read and defined the columns from the header. initRead(); // read data or keys if any are requested. if (readFlag || keys.size() > 0) readData(readFlag,keys); } void Table::clearData () { // obliterate current contents, then remove pointers from the map. for (std::map::const_iterator col = m_column.begin(); col != m_column.end(); col++) { delete (*col).second; } m_column.clear(); } void Table::copyData (const Table& right) { // ensure deep copy. clone() calls the copy constructor for Column. // Column has 'deep copy' because all its data members that need // to be copied (i.e. not the pointer to the fits file) are allocated // on the stack by being Container types. std::map newColumnContainer; try { for (std::map::const_iterator col = right.m_column.begin(); col != right.m_column.end(); col++) { Column* colCopy = (*col).second->clone(); // This function must be a friend of Column in order to do this... colCopy->m_parent = this; newColumnContainer[(*col).first] = colCopy; } m_column = newColumnContainer; } catch (...) { throw; } } Column& Table::column (const String& colName, bool caseSensitive) const { bool isFound = false; std::map::const_iterator key = m_column.begin(); if (caseSensitive) { key = m_column.find(colName); isFound = (key != m_column.end()); } else { const string lcColName = FITSUtil::lowerCase(colName); while (!isFound && key != m_column.end()) { isFound = (lcColName == FITSUtil::lowerCase(key->first)); if (!isFound) ++key; } } if ( !isFound ) throw NoSuchColumn(colName); return *(key->second); } Column& Table::column (int colIndex) const { std::map::const_iterator key; for ( key = m_column.begin(); key != m_column.end(); key++) { if ( ((*key).second)->index() == colIndex) break; } if ( key == m_column.end() ) throw NoSuchColumn(colIndex); return *((*key).second); } void Table::updateRows () { long numrows(0); int status(0); if (fits_get_num_rows(fitsPointer(),&numrows,&status) ) throw FitsError(status); naxes(1,numrows); } void Table::setColumn (const String& colname, Column* value) { // don't do map's default behavior which is to add a new column // if the input name and data don't exist. m_column[colname] = value; } void Table::deleteColumn (const String& columnName) { Column& doomed = column(columnName); int status(0); if ( fits_delete_col(fitsPointer(),doomed.index(),&status) ) throw FitsError(status); delete &doomed; m_column.erase(columnName); reindex(); updateRows(); } void Table::insertRows (long first, long number) { int status(0); if (fits_insert_rows(fitsPointer(),first,number,&status)) throw FitsError(status); // cfitsio's semantics are that rows are insert after row first, // while vector's insert semantic is to insert before the initial. std::map::iterator ci = m_column.begin(); std::map::iterator ciEnd = m_column.end(); while (ci != ciEnd) { ((*ci).second)->insertRows(first,number); ++ci; } updateRows(); } void Table::deleteRows (long first, long number) { // this should only be able to throw the FitsError exception and // should not leak resources as per the standard library guarantee for vector. makeThisCurrent(); int status(0); // cfitsio will reject invalid values of first, number. (e.g. first <= 0). if (fits_delete_rows(fitsPointer(),first,number,&status)) throw FitsError(status); std::map::iterator ci = m_column.begin(); std::map::iterator ciEnd = m_column.end(); while (ci != ciEnd) { ((*ci).second)->deleteRows(first,number); ++ci; } updateRows(); } void Table::deleteRows (const std::vector& rowList) { int status(0); makeThisCurrent(); FITSUtil::CVarray convert; FITSUtil::auto_array_ptr pDoomedRows(convert(rowList)); long* doomedRows = pDoomedRows.get(); if (fits_delete_rowlist(fitsPointer(),doomedRows,rowList.size(),&status)) throw FitsError(status); std::map::iterator ci = m_column.begin(); std::map::iterator ciEnd = m_column.end(); const size_t N(rowList.size()); while (ci != ciEnd) { for (size_t j = 0; j < N; ++j) { ((*ci).second)->deleteRows(rowList[j],1); } ++ci; } updateRows(); } void Table::reindex () { makeThisCurrent(); std::map::iterator ci(m_column.begin()); std::map::iterator ciEnd(m_column.end()); int status(0); while (ci != ciEnd) { int colnum(0); char* cname = const_cast((*ci).first.c_str()); if (fits_get_colnum(fitsPointer(),CASESEN,cname,&colnum,&status)) throw FitsError(status); (*ci).second->index(colnum); ++ci; } } long Table::getRowsize () const { int status = 0; long rowSize = 0; if (fits_get_rowsize(fitsPointer(), &rowSize, &status)) throw FitsError(status); return rowSize; } // Additional Declarations } // namespace CCfits CCfits/cookbook.cxx0000644000225700000360000006071011470265345014064 0ustar cagordonlhea// cookbook CCfits demonstration program // Astrophysics Science Division, // NASA/ Goddard Space Flight Center // HEASARC // http://heasarc.gsfc.nasa.gov // e-mail: ccfits@legacy.gsfc.nasa.gov // // Original author: Ben Dorman // The CCfits headers are expected to be installed in a subdirectory of // the include path. // The header file contains all that is necessary to use both the CCfits // library and the cfitsio library (for example, it includes fitsio.h) thus making // all of cfitsio's symbolic names available. #ifdef _MSC_VER #include "MSconfig.h" // for truncation warning #endif #ifdef HAVE_CONFIG_H #include "config.h" #endif // this includes 12 of the CCfits headers and will support all CCfits operations. // the installed location of the library headers is $(ROOT)/include/CCfits // to use the library either add -I$(ROOT)/include/CCfits or #include // in the compilation target. #include #include // The library is enclosed in a namespace. using namespace CCfits; using std::valarray; int main(); int writeImage(); int writeAscii(); int writeBinary(); int copyHDU(); int selectRows(); int readHeader(); int readImage(); int readTable(); int readExtendedSyntax(); int main() { FITS::setVerboseMode(true); try { if (!writeImage()) std::cerr << " writeImage() \n"; if (!writeAscii()) std::cerr << " writeAscii() \n"; if (!writeBinary()) std::cerr << " writeBinary() \n"; if (!copyHDU()) std::cerr << " copyHDU() \n"; if (!readHeader()) std::cerr << " readHeader() \n"; if (!readImage()) std::cerr << " readImage() \n"; if (!readTable()) std::cerr << " readTable() \n"; if (!readExtendedSyntax()) std::cerr << " readExtendedSyntax() \n"; if (!selectRows()) std::cerr << " selectRows() \n"; } catch (FitsException&) // will catch all exceptions thrown by CCfits, including errors // found by cfitsio (status != 0). { std::cerr << " Fits Exception Thrown by test function \n"; } return 0; } int writeImage() { // Create a FITS primary array containing a 2-D image // declare axis arrays. long naxis = 2; long naxes[2] = { 300, 200 }; // declare auto-pointer to FITS at function scope. Ensures no resources // leaked if something fails in dynamic allocation. std::auto_ptr pFits(0); try { // overwrite existing file if the file already exists. const std::string fileName("!atestfil.fit"); // Create a new FITS object, specifying the data type and axes for the primary // image. Simultaneously create the corresponding file. // this image is unsigned short data, demonstrating the cfitsio extension // to the FITS standard. pFits.reset( new FITS(fileName , USHORT_IMG , naxis , naxes ) ); } catch (FITS::CantCreate) { // ... or not, as the case may be. return -1; } // references for clarity. long& vectorLength = naxes[0]; long& numberOfRows = naxes[1]; long nelements(1); // Find the total size of the array. // this is a little fancier than necessary ( It's only // calculating naxes[0]*naxes[1]) but it demonstrates use of the // C++ standard library accumulate algorithm. nelements = std::accumulate(&naxes[0],&naxes[naxis],1,std::multiplies()); // create a new image extension with a 300x300 array containing float data. std::vector extAx(2,300); string newName ("NEW-EXTENSION"); ExtHDU* imageExt = pFits->addImage(newName,FLOAT_IMG,extAx); // create a dummy row with a ramp. Create an array and copy the row to // row-sized slices. [also demonstrates the use of valarray slices]. // also demonstrate implicit type conversion when writing to the image: // input array will be of type float. std::valarray row(vectorLength); for (long j = 0; j < vectorLength; ++j) row[j] = j; std::valarray array(nelements); for (int i = 0; i < numberOfRows; ++i) { array[std::slice(vectorLength*static_cast(i),vectorLength,1)] = row + i; } #ifdef VALARRAY_DEFECT const double PI ( std::atan(1.)*4. ); #else const double PI (std::atan(1.)*4.); #endif // create some data for the image extension. long extElements = std::accumulate(extAx.begin(),extAx.end(),1,std::multiplies()); std::valarray ranData(extElements); const float PIBY = static_cast < float > (PI/150.); for ( int jj = 0 ; jj < extElements ; ++jj) { float arg = static_cast < float > ( PIBY*jj ); #ifdef VALARRAY_DEFECT float val = std::cos( arg ); ranData[jj] = val; #else ranData[jj] = static_cast < float > ( std::cos(arg) ); #endif } long fpixel(1); // write the image extension data: also demonstrates switching between // HDUs. imageExt->write(fpixel,extElements,ranData); //add two keys to the primary header, one long, one complex. long exposure(1500); #ifdef VALARRAY_DEFECT double re = std::cos( 2*PI/3.0 ); double im = std::sin( 2*PI/3.0 ); std::complex omega( re, im ); #else float re = static_cast < float > ( std::cos(2*PI/3.) ); float im = static_cast < float > ( std::sin(2*PI/3.) ); std::complex omega( re, im ); #endif pFits->pHDU().addKey("EXPOSURE", exposure,"Total Exposure Time"); pFits->pHDU().addKey("OMEGA",omega," Complex cube root of 1 "); // The function PHDU& FITS::pHDU() returns a reference to the object representing // the primary HDU; PHDU::write( ) is then used to write the data. pFits->pHDU().write(fpixel,nelements,array); // PHDU's friend ostream operator. Doesn't print the entire array, just the // required & user keywords, and is provided largely for testing purposes [see // readImage() for an example of how to output the image array to a stream]. std::cout << pFits->pHDU() << std::endl; return 0; } int writeAscii () //****************************************************************** // Create an ASCII Table extension containing 3 columns and 6 rows * //****************************************************************** { // declare auto-pointer to FITS at function scope. Ensures no resources // leaked if something fails in dynamic allocation. std::auto_ptr pFits(0); try { const std::string fileName("atestfil.fit"); // append the new extension to file created in previous function call. // CCfits writing constructor. // if this had been a new file, then the following code would create // a dummy primary array with BITPIX=8 and NAXIS=0. pFits.reset( new FITS(fileName,Write) ); } catch (CCfits::FITS::CantOpen) { // ... or not, as the case may be. return -1; } unsigned long rows(6); string hduName("PLANETS_ASCII"); std::vector colName(3,""); std::vector colForm(3,""); std::vector colUnit(3,""); /* define the name, datatype, and physical units for the 3 columns */ colName[0] = "Planet"; colName[1] = "Diameter"; colName[2] = "Density"; colForm[0] = "a8"; colForm[1] = "i6"; colForm[2] = "f4.2"; colUnit[0] = ""; colUnit[1] = "km"; colUnit[2] = "g/cm^-3"; std::vector planets(rows); const char *planet[] = {"Mercury", "Venus", "Earth", "Mars","Jupiter","Saturn"}; const char *mnemoy[] = {"Many", "Volcanoes", "Erupt", "Mulberry","Jam","Sandwiches","Under", "Normal","Pressure"}; long diameter[] = { 4880, 12112, 12742, 6800, 143000, 121000}; float density[] = { 5.1f, 5.3f, 5.52f, 3.94f, 1.33f, 0.69f}; // append a new ASCII table to the fits file. Note that the user // cannot call the Ascii or Bin Table constructors directly as they // are protected. Table* newTable = pFits->addTable(hduName,rows,colName,colForm,colUnit,AsciiTbl); size_t j = 0; for ( ; j < rows; ++j) planets[j] = string(planet[j]); // Table::column(const std::string& name) returns a reference to a Column object try { newTable->column(colName[0]).write(planets,1); newTable->column(colName[1]).write(diameter,rows,1); newTable->column(colName[2]).write(density,rows,1); } catch (FitsException&) { // ExtHDU::column could in principle throw a NoSuchColumn exception, // or some other fits error may ensue. std::cerr << " Error in writing to columns - check e.g. that columns of specified name " << " exist in the extension \n"; } // FITSUtil::auto_array_ptr is provided to counter resource leaks that // may arise from C-arrays. It is a std::auto_ptr analog that calls // delete[] instead of delete. FITSUtil::auto_array_ptr pDiameter(new long[rows]); FITSUtil::auto_array_ptr pDensity(new float[rows]); long* Cdiameter = pDiameter.get(); float* Cdensity = pDensity.get(); Cdiameter[0] = 4880; Cdiameter[1] = 12112; Cdiameter[2] = 12742; Cdiameter[3] = 6800; Cdiameter[4] = 143000; Cdiameter[5] = 121000; Cdensity[0] = 5.1f; Cdensity[1] = 5.3f; Cdensity[2] = 5.52f; Cdensity[3] = 3.94f; Cdensity[4] = 1.33f; Cdensity[5] = 0.69; // this << operator outputs everything that has been read. std::cout << *newTable << std::endl; pFits->pHDU().addKey("NEWVALUE",42," Test of adding keyword to different extension"); pFits->pHDU().addKey("STRING",std::string(" Rope "),"trailing blank test 1 "); pFits->pHDU().addKey("STRING2",std::string("Cord"),"trailing blank test 2 "); // demonstrate increaing number of rows and null values. long ignoreVal(12112); long nullNumber(-999); try { // add a TNULLn value to column 2. newTable->column(colName[1]).addNullValue(nullNumber); // test that writing new data properly expands the number of rows // in both the file]).write(planets,rows-3); newTable->column(colName[2]).write(density,rows,rows-3); // test the undefined value functionality. Undefineds are replaced on // disk but not in the memory copy. newTable->column(colName[1]).write(diameter,rows,rows-3,&ignoreVal); } catch (FitsException&) { // this time we're going to ignore problems in these operations } // output header information to check that everything we did so far // hasn't corrupted the file. std::cout << pFits->pHDU() << std::endl; std::vector mnemon(9); for ( j = 0; j < 9; ++j) mnemon[j] = string(mnemoy[j]); // Add a new column of string type to the Table. // type, columnName, width, units. [optional - decimals, column number] // decimals is only relevant for floatingpoint data in ascii columns. newTable->addColumn(Tstring,"Mnemonic",10," words "); newTable->column("Mnemonic").write(mnemon,1); // write the data string. newTable->writeDate(); // and see if it all worked right. std::cout << *newTable << std::endl; return 0; } int writeBinary () //********************************************************************* // Create a BINARY table extension and write and manipulate vector rows //********************************************************************* { std::auto_ptr pFits(0); try { const std::string fileName("atestfil.fit"); pFits.reset( new FITS(fileName,Write) ); } catch (CCfits::FITS::CantOpen) { return -1; } unsigned long rows(3); string hduName("TABLE_BINARY"); std::vector colName(7,""); std::vector colForm(7,""); std::vector colUnit(7,""); colName[0] = "numbers"; colName[1] = "sequences"; colName[2] = "powers"; colName[3] = "big-integers"; colName[4] = "dcomplex-roots"; colName[5] = "fcomplex-roots"; colName[6] = "scalar-complex"; colForm[0] = "8A"; colForm[1] = "20J"; colForm[2] = "20D"; colForm[3] = "20V"; colForm[4] = "20M"; colForm[5] = "20C"; colForm[6] = "1M"; colUnit[0] = "magnets"; colUnit[1] = "bulbs"; colUnit[2] = "batteries"; colUnit[3] = "mulberries"; colUnit[4] = ""; colUnit[5] = ""; colUnit[6] = "pico boo"; std::vector numbers(rows); const string num("NUMBER-"); for ( size_t j = 0; j < rows; ++j) { #ifdef SSTREAM_DEFECT std::ostrstream pStr; #else std::ostringstream pStr; #endif pStr << num << j+1; #ifdef SSTREAM_DEFECT pStr << std::ends; #endif numbers[j] = string(pStr.str()); } const size_t OFFSET(20); // write operations take in data as valarray, vector , and // vector >, and T* C-arrays. Create arrays to exercise the C++ // containers. Check complex I/O for both float and double complex types. std::valarray sequence(60); std::vector sequenceVector(60); std::vector > sequenceVV(3); for ( size_t j = 0; j < rows; ++j) { sequence[OFFSET*j] = 1 + j; sequence[OFFSET*j+1] = 1 + j; sequenceVector[OFFSET*j] = sequence[OFFSET*j]; sequenceVector[OFFSET*j+1] = sequence[OFFSET*j+1]; // generate Fibonacci numbers. for (size_t i = 2; i < OFFSET; ++i) { size_t elt (OFFSET*j +i); sequence[elt] = sequence[elt-1] + sequence[elt - 2]; sequenceVector[elt] = sequence[elt] ; } sequenceVV[j].resize(OFFSET); sequenceVV[j] = sequence[std::slice(OFFSET*j,OFFSET,1)]; } std::valarray unsignedData(60); unsigned int base (1 << 31); std::valarray powers(60); std::vector powerVector(60); std::vector > powerVV(3); std::valarray > croots(60); std::valarray > fcroots(60); std::vector > fcroots_vector(60); std::vector > > fcrootv(3); const double PI (std::atan(1.)*4.); // create complex data as 60th roots of unity. double PIBY = PI/60.; for ( size_t j = 0; j < rows; ++j) { for (size_t i = 0; i < OFFSET; ++i) { size_t elt (OFFSET*j+i); unsignedData[elt] = sequence[elt]; #ifdef VALARRAY_DEFECT double re = std::cos(PIBY*elt); double im = std::sin(PIBY*elt); croots[elt] = std::complex( re, im ); #else croots[elt] = std::complex(std::cos(PIBY*elt),std::sin(PIBY*elt)); #endif fcroots[elt] = std::complex(croots[elt].real(),croots[elt].imag()); double x = i+1; powers[elt] = pow(x,(int)j+1); powerVector[elt] = powers[elt]; } powerVV[j].resize(OFFSET); powerVV[j] = powers[std::slice(OFFSET*j,OFFSET,1)]; } #ifdef TEMPLATE_AMBIG7_DEFECT std::slice s ( 0, 20, 1 ); std::valarray > fcroots_sliced ( fcroots[s] ); FITSUtil::fillMSva(fcroots_vector, fcroots_sliced ); #else FITSUtil::fill(fcroots_vector,fcroots[std::slice(0,20,1)]); #endif unsignedData += base; // syntax identical to Binary Table Table* newTable = pFits->addTable(hduName,rows,colName,colForm,colUnit); // numbers is a scalar column newTable->column(colName[0]).write(numbers,1); // write valarrays to vector column: note signature change newTable->column(colName[1]).write(sequence,rows,1); newTable->column(colName[2]).write(powers,rows,1); newTable->column(colName[3]).write(unsignedData,rows,1); newTable->column(colName[4]).write(croots,rows,1); newTable->column(colName[5]).write(fcroots,rows,3); newTable->column(colName[6]).write(fcroots_vector,1); // write vectors to column: note signature change newTable->column(colName[1]).write(sequenceVector,rows,4); newTable->column(colName[2]).write(powerVector,rows,4); std::cout << *newTable << std::endl; for (size_t j = 0; j < 3 ; ++j) { fcrootv[j].resize(20); fcrootv[j] = fcroots[std::slice(20*j,20,1)]; } // write vector object to column. newTable->column(colName[1]).writeArrays(sequenceVV,7); newTable->column(colName[2]).writeArrays(powerVV,7); // create a new vector column in the Table newTable->addColumn(Tfloat,"powerSeq",20,"none"); // add data entries to it. newTable->column("powerSeq").writeArrays(powerVV,1); newTable->column("powerSeq").write(powerVector,rows,4); newTable->column("dcomplex-roots").write(croots,rows,4); newTable->column("powerSeq").write(sequenceVector,rows,7); std::cout << *newTable << std::endl; // delete one of the original columns. newTable->deleteColumn(colName[2]); // add a new set of rows starting after row 3. So we'll have 14 with // rows 4,5,6,7,8 blank newTable->insertRows(3,5); // now, in the new column, write 3 rows (sequenceVV.size() = 3). This // will place data in rows 3,4,5 of this column,overwriting them. newTable->column("powerSeq").writeArrays(sequenceVV,3); newTable->column("fcomplex-roots").writeArrays(fcrootv,3); // delete 3 rows starting with row 2. A Table:: method, so the same // code is called for all Table objects. We should now have 11 rows. newTable->deleteRows(2,3); //add a history string. This function call is in HDU:: so is identical //for all HDUs string hist("This file was created for testing CCfits write functionality"); hist += " it serves no other useful purpose. This particular part of the file was "; hist += " constructed to test the writeHistory() and writeComment() functionality" ; newTable->writeHistory(hist); // add a comment string. Use std::string method to change the text in the message // and write the previous junk as a comment. hist.insert(0, " COMMENT TEST "); newTable->writeComment(hist); // ... print the result. std::cout << *newTable << std::endl; return 0; } int copyHDU() { //*******************************************************************/ // copy the 1st and 3rd HDUs from the input file to a new FITS file */ //*******************************************************************/ const string inFileName("atestfil.fit"); const string outFileName("btestfil.fit"); int status(0); status = 0; remove(outFileName.c_str()); /* Delete old file if it already exists */ // open the existing FITS file (Read is the default anyway) FITS inFile(inFileName,Read); // custom constructor FITS::FITS(const string&, const FITS&) for // this particular task. FITS outFile(outFileName,inFile); // copy extension by number... outFile.copy(inFile.extension(2)); // copy extension by name... outFile.copy(inFile.extension("TABLE_BINARY")); return 0; } int readHeader() { const string SPECTRUM("SPECTRUM"); // read a particular HDU within the file. This call reads just the header // information from SPECTRUM std::auto_ptr pInfile(new FITS("file1.pha",Read,SPECTRUM)); // define a reference for clarity. ExtHDU& table = pInfile->extension(SPECTRUM); // read all the keywords, excluding those associated with columns. table.readAllKeys(); // print the result. std::cout << table << std::endl; return 0; } int readImage() { std::auto_ptr pInfile(new FITS("atestfil.fit",Read,true)); PHDU& image = pInfile->pHDU(); std::valarray contents; // read all user-specifed, coordinate, and checksum keys in the image image.readAllKeys(); image.read(contents); // this doesn't print the data, just header info. std::cout << image << std::endl; long ax1(image.axis(0)); long ax2(image.axis(1)); for (long j = 0; j < ax2; j+=10) { std::ostream_iterator c(std::cout,"\t"); std::copy(&contents[0]+j*ax1,&contents[0]+(j+1)*ax1,c); std::cout << '\n'; } std::cout << std::endl; return 0; } int readTable() { // read a table and explicitly read selected columns. To read all the // data on construction, set the last argument of the FITS constructor // call to 'true'. This has been tested. std::vector hdus(2); hdus[0] = "PLANETS_ASCII"; hdus[1] = "TABLE_BINARY"; std::auto_ptr pInfile(new FITS("atestfil.fit",Read,hdus,false)); ExtHDU& table = pInfile->extension(hdus[1]); std::vector < valarray > pp; table.column("powerSeq").readArrays( pp, 1,3 ); std::vector < valarray > > cc; table.column("dcomplex-roots").readArrays( cc, 1,3 ); std::valarray < std::complex > ff; table.column("fcomplex-roots").read( ff, 7 ); std::vector > sf; table.column("scalar-complex").read(sf, 10, 15); std::cout << pInfile->extension(hdus[0]) << std::endl; std::cout << pInfile->extension(hdus[1]) << std::endl; return 0; } int readExtendedSyntax() { // Current extension will be set to PLANETS_ASCII after construction: std::auto_ptr pInfile(new FITS("btestfil.fit[PLANETS_ASCII][Density > 5.2]")); std::cout << "\nCurrent extension: " << pInfile->currentExtensionName() << std::endl; Column& col = pInfile->currentExtension().column("Density"); std::vector densities; // nRows should only include rows with density column vals > 5.2. const int nRows = col.rows(); col.read(densities, 1, nRows); for (int i=0; i pInfile(new FITS(inFile,Write,string("PLANETS_ASCII"))); FITS* infile = pInfile.get(); std::auto_ptr pNewfile(new FITS(newFile,Write)); ExtHDU& source = infile->extension("PLANETS_ASCII"); const string expression("DENSITY > 3.0"); Table& sink1 = pNewfile.get()->filter(expression,source,false,true); std::cout << sink1 << std::endl; // test 2: write a new HDU to the current file, overwrite false, read true. // AS OF 7/2/01 does not work because of a bug in cfitsio, but does not // crash, simply writes a new header to the file without also writing the // selected data. Table& sink2 = infile->filter(expression,source,false,true); std::cout << sink2 << std::endl; // reset the source file back to the extension in question. source = infile->extension("PLANETS_ASCII"); // test 3: overwrite the current HDU with filtered data. Table& sink3 = infile->filter(expression,source,true,true); std::cout << sink3 << std::endl; return 0; } CCfits/CHANGES0000644000225700000360000004573111666222327012533 0ustar cagordonlheaChanges for CCfits 2.4 - Fix to allow writing to compressed images of BITPIX=32 on 64-bit Linux platforms. This is done by storing the internal image array as type int rather than type long. Compatibility issue: this changes the return type of the ImageExt::image() function. (12/11) HDUCreator.cxx PHDUT.h ExtHDUT.h - Fixes made to the null-value versions of the write functions for primary and extension images. (12/11) PHDUT.h ExtHDUT.h - Added the ability of variable-width columns to perform the usual numerical data type casting when the write function input arrays do not contain exactly the same type of values as the Column object. This change also includes much internal code refactoring among the various vector column write functions. (11/11) ColumnT.h - To remove Intel compiler warnings, replaced switch/case with specialized templates in FitsNullValue functor. Also cleaned up integer type casting in deleteRows function, which fixes a bug in the Column object's internal storage of data. (11/11) FITSUtil.h ColumnVectorData.h - Fix for case of using basic FITS constructor on files containing multiple extensions with the same name AND version number. (11/11) ExtHDU.cxx HDUCreator.cxx, .h - BinTable's addColumn should call makeThisCurrent(). Otherwise user has to do it. (11/11) BinTable.cxx Changes for CCfits 2.3 - Bug fix for the setting of the column's lower data limit for the specific case of unsigned longs. It had been leaving this unitialized. (11/10) Column.cxx - When images are read from disk via CFITSIO, now copying directly to m_image valarray rather than a temporary C-style array. This cuts the required memory usage in half for this operation, important for very large images. (11/10) Image.h - New function: ExtHDU::isCompressed(), returns true if image is stored with compression. (11/10) ExtHDU.cxx, .h - For the basic version of the FITS constructor, when called in Write mode on a pre-existing file, it now automatically reads all of the headers rather than just the primary. It also now passes along the user's readDataFlag and optional primary keys settings. (11/10) FITS.cxx - In all FITS::read functions, now performs check to prevent multiple entries of the same HDU in the extensions multimap. (11/10) FITS.cxx, .h FITSBase.h - In the 2 deleteExtension functions, all extensions following the deleted one are now appropriately reindexed. (11/10) FITS.cxx - Fix to the PHDU::write functions which take a nullValue argument. Neither could be instantiated due to an invalid static_cast of pointers. (11/10) PHDUT.h - Changed Keyword's keytype() get function from protected to public. Did same for PHDU's simple() and extend() functions. (11/10) Keyword.h PHDU.h - Bug fix in Image's assignment operator. It was trying to swap with a const object. Since this isn't instantiated anywhere, compilers were letting it go. (11/10) Image.h - Bug fix in Table::copyData. New Columns' parent pointers must be reset to the new Table. Otherwise Columns created through the FITS::copy public function will not be modifiable. (02/10) Table.cxx Column.h - Bug fix for definition of ULBASE in FITSUtil. In the operation 1 << 31, the "1" must be explicitly cast to an unsigned long. Otherwise the compiler may treat it as a signed int, for which a left-shift of 31 bits is undefined. This was found to cause problems when reading images of type signed or unsigned long AND the receiving valarray type required casting, AND the platform was 64-bit Linux. (10/09) FITSUtil.cxx Changes for CCfits 2.2 - Bug fix for reading and writing complex data types to a scalar column. Also modified cookbook's readTable function to test this. ColumnData.cxx, .h (09/09) cookbook.cxx - Added public resetRead() function to Column. (09/09) Column.h - Renamed the private FITS::extension() function to extensionMap(). This is to prevent overload confusion with the public const extension() function. This mix-up was causing users to have to explicitly declare const FITS pointers to make sure the public function was the one called. (08/09) FITS.cxx, .h - Removed the storage of m_nullValue in ColumnData and ColumnVectorData classes. ColumnVectorData's private doWrite function now receives nullValue as an argument rather than relying on the data member. This fixes an obscure ColumnVectorData::writeData bug, where for valarrays of varying sizes being sent to fixed-width columns, a default null value was being sent to cfitsio even when user did not request it. More importantly, the removal of m_nullValue allows the Column::addNullValue to work when null value argument requires casting to match Column type. Also added new function Column::getNullValue. (08/09) Column.h ColumnT.h ColumnData.h ColumnVectorData.cxx, .h - Added public get functions column() and numCols() to ExtHDU, which were previously only available in the Table subclass. (08/09) ExtHDU.cxx, .h Table.h - Added optional flag to the ExtHDU and Table Column get-by-name functions, which allows for a case-insensitive search. This required renaming the protected column(string,Column*) function to setColumn. (08/09) AsciiTable.cxx BinTable.cxx ExtHDU.cxx, .h FITSUtil.cxx Table.cxx, .h - Converted all vector and valarray iterator syntax of form &v[v.size()] to either &v[0]+v.size() or v.end(). It was causing runtime exceptions on MS Visual C++ v9.0 when element bounds checking was enabled (the default). (08/09) ColumnVectorData.cxx, .h ExtHDUT.h Image.h PHDUT.h PrimaryHDU.h cookbook.cxx - Added pkg-config file for the stand-alone distribution. This also required slight changes to configure.in and Makefile.am. (08/09) CCfits.pc.in - Removed unused valarray "current" from ColumnVectorData::writeData (03/09) Changes for CCfits 2.1 - Modified several FITS constructors and FITS::open function to allow handling of extended filename syntax. (09/08) FITS.cxx, .h - FITS::resetPosition fix: it now erases the currentExtensionName string. (09/08) - Bug fix to FITS::read for case of missing EXTVER keyword when searching for HDU with extver > 1. (08/08) - Column.cxx now includes "fitsio.h" rather than "fitsio2.h" to get definitions of LONGLONG_MIN and MAX. This now makes CCfits dependent on cfitsio versions 3.08 or later. (07/08) Changes for CCfits 2.0 release 02/08 - The scale and zero set functions (public in HDU) will now write or update the keywords rather than call fits_set_bscale. They also now check for allowed image data type changes as a result of changing the bscale and bzero values. Added private zeroInit/scaleInit functions for use in HDUCreator. Also added new public function, HDU::suppressScaling. (01/08) ImageExt.h PHDU.cxx, .h HDU.cxx, .h HDUCreator.cxx - Changed access of HDU's bitpix set function from public to private. This requires that HDUCreator be a friend class of HDU. (01/08) HDU.h - Removed the redundant non-const version of FITS::filePointer and made the const version public instead of private. It also no longer returns by reference. (01/08) FITS.h, .cxx - Reorganized ImageExt constructor/assignment visibility and added virtual declaration to destructor. Also added docs. ImageExt.h - Added #include statements for and to allow compilation on g++ 4.3 (patch submitted by Aurelien Jarno) (01/08) ExtHDU.cxx FITS.cxx ColumnData.h FITSUtil.cxx HDU.cxx - Added the function getRowsize to the Table class, a wrapper for fits_get_rowsize. (Patrik Jonsson) Table.cxx, .h ExtHDU.cxx, .h - Made the const version of the Column parent accessor function public, and removed the non-const version. Column.h - Reorganized and improved keyword modification functions in HDU and Keyword classes. This includes new HDU addKey, copyAllKeys, and keywordCategories functions, and the removal of HDU::setKeyWord. Also fully implemented the Keyword value set function, with template specialization similar to the value get function, and added doc descriptions for both of these. (01/08) HDU.cxx, .h Keyword.cxx, .h KeywordT.h KeyData.cxx, .h - Bug fix to 2 of the 3 constructors which call the create() function. If create() returns false, they need to throw a CantCreate exception. They were appending the new primary hdu as an extension to the pre-existing file. (01/08) FITS.cxx, .h - To eliminate unnecessary dependences upon CFITSIO internals, removed the FITSUtil::copyFitsPtr function and everything using it: FITS copy ctor and clone functions, FITSBase copy ctor and clone functions. (Note that copyFitsPtr was never properly impelemented in its attempt to perform a deep copy of a fitsfile pointer.) (12/07) FITS.cxx, .h FITSBase.cxx, .h FITSUtil.cxx, .h - Added 4 new functions to HDU class to provide an interface to CFITSIO's checksum capabilities. (12/07) HDU.cxx, .h - Error messages are now stored in the FitsException base class, which allows them to be retrieved and copied with the public function message(). (12/07) FitsError.cxx, .h Column.cxx, ExtHDU.cxx, FITS.cxx FITSUtil.cxx HDU.cxx Keyword.cxx Table.cxx - For Column write functions (both scalar and vector), all cases where the nulval pointer = 0 were treated as (*nulval) = 0 in the lower-level calls to fits_write_colnull. This effectively meant there was no way for the user to turn off null value checking. (12/07) ColumnT.h ColumnData.h ColumnVectorData.h - Calling FITS constructor in Write mode on a read-only file was causing a segmentation fault. (12/07) FITS.cxx Changes for CCfits 1.8 release 10/07 - Redid the writeData functions (and their private helper functions) in ColumnVectorData. This allows the writing of variable length column arrays, which hadn't been working, and now allows writing a partial section of a fixed length column without overwriting the entire row. ColumnVectorData.cxx, .h - In HDU::readAllKeys, do not throw if unable to read a particular individual keyword. Instead, skip and move to the next keyword. This will allow this function to be used even if there undefined keywords. HDU.cxx Changes for CCfits 1.7 release 06/07 - FITS::copy function now creates a corresponding object for the newly created HDU. Previously it only modified the file without updating or adding to the FITS extension map. (6/07) FITS.cxx - Bug fix for reading in compressed images. It had been using the BITPIX and NAXIS keywords when it should have ben using ZBITPIX and ZNAXIS. These changes were based on a patch submitted by Patrik Jonsson. HDU.cxx HDUCreator.cxx - BSCALE was being ingored if the BZERO keyword didn't also exist. HDUCreator.cxx. - Same type of bug fix as below, but for addNullValue in ColumnT.h and ColumnVectorData::setDimen(). (3/07) ColumnT.h ColumnVectorData.h - Bug fix to Column::setLimits. It had been assigning char pointers from temporary string objects using c_str(). (Fix submitted by Jeremy Sanders) (2/07) Column.cxx Changes for CCfits 1.6 release 11/06 - Added capbility to write compressed images, including 6 new wrapper public functions in FITS class. FITS.cxx,.h FITSUtil.cxx,.h PHDU.cxx FITSBase.cxx,.h - In FITS::addImage, corrected the logic which checks for a pre-existing image extension with the same version number. FITS.cxx - CFITSIO 3.02 renamed fitsfile struct member rice_nbits to noise_nbits. Made corresponding change in copyFitsPtr function in FITSUtil.cxx. As it stands, this makes this version of CCfits incompatible with earlier versions of CFITSIO FITSUtil.cxx - In FITS.h definition, removed both friend declarations of HDUCreator Make functions. It seems neither function needs to be a friend, and one of them is actually private. The standard is vague about this, and anyway some compilers (Visual C++ 2002 or 2003) don't allow it. FITS.h - Bug fix in Make function of HDUCreator.cxx. When creating a new ImageExt (and not the primary), it was only passing the version number along for float and double types. This causes problems when there is more than 1 image extension with the same name, and it needs the version number to distinguish them. HDUCreator.cxx - A couple of bug fixes to the first/last/stride version of PHDU read image subset. It was not passing the proper parameters to fits_read_subset, and was not always correctly resizing the m_image array. Image.h Changes for CCfits 1.5 release 7/06 - More thorough fix to PHDUT.h write function: Now genuinely handles the stride vector parameter. (4/06) Image.h PHDUT.h PrimaryHDU.h -In BinTable::addColumn function for case of strings, it was outputing the column format incorrectly as "A". Should have been "A". - In BinTable and Table constructor, now checks for columnUnits vector size rather than assume it's filled in. This is necessary if units are to be an optional parameter for the FITS::addTable function, as claimed in the docs. Table.cxx BinTable.cxx - Modifications needed to fix compile errors on certain platforms with g++ 4.0.x. These are functions that haven't been instantiated, which is why other compilers didn't complain about them. In ExtHDUT.h read function, needed explicit cast to size_t to make both variables in std::min call the same type. Same fix made in PHDUT.h read function. Also in PHDUT.h write function, several calls to PrimaryHDU::writeImage had the wrong number of arguments. (01/06) Changes for CCfits 1.4 release 11/05 - Fixed reading in of BSCALE and BZERO. Previously these keyword values were not being saved in getScaling function. HDUCreator::getScaling (10/05) - Now reads in all floating-point keyword values as doubles rather than floats. In conjunction, needed to allow Keyword casting from doubles to floats to keep things backward compatible KeywordCreator.cxx, KeywordT.h, Keyword.cxx, .h. (8/05) - In ColumnT.h read function which takes row as a parameter, test and throw for case of row out-of-bounds of table. - Memory leak fix in HDU.cxx. Everywhere insertions into m_keyWord map were taking place, needed to check for previously existing entry with same key name and delete if it existed. FITS::read often does insertions twice with the same Keyword, which was causing a memory leak. Also fixed a couple minor leaks in HDU::writeDate. (C. Gordon 6/05) - Exception safety / mem leak fix in FITS.cxx and FITSBase.cxx. All FITS constructors (except copy c-tor) now use auto_ptr when creating FITSBase* m_FITSImpl. Also FITSBase destructor now checks if it needs to close file, indicated by non-zero m_fptr. To make this work, FITS::close now resets fptr to 0 after it closes file. - Add another case of allowed casting of keyword values, this time from strings to int/float/double if the string contains an integer value KeywordT.h (C.Gordon 5/05) Changes for CCfits 1.3 release 4/05 - modify KeywordCreator getKeyword functions to allow reading of keyword value string long format. (C. Gordon) - Fixed HDUCreator::Make and ExtHDU constructor so that extensions with no names are now properly handled on input. (C. Gordon) - Added ability to ready in column data of type LONGLONG from binary tables. - (Important) Added implicit casting of keyword values entered as ints to keywords of type float and double. Previously, the entered key value had to be of exactly the same type as the keyword, otherwise an exception was thrown. Changes for CCfits 1.2 release 4/03 a) add configuration support for building on Windows 2000 b) check for build problems on Mac OS X Darwin (6.4) c) fix problem with vector column row counts (ColumnVectorData::resizeDataObject) d) remove error in HDU keyword strings (HDU::readHDUInfo) e) remove "one off" error in image writing (Image::writeImage) f) fix write problem for Column TUNIT keyword (AsciiTable::addColumn, BinTable::addColumn) (P. Jonsson) g) fix image subset writing code in ExtHDU (P. Jonsson) (ExtHDU::write) Changes for CCfits 1.1.1 release 9/19/02; originator of problem report shown in parentheses where relevant. a) modify most general FITS ctor so that the version argument works properly as a defaulted parameter (J. Miller) b) add flush() method to FITS class to force cfitsio buffers to be flushed to disk on request (C. Berst) c) add instructions to flush buffers after image write operation (C. Berst) d) fix persistent warning about creating new files (C. Berst) e) remove trailing blanks from read string keywords (P. Jonsson) f) add new override function addKey for string literals g) check compilation and correct operation on gcc 3.2 / Linux 2.4 kernel Changes in preparation for CCfits 1.1 release 1a) fixed #include in cookbook.cxx (code originally designed to include installed library) b) added variable of type double to pass to pow in cookbook.cxx [R. Mathar, P. Jonsson] b) removed numerous break statements from switch / case statements where unreachable [code returns before end of case] - producing compiler warnings c) removed numerous instances of signed/unsigned comparisons to remove compiler warnings d) fixed FITS file copying constructor to produce valid primary [ R. Mathar ] e) fixed incorrect shift operator usage in Column::getType [R. Mathar] f) fixed incorrect type for TDOUBLE argument in Column::getType [R. Mathar] g) removed exception specifications throughout except for throw() ( style revision ) h) add null terminator for TFORM keywords for case where no header present [R. Mathar] i) fix error in iterator type in HDU::readKeys [R. Mathar] j) added support for unsigned integer-type images [J. Barnes] k) fixed problem with copying Table data likely to lead to memory access violations [C. Gordon] l) removed potentially conflicting colType argument from table creation call (FITS::addTable). The type of the column is now determined from the TFORM keyword. m) support for unsigned table column data [R. Mathar] n) reimplemented HDU::readAllKeys so that it does not use HDU::addKey [R. Mathar] o) added various missing makeThisCurrent() calls to ensure FITS pointer addresses the correct HDU [P. Jonsson] p) added code to cookbook program to read Primary HDU user keywords. q) added code to resolve data types into strings for keyword output. r) fixed problem whereby new image extensions were not written to disk FITS file [P. Jonsson] s) fixed various issues switching between HDUs during writes. t) added support for complex keywords u) reworked Column templates to avoid throwing exceptions where implicit datatype conversion is called for. v) added many overloaded functions to support complex data I/O. Implicit conversion between float & double complex data is allowed. Other attempted conversion throw exceptions. w) modify HDU::scale(double value), HDU::zero(double value) &c. for Columns to call fits_set_bscale etc, to change automatic scalings. 2a) configuration support for HP-UX /gcc-2.95.2. Compilation now includes -ansi flag. [R. Mathar] b) configuration support for AIX/kcc. explicit Makefile.kcc added to distribution [P. Jonsson] c) added verbose warning message flags for Solaris (+w -verbose=template) CCfits/README.INSTALL0000644000225700000360000001136111104412115013474 0ustar cagordonlheaTo build and install CCfits from source code on a UNIX-like (e.g. UNIX, Linux, or Cygwin) platform, take the following steps. For building on a Microsoft Windows platform with Visual Developer Studio, see below. =============================================================================== Instructions for Building CCfits on UNIX-like platforms: =============================================================================== 1. Configure By default, the GCC compiler and linker will be used. If you want to compile and link with a different compiler and linker, you can set some environment variable before running the configure script. For example, to use Sun's C++ compiler, do the following: > setenv CXX CC (csh syntax) or > export CXX=CC (bash syntax) You can set the absolute path to the compiler you want to use if necessary. CCfits requires that the CFITSIO package, version 3.08 or later, is available on your system. See http://heasarc.gsfc.nasa.gov/docs/software/fitsio/fitsio.html for more information. The configure script that you will run takes an option to specify the location of the CFITSIO package. If the CFITSIO package is installed in a directory consisting of a 'lib' subdirectory containing "libcfitsio.a" or "libcfitsio.so" and an 'include' subdirectory containing "fitsio.h", then you can run the configure script with a single option. For example, if the cfitsio package is installed in this fashion in /usr/local/cfitsio/ then the configure script option will be --with-cfitsio=/usr/local/cfitsio If the CFITSIO package is not installed in the above manner, then you need to run the configure script with two options, one to specify the include directory and the other to specify the library directory. For example, if the cfitsio package was built in /home/user/cfitsio/ then the two options will be --with-cfitsio-include=/home/user/cfitsio --with-cfitsio-libdir=/home/user/cfitsio For users of HEASOFT (instead of stand-alone CFITSIO): Note that modern distributions of HEASOFT only include a "libcfitsio_X.XX.so" library by default, but the configure script needs to find "libcfitsio.so", so you will need to create a symbolic link in $HEADAS/lib/ linking libcfitsio.so -> libcfitsio_X.XX.so in order for CCfits to configure properly. You can then configure CCfits using "--with-cfitsio=$HEADAS". You have the option of carrying out the build in a separate directory from the source directory or in the same directory as the source. In either case, you need to run the configure script in the directory where the build will occur. For example, if building in the source directory with the cfitsio directory in /usr/local/cfitsio/ then the configure command should be issued like this: > ./configure --with-cfitsio=/usr/local/cfitsio If you do the build in a separate directory from the source, you may need to issue the configure command something like this: > ../CCfits/configure --with-cfitsio=/usr/local/cfitsio The configure script will create the Makefile with the path to the compiler you choose (or GCC by default), and the path to the CFITSIO package. The configure script has other options, such as the install location. To see these options type > ./configure --help 2. Build Building the C++ shared library and Java classes will be done automatically by running make without arguments like this: > gmake 3. Install To install, type: > make install The default install location will be /usr/local/lib for the library and /usr/local/include for the header files. You can change this with the --prefix option when you configure, or with something like... > make DESTDIR=/usr/local/CCfits install =============================================================================== Instructions for Microsft Windows build: =============================================================================== Compiling CCfits with MS VC++ requires VC++ 7.0 or later. This is the compiler that comes with Visual Studio.NET. Earlier versions of the compiler has too many defects in the area of instanciating templates. Take the following steps. 1. Compile the C++ code. Open the vs.net/CCfits/CCfits.sln file with Visual Studio.NET. The includes paths have been set to find the cfitsio build directory at the same level as the CCfits directory. If this is not the case, use Visual Studio.NET to edit the include paths and extra library paths to where you have cfitsio installed. Next, just use the build icon or the build menu item. To build the test program, cookbook, use the vs.net/cookbook.cookbook.sln file Author: Paul_Kunz@slac.stanford.edu Revised 1 Nov 2006 by Bryan Irby CCfits/License.txt0000644000225700000360000000260310374677170013657 0ustar cagordonlheaCopyright (Unpublished--all rights reserved under the copyright laws of the United States), U.S. Government as represented by the Administrator of the National Aeronautics and Space Administration. No copyright is claimed in the United States under Title 17, U.S. Code. Permission to freely use, copy, modify, and distribute this software and its documentation without fee is hereby granted, provided that this copyright notice and disclaimer of warranty appears in all copies. DISCLAIMER: THE SOFTWARE IS PROVIDED 'AS IS' WITHOUT ANY WARRANTY OF ANY KIND, EITHER EXPRESSED, IMPLIED, OR STATUTORY, INCLUDING, BUT NOT LIMITED TO, ANY WARRANTY THAT THE SOFTWARE WILL CONFORM TO SPECIFICATIONS, ANY IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND FREEDOM FROM INFRINGEMENT, AND ANY WARRANTY THAT THE DOCUMENTATION WILL CONFORM TO THE SOFTWARE, OR ANY WARRANTY THAT THE SOFTWARE WILL BE ERROR FREE. IN NO EVENT SHALL NASA BE LIABLE FOR ANY DAMAGES, INCLUDING, BUT NOT LIMITED TO, DIRECT, INDIRECT, SPECIAL OR CONSEQUENTIAL DAMAGES, ARISING OUT OF, RESULTING FROM, OR IN ANY WAY CONNECTED WITH THIS SOFTWARE, WHETHER OR NOT BASED UPON WARRANTY, CONTRACT, TORT , OR OTHERWISE, WHETHER OR NOT INJURY WAS SUSTAINED BY PERSONS OR PROPERTY OR OTHERWISE, AND WHETHER OR NOT LOSS WAS SUSTAINED FROM, OR AROSE OUT OF THE RESULTS OF, OR USE OF, THE SOFTWARE OR SERVICES PROVIDED HEREUNDER. CCfits/file1.pha0000644000225700000360000003435707503643533013235 0ustar cagordonlheaSIMPLE = T / file does conform to FITS standard BITPIX = -32 / number of bits per data pixel NAXIS = 0 / number of data axes EXTEND = T / FITS dataset may contain extensions COMMENT FITS (Flexible Image Transport System) format defined in Astronomy andCOMMENT Astrophysics Supplement Series v44/p363, v44/p371, v73/p359, v73/p365.COMMENT Contact the NASA Science Office of Standards and Technology for the COMMENT FITS Definition document #100 and other FITS information. DATE = '22/06/95' / FITS file creation date (dd/mm/yy) CONTENT = 'PHA SPECTRUM' / SPECTRUM xtens (at least) present ORIGIN = ' ' / organization which created this file END XTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / 8-bit bytes NAXIS = 2 / 2-dimensional binary table NAXIS1 = 14 / width of table in bytes NAXIS2 = 64 / number of rows in table PCOUNT = 0 / size of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 5 / number of fields in each row TTYPE1 = 'CHANNEL ' / Pulse Height Analyser (PHA) Channel TFORM1 = 'I ' / data format of the field: 2-byte INTEGER TTYPE2 = 'RATE ' / Counts per second per channel TFORM2 = 'E ' / data format of the field: 4-byte REAL TUNIT2 = 'count/s ' / physical unit of field TTYPE3 = 'STAT_ERR' / Statistical error on RATE TFORM3 = 'E ' / data format of the field: 4-byte REAL TUNIT3 = 'count/s ' / physical unit of field TTYPE4 = 'QUALITY ' / Quality flag of this channel (0=good) TFORM4 = 'I ' / data format of the field: 2-byte INTEGER TTYPE5 = 'GROUPING' / Grouping flag for channel (0=undefined) TFORM5 = 'I ' / data format of the field: 2-byte INTEGER EXTNAME = 'SPECTRUM' / name of this binary table extension HDUCLASS= 'OGIP ' / format conforms to OGIP standard HDUCLAS1= 'SPECTRUM' / PHA dataset (OGIP memo OGIP-92-007) HDUVERS1= '1.1.0 ' / Version of format (OGIP memo OGIP-92-007a) HDUCLAS2= 'NET ' / Bkgd-subtracted PHA Spectrum HDUCLAS3= 'RATE ' / PHA data stored in count/s TLMIN1 = 1 / Lowest legal channel number TLMAX1 = 128 / Highest legal channel number TELESCOP= 'EXOSAT ' / mission/satellite name INSTRUME= 'ME ' / instrument/detector name DETNAM = ' AR ' / specific detector name in use FILTER = 'NONE ' / filter in use EXPOSURE= 2100.000000 / exposure (in seconds) AREASCAL= 824.679993 / area scaling factor BACKFILE= 'back1.pha' / associated background filename BACKSCAL= 1.000000 / background file scaling factor CORRFILE= 'NONE ' / associated correction filename CORRSCAL= 0.000000 / correction file scaling factor RESPFILE= 'resp1.rsp' / associated redistrib matrix filename ANCRFILE= ' ' / associated ancillary response filename PHAVERSN= '1992a ' / OGIP classification of FITS format DETCHANS= 128 / total number possible channels CHANTYPE= 'PHA ' / channel type (PHA, PI etc) POISSERR= F / Poissonian errors not applicable SYS_ERR = 0 / no systematic error specified HISTORY SF file opened by RD_SFOPN 1.0.0 HISTORY (SF) PHA file history records HISTORY - From file1.asc by MKPHA at 14:30:18 25-Jul-90 HISTORY - From file1.log by chanpha at 15:07:32 24-JUL-90 from XANADU:[SPECT HISTORY - From XANADU:[SPECTRAL.SESSION]FILE1.PHA;2 HISTORY - From MEG172.PHA HISTORY - HP file name:MEG172 HISTORY - Deadtime correction= 1.1081 HISTORY - Deadtime applied HISTORY HISTORY HISTORY HISTORY SF File Info package scanned by RD_SFINFO 1.0.0 HISTORY SF Source Info package scanned by RD_SFSINFO 1.0.1 HISTORY SF data base package scanned by RD_SFDBASE 0.9.0 HISTORY SF selectors package scanned by RD_SFSLCT 1.1.0 HISTORY SF PHA data package scanned by RD_SFPHA 0.8.0 HISTORY SF Grouping package scanned by RD_SFGRP 1.0.0 HISTORY EXOSAT ME conversion by CNV_EXOME1.0.0 HISTORY SF EXOSAT ME package scanned by RD_SFEXOME 1.0.1 HISTORY FITS SPECTRUM extension written by WTPHA1 3.1.2 COMMENT COMMENT ***** Package "ass. files " ***** COMMENT Background Filename :back1.pha COMMENT Response Filename :resp1.rsp COMMENT Correction Filename :none COMMENT ***** Package "file info " ***** COMMENT Detector Identity :EXOSAT ME AR H2 COMMENT No. of data bins : 64 COMMENT Unbinned data channels : 128 COMMENT Integration time(secs) : 2100.00 COMMENT On source area (cm**2) : 824.68 COMMENT Background scale factor: 1.000 COMMENT Correction scale factor: 0.000 COMMENT Indices : 0.0000000 0.0000000 0.0000000COMMENT ***** Package "source info " ***** COMMENT Observation Epoch : 0.00000000E+00 COMMENT SHF start time: 1.63823584E+08 (1985 70 2 33 4) COMMENT SHF end time: 1.63825680E+08 (1985 70 3 8 0) COMMENT 1950 RA and DEC and Roll COMMENT source vector: 0.00000000E+00 0.00000000E+00 0.00000000E+00COMMENT source name : GX301-2 COMMENT ***** Package "pha per sec " ***** (located) COMMENT ***** Package "grouping " ***** COMMENT ....+ +++++ +++++ +++++ +++++ +++++ +++++ +++++ +++++ +++++ COMMENT +++++ +++++ +++++ +++.. ..... ..... ..... ..... ..... ..... COMMENT ... Grouping card OK by RD_SFGRP COMMENT Detector type (AX=both argon & xenon) - AR COMMENT revision level of info used in production of file 1 COMMENT shf key of creation date 309176755 (1989 291 10 25 55) COMMENT offset angle of first half(average for multiple offsets-114.43965 COMMENT offset angle of second half 1.75040 CREATOR = 'SF2PHA2.1.1' / s/w task which wrote this dataset HISTORY Observation Info written by WT_OBSINFO 1.1.1 OBJECT = ' GX301-2' / Object name PROC_VER= ' 1' / Revision level of Processing System PROC_DAT= '18/10/89' / Date on which Processing System run PROC_TIM= '10:25:55' / Time at which Proc System run (on PROC_DAT) HISTORY Observation Date/Time Info written by WTTOBS 1.0.1 DATE-OBS= '11/03/85' / Nominal UT date of obs start (dd/mm/yy) TIME-OBS= '02:33:04' / Nominal UT time of obs start (hh:mm:ss) DATE-END= '11/03/85' / Nominal UT date of obs end (dd/mm/yy) TIME-END= '03:08:00' / Nominal UT time of obs end (hh:mm:ss) MJD-OBS = 4.613511851852E+04 / Mean MJD of observation HISTORY Timing Info written by WTFTIM 1.0.2 ONTIME = 2096.000000 / Total time on source (seconds) DEADAPP = T / Deadtime correction applied ? DEADC = 0.902446 / Deadtime correction factor LIVETIME= 1891.525879 / Total time on source corrected for deadtime (seVIGNAPP = T / Vignetting correction applied ? MJDREF = 4.423900000000E+04 / Mission reference time (in MJD) TIMESYS = '1980 1 1 00:00:00' / Time frame system in use TIMEUNIT= 's ' / Units for TSTART, TSTOP & TIMEZERO keywords TSTART = 1.638235840000E+08 / Start time in TIMESYS frame in TIMEUNIT units TSTOP = 1.638256800000E+08 / Stop time in TIMESYS frame in TIMEUNIT units TELAPSE = 1.074461E+24 / Total elapsed time between TSTART & TSTOP in seTIMEZERO= 1.638235840000E+08 / Time zero off-set in TIMESYS frame & TIMEUNIT uCLOCKAPP= F / Clock correction applied ? TIMEREF = 'LOCAL ' / Reference frame used for times TASSIGN = 'SATELLITE' / Location where time assignment performed HISTORY RADECSYS & EQUINOX keywords written by WT_OBJRADEC 1.0.1 RADECSYS= 'FK4 ' / Stellar Reference frame used for EQUINOX EQUINOX = 1950.000000 / Equinox of all RA,dec specifications (AD year) HISTORY Pointing Info written by WT_OBJRADEC 1.0.1 RA_OBJ = 0.000000 / RA of object (degrees) DEC_OBJ = 0.000000 / dec of object (degrees) COMMENT ** WT_OBJRADEC 1.0.1 WARNING: RA_OBJ,DEC_OBJ zero END >¸Ôþ= 1300 #define SPEC_TEMPLATE_DECL_DEFECT 1 #endif /** Define if compiler can not resolve ambiguity in overloaded template functions. This was first seen with Visual Studio 6.0 and presists in 7.0 to a less degree. Use this one for VC++ 7.0 TEMPLATE_AMBIG_DEFECT for VC++ 6.0. */ #define TEMPLATE_AMBIG7_DEFECT 1 /** Define if compiler library has instead of . */ #undef SSTREAM_DEFECT # pragma warning(disable:4244) // conversion from double to float # pragma warning(disable:4305) // truncation from const double to const float # pragma warning(disable:4800) // forcing value to bool (performance warning) #if _MSC_VER < 1300 /* Turn off annoying warning. */ # pragma warning(disable:4250) // inherits via dominance # pragma warning(disable:4786) // '255' characters in the debug information /** Define the value of pi which appears to be missing from Dev Studio. */ #ifndef M_PI #define M_PI 3.14159265358979323846 #endif /** Define if specialized template implemeenation must appear within the corresponding header file and be inline. This problem first appeared with VC++ 6.0. */ #define SPEC_TEMPLATE_IMP_DEFECT 1 /** Define if compiler can not resolve ambiguity in overloaded template functions. This was first seen with Visual Studio 6.0 and presists in 7.0 to a less degree. */ #define TEMPLATE_AMBIG_DEFECT 1 /** Define if function `terminate()' does not exist in . This was first found in VC++ 6.0. */ #define TERMINATE_DEFECT /** Define if bind2nd doesn't work calling member function that returns void. This works around the errror error C2562: '()' : 'void' function returning a value which results when compiling bind2nd template function. */ #define BIND2ND_DEFECT 1 /** Define if a function in derived class overrides a function in a base class only by the return type, and the return type in the derived class only differs because it is a derived type of the one defined in the base class. This works around the error error C2555: with MS VC++ 6.0 sp5 and earlier. */ #define CLONE_DEFECT 1 /** Define if vector ::iterator doesn't work unless using namespace std; statement is made. */ #define ITERATOR_MEMBER_DEFECT 1 /** Define if STL functions doesn't work with IteratorBase. This is probably a defect in IteratorBase class than a defect in the compiler.*/ #define ITERATORBASE_DEFECT 1 /** Define if mem_fun doesn't always work when used to call member with one argument and the obsolete mem_fun1 must be used.. */ #define MEMFUN1_DEFECT 1 /** Define if STL transform function doesn't work with unary functions in cmath */ #define TRANSFORM_DEFECT 1 /** Define if compiler prefers someting like std::cos ( const valarray & ) instead of std::cos ( double ). */ #define VALARRAY_DEFECT 1 namespace std { /** definition of standard C++ library max() function for compilers that don't supply it. Note should do only less than comparison. */ template < class T > inline const T& max ( const T & a, const T & b ) { // Break this into two lines to avoid an incorrect warning with // Cfront-based compilers. const T & retval = a < b ? b : a; return retval; } /** definition of standard C++ library min() function for compilers that don't supply it. Note should do only less than comparison. */ template < class T > inline const T& min ( const T & a, const T & b) { // Break this into two lines to avoid an incorrect warning with // Cfront-based compilers. const T & retval = b < a ? b : a; return retval; } /** definition of standard C++ library abs() function for compilers that don't supply it. */ template < class T > inline const T & abs ( const T & a ) { const T & retval = a < 0 ? -a : a; return retval; } } //end namespace std:: #endif CCfits/vs.net/0000755000225700000360000000000011667507535012753 5ustar cagordonlheaCCfits/vs.net/Makefile.am0000644000225700000360000000060707640441372015002 0ustar cagordonlhea# # * Copyright (C) 2003 The Board of Trustees of # * The Leland Stanford Junior University. All Rights Reserved. # # $Id: Makefile.am,v 1.1 2003/03/27 00:16:58 pfkeb Exp $ # # Author: Paul_Kunz@slac.stanford.edu # # The following is set, otherwise it would have to follow GNU conventions. AUTOMAKE_OPTIONS = foreign DIST_DIRS = CCfits cookbook EXTRA_DIST = MANIFEST $(DIST_DIRS) CCfits/vs.net/Makefile.in0000644000225700000360000002217111667502504015012 0ustar cagordonlhea# Makefile.in generated by automake 1.9.6 from Makefile.am. # @configure_input@ # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, # 2003, 2004, 2005 Free Software Foundation, Inc. # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY, to the extent permitted by law; without # even the implied warranty of MERCHANTABILITY or FITNESS FOR A # PARTICULAR PURPOSE. @SET_MAKE@ # # * Copyright (C) 2003 The Board of Trustees of # * The Leland Stanford Junior University. 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CCfits/vs.net/CCfits/0000755000225700000360000000000011667501510014111 5ustar cagordonlheaCCfits/vs.net/CCfits/.cvsignore0000644000225700000360000000003207640425025016106 0ustar cagordonlheaDebug Release *.ncb *.suo CCfits/vs.net/CCfits/CCfits.sln0000644000225700000360000000157307640425025016012 0ustar cagordonlheaMicrosoft Visual Studio Solution File, Format Version 7.00 Project("{8BC9CEB8-8B4A-11D0-8D11-00A0C91BC942}") = "CCfits", "CCfits.vcproj", "{D21AEDFD-0753-4905-B5DD-21083E8BDE7B}" EndProject Global GlobalSection(SolutionConfiguration) = preSolution ConfigName.0 = Debug ConfigName.1 = Release EndGlobalSection GlobalSection(ProjectDependencies) = postSolution EndGlobalSection GlobalSection(ProjectConfiguration) = postSolution {D21AEDFD-0753-4905-B5DD-21083E8BDE7B}.Debug.ActiveCfg = Debug|Win32 {D21AEDFD-0753-4905-B5DD-21083E8BDE7B}.Debug.Build.0 = Debug|Win32 {D21AEDFD-0753-4905-B5DD-21083E8BDE7B}.Release.ActiveCfg = Release|Win32 {D21AEDFD-0753-4905-B5DD-21083E8BDE7B}.Release.Build.0 = Release|Win32 EndGlobalSection GlobalSection(ExtensibilityGlobals) = postSolution EndGlobalSection GlobalSection(ExtensibilityAddIns) = postSolution EndGlobalSection EndGlobal CCfits/vs.net/CCfits/CCfits.vcproj0000644000225700000360000001301507657002037016515 0ustar cagordonlhea CCfits/vs.net/cookbook/0000755000225700000360000000000011667501511014545 5ustar cagordonlheaCCfits/vs.net/cookbook/.cvsignore0000644000225700000360000000004007640430372016541 0ustar cagordonlheaDebug Release *.fit *.ncb *.suo CCfits/vs.net/cookbook/cookbook.sln0000644000225700000360000000260007640425026017071 0ustar cagordonlheaMicrosoft Visual Studio Solution File, Format Version 7.00 Project("{8BC9CEB8-8B4A-11D0-8D11-00A0C91BC942}") = "cookbook", "cookbook.vcproj", "{9ED49C71-F4D4-4CA2-979F-CD53B285E0CB}" EndProject Project("{8BC9CEB8-8B4A-11D0-8D11-00A0C91BC942}") = "CCfits", "..\CCfits\CCfits.vcproj", "{D21AEDFD-0753-4905-B5DD-21083E8BDE7B}" EndProject Global GlobalSection(SolutionConfiguration) = preSolution ConfigName.0 = Debug ConfigName.1 = Release EndGlobalSection GlobalSection(ProjectDependencies) = postSolution {9ED49C71-F4D4-4CA2-979F-CD53B285E0CB}.0 = {D21AEDFD-0753-4905-B5DD-21083E8BDE7B} EndGlobalSection GlobalSection(ProjectConfiguration) = postSolution {9ED49C71-F4D4-4CA2-979F-CD53B285E0CB}.Debug.ActiveCfg = Debug|Win32 {9ED49C71-F4D4-4CA2-979F-CD53B285E0CB}.Debug.Build.0 = Debug|Win32 {9ED49C71-F4D4-4CA2-979F-CD53B285E0CB}.Release.ActiveCfg = Release|Win32 {9ED49C71-F4D4-4CA2-979F-CD53B285E0CB}.Release.Build.0 = Release|Win32 {D21AEDFD-0753-4905-B5DD-21083E8BDE7B}.Debug.ActiveCfg = Debug|Win32 {D21AEDFD-0753-4905-B5DD-21083E8BDE7B}.Debug.Build.0 = Debug|Win32 {D21AEDFD-0753-4905-B5DD-21083E8BDE7B}.Release.ActiveCfg = Release|Win32 {D21AEDFD-0753-4905-B5DD-21083E8BDE7B}.Release.Build.0 = Release|Win32 EndGlobalSection GlobalSection(ExtensibilityGlobals) = postSolution EndGlobalSection GlobalSection(ExtensibilityAddIns) = postSolution EndGlobalSection EndGlobal CCfits/vs.net/cookbook/cookbook.vcproj0000644000225700000360000000610510200711602017564 0ustar cagordonlhea CCfits/html/0000755000225700000360000000000011667506644012502 5ustar cagordonlheaCCfits/html/ccfitschange_sff.pl0000755000225700000360000001022507645616321016314 0ustar cagordonlhea#!/usr1/local/bin/perl5 # Bob Crosier 3/8/95 # Bob Crosier 3/22/95 (modified from webclean.pl) # Bob Crosier 6/02/95 required the RunningDisplay subroutine # This Perl script MAKES CHANGES TO FILES; BE CAREFUL # Pass this Perl script a bunch of filenames on STDIN # (e.g. by piping it the output of 'find' or 'ls') # This script will make changes within the files, but when done, the files # will have the same owner/permissions. # #This Perl script removes external links and replaces them with the URL. #------------------------------------------------------------------------------ # This require has a number of useful support subroutines. require "support_subs.pl"; $program = "shuttlechange"; if ($ARGV[0] ne '') { $diff_dump = "diff_dump"; $diff_tmp = "DIFFTMP"; if (-e $diff_dump) { unlink $diff_dump; } } if ($ARGV[0] ne 'x') { $write_flag = 1; } $greeting = <<"Greeting"; THIS PERL SCRIPT CAN CHANGE FILES ! This script reads in filenames on STDIN (so pass it output from 'find' or 'ls') Any comments from this run will go into file $program.comments. Any warnings or error messages will go into file $program.warn. I will always ignore the file "heasarc_results.html", which is the MOMspider result file, a huge ~ 16MB file, and not relevant to these changes. Also, heasarc_results_small.html will be ignored. I will use STDOUT for a running display of files processed... Greeting print $greeting; open(COMMENTS, ">$program.comments") || warn "Cannot open file $program.comments: $!"; open(STDERR, ">$program.warn") || warn "Cannot open file $program.warn: $!"; $num_files = 0; while ($full_filename = ) { chop($full_filename); &RunningDisplay( $full_filename ); # I catch if the current filename is that of a zero length or unwriteable (to me) # file, and if not, read the entire file into memory (Perl: no limits) before # I make any changes to the text, then write it all back out to the same # filename, preserving owner and permissions. $current_file = ""; if (-z $full_filename) { warn "File $full_filename has 0 size ! \n"; } elsif (! -w $full_filename ) { warn "File $full_filename is not writeable to me ! \n"; } elsif ( $basename eq "heasarc_results.html" ) { warn "File $full_filename is being deliberately skipped. \n"; } elsif ( $basename eq "heasarc_results_small.html" ) { warn "File $full_filename is being deliberately skipped. \n"; } else { open(HTMLIN, $full_filename) || warn "Cannot open file $full_filename for input: $!"; # Read the entire file into variable $current_file $string_found_flag = 0; while ($line = ) { $current_file .= $line; } # Following are example search and replace statements. This is where you have # to put in your own. It must end with $string_found_flag = 1. The search # must use "isg" if you want it to be a global search (g) that ignores case (i) # and looks at more than one line at a time (s). # to remove shuttle_left and shuttle_right from files if ($current_file =~ /Inheritance diagram for(.*?)usemap/isg) { $current_file =~ s/Inheritance diagram for(.*?)usemap/Inheritance diagram for$1alt="Inheritance diagram" usemap/isg; $string_found_flag = 1; } # Write any changed text back into the exact same filename if ($string_found_flag) { if ($write_flag) { open(HTMLOUT, ">$full_filename") || warn "Cannot open file $full_filename for output: $!"; print HTMLOUT $current_file; close(HTMLOUT); if ($diff_dump ne '') { system("cp $full_filename $diff_tmp"); } } else { open(DD,">$diff_tmp")||warn "Could not write $diff_tmp!"; print DD $current_file; close(DD); } if ($diff_dump ne '') { system("echo Comparing $diff_tmp to $full_filename >> $diff_dump"); system("diff $diff_tmp $full_filename >> $diff_dump"); unlink $diff_tmp; } } } close(HTMLIN); } print "\nDone \n"; close(COMMENTS); # end of shuttlechange.pl CCfits/html/support_subs.pl0000755000225700000360000000213407645616321015605 0ustar cagordonlhea# This is support_subs.pl. It will be # 'require'd in the web scripts, so it # must return 1 at the very end. sub RunningDisplay{ # $full_filename is passed in. local($full_filename) = @_; # Get the basename for the running display of files processed if ( $full_filename =~ m#/# ) { $full_filename =~ m#/([^/]+)$#; $basename = $1; } else { $basename = $full_filename; } $num_files++; # I want a running display of form: # num_field mesg_field name_field e.g. # 12378 files processed so far... some_random_file.html $num_files_string = sprintf ("%u", $num_files); $num_field = length $num_files_string; $mesg = " files processed so far... 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J=this[0],G=J.offsetParent,F=J,O=J.ownerDocument,M,H=O.documentElement,K=O.body,L=O.defaultView,E=L.getComputedStyle(J,null),N=J.offsetTop,I=J.offsetLeft;while((J=J.parentNode)&&J!==K&&J!==H){M=L.getComputedStyle(J,null);N-=J.scrollTop,I-=J.scrollLeft;if(J===G){N+=J.offsetTop,I+=J.offsetLeft;if(o.offset.doesNotAddBorder&&!(o.offset.doesAddBorderForTableAndCells&&/^t(able|d|h)$/i.test(J.tagName))){N+=parseInt(M.borderTopWidth,10)||0,I+=parseInt(M.borderLeftWidth,10)||0}F=G,G=J.offsetParent}if(o.offset.subtractsBorderForOverflowNotVisible&&M.overflow!=="visible"){N+=parseInt(M.borderTopWidth,10)||0,I+=parseInt(M.borderLeftWidth,10)||0}E=M}if(E.position==="relative"||E.position==="static"){N+=K.offsetTop,I+=K.offsetLeft}if(E.position==="fixed"){N+=Math.max(H.scrollTop,K.scrollTop),I+=Math.max(H.scrollLeft,K.scrollLeft)}return{top:N,left:I}}}o.offset={initialize:function(){if(this.initialized){return}var L=document.body,F=document.createElement("div"),H,G,N,I,M,E,J=L.style.marginTop,K='
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G=this.offsetParent(),J=this.offset(),E=/^body|html$/i.test(G[0].tagName)?{top:0,left:0}:G.offset();J.top-=j(this,"marginTop");J.left-=j(this,"marginLeft");E.top+=j(G,"borderTopWidth");E.left+=j(G,"borderLeftWidth");F={top:J.top-E.top,left:J.left-E.left}}return F},offsetParent:function(){var E=this[0].offsetParent||document.body;while(E&&(!/^body|html$/i.test(E.tagName)&&o.css(E,"position")=="static")){E=E.offsetParent}return o(E)}});o.each(["Left","Top"],function(F,E){var G="scroll"+E;o.fn[G]=function(H){if(!this[0]){return null}return H!==g?this.each(function(){this==l||this==document?l.scrollTo(!F?H:o(l).scrollLeft(),F?H:o(l).scrollTop()):this[G]=H}):this[0]==l||this[0]==document?self[F?"pageYOffset":"pageXOffset"]||o.boxModel&&document.documentElement[G]||document.body[G]:this[0][G]}});o.each(["Height","Width"],function(I,G){var E=I?"Left":"Top",H=I?"Right":"Bottom",F=G.toLowerCase();o.fn["inner"+G]=function(){return this[0]?o.css(this[0],F,false,"padding"):null};o.fn["outer"+G]=function(K){return this[0]?o.css(this[0],F,false,K?"margin":"border"):null};var J=G.toLowerCase();o.fn[J]=function(K){return this[0]==l?document.compatMode=="CSS1Compat"&&document.documentElement["client"+G]||document.body["client"+G]:this[0]==document?Math.max(document.documentElement["client"+G],document.body["scroll"+G],document.documentElement["scroll"+G],document.body["offset"+G],document.documentElement["offset"+G]):K===g?(this.length?o.css(this[0],J):null):this.css(J,typeof K==="string"?K:K+"px")}})})(); /* * jQuery UI 1.7.2 * * Copyright (c) 2009 AUTHORS.txt (http://jqueryui.com/about) * Dual licensed under the MIT (MIT-LICENSE.txt) * and GPL (GPL-LICENSE.txt) licenses. * * http://docs.jquery.com/UI */ jQuery.ui||(function(c){var i=c.fn.remove,d=c.browser.mozilla&&(parseFloat(c.browser.version)<1.9);c.ui={version:"1.7.2",plugin:{add:function(k,l,n){var m=c.ui[k].prototype;for(var j in n){m.plugins[j]=m.plugins[j]||[];m.plugins[j].push([l,n[j]])}},call:function(j,l,k){var n=j.plugins[l];if(!n||!j.element[0].parentNode){return}for(var m=0;m0){return true}m[j]=1;l=(m[j]>0);m[j]=0;return l},isOverAxis:function(k,j,l){return(k>j)&&(k<(j+l))},isOver:function(o,k,n,m,j,l){return c.ui.isOverAxis(o,n,j)&&c.ui.isOverAxis(k,m,l)},keyCode:{BACKSPACE:8,CAPS_LOCK:20,COMMA:188,CONTROL:17,DELETE:46,DOWN:40,END:35,ENTER:13,ESCAPE:27,HOME:36,INSERT:45,LEFT:37,NUMPAD_ADD:107,NUMPAD_DECIMAL:110,NUMPAD_DIVIDE:111,NUMPAD_ENTER:108,NUMPAD_MULTIPLY:106,NUMPAD_SUBTRACT:109,PAGE_DOWN:34,PAGE_UP:33,PERIOD:190,RIGHT:39,SHIFT:16,SPACE:32,TAB:9,UP:38}};if(d){var f=c.attr,e=c.fn.removeAttr,h="http://www.w3.org/2005/07/aaa",a=/^aria-/,b=/^wairole:/;c.attr=function(k,j,l){var m=l!==undefined;return(j=="role"?(m?f.call(this,k,j,"wairole:"+l):(f.apply(this,arguments)||"").replace(b,"")):(a.test(j)?(m?k.setAttributeNS(h,j.replace(a,"aaa:"),l):f.call(this,k,j.replace(a,"aaa:"))):f.apply(this,arguments)))};c.fn.removeAttr=function(j){return(a.test(j)?this.each(function(){this.removeAttributeNS(h,j.replace(a,""))}):e.call(this,j))}}c.fn.extend({remove:function(){c("*",this).add(this).each(function(){c(this).triggerHandler("remove")});return i.apply(this,arguments)},enableSelection:function(){return this.attr("unselectable","off").css("MozUserSelect","").unbind("selectstart.ui")},disableSelection:function(){return this.attr("unselectable","on").css("MozUserSelect","none").bind("selectstart.ui",function(){return false})},scrollParent:function(){var j;if((c.browser.msie&&(/(static|relative)/).test(this.css("position")))||(/absolute/).test(this.css("position"))){j=this.parents().filter(function(){return(/(relative|absolute|fixed)/).test(c.curCSS(this,"position",1))&&(/(auto|scroll)/).test(c.curCSS(this,"overflow",1)+c.curCSS(this,"overflow-y",1)+c.curCSS(this,"overflow-x",1))}).eq(0)}else{j=this.parents().filter(function(){return(/(auto|scroll)/).test(c.curCSS(this,"overflow",1)+c.curCSS(this,"overflow-y",1)+c.curCSS(this,"overflow-x",1))}).eq(0)}return(/fixed/).test(this.css("position"))||!j.length?c(document):j}});c.extend(c.expr[":"],{data:function(l,k,j){return !!c.data(l,j[3])},focusable:function(k){var l=k.nodeName.toLowerCase(),j=c.attr(k,"tabindex");return(/input|select|textarea|button|object/.test(l)?!k.disabled:"a"==l||"area"==l?k.href||!isNaN(j):!isNaN(j))&&!c(k)["area"==l?"parents":"closest"](":hidden").length},tabbable:function(k){var j=c.attr(k,"tabindex");return(isNaN(j)||j>=0)&&c(k).is(":focusable")}});function g(m,n,o,l){function k(q){var p=c[m][n][q]||[];return(typeof p=="string"?p.split(/,?\s+/):p)}var j=k("getter");if(l.length==1&&typeof l[0]=="string"){j=j.concat(k("getterSetter"))}return(c.inArray(o,j)!=-1)}c.widget=function(k,j){var l=k.split(".")[0];k=k.split(".")[1];c.fn[k]=function(p){var n=(typeof p=="string"),o=Array.prototype.slice.call(arguments,1);if(n&&p.substring(0,1)=="_"){return this}if(n&&g(l,k,p,o)){var m=c.data(this[0],k);return(m?m[p].apply(m,o):undefined)}return this.each(function(){var q=c.data(this,k);(!q&&!n&&c.data(this,k,new c[l][k](this,p))._init());(q&&n&&c.isFunction(q[p])&&q[p].apply(q,o))})};c[l]=c[l]||{};c[l][k]=function(o,n){var m=this;this.namespace=l;this.widgetName=k;this.widgetEventPrefix=c[l][k].eventPrefix||k;this.widgetBaseClass=l+"-"+k;this.options=c.extend({},c.widget.defaults,c[l][k].defaults,c.metadata&&c.metadata.get(o)[k],n);this.element=c(o).bind("setData."+k,function(q,p,r){if(q.target==o){return m._setData(p,r)}}).bind("getData."+k,function(q,p){if(q.target==o){return m._getData(p)}}).bind("remove",function(){return m.destroy()})};c[l][k].prototype=c.extend({},c.widget.prototype,j);c[l][k].getterSetter="option"};c.widget.prototype={_init:function(){},destroy:function(){this.element.removeData(this.widgetName).removeClass(this.widgetBaseClass+"-disabled "+this.namespace+"-state-disabled").removeAttr("aria-disabled")},option:function(l,m){var k=l,j=this;if(typeof l=="string"){if(m===undefined){return this._getData(l)}k={};k[l]=m}c.each(k,function(n,o){j._setData(n,o)})},_getData:function(j){return this.options[j]},_setData:function(j,k){this.options[j]=k;if(j=="disabled"){this.element[k?"addClass":"removeClass"](this.widgetBaseClass+"-disabled "+this.namespace+"-state-disabled").attr("aria-disabled",k)}},enable:function(){this._setData("disabled",false)},disable:function(){this._setData("disabled",true)},_trigger:function(l,m,n){var p=this.options[l],j=(l==this.widgetEventPrefix?l:this.widgetEventPrefix+l);m=c.Event(m);m.type=j;if(m.originalEvent){for(var k=c.event.props.length,o;k;){o=c.event.props[--k];m[o]=m.originalEvent[o]}}this.element.trigger(m,n);return !(c.isFunction(p)&&p.call(this.element[0],m,n)===false||m.isDefaultPrevented())}};c.widget.defaults={disabled:false};c.ui.mouse={_mouseInit:function(){var j=this;this.element.bind("mousedown."+this.widgetName,function(k){return j._mouseDown(k)}).bind("click."+this.widgetName,function(k){if(j._preventClickEvent){j._preventClickEvent=false;k.stopImmediatePropagation();return false}});if(c.browser.msie){this._mouseUnselectable=this.element.attr("unselectable");this.element.attr("unselectable","on")}this.started=false},_mouseDestroy:function(){this.element.unbind("."+this.widgetName);(c.browser.msie&&this.element.attr("unselectable",this._mouseUnselectable))},_mouseDown:function(l){l.originalEvent=l.originalEvent||{};if(l.originalEvent.mouseHandled){return}(this._mouseStarted&&this._mouseUp(l));this._mouseDownEvent=l;var k=this,m=(l.which==1),j=(typeof this.options.cancel=="string"?c(l.target).parents().add(l.target).filter(this.options.cancel).length:false);if(!m||j||!this._mouseCapture(l)){return true}this.mouseDelayMet=!this.options.delay;if(!this.mouseDelayMet){this._mouseDelayTimer=setTimeout(function(){k.mouseDelayMet=true},this.options.delay)}if(this._mouseDistanceMet(l)&&this._mouseDelayMet(l)){this._mouseStarted=(this._mouseStart(l)!==false);if(!this._mouseStarted){l.preventDefault();return true}}this._mouseMoveDelegate=function(n){return k._mouseMove(n)};this._mouseUpDelegate=function(n){return k._mouseUp(n)};c(document).bind("mousemove."+this.widgetName,this._mouseMoveDelegate).bind("mouseup."+this.widgetName,this._mouseUpDelegate);(c.browser.safari||l.preventDefault());l.originalEvent.mouseHandled=true;return true},_mouseMove:function(j){if(c.browser.msie&&!j.button){return this._mouseUp(j)}if(this._mouseStarted){this._mouseDrag(j);return j.preventDefault()}if(this._mouseDistanceMet(j)&&this._mouseDelayMet(j)){this._mouseStarted=(this._mouseStart(this._mouseDownEvent,j)!==false);(this._mouseStarted?this._mouseDrag(j):this._mouseUp(j))}return !this._mouseStarted},_mouseUp:function(j){c(document).unbind("mousemove."+this.widgetName,this._mouseMoveDelegate).unbind("mouseup."+this.widgetName,this._mouseUpDelegate);if(this._mouseStarted){this._mouseStarted=false;this._preventClickEvent=(j.target==this._mouseDownEvent.target);this._mouseStop(j)}return false},_mouseDistanceMet:function(j){return(Math.max(Math.abs(this._mouseDownEvent.pageX-j.pageX),Math.abs(this._mouseDownEvent.pageY-j.pageY))>=this.options.distance)},_mouseDelayMet:function(j){return this.mouseDelayMet},_mouseStart:function(j){},_mouseDrag:function(j){},_mouseStop:function(j){},_mouseCapture:function(j){return true}};c.ui.mouse.defaults={cancel:null,distance:1,delay:0}})(jQuery);;/* * jQuery UI Resizable 1.7.2 * * Copyright (c) 2009 AUTHORS.txt (http://jqueryui.com/about) * Dual licensed under the MIT (MIT-LICENSE.txt) * and GPL (GPL-LICENSE.txt) licenses. * * http://docs.jquery.com/UI/Resizables * * Depends: * ui.core.js */ (function(c){c.widget("ui.resizable",c.extend({},c.ui.mouse,{_init:function(){var e=this,j=this.options;this.element.addClass("ui-resizable");c.extend(this,{_aspectRatio:!!(j.aspectRatio),aspectRatio:j.aspectRatio,originalElement:this.element,_proportionallyResizeElements:[],_helper:j.helper||j.ghost||j.animate?j.helper||"ui-resizable-helper":null});if(this.element[0].nodeName.match(/canvas|textarea|input|select|button|img/i)){if(/relative/.test(this.element.css("position"))&&c.browser.opera){this.element.css({position:"relative",top:"auto",left:"auto"})}this.element.wrap(c('
').css({position:this.element.css("position"),width:this.element.outerWidth(),height:this.element.outerHeight(),top:this.element.css("top"),left:this.element.css("left")}));this.element=this.element.parent().data("resizable",this.element.data("resizable"));this.elementIsWrapper=true;this.element.css({marginLeft:this.originalElement.css("marginLeft"),marginTop:this.originalElement.css("marginTop"),marginRight:this.originalElement.css("marginRight"),marginBottom:this.originalElement.css("marginBottom")});this.originalElement.css({marginLeft:0,marginTop:0,marginRight:0,marginBottom:0});this.originalResizeStyle=this.originalElement.css("resize");this.originalElement.css("resize","none");this._proportionallyResizeElements.push(this.originalElement.css({position:"static",zoom:1,display:"block"}));this.originalElement.css({margin:this.originalElement.css("margin")});this._proportionallyResize()}this.handles=j.handles||(!c(".ui-resizable-handle",this.element).length?"e,s,se":{n:".ui-resizable-n",e:".ui-resizable-e",s:".ui-resizable-s",w:".ui-resizable-w",se:".ui-resizable-se",sw:".ui-resizable-sw",ne:".ui-resizable-ne",nw:".ui-resizable-nw"});if(this.handles.constructor==String){if(this.handles=="all"){this.handles="n,e,s,w,se,sw,ne,nw"}var k=this.handles.split(",");this.handles={};for(var f=0;f
');if(/sw|se|ne|nw/.test(h)){g.css({zIndex:++j.zIndex})}if("se"==h){g.addClass("ui-icon ui-icon-gripsmall-diagonal-se")}this.handles[h]=".ui-resizable-"+h;this.element.append(g)}}this._renderAxis=function(p){p=p||this.element;for(var m in this.handles){if(this.handles[m].constructor==String){this.handles[m]=c(this.handles[m],this.element).show()}if(this.elementIsWrapper&&this.originalElement[0].nodeName.match(/textarea|input|select|button/i)){var n=c(this.handles[m],this.element),o=0;o=/sw|ne|nw|se|n|s/.test(m)?n.outerHeight():n.outerWidth();var l=["padding",/ne|nw|n/.test(m)?"Top":/se|sw|s/.test(m)?"Bottom":/^e$/.test(m)?"Right":"Left"].join("");p.css(l,o);this._proportionallyResize()}if(!c(this.handles[m]).length){continue}}};this._renderAxis(this.element);this._handles=c(".ui-resizable-handle",this.element).disableSelection();this._handles.mouseover(function(){if(!e.resizing){if(this.className){var i=this.className.match(/ui-resizable-(se|sw|ne|nw|n|e|s|w)/i)}e.axis=i&&i[1]?i[1]:"se"}});if(j.autoHide){this._handles.hide();c(this.element).addClass("ui-resizable-autohide").hover(function(){c(this).removeClass("ui-resizable-autohide");e._handles.show()},function(){if(!e.resizing){c(this).addClass("ui-resizable-autohide");e._handles.hide()}})}this._mouseInit()},destroy:function(){this._mouseDestroy();var d=function(f){c(f).removeClass("ui-resizable ui-resizable-disabled ui-resizable-resizing").removeData("resizable").unbind(".resizable").find(".ui-resizable-handle").remove()};if(this.elementIsWrapper){d(this.element);var e=this.element;e.parent().append(this.originalElement.css({position:e.css("position"),width:e.outerWidth(),height:e.outerHeight(),top:e.css("top"),left:e.css("left")})).end().remove()}this.originalElement.css("resize",this.originalResizeStyle);d(this.originalElement)},_mouseCapture:function(e){var f=false;for(var d in this.handles){if(c(this.handles[d])[0]==e.target){f=true}}return this.options.disabled||!!f},_mouseStart:function(f){var i=this.options,e=this.element.position(),d=this.element;this.resizing=true;this.documentScroll={top:c(document).scrollTop(),left:c(document).scrollLeft()};if(d.is(".ui-draggable")||(/absolute/).test(d.css("position"))){d.css({position:"absolute",top:e.top,left:e.left})}if(c.browser.opera&&(/relative/).test(d.css("position"))){d.css({position:"relative",top:"auto",left:"auto"})}this._renderProxy();var j=b(this.helper.css("left")),g=b(this.helper.css("top"));if(i.containment){j+=c(i.containment).scrollLeft()||0;g+=c(i.containment).scrollTop()||0}this.offset=this.helper.offset();this.position={left:j,top:g};this.size=this._helper?{width:d.outerWidth(),height:d.outerHeight()}:{width:d.width(),height:d.height()};this.originalSize=this._helper?{width:d.outerWidth(),height:d.outerHeight()}:{width:d.width(),height:d.height()};this.originalPosition={left:j,top:g};this.sizeDiff={width:d.outerWidth()-d.width(),height:d.outerHeight()-d.height()};this.originalMousePosition={left:f.pageX,top:f.pageY};this.aspectRatio=(typeof i.aspectRatio=="number")?i.aspectRatio:((this.originalSize.width/this.originalSize.height)||1);var h=c(".ui-resizable-"+this.axis).css("cursor");c("body").css("cursor",h=="auto"?this.axis+"-resize":h);d.addClass("ui-resizable-resizing");this._propagate("start",f);return true},_mouseDrag:function(d){var 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padding: 3px 7px 2px; } table.doxtable th { background-color: #374F7F; color: #FFFFFF; font-size: 110%; padding-bottom: 4px; padding-top: 5px; text-align:left; } table.fieldtable { width: 100%; margin-bottom: 10px; border: 1px solid #A8B8D9; border-spacing: 0px; -moz-border-radius: 4px; -webkit-border-radius: 4px; border-radius: 4px; -moz-box-shadow: rgba(0, 0, 0, 0.15) 2px 2px 2px; -webkit-box-shadow: 2px 2px 2px rgba(0, 0, 0, 0.15); box-shadow: 2px 2px 2px rgba(0, 0, 0, 0.15); } .fieldtable td, .fieldtable th { padding: 3px 7px 2px; } .fieldtable td.fieldtype, .fieldtable td.fieldname { white-space: nowrap; border-right: 1px solid #A8B8D9; border-bottom: 1px solid #A8B8D9; vertical-align: top; } .fieldtable td.fielddoc { border-bottom: 1px solid #A8B8D9; width: 100%; } .fieldtable tr:last-child td { border-bottom: none; } .fieldtable th { background-image:url('nav_f.png'); background-repeat:repeat-x; background-color: #E2E8F2; font-size: 90%; color: #253555; padding-bottom: 4px; padding-top: 5px; 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} h1, h2, h3, h4, h5, h6 { page-break-after: avoid; } .summary { display: none; } .memitem { page-break-inside: avoid; } #doc-content { margin-left:0 !important; height:auto !important; width:auto !important; overflow:inherit; display:inline; } pre.fragment { overflow: visible; text-wrap: unrestricted; white-space: -moz-pre-wrap; /* Moz */ white-space: -pre-wrap; /* Opera 4-6 */ white-space: -o-pre-wrap; /* Opera 7 */ white-space: pre-wrap; /* CSS3 */ word-wrap: break-word; /* IE 5.5+ */ } } CCfits/html/index.html0000644000225700000360000003414311667506644014504 0ustar cagordonlhea CCfits: CCfits Documentation
CCfits Documentation
CCfits requires CFITSIO
Return To CCfits Home Page

Introduction

CCfits is an object oriented interface to the cfitsio library. cfitsio is a widely used library for manipulating FITS (Flexible Image Transport System) formatted files. This following documentation assumes prior knowledge of the FITS format and some knowledge of the use of the cfitsio library, which is in wide use, well developed, and available on many platforms.

For information about FITS and cfitsio, refer to:

The CCfits library provides an interface that allows the user to manipulate FITS format data through the high-level building blocks of FITS files and Header-Data Units (HDUs). The implementation is designed to hide the details of performing FITS I/O from the user, who will write calls that manipulate FITS objects by passing filenames and lists of strings that represent HDUs, keywords, image data and data columns. Unlike cfitsio, which typically requires several calls to access data (e.g. open file, move to correct header, determine column containing table data, read data) CCfits is designed to make reading data atomic. For example, it exploits internally existing optimization techniques for FITS I/O, choosing the optimal reading strategy as available [see the cfitsio manual, Chapter 13] when data are read on initialization. Data written by CCfits will also be compliant with the FITS standard by specification of class constructors representing FITS dataset elements.

CCfits necessarily works in a fundamentally different way than cfitsio. The general pattern of usage for CCfits is: create a FITS object, which either opens a disk file or creates a new disk file, create references to existing or new HDU objects within it, and manipulated the data through the references. For files with Write access the library is designed to keep the FITS object on disk in sync with the memory copy. The additional memory copy increases the resources required by a calling program in return for some flexibility in accessing the data.

About this Manual

This document lays out the specification for the CCfits library.

The hyperlinks below document the installation procedure, and the demonstration program cookbook which gives examples of usage with comments.

Release Notes for Version 2.4 Dec 2011

Fixes:

  • Compressed images may now be written with BITPIX=32. This fix was made by internally storing the image array as int types rather than longs (see backwards compatibility issues).
  • For variable-width columns, the write functions now allow all of the same type conversions as had been working with fixed-width columns.
  • The null-value versions of the primary and extension image write functions are now working.
  • The basic FITS constructor can now handle files containing multiple extensions which have the same name AND version number. (Note that this is still not a recommended file structure.)
  • BinTable's addColumn function now automatically first makes itself the current extension so that the user doesn't have to call ExtHDU::makeThisCurrent().
  • Bug fix to Table's deleteRows function. This error had been preventing the output stream operator from working on vector columns after rows had been deleted.

Backwards Compatibility Issue:

  • For images of BITPIX=32, CCfits now stores the values in a valarray of ints rather than longs. This affects the public interface in one place: the return type of the ImageExt<T>::image() function.

Release Notes For Version 2.3 Nov 2010

Enhancements to CCfits:

  • 3 previously protected functions are now made public: Keyword::keytype(), PHDU::simple(), and PHDU::extend().
  • New function: ExtHDU::isCompressed().
  • Uses less memory during the image loading operations for primary and extension HDUs.
  • When the basic version of the FITS constructor is called in Write mode on a pre-existing file, it will now automatically read ALL of the headers rather than just the primary. This makes it conform more closely to the Read mode behavior, and it makes things easier when trying to append new HDUs to files containing an unknown number of existing HDUs. (See Backwards Compatibility)

Bug Fixes:

  • In the 2 FITS class deleteExtension functions, the index numbers of all HDU objects which follow the deleted are now decremented by one. (See Backwards Compatibility)
  • Fix to the PHDU write functions which take a nullValue argument. Neither could be instantiated due to an invalid static_cast of pointers.
  • Fix needed for the FITS::copy function to allow the Columns in the newly created HDU to be modifiable.
  • The basic version of the FITS constructor, when in Write mode, was ignoring the user's readDataFlag and optional primary keys input.
  • An error in the (seldom instantiated) Image class assignment operator was preventing compilation with the nvcc compiler.
  • On 64-bit Linux only, a bad cast error is triggered when trying to read an image of type signed or unsigned long, into a valarray with the opposite signed/unsigned qualifier.
  • All of the FITS::read functions now perform a check to prevent multiple entries of the same HDU from appearing in the FITS::extension() multimap.
  • For case of Columns of type unsigned longs, the object's lower data limit value was left unitialized.

Backwards Compatibility Issues:

  • If you're calling either FITS::deleteExtension function AND you have saved references to any of the ExtHDU objects which follow the deleted object, note that those ExtHDUs will now have an index number 1 less than before. Their indices will now correctly match what's actually in the FITS file.
  • When using the basic version of the FITS constructor in Write mode on a pre-existing file, you no longer need to first call FITS::read to access any of the ExtHDUs. These are now read automatically, same as when this constructor is called in Read mode. However this change shouldn't require the removal of the FITS::read calls from your code. They will merely be redundant if left in.

Release Notes For Version 2.2 Sep 2009

Enhancements to CCfits:

  • Added an auto-generated pkg-config file to the stand-alone distribution.
  • Added an option for case-insensitive searching in the ExtHDU and Table Column get-by-name functions.
  • The public functions column() and numCols() have been added to the ExtHDU interface. They were previously available only in the derived Table class.
  • New resetRead and getNullValue functions for Column class.
  • Improved the documentation for the nullValue versions of the Column read/write member functions.

Bug Fixes:

  • Converted non-standard calls to vector and valarray end iterators. These were causing runtime exceptions when built with Microsoft Visual C++ v9.0.
  • The Column addNullValue function now works for cases where the null value argument is of a type that requires casting to match the type of data stored in the Column.
  • Fix to the Column writeArrays function for the case where valarrays of varying length were sent to fixed-width columns. It was previously sending along a default null value even when the user did not request one.
  • Fix for reading and writing complex data types to scalar columns. The first "firstRow" complex values were not being written or read.
  • Renamed private FITS::extension() function to extensionMap(). This is to prevent user from having to explicitly declare a const FITS pointer in order to use the public const FITS::extension*() function.

Backwards Compatibility Issue:

  • To prevent overloading ambiguity resulting from the new flag added to ExtHDU/Table get-by-name Column functions for case-insensitive searches, the protected column(string,Column*) function has been renamed to setColumn. As this is a protected function, the change should not affect standard usage of CCfits.

For a more complete listing, see the CHANGES file distributed with the software. For earlier versions, see Previous Release Notes.

Authors and Acknowledgements

CCfits was written as part of a re-engineering effort for the X-Ray data analysis program, XSPEC. It was designed using Rational Rose and originally implemented on a Solaris platform by Ben Dorman to whom blame should be attached. Sandhia Bansal worked on part of the implementation and, and Paul Kunz (pfkeb@slac.stanford.edu) wrote the configuration scheme and dispensed helpful advice: both are also thanked profusely for the port to Windows2000/VC++.net. Thanks to R. Mathar (MPIA) and Patrik Jonsson (Lick Obs.) for contributing many helpful suggestions and bug reports, and ports to HP-UX and AIX respectively.

CCfits is currently maintained by Craig Gordon and Bryan Irby (ccfits@heasarc.gsfc.nasa.gov). Suggestions and bug reports are welcome, as are offers to fill out parts of the implementation that are missing. We are also interested in knowing which parts of cfitsio that are not currently supported should be the highest priority for future extensions.

Generated on Tue Dec 6 2011 16:12:51 for CCfits by   doxygen 1.7.5.1
CCfits/html/pages.html0000644000225700000360000000563211667502523014465 0ustar cagordonlhea CCfits: Related Pages
Related Pages
Here is a list of all related documentation pages:
Generated on Tue Dec 6 2011 16:12:51 for CCfits by   doxygen 1.7.5.1
CCfits/html/AsciiTable_8h_source.html0000644000225700000360000002422611667502523017345 0ustar cagordonlhea CCfits: AsciiTable.h Source File
CCfits  2.4
AsciiTable.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef ASCIITABLE_H
00010 #define ASCIITABLE_H 1
00011 
00012 // HDUCreator
00013 #include "HDUCreator.h"
00014 // Table
00015 #include "Table.h"
00016 // needed for CLONE_DEFECT
00017 #ifdef _MSC_VER
00018 #include "MSconfig.h"
00019 #endif
00020 
00021 
00022 namespace CCfits {
00023 
00136   class AsciiTable : public Table  //## Inherits: <unnamed>%3804A75CE420
00137   {
00138 
00139     public:
00140         virtual AsciiTable * clone (FITSBase* p) const;
00141         virtual void readData (bool readFlag = false, const std::vector<String>& keys = std::vector<String>());
00142         virtual void addColumn (ValueType type, const String& columnName, long repeatWidth, const String& colUnit = String(""), long decimals = 0, size_t columnNumber = 0);
00143 
00144       // Additional Public Declarations
00145 
00146     protected:
00147         AsciiTable (FITSBase* p, const String &hduName = String(""), bool readFlag = false, const std::vector<String>& keys = std::vector<String>(), int version = 1);
00148         AsciiTable (FITSBase* p, const String &hduName, int rows, const std::vector<String>& columnName = std::vector<String>(), const std::vector<String>& columnFmt = std::vector<String>(), const std::vector<String>& columnUnit = std::vector<String>(), int version = 1);
00149         //      ExtHDU constructor for getting ExtHDUs by number.
00150         //      Necessary since EXTNAME is a reserved not required
00151         //      keyword.
00152         AsciiTable (FITSBase* p, int number);
00153         ~AsciiTable();
00154 
00155       // Additional Protected Declarations
00156 
00157     private:
00158         AsciiTable(const AsciiTable &right);
00159 
00160         virtual void readTableHeader (int ncols, std::vector<String>& colName, std::vector<String>& colFmt, std::vector<String>& colUnit);
00161 
00162       // Additional Private Declarations
00163 
00164     private: //## implementation
00165       // Additional Implementation Declarations
00166       friend class HDUCreator;
00167   };
00168 
00169   // Class CCfits::AsciiTable 
00170 
00171 } // namespace CCfits
00172 
00173 
00174 #endif
Generated on Tue Dec 6 2011 16:12:51 for CCfits by   doxygen 1.7.5.1
CCfits/html/BinTable_8h_source.html0000644000225700000360000002422611667502523017025 0ustar cagordonlhea CCfits: BinTable.h Source File
CCfits  2.4
BinTable.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef BINTABLE_H
00010 #define BINTABLE_H 1
00011 
00012 // HDUCreator
00013 #include "HDUCreator.h"
00014 // Table
00015 #include "Table.h"
00016 
00017 // needed for CLONE_DEFECT
00018 #ifdef _MSC_VER
00019 #include "MSconfig.h"
00020 #endif
00021 
00022 
00023 namespace CCfits {
00024 
00130   class BinTable : public Table  //## Inherits: <unnamed>%3804A7E75F10
00131   {
00132 
00133     public:
00134         virtual BinTable * clone (FITSBase* p) const;
00135         virtual void readData (bool readFlag = false, const std::vector<String>& keys = std::vector<String>());
00136         virtual void addColumn (ValueType type, const String& columnName, long repeatWidth, const String& colUnit = String(""), long decimals = 0, size_t columnNumber = 0);
00137 
00138       // Additional Public Declarations
00139 
00140     protected:
00141         BinTable (FITSBase* p, const String &hduName = String(""), bool readFlag = false, const std::vector<String>& keys = std::vector<String>(), int version = 1);
00142         BinTable (FITSBase* p, const String &hduName, int rows, const std::vector<String>& columnName = std::vector<String>(), const std::vector<String>& columnFmt = std::vector<String>(), const std::vector<String>& columnUnit = std::vector<String>(), int version = 1);
00143         //      ExtHDU constructor for getting ExtHDUs by number.
00144         //      Necessary since EXTNAME is a reserved not required
00145         //      keyword.
00146         BinTable (FITSBase* p, int number);
00147         ~BinTable();
00148 
00149       // Additional Protected Declarations
00150 
00151     private:
00152         BinTable(const BinTable &right);
00153 
00154         virtual void readTableHeader (int ncols, std::vector<String>& colName, std::vector<String>& colFmt, std::vector<String>& colUnit);
00155         void readVariableColumns (const std::vector<String> &varColumns);
00156 
00157       // Additional Private Declarations
00158 
00159     private: //## implementation
00160       // Additional Implementation Declarations
00161       friend class HDUCreator;
00162   };
00163 
00164   // Class CCfits::BinTable 
00165 
00166 } // namespace CCfits
00167 
00168 
00169 #endif
Generated on Tue Dec 6 2011 16:12:51 for CCfits by   doxygen 1.7.5.1
CCfits/html/CCfits_8h_source.html0000644000225700000360000001716711667502523016526 0ustar cagordonlhea CCfits: CCfits.h Source File
CCfits  2.4
CCfits.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef CCFITS_H
00010 #define CCFITS_H 1
00011 
00012 // fitsio
00013 #include "fitsio.h"
00014 // string
00015 #include <string>
00016 
00017 namespace CCfits {
00018   class ExtHDU;
00019 
00020 } // namespace CCfits
00021 #include <map>
00022 #include <sys/types.h>
00023 #include "longnam.h"
00024 #include "float.h"
00025 
00026 
00027 namespace CCfits {
00031   static const int BITPIX = -32;
00032   static const int  NAXIS =   2;
00033   static const int  MAXDIM = 99;
00034   extern const unsigned long USBASE;
00035   extern const unsigned long  ULBASE;
00036 
00037   extern  char BSCALE[7];
00038   extern  char BZERO[6];
00039 
00040 
00041 
00042   typedef enum {Read=READONLY,Write=READWRITE} RWmode;
00043 
00044 
00079   typedef enum {Tnull, Tbit = TBIT, Tbyte = TBYTE, Tlogical = TLOGICAL, Tstring = TSTRING, Tushort = TUSHORT, Tshort = TSHORT,Tuint = TUINT,Tint = TINT, Tulong = TULONG,Tlong = TLONG, Tlonglong = TLONGLONG, Tfloat = TFLOAT, Tdouble = TDOUBLE, Tcomplex = TCOMPLEX, Tdblcomplex=TDBLCOMPLEX, VTbit= -TBIT, VTbyte=-TBYTE,VTlogical=-Tlogical, VTushort=-TUSHORT,VTshort=-TSHORT,VTuint=-TUINT, VTint=-TINT,VTulong=-TULONG,VTlong=-TLONG,VTlonglong=-TLONGLONG,VTfloat=-TFLOAT,VTdouble=-TDOUBLE,VTcomplex=-TCOMPLEX,VTdblcomplex=-TDBLCOMPLEX} ValueType;
00080 
00081 
00082 
00083   typedef enum {AnyHdu=-1, ImageHdu, AsciiTbl, BinaryTbl} HduType;
00084 
00085 
00086 
00087   typedef enum {Inotype = 0, Ibyte=BYTE_IMG, 
00088   Ishort = SHORT_IMG,
00089   Ilong = LONG_IMG, 
00090   Ifloat = FLOAT_IMG, 
00091   Idouble = DOUBLE_IMG, 
00092   Iushort = USHORT_IMG, 
00093   Iulong = ULONG_IMG} ImageType;
00094 
00095 
00096 
00097   typedef std::string String;
00098 
00099 
00100 
00101   typedef std::multimap<String,CCfits::ExtHDU*> ExtMap;
00102 
00103 
00104 
00105   typedef ExtMap::const_iterator ExtMapConstIt;
00106 
00107 
00108 
00109   typedef ExtMap::iterator ExtMapIt;
00110 
00111 } // namespace CCfits
00112 
00113 
00114 #endif
Generated on Tue Dec 6 2011 16:12:51 for CCfits by   doxygen 1.7.5.1
CCfits/html/Column_8h_source.html0000644000225700000360000027203611667502523016606 0ustar cagordonlhea CCfits: Column.h Source File
CCfits  2.4
Column.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef COLUMN_H
00010 #define COLUMN_H 1
00011 #include <iostream>
00012 
00013 // CCfitsHeader
00014 #include "CCfits.h"
00015 // Table
00016 #include "Table.h"
00017 // FitsError
00018 #include "FitsError.h"
00019 // FITSUtil
00020 #include "FITSUtil.h"
00021 
00022 #include <complex>
00023 
00024 
00025 namespace CCfits {
00026 
00027 
00028 
00827   class Column 
00828   {
00829 
00830     public:
00831 
00832 
00833 
00834       class RangeError : public FitsException  //## Inherits: <unnamed>%3946526D031A
00835       {
00836         public:
00837             RangeError (const String& msg, bool silent = true);
00838 
00839         protected:
00840         private:
00841         private: //## implementation
00842       };
00843 
00844 
00845 
00846       class InvalidDataType : public FitsException  //## Inherits: <unnamed>%3947CF30033E
00847       {
00848         public:
00849             InvalidDataType (const String& str = string(), bool silent = true);
00850 
00851         protected:
00852         private:
00853         private: //## implementation
00854       };
00855 
00856 
00857 
00858       class InvalidRowParameter : public FitsException  //## Inherits: <unnamed>%39B5310F01A0
00859       {
00860         public:
00861             InvalidRowParameter (const String& diag, bool silent = true);
00862 
00863         protected:
00864         private:
00865         private: //## implementation
00866       };
00867 
00868 
00869 
00870       class WrongColumnType : public FitsException  //## Inherits: <unnamed>%39B545780082
00871       {
00872         public:
00873             WrongColumnType (const String& diag, bool silent = true);
00874 
00875         protected:
00876         private:
00877         private: //## implementation
00878       };
00879 
00880 
00881 
00882       class UnspecifiedLengths : public FitsException  //## Inherits: <unnamed>%3A018C9D007D
00883       {
00884         public:
00885             UnspecifiedLengths (const String& diag, bool silent = true);
00886 
00887         protected:
00888         private:
00889         private: //## implementation
00890       };
00891 
00892 
00893 
00894       class InvalidRowNumber : public FitsException  //## Inherits: <unnamed>%3B0A850F0307
00895       {
00896         public:
00897             InvalidRowNumber (const String& diag, bool silent = true);
00898 
00899         protected:
00900         private:
00901         private: //## implementation
00902       };
00903 
00904 
00905 
00906       class InsufficientElements : public FitsException  //## Inherits: <unnamed>%3B0BE611010A
00907       {
00908         public:
00909             InsufficientElements (const String& msg, bool silent = true);
00910 
00911         protected:
00912         private:
00913         private: //## implementation
00914       };
00915 
00916 
00917 
00918       class NoNullValue : public FitsException  //## Inherits: <unnamed>%3B0D589A0092
00919       {
00920         public:
00921             NoNullValue (const String& diag, bool silent = true);
00922 
00923         protected:
00924         private:
00925         private: //## implementation
00926       };
00927 
00928 
00929 
00930       class InvalidNumberOfRows : public FitsException  //## Inherits: <unnamed>%3B20EB8B0205
00931       {
00932         public:
00933             InvalidNumberOfRows (size_t number, bool silent = true);
00934 
00935         protected:
00936         private:
00937         private: //## implementation
00938       };
00939         Column(const Column &right);
00940         virtual ~Column();
00941         bool operator==(const Column &right) const;
00942 
00943         bool operator!=(const Column &right) const;
00944 
00945         virtual void readData (long firstRow, long nelements, long firstElem = 1) = 0;
00946         //      Virtual copy constructor.
00947         virtual Column * clone () const = 0;
00948         int rows () const;
00949         void setDisplay ();
00950         virtual void setDimen ();
00951         friend std::ostream& operator << (std::ostream& s, const Column& right);
00952         Table* parent () const;
00953         //      Inequality operators for imposing sort order on columns.
00954         friend bool operator < (const Column& left, const Column& right);
00955         //      Inequality operators for imposing sort order on columns.
00956         friend bool operator > (const Column& left, const Column& right);
00957         void setLimits (ValueType type);
00958         void unit (const String& value);
00959         void resetRead ();
00960         int index () const;
00961         void index (int value);
00962         bool isRead () const;
00963         void isRead (bool value);
00964         long width () const;
00965         void width (long value);
00966         size_t repeat () const;
00967         bool varLength () const;
00968         double scale () const;
00969         void scale (double value);
00970         double zero () const;
00971         void zero (double value);
00972         const String& display () const;
00973         const String& dimen () const;
00974         void dimen (const String& value);
00975         ValueType type () const;
00976         void type (ValueType value);
00977         static const String& TFORM ();
00978         static const String& TDISP ();
00979         static const String& TSCAL ();
00980         static const String& TZERO ();
00981         static const String& TDIM ();
00982         const String& format () const;
00983         const String& unit () const;
00984         const String& name () const;
00985 
00986     public:
00987       // Additional Public Declarations
00988 
00989         // scalar column interface. Column's Data Member is a std::vector<T>,
00990         // input data is std::vector<S>, std::valarray<S> or S* where S is not
00991         // in general the same as T.
00992 
00993         template <typename S>                   
00994         void write (const std::vector<S>& indata, long firstRow);
00995 
00996         void write (const std::vector<std::complex<float> >& indata, long firstRow);
00997 
00998         void write (const std::vector<std::complex<double> >& indata, long firstRow);
00999 
01000         template <typename S>                   
01001         void write (const std::valarray<S>& indata, long firstRow);
01002 
01003         void write (const std::valarray<std::complex<float> >& indata, long firstRow);
01004 
01005         void write (const std::valarray<std::complex<double> >& indata, long firstRow);
01006 
01007         template <typename S>                   
01008         void write (S* indata, long nRows, long firstRow);
01009 
01010 
01011         template <typename S>                   
01012         void write (const std::vector<S>& indata, long firstRow, S* nullValue);
01013 
01014         template <typename S>                   
01015         void write (const std::valarray<S>& indata, long firstRow, S* nullValue);
01016 
01017         template <typename S>                   
01018         void write (S* indata, long nRows, long firstRow, S* nullValue);        
01019         // vector column interface. We provide an interface that allows input of a vector, valarray and C-array.
01020         // there are versions that write variable numbers of elements per row as specified
01021         // in the vectorLengths argument. The user also can directly write a vector<valarray<T> >
01022         // object which is how the data are stored in the ColumnVectorData object. 
01023         // this last one is also used internally to implement the variable lengths versions.
01024 
01025         // fixed length write to binary table from valarray.
01026 
01027 
01028         template <typename S>
01029         void write (const std::valarray<S>& indata, long nRows, long firstRow);
01030 
01031         void write (const std::valarray<std::complex<float> >& indata, long nRows, long firstRow);
01032 
01033         void write (const std::valarray<std::complex<double> >& indata, long nRows, long firstRow);
01034 
01035 
01036         template <typename S>
01037         void write (const std::vector<S>& indata, long nRows, long firstRow);
01038 
01039         void write (const std::vector<std::complex<float> >& indata, long nRows, long firstRow);
01040 
01041         void write (const std::vector<std::complex<double> >& indata, long nRows, long firstRow);
01042 
01043 
01044 
01045         template <typename S>
01046         void write (S* indata, long nElements, long nRows, long firstRow);
01047 
01048 
01049         template <typename S>
01050         void write (const std::valarray<S>& indata, long nRows, long firstRow, S* nullValue);
01051 
01052 
01053         template <typename S>
01054         void write (const std::vector<S>& indata, long nRows, long firstRow, S* nullValue);
01055 
01056         template <typename S>
01057         void write (S* indata, long nElements, long nRows, long firstRow, S* nullValue);
01058 
01059         // variable-length write to vector column from valarray or vector.
01060 
01061         template <typename S>
01062         void write (const std::valarray<S>& indata,  
01063                         const std::vector<long>& vectorLengths, 
01064                         long firstRow);        
01065 
01066         void write (const std::valarray<std::complex<float> >& indata,  
01067                         const std::vector<long>& vectorLengths, 
01068                         long firstRow);        
01069 
01070         void write (const std::valarray<std::complex<double> >& indata,  
01071                         const std::vector<long>& vectorLengths, 
01072                         long firstRow);      
01073 
01074         template <typename S>
01075         void write (const std::vector<S>& indata, 
01076                         const std::vector<long>& vectorLengths, 
01077                         long firstRow);
01078 
01079 
01080 
01081         void write (const std::vector<std::complex<float> >& indata, 
01082                         const std::vector<long>& vectorLengths, 
01083                         long firstRow);
01084 
01085         void write (const std::vector<std::complex<double> >& indata, 
01086                         const std::vector<long>& vectorLengths, 
01087                         long firstRow);
01088 
01089         template <typename S>
01090         void write (S* indata, long nElements,  
01091                         const std::vector<long>& vectorLengths, 
01092                         long firstRow);
01093 
01094         template <typename S>
01095         void writeArrays (const std::vector<std::valarray<S> >& indata, long firstRow); 
01096 
01097         void writeArrays (const std::vector<std::valarray<std::complex<float> > >& indata, long firstRow); 
01098 
01099         void writeArrays (const std::vector<std::valarray<std::complex<double> > >& indata, long firstRow); 
01100 
01101         template <typename S>
01102         void writeArrays (const std::vector<std::valarray<S> >& indata, long firstRow, S* nullValue);  
01103 
01104         // get specified elements of a scalar column, returned as a std::vector
01105         // S is NOT the type of the column data itself, it is the type of the returned
01106         // data.
01107 
01108         template <typename S>
01109         void read(std::vector<S>& vals, long first, long last) ;
01110 
01111         // VC++, at least, won't compile these as template covering std::complex instances.
01112         void read(std::vector< std::complex<float> >& , long first, long last);
01113 
01114         void read(std::vector< std::complex<double> >& , long first, long last);
01115 
01116         void read(std::vector<String>& vals, long first, long last);
01117 
01118         // return a set of rows from a scalar column as a valarray.
01119         template <typename S>
01120         void read(std::valarray<S>& vals, long first, long last) ;
01121 
01122         void read(std::valarray<std::complex<float> >& vals, long first, long last) ;
01123 
01124         void read(std::valarray<std::complex<double> >& vals, long first, long last) ;
01125 
01126         // return a single  row of a vector column.
01127         template <typename S>
01128         void read(std::valarray<S>& vals, long rows) ;
01129 
01130         void read(std::valarray<std::complex<float> >& vals, long rows) ;
01131 
01132         void read(std::valarray<std::complex<double> >& vals, long rows) ;
01133 
01134         // get a set of rows from a vector column.
01135         template <typename S>
01136         void readArrays(std::vector<std::valarray<S> >& vals, long first, long last) ;
01137 
01138         void readArrays(std::vector<std::valarray<std::complex<float> > >& vals, long first, long last) ;
01139 
01140         void readArrays(std::vector<std::valarray<std::complex<double> > >& vals, long first, long last) ;
01141 
01142         // nullValue has no meaning when the target column has floating point/std::complex
01143         // type. Also, implict conversion of std::complex to pure real is not supported
01144         // by cfitsio.
01145 
01146         template <typename S>
01147         void read(std::vector<S>& vals, long first, long last, S* nullValue) ;
01148 
01149         // return a set of rows from a scalar column as a valarray.
01150         template <typename S>
01151         void read(std::valarray<S>& vals, long first, long last, S* nullValue);
01152 
01153         // return a single  row of a vector column.
01154         template <typename S>
01155         void read(std::valarray<S>& vals, long rows, S* nullValue) ;
01156 
01157         // get a set of rows from a vector column.
01158         template <typename S>
01159         void readArrays(std::vector<std::valarray<S> >& vals, long first, long last, S* nullValue);
01160 
01161         // add a null value to the column 
01162         template <typename T>
01163         void addNullValue(T nullVal);
01164 
01165         // get the TNULL setting
01166         template <typename T>
01167         bool getNullValue(T* nullVal) const;
01168 
01169         void write (const std::vector<String>& indata, long firstRow);
01170 
01171         friend void Table::insertRows(long first, long number);
01172 
01173         friend void Table::deleteRows(long first, long number);
01174 
01175         friend void Table::deleteRows(const std::vector<long>& rowList);
01176 
01177         friend void Table::initRead();
01178 
01179         friend void Table::reindex();
01180 
01181         friend void Table::copyData(const Table& right);
01182     protected:
01183         Column (int columnIndex,        // The column index, i.e. the integer n in the keyword TCOLn
01184         const String &columnName,       // The column name, curiously TTYPEn
01185         ValueType type, const String &format,   // The TFORMn keyword.
01186         const String &unit,     // The TUNITn keyword
01187         Table* p,       // ! The Table containing the Column object
01188         int rpt = 1, long w = 1, const String &comment = "");
01189         Column (Table* p = 0);
01190 
01191         virtual bool compare (const Column &right) const;
01192         fitsfile* fitsPointer ();
01193         //      Protected method to set the current HDU to be the one containing this Column object. For use in
01194         //      public read/write methods to ensure that data regarding numbers of rows and width relate to the
01195         //      right HDU
01196         void makeHDUCurrent ();
01197         virtual std::ostream& put (std::ostream& s) const;
01198         void varLength (bool value);
01199         static const String& TBCOL ();
01200         static const String& TTYPE ();
01201         static const String& TUNIT ();
01202         static const String& TNULL ();
01203         static const String& TLMIN ();
01204         static const String& TLMAX ();
01205         static const String& TDMAX ();
01206         static const String& TDMIN ();
01207         static const std::vector<String>& columnKeys ();
01208         const String& comment () const;
01209 
01210       // Additional Protected Declarations
01211 
01212     private:
01213         Column & operator=(const Column &right);
01214 
01215         //      Insert one or more blank rows into a FITS column.
01216         virtual void insertRows (long first, long number = 1) = 0;
01217         virtual void deleteRows (long first, long number = 1) = 0;
01218         static void loadColumnKeys ();
01219         void name (const String& value);
01220         void format (const String& value);
01221         long numberOfElements (long& first, long& last);
01222 
01223       // Data Members for Class Attributes
01224         static const String s_TBCOL;
01225         static const String s_TTYPE;
01226         static const String s_TFORM;
01227         static const String s_TDISP;
01228         static const String s_TUNIT;
01229         static const String s_TSCAL;
01230         static const String s_TZERO;
01231         static const String s_TDIM;
01232         static const String s_TNULL;
01233         static const String s_TLMIN;
01234         static const String s_TLMAX;
01235         static const String s_TDMAX;
01236         static const String s_TDMIN;
01237 
01238       // Additional Private Declarations
01239 
01240     private: //## implementation
01241       // Data Members for Class Attributes
01242         int m_index;
01243         bool m_isRead;
01244         long m_width;
01245         size_t m_repeat;
01246         bool m_varLength;
01247         double m_scale;
01248         double m_zero;
01249         String m_display;
01250         String m_dimen;
01251         ValueType m_type;
01252         static const short LLIMITSHORT;
01253         static const long LLIMITLONG;
01254         static const unsigned short LLIMITUSHORT;
01255         static const unsigned long LLIMITULONG;
01256         static const unsigned char LLIMITUCHAR;
01257         static const float LLIMITFLOAT;
01258         static const double LLIMITDOUBLE;
01259         static const short ULIMITSHORT;
01260         static const long ULIMITLONG;
01261         static const unsigned short ULIMITUSHORT;
01262         static const unsigned long ULIMITULONG;
01263         static const unsigned char ULIMITUCHAR;
01264         static const float ULIMITFLOAT;
01265         static const double ULIMITDOUBLE;
01266         static const int LLIMITINT;
01267         static const int ULIMITINT;
01268         static const unsigned int LLIMITUINT;
01269         static const unsigned int ULIMITUINT;
01270         static const LONGLONG LLIMITLONGLONG;
01271         static const LONGLONG ULIMITLONGLONG;
01272 
01273       // Data Members for Associations
01274         Table* m_parent;
01275         static std::vector<String> s_columnKeys;
01276         String m_comment;
01277         String m_format;
01278         String m_unit;
01279         String m_name;
01280 
01281       // Additional Implementation Declarations
01282 
01283   };
01284 
01285   // Class CCfits::Column::RangeError 
01286 
01287   // Class CCfits::Column::InvalidDataType 
01288 
01289   // Class CCfits::Column::InvalidRowParameter 
01290 
01291   // Class CCfits::Column::WrongColumnType 
01292 
01293   // Class CCfits::Column::UnspecifiedLengths 
01294 
01295   // Class CCfits::Column::InvalidRowNumber 
01296 
01297   // Class CCfits::Column::InsufficientElements 
01298 
01299   // Class CCfits::Column::NoNullValue 
01300 
01301   // Class CCfits::Column::InvalidNumberOfRows 
01302 
01303   // Class CCfits::Column 
01304 
01305   inline void Column::setDimen ()
01306   {
01307   // default implementation: do nothing. Overridden by ColumnVectorData.
01308   }
01309 
01310   inline std::ostream& operator << (std::ostream& s, const Column& right)
01311   {
01312 
01313     return right.put(s);
01314   }
01315 
01316   inline bool operator < (const Column& left, const Column& right)
01317   {
01318 
01319     return left.m_index < right.m_index;
01320   }
01321 
01322   inline bool operator > (const Column& left, const Column& right)
01323   {
01324 
01325     return left.m_index > right.m_index;
01326   }
01327 
01328   inline void Column::resetRead ()
01329   {
01330      m_isRead = false;
01331   }
01332 
01333   inline int Column::index () const
01334   {
01335     return m_index;
01336   }
01337 
01338   inline void Column::index (int value)
01339   {
01340     m_index = value;
01341   }
01342 
01343   inline bool Column::isRead () const
01344   {
01345     return m_isRead;
01346   }
01347 
01348   inline void Column::isRead (bool value)
01349   {
01350     m_isRead = value;
01351   }
01352 
01353   inline long Column::width () const
01354   {
01355     return m_width;
01356   }
01357 
01358   inline void Column::width (long value)
01359   {
01360     m_width = value;
01361   }
01362 
01363   inline size_t Column::repeat () const
01364   {
01365     return m_repeat;
01366   }
01367 
01368   inline bool Column::varLength () const
01369   {
01370     return m_varLength;
01371   }
01372 
01373   inline double Column::scale () const
01374   {
01375     return m_scale;
01376   }
01377 
01378   inline void Column::scale (double value)
01379   {
01380     m_scale = value;
01381     int status(0);
01382     if (fits_set_tscale(fitsPointer(),m_index,value,m_zero,&status)) throw FitsError(status);
01383   }
01384 
01385   inline double Column::zero () const
01386   {
01387     return m_zero;
01388   }
01389 
01390   inline void Column::zero (double value)
01391   {
01392     m_zero = value;
01393   }
01394 
01395   inline const String& Column::display () const
01396   {
01397     return m_display;
01398   }
01399 
01400   inline const String& Column::dimen () const
01401   {
01402     return m_dimen;
01403   }
01404 
01405   inline void Column::dimen (const String& value)
01406   {
01407     m_dimen = value;
01408   }
01409 
01410   inline ValueType Column::type () const
01411   {
01412     return m_type;
01413   }
01414 
01415   inline void Column::type (ValueType value)
01416   {
01417     m_type = value;
01418   }
01419 
01420   inline const String& Column::TBCOL ()
01421   {
01422     return s_TBCOL;
01423   }
01424 
01425   inline const String& Column::TTYPE ()
01426   {
01427     return s_TTYPE;
01428   }
01429 
01430   inline const String& Column::TFORM ()
01431   {
01432     return s_TFORM;
01433   }
01434 
01435   inline const String& Column::TDISP ()
01436   {
01437     return s_TDISP;
01438   }
01439 
01440   inline const String& Column::TUNIT ()
01441   {
01442     return s_TUNIT;
01443   }
01444 
01445   inline const String& Column::TSCAL ()
01446   {
01447     return s_TSCAL;
01448   }
01449 
01450   inline const String& Column::TZERO ()
01451   {
01452     return s_TZERO;
01453   }
01454 
01455   inline const String& Column::TDIM ()
01456   {
01457     return s_TDIM;
01458   }
01459 
01460   inline const String& Column::TNULL ()
01461   {
01462     return s_TNULL;
01463   }
01464 
01465   inline const String& Column::TLMIN ()
01466   {
01467     return s_TLMIN;
01468   }
01469 
01470   inline const String& Column::TLMAX ()
01471   {
01472     return s_TLMAX;
01473   }
01474 
01475   inline const String& Column::TDMAX ()
01476   {
01477     return s_TDMAX;
01478   }
01479 
01480   inline const String& Column::TDMIN ()
01481   {
01482     return s_TDMIN;
01483   }
01484 
01485   inline const std::vector<String>& Column::columnKeys ()
01486   {
01487     return s_columnKeys;
01488   }
01489 
01490   inline const String& Column::comment () const
01491   {
01492     return m_comment;
01493   }
01494 
01495   inline const String& Column::format () const
01496   {
01497     return m_format;
01498   }
01499 
01500   inline const String& Column::unit () const
01501   {
01502     return m_unit;
01503   }
01504 
01505   inline const String& Column::name () const
01506   {
01507     return m_name;
01508   }
01509 
01510 } // namespace CCfits
01511 
01512 
01513 #endif
Generated on Tue Dec 6 2011 16:12:51 for CCfits by   doxygen 1.7.5.1
CCfits/html/ColumnCreator_8h_source.html0000644000225700000360000002336511667502523020125 0ustar cagordonlhea CCfits: ColumnCreator.h Source File
CCfits  2.4
ColumnCreator.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef COLUMNCREATOR_H
00010 #define COLUMNCREATOR_H 1
00011 #include <iostream>
00012 
00013 // ColumnVectorData
00014 #include "ColumnVectorData.h"
00015 // ColumnData
00016 #include "ColumnData.h"
00017 
00018 namespace CCfits {
00019   class Table;
00020   class Column;
00021 
00022 } // namespace CCfits
00023 #include <string>
00024 #include <vector>
00025 
00026 
00027 namespace CCfits {
00028 
00029 
00030 
00031   class ColumnCreator 
00032   {
00033 
00034     public:
00035         ColumnCreator (Table* p);
00036         virtual ~ColumnCreator();
00037 
00038         void reset ();
00039         //      getColumn is a calling function for MakeColumn, i.e.
00040         //      it specifies a column in an existing file to be  "got"
00041         Column * getColumn (int number, const String& name, const String& format, const String& unit = "");
00042         //      createColumn is for specifying input data for creating
00043         //      new columns in tables.
00044         Column * createColumn (int number, ValueType type, const String &name, const String &format, const String &unit, long repeat = 1, long width = 1, double scaleFactor = 1., double offset = 0, const String &comment = "");
00045 
00046       // Additional Public Declarations
00047 
00048     protected:
00049         //      MakeColumn is a virtual function that makes a Column
00050         //      object with appropriate data member from an existing
00051         //      column in a file.
00052         virtual Column * MakeColumn (const int index, const String &name, const String &format, const String &unit, const long repeat, const long width, const String &comment = "", const int decimals = 0);
00053 
00054       // Additional Protected Declarations
00055 
00056     private:
00057         void getScaling (int index, int& type, long& repeat, long& width, double& tscale, double& tzero);
00058         const Table* parent () const;
00059         void parent (Table* value);
00060 
00061       // Additional Private Declarations
00062 
00063     private: //## implementation
00064       // Data Members for Class Attributes
00065         Column *m_column;
00066         Table* m_parent;
00067 
00068       // Additional Implementation Declarations
00069 
00070   };
00071 
00072   // Class CCfits::ColumnCreator 
00073 
00074   inline void ColumnCreator::reset ()
00075   {
00076     m_column = 0;
00077   }
00078 
00079   inline const Table* ColumnCreator::parent () const
00080   {
00081     return m_parent;
00082   }
00083 
00084   inline void ColumnCreator::parent (Table* value)
00085   {
00086     m_parent = value;
00087   }
00088 
00089 } // namespace CCfits
00090 
00091 
00092 #endif
Generated on Tue Dec 6 2011 16:12:51 for CCfits by   doxygen 1.7.5.1
CCfits/html/ColumnData_8h_source.html0000644000225700000360000016553511667502523017405 0ustar cagordonlhea CCfits: ColumnData.h Source File
CCfits  2.4
ColumnData.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef COLUMNDATA_H
00010 #define COLUMNDATA_H 1
00011 #include "CCfits.h"
00012 
00013 // vector
00014 #include <vector>
00015 // Column
00016 #include "Column.h"
00017 #ifdef _MSC_VER
00018 #include "MSconfig.h"
00019 #endif
00020 
00021 #include <complex>
00022 #include <memory>
00023 #include <iterator>
00024 #include "FITSUtil.h"
00025 using std::complex;
00026 #include "FITS.h"
00027 
00028 
00029 namespace CCfits {
00030 
00031 
00032 
00033   template <typename T>
00034   class ColumnData : public Column  //## Inherits: <unnamed>%385E51565EE8
00035   {
00036 
00037     public:
00038         ColumnData(const ColumnData< T > &right);
00039         ColumnData (Table* p = 0);
00040         ColumnData (int columnIndex, const string &columnName, ValueType type, const String &format, const String &unit, Table* p, int rpt = 1, long w = 1, const String &comment = "");
00041         ~ColumnData();
00042 
00043         virtual ColumnData<T>* clone () const;
00044         virtual void readData (long firstRow, long nelements, long firstElem = 1);
00045         void setDataLimits (T* limits);
00046         const T minLegalValue () const;
00047         void minLegalValue (T value);
00048         const T maxLegalValue () const;
00049         void maxLegalValue (T value);
00050         const T minDataValue () const;
00051         void minDataValue (T value);
00052         const T maxDataValue () const;
00053         void maxDataValue (T value);
00054         const std::vector<T>& data () const;
00055         void setData (const std::vector<T>& value);
00056         T data (int i);
00057         void data (int i, T value);
00058 
00059       // Additional Public Declarations
00060         friend class Column;
00061     protected:
00062       // Additional Protected Declarations
00063 
00064     private:
00065         ColumnData< T > & operator=(const ColumnData< T > &right);
00066 
00067         void readColumnData (long firstRow, long nelements, T* nullValue = 0);
00068         virtual bool compare (const Column &right) const;
00069         virtual std::ostream& put (std::ostream& s) const;
00070         void writeData (T* indata, long nRows = 1, long firstRow = 1, T* nullValue = 0);
00071         void writeData (const std::vector<T>& indata, long firstRow = 1, T* nullValue = 0);
00072         //      Insert one or more blank rows into a FITS column.
00073         virtual void insertRows (long first, long number = 1);
00074         virtual void deleteRows (long first, long number = 1);
00075 
00076       // Additional Private Declarations
00077 
00078     private: //## implementation
00079       // Data Members for Class Attributes
00080         T m_minLegalValue;
00081         T m_maxLegalValue;
00082         T m_minDataValue;
00083         T m_maxDataValue;
00084 
00085       // Data Members for Associations
00086         std::vector<T> m_data;
00087 
00088       // Additional Implementation Declarations
00089 
00090   };
00091 
00092   // Parameterized Class CCfits::ColumnData 
00093 
00094   template <typename T>
00095   inline void ColumnData<T>::readData (long firstRow, long nelements, long firstElem)
00096   {
00097    readColumnData(firstRow,nelements,static_cast<T*>(0));
00098   }
00099 
00100   template <typename T>
00101   inline const T ColumnData<T>::minLegalValue () const
00102   {
00103     return m_minLegalValue;
00104   }
00105 
00106   template <typename T>
00107   inline void ColumnData<T>::minLegalValue (T value)
00108   {
00109     m_minLegalValue = value;
00110   }
00111 
00112   template <typename T>
00113   inline const T ColumnData<T>::maxLegalValue () const
00114   {
00115     return m_maxLegalValue;
00116   }
00117 
00118   template <typename T>
00119   inline void ColumnData<T>::maxLegalValue (T value)
00120   {
00121     m_maxLegalValue = value;
00122   }
00123 
00124   template <typename T>
00125   inline const T ColumnData<T>::minDataValue () const
00126   {
00127     return m_minDataValue;
00128   }
00129 
00130   template <typename T>
00131   inline void ColumnData<T>::minDataValue (T value)
00132   {
00133     m_minDataValue = value;
00134   }
00135 
00136   template <typename T>
00137   inline const T ColumnData<T>::maxDataValue () const
00138   {
00139     return m_maxDataValue;
00140   }
00141 
00142   template <typename T>
00143   inline void ColumnData<T>::maxDataValue (T value)
00144   {
00145     m_maxDataValue = value;
00146   }
00147 
00148   template <typename T>
00149   inline const std::vector<T>& ColumnData<T>::data () const
00150   {
00151     return m_data;
00152   }
00153 
00154   template <typename T>
00155   inline void ColumnData<T>::setData (const std::vector<T>& value)
00156   {
00157     m_data = value;
00158   }
00159 
00160   template <typename T>
00161   inline T ColumnData<T>::data (int i)
00162   {
00163     // return data stored in the ith row, which is in the i-1 th location in the array.
00164     return m_data[i - 1];
00165   }
00166 
00167   template <typename T>
00168   inline void ColumnData<T>::data (int i, T value)
00169   {
00170     // assign data to i-1 th location in the array, representing the ith row.
00171     m_data[i - 1] = value;
00172   }
00173 
00174   // Parameterized Class CCfits::ColumnData 
00175 
00176   template <typename T>
00177   ColumnData<T>::ColumnData(const ColumnData<T> &right)
00178       :Column(right),
00179        m_minLegalValue(right.m_minLegalValue),
00180        m_maxLegalValue(right.m_maxLegalValue),
00181        m_minDataValue(right.m_minDataValue),
00182        m_maxDataValue(right.m_maxDataValue),
00183        m_data(right.m_data)
00184   {
00185   }
00186 
00187   template <typename T>
00188   ColumnData<T>::ColumnData (Table* p)
00189   : Column(p),
00190        m_minLegalValue(),
00191        m_maxLegalValue(),
00192        m_minDataValue(),
00193        m_maxDataValue(), 
00194        m_data()
00195   {
00196   }
00197 
00198   template <typename T>
00199   ColumnData<T>::ColumnData (int columnIndex, const string &columnName, ValueType type, const String &format, const String &unit, Table* p, int rpt, long w, const String &comment)
00200         : Column(columnIndex,columnName,type,format,unit,p,rpt,w,comment), 
00201         m_minLegalValue(),
00202         m_maxLegalValue(),
00203         m_minDataValue(),
00204         m_maxDataValue(),
00205         m_data()
00206   {
00207   }
00208 
00209 
00210   template <typename T>
00211   ColumnData<T>::~ColumnData()
00212   {
00213   }
00214 
00215 
00216   template <typename T>
00217   void ColumnData<T>::readColumnData (long firstRow, long nelements, T* nullValue)
00218   {
00219   if ( rows() < nelements ) 
00220   {
00221         std::cerr << "CCfits: More data requested than contained in table. ";
00222         std::cerr << "Extracting complete column.\n";
00223         nelements = rows();
00224    }   
00225 
00226    int   status(0);
00227    int   anynul(0);
00228 
00229    FITSUtil::auto_array_ptr<T> array(new T[nelements]); 
00230 
00231    makeHDUCurrent();
00232 
00233    if ( fits_read_col(fitsPointer(),type(),  index(), firstRow, 1, 
00234         nelements, nullValue, array.get(), &anynul, &status) ) throw FitsError(status);
00235 
00236 
00237    if (m_data.size() != static_cast<size_t>( rows() ) ) m_data.resize(rows());
00238 
00239    std::copy(&array[0],&array[nelements],m_data.begin()+firstRow-1);
00240    if (nelements == rows()) isRead(true); 
00241   }
00242 
00243   template <typename T>
00244   bool ColumnData<T>::compare (const Column &right) const
00245   {
00246   if ( !Column::compare(right) ) return false;
00247   const ColumnData<T>& that = static_cast<const ColumnData<T>&>(right);
00248   unsigned int n = m_data.size();
00249   if ( that.m_data.size() != n ) return false;
00250   for (unsigned int i = 0; i < n ; i++)
00251   {
00252         if (m_data[i] != that.m_data[i]) return false;   
00253   }
00254   return true;
00255   }
00256 
00257   template <typename T>
00258   ColumnData<T>* ColumnData<T>::clone () const
00259   {
00260         return new ColumnData<T>(*this);
00261   }
00262 
00263   template <typename T>
00264   std::ostream& ColumnData<T>::put (std::ostream& s) const
00265   {
00266   Column::put(s);
00267   if (FITS::verboseMode() && type() != Tstring)
00268   {
00269         s << " Column Legal limits: ( " << m_minLegalValue << "," << m_maxLegalValue << " )\n" 
00270         << " Column Data  limits: ( " << m_minDataValue << "," << m_maxDataValue << " )\n";
00271   }
00272   if (!m_data.empty())
00273   {
00274         std::ostream_iterator<T> output(s,"\n");
00275         // output each row on a separate line.
00276         // user can supply manipulators to stream for formatting.
00277         std::copy(m_data.begin(),m_data.end(),output);
00278   }
00279 
00280     return s;
00281   }
00282 
00283   template <typename T>
00284   void ColumnData<T>::writeData (T* indata, long nRows, long firstRow, T* nullValue)
00285   {
00286 
00287           // set columnData's data member to equal what's written to file.
00288           // indata has size nRows: elements firstRow to firstRow + nRows - 1 will be written.
00289           // if this exceeds the current rowlength of the HDU, update the return value for
00290           // rows() in the parent after the fitsio call.
00291           int status(0);
00292           long elementsToWrite(nRows + firstRow -1);
00293           // get a copy for restorative action.   
00294           std::vector<T> __tmp(m_data);
00295 
00296 
00297           if (elementsToWrite != static_cast<long>(m_data.size())) 
00298           {
00299 
00300                   m_data.resize(elementsToWrite,T());
00301           }
00302 
00303           std::copy(&indata[0],&indata[nRows],m_data.begin()+firstRow-1);
00304 
00305           // if successful, write to disk.
00306 
00307           try
00308           {
00309              if (nullValue)
00310              {
00311                 if (fits_write_colnull(fitsPointer(), type(), index(), firstRow, 1, nRows,
00312                                   indata, nullValue, &status) != 0) throw FitsError(status);
00313              }
00314              else
00315              {
00316                 if (fits_write_col(fitsPointer(), type(), index(), firstRow, 1, nRows,
00317                                   indata, &status) != 0) throw FitsError(status);
00318              }
00319 
00320                 // tell the Table that the number of rows has changed
00321                 parent()->updateRows();
00322           }
00323           catch (FitsError) // the only thing that can throw here.
00324           {
00325                   // reset to original content and rethrow the exception.
00326                   m_data = __tmp;
00327                   if (status == NO_NULL) throw NoNullValue(name());
00328                   else throw;
00329           }      
00330   }
00331 
00332   template <typename T>
00333   void ColumnData<T>::writeData (const std::vector<T>& indata, long firstRow, T* nullValue)
00334   {
00335         FITSUtil::CVarray<T> convert;
00336         FITSUtil::auto_array_ptr<T> pcolData (convert(indata));
00337         T* columnData  = pcolData.get();
00338         writeData(columnData,indata.size(),firstRow,nullValue);
00339   }
00340 
00341   template <typename T>
00342   void ColumnData<T>::insertRows (long first, long number)
00343   {
00344     FITSUtil::FitsNullValue<T> blank;
00345     typename std::vector<T>::iterator in;
00346     if (first !=0) 
00347     {
00348             in = m_data.begin()+first;
00349     }
00350     else
00351     {
00352             in = m_data.begin();
00353     }           
00354 
00355     // non-throwing operations.
00356     m_data.insert(in,number,blank());
00357   }
00358 
00359   template <typename T>
00360   void ColumnData<T>::deleteRows (long first, long number)
00361   {
00362     m_data.erase(m_data.begin()+first-1,m_data.begin()+first-1+number);
00363   }
00364 
00365   template <typename T>
00366   void ColumnData<T>::setDataLimits (T* limits)
00367   {
00368     m_minLegalValue = limits[0];
00369     m_maxLegalValue = limits[1];
00370     m_minDataValue = std::max(limits[2],limits[0]);
00371     m_maxDataValue = std::min(limits[3],limits[1]);
00372   }
00373 
00374   // Additional Declarations
00375 
00376   // all functions that operate on strings or complex data that call cfitsio 
00377   // need to be specialized.
00378 
00379 #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT
00380 template <>
00381 inline void ColumnData<complex<float> >::setDataLimits (complex<float>* limits)
00382        {
00383                 m_minLegalValue = limits[0];
00384                 m_maxLegalValue = limits[1];
00385                 m_minDataValue =  limits[2];
00386                 m_maxDataValue =  limits[3];
00387         }
00388 #else
00389 template <>
00390   void ColumnData<complex<float> >::setDataLimits (complex<float>* limits);
00391 #endif
00392 
00393 #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT
00394 template <>
00395 inline void ColumnData<complex<double> >::setDataLimits (complex<double>* limits)
00396         {
00397                 m_minLegalValue = limits[0];
00398                 m_maxLegalValue = limits[1];
00399                 m_minDataValue =  limits[2];
00400                 m_maxDataValue =  limits[3];
00401         }
00402 #else
00403  template <>
00404   void ColumnData<complex<double> >::setDataLimits (complex<double>* limits);
00405 #endif
00406 
00407 
00408 #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT
00409         template <>
00410         inline void ColumnData<string>::readColumnData (long firstRow, 
00411                                         long nelements, 
00412                                         string* nullValue)
00413         {
00414           int status = 0;
00415 
00416            int   anynul = 0;
00417            char** array = new char*[nelements]; 
00418 
00419            int j(0);
00420            for ( ; j < nelements; ++j)
00421            {
00422                array[j] = new char[width() + 1];
00423            }
00424 
00425            char* nulval = 0;
00426            if (nullValue) 
00427            {
00428                    nulval = const_cast<char*>(nullValue->c_str());
00429            }
00430            else
00431            {
00432                 nulval = new char;
00433                 *nulval = '\0';       
00434            }
00435 
00436 
00437           try
00438           {
00439                 makeHDUCurrent();
00440                 if (fits_read_col_str(fitsPointer(),index(), firstRow,1,nelements,
00441                   nulval,array, &anynul,&status) ) throw FitsError(status);
00442           }
00443           catch (FitsError)
00444           {
00445                 // ugly. but better than leaking resources.       
00446                 for (int jj = 0; jj < nelements; ++jj)
00447                 {
00448                         delete [] array[jj];
00449                 }     
00450 
00451                 delete [] array; 
00452                 delete nulval;
00453                 throw; 
00454           }
00455 
00456 
00457           if (m_data.size() != rows()) setData(std::vector<string>(rows(),string(nulval)));
00458 
00459           // the 'first -1 ' converts to zero based indexing.
00460 
00461           for ( j = 0; j < nelements; j++)
00462           {
00463                 m_data[j - 1 + firstRow] = string(array[j]);
00464           }
00465 
00466           for ( j = 0; j < nelements; j++)
00467           {
00468                 delete [] array[j];
00469           }     
00470 
00471           delete [] array; 
00472           delete nulval; 
00473           if (nelements == rows()) isRead(true); 
00474 
00475         }
00476 #else 
00477  template <>
00478 void ColumnData<string>::readColumnData (long firstRow, long nelements, string* nullValue);
00479 #endif
00480 
00481 
00482 #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT
00483         template <>
00484         inline void ColumnData<complex<float> >::readColumnData (long firstRow,
00485                                                 long nelements,
00486                                                 complex<float>* nullValue)
00487         {
00488           // specialization for ColumnData<string> 
00489           int status(0);
00490           int   anynul(0);
00491           FITSUtil::auto_array_ptr<float> pArray(new float[nelements*2]); 
00492           float* array = pArray.get();
00493           float nulval(0);
00494           makeHDUCurrent();
00495 
00496 
00497           if (fits_read_col_cmp(fitsPointer(),index(), firstRow,1,nelements,
00498                   nulval,array, &anynul,&status) ) throw FitsError(status);
00499 
00500 
00501           if (m_data.size() != rows()) m_data.resize(rows());
00502 
00503           // the 'j -1 ' converts to zero based indexing.
00504 
00505           for (int j = 0; j < nelements; ++j)
00506           {
00507 
00508                 m_data[j - 1 + firstRow] = std::complex<float>(array[2*j],array[2*j+1]);
00509           }
00510           if (nelements == rows()) isRead(true); 
00511 
00512         }
00513 #else
00514 template <> 
00515 void ColumnData<complex<float> >::readColumnData (long firstRow, long nelements,complex<float>* nullValue );
00516 #endif
00517 
00518 #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT
00519         template <>
00520         inline void ColumnData<complex<double> >::readColumnData (long firstRow, 
00521                                                         long nelements,
00522                                                         complex<double>* nullValue)
00523         {
00524           // specialization for ColumnData<complex<double> > 
00525            int status(0);
00526            int   anynul(0);
00527            FITSUtil::auto_array_ptr<double> pArray(new double[nelements*2]); 
00528            double* array = pArray.get();
00529            double nulval(0);
00530            makeHDUCurrent();
00531 
00532 
00533           if (fits_read_col_dblcmp(fitsPointer(), index(), firstRow,1,nelements,
00534                   nulval,array, &anynul,&status) ) throw FitsError(status);
00535 
00536 
00537 
00538 
00539           if (m_data.size() != rows()) setData(std::vector<complex<double> >(rows(),nulval));
00540 
00541           // the 'j -1 ' converts to zero based indexing.
00542 
00543           for (int j = 0; j < nelements; j++)
00544           {
00545 
00546                 m_data[j - 1 + firstRow] = std::complex<double>(array[2*j],array[2*j+1]);
00547           }
00548           if (nelements == rows()) isRead(true); 
00549 
00550         }
00551 #else
00552 template <>
00553 void ColumnData<complex<double> >::readColumnData (long firstRow, long nelements,complex<double>* nullValue);
00554 #endif
00555 
00556 #if SPEC_TEMPLATE_DECL_DEFECT
00557   template <>
00558   inline void ColumnData<string>::writeData (const std::vector<string>& indata, 
00559                                       long firstRow, string* nullValue)
00560   {
00561     int    status=0;
00562     char** columnData=FITSUtil::CharArray(indata);
00563 
00564     if ( fits_write_colnull(fitsPointer(), TSTRING, index(), firstRow, 1, indata.size(),
00565                             columnData, 0, &status) != 0 )
00566       throw FitsError(status);
00567     unsigned long elementsToWrite (indata.size() + firstRow - 1);
00568     std::vector<string> __tmp(m_data);
00569     if (m_data.size() < elementsToWrite) 
00570       {
00571         m_data.resize(elementsToWrite,"");
00572         std::copy(__tmp.begin(),__tmp.end(),m_data.begin());
00573       }
00574     std::copy(indata.begin(),indata.end(),m_data.begin()+firstRow-1);
00575 
00576 
00577     for (size_t i = 0; i < indata.size(); ++i)
00578       {
00579         delete [] columnData[i];
00580       }
00581     delete [] columnData;
00582   }  
00583 #else
00584 template <>
00585 void ColumnData<string>::writeData (const std::vector<string>& inData, long firstRow, string* nullValue);
00586 #endif
00587 
00588 #ifdef SPEC_TEMPLATE_DECL_DEFECT
00589   template <>
00590   inline void ColumnData<complex<float> >::writeData (const std::vector<complex<float> >& inData, 
00591                                                long firstRow, 
00592                                                complex<float>* nullValue)
00593   {
00594     int status(0);
00595     int nRows (inData.size());
00596     FITSUtil::auto_array_ptr<float> pData(new float[nRows*2]);
00597     float* Data = pData.get();
00598     std::vector<complex<float> > __tmp(m_data);
00599     for (int j = 0; j < nRows; ++j)
00600       {
00601         Data[ 2*j] = inData[j].real();
00602         Data[ 2*j + 1] = inData[j].imag();
00603       }     
00604 
00605     try
00606       {
00607 
00608         if (fits_write_col_cmp(fitsPointer(), index(), firstRow, 1, 
00609                                nRows,Data, &status) != 0) throw FitsError(status);
00610         long elementsToWrite(nRows + firstRow -1);
00611         if (elementsToWrite > static_cast<long>(m_data.size())) 
00612           {
00613 
00614             m_data.resize(elementsToWrite);
00615           }
00616 
00617         std::copy(inData.begin(),inData.end(),m_data.begin()+firstRow-1);
00618 
00619         // tell the Table that the number of rows has changed
00620         parent()->updateRows();
00621       }
00622     catch (FitsError) // the only thing that can throw here.
00623       {
00624         // reset to original content and rethrow the exception.
00625         m_data.resize(__tmp.size());
00626         m_data = __tmp;
00627       }      
00628 
00629   }
00630 
00631 #else
00632 template <>
00633 void ColumnData<complex<float> >::writeData (const std::vector<complex<float> >& inData, long firstRow, 
00634                                 complex<float>* nullValue);
00635 #endif
00636 
00637 #ifdef SPEC_TEMPLATE_DECL_DEFECT
00638   template <>
00639   inline void ColumnData<complex<double> >::writeData (const std::vector<complex<double> >& inData, 
00640                                                 long firstRow, 
00641                                                 complex<double>* nullValue)
00642   {
00643     int status(0);
00644     int nRows (inData.size());
00645     FITSUtil::auto_array_ptr<double> pData(new double[nRows*2]);
00646     double* Data = pData.get();
00647     std::vector<complex<double> > __tmp(m_data);
00648     for (int j = 0; j < nRows; ++j)
00649       {
00650         pData[ 2*j] = inData[j].real();
00651         pData[ 2*j + 1] = inData[j].imag();
00652       }     
00653 
00654     try
00655       {
00656 
00657         if (fits_write_col_dblcmp(fitsPointer(), index(), firstRow, 1, 
00658                                   nRows,Data, &status) != 0) throw FitsError(status);
00659         long elementsToWrite(nRows + firstRow -1);
00660         if (elementsToWrite > static_cast<long>(m_data.size())) 
00661           {
00662 
00663             m_data.resize(elementsToWrite);
00664           }
00665 
00666         std::copy(inData.begin(),inData.end(),m_data.begin()+firstRow-1);
00667 
00668         // tell the Table that the number of rows has changed
00669         parent()->updateRows();
00670       }
00671     catch (FitsError) // the only thing that can throw here.
00672       {
00673         // reset to original content and rethrow the exception.
00674         m_data.resize(__tmp.size());
00675         m_data = __tmp;
00676       }      
00677 
00678   }
00679 
00680 #else
00681 template <>
00682 void ColumnData<complex<double> >::writeData (const std::vector<complex<double> >& inData, long firstRow, 
00683                                 complex<double>* nullValue);
00684 
00685 #endif
00686 } // namespace CCfits
00687 
00688 
00689 #endif
Generated on Tue Dec 6 2011 16:12:51 for CCfits by   doxygen 1.7.5.1
CCfits/html/ColumnT_8h_source.html0000644000225700000360000055447611667502523016745 0ustar cagordonlhea CCfits: ColumnT.h Source File
CCfits  2.4
ColumnT.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef COLUMNT_H
00010 #define COLUMNT_H
00011 
00012 #ifdef _MSC_VER
00013 #include "MSconfig.h"
00014 #endif
00015 
00016 #include "ColumnData.h"
00017 #include "ColumnVectorData.h"
00018 #include "FITSUtil.h"
00019 #include <typeinfo>
00020 #include <vector>
00021 #include <algorithm>
00022 #include "NewKeyword.h"
00023 
00024 #ifdef SSTREAM_DEFECT
00025 #       include <strstream>
00026 #else
00027 #       include <sstream>
00028 #endif
00029 
00030 
00031 // by design, if the data are not read yet we will return an exception.
00032 // here the test is if the entire column has already been read. 
00033 using std::complex;
00034 using std::valarray;
00035 
00036 // get specified elements of a scalar column. These two functions allow the
00037 // user to return either a vector or a valarray depending on the input container.
00038 
00039 namespace CCfits 
00040 {
00041    template <typename S>
00042    void Column::read(std::vector<S>& vals, long first, long last) 
00043    {
00044            read(vals,first,last,static_cast<S*>(0));
00045    }
00046 
00047 
00048    template <typename S>
00049    void Column::read(std::vector<S>& vals, long first, long last, S* nullValue) 
00050    {
00051            // problem: S does not give the type of the Column, but the return type,
00052            // so the user must specify this.
00053            parent()->makeThisCurrent();
00054            long nelements = numberOfElements(first,last);
00055 
00056            if  (ColumnData<S>* col = dynamic_cast<ColumnData<S>*>(this))
00057            {
00058                    // fails if user requested outputType different from input type.
00059 
00060 
00061                    if (!isRead()) col->readColumnData(first,nelements,nullValue);
00062                    // scalar column with vector output can just be assigned.
00063                    FITSUtil::fill(vals,col->data(),first,last);
00064            }
00065            else
00066            {
00067                    FITSUtil::MatchType<S> outputType;
00068                    if ( outputType() == type() ) 
00069                    { 
00070                            // in this case user tried to read vector data from scalar,
00071                            // (i.e. first argument was vector<valarray<S> >.
00072                            // since the cast won't fail on template parameter grounds.
00073                            throw Column::WrongColumnType(name());
00074                    }
00075 
00076                    try
00077                    {
00078                        // about exceptions. The dynamic_casts could throw
00079                        // std::bad_cast. If this happens something is seriously
00080                        // wrong since the Column stores the value of type() 
00081                        // appropriate to each of the casts on construction.
00082                        // 
00083                        // the InvalidDataType exception should not be possible.
00084                        if  ( type() == Tdouble )
00085                        {
00086                                ColumnData<double>& col 
00087                                          = dynamic_cast<ColumnData<double>&>(*this);
00088                                if (!isRead()) col.readColumnData(first,nelements);                                  
00089                                FITSUtil::fill(vals,col.data(),first,last);
00090 
00091                        }
00092                        else if (type() == Tfloat)
00093                        {
00094                                ColumnData<float>& col 
00095                                        = dynamic_cast<ColumnData<float>&>(*this);
00096                                if (!isRead()) col.readColumnData(first,nelements);                                  
00097                                FITSUtil::fill(vals,col.data(),first,last);
00098                        }
00099                        else if (type() == Tint)
00100                        {
00101                                int nullVal(0);
00102                                if (nullValue) nullVal = static_cast<int>(*nullValue);
00103                                ColumnData<int>& col  
00104                                   = dynamic_cast<ColumnData<int>&>(*this);
00105                                if (!isRead()) col.readColumnData(first,nelements,&nullVal);                                  
00106                                FITSUtil::fill(vals,col.data(),first,last);
00107                        }
00108                        else if (type() == Tshort)
00109                        {
00110                                short nullVal(0);
00111                                if (nullValue) nullVal = static_cast<short>(*nullValue);
00112                                ColumnData<short>& col 
00113                                 = dynamic_cast<ColumnData<short>&>(*this);
00114                                if (!isRead()) col.readColumnData(first,nelements,&nullVal);                                  
00115                                FITSUtil::fill(vals,col.data(),first,last);
00116                        }
00117                        else if (type() == Tlong)
00118                        {        
00119                                long nullVal(0);
00120                                if (nullValue) nullVal = static_cast<long>(*nullValue); 
00121                                ColumnData<long>& col 
00122                                  = dynamic_cast<ColumnData<long>&>(*this);
00123                                if (!isRead()) col.readColumnData(first,nelements,&nullVal);                                  
00124                                FITSUtil::fill(vals,col.data(),first,last);
00125                        }
00126                        else if (type() == Tlonglong)
00127                        {        
00128                                LONGLONG nullVal(0);
00129                                if (nullValue) nullVal = static_cast<LONGLONG>(*nullValue); 
00130                                ColumnData<LONGLONG>& col 
00131                                  = dynamic_cast<ColumnData<LONGLONG>&>(*this);
00132                                if (!isRead()) col.readColumnData(first,nelements,&nullVal);                                  
00133                                FITSUtil::fill(vals,col.data(),first,last);
00134                        }
00135                        else if (type() == Tlogical)
00136                        {        
00137                                bool nullVal(0);
00138                                if (nullValue) nullVal = static_cast<bool>(*nullValue); 
00139                                ColumnData<bool>& col 
00140                                  = dynamic_cast<ColumnData<bool>&>(*this);
00141                                if (!isRead()) col.readColumnData(first,nelements,&nullVal);                                  
00142                                FITSUtil::fill(vals,col.data(),first,last);
00143                        }
00144                        else if (type() == Tbit || type() == Tbyte)
00145                        {
00146                                unsigned char nullVal(0);
00147                                if (nullValue) nullVal = static_cast<unsigned char>(*nullValue); 
00148                                ColumnData<unsigned char>& col 
00149                                        = dynamic_cast<ColumnData<unsigned char>&>(*this);
00150                                if (!isRead()) col.readColumnData(first,nelements,&nullVal); 
00151                                FITSUtil::fill(vals,col.data(),first,last);
00152                        }
00153                        else if (type() == Tushort)
00154                        {
00155                                unsigned short nullVal(0);
00156                                if (nullValue) nullVal= static_cast<unsigned short>(*nullValue);
00157                                ColumnData<unsigned short>& col 
00158                                        = dynamic_cast<ColumnData<unsigned short>&>(*this);
00159                                if (!isRead()) col.readColumnData(first,nelements,&nullVal);                                  
00160                                FITSUtil::fill(vals,col.data(),first,last);
00161                        }
00162                        else if (type() == Tuint)
00163                        {
00164                                unsigned int nullVal(0);
00165                                if (nullValue) nullVal = static_cast<unsigned int>(*nullValue);
00166                                ColumnData<unsigned int>& col 
00167                                        = dynamic_cast<ColumnData<unsigned int>&>(*this);
00168                                if (!isRead()) col.readColumnData(first,nelements,&nullVal);                                  
00169                                FITSUtil::fill(vals,col.data(),first,last);
00170                        }
00171                        else if (type() == Tulong)
00172                        {
00173                                unsigned long nullVal(0);
00174                                if (nullValue) nullVal = static_cast<unsigned long>(*nullValue);
00175                                ColumnData<unsigned long>& col 
00176                                         = dynamic_cast<ColumnData<unsigned long>&>(*this);
00177                                if (!isRead()) col.readColumnData(first,nelements,&nullVal);                                  
00178                                FITSUtil::fill(vals,col.data(),first,last);
00179                        }
00180                        else
00181                        {
00182                                  throw InvalidDataType(name());
00183 
00184                        }
00185 
00186                    }
00187                    catch (std::bad_cast)
00188                    {
00189                            throw WrongColumnType(name());
00190                    }
00191            }
00192 
00193    }
00194 
00195    template <typename S>
00196    void Column::read(std::valarray<S>& vals, long first, long last) 
00197    {
00198            read(vals,first,last,static_cast<S*>(0));
00199    }
00200 
00201 
00202    template <typename S>
00203    void Column::read(std::valarray<S>& vals, long first, long last, S* nullValue) 
00204    {        
00205            // require the whole scalar column to have been read.
00206 
00207 
00208            long nelements = numberOfElements(first,last);
00209            parent()->makeThisCurrent();                
00210            if ( ColumnData<S>* col = dynamic_cast<ColumnData<S>*>(this))
00211            {
00212                    // fails if user requested outputType different from input type.
00213 
00214 
00215                    if (!isRead()) col->readColumnData(first,nelements,nullValue);                                  
00216                    FITSUtil::fill(vals,col->data(),first,last);
00217 
00218            }
00219            else
00220            {
00221                    FITSUtil::MatchType<S> outputType;
00222                    if ( outputType() == type() ) 
00223                    { 
00224                            // in this case user tried to read vector data from scalar,
00225                            // (i.e. first argument was vector<valarray<S> >.
00226                            // since the cast won't fail on template parameter grounds.
00227                            throw Column::WrongColumnType(name());
00228                    }
00229 
00230                    try
00231                    {
00232                        // about exceptions. The dynamic_casts could throw
00233                        // std::bad_cast. If this happens something is seriously
00234                        // wrong since the Column stores the value of type() 
00235                        // appropriate to each of the casts on construction.
00236                        // 
00237                        // the InvalidDataType exception should not be possible.
00238                        if  ( type() == Tdouble )
00239                        {
00240                                ColumnData<double>& col 
00241                                          = dynamic_cast<ColumnData<double>&>(*this);
00242                                if (!isRead()) col.readColumnData(first,nelements);                                  
00243                                FITSUtil::fill(vals,col.data(),first,last);
00244                        }
00245                        else if (type() == Tfloat)
00246                        {
00247                                ColumnData<float>& col 
00248                                        = dynamic_cast<ColumnData<float>&>(*this);
00249                                if (!isRead()) col.readColumnData(first,nelements);                                  
00250                                FITSUtil::fill(vals,col.data(),first,last);
00251                        }
00252                        else if (type() == Tint)
00253                        {
00254                                int nullVal(0);
00255                                if (nullValue) nullVal = static_cast<int>(*nullValue); 
00256                                ColumnData<int>& col  
00257                                        = dynamic_cast<ColumnData<int>&>(*this);
00258                                if (!isRead()) col.readColumnData(first,nelements,&nullVal);                                    
00259                                FITSUtil::fill(vals,col.data(),first,last);
00260                        }
00261                        else if (type() == Tshort)
00262                        {
00263                                short nullVal(0);
00264                                if (nullValue) nullVal = static_cast<short>(*nullValue); 
00265                                ColumnData<short>& col 
00266                                        = dynamic_cast<ColumnData<short>&>(*this);
00267                                if (!isRead()) col.readColumnData(first,nelements,&nullVal);                                    
00268                                FITSUtil::fill(vals,col.data(),first,last);
00269                        }
00270                        else if (type() == Tlong)
00271                        {        
00272                                long nullVal(0);
00273                                if (nullValue) nullVal = static_cast<long>(*nullValue); 
00274                                ColumnData<long>& col 
00275                                        = dynamic_cast<ColumnData<long>&>(*this);
00276                                if (!isRead()) col.readColumnData(first,nelements,&nullVal);
00277                                FITSUtil::fill(vals,col.data(),first,last);
00278                        }
00279                        else if (type() == Tlonglong)
00280                        {        
00281                                LONGLONG nullVal(0);
00282                                if (nullValue) nullVal = static_cast<LONGLONG>(*nullValue); 
00283                                ColumnData<LONGLONG>& col 
00284                                        = dynamic_cast<ColumnData<LONGLONG>&>(*this);
00285                                if (!isRead()) col.readColumnData(first,nelements,&nullVal);
00286                                FITSUtil::fill(vals,col.data(),first,last);
00287                        }
00288                        else if (type() == Tlogical)
00289                        {        
00290                                bool nullVal(0);
00291                                if (nullValue) nullVal = static_cast<bool>(*nullValue); 
00292                                ColumnData<bool>& col 
00293                                        = dynamic_cast<ColumnData<bool>&>(*this);
00294                                if (!isRead()) col.readColumnData(first,nelements,&nullVal);                                    
00295                                FITSUtil::fill(vals,col.data(),first,last);
00296                        }
00297                        else if (type() == Tbit || type() == Tbyte)
00298                        {
00299                                unsigned char nullVal(0);
00300                                if (nullValue) nullVal = static_cast<unsigned char>(*nullValue); 
00301                                ColumnData<unsigned char>& col 
00302                                        = dynamic_cast<ColumnData<unsigned char>&>(*this);
00303                                if (!isRead()) col.readColumnData(first,nelements,&nullVal);                                    
00304                                FITSUtil::fill(vals,col.data(),first,last);
00305                        }
00306                        else if (type() == Tushort)
00307                        {
00308                                unsigned short nullVal(0);
00309                                if (nullValue) nullVal 
00310                                        = static_cast<unsigned short>(*nullValue); 
00311                                ColumnData<unsigned short>& col 
00312                                        = dynamic_cast<ColumnData<unsigned short>&>(*this);
00313                                if (!isRead()) col.readColumnData(first,nelements,&nullVal);                                    
00314                                FITSUtil::fill(vals,col.data(),first,last);
00315                        }
00316                        else if (type() == Tuint)
00317                        {
00318                                unsigned int nullVal(0);
00319                                if (nullValue) nullVal 
00320                                        = static_cast<unsigned int>(*nullValue); 
00321                                ColumnData<unsigned int>& col 
00322                                        = dynamic_cast<ColumnData<unsigned int>&>(*this);
00323                                if (!isRead()) col.readColumnData(first,nelements,&nullVal);                                    
00324                                FITSUtil::fill(vals,col.data(),first,last);
00325                        }
00326                        else if (type() == Tulong)
00327                        {
00328                                unsigned long nullVal(0);
00329                                if (nullValue) nullVal 
00330                                        = static_cast<unsigned long>(*nullValue); 
00331                                ColumnData<unsigned long>& col 
00332                                        = dynamic_cast<ColumnData<unsigned long>&>(*this);
00333                                if (!isRead()) col.readColumnData(first,nelements,&nullVal);                                    
00334                                FITSUtil::fill(vals,col.data(),first,last);
00335                        }
00336                        else
00337                        {
00338                                  throw InvalidDataType(name());
00339 
00340                        }
00341 
00342                    }
00343                    catch (std::bad_cast)
00344                    {
00345                         throw WrongColumnType(name());
00346                    }
00347                }
00348 
00349    }
00350 
00351    // get a single row from a vector column. There's no default row number, must
00352    // be specified.
00353    template <typename S>
00354    void Column::read(std::valarray<S>& vals, long row) 
00355    {
00356            read(vals,row,static_cast<S*>(0));
00357    }
00358 
00359 
00360    template <typename S>
00361    void Column::read(std::valarray<S>& vals, long row, S* nullValue) 
00362    {
00363            if (row > parent()->rows())
00364            {
00365               throw Column::InvalidRowNumber(name());
00366            }
00367            parent()->makeThisCurrent();                
00368            // isRead() returns true if the data were read in the ctor.
00369            if ( ColumnVectorData<S>* col = dynamic_cast<ColumnVectorData<S>*>(this))
00370            {
00371                    // fails if user requested outputType different from input type.
00372 
00373 
00374 
00375                    // input and output are both valarrays. Since one should not
00376                    // be able to call a constructor for a non-numeric valarray type,
00377                    // there shouldn't be any InvalidType problems. However, there
00378                    // is still the vector/scalar possibility and the implicit
00379                    // conversion request to deal with.
00380 
00381                    if (!isRead()) col->readRow(row,nullValue);
00382                    FITSUtil::fill(vals,col->data(row));
00383            }
00384            else
00385            {
00386                    FITSUtil::MatchType<S> outputType;
00387                    if ( outputType() == type() ) 
00388                    { 
00389                            // in this case user tried to read vector row from scalar column.
00390                            // one could be charitable and return a valarray of size 1,
00391                            // but... I'm going to throw an exception suggesting the user
00392                            // might not have meant that.
00393 
00394                            throw Column::WrongColumnType(name());
00395                    }
00396 
00397                    // the InvalidDataType exception should not be possible.
00398                    try
00399                    {
00400                        // about exceptions. The dynamic_casts could throw
00401                        // std::bad_cast. If this happens something is seriously
00402                        // wrong since the Column stores the value of type() 
00403                        // appropriate to each of the casts on construction.
00404                        // 
00405                        // the InvalidDataType exception should not be possible.
00406                        if  ( type() == Tdouble || type() == VTdouble )
00407                        {
00408                                ColumnVectorData<double>& col 
00409                                          = dynamic_cast<ColumnVectorData<double>&>(*this);
00410                                if (!isRead()) col.readRow(row);                                  
00411                                FITSUtil::fill(vals,col.data(row));
00412 
00413                        }
00414                        else if (type() == Tfloat  || type() == VTfloat )
00415                        { 
00416                                ColumnVectorData<float>& col 
00417                                      = dynamic_cast<ColumnVectorData<float>&>(*this);
00418                                if (!isRead()) col.readRow(row); 
00419                                FITSUtil::fill(vals,col.data(row));
00420                        }
00421                        else if (type() == Tint  || type() == VTint )
00422                        {
00423                                int nullVal(0);
00424                                if (nullValue) nullVal = static_cast<int>(*nullValue); 
00425                                ColumnVectorData<int>& col  
00426                                        = dynamic_cast<ColumnVectorData<int>&>(*this);
00427                                if (!isRead()) col.readRow(row,&nullVal); 
00428                                FITSUtil::fill(vals,col.data(row));
00429                        }
00430                        else if (type() == Tshort  || type() == VTshort  )
00431                        {
00432                                short nullVal(0);
00433                                if (nullValue) nullVal = static_cast<short>(*nullValue); 
00434                                ColumnVectorData<short>& col 
00435                                        = dynamic_cast<ColumnVectorData<short>&>(*this);
00436                                if (!isRead()) col.readRow(row,&nullVal); 
00437                                FITSUtil::fill(vals,col.data(row));
00438                        }
00439                        else if (type() == Tlong  || type() == VTlong )
00440                        {        
00441                                long nullVal(0);
00442                                if (nullValue) nullVal = static_cast<long>(*nullValue); 
00443                                ColumnVectorData<long>& col 
00444                                        = dynamic_cast<ColumnVectorData<long>&>(*this);
00445                                if (!isRead()) col.readRow(row,&nullVal); 
00446                                FITSUtil::fill(vals,col.data(row));
00447                        }
00448                        else if (type() == Tlonglong  || type() == VTlonglong )
00449                        {        
00450                                LONGLONG nullVal(0);
00451                                if (nullValue) nullVal = static_cast<LONGLONG>(*nullValue); 
00452                                ColumnVectorData<LONGLONG>& col 
00453                                        = dynamic_cast<ColumnVectorData<LONGLONG>&>(*this);
00454                                if (!isRead()) col.readRow(row,&nullVal); 
00455                                FITSUtil::fill(vals,col.data(row));
00456                        }
00457                        else if (type() == Tlogical  || type() == VTlogical )
00458                        {        
00459                                bool nullVal(0);
00460                                if (nullValue) nullVal = static_cast<bool>(*nullValue); 
00461                                ColumnVectorData<bool>& col 
00462                                        = dynamic_cast<ColumnVectorData<bool>&>(*this);
00463                                if (!isRead()) col.readRow(row,&nullVal); 
00464                                FITSUtil::fill(vals,col.data(row));
00465                        }
00466                        else if (type() == Tbit || type() == Tbyte ||  
00467                                type() == VTbit || type() == VTbyte )
00468                        {
00469                                unsigned char nullVal(0);
00470                                if (nullValue) nullVal 
00471                                            = static_cast<unsigned char>(*nullValue); 
00472                                ColumnVectorData<unsigned char>& col 
00473                                      = dynamic_cast<ColumnVectorData<unsigned char>&>(*this);
00474                                if (!isRead()) col.readRow(row,&nullVal); 
00475                                FITSUtil::fill(vals,col.data(row));
00476                        }
00477                        else if (type() == Tushort || type() == VTushort)
00478                        {
00479                                unsigned short nullVal(0);
00480                                if (nullValue) nullVal 
00481                                            = static_cast<unsigned short>(*nullValue); 
00482                                ColumnVectorData<unsigned short>& col 
00483                                      = dynamic_cast<ColumnVectorData<unsigned short>&>(*this);
00484                                if (!isRead()) col.readRow(row,&nullVal); 
00485                                FITSUtil::fill(vals,col.data(row));
00486                        }
00487                        else if (type() == Tuint || type() == VTuint)
00488                        {
00489                                unsigned int nullVal(0);
00490                                if (nullValue) nullVal 
00491                                            = static_cast<unsigned int>(*nullValue); 
00492                                ColumnVectorData<unsigned int>& col 
00493                                      = dynamic_cast<ColumnVectorData<unsigned int>&>(*this);
00494                                if (!isRead()) col.readRow(row,&nullVal); 
00495                                FITSUtil::fill(vals,col.data(row));
00496                        }
00497                        else if (type() == Tulong || type() == VTulong)
00498                        {
00499                                unsigned long nullVal(0);
00500                                if (nullValue) nullVal 
00501                                            = static_cast<unsigned long>(*nullValue); 
00502                                ColumnVectorData<unsigned long>& col 
00503                                        = dynamic_cast<ColumnVectorData<unsigned long>&>(*this);
00504                                if (!isRead()) col.readRow(row,&nullVal); 
00505                                FITSUtil::fill(vals,col.data(row));
00506                        }
00507                        else
00508                        {
00509                                throw InvalidDataType(name());
00510 
00511                        }
00512 
00513                    }
00514                    catch (std::bad_cast)
00515                    {
00516                        throw WrongColumnType(name());
00517                    }     
00518             }
00519    }
00520 
00521    template <typename S>
00522    void Column::readArrays(std::vector<std::valarray<S> >& vals, long first, long last)  
00523    {
00524            readArrays(vals,first,last,static_cast<S*>(0));
00525    }
00526 
00527    template <typename S>
00528    void Column::readArrays(std::vector<std::valarray<S> >& vals, 
00529                            long first, long last, S* nullValue)
00530    {
00531 
00532            parent()->makeThisCurrent();
00533            // again, can only call this if the entire column has been read from disk.
00534            // user expects 1 based indexing. If 0 based indices are supplied,
00535            // add one to both ranges.
00536            long range = numberOfElements(first,last);
00537 
00538            vals.resize(range);
00539 
00540 
00541            if ( ColumnVectorData<S>* col = dynamic_cast<ColumnVectorData<S>*>(this))
00542            {
00543                    for (int j = 0; j < range; ++j) 
00544                    {
00545                            if (!isRead()) col->readRow(j + first,nullValue);                             
00546                            FITSUtil::fill(vals[j],col->data(j+first));
00547                    }
00548            }
00549            else
00550            {
00551                    FITSUtil::MatchType<S> outputType;
00552                    if ( outputType() == type() ) 
00553                    { 
00554                            // in this case user tried to read vector data from scalar,
00555                            // (i.e. first argument was vector<valarray<S> >.
00556                            // since the cast won't fail on template parameter grounds.
00557                            throw Column::WrongColumnType(name());
00558                    }
00559                    // the InvalidDataType exception should not be possible.
00560                    try
00561                    {
00562                        if  ( type() == Tdouble || type() == VTdouble )
00563                        {
00564                                ColumnVectorData<double>& col 
00565                                        = dynamic_cast<ColumnVectorData<double>&>(*this);
00566                                for (int j = 0; j < range; ++j) 
00567                                {
00568                                    if (!isRead()) col.readRow(j + first); 
00569                                    FITSUtil::fill(vals[j],col.data(j+first));
00570                                }
00571                        }
00572                        else if  ( type() == Tfloat || type() == VTfloat  )
00573                        {
00574                                ColumnVectorData<float>& col 
00575                                        = dynamic_cast<ColumnVectorData<float>&>(*this);
00576                                for (int j = 0; j < range; ++j) 
00577                                {
00578                                    if (!isRead()) col.readRow(j + first); 
00579                                    FITSUtil::fill(vals[j],col.data(j+first));
00580                                }
00581                        }
00582                        else if  ( type() == Tint   || type() == VTint )
00583                        {
00584                                int nullVal(0);
00585                                if (nullValue) nullVal  = static_cast<int>(*nullValue); 
00586                                ColumnVectorData<int>& col  
00587                                        = dynamic_cast<ColumnVectorData<int>&>(*this);
00588                                for (int j = 0; j < range; ++j) 
00589                                {
00590                                    if (!isRead()) col.readRow(j + first,&nullVal); 
00591                                    FITSUtil::fill(vals[j],col.data(j+first));
00592                                }
00593                        }
00594                        else if  ( type() == Tshort  || type() == VTshort )
00595                        {
00596                                short nullVal(0);
00597                                if (nullValue) nullVal  = static_cast<short>(*nullValue); 
00598                                ColumnVectorData<short>& col 
00599                                        = dynamic_cast<ColumnVectorData<short>&>(*this);
00600                                for (int j = 0; j < range; ++j) 
00601                                {
00602                                    if (!isRead()) col.readRow(j + first,&nullVal); 
00603                                    FITSUtil::fill(vals[j],col.data(j+first));
00604                                }
00605                        }
00606                        else if  ( type() == Tlong   || type() == VTlong )
00607                        {
00608                                long nullVal(0);
00609                                if (nullValue) nullVal  = static_cast<long>(*nullValue); 
00610                                ColumnVectorData<long>& col 
00611                                        = dynamic_cast<ColumnVectorData<long>&>(*this);
00612                                for (int j = 0; j < range; ++j) 
00613                                {
00614                                    if (!isRead()) col.readRow(j + first,&nullVal); 
00615                                    FITSUtil::fill(vals[j],col.data(j+first));
00616                                }
00617                        }
00618                        else if  ( type() == Tlonglong   || type() == VTlonglong )
00619                        {
00620                                LONGLONG nullVal(0);
00621                                if (nullValue) nullVal  = static_cast<LONGLONG>(*nullValue); 
00622                                ColumnVectorData<LONGLONG>& col 
00623                                        = dynamic_cast<ColumnVectorData<LONGLONG>&>(*this);
00624                                for (int j = 0; j < range; ++j) 
00625                                {
00626                                    if (!isRead()) col.readRow(j + first,&nullVal); 
00627                                    FITSUtil::fill(vals[j],col.data(j+first));
00628                                }
00629                        }
00630                        else if  ( type() == Tlogical   || type() == VTlogical )
00631                        {
00632                                bool nullVal(0);
00633                                if (nullValue) nullVal   = static_cast<bool>(*nullValue); 
00634                                ColumnVectorData<bool>& col 
00635                                        = dynamic_cast<ColumnVectorData<bool>&>(*this);
00636                                for (int j = 0; j < range; ++j) 
00637                                {
00638                                    if (!isRead()) col.readRow(j + first,&nullVal); 
00639                                    FITSUtil::fill(vals[j],col.data(j+first));
00640                                }
00641                        }
00642                        else if (type() == Tbit || type() == Tbyte ||  
00643                                type() == VTbit || type() == VTbyte )
00644                        {
00645                                unsigned char nullVal(0);
00646                                if (nullValue) nullVal 
00647                                            = static_cast<unsigned char>(*nullValue); 
00648                                ColumnVectorData<unsigned char>& col 
00649                                       = dynamic_cast<ColumnVectorData<unsigned char>&>(*this);
00650                                for (int j = 0; j < range; ++j) 
00651                                {
00652                                    if (!isRead()) col.readRow(j + first,&nullVal); 
00653                                    FITSUtil::fill(vals[j],col.data(j+first));
00654                                }
00655                        }                            
00656                        else if  ( type() == Tushort   || type() == VTushort )
00657                        {
00658                                unsigned short nullVal(0);
00659                                if (nullValue) nullVal 
00660                                            = static_cast<unsigned short>(*nullValue); 
00661                                ColumnVectorData<unsigned short>& col 
00662                                    = dynamic_cast<ColumnVectorData<unsigned short>&>(*this);
00663                                for (int j = 0; j < range; ++j) 
00664                                {
00665                                    if (!isRead()) col.readRow(j + first,&nullVal); 
00666                                    FITSUtil::fill(vals[j],col.data(j+first));
00667                                }
00668                        }
00669                        else if  ( type() == Tuint   || type() == VTuint )
00670                        {
00671                                unsigned int nullVal(0);
00672                                if (nullValue) nullVal 
00673                                            = static_cast<unsigned int>(*nullValue); 
00674                                ColumnVectorData<unsigned int>& col 
00675                                        = dynamic_cast<ColumnVectorData<unsigned int>&>(*this);
00676                                for (int j = 0; j < range; ++j) 
00677                                {
00678                                    if (!isRead()) col.readRow(j + first,&nullVal); 
00679                                    FITSUtil::fill(vals[j],col.data(j+first));
00680                                }
00681                        }
00682                        else if  ( type() == Tulong   || type() == VTulong  )
00683                        {
00684                                unsigned long nullVal(0);
00685                                if (nullValue) nullVal 
00686                                            = static_cast<unsigned long>(*nullValue); 
00687                                ColumnVectorData<unsigned long>& col 
00688                                      = dynamic_cast<ColumnVectorData<unsigned long>&>(*this);
00689                                for (int j = 0; j < range; ++j) 
00690                                {
00691                                    if (!isRead()) col.readRow(j + first,&nullVal); 
00692                                    FITSUtil::fill(vals[j],col.data(j+first));
00693                                }
00694                        } 
00695                        else
00696                        {
00697                                throw InvalidDataType(name());
00698                        }
00699 
00700                    }
00701                    catch (std::bad_cast)
00702                    {
00703                        throw WrongColumnType(name());
00704 
00705                    }     
00706 
00707            }        
00708    }
00709 
00710    template <typename S>                   
00711    void Column::write (const std::vector<S>& indata, long firstRow)
00712    {
00713       // nullValue is now a pointer, so this is ok. 
00714       // got to cast the 0 to a pointer to S to avoid
00715       // overloading ambiguities.      
00716       write(indata,firstRow,static_cast<S*>(0));
00717    }
00718 
00719    template <typename S>                   
00720    void Column::write (const std::valarray<S>& indata, long firstRow)
00721    {
00722       size_t n(indata.size());
00723       std::vector<S> __tmp(n);
00724       for (size_t j = 0; j < n; ++j) __tmp[j] = indata[j];
00725       write(__tmp,firstRow,static_cast<S*>(0));
00726    }
00727 
00728    template <typename S>                   
00729    void Column::write (S* indata, long nRows, long firstRow)
00730    {
00731       write(indata,nRows,firstRow,static_cast<S*>(0));                
00732    }
00733 
00734 
00735    template <typename S>                   
00736    void Column::write (const std::vector<S>& indata, long firstRow, S* nullValue)
00737    {
00738       // although underlying code needs to convert the input vector
00739       // into a C array, this must be the underlying implementation
00740       // [which the others call] because it accepts string arguments
00741       // which the version with a pointer won't. [no version that
00742       // translates to a char** argument].
00743 
00744 
00745       parent()->makeThisCurrent();
00746       firstRow = std::max(firstRow,static_cast<long>(1));
00747       if (ColumnData<S>* col = dynamic_cast<ColumnData<S>*>(this))
00748       {
00749          col->writeData(indata,firstRow,nullValue);
00750       }
00751       else
00752       {
00753          // alright, input data type has to be rewritten as output
00754          // data type.
00755          FITSUtil::MatchType<S> inType;
00756          if ( inType() == type()) 
00757          {
00758                  String msg("Incorrect call: writing to vector column ");
00759                  msg += name();
00760                  msg += " requires specification of # rows or vector lengths";
00761                  throw WrongColumnType(msg);
00762          }
00763          else
00764          {
00765              if  ( type() == Tdouble )
00766              {
00767                  ColumnData<double>& col 
00768                          = dynamic_cast<ColumnData<double>&>(*this);
00769                  std::vector<double> __tmp;
00770                  FITSUtil::fill(__tmp,indata,1,indata.size());
00771                  col.writeData(__tmp,firstRow);
00772              }
00773              else if  ( type() == Tfloat )
00774              {
00775                  ColumnData<float>& col 
00776                          = dynamic_cast<ColumnData<float>&>(*this);
00777                  std::vector<float> __tmp;
00778                  FITSUtil::fill(__tmp,indata,1,indata.size());
00779                  col.writeData(__tmp,firstRow);
00780              }
00781              else if  ( type() == Tint )
00782              {
00783                  int nullVal = 0;
00784                  int* pNullVal = 0;
00785                  if (nullValue)
00786                  {
00787                     nullVal = static_cast<int>(*nullValue);
00788                     pNullVal = &nullVal;
00789                  }
00790                  if (nullValue) nullVal = static_cast<int>(*nullValue); 
00791                  ColumnData<int>& col  
00792                          = dynamic_cast<ColumnData<int>&>(*this);
00793                  std::vector<int> __tmp;
00794                  FITSUtil::fill(__tmp,indata,1,indata.size());
00795                  col.writeData(__tmp,firstRow,pNullVal);
00796              }
00797              else if  ( type() == Tshort )
00798              {
00799                  short nullVal(0);
00800                  short* pNullVal = 0;
00801                  if (nullValue) 
00802                  {
00803                     nullVal = static_cast<short>(*nullValue); 
00804                     pNullVal = &nullVal;
00805                  }
00806                  ColumnData<short>& col 
00807                          = dynamic_cast<ColumnData<short>&>(*this);
00808                  std::vector<short> __tmp;
00809                  FITSUtil::fill(__tmp,indata,1,indata.size());
00810                  col.writeData(__tmp,firstRow,pNullVal);
00811              }
00812              else if  ( type() == Tlong )
00813              {
00814                  long nullVal(0);
00815                  long* pNullVal = 0;
00816                  if (nullValue)
00817                  {
00818                     nullVal = static_cast<long>(*nullValue); 
00819                     pNullVal = &nullVal;
00820                  }
00821                  ColumnData<long>& col 
00822                          = dynamic_cast<ColumnData<long>&>(*this);
00823                  std::vector<long> __tmp;
00824                  FITSUtil::fill(__tmp,indata,1,indata.size());
00825                  col.writeData(__tmp,firstRow,pNullVal);
00826              }
00827              else if  ( type() == Tlonglong )
00828              {
00829                  LONGLONG nullVal(0);
00830                  LONGLONG* pNullVal = 0;
00831                  if (nullValue)
00832                  {
00833                     nullVal = static_cast<LONGLONG>(*nullValue); 
00834                     pNullVal = &nullVal;
00835                  }
00836                  ColumnData<LONGLONG>& col 
00837                          = dynamic_cast<ColumnData<LONGLONG>&>(*this);
00838                  std::vector<LONGLONG> __tmp;
00839                  FITSUtil::fill(__tmp,indata,1,indata.size());
00840                  col.writeData(__tmp,firstRow,pNullVal);
00841              }
00842              else if  ( type() == Tlogical )
00843              {
00844                  bool nullVal(0);
00845                  bool* pNullVal = 0;
00846                  if (nullValue)
00847                  {
00848                     nullVal = static_cast<bool>(*nullValue); 
00849                     pNullVal = &nullVal;
00850                  }
00851                  ColumnData<bool>& col 
00852                          = dynamic_cast<ColumnData<bool>&>(*this);
00853                  std::vector<bool> __tmp;
00854                  FITSUtil::fill(__tmp,indata,1,indata.size());
00855                  col.writeData(__tmp,firstRow,pNullVal);
00856              }
00857              else if  ( type() == Tbyte )
00858              {
00859                  unsigned char nullVal(0);
00860                  unsigned char* pNullVal = 0;
00861                  if (nullValue)
00862                  {
00863                     nullVal = static_cast<unsigned char>(*nullValue); 
00864                     pNullVal = &nullVal;
00865                  }
00866                  ColumnData<unsigned char>& col 
00867                          = dynamic_cast<ColumnData<unsigned char>&>(*this);
00868                  std::vector<unsigned char> __tmp;
00869                  FITSUtil::fill(__tmp,indata,1,indata.size());
00870                  col.writeData(__tmp,firstRow,pNullVal);
00871              }                            
00872              else if  ( type() == Tushort )
00873              {
00874                  unsigned short nullVal(0);
00875                  unsigned short* pNullVal = 0;
00876                  if (nullValue)
00877                  {
00878                     nullVal = static_cast<unsigned short>(*nullValue);
00879                     pNullVal = &nullVal;
00880                  } 
00881                  ColumnData<unsigned short>& col 
00882                          = dynamic_cast<ColumnData<unsigned short>&>(*this);
00883                  std::vector<unsigned short> __tmp;
00884                  FITSUtil::fill(__tmp,indata,1,indata.size());
00885                  col.writeData(__tmp,firstRow,pNullVal);
00886              }
00887              else if  ( type() == Tuint )
00888              {
00889                  unsigned int nullVal(0);
00890                  unsigned int* pNullVal = 0;
00891                  if (nullValue)
00892                  {
00893                     nullVal = static_cast<unsigned int>(*nullValue);
00894                     pNullVal = &nullVal;
00895                  } 
00896                  ColumnData<unsigned int>& col 
00897                          = dynamic_cast<ColumnData<unsigned int>&>(*this);
00898                  std::vector<unsigned int> __tmp;
00899                  FITSUtil::fill(__tmp,indata,1,indata.size());
00900                  col.writeData(__tmp,firstRow,pNullVal);
00901              }
00902              else if  ( type() == Tulong )
00903              {
00904                  unsigned long nullVal(0);
00905                  unsigned long* pNullVal = 0;
00906                  if (nullValue)
00907                  {
00908                     nullVal = static_cast<unsigned long>(*nullValue); 
00909                     pNullVal = &nullVal;
00910                  }
00911                  ColumnData<unsigned long>& col 
00912                          = dynamic_cast<ColumnData<unsigned long>&>(*this);
00913                  std::vector<unsigned long> __tmp;
00914                  FITSUtil::fill(__tmp,indata,1,indata.size());
00915                  col.writeData(__tmp,firstRow,pNullVal);
00916              } 
00917              else
00918              {
00919                      throw InvalidDataType(name());
00920              }
00921          }
00922       }
00923    }
00924 
00925 
00926    template <typename S>                   
00927    void Column::write (const std::valarray<S>& indata, long firstRow, S* nullValue)
00928    {
00929       // for scalar columns.        
00930       std::vector<S> __tmp;
00931       FITSUtil::fill(__tmp,indata);    
00932       write(__tmp,firstRow,nullValue);          
00933    }
00934 
00935    template <typename S>                   
00936    void Column::write (S* indata, long nRows, long firstRow, S* nullValue)
00937    {
00938       // for scalar columns, data specified with C array
00939       if (nRows <= 0) throw InvalidNumberOfRows(nRows);
00940       std::vector<S> __tmp(nRows);
00941       std::copy(&indata[0],&indata[nRows],__tmp.begin());
00942       write(__tmp,firstRow, nullValue);
00943 
00944    }
00945 
00946    template <typename S>
00947    void Column::write (const std::valarray<S>& indata, const std::vector<long>& vectorLengths,  
00948                            long firstRow)
00949    {
00950       // variable length arrays written from an input valarray.
00951       // does not allow NULL value.
00952 
00953       using namespace std;
00954       const size_t nRows = vectorLengths.size();
00955       // Calculate the sums of the vector lengths first simply to do a 
00956       //   check against the size of indata.
00957       vector<long> sums(nRows+1);
00958       sums[0] = 0;
00959       vector<long>::iterator itSums = sums.begin() + 1;
00960       partial_sum(vectorLengths.begin(), vectorLengths.end(), itSums);
00961       if (indata.size() < static_cast<size_t>(sums[nRows]))
00962       {
00963 #ifdef SSTREAM_DEFECT
00964          ostrstream msgStr;
00965 #else
00966          ostringstream msgStr;
00967 #endif            
00968          msgStr << " input data size: " << indata.size() << " vector length sum: " << sums[nRows];
00969 #ifdef SSTREAM_DEFECT
00970          msgStr << std::ends;
00971 #endif            
00972 
00973          String msg(msgStr.str());
00974          throw Column::InsufficientElements(msg);     
00975       }
00976       vector<valarray<S> > vvArray(nRows);
00977       for (size_t iRow=0; iRow<nRows; ++iRow)
00978       {
00979          valarray<S>& vArray = vvArray[iRow];
00980          long first = sums[iRow];
00981          long last = sums[iRow+1];
00982          vArray.resize(last - first);
00983          for (long iElem=first; iElem<last; ++iElem)
00984          {
00985             vArray[iElem - first] = indata[iElem];
00986          }
00987       }
00988       writeArrays(vvArray, firstRow, static_cast<S*>(0));  
00989    }
00990 
00991 template <typename S>
00992 void Column::write (const std::vector<S>& indata,const std::vector<long>& vectorLengths,
00993                       long firstRow)
00994    {
00995       // variable length write
00996       // implement as valarray version
00997       std::valarray<S> __tmp(indata.size());
00998       std::copy(indata.begin(),indata.end(),&__tmp[0]);
00999       write(__tmp,vectorLengths,firstRow);  
01000 
01001    }
01002 
01003    template <typename S>
01004    void Column::write (S* indata, long nelements, const std::vector<long>& vectorLengths,
01005                                    long firstRow)
01006    {
01007       // implement as valarray version, which will also check array size.
01008       size_t n(vectorLengths.size());
01009       std::valarray<S> __tmp(indata,nelements);
01010       write(__tmp,vectorLengths,firstRow);
01011    }        
01012 
01013    template <typename S>
01014    void Column::write (const std::valarray<S>& indata, long nRows, long firstRow)
01015    {
01016       write(indata,nRows,firstRow,static_cast<S*>(0));
01017    }
01018 
01019    template <typename S>
01020    void Column::write (const std::vector<S>& indata, long nRows, long firstRow)
01021    {
01022       write(indata,nRows,firstRow,static_cast<S*>(0));  
01023    }
01024 
01025    template <typename S>
01026    void Column::write (S* indata, long nelements, long nRows, long firstRow)
01027    {
01028       write(indata,nelements,nRows,firstRow,static_cast<S*>(0));              
01029    }        
01030 
01031 
01032 
01033    template <typename S>
01034    void Column::write (const std::valarray<S>& indata, long nRows, long firstRow,
01035                            S* nullValue)
01036    {
01037       // Write equivalent lengths of data to rows of a vector column.
01038       // The column may be either fixed or variable width, but if it's fixed
01039       // width the lengths must equal the column's repeat value or an
01040       // exception is thrown.
01041       if (nRows <= 0)
01042          throw InvalidNumberOfRows(nRows);
01043       firstRow = std::max(firstRow,static_cast<long>(1));
01044 #ifdef SSTREAM_DEFECT
01045       std::ostrstream msgStr;
01046 #else
01047       std::ostringstream msgStr;
01048 #endif 
01049       const size_t numRows = static_cast<size_t>(nRows);           
01050       if (indata.size() % numRows)
01051       {
01052          msgStr << "To use this write function, input array size"
01053             <<"\n must be exactly divisible by requested num rows: "
01054             << nRows;
01055          throw InsufficientElements(msgStr.str());
01056       }
01057       
01058       const size_t cellsize = indata.size()/numRows;
01059       if (!varLength() && cellsize != repeat() )
01060       {      
01061          msgStr << "column: " << name() 
01062                 <<  "\n input data size: " << indata.size() 
01063                 << " required: " << nRows*repeat();
01064          String msg(msgStr.str());
01065          throw InsufficientElements(msg);     
01066       }
01067       
01068       std::vector<std::valarray<S> > vvArray(numRows);
01069       for (size_t i=0; i<numRows; ++i)
01070       {
01071          vvArray[i].resize(cellsize);
01072          vvArray[i] = indata[std::slice(cellsize*i,cellsize,1)];
01073       }
01074       writeArrays(vvArray, firstRow, nullValue);
01075    }
01076 
01077    template <typename S>
01078    void Column::write (const std::vector<S>& indata, long nRows, long firstRow, S* nullValue)
01079    {
01080       // fixed length write of vector
01081       // implement as valarray version
01082       if (nRows <= 0) throw InvalidNumberOfRows(nRows);
01083       std::valarray<S> __tmp(indata.size());
01084       std::copy(indata.begin(),indata.end(),&__tmp[0]);
01085       write(__tmp,nRows,firstRow, nullValue);  
01086    }
01087 
01088    template <typename S>
01089    void Column::write (S* indata, long nelements, long nRows, long firstRow, S* nullValue)
01090    {
01091       // fixed length write of C-array
01092       // implement as valarray version
01093       if (nRows <= 0) throw InvalidNumberOfRows(nRows);
01094       std::valarray<S> __tmp(indata,nelements);
01095       write(__tmp,nRows,firstRow, nullValue);              
01096    }        
01097 
01098 
01099    template <typename S>
01100    void Column::writeArrays (const std::vector<std::valarray<S> >& indata, long firstRow)
01101    {
01102       // vector<valarray>, no null value. 
01103       writeArrays(indata,firstRow,static_cast<S*>(0));
01104    } 
01105 
01106    template <typename S>
01107    void Column::writeArrays (const std::vector<std::valarray<S> >& indata, long firstRow,
01108                                    S* nullValue)
01109    {
01110       // vector<valarray>, null value. primary
01111 
01112 
01113       using std::valarray;
01114       using std::vector;
01115       parent()->makeThisCurrent();
01116       firstRow = std::max(firstRow,static_cast<long>(1));
01117       if (ColumnVectorData<S>* col = dynamic_cast<ColumnVectorData<S>*>(this))
01118       {
01119           col->writeData(indata,firstRow,nullValue);
01120       }
01121       else
01122       {
01123          // alright, input data type has to be rewritten as output
01124          // data type.
01125          FITSUtil::MatchType<S> inType;
01126          if ( inType() == type()) 
01127          {
01128                  String msg("Incorrect call: writing vectors to scalar column ");
01129                  throw WrongColumnType(msg);
01130          }
01131          else
01132          {
01133              size_t n(indata.size());                            
01134              if  ( type() == Tdouble || type() == VTdouble)
01135              {
01136                  ColumnVectorData<double>& col 
01137                          = dynamic_cast<ColumnVectorData<double>&>(*this);
01138                  vector<valarray<double> > __tmp(n);
01139                  for (size_t i = 0; i < n; ++i)
01140                  {
01141                          FITSUtil::fill(__tmp[i],indata[i]);
01142                  }
01143                  col.writeData(__tmp,firstRow);
01144              }
01145              else if  ( type() == Tfloat || type() == VTfloat)
01146              {
01147                  ColumnVectorData<float>& col 
01148                          = dynamic_cast<ColumnVectorData<float>&>(*this);
01149                  vector<valarray<float> > __tmp(n);
01150                  for (size_t i = 0; i < n; ++i)
01151                  {
01152                          FITSUtil::fill(__tmp[i],indata[i]);
01153                  }                                
01154                  col.writeData(__tmp,firstRow);
01155              }
01156              else if  ( type() == Tint || type() == VTint)
01157              {
01158                  ColumnVectorData<int>& col  
01159                          = dynamic_cast<ColumnVectorData<int>&>(*this);
01160                  vector<valarray<int> > __tmp(n);
01161                  int nullVal(0);
01162                  int* pNullVal = 0;
01163                  if (nullValue)
01164                  {
01165                     nullVal = static_cast<int>(*nullValue);
01166                     pNullVal = &nullVal;
01167                  }
01168                  for (size_t i = 0; i < n; ++i)
01169                  {
01170                          FITSUtil::fill(__tmp[i],indata[i]);
01171                  }                                
01172                  col.writeData(__tmp,firstRow,pNullVal);
01173              }
01174              else if  ( type() == Tshort || type() == VTshort)
01175              {
01176                  ColumnVectorData<short>& col 
01177                          = dynamic_cast<ColumnVectorData<short>&>(*this);
01178                  vector<valarray<short> > __tmp(n);
01179                  short nullVal(0);
01180                  short* pNullVal = 0;
01181                  if (nullValue)
01182                  {
01183                     nullVal = static_cast<short>(*nullValue);
01184                     pNullVal = &nullVal;
01185                  }
01186                  for (size_t i = 0; i < n; ++i)
01187                  {
01188                          FITSUtil::fill(__tmp[i],indata[i]);
01189                  }                                
01190                  col.writeData(__tmp,firstRow,pNullVal);
01191              }
01192              else if  ( type() == Tlong || type() == VTlong)
01193              {
01194                  ColumnVectorData<long>& col 
01195                          = dynamic_cast<ColumnVectorData<long>&>(*this);
01196                  vector<valarray<long> > __tmp(n);
01197                  long nullVal(0);
01198                  long* pNullVal = 0;
01199                  if (nullValue)
01200                  {
01201                     nullVal = static_cast<long>(*nullValue);
01202                     pNullVal = &nullVal;
01203                  }
01204                  for (size_t i = 0; i < n; ++i)
01205                  {
01206                          FITSUtil::fill(__tmp[i],indata[i]);
01207                  }                                
01208                  col.writeData(__tmp,firstRow,pNullVal);
01209              }
01210              else if  ( type() == Tlonglong || type() == VTlonglong)
01211              {
01212                  ColumnVectorData<LONGLONG>& col 
01213                          = dynamic_cast<ColumnVectorData<LONGLONG>&>(*this);
01214                  vector<valarray<LONGLONG> > __tmp(n);
01215                  LONGLONG nullVal(0);
01216                  LONGLONG* pNullVal = 0;
01217                  if (nullValue)
01218                  {
01219                     nullVal = static_cast<LONGLONG>(*nullValue);
01220                     pNullVal = &nullVal;
01221                  }
01222                  for (size_t i = 0; i < n; ++i)
01223                  {
01224                          FITSUtil::fill(__tmp[i],indata[i]);
01225                  }                                
01226                  col.writeData(__tmp,firstRow,pNullVal);
01227              }
01228              else if  ( type() == Tlogical || type() == VTlogical)
01229              {
01230                  ColumnVectorData<bool>& col 
01231                          = dynamic_cast<ColumnVectorData<bool>&>(*this);
01232                  bool nullVal(0);
01233                  bool* pNullVal = 0;
01234                  if (nullValue)
01235                  {
01236                     nullVal = static_cast<bool>(*nullValue);
01237                     pNullVal = &nullVal;
01238                  }
01239                  vector<valarray<bool> > __tmp(n);
01240                  for (size_t i = 0; i < n; ++i)
01241                  {
01242                          FITSUtil::fill(__tmp[i],indata[i]);
01243                  }                                
01244                  col.writeData(__tmp,firstRow,pNullVal);
01245              }
01246              else if  ( type() == Tbyte || type() == VTbyte)
01247              {
01248                  ColumnVectorData<unsigned char>& col 
01249                          = dynamic_cast<ColumnVectorData<unsigned char>&>(*this);
01250                  unsigned char nullVal(0);
01251                  unsigned char* pNullVal = 0;
01252                  if (nullValue)
01253                  {
01254                     nullVal = static_cast<unsigned char>(*nullValue);
01255                     pNullVal = &nullVal;
01256                  }
01257                  vector<valarray<unsigned char> > __tmp(n);
01258                  for (size_t i = 0; i < n; ++i)
01259                  {
01260                          FITSUtil::fill(__tmp[i],indata[i]);
01261                  }                                                                
01262                  col.writeData(__tmp,firstRow,&nullVal);
01263              }                            
01264              else if  ( type() == Tushort || type() == VTushort)
01265              {
01266                  ColumnVectorData<unsigned short>& col 
01267                          = dynamic_cast<ColumnVectorData<unsigned short>&>(*this);
01268                  unsigned short nullVal(0);
01269                  unsigned short* pNullVal = 0;
01270                  if (nullValue)
01271                  {
01272                     nullVal = static_cast<unsigned short>(*nullValue);
01273                     pNullVal = &nullVal;
01274                  }
01275                  vector<valarray<unsigned short> > __tmp(n);
01276                  for (size_t i = 0; i < n; ++i)
01277                  {
01278                          FITSUtil::fill(__tmp[i],indata[i]);
01279                  }                                
01280                  col.writeData(__tmp,firstRow,pNullVal);
01281              }
01282              else if  ( type() == Tuint || type() == VTuint)
01283              {
01284                  ColumnVectorData<unsigned int>& col 
01285                          = dynamic_cast<ColumnVectorData<unsigned int>&>(*this);
01286                  unsigned int nullVal(0);
01287                  unsigned int* pNullVal = 0;
01288                  if (nullValue)
01289                  {
01290                     nullVal = static_cast<unsigned int>(*nullValue);
01291                     pNullVal = &nullVal;
01292                  }
01293                  vector<valarray<unsigned int> > __tmp(n);
01294                  for (size_t i = 0; i < n; ++i)
01295                  {
01296                          FITSUtil::fill(__tmp[i],indata[i]);
01297                  }                                
01298                  col.writeData(__tmp,firstRow,pNullVal);
01299              }
01300              else if  ( type() == Tulong || type() == VTulong)
01301              {
01302                  ColumnVectorData<unsigned long>& col 
01303                          = dynamic_cast<ColumnVectorData<unsigned long>&>(*this);
01304                  unsigned long nullVal(0);
01305                  unsigned long* pNullVal = 0;
01306                  if (nullValue)
01307                  {
01308                     nullVal = static_cast<unsigned long>(*nullValue);
01309                     pNullVal = &nullVal;
01310                  }
01311                  vector<valarray<unsigned long> > __tmp(n);
01312                  for (size_t i = 0; i < n; ++i)
01313                  {
01314                          FITSUtil::fill(__tmp[i],indata[i]);
01315                  }                                
01316                  col.writeData(__tmp,firstRow,pNullVal);
01317              } 
01318              else
01319              {
01320                      throw InvalidDataType(name());
01321              }
01322          }
01323       }
01324    } 
01325 
01326 
01327    template <typename T>
01328    void Column::addNullValue(T nullVal)
01329    {
01330       parent()->makeThisCurrent();
01331       int status(0);
01332 #ifdef SSTREAM_DEFECT
01333       std::ostrstream keyName;
01334       keyName << "TNULL" << index() << std::ends;
01335       char* nullKey = const_cast<char*>(keyName.str());
01336 #else
01337       std::ostringstream keyName;          
01338       keyName << "TNULL" << index();
01339       String keyNameStr = keyName.str();
01340       char* nullKey = const_cast<char*>(keyNameStr.c_str());
01341 #endif
01342 
01343 
01344       FITSUtil::MatchType<T> inputType;
01345       int dataType = static_cast<int>(inputType());
01346       if (dataType == static_cast<int>(Tstring))
01347          throw InvalidDataType("attempting to set TNULLn to a string.");
01348 
01349       // update key but don't add to keyword list because it's really a column
01350       // property not a table metadata property. And it needs to be automatically
01351       // renumbered if columns are inserted or deleted.
01352       if (fits_update_key(fitsPointer(),dataType,nullKey,&nullVal,0,&status))
01353               throw FitsError(status);
01354 
01355       // The following is called to make sure the HDU struct is immediately 
01356       // updated in case a column write operation is performed shortly after this
01357       // function exits. 
01358       if (fits_set_hdustruc(fitsPointer(),&status)) throw FitsError(status); 
01359 
01360    }
01361 
01362    template <typename T>
01363    bool Column::getNullValue(T* nullVal) const
01364    {
01365       parent()->makeThisCurrent();
01366 #ifdef SSTREAM_DEFECT
01367       std::ostrstream keyName;
01368       keyName << "TNULL" << index() << std::ends;
01369       char* nullKey = const_cast<char*>(keyName.str());
01370 #else
01371       std::ostringstream keyName;          
01372       keyName << "TNULL" << index();
01373       String keyNameStr = keyName.str();
01374       char* nullKey = const_cast<char*>(keyNameStr.c_str());
01375 #endif
01376 
01377       int status=0;
01378       FITSUtil::MatchType<T> inputType;
01379       int dataType = static_cast<int>(inputType());
01380       if (dataType == static_cast<int>(Tstring))
01381          throw InvalidDataType("attempting to read TNULLn into a string.");
01382       T tmpVal(*nullVal);
01383 
01384       bool keyExists = false;
01385       if (fits_read_key(m_parent->fitsPointer(), dataType, nullKey, &tmpVal, 0, &status))
01386       {
01387          if (status == KEY_NO_EXIST  || status == VALUE_UNDEFINED)
01388             return keyExists;
01389          else
01390             throw FitsError(status);
01391       }
01392       keyExists = true;
01393       *nullVal = tmpVal;       
01394       return keyExists;
01395    }
01396 
01397 } // namespace CCfits
01398 
01399 #endif
Generated on Tue Dec 6 2011 16:12:51 for CCfits by   doxygen 1.7.5.1
CCfits/html/ColumnVectorData_8h_source.html0000644000225700000360000034413011667502523020556 0ustar cagordonlhea CCfits: ColumnVectorData.h Source File
CCfits  2.4
ColumnVectorData.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef COLUMNVECTORDATA_H
00010 #define COLUMNVECTORDATA_H 1
00011 #ifdef _MSC_VER
00012 #include "MSconfig.h"
00013 #endif
00014 #include "CCfits.h"
00015 
00016 // valarray
00017 #include <valarray>
00018 // vector
00019 #include <vector>
00020 // Column
00021 #include "Column.h"
00022 #ifdef HAVE_CONFIG_H
00023 #include "config.h"
00024 #endif
00025 
00026 #ifdef SSTREAM_DEFECT
00027 #include <strstream>
00028 #else
00029 #include <sstream>
00030 #endif
00031 
00032 #include <memory>
00033 #include <numeric>
00034 namespace CCfits {
00035 
00036         class Table;
00037 
00038 }
00039 
00040 #include "FITS.h"
00041 #include "FITSUtil.h"
00042 using std::complex;
00043 
00044 
00045 namespace CCfits {
00046 
00047 
00048 
00049   template <typename T>
00050   class ColumnVectorData : public Column  //## Inherits: <unnamed>%38BAD1D4D370
00051   {
00052 
00053     public:
00054         ColumnVectorData(const ColumnVectorData< T > &right);
00055         ColumnVectorData (Table* p = 0);
00056         ColumnVectorData (int columnIndex, const string &columnName, ValueType type, const string &format, const string &unit, Table* p, int  rpt = 1, long w = 1, const string &comment = "");
00057         ~ColumnVectorData();
00058 
00059         virtual void readData (long firstrow, long nelements, long firstelem = 1);
00060         virtual ColumnVectorData<T>* clone () const;
00061         virtual void setDimen ();
00062         void setDataLimits (T* limits);
00063         const T minLegalValue () const;
00064         void minLegalValue (T value);
00065         const T maxLegalValue () const;
00066         void maxLegalValue (T value);
00067         const T minDataValue () const;
00068         void minDataValue (T value);
00069         const T maxDataValue () const;
00070         void maxDataValue (T value);
00071         const std::vector<std::valarray<T> >& data () const;
00072         void setData (const std::vector<std::valarray<T> >& value);
00073         const std::valarray<T>& data (int i) const;
00074         void data (int i, const std::valarray<T>& value);
00075 
00076       // Additional Public Declarations
00077         friend class Column;
00078     protected:
00079       // Additional Protected Declarations
00080 
00081     private:
00082         ColumnVectorData< T > & operator=(const ColumnVectorData< T > &right);
00083 
00084         virtual bool compare (const Column &right) const;
00085         void resizeDataObject (const std::vector<std::valarray<T> >& indata, size_t firstRow);
00086         //      Reads a specified number of column rows.
00087         //
00088         //      There are no default arguments. The function
00089         //      Column::read(firstrow,firstelem,nelements)
00090         //       is designed for reading the whole column.
00091         virtual void readColumnData (long first, long last, T* nullValue = 0);
00092         virtual std::ostream& put (std::ostream& s) const;
00093         void writeData (const std::valarray<T>& indata, long numRows, long firstRow = 1, T* nullValue = 0);
00094         void writeData (const std::vector<std::valarray<T> >& indata, long firstRow = 1, T* nullValue = 0);
00095         //      Reads a specified number of column rows.
00096         //
00097         //      There are no default arguments. The function
00098         //      Column::read(firstrow,firstelem,nelements)
00099         //       is designed for reading the whole column.
00100         virtual void readRow (size_t row, T* nullValue = 0);
00101         //      Reads a variable row..
00102         virtual void readVariableRow (size_t row, T* nullValue = 0);
00103         void readColumnData (long firstrow, long nelements, long firstelem, T* nullValue = 0);
00104         void writeData (const std::valarray<T>& indata, const std::vector<long>& vectorLengths, long firstRow = 1, T* nullValue = 0);
00105         void writeFixedRow (const std::valarray<T>& data, long row, long firstElem = 1, T* nullValue = 0);
00106         void writeFixedArray (T* data, long nElements, long nRows, long firstRow, T* nullValue = 0);
00107         //      Insert one or more blank rows into a FITS column.
00108         virtual void insertRows (long first, long number = 1);
00109         virtual void deleteRows (long first, long number = 1);
00110         void doWrite (T* array, long row, long rowSize, long firstElem, T* nullValue);
00111 
00112       // Additional Private Declarations
00113 
00114     private: //## implementation
00115       // Data Members for Class Attributes
00116         T m_minLegalValue;
00117         T m_maxLegalValue;
00118         T m_minDataValue;
00119         T m_maxDataValue;
00120 
00121       // Data Members for Associations
00122         std::vector<std::valarray<T> > m_data;
00123 
00124       // Additional Implementation Declarations
00125 
00126   };
00127 
00128   // Parameterized Class CCfits::ColumnVectorData 
00129 
00130   template <typename T>
00131   inline void ColumnVectorData<T>::readData (long firstrow, long nelements, long firstelem)
00132   {
00133     readColumnData(firstrow,nelements,firstelem,static_cast<T*>(0));
00134   }
00135 
00136   template <typename T>
00137   inline const T ColumnVectorData<T>::minLegalValue () const
00138   {
00139     return m_minLegalValue;
00140   }
00141 
00142   template <typename T>
00143   inline void ColumnVectorData<T>::minLegalValue (T value)
00144   {
00145     m_minLegalValue = value;
00146   }
00147 
00148   template <typename T>
00149   inline const T ColumnVectorData<T>::maxLegalValue () const
00150   {
00151     return m_maxLegalValue;
00152   }
00153 
00154   template <typename T>
00155   inline void ColumnVectorData<T>::maxLegalValue (T value)
00156   {
00157     m_maxLegalValue = value;
00158   }
00159 
00160   template <typename T>
00161   inline const T ColumnVectorData<T>::minDataValue () const
00162   {
00163     return m_minDataValue;
00164   }
00165 
00166   template <typename T>
00167   inline void ColumnVectorData<T>::minDataValue (T value)
00168   {
00169     m_minDataValue = value;
00170   }
00171 
00172   template <typename T>
00173   inline const T ColumnVectorData<T>::maxDataValue () const
00174   {
00175     return m_maxDataValue;
00176   }
00177 
00178   template <typename T>
00179   inline void ColumnVectorData<T>::maxDataValue (T value)
00180   {
00181     m_maxDataValue = value;
00182   }
00183 
00184   template <typename T>
00185   inline const std::vector<std::valarray<T> >& ColumnVectorData<T>::data () const
00186   {
00187     return m_data;
00188   }
00189 
00190   template <typename T>
00191   inline void ColumnVectorData<T>::setData (const std::vector<std::valarray<T> >& value)
00192   {
00193     m_data = value;
00194   }
00195 
00196   template <typename T>
00197   inline const std::valarray<T>& ColumnVectorData<T>::data (int i) const
00198   {
00199     return m_data[i - 1];
00200   }
00201 
00202   template <typename T>
00203   inline void ColumnVectorData<T>::data (int i, const std::valarray<T>& value)
00204   {
00205      if (m_data[i-1].size() != value.size())
00206         m_data[i-1].resize(value.size());
00207      m_data[i - 1] = value;
00208   }
00209 
00210   // Parameterized Class CCfits::ColumnVectorData 
00211 
00212   template <typename T>
00213   ColumnVectorData<T>::ColumnVectorData(const ColumnVectorData<T> &right)
00214       :Column(right),
00215        m_minLegalValue(right.m_minLegalValue),
00216        m_maxLegalValue(right.m_maxLegalValue),
00217        m_minDataValue(right.m_minDataValue),
00218        m_maxDataValue(right.m_maxDataValue),
00219        m_data(right.m_data)
00220   {
00221   }
00222 
00223   template <typename T>
00224   ColumnVectorData<T>::ColumnVectorData (Table* p)
00225     : Column(p),
00226        m_minLegalValue(0),
00227        m_maxLegalValue(0),
00228        m_minDataValue(0),
00229        m_maxDataValue(0),
00230        m_data() 
00231   {
00232   }
00233 
00234   template <typename T>
00235   ColumnVectorData<T>::ColumnVectorData (int columnIndex, const string &columnName, ValueType type, const string &format, const string &unit, Table* p, int  rpt, long w, const string &comment)
00236         : Column(columnIndex,columnName,type,format,unit,p,rpt,w,comment),
00237           m_minLegalValue(0),
00238           m_maxLegalValue(0),
00239           m_minDataValue(0),
00240           m_maxDataValue(0), 
00241           m_data()
00242   {
00243   }
00244 
00245 
00246   template <typename T>
00247   ColumnVectorData<T>::~ColumnVectorData()
00248   {
00249   // valarray destructor should do all the work.
00250   }
00251 
00252 
00253   template <typename T>
00254   bool ColumnVectorData<T>::compare (const Column &right) const
00255   {
00256           if ( !Column::compare(right) ) return false;
00257           const ColumnVectorData<T>& that = static_cast<const ColumnVectorData<T>&>(right);
00258           size_t n = m_data.size();
00259           // m_data is of type valarray<T>.
00260           if ( that.m_data.size() != n ) return false;
00261           for (size_t i = 0; i < n ; i++)
00262           {
00263                 size_t nn = m_data[i].size();
00264                 // first check size (also, == on 2 valarrays is only defined if they
00265                 // are equal in size).
00266                 if (that.m_data[i].size() != nn ) return false;
00267 
00268                 std::valarray<bool> test = (m_data[i] == that.m_data[i]);
00269                 for (size_t j = 0; j < nn ; j++ ) if ( !test[j] ) return false;
00270           }
00271           return true;
00272   }
00273 
00274   template <typename T>
00275   ColumnVectorData<T>* ColumnVectorData<T>::clone () const
00276   {
00277   return new ColumnVectorData<T>(*this);
00278   }
00279 
00280   template <typename T>
00281   void ColumnVectorData<T>::resizeDataObject (const std::vector<std::valarray<T> >& indata, size_t firstRow)
00282   {
00283     // the rows() call is the value before updating.
00284     // the updateRows() call at the end sets the call to return the
00285     // value from the fits pointer - which is changed by writeFixedArray
00286     // or writeFixedRow.
00287 
00288     const size_t lastInputRow(indata.size() + firstRow - 1);
00289     const size_t newLastRow = std::max(lastInputRow,static_cast<size_t>(rows()));
00290 
00291     // if the write instruction increases the rows, we need to add
00292     // rows to the data member and preserve its current contents.
00293 
00294     // rows() >= origNRows since it is the value for entire table, 
00295     // not just this column.
00296     const size_t origNRows(m_data.size());
00297     // This will always be an expansion. vector.resize() doesn't
00298     // invalidate any data on an expansion.
00299     if (newLastRow > origNRows) m_data.resize(newLastRow);
00300 
00301     if (varLength())
00302     {
00303        // The incoming data will determine each row size, thus
00304        // no need to preserve any existing values in the row.
00305        // Each value will eventually be overwritten.
00306        for (size_t iRow = firstRow-1; iRow < lastInputRow; ++iRow)
00307        {
00308           std::valarray<T>& current = m_data[iRow];
00309           const size_t newSize = indata[iRow - (firstRow-1)].size();
00310           if (current.size() != newSize)
00311              current.resize(newSize);          
00312        }
00313     }
00314     else
00315     {
00316        // All row sizes in m_data should ALWAYS be either repeat(),
00317        // or 0 if they haven't been initialized.  This is true regardless
00318        // of the incoming data row size.  
00319 
00320        // Perform LAZY initialization of m_data rows.  Only
00321        // expand a row valarray when it is first needed.
00322        for (size_t iRow = firstRow-1; iRow < lastInputRow; ++iRow)
00323        {
00324           if (m_data[iRow].size() != repeat())
00325              m_data[iRow].resize(repeat());
00326        }       
00327     }
00328   }
00329 
00330   template <typename T>
00331   void ColumnVectorData<T>::setDimen ()
00332   {
00333   int status(0);
00334   FITSUtil:: auto_array_ptr<char> dimValue (new char[FLEN_VALUE]);
00335 
00336 #ifdef SSTREAM_DEFECT
00337   std::ostrstream key;
00338 #else
00339   std::ostringstream key;
00340 #endif
00341   key << "TDIM" << index();
00342 
00343 #ifdef SSTREAM_DEFECT
00344   fits_read_key_str(fitsPointer(), key.str(), dimValue.get(),0,&status);
00345 #else
00346   fits_read_key_str(fitsPointer(),const_cast<char*>(key.str().c_str()),dimValue.get(),0,&status);
00347 #endif
00348 
00349   if (status == 0)
00350   {
00351         dimen(String(dimValue.get()));
00352   }
00353   }
00354 
00355   template <typename T>
00356   void ColumnVectorData<T>::readColumnData (long first, long last, T* nullValue)
00357   {
00358   makeHDUCurrent();
00359 
00360 
00361           if ( rows() < last ) 
00362           {
00363                 std::cerr << "CCfits: More data requested than contained in table. ";
00364                 std::cerr << "Extracting complete column.\n";
00365                 last = rows();
00366           }
00367 
00368           long nelements = (last - first + 1)*repeat();
00369 
00370 
00371           readColumnData(first,nelements,1,nullValue);   
00372           if (first <= 1 && last == rows()) isRead(true);
00373   }
00374 
00375   template <typename T>
00376   std::ostream& ColumnVectorData<T>::put (std::ostream& s) const
00377   {
00378   // output header information
00379     Column::put(s);
00380     if ( FITS::verboseMode() )
00381     {
00382           s << " Column Legal limits: ( " << m_minLegalValue << "," << m_maxLegalValue << " )\n" 
00383           << " Column Data  limits: ( " << m_minDataValue << "," << m_maxDataValue << " )\n";
00384     }
00385     if (!m_data.empty())
00386     {
00387           for (size_t j = 0; j < m_data.size(); j++)
00388           {
00389                   size_t n = m_data[j].size();
00390                   if ( n )
00391                   {
00392                           s << "Row " << j + 1 << " Vector Size " << n << '\n';
00393                           for (size_t k = 0; k < n - 1; k++)
00394                           {
00395                                   s << m_data[j][k] << '\t';
00396                           }
00397                           s << m_data[j][n - 1] << '\n';
00398                   }
00399           }
00400     }
00401 
00402     return s;
00403   }
00404 
00405   template <typename T>
00406   void ColumnVectorData<T>::writeData (const std::valarray<T>& indata, long numRows, long firstRow, T* nullValue)
00407   {
00408      // This version of writeData is called by Column write functions which 
00409      // can only write the same number of elements to each row.  
00410      // For fixed width columns, this must be equal to the repeat value
00411      // or an exception is thrown.  For variable width, it only requires
00412      // that indata.size()/numRows is an int.
00413 
00414      // won't do anything if < 0, and will give divide check if == 0.
00415      if (numRows <= 0) throw InvalidNumberOfRows(numRows);
00416 
00417 #ifdef SSTREAM_DEFECT
00418      std::ostrstream msgStr;
00419 #else
00420      std::ostringstream msgStr;
00421 #endif            
00422      if (indata.size() % static_cast<size_t>(numRows))
00423      {
00424         msgStr << "To use this write function, input array size"
00425            <<"\n must be exactly divisible by requested num rows: "
00426            << numRows;
00427         throw InsufficientElements(msgStr.str());
00428      }
00429      const size_t cellsize = indata.size()/static_cast<size_t>(numRows);
00430 
00431      if (!varLength() && cellsize != repeat() )
00432      {      
00433         msgStr << "column: " << name() 
00434                <<  "\n input data size: " << indata.size() 
00435                << " required: " << numRows*repeat();
00436         String msg(msgStr.str());
00437         throw InsufficientElements(msg);     
00438      }
00439 
00440      std::vector<std::valarray<T> > internalFormat(numRows);
00441 
00442      // support writing equal row lengths to variable columns.
00443 
00444      for (long j = 0; j < numRows; ++j)
00445      {
00446         internalFormat[j].resize(cellsize);
00447         internalFormat[j] = indata[std::slice(cellsize*j,cellsize,1)];
00448      }
00449 
00450      // change the size of m_data based on the first row to be written
00451      // and on the input data vector sizes.
00452 
00453      writeData(internalFormat,firstRow,nullValue);    
00454   }
00455 
00456   template <typename T>
00457   void ColumnVectorData<T>::writeData (const std::vector<std::valarray<T> >& indata, long firstRow, T* nullValue)
00458   {
00459      // This is called directly by Column's writeArrays functions, and indirectly
00460      // by both categories of write functions, ie. those which allow differing
00461      // lengths per row and those that don't.
00462     const size_t nInputRows(indata.size());   
00463     using  std::valarray;
00464 
00465     resizeDataObject(indata,firstRow); 
00466     // After the above call, can assume all m_data arrays to be written to 
00467     // have been properly resized whether we're dealing with fixed or
00468     // variable length.       
00469 
00470     if (varLength())
00471     {
00472        // firstRow is 1-based, but all these internal row variables 
00473        // will be 0-based.  
00474        const size_t endRow = nInputRows + firstRow-1;
00475        for (size_t iRow = firstRow-1; iRow < endRow; ++iRow)
00476        {
00477           m_data[iRow] = indata[iRow - (firstRow-1)];
00478           // doWrite wants 1-based rows.
00479           doWrite(&m_data[iRow][0], iRow+1, m_data[iRow].size(), 1, nullValue);
00480        }
00481        parent()->updateRows();
00482     }
00483     else
00484     {
00485        // Check for simplest case of all valarrays of size repeat().
00486        // If any are greater, throw an error.
00487        const size_t colRepeat = repeat();
00488        bool allEqualRepeat = true;
00489        for (size_t i=0; i<nInputRows; ++i)
00490        {
00491           const size_t sz = indata[i].size();
00492           if (sz > colRepeat)
00493           {
00494 #ifdef SSTREAM_DEFECT
00495              std::ostrstream oss;
00496 #else
00497              std::ostringstream oss;
00498 #endif 
00499              oss << " vector column length " << colRepeat 
00500                 <<", input valarray length " << sz;
00501              throw InvalidRowParameter(oss.str());               
00502           }
00503           if (sz < colRepeat)
00504              allEqualRepeat = false;
00505        }
00506 
00507        if (allEqualRepeat)
00508        {
00509           // concatenate the valarrays and write.
00510           const size_t nElements (colRepeat*nInputRows);
00511           FITSUtil::CVAarray<T> convert;
00512           FITSUtil::auto_array_ptr<T> pArray(convert(indata));
00513           T* array = pArray.get();
00514 
00515           // if T is complex, then CVAarray returns a 
00516           // C-array of complex objects. But FITS requires an array of complex's
00517           // value_type.
00518 
00519           // This writes to the file and also calls updateRows.
00520           writeFixedArray(array,nElements,nInputRows,firstRow,nullValue);            
00521 
00522           for (size_t j = 0; j < nInputRows ; ++j)
00523           {
00524               const valarray<T>& input   = indata[j];
00525               valarray<T>& current = m_data[j + firstRow - 1];
00526               // current should be resized by resizeDataObject.
00527               current = input;
00528           }
00529        }
00530        else
00531        {
00532           // Some input arrays have fewer than colRepeat elements. 
00533           const size_t endRow = nInputRows + firstRow-1;
00534           for (size_t iRow = firstRow-1; iRow<endRow; ++iRow)
00535           {
00536              // resizeDataObject should already have resized all
00537              // corresponding m_data rows to repeat().
00538              const valarray<T>& input = indata[iRow-(firstRow-1)];
00539              writeFixedRow(input, iRow, 1, nullValue);
00540           }
00541           parent()->updateRows();          
00542        }  
00543 
00544     } // end if !varLength
00545   }
00546 
00547   template <typename T>
00548   void ColumnVectorData<T>::readRow (size_t row, T* nullValue)
00549   {
00550           makeHDUCurrent();
00551 
00552 
00553 
00554           if ( row > static_cast<size_t>(rows()) ) 
00555           {
00556 #ifdef SSTREAM_DEFECT
00557                   std::ostrstream msg;
00558 #else
00559                   std::ostringstream msg;
00560 #endif
00561                 msg << " row requested: " << row << " row range: 1 - " << rows();                
00562 #ifdef SSTREAM_DEFECT
00563                 msg << std::ends;
00564 #endif
00565 
00566                 throw Column::InvalidRowNumber(msg.str()); 
00567           }
00568 
00569           // this is really for documentation purposes. I expect the optimizer will
00570           // remove this redundant definition .
00571           bool variable(type() < 0); 
00572 
00573 
00574           long nelements(repeat());
00575 
00576           if (variable)
00577           {
00578               readVariableRow(row,nullValue);
00579           }
00580           else
00581           {      
00582               readColumnData(row,nelements,1,nullValue);      
00583           }
00584   }
00585 
00586   template <typename T>
00587   void ColumnVectorData<T>::readVariableRow (size_t row, T* nullValue)
00588   {
00589       int status(0);
00590       long offset(0);
00591       long repeat(0);
00592       if (fits_read_descript(fitsPointer(),index(),static_cast<long>(row),
00593                       &repeat,&offset,&status)) throw FitsError(status);
00594       readColumnData(row,repeat,1,nullValue);   
00595   }
00596 
00597   template <typename T>
00598   void ColumnVectorData<T>::readColumnData (long firstrow, long nelements, long firstelem, T* nullValue)
00599   {
00600    int   status=0;
00601 
00602    FITSUtil::auto_array_ptr<T> pArray(new T[nelements]); 
00603    T*     array = pArray.get();
00604    int    anynul(0);
00605 
00606 
00607 
00608    if (fits_read_col(fitsPointer(), abs(type()),index(), firstrow, firstelem,
00609                           nelements, nullValue, array, &anynul, &status) != 0)  
00610        throw FitsError(status);
00611 
00612    size_t countRead = 0;
00613    const size_t ONE = 1;
00614 
00615    if (m_data.size() != static_cast<size_t>(rows())) m_data.resize(rows());
00616    size_t vectorSize(0);
00617    if (!varLength())
00618    {
00619 
00620         vectorSize = std::max(repeat(),ONE); // safety check.
00621 
00622    }
00623    else
00624    {
00625         // assume that the user specified the correct length for 
00626         // variable columns. This should be ok since readVariableColumns
00627         // uses fits_read_descripts to return this information from the
00628         // fits pointer, and this is passed as nelements here.
00629         vectorSize = nelements;       
00630    }
00631    size_t n = nelements; 
00632 
00633    int i = firstrow;
00634    int ii = i - 1;
00635    while ( countRead < n)
00636    {
00637          std::valarray<T>& current = m_data[ii];
00638          if (current.size() != vectorSize) current.resize(vectorSize);
00639          int elementsInFirstRow = vectorSize-firstelem + 1;
00640          bool lastRow = ( (nelements - countRead) < vectorSize);
00641          if (lastRow)
00642          {
00643                int elementsInLastRow = nelements - countRead;
00644                std::valarray<T> ttmp(array + vectorSize*(ii-firstrow) + elementsInFirstRow,
00645                                                      elementsInLastRow);
00646                for (int kk = 0; kk < elementsInLastRow; kk++) current[kk] = ttmp[kk];
00647                countRead += elementsInLastRow;
00648 
00649          }
00650          // what to do with complete rows
00651          else 
00652          {
00653                 if (firstelem == 1 || (firstelem > 1 && i > firstrow) )
00654                 {
00655                         std::valarray<T> ttmp(array + vectorSize*(ii - firstrow) + 
00656                                         elementsInFirstRow,vectorSize);
00657                         current = ttmp;
00658                         ii++;
00659                         i++;
00660                         countRead += vectorSize;   
00661                 }   
00662                 else
00663                 { 
00664                         if (i == firstrow)
00665                         {
00666                                 std::valarray<T> ttmp(array,elementsInFirstRow);
00667                                 for (size_t kk = firstelem ; kk < vectorSize ; kk++)
00668                                       current[kk] = ttmp[kk-firstelem];   
00669                                 countRead += elementsInFirstRow;
00670                                 i++;
00671                                 ii++;
00672                         }
00673                 }
00674          }
00675     }
00676   }
00677 
00678   template <typename T>
00679   void ColumnVectorData<T>::writeData (const std::valarray<T>& indata, const std::vector<long>& vectorLengths, long firstRow, T* nullValue)
00680   {
00681      // Called from Column write functions which allow differing lengths
00682      // for each row.
00683     using namespace std;
00684     const size_t N(vectorLengths.size());
00685     vector<long> sums(N);
00686     // pre-calculate partial sums of vector lengths for use as array offsets.
00687     partial_sum(vectorLengths.begin(),vectorLengths.end(),sums.begin());
00688     // check that sufficient data have been supplied to carry out the entire operation.
00689     if (indata.size() < static_cast<size_t>(sums[N-1]) )
00690     {
00691 #ifdef SSTREAM_DEFECT
00692         ostrstream msgStr;
00693 #else
00694         ostringstream msgStr;
00695 #endif            
00696         msgStr << " input data size: " << indata.size() << " vector length sum: " << sums[N-1];
00697 #ifdef SSTREAM_DEFECT
00698         msgStr << std::ends;
00699 #endif            
00700 
00701         String msg(msgStr.str());
00702         throw InsufficientElements(msg);     
00703     }
00704 
00705     vector<valarray<T> > vvArray(N);
00706     long& last = sums[0];
00707     vvArray[0].resize(last);
00708     for (long jj = 0; jj < last; ++jj) vvArray[0][jj] = indata[jj];
00709 
00710     for (size_t j = 1; j < N; ++j)
00711     {
00712                valarray<T>& __tmp = vvArray[j];
00713                // these  make the code much more readable
00714                long& first = sums[j-1];
00715                long& jlast = sums[j];
00716                __tmp.resize(jlast - first);
00717                for (long k = first; k < jlast; ++k)
00718                { 
00719                         __tmp[k - first] = indata[k];
00720                }
00721     }       
00722 
00723     writeData(vvArray,firstRow,nullValue);
00724   }
00725 
00726   template <typename T>
00727   void ColumnVectorData<T>::writeFixedRow (const std::valarray<T>& data, long row, long firstElem, T* nullValue)
00728   {
00729 
00730     // This is to be called only for FIXED length vector columns.  It will 
00731     // throw if data.size()+firstElem goes beyond the repeat value.
00732     // If data.size() is less than repeat, it leaves the remaining values
00733     // undisturbed both in the file and in m_data storage.
00734 
00735 #ifdef SSTREAM_DEFECT
00736     std::ostrstream msgStr;
00737 #else
00738     std::ostringstream msgStr;
00739 #endif            
00740     if (varLength())
00741     {
00742        msgStr <<"Calling ColumnVectorData::writeFixedRow for a variable length column.\n";
00743        throw FitsFatal(msgStr.str()); 
00744     }
00745 
00746     std::valarray<T>& storedRow = m_data[row];    
00747     long inputSize = static_cast<long>(data.size());
00748     long storedSize(storedRow.size());
00749     if (storedSize != static_cast<long>(repeat()))
00750     {
00751        msgStr<<"stored array size vs. column width mismatch in ColumnVectorData::writeFixedRow.\n";
00752        throw FitsFatal(msgStr.str());
00753     }
00754 
00755     if (inputSize + firstElem - 1 > storedSize)
00756     { 
00757           msgStr << " requested write " << firstElem << " to " 
00758                  << firstElem  + inputSize - 1 << " exceeds vector length " << repeat();
00759        throw InvalidRowParameter(msgStr.str());        
00760     }
00761 
00762     // CANNOT give a strong exception safety guarantee because writing
00763     // data changes the file. Any corrective action that could be taken
00764     // [e.g. holding initial contents of the row and writing it back after
00765     // an exception is thrown] could in principle throw the same exception
00766     // we are trying to protect from.
00767 
00768     // routine does however give the weak guarantee (no resource leaks).    
00769 
00770     // It's never a good thing to cast away a const, but doWrite calls the 
00771     // CFITSIO write functions which take a non-const pointer (though
00772     // it shouldn't actually modify the array), and I'd rather not 
00773     // copy the entire valarray just to avoid this problem.
00774     std::valarray<T>& lvData = const_cast<std::valarray<T>&>(data);
00775     T* inPointer = &lvData[0];
00776     doWrite(inPointer, row+1, inputSize, firstElem, nullValue); 
00777 
00778     // Writing to disk was successful, now update FITS object and return.
00779     const size_t offset = static_cast<size_t>(firstElem) - 1;
00780     for (size_t iElem=0; iElem < static_cast<size_t>(inputSize); ++iElem)
00781     {
00782        // This doesn't require inPointer's non-constness.  It's just
00783        // used here to speed things up a bit.
00784        storedRow[iElem + offset] = inPointer[iElem];
00785     }
00786   }
00787 
00788   template <typename T>
00789   void ColumnVectorData<T>::writeFixedArray (T* data, long nElements, long nRows, long firstRow, T* nullValue)
00790   {
00791     int status(0);
00792 
00793     // check for sanity of inputs, then write to file.
00794     // this function writes only complete rows to a table with
00795     // fixed width rows.
00796 
00797 
00798     if ( nElements < nRows*static_cast<long>(repeat()) )
00799     {
00800 #ifdef SSTREAM_DEFECT
00801         std::ostrstream msgStr;
00802 #else
00803         std::ostringstream msgStr;
00804 #endif
00805         msgStr << " input array size: " << nElements << " required " << nRows*repeat();
00806         String msg(msgStr.str());
00807 
00808             throw Column::InsufficientElements(msg);
00809     } 
00810 
00811     if (nullValue) 
00812     {
00813        if (fits_write_colnull(fitsPointer(),abs(type()),index(),firstRow,
00814                            1,nElements,data,nullValue,&status)) throw FitsError(status);
00815     }
00816     else
00817     {
00818        if (fits_write_col(fitsPointer(),abs(type()),index(),firstRow,
00819                            1,nElements,data,&status)) throw FitsError(status);
00820     }
00821 
00822     parent()->updateRows();
00823   }
00824 
00825   template <typename T>
00826   void ColumnVectorData<T>::insertRows (long first, long number)
00827   {
00828     typename std::vector<std::valarray<T> >::iterator in;
00829     if (first !=0) 
00830     {
00831             in = m_data.begin()+first;
00832     }
00833     else
00834     {
00835             in = m_data.begin();
00836     }           
00837 
00838     // non-throwing operations.
00839     m_data.insert(in,number,std::valarray<T>(T(),0));
00840   }
00841 
00842   template <typename T>
00843   void ColumnVectorData<T>::deleteRows (long first, long number)
00844   {
00845     // the following is an ugly workaround for a bug in g++ v3.0 that
00846     // does not erase vector elements cleanly in this case.
00847 
00848     long N = static_cast<long>(m_data.size());
00849     size_t newSize = static_cast<size_t>(N - number);      
00850     std::vector<std::valarray<T> > __tmp(newSize);
00851 
00852     long lastDeleted( number + first - 1 );
00853     long firstDeleted(first);
00854     long count(0);
00855     {
00856        for (long j = 1; j <= N; ++j)
00857        {
00858           if (  (j - firstDeleted)*(lastDeleted - j) >= 0 )     
00859           {                ++count; 
00860           } 
00861           else
00862           {
00863              __tmp[j - 1 - count].resize(m_data[j - 1].size());
00864              __tmp[j - 1 - count] = m_data[j - 1];
00865           }
00866        }                           
00867     }
00868 
00869     m_data.clear();
00870     m_data.resize(newSize);
00871     {
00872        for (size_t j = 0; j < newSize; ++j)
00873        {
00874           m_data[j].resize(__tmp[j].size());
00875           m_data[j] = __tmp[j];
00876        }
00877     }
00878   }
00879 
00880   template <typename T>
00881   void ColumnVectorData<T>::setDataLimits (T* limits)
00882   {
00883     m_minLegalValue = limits[0];
00884     m_maxLegalValue = limits[1];
00885     m_minDataValue = std::max(limits[2],limits[0]);
00886     m_maxDataValue = std::min(limits[3],limits[1]);
00887   }
00888 
00889   template <typename T>
00890   void ColumnVectorData<T>::doWrite (T* array, long row, long rowSize, long firstElem, T* nullValue)
00891   {
00892     int status(0);
00893     // internal functioning of write_colnull forbids its use for writing
00894     // variable width columns. If a nullvalue argument was supplied it will
00895     // be ignored.
00896     if ( !varLength())
00897     {
00898         if (fits_write_colnull(fitsPointer(),type(),index(),row, firstElem, rowSize,
00899                     array, nullValue,&status)) throw FitsError(status);
00900     }
00901     else
00902     {
00903         if (fits_write_col(fitsPointer(),abs(type()),index(),row,firstElem,rowSize,
00904                     array,&status)) throw FitsError(status);
00905 
00906     }
00907   }
00908 
00909   // Additional Declarations
00910 
00911   // all functions that operate on complex data that call cfitsio 
00912   // need to be specialized. The signature containing complex<T>* objects
00913   // is unfortunate, perhaps, for this purpose, but the user will  access
00914   // rw operations through standard library containers.
00915 
00916 
00917 
00918 
00919 
00920 #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT
00921 template <>
00922 inline void ColumnVectorData<complex<float> >::setDataLimits (complex<float>* limits)
00923         {
00924                 m_minLegalValue = limits[0];
00925                 m_maxLegalValue = limits[1];
00926                 m_minDataValue =  limits[2];
00927                 m_maxDataValue =  limits[3];
00928         }
00929 #else
00930 template <>
00931   void 
00932   ColumnVectorData<complex<float> >::setDataLimits (complex<float>* limits);
00933 #endif
00934 
00935 #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT
00936 template <>
00937 inline void ColumnVectorData<complex<double> >::setDataLimits (complex<double>* limits)
00938         {
00939                 m_minLegalValue = limits[0];
00940                 m_maxLegalValue = limits[1];
00941                 m_minDataValue =  limits[2];
00942                 m_maxDataValue =  limits[3];
00943         }
00944 #else
00945  template <>
00946    void 
00947    ColumnVectorData<complex<double> >::setDataLimits (complex<double>* limits);
00948 #endif
00949 
00950 
00951 #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT
00952         template <>
00953         inline void ColumnVectorData<std::complex<float> >::readColumnData(long firstRow, 
00954                                 long nelements, long firstElem, std::complex<float>* null )
00955         {
00956             int   status=0;
00957             float nulval (0);
00958             FITSUtil::auto_array_ptr<float> pArray(new float[2*nelements]); 
00959             float*     array = pArray.get();
00960             int    anynul(0);
00961 
00962             if (fits_read_col_cmp(fitsPointer(),index(),firstRow, firstElem,
00963                             nelements,nulval,array,&anynul,&status) ) throw FitsError(status);
00964 
00965             if (m_data.size() != static_cast<size_t>(rows())) m_data.resize(rows());
00966 
00967             std::valarray<std::complex<float> > readData(nelements);
00968             for (long j = 0; j < nelements; ++j)
00969             {
00970                     readData[j] = std::complex<float>(array[2*j],array[2*j+1]);
00971             }
00972             size_t countRead = 0;
00973             const size_t ONE = 1;
00974 
00975             if (m_data.size() != static_cast<size_t>(rows())) m_data.resize(rows());
00976             size_t vectorSize(0);
00977             if (!varLength())
00978             {
00979                  vectorSize = std::max(repeat(),ONE); // safety check.
00980             }
00981             else
00982             {
00983                  // assume that the user specified the correct length for 
00984                  // variable columns. This should be ok since readVariableColumns
00985                  // uses fits_read_descripts to return this information from the
00986                  // fits pointer, and this is passed as nelements here.
00987                  vectorSize = nelements;       
00988             }
00989             size_t n = nelements; 
00990 
00991             int i = firstRow;
00992             int ii = i - 1;
00993             while ( countRead < n)
00994             {
00995                     std::valarray<complex<float> >& current = m_data[ii];
00996                     if (current.size() != vectorSize) current.resize(vectorSize,0.);
00997                     int elementsInFirstRow = vectorSize-firstElem + 1;
00998                     bool lastRow = ( (nelements - countRead) < vectorSize);
00999                     if (lastRow)
01000                     {
01001                             int elementsInLastRow = nelements - countRead;
01002                             std::copy(&readData[countRead],&readData[0]+nelements,&current[0]);
01003                             countRead += elementsInLastRow;
01004                     }             
01005                     // what to do with complete rows. if firstElem == 1 the 
01006                     else 
01007                     {
01008                             if (firstElem == 1 || (firstElem > 1 && i > firstRow) )
01009                             {
01010                                     current = readData[std::slice(vectorSize*(ii-firstRow)+
01011                                                                elementsInFirstRow,vectorSize,1)];
01012                                     ++ii;
01013                                     ++i;
01014                                     countRead += vectorSize;   
01015                             }   
01016                             else
01017                             { 
01018                                     if (i == firstRow)
01019                                     {
01020                                             std::copy(&readData[0],&readData[0]+elementsInFirstRow,
01021                                                                             &current[firstElem]);
01022                                             countRead += elementsInFirstRow;
01023                                             ++i;
01024                                             ++ii;
01025                                     }
01026                             }
01027                     }
01028             }
01029     }
01030 #else
01031 template <>
01032 void ColumnVectorData<complex<float> >::readColumnData(long firstRow, 
01033                         long nelements, 
01034                         long firstElem, complex<float>* null);
01035 #endif
01036 
01037 #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT
01038     template <>
01039     inline void ColumnVectorData<complex<double> >::readColumnData (long firstRow, 
01040               long nelements,long firstElem, 
01041               complex<double>* nullValue)
01042     {
01043 
01044         // duplicated for each complex type to work around imagined or
01045         // actual compiler deficiencies.
01046             int   status=0;
01047             double nulval (0);
01048             FITSUtil::auto_array_ptr<double> pArray(new double[2*nelements]); 
01049             double*     array = pArray.get();
01050             int    anynul(0);
01051 
01052             if (fits_read_col_dblcmp(fitsPointer(),index(),firstRow, firstElem,
01053                             nelements,nulval,array,&anynul,&status) ) throw FitsError(status);
01054 
01055             if (m_data.size() != static_cast<size_t>(rows())) m_data.resize(rows());
01056 
01057             std::valarray<std::complex<double> > readData(nelements);
01058             for (long j = 0; j < nelements; ++j)
01059             {
01060                     readData[j] = std::complex<double>(array[2*j],array[2*j+1]);
01061             }
01062             size_t countRead = 0;
01063             const size_t ONE = 1;
01064 
01065             if (m_data.size() != static_cast<size_t>(rows())) m_data.resize(rows());
01066             size_t vectorSize(0);
01067             if (!varLength())
01068             {
01069                  vectorSize = std::max(repeat(),ONE); // safety check.
01070             }
01071             else
01072             {
01073                  // assume that the user specified the correct length for 
01074                  // variable columns. This should be ok since readVariableColumns
01075                  // uses fits_read_descripts to return this information from the
01076                  // fits pointer, and this is passed as nelements here.
01077                  vectorSize = nelements;       
01078             }
01079             size_t n = nelements; 
01080 
01081             int i = firstRow;
01082             int ii = i - 1;
01083             while ( countRead < n)
01084             {
01085                     std::valarray<std::complex<double> >& current = m_data[ii];
01086                     if (current.size() != vectorSize) current.resize(vectorSize,0.);
01087                     int elementsInFirstRow = vectorSize-firstElem + 1;
01088                     bool lastRow = ( (nelements - countRead) < vectorSize);
01089                     if (lastRow)
01090                     {
01091                             int elementsInLastRow = nelements - countRead;
01092                             std::copy(&readData[countRead],&readData[0]+nelements,&current[0]);
01093                             countRead += elementsInLastRow;
01094                     }             
01095                     // what to do with complete rows. if firstElem == 1 the 
01096                     else 
01097                     {
01098                             if (firstElem == 1 || (firstElem > 1 && i > firstRow) )
01099                             {
01100                                     current = readData[std::slice(vectorSize*(ii-firstRow)+
01101                                                                elementsInFirstRow,vectorSize,1)];
01102                                     ++ii;
01103                                     ++i;
01104                                     countRead += vectorSize;   
01105                             }   
01106                             else
01107                             { 
01108                                     if (i == firstRow)
01109                                     {
01110                                             std::copy(&readData[0],&readData[0]+elementsInFirstRow,
01111                                                                             &current[firstElem]);
01112                                             countRead += elementsInFirstRow;
01113                                             ++i;
01114                                             ++ii;
01115                                     }
01116                             }
01117                     }
01118             }
01119     }
01120 #else
01121 template <>
01122 void ColumnVectorData<complex<double> >::readColumnData (long firstRow, 
01123                         long nelements,
01124                         long firstElem, complex<double>* null);
01125 #endif
01126 
01127 #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT
01128         template <>
01129         inline void ColumnVectorData<complex<float> >::writeFixedArray 
01130                         (complex<float>* data, long nElements, long nRows, long firstRow, 
01131                          complex<float>* nullValue)
01132         {
01133 
01134                 int status(0);
01135 
01136     // check for sanity of inputs, then write to file.
01137     // this function writes only complete rows to a table with
01138     // fixed width rows.
01139 
01140 
01141                 if ( nElements < nRows*static_cast<long>(repeat()) )
01142                 {
01143 #ifdef SSTREAM_DEFECT
01144                         std::ostrstream msgStr;
01145 #else
01146                         std::ostringstream msgStr;
01147 #endif
01148                         msgStr << " input array size: " << nElements 
01149                                         << " required " << nRows*repeat();
01150 #ifdef SSTREAM_DEFECT
01151                         msgStr << std::ends;
01152 #endif
01153 
01154 
01155                         String msg(msgStr.str());
01156 
01157                         throw Column::InsufficientElements(msg);
01158                 } 
01159 
01160                 FITSUtil::auto_array_ptr<float> realData(new float[2*nElements]);
01161 
01162                 for (int j = 0; j < nElements; ++j)
01163                 {
01164                         realData[2*j] = data[j].real();
01165                         realData[2*j+1] = data[j].imag();       
01166                 }
01167 
01168 
01169 
01170                 if (fits_write_col_cmp(fitsPointer(),index(),firstRow,
01171                         1,nElements,realData.get(),&status)) throw FitsError(status);
01172 
01173                 parent()->updateRows();
01174         }
01175 #else
01176 template <>
01177 void ColumnVectorData<complex<float> >::writeFixedArray 
01178      (complex<float>* data, long nElements, long nRows, long firstRow, std::complex<float>* null);
01179 #endif
01180 
01181 #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT
01182         template <>
01183         inline void ColumnVectorData<complex<double> >::writeFixedArray 
01184                         (complex<double>* data, long nElements, long nRows, long firstRow, 
01185                          complex<double>* nullValue)
01186         {
01187                 int status(0);
01188 
01189     // check for sanity of inputs, then write to file.
01190     // this function writes only complete rows to a table with
01191     // fixed width rows.
01192 
01193 
01194                 if ( nElements < nRows*static_cast<long>(repeat()) )
01195                 {
01196 #ifdef SSTREAM_DEFECT
01197                         std::ostrstream msgStr;
01198 #else
01199                         std::ostringstream msgStr;
01200 #endif
01201                         msgStr << " input array size: " << nElements 
01202                                         << " required " << nRows*repeat();
01203 #ifdef SSTREAM_DEFECT
01204                         msgStr << std::ends;
01205 #endif
01206 
01207                         String msg(msgStr.str());
01208 
01209                         throw Column::InsufficientElements(msg);
01210                 } 
01211 
01212                 FITSUtil::auto_array_ptr<double> realData(new double[2*nElements]);
01213 
01214                 for (int j = 0; j < nElements; ++j)
01215                 {
01216                         realData[2*j] = data[j].real();
01217                         realData[2*j+1] = data[j].imag();       
01218                 }
01219 
01220 
01221 
01222                 if (fits_write_col_dblcmp(fitsPointer(),index(),firstRow,
01223                         1,nElements,realData.get(),&status)) throw FitsError(status);
01224 
01225                 parent()->updateRows();
01226 
01227         }
01228 #else
01229 template <>
01230 void ColumnVectorData<complex<double> >::writeFixedArray 
01231                 (complex<double>* data, long nElements, long nRows, long firstRow, 
01232                  std::complex<double>* null);
01233 #endif
01234 
01235 #ifdef SPEC_TEMPLATE_DECL_DEFECT
01236   template <>
01237   inline void  
01238   ColumnVectorData<std::complex<float> >::doWrite 
01239   (std::complex<float>* data, long row, long rowSize, long firstElem, std::complex<float>* nullValue )
01240   {
01241     int status(0);
01242     FITSUtil::auto_array_ptr<float> carray( new float[2*rowSize]); 
01243     for ( long j = 0 ; j < rowSize; ++ j)
01244       {
01245         carray[2*j] = data[j].real();
01246         carray[2*j + 1] = data[j].imag();
01247       }
01248     if (fits_write_col_cmp(fitsPointer(),index(),row,firstElem,rowSize,
01249                            carray.get(),&status)) throw FitsError(status);
01250   }
01251 
01252 
01253   template <>
01254   inline void  
01255   ColumnVectorData<std::complex<double> >::doWrite
01256   (std::complex<double>* data, long row, long rowSize, long firstElem, std::complex<double>* nullValue )
01257   {
01258     int status(0);
01259     FITSUtil::auto_array_ptr<double> carray( new double[2*rowSize]); 
01260     for ( long j = 0 ; j < rowSize; ++ j)
01261       {
01262         carray[2*j] = data[j].real();
01263         carray[2*j + 1] = data[j].imag();
01264       }
01265     if (fits_write_col_dblcmp(fitsPointer(),index(),row,firstElem,rowSize,
01266                               carray.get(),&status)) throw FitsError(status);
01267 
01268   }
01269 
01270 #else
01271 template<>
01272 void 
01273 ColumnVectorData<complex<float> >::doWrite 
01274                 ( complex<float>* data, long row, long rowSize, long firstElem, complex<float>* nullValue);
01275 
01276 template<>
01277 void 
01278 ColumnVectorData<complex<double> >::doWrite 
01279                 ( complex<double>* data, long row, long rowSize, long firstElem, complex<double>* nullValue );
01280 #endif
01281 } // namespace CCfits
01282 
01283 
01284 #endif
Generated on Tue Dec 6 2011 16:12:51 for CCfits by   doxygen 1.7.5.1
CCfits/html/config_8h_source.html0000644000225700000360000002135311667502523016610 0ustar cagordonlhea CCfits: config.h Source File
CCfits  2.4
config.h
00001 /* config.h.  Generated by configure.  */
00002 /* config.h.in.  Generated from configure.in by autoheader.  */
00003 
00004 /* Define to 1 if you have the <dlfcn.h> header file. */
00005 #define HAVE_DLFCN_H 1
00006 
00007 /* Define to 1 if you have the <inttypes.h> header file. */
00008 #define HAVE_INTTYPES_H 1
00009 
00010 /* Define to 1 if you have the `cfitsio' library (-lcfitsio). */
00011 #define HAVE_LIBCFITSIO 1
00012 
00013 /* Define to 1 if you have the <memory.h> header file. */
00014 #define HAVE_MEMORY_H 1
00015 
00016 /* define if the compiler implements namespaces */
00017 #define HAVE_NAMESPACES 
00018 
00019 /* Define if you have the package */
00020 #define HAVE_PKG_cfitsio 1
00021 
00022 /* Define to 1 if you have the <stdint.h> header file. */
00023 #define HAVE_STDINT_H 1
00024 
00025 /* Define to 1 if you have the <stdlib.h> header file. */
00026 #define HAVE_STDLIB_H 1
00027 
00028 /* Define to 1 if you have the <strings.h> header file. */
00029 #define HAVE_STRINGS_H 1
00030 
00031 /* Define to 1 if you have the <string.h> header file. */
00032 #define HAVE_STRING_H 1
00033 
00034 /* Define to 1 if you have the <sys/stat.h> header file. */
00035 #define HAVE_SYS_STAT_H 1
00036 
00037 /* Define to 1 if you have the <sys/types.h> header file. */
00038 #define HAVE_SYS_TYPES_H 1
00039 
00040 /* Define to 1 if you have the <unistd.h> header file. */
00041 #define HAVE_UNISTD_H 1
00042 
00043 /* define if the compiler has valarray<T> */
00044 #define HAVE_VALARRAY 
00045 
00046 /* Define if IteratorBase does not work with some STL functions. */
00047 /* #undef ITERATORBASE_DEFECT */
00048 
00049 /* Name of package */
00050 #define PACKAGE "CCfits"
00051 
00052 /* Define to the address where bug reports for this package should be sent. */
00053 #define PACKAGE_BUGREPORT ""
00054 
00055 /* Define to the full name of this package. */
00056 #define PACKAGE_NAME ""
00057 
00058 /* Define to the full name and version of this package. */
00059 #define PACKAGE_STRING ""
00060 
00061 /* Define to the one symbol short name of this package. */
00062 #define PACKAGE_TARNAME ""
00063 
00064 /* Define to the version of this package. */
00065 #define PACKAGE_VERSION ""
00066 
00067 /* Define partical template specializtion can not be declared. */
00068 /* #undef SPEC_TEMPLATE_DECL_DEFECT */
00069 
00070 /* Define to 1 if you have the <strstream> header file instead of <sstream> */
00071 /* #undef SSTREAM_DEFECT */
00072 
00073 /* Define to 1 if you have the ANSI C header files. */
00074 #define STDC_HEADERS 1
00075 
00076 /* Define if compile can not resolve ambiguity in overloaded template
00077    functions. */
00078 /* #undef TEMPLATE_AMBIG7_DEFECT */
00079 
00080 /* Version number of package */
00081 #define VERSION "2.4"
Generated on Tue Dec 6 2011 16:12:51 for CCfits by   doxygen 1.7.5.1
CCfits/html/ExtHDU_8h_source.html0000644000225700000360000011554111667502523016447 0ustar cagordonlhea CCfits: ExtHDU.h Source File
CCfits  2.4
ExtHDU.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef EXTHDU_H
00010 #define EXTHDU_H 1
00011 
00012 // CCfitsHeader
00013 #include "CCfits.h"
00014 // HDU
00015 #include "HDU.h"
00016 // FitsError
00017 #include "FitsError.h"
00018 
00019 namespace CCfits {
00020   class Column;
00021 
00022 } // namespace CCfits
00023 
00024 
00025 namespace CCfits {
00026 
00421   class ExtHDU : public HDU  //## Inherits: <unnamed>%38048213E7A8
00422   {
00423 
00424     public:
00425 
00426 
00427 
00428       class WrongExtensionType : public FitsException  //## Inherits: <unnamed>%39E61E630349
00429       {
00430         public:
00431             WrongExtensionType (const String& msg, bool silent = true);
00432 
00433         protected:
00434         private:
00435         private: //## implementation
00436       };
00437         ExtHDU(const ExtHDU &right);
00438         virtual ~ExtHDU();
00439         friend bool operator<(const ExtHDU &left,const ExtHDU &right);
00440 
00441         friend bool operator>(const ExtHDU &left,const ExtHDU &right);
00442 
00443         friend bool operator<=(const ExtHDU &left,const ExtHDU &right);
00444 
00445         friend bool operator>=(const ExtHDU &left,const ExtHDU &right);
00446 
00447         static void readHduName (const fitsfile* fptr, int hduIndex, String& hduName, int& hduVersion);
00448         virtual void readData (bool readFlag = false, const std::vector<String>& keys = std::vector<String>()) = 0;
00449         const String& name () const;
00450         virtual HDU * clone (FITSBase* p) const = 0;
00451         //      By all means necessary, set the fitsfile pointer so that
00452         //      this HDU is the current HDU.
00453         //
00454         //      This would appear to be a good candidate for the public
00455         //      interface.
00456         virtual void makeThisCurrent () const;
00457         virtual Column& column (const String& colName, bool caseSensitive = true) const;
00458         virtual Column& column (int colIndex) const;
00459         virtual long rows () const;
00460         virtual void addColumn (ValueType type, const String& columnName, long repeatWidth, const String& colUnit = String(""), long decimals = -1, size_t columnNumber = 0);
00461         virtual void deleteColumn (const String& columnName);
00462         virtual long getRowsize () const;
00463         virtual int numCols () const;
00464         virtual const std::map<string, Column*>& column () const;
00465 
00466         bool isCompressed () const;
00467         int version () const;
00468         void version (int value);
00469         static const String& missHDU ();
00470         static void setMissHDU (const String& value);
00471 
00472     public:
00473       // Additional Public Declarations
00474 
00475       // interface is virtually identical to PHDU. The implementation is
00476       // similar apart from a check for wrong extension type.
00477 
00478 
00479 
00480 
00481       template <typename S>
00482       void write(const std::vector<long>& first,
00483                     long nElements,
00484                     const std::valarray<S>& data,
00485                     S* nullValue);
00486 
00487 
00488       template <typename S>
00489       void write(long first,
00490                     long nElements,
00491                     const std::valarray<S>& data,
00492                     S* nullValue);                
00493 
00494       template <typename S>
00495       void write(const std::vector<long>& first,
00496                     long nElements,
00497                     const std::valarray<S>& data);
00498 
00499 
00500       template <typename S>
00501       void write(long first,
00502                     long nElements,
00503                     const std::valarray<S>& data);
00504 
00505       template <typename S>
00506       void write(const std::vector<long>& firstVertex,
00507                     const std::vector<long>& lastVertex,
00508                     const std::valarray<S>& data);     
00509 
00510       // read image data & return the array. Can't return a reference because type
00511       // conversion in general requires allocating a new object.
00512       // note semantics of reading column data are easily distinguished: they require
00513       // the user to perform the operation EXT.column({name,index}).read(...)
00514 
00515       template <typename S>
00516       void read (std::valarray<S>& image) ; 
00517 
00518       template<typename S> 
00519       void read (std::valarray<S>& image, 
00520                       long first,
00521                       long nElements, 
00522                       S* nullValue) ; 
00523 
00524       template<typename S>
00525       void read (std::valarray<S>& image, 
00526                       const std::vector<long>& first, 
00527                       long nElements, 
00528                       S* nullValue) ; 
00529 
00530       template<typename S>
00531       void read (std::valarray<S>& image, 
00532                       const std::vector<long>& firstVertex, 
00533                       const std::vector<long>& lastVertex, 
00534                       const std::vector<long>& stride) ; 
00535 
00536       template<typename S>
00537       void read (std::valarray<S>& image, 
00538                       long first,
00539                       long nElements) ; 
00540 
00541       template<typename S>
00542       void read (std::valarray<S>& image, 
00543                       const std::vector<long>& first,
00544                       long nElements) ; 
00545 
00546       template<typename S>
00547       void read (std::valarray<S>& image, 
00548                       const std::vector<long>& firstVertex, 
00549                       const std::vector<long>& lastVertex, 
00550                       const std::vector<long>& stride, 
00551                       S* nullValue) ; 
00552 
00553     protected:
00554         //      ExtHDU needs a default constructor. This is it.
00555         ExtHDU (FITSBase* p, HduType xtype, const String &hduName, int version);
00556         //      The writing constructor. Forces the user to supply a name
00557         //      for the HDU
00558         ExtHDU (FITSBase* p, HduType xtype, const String &hduName, int bitpix, int naxis, const std::vector<long>& axes, int version);
00559         //      ExtHDU constructor for getting ExtHDUs by number.
00560         //      Necessary since EXTNAME is a reserved not required
00561         //      keyword.
00562         ExtHDU (FITSBase* p, HduType xtype, int number);
00563 
00564         virtual std::ostream & put (std::ostream &s) const = 0;
00565         virtual void setColumn (const String& colname, Column* value);
00566         virtual void checkExtensionType () const;
00567         int getVersion ();
00568         long pcount () const;
00569         void pcount (long value);
00570         long gcount () const;
00571         void gcount (long value);
00572         HduType xtension () const;
00573         void xtension (HduType value);
00574 
00575       // Additional Protected Declarations
00576 
00577     private:
00578         virtual void initRead () = 0;
00579         void checkXtension ();
00580 
00581       // Additional Private Declarations
00582 
00583     private: //## implementation
00584       // Data Members for Class Attributes
00585         long m_pcount;
00586         long m_gcount;
00587         int m_version;
00588         HduType m_xtension;
00589         static String s_missHDU;
00590 
00591       // Data Members for Associations
00592         String m_name;
00593 
00594       // Additional Implementation Declarations
00595 
00596   };
00597 
00598   // Class CCfits::ExtHDU::WrongExtensionType 
00599 
00600   // Class CCfits::ExtHDU 
00601 
00602   inline bool operator<(const ExtHDU &left,const ExtHDU &right)
00603   {
00604         if (left.m_name < right.m_name) return true; 
00605         if (left.m_name > right.m_name) return false;
00606         if (left.m_name == right.m_name)
00607         {
00608                 if (left.m_version < right.m_version) return true;
00609         }      
00610         return false;       
00611   }
00612 
00613   inline bool operator>(const ExtHDU &left,const ExtHDU &right)
00614   {
00615      return !operator<=(left,right);
00616   }
00617 
00618   inline bool operator<=(const ExtHDU &left,const ExtHDU &right)
00619   {
00620         if (left.m_name <= right.m_name) 
00621         {
00622                 if (left.m_version <= right.m_version) return true;
00623         }
00624         return false;     
00625   }
00626 
00627   inline bool operator>=(const ExtHDU &left,const ExtHDU &right)
00628   {
00629     return !operator<(left,right);    
00630   }
00631 
00632 
00633   inline const String& ExtHDU::name () const
00634   {
00635 
00636     return m_name;
00637   }
00638 
00639   inline long ExtHDU::pcount () const
00640   {
00641     return m_pcount;
00642   }
00643 
00644   inline void ExtHDU::pcount (long value)
00645   {
00646     m_pcount = value;
00647   }
00648 
00649   inline long ExtHDU::gcount () const
00650   {
00651     return m_gcount;
00652   }
00653 
00654   inline void ExtHDU::gcount (long value)
00655   {
00656     m_gcount = value;
00657   }
00658 
00659   inline int ExtHDU::version () const
00660   {
00661     return m_version;
00662   }
00663 
00664   inline void ExtHDU::version (int value)
00665   {
00666     m_version = value;
00667   }
00668 
00669   inline HduType ExtHDU::xtension () const
00670   {
00671     return m_xtension;
00672   }
00673 
00674   inline void ExtHDU::xtension (HduType value)
00675   {
00676     m_xtension = value;
00677   }
00678 
00679   inline const String& ExtHDU::missHDU ()
00680   {
00681     return s_missHDU;
00682   }
00683 
00684   inline void ExtHDU::setMissHDU (const String& value)
00685   {
00686     s_missHDU = value;
00687   }
00688 
00689 } // namespace CCfits
00690 
00691 
00692 #endif
Generated on Tue Dec 6 2011 16:12:51 for CCfits by   doxygen 1.7.5.1
CCfits/html/ExtHDUT_8h_source.html0000644000225700000360000022165011667502523016572 0ustar cagordonlhea CCfits: ExtHDUT.h Source File
CCfits  2.4
ExtHDUT.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef EXTHDUT_H
00010 #define EXTHDUT_H
00011 #include "ImageExt.h"
00012 #include "Table.h"
00013 #include "Column.h"
00014 
00015 namespace CCfits 
00016 {
00017         template <typename S>
00018         void ExtHDU::read (std::valarray<S>& image) 
00019         {
00020                 makeThisCurrent();
00021                 long init(1);
00022                 long nElements(std::accumulate(naxes().begin(),naxes().end(),init,
00023                                 std::multiplies<long>()));
00024                 read(image,1,nElements,static_cast<S*>(0));
00025 
00026 
00027         }
00028 
00029 
00030 
00031         template <typename S>
00032         void ExtHDU::read (std::valarray<S>& image, long first,long nElements) 
00033         {
00034                 makeThisCurrent();
00035                 read(image, first,nElements,static_cast<S*>(0));
00036         }
00037 
00038         template <typename S>
00039         void ExtHDU::read (std::valarray<S>& image, long first, long nElements,  S* nulValue) 
00040         {
00041 
00042                 makeThisCurrent();                
00043                 if ( ImageExt<S>* extimage = dynamic_cast<ImageExt<S>*>(this))
00044                 {
00045                         // proceed if cast is successful.                  
00046                         const std::valarray<S>& __tmp 
00047                                         = extimage->readImage(first,nElements,nulValue);
00048                         image.resize(__tmp.size());
00049                         image = __tmp;
00050                 }
00051                 else 
00052                 {
00053                         if (bitpix() == Ifloat)
00054                         {
00055                                 ImageExt<float>& extimage 
00056                                                 = dynamic_cast<ImageExt<float>&>(*this);
00057                                 float nulVal(0);
00058                                 if (nulValue) nulVal = static_cast<float>(*nulValue);                                 
00059                                 FITSUtil::fill(image,
00060                                                 extimage.readImage(first,nElements,&nulVal));
00061                         }
00062                         else if (bitpix() == Idouble)
00063                         {
00064                                 ImageExt<double>& extimage 
00065                                                 = dynamic_cast<ImageExt<double>&>(*this);
00066                                 double nulVal(0);
00067                                 if (nulValue) nulVal = static_cast<double>(*nulValue);                                 
00068                                 FITSUtil::fill(image,
00069                                                 extimage.readImage(first,nElements,&nulVal));
00070                         }
00071                         else if (bitpix() == Ibyte)
00072                         {
00073                                 ImageExt<unsigned char>& extimage 
00074                                                 = dynamic_cast<ImageExt<unsigned char>&>(*this);
00075                                 unsigned char nulVal(0);
00076                                 if (nulValue) nulVal = static_cast<unsigned char>(*nulValue);                                 
00077                                 FITSUtil::fill(image,
00078                                                 extimage.readImage(first,nElements,&nulVal));
00079                         } 
00080                         else if (bitpix() == Ilong)
00081                         {
00082                                 if ( zero() == ULBASE && scale() == 1)
00083                                 {                                
00084                                         ImageExt<unsigned INT32BIT>& extimage 
00085                                                 = dynamic_cast<ImageExt<unsigned INT32BIT>&>(*this);
00086                                         unsigned INT32BIT nulVal(0);
00087                                         if (nulValue) nulVal 
00088                                                 = static_cast<unsigned INT32BIT>(*nulValue);                                 
00089                                         FITSUtil::fill(image,
00090                                                 extimage.readImage(first,nElements,&nulVal));
00091                                 }
00092                                 else
00093                                 {
00094                                         ImageExt<INT32BIT>& extimage 
00095                                                         = dynamic_cast<ImageExt<INT32BIT>&>(*this);
00096                                         INT32BIT nulVal(0);
00097                                         if (nulValue) nulVal = static_cast<INT32BIT>(*nulValue);                                 
00098                                         FITSUtil::fill(image,
00099                                                 extimage.readImage(first,nElements,&nulVal));
00100                                 }
00101                         }    
00102                         else if (bitpix() == Ishort)
00103                         {
00104                                 if ( zero() == USBASE && scale() == 1)
00105                                 {                                
00106                                         ImageExt<unsigned short>& extimage
00107                                                 = dynamic_cast<ImageExt<unsigned short>&>(*this);
00108                                         unsigned short nulVal(0);
00109                                         if (nulValue) nulVal 
00110                                                 = static_cast<unsigned short>(*nulValue);                                 
00111                                         FITSUtil::fill(image,
00112                                                 extimage.readImage(first,nElements,&nulVal));
00113                                 }
00114                                 else
00115                                 {
00116                                         ImageExt<short>& extimage 
00117                                                         = dynamic_cast<ImageExt<short>&>(*this);
00118                                         short nulVal(0);
00119                                         if (nulValue) nulVal = static_cast<short>(*nulValue);                                 
00120                                         FITSUtil::fill(image,
00121                                                 extimage.readImage(first,nElements,&nulVal));
00122                                 }
00123                         }          
00124                         else 
00125                         {
00126                                 throw CCfits::FitsFatal(" casting image types ");
00127                         }     
00128                 }
00129 
00130         }  
00131 
00132         template<typename S>
00133         void ExtHDU::read (std::valarray<S>& image, const std::vector<long>& first,
00134                                 long nElements, 
00135                                 S* nulValue)
00136         {
00137                 makeThisCurrent();
00138                 long firstElement(0);
00139                 long dimSize(1);
00140                 std::vector<long> inputDimensions(naxis(),1);
00141                 size_t sNaxis = static_cast<size_t>(naxis());
00142                 size_t n(std::min(sNaxis,first.size()));
00143                 std::copy(&first[0],&first[0]+n,&inputDimensions[0]);                
00144                 for (long i = 0; i < naxis(); ++i)
00145                 {
00146 
00147                    firstElement +=  ((inputDimensions[i] - 1)*dimSize);
00148                    dimSize *=naxes(i);   
00149                 }
00150                 ++firstElement;                
00151 
00152 
00153                 read(image, firstElement,nElements,nulValue);
00154 
00155 
00156 
00157         } 
00158 
00159         template<typename S>
00160         void ExtHDU::read (std::valarray<S>& image, const std::vector<long>& first, 
00161                                 long nElements) 
00162         {
00163                 makeThisCurrent();
00164                 read(image, first,nElements,static_cast<S*>(0));
00165 
00166         } 
00167 
00168         template<typename S>
00169         void ExtHDU::read (std::valarray<S>& image, const std::vector<long>& firstVertex, 
00170                                 const std::vector<long>& lastVertex, 
00171                                 const std::vector<long>& stride, 
00172                                 S* nulValue)
00173         {
00174                 makeThisCurrent();
00175                 if (ImageExt<S>* extimage = dynamic_cast<ImageExt<S>*>(this))
00176                 {
00177                         const std::valarray<S>& __tmp 
00178                                       = extimage->readImage(firstVertex,lastVertex,stride,nulValue);
00179                         image.resize(__tmp.size());
00180                         image = __tmp;
00181                 }
00182                 else
00183                 {
00184                         // FITSutil::fill will take care of sizing.
00185                         if (bitpix() == Ifloat)
00186                         {
00187                                 float nulVal(0);
00188                                 if (nulValue) nulVal = static_cast<float>(*nulValue);                                 
00189                                 ImageExt<float>& extimage = dynamic_cast<ImageExt<float>&>(*this);
00190                                 FITSUtil::fill(image,
00191                                         extimage.readImage(firstVertex,lastVertex,stride,&nulVal));
00192                         }
00193                         else if (bitpix() == Idouble)
00194                         {
00195                                 ImageExt<double>& extimage = dynamic_cast<ImageExt<double>&>(*this);
00196                                 double nulVal(0);
00197                                 if (nulValue) nulVal = static_cast<double>(*nulValue);                                 
00198                                 FITSUtil::fill(image,
00199                                          extimage.readImage(firstVertex,lastVertex,stride,&nulVal));
00200                         }
00201                         else if (bitpix() == Ibyte)
00202                         {
00203                                 ImageExt<unsigned char>& extimage 
00204                                                 = dynamic_cast<ImageExt<unsigned char>&>(*this);
00205                                 unsigned char nulVal(0);
00206                                 if (nulValue) nulVal = static_cast<unsigned char>(*nulValue);                                 
00207                                 FITSUtil::fill(image,
00208                                          extimage.readImage(firstVertex,lastVertex,stride,&nulVal));
00209                         } 
00210                         else if (bitpix() == Ilong)
00211                         {
00212                                 if ( zero() == ULBASE && scale() == 1)
00213                                 {                                
00214                                         ImageExt<unsigned INT32BIT>& extimage 
00215                                                 = dynamic_cast<ImageExt<unsigned INT32BIT>&>(*this);
00216                                         unsigned INT32BIT nulVal(0);
00217                                         if (nulValue) 
00218                                                 nulVal = static_cast<unsigned INT32BIT>(*nulValue);                                 
00219                                         FITSUtil::fill(image,
00220                                          extimage.readImage(firstVertex,lastVertex,stride,&nulVal));
00221                                 }
00222                                 else
00223                                 {
00224                                         ImageExt<INT32BIT>& extimage = dynamic_cast<ImageExt<INT32BIT>&>(*this);
00225                                         INT32BIT nulVal(0);
00226                                         if (nulValue) nulVal = static_cast<INT32BIT>(*nulValue);                                 
00227                                         FITSUtil::fill(image,
00228                                          extimage.readImage(firstVertex,lastVertex,stride,&nulVal));
00229                                 }
00230                         }    
00231                         else if (bitpix() == Ishort)
00232                         {
00233                                 if ( zero() == USBASE && scale() == 1)
00234                                 {                                
00235                                         ImageExt<unsigned short>& extimage 
00236                                                 = dynamic_cast<ImageExt<unsigned short>&>(*this);
00237                                         unsigned short nulVal(0);
00238                                         if (nulValue) nulVal 
00239                                                 = static_cast<unsigned short>(*nulValue);                                 
00240                                         FITSUtil::fill(image,
00241                                          extimage.readImage(firstVertex,lastVertex,stride,&nulVal));
00242                                 }
00243                                 else
00244                                 {        
00245                                         ImageExt<short>& extimage 
00246                                                         = dynamic_cast<ImageExt<short>&>(*this);
00247                                         short nulVal(0);
00248                                         if (nulValue) nulVal = static_cast<short>(*nulValue);                                 
00249                                         FITSUtil::fill(image,
00250                                          extimage.readImage(firstVertex,lastVertex,stride,&nulVal));
00251                                 }
00252                         }          
00253                         else 
00254                         {
00255                                 throw CCfits::FitsFatal(" casting image types ");
00256                         }     
00257                 }
00258         }  
00259 
00260         template<typename S>
00261         void ExtHDU::read (std::valarray<S>& image, const std::vector<long>& firstVertex, 
00262                                 const std::vector<long>& lastVertex, 
00263                                 const std::vector<long>& stride) 
00264         {
00265                 makeThisCurrent();
00266                 read(image, firstVertex,lastVertex,stride,static_cast<S*>(0));
00267         }  
00268 
00269         template <typename S>
00270         void ExtHDU::write(long first,long nElements,const std::valarray<S>& data,S* nulValue)
00271         {                
00272                 // throw if we called image read/write operations on a table.
00273                 makeThisCurrent();
00274                 if (ImageExt<S>* extimage = dynamic_cast<ImageExt<S>*>(this))
00275                 {
00276                         extimage->writeImage(first,nElements,data,nulValue);
00277                 }
00278                 else
00279                 {
00280                         if (bitpix() == Ifloat)
00281                         {
00282                                 std::valarray<float> __tmp;                               
00283                                 ImageExt<float>& imageExt = dynamic_cast<ImageExt<float>&>(*this);
00284                                 FITSUtil::fill(__tmp,data);
00285                                 float* pfNullValue = 0;
00286                                 float fNullValue = 0.0;
00287                                 if (nulValue)
00288                                 {
00289                                    fNullValue = static_cast<float>(*nulValue);
00290                                    pfNullValue = &fNullValue;
00291                                 }
00292                                 imageExt.writeImage(first,nElements,__tmp, pfNullValue);
00293                         }
00294                         else if (bitpix() == Idouble)
00295                         {
00296                                 std::valarray<double> __tmp;                                
00297                                 ImageExt<double>& imageExt 
00298                                                 = dynamic_cast<ImageExt<double>&>(*this);
00299                                 FITSUtil::fill(__tmp,data);
00300                                 double* pdNullValue = 0;
00301                                 double dNullValue = 0.0;
00302                                 if (nulValue)
00303                                 {
00304                                    dNullValue = static_cast<double>(*nulValue);
00305                                    pdNullValue = &dNullValue;
00306                                 }
00307                                 imageExt.writeImage(first,nElements,__tmp,pdNullValue);                              
00308                         }
00309                         else if (bitpix() == Ibyte)
00310                         {
00311                                 ImageExt<unsigned char>& imageExt 
00312                                                 = dynamic_cast<ImageExt<unsigned char>&>(*this);
00313                                 std::valarray<unsigned char> __tmp; 
00314                                 FITSUtil::fill(__tmp,data);                                        
00315                                 unsigned char *pbNull=0;
00316                                 unsigned char bNull=0;
00317                                 if (nulValue)
00318                                 {
00319                                    bNull = static_cast<unsigned char>(*nulValue);
00320                                    pbNull = &bNull;
00321                                 }                                        
00322                                 imageExt.writeImage(first,nElements,__tmp, pbNull); 
00323 
00324                         } 
00325                         else if (bitpix() == Ilong)
00326                         {                               
00327                                 if ( zero() == ULBASE && scale() == 1)
00328                                 {                                
00329                                         ImageExt<unsigned INT32BIT>& imageExt
00330                                                = dynamic_cast<ImageExt<unsigned INT32BIT>&>(*this);
00331                                         std::valarray<unsigned INT32BIT> __tmp;
00332 
00333                                         FITSUtil::fill(__tmp,data);
00334                                         unsigned INT32BIT *plNull=0;
00335                                         unsigned INT32BIT lNull=0;
00336                                         if (nulValue)
00337                                         {
00338                                            lNull = static_cast<unsigned INT32BIT>(*nulValue);
00339                                            plNull = &lNull;
00340                                         }                                        
00341                                         imageExt.writeImage(first,nElements,__tmp,plNull);                          
00342                                 }
00343                                 else
00344                                 {                        
00345                                         ImageExt<INT32BIT>& imageExt 
00346                                                         = dynamic_cast<ImageExt<INT32BIT>&>(*this);
00347                                         std::valarray<INT32BIT> __tmp;                                 
00348                                         FITSUtil::fill(__tmp,data);                                        
00349                                         INT32BIT *plNull=0;
00350                                         INT32BIT lNull=0;
00351                                         if (nulValue)
00352                                         {
00353                                            lNull = static_cast<INT32BIT>(*nulValue);
00354                                            plNull = &lNull;
00355                                         }                                        
00356                                         imageExt.writeImage(first,nElements,__tmp,plNull);                          
00357                                 }                        
00358                         }    
00359                         else if (bitpix() == Ishort)
00360                         {
00361                                 if ( zero() == USBASE && scale() == 1)
00362                                 {                                
00363                                         ImageExt<unsigned short>& imageExt
00364                                                  = dynamic_cast<ImageExt<unsigned short>&>(*this);
00365                                         std::valarray<unsigned short> __tmp;
00366                                         FITSUtil::fill(__tmp,data);
00367                                         unsigned short *psNull=0;
00368                                         unsigned short sNull=0;
00369                                         if (nulValue)
00370                                         {
00371                                            sNull = static_cast<unsigned short>(*nulValue);
00372                                            psNull = &sNull;
00373                                         }                                        
00374                                         imageExt.writeImage(first,nElements,__tmp,psNull);                          
00375                                 }
00376                                 else
00377                                 {             
00378                                         ImageExt<short>& imageExt 
00379                                                         = dynamic_cast<ImageExt<short>&>(*this);
00380                                         std::valarray<short> __tmp; 
00381                                         FITSUtil::fill(__tmp,data);                                        
00382                                         short *psNull=0;
00383                                         short sNull=0;
00384                                         if (nulValue)
00385                                         {
00386                                            sNull = static_cast<short>(*nulValue);
00387                                            psNull = &sNull;
00388                                         }                                        
00389                                         imageExt.writeImage(first,nElements,__tmp,psNull);                          
00390                                 } 
00391                         }        
00392                         else
00393                         {
00394                                 FITSUtil::MatchType<S> errType;                                
00395                                 throw FITSUtil::UnrecognizedType(FITSUtil::FITSType2String(errType()));
00396                         }        
00397                 }
00398         }
00399 
00400         template <typename S>
00401         void ExtHDU::write(long first,
00402                             long nElements,const std::valarray<S>& data)
00403         {
00404            write(first, nElements, data, static_cast<S*>(0));                
00405         }
00406 
00407         template <typename S>
00408         void ExtHDU::write(const std::vector<long>& first,
00409                         long nElements,
00410                         const std::valarray<S>& data,
00411                         S* nulValue)
00412         {        
00413                 // throw if we called image read/write operations on a table.
00414                 makeThisCurrent();
00415                 size_t n(first.size());
00416                 long firstElement(0);
00417                 long dimSize(1);
00418                 for (long i = 0; i < first.size(); ++i)
00419                 {
00420                         firstElement +=  ((first[i] - 1)*dimSize);
00421                         dimSize *=naxes(i);   
00422                 }       
00423                 ++firstElement;
00424 
00425                 write(firstElement,nElements,data,nulValue);
00426         }
00427 
00428         template <typename S>
00429         void ExtHDU::write(const std::vector<long>& first,
00430                         long nElements,
00431                         const std::valarray<S>& data)
00432         {        
00433                 // throw if we called image read/write operations on a table.
00434                 makeThisCurrent();
00435                 size_t n(first.size());
00436                 long firstElement(0);
00437                 long dimSize(1);
00438                 for (long i = 0; i < first.size(); ++i)
00439                 {
00440 
00441                         firstElement +=  ((first[i] - 1)*dimSize);
00442                         dimSize *=naxes(i);   
00443                 }       
00444                 ++firstElement;
00445 
00446                 write(firstElement,nElements,data);                     
00447         }        
00448 
00449 
00450         template <typename S>
00451         void ExtHDU::write(const std::vector<long>& firstVertex,
00452                         const std::vector<long>& lastVertex,
00453                         const std::valarray<S>& data)
00454         {
00455                 makeThisCurrent();
00456                 if (ImageExt<S>* extimage = dynamic_cast<ImageExt<S>*>(this))
00457                 {
00458                         extimage->writeImage(firstVertex,lastVertex,data);  
00459                 }
00460                 else
00461                 {
00462                          // write input type S to Image type...
00463 
00464                         if (bitpix() == Ifloat)
00465                         {
00466                                 ImageExt<float>& extimage = dynamic_cast<ImageExt<float>&>(*this);
00467                                 size_t n(data.size());
00468                                 std::valarray<float> __tmp(n);
00469                                 for (size_t j= 0; j < n; ++j) __tmp[j] = data[j];
00470                                 extimage.writeImage(firstVertex,lastVertex,__tmp);
00471 
00472                         }
00473                         else if (bitpix() == Idouble)
00474                         {
00475                                 ImageExt<double>& extimage 
00476                                         = dynamic_cast<ImageExt<double>&>(*this);
00477                                 size_t n(data.size());
00478                                 std::valarray<double> __tmp(n);
00479                                 for (size_t j= 0; j < n; ++j) __tmp[j] = data[j];
00480                                 extimage.writeImage(firstVertex,lastVertex,__tmp);
00481                         }
00482                         else if (bitpix() == Ibyte)
00483                         {
00484                                 ImageExt<unsigned char>& extimage 
00485                                         = dynamic_cast<ImageExt<unsigned char>&>(*this);
00486                                 size_t n(data.size());
00487                                 std::valarray<unsigned char> __tmp(n);
00488                                 for (size_t j= 0; j < n; ++j) __tmp[j] = data[j];
00489                                 extimage.writeImage(firstVertex,lastVertex,__tmp);                        
00490                         } 
00491                         else if (bitpix() == Ilong)
00492                         {
00493                                 if ( zero() == ULBASE && scale() == 1)
00494                                 {                                
00495                                         ImageExt<unsigned INT32BIT>& extimage 
00496                                                 = dynamic_cast<ImageExt<unsigned INT32BIT>&>(*this);
00497                                         size_t n(data.size());
00498                                         std::valarray<unsigned INT32BIT> __tmp(n);
00499                                         for (size_t j= 0; j < n; ++j) __tmp[j] = data[j];
00500                                         extimage.writeImage(firstVertex,lastVertex,__tmp);    
00501                                 }
00502                                 else                              
00503                                 {
00504                                         ImageExt<INT32BIT>& extimage 
00505                                                         = dynamic_cast<ImageExt<INT32BIT>&>(*this);
00506                                         size_t n(data.size());
00507                                         std::valarray<INT32BIT> __tmp(n);
00508                                         for (size_t j= 0; j < n; ++j) __tmp[j] = data[j];
00509                                         extimage.writeImage(firstVertex,lastVertex,__tmp);
00510                                 }                              
00511                         }    
00512                         else if (bitpix() == Ishort)
00513                         {
00514                                 if ( zero() == USBASE && scale() == 1)
00515                                 {
00516                                         ImageExt<unsigned short>& extimage 
00517                                                 = dynamic_cast<ImageExt<unsigned short>&>(*this);
00518                                         size_t n(data.size());
00519                                         std::valarray<unsigned short> __tmp(n);
00520                                         for (size_t j= 0; j < n; ++j) __tmp[j] = data[j];
00521                                         extimage.writeImage(firstVertex,lastVertex,__tmp);  
00522                                 }
00523                                 else
00524                                 {                    
00525                                         ImageExt<short>& extimage 
00526                                                         = dynamic_cast<ImageExt<short>&>(*this);
00527                                         size_t n(data.size());
00528                                         std::valarray<short> __tmp(n);
00529                                         for (size_t j= 0; j < n; ++j) __tmp[j] = data[j];
00530                                         extimage.writeImage(firstVertex,lastVertex,__tmp);     
00531                                 }                             
00532                         }          
00533                         else
00534                         {
00535                                 FITSUtil::MatchType<S> errType;                                
00536                                 throw FITSUtil::UnrecognizedType(FITSUtil::FITSType2String(errType()));
00537                         }        
00538                 }  
00539         }  
00540 
00541 
00542 } //namespace CCfits
00543 
00544 #endif
Generated on Tue Dec 6 2011 16:12:51 for CCfits by   doxygen 1.7.5.1
CCfits/html/FITS_8h_source.html0000644000225700000360000012671211667502524016116 0ustar cagordonlhea CCfits: FITS.h Source File
CCfits  2.4
FITS.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef FITS_H
00010 #define FITS_H 1
00011 
00012 // exception
00013 #include <exception>
00014 // string
00015 #include <string>
00016 // map
00017 #include <map>
00018 // ExtHDU
00019 #include "ExtHDU.h"
00020 // HDUCreator
00021 #include "HDUCreator.h"
00022 // FitsError
00023 #include "FitsError.h"
00024 
00025 namespace CCfits {
00026   class FITSBase;
00027   class PHDU;
00028   class Table;
00029 
00030 } // namespace CCfits
00031 //class PHDU;
00032 extern "C"
00033 {
00034 #       include <sys/stat.h>
00035 }           
00036 #include <memory>
00037 
00038 
00039 namespace CCfits {
00664   //    ! The FITS object class. Contains a primary HDU and Extensions indexed by name.
00665 
00666 
00667 
00668   class FITS 
00669   {
00670 
00671     public:
00672 
00673 
00674 
00675       class NoSuchHDU : public FitsException  //## Inherits: <unnamed>%396C90CB0236
00676       {
00677         public:
00678             NoSuchHDU (const String& diag, bool silent = true);
00679 
00680         protected:
00681         private:
00682         private: //## implementation
00683       };
00684 
00685 
00686 
00687       class OperationNotSupported : public FitsException  //## Inherits: <unnamed>%39806C7600D5
00688       {
00689         public:
00690             OperationNotSupported (const String& msg, bool silent = true);
00691 
00692         protected:
00693         private:
00694         private: //## implementation
00695       };
00696 
00697 
00698 
00699       class CantOpen : public FitsException  //## Inherits: <unnamed>%39C8EB1D02C0
00700       {
00701         public:
00702             CantOpen (const String& diag, bool silent = true);
00703 
00704         protected:
00705         private:
00706         private: //## implementation
00707       };
00708 
00709 
00710 
00711       struct CantCreate : public FitsException  //## Inherits: <unnamed>%39C8EB10020B
00712       {
00713             CantCreate (const String& diag, bool silent = false);
00714 
00715         public:
00716         protected:
00717         private:
00718         private: //## implementation
00719       };
00720         FITS (const String &name, RWmode mode = Read, bool readDataFlag = false, const std::vector<String>& primaryKeys = std::vector<String>());
00721         //      Open a file and read a specified HDU.
00722         //
00723         //      Optional parameter allows the reading of specified primary HDU keys.
00724         FITS (const String &name, RWmode mode, const string &hduName, bool readDataFlag = false, const std::vector<String>& hduKeys = std::vector<String>(), const std::vector<String>& primaryKey = std::vector<String>(), int version = 1);
00725         //      Read data from a set of specified HDUs. keywords can only be specified for the primary here.
00726         //      The code will call a different constructor for the case where keywords are required for
00727         //      the extensions.
00728         FITS (const String &name, RWmode mode, const std::vector<String>& hduNames, bool readDataFlag = false, const std::vector<String>& primaryKey = std::vector<String>());
00729         //      Initialize a new FITS file object with the primary from a
00730         //      different file.
00731         FITS (const String& fileName, const FITS& source);
00732         //      Fully general FITS HDU reader. May read any part of fits file by
00733         //      supplying HDU names and version numbers, and optionally
00734         //      the data read flag.
00735         FITS (const String &name, RWmode mode, const std::vector<String>& hduNames, const std::vector<std::vector<String> >& hduKeys, bool readDataFlag = false, const std::vector<String>& primaryKeys = std::vector<String>(), const std::vector<int>& hduVersions = std::vector<int>());
00736         //      Writing constructor. Takes a name and information to create an empty
00737         //      Primary HDU which can then be filled with calls to HDU methods.
00738         FITS (const String& name, int bitpix, int naxis, long *naxes);
00739         //      Open a file and read a specified HDU.
00740         //
00741         //      Optional parameter allows the reading of specified primary HDU keys.
00742         FITS (const string &name, RWmode mode, int hduIndex, bool readDataFlag = false, const std::vector<String>& hduKeys = std::vector<String>(), const std::vector<String>& primaryKey = std::vector<String>());
00743         //      Open a file and read a HDU that contains  specified
00744         //      search keywords with [optional] specified values
00745         //      (sometimes one just wants to know that the keyword is present).
00746         //
00747         //      Optional parameters allows the reading of specified primary HDU keys and specified keywords in
00748         //      the HDU of interest.
00749         FITS (const String &name, RWmode mode, const std::vector<String>& searchKeys, const std::vector<String> &searchValues, bool readDataFlag = false, const std::vector<String>& hduKeys = std::vector<String>(), const std::vector<String>& primaryKey = std::vector<string>(), int version = 1);
00750         ~FITS();
00751 
00752         static void clearErrors ();
00753         void deleteExtension (const String& doomed, int version = 1);
00754         //      Read keys and data from a single ExtHDU in the file.
00755         void read (const String &hduName, bool readDataFlag = false, const std::vector<String> &keys = std::vector<String>(), int version = 1);
00756         //      Read multiple ExtHDUs. If the version number needs to be specified then one must call a
00757         //      different method.
00758         void read (const std::vector<String> &hduNames, bool readDataFlag = false);
00759         //      Read selected data from multiple ExtHDUs
00760         void read (const std::vector<String> &hduNames, const std::vector<std::vector<String> > &keys, bool readDataFlag = false, const std::vector<int>& hduVersions = std::vector<int>());
00761         //      Read keys and data from a single ExtHDU in the file.
00762         void read (int hduIndex,        // Construct and Read HDU specified by number. One can add further HDUs by number using
00763                 // the HDUCreator factory.
00764         bool readDataFlag = false, const std::vector<String> &keys = std::vector<String>());
00765         //      Open a file and read a HDU that contains  specified
00766         //      search keywords with [optional] specified values
00767         //      (sometimes one just wants to know that the keyword is present).
00768         //
00769         //      Optional parameters allows the reading of specified primary HDU keys and specified keywords in
00770         //      the HDU of interest.
00771         void read (const std::vector<String>& searchKeys, const std::vector<String> &searchValues, bool readDataFlag = false, const std::vector<String>& hduKeys = std::vector<String>(), int version = 1);
00772         const ExtHDU& extension (int i) const;
00773         fitsfile* fitsPointer () const;
00774         ExtHDU& extension (int i);
00775         const ExtHDU& extension (const String& hduName, int version = 1) const;
00776         const PHDU& pHDU () const;
00777         PHDU& pHDU ();
00778         ExtHDU& extension (const String& hduName, int version = 1);
00779         friend std::ostream& operator << (std::ostream& s, const FITS& right);
00780         //      ! add a new Table extension to a FITS object
00781         Table* addTable (const String& hduName, int rows,       // ! Number of rows in new table. Mandatory
00782         const std::vector<String>& columnName = std::vector<String>(),  // ! Optional set of column names for new table
00783         const std::vector<String>& columnFmt = std::vector<String>(),   // ! Column formats for column units. Mandatory if columnName is specified
00784         const std::vector<String>& columnUnit = std::vector<String>(),  // ! Column formats for column units. Optional
00785         HduType type = BinaryTbl, int version = 1);
00786         //      ! add a new ImageExt (image extension) to the FITS object. A "writing" method.
00787         ExtHDU* addImage (const String& hduName, int bpix, std::vector<long>& naxes, int version = 1);
00788         //      Force destruction of the FITS object. Essentially
00789         //      is a manual destructor call.
00790         void destroy () throw ();
00791         void flush ();
00792         const String& currentExtensionName () const;
00793         const ExtMap& extension () const;
00794         void resetPosition ();
00795         void currentExtensionName (const String& extName);
00796         const String& name () const;
00797         void copy (const HDU& source);
00798         Table& filter (const String& expression, ExtHDU& inputTable, bool overwrite = true, bool readData = false);
00799         ExtHDU& currentExtension ();
00800         void deleteExtension (int doomed);
00801         void setCompressionType (int compType);
00802         void setTileDimensions (const std::vector<long>& tileSizes);
00803         void setNoiseBits (int noiseBits);
00804         int getCompressionType () const;
00805         void getTileDimensions (std::vector<long>& tileSizes) const;
00806         int getNoiseBits () const;
00807         static bool verboseMode ();
00808         static void setVerboseMode (bool value);
00809 
00810     public:
00811       // Additional Public Declarations
00812 
00813     protected:
00814       // Additional Protected Declarations
00815 
00816     private:
00817         FITS(const FITS &right);
00818         FITS & operator=(const FITS &right);
00819 
00820         void unmapExtension (ExtHDU& doomed);
00821         int nextVersionNumber (const String& inputName) const;
00822         //      read the primary HDU. Read the image if
00823         //      readDataFlag is true.
00824         void read (bool readDataFlag = false, const std::vector<String>& keys = std::vector<String>());
00825         //      Returns index of current HDU where primary = 0.  (Extended file syntax may cause a shift to an
00826         //      extension.)
00827         int open (RWmode mode = Read);
00828         //      Create returns true if a new file was created or an
00829         //      existing file overwritten, false if appending.
00830         //
00831         //
00832         //      It throws exception CantCreate or CantOpen if either fails.
00833         bool create ();
00834         //      Close the fits file.
00835         //
00836         //      Called in destructors so must not throw.
00837         int close () throw ();
00838         std::ostream & put (std::ostream &s) const;
00839         ExtHDU& extbyVersion (const String& hduName, int version) const;
00840         void pHDU (PHDU* value);
00841         void readExtensions (bool readDataFlag = false);
00842         ExtHDU* addExtension (ExtHDU* ext);
00843         void swap (FITS& right);
00844         ExtMap& extensionMap ();
00845         String nameOfUnmapped (int hduNum) const;
00846         void cloneHeader (const ExtHDU& source);
00847 
00848         // Check if caller is requesting an already read ExtHDU (ie. one
00849         // that's already been added to ExtMap).  If hduIdx=0, check by
00850         // matching name and optional version.  Otherwise check by matching
00851         // hduIdx.  If found, returns pointer to the ExtHDU.  Otherwise
00852         // returns 0.  This will not throw.
00853         ExtHDU* checkAlreadyRead(const int hduIdx, 
00854                     const String& hduName = string(""), const int version=1) const throw();
00855 
00856       // Additional Private Declarations
00857 
00858     private: //## implementation
00859       // Data Members for Class Attributes
00860         static bool s_verboseMode;
00861 
00862       // Data Members for Associations
00863         FITSBase* m_FITSImpl;
00864 
00865       // Additional Implementation Declarations
00866       friend void HDU::makeThisCurrent() const;
00867   };
00868 
00869   // Class CCfits::FITS::NoSuchHDU 
00870 
00871   // Class CCfits::FITS::OperationNotSupported 
00872 
00873   // Class CCfits::FITS::CantOpen 
00874 
00875   // Class CCfits::FITS::CantCreate 
00876 
00877   // Class CCfits::FITS 
00878 
00879   inline ExtHDU& FITS::extension (const String& hduName, int version)
00880   {
00881 
00882     return extbyVersion(hduName,version);
00883   }
00884 
00885   inline std::ostream& operator << (std::ostream& s, const FITS& right)
00886   {
00887 
00888     return right.put(s);
00889   }
00890 
00891   inline bool FITS::verboseMode ()
00892   {
00893     return s_verboseMode;
00894   }
00895 
00896   inline void FITS::setVerboseMode (bool value)
00897   {
00898     s_verboseMode = value;
00899   }
00900 
00901 } // namespace CCfits
00902 
00903 
00904 #endif
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/FITSBase_8h_source.html0000644000225700000360000002402711667502524016705 0ustar cagordonlhea CCfits: FITSBase.h Source File
CCfits  2.4
FITSBase.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef FITSBASE_H
00010 #define FITSBASE_H 1
00011 
00012 // fitsio
00013 #include "fitsio.h"
00014 // string
00015 #include <string>
00016 // map
00017 #include <map>
00018 // CCfitsHeader
00019 #include "CCfits.h"
00020 
00021 namespace CCfits {
00022   class PHDU;
00023   class ExtHDU;
00024 
00025 } // namespace CCfits
00026 using std::string;
00027 
00028 
00029 namespace CCfits {
00030 
00031 
00032 
00033   class FITSBase 
00034   {
00035 
00036     public:
00037         FITSBase (const String& fileName, RWmode rwmode);
00038         ~FITSBase();
00039 
00040         void destroyPrimary ();
00041         void destroyExtensions ();
00042         int currentCompressionTileDim () const;
00043         void currentCompressionTileDim (int value);
00044         RWmode mode ();
00045         std::string& currentExtensionName ();
00046         std::string& name ();
00047         PHDU*& pHDU ();
00048         ExtMap& extension ();
00049 
00050         const ExtMap& extension() const;
00051         fitsfile*& fptr ();
00052 
00053       // Additional Public Declarations
00054 
00055     protected:
00056       // Additional Protected Declarations
00057 
00058     private:
00059         FITSBase(const FITSBase &right);
00060         FITSBase & operator=(const FITSBase &right);
00061 
00062       // Additional Private Declarations
00063 
00064     private: //## implementation
00065       // Data Members for Class Attributes
00066         int m_currentCompressionTileDim;
00067 
00068       // Data Members for Associations
00069         RWmode m_mode;
00070         std::string m_currentExtensionName;
00071         std::string m_name;
00072         PHDU* m_pHDU;
00073         ExtMap m_extension;
00074         fitsfile* m_fptr;
00075 
00076       // Additional Implementation Declarations
00077 
00078   };
00079 
00080   // Class CCfits::FITSBase 
00081 
00082   inline int FITSBase::currentCompressionTileDim () const
00083   {
00084     return m_currentCompressionTileDim;
00085   }
00086 
00087   inline void FITSBase::currentCompressionTileDim (int value)
00088   {
00089     m_currentCompressionTileDim = value;
00090   }
00091 
00092   inline RWmode FITSBase::mode ()
00093   {
00094     return m_mode;
00095   }
00096 
00097   inline std::string& FITSBase::currentExtensionName ()
00098   {
00099     return m_currentExtensionName;
00100   }
00101 
00102   inline std::string& FITSBase::name ()
00103   {
00104     return m_name;
00105   }
00106 
00107   inline PHDU*& FITSBase::pHDU ()
00108   {
00109     return m_pHDU;
00110   }
00111 
00112   inline ExtMap& FITSBase::extension ()
00113   {
00114     return m_extension;
00115   }
00116 
00117   inline const ExtMap& FITSBase::extension() const
00118   {
00119      return m_extension;
00120   }
00121 
00122   inline fitsfile*& FITSBase::fptr ()
00123   {
00124     return m_fptr;
00125   }
00126 
00127 } // namespace CCfits
00128 
00129 
00130 #endif
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/FitsError_8h_source.html0000644000225700000360000002227711667502524017271 0ustar cagordonlhea CCfits: FitsError.h Source File
CCfits  2.4
FitsError.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef FITSERROR_H
00010 #define FITSERROR_H 1
00011 #include <exception>
00012 #include <iostream>
00013 //#include <exception>
00014 //#include <iostream>
00015 //#include <stl.h>
00016 #include <string>
00017 using std::string;
00018 
00019 
00020 namespace CCfits {
00021 
00088   //    Base class for exceptions generated by CCfits that don't
00089   //    return FITS error codes (for example, array errors or seek errors).
00090 
00091 
00092 
00093   class FitsException 
00094   {
00095     public:
00096         FitsException (const string& msg, bool& silent);
00097 
00098         const string& message () const;
00099 
00100     protected:
00101         void addToMessage (const string& msgQual);
00102 
00103     private:
00104     private: //## implementation
00105       // Data Members for Class Attributes
00106         string m_message;
00107 
00108   };
00109 
00110 
00111 
00112   class FitsError : public FitsException  //## Inherits: <unnamed>%399170BD017D
00113   {
00114     public:
00115         FitsError (int errornum, bool silent = true);
00116 
00117     protected:
00118     private:
00119         void printMsg (int error);
00120 
00121     private: //## implementation
00122   };
00123 
00124 
00125 
00126   class FitsFatal 
00127   {
00128     public:
00129         FitsFatal (const string& diag);
00130 
00131     protected:
00132     private:
00133     private: //## implementation
00134   };
00135 
00136   // Class CCfits::FitsException 
00137 
00138   inline const string& FitsException::message () const
00139   {
00140      return m_message;
00141   }
00142 
00143   // Class CCfits::FitsError 
00144 
00145   // Class CCfits::FitsFatal 
00146 
00147 } // namespace CCfits
00148 
00149 
00150 #endif
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/FITSUtil_8h_source.html0000644000225700000360000022412111667502524016745 0ustar cagordonlhea CCfits: FITSUtil.h Source File
CCfits  2.4
FITSUtil.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef FITSUTIL_H
00010 #define FITSUTIL_H 1
00011 #include "CCfits.h"
00012 
00013 // functional
00014 #include <functional>
00015 // complex
00016 #include <complex>
00017 // valarray
00018 #include <valarray>
00019 // vector
00020 #include <vector>
00021 // string
00022 #include <string>
00023 // FitsError
00024 #include "FitsError.h"
00025 #include <typeinfo>
00026 
00027 
00028 namespace CCfits {
00029 
00030   namespace FITSUtil {
00031 
00280 #ifdef _MSC_VER
00281 #include "MSconfig.h" // for truncation double to float warning
00282 #endif
00283 
00284      template <typename T>
00285     void swap(T& left,T& right);
00286 
00287     template <typename T>
00288     void swap(std::vector<T>& left, std::vector<T>& right);
00289 
00290     string lowerCase(const string& inputString);
00291 
00292     string upperCase(const string& inputString);
00293 
00294   // Check if a file name includes an image compression specifier,
00295   // and return its location if it exists.
00296     string::size_type checkForCompressString(const string& fileName);
00297 
00298   struct InvalidConversion : public FitsException
00299   {
00300                 InvalidConversion(const string& diag, bool silent=false);
00301 
00302   };
00303 
00304   struct MatchStem : public std::binary_function<string,string,bool>
00305   {
00306           bool operator()(const string& left, const string& right) const;
00307   };
00308 
00309   static const  double d1(0);
00310   static const  float  f1(0);
00311   static const  std::complex<float> c1(0.);
00312   static const  std::complex<double> d2(0.);
00313   static const  string s1("");
00314   static const  int    i1(0);
00315   static const  unsigned int  u1(0);        
00316   static const  long l1(0);
00317   static const  unsigned long ul1(0);
00318   static const  LONGLONG ll1(0);
00319   static const  short s2(0);
00320   static const  unsigned short us1(0); 
00321   static const  bool b1(false);
00322   static const  unsigned char b2(0);  
00323 
00324   char** CharArray(const std::vector<string>& inArray);
00325 
00326   string FITSType2String( int typeInt );
00327 
00328 
00329   template <typename S, typename T> 
00330   void fill(std::vector<S>& outArray, const std::vector<T>& inArray,size_t first, size_t last);
00331 
00332   template <typename S, typename T> 
00333   void fill(std::valarray<S>& outArray, const std::valarray<T>& inArray);
00334 
00335   template <typename S, typename T> 
00336   void fill(std::valarray<S>& outArray, const std::vector<T>& inArray,size_t first, size_t last);
00337 
00338 
00339   template <typename S, typename T> 
00340   void fill(std::vector<S>& outArray, const std::valarray<T>& inArray);
00341 
00342   // VF<-AF
00343    void fill(std::vector<std::complex<float> >& outArray, 
00344                   const std::valarray<std::complex<float> >& inArray);
00345 
00346   // VF<-AD
00347   void fill(std::vector<std::complex<float> >& outArray, 
00348                   const std::valarray<std::complex<double> >& inArray);
00349 
00350   // VD<-AD
00351   void fill(std::vector<std::complex<double> >& outArray, 
00352                   const std::valarray<std::complex<double> >& inArray);
00353 
00354 
00355   // VD<-AF
00356   void fill(std::vector<std::complex<double> >& outArray, 
00357                   const std::valarray<std::complex<float> >& inArray);
00358 
00359   template <typename T>
00360   void fill(std::vector<string>& outArray, const std::vector<T>& inArray, size_t first, size_t last);
00361 
00362   template <typename T>
00363   void fill(std::vector<T>& outArray, const std::vector<string>& inArray, size_t first, size_t last);
00364 
00365   template <typename S> 
00366   void fill(std::valarray<S>& outArray, const std::vector<string>& inArray,size_t first, size_t last);
00367 
00368 //  template <typename S, typename T>
00369 //  void fill(std::valarray<std::complex<S> >& outArray, const std::valarray<std::complex<T> >& inArray);            
00370   // seems no other way of doing this.
00371 
00372   // VF<-VF
00373 #ifdef TEMPLATE_AMBIG_DEFECT
00374   void fillMSvfvf(std::vector<std::complex<float> >& outArray, 
00375                   const std::vector<std::complex<float> >& inArray, size_t first, size_t last);
00376 #endif
00377 
00378   void fill(std::vector<std::complex<float> >& outArray, 
00379                   const std::vector<std::complex<float> >& inArray, size_t first, size_t last);
00380 
00381   // VF<-VD
00382 #ifdef TEMPLATE_AMBIG_DEFECT
00383     void fillMSvfvd(std::vector<std::complex<float> >& outArray, 
00384                   const std::vector<std::complex<double> >& inArray, size_t first, size_t last);
00385 #endif
00386 
00387    void fill(std::vector<std::complex<float> >& outArray, 
00388                   const std::vector<std::complex<double> >& inArray, size_t first, size_t last);
00389 
00390    // VD<-VD
00391 #ifdef TEMPLATE_AMBIG_DEFECT
00392  void fillMSvdvd(std::vector<std::complex<double> >& outArray, 
00393                   const std::vector<std::complex<double> >& inArray, size_t first, size_t last);
00394 #endif
00395 
00396    void fill(std::vector<std::complex<double> >& outArray, 
00397                   const std::vector<std::complex<double> >& inArray, size_t first, size_t last);
00398 
00399 #ifdef TEMPLATE_AMBIG_DEFECT
00400   void fillMSvdvf(std::vector<std::complex<double> >& outArray, 
00401                                 const std::vector<std::complex<float> >& inArray, 
00402                         size_t first, size_t last);
00403 #else
00404   void fill(std::vector<std::complex<double> >& outArray, 
00405                   const std::vector<std::complex<float> >& inArray, size_t first, size_t last);
00406 #endif
00407 
00408   // AF<-VD
00409   void fill(std::valarray<std::complex<float> >& outArray, 
00410                   const std::vector<std::complex<double> >& inArray, size_t first, size_t last);
00411 
00412   // AF<-VF
00413 #ifdef TEMPLATE_AMBIG_DEFECT
00414  void fillMSafvf(std::valarray<std::complex<float> >& outArray, 
00415                   const std::vector<std::complex<float> >& inArray, size_t first, size_t last);
00416 #else
00417  void fill(std::valarray<std::complex<float> >& outArray, 
00418                   const std::vector<std::complex<float> >& inArray, size_t first, size_t last);
00419 #endif
00420 
00421  // AD<-VF
00422 #ifdef TEMPLATE_AMBIG_DEFECT
00423   void fillMSadvf(std::valarray<std::complex<double> >& outArray, 
00424                   const std::vector<std::complex<float> >& inArray, size_t first, size_t last);
00425 #else
00426   void fill(std::valarray<std::complex<double> >& outArray, 
00427                   const std::vector<std::complex<float> >& inArray, size_t first, size_t last);
00428 #endif
00429 
00430   // AD<-VD
00431 #ifdef TEMPLATE_AMBIG_DEFECT
00432   void fillMSadvd(std::valarray<std::complex<double> >& outArray, 
00433                   const std::vector<std::complex<double> >& inArray, size_t first, size_t last);
00434 #else
00435   void fill(std::valarray<std::complex<double> >& outArray, 
00436                   const std::vector<std::complex<double> >& inArray, size_t first, size_t last);
00437 #endif
00438 
00439   // AF<-AF
00440   void fill(std::valarray<std::complex<float> >& outArray,  
00441                   const std::valarray<std::complex<float> >& inArray);
00442   // AD<-AD
00443   void fill(std::valarray<std::complex<double> >& outArray,  
00444                   const std::valarray<std::complex<double> >& inArray);
00445   // AF<-AD
00446   void fill(std::valarray<std::complex<float> >& outArray, 
00447                   const std::valarray<std::complex<double> >& inArray);
00448   // AD<-AF
00449   void fill(std::valarray<std::complex<double> >& outArray,  
00450                   const std::valarray<std::complex<float> >& inArray);
00451 
00452 #if TEMPLATE_AMBIG_DEFECT || TEMPLATE_AMBIG7_DEFECT
00453   void fillMSvsvs(std::vector<string>& outArray, const std::vector<string>& inArray, size_t first, size_t last);
00454 #endif
00455 
00456 
00457   void fill(std::vector<string>& outArray, const std::vector<string>& inArray, size_t first, size_t last);
00458 
00459   template <typename S, typename T>
00460   string errorMessage(const S& out, const T& in);
00461 
00462 
00463 
00464     template <class T>
00465     struct MatchPtrName : public std::binary_function<T,std::string,bool>  //## Inherits: <unnamed>%39491BC9025D
00466     {
00467           //    Parameterized Class MatchPtrName
00468           bool operator () (const T& left, const string& right) const;
00469 
00470       public:
00471       protected:
00472       private:
00473       private: //## implementation
00474     };
00475 
00476 
00477 
00478     template <class T>
00479     struct MatchName : public std::binary_function<T,std::string,bool>  //## Inherits: <unnamed>%39491BC50121
00480     {
00481           bool operator () (const T& left, const string& right) const;
00482 
00483       public:
00484       protected:
00485       private:
00486       private: //## implementation
00487     };
00488 
00489 
00490 
00491     template <class T>
00492     struct MatchNum : public std::binary_function<T,int,bool>  //## Inherits: <unnamed>%39491BCE01C0
00493     {
00494           bool operator () (const T& left, const int& right) const;
00495 
00496       public:
00497       protected:
00498       private:
00499       private: //## implementation
00500     };
00501 
00502 
00503 
00504     template <typename T>
00505     struct MatchType 
00506     {
00507           ValueType operator () ();
00508 
00509       public:
00510       protected:
00511       private:
00512       private: //## implementation
00513     };
00514 
00515 
00516 
00517     template <typename T>
00518     struct CVarray 
00519     {
00520           T* operator () (const std::vector<T>& inArray);
00521 
00522       public:
00523       protected:
00524       private:
00525       private: //## implementation
00526     };
00527 
00528 
00529 
00530     template <typename T>
00531     struct FitsNullValue 
00532     {
00533           T operator () ();
00534 
00535       public:
00536       protected:
00537       private:
00538       private: //## implementation
00539     };
00540 
00541 
00542 
00543     template <typename T>
00544     struct MatchImageType 
00545     {
00546           ImageType operator () ();
00547 
00548       public:
00549       protected:
00550       private:
00551       private: //## implementation
00552     };
00553 
00554 
00555 
00556     template <class T>
00557     struct MatchPtrNum : public std::binary_function<T,int,bool>  //## Inherits: <unnamed>%39491BD3034B
00558     {
00559           bool operator () (const T& left, const int& right) const;
00560 
00561       public:
00562       protected:
00563       private:
00564       private: //## implementation
00565     };
00566     //  auto_ptr analogue for arrays.
00567 
00568 
00569 
00570     template <typename X>
00571     class auto_array_ptr 
00572     {
00573       public:
00574           explicit auto_array_ptr (X* p = 0) throw ();
00575           explicit auto_array_ptr (auto_array_ptr<X>& right) throw ();
00576           ~auto_array_ptr();
00577 
00578           void operator = (auto_array_ptr<X>& right);
00579           X& operator * () throw ();
00580           X& operator [] (size_t i) throw ();
00581           X operator [] (size_t i) const throw ();
00582           X* get () const;
00583           X* release () throw ();
00584           X* reset (X* p) throw ();
00585           static void remove (X*& x);
00586 
00587       protected:
00588       private:
00589       private: //## implementation
00590         // Data Members for Class Attributes
00591           X* m_p;
00592 
00593     };
00594 
00595 
00596 
00597     template <typename T>
00598     struct ComparePtrIndex : public std::binary_function<T,T,bool>  //## Inherits: <unnamed>%3B24DB930299
00599     {
00600           bool operator () (const T* left, const T* right);
00601 
00602       public:
00603       protected:
00604       private:
00605       private: //## implementation
00606     };
00607 
00608 
00609 
00610     template <typename T>
00611     struct CAarray 
00612     {
00613           T* operator () (const std::valarray<T>& inArray);
00614 
00615       public:
00616       protected:
00617       private:
00618       private: //## implementation
00619     };
00620 
00621 
00622 
00623     template <typename T>
00624     struct CVAarray 
00625     {
00626           T* operator () (const std::vector< std::valarray<T> >& inArray);
00627 
00628       public:
00629       protected:
00630       private:
00631       private: //## implementation
00632     };
00633 
00634 
00635 
00636     class UnrecognizedType : public FitsException  //## Inherits: <unnamed>%3CE143AB00C6
00637     {
00638       public:
00639           UnrecognizedType (string diag, bool silent = true);
00640 
00641       protected:
00642       private:
00643       private: //## implementation
00644     };
00645 
00646     // Parameterized Class CCfits::FITSUtil::MatchPtrName 
00647 
00648     template <class T>
00649     inline bool MatchPtrName<T>::operator () (const T& left, const string& right) const
00650     {
00651        return left->name() == right;
00652     }
00653 
00654     // Parameterized Class CCfits::FITSUtil::MatchName 
00655 
00656     template <class T>
00657     inline bool MatchName<T>::operator () (const T& left, const string& right) const
00658     {
00659        return left.name() == right;
00660     }
00661 
00662     // Parameterized Class CCfits::FITSUtil::MatchNum 
00663 
00664     template <class T>
00665     inline bool MatchNum<T>::operator () (const T& left, const int& right) const
00666     {
00667     return left.index() == right;
00668     }
00669 
00670     // Parameterized Class CCfits::FITSUtil::MatchType 
00671 
00672     // Parameterized Class CCfits::FITSUtil::CVarray 
00673 
00674     template <typename T>
00675     inline T* CVarray<T>::operator () (const std::vector<T>& inArray)
00676     {
00677 
00678       // convert std containers used commonly in FITS to C arrays in an exception
00679       // safe manner that is also clear about resource ownership.      
00680       auto_array_ptr<T> pC(new T[inArray.size()]);
00681       T* c = pC.get();
00682       std::copy(inArray.begin(),inArray.end(),&c[0]);
00683       return pC.release();
00684     }
00685 
00686     // Parameterized Class CCfits::FITSUtil::FitsNullValue 
00687 
00688     template <typename T>
00689     inline T FitsNullValue<T>::operator () ()
00690     {
00691        // This works for int types.  Float, complex, and string types 
00692        //   are handled below with specialized templates.
00693        return 0;
00694     }
00695 
00696     // Parameterized Class CCfits::FITSUtil::MatchImageType 
00697 
00698     // Parameterized Class CCfits::FITSUtil::MatchPtrNum 
00699 
00700     template <class T>
00701     inline bool MatchPtrNum<T>::operator () (const T& left, const int& right) const
00702     {
00703     return left->index() == right;
00704     }
00705 
00706     // Parameterized Class CCfits::FITSUtil::auto_array_ptr 
00707 
00708     // Parameterized Class CCfits::FITSUtil::ComparePtrIndex 
00709 
00710     // Parameterized Class CCfits::FITSUtil::CAarray 
00711 
00712     // Parameterized Class CCfits::FITSUtil::CVAarray 
00713 
00714     // Class CCfits::FITSUtil::UnrecognizedType 
00715 
00716     // Parameterized Class CCfits::FITSUtil::MatchPtrName 
00717 
00718     // Parameterized Class CCfits::FITSUtil::MatchName 
00719 
00720     // Parameterized Class CCfits::FITSUtil::MatchNum 
00721 
00722     // Parameterized Class CCfits::FITSUtil::MatchType 
00723 
00724     template <typename T>
00725     ValueType MatchType<T>::operator () ()
00726     {
00727 
00728     if ( typeid(T) == typeid(d1) ) return Tdouble;
00729     if ( typeid(T) == typeid(f1) ) return Tfloat;
00730     if ( typeid(T) == typeid(c1) ) return Tcomplex;
00731     if ( typeid(T) == typeid(d2) ) return Tdblcomplex;
00732     if ( typeid(T) == typeid(s1) ) return Tstring;
00733     if ( typeid(T) == typeid(i1) ) return Tint;
00734     if ( typeid(T) == typeid(u1) ) return Tuint;
00735     if ( typeid(T) == typeid(s2) ) return Tshort;
00736     if ( typeid(T) == typeid(us1) ) return Tushort;
00737     if ( typeid(T) == typeid(b1) ) return Tlogical;
00738     if ( typeid(T) == typeid(b2) ) return Tbyte;
00739     if ( typeid(T) == typeid(l1) ) return Tlong;
00740     if ( typeid(T) == typeid(ul1) ) return Tulong;
00741     // Carefull, on some compilers LONGLONG == long,
00742     // so this should go after test for long.
00743     if ( typeid(T) == typeid(ll1) ) return Tlonglong;
00744     throw UnrecognizedType("Invalid data type for FITS Data I/O\n");    
00745     }
00746 
00747     // Parameterized Class CCfits::FITSUtil::CVarray 
00748 
00749     // Parameterized Class CCfits::FITSUtil::MatchImageType 
00750 
00751     template <typename T>
00752     ImageType MatchImageType<T>::operator () ()
00753     {
00754     if ( typeid(T) == typeid(b2) ) return Ibyte;    
00755     if ( typeid(T) == typeid(s2) ) return Ishort;
00756     if ( typeid(T) == typeid(l1) ) return Ilong;
00757     if ( typeid(T) == typeid(f1) ) return Ifloat;
00758     if ( typeid(T) == typeid(d1) ) return Idouble;
00759     if ( typeid(T) == typeid(us1) ) return Iushort;
00760     if ( typeid(T) == typeid(ul1) ) return Iulong;
00761     MatchType<T> errType;
00762     string diag ("Image: ");
00763     diag += FITSType2String(errType());
00764     throw UnrecognizedType(diag);        
00765     }
00766 
00767     // Parameterized Class CCfits::FITSUtil::MatchPtrNum 
00768 
00769     // Parameterized Class CCfits::FITSUtil::auto_array_ptr 
00770 
00771     template <typename X>
00772     auto_array_ptr<X>::auto_array_ptr (X* p) throw ()
00773           : m_p(p)
00774     {
00775     }
00776 
00777     template <typename X>
00778     auto_array_ptr<X>::auto_array_ptr (auto_array_ptr<X>& right) throw ()
00779           : m_p(right.release())
00780     {
00781     }
00782 
00783 
00784     template <typename X>
00785     auto_array_ptr<X>::~auto_array_ptr()
00786     {
00787       delete [] m_p;
00788     }
00789 
00790 
00791     template <typename X>
00792     void auto_array_ptr<X>::operator = (auto_array_ptr<X>& right)
00793     {
00794       if (this != &right)
00795       {
00796                 remove(m_p);
00797                 m_p = right.release();       
00798       }
00799     }
00800 
00801     template <typename X>
00802     X& auto_array_ptr<X>::operator * () throw ()
00803     {
00804       return *m_p;
00805     }
00806 
00807     template <typename X>
00808     X& auto_array_ptr<X>::operator [] (size_t i) throw ()
00809     {
00810       return m_p[i];
00811     }
00812 
00813     template <typename X>
00814     X auto_array_ptr<X>::operator [] (size_t i) const throw ()
00815     {
00816       return m_p[i];
00817     }
00818 
00819     template <typename X>
00820     X* auto_array_ptr<X>::get () const
00821     {
00822       return m_p;
00823     }
00824 
00825     template <typename X>
00826     X* auto_array_ptr<X>::release () throw ()
00827     {
00828       return reset(0);
00829     }
00830 
00831     template <typename X>
00832     X* auto_array_ptr<X>::reset (X* p) throw ()
00833     {
00834       // set the auto_ptr to manage p and return the old pointer it was managing.
00835       X* __tmp = m_p; 
00836       m_p = p;
00837       return __tmp;
00838     }
00839 
00840     template <typename X>
00841     void auto_array_ptr<X>::remove (X*& x)
00842     {
00843       X* __tmp(x);
00844       x = 0;
00845       delete [] __tmp;
00846     }
00847 
00848     // Parameterized Class CCfits::FITSUtil::ComparePtrIndex 
00849 
00850     template <typename T>
00851     bool ComparePtrIndex<T>::operator () (const T* left, const T* right)
00852     {
00853       return (left->index() < right->index());
00854     }
00855 
00856     // Parameterized Class CCfits::FITSUtil::CAarray 
00857 
00858     template <typename T>
00859     T* CAarray<T>::operator () (const std::valarray<T>& inArray)
00860     {
00861       size_t n(inArray.size());
00862       auto_array_ptr<T> pC(new T[n]);
00863       T* c= pC.get();
00864       for (size_t j = 0; j < n; ++j) c[j] = inArray[j];
00865       return pC.release();      
00866     }
00867 
00868     // Parameterized Class CCfits::FITSUtil::CVAarray 
00869 
00870     template <typename T>
00871     T* CVAarray<T>::operator () (const std::vector< std::valarray<T> >& inArray)
00872     {
00873       size_t  sz(0);
00874       size_t  n(inArray.size());
00875 
00876       std::vector<size_t> nr(n);
00877 
00878       size_t i = 0; // for MS VC++ bug
00879       for ( i = 0; i < n; ++i)
00880       {
00881          nr[i] = inArray[i].size();
00882          sz += nr[i];
00883 
00884       }
00885       auto_array_ptr<T> pC(new T[sz]);
00886       T* c = pC.get();
00887 
00888       size_t k(0);
00889       for ( i = 0; i < n; ++i)
00890       {
00891          size_t& m = nr[i];
00892          const std::valarray<T>& current = inArray[i];
00893          for (size_t j=0; j < m ; ++j) c[k++] = current[j];
00894       }
00895 
00896       return pC.release();      
00897     }
00898 
00899   } // namespace FITSUtil
00900 } // namespace CCfits
00901 
00902 namespace CCfits
00903 {
00904 
00905    namespace FITSUtil
00906    {                
00907 
00908       template <typename T>
00909       void swap(T& left, T& right)
00910       {
00911               T temp(left);
00912               left = right;
00913               right = temp;                
00914       }
00915 
00916       template <typename T>
00917       void swap(std::vector<T>& left, std::vector<T>& right)
00918       {
00919               left.swap(right);        
00920       }
00921 
00922       template <>
00923       inline string FitsNullValue<string>::operator () ()
00924       {
00925          return string("");
00926       }
00927       
00928       template <>
00929       inline float FitsNullValue<float>::operator () ()
00930       {
00931          return FLOATNULLVALUE;
00932       }
00933 
00934       template <>
00935       inline double FitsNullValue<double>::operator () ()
00936       {
00937          return DOUBLENULLVALUE;
00938       }
00939       
00940       template <>
00941       inline std::complex<float> FitsNullValue<std::complex<float> >::operator () ()
00942       {
00943          return std::complex<float>(FLOATNULLVALUE);
00944       }
00945 
00946       template <>
00947       inline std::complex<double> FitsNullValue<std::complex<double> >::operator () ()
00948       {
00949          return std::complex<double>(DOUBLENULLVALUE);
00950       }
00951       
00952    } // end namespace FITSUtil
00953 } // end namespace CCfits
00954 
00955 
00956 
00957 #endif
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/FITSUtilT_8h_source.html0000644000225700000360000003555511667502524017104 0ustar cagordonlhea CCfits: FITSUtilT.h Source File
CCfits  2.4
FITSUtilT.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef FITSUTILT_H
00010 #define FITSUTILT_H
00011 
00012 #ifdef _MSC_VER
00013 #include "MSconfig.h" // for truncation warning
00014 #endif
00015 
00016 #ifdef HAVE_CONFIG_H
00017 #include "config.h"
00018 #endif
00019 
00020 #include "FITSUtil.h"
00021 
00022 #include<typeinfo>
00023 #include<iostream>
00024 
00025 #ifdef SSTREAM_DEFECT
00026 #include <strstream>
00027 #else
00028 #include<sstream>
00029 #endif
00030 
00031 namespace CCfits
00032 {
00033 
00034         namespace FITSUtil
00035         {
00036 
00037                 // vector to vector conversion.
00038 
00039                 template <typename S, typename T> 
00040                 void 
00041                 fill(std::vector<S>& outArray, const std::vector<T>& inArray, size_t first, size_t last)
00042                 {
00043                         // vector to vector assign. stdlib takes care of deletion.
00044                         int range = last - first + 1;
00045                         if (outArray.size() != static_cast<size_t>(range)) outArray.resize(range);
00046                         for (size_t j = first - 1; j < last; ++j)
00047                         {
00048                                 outArray[j - first + 1] = static_cast<S>(inArray[j]);
00049                         }
00050                 }  
00051 
00052                 // vector to valarray conversion. 
00053 
00054                 template <typename S, typename T> 
00055                 void fill(std::valarray<S>& outArray, const std::vector<T>& inArray, size_t first, size_t last)
00056                 {
00057                         // vector to valarray assign
00058                         int range = last - first + 1;
00059                         if (outArray.size() != static_cast<size_t>(range)) outArray.resize(range); 
00060                         for (size_t j = first - 1; j < last; ++j)
00061                         {
00062                                 outArray[j - first + 1] = static_cast<S>(inArray[j]);
00063                         }
00064                 }
00065                 // valarray to valarray conversion.
00066 
00067 
00068                 template <typename S, typename T> 
00069                 void fill(std::valarray<S>& outArray, const std::valarray<T>& inArray)
00070                 {
00071                          size_t n = inArray.size();
00072                          if (outArray.size() !=  n) outArray.resize(n);           
00073                          for (size_t j = 0;j < n; ++j) outArray[j] 
00074                                  = static_cast<S>(inArray[j]);
00075                 }
00076 
00077 #ifdef TEMPLATE_AMBIG7_DEFECT
00078                 template <typename S, typename T> 
00079                 void fillMSva(std::vector<S>& outArray, const std::valarray<T>& inArray)
00080                 {
00081                          size_t n = inArray.size();
00082                          if (outArray.size() !=  n) outArray.resize(n);           
00083                          for (size_t j = 0;j < n; ++j) outArray[j] 
00084                                  = static_cast<S>(inArray[j]);
00085                 }
00086 
00087 #else
00088                 template <typename S, typename T> 
00089                 void fill(std::vector<S>& outArray, const std::valarray<T>& inArray)
00090                 {
00091                          size_t n = inArray.size();
00092                          if (outArray.size() !=  n) outArray.resize(n);           
00093                          for (size_t j = 0;j < n; ++j) outArray[j] 
00094                                  = static_cast<S>(inArray[j]);
00095                 }
00096 #endif
00097 
00098                 // throw exceptions for string conversions to anything other than string.
00099 
00100 
00101                 template <typename T> 
00102                 void 
00103                 fill(std::vector<string>& outArray, const std::vector<T>& inArray, size_t first, size_t last)
00104                 {
00105                         first = 0;
00106                         last  = 0;
00107                         throw InvalidConversion(errorMessage(outArray,inArray),false);
00108 
00109                 } 
00110 
00111                 template <typename T> 
00112                 void fill(std::vector<T>& outArray, const std::vector<string>& inArray, size_t first, size_t last)
00113                 {
00114                         first = 0;
00115                         last  = 0;
00116                         throw InvalidConversion(errorMessage(outArray,inArray),false);
00117                 }  
00118 
00119 
00120 
00121 
00122                 template<typename S, typename T>
00123                 string errorMessage( const S& out, const T& in)
00124                 {
00125 #ifdef SSTREAM_DEFECT
00126                         std::ostrstream errMsg;
00127 #else
00128                         std::ostringstream errMsg;
00129 #endif
00130                         errMsg << " Error: no conversion from " << typeid(in).name() << " to "
00131                                << typeid(out).name() << std::endl;
00132                         return errMsg.str();
00133 
00134                 }
00135 
00136         }
00137 
00138 } // namespace CCfits
00139 
00140 
00141 #endif
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/HDU_8h_source.html0000644000225700000360000020323411667502524015764 0ustar cagordonlhea CCfits: HDU.h Source File
CCfits  2.4
HDU.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef HDU_H
00010 #define HDU_H 1
00011 #include <map>
00012 
00013 // vector
00014 #include <vector>
00015 #include <list>
00016 // CCfitsHeader
00017 #include "CCfits.h"
00018 // Keyword
00019 #include "Keyword.h"
00020 // NewKeyword
00021 #include "NewKeyword.h"
00022 // FitsError
00023 #include "FitsError.h"
00024 // FITSUtil
00025 #include "FITSUtil.h"
00026 
00027 namespace CCfits {
00028   class FITS;
00029   class FITSBase;
00030 
00031 } // namespace CCfits
00032 namespace CCfits {
00033    class HDUCreator; // Needed for friend declaration
00034 }
00035 
00036 #ifdef _MSC_VER
00037 #include "MSconfig.h" // for truncation warning
00038 #endif
00039 #include "KeywordT.h"
00040 
00041 
00042 namespace CCfits {
00543   class HDU 
00544   {
00545 
00546     public:
00547 
00548 
00549 
00550       class InvalidImageDataType : public FitsException  //## Inherits: <unnamed>%394FBA12005C
00551       {
00552         public:
00553             InvalidImageDataType (const string& diag, bool silent = true);
00554 
00555         protected:
00556         private:
00557         private: //## implementation
00558       };
00559 
00560 
00561 
00562       class InvalidExtensionType : public FitsException  //## Inherits: <unnamed>%3964C1D00352
00563       {
00564         public:
00565             InvalidExtensionType (const string& diag, bool silent = true);
00566 
00567         protected:
00568         private:
00569         private: //## implementation
00570       };
00571 
00572 
00573 
00574       class NoSuchKeyword : public FitsException  //## Inherits: <unnamed>%398865D10264
00575       {
00576         public:
00577             NoSuchKeyword (const string& diag, bool silent = true);
00578 
00579         protected:
00580         private:
00581         private: //## implementation
00582       };
00583 
00584 
00585 
00586       class NoNullValue : public FitsException  //## Inherits: <unnamed>%3B0D58CE0306
00587       {
00588         public:
00589             NoNullValue (const string& diag, bool silent = true);
00590 
00591         protected:
00592         private:
00593         private: //## implementation
00594       };
00595         HDU(const HDU &right);
00596         bool operator==(const HDU &right) const;
00597 
00598         bool operator!=(const HDU &right) const;
00599 
00600         virtual HDU * clone (FITSBase* p) const = 0;
00601         fitsfile* fitsPointer () const;
00602         FITSBase* parent () const;
00603         //      By all means necessary, set the fitsfile pointer so that
00604         //      this HDU is the current HDU.
00605         //
00606         //      This would appear to be a good candidate for the public
00607         //      interface.
00608         virtual void makeThisCurrent () const;
00609         const String& getComments ();
00610         const string& comment () const;
00611         //      Write a history string. A default value for the string is given
00612         //      "GenericComment" so users can put a placeholder call
00613         //      to this function in their code before knowing quite what should go in it.
00614         void writeComment (const String& comment = "Generic Comment");
00615         const String& getHistory ();
00616         const string& history () const;
00617         //      Write a history string. A default value for the string is given
00618         //      "Generic History String" so users can put a placeholder call
00619         //      to this function in their code before knowing quite what should go in it.
00620         void writeHistory (const String& history = "Generic History String");
00621         //      Write a date card.
00622         void writeDate ();
00623         friend std::ostream& operator << (std::ostream& s, const CCfits::HDU& right);
00624         long axes () const;
00625         long axis (size_t index) const;
00626         void index (int value);
00627         int index () const;
00628         long bitpix () const;
00629         virtual double scale () const;
00630         virtual void scale (double value);
00631         virtual double zero () const;
00632         virtual void zero (double value);
00633         void suppressScaling (bool toggle = true);
00634         void writeChecksum ();
00635         void updateChecksum ();
00636         std::pair<int,int> verifyChecksum () const;
00637         std::pair<unsigned long,unsigned long> getChecksum () const;
00638         void deleteKey (const String& doomed);
00639         void readAllKeys ();
00640         void copyAllKeys (const HDU* inHdu);
00641         std::map<String, Keyword*>& keyWord ();
00642         Keyword& keyWord (const String& keyName);
00643         static std::vector<int> keywordCategories ();
00644         const std::map<string,Keyword*>& keyWord () const;
00645         const Keyword& keyWord (const string& keyname) const;
00646 
00647     public:
00648       // Additional Public Declarations
00649       template <typename T>
00650       void readKey(const String& keyName, T& val);
00651 
00652       template <typename T>
00653       void readKeys(std::vector<String>& keyNames, std::vector<T>& vals);
00654 
00655       template <typename T>
00656       Keyword& addKey(const String& name, T val,  const String& comment);
00657 
00658       // This non-template function could be entered with Rose, but
00659       // it's instead placed with the other addKey function to
00660       // simplify the Doxygen generated doc file output.
00661       Keyword* addKey(const Keyword* inKeyword);
00662 
00663       Keyword& addKey(const String& name, const char* charString, const String& comment);
00664 
00665 #ifdef TEMPLATE_AMBIG_DEFECT
00666       inline void readKeyMS(const String& keyName, int & val);
00667       inline void readKeys(std::vector<String>& keyNames, std::vector<String>& vals);
00668 
00669 #endif
00670     protected:
00671         //      Functions as the default constructor, which is required for
00672         //      the map container class.
00673         HDU (FITSBase* p = 0);
00674         HDU (FITSBase* p, int bitpix, int naxis, const std::vector<long>& axes);
00675         virtual ~HDU();
00676 
00677         Keyword& readKeyword (const String &keyname);
00678         void readKeywords (std::list<String>& keynames);
00679         virtual std::ostream & put (std::ostream &s) const = 0;
00680         void bitpix (long value);
00681         bool checkImgDataTypeChange (double zero, double scale) const;
00682         long& naxis ();
00683         void naxis (const long& value);
00684         //      Flags whether there were any null values found in the
00685         //      last read operation.
00686         bool& anynul ();
00687         void anynul (const bool& value);
00688         FITSBase*& parent ();
00689         std::vector< long >& naxes ();
00690         long& naxes (size_t index);
00691         void naxes (size_t index, const long& value);
00692 
00693       // Additional Protected Declarations
00694 
00695     private:
00696         //      clear the FITS Keyword map. To be called by
00697         //      the dtor and the copy/assignment operations.
00698         void clearKeys ();
00699         virtual void initRead () = 0;
00700         void readHduInfo ();
00701         Keyword* addKeyword (Keyword* newKey);
00702         virtual bool compare (const HDU &right) const;
00703         //      clear the FITS Keyword map. To be called by
00704         //      the dtor and the copy/assignment operations.
00705         void copyKeys (const HDU& right);
00706         String getNamedLines (const String& name);
00707         //      save keyword found by read all keys into the array of keywords that have been read.
00708         //      Similar to addKeyword except there's no write and no returned value. For use by readAllKeys()
00709         void saveReadKeyword (Keyword* newKey);
00710         void zeroInit (double value);
00711         void scaleInit (double value);
00712 
00713       // Additional Private Declarations
00714 
00715     private: //## implementation
00716       // Data Members for Class Attributes
00717         long m_naxis;
00718         long m_bitpix;
00719         int m_index;
00720         bool m_anynul;
00721         string m_history;
00722         string m_comment;
00723         double m_zero;
00724         //      Floating point scale factor for image data that takes
00725         //      the value of the BSCALE parameter.
00726         double m_scale;
00727 
00728       // Data Members for Associations
00729         std::map<string,Keyword*> m_keyWord;
00730         FITSBase* m_parent;
00731         std::vector< long > m_naxes;
00732 
00733       // Additional Implementation Declarations
00734         static const size_t s_nCategories;
00735         static const int s_iKeywordCategories[];
00736 
00737       friend class HDUCreator;        
00738       friend Keyword* KeywordCreator::getKeyword(const String& keyname, HDU* p);
00739       friend Keyword* KeywordCreator::getKeyword(const String& keyname, ValueType keyType, HDU* p);
00740   };
00741   template <typename T>
00742   Keyword& HDU::addKey(const String& name, T value,  const String& comment)
00743   {
00744               makeThisCurrent();
00745               NewKeyword<T> keyCreator(this,value);
00746               Keyword& newKey = *(addKeyword(keyCreator.createKeyword(name,comment)));
00747               return newKey;
00748   } 
00749 
00750   template <typename T>
00751   void HDU::readKey(const String& keyName, T& val)
00752   {
00753           makeThisCurrent();
00754           Keyword& key = readKeyword(keyName);
00755           key.value(val);
00756   }
00757 
00758 
00759   template <typename T>
00760   void HDU::readKeys(std::vector<String>& keyNames, std::vector<T>& vals)
00761   {
00762           size_t nRead = keyNames.size();
00763 
00764           std::list<String> valKeys;
00765           std::list<T>      valList;
00766           for (size_t i = 0; i < nRead; i++) valKeys.push_back(keyNames[i]);
00767           // read all the keys requested, rejecting those that don't exist.
00768 
00769           readKeywords(valKeys);
00770 
00771           // get the values of all of the requested keys, rejecting those of the
00772           // wrong type.
00773 
00774           T current;
00775           std::list<String>::iterator it = valKeys.begin(); 
00776           while (it != valKeys.end())
00777           {
00778                   try
00779                   {
00780                           m_keyWord[*it]->value(current);
00781                           valList.push_back(current);       
00782                           ++it;
00783                   }
00784                   catch ( Keyword::WrongKeywordValueType )
00785                   {
00786                           it = valKeys.erase(it);                         
00787                   }
00788           }
00789 
00790           keyNames.erase(keyNames.begin(),keyNames.end());       
00791 
00792           if (!valList.empty())
00793           {
00794                   if (valList.size() != vals.size()) vals.resize(valList.size());
00795 
00796                   size_t i=0;
00797                   for (typename std::list<T>::const_iterator it1 
00798                                   = valList.begin(); it1 != valList.end(); ++it1,++i)
00799                   {
00800                           vals[i] = *it1;
00801                   }
00802                   for (std::list<String>::const_iterator it1= valKeys.begin(); it1 != valKeys.end(); ++it1)
00803                   {
00804                           keyNames.push_back(*it1);
00805                   }
00806           }
00807 
00808   }
00809 
00810   // Class CCfits::HDU::InvalidImageDataType 
00811 
00812   // Class CCfits::HDU::InvalidExtensionType 
00813 
00814   // Class CCfits::HDU::NoSuchKeyword 
00815 
00816   // Class CCfits::HDU::NoNullValue 
00817 
00818   // Class CCfits::HDU 
00819 
00820   inline const string& HDU::comment () const
00821   {
00822     return m_comment;
00823   }
00824 
00825   inline const string& HDU::history () const
00826   {
00827     return m_history;
00828   }
00829 
00830   inline std::ostream& operator << (std::ostream& s, const CCfits::HDU& right)
00831   {
00832      return right.put(s);
00833   }
00834 
00835   inline long HDU::axes () const
00836   {
00837 
00838     return m_naxis;
00839   }
00840 
00841   inline long HDU::axis (size_t index) const
00842   {
00843 
00844     return m_naxes[index];
00845   }
00846 
00847   inline void HDU::index (int value)
00848   {
00849 
00850     m_index = value;
00851   }
00852 
00853   inline int HDU::index () const
00854   {
00855     return m_index;
00856   }
00857 
00858   inline long HDU::bitpix () const
00859   {
00860     return m_bitpix;
00861   }
00862 
00863   inline void HDU::bitpix (long value)
00864   {
00865     m_bitpix = value;
00866   }
00867 
00868   inline double HDU::scale () const
00869   {
00870     return m_scale;
00871   }
00872 
00873   inline void HDU::scale (double value)
00874   {
00875     m_scale = value;
00876   }
00877 
00878   inline double HDU::zero () const
00879   {
00880     return m_zero;
00881   }
00882 
00883   inline void HDU::zero (double value)
00884   {
00885     m_zero = value;
00886   }
00887 
00888   inline void HDU::saveReadKeyword (Keyword* newKey)
00889   {
00890     m_keyWord.insert(std::map<String,Keyword*>::value_type(newKey->name(),newKey->clone()));
00891   }
00892 
00893   inline std::map<String, Keyword*>& HDU::keyWord ()
00894   {
00895 
00896     return m_keyWord;
00897   }
00898 
00899   inline Keyword& HDU::keyWord (const String& keyName)
00900   {
00901   std::map<String,Keyword*>::iterator key = m_keyWord.find(keyName);
00902   if (key == m_keyWord.end()) throw HDU::NoSuchKeyword(keyName);
00903   return *((*key).second);
00904   }
00905 
00906   inline long& HDU::naxis ()
00907   {
00908     return m_naxis;
00909   }
00910 
00911   inline void HDU::naxis (const long& value)
00912   {
00913     m_naxis = value;
00914   }
00915 
00916   inline bool& HDU::anynul ()
00917   {
00918     return m_anynul;
00919   }
00920 
00921   inline void HDU::anynul (const bool& value)
00922   {
00923     m_anynul = value;
00924   }
00925 
00926   inline const std::map<string,Keyword*>& HDU::keyWord () const
00927   {
00928     return m_keyWord;
00929   }
00930 
00931   inline const Keyword& HDU::keyWord (const string& keyname) const
00932   {
00933   std::map<String,Keyword*>::const_iterator key = m_keyWord.find(keyname);
00934   if (key == m_keyWord.end()) throw HDU::NoSuchKeyword(keyname);
00935   return *((*key).second);
00936   }
00937 
00938   inline FITSBase*& HDU::parent ()
00939   {
00940     return m_parent;
00941   }
00942 
00943   inline std::vector< long >& HDU::naxes ()
00944   {
00945     return m_naxes;
00946   }
00947 
00948   inline long& HDU::naxes (size_t index)
00949   {
00950     return m_naxes[index];
00951   }
00952 
00953   inline void HDU::naxes (size_t index, const long& value)
00954   {
00955     m_naxes[index] = value;
00956   }
00957 
00958 } // namespace CCfits
00959 #ifdef SPEC_TEMPLATE_IMP_DEFECT
00960 namespace CCfits {
00961 
00962   inline void HDU::readKeyMS(const String& keyName, int & val)
00963   {
00964           makeThisCurrent();
00965           Keyword& key = readKeyword(keyName);
00966           key.value(val);
00967   }
00968 
00969   inline void HDU::readKeys(std::vector<String>& keyNames, std::vector<String>& vals)
00970   {
00971           size_t nRead = keyNames.size();
00972 
00973           std::list<String> valKeys;
00974           std::list<String>      valList;
00975           for (size_t i = 0; i < nRead; i++) valKeys.push_back(keyNames[i]);
00976           // read all the keys requested, rejecting those that don't exist.
00977 
00978           readKeywords(valKeys);
00979 
00980           // get the values of all of the requested keys, rejecting those of the
00981           // wrong type.
00982 
00983           String current;
00984           std::list<String>::iterator it = valKeys.begin(); 
00985           while (it != valKeys.end())
00986           {
00987                   try
00988                   {
00989                           m_keyWord[*it]->value(current);
00990                           valList.push_back(current);       
00991                           ++it;
00992                   }
00993                   catch ( Keyword::WrongKeywordValueType )
00994                   {
00995                           it = valKeys.erase(it);                         
00996                   }
00997           }
00998 
00999           keyNames.erase(keyNames.begin(),keyNames.end());       
01000 
01001           if (!valList.empty())
01002           {
01003                   if (valList.size() != vals.size()) vals.resize(valList.size());
01004 
01005                   size_t i=0;
01006                                   std::list<String>::const_iterator it1 = valList.begin();
01007                   for ( ; it1 != valList.end(); ++it1,++i)
01008                   {
01009                           vals[i] = *it1;
01010                   }
01011                   for ( it1= valKeys.begin(); it1 != valKeys.end(); ++it1)
01012                   {
01013                           keyNames.push_back(*it1);
01014                   }
01015           }
01016 
01017   }
01018 }
01019  #endif
01020 
01021 
01022 #endif
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/HDUCreator_8h_source.html0000644000225700000360000003243611667502524017310 0ustar cagordonlhea CCfits: HDUCreator.h Source File
CCfits  2.4
HDUCreator.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef HDUCREATOR_H
00010 #define HDUCREATOR_H 1
00011 
00012 // valarray
00013 #include <valarray>
00014 // typeinfo
00015 #include <typeinfo>
00016 // vector
00017 #include <vector>
00018 // string
00019 #include <string>
00020 // CCfitsHeader
00021 #include "CCfits.h"
00022 // FitsError
00023 #include "FitsError.h"
00024 
00025 namespace CCfits {
00026   class FITSBase;
00027   class HDU;
00028   class PHDU;
00029   class ExtHDU;
00030 
00031 } // namespace CCfits
00032 
00033 
00034 namespace CCfits {
00035 
00036 
00037 
00038   class HDUCreator 
00039   {
00040 
00041     public:
00042         HDUCreator (FITSBase* p);
00043         ~HDUCreator();
00044 
00045         //      Read a specified HDU from given fitsfile and
00046         //      return a pointer to it.
00047         HDU * getHdu (const String& hduName, bool readDataFlag = false, const std::vector<String> &keys = std::vector<String>(), bool primary = false, int version = 1);
00048         PHDU * createImage (int bitpix, long naxis, const std::vector<long>& naxes);
00049         void reset ();
00050         HDU * Make (const String& hduName, bool readDataFlag, const std::vector<String> &keys, bool primary, int version);
00051         HDU* createTable (const String &name, HduType xtype, int rows, const std::vector<String>& colName, const std::vector<String> colFmt, const std::vector<String> colUnit, int version);
00052         //      Read a specified HDU from given fitsfile and
00053         //      return a pointer to it.
00054         //
00055         //      With no arguments this reads the PrimaryHDU.
00056         HDU * getHdu (int index = 0, bool readDataFlag = false, const std::vector<String> &keys = std::vector<String>());
00057         ExtHDU * createImage (const String &name, int bitpix, long naxis, const std::vector<long>& naxes, int version);
00058 
00059       // Additional Public Declarations
00060 
00061     protected:
00062       // Additional Protected Declarations
00063 
00064     private:
00065         PHDU * MakeImage (int bpix, int naxis, const std::vector<long>& naxes);
00066         HDU* MakeTable (const String &name, HduType xtype, int rows, const std::vector<String>& colName, const std::vector<String>& colFmt, const std::vector<String>& colUnit, int version);
00067         HDU * Make (int index, bool readDataFlag, const std::vector<String> &keys);
00068         ExtHDU * MakeImage (const String &name, int bpix, long naxis, const std::vector<long>& naxes, int version);
00069         void getScaling (long& type, double& zero, double& scale) const;
00070         void parent (FITSBase* value);
00071         
00072         // Utility function to implement both of the Make() function interfaces.
00073         HDU* commonMake(const String& hduName, bool readDataFlag, const std::vector<String> &keys, bool primary, int version);
00074 
00075       // Data Members for Class Attributes
00076         HDU *m_hdu;
00077 
00078       // Additional Private Declarations
00079 
00080     private: //## implementation
00081       // Data Members for Associations
00082         FITSBase* m_parent;
00083 
00084       // Additional Implementation Declarations
00085 
00086   };
00087 
00088   // Class CCfits::HDUCreator 
00089 
00090   inline HDU * HDUCreator::getHdu (const String& hduName, bool readDataFlag, const std::vector<String> &keys, bool primary, int version)
00091   {
00093   if ( m_hdu == 0 ) m_hdu = Make(hduName,readDataFlag,keys,primary,version);
00094   return m_hdu;
00095   }
00096 
00097   inline void HDUCreator::reset ()
00098   {
00099   m_hdu = 0;
00100   }
00101 
00102   inline HDU* HDUCreator::createTable (const String &name, HduType xtype, int rows, const std::vector<String>& colName, const std::vector<String> colFmt, const std::vector<String> colUnit, int version)
00103   {
00105         if (m_hdu == 0) m_hdu = MakeTable(name,xtype,rows,colName,colFmt,colUnit,version);
00106         return m_hdu;
00107   }
00108 
00109   inline HDU * HDUCreator::getHdu (int index, bool readDataFlag, const std::vector<String> &keys)
00110   {
00112   if ( m_hdu == 0 ) m_hdu = Make(index,readDataFlag,keys);
00113   return m_hdu;
00114   }
00115 
00116   inline void HDUCreator::parent (FITSBase* value)
00117   {
00118     m_parent = value;
00119   }
00120 
00121 } // namespace CCfits
00122 
00123 
00124 #endif
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/Image_8h_source.html0000644000225700000360000012141411667502524016365 0ustar cagordonlhea CCfits: Image.h Source File
CCfits  2.4
Image.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef IMAGE_H
00010 #define IMAGE_H 1
00011 
00012 // functional
00013 #include <functional>
00014 // valarray
00015 #include <valarray>
00016 // vector
00017 #include <vector>
00018 // numeric
00019 #include <numeric>
00020 #ifdef _MSC_VER
00021 #include "MSconfig.h" //form std::min
00022 #endif
00023 #include "CCfits.h"
00024 #include "FitsError.h"
00025 #include "FITSUtil.h"
00026 
00027 
00028 namespace CCfits {
00029 
00030 
00031 
00032   template <typename T>
00033   class Image 
00034   {
00035 
00036     public:
00037         Image(const Image< T > &right);
00038         Image (const std::valarray<T>& imageArray = std::valarray<T>());
00039         ~Image();
00040         Image< T > & operator=(const Image< T > &right);
00041 
00042         //      Read data reads the image if readFlag is true and
00043         //      optional keywords if supplied. Thus, with no arguments,
00044         //      readData() does nothing.
00045         const std::valarray<T>& readImage (fitsfile* fPtr, long first, long nElements, T* nullValue, const std::vector<long>& naxes, bool& nulls);
00046         //      Read data reads the image if readFlag is true and
00047         //      optional keywords if supplied. Thus, with no arguments,
00048         //      readData() does nothing.
00049         const std::valarray<T>& readImage (fitsfile* fPtr, const std::vector<long>& firstVertex, const std::vector<long>& lastVertex, const std::vector<long>& stride, T* nullValue, const std::vector<long>& naxes, bool& nulls);
00050         //      Read data reads the image if readFlag is true and
00051         //      optional keywords if supplied. Thus, with no arguments,
00052         //      readData() does nothing.
00053         void writeImage (fitsfile* fPtr, long first, long nElements, const std::valarray<T>& inData, const std::vector<long>& naxes, T* nullValue = 0);
00054         //      Read data reads the image if readFlag is true and
00055         //      optional keywords if supplied. Thus, with no arguments,
00056         //      readData() does nothing.
00057         void writeImage (fitsfile* fPtr, const std::vector<long>& firstVertex, const std::vector<long>& lastVertex, const std::vector<long>& stride, const std::valarray<T>& inData, const std::vector<long>& naxes);
00058         void writeImage (fitsfile* fPtr, const std::vector<long>& firstVertex, const std::vector<long>& lastVertex, const std::valarray<T>& inData, const std::vector<long>& naxes);
00059         bool isRead () const;
00060         void isRead (bool value);
00061         const std::valarray< T >& image () const;
00062         void setImage (const std::valarray< T >& value);
00063         const T image (size_t index) const;
00064         void setImage (size_t index, T value);
00065 
00066       // Additional Public Declarations
00067 
00068     protected:
00069       // Additional Protected Declarations
00070 
00071     private:
00072         std::valarray<T>& image ();
00073         void prepareForSubset (const std::vector<long>& naxes, const std::vector<long>& firstVertex, const std::vector<long>& lastVertex, const std::vector<long>& stride, const std::valarray<T>& inData, std::valarray<T>& subset);
00074         void loop (size_t iDim, const std::vector<long>& firstVertex, const std::vector<long>& lastVertex, const std::vector<long>& stride, size_t iPos, const std::vector<size_t>& incr, const std::valarray<T>& inData, size_t& iDat, const std::vector<size_t>& subIncr, std::valarray<T>& subset, size_t iSub);
00075 
00076       // Additional Private Declarations
00077 
00078     private: //## implementation
00079       // Data Members for Class Attributes
00080         bool m_isRead;
00081 
00082       // Data Members for Associations
00083         std::valarray< T > m_image;
00084 
00085       // Additional Implementation Declarations
00086 
00087   };
00088 
00089   // Parameterized Class CCfits::Image 
00090 
00091   template <typename T>
00092   inline bool Image<T>::isRead () const
00093   {
00094     return m_isRead;
00095   }
00096 
00097   template <typename T>
00098   inline void Image<T>::isRead (bool value)
00099   {
00100     m_isRead = value;
00101   }
00102 
00103   template <typename T>
00104   inline const std::valarray< T >& Image<T>::image () const
00105   {
00106     return m_image;
00107   }
00108 
00109   template <typename T>
00110   inline void Image<T>::setImage (const std::valarray< T >& value)
00111   {
00112     m_image.resize(value.size());
00113     m_image = value;
00114   }
00115 
00116   template <typename T>
00117   inline const T Image<T>::image (size_t index) const
00118   {
00119     return m_image[index];
00120   }
00121 
00122   template <typename T>
00123   inline void Image<T>::setImage (size_t index, T value)
00124   {
00125     m_image[index]  = value;
00126   }
00127 
00128   // Parameterized Class CCfits::Image 
00129 
00130   template <typename T>
00131   Image<T>::Image(const Image<T> &right)
00132         : m_isRead(right.m_isRead),
00133           m_image(right.m_image)
00134   {
00135   }
00136 
00137   template <typename T>
00138   Image<T>::Image (const std::valarray<T>& imageArray)
00139         : m_isRead(false),
00140           m_image(imageArray)
00141   {
00142   }
00143 
00144 
00145   template <typename T>
00146   Image<T>::~Image()
00147   {
00148   }
00149 
00150 
00151   template <typename T>
00152   Image<T> & Image<T>::operator=(const Image<T> &right)
00153   {
00154       // all stack allocated.
00155      m_isRead = right.m_isRead;
00156      m_image.resize(right.m_image.size());
00157      m_image = right.m_image;
00158      return *this;
00159   }
00160 
00161 
00162   template <typename T>
00163   const std::valarray<T>& Image<T>::readImage (fitsfile* fPtr, long first, long nElements, T* nullValue, const std::vector<long>& naxes, bool& nulls)
00164   {
00165         const size_t N(naxes.size());
00166         if (N > 0)
00167         {
00168                 int status(0);
00169                 int any (0);
00170                 FITSUtil::MatchType<T> imageType;
00171                 unsigned long init(1);
00172                 unsigned long nelements(std::accumulate(naxes.begin(),naxes.end(),init,
00173                                 std::multiplies<long>()));
00174 
00175                 // truncate to valid array size if too much data asked for.
00176                 // note first is 1-based index)
00177                 long elementsToRead(std::min(static_cast<unsigned long>(nElements),
00178                                 nelements - first + 1));
00179                 if ( elementsToRead < nElements)
00180                 {
00181                         std::cerr << 
00182                                 "***CCfits Warning: data request exceeds image size, truncating\n"; 
00183                 }
00184                 FITSUtil::FitsNullValue<T> null;
00185                 // initialize m_image to nullValue. resize if necessary.
00186                 if (m_image.size() != static_cast<size_t>(elementsToRead)) 
00187                 {
00188                         m_image.resize(elementsToRead,null());
00189                 }
00190                 if (fits_read_img(fPtr,imageType(),first,elementsToRead,
00191                        nullValue,&m_image[0],&any,&status) != 0) throw FitsError(status);
00192 
00193                 nulls = (any != 0);
00194                 m_isRead = (first == 1 && nelements == static_cast<unsigned long>(nElements)); 
00195         }
00196         else
00197         {
00198                 m_isRead = true;
00199                 m_image.resize(0);
00200         }
00201         return m_image;
00202   }
00203 
00204   template <typename T>
00205   const std::valarray<T>& Image<T>::readImage (fitsfile* fPtr, const std::vector<long>& firstVertex, const std::vector<long>& lastVertex, const std::vector<long>& stride, T* nullValue, const std::vector<long>& naxes, bool& nulls)
00206   {
00207 
00208 
00209 
00210      FITSUtil::CVarray<long> carray;
00211 
00212 
00213      int any(0);
00214      int status(0);
00215      const size_t N(naxes.size());
00216 
00217      size_t arraySize(1);
00218 
00219      for (size_t j = 0; j < N; ++j)
00220      {
00221              arraySize *= (lastVertex[j] - firstVertex[j] + 1);       
00222      }
00223 
00224      FITSUtil::auto_array_ptr<long> pFpixel(carray(firstVertex));
00225      FITSUtil::auto_array_ptr<long> pLpixel(carray(lastVertex));
00226      FITSUtil::auto_array_ptr<long> pStride(carray(stride));
00227 
00228      FITSUtil::MatchType<T> imageType;
00229 
00230      size_t n(m_image.size());
00231      if (n != arraySize)  m_image.resize(arraySize);
00232      if (fits_read_subset(fPtr,imageType(),
00233                              pFpixel.get(),pLpixel.get(),
00234                              pStride.get(),nullValue,&m_image[0],&any,&status) != 0)
00235      {
00236                 throw FitsError(status);        
00237 
00238      }
00239 
00240      nulls = (any != 0);
00241      return m_image;    
00242   }
00243 
00244   template <typename T>
00245   void Image<T>::writeImage (fitsfile* fPtr, long first, long nElements, const std::valarray<T>& inData, const std::vector<long>& naxes, T* nullValue)
00246   {
00247 
00248 
00249      int status(0);
00250      size_t init(1);   
00251      size_t totalSize= static_cast<size_t>(std::accumulate(naxes.begin(),naxes.end(),init,std::multiplies<long>() ));
00252      FITSUtil::FitsNullValue<T> null;
00253      if (m_image.size() != totalSize) m_image.resize(totalSize,null());
00254      FITSUtil::CAarray<T> convert;
00255      FITSUtil::auto_array_ptr<T>    pArray(convert(inData));                     
00256      T* array = pArray.get();
00257 
00258 
00259      FITSUtil::MatchType<T> imageType;
00260      long type(imageType());
00261 
00262      if (fits_write_imgnull(fPtr,type,first,nElements,array,
00263                      nullValue,&status) || fits_flush_file(fPtr,&status) != 0)
00264      {
00265                 throw FitsError(status);        
00266 
00267      }
00268 
00269 
00270 
00271      m_image[std::slice(first-1,nElements,1)]  = inData;
00272   }
00273 
00274   template <typename T>
00275   void Image<T>::writeImage (fitsfile* fPtr, const std::vector<long>& firstVertex, const std::vector<long>& lastVertex, const std::vector<long>& stride, const std::valarray<T>& inData, const std::vector<long>& naxes)
00276   {
00277         // input vectors' size equality will be verified in prepareForSubset.
00278         const size_t nDim = naxes.size();
00279         FITSUtil::auto_array_ptr<long> pFPixel(new long[nDim]);
00280         FITSUtil::auto_array_ptr<long> pLPixel(new long[nDim]);
00281         std::valarray<T> subset;
00282         prepareForSubset(naxes,firstVertex,lastVertex,stride,inData,subset);
00283 
00284         long* fPixel = pFPixel.get();
00285         long* lPixel = pLPixel.get();
00286         for (size_t i=0; i<nDim; ++i)
00287         {
00288            fPixel[i] = firstVertex[i];
00289            lPixel[i] = lastVertex[i];
00290         }
00291 
00292         FITSUtil::CAarray<T> convert;
00293         FITSUtil::auto_array_ptr<T> pArray(convert(subset));
00294         T* array = pArray.get();
00295         FITSUtil::MatchType<T> imageType;        
00296         int status(0);
00297 
00298         if ( fits_write_subset(fPtr,imageType(),fPixel,lPixel,array,&status) 
00299                         || fits_flush_file(fPtr,&status)  != 0) throw FitsError(status);
00300   }
00301 
00302   template <typename T>
00303   std::valarray<T>& Image<T>::image ()
00304   {
00305 
00306     return m_image;
00307   }
00308 
00309   template <typename T>
00310   void Image<T>::prepareForSubset (const std::vector<long>& naxes, const std::vector<long>& firstVertex, const std::vector<long>& lastVertex, const std::vector<long>& stride, const std::valarray<T>& inData, std::valarray<T>& subset)
00311   {
00312 
00313     // naxes, firstVertex, lastVertex, and stride must all be the same size.
00314     const size_t N = naxes.size();
00315     if (N != firstVertex.size() || N != lastVertex.size() || N != stride.size())
00316     {
00317        string errMsg("*** CCfits Error: Image write function requires that naxes, firstVertex,");
00318        errMsg += "       \nlastVertex, and stride vectors all be the same size.\n";
00319        bool silent = false;
00320        throw FitsException(errMsg, silent);
00321     }
00322     for (size_t i=0; i<N; ++i)
00323     {
00324        if (naxes[i] < 1)
00325        {
00326           bool silent = false;
00327           throw FitsException("*** CCfits Error: Invalid naxes value sent to image write function.\n", silent);
00328        }
00329        string rangeErrMsg("*** CCfits Error: Out-of-range value sent to image write function in arg: ");
00330        if (firstVertex[i] < 1 || firstVertex[i] > naxes[i]) 
00331        {
00332           bool silent = false;
00333           rangeErrMsg += "firstVertex\n";
00334           throw FitsException(rangeErrMsg, silent);
00335        }
00336        if (lastVertex[i] < firstVertex[i] || lastVertex[i] > naxes[i])
00337        {
00338           bool silent = false;
00339           rangeErrMsg += "lastVertex\n";
00340           throw FitsException(rangeErrMsg, silent);
00341        }
00342        if (stride[i] < 1)
00343        {
00344           bool silent = false;
00345           rangeErrMsg += "stride\n";
00346           throw FitsException(rangeErrMsg, silent);
00347        }
00348     }
00349 
00350     // nPoints refers to the subset of m_image INCLUDING the zero'ed elements 
00351     // resulting from the stride parameter.  
00352     // subSizeWithStride refers to the same subset, not counting the zeros.
00353     size_t subSizeWithStride = 1;
00354     size_t nPoints = 1;
00355     std::vector<size_t> subIncr(N);
00356     for (size_t i=0; i<N; ++i)
00357     {
00358        subIncr[i] = nPoints;
00359        nPoints *= static_cast<size_t>(1+lastVertex[i]-firstVertex[i]);
00360        subSizeWithStride *= static_cast<size_t>(1+(lastVertex[i]-firstVertex[i])/stride[i]);
00361     }
00362     FITSUtil::FitsNullValue<T> null;
00363     subset.resize(nPoints, null());
00364 
00365     // Trying to avoid at all costs an assignment between 2 valarrays of 
00366     // different sizes when m_image gets set below.
00367     if (subSizeWithStride != inData.size())
00368     {
00369        bool silent = false;
00370        string errMsg("*** CCfits Error: Data array size is not consistent with the values");
00371        errMsg += "\n      in range and stride vectors sent to the image write function.\n";
00372        throw FitsException(errMsg, silent);
00373     }
00374 
00375     size_t startPoint = 0;
00376     size_t dimMult = 1;
00377     std::vector<size_t> incr(N);
00378     for (size_t j = 0; j < N; ++j)
00379     {
00380        startPoint += dimMult*(firstVertex[j]-1);
00381        incr[j] = dimMult;
00382        dimMult *= static_cast<size_t>(naxes[j]);
00383     }
00384     const size_t imageSize = dimMult;
00385     m_image.resize(imageSize,null());
00386 
00387     size_t inDataPos = 0;
00388     size_t iSub = 0;
00389     loop(N-1, firstVertex, lastVertex, stride, startPoint, incr, inData, inDataPos, subIncr, subset, iSub);           
00390   }
00391 
00392   template <typename T>
00393   void Image<T>::loop (size_t iDim, const std::vector<long>& firstVertex, const std::vector<long>& lastVertex, const std::vector<long>& stride, size_t iPos, const std::vector<size_t>& incr, const std::valarray<T>& inData, size_t& iDat, const std::vector<size_t>& subIncr, std::valarray<T>& subset, size_t iSub)
00394   {
00395      size_t start = static_cast<size_t>(firstVertex[iDim]);
00396      size_t stop = static_cast<size_t>(lastVertex[iDim]);
00397      size_t skip = static_cast<size_t>(stride[iDim]);
00398      if (iDim == 0)
00399      {
00400         size_t length = stop - start + 1;
00401         for (size_t i=0; i<length; i+=skip)
00402         {
00403            m_image[i+iPos] = inData[iDat];
00404            subset[i+iSub] = inData[iDat++];
00405         }
00406      }
00407      else
00408      {
00409         size_t jump = incr[iDim]*skip;
00410         size_t subJump = subIncr[iDim]*skip;
00411         for (size_t i=start; i<=stop; i+=skip)
00412         {
00413            loop(iDim-1, firstVertex, lastVertex, stride, iPos, incr, inData, iDat, subIncr, subset, iSub);
00414            iPos += jump;
00415            iSub += subJump;
00416         }
00417      }
00418   }
00419 
00420   template <typename T>
00421   void Image<T>::writeImage (fitsfile* fPtr, const std::vector<long>& firstVertex, const std::vector<long>& lastVertex, const std::valarray<T>& inData, const std::vector<long>& naxes)
00422   {
00423      std::vector<long> stride(firstVertex.size(), 1);
00424      writeImage(fPtr, firstVertex, lastVertex, stride, inData, naxes);
00425   }
00426 
00427   // Additional Declarations
00428 
00429 } // namespace CCfits
00430 
00431 
00432 #endif
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/ImageExt_8h_source.html0000644000225700000360000011165011667502524017047 0ustar cagordonlhea CCfits: ImageExt.h Source File
CCfits  2.4
ImageExt.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef IMAGEEXT_H
00010 #define IMAGEEXT_H 1
00011 
00012 // ExtHDU
00013 #include "ExtHDU.h"
00014 // HDUCreator
00015 #include "HDUCreator.h"
00016 // Image
00017 #include "Image.h"
00018 // FITSUtil
00019 #include "FITSUtil.h"
00020 #ifdef _MSC_VER
00021 #include "MSconfig.h" // for truncation warning
00022 #endif
00023 
00024 
00025 namespace CCfits {
00026 
00055   template <typename T>
00056   class ImageExt : public ExtHDU  //## Inherits: <unnamed>%3804A11121D8
00057   {
00058 
00059     public:
00060         virtual ~ImageExt();
00061 
00062         virtual ImageExt<T> * clone (FITSBase* p) const;
00063         virtual void readData (bool readFlag = false, const std::vector<String>& keys = std::vector<String>());
00064         const std::valarray<T>& image () const;
00065         virtual void zero (double value);
00066         virtual void scale (double value);
00067         virtual double zero () const;
00068         virtual double scale () const;
00069 
00070       // Additional Public Declarations
00071 
00072     protected:
00073         ImageExt (FITSBase* p, const String &hduName, bool readDataFlag = false, const std::vector<String>& keys = std::vector<String>(), int version = 1);
00074         ImageExt (FITSBase* p, const String &hduName, int bpix, int naxis, const std::vector<long>& naxes, int version = 1);
00075 
00076       // Additional Protected Declarations
00077         virtual void checkExtensionType() const;
00078     private:
00079         ImageExt(const ImageExt< T > &right);
00080         ImageExt< T > & operator=(const ImageExt< T > &right);
00081 
00082         virtual void initRead ();
00083         virtual std::ostream & put (std::ostream &s) const;
00084         //      Read data reads the image if readFlag is true and
00085         //      optional keywords if supplied. Thus, with no arguments,
00086         //      readData() does nothing.
00087         virtual const std::valarray<T>& readImage (long first, long nElements, T* nullValue);
00088         //      Read data reads the image if readFlag is true and
00089         //      optional keywords if supplied. Thus, with no arguments,
00090         //      readData() does nothing.
00091         virtual const std::valarray<T>& readImage (const std::vector<long>& firstVertex, const std::vector<long>& lastVertex, const std::vector<long>& stride, T* nullValue);
00092         //      Read data reads the image if readFlag is true and
00093         //      optional keywords if supplied. Thus, with no arguments,
00094         //      readData() does nothing.
00095         virtual void writeImage (long first, long nElements, const std::valarray<T>& inData, T* nullValue = 0);
00096         //      Read data reads the image if readFlag is true and
00097         //      optional keywords if supplied. Thus, with no arguments,
00098         //      readData() does nothing.
00099         virtual void writeImage (const std::vector<long>& firstVertex, const std::vector<long>& lastVertex, const std::valarray<T>& inData);
00100         const Image<T>& data () const;
00101 
00102       // Additional Private Declarations
00103 
00104     private: //## implementation
00105       // Data Members for Associations
00106         Image<T> m_data;
00107 
00108       // Additional Implementation Declarations
00109       friend class ExtHDU;
00110       friend class HDUCreator;
00111   };
00112 
00113   // Parameterized Class CCfits::ImageExt 
00114 
00115   template <typename T>
00116   inline std::ostream & ImageExt<T>::put (std::ostream &s) const
00117   {
00118   s << "Image Extension::  "  <<  " Name: " << name() << " Extension: " << xtension() 
00119           << " BITPIX "<< bitpix() << '\n';
00120 
00121   s <<  " Axis Lengths: \n";
00122   for (size_t j =1; j < static_cast<size_t>( axes() ) ; j++)
00123   {
00124         s << " Axis: " << j << "  " << axis(j-1) << '\n';  
00125   }
00126 
00127 
00128 
00129   s << "Image Extension:: Version: " << version() << " HDU number: " <<  index() << '\n';
00130 
00131   s << " HISTORY: " << history() << '\n';
00132   s << " COMMENTS: " <<comment() << '\n';
00133 
00134   s << "BinTable:: nKeywords: " << keyWord().size() << '\n';
00135 
00136     return s;
00137   }
00138 
00139   template <typename T>
00140   inline const Image<T>& ImageExt<T>::data () const
00141   {
00142     return m_data;
00143   }
00144 
00145   // Parameterized Class CCfits::ImageExt 
00146 
00147   template <typename T>
00148   ImageExt<T>::ImageExt(const ImageExt<T> &right)
00149       : ExtHDU(right), m_data(right.m_data)
00150   {
00151   }
00152 
00153   template <typename T>
00154   ImageExt<T>::ImageExt (FITSBase* p, const String &hduName, bool readDataFlag, const std::vector<String>& keys, int version)
00155       : ExtHDU(p,ImageHdu,hduName,version),  m_data()
00156   {
00157   initRead();
00158   if (readDataFlag || keys.size() ) readData(readDataFlag,keys);  
00159   }
00160 
00161   template <typename T>
00162   ImageExt<T>::ImageExt (FITSBase* p, const String &hduName, int bpix, int naxis, const std::vector<long>& naxes, int version)
00163       : ExtHDU(p,ImageHdu,hduName,bpix,naxis,naxes,version), m_data()
00164   {
00165   // resize m_image according to naxes, and data according to m_image,
00166   // and equate them. Valarray = must be performed on items of the same
00167   // size according to the standard.
00168   int status (0);
00169   FITSUtil::CVarray<long> convert;
00170   FITSUtil::auto_array_ptr<long> axis(convert(naxes));
00171   static char EXTNAME[] = "EXTNAME";
00172   static char HDUVERS[] = "HDUVERS";
00173 
00174           if ( fits_create_img(fitsPointer(), bpix, naxis, axis.get(), &status) )
00175           {
00176 
00177                 throw FitsError(status);
00178           } 
00179           else
00180           {
00181                 char * comment = 0;
00182                 if (fits_write_key(fitsPointer(),Tstring,EXTNAME,
00183                                 const_cast<char*>(hduName.c_str()), comment,&status)) 
00184                 {
00185                         throw FitsError(status);
00186                 }                
00187                 if (version != 0 && fits_write_key(fitsPointer(),Tint,HDUVERS,&version,
00188                                         comment,&status)) throw FitsError(status);     
00189           }      
00190   }
00191 
00192 
00193   template <typename T>
00194   ImageExt<T>::~ImageExt()
00195   {
00196   }
00197 
00198 
00199   template <typename T>
00200   void ImageExt<T>::initRead ()
00201   {
00202   }
00203 
00204   template <typename T>
00205   ImageExt<T> * ImageExt<T>::clone (FITSBase* p) const
00206   {
00207   ImageExt<T>* cloned = new ImageExt<T>(*this);
00208   cloned->parent() = p;
00209   return cloned;
00210   }
00211 
00212   template <typename T>
00213   void ImageExt<T>::readData (bool readFlag, const std::vector<String>& keys)
00214   {
00215   // Default reading mode. Read everything if readFlag is true.
00216   // this is identical to the equivalent method for PrimaryHDU<T>,
00217   // so will one day turn this into a simple call that shares the code.
00218   makeThisCurrent();
00219 
00220   if ( keys.size() > 0) 
00221   {
00222         std::list<string> keyList;
00223         // keys is converted to a list so that any keys not in the header
00224         // can be easily erased. internally an exception will be thrown,
00225         // on a missing key, and its catch clause will print a message.
00226         for (std::vector<string>::const_iterator j = keys.begin(); j != keys.end(); ++j)
00227         {
00228                 keyList.push_back(*j);
00229         } 
00230         readKeywords(keyList);
00231   }
00232 
00233   if ( readFlag)  // read the entire image, setting null values to FLT_MIN.
00234   {
00235 
00236         FITSUtil::FitsNullValue<T> null;
00237         T nulval = null();
00238         long first(1);
00239         long nelements(1);
00240         for (size_t i = 0; i < naxes().size(); i++) nelements *= naxes(i);
00241         m_data.readImage(fitsPointer(),first,nelements,&nulval,naxes(),anynul());
00242 
00243     }
00244   }
00245 
00246   template <typename T>
00247   const std::valarray<T>& ImageExt<T>::image () const
00248   {
00249 
00250     return m_data.image();
00251   }
00252 
00253   template <typename T>
00254   const std::valarray<T>& ImageExt<T>::readImage (long first, long nElements, T* nullValue)
00255   {
00256     checkExtensionType();
00257     return m_data.readImage(fitsPointer(),first,nElements,nullValue,naxes(),anynul());
00258   }
00259 
00260   template <typename T>
00261   const std::valarray<T>& ImageExt<T>::readImage (const std::vector<long>& firstVertex, const std::vector<long>& lastVertex, const std::vector<long>& stride, T* nullValue)
00262   {
00263     checkExtensionType();
00264     return m_data.readImage(fitsPointer(),firstVertex,lastVertex,stride,nullValue,naxes(),anynul());
00265   }
00266 
00267   template <typename T>
00268   void ImageExt<T>::writeImage (long first, long nElements, const std::valarray<T>& inData, T* nullValue)
00269   {
00270     checkExtensionType();
00271     m_data.writeImage(fitsPointer(),first,nElements,inData,naxes(),nullValue);
00272   }
00273 
00274   template <typename T>
00275   void ImageExt<T>::writeImage (const std::vector<long>& firstVertex, const std::vector<long>& lastVertex, const std::valarray<T>& inData)
00276   {
00277     checkExtensionType();
00278     m_data.writeImage(fitsPointer(),firstVertex,lastVertex,inData,naxes());
00279   }
00280 
00281   template <typename T>
00282   void ImageExt<T>::zero (double value)
00283   {
00284     makeThisCurrent();
00285     if (checkImgDataTypeChange(value, scale()))
00286     {
00287        if (naxis())
00288        {
00289            int status(0);
00290            if (fits_update_key(fitsPointer(), Tdouble, BZERO, &value, 0, &status))
00291               throw FitsError(status);
00292            fits_flush_file(fitsPointer(), &status);
00293            HDU::zero(value);
00294        }
00295     }
00296     else
00297     {
00298        bool silent=false;
00299        string msg("CCfits Error: Cannot set BZERO to a value which will change image data\n");
00300            msg += "              from integer type to floating point type.";
00301        throw FitsException(msg,silent);
00302     }
00303   }
00304 
00305   template <typename T>
00306   void ImageExt<T>::scale (double value)
00307   {
00308     makeThisCurrent();
00309     if (checkImgDataTypeChange(zero(), value))
00310     {
00311        if (naxis())
00312        {
00313            int status(0);
00314            if (fits_update_key(fitsPointer(), Tdouble, BSCALE, &value, 0, &status))
00315               throw FitsError(status);
00316            fits_flush_file(fitsPointer(), &status);
00317            HDU::scale(value);
00318        } 
00319     }
00320     else
00321     {
00322        bool silent=false;
00323        string msg("CCfits Error: Cannot set BSCALE to a value which will change image data\n");
00324            msg += "              from integer type to floating point type.";
00325        throw FitsException(msg,silent);
00326     }
00327   }
00328 
00329   template <typename T>
00330   double ImageExt<T>::zero () const
00331   {
00332 
00333     return HDU::zero();
00334   }
00335 
00336   template <typename T>
00337   double ImageExt<T>::scale () const
00338   {
00339 
00340     return HDU::scale();
00341   }
00342 
00343   // Additional Declarations
00344     template <typename T>
00345     inline void ImageExt<T>::checkExtensionType() const
00346     {
00347 
00348     }
00349 } // namespace CCfits
00350 
00351 
00352 #endif
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/KeyData_8h_source.html0000644000225700000360000010251511667502524016666 0ustar cagordonlhea CCfits: KeyData.h Source File
CCfits  2.4
KeyData.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef KEYDATA_H
00010 #define KEYDATA_H 1
00011 #ifdef _MSC_VER
00012 #include "MSconfig.h"
00013 #endif
00014 
00015 #include "CCfits.h"
00016 
00017 // Keyword
00018 #include "Keyword.h"
00019 #include <complex>
00020 #include <iomanip>
00021 #include "FitsError.h"
00022 #include "FITSUtil.h"
00023 
00024 
00025 namespace CCfits {
00026 //class Keyword;
00027 
00028 
00029 
00030   template <typename T>
00031   class KeyData : public Keyword  //## Inherits: <unnamed>%381F43399D58
00032   {
00033 
00034     public:
00035         KeyData(const KeyData< T > &right);
00036         KeyData (const String &keyname, ValueType keytype, const T &value, HDU* p,      // A pointer to the HDU containing the keyword. This is passed to the base class constructor.
00037         const String &comment = "");
00038         virtual ~KeyData();
00039 
00040         virtual KeyData <T>* clone () const;
00041         virtual void write ();
00042         const T& keyval () const;
00043         void keyval (const T& value);
00044 
00045       // Additional Public Declarations
00046 
00047     protected:
00048         virtual void copy (const Keyword& right);
00049         virtual bool compare (const Keyword &right) const;
00050         virtual std::ostream & put (std::ostream &s) const;
00051 
00052       // Additional Protected Declarations
00053 
00054     private:
00055       // Data Members for Class Attributes
00056         T m_keyval;
00057 
00058       // Additional Private Declarations
00059 
00060     private: //## implementation
00061       // Additional Implementation Declarations
00062 
00063   };
00064 #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT
00065         template<>
00066         inline void KeyData<String>::write() 
00067         {
00068            Keyword::write();
00069            int status = 0;
00070            if (fits_update_key(fitsPointer(), Tstring, 
00071                                    const_cast<char *>(name().c_str()),
00072                                    const_cast<char*>(m_keyval.c_str()),
00073                                    const_cast<char *>(comment().c_str()), 
00074                                    &status)) throw FitsError(status);
00075 
00076         }
00077 #else
00078 template<> void KeyData<String>::write();
00079 #endif
00080 
00081 #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT
00082         template<>
00083         inline void KeyData<bool>::write() 
00084         {
00085            Keyword::write();
00086            int status = 0;
00087            int value(0);
00088            if (m_keyval) value=1; 
00089            if (fits_update_key(fitsPointer(), Tlogical, 
00090                                    const_cast<char *>(name().c_str()),
00091                                    &value,
00092                                    const_cast<char *>(comment().c_str()), 
00093                                    &status)) throw FitsError(status);
00094 
00095         }
00096 #else
00097 template<> void KeyData<bool>::write();
00098 #endif
00099 
00100 #ifdef SPEC_TEMPLATE_DECL_DEFECT
00101         template  <>
00102         inline const String& KeyData<String>::keyval() const
00103         {
00104                 return m_keyval;
00105 
00106         }
00107 #else
00108 template<> const String& KeyData<String>::keyval() const;
00109 #endif
00110 
00111 #ifndef SPEC_TEMPLATE_DECL_DEFECT
00112 template<> void KeyData<String>::keyval(const String& );
00113 #endif
00114 
00115 #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT
00116         template <>
00117         inline std::ostream & KeyData<String>::put (std::ostream &s) const
00118         {
00119                 using std::setw;
00120                 s << "Keyword Name: " << setw(10) << name() << "  Value: " << setw(14) 
00121                   << keyval() << " Type: " << setw(20) << " string "  << " Comment: " << comment();
00122           return s;
00123         }
00124 
00125 #else
00126 template<> std::ostream& KeyData<String>::put(std::ostream& s) const;
00127 #endif
00128 
00129 
00130 #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT
00131         template <>
00132         inline std::ostream & KeyData<bool>::put (std::ostream &s) const
00133         {
00134                 using std::setw;
00135                 s << "Keyword Name: " << setw(10) << name() 
00136                   << "  Value: " << std::boolalpha  << setw(8) << keyval() 
00137                   << "  Type: " << setw(20) << " logical "  << " Comment: " << comment();
00138           return s;
00139         }
00140 
00141 #else
00142 template<> std::ostream& KeyData<bool>::put(std::ostream& s) const;
00143 #endif
00144 
00145 #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT
00146         template<>
00147         inline void KeyData<std::complex<float> >::write() 
00148         {
00149              Keyword::write();
00150              int status = 0;
00151              FITSUtil::auto_array_ptr<float> keyVal( new float[2]);
00152              keyVal[0] = m_keyval.real(); 
00153              keyVal[1] = m_keyval.imag(); 
00154              if (fits_update_key(fitsPointer(), Tcomplex, 
00155                                    const_cast<char *>(name().c_str()),
00156                                    keyVal.get(),
00157                                    const_cast<char *>(comment().c_str()), 
00158                                    &status)) throw FitsError(status);
00159 
00160         }
00161 #else
00162 template<> void KeyData<std::complex<float> >::write();
00163 #endif
00164 
00165 #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT
00166         template<>
00167         inline void KeyData<std::complex<double> >::write() 
00168         {
00169              Keyword::write();
00170              int status = 0;
00171              FITSUtil::auto_array_ptr<double> keyVal(new double[2]);
00172              keyVal[0] = m_keyval.real(); 
00173              keyVal[1] = m_keyval.imag(); 
00174              if (fits_update_key(fitsPointer(), Tdblcomplex, 
00175                                    const_cast<char *>(name().c_str()),
00176                                    keyVal.get(),
00177                                    const_cast<char *>(comment().c_str()), 
00178                                    &status)) throw FitsError(status);
00179 
00180         }
00181 #else
00182 template<> void KeyData<std::complex<double> >::write();
00183 #endif
00184 
00185 #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT
00186         template <>
00187         inline std::ostream & KeyData<std::complex<float> >::put (std::ostream &s) const
00188         {
00189                 using std::setw;
00190                 s << "Keyword Name: " << name() << " Value: " << m_keyval.real() << " +   i " 
00191                   << m_keyval.imag() <<   " Type: " <<  setw(20) << " complex<float> " 
00192                   << " Comment: " << comment()   << std::endl;
00193           return s;
00194         }
00195 
00196         template <>
00197         inline std::ostream & KeyData<std::complex<double> >::put (std::ostream &s) const
00198         {
00199                 using std::setw;
00200                 s << "Keyword Name: " << name() << " Value: " << m_keyval.real() << " +   i " 
00201                   << m_keyval.imag() <<   " Type: " <<  setw(20) << " complex<double> " 
00202                   << " Comment: " << comment()   << std::endl;
00203 
00204                   return s;
00205         }
00206 #else
00207 template<> std::ostream& KeyData<std::complex<float> >::put(std::ostream& s) const;
00208 template<> std::ostream& KeyData<std::complex<double> >::put(std::ostream& s) const;
00209 #endif
00210 
00211 #ifdef SPEC_TEMPLATE_DECL_DEFECT
00212   template  <>
00213   inline const std::complex<float>& KeyData<std::complex<float> >::keyval() const
00214   {
00215     return m_keyval;
00216 
00217   }
00218 
00219   template  <>
00220   inline void KeyData<std::complex<float> >::keyval(const std::complex<float>&  newVal)
00221   {
00222     m_keyval = newVal;
00223 
00224   }
00225 
00226   template  <>
00227   inline const std::complex<double>& KeyData<std::complex<double> >::keyval() const
00228   {
00229     return m_keyval;
00230 
00231   }
00232 
00233   template  <>
00234   inline void KeyData<std::complex<double> >::keyval(const std::complex<double>&  newVal)
00235   {
00236     m_keyval = newVal;
00237 
00238   }
00239 
00240 #else
00241 template<> const std::complex<float>&  KeyData<std::complex<float> >::keyval() const;
00242 template<> void KeyData<std::complex<float> >::keyval(const std::complex<float>&  );
00243 
00244 
00245 
00246 template<> const std::complex<double>&  KeyData<std::complex<double> >::keyval() const;
00247 template<> void KeyData<std::complex<double> >::keyval(const std::complex<double>&  );
00248 #endif
00249 
00250   // Parameterized Class CCfits::KeyData 
00251 
00252   template <typename T>
00253   inline std::ostream & KeyData<T>::put (std::ostream &s) const
00254   {
00255    s << "Keyword Name: " << name() << "\t Value: " << keyval() << 
00256      "\t Type: " << keytype() << "\t Comment: " << comment();
00257 
00258   return s;
00259   }
00260 
00261   template <typename T>
00262   inline const T& KeyData<T>::keyval () const
00263   {
00264     return m_keyval;
00265   }
00266 
00267   template <typename T>
00268   inline void KeyData<T>::keyval (const T& value)
00269   {
00270     m_keyval = value;
00271   }
00272 
00273   // Parameterized Class CCfits::KeyData 
00274 
00275   template <typename T>
00276   KeyData<T>::KeyData(const KeyData<T> &right)
00277       :Keyword(right),
00278        m_keyval(right.m_keyval)
00279   {
00280   }
00281 
00282   template <typename T>
00283   KeyData<T>::KeyData (const String &keyname, ValueType keytype, const T &value, HDU* p, const String &comment)
00284        : Keyword(keyname, keytype, p, comment), 
00285          m_keyval(value)
00286   {
00287   }
00288 
00289 
00290   template <typename T>
00291   KeyData<T>::~KeyData()
00292   {
00293   }
00294 
00295 
00296   template <typename T>
00297   void KeyData<T>::copy (const Keyword& right)
00298   {
00299   Keyword::copy(right);
00300   const KeyData<T>& that = static_cast<const KeyData<T>&>(right);
00301   m_keyval = that.m_keyval;
00302   }
00303 
00304   template <typename T>
00305   bool KeyData<T>::compare (const Keyword &right) const
00306   {
00307   if ( !Keyword::compare(right) ) return false;
00308   const KeyData<T>& that = static_cast<const KeyData<T>&>(right);
00309   if (this->m_keyval != that.m_keyval) return false;
00310   return true;
00311   }
00312 
00313   template <typename T>
00314   KeyData <T>* KeyData<T>::clone () const
00315   {
00316   return new KeyData<T>(*this);
00317   }
00318 
00319   template <typename T>
00320   void KeyData<T>::write ()
00321   {
00322    Keyword::write();
00323    int status = 0;
00324    FITSUtil::MatchType<T> keyType;
00325    if ( fits_update_key(fitsPointer(),keyType(), 
00326                            const_cast<char *>(name().c_str()),
00327                            &m_keyval,  // fits_write_key takes a void* here 
00328                            const_cast<char *>(comment().c_str()), 
00329                            &status) ) throw FitsError(status);
00330   }
00331 
00332   // Additional Declarations
00333 
00334 } // namespace CCfits
00335 
00336 
00337 #endif
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/Keyword_8h_source.html0000644000225700000360000005436611667502524017002 0ustar cagordonlhea CCfits: Keyword.h Source File
CCfits  2.4
Keyword.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef KEYWORD_H
00010 #define KEYWORD_H 1
00011 #include "CCfits.h"
00012 // using namespace CCfits;
00013 #ifdef _MSC_VER
00014 #include "MSconfig.h"
00015 #endif
00016 
00017 // FitsError
00018 #include "FitsError.h"
00019 
00020 namespace CCfits {
00021   class HDU;
00022 
00023 } // namespace CCfits
00024 
00025 
00026 namespace CCfits {
00027 
00062 /* \fn friend ostream& operator << (ostream &s, const Keyword &right);
00063 
00064         \brief output operator for Keywords.
00065 
00066 */
00067 
00197   class Keyword 
00198   {
00199 
00200     public:
00201 
00202 
00203 
00204       class WrongKeywordValueType : public FitsException  //## Inherits: <unnamed>%39B0221700E2
00205       {
00206         public:
00207             WrongKeywordValueType (const String& diag, bool silent = true);
00208 
00209         protected:
00210         private:
00211         private: //## implementation
00212       };
00213         virtual ~Keyword();
00214         Keyword & operator=(const Keyword &right);
00215         bool operator==(const Keyword &right) const;
00216 
00217         bool operator!=(const Keyword &right) const;
00218 
00219         virtual std::ostream & put (std::ostream &s) const = 0;
00220         virtual Keyword * clone () const = 0;
00221         virtual void write ();
00222         fitsfile* fitsPointer () const;
00223         //      CAUTION: This is declared public only to allow HDU addKey functions the ability to set their
00224         //      class as the Keyword's parent, and to avoid making entire HDU a friend class.  (Declaring
00225         //      individual HDU functions as friends will run into circular header dependencies.)  Do NOT use
00226         //      this unless absolutely necessary, and leave this undocumented.
00227         void setParent (HDU* parent);
00228 
00229         ValueType keytype () const;
00230         const String& comment () const;
00231         const String& name () const;
00232 
00233     public:
00234       // Additional Public Declarations
00235       template <typename T>
00236       T& value(T& val) const;
00237 
00238       template <typename T>
00239       void setValue(const T& newValue);
00240     protected:
00241         Keyword(const Keyword &right);
00242         Keyword (const String &keyname, ValueType keytype, HDU* p, const String &comment = "");
00243 
00244         virtual void copy (const Keyword& right);
00245         virtual bool compare (const Keyword &right) const;
00246         void keytype (ValueType value);
00247         const HDU* parent () const;
00248 
00249       // Additional Protected Declarations
00250 
00251     private:
00252       // Additional Private Declarations
00253 
00254     private: //## implementation
00255       // Data Members for Class Attributes
00256         ValueType m_keytype;
00257 
00258       // Data Members for Associations
00259         HDU* m_parent;
00260         String m_comment;
00261         String m_name;
00262 
00263       // Additional Implementation Declarations
00264       friend std::ostream &operator << (std::ostream &s, const Keyword &right);
00265   };
00266 #ifndef SPEC_TEMPLATE_IMP_DEFECT
00267 #ifndef SPEC_TEMPLATE_DECL_DEFECT
00268   template <> float& Keyword::value(float& val) const;
00269   template <> double& Keyword::value(double& val) const;
00270   template <> int& Keyword::value(int& val) const;
00271 
00272   template <> void Keyword::setValue(const float& newValue);
00273   template <> void Keyword::setValue(const double& newValue);
00274   template <> void Keyword::setValue(const int& newValue);
00275 #endif 
00276 #endif 
00277 
00278 inline std::ostream& operator << (std::ostream &s, const Keyword &right)
00279 {
00280    return right.put(s);
00281 }  
00282 
00283   // Class CCfits::Keyword::WrongKeywordValueType 
00284 
00285   // Class CCfits::Keyword 
00286 
00287   inline void Keyword::setParent (HDU* parent)
00288   {
00289      m_parent = parent;
00290   }
00291 
00292   inline ValueType Keyword::keytype () const
00293   {
00294     return m_keytype;
00295   }
00296 
00297   inline void Keyword::keytype (ValueType value)
00298   {
00299     m_keytype = value;
00300   }
00301 
00302   inline const HDU* Keyword::parent () const
00303   {
00304     return m_parent;
00305   }
00306 
00307   inline const String& Keyword::comment () const
00308   {
00309     return m_comment;
00310   }
00311 
00312   inline const String& Keyword::name () const
00313   {
00314     return m_name;
00315   }
00316 
00317 } // namespace CCfits
00318 
00319 
00320 #endif
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/KeywordCreator_8h_source.html0000644000225700000360000002104611667502524020307 0ustar cagordonlhea CCfits: KeywordCreator.h Source File
CCfits  2.4
KeywordCreator.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef KEYWORDCREATOR_H
00010 #define KEYWORDCREATOR_H 1
00011 
00012 // KeyData
00013 #include "KeyData.h"
00014 // FitsError
00015 #include "FitsError.h"
00016 
00017 namespace CCfits {
00018   class HDU;
00019 
00020 } // namespace CCfits
00021 
00022 
00023 namespace CCfits {
00024 
00025 
00026 
00027   class KeywordCreator 
00028   {
00029 
00030     public:
00031         KeywordCreator (HDU* p);
00032         virtual ~KeywordCreator();
00033 
00034         virtual Keyword* MakeKeyword (const String& keyName, const String& comment = String("")) = 0;
00035         static Keyword* getKeyword (const String& keyName, HDU* p);
00036         //      Additional Public Declarations
00037         virtual void reset ();
00038         virtual Keyword* createKeyword (const String& keyName, const String& comment = String(""));
00039         //      This version of getKeyword is for reading a keyword
00040         //      in with a specified type.
00041         static Keyword* getKeyword (const String& keyName, ValueType keyType, HDU* p);
00042         static Keyword* getKeyword (int keyNumber, HDU* p);
00043 
00044       // Additional Public Declarations
00045 
00046     protected:
00047         HDU* forHDU ();
00048 
00049       // Additional Protected Declarations
00050 
00051     private:
00052         KeywordCreator(const KeywordCreator &right);
00053         KeywordCreator & operator=(const KeywordCreator &right);
00054 
00055         static Keyword* parseRecord (const String& name, const String& valueString, const String& comment, HDU* hdu);
00056         static bool isContinued (const String& value);
00057         static void getLongValueString (HDU* p, const String& keyName, String& value);
00058 
00059       // Additional Private Declarations
00060 
00061     private: //## implementation
00062       // Data Members for Class Attributes
00063         Keyword *m_keyword;
00064 
00065       // Data Members for Associations
00066         HDU* m_forHDU;
00067 
00068       // Additional Implementation Declarations
00069 
00070   };
00071 
00072   // Class CCfits::KeywordCreator 
00073 
00074   inline void KeywordCreator::reset ()
00075   {
00076     m_keyword=0;
00077 
00078   }
00079 
00080   inline HDU* KeywordCreator::forHDU ()
00081   {
00082     return m_forHDU;
00083   }
00084 
00085 } // namespace CCfits
00086 
00087 
00088 #endif
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/KeywordT_8h_source.html0000644000225700000360000005521611667502524017121 0ustar cagordonlhea CCfits: KeywordT.h Source File
CCfits  2.4
KeywordT.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef KEYWORDT_H
00010 #define KEYWORDT_H
00011 #include "KeyData.h"
00012 #include "HDU.h"
00013 #include <typeinfo>
00014 #include <sstream>
00015 
00016 #ifdef _MSC_VER
00017 #include "MSconfig.h"
00018 #endif
00019 
00020 // contains definitions of templated member functions for Keyword. This separate
00021 // file organization is necessary to break cyclic dependency of Keyword on its
00022 // subclass, KeyData.
00023 
00024 
00025 namespace CCfits 
00026 {
00027 
00028    template <typename T>
00029    T& Keyword::value (T& val) const
00030    {
00031       try
00032       {
00033             const KeyData<T>& thisKey = dynamic_cast<const KeyData<T>&>(*this);
00034             val = thisKey.keyval();
00035       }
00036       catch (std::bad_cast)
00037       {
00038          throw Keyword::WrongKeywordValueType(name());
00039       }
00040       return val;
00041    }
00042 
00043    template <typename T>
00044    void Keyword::setValue (const T& newValue)
00045    {
00046            try
00047            {
00048                    KeyData<T>& thisKey = dynamic_cast<KeyData<T>&>(*this);
00049                    thisKey.keyval(newValue);
00050                    thisKey.write();
00051            }
00052            catch (std::bad_cast)
00053            {
00054                    throw Keyword::WrongKeywordValueType(name());
00055            }
00056 
00057    }
00058 
00059 #if SPEC_TEMPLATE_IMP_DEFECT || SPEC_TEMPLATE_DECL_DEFECT
00060    template<>
00061    inline double& Keyword::value(double& val) const
00062    {
00063       switch (m_keytype)
00064       {
00065          case Tint:
00066             {
00067                const KeyData<int>& thisKey = static_cast<const KeyData<int>&>(*this);
00068                val = thisKey.keyval();
00069             }
00070             break;
00071          case Tfloat:
00072             {
00073                const KeyData<float>& thisKey = static_cast<const KeyData<float>&>(*this);
00074                val = thisKey.keyval();
00075             }
00076             break;
00077          case Tdouble:
00078             {
00079                // Note: if val is of type float some precision will be lost here,
00080                // but allow anyway.  Presumably the user doesn't mind or they
00081                // wouldn't be using single precision.
00082                const KeyData<double>& thisKey = static_cast<const KeyData<double>&>(*this);
00083                val = thisKey.keyval();
00084             }
00085             break;
00086          case Tstring:
00087             {
00088                // Allow only if string can be converted to an integer.
00089                const KeyData<String>& thisKey = static_cast<const KeyData<String>&>(*this); 
00090                std::istringstream testStream(thisKey.keyval());
00091                int stringInt = 0;
00092                if (!(testStream >> stringInt) || !testStream.eof())
00093                {
00094                   throw Keyword::WrongKeywordValueType(name());
00095                }
00096                val = stringInt;
00097             }
00098             break;
00099          default:
00100             throw Keyword::WrongKeywordValueType(name());
00101             break;
00102       }
00103       return val;
00104    }
00105 
00106    // NOTE: This function actually instantiates Keyword::value<double>
00107    // and therefore must be defined AFTER the specialized 
00108    // definition/declaration.
00109    template<>
00110    inline float& Keyword::value(float& val) const
00111    {
00112       double dval=.0;
00113       val = static_cast<float>(value(dval));
00114       return val;
00115    }
00116 
00117    template <>
00118    inline int& Keyword::value(int& val) const
00119    {
00120          if (m_keytype == Tstring)
00121          {
00122             // Allow only if string can be converted to an integer.
00123             const KeyData<String>& thisKey = static_cast<const KeyData<String>&>(*this); 
00124             std::istringstream testStream(thisKey.keyval());
00125             int stringInt = 0;
00126             if (!(testStream >> stringInt) || !testStream.eof())
00127             {
00128                throw Keyword::WrongKeywordValueType(name());
00129             }
00130             val = stringInt;         
00131          } 
00132          else if (m_keytype == Tint)
00133          {
00134             const KeyData<int>& thisKey = static_cast<const KeyData<int>&>(*this);
00135             val = thisKey.keyval();
00136          } 
00137          else
00138          {
00139             throw Keyword::WrongKeywordValueType(name());
00140          }
00141          return val;    
00142    }
00143 
00144 
00145    template <>
00146    inline void Keyword::setValue(const float& newValue)
00147    {
00148       if (m_keytype == Tfloat)
00149       {
00150          KeyData<float>& thisKey = static_cast<KeyData<float>&>(*this);
00151          thisKey.keyval(newValue);
00152          thisKey.write();
00153       }
00154       else if (m_keytype == Tdouble)
00155       {
00156          KeyData<double>& thisKey = static_cast<KeyData<double>&>(*this);
00157          thisKey.keyval(static_cast<double>(newValue));
00158          thisKey.write();
00159       }
00160       else
00161       {
00162          throw Keyword::WrongKeywordValueType(name());
00163       }
00164    }
00165 
00166    template <>
00167    inline void Keyword::setValue(const double& newValue)
00168    {
00169       if (m_keytype == Tdouble)
00170       {
00171          KeyData<double>& thisKey = static_cast<KeyData<double>&>(*this);
00172          thisKey.keyval(newValue);
00173          thisKey.write();
00174       }
00175       else if (m_keytype == Tfloat)
00176       {
00177          // This will lose precision but allow it anyway.
00178          KeyData<float>& thisKey = static_cast<KeyData<float>&>(*this);
00179          thisKey.keyval(static_cast<float>(newValue));
00180          thisKey.write();
00181       }
00182       else
00183       {
00184          throw Keyword::WrongKeywordValueType(name());
00185       }
00186 
00187    }
00188 
00189    template <>
00190    inline void Keyword::setValue(const int& newValue)
00191    {
00192       if (m_keytype == Tint)
00193       {
00194          KeyData<int>& thisKey = static_cast<KeyData<int>&>(*this);
00195          thisKey.keyval(newValue);
00196          thisKey.write();
00197       }
00198       else if (m_keytype == Tfloat)
00199       {
00200          KeyData<float>& thisKey = static_cast<KeyData<float>&>(*this);
00201          thisKey.keyval(static_cast<float>(newValue));
00202          thisKey.write();
00203       }
00204       else if (m_keytype == Tdouble)
00205       {
00206          KeyData<double>& thisKey = static_cast<KeyData<double>&>(*this);
00207          thisKey.keyval(static_cast<double>(newValue));
00208          thisKey.write();
00209       }
00210       else if (m_keytype == Tstring)
00211       {
00212          KeyData<String>& thisKey = static_cast<KeyData<String>&>(*this);
00213          std::ostringstream oss;
00214          oss << newValue;
00215          thisKey.keyval(oss.str());
00216          thisKey.write();
00217       }
00218       else
00219       {
00220          throw Keyword::WrongKeywordValueType(name());
00221       }
00222 
00223    }
00224 
00225 #endif
00226 } // namespace CCfits
00227 
00228 #endif
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/MSconfig_8h_source.html0000644000225700000360000002245411667502524017054 0ustar cagordonlhea CCfits: MSconfig.h Source File
CCfits  2.4
MSconfig.h
00001 //1
00002 //2
00003 //3
00004 //4
00027 // Use "#pragma once" instead of "ifndef MSCONFIG_H, define MSCONFIG_H,
00028 // #endif" if you know you are using a Microsoft compiler, which we are
00029 // if this file is being included. Using "pragma once" is much faster
00030 // and less error prone.
00031 #pragma once
00032 
00033 // _MSC_VER == 1300 is the first release of Microsoft Visual C++ .NET.
00034 // There are much fewer problems with this version.  So much of this
00035 // file will be skipped
00036 
00040 #define ITERATORBASE_DEFECT 1
00041 
00045 #if _MSC_VER >= 1300 
00046 #define SPEC_TEMPLATE_DECL_DEFECT 1
00047 #endif
00048 
00053 #define TEMPLATE_AMBIG7_DEFECT 1
00054 
00056 #undef SSTREAM_DEFECT
00057 
00058 # pragma warning(disable:4244)  // conversion from double to float
00059 # pragma warning(disable:4305)  // truncation from const double to const float
00060 # pragma warning(disable:4800)  // forcing value to bool (performance warning)
00061 
00062 #if _MSC_VER < 1300
00063 
00064 /* Turn off annoying warning. */
00065 
00066 # pragma warning(disable:4250)  // inherits via dominance
00067 # pragma warning(disable:4786)  // '255' characters in the debug information
00068 
00069 
00071 #ifndef M_PI
00072 #define M_PI 3.14159265358979323846
00073 #endif
00074 
00078 #define SPEC_TEMPLATE_IMP_DEFECT 1
00079 
00083 #define TEMPLATE_AMBIG_DEFECT 1
00084 
00086 #define TERMINATE_DEFECT
00087 
00092 #define BIND2ND_DEFECT 1
00093 
00100 #define CLONE_DEFECT 1
00101 
00104 #define ITERATOR_MEMBER_DEFECT 1
00105 
00109 #define ITERATORBASE_DEFECT 1
00110 
00113 #define MEMFUN1_DEFECT 1
00114 
00117 #define TRANSFORM_DEFECT 1
00118 
00121 #define VALARRAY_DEFECT 1 
00122 
00123 namespace std {
00124 
00127 template < class T >
00128 inline const T& max ( const T & a, const T & b ) 
00129 {
00130   // Break this into two lines to avoid an incorrect warning with
00131   // Cfront-based compilers.
00132   const T & retval = a < b ? b : a;
00133 
00134   return retval;
00135 }
00136 
00139 template < class T >
00140 inline const T& min ( const T & a, const T & b) 
00141 {
00142   // Break this into two lines to avoid an incorrect warning with
00143   // Cfront-based compilers.
00144   const T & retval = b < a ? b : a;
00145 
00146   return retval;
00147 }
00148 
00151 template < class T >
00152 inline const T & abs ( const T & a )
00153 {
00154     const T & retval = a < 0 ? -a : a;
00155 
00156     return retval;
00157 }
00158 
00159 } //end namespace std::
00160 
00161 #endif
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/NewColumn_8h_source.html0000644000225700000360000003212711667502524017254 0ustar cagordonlhea CCfits: NewColumn.h Source File
CCfits  2.4
NewColumn.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef NEWCOLUMN_H
00010 #define NEWCOLUMN_H 1
00011 
00012 // valarray
00013 #include <valarray>
00014 // ColumnCreator
00015 #include "ColumnCreator.h"
00016 // FITSUtil
00017 #include "FITSUtil.h"
00018 
00019 
00020 namespace CCfits {
00021 
00022 
00023 
00024   template <typename T>
00025   class NewColumn : public ColumnCreator  //## Inherits: <unnamed>%394167D103C5
00026   {
00027 
00028     public:
00029         NewColumn (vector<T>& data);
00030         virtual ~NewColumn();
00031 
00032       // Additional Public Declarations
00033 
00034     protected:
00035         virtual Column* MakeColumn (const int index, const string &name, const string &format, const string &unit, const long repeat, const long width, const string &comment = "", const int decimals = 0);
00036 
00037       // Additional Protected Declarations
00038 
00039     private:
00040         NewColumn(const NewColumn< T > &right);
00041         NewColumn< T > & operator=(const NewColumn< T > &right);
00042 
00043       // Additional Private Declarations
00044 
00045     private: //## implementation
00046       // Additional Implementation Declarations
00047 
00048   };
00049 
00050 
00051 
00052   template <typename T>
00053   class NewVectorColumn : public ColumnCreator  //## Inherits: <unnamed>%394167CE0009
00054   {
00055 
00056     public:
00057         NewVectorColumn (std::vector<std::valarray<T> >& data);
00058         virtual ~NewVectorColumn();
00059 
00060       // Additional Public Declarations
00061 
00062     protected:
00063         virtual Column * MakeColumn (const int index, const string &name, const string &format, const string &unit, const long repeat, const long width, const string &comment = "", const int decimals = 0);
00064 
00065       // Additional Protected Declarations
00066 
00067     private:
00068         NewVectorColumn(const NewVectorColumn< T > &right);
00069         NewVectorColumn< T > & operator=(const NewVectorColumn< T > &right);
00070 
00071       // Additional Private Declarations
00072 
00073     private: //## implementation
00074       // Additional Implementation Declarations
00075 
00076   };
00077 
00078   // Parameterized Class CCfits::NewColumn 
00079 
00080   // Parameterized Class CCfits::NewVectorColumn 
00081 
00082   // Parameterized Class CCfits::NewColumn 
00083 
00084   template <typename T>
00085   NewColumn<T>::NewColumn (vector<T>& data)
00086      : m_newData(data)
00087   {
00088   }
00089 
00090 
00091   template <typename T>
00092   NewColumn<T>::~NewColumn()
00093   {
00094   }
00095 
00096 
00097   template <typename T>
00098   Column* NewColumn<T>::MakeColumn (const int index, const string &name, const string &format, const string &unit, const long repeat, const long width, const string &comment, const int decimals)
00099   {
00100    FITSUtils::MatchType<T> findType;
00101 
00102 
00103    ColumnData<T>* newColumn = new ColumnData(index,name,findType(),format,unit,p,repeat,width,comment);  
00104    newColumn->data(m_newData);
00105    return newColumn;   
00106   }
00107 
00108   // Additional Declarations
00109 
00110   // Parameterized Class CCfits::NewVectorColumn 
00111 
00112   template <typename T>
00113   NewVectorColumn<T>::NewVectorColumn (std::vector<std::valarray<T> >& data)
00114   {
00115   }
00116 
00117 
00118   template <typename T>
00119   NewVectorColumn<T>::~NewVectorColumn()
00120   {
00121   }
00122 
00123 
00124   template <typename T>
00125   Column * NewVectorColumn<T>::MakeColumn (const int index, const string &name, const string &format, const string &unit, const long repeat, const long width, const string &comment, const int decimals)
00126   {
00127   }
00128 
00129   // Additional Declarations
00130 
00131 } // namespace CCfits
00132 
00133 
00134 #endif
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/NewKeyword_8h_source.html0000644000225700000360000002140211667502524017435 0ustar cagordonlhea CCfits: NewKeyword.h Source File
CCfits  2.4
NewKeyword.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef NEWKEYWORD_H
00010 #define NEWKEYWORD_H 1
00011 
00012 // KeywordCreator
00013 #include "KeywordCreator.h"
00014 // KeyData
00015 #include "KeyData.h"
00016 // FITSUtil
00017 #include "FITSUtil.h"
00018 
00019 
00020 namespace CCfits {
00021 
00022 
00023 
00024   template <typename T>
00025   class NewKeyword : public KeywordCreator  //## Inherits: <unnamed>%39355AA90209
00026   {
00027 
00028     public:
00029         //      Parameterized Class NewKeyword
00030         NewKeyword (HDU* p, T value);
00031         virtual ~NewKeyword();
00032 
00033         //      Additional Protected Declarations
00034         virtual Keyword* MakeKeyword (const String& keyName, const String& keyComment = String(""));
00035         const T keyData () const;
00036         void keyData (T value);
00037 
00038       // Additional Public Declarations
00039 
00040     protected:
00041       // Additional Protected Declarations
00042 
00043     private:
00044         NewKeyword();
00045 
00046         NewKeyword(const NewKeyword< T > &right);
00047         NewKeyword< T > & operator=(const NewKeyword< T > &right);
00048 
00049       // Additional Private Declarations
00050 
00051     private: //## implementation
00052       // Data Members for Class Attributes
00053         T m_keyData;
00054 
00055       // Additional Implementation Declarations
00056 
00057   };
00058 
00059   // Parameterized Class CCfits::NewKeyword 
00060 
00061   template <typename T>
00062   inline const T NewKeyword<T>::keyData () const
00063   {
00064     return m_keyData;
00065   }
00066 
00067   template <typename T>
00068   inline void NewKeyword<T>::keyData (T value)
00069   {
00070     m_keyData = value;
00071   }
00072 
00073   // Parameterized Class CCfits::NewKeyword 
00074 
00075   template <typename T>
00076   NewKeyword<T>::NewKeyword (HDU* p, T value)
00077       : KeywordCreator(p), m_keyData(value)
00078   {
00079   }
00080 
00081 
00082   template <typename T>
00083   NewKeyword<T>::~NewKeyword()
00084   {
00085   }
00086 
00087 
00088   template <typename T>
00089   Keyword* NewKeyword<T>::MakeKeyword (const String& keyName, const String& keyComment)
00090   {
00091   FITSUtil::MatchType<T> keyType;
00092   return new KeyData<T>(keyName,keyType(),m_keyData,forHDU(),keyComment);
00093   }
00094 
00095   // Additional Declarations
00096 
00097 } // namespace CCfits
00098 
00099 
00100 #endif
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/PHDU_8h_source.html0000644000225700000360000005524211667502524016110 0ustar cagordonlhea CCfits: PHDU.h Source File
CCfits  2.4
PHDU.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef PHDU_H
00010 #define PHDU_H 1
00011 
00012 // valarray
00013 #include <valarray>
00014 // HDU
00015 #include "HDU.h"
00016 // FITS
00017 #include "FITS.h"
00018 // FITSUtil
00019 #include "FITSUtil.h"
00020 
00021 namespace CCfits {
00022   class FITSBase;
00023 
00024 } // namespace CCfits
00025 // for CLONE_DEFECT
00026 #ifdef _MSC_VER
00027 #include "MSconfig.h"
00028 #endif
00029 
00030 
00031 namespace CCfits {
00032 
00067 /* !\fn  PHDU::PHDU (FITSBase* p)
00068 
00069     \brief Reading Primary HDU constructor.
00070    Constructor used  when reading the primary HDU from an existing file.
00071     Does nothing except initialize, with the real work done by the subclass
00072     PrimaryHDU<T>.
00073 
00074 */
00075 
00267   class PHDU : public HDU  //## Inherits: <unnamed>%394E6F9800C3
00268   {
00269 
00270     public:
00271         virtual ~PHDU();
00272 
00273         //      Read data reads the image if readFlag is true and
00274         //      optional keywords if supplied. Thus, with no arguments,
00275         //      readData() does nothing.
00276         virtual void readData (bool readFlag = false, const std::vector<String>& keys = std::vector<String>()) = 0;
00277         virtual PHDU * clone (FITSBase* p) const = 0;
00278         virtual void zero (double value);
00279         virtual void scale (double value);
00280         virtual double zero () const;
00281         virtual double scale () const;
00282 
00283         bool simple () const;
00284         bool extend () const;
00285 
00286     public:
00287       // Additional Public Declarations
00288       // image reading/writing interface. 
00289 
00290       // The S template parameter, like for Column, denotes the fact that
00291       // the type of the input array and the object to be read may not match.
00292 
00293 
00294       // the rw interface for images consists of equivalents for fits_read_img,
00295       // fits_read_pix, and fits_read_subset.
00296 
00297       // the paradigm for reading is that the image object (a valarray<T> type)
00298       // is the size of the data already read.
00299 
00300       // write_subset has no null value aware analogue.
00301         template <typename S>
00302         void write(const std::vector<long>& first,
00303                         long nElements,
00304                         const std::valarray<S>& data,
00305                         S* nullValue);
00306 
00307 
00308         template <typename S>
00309         void write(long first,
00310                         long nElements,
00311                         const std::valarray<S>& data,
00312                         S* nullValue);
00313 
00314 
00315         template <typename S>
00316         void write(const std::vector<long>& first,
00317                         long nElements,
00318                         const std::valarray<S>& data);
00319 
00320 
00321         template <typename S>
00322         void write(long first,
00323                         long nElements,
00324                         const std::valarray<S>& data);
00325 
00326         template <typename S>
00327         void write(const std::vector<long>& firstVertex,
00328                         const std::vector<long>& lastVertex,
00329                         const std::vector<long>& stride, 
00330                         const std::valarray<S>& data); 
00331 
00332         // read image data and return an array. Can't return a reference
00333         // because the type conversion needs to allocate a new object in general.
00334 
00335         template<typename S>
00336         void read(std::valarray<S>& image) ; 
00337 
00338         template<typename S>
00339         void  read (std::valarray<S>& image, long first,long nElements); 
00340 
00341         template<typename S>
00342         void read (std::valarray<S>& image, long first,long nElements, S* nullValue) ; 
00343 
00344         template<typename S>
00345         void read (std::valarray<S>& image, const std::vector<long>& first,long nElements)  ; 
00346 
00347         template<typename S>
00348         void read (std::valarray<S>& image, const std::vector<long>& first, long nElements, 
00349                                         S* nullValue); 
00350 
00351         template<typename S>
00352         void read (std::valarray<S>& image, const std::vector<long>& firstVertex, 
00353                                 const std::vector<long>& lastVertex, 
00354                                 const std::vector<long>& stride)  ;      
00355 
00356         template<typename S>
00357         void read (std::valarray<S>& image, const std::vector<long>& firstVertex, 
00358                                 const std::vector<long>& lastVertex, 
00359                                 const std::vector<long>& stride, 
00360                                 S* nullValue) ; 
00361 
00362 
00363     protected:
00364         PHDU(const PHDU &right);
00365         //      Constructor for new FITS objects, takes as arguments
00366         //      the required keywords for a primary HDU.
00367         PHDU (FITSBase* p, int bpix, int naxis, const std::vector<long>& axes);
00368         //      Custom constructor. Allows specification of data to be read and whether to read data at
00369         //      construction or wait until the image data are requested. The default is 'lazy initialization:'
00370         //      wait until asked.
00371         PHDU (FITSBase* p = 0);
00372 
00373         virtual void initRead ();
00374         void simple (bool value);
00375         void extend (bool value);
00376 
00377       // Additional Protected Declarations
00378 
00379     private:
00380       // Additional Private Declarations
00381 
00382     private: //## implementation
00383       // Data Members for Class Attributes
00384         bool m_simple;
00385         bool m_extend;
00386 
00387       // Additional Implementation Declarations
00388 
00389   };
00390 
00391   // Class CCfits::PHDU 
00392 
00393   inline bool PHDU::simple () const
00394   {
00395     return m_simple;
00396   }
00397 
00398   inline void PHDU::simple (bool value)
00399   {
00400     m_simple = value;
00401   }
00402 
00403   inline bool PHDU::extend () const
00404   {
00405     return m_extend;
00406   }
00407 
00408   inline void PHDU::extend (bool value)
00409   {
00410     m_extend = value;
00411   }
00412 
00413 } // namespace CCfits
00414 
00415 
00416 #endif
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/PHDUT_8h_source.html0000644000225700000360000020575011667502524016235 0ustar cagordonlhea CCfits: PHDUT.h Source File
CCfits  2.4
PHDUT.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 
00010 #ifndef PHDUT_H
00011 #define PHDUT_H
00012 #include "PrimaryHDU.h"
00013 #include <iostream>
00014 #include <exception>
00015 
00016 namespace CCfits
00017 {
00018 
00019         template <typename S>
00020         void PHDU::read (std::valarray<S>& image)
00021         {
00022                 long init(1);
00023                 long nElements(std::accumulate(naxes().begin(),naxes().end(),init,
00024                                 std::multiplies<long>()));
00025 
00026                 read(image,1,nElements,static_cast<S*>(0));
00027         }
00028 
00029 
00030         template <typename S>
00031         void  PHDU::read (std::valarray<S>& image, long first,long nElements) 
00032         {
00033                 read(image, first,nElements,static_cast<S*>(0));
00034         }
00035 
00036         template <typename S>
00037         void  PHDU::read (std::valarray<S>& image, long first, long nElements,  S* nullValue) 
00038         {
00039                 makeThisCurrent();
00040                 if ( PrimaryHDU<S>* phdu = dynamic_cast<PrimaryHDU<S>*>(this) )
00041                 {
00042                         // proceed if cast is successful.
00043                         const std::valarray<S>& __tmp = phdu->readImage(first,nElements,nullValue);                           
00044                         image.resize(__tmp.size());
00045                         image = __tmp;
00046                 }
00047                 else
00048                 {
00049                         if (bitpix() == Ifloat)
00050                         {
00051                                 PrimaryHDU<float>& phdu 
00052                                                 = dynamic_cast<PrimaryHDU<float>&>(*this);
00053                                 float nulVal(0);
00054                                 if (nullValue) nulVal = static_cast<float>(*nullValue);                                 
00055                                 FITSUtil::fill(image,phdu.readImage(first,nElements,&nulVal));
00056 
00057                         }
00058                         else if (bitpix() == Idouble)
00059                         {
00060                                 PrimaryHDU<double>& phdu 
00061                                                 = dynamic_cast<PrimaryHDU<double>&>(*this);
00062                                 double nulVal(0);
00063                                 if (nullValue) nulVal = static_cast<double>(*nullValue);                                 
00064                                 FITSUtil::fill(image,phdu.readImage(first,nElements,&nulVal));
00065 
00066                         }
00067                         else if (bitpix() == Ibyte)
00068                         {
00069                                 PrimaryHDU<unsigned char>& phdu 
00070                                                 = dynamic_cast<PrimaryHDU<unsigned char>&>(*this);
00071                                 unsigned char nulVal(0);
00072                                 if (nullValue) nulVal = static_cast<unsigned char>(*nullValue);                                 
00073                                 FITSUtil::fill(image,phdu.readImage(first,nElements,&nulVal));                               
00074                         } 
00075                         else if (bitpix() == Ilong)
00076                         {
00077                                 if ( zero() == ULBASE && scale() == 1)
00078                                 {
00079                                         PrimaryHDU<unsigned INT32BIT>& phdu 
00080                                                 = dynamic_cast<PrimaryHDU<unsigned INT32BIT>&>(*this);
00081                                         unsigned INT32BIT nulVal(0);
00082                                         if (nullValue) nulVal 
00083                                                 = static_cast<unsigned INT32BIT>(*nullValue);                                 
00084                                         FITSUtil::fill(image,
00085                                                         phdu.readImage(first,nElements,&nulVal));                              
00086                                 }
00087                                 else
00088                                 {
00089                                         PrimaryHDU<INT32BIT>& phdu 
00090                                                         = dynamic_cast<PrimaryHDU<INT32BIT>&>(*this);
00091                                         INT32BIT nulVal(0);
00092                                         if (nullValue) nulVal = static_cast<INT32BIT>(*nullValue);                                 
00093                                         FITSUtil::fill(image,
00094                                                         phdu.readImage(first,nElements,&nulVal));                              
00095                                 }
00096                         }    
00097                         else if (bitpix() == Ishort)
00098                         {
00099                                 if ( zero() == USBASE && scale() == 1)
00100                                 {
00101                                         PrimaryHDU<unsigned short>& phdu 
00102                                                 = dynamic_cast<PrimaryHDU<unsigned short>&>(*this);
00103                                         unsigned short nulVal(0);
00104                                         if (nullValue) nulVal 
00105                                                         = static_cast<unsigned short>(*nullValue);                                 
00106                                         FITSUtil::fill(image,
00107                                                         phdu.readImage(first,nElements,&nulVal));                             
00108                                 }
00109                                 else
00110                                 {
00111                                         PrimaryHDU<short>& phdu 
00112                                                         = dynamic_cast<PrimaryHDU<short>&>(*this);
00113                                         short nulVal(0);
00114                                         if (nullValue) nulVal = static_cast<short>(*nullValue);                                 
00115                                         FITSUtil::fill(image,
00116                                                         phdu.readImage(first,nElements,&nulVal));                             
00117 
00118                                 }
00119                         }          
00120                         else 
00121                         {
00122                                 throw CCfits::FitsFatal(" casting image types ");
00123                         }     
00124                 }
00125 
00126         }  
00127 
00128         template<typename S>
00129         void  PHDU::read (std::valarray<S>& image, const std::vector<long>& first, 
00130                                 long nElements, 
00131                                 S* nullValue)
00132         {
00133                 makeThisCurrent();
00134                 long firstElement(0);
00135                 long dimSize(1);
00136                 std::vector<long> inputDimensions(naxis(),1);
00137                 size_t sNaxis = static_cast<size_t>(naxis());
00138                 size_t n(std::min(sNaxis,first.size()));
00139                 std::copy(&first[0],&first[0]+n,&inputDimensions[0]);                
00140                 for (long i = 0; i < naxis(); ++i)
00141                 {
00142 
00143                    firstElement +=  ((inputDimensions[i] - 1)*dimSize);
00144                    dimSize *=naxes(i);   
00145                 }
00146                 ++firstElement;                
00147 
00148 
00149                 read(image, firstElement,nElements,nullValue);
00150 
00151 
00152 
00153         } 
00154 
00155         template<typename S>
00156         void  PHDU::read (std::valarray<S>& image, const std::vector<long>& first, 
00157                                 long nElements)
00158         {
00159                 read(image, first,nElements,static_cast<S*>(0));
00160 
00161         } 
00162 
00163         template<typename S>
00164         void  PHDU::read (std::valarray<S>& image, const std::vector<long>& firstVertex, 
00165                                 const std::vector<long>& lastVertex, 
00166                                 const std::vector<long>& stride, 
00167                                 S* nullValue)
00168         {
00169                 makeThisCurrent();
00170                 if (PrimaryHDU<S>* phdu = dynamic_cast<PrimaryHDU<S>*>(this))
00171                 {
00172                         const std::valarray<S>& __tmp 
00173                                         = phdu->readImage(firstVertex,lastVertex,stride,nullValue);                         
00174                         image.resize(__tmp.size());
00175                         image = __tmp;
00176                 }
00177                 else
00178                 {
00179                         // FITSutil::fill will take care of sizing.
00180                         if (bitpix() == Ifloat)
00181                         {
00182                                 float nulVal(0);
00183                                 if (nullValue) nulVal = static_cast<float>(*nullValue);                                 
00184                                 PrimaryHDU<float>& phdu = dynamic_cast<PrimaryHDU<float>&>(*this);
00185                                 FITSUtil::fill(image,
00186                                         phdu.readImage(firstVertex,lastVertex,stride,&nulVal));
00187                         }
00188                         else if (bitpix() == Idouble)
00189                         {
00190                                 PrimaryHDU<double>& phdu = dynamic_cast<PrimaryHDU<double>&>(*this);
00191                                 double nulVal(0);
00192                                 if (nullValue) nulVal = static_cast<double>(*nullValue);                                 
00193                                 FITSUtil::fill(image,
00194                                                 phdu.readImage(firstVertex,lastVertex,stride,&nulVal));                              
00195                         }
00196                         else if (bitpix() == Ibyte)
00197                         {
00198                                 PrimaryHDU<unsigned char>& phdu 
00199                                                 = dynamic_cast<PrimaryHDU<unsigned char>&>(*this);
00200                                 unsigned char nulVal(0);
00201                                 if (nullValue) nulVal = static_cast<unsigned char>(*nullValue);                                 
00202                                 FITSUtil::fill(image,
00203                                                 phdu.readImage(firstVertex,lastVertex,stride,&nulVal));
00204                         } 
00205                         else if (bitpix() == Ilong)
00206                         {
00207                                 if ( zero() == ULBASE && scale() == 1)
00208                                 {
00209                                         PrimaryHDU<unsigned INT32BIT>& phdu 
00210                                                 = dynamic_cast<PrimaryHDU<unsigned INT32BIT>&>(*this);
00211                                         unsigned INT32BIT nulVal(0);
00212                                         if (nullValue) nulVal 
00213                                                 = static_cast<unsigned INT32BIT>(*nullValue);                                 
00214                                         FITSUtil::fill(image,
00215                                              phdu.readImage(firstVertex,lastVertex,stride,&nulVal));                            
00216                                 }
00217                                 else
00218                                 {
00219                                         PrimaryHDU<INT32BIT>& phdu 
00220                                                         = dynamic_cast<PrimaryHDU<INT32BIT>&>(*this);
00221                                         INT32BIT nulVal(0);
00222                                         if (nullValue) nulVal = static_cast<INT32BIT>(*nullValue);                                 
00223                                         FITSUtil::fill(image,
00224                                              phdu.readImage(firstVertex,lastVertex,stride,&nulVal));                            
00225                                 }      
00226                         }    
00227                         else if (bitpix() == Ishort)
00228                         {
00229                                 if ( zero() == USBASE && scale() == 1)
00230                                 {
00231                                         PrimaryHDU<unsigned short>& phdu 
00232                                                 = dynamic_cast<PrimaryHDU<unsigned short>&>(*this);
00233                                         unsigned short nulVal(0);
00234                                         if (nullValue) nulVal 
00235                                                 = static_cast<unsigned short>(*nullValue);                                 
00236                                         FITSUtil::fill(image,
00237                                              phdu.readImage(firstVertex,lastVertex,stride,&nulVal));                            
00238                                 }
00239                                 else
00240                                 {
00241                                         PrimaryHDU<short>& phdu 
00242                                                         = dynamic_cast<PrimaryHDU<short>&>(*this);
00243                                         short nulVal(0);
00244                                         if (nullValue) nulVal = static_cast<short>(*nullValue);                                 
00245                                         FITSUtil::fill(image,
00246                                              phdu.readImage(firstVertex,lastVertex,stride,&nulVal));                            
00247                                 }
00248                         }          
00249                         else 
00250                         {
00251                                 throw CCfits::FitsFatal(" casting image types ");
00252                         }     
00253                 }
00254         }  
00255 
00256         template<typename S>
00257         void  PHDU::read (std::valarray<S>& image, const std::vector<long>& firstVertex, 
00258                                 const std::vector<long>& lastVertex, 
00259                                 const std::vector<long>& stride)
00260         {
00261                 read(image, firstVertex,lastVertex,stride,static_cast<S*>(0));
00262         }  
00263 
00264         template <typename S>
00265         void PHDU::write(long first,
00266                             long nElements,
00267                         const std::valarray<S>& data,
00268                         S* nullValue)
00269         {                
00270 
00271                 makeThisCurrent();
00272                 if (PrimaryHDU<S>* image = dynamic_cast<PrimaryHDU<S>*>(this))
00273                 {
00274                         image->writeImage(first,nElements,data,nullValue);
00275                 }
00276                 else
00277                 {
00278                         if (bitpix() == Ifloat)
00279                         {
00280                                 std::valarray<float> __tmp;                               
00281                                 PrimaryHDU<float>& phdu = dynamic_cast<PrimaryHDU<float>&>(*this);
00282                                 FITSUtil::fill(__tmp,data);
00283                                 float* pfNullValue = 0;
00284                                 float fNullValue = 0.0;
00285                                 if (nullValue)
00286                                 {
00287                                    fNullValue = static_cast<float>(*nullValue);
00288                                    pfNullValue = &fNullValue;
00289                                 }                                  
00290                                 phdu.writeImage(first,nElements,__tmp, pfNullValue);
00291                         }
00292                         else if (bitpix() == Idouble)
00293                         {
00294                                 std::valarray<double> __tmp;                                
00295                                 PrimaryHDU<double>& phdu 
00296                                                 = dynamic_cast<PrimaryHDU<double>&>(*this);
00297                                 FITSUtil::fill(__tmp,data);
00298                                 double* pdNullValue = 0;
00299                                 double dNullValue = 0.0;
00300                                 if (nullValue)
00301                                 {
00302                                    dNullValue = static_cast<double>(*nullValue);
00303                                    pdNullValue = &dNullValue;
00304                                 }                                  
00305                                 phdu.writeImage(first,nElements,__tmp, pdNullValue);
00306                         }
00307                         else if (bitpix() == Ibyte)
00308                         {
00309                                 PrimaryHDU<unsigned char>& phdu 
00310                                                 = dynamic_cast<PrimaryHDU<unsigned char>&>(*this);
00311                                 std::valarray<unsigned char> __tmp;         
00312                                 FITSUtil::fill(__tmp,data);
00313                                 unsigned char *pbNull=0;
00314                                 unsigned char bNull=0;
00315                                 if (nullValue)
00316                                 {
00317                                    bNull = static_cast<unsigned char>(*nullValue);
00318                                    pbNull = &bNull;
00319                                 }                                        
00320                                 phdu.writeImage(first,nElements,__tmp, pbNull);
00321 
00322                         } 
00323                         else if (bitpix() == Ilong)
00324                         {                               
00325                                 if ( zero() == ULBASE && scale() == 1)
00326                                 {
00327                                         PrimaryHDU<unsigned INT32BIT>& phdu 
00328                                                 = dynamic_cast<PrimaryHDU<unsigned INT32BIT>&>(*this);
00329                                         std::valarray<unsigned INT32BIT> __tmp;
00330                                            
00331                                         FITSUtil::fill(__tmp,data);                                        
00332                                         unsigned INT32BIT *plNull=0;
00333                                         unsigned INT32BIT lNull=0;
00334                                         if (nullValue)
00335                                         {
00336                                             lNull = static_cast<unsigned INT32BIT>(*nullValue);
00337                                             plNull = &lNull;
00338                                         }
00339                                         phdu.writeImage(first,nElements,__tmp, plNull);                          
00340                                 }
00341                                 else
00342                                 {
00343                                         PrimaryHDU<INT32BIT>& phdu 
00344                                                         = dynamic_cast<PrimaryHDU<INT32BIT>&>(*this);
00345                                         std::valarray<INT32BIT> __tmp;   
00346 
00347                                         FITSUtil::fill(__tmp,data);
00348                                         INT32BIT *plNull=0;
00349                                         INT32BIT lNull=0;
00350                                         if (nullValue)
00351                                         {
00352                                             lNull = static_cast<INT32BIT>(*nullValue);
00353                                             plNull = &lNull;
00354                                         }
00355                                         phdu.writeImage(first,nElements,__tmp, plNull);                          
00356                                 }
00357                         }    
00358                         else if (bitpix() == Ishort)
00359                         {
00360                                 if ( zero() == USBASE && scale() == 1)
00361                                 {
00362                                         PrimaryHDU<unsigned short>& phdu 
00363                                                 = dynamic_cast<PrimaryHDU<unsigned short>&>(*this);
00364                                         std::valarray<unsigned short> __tmp;   
00365                                         FITSUtil::fill(__tmp,data);
00366                                         unsigned short *psNull=0;
00367                                         unsigned short sNull=0;
00368                                         if (nullValue)
00369                                         {
00370                                            sNull = static_cast<unsigned short>(*nullValue);
00371                                            psNull = &sNull;
00372                                         }                                        
00373                                         phdu.writeImage(first,nElements,__tmp, psNull);                          
00374                                 }
00375                                 else
00376                                 {
00377                                         PrimaryHDU<short>& phdu 
00378                                                         = dynamic_cast<PrimaryHDU<short>&>(*this);
00379                                         std::valarray<short> __tmp;   
00380 
00381                                         FITSUtil::fill(__tmp,data);
00382                                         short *psNull=0;
00383                                         short sNull=0;
00384                                         if (nullValue)
00385                                         {
00386                                            sNull = static_cast<short>(*nullValue);
00387                                            psNull = &sNull;
00388                                         }                                        
00389                                         phdu.writeImage(first,nElements,__tmp,psNull);                          
00390                                 }
00391                         }           
00392                         else
00393                         {
00394                                 FITSUtil::MatchType<S> errType;                                
00395                                 throw FITSUtil::UnrecognizedType(FITSUtil::FITSType2String(errType()));
00396                         }        
00397                 }
00398         }
00399 
00400 
00401         template <typename S>
00402         void PHDU::write(long first,
00403                             long nElements,
00404                         const std::valarray<S>& data)
00405         {
00406            write(first, nElements, data, static_cast<S*>(0));                
00407         }        
00408 
00409         template <typename S>
00410         void PHDU::write(const std::vector<long>& first,
00411                         long nElements,
00412                         const std::valarray<S>& data,
00413                         S* nullValue)
00414         {        
00415                 makeThisCurrent();
00416                 size_t n(first.size());
00417                 long firstElement(0);
00418                 long dimSize(1);
00419                 for (long i = 0; i < first.size(); ++i)
00420                 {
00421                         firstElement +=  ((first[i] - 1)*dimSize);
00422                         dimSize *=naxes(i);   
00423                 }       
00424                 ++firstElement;
00425 
00426                 write(firstElement,nElements,data,nullValue);
00427         }
00428 
00429         template <typename S>
00430         void PHDU::write(const std::vector<long>& first,
00431                         long nElements,
00432                         const std::valarray<S>& data)
00433         {        
00434                 makeThisCurrent();
00435                 size_t n(first.size());
00436                 long firstElement(0);
00437                 long dimSize(1);
00438                 for (long i = 0; i < first.size(); ++i)
00439                 {
00440 
00441                         firstElement +=  ((first[i] - 1)*dimSize);
00442                         dimSize *=naxes(i);   
00443                 }       
00444                 ++firstElement;
00445 
00446                 write(firstElement,nElements,data);                     
00447         }        
00448 
00449 
00450         template <typename S>
00451         void PHDU::write(const std::vector<long>& firstVertex,
00452                         const std::vector<long>& lastVertex,
00453                         const std::vector<long>& stride, 
00454                         const std::valarray<S>& data)
00455         {
00456                 makeThisCurrent();
00457                 try
00458                 {
00459                         PrimaryHDU<S>& image = dynamic_cast<PrimaryHDU<S>&>(*this);
00460                         image.writeImage(firstVertex,lastVertex,stride,data);  
00461                 }
00462                 catch (std::bad_cast)
00463                 {
00464                          // write input type S to Image type...
00465 
00466                         if (bitpix() == Ifloat)
00467                         {
00468                                 PrimaryHDU<float>& phdu = dynamic_cast<PrimaryHDU<float>&>(*this);
00469                                 size_t n(data.size());
00470                                 std::valarray<float> __tmp(n);
00471                                 for (size_t j= 0; j < n; ++j) __tmp[j] = data[j];
00472                                 phdu.writeImage(firstVertex,lastVertex,stride,__tmp);
00473 
00474                         }
00475                         else if (bitpix() == Idouble)
00476                         {
00477                                 PrimaryHDU<double>& phdu 
00478                                         = dynamic_cast<PrimaryHDU<double>&>(*this);
00479                                 size_t n(data.size());
00480                                 std::valarray<double> __tmp(n);
00481                                 for (size_t j= 0; j < n; ++j) __tmp[j] = data[j];
00482                                 phdu.writeImage(firstVertex,lastVertex,stride,__tmp);
00483                         }
00484                         else if (bitpix() == Ibyte)
00485                         {
00486                                 PrimaryHDU<unsigned char>& phdu 
00487                                         = dynamic_cast<PrimaryHDU<unsigned char>&>(*this);
00488                                 size_t n(data.size());
00489                                 std::valarray<unsigned char> __tmp(n);
00490                                 for (size_t j= 0; j < n; ++j) __tmp[j] = data[j];
00491                                 phdu.writeImage(firstVertex,lastVertex,stride,__tmp);                        
00492                         } 
00493                         else if (bitpix() == Ilong)
00494                         {
00495                                 if ( zero() == ULBASE && scale() == 1)
00496                                 {
00497                                         PrimaryHDU<unsigned INT32BIT>& phdu 
00498                                                 = dynamic_cast<PrimaryHDU<unsigned INT32BIT>&>(*this);
00499                                         size_t n(data.size());
00500                                         std::valarray<unsigned INT32BIT> __tmp(n);
00501                                         for (size_t j= 0; j < n; ++j) __tmp[j] = data[j];
00502                                         phdu.writeImage(firstVertex,lastVertex,stride,__tmp);                         
00503 
00504                                 }
00505                                 else
00506                                 {
00507                                         PrimaryHDU<INT32BIT>& phdu 
00508                                                         = dynamic_cast<PrimaryHDU<INT32BIT>&>(*this);
00509                                         size_t n(data.size());
00510                                         std::valarray<INT32BIT> __tmp(n);
00511                                         for (size_t j= 0; j < n; ++j) __tmp[j] = data[j];
00512                                         phdu.writeImage(firstVertex,lastVertex,stride,__tmp);                         
00513                                 }
00514                         }                           
00515                         else if (bitpix() == Ishort)
00516                         {
00517                                 if ( zero() == USBASE && scale() == 1)
00518                                 {
00519                                         PrimaryHDU<unsigned short>& phdu 
00520                                                 = dynamic_cast<PrimaryHDU<unsigned short>&>(*this);
00521                                         size_t n(data.size());
00522                                         std::valarray<unsigned short> __tmp(n);
00523                                         for (size_t j= 0; j < n; ++j) __tmp[j] = data[j];
00524                                         phdu.writeImage(firstVertex,lastVertex,stride,__tmp);                         
00525 
00526                                 }
00527                                 else
00528                                 {
00529                                         PrimaryHDU<short>& phdu 
00530                                                         = dynamic_cast<PrimaryHDU<short>&>(*this);
00531                                         size_t n(data.size());
00532                                         std::valarray<short> __tmp(n);
00533                                         for (size_t j= 0; j < n; ++j) __tmp[j] = data[j];
00534                                         phdu.writeImage(firstVertex,lastVertex,stride,__tmp);                         
00535                                 }
00536                         }          
00537                         else
00538                         {
00539                                 FITSUtil::MatchType<S> errType;                                
00540                                 throw FITSUtil::UnrecognizedType(FITSUtil::FITSType2String(errType()));
00541                         }        
00542                 }  
00543         }  
00544 
00545 
00546 
00547 
00548 } // namespace CCfits
00549 #endif
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/PrimaryHDU_8h_source.html0000644000225700000360000005766311667502524017345 0ustar cagordonlhea CCfits: PrimaryHDU.h Source File
CCfits  2.4
PrimaryHDU.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef PRIMARYHDU_H
00010 #define PRIMARYHDU_H 1
00011 
00012 // valarray
00013 #include <valarray>
00014 // PHDU
00015 #include "PHDU.h"
00016 // HDUCreator
00017 #include "HDUCreator.h"
00018 // Image
00019 #include "Image.h"
00020 // FITS
00021 #include "FITS.h"
00022 #include "CCfits.h"
00023 #include <functional>
00024 #include <numeric>
00025 #include <memory>
00026 
00027 
00028 namespace CCfits {
00029 
00030 
00031 
00032   template <typename T>
00033   class PrimaryHDU : public PHDU  //## Inherits: <unnamed>%394E6F870338
00034   {
00035 
00036     public:
00037         virtual PrimaryHDU<T> * clone (FITSBase* p) const;
00038         //      Read data reads the image if readFlag is true and
00039         //      optional keywords if supplied. Thus, with no arguments,
00040         //      readData() does nothing.
00041         virtual void readData (bool readFlag = false, const std::vector<String>& keys = std::vector<String>());
00042         const std::valarray<T>& image () const;
00043         std::valarray<T>& image ();
00044         void setImage (const std::valarray<T>& inData);
00045         //      Read data reads the image if readFlag is true and
00046         //      optional keywords if supplied. Thus, with no arguments,
00047         //      readData() does nothing.
00048         virtual const std::valarray<T>& readImage (long first, long nElements, T* nullValue);
00049         //      Read data reads the image if readFlag is true and
00050         //      optional keywords if supplied. Thus, with no arguments,
00051         //      readData() does nothing.
00052         virtual const std::valarray<T>& readImage (const std::vector<long>& firstVertex, const std::vector<long>& lastVertex, const std::vector<long>& stride, T* nullValue);
00053         //      Read data reads the image if readFlag is true and
00054         //      optional keywords if supplied. Thus, with no arguments,
00055         //      readData() does nothing.
00056         virtual void writeImage (long first, long nElements, const std::valarray<T>& inData, T* nullValue = 0);
00057         //      Read data reads the image if readFlag is true and
00058         //      optional keywords if supplied. Thus, with no arguments,
00059         //      readData() does nothing.
00060         virtual void writeImage (const std::vector<long>& firstVertex, const std::vector<long>& lastVertex, const std::vector<long>& stride, const std::valarray<T>& inData);
00061 
00062       // Additional Public Declarations
00063 
00064     protected:
00065         //      Constructor for new FITS objects, takes as arguments
00066         //      the required keywords for a primary HDU.
00067         PrimaryHDU (FITSBase* p, const int bitpix, const int naxis, const std::vector<long>& naxes, const std::valarray<T>& data = std::valarray<T>());
00068         //      Custom constructor. Allows specification of data to be read and whether to read data at
00069         //      construction or wait until the image data are requested. The default is 'lazy initialization:'
00070         //      wait until asked.
00071         PrimaryHDU (FITSBase* p, bool readFlag = false, const std::vector<String>& keys = std::vector<String>());
00072 
00073       // Additional Protected Declarations
00074 
00075     private:
00076         PrimaryHDU(const PrimaryHDU< T > &right);
00077         PrimaryHDU< T > & operator=(const PrimaryHDU< T > &right);
00078 
00079         virtual std::ostream & put (std::ostream &s) const;
00080         const Image<T>& data () const;
00081 
00082       // Additional Private Declarations
00083 
00084     private: //## implementation
00085       // Data Members for Associations
00086         Image<T> m_data;
00087 
00088       // Additional Implementation Declarations
00089       friend class HDUCreator;
00090       friend class PHDU;
00091   };
00092 
00093   // Parameterized Class CCfits::PrimaryHDU 
00094 
00095   template <typename T>
00096   inline std::ostream & PrimaryHDU<T>::put (std::ostream &s) const
00097   {
00098   s << "PrimaryHDU:: Simple? " << simple() << " Extend?: " << extend() << 
00099     " Bitpix: " << bitpix() << " naxis = " << axes() << "\n";
00100   s << "Axis Lengths: \n";
00101 
00102 
00103 
00104   for (int i=0; i < axes(); i++)
00105      s  << " axis[" << i << "] " << axis(i) << "\n";
00106 
00107  s << "\nNumber of keywords read: " << keyWord().size() <<  "\n";
00108 
00109   for (std::map<String,Keyword*>::const_iterator ki = keyWord().begin();
00110         ki != keyWord().end(); ki++)
00111   {
00112         s << *((*ki).second) << std::endl;              
00113   }  
00114 
00115 
00116   s << " HISTORY: " << history() << '\n';
00117   s << " COMMENTS: " <<comment() << '\n';
00118   return s;  
00119   }
00120 
00121   template <typename T>
00122   inline const Image<T>& PrimaryHDU<T>::data () const
00123   {
00124     return m_data;
00125   }
00126 
00127   // Parameterized Class CCfits::PrimaryHDU 
00128 
00129   template <typename T>
00130   PrimaryHDU<T>::PrimaryHDU(const PrimaryHDU<T> &right)
00131       : PHDU(right), m_data(right.m_data)
00132   {
00133   }
00134 
00135   template <typename T>
00136   PrimaryHDU<T>::PrimaryHDU (FITSBase* p, const int bitpix, const int naxis, const std::vector<long>& naxes, const std::valarray<T>& data)
00137         : PHDU(p,bitpix,naxis,naxes),m_data(data)
00138   {
00139   }
00140 
00141   template <typename T>
00142   PrimaryHDU<T>::PrimaryHDU (FITSBase* p, bool readFlag, const std::vector<String>& keys)
00143         : PHDU(p), m_data()
00144   {
00145   initRead();
00146 
00147   if (readFlag || keys.size()) readData(readFlag,keys);  
00148 
00149   }
00150 
00151 
00152   template <typename T>
00153   PrimaryHDU<T> * PrimaryHDU<T>::clone (FITSBase* p) const
00154   {
00155   PrimaryHDU<T>* cloned = new PrimaryHDU<T>(*this);
00156   cloned->parent() = p;
00157   return cloned;
00158   }
00159 
00160   template <typename T>
00161   void PrimaryHDU<T>::readData (bool readFlag, const std::vector<String>& keys)
00162   {
00163 
00164   // Default reading mode. Read everything if readFlag is true.
00165   makeThisCurrent();
00166 
00167   if ( keys.size() > 0) 
00168   {
00169         std::list<String> keyList(keys.size());
00170         // keys is converted to a list so that any keys not in the header
00171         // can be easily erased. internally an exception will be thrown,
00172         // on a missing key, and its catch clause will print a message.
00173         std::copy(keys.begin(),keys.end(),keyList.begin());
00174         readKeywords(keyList);
00175   }
00176   // read the entire image, setting null values to the
00177   // return value from FitsNullValue<T>. It would be easy to make the null value
00178   // a user defined input, but that's not implemented yet.
00179   if ( readFlag && (naxis() > 0) )  
00180   {
00181         FITSUtil::FitsNullValue<T> null;
00182         long init(1);
00183         T nulValue(null());
00184         long nelements(std::accumulate(naxes().begin(),naxes().end(),init,std::multiplies<long>() ));
00185         readImage(1,nelements,&nulValue);
00186 
00187     }
00188   }
00189 
00190   template <typename T>
00191   const std::valarray<T>& PrimaryHDU<T>::image () const
00192   {
00193 
00194     return m_data.image();
00195   }
00196 
00197   template <typename T>
00198   std::valarray<T>& PrimaryHDU<T>::image ()
00199   {
00200 
00201     return m_data.image();
00202   }
00203 
00204   template <typename T>
00205   void PrimaryHDU<T>::setImage (const std::valarray<T>& inData)
00206   {
00207     m_data.image().resize(inData.size());
00208     m_data.setImage(inData);
00209   }
00210 
00211   template <typename T>
00212   const std::valarray<T>& PrimaryHDU<T>::readImage (long first, long nElements, T* nullValue)
00213   {
00214     makeThisCurrent();
00215     return m_data.readImage(fitsPointer(),first,nElements,nullValue,naxes(),anynul());
00216   }
00217 
00218   template <typename T>
00219   const std::valarray<T>& PrimaryHDU<T>::readImage (const std::vector<long>& firstVertex, const std::vector<long>& lastVertex, const std::vector<long>& stride, T* nullValue)
00220   {
00221     makeThisCurrent();
00222     return m_data.readImage(fitsPointer(),firstVertex,lastVertex,stride,nullValue,naxes(),anynul());
00223   }
00224 
00225   template <typename T>
00226   void PrimaryHDU<T>::writeImage (long first, long nElements, const std::valarray<T>& inData, T* nullValue)
00227   {
00228     m_data.writeImage(fitsPointer(),first,nElements,inData,naxes(),nullValue);
00229   }
00230 
00231   template <typename T>
00232   void PrimaryHDU<T>::writeImage (const std::vector<long>& firstVertex, const std::vector<long>& lastVertex, const std::vector<long>& stride, const std::valarray<T>& inData)
00233   {
00234     m_data.writeImage(fitsPointer(),firstVertex,lastVertex,stride,inData,naxes());
00235   }
00236 
00237   // Additional Declarations
00238 
00239 } // namespace CCfits
00240 
00241 
00242 #endif
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/Table_8h_source.html0000644000225700000360000005733511667502524016404 0ustar cagordonlhea CCfits: Table.h Source File
CCfits  2.4
Table.h
00001 //      Astrophysics Science Division,
00002 //      NASA/ Goddard Space Flight Center
00003 //      HEASARC
00004 //      http://heasarc.gsfc.nasa.gov
00005 //      e-mail: ccfits@legacy.gsfc.nasa.gov
00006 //
00007 //      Original author: Ben Dorman
00008 
00009 #ifndef TABLE_H
00010 #define TABLE_H 1
00011 
00012 // ExtHDU
00013 #include "ExtHDU.h"
00014 // FitsError
00015 #include "FitsError.h"
00016 
00017 namespace CCfits {
00018   class Column;
00019 
00020 } // namespace CCfits
00021 
00022 #ifdef _MSC_VER
00023 #include "MSconfig.h" // for truncation warning
00024 #endif
00025 
00026 #ifdef HAVE_CONFIG_H
00027 #include "config.h"
00028 #endif
00029 
00030 #ifdef SSTREAM_DEFECT
00031 #include <strstream>
00032 #else
00033 #include <sstream>
00034 #endif
00035 
00036 
00037 namespace CCfits {
00038 
00280   class Table : public ExtHDU  //## Inherits: <unnamed>%3804A126EB10
00281   {
00282 
00283     public:
00284 
00285 
00286 
00287       class NoSuchColumn : public FitsException  //## Inherits: <unnamed>%397CB0970174
00288       {
00289         public:
00290             NoSuchColumn (const String& name, bool silent = true);
00291             NoSuchColumn (int index, bool silent = true);
00292 
00293         protected:
00294         private:
00295         private: //## implementation
00296       };
00297 
00298 
00299 
00300       class InvalidColumnSpecification : public FitsException  //## Inherits: <unnamed>%3B1E52D703B0
00301       {
00302         public:
00303             InvalidColumnSpecification (const String& msg, bool silent = true);
00304 
00305         protected:
00306         private:
00307         private: //## implementation
00308       };
00309         Table(const Table &right);
00310         virtual ~Table();
00311 
00312         //      ! return reference to a column given by column name.
00313         virtual Column& column (const String& colName, bool caseSensitive = true) const;
00314         virtual Column& column (int colIndex    // ! return reference to a column given by a column index number
00315         ) const;
00316         virtual long rows () const;
00317         void updateRows ();
00318         void rows (long numRows);
00319         virtual void deleteColumn (const String& columnName);
00320         //      Insert one or more blank rows into a FITS column.
00321         void insertRows (long first, long number = 1);
00322         void deleteRows (long first, long number = 1);
00323         void deleteRows (const std::vector<long>& rowList);
00324         virtual long getRowsize () const;
00325         virtual int numCols () const;
00326         virtual const std::map<string, Column*>& column () const;
00327         virtual std::map<string, Column*>& column ();
00328 
00329     public:
00330       // Additional Public Declarations
00331 
00332     protected:
00333         Table (FITSBase* p, HduType xtype, const String &hduName, int rows,     // ! Number of rows in table at creation, to be used to initialize NAXIS2
00334         const std::vector<String>& columnName, const std::vector<String>& columnFmt, const std::vector<String>& columnUnit = std::vector<String>(), int version = 1);
00335         //      To be called by reading operations.
00336         Table (FITSBase* p, HduType xtype, const String &hduName = String(""), int version = 1);
00337         //      ExtHDU constructor for getting ExtHDUs by number.
00338         //      Necessary since EXTNAME is a reserved not required
00339         //      keyword.
00340         Table (FITSBase* p, HduType xtype, int number);
00341 
00342         virtual std::ostream & put (std::ostream &s) const;
00343         void column (int columnNum, Column *value);
00344         void init (bool readFlag = false, const std::vector<String>& keys = std::vector<String>());
00345         virtual void setColumn (const String& colname, Column* value);
00346         void reindex ();
00347         void numCols (int value);
00348 
00349       // Additional Protected Declarations
00350 
00351     private:
00352         virtual void initRead ();
00353         virtual void readTableHeader (int ncols, std::vector<String>& colName, std::vector<String>& colFmt, std::vector<String>& colUnit) = 0;
00354         //      deep erasure , to be called by  assignment and dtors.
00355         void clearData ();
00356         void copyData (const Table& right);
00357 
00358       // Additional Private Declarations
00359 
00360     private: //## implementation
00361       // Data Members for Class Attributes
00362         int m_numCols;
00363 
00364       // Data Members for Associations
00365         std::map<string, Column*> m_column;
00366 
00367       // Additional Implementation Declarations
00368       friend class Column;
00369   };
00370 
00371   // Class CCfits::Table::NoSuchColumn 
00372 
00373   // Class CCfits::Table::InvalidColumnSpecification 
00374 
00375   // Class CCfits::Table 
00376 
00377   inline long Table::rows () const
00378   {
00379 
00380     return axis(1);
00381   }
00382 
00383   inline void Table::rows (long numRows)
00384   {
00385 
00386     naxes(1) = numRows;
00387   }
00388 
00389   inline int Table::numCols () const
00390   {
00391      return m_numCols;
00392   }
00393 
00394   inline const std::map<string, Column*>& Table::column () const
00395   {
00396     return m_column;
00397   }
00398 
00399   inline void Table::numCols (int value)
00400   {
00401     m_numCols = value;
00402   }
00403 
00404   inline std::map<string, Column*>& Table::column ()
00405   {
00406     return m_column;
00407   }
00408 
00409 } // namespace CCfits
00410 
00411 
00412 #endif
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/implementation.html0000644000225700000360000001277111667502524016416 0ustar cagordonlhea CCfits: Implementation Notes
Implementation Notes

This section comments on some of the design decisions for CCfits. We note the role of cfitsio in CCfits as the underlying "engine," the use of the C++ standard library. We also explain some of the choices made for standard library containers in the implementation - all of which is hidden from the user [as it should be].

Most importantly, the library wraps rather than replaces the use of cfitsio library; it does not perform direct disk I/O. The scheme is designed to retain the well-developed facilities of cfitsio (in particular, the extended file syntax), and make them available to C++ programmers in an OO framework. Some efficiency is lost over a 'pure' C++ FITS library, since the internal C implementation of many functions requires processing if blocks or switch statements that could be recoded in C++ using templates. However, we believe that the current version strikes a resonable compromise between developer time, utility and efficiency.

The implementation of CCfits uses the C++ Standard Library containers and algorithms [also referred to as the Standard Template Library, (STL)] and exception handling. Here is a summary of the rationale behind the implementation decisions made.

  • HDUs are contained within a FITS object using a std::multimap<string, HDU*> object.

    1. The map object constructs new array members on first reference
    2. Objects stored in the map are sorted on entry and retrieved efficiently using binary search techniques.
    3. The pointer-to-HDU implementation allows for polymorphism: one set of operations will process all HDU objects within the FITS file
    4. String objects (char* ) are represented by the std::string class, which has a rich public interface of search and manipulation facilities.

  • Scalar column data [one entry per cell] are implemented using std::vector<T> objects.

  • Vector column data [multiple and either fixed or variable numbers of entries per cell] are implemented using std::vector<std::valarray <T> > objects. The std::valarray template is intended for optimized numeric processing. valarrays are have the following desirable features:

    1. they are dynamic, but designed to be allocated in full on construction rather than dynamic resizing during operation: this is, what is usually needed in FITS files.
    2. They have built-in vectorized transcendental functions (e.g. std::valarray<T> sin(const std::valarray<T>& ).

    3. They provide std::valarray<T> apply(T f(const T&)) operation, to apply a function f to each element

    4. They provide slicing operations [see the "Getting Started" section for a simple example].

  • Exceptions are provided in for by a FitsException hierarchy, which prints out messages on errors and returns control to wherever the exception is caught. Non-zero status values returned by cfitsio are caught by subclass FitsError, which prints the string corresponding to an input status flag. FitsException's other subclasses are thrown on array bounds errors and other programming errors. Rare [we hope] errors that indicate programming flaws in the library throw FitsFatal errors that suggest that the user report the bug.
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/cookbook.html0000644000225700000360000002204511667502524015172 0ustar cagordonlhea CCfits: Getting Started
Getting Started

The program cookbook.cxx, analogous to the cookbook.c program supplied with cfitsio, was generated to test the correct functioning of the parts of the library and to provide a demonstration of its usage.

The code for cookbook is reproduced here with commentary as worked example of the usage of the library.

Driver Program

// The CCfits headers are expected to be installed in a subdirectory of
// the include path.

// The <CCfits> header file contains all that is necessary to use both the CCfits
// library and the cfitsio library (for example, it includes fitsio.h) thus making
// all of cfitsio's macro definitions available.

#ifdef HAVE_CONFIG_H
#include "config.h"
#endif

// this includes 12 of the CCfits headers and will support all CCfits operations.
// the installed location of the library headers is $(ROOT)/include/CCfits

// to use the library either add -I$(ROOT)/include/CCfits or #include <CCfits/CCfits>
// in the compilation target.

#include <CCfits>

#include <cmath>
    // The library is enclosed in a namespace.
        
    using namespace CCfits;




int main();
int writeImage();
int writeAscii();
int writeBinary();
int copyHDU();
int selectRows();
int readHeader(); 
int readImage();
int readTable();
int readExtendedSyntax();

int main()
{


     FITS::setVerboseMode(true);

     try
                     
     {

        if (!writeImage()) std::cerr << " writeImage() \n";
        if (!writeAscii()) std::cerr << " writeAscii() \n";
        if (!writeBinary()) std::cerr << " writeBinary()  \n";
        if (!copyHDU()) std::cerr << " copyHDU() \n";
        if (!readHeader()) std::cerr << " readHeader() \n";
        if (!readImage()) std::cerr << " readImage() \n";
        if (!readTable()) std::cerr << " readTable() \n";
        if (!readExtendedSyntax()) std::cerr << " readExtendedSyntax() \n";
        if (!selectRows()) std::cerr << " selectRows() \n";

     }
     catch (FitsException&) 
     // will catch all exceptions thrown by CCfits, including errors
     // found by cfitsio (status != 0)
     {
             
        std::cerr << " Fits Exception Thrown by test function \n";       
             
     }
    return 0;
}

The simple driver program illustrates the setting of verbose mode for the library, which makes all internal exceptions visible to the programmer. This is primarily for debugging purposes; exceptions are in some cases used to transfer control in common circumstances (e.g. testing whether a file should be created or appended to in write operations). Most of the exceptions will not produce a message unless this flag is set.

Nearly all of the exceptions thrown by CCfits are derived from FitsException, which is caught by reference in the above example. This includes all nonzero status codes returned by cfitsio by the following construct (recall that in the cfitsio library nearly all functions return a non-zero status code on error, and have a final argument status of type int):

 if ( [cfitsio call](args,...,&status)) throw FitsError(status);

FitsError, derived from FitsException, uses a cfitsio library call to convert the status code to a string message.

The few exceptions that are not derived from FitsException indicate fatal conditions implying bugs in the library. These print a message suggesting the user contact HEASARC to report the problem.

Note also the lack of statements for closing files in any of the following routines, The destructor (dtor) for the FITS object does this when it falls out of scope. A call

FITS::destroy() throw()

is provided for closing files explicitly; destroy() is also responsible for cleaning up the FITS object and deallocating its resources.

When the data are being read instead of written, the user is expected to copy the data into other program variables [rather than use references to the data contained in the FITS object].

The routines in this program test the following functionality:

writeImage() Writing Primary Images and Image Extensions

writeAscii() Creating and Writing to an Ascii Table Extension

writeBinary() Creating and Writing to a Binary Table Extension

copyHDU() Copying an Extension between Files

selectRows() Selecting Table Data

readHeader() Reading Header information from a HDU

readImage() Reading an Image

readTable() Reading a Table Extension

readExtendedSyntax() Reading with Extended File Name Syntax

Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/writeimage.html0000644000225700000360000002141211667502524015516 0ustar cagordonlhea CCfits: Writing Primary Images and Image Extensions
Writing Primary Images and Image Extensions

This section of the code demonstrates creation of images. Because every fits file must have a PHDU element, all the FITS constructors (ctors) instantiate a PHDU object. In the case of a new file, the default is to establish an empty HDU with BITPIX = 8 (BYTE_IMG). A current limitation of the code is that the data type of the PHDU cannot be replaced after the FITS file is created. Arguments to the FITS ctors allow the specification of the data type and the number of axes and their lengths. An image extension of type float is also written by calls in between the writes to the primary header demonstrating switch between HDUs during writes.

Note that in the example below data of type float is written to an image of type unsigned int, demonstrating both implicit type conversion and the cfitsio extension to unsigned data.

User keywords can be added to the PHDU after successful construction and these will both be accessible as container contents in the in-memory FITS object as well as being written to disk by cfitsio.

Images are represented by the standard library valarray template class which supports vectorized operations on numeric arrays (e.g. taking the square root of an array) and slicing techniques.

The code below also illustrates use of C++ standard library algorithms, and the facilities provided by the std::valarray class.

int writeImage()
{

    // Create a FITS primary array containing a 2-D image               
    // declare axis arrays.    
    long naxis    =   2;      
    long naxes[2] = { 300, 200 };   
    
    // declare auto-pointer to FITS at function scope. Ensures no resources
    // leaked if something fails in dynamic allocation.
    std::auto_ptr<FITS> pFits(0);
      
    try
    {                
        // overwrite existing file if the file already exists.
            
        const std::string fileName("!atestfil.fit");            
        
        // Create a new FITS object, specifying the data type and axes for the primary
        // image. Simultaneously create the corresponding file.
        
        // this image is unsigned short data, demonstrating the cfitsio extension
        // to the FITS standard.
        
        pFits.reset( new FITS(fileName , USHORT_IMG , naxis , naxes ) );
    }
    catch (FITS::CantCreate)
    {
          // ... or not, as the case may be.
          return -1;       
    }
    
    // references for clarity.
    
    long& vectorLength = naxes[0];
    long& numberOfRows = naxes[1];
    long nelements(1); 
    
    
    // Find the total size of the array. 
    // this is a little fancier than necessary ( It's only
    // calculating naxes[0]*naxes[1]) but it demonstrates  use of the 
    // C++ standard library accumulate algorithm.
    
    nelements = std::accumulate(&naxes[0],&naxes[naxis],1,std::multiplies<long>());
           
    // create a new image extension with a 300x300 array containing float data.
    
    std::vector<long> extAx(2,300);
    string newName ("NEW-EXTENSION");
    ExtHDU* imageExt = pFits->addImage(newName,FLOAT_IMG,extAx);
    
    // create a dummy row with a ramp. Create an array and copy the row to 
    // row-sized slices. [also demonstrates the use of valarray slices].   
    // also demonstrate implicit type conversion when writing to the image:
    // input array will be of type float.
    
    std::valarray<int> row(vectorLength);
    for (long j = 0; j < vectorLength; ++j) row[j] = j;
    std::valarray<int> array(nelements);
    for (int i = 0; i < numberOfRows; ++i)
    {
        array[std::slice(vectorLength*static_cast<int>(i),vectorLength,1)] = row + i;     
    }
    
    // create some data for the image extension.
    long extElements = std::accumulate(extAx.begin(),extAx.end(),1,std::multiplies<long>()); 
    std::valarray<float> ranData(extElements);
    const float PIBY (M_PI/150.);
    for ( int jj = 0 ; jj < extElements ; ++jj) 
    {
            float arg = PIBY*jj;
            ranData[jj] = std::cos(arg);
    }
 
    long  fpixel(1);
    
    // write the image extension data: also demonstrates switching between
    // HDUs.
    imageExt->write(fpixel,extElements,ranData);
    
    //add two keys to the primary header, one long, one complex.
    
    long exposure(1500);
    std::complex<float> omega(std::cos(2*M_PI/3.),std::sin(2*M_PI/3));
    pFits->pHDU().addKey("EXPOSURE", exposure,"Total Exposure Time"); 
    pFits->pHDU().addKey("OMEGA",omega," Complex cube root of 1 ");  

    
    // The function PHDU& FITS::pHDU() returns a reference to the object representing 
    // the primary HDU; PHDU::write( <args> ) is then used to write the data.
    
    pFits->pHDU().write(fpixel,nelements,array);
    
    
    // PHDU's friend ostream operator. Doesn't print the entire array, just the
    // required & user keywords, and is provided largely for testing purposes [see 
    // readImage() for an example of how to output the image array to a stream].
    
    std::cout << pFits->pHDU() << std::endl;

    return 0;
}
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/ascii.html0000644000225700000360000003264011667502524014456 0ustar cagordonlhea CCfits: Creating and Writing to an Ascii Table Extension
Creating and Writing to an Ascii Table Extension

In this section of the program we create a new Table extension of type AsciiTbl, and write three columns with 6 rows. Then we add another copy of the data two rows down (starting from row 3) thus overwriting values and creating new rows. We test the use of null values, and writing a date string. Implicit data conversion, as illustrated for images above, is supported. However, writing numeric data as character data, supported by cfitsio, is not supported by CCfits.

Note the basic pattern of CCfits operations: they are performed on an object of type FITS. Access to HDU extension is provided by FITS:: member functions that return references or pointers to objects representing HDUs. Extension are never created directly (all extension ctors are protected), but only through the functions FITS::addTable and FITS::addImage which add extensions to an existing FITS object, performing the necessary cfitsio calls.

The FITS::addTable function takes as one of its last arguments a HDU Type parameter, which needs to be AsciiTbl or BinTbl. The default is to create a BinTable (see next function).

Similarly, access to column data is provided through the functions ExtHDU::Column, which return references to columns specified by name or index number - see the documentation for the class ExtHDU for details.

addTable returns a pointer to Table, which is the abstract immediate superclass of the concrete classes AsciiTable and BinTable, whereas addImage returns a pointer to ExtHDU, which is the abstract base class of all FITS extensions. These base classes implement the public interface necessary to avoid the user of the library needing to downcast to a concrete type.

int writeAscii ()

    //******************************************************************
    // Create an ASCII Table extension containing 3 columns and 6 rows *
    //******************************************************************
{
    // declare auto-pointer to FITS at function scope. Ensures no resources
    // leaked if something fails in dynamic allocation.
    std::auto_ptr<FITS> pFits(0);
      
    try
    {                
    
            
        const std::string fileName("atestfil.fit");
        
        // append the new extension to file created in previous function call.   
        // CCfits writing constructor. 
        
        // if this had been a new file, then the following code would create
        // a dummy primary array with BITPIX=8 and NAXIS=0.

 
        pFits.reset( new FITS(fileName,Write) );
    }
    catch (CCfits::FITS::CantOpen)
    {
          // ... or not, as the case may be.
          return -1;       
    }
        
    unsigned long rows(6); 
    string hduName("PLANETS_ASCII");  
    std::vector<string> colName(3,"");
    std::vector<string> colForm(3,"");
    std::vector<string> colUnit(3,"");
    
    /* define the name, datatype, and physical units for the 3 columns */    
    colName[0] = "Planet";
    colName[1] = "Diameter";
    colName[2] = "Density";

    colForm[0] = "a8";
    colForm[1] = "i6";
    colForm[2] = "f4.2";

    colUnit[0] = "";
    colUnit[1] = "km";
    colUnit[2] = "g/cm^-3";    

    std::vector<string> planets(rows);
    
    const char *planet[] = {"Mercury", "Venus", "Earth", 
                            "Mars","Jupiter","Saturn"};
    const char *mnemoy[] = {"Many", "Volcanoes", "Erupt", 
                            "Mulberry","Jam","Sandwiches","Under",
                                "Normal","Pressure"};
                    
    long diameter[] = {  4880,    12112,      12742,   6800,    143000,   121000};
    float density[]  = { 5.1f,     5.3f,      5.52f,   3.94f,    1.33f,    0.69f};
    
    // append a new ASCII table to the fits file. Note that the user
    // cannot call the Ascii or Bin Table constructors directly as they
    // are protected.
    
    Table* newTable = pFits->addTable(hduName,rows,colName,colForm,colUnit,AsciiTbl);
        size_t j = 0;    
    for ( ; j < rows; ++j) planets[j] = string(planet[j]);    
    
    // Table::column(const std::string& name) returns a reference to a Column object
    
    try
    {                
    
        newTable->column(colName[0]).write(planets,1);  
        newTable->column(colName[1]).write(diameter,rows,1);
        newTable->column(colName[2]).write(density,rows,1);
    
    }
    catch (FitsException&)
    {
         // ExtHDU::column could in principle throw a NoSuchColumn exception,
         // or some other fits error may ensue.
         std::cerr << " Error in writing to columns - check e.g. that columns of specified name "
                        << " exist in the extension \n";
                               
    }
    
    //  FITSUtil::auto_array_ptr<T> is provided to counter resource leaks that
    //  may arise from C-arrays. It is a std::auto_ptr<T> analog that calls
    //  delete[] instead of delete.
    
    FITSUtil::auto_array_ptr<long>  pDiameter(new long[rows]);
    FITSUtil::auto_array_ptr<float>  pDensity(new float[rows]);
    long* Cdiameter = pDiameter.get();
    float*  Cdensity = pDensity.get();
    
    Cdiameter[0] = 4880; Cdiameter[1] = 12112; Cdiameter[2] = 12742; Cdiameter[3] = 6800;
    Cdiameter[4] = 143000; Cdiameter[5] = 121000;
    
    Cdensity[0] = 5.1f;  Cdensity[1] = 5.3f;  Cdensity[2] = 5.52f;
        Cdensity[3] = 3.94f; Cdensity[4] = 1.33f; Cdensity[5] = 0.69;
    
    // this << operator outputs everything that has been read.
    
    std::cout << *newTable << std::endl;
    
    pFits->pHDU().addKey("NEWVALUE",42," Test of adding keyword to different extension");
    
        pFits->pHDU().addKey("STRING",std::string(" Rope "),"trailing blank test 1 "); 
    
        pFits->pHDU().addKey("STRING2",std::string("Cord"),"trailing blank test 2 "); 
    // demonstrate increaing number of rows and null values.
    long ignoreVal(12112); 
    long nullNumber(-999);    
    try
    {      
        // add a TNULLn value to column 2. 
        newTable->column(colName[1]).addNullValue(nullNumber);    
        // test that writing new data properly expands the number of rows
        // in both the file]).write(planets,rows-3);  
        newTable->column(colName[2]).write(density,rows,rows-3);    
        // test the undefined value functionality. Undefineds are replaced on
        // disk but not in the memory copy.
        newTable->column(colName[1]).write(diameter,rows,rows-3,&ignoreVal);
    }
    catch (FitsException&) 
    { 
            // this time we're going to ignore problems in these operations 
            
    }

    // output header information to check that everything we did so far
    // hasn't corrupted the file.    
            
    std::cout << pFits->pHDU() << std::endl;
    
    
    std::vector<string> mnemon(9);
    for ( j = 0; j < 9; ++j) mnemon[j] = string(mnemoy[j]);
    
    // Add a new column of string type to the Table.
    // type,  columnName, width, units. [optional - decimals, column number]
    // decimals is only relevant for floatingpoint data in ascii columns.
    newTable->addColumn(Tstring,"Mnemonic",10," words ");
    newTable->column("Mnemonic").write(mnemon,1);  
    
    // write the data string.
    newTable->writeDate();
   
    // and see if it all worked right.
    std::cout << *newTable << std::endl;
    
    return 0;
}
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/binary.html0000644000225700000360000003313311667502524014650 0ustar cagordonlhea CCfits: Creating and Writing to a Binary Table Extension
Creating and Writing to a Binary Table Extension

The Binary Table interface is more complex because there is an additional parameter, the vector size of each `cell' in the table, the need to support variable width columns, and the desirability of supporting the input of data in various formats.

The interface supports writing to vector tables the following data structures: C-arrays (T*), std::vector<T> objects, std::valarray<T> objects, and std::vector<valarray<T> >. The last of these is the internal representation of the data.

The function below exercises the following functionality:

  • Create a BinTable extension
  • Write vector rows to the table
  • Insert table rows
  • Write complex data to both scalar and vector columns.
  • Insert Table columns
  • Delete Table rows
  • Write HISTORY and COMMENT cards to the Table
int writeBinary ()

    //*********************************************************************
    // Create a BINARY table extension and write and manipulate vector rows 
    //*********************************************************************
{
    std::auto_ptr<FITS> pFits(0);
      
    try
    {                
            
        const std::string fileName("atestfil.fit");        
        pFits.reset( new FITS(fileName,Write) );
    }
    catch (CCfits::FITS::CantOpen)
    {
          return -1;       
    }
    
        
    unsigned long rows(3);     
    string hduName("TABLE_BINARY");          
    std::vector<string> colName(7,"");
    std::vector<string> colForm(7,"");
    std::vector<string> colUnit(7,"");
    
    
    colName[0] = "numbers";
    colName[1] = "sequences";
    colName[2] = "powers";
    colName[3] = "big-integers";
    colName[4] = "dcomplex-roots";
    colName[5] = "fcomplex-roots";
    colName[6] = "scalar-complex";

    colForm[0] = "8A";
    colForm[1] = "20J";
    colForm[2] = "20D";
    colForm[3] = "20V";
    colForm[4] = "20M";
    colForm[5] = "20C";
    colForm[6] = "1M";

    colUnit[0] = "magnets";
    colUnit[1] = "bulbs";
    colUnit[2] = "batteries";  
    colUnit[3] = "mulberries";  
    colUnit[4] = "";  
    colUnit[5] = "";
    colUnit[6] = "pico boo";
    
    std::vector<string> numbers(rows);
    
    const string num("NUMBER-");
    for (size_t j = 0; j < rows; ++j)
    {
#ifdef HAVE_STRSTREAM
        std::ostrstream pStr;
#else
        std::ostringstream pStr;
#endif
        pStr << num << j+1;
        numbers[j] = string(pStr.str());
    }
                    
    const size_t OFFSET(20);
    
    // write operations take in data as valarray<T>, vector<T> , and 
    // vector<valarray<T> >, and T* C-arrays. Create arrays to exercise the C++
    // containers. Check complex I/O for both float and double complex types.
   
    std::valarray<long> sequence(60);
    std::vector<long> sequenceVector(60);
    std::vector<std::valarray<long> > sequenceVV(3);
    
    
    for (size_t j = 0; j < rows; ++j)
    {
        
        sequence[OFFSET*j] = 1 + j;
        sequence[OFFSET*j+1] = 1 + j;
        sequenceVector[OFFSET*j] = sequence[OFFSET*j];
        sequenceVector[OFFSET*j+1] = sequence[OFFSET*j+1];
        // generate Fibonacci numbers.
        for (size_t i = 2; i < OFFSET; ++i)
        {
                size_t elt (OFFSET*j +i);
                sequence[elt] = sequence[elt-1] + sequence[elt - 2];
                sequenceVector[elt] = sequence[elt] ;
        }
        sequenceVV[j].resize(OFFSET);
        sequenceVV[j] = sequence[std::slice(OFFSET*j,OFFSET,1)];
         
    }
    
        
    std::valarray<unsigned long> unsignedData(60);
    unsigned long base (1 << 31);
    std::valarray<double> powers(60);
    std::vector<double> powerVector(60);
    std::vector<std::valarray<double> > powerVV(3);
    std::valarray<std::complex<double> > croots(60);
    std::valarray<std::complex<float> > fcroots(60);
    std::vector<std::complex<float> > fcroots_vector(60);
    std::vector<std::valarray<std::complex<float> > > fcrootv(3);
    
    // create complex data as 60th roots of unity.
    double PIBY = M_PI/30.;
    
    for (size_t j = 0; j < rows; ++j)
    {
        for (size_t i = 0; i < OFFSET; ++i)
        {
                size_t elt (OFFSET*j+i);
                unsignedData[elt] = sequence[elt];
                croots[elt] = std::complex<double>(std::cos(PIBY*elt),std::sin(PIBY*elt));
                fcroots[elt] = std::complex<float>(croots[elt].real(),croots[elt].imag());
                double x = i+1;
                powers[elt] = pow(x,j+1);
                powerVector[elt] = powers[elt];
        }
        powerVV[j].resize(OFFSET);
        powerVV[j] = powers[std::slice(OFFSET*j,OFFSET,1)];
    }
    
    FITSUtil::fill(fcroots_vector,fcroots[std::slice(0,20,1)]);
    
    unsignedData += base;
    // syntax identical to Binary Table
    
    Table* newTable = pFits->addTable(hduName,rows,colName,colForm,colUnit);
    
    // numbers is a scalar column
    
    newTable->column(colName[0]).write(numbers,1);  
    
    // write valarrays to vector column: note signature change
    newTable->column(colName[1]).write(sequence,rows,1);
    newTable->column(colName[2]).write(powers,rows,1);
    newTable->column(colName[3]).write(unsignedData,rows,1);    
    newTable->column(colName[4]).write(croots,rows,1);    
    newTable->column(colName[5]).write(fcroots,rows,3);    
    newTable->column(colName[6]).write(fcroots_vector,1);    
    // write vectors to column: note signature change
    
    newTable->column(colName[1]).write(sequenceVector,rows,4);
    newTable->column(colName[2]).write(powerVector,rows,4);
    
    std::cout << *newTable << std::endl;
   
    for (size_t j = 0; j < 3 ;  ++j)
    {
            fcrootv[j].resize(20);
            fcrootv[j] = fcroots[std::slice(20*j,20,1)];
    } 

    // write vector<valarray> object to column.
    
    newTable->column(colName[1]).writeArrays(sequenceVV,7);
    newTable->column(colName[2]).writeArrays(powerVV,7);

 
    
    // create a new vector column in the Table


    newTable->addColumn(Tfloat,"powerSeq",20,"none");

    // add data entries to it.

    newTable->column("powerSeq").writeArrays(powerVV,1);
    newTable->column("powerSeq").write(powerVector,rows,4);
    newTable->column("dcomplex-roots").write(croots,rows,4);
    newTable->column("powerSeq").write(sequenceVector,rows,7);
    

    std::cout << *newTable << std::endl;
    
    // delete one of the original columns.

 

    newTable->deleteColumn(colName[2]);


    // add a new set of rows starting after row 3. So we'll have 14 with
    // rows 4,5,6,7,8 blank

    newTable->insertRows(3,5);
    
    // now, in the new column, write 3 rows (sequenceVV.size() = 3). This
    // will place data in rows 3,4,5 of this column,overwriting them.
    
    newTable->column("powerSeq").writeArrays(sequenceVV,3);
    newTable->column("fcomplex-roots").writeArrays(fcrootv,3);

    // delete 3 rows starting with row 2. A Table:: method, so the same
    // code is called for all Table objects. We should now have 11 rows.
    
    newTable->deleteRows(2,3);
    
    //add a history string. This function call is in HDU:: so is identical
    //for all HDUs

    string hist("This file was created for testing CCfits write functionality");
    hist += " it serves no other useful purpose. This particular part of the file was ";
    hist += " constructed to test the writeHistory() and writeComment() functionality" ;

 
    newTable->writeHistory(hist);
    
    // add a comment string. Use std::string method to change the text in the message
    // and write the previous junk as a comment.

    hist.insert(0, " COMMENT TEST ");

    newTable->writeComment(hist);

    // ... print the result.
    
    std::cout << *newTable << std::endl;
    
    return 0;
}
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/copy.html0000644000225700000360000001061511667502524014336 0ustar cagordonlhea CCfits: Copying an Extension between Files
Copying an Extension between Files

Copying extensions from one fits file to another is very straightforward. A complication arises, however, because CCfits requires every FITS object to correspond to a conforming FITS file once constructed. Thus we provide a custom constructor which copies the primary HDU of a ``source" FITS file into a new file. Subsequent extensions can be copied by name or extension number as illustrated below.

Note that the simple call

FITS::FITS(const std::string& filename)

Reads the headers for all of the extensions in the file, so that after the FITS object corresponding to infile in the following code is instantiated, all extensions are recognized [read calls are also provided to read only specific HDUs - see below].

In the example code below, the file outFile is written straight to disk. Since the code never requests that the HDUs being written to that file are read, the user needs to add statements to do this after the copy is complete.

int copyHDU()
{
    //******************************************************************
    // copy the 1st and 3rd HDUs from the input file to a new FITS file 
    //******************************************************************


    const string inFileName("atestfil.fit");  
    const string outFileName("btestfil.fit");  

    int status(0);

    status = 0;

    remove(outFileName.c_str());       // Delete old file if it already exists

    // open the existing FITS file
    FITS inFile(inFileName);
    
    // custom constructor FITS::FITS(const string&, const FITS&) for
    // this particular task.
    
    FITS outFile(outFileName,inFile);

    // copy extension by number...
    outFile.copy(inFile.extension(2));
    
    // copy extension by name...
    outFile.copy(inFile.extension("TABLE_BINARY"));
    
   return 0;

 }
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/filter.html0000644000225700000360000001262711667502524014656 0ustar cagordonlhea CCfits: Selecting Table Data
Selecting Table Data

This function demonstrates the operation of filtering a table by selecting rows that satisfy a condition and writing them to a new file, or overwriting a table with the filtered data. A third mode, where a filtered dataset is appended to the file containing the source data, will be available shortly, but is currently not supported by cfitsio.

The expression syntax for the conditions that may be applied to table data are described in the cfitsio manual. In the example below, we illustrate filtering with a boolean expression involving one of the columns.

The two flags at the end of the call to FITS::filter are an `overwrite' flag - which only has meaning if the inFile and outFile are the same, and a 'read' flag. overwrite defaults to true. The second flag is a 'read' flag which defaults to false. When set true the user has immediate access to the filtered data.

(Also see the section "Reading with Extended File Name Syntax")

int selectRows()
 {
         const string inFile("atestfil.fit");
         const string outFile("btestfil.fit");
         const string newFile("ctestfil.fit");
         remove(newFile.c_str());
       
         // test 1: write to a new file
         std::auto_ptr<FITS> pInfile(new FITS(inFile,Write,string("PLANETS_ASCII")));
         FITS* infile(pInfile.get());
         std::auto_ptr<FITS> pNewfile(new FITS(newFile,Write));
         ExtHDU& source = infile->extension("PLANETS_ASCII");
         const string expression("DENSITY > 3.0");
         
         
         Table& sink1 = pNewfile->filter(expression,source,false,true);

                
         std::cout << sink1 << std::endl;
         
         // test 2: write a new HDU to the current file, overwrite false, read true.
         // AS OF 7/2/01 does not work because of a bug in cfitsio, but does not
         // crash, simply writes a new header to the file without also writing the
         // selected data.
         Table& sink2 = infile->filter(expression,source,false,true);
         
         std::cout << sink2 << std::endl;
         
         // reset the source file back to the extension in question.
         source = infile->extension("PLANETS_ASCII");
          
         // test 3: overwrite the current HDU with filtered data.
                    
         Table& sink3 = infile->filter(expression,source,true,true);
         
         std::cout << sink3 << std::endl;
          
        
         return 0;       
 }
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/readhead.html0000644000225700000360000000631511667502524015123 0ustar cagordonlhea CCfits: Reading Header information from a HDU
Reading Header information from a HDU

This function demonstrates selecting one HDU from the file, reading the header information and printing out the keys that have been read and the descriptions of the columns.

The readData flag is by default false (see below for the alternative case), which means that the data in the column is not read.

int readHeader()
 {

         
         const string SPECTRUM("SPECTRUM");
         
         // read a particular HDU within the file. This call reads just the header 
         // information from SPECTRUM
         
         std::auto_ptr<FITS> pInfile(new FITS("file1.pha",Read,SPECTRUM));
         
         // define a reference for clarity. (std::auto_ptr<T>::get returns a pointer
         
         ExtHDU& table = pInfile->extension(SPECTRUM);
         
         // read all the keywords, excluding those associated with columns.
         
         table.readAllKeys();
         
         // print the result.
         
         
         std::cout << table << std::endl;
         
         
        return 0;       
 }
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/readimage.html0000644000225700000360000000732011667502524015301 0ustar cagordonlhea CCfits: Reading an Image
Reading an Image

Image reading calls are made very simple: the FITS object is created with the readDataFlag set to true, and reading is done on construction. The following call

image.read(contents)

calls

PHDU::read(std::valarray<S>& image).

This copies the entire image from the FITS object into the std::valarray object contents, sizing it as necessary. PHDU::read() and ExtHDU::read() [for image extensions] take a range of arguments that support (a) reading the entire image - as in this example; (b) sections of an image starting from a given pixel; (c) rectangular subsets. See the class references for PHDU and ExtHDU for details.

 int readImage()
 {
        std::auto_ptr<FITS> pInfile(new FITS("atestfil.fit",Read,true));
        
        PHDU& image = pInfile->pHDU(); 
        
        std::valarray<unsigned long>  contents;
        
        // read all user-specifed, coordinate, and checksum keys in the image
        image.readAllKeys();
        
        image.read(contents);
        
        // this doesn't print the data, just header info.
        std::cout << image << std::endl;
        
        long ax1(image.axis(0));
        long ax2(image.axis(1));
        
        for (long j = 0; j < ax2; j+=10)
        {
                std::ostream_iterator<short> c(std::cout,"\t");
                std::copy(&contents[j*ax1],&contents[(j+1)*ax1-1],c);
                std::cout << '\n';       
        }
           
        std::cout << std::endl;
        return 0;   
 }
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/readtable.html0000644000225700000360000001050211667502524015302 0ustar cagordonlhea CCfits: Reading a Table Extension
Reading a Table Extension

Reading table data is similarly straightforward (unsurprisingly, because this application is exactly what CCfits was designed to do easily in the first place).

The two extensions are read on construction, including all the column data [readDataFlag == true] and then printed.

Note that if the data are read as part of the construction, then CCfits uses the row-optimization techniques describe in chapter 13 of the cfitsio manual; a chunk of data equal to the size of the available buffer space is read from contiguous disk blocks and transferred to memory storage, as opposed to each column being read in turn. Thus the most efficient way of reading files is to acquire the data on construction. 

 int readTable()
 {
        // read a table and explicitly read selected columns. To read instead all the
        // data on construction, set the last argument of the FITS constructor
        // call to 'true'. This functionality was tested in the last release.
        std::vector<string> hdus(2);
        hdus[0] = "PLANETS_ASCII";
        hdus[1] = "TABLE_BINARY";
        
        
        std::auto_ptr<FITS> pInfile(new FITS("atestfil.fit",Read,hdus,false));
        
        ExtHDU& table = pInfile->extension(hdus[1]);
        
        
        
        std::vector < valarray <int > > pp;
        table.column("powerSeq").readArrays( pp, 1,3 );
                        
        std::vector < valarray <std::complex<double> > > cc;
        table.column("dcomplex-roots").readArrays( cc, 1,3 );
        
        std::valarray < std::complex<float> > ff;
        table.column("fcomplex-roots").read( ff, 4 );
        
        std::cout << pInfile->extension(hdus[0]) << std::endl;
        
        std::cout << pInfile->extension(hdus[1]) << std::endl;
         
        return 0;       
 }
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/readextendedsyntax.html0000644000225700000360000001176711667502524017300 0ustar cagordonlhea CCfits: Reading with Extended File Name Syntax
Reading with Extended File Name Syntax

It is also possible to apply extended file name syntax (as described in chapter 10 of the cfitsio manual) when reading data. The function below shows a typical example using the basic CCfits::FITS constructor.

The extended syntax is entered as part of the file name string. In this case it specifies an HDU and a row selection criterion dependent upon the values in the column named "Density." Any read operations performed on this HDU will only see rows which meet the "Density > 5.2" condition. Also the current header position in the file is automatically placed at the specified HDU upon construction of the FITS object.

Extended file name syntax can also be used with the FITS constructors which take specific HDU names or indices as arguments. However if the extended syntax specifies an HDU, that HDU must also be among those specified as a FITS constructor argument, otherwise a CCfits::FITS::OperationNotSupported exception is thrown. For example: 

FITS fits(new FITS("myFile.fit[HDU_A]",Read,string("HDU_A"))); // OK
FITS fits(new FITS("myFile.fit[HDU_B]",Read,string("HDU_A"))); // Error

(Note - The extended file name feature which allows the opening of a particular image located in the row of a table remains unsupported in CCfits.)

 int readExtendedSyntax()
 {
    // Current extension will be set to PLANETS_ASCII after construction:
    std::auto_ptr<FITS> pInfile(new FITS("btestfil.fit[PLANETS_ASCII][Density > 5.2]"));
    std::cout << "\nCurrent extension: " 
        << pInfile->currentExtensionName() << std::endl;
        
    Column& col = pInfile->currentExtension().column("Density");
    std::vector<double> densities;
    
    // nRows should only include rows with density column vals > 5.2.
    const int nRows = col.rows();
    col.read(densities, 1, nRows);
    for (int i=0; i<nRows; ++i)
       std::cout << densities[i] << "  ";
    std::cout << std::endl;
    
    return 0;
 }
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/releases.html0000644000225700000360000002031211667502524015162 0ustar cagordonlhea CCfits: Previous Release Notes
Previous Release Notes

Changes for CCfits 2.1 release Nov 2008

  • Modified several FITS constructors and FITS::open function to allow proper handling of CFITSIO extended filename syntax.
  • Extended filename syntax example added to cookbook.
  • Fix made to FITS::read function for case of missing EXTVER keyword when searching for HDU with extver > 1.
  • Removed inclusion of the internal-only CFITSIO fitsio2.h file from Column.cxx. LONGLONG limits definitions are now found in fitsio.h.

Changes for CCfits 2.0 release Feb 2008 Enhancements to CCfits:

  • Checksum Capability: 4 checksum related functions have been added to the HDU class, which now allows users to set and verify checksums directly from inside CCfits.
  • Capturing Error Messages: The FitsException base class now stores its output error message, and it can be retrieved from any of the exception subclass objects with a call to the new FitsException::message() function.
  • Improved Keyword Handling: New functions copyAllKeys, keywordCategories, and a second addKey function have been added to the HDU class. The Keyword class now offers a public setValue function to modify an existing keyword. Also the class member documentation for keyword related functions has been upgraded and expanded.
  • Image Scaling: In the HDU class (for instances of its PHDU and image ExtHDU subclasses), scale and zero set functions can now write BSCALE and BZERO keywords to the file. A new suppressScaling function has been added to temporarily turn off scaling. The ImageExt<T> class has also been added to the documentation.
  • Miscellaneous New Functions:Table::getRowsize() (submitted by Patrik Jonsson), Fits::fitsPointer(), Column::parent().

Bug Fixes:

  • FITS constructor in Write mode caused a segmentation fault when used on read-only files. (Reported by Gerard Zins)
  • Column write functions were not turning off NULL checking even when the nulval pointer was set to 0. (Reported by Gerard Zins)
  • For the FITS constructor which takes an existing FITS object as an argument, when given the filename of an existing file (and without the '!' specifier), it places a new primary HDU in the first extension. It shouldn't allow a write operation at all in this case. (Reported by Andy Beardmore)
  • Some additional #include statements are needed for compilation on a test version of g++4.3 (Reported by Aurelien Jarno)

Backwards Compatibility Issues:

  • The following documented public access member functions have now been removed or made protected/private. As these functions were either never fully implemented or could not successfully be used from external code, it is hoped that these removals will not break any pre-existing code: FITS::clone, HDU::setKeyWord, the HDU::bitpix set function, the Keyword class constructors.

Changes for CCfits 1.8 release 10/07.

  • Fixes made to bugs in Column write and writeArrays functions which were preventing the writing of variable-width columns. Also now allows writing to fixed-width columns with arrays that are shorter than the fixed width.
  • The HDU::readAllKeys() function will no longer throw if it is unable to read a particular keyword. Instead it will skip it and move to the next keyword. This was done primarily to prevent it from tripping on undefined keywords.

Changes for CCfits 1.7 release 6/07. Fixes for the following bugs:

  • The FITS::copy function merely wrote the copied HDU to the file, but did not allow it to be accessed for further modifications within CCfits.
  • When reading compressed images, CCfits should use the ZBITPIX and ZNAXIS keywords rather than BITPIX and NAXIS. (Fix is based on a patch submitted by Patrik Jonsson.)
  • The BSCALE keyword was being ignored if the BZERO keyword didn't also exist.
  • Cases of out-of-scope usage of std::string's c_str() pointers, could potentially cause crash. (Fix submitted by Jeremy Sanders.)

Changes for CCfits 1.6 release 11/06

  • Added capbility to write compressed images, including 6 new wrapper public functions in FITS class.
  • In FITS::addImage, corrected the logic which checks for a pre-existing image extension with the same version number.
  • CFITSIO 3.02 renamed fitsfile struct member rice_nbits to noise_nbits. Made corresponding change in copyFitsPtr function in FITSUtil.cxx. As it stands, this makes this version of CCfits incompatible with earlier versions of CFITSIO
  • In FITS.h definition, removed both friend declarations of HDUCreator Make functions. It seems neither function needs to be a friend, and one of them is actually private. Some compilers don't allow this (report came from MS VisualC++ user).
  • Bug fix in Make function of HDUCreator.cxx. When creating a new ImageExt (and not the primary), it was only passing the version number along for float and double types. This causes problems when there is more than 1 image extension with the same name, and it needs the version number to distinguish them.
  • A couple of bug fixes to the first/last/stride version of PHDU read image subset. It was not passing the proper parameters to fits_read_subset, and was not always correctly resizing the internal m_image array.
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/installation.html0000644000225700000360000001752011667507214016070 0ustar cagordonlhea CCfits: Installing the Package
Installing the Package

Platforms

CCfits is generally supported on the same platforms as HEASOFT, and on Windows with VC++ 7.0 or later. See the HEASOFT supported platforms page.

Building

To build and install CCfits from source code on a UNIX-like (e.g. UNIX, Linux, or Cygwin) platform, take the following steps. For building on a Microsoft Windows platform with Visual Developer Studio, see below.

Instructions for Building CCfits on UNIX-like platforms:

1. Configure

By default, the GCC compiler and linker will be used. If you want to compile and link with a different compiler and linker, you can set some environment variable before running the configure script. For example, to use Sun's C++ compiler, do the following:

> setenv CXX CC (csh syntax)

or

> export CXX=CC (bash syntax)

You can set the absolute path to the compiler you want to use if necessary.

CCfits requires that the CFITSIO package, version 3.08 or later, is available on your system. See

http://heasarc.gsfc.nasa.gov/docs/software/fitsio/fitsio.html

for more information. The configure script that you will run takes an option to specify the location of the CFITSIO package.

If the CFITSIO package is installed in a directory consisting of a 'lib' subdirectory containing "libcfitsio.a" or "libcfitsio.so" and an 'include' subdirectory containing "fitsio.h", then you can run the configure script with a single option. For example, if the cfitsio package is installed in this fashion in /usr/local/cfitsio/ then the configure script option will be

--with-cfitsio=/usr/local/cfitsio

If the CFITSIO package is not installed in the above manner, then you need to run the configure script with two options, one to specify the include directory and the other to specify the library directory. For example, if the cfitsio package was built in /home/user/cfitsio/ then the two options will be

--with-cfitsio-include=/home/user/cfitsio --with-cfitsio-libdir=/home/user/cfitsio

For users of HEASOFT (instead of stand-alone CFITSIO): Note that modern distributions of HEASOFT only include a "libcfitsio_X.XX.so" library by default, but the configure script needs to find "libcfitsio.so", so you will need to create a symbolic link in $HEADAS/lib/ linking libcfitsio.so -> libcfitsio_X.XX.so in order for CCfits to configure properly. You can then configure CCfits using "--with-cfitsio=$HEADAS/lib".

You have the option of carrying out the build in a separate directory from the source directory or in the same directory as the source. In either case, you need to run the configure script in the directory where the build will occur. For example, if building in the source directory with the cfitsio directory in /usr/local/cfitsio/ then the configure command should be issued like this:

> ./configure --with-cfitsio=/usr/local/cfitsio

If you do the build in a separate directory from the source, you may need to issue the configure command something like this:

> ../CCfits/configure --with-cfitsio=/usr/local/cfitsio

The configure script will create the Makefile with the path to the compiler you choose (or GCC by default), and the path to the CFITSIO package. The configure script has other options, such as the install location. To see these options type

> ./configure --help

2. Build

Building the C++ shared library and Java classes will be done automatically by running make without arguments like this:

> gmake

3. Install

To install, type:

> make install

The default install location will be /usr/local/lib for the library and /usr/local/include for the header files. You can change this with the --prefix option when you configure, or with something like...

> make DESTDIR=/usr/local/CCfits install

Instructions for Microsft Windows build:

Compiling CCfits with MS VC++ requires VC++ 7.0 or later. This is the compiler that comes with Visual Studio.NET. Earlier versions of the compiler has too many defects in the area of instanciating templates.

Take the following steps.

1. Compile the C++ code. Open the vs.net/CCfits/CCfits.sln file with Visual Studio.NET. The includes paths have been set to find the cfitsio build directory at the same level as the CCfits directory. If this is not the case, use Visual Studio.NET to edit the include paths and extra library paths to where you have cfitsio installed.

Next, just use the build icon or the build menu item.

To build the test program, cookbook, use the vs.net/cookbook.cookbook.sln file

Author: Paul_Kunz@slac.stanford.edu Revised 1 Nov 2006 by Bryan Irby

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CCfits/html/missing.html0000644000225700000360000001521611667502524015037 0ustar cagordonlhea CCfits: What's Present, What's Missing, and Calling CFITSIO
What's Present, What's Missing, and Calling CFITSIO

Most of the functionality of cfitsio described in Chapter 5 of the cfitsio manual is present, although CCfits is designed to provide atomic read/write operations rather than primitive file manipulation. For example, opening and creating FITS files are private operations which are called by reading and writing constructors. Similarly, errors are treated by C++ exception handling rather than returning status codes, and moving between HDUs within a file is a primitive rather than an atomic operation [in CCfits, operations typically call an internal HDU::makeThisCurrent() call on a specific table or image extension, and then perform the requested read/write operation].

Read/Write operations for keys (in the HDU class) are provided; these implement calls to fits_read_key and fits_update_key respectively. In the case of keywords, which have one of five data types (Integer, Logical, String, Floating and Complex) CCfits will handle certain type conversions between the keyword value and the data type of the user-supplied variable. This is described in detail in the Keyword class reference page. In reading image and table data, intrinsic type conversions are performed as in cfitsio with the exception that reading numeric data into character data is not supported. There is an extensive set of member functions supporting equivalents of most of cfitsio's read/write operations: the classes PHDU [primary HDU] and ExtHDU [with subclasses template <typename T> ImageExt<T>], provide multiple overloaded versions of read and write functions. The Column class, instances of which can be held in Table instances [with subclasses AsciiTable and BinTable] has also an extensive set of read/write operations.

A special constructor is provided which creates a new file with the Primary HDU of a source file. A FITS::copy(const HDU&) function copies HDUs from one file into another. Support for filtering table rows by expression is provided by a FITS::filter( ... ) call which may be used to create a new filtered file or overwrite an existing HDU (see cfitsio manual section 5.6.4).

Functions are provided for adding and deleting columns, and inserting and deleting rows in tables.

HDU objects also have functions to implement writing of history, comment and date keys.

Extended file name syntax (chapter 10 of the cfitsio manual) is supported in general, though not the feature which allows the opening of a particular image stored in the row of a table.

What's Not Present

The coordinate library manipulations [cfitsio manual chapter 7] are not supported.

The iterator work functions [cfitsio manual chapter 6] are not supported. Many of the functions provided are easier to implement using the properties of the standard library, since the standard library containers either allow vectorized operations (in the case of valarrays) or standard library algorithms that take iterators or pointers. In some ways the fits_iterate_data function provide an alternative, approach to the same need for encapsulation addressed by CCfits.

The hierarchical grouping routines are not supported.

Explicit opening of in-memory data sets as described in Chapter 9 of the manual is not supported since none of the FITS constructors call the appropriate cfitsio primitives.

Calling CFITSIO

To gain any functionality currently missing in CCfits, it is possible of course to call the underlying CFITSIO library functions directly. The CCfits FITS and HDU classes both have the public member function fitsPointer(), which returns the fitsfile pointer required in CFITSIO function calls. One should use caution when doing this however, since any I/O changes made this way will NOT be mirrored in the CCfits FITS object (nor its component objects) associated with the file. Therefore once a FITS object has been bypassed this way, it is safest to just not use that object again, and instead continue calling CFITSIO directly or instantiate a new FITS object that will pick up the current file state.

Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/todo.html0000644000225700000360000000660411667502524014334 0ustar cagordonlhea CCfits: Todo List
Todo List
Member CCfits::AsciiTable::AsciiTable (FITSBase *p, const String &hduName, int rows, const std::vector< String > &columnName=std::vector< String >(), const std::vector< String > &columnFmt=std::vector< String >(), const std::vector< String > &columnUnit=std::vector< String >(), int version=1)
{enforce equal dimensions for arrays input to AsciiTable, BinTable writing ctor}
Member CCfits::FITS::addImage (const String &hduName, int bpix, std::vector< long > &naxes, int version=1)
Add a function for replacing the primary image
Member CCfits::FITS::addTable (const String &hduName, int rows, const std::vector< String > &columnName=std::vector< String >(), const std::vector< String > &columnFmt=std::vector< String >(), const std::vector< String > &columnUnit=std::vector< String >(), HduType type=BinaryTbl, int version=1)
the code should one day check that the version keyword is higher than any other versions already added to the FITS object (although cfitsio doesn't do this either).
Class CCfits::PHDU
Implement functions that allow replacement of the primary image
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CCfits/html/group__FITSexcept.html0000644000225700000360000002203211667502524016711 0ustar cagordonlhea CCfits: FITS Exceptions
Classes
FITS Exceptions

Classes

class  CCfits::Column::RangeError
 exception to be thrown for inputs that cause range errors in column read operations. More...
class  CCfits::ExtHDU::WrongExtensionType
 Exception to be thrown on unmatched extension types. More...
class  CCfits::FITS::CantCreate
 thrown on failure to create new file More...
class  CCfits::FITS::CantOpen
 thrown on failure to open existing file More...
class  CCfits::FITS::NoSuchHDU
 exception thrown by HDU retrieval methods. More...
class  CCfits::FITS::OperationNotSupported
 thrown for unsupported operations, such as attempted to select rows from an image extension. More...
class  CCfits::FitsError
 FitsError is the exception thrown by non-zero cfitsio status codes. More...
class  CCfits::FitsException
 FitsException is the base class for all exceptions thrown by this library. More...
class  CCfits::FitsFatal
 [potential] base class for exceptions to be thrown on internal library error. More...
class  CCfits::FITSUtil::UnrecognizedType
 exception thrown by MatchType if it encounters data type incompatible with cfitsio. More...
class  CCfits::HDU::InvalidExtensionType
 exception to be thrown if user requests extension type that can not be understood as ImageExt, AsciiTable or BinTable. More...
class  CCfits::HDU::InvalidImageDataType
 exception to be thrown if user requests creation of an image of type not supported by cfitsio. More...
class  CCfits::HDU::NoNullValue
 exception to be thrown on seek errors for keywords. More...
class  CCfits::HDU::NoSuchKeyword
 exception to be thrown on seek errors for keywords. More...
class  CCfits::Table::NoSuchColumn
 Exception to be thrown on a failure to retrieve a column specified either by name or index number. More...
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CCfits/html/modules.html0000644000225700000360000000341511667502524015034 0ustar cagordonlhea CCfits: Modules
Modules
Here is a list of all modules:
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CCfits/html/annotated.html0000644000225700000360000003333611667502524015346 0ustar cagordonlhea CCfits: Class List
Class List
Here are the classes, structs, unions and interfaces with brief descriptions:
CCfits::AsciiTableClass Representing Ascii Table Extensions
CCfits::BinTableClass Representing Binary Table Extensions. Contains columns with scalar or vector row entries
CCfits::ColumnAbstract base class for Column objects
CCfits::Column::InsufficientElementsException thrown if the data supplied for a write operation is less than declared
CCfits::Column::InvalidDataTypeException thrown for invalid data type inputs
CCfits::Column::InvalidNumberOfRowsException thrown if user enters a non-positive number for the number of rows to write
CCfits::Column::InvalidRowNumberException thrown on attempting to read a row number beyond the end of a table
CCfits::Column::InvalidRowParameterException thrown on incorrect row writing request
CCfits::Column::NoNullValueException thrown if a null value is specified without support from existing column header
CCfits::Column::RangeErrorException to be thrown for inputs that cause range errors in column read operations
CCfits::Column::WrongColumnTypeException thrown on attempting to access a scalar column as vector data
CCfits::ExtHDUBase class for all FITS extension HDUs, i.e. Image Extensions and Tables
CCfits::ExtHDU::WrongExtensionTypeException to be thrown on unmatched extension types
CCfits::FITSMemory object representation of a disk FITS file
CCfits::FITS::CantCreateThrown on failure to create new file
CCfits::FITS::CantOpenThrown on failure to open existing file
CCfits::FITS::NoSuchHDUException thrown by HDU retrieval methods
CCfits::FITS::OperationNotSupportedThrown for unsupported operations, such as attempted to select rows from an image extension
CCfits::FitsErrorFitsError is the exception thrown by non-zero cfitsio status codes
CCfits::FitsExceptionFitsException is the base class for all exceptions thrown by this library
CCfits::FitsFatal[potential] base class for exceptions to be thrown on internal library error
CCfits::FITSUtil::auto_array_ptr< X >A class that mimics the std:: library auto_ptr class, but works with arrays
CCfits::FITSUtil::CAarray< T >Function object returning C array from a valarray. see CVarray for details
CCfits::FITSUtil::CVAarray< T >Function object returning C array from a vector of valarrays. see CVarray for details
CCfits::FITSUtil::CVarray< T >Function object class for returning C arrays from standard library objects used in the FITS library implementation
CCfits::FITSUtil::MatchName< T >Predicate for classes that have a name attribute; match input string with instance name
CCfits::FITSUtil::MatchNum< T >Predicate for classes that have an index attribute; match input index with instance value
CCfits::FITSUtil::MatchPtrName< T >As for MatchName, only with the input class a pointer
CCfits::FITSUtil::MatchPtrNum< T >As for MatchNum, only with the input class a pointer
CCfits::FITSUtil::MatchType< T >Function object that returns the FITS ValueType corresponding to an input intrinsic type
CCfits::FITSUtil::UnrecognizedTypeException thrown by MatchType if it encounters data type incompatible with cfitsio
CCfits::HDUBase class for all HDU [Header-Data Unit] objects
CCfits::HDU::InvalidExtensionTypeException to be thrown if user requests extension type that can not be understood as ImageExt, AsciiTable or BinTable
CCfits::HDU::InvalidImageDataTypeException to be thrown if user requests creation of an image of type not supported by cfitsio
CCfits::HDU::NoNullValueException to be thrown on seek errors for keywords
CCfits::HDU::NoSuchKeywordException to be thrown on seek errors for keywords
CCfits::ImageExt< T >
CCfits::KeywordAbstract base class defining the interface for Keyword objects
CCfits::PHDUClass representing the primary HDU for a FITS file
CCfits::Table
CCfits::Table::NoSuchColumnException to be thrown on a failure to retrieve a column specified either by name or index number
Generated on Tue Dec 6 2011 16:12:52 for CCfits by   doxygen 1.7.5.1
CCfits/html/classes.html0000644000225700000360000003277211667502524015031 0ustar cagordonlhea CCfits: Class Index
Class Index
A | B | C | E | F | H | I | K | M | N | O | P | R | T | U | W
  A  
  E  
Column::InsufficientElements (CCfits)   MatchPtrNum (CCfits::FITSUtil)   
  R  
Column::InvalidDataType (CCfits)   MatchType (CCfits::FITSUtil)   
AsciiTable (CCfits)   ExtHDU (CCfits)   HDU::InvalidExtensionType (CCfits)   
  N  
Column::RangeError (CCfits)   
auto_array_ptr (CCfits::FITSUtil)   
  F  
HDU::InvalidImageDataType (CCfits)   
  T  
  B  
Column::InvalidNumberOfRows (CCfits)   HDU::NoNullValue (CCfits)   
FITS (CCfits)   Column::InvalidRowNumber (CCfits)   Column::NoNullValue (CCfits)   Table (CCfits)   
BinTable (CCfits)   FitsError (CCfits)   Column::InvalidRowParameter (CCfits)   Table::NoSuchColumn (CCfits)   
  U  
  C  
FitsException (CCfits)   
  K  
FITS::NoSuchHDU (CCfits)   
FitsFatal (CCfits)   HDU::NoSuchKeyword (CCfits)   UnrecognizedType (CCfits::FITSUtil)   
CAarray (CCfits::FITSUtil)   
  H  
Keyword (CCfits)   
  O  
  W  
FITS::CantCreate (CCfits)   
  M  
FITS::CantOpen (CCfits)   HDU (CCfits)   FITS::OperationNotSupported (CCfits)   Column::WrongColumnType (CCfits)   
Column (CCfits)   
  I  
MatchName (CCfits::FITSUtil)   
  P  
ExtHDU::WrongExtensionType (CCfits)   
CVAarray (CCfits::FITSUtil)   MatchNum (CCfits::FITSUtil)   
CVarray (CCfits::FITSUtil)   ImageExt (CCfits)   MatchPtrName (CCfits::FITSUtil)   PHDU (CCfits)   
A | B | C | E | F | H | I | K | M | N | O | P | R | T | U | W
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CCfits/html/hierarchy.html0000644000225700000360000001437711667502524015353 0ustar cagordonlhea CCfits: Class Hierarchy
Class Hierarchy
This inheritance list is sorted roughly, but not completely, alphabetically:
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CCfits/html/functions.html0000644000225700000360000001260011667502524015370 0ustar cagordonlhea CCfits: Class Members
Here is a list of all documented class members with links to the class documentation for each member:

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CCfits/html/functions_0x64.html0000644000225700000360000001175011667502524016156 0ustar cagordonlhea CCfits: Class Members
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Here is a list of all documented class members with links to the class documentation for each member:

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Here is a list of all documented class members with links to the class documentation for each member:

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Here is a list of all documented class members with links to the class documentation for each member:

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CCfits/html/functions_0x68.html0000644000225700000360000001041411667502524016156 0ustar cagordonlhea CCfits: Class Members
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CCfits/html/functions_0x69.html0000644000225700000360000001427111667502524016164 0ustar cagordonlhea CCfits: Class Members
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CCfits/html/functions_0x6b.html0000644000225700000360000001157311667502524016237 0ustar cagordonlhea CCfits: Class Members
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CCfits/html/namespaces.html0000644000225700000360000000546711667502524015514 0ustar cagordonlhea CCfits: Namespace List
Namespace List
Here is a list of all documented namespaces with brief descriptions:
CCfitsNamespace enclosing all CCfits classes and globals definitions
FITSUtilFITSUtil is a namespace containing functions used internally by CCfits, but which might be of use for other applications
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CCfits/html/namespaceCCfits.html0000644000225700000360000003307311667502524016417 0ustar cagordonlhea CCfits: CCfits Namespace Reference
Classes | Enumerations | Functions
CCfits Namespace Reference

Namespace enclosing all CCfits classes and globals definitions. More...

Classes

class  AsciiTable
 Class Representing Ascii Table Extensions. More...
class  BinTable
 Class Representing Binary Table Extensions. Contains columns with scalar or vector row entries. More...
class  Column
 Abstract base class for Column objects. More...
class  ExtHDU
 base class for all FITS extension HDUs, i.e. Image Extensions and Tables. More...
class  FITS
 Memory object representation of a disk FITS file. More...
class  FitsError
 FitsError is the exception thrown by non-zero cfitsio status codes. More...
class  FitsException
 FitsException is the base class for all exceptions thrown by this library. More...
class  FitsFatal
 [potential] base class for exceptions to be thrown on internal library error. More...
class  HDU
 Base class for all HDU [Header-Data Unit] objects. More...
class  ImageExt
class  Keyword
 Abstract base class defining the interface for Keyword objects. More...
class  PHDU
 class representing the primary HDU for a FITS file. More...
class  Table

Enumerations

enum  ValueType
 CCfits value types and their CFITSIO equivalents (in caps) More...

Functions

std::ostream & operator<< (std::ostream &s, const CCfits::HDU &right)
 Output operator for HDU objects. Primarily for testing purposes.
std::ostream & operator<< (std::ostream &s, const FITS &right)
 Output operator. Calls output operators for HDUs in turn.
std::ostream & operator<< (std::ostream &s, const Column &right)
 output operator for Column objects.

Detailed Description

Namespace enclosing all CCfits classes and globals definitions.

Enumeration Type Documentation

enum CCfits::ValueType

CCfits value types and their CFITSIO equivalents (in caps)

Tnull, Tbit = TBIT, Tbyte = TBYTE, Tlogical = TLOGICAL, Tstring = TSTRING, Tushort = TUSHORT, Tshort = TSHORT, Tuint = TUINT, Tint = TINT, Tulong = TULONG, Tlong = TLONG, Tlonglong = TLONGLONG, Tfloat = TFLOAT, Tdouble = TDOUBLE, Tcomplex = TCOMPLEX, Tdblcomplex=TDBLCOMPLEX, VTbit= -TBIT, VTbyte=-TBYTE, VTlogical=-Tlogical, VTushort=-TUSHORT, VTshort=-TSHORT, VTuint=-TUINT, VTint=-TINT, VTulong=-TULONG, VTlong=-TLONG, VTlonglong=-TLONGLONG, VTfloat=-TFLOAT, VTdouble=-TDOUBLE, VTcomplex=-TCOMPLEX, VTdblcomplex=-TDBLCOMPLEX

Function Documentation

std::ostream & operator<< ( std::ostream &  s,
const FITS &  right 
) [inline]

Output operator. Calls output operators for HDUs in turn.

This operator acts similarly to the ftool fdump for a fits file, except that there is no freedom to output partial information.

The current implementation of this operator for PHDU objects only outputs the array sizes, not the data, which that for tables prints the data also.

Provision of this operator is intended largely for debugging purposes.

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CCfits/html/classCCfits_1_1AsciiTable.html0000644000225700000360000005747011667505546020167 0ustar cagordonlhea CCfits: CCfits::AsciiTable Class Reference
Public Member Functions | Protected Member Functions
CCfits::AsciiTable Class Reference

Class Representing Ascii Table Extensions. More...

#include <AsciiTable.h>

Inheritance diagram for CCfits::AsciiTable:
Inheritance diagram CCfits::Table CCfits::ExtHDU CCfits::HDU

List of all members.

Public Member Functions

virtual void addColumn (ValueType type, const String &columnName, long repeatWidth, const String &colUnit=String(""), long decimals=0, size_t columnNumber=0)
 add a new column to an existing table HDU.
virtual AsciiTable * clone (FITSBase *p) const
 virtual copy constructor
virtual void readData (bool readFlag=false, const std::vector< String > &keys=std::vector< String >())
 read columns and keys specified in the input array.

Protected Member Functions

 AsciiTable (FITSBase *p, const String &hduName=String(""), bool readFlag=false, const std::vector< String > &keys=std::vector< String >(), int version=1)
 reading constructor: Construct a AsciiTable extension from an extension of an existing disk file.
 AsciiTable (FITSBase *p, const String &hduName, int rows, const std::vector< String > &columnName=std::vector< String >(), const std::vector< String > &columnFmt=std::vector< String >(), const std::vector< String > &columnUnit=std::vector< String >(), int version=1)
 writing constructor: create new Ascii Table object with the specified columns
 AsciiTable (FITSBase *p, int number)
 read AsciiTable with HDU number number from existing file.
 ~AsciiTable ()
 destructor.

Detailed Description

Class Representing Ascii Table Extensions.

May only contain columns with scalar row entries and a small range of data types. AsciiTable (re)implements functions prescribed in the Table abstract class. The implementations allow the calling of cfitsio specialized routines for AsciiTable header construction.

Direct instantiation of AsciiTable objects is disallowed: they are created by explicit calls to FITS::addTable( ... ), FITS::read(...) or internally by one of the FITS ctors on initialization. The default for FITS::addTable is to produce BinTable extensions.

Constructor & Destructor Documentation

CCfits::AsciiTable::AsciiTable ( FITSBase *  p,
const String &  hduName = String(""),
bool  readFlag = false,
const std::vector< String > &  keys = std::vector<String>(),
int  version = 1 
) [protected]

reading constructor: Construct a AsciiTable extension from an extension of an existing disk file.

The Table is specified by name and optional version number within the file. An array of strings representing columns or keys indicates which data are to be read. The column data are only read if readFlag is true. Reading on construction is optimized, so it is more efficient to read data at the point of instantiation. This favours a "resource acquisition is initialization" model of data management.

Parameters:
ppointer to FITSBase object for internal use
hduNamename of AsciiTable object to be read.
readFlagflag to determine whether to read data on construction
keys(optional) a list of keywords/columns to be read. The implementation will determine which are keywords. If none are specified, the constructor will simply read the header
version(optional) version number. If not specified, will read the first extension that matches hduName.
CCfits::AsciiTable::AsciiTable ( FITSBase *  p,
const String &  hduName,
int  rows,
const std::vector< String > &  columnName = std::vector<String>(),
const std::vector< String > &  columnFmt = std::vector<String>(),
const std::vector< String > &  columnUnit = std::vector<String>(),
int  version = 1 
) [protected]

writing constructor: create new Ascii Table object with the specified columns

The constructor creates a valid HDU which is ready for Column::write or insertRows operations. The disk FITS file is update accordingly. The data type of each column is determined by the columnFmt argument (TFORM keywords). See cfitsio documentation for acceptable values.

Parameters:
hduNamename of AsciiTable object to be written
rowsnumber of rows in the table (NAXIS2)
columnNamearray of column names for columns to be constructed.
columnFmtarray of column formats for columns to be constructed.
columnUnit(optional) array of units for data in columns.
version(optional) version number for HDU.

The dimensions of columnType, columnName and columnFmt must match, although this is not enforced at present.

Todo:
{enforce equal dimensions for arrays input to AsciiTable, BinTable writing ctor}
CCfits::AsciiTable::AsciiTable ( FITSBase *  p,
int  number 
) [protected]

read AsciiTable with HDU number number from existing file.

This is used internally by methods that need to access HDUs for which no EXTNAME [or equivalent] keyword exists.

Member Function Documentation

void CCfits::AsciiTable::addColumn ( ValueType  type,
const String &  columnName,
long  repeatWidth,
const String &  colUnit = String(""),
long  decimals = 0,
size_t  columnNumber = 0 
) [virtual]

add a new column to an existing table HDU.

Parameters:
typeThe data type of the column to be added
columnNameThe name of the column to be added
repeatWidthfor a string valued, this is the width of a string. For a numeric column it supplies the vector length of the rows. It is ignored for ascii table numeric data.
colUnitan optional field specifying the units of the data (TUNITn)
decimalsoptional parameter specifying the number of decimals for an ascii numeric column
columnNumberoptional parameter specifying column number to be created. If not specified the column is added to the end. If specified, the column is inserted and the columns already read are reindexed. This parameter is provided as a convenience to support existing code rather than recommended.

Reimplemented from CCfits::ExtHDU.

void CCfits::AsciiTable::readData ( bool  readFlag = false,
const std::vector< String > &  keys = std::vector<String>() 
) [virtual]

read columns and keys specified in the input array.

See Table class documentation for further details.

Implements CCfits::ExtHDU.

The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:53 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1AsciiTable.png0000644000225700000360000000131611667502524017764 0ustar cagordonlhea‰PNG  IHDRoÀ=QÍiPLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2]IDATxíÝ]rë `Ž<Ãþ—|@€Nì«6ž£qÊ?,ä<§#6Ò!‘Aﱘ )}}–~¢MëÝŸxm™6ê-N½yþg^[  "¨_ývÖ3ð5O÷î¯Ïœr}ôÿæEçÓ_÷Öõ9Ûõéß?õ´>çzqï+ÏèÑûs^l¤ÍÈ» ¿ÃË9 örŽ£½Ç×'=zôèÑ£G=z{qÄF:$2è=ÎÓ"¥Ï̪óDú8êHm»eÞk³´QWÌÞü_÷æ¼ôÆ-냈 ~õÕã.€’‚3ø#O·ê¯á¾Ž¹ËóçW>´ãVo‘ÏÁ»ÿù–Ç{1ŸëútÇfëåB}ú÷¯É]=-õÆút/0?éÑû+^l¤ÍÈ» ¿ÃË9 örŽ£½Ç×'=zôèÑ£G=z{qÄF:$2è=ÔÓ"¥oœ¤ó¤ Ú9?ó 14Îî5vì{ó–€ê—7ÊC¢ ¡uì{ú¬ÓeQö¤CKpÏ;™içÜåäÓzc]õÌÖM>Or°[ŸöäÞöùù÷o¼åø¬½>q¡>ùûI^Œi3òîÂïðrŽƒ½œcÁhïñõI=zôèÑ£GÞ^ 6BÓBï1€ÒÖF)&¿ŸÅ‘´Ò§ivv÷ 14–óߤdyíÍÛJ€n:¥¾éa‰&¡î±í·÷éPíxíé³N×ø×{Œ§}nÙžMS¿A_=<_ïØóL>[M´l­òi½^F?óÜpû\yãFçü¼©OsNºr~þý—Í{íI>«O¼©Oþ~Ò£÷^lü;?D’w’“3IEND®B`‚CCfits/html/classCCfits_1_1AsciiTable-members.html0000644000225700000360000007052011667502525021600 0ustar cagordonlhea CCfits: Member List
CCfits::AsciiTable Member List
This is the complete list of members for CCfits::AsciiTable, including all inherited members.
addColumn(ValueType type, const String &columnName, long repeatWidth, const String &colUnit=String(""), long decimals=0, size_t columnNumber=0)CCfits::AsciiTable [virtual]
addKey(const String &name, T val, const String &comment)CCfits::HDU
addKey(const Keyword *inKeyword)CCfits::HDU
AsciiTable(FITSBase *p, const String &hduName=String(""), bool readFlag=false, const std::vector< String > &keys=std::vector< String >(), int version=1)CCfits::AsciiTable [protected]
AsciiTable(FITSBase *p, const String &hduName, int rows, const std::vector< String > &columnName=std::vector< String >(), const std::vector< String > &columnFmt=std::vector< String >(), const std::vector< String > &columnUnit=std::vector< String >(), int version=1)CCfits::AsciiTable [protected]
AsciiTable(FITSBase *p, int number)CCfits::AsciiTable [protected]
axes() const CCfits::HDU [inline]
axis(size_t index) const CCfits::HDU [inline]
bitpix() const CCfits::HDU [inline]
clone(FITSBase *p) const CCfits::AsciiTable [virtual]
column(const String &colName, bool caseSensitive=true) const CCfits::Table [virtual]
column(int colIndex) const CCfits::Table [virtual]
column() const CCfits::Table [inline, virtual]
column()CCfits::Table [inline, virtual]
comment() const CCfits::HDU [inline]
copyAllKeys(const HDU *inHdu)CCfits::HDU
deleteColumn(const String &columnName)CCfits::Table [virtual]
deleteKey(const String &doomed)CCfits::HDU
deleteRows(long first, long number=1)CCfits::Table
deleteRows(const std::vector< long > &rowList)CCfits::Table
ExtHDU(const ExtHDU &right)CCfits::ExtHDU
ExtHDU(FITSBase *p, HduType xtype, const String &hduName, int version)CCfits::ExtHDU [protected]
ExtHDU(FITSBase *p, HduType xtype, const String &hduName, int bitpix, int naxis, const std::vector< long > &axes, int version)CCfits::ExtHDU [protected]
ExtHDU(FITSBase *p, HduType xtype, int number)CCfits::ExtHDU [protected]
fitsPointer() const CCfits::HDU
gcount() const CCfits::ExtHDU [inline, protected]
gcount(long value)CCfits::ExtHDU [inline, protected]
getChecksum() const CCfits::HDU
getComments()CCfits::HDU
getHistory()CCfits::HDU
getRowsize() const CCfits::Table [virtual]
HDU(const HDU &right)CCfits::HDU
HDU(FITSBase *p=0)CCfits::HDU [protected]
HDU(FITSBase *p, int bitpix, int naxis, const std::vector< long > &axes)CCfits::HDU [protected]
history() const CCfits::HDU [inline]
index(int value)CCfits::HDU [inline]
index() const CCfits::HDU [inline]
init(bool readFlag=false, const std::vector< String > &keys=std::vector< String >())CCfits::Table [protected]
insertRows(long first, long number=1)CCfits::Table
isCompressed() const CCfits::ExtHDU
keyWord()CCfits::HDU [inline]
keyWord(const String &keyName)CCfits::HDU [inline]
keyWord() const CCfits::HDU [inline]
keyWord(const string &keyname) const CCfits::HDU [inline]
keywordCategories()CCfits::HDU [static]
makeThisCurrent() const CCfits::ExtHDU [virtual]
name() const CCfits::ExtHDU [inline]
naxes()CCfits::HDU [inline, protected]
numCols() const CCfits::Table [inline, virtual]
numCols(int value)CCfits::Table [inline, protected]
operator!=(const HDU &right) const CCfits::HDU
operator==(const HDU &right) const CCfits::HDU
parent() const CCfits::HDU
pcount() const CCfits::ExtHDU [inline, protected]
pcount(long value)CCfits::ExtHDU [inline, protected]
read(std::valarray< S > &image)CCfits::ExtHDU
read(std::valarray< S > &image, long first, long nElements, S *nullValue)CCfits::ExtHDU
read(std::valarray< S > &image, const std::vector< long > &first, long nElements, S *nullValue)CCfits::ExtHDU
read(std::valarray< S > &image, const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::vector< long > &stride)CCfits::ExtHDU
read(std::valarray< S > &image, long first, long nElements)CCfits::ExtHDU
read(std::valarray< S > &image, const std::vector< long > &first, long nElements)CCfits::ExtHDU
read(std::valarray< S > &image, const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::vector< long > &stride, S *nullValue)CCfits::ExtHDU
readAllKeys()CCfits::HDU
readData(bool readFlag=false, const std::vector< String > &keys=std::vector< String >())CCfits::AsciiTable [virtual]
readHduName(const fitsfile *fptr, int hduIndex, String &hduName, int &hduVersion)CCfits::ExtHDU [static]
readKey(const String &keyName, T &val)CCfits::HDU
readKeys(std::vector< String > &keyNames, std::vector< T > &vals)CCfits::HDU
rows() const CCfits::Table [inline, virtual]
rows(long numRows)CCfits::Table [inline]
scale() const CCfits::HDU [inline, virtual]
scale(double value)CCfits::HDU [inline, virtual]
setColumn(const String &colname, Column *value)CCfits::Table [protected, virtual]
suppressScaling(bool toggle=true)CCfits::HDU
Table(const Table &right)CCfits::Table
Table(FITSBase *p, HduType xtype, const String &hduName, int rows, const std::vector< String > &columnName, const std::vector< String > &columnFmt, const std::vector< String > &columnUnit=std::vector< String >(), int version=1)CCfits::Table [protected]
Table(FITSBase *p, HduType xtype, const String &hduName=String(""), int version=1)CCfits::Table [protected]
Table(FITSBase *p, HduType xtype, int number)CCfits::Table [protected]
updateChecksum()CCfits::HDU
updateRows()CCfits::Table
verifyChecksum() const CCfits::HDU
version() const CCfits::ExtHDU [inline]
version(int value)CCfits::ExtHDU [inline]
write(const std::vector< long > &first, long nElements, const std::valarray< S > &data, S *nullValue)CCfits::ExtHDU
write(long first, long nElements, const std::valarray< S > &data, S *nullValue)CCfits::ExtHDU
write(const std::vector< long > &first, long nElements, const std::valarray< S > &data)CCfits::ExtHDU
write(long first, long nElements, const std::valarray< S > &data)CCfits::ExtHDU
write(const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::valarray< S > &data)CCfits::ExtHDU
writeChecksum()CCfits::HDU
writeComment(const String &comment="Generic Comment")CCfits::HDU
writeDate()CCfits::HDU
writeHistory(const String &history="Generic History String")CCfits::HDU
xtension() const CCfits::ExtHDU [inline, protected]
xtension(HduType value)CCfits::ExtHDU [inline, protected]
zero() const CCfits::HDU [inline, virtual]
zero(double value)CCfits::HDU [inline, virtual]
~AsciiTable()CCfits::AsciiTable [protected]
~ExtHDU()CCfits::ExtHDU [virtual]
~HDU()CCfits::HDU [protected, virtual]
~Table()CCfits::Table [virtual]
Generated on Tue Dec 6 2011 16:12:53 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1BinTable.html0000644000225700000360000005427111667505546017643 0ustar cagordonlhea CCfits: CCfits::BinTable Class Reference
Public Member Functions | Protected Member Functions
CCfits::BinTable Class Reference

Class Representing Binary Table Extensions. Contains columns with scalar or vector row entries. More...

#include <BinTable.h>

Inheritance diagram for CCfits::BinTable:
Inheritance diagram CCfits::Table CCfits::ExtHDU CCfits::HDU

List of all members.

Public Member Functions

virtual void addColumn (ValueType type, const String &columnName, long repeatWidth, const String &colUnit=String(""), long decimals=0, size_t columnNumber=0)
 add a new column to an existing table HDU.
virtual BinTable * clone (FITSBase *p) const
 virtual copy constructor
virtual void readData (bool readFlag=false, const std::vector< String > &keys=std::vector< String >())
 read columns and keys specified in the input array.

Protected Member Functions

 BinTable (FITSBase *p, const String &hduName=String(""), bool readFlag=false, const std::vector< String > &keys=std::vector< String >(), int version=1)
 reading constructor.
 BinTable (FITSBase *p, const String &hduName, int rows, const std::vector< String > &columnName=std::vector< String >(), const std::vector< String > &columnFmt=std::vector< String >(), const std::vector< String > &columnUnit=std::vector< String >(), int version=1)
 writing constructor
 BinTable (FITSBase *p, int number)
 read BinTable with HDU number number from existing file represented by fitsfile pointer p.
 ~BinTable ()
 destructor.

Detailed Description

Class Representing Binary Table Extensions. Contains columns with scalar or vector row entries.

BinTable (re)implements functions prescribed in the Table abstract class. The implementations allow the calling of cfitsio specialized routines for BinTable header construction. functions particular to the BinTable class include those dealing with variable width columns

Direct instantiation of BinTable objects is disallowed: they are created by explicit calls to FITS::addTable( ... ), FITS::read(...) or internally by one of the FITS ctors on initialization. For addTable, creation of BinTables is the default.

Constructor & Destructor Documentation

CCfits::BinTable::BinTable ( FITSBase *  p,
const String &  hduName = String(""),
bool  readFlag = false,
const std::vector< String > &  keys = std::vector<String>(),
int  version = 1 
) [protected]

reading constructor.

Construct a BinTable extension from an extension of an existing disk file. The Table is specified by name and optional version number within the file. An array of strings representing columns or keys indicates which data are to be read. The column data are only read if readFlag is true. Reading on construction is optimized, so it is more efficient to read data at the point of instantiation. This favours a "resource acquisition is initialization" model of data management.

Parameters:
pPointer to FITSBase class, an internal implementation detail
hduNamename of BinTable object to be read.
readFlagflag to determine whether to read data on construction
keys(optional) a list of keywords/columns to be read. The implementation will determine which are keywords. If none are specified, the constructor will simply read the header
version(optional) version number. If not specified, will read the first extension that matches hduName.
CCfits::BinTable::BinTable ( FITSBase *  p,
const String &  hduName,
int  rows,
const std::vector< String > &  columnName = std::vector<String>(),
const std::vector< String > &  columnFmt = std::vector<String>(),
const std::vector< String > &  columnUnit = std::vector<String>(),
int  version = 1 
) [protected]

writing constructor

The constructor creates a valid HDU which is ready for Column::write or insertRows operations. The disk FITS file is update accordingly. The data type of each column is determined by the columnFmt argument (TFORM keywords). See cfitsio documentation for acceptable values.

Parameters:
pPointer to FITSBase class, an internal implementation detail
hduNamename of BinTable object to be written
rowsnumber of rows in the table (NAXIS2)
columnNamearray of column names for columns to be constructed.
columnFmtarray of column formats for columns to be constructed.
columnUnit(optional) array of units for data in columns.
version(optional) version number for HDU.

The dimensions of columnType, columnName and columnFmt must match, but this is not enforced.

Member Function Documentation

void CCfits::BinTable::addColumn ( ValueType  type,
const String &  columnName,
long  repeatWidth,
const String &  colUnit = String(""),
long  decimals = 0,
size_t  columnNumber = 0 
) [virtual]

add a new column to an existing table HDU.

Parameters:
typeThe data type of the column to be added
columnNameThe name of the column to be added
repeatWidthfor a string valued, this is the width of a string. For a numeric column it supplies the vector length of the rows. It is ignored for ascii table numeric data.
colUnitan optional field specifying the units of the data (TUNITn)
decimalsoptional parameter specifying the number of decimals for an ascii numeric column
columnNumberoptional parameter specifying column number to be created. If not specified the column is added to the end. If specified, the column is inserted and the columns already read are reindexed. This parameter is provided as a convenience to support existing code rather than recommended.

Reimplemented from CCfits::ExtHDU.

void CCfits::BinTable::readData ( bool  readFlag = false,
const std::vector< String > &  keys = std::vector<String>() 
) [virtual]

read columns and keys specified in the input array.

See Table class documentation for further details.

Implements CCfits::ExtHDU.

The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:53 for CCfits by   doxygen 1.7.5.1
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CCfits::BinTable Member List
This is the complete list of members for CCfits::BinTable, including all inherited members.
addColumn(ValueType type, const String &columnName, long repeatWidth, const String &colUnit=String(""), long decimals=0, size_t columnNumber=0)CCfits::BinTable [virtual]
addKey(const String &name, T val, const String &comment)CCfits::HDU
addKey(const Keyword *inKeyword)CCfits::HDU
axes() const CCfits::HDU [inline]
axis(size_t index) const CCfits::HDU [inline]
BinTable(FITSBase *p, const String &hduName=String(""), bool readFlag=false, const std::vector< String > &keys=std::vector< String >(), int version=1)CCfits::BinTable [protected]
BinTable(FITSBase *p, const String &hduName, int rows, const std::vector< String > &columnName=std::vector< String >(), const std::vector< String > &columnFmt=std::vector< String >(), const std::vector< String > &columnUnit=std::vector< String >(), int version=1)CCfits::BinTable [protected]
BinTable(FITSBase *p, int number)CCfits::BinTable [protected]
bitpix() const CCfits::HDU [inline]
clone(FITSBase *p) const CCfits::BinTable [virtual]
column(const String &colName, bool caseSensitive=true) const CCfits::Table [virtual]
column(int colIndex) const CCfits::Table [virtual]
column() const CCfits::Table [inline, virtual]
column()CCfits::Table [inline, virtual]
comment() const CCfits::HDU [inline]
copyAllKeys(const HDU *inHdu)CCfits::HDU
deleteColumn(const String &columnName)CCfits::Table [virtual]
deleteKey(const String &doomed)CCfits::HDU
deleteRows(long first, long number=1)CCfits::Table
deleteRows(const std::vector< long > &rowList)CCfits::Table
ExtHDU(const ExtHDU &right)CCfits::ExtHDU
ExtHDU(FITSBase *p, HduType xtype, const String &hduName, int version)CCfits::ExtHDU [protected]
ExtHDU(FITSBase *p, HduType xtype, const String &hduName, int bitpix, int naxis, const std::vector< long > &axes, int version)CCfits::ExtHDU [protected]
ExtHDU(FITSBase *p, HduType xtype, int number)CCfits::ExtHDU [protected]
fitsPointer() const CCfits::HDU
gcount() const CCfits::ExtHDU [inline, protected]
gcount(long value)CCfits::ExtHDU [inline, protected]
getChecksum() const CCfits::HDU
getComments()CCfits::HDU
getHistory()CCfits::HDU
getRowsize() const CCfits::Table [virtual]
HDU(const HDU &right)CCfits::HDU
HDU(FITSBase *p=0)CCfits::HDU [protected]
HDU(FITSBase *p, int bitpix, int naxis, const std::vector< long > &axes)CCfits::HDU [protected]
history() const CCfits::HDU [inline]
index(int value)CCfits::HDU [inline]
index() const CCfits::HDU [inline]
init(bool readFlag=false, const std::vector< String > &keys=std::vector< String >())CCfits::Table [protected]
insertRows(long first, long number=1)CCfits::Table
isCompressed() const CCfits::ExtHDU
keyWord()CCfits::HDU [inline]
keyWord(const String &keyName)CCfits::HDU [inline]
keyWord() const CCfits::HDU [inline]
keyWord(const string &keyname) const CCfits::HDU [inline]
keywordCategories()CCfits::HDU [static]
makeThisCurrent() const CCfits::ExtHDU [virtual]
name() const CCfits::ExtHDU [inline]
naxes()CCfits::HDU [inline, protected]
numCols() const CCfits::Table [inline, virtual]
numCols(int value)CCfits::Table [inline, protected]
operator!=(const HDU &right) const CCfits::HDU
operator==(const HDU &right) const CCfits::HDU
parent() const CCfits::HDU
pcount() const CCfits::ExtHDU [inline, protected]
pcount(long value)CCfits::ExtHDU [inline, protected]
read(std::valarray< S > &image)CCfits::ExtHDU
read(std::valarray< S > &image, long first, long nElements, S *nullValue)CCfits::ExtHDU
read(std::valarray< S > &image, const std::vector< long > &first, long nElements, S *nullValue)CCfits::ExtHDU
read(std::valarray< S > &image, const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::vector< long > &stride)CCfits::ExtHDU
read(std::valarray< S > &image, long first, long nElements)CCfits::ExtHDU
read(std::valarray< S > &image, const std::vector< long > &first, long nElements)CCfits::ExtHDU
read(std::valarray< S > &image, const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::vector< long > &stride, S *nullValue)CCfits::ExtHDU
readAllKeys()CCfits::HDU
readData(bool readFlag=false, const std::vector< String > &keys=std::vector< String >())CCfits::BinTable [virtual]
readHduName(const fitsfile *fptr, int hduIndex, String &hduName, int &hduVersion)CCfits::ExtHDU [static]
readKey(const String &keyName, T &val)CCfits::HDU
readKeys(std::vector< String > &keyNames, std::vector< T > &vals)CCfits::HDU
rows() const CCfits::Table [inline, virtual]
rows(long numRows)CCfits::Table [inline]
scale() const CCfits::HDU [inline, virtual]
scale(double value)CCfits::HDU [inline, virtual]
setColumn(const String &colname, Column *value)CCfits::Table [protected, virtual]
suppressScaling(bool toggle=true)CCfits::HDU
Table(const Table &right)CCfits::Table
Table(FITSBase *p, HduType xtype, const String &hduName, int rows, const std::vector< String > &columnName, const std::vector< String > &columnFmt, const std::vector< String > &columnUnit=std::vector< String >(), int version=1)CCfits::Table [protected]
Table(FITSBase *p, HduType xtype, const String &hduName=String(""), int version=1)CCfits::Table [protected]
Table(FITSBase *p, HduType xtype, int number)CCfits::Table [protected]
updateChecksum()CCfits::HDU
updateRows()CCfits::Table
verifyChecksum() const CCfits::HDU
version() const CCfits::ExtHDU [inline]
version(int value)CCfits::ExtHDU [inline]
write(const std::vector< long > &first, long nElements, const std::valarray< S > &data, S *nullValue)CCfits::ExtHDU
write(long first, long nElements, const std::valarray< S > &data, S *nullValue)CCfits::ExtHDU
write(const std::vector< long > &first, long nElements, const std::valarray< S > &data)CCfits::ExtHDU
write(long first, long nElements, const std::valarray< S > &data)CCfits::ExtHDU
write(const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::valarray< S > &data)CCfits::ExtHDU
writeChecksum()CCfits::HDU
writeComment(const String &comment="Generic Comment")CCfits::HDU
writeDate()CCfits::HDU
writeHistory(const String &history="Generic History String")CCfits::HDU
xtension() const CCfits::ExtHDU [inline, protected]
xtension(HduType value)CCfits::ExtHDU [inline, protected]
zero() const CCfits::HDU [inline, virtual]
zero(double value)CCfits::HDU [inline, virtual]
~BinTable()CCfits::BinTable [protected]
~ExtHDU()CCfits::ExtHDU [virtual]
~HDU()CCfits::HDU [protected, virtual]
~Table()CCfits::Table [virtual]
Generated on Tue Dec 6 2011 16:12:53 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Column.html0000644000225700000360000027416011667502525017413 0ustar cagordonlhea CCfits: CCfits::Column Class Reference
Classes | Public Member Functions | Protected Member Functions
CCfits::Column Class Reference

Abstract base class for Column objects. More...

#include <Column.h>

Inherited by CCfits::ColumnData< T >, and CCfits::ColumnVectorData< T >.

List of all members.

Classes

class  InsufficientElements
 Exception thrown if the data supplied for a write operation is less than declared. More...
class  InvalidDataType
 Exception thrown for invalid data type inputs. More...
class  InvalidNumberOfRows
 Exception thrown if user enters a non-positive number for the number of rows to write. More...
class  InvalidRowNumber
 Exception thrown on attempting to read a row number beyond the end of a table. More...
class  InvalidRowParameter
 Exception thrown on incorrect row writing request. More...
class  NoNullValue
 Exception thrown if a null value is specified without support from existing column header. More...
class  RangeError
 exception to be thrown for inputs that cause range errors in column read operations. More...
class  WrongColumnType
 Exception thrown on attempting to access a scalar column as vector data. More...

Public Member Functions

 Column (const Column &right)
 copy constructor, used in copying Columns to standard library containers.
virtual ~Column ()
 destructor.
template<typename T >
void addNullValue (T nullVal)
 Set the TNULLn keyword for the column.
const String & dimen () const
 return TDIMn keyword
const String & display () const
 return TDISPn keyword
const String & format () const
 return TFORMn keyword
template<typename T >
bool getNullValue (T *nullVal) const
 Get the value of the TNULLn keyword for the column.
int index () const
 get the Column index (the n in TTYPEn etc).
bool isRead () const
 flag set to true if the entire column data has been read from disk
const String & name () const
 return name of Column (TTYPEn keyword)
Table * parent () const
 return a pointer to the Table which owns this Column
template<typename S >
void read (std::vector< S > &vals, long first, long last)
 Retrieve data from a scalar column into a std::vector.
template<typename S >
void read (std::valarray< S > &vals, long first, long last)
 Retrieve data from a scalar column into a std::valarray.
template<typename S >
void read (std::valarray< S > &vals, long rows)
 return a single row of a vector column into a std::valarray
template<typename S >
void read (std::vector< S > &vals, long first, long last, S *nullValue)
 Retrieve data from a scalar column into a std::vector>, applying nullValue when relevant.
template<typename S >
void read (std::valarray< S > &vals, long first, long last, S *nullValue)
 Retrieve data from a scalar column into a std::valarray, applying nullValue when relevant.
template<typename S >
void read (std::valarray< S > &vals, long rows, S *nullValue)
 return a single row of a vector column into a std::valarray, setting undefined values
template<typename S >
void readArrays (std::vector< std::valarray< S > > &vals, long first, long last)
 return a set of rows of a vector column into a vector of valarrays
template<typename S >
void readArrays (std::vector< std::valarray< S > > &vals, long first, long last, S *nullValue)
 return a set of rows of a vector column into a container, setting undefined values
virtual void readData (long firstRow, long nelements, long firstElem=1)=0
 Read (or reread) data from the disk into the Column object's internal arrays.
size_t repeat () const
 get the repeat count for the rows
void resetRead ()
 reset the Column's isRead flag to false
int rows () const
 return the number of rows in the table.
double scale () const
 get TSCALn value
virtual void setDimen ()
 set the TDIMn keyword.
void setDisplay ()
 set the TDISPn keyword
ValueType type () const
 returns the data type of the column
const String & unit () const
 get units of data in Column (TUNITn keyword)
bool varLength () const
 boolean, set to true if Column has variable length vector rows.
long width () const
 return column data width
template<typename S >
void write (const std::vector< S > &indata, long firstRow)
 write a vector of values into a scalar column starting with firstRow
template<typename S >
void write (const std::valarray< S > &indata, long firstRow)
 write a valarray of values into a scalar column starting with firstRow
template<typename S >
void write (S *indata, long nRows, long firstRow)
 write a C array of size nRows into a scalar Column starting with row firstRow.
template<typename S >
void write (const std::vector< S > &indata, long firstRow, S *nullValue)
 write a vector of values into a scalar column starting with firstRow, replacing elements equal to nullValue with the FITS null value.
template<typename S >
void write (const std::valarray< S > &indata, long firstRow, S *nullValue)
 write a valarray of values into a scalar column starting with firstRow, replacing elements equal to nullValue with the FITS null value.
template<typename S >
void write (S *indata, long nRows, long firstRow, S *nullValue)
 write a C array into a scalar Column, processing undefined values.
template<typename S >
void write (const std::valarray< S > &indata, long nRows, long firstRow)
 write a valarray of values into a range of rows of a vector column.
template<typename S >
void write (const std::vector< S > &indata, long nRows, long firstRow)
 write a vector of values into a range of rows of a vector column
template<typename S >
void write (S *indata, long nElements, long nRows, long firstRow)
 write a C array of values into a range of rows of a vector column
template<typename S >
void write (const std::valarray< S > &indata, long nRows, long firstRow, S *nullValue)
 write a valarray of values into a range of rows of a vector column.
template<typename S >
void write (const std::vector< S > &indata, long nRows, long firstRow, S *nullValue)
 write a vector of values into a range of rows of a vector column, processing undefined values
template<typename S >
void write (S *indata, long nElements, long nRows, long firstRow, S *nullValue)
 write a C array of values into a range of rows of a vector column, processing undefined values.
template<typename S >
void write (const std::valarray< S > &indata, const std::vector< long > &vectorLengths, long firstRow)
 write a valarray of values into a column with specified number of entries written per row.
template<typename S >
void write (const std::vector< S > &indata, const std::vector< long > &vectorLengths, long firstRow)
 write a vector of values into a column with specified number of entries written per row.
template<typename S >
void write (S *indata, long nElements, const std::vector< long > &vectorLengths, long firstRow)
 write a C-array of values of size nElements into a vector column with specified number of entries written per row.
template<typename S >
void writeArrays (const std::vector< std::valarray< S > > &indata, long firstRow)
 write a vector of valarray objects to the column, starting at row firstRow >= 1
template<typename S >
void writeArrays (const std::vector< std::valarray< S > > &indata, long firstRow, S *nullValue)
 write a vector of valarray objects to the column, starting at row firstRow >= 1, processing undefined values
double zero () const
 get TZEROn value

Protected Member Functions

 Column (int columnIndex, const String &columnName, ValueType type, const String &format, const String &unit, Table *p, int rpt=1, long w=1, const String &comment="")
 new column creation constructor
 Column (Table *p=0)
 Simple constructor to be called by subclass reading ctors.
const String & comment () const
 retrieve comment for Column
fitsfile * fitsPointer ()
 fits pointer corresponding to fits file containing column data.
void makeHDUCurrent ()
 make HDU containing this the current HDU of the fits file.
virtual std::ostream & put (std::ostream &s) const
 internal implementation of << operator.

Detailed Description

Abstract base class for Column objects.

Columns are the data containers used in FITS tables. Columns of scalar type (one entry per cell) are implemented by the template subclass ColumnData<T>. Columns of vector type (vector and variable rows) are implemented with the template subclass ColumnVectorData<T>. AsciiTables may only contain Columns of type ColumnData<T>, where T is an implemented FITS data type (see the CCfits.h header for a complete list. This requirement is enforced by ensuring that AsciiTable's addColumn method may only create an AsciiTable compatible column. The ColumnData<T> class stores its data in a std::vector<T> object.

BinTables may contain either ColumnData<T> or ColumnVectorData<T>. For ColumnVectorData, T must be a numeric type: string vectors are handled by ColumnData<T>; string arrays are not supported. The internal representation of the data is a std::vector<std::valarray<T> > object. The std::valarray class is designed for efficient numeric processing and has many vectorized numeric and transcendental functions defined on it.

Member template functions for read/write operations are provided in multiple overloads as the interface to data operations. Implicit data type conversions are supported but where they are required make the operations less efficient. Reading numeric column data as character arrays, supported by cfitsio, is not supported by CCfits.

As a base class, Column provides protected accessor/mutator inline functions to allow only its subclasses to access data members.

Constructor & Destructor Documentation

CCfits::Column::Column ( const Column &  right)

copy constructor, used in copying Columns to standard library containers.

The copy constructor is for internal use only: it does not affect the disk fits file associated with the object.

CCfits::Column::Column ( int  columnIndex,
const String &  columnName,
ValueType  type,
const String &  format,
const String &  unit,
Table *  p,
int  rpt = 1,
long  w = 1,
const String &  comment = "" 
) [protected]

new column creation constructor

This constructor allows the specification of:

Parameters:
columnIndexThe column number
columnNameThe column name, keyword TTYPEn
typeused for determining class of T in ColumnData<T>, ColumnVectorData<T>
formatthe column data format, TFORMn keyword
unitthe column data unit, TUNITn keyword
pthe Table pointer
rpt(optional) repeat count for the row ( == 1 for AsciiTables)
wthe row width
commentcomment to be added to the header.

Member Function Documentation

template<typename T >
void CCfits::Column::addNullValue ( T  nullVal)

Set the TNULLn keyword for the column.

Only relevant for integer valued columns, TNULLn is the value used by cfitsio in undefined processing. All entries in the table equal to an input "null value" are set equal to the value of TNULLn. (For floating point columns a system NaN value is used).

const String & CCfits::Column::dimen ( ) const [inline]

return TDIMn keyword

represents dimensions of data arrays in vector columns. for scalar columns, returns a default value.

const String & CCfits::Column::display ( ) const [inline]

return TDISPn keyword

TDISPn is suggested format for output of column data.

const String & CCfits::Column::format ( ) const [inline]

return TFORMn keyword

TFORMn specifies data format stored in disk file.

template<typename T >
bool CCfits::Column::getNullValue ( T *  nullVal) const

Get the value of the TNULLn keyword for the column.

Only relevant for integer valued columns. If the TNULLn keyword is present, its value will be written to *nullVal and the function returns true. If the keyword is not found or its value is undefined, the function returns false and *nullVal is not modified.

Parameters:
nullValA pointer to the variable for storing the TNULLn value.
template<typename S >
void CCfits::Column::read ( std::vector< S > &  vals,
long  first,
long  last 
)

Retrieve data from a scalar column into a std::vector.

This and the following functions perform implicit data conversions. An exception will be thrown if no conversion exists.

Parameters:
valsThe output container. The function will resize this as necessary
first,lastthe span of row numbers to read.
template<typename S >
void CCfits::Column::read ( std::valarray< S > &  vals,
long  first,
long  last 
)

Retrieve data from a scalar column into a std::valarray.

Parameters:
valsThe output container. The function will resize this as necessary
first,lastthe span of row numbers to read.
template<typename S >
void CCfits::Column::read ( std::valarray< S > &  vals,
long  rows 
)

return a single row of a vector column into a std::valarray

Parameters:
valsThe output valarray object
rowsThe row number to be retrieved (starting at 1).
template<typename S >
void CCfits::Column::read ( std::vector< S > &  vals,
long  first,
long  last,
S *  nullValue 
)

Retrieve data from a scalar column into a std::vector>, applying nullValue when relevant.

If both nullValue and *nullValue are not 0, then any undefined values in the file will be converted to *nullValue when copied into the vals vector. See cfitsio documentation for further details

Parameters:
valsThe output container. The function will resize this as necessary
first,lastthe span of row numbers to read.
nullValuepointer to value to be applied to undefined elements.
template<typename S >
void CCfits::Column::read ( std::valarray< S > &  vals,
long  first,
long  last,
S *  nullValue 
)

Retrieve data from a scalar column into a std::valarray, applying nullValue when relevant.

If both nullValue and *nullValue are not 0, then any undefined values in the file will be converted to *nullValue when copied into the vals valarray. See cfitsio documentation for further details

Parameters:
valsThe output container. The function will resize this as necessary
first,lastthe span of row numbers to read.
nullValuepointer to value to be applied to undefined elements.
template<typename S >
void CCfits::Column::readArrays ( std::vector< std::valarray< S > > &  vals,
long  first,
long  last 
)

return a set of rows of a vector column into a vector of valarrays

Parameters:
valsThe output container. The function will resize this as necessary
first,lastthe span of row numbers to read.
template<typename S >
void CCfits::Column::readArrays ( std::vector< std::valarray< S > > &  vals,
long  first,
long  last,
S *  nullValue 
)

return a set of rows of a vector column into a container, setting undefined values

Parameters:
valsThe output container. The function will resize this as necessary
first,lastthe span of row numbers to read.
nullValuepointer to integer value regarded as undefined
void CCfits::Column::readData ( long  firstRow = 1,
long  nelements = 1,
long  firstElem = 1 
) [pure virtual]

Read (or reread) data from the disk into the Column object's internal arrays.

This function normally does not need to be called. See the resetRead function for an alternative way of performing a reread from disk.

Parameters:
firstRowThe first row to be read
nelementsThe number of elements to read
firstElemThe number of the element on the first row to start at (ignored for scalar columns)
void CCfits::Column::resetRead ( ) [inline]

reset the Column's isRead flag to false

This forces the data to be reread from the disk the next time a read command is called on the Column, rather than simply retrieving the data already stored in the Column object's internal arrays. This may be useful for example if trying to reread a Column using a different nullValue argument than for an earlier read.

int CCfits::Column::rows ( ) const

return the number of rows in the table.

return number of rows in the Column

double CCfits::Column::scale ( ) const [inline]

get TSCALn value

TSCALn is used to convert a data array represented on disk in integer format as floating. Useful for compact storage of digitized data.

template<typename S >
void CCfits::Column::write ( const std::vector< S > &  indata,
long  firstRow 
)

write a vector of values into a scalar column starting with firstRow

Parameters:
indataThe data to be written.
firstRowThe first row to be written
template<typename S >
void CCfits::Column::write ( const std::valarray< S > &  indata,
long  firstRow 
)

write a valarray of values into a scalar column starting with firstRow

Parameters:
indataThe data to be written.
firstRowThe first row to be written
template<typename S >
void CCfits::Column::write ( S *  indata,
long  nRows,
long  firstRow 
)

write a C array of size nRows into a scalar Column starting with row firstRow.

Parameters:
indataThe data to be written.
nRowsThe size of the data array to be written
firstRowThe first row to be written
template<typename S >
void CCfits::Column::write ( const std::vector< S > &  indata,
long  firstRow,
S *  nullValue 
)

write a vector of values into a scalar column starting with firstRow, replacing elements equal to nullValue with the FITS null value.

If nullValue is not 0, the appropriate FITS null value will be substituted for all elements of indata equal to *nullValue. For integer type columns there must be a pre-existing TNULLn keyword to define the FITS null value, otherwise a FitsError exception is thrown. For floating point columns, the FITS null is the IEEE NaN (Not-a-Number) value. See the cfitsio fits_write_colnull function documentation for more details.

Parameters:
indataThe data to be written.
firstRowThe first row to be written
nullValuePointer to the value for which equivalent indata elements will be replaced in the file with the appropriate FITS null value.
template<typename S >
void CCfits::Column::write ( const std::valarray< S > &  indata,
long  firstRow,
S *  nullValue 
)

write a valarray of values into a scalar column starting with firstRow, replacing elements equal to nullValue with the FITS null value.

If nullValue is not 0, the appropriate FITS null value will be substituted for all elements of indata equal to *nullValue. For integer type columns there must be a pre-existing TNULLn keyword to define the FITS null value, otherwise a FitsError exception is thrown. For floating point columns, the FITS null is the IEEE NaN (Not-a-Number) value. See the cfitsio fits_write_colnull function documentation for more details.

Parameters:
indataThe data to be written.
firstRowThe first row to be written
nullValuePointer to the value for which equivalent indata elements will be replaced in the file with the appropriate FITS null value.
template<typename S >
void CCfits::Column::write ( S *  indata,
long  nRows,
long  firstRow,
S *  nullValue 
)

write a C array into a scalar Column, processing undefined values.

Parameters:
indataThe data to be written.
nRowsThe size of the data array to be written
firstRowThe first row to be written
nullValuePointer to the value in the input array to be set to undefined values
template<typename S >
void CCfits::Column::write ( const std::valarray< S > &  indata,
long  nRows,
long  firstRow 
)

write a valarray of values into a range of rows of a vector column.

The primary use of this is for fixed width columns, in which case Column's repeat attribute is used to determine how many elements are written to each row; if indata.size() is too small an exception will be thrown. If the column is variable width, the call will write indata.size()/nRows elements to each row.

Parameters:
indataThe data to be written.
nRowsthe number of rows to which to write the data.
firstRowThe first row to be written
template<typename S >
void CCfits::Column::write ( const std::vector< S > &  indata,
long  nRows,
long  firstRow 
)

write a vector of values into a range of rows of a vector column

The primary use of this is for fixed width columns, in which case Column's repeat attribute is used to determine how many elements are written to each row; if indata.size() is too small an exception will be thrown. If the column is variable width, the call will write indata.size()/nRows elements to each row.

Parameters:
indataThe data to be written.
nRowsthe number of rows to which to write the data.
firstRowThe first row to be written
template<typename S >
void CCfits::Column::write ( S *  indata,
long  nElements,
long  nRows,
long  firstRow 
)

write a C array of values into a range of rows of a vector column

Details are as for vector input; only difference is the need to supply the size of the C-array.

Parameters:
indataThe data to be written.
nElementsThe size of indata
nRowsthe number of rows to which to write the data.
firstRowThe first row to be written
template<typename S >
void CCfits::Column::write ( const std::valarray< S > &  indata,
long  nRows,
long  firstRow,
S *  nullValue 
)

write a valarray of values into a range of rows of a vector column.

see version without undefined processing for details.

template<typename S >
void CCfits::Column::write ( const std::vector< S > &  indata,
long  nRows,
long  firstRow,
S *  nullValue 
)

write a vector of values into a range of rows of a vector column, processing undefined values

see version without undefined processing for details.

template<typename S >
void CCfits::Column::write ( S *  indata,
long  nElements,
long  nRows,
long  firstRow,
S *  nullValue 
)

write a C array of values into a range of rows of a vector column, processing undefined values.

see version without undefined processing for details.

template<typename S >
void CCfits::Column::write ( const std::valarray< S > &  indata,
const std::vector< long > &  vectorLengths,
long  firstRow 
)

write a valarray of values into a column with specified number of entries written per row.

Data are written into vectorLengths.size() rows, with vectorLength[n] elements written to row n+firstRow -1. Although primarily intended for wrapping calls to multiple variable-width vector column rows, it may also be used to write a variable number of elements to fixed-width column rows.

When writing to fixed-width column rows, if the number of elements sent to a particular row are fewer than the column's repeat value, the remaining elements in the row will not be modified.

Since cfitsio does not support null value processing for variable width columns this function and its variants do not have version which process undefined values

Parameters:
indataThe data to be written
vectorLengthsthe number of elements to write to each successive row.
firstRowthe first row to be written.
template<typename S >
void CCfits::Column::write ( const std::vector< S > &  indata,
const std::vector< long > &  vectorLengths,
long  firstRow 
)

write a vector of values into a column with specified number of entries written per row.

Intended for writing a varying number of elements to multiple rows in a vector column, this may be used for either variable or fixed-width columns. See the indata valarray version of this function for a complete description.

template<typename S >
void CCfits::Column::write ( S *  indata,
long  nElements,
const std::vector< long > &  vectorLengths,
long  firstRow 
)

write a C-array of values of size nElements into a vector column with specified number of entries written per row.

Intended for writing a varying number of elements to multiple rows in a vector column, this may be used for either variable or fixed-width columns. See the indata valarray version of this function for a complete description.

template<typename S >
void CCfits::Column::writeArrays ( const std::vector< std::valarray< S > > &  indata,
long  firstRow 
)

write a vector of valarray objects to the column, starting at row firstRow >= 1

Intended for writing a varying number of elements to multiple rows in a vector column, this may be used for either variable or fixed-width columns. When writing to fixed-width column rows, if the number of elements sent to a particular row are fewer than the column's repeat value, the remaining elements in the row will not be modified.

Parameters:
indataThe data to be written
firstRowthe first row to be written.
template<typename S >
void CCfits::Column::writeArrays ( const std::vector< std::valarray< S > > &  indata,
long  firstRow,
S *  nullValue 
)

write a vector of valarray objects to the column, starting at row firstRow >= 1, processing undefined values

see version without undefined processing for details.

double CCfits::Column::zero ( ) const [inline]

get TZEROn value

TZEROn is an integer offset used in the implementation of unsigned data

The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:53 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Column-members.html0000644000225700000360000004071311667502525021036 0ustar cagordonlhea CCfits: Member List
CCfits::Column Member List
This is the complete list of members for CCfits::Column, including all inherited members.
addNullValue(T nullVal)CCfits::Column
Column(const Column &right)CCfits::Column
Column(int columnIndex, const String &columnName, ValueType type, const String &format, const String &unit, Table *p, int rpt=1, long w=1, const String &comment="")CCfits::Column [protected]
Column(Table *p=0)CCfits::Column [protected]
comment() const CCfits::Column [inline, protected]
dimen() const CCfits::Column [inline]
display() const CCfits::Column [inline]
fitsPointer()CCfits::Column [protected]
format() const CCfits::Column [inline]
getNullValue(T *nullVal) const CCfits::Column
index() const CCfits::Column [inline]
isRead() const CCfits::Column [inline]
makeHDUCurrent()CCfits::Column [protected]
name() const CCfits::Column [inline]
parent() const CCfits::Column
put(std::ostream &s) const CCfits::Column [protected, virtual]
read(std::vector< S > &vals, long first, long last)CCfits::Column
read(std::valarray< S > &vals, long first, long last)CCfits::Column
read(std::valarray< S > &vals, long rows)CCfits::Column
read(std::vector< S > &vals, long first, long last, S *nullValue)CCfits::Column
read(std::valarray< S > &vals, long first, long last, S *nullValue)CCfits::Column
read(std::valarray< S > &vals, long rows, S *nullValue)CCfits::Column
readArrays(std::vector< std::valarray< S > > &vals, long first, long last)CCfits::Column
readArrays(std::vector< std::valarray< S > > &vals, long first, long last, S *nullValue)CCfits::Column
readData(long firstRow, long nelements, long firstElem=1)=0CCfits::Column [pure virtual]
repeat() const CCfits::Column [inline]
resetRead()CCfits::Column [inline]
rows() const CCfits::Column
scale() const CCfits::Column [inline]
setDimen()CCfits::Column [inline, virtual]
setDisplay()CCfits::Column
type() const CCfits::Column [inline]
unit() const CCfits::Column [inline]
varLength() const CCfits::Column [inline]
width() const CCfits::Column [inline]
write(const std::vector< S > &indata, long firstRow)CCfits::Column
write(const std::valarray< S > &indata, long firstRow)CCfits::Column
write(S *indata, long nRows, long firstRow)CCfits::Column
write(const std::vector< S > &indata, long firstRow, S *nullValue)CCfits::Column
write(const std::valarray< S > &indata, long firstRow, S *nullValue)CCfits::Column
write(S *indata, long nRows, long firstRow, S *nullValue)CCfits::Column
write(const std::valarray< S > &indata, long nRows, long firstRow)CCfits::Column
write(const std::vector< S > &indata, long nRows, long firstRow)CCfits::Column
write(S *indata, long nElements, long nRows, long firstRow)CCfits::Column
write(const std::valarray< S > &indata, long nRows, long firstRow, S *nullValue)CCfits::Column
write(const std::vector< S > &indata, long nRows, long firstRow, S *nullValue)CCfits::Column
write(S *indata, long nElements, long nRows, long firstRow, S *nullValue)CCfits::Column
write(const std::valarray< S > &indata, const std::vector< long > &vectorLengths, long firstRow)CCfits::Column
write(const std::vector< S > &indata, const std::vector< long > &vectorLengths, long firstRow)CCfits::Column
write(S *indata, long nElements, const std::vector< long > &vectorLengths, long firstRow)CCfits::Column
writeArrays(const std::vector< std::valarray< S > > &indata, long firstRow)CCfits::Column
writeArrays(const std::vector< std::valarray< S > > &indata, long firstRow, S *nullValue)CCfits::Column
zero() const CCfits::Column [inline]
~Column()CCfits::Column [virtual]
Generated on Tue Dec 6 2011 16:12:53 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Column_1_1InsufficientElements.html0000644000225700000360000001451111667505546024115 0ustar cagordonlhea CCfits: CCfits::Column::InsufficientElements Class Reference
Public Member Functions
CCfits::Column::InsufficientElements Class Reference

Exception thrown if the data supplied for a write operation is less than declared. More...

#include <Column.h>

Inheritance diagram for CCfits::Column::InsufficientElements:
Inheritance diagram CCfits::FitsException

List of all members.

Public Member Functions

 InsufficientElements (const String &msg, bool silent=true)
 Exception ctor, prefixes the string "FitsError: not enough elements supplied for write operation: " before the specific message.

Detailed Description

Exception thrown if the data supplied for a write operation is less than declared.

This circumstance generates an exception to avoid unexpected behaviour after the write operation is completed. It can be avoided by resizing the input array appropriately.

Constructor & Destructor Documentation

CCfits::Column::InsufficientElements::InsufficientElements ( const String &  msg,
bool  silent = true 
)

Exception ctor, prefixes the string "FitsError: not enough elements supplied for write operation: " before the specific message.

Parameters:
msgA specific diagnostic message, usually the column name
silentif true, print message whether FITS::verboseMode is set or not.
The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:53 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Column_1_1InsufficientElements.png0000644000225700000360000000115611667502525023730 0ustar cagordonlhea‰PNG  IHDRÓP´ý°PLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2ýIDATxíYŽÃ †ãTÊý<ã„6S2b~T Š ö/¼n¯õÆöÚW`˜f""2 ¢ö÷Œñ¶HêÞÙåá¢LŒ¡ÅÏ”,¼½ ôSp°Dƒ§æ’ˆ•DÓS9Y'ÚYø{©½˜jÌâO%SgOO^±í=ÍdëÉI¤ž|Ô aÀ}”)Ͻ&QÍB1I/ù›LY¹)I̽,\ó™ò¾J欞ÊÁzšÅÞ'íT¬-#á<;é{å­“½YLß÷&0éá&0éW™ÖÛ´qÌ3¦HÇzP 2ÇzP+2¡ï L`˜À&0 L`˜À&0 L`ú·L´ÞØh¹„˜Àô&"âu]p Ì¢W.¸2Ðk·Õ@O‘jO¾6bÚ­Œ¡Eàï½[Lbèô¤ñí}¦®Žm£2e ®b™uëÚê×ÿU¿Ü*‹dÅ6í÷Yý¬N·í35Wý/s¢ÔlõGüù6Ùv‘3–IteŒ)Æ)ºâþwÜ1»ym=uŒdN1¥¹÷6“νSë1Nš.Ó}3÷Â8Ât’{¡+¥¹çìôœ¼è{±Œ:â±Ü3Êýzê1]å^` ï“®Bý9Úó¥’*7gý«ç»Y•v 2L9‘é&¹·Ð˜À&0-Á´Þøƒb,þxÑ>ãIEND®B`‚CCfits/html/classCCfits_1_1Column_1_1InsufficientElements-members.html0000644000225700000360000000675011667502525025545 0ustar cagordonlhea CCfits: Member List
CCfits::Column::InsufficientElements Member List
This is the complete list of members for CCfits::Column::InsufficientElements, including all inherited members.
FitsException(const string &msg, bool &silent)CCfits::FitsException
InsufficientElements(const String &msg, bool silent=true)CCfits::Column::InsufficientElements
message() const CCfits::FitsException [inline]
Generated on Tue Dec 6 2011 16:12:53 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Column_1_1InvalidDataType.html0000644000225700000360000001416211667505546023016 0ustar cagordonlhea CCfits: CCfits::Column::InvalidDataType Class Reference
Public Member Functions
CCfits::Column::InvalidDataType Class Reference

Exception thrown for invalid data type inputs. More...

#include <Column.h>

Inheritance diagram for CCfits::Column::InvalidDataType:
Inheritance diagram CCfits::FitsException

List of all members.

Public Member Functions

 InvalidDataType (const String &str=string(), bool silent=true)
 Exception ctor, prefixes the string "FitsError: Incorrect data type: " before the specific message.

Detailed Description

Exception thrown for invalid data type inputs.

This exception is thrown if the user requests an implicit data type conversion to a datatype that is not one of the supported types (see fitsio.h for details).

Constructor & Destructor Documentation

CCfits::Column::InvalidDataType::InvalidDataType ( const String &  str = string(),
bool  silent = true 
)

Exception ctor, prefixes the string "FitsError: Incorrect data type: " before the specific message.

Parameters:
strA specific diagnostic message
silentif true, print message whether FITS::verboseMode is set or not.
The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:53 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Column_1_1InvalidDataType.png0000644000225700000360000000114311667502525022623 0ustar cagordonlhea‰PNG  IHDR¿P&TcPLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2òIDATxíÑ’Ã E%Éÿò>€‚€©éÖî:½NvcEå òZ{·ò8vnà?ø§Q×!:è8x¬›E<Ü,uìjó°Ñ»ùÙtÄŸçOºd/Áßá0rÊüR÷Íl,6R’•õEO#>3¶˜¿ÞE|Œ cöå'êØ'ù{ý;KÓ¿¿.šÚÇøsý¨Å$²áoyþ÷üYzKÔOv kùóú$~¥Y8¡ÿü¡þ[€˜ …µrQä[ÒÆVð¯i¯~ðƒÿ üàÿrþ½[YÜÎÕÀ‰îÀæüç¹w»ó£þ€üà?øÁ~ðƒüà?øÁ~ðƒÿËùiïVhëë?øÁß Q×áäñµy²Á3Ãq1‘ÔÀlQ-2üŒl:º}ÒÁ_ð»H‡rí ñkÈz)$¯Œ—ÏE¼óÜÚïçËïö×­3wÜŒúÏkÝY¯d̯kü“˜Y•Æ/é§ùm-ØÔñ;Û<"ÍÀ\(+yorÆ^ª!ö[ü©~nóW_œþfÔ*v±é>ÇÿüzæùýìÎÇH?aídý‰²˜gø½œþCp ÿXÿ±þÛœ±ëçA+Jvþ1ž¶½©U’ñÆ·Tîù\ÖŸÿÿ¡M¿»ð»,Üß™íÎøÁÿÕü{·¬ë(¼»È9IEND®B`‚CCfits/html/classCCfits_1_1Column_1_1InvalidDataType-members.html0000644000225700000360000000670411667502525024443 0ustar cagordonlhea CCfits: Member List
CCfits::Column::InvalidDataType Member List
This is the complete list of members for CCfits::Column::InvalidDataType, including all inherited members.
FitsException(const string &msg, bool &silent)CCfits::FitsException
InvalidDataType(const String &str=string(), bool silent=true)CCfits::Column::InvalidDataType
message() const CCfits::FitsException [inline]
Generated on Tue Dec 6 2011 16:12:53 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Column_1_1InvalidNumberOfRows.html0000644000225700000360000001411011667505546023664 0ustar cagordonlhea CCfits: CCfits::Column::InvalidNumberOfRows Class Reference
Public Member Functions
CCfits::Column::InvalidNumberOfRows Class Reference

Exception thrown if user enters a non-positive number for the number of rows to write. More...

#include <Column.h>

Inheritance diagram for CCfits::Column::InvalidNumberOfRows:
Inheritance diagram CCfits::FitsException

List of all members.

Public Member Functions

 InvalidNumberOfRows (size_t number, bool silent=true)
 Exception ctor, prefixes the string "Fits Error: number of rows to write must be positive " before the specific message.

Detailed Description

Exception thrown if user enters a non-positive number for the number of rows to write.

Constructor & Destructor Documentation

CCfits::Column::InvalidNumberOfRows::InvalidNumberOfRows ( size_t  number,
bool  silent = true 
)

Exception ctor, prefixes the string "Fits Error: number of rows to write must be positive " before the specific message.

Parameters:
numberThe number of rows entered.
silentif true, print message whether FITS::verboseMode is set or not.
The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:54 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Column_1_1NoNullValue.html0000644000225700000360000001436311667505546022203 0ustar cagordonlhea CCfits: CCfits::Column::NoNullValue Class Reference
Public Member Functions
CCfits::Column::NoNullValue Class Reference

Exception thrown if a null value is specified without support from existing column header. More...

#include <Column.h>

Inheritance diagram for CCfits::Column::NoNullValue:
Inheritance diagram CCfits::FitsException

List of all members.

Public Member Functions

 NoNullValue (const String &diag, bool silent=true)
 Exception ctor, prefixes the string "Fits Error: No null value specified for column: " before the specific message.

Detailed Description

Exception thrown if a null value is specified without support from existing column header.

This exception is analogous to the fact that cfitsio returns a non-zero status code if TNULLn doesn't exist an a null value (convert all input data with the null value to the TNULLn keyword) is specified. It is only relevant for integer type data (see cfitsio manual for details).

Constructor & Destructor Documentation

CCfits::Column::NoNullValue::NoNullValue ( const String &  diag,
bool  silent = true 
)

Exception ctor, prefixes the string "Fits Error: No null value specified for column: " before the specific message.

Parameters:
diagA specific diagnostic message
silentif true, print message whether FITS::verboseMode is set or not.
The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:54 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FITS.html0000644000225700000360000027364311667502527016732 0ustar cagordonlhea CCfits: CCfits::FITS Class Reference
Classes | Public Member Functions | Static Public Member Functions
CCfits::FITS Class Reference

Memory object representation of a disk FITS file. More...

#include <FITS.h>

List of all members.

Classes

class  CantCreate
 thrown on failure to create new file More...
class  CantOpen
 thrown on failure to open existing file More...
class  NoSuchHDU
 exception thrown by HDU retrieval methods. More...
class  OperationNotSupported
 thrown for unsupported operations, such as attempted to select rows from an image extension. More...

Public Member Functions

 FITS (const String &name, RWmode mode=Read, bool readDataFlag=false, const std::vector< String > &primaryKeys=std::vector< String >())
 basic constructor
 FITS (const String &name, RWmode mode, const string &hduName, bool readDataFlag=false, const std::vector< String > &hduKeys=std::vector< String >(), const std::vector< String > &primaryKey=std::vector< String >(), int version=1)
 Open a FITS file and read a single specified HDU.
 FITS (const String &name, RWmode mode, const std::vector< String > &hduNames, bool readDataFlag=false, const std::vector< String > &primaryKey=std::vector< String >())
 FITS (const String &fileName, const FITS &source)
 create a new FITS object and corresponding file with copy of the primary header of the source If the filename corresponds to an existing file and does not start with the '!' character the construction will fail with a CantCreate exception.
 FITS (const String &name, RWmode mode, const std::vector< String > &hduNames, const std::vector< std::vector< String > > &hduKeys, bool readDataFlag=false, const std::vector< String > &primaryKeys=std::vector< String >(), const std::vector< int > &hduVersions=std::vector< int >())
 FITS read constructor in full generality.
 FITS (const String &name, int bitpix, int naxis, long *naxes)
 Constructor for creating new FITS objects containing images.
 FITS (const string &name, RWmode mode, int hduIndex, bool readDataFlag=false, const std::vector< String > &hduKeys=std::vector< String >(), const std::vector< String > &primaryKey=std::vector< String >())
 read a single numbered HDU.
 FITS (const String &name, RWmode mode, const std::vector< String > &searchKeys, const std::vector< String > &searchValues, bool readDataFlag=false, const std::vector< String > &hduKeys=std::vector< String >(), const std::vector< String > &primaryKey=std::vector< string >(), int version=1)
 open fits file and read HDU which contains supplied keywords with [optional] specified values (sometimes one just wants to know that the keyword is present).
 ~FITS ()
 destructor
ExtHDU * addImage (const String &hduName, int bpix, std::vector< long > &naxes, int version=1)
 Add an image extension to an existing FITS object. (File with w or rw access).
Table * addTable (const String &hduName, int rows, const std::vector< String > &columnName=std::vector< String >(), const std::vector< String > &columnFmt=std::vector< String >(), const std::vector< String > &columnUnit=std::vector< String >(), HduType type=BinaryTbl, int version=1)
 Add a table extension to an existing FITS object. Add extension to FITS object for file with w or rw access.
void copy (const HDU &source)
 copy the HDU source into the FITS object.
ExtHDU & currentExtension ()
 return a non-const reference to whichever is the current extension.
const String & currentExtensionName () const
 return the name of the extension that the fitsfile is currently addressing.
void deleteExtension (const String &doomed, int version=1)
 Delete extension specified by name and version number.
void deleteExtension (int doomed)
 Delete extension specified by extension number.
void destroy () throw ()
 Erase FITS object and close corresponding file.
const ExtHDU & extension (int i) const
 return FITS extension by index number. N.B. The input index number is currently defined as enumerating extensions, so the extension(1) returns HDU number 2.
ExtHDU & extension (int i)
 return FITS extension by index number. non-const version. see const version for details.
const ExtHDU & extension (const String &hduName, int version=1) const
 return FITS extension by name and (optionally) version number.
ExtHDU & extension (const String &hduName, int version=1)
 return FITS extension by name and (optionally) version number.
const ExtMap & extension () const
 return const reference to the extension container
Table & filter (const String &expression, ExtHDU &inputTable, bool overwrite=true, bool readData=false)
 Filter the rows of the inputTable with the condition expression, and return a reference to the resulting Table.
fitsfile * fitsPointer () const
 return the CFITSIO fitsfile pointer for this FITS object
void flush ()
 flush buffer contents to disk
int getCompressionType () const
 Get the int specifying the compression algorithm to be used when adding an image extension.
int getNoiseBits () const
 Get the cfitsio noisebits parameter used when compressing floating-point images.
void getTileDimensions (std::vector< long > &tileSizes) const
 Get the current settings of dimension sizes for tiles used in image compression.
const String & name () const
 return filename of file corresponding to FITS object
const PHDU & pHDU () const
 return a const reference to the primary HDU.
PHDU & pHDU ()
 return a reference to the primary HDU.
void read (const String &hduName, bool readDataFlag=false, const std::vector< String > &keys=std::vector< String >(), int version=1)
 get data from single HDU from disk file.
void read (const std::vector< String > &hduNames, bool readDataFlag=false)
 get data from a set of HDUs from disk file.
void read (const std::vector< String > &hduNames, const std::vector< std::vector< String > > &keys, bool readDataFlag=false, const std::vector< int > &hduVersions=std::vector< int >())
 get data from a set of HDUs from disk file, specifying keys and version numbers.
void read (int hduIndex, bool readDataFlag=false, const std::vector< String > &keys=std::vector< String >())
 read an HDU specified by index number.
void read (const std::vector< String > &searchKeys, const std::vector< String > &searchValues, bool readDataFlag=false, const std::vector< String > &hduKeys=std::vector< String >(), int version=1)
 read method for read header or HDU that contains specified keywords.
void resetPosition ()
 explicit call to set the fits file pointer to the primary.
void setCompressionType (int compType)
 set the compression algorithm to be used when adding image extensions to the FITS object.
void setNoiseBits (int noiseBits)
 Set the cfitsio noisebits parameter used when compressing floating-point images.
void setTileDimensions (const std::vector< long > &tileSizes)
 Set the dimensions of the tiles into which the image is divided during compression.

Static Public Member Functions

static void clearErrors ()
 clear the error stack and set status to zero.
static void setVerboseMode (bool value)
 set verbose setting for library
static bool verboseMode ()
 return verbose setting for library

Detailed Description

Memory object representation of a disk FITS file.

Constructors are provided to get FITS data from an existing file or to create new FITS data sets. Overloaded versions allow the user to

a) read from one or more specified extensions, specified by EXTNAME and VERSION or by HDU number. b either just header information or data on construction c) to specify scalar keyword values to be read on construction d) to open and read an extension that has specified keyword values e) create a new FITS object and corresponding file, including an empty primary header.

The memory fits object as constructed is always an image of a valid FITS object, i.e. a primary HDU is created on construction.

calling the destructor closes the disk file, so that FITS files are automatically deleted at the end of scope unless other arrangements are made.

Constructor & Destructor Documentation

CCfits::FITS::FITS ( const String &  name,
RWmode  mode = Read,
bool  readDataFlag = false,
const std::vector< String > &  primaryKeys = std::vector<String>() 
)

basic constructor

This basic constructor makes a FITS object from the given filename. The file name is the only required argument. The file name string is passed directly to the cfitsio library: thus the extended file name syntax described in the cfitsio manual should work as documented. (Though the extended file name feature which allows the opening of a particular image located in the row of a table is currently unsupported.)

If the mode is Read [default]: It will read all of the headers in the file, and all of the data if the readDataFlag is supplied as true. It will also read optional primary keys. Upon completion, the the last header in the file will become the current extension. (However if the file name includes extended syntax selecting a particular extension, that extension will be the current one.)

If the mode is Write and the file already exists: The file is opened in read-write mode, all of the headers of the file are read, and all of the data if the readDataFlag is supplied as true. It will also read optional primary keys. For backwards compatibility with older versions of CCfits (which only read the primary when in Write mode for pre-existing files), the primary will become the current extension.

If the mode is Write and the file does NOT exist (or is overwritten using '!' syntax): A default primary HDU will be created in the file with BITPIX=8 and NAXIS=0. However if you wish to create a new file with image data in the primary, the version of the FITS constructor that specifies the data type and number of axes should be used instead.

Parameters:
nameThe name of the FITS file to be read/written
modeThe read/write mode: must be Read or Write
readDataFlagboolean: read data on construction if true
primaryKeysAllows optional reading of primary header keys on construction
Exceptions:
NoSuchHDUthrown on HDU seek error either by index or {name,version}
FitsErrorthrown on non-zero status code from cfitsio when not overriden by FitsException error to produce more illuminating message.
CCfits::FITS::FITS ( const String &  name,
RWmode  mode,
const string &  hduName,
bool  readDataFlag = false,
const std::vector< String > &  hduKeys = std::vector<String>(),
const std::vector< String > &  primaryKey = std::vector<String>(),
int  version = 1 
)

Open a FITS file and read a single specified HDU.

This and similar constructor variants support reading table data.

Optional arguments allow the reading of primary header keys and specified data from hduName, the HDU to be read. An object representing the primary HDU is always created: if it contains an image, that image may be read by subsequent calls.

If extended file name syntax is used and selects an extension other than hduName, a FITS::OperationNotSupported exception will be thrown.

Parameters:
nameThe name of the FITS file to be read
modeThe read/write mode: takes values Read or Write
hduNameThe name of the HDU to be read.
hduKeysOptional array of keywords to be read from the HDU
versionOptional version number. If not supplied the first HDU with name hduName is read see above for other parameter definitions
CCfits::FITS::FITS ( const String &  name,
RWmode  mode,
const std::vector< String > &  hduNames,
bool  readDataFlag = false,
const std::vector< String > &  primaryKey = std::vector<String>() 
)

This is intended as a convenience where the file consists of single versions of HDUs and data only, not keys are to be read.

If extended file name syntax is used and selects an extension not listed in hduNames, a FITS::OperationNotSupported exception will be thrown.

Parameters:
hduNamesarray of HDU names to be read.

see above for other parameter definitions.

CCfits::FITS::FITS ( const String &  fileName,
const FITS &  source 
)

create a new FITS object and corresponding file with copy of the primary header of the source If the filename corresponds to an existing file and does not start with the '!' character the construction will fail with a CantCreate exception.

Parameters:
fileNameNew file to be created.
sourceA previously created FITS object to be copied.

see above for other parameter definitions.

CCfits::FITS::FITS ( const String &  name,
RWmode  mode,
const std::vector< String > &  hduNames,
const std::vector< std::vector< String > > &  hduKeys,
bool  readDataFlag = false,
const std::vector< String > &  primaryKeys = std::vector<String>(),
const std::vector< int > &  hduVersions = std::vector<int>() 
)

FITS read constructor in full generality.

Parameters:
hduVersionsan optional version number for each HDU to be read
hduKeysan array of keywords for each HDU to be read. see above for other parameter definitions.
CCfits::FITS::FITS ( const String &  name,
int  bitpix,
int  naxis,
long *  naxes 
)

Constructor for creating new FITS objects containing images.

This constructor is only called for creating new files (mode is not an argument) and creates a new primary HDU with the datatype & axes specified by bitpix, naxis, and naxes. The data are added to the new fits object and file by subsequent calls to FITS::pHDU().write( <arguments> )

A file with a compressed image may be creating by appending to the end of the file name the same "[compress ...]" syntax specified in the cfitsio manual. Note however that the compressed image will be placed in the first extension and NOT in the primary HDU.

If the filename corresponds to an existing file and does not start with the '!' character the construction will fail with a CantCreate exception.

The arguments are:

Parameters:
nameThe file to be written to disk
bitpixthe datatype of the primary image. bitpix may be one of the following CFITSIO constants: BYTE_IMG, SHORT_IMG, LONG_IMG, FLOAT_IMG, DOUBLE_IMG, USHORT_IMG, ULONG_IMG. Note that if you send in a bitpix of USHORT_IMG or ULONG_IMG, CCfits will set HDU::bitpix() to its signed equivalent (SHORT_IMG or LONG_IMG), and then set BZERO to 2^15 or 2^31.
naxisthe data dimension of the primary image
naxesthe array of axis lengths for the primary image. Ignored if naxis =0, i.e. the primary header is empty. extensions can be added arbitrarily to the file after this constructor is called. The constructors should write header information to disk:
CCfits::FITS::FITS ( const string &  name,
RWmode  mode,
int  hduIndex,
bool  readDataFlag = false,
const std::vector< String > &  hduKeys = std::vector<String>(),
const std::vector< String > &  primaryKey = std::vector<String>() 
)

read a single numbered HDU.

Constructor analogous to the version that reads by name. This is required since HDU extensions are not required to have the EXTNAME or HDUNAME keyword by the standard. If there is no name, a dummy name based on the HDU number is created and becomes the key.

If extended file name syntax is used and selects an extension other than hduIndex, a FITS::OperationNotSupported exception will be thrown.

Parameters:
hduIndexThe index of the HDU to be read. see above for other parameter definitions.
CCfits::FITS::FITS ( const String &  name,
RWmode  mode,
const std::vector< String > &  searchKeys,
const std::vector< String > &  searchValues,
bool  readDataFlag = false,
const std::vector< String > &  hduKeys = std::vector<String>(),
const std::vector< String > &  primaryKey = std::vector<string>(),
int  version = 1 
)

open fits file and read HDU which contains supplied keywords with [optional] specified values (sometimes one just wants to know that the keyword is present).

Optional parameters allows the reading of specified primary HDU keys and specified columns and keywords in the HDU of interest.

Parameters:
nameThe name of the FITS file to be read
modeThe read/write mode: must be Read or Write
searchKeysA string vector of keywords to search for in each header
searchValuesA string vector of values those keywords are required to have for success. Note that the keys must be of type string. If any value does not need to be checked the corresponding searchValue element can be empty.
readDataFlagboolean: if true, read data if HDU is found
hduKeysAllows optional reading of keys in the HDU that is searched for if it is successfully found
primaryKeyAllows optional reading of primary header keys on construction
versionOptional version number. If specified, checks the EXTVERS keyword.
Exceptions:
FitsErrorthrown on non-zero status code from cfitsio when not overriden by FitsException error to produce more illuminating message.

Member Function Documentation

void CCfits::FITS::addImage ( const String &  hduName,
int  bpix,
std::vector< long > &  naxes,
int  version = 1 
)

Add an image extension to an existing FITS object. (File with w or rw access).

Does not make primary images, which are built in the constructor for the FITS file. The image data is not added here: it can be added by a call to one of the ExtHDU::write functions.

bpix may be one of the following CFITSIO constants: BYTE_IMG, SHORT_IMG, LONG_IMG, FLOAT_IMG, DOUBLE_IMG, USHORT_IMG, ULONG_IMG. Note that if you send in a bpix of USHORT_IMG or ULONG_IMG, CCfits will set HDU::bitpix() to its signed equivalent (SHORT_IMG or LONG_IMG), and then set BZERO to 2^15 or 2^31.

Todo:
Add a function for replacing the primary image
Table * CCfits::FITS::addTable ( const String &  hduName,
int  rows,
const std::vector< String > &  columnName = std::vector<String>(),
const std::vector< String > &  columnFmt = std::vector<String>(),
const std::vector< String > &  columnUnit = std::vector<String>(),
HduType  type = BinaryTbl,
int  version = 1 
)

Add a table extension to an existing FITS object. Add extension to FITS object for file with w or rw access.

Parameters:
rowsThe number of rows in the table to be created.
columnNameA vector containing the table column names
columnFmtA vector containing the table column formats
columnUnit(Optional) a vector giving the units of the columns.
typeThe table type - AsciiTbl or BinaryTbl (defaults to BinaryTbl) the lists of columns are optional - one can create an empty table extension but if supplied, colType, columnName and colFmt must have equal dimensions.
Todo:
the code should one day check that the version keyword is higher than any other versions already added to the FITS object (although cfitsio doesn't do this either).
void CCfits::FITS::copy ( const HDU &  source)

copy the HDU source into the FITS object.

This function adds a copy of an HDU from another file into *this. It does not create a duplicate of an HDU in the file associated with *this.

const String & CCfits::FITS::currentExtensionName ( ) const

return the name of the extension that the fitsfile is currently addressing.

If the extension in question does not have an EXTNAME or HDUNAME keyword, then the function returns $HDU$n, where n is the sequential HDU index number (primary HDU = 0).

void CCfits::FITS::deleteExtension ( const String &  doomed,
int  version = 1 
)

Delete extension specified by name and version number.

Removes extension from FITS object and memory copy. The index numbers of all HDU objects which follow this in the file will be decremented by 1.

Parameters:
doomedthe name of the extension to be deleted
versionan optional version number, the EXTVER keyword, defaults to 1
Exceptions:
NoSuchHDUThrown if there is no extension with the specified version number
FitsErrorThrown if there is a non-zero status code from cfitsio, e.g. if the delete operation is applied to a FITS file opened for read only access.
void CCfits::FITS::deleteExtension ( int  doomed)

Delete extension specified by extension number.

The index numbers of all HDU objects which follow this in the file will be decremented by 1.

void CCfits::FITS::destroy ( ) throw ()

Erase FITS object and close corresponding file.

Force deallocation and erase of elements of a FITS memory object. Allows a reset of everything inside the FITS object, and closes the file. The object is inaccessible after this call.

destroy is public to allow users to reuse a symbol for a new file, but it is identical in operation to the destructor.

const std::multimap< std::String, ExtHDU * > & CCfits::FITS::extension ( ) const

return const reference to the extension container

This is useful for such operations as extension().size() etc.

Table & CCfits::FITS::filter ( const String &  expression,
ExtHDU &  inputTable,
bool  overwrite = true,
bool  readData = false 
)

Filter the rows of the inputTable with the condition expression, and return a reference to the resulting Table.

This function provides an object oriented version of cfitsio's fits_select_rows call. The expression string is any boolean expression involving the names of the columns in the input table (e.g., if there were a column called "density", a valid expression might be "DENSITY > 3.5": see the cfitsio documentation for further details).

[N.B. the "append" functionality described below does not work when linked with cfitsio 2.202 or prior because of a known issue with that version of the library. This causes the output to be a new extension with a correct header copy and version number but without the filtered data]. If the inputTable is an Extension HDU of this FITS object, then if overwrite is true the operation will overwrite the inputTable with the filtered version, otherwise it will append a new HDU with the same extension name but the next highest version (EXTVER) number available.

void CCfits::FITS::flush ( )

flush buffer contents to disk

Provides manual control of disk writing operation. Image data are flushed automatically to disk after the write operation is completed, but not column data.

void CCfits::FITS::getTileDimensions ( std::vector< long > &  tileSizes) const

Get the current settings of dimension sizes for tiles used in image compression.

Parameters:
tileSizesA vector to be filled with cfitsio's current tile dimension settings. CCfits will resize this vector to contain the proper number of values.
void CCfits::FITS::read ( const String &  hduName,
bool  readDataFlag = false,
const std::vector< String > &  keys = std::vector<String>(),
int  version = 1 
)

get data from single HDU from disk file.

This is provided to allow the adding of additional HDUs to the FITS object after construction of the FITS object. After the read() functions have been called for the FITS object, subsequent read method to the Primary, ExtHDU, and Column objects will retrieve data from the FITS object in memory (those methods can be called to read data in those HDU objects that was not read when the HDU objects were constructed.

All the read functions will throw NoSuchHDU exceptions on seek errors since they involve constructing HDU objects.

The parameter definitions are as documented for the corresponding constructor.

void CCfits::FITS::read ( const std::vector< String > &  hduNames,
bool  readDataFlag = false 
)

get data from a set of HDUs from disk file.

This is provided to allow reading of HDUs after construction. see above for parameter definitions.

void CCfits::FITS::read ( const std::vector< String > &  hduNames,
const std::vector< std::vector< String > > &  keys,
bool  readDataFlag = false,
const std::vector< int > &  hduVersions = std::vector<int>() 
)

get data from a set of HDUs from disk file, specifying keys and version numbers.

This is provided to allow reading of HDUs after construction. see above for parameter definitions.

void CCfits::FITS::read ( int  hduIndex,
bool  readDataFlag = false,
const std::vector< String > &  keys = std::vector<String>() 
)

read an HDU specified by index number.

This is provided to allow reading of HDUs after construction. see above for parameter definitions.

CCfits::FITS::read ( const std::vector< String > &  searchKeys,
const std::vector< String > &  searchValues,
bool  readDataFlag = false,
const std::vector< String > &  hduKeys = std::vector<String>(),
int  version = 1 
)

read method for read header or HDU that contains specified keywords.

Parameters:
searchKeysA string vector of keywords to search for in each header
searchValuesA string vector of values those keywords are required to have for success. Note that the keys must be of type string. If any value does not need to be checked the corresponding searchValue element can be empty.
readDataFlagboolean: if true, read data if HDU is found
hduKeysAllows optional reading of keys in the HDU that is searched for if it is successfully found
versionOptional version number. If specified, checks the EXTVERS keyword.
void CCfits::FITS::setCompressionType ( int  compType)

set the compression algorithm to be used when adding image extensions to the FITS object.

Parameters:
compTypeCurrently 3 symbolic constants are defined in cfitsio for specifying compression algorithms: GZIP_1, RICE_1, and PLIO_1. See the cfitsio documentation for more information about these algorithms. Entering NULL for compType will turn off compression and cause normal FITS images to be written.
void CCfits::FITS::setNoiseBits ( int  noiseBits)

Set the cfitsio noisebits parameter used when compressing floating-point images.

The default value is 4. Decreasing the value of noisebits will improve the overall compression efficiency at the expense of losing more information.

void CCfits::FITS::setTileDimensions ( const std::vector< long > &  tileSizes)

Set the dimensions of the tiles into which the image is divided during compression.

Parameters:
tileSizesA vector of length N containing the tile dimesions. If N is less than the number of dimensions of the image it is applied to, the unspecified dimensions will be assigned a size of 1 pixel. If N is larger than the number of image dimensions, the extra dimensions will be ignored.

The default cfitsio behavior is to create tiles with dimensions NAXIS1 x 1 x 1 etc. up to the number of image dimensions.

bool CCfits::FITS::verboseMode ( ) [inline, static]

return verbose setting for library

If true, all messages that are reported by exceptions are printed to std::cerr.

The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:55 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Column_1_1InvalidNumberOfRows.png0000644000225700000360000000120111667502525023473 0ustar cagordonlhea‰PNG  IHDRáPØûâ˜PLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2IDATxíÛ„ †£éýy/@ådÙì¡r~fw2äC¤Ûå5»,¯un!AølB""3 Zi]YgV«ëLÑí9ŽþOÈPj yÂd8ûwð>" áÊIñ£X§ÕŒÎ‰eyÐÊˈ³§t—–óŒ?Uv~ø…Mw/B{ÝL½‡þD o€¿a^¥mFµEX;Ò³kªfb•fGy5aÞKÃUÛ»‡b8p¯! ßCb¼“f†+r§—Ê·µê®!ü|íCB>F@BÞ‚pvYþ-Ûßwá··Ù§'ܶÙç'D/!AB‚„ !AB‚„ !ABþNhvYhòš!Ax+B"âqp ¨ëÄÁÑ]½LÕQ²4µVò—`¡Ô 7mÊ«sºkmí&„í([¦–…ä‘qò$¼¶Œízy¯c'V®JUéx%@íUmSCèªMÝ/™Ÿ¯7±Ë¼ÛŒ0º*ùpµ­ ®zi:AÏ0ºw‰Rû¥ï¶.U Ô’ÈbŒ0­ÒÓ„e/Ž)!Ø!´Áo4 CCfits: Member List
CCfits::Column::InvalidNumberOfRows Member List
This is the complete list of members for CCfits::Column::InvalidNumberOfRows, including all inherited members.
FitsException(const string &msg, bool &silent)CCfits::FitsException
InvalidNumberOfRows(size_t number, bool silent=true)CCfits::Column::InvalidNumberOfRows
message() const CCfits::FitsException [inline]
Generated on Tue Dec 6 2011 16:12:54 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Column_1_1InvalidRowNumber.html0000644000225700000360000001403611667505546023223 0ustar cagordonlhea CCfits: CCfits::Column::InvalidRowNumber Class Reference
Public Member Functions
CCfits::Column::InvalidRowNumber Class Reference

Exception thrown on attempting to read a row number beyond the end of a table. More...

#include <Column.h>

Inheritance diagram for CCfits::Column::InvalidRowNumber:
Inheritance diagram CCfits::FitsException

List of all members.

Public Member Functions

 InvalidRowNumber (const String &diag, bool silent=true)
 Exception ctor, prefixes the string "FitsError: Invalid Row Number - Column: " before the specific message.

Detailed Description

Exception thrown on attempting to read a row number beyond the end of a table.

Constructor & Destructor Documentation

CCfits::Column::InvalidRowNumber::InvalidRowNumber ( const String &  diag,
bool  silent = true 
)

Exception ctor, prefixes the string "FitsError: Invalid Row Number - Column: " before the specific message.

Parameters:
diagA specific diagnostic message, usually the column name.
silentif true, print message whether FITS::verboseMode is set or not.
The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:54 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Column_1_1InvalidRowNumber.png0000644000225700000360000000115111667502526023030 0ustar cagordonlhea‰PNG  IHDRÍPšÆPLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2øIDATxíÛà †K—ôýyˆ"ëÖ´[ÌOºÔ>9ôv{­$Ûk_G@ÐMfÚÇ4r{žzåwШ[˜§9Ý<­ëF•‡.‘alºZ÷4_.‰y†¦;bP7&ƒdï¼÷½i•W{’ÊÕ›Zc:‰UÝ^]xÐÓ¬—ᦧ9š4  h@óÇ4+ɳU+±º­tûIEND®B`‚CCfits/html/classCCfits_1_1Column_1_1InvalidRowNumber-members.html0000644000225700000360000000670511667502526024652 0ustar cagordonlhea CCfits: Member List
CCfits::Column::InvalidRowNumber Member List
This is the complete list of members for CCfits::Column::InvalidRowNumber, including all inherited members.
FitsException(const string &msg, bool &silent)CCfits::FitsException
InvalidRowNumber(const String &diag, bool silent=true)CCfits::Column::InvalidRowNumber
message() const CCfits::FitsException [inline]
Generated on Tue Dec 6 2011 16:12:54 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Column_1_1InvalidRowParameter.html0000644000225700000360000001452211667505546023713 0ustar cagordonlhea CCfits: CCfits::Column::InvalidRowParameter Class Reference
Public Member Functions
CCfits::Column::InvalidRowParameter Class Reference

Exception thrown on incorrect row writing request. More...

#include <Column.h>

Inheritance diagram for CCfits::Column::InvalidRowParameter:
Inheritance diagram CCfits::FitsException

List of all members.

Public Member Functions

 InvalidRowParameter (const String &diag, bool silent=true)
 Exception ctor, prefixes the string "FitsError: row offset or length incompatible with column declaration " before the specific message.

Detailed Description

Exception thrown on incorrect row writing request.

This exception is thrown if the user requests writing more data than a fixed width row can accommodate. An exception is thrown rather than a truncation because it is likely that the user will not otherwise realize that data loss is happening.

Constructor & Destructor Documentation

CCfits::Column::InvalidRowParameter::InvalidRowParameter ( const String &  diag,
bool  silent = true 
)

Exception ctor, prefixes the string "FitsError: row offset or length incompatible with column declaration " before the specific message.

Parameters:
diagA specific diagnostic message, usually the column name
silentif true, print message whether FITS::verboseMode is set or not.
The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:54 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Column_1_1InvalidRowParameter.png0000644000225700000360000000120011667502526023513 0ustar cagordonlhea‰PNG  IHDRÛP§*ðiPLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2IDATxíÝr„0…Åñý¹$ü«ÙÖº6=wÌ | àíòšw,¯uÖ6°í°¹ ÑJëÊ2gE,M—mž6º“q̤ÅÙŠé@Ô€}Ÿ-Ún‡_š¨Æžµ•ýE+›Ÿ›‘}­ßa~L’íÈì+ªì)l¾Þ‚Fê-Þ¢#MØ`«sR5¦©6é9Ïf«ÊÑhrNV×÷9¶ºO¦’:ª·¶p ÞîfKß7\®=§áü;è“í[)²»Ù~g\óaØ:À6°ÝÊ6ïXnÛ½îÀvÚ6/ÜÄlÛ6/ÜÌlè“`ØÀ6° l`ØÀ6° l`ØÀ6Í;š6IÀ6°}„ˆxÞ'Üh»Øµ ÎìÊ›ŠZ¯ÞëᣠlŒc&ê:o¢Â°Ê2ºçlz}zfËBíU±ð‘¶ÈضϽ}û/?·NsCtjìåÝE[/ë8BÑÓ>›†ŸBÍ>{¤q‰7‹Û6%òlz,…·‡œì([¾·Ì}ØŒóâhÚë*sk½Ù] oî¾ß`+sòm6¹‡žx»ÚÉö¯j}ã'4Îv~­ãlÑÚÖ›©\×£{Ŭúd>Áõ›sqPoUv³ädþ¾iÑJŸ39aúõÉ=Êö¦§}2GÙÖh_4{¶O&¶éØÀ6°í_³Í;¾ˆ·.«lúL&IEND®B`‚CCfits/html/classCCfits_1_1Column_1_1InvalidRowParameter-members.html0000644000225700000360000000674011667502526025341 0ustar cagordonlhea CCfits: Member List
CCfits::Column::InvalidRowParameter Member List
This is the complete list of members for CCfits::Column::InvalidRowParameter, including all inherited members.
FitsException(const string &msg, bool &silent)CCfits::FitsException
InvalidRowParameter(const String &diag, bool silent=true)CCfits::Column::InvalidRowParameter
message() const CCfits::FitsException [inline]
Generated on Tue Dec 6 2011 16:12:54 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Column_1_1NoNullValue.png0000644000225700000360000000106711667502526022013 0ustar cagordonlhea‰PNG  IHDR«PQcuñPLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2ÆIDATxíÑŽÄ E¥“ôÿ?y@ÁÖnÛM˜½¦‰Ž ñʼ–OžV>[–V°~+‘m´m CCfits: Member List
CCfits::Column::NoNullValue Member List
This is the complete list of members for CCfits::Column::NoNullValue, including all inherited members.
FitsException(const string &msg, bool &silent)CCfits::FitsException
message() const CCfits::FitsException [inline]
NoNullValue(const String &diag, bool silent=true)CCfits::Column::NoNullValue
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CCfits/html/classCCfits_1_1Column_1_1RangeError.html0000644000225700000360000001411211667505546022035 0ustar cagordonlhea CCfits: CCfits::Column::RangeError Class Reference
Public Member Functions
CCfits::Column::RangeError Class Reference
FITS Exceptions

exception to be thrown for inputs that cause range errors in column read operations. More...

#include <Column.h>

Inheritance diagram for CCfits::Column::RangeError:
Inheritance diagram CCfits::FitsException

List of all members.

Public Member Functions

 RangeError (const String &msg, bool silent=true)
 Exception ctor, prefixes the string "FitsError: Range error in operation " before the specific message.

Detailed Description

exception to be thrown for inputs that cause range errors in column read operations.

Range errors here mean (last < first) in a request to read a range of rows.

Constructor & Destructor Documentation

CCfits::Column::RangeError::RangeError ( const String &  msg,
bool  silent = true 
)

Exception ctor, prefixes the string "FitsError: Range error in operation " before the specific message.

Parameters:
msgA specific diagnostic message
silentif true, print message whether FITS::verboseMode is set or not.
The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:54 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Column_1_1RangeError.png0000644000225700000360000000110411667502526021645 0ustar cagordonlhea‰PNG  IHDR¦P¤þAPLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2ÓIDATxíÑ’Ã E%Éÿò>€ŠBÒ&Û°{LµBàˆWóZ^)Zy- 0™“ˆh-´,<7xO7KÛ n½‰Édj agLg3`šœR3îz–fV½ ’7kG »—@Í]ƒY+kµ‹sº›ûÜ ˜£6'KÓæ\ÛÚ¬àjLÓ»E%…ÙŽÚ¯azÒU»é^Q/ÁôOº‘ßž6åÅ€6?À4÷¦Îcu:XxƒwNºÜÁmîÌ{Ú™ ˜óL`>3E+7´õŽ ÿs]SpæÀ\לI0qÒ L`˜À&0 L`˜Àæ#0)E+”a€ ̘DÄã:àóe–Ñü$@à" ]61L&S1̯7¿ fÀéxCf/j_b)$‡Åõ°oÏþ¤ÜõNõŠ†ÄMlÛ˜=ûü8fŽ\ebü§jÐ l+—Ÿ _×Å´Õ´˜Ó«ÍL³‹Ó <&„énz³e¾9÷û˜ÇÅÞÅÜ.£—{Ó?éV’æó˜®61ͽ©E¯ãõkU ÝÁP!"ÉÖ_©1Œ6ûIÿúWèLâ/aºxð7ýø úÌÓÕ&0‹™¢ý3m#e#ÿÙ¹IEND®B`‚CCfits/html/classCCfits_1_1Column_1_1RangeError-members.html0000644000225700000360000000661611667502526023472 0ustar cagordonlhea CCfits: Member List
CCfits::Column::RangeError Member List
This is the complete list of members for CCfits::Column::RangeError, including all inherited members.
FitsException(const string &msg, bool &silent)CCfits::FitsException
message() const CCfits::FitsException [inline]
RangeError(const String &msg, bool silent=true)CCfits::Column::RangeError
Generated on Tue Dec 6 2011 16:12:54 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Column_1_1WrongColumnType.html0000644000225700000360000001515711667505546023115 0ustar cagordonlhea CCfits: CCfits::Column::WrongColumnType Class Reference
Public Member Functions
CCfits::Column::WrongColumnType Class Reference

Exception thrown on attempting to access a scalar column as vector data. More...

#include <Column.h>

Inheritance diagram for CCfits::Column::WrongColumnType:
Inheritance diagram CCfits::FitsException

List of all members.

Public Member Functions

 WrongColumnType (const String &diag, bool silent=true)
 Exception ctor, prefixes the string "FitsError: Attempt to return scalar data from vector column, or vice versa - Column: " before the specific message.

Detailed Description

Exception thrown on attempting to access a scalar column as vector data.

This exception will be thrown if the user tries to call a read/write operation with a signature appropriate for a vector column on a scalar column, or vice versa. For example in the case of write operations, the vector versions require the specification of (a) a number of rows to write over, (b) a vector of lengths to write to each row or (c) a subset specification. The scalar versions only require a number of rows if the input array is a plain C-array, otherwise the range to be written is the size of the input vector.

Constructor & Destructor Documentation

CCfits::Column::WrongColumnType::WrongColumnType ( const String &  diag,
bool  silent = true 
)

Exception ctor, prefixes the string "FitsError: Attempt to return scalar data from vector column, or vice versa - Column: " before the specific message.

Parameters:
diagA specific diagnostic message, usually the column name.
silentif true, print message whether FITS::verboseMode is set or not.
The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:55 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Column_1_1WrongColumnType.png0000644000225700000360000000113511667502527022720 0ustar cagordonlhea‰PNG  IHDRÏP‰oÑûPLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2ìIDATxíÝà …¥Kúþ¼ Plu¶³9¦‹N~ôÁÛðY«…϶RxÀ3•‡ˆ¨m´mžZz)‰¿oµ0Íå©×7—"gù#†ù3ƒÇ½?zC>— ß­“ú&oYš›ÁóŸvõáxhàx.ñ¬Õ¤¶ÏZˆü<%­X…êU àÑfÉ´ßiùŒœÔ·'Ÿôa+oú0Oû¥==„×ñ¨›2Ó÷ñÜpð€<xÖj_‡ ,ÖŒ ïIEND®B`‚CCfits/html/classCCfits_1_1Column_1_1WrongColumnType-members.html0000644000225700000360000000667411667502527024545 0ustar cagordonlhea CCfits: Member List
CCfits::Column::WrongColumnType Member List
This is the complete list of members for CCfits::Column::WrongColumnType, including all inherited members.
FitsException(const string &msg, bool &silent)CCfits::FitsException
message() const CCfits::FitsException [inline]
WrongColumnType(const String &diag, bool silent=true)CCfits::Column::WrongColumnType
Generated on Tue Dec 6 2011 16:12:55 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1ExtHDU.html0000644000225700000360000017302011667505546017256 0ustar cagordonlhea CCfits: CCfits::ExtHDU Class Reference
Classes | Public Member Functions | Static Public Member Functions | Protected Member Functions
CCfits::ExtHDU Class Reference

base class for all FITS extension HDUs, i.e. Image Extensions and Tables. More...

#include <ExtHDU.h>

Inheritance diagram for CCfits::ExtHDU:
Inheritance diagram CCfits::HDU CCfits::ImageExt< T > CCfits::Table CCfits::AsciiTable CCfits::BinTable

List of all members.

Classes

class  WrongExtensionType
 Exception to be thrown on unmatched extension types. More...

Public Member Functions

 ExtHDU (const ExtHDU &right)
 copy constructor
virtual ~ExtHDU ()
 destructor
virtual void addColumn (ValueType type, const String &columnName, long repeatWidth, const String &colUnit=String(""), long decimals=-1, size_t columnNumber=0)
 add a new column to an existing table HDU.
virtual HDU * clone (FITSBase *p) const =0
 virtual copy constructor
virtual Column & column (const String &colName, bool caseSensitive=true) const
 return a reference to a Table column specified by name.
virtual Column & column (int colIndex) const
 return a reference to a Table column specified by column index.
virtual const std::map< string,
Column * > & 		column () const
 return a reference to the array containing the columns.
virtual void deleteColumn (const String &columnName)
 delete a column in a Table extension by name.
virtual long getRowsize () const
 return the optimal number of rows to read or write at a time
bool isCompressed () const
 return true if image is stored using compression.
virtual void makeThisCurrent () const
 move the fitsfile pointer to this current HDU.
const String & name () const
 return the name of the extension.
virtual int numCols () const
 return the number of Columns in the Table (the TFIELDS keyword).
template<typename S >
void read (std::valarray< S > &image)
 Read image data into container.
template<typename S >
void read (std::valarray< S > &image, long first, long nElements, S *nullValue)
 read part of an image array, processing null values.
template<typename S >
void read (std::valarray< S > &image, const std::vector< long > &first, long nElements, S *nullValue)
 read part of an image array, processing null values.
template<typename S >
void read (std::valarray< S > &image, const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::vector< long > &stride)
 read an image subset
template<typename S >
void read (std::valarray< S > &image, long first, long nElements)
 read an image section starting at a specified pixel
template<typename S >
void read (std::valarray< S > &image, const std::vector< long > &first, long nElements)
 read an image section starting at a location specified by an n-tuple
template<typename S >
void read (std::valarray< S > &image, const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::vector< long > &stride, S *nullValue)
 read an image subset into valarray image, processing null values
virtual void readData (bool readFlag=false, const std::vector< String > &keys=std::vector< String >())=0
 read data from HDU depending on readFlag and keys.
virtual long rows () const
 return the number of rows in the extension.
int version () const
 return the extension version number.
void version (int value)
 set the extension version number
template<typename S >
void write (const std::vector< long > &first, long nElements, const std::valarray< S > &data, S *nullValue)
 Write a set of pixels to an image extension with the first pixel specified by an n-tuple, processing undefined data.
template<typename S >
void write (long first, long nElements, const std::valarray< S > &data, S *nullValue)
 write array to image starting with a specified pixel and allowing undefined data to be processed
template<typename S >
void write (const std::vector< long > &first, long nElements, const std::valarray< S > &data)
 write array starting from specified n-tuple, without undefined data processing
template<typename S >
void write (long first, long nElements, const std::valarray< S > &data)
 write array starting from specified pixel number, without undefined data processing
template<typename S >
void write (const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::valarray< S > &data)
 write a subset (generalize slice) of data to the image

Static Public Member Functions

static void readHduName (const fitsfile *fptr, int hduIndex, String &hduName, int &hduVersion)
 read extension name.

Protected Member Functions

 ExtHDU (FITSBase *p, HduType xtype, const String &hduName, int version)
 default constructor, required as Standard Library Container content.
 ExtHDU (FITSBase *p, HduType xtype, const String &hduName, int bitpix, int naxis, const std::vector< long > &axes, int version)
 writing constructor.
 ExtHDU (FITSBase *p, HduType xtype, int number)
 ExtHDU constructor for getting ExtHDUs by number.
long gcount () const
 return required gcount keyword value
void gcount (long value)
 set required gcount keyword value
long pcount () const
 return required pcount keyword value
void pcount (long value)
 set required pcount keyword value
HduType xtension () const
 return the extension type
void xtension (HduType value)
 set the extension type

Detailed Description

base class for all FITS extension HDUs, i.e. Image Extensions and Tables.

ExtHDU needs to have the combined public interface of Table objects and images. It achieves this by providing the same set of read and write operations as PHDU, and also providing the same operations for extracting columns from the extension as does Table [after which the column interface is accessible]. Differentiation between extension types operates by exception handling: .i.e. attempting to access image data structures on a Table object through the ExtHDU interface will or trying to return a Column reference from an Image extension will both throw an exception

Constructor & Destructor Documentation

CCfits::ExtHDU::ExtHDU ( FITSBase *  p,
HduType  xtype,
const String &  hduName,
int  bitpix,
int  naxis,
const std::vector< long > &  axes,
int  version 
) [protected]

writing constructor.

The writing constructor forces the user to supply a name for the HDU. The bitpix, naxes and naxis data required by this constructor are required FITS keywords for any HDUs.

CCfits::ExtHDU::ExtHDU ( FITSBase *  p,
HduType  xtype,
int  number 
) [protected]

ExtHDU constructor for getting ExtHDUs by number.

Necessary since EXTNAME is a reserved, not required, keyword. But a synthetic name is supplied by static ExtHDU::readHduName which is called by this constructor.

Member Function Documentation

void CCfits::ExtHDU::addColumn ( ValueType  type,
const String &  columnName,
long  repeatWidth,
const String &  colUnit = String(""),
long  decimals = -1,
size_t  columnNumber = 0 
) [virtual]

add a new column to an existing table HDU.

Parameters:
typeThe data type of the column to be added
columnNameThe name of the column to be added
repeatWidthfor a string valued, this is the width of a string. For a numeric column it supplies the vector length of the rows. It is ignored for ascii table numeric data.
colUnitan optional field specifying the units of the data (TUNITn)
decimalsoptional parameter specifying the number of decimals for an ascii numeric column
columnNumberoptional parameter specifying column number to be created. If not specified the column is added to the end. If specified, the column is inserted and the columns already read are reindexed. This parameter is provided as a convenience to support existing code rather than recommended.

Reimplemented in CCfits::AsciiTable, and CCfits::BinTable.

Column & CCfits::ExtHDU::column ( const String &  colName,
bool  caseSensitive = true 
) const [virtual]

return a reference to a Table column specified by name.

If the caseSensitive parameter is set to false, the search will be case-insensitive. The overridden base class implementation ExtHDU::column throws an exception, which is thus the action to be taken if self is an image extension

Exceptions:
WrongExtensionTypesee above

Reimplemented in CCfits::Table.

Column & CCfits::ExtHDU::column ( int  colIndex) const [virtual]

return a reference to a Table column specified by column index.

This version is provided for convenience; the 'return by name' version is more efficient because columns are stored in an associative array sorted by name.

Exceptions:
WrongExtensionTypethrown if *this is an image extension.

Reimplemented in CCfits::Table.

const map< string, Column * > & CCfits::ExtHDU::column ( ) const [virtual]

return a reference to the array containing the columns.

Exceptions:
WrongExtensionTypethrown if *this is an image extension.

Reimplemented in CCfits::Table.

void CCfits::ExtHDU::deleteColumn ( const String &  columnName) [virtual]

delete a column in a Table extension by name.

Parameters:
columnNameThe name of the column to be deleted.
Exceptions:
WrongExtensionTypeif extension is an image.

Reimplemented in CCfits::Table.

long CCfits::ExtHDU::getRowsize ( ) const [virtual]

return the optimal number of rows to read or write at a time

A wrapper for the CFITSIO function fits_get_rowsize, useful for obtaining maximum I/O efficiency. This will throw if it is not called for a Table extension.

Reimplemented in CCfits::Table.

bool CCfits::ExtHDU::isCompressed ( ) const

return true if image is stored using compression.

This is simply a wrapper around the CFITSIO fits_is_compressed_image function. It will throw if this is not an Image extension.

void CCfits::ExtHDU::makeThisCurrent ( ) const [virtual]

move the fitsfile pointer to this current HDU.

This function should never need to be called by the user since it is called internally whenever required.

Reimplemented from CCfits::HDU.

int CCfits::ExtHDU::numCols ( ) const [virtual]

return the number of Columns in the Table (the TFIELDS keyword).

Exceptions:
WrongExtensionTypethrown if *this is an image extension.

Reimplemented in CCfits::Table.

template<typename S >
void CCfits::ExtHDU::read ( std::valarray< S > &  image)

Read image data into container.

The container image contains the entire image array after the call. This and all the other variants of read() throw a WrongExtensionType exception if called for a Table object.

template<typename S >
void CCfits::ExtHDU::read ( std::valarray< S > &  image,
long  first,
long  nElements,
S *  nullValue 
)

read part of an image array, processing null values.

Implicit data conversion is supported (i.e. user does not need to know the type of the data stored. A WrongExtensionType extension is thrown if *this is not an image.

Parameters:
imageThe receiving container, a std::valarray reference
firstThe first pixel from the array to read [a long value]
nElementsThe number of values to read
nullValueA pointer containing the value in the table to be considered as undefined. See cfitsio for details
template<typename S >
void CCfits::ExtHDU::read ( std::valarray< S > &  image,
const std::vector< long > &  first,
long  nElements,
S *  nullValue 
)

read part of an image array, processing null values.

As above except for

Parameters:
firsta vector<long> representing an n-tuple giving the coordinates in the image of the first pixel.
template<typename S >
void CCfits::ExtHDU::read ( std::valarray< S > &  image,
const std::vector< long > &  firstVertex,
const std::vector< long > &  lastVertex,
const std::vector< long > &  stride,
S *  nullValue 
)

read an image subset into valarray image, processing null values

The image subset is defined by two vertices and a stride indicating the 'denseness' of the values to be picked in each dimension (a stride = (1,1,1,...) means picking every pixel in every dimension, whereas stride = (2,2,2,...) means picking every other value in each dimension.

static void CCfits::ExtHDU::readHduName ( const fitsfile *  fptr,
int  hduIndex,
String &  hduName,
int &  hduVersion 
) [static]

read extension name.

Used primarily to allow extensions to be specified by HDU number and provide their name for the associative array that contains them. Alternatively, if there is no name keyword in the extension, one is synthesized from the index.

long CCfits::ExtHDU::rows ( ) const [virtual]

return the number of rows in the extension.

Exceptions:
WrongExtensionTypethrown if *this is an image extension.

Reimplemented in CCfits::Table.

template<typename S >
void CCfits::ExtHDU::write ( const std::vector< long > &  first,
long  nElements,
const std::valarray< S > &  data,
S *  nullValue 
)

Write a set of pixels to an image extension with the first pixel specified by an n-tuple, processing undefined data.

All the overloaded versions of ExtHDU::write perform operations on *this if it is an image and throw a WrongExtensionType exception if not. Where appropriate, alternate versions allow undefined data to be processed

Parameters:
firstan n-tuple of dimension equal to the image dimension specifying the first pixel in the range to be written
nElementsnumber of pixels to be written
dataarray of data to be written
nullValuepointer to null value (data with this value written as undefined; needs the BLANK keyword to have been specified).
template<typename S >
void CCfits::ExtHDU::write ( long  first,
long  nElements,
const std::valarray< S > &  data,
S *  nullValue 
)

write array to image starting with a specified pixel and allowing undefined data to be processed

parameters after the first are as for version with n-tuple specifying first element. these two version are equivalent, except that it is possible for the first pixel number to exceed the range of 32-bit integers, which is how long datatype is commonly implemented.

template<typename S >
void CCfits::ExtHDU::write ( const std::vector< long > &  firstVertex,
const std::vector< long > &  lastVertex,
const std::valarray< S > &  data 
)

write a subset (generalize slice) of data to the image

A generalized slice/subset is a subset of the image (e.g. one plane of a data cube of size <= the dimension of the cube). It is specified by two opposite vertices. The equivalent cfitsio call does not support undefined data processing so there is no version that allows a null value to be specified.

Parameters:
firstVertexthe coordinates specifying lower and upper vertices of the n-dimensional slice
lastVertex
dataThe data to be written
HduType CCfits::ExtHDU::xtension ( ) const [inline, protected]

return the extension type

allowed values are ImageHDU, AsciiTbl, and BinaryTbl

The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:55 for CCfits by   doxygen 1.7.5.1
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CCfits::ExtHDU Member List
This is the complete list of members for CCfits::ExtHDU, including all inherited members.
addColumn(ValueType type, const String &columnName, long repeatWidth, const String &colUnit=String(""), long decimals=-1, size_t columnNumber=0)CCfits::ExtHDU [virtual]
addKey(const String &name, T val, const String &comment)CCfits::HDU
addKey(const Keyword *inKeyword)CCfits::HDU
axes() const CCfits::HDU [inline]
axis(size_t index) const CCfits::HDU [inline]
bitpix() const CCfits::HDU [inline]
clone(FITSBase *p) const =0CCfits::ExtHDU [pure virtual]
column(const String &colName, bool caseSensitive=true) const CCfits::ExtHDU [virtual]
column(int colIndex) const CCfits::ExtHDU [virtual]
column() const CCfits::ExtHDU [virtual]
comment() const CCfits::HDU [inline]
copyAllKeys(const HDU *inHdu)CCfits::HDU
deleteColumn(const String &columnName)CCfits::ExtHDU [virtual]
deleteKey(const String &doomed)CCfits::HDU
ExtHDU(const ExtHDU &right)CCfits::ExtHDU
ExtHDU(FITSBase *p, HduType xtype, const String &hduName, int version)CCfits::ExtHDU [protected]
ExtHDU(FITSBase *p, HduType xtype, const String &hduName, int bitpix, int naxis, const std::vector< long > &axes, int version)CCfits::ExtHDU [protected]
ExtHDU(FITSBase *p, HduType xtype, int number)CCfits::ExtHDU [protected]
fitsPointer() const CCfits::HDU
gcount() const CCfits::ExtHDU [inline, protected]
gcount(long value)CCfits::ExtHDU [inline, protected]
getChecksum() const CCfits::HDU
getComments()CCfits::HDU
getHistory()CCfits::HDU
getRowsize() const CCfits::ExtHDU [virtual]
HDU(const HDU &right)CCfits::HDU
HDU(FITSBase *p=0)CCfits::HDU [protected]
HDU(FITSBase *p, int bitpix, int naxis, const std::vector< long > &axes)CCfits::HDU [protected]
history() const CCfits::HDU [inline]
index(int value)CCfits::HDU [inline]
index() const CCfits::HDU [inline]
isCompressed() const CCfits::ExtHDU
keyWord()CCfits::HDU [inline]
keyWord(const String &keyName)CCfits::HDU [inline]
keyWord() const CCfits::HDU [inline]
keyWord(const string &keyname) const CCfits::HDU [inline]
keywordCategories()CCfits::HDU [static]
makeThisCurrent() const CCfits::ExtHDU [virtual]
name() const CCfits::ExtHDU [inline]
naxes()CCfits::HDU [inline, protected]
numCols() const CCfits::ExtHDU [virtual]
operator!=(const HDU &right) const CCfits::HDU
operator==(const HDU &right) const CCfits::HDU
parent() const CCfits::HDU
pcount() const CCfits::ExtHDU [inline, protected]
pcount(long value)CCfits::ExtHDU [inline, protected]
read(std::valarray< S > &image)CCfits::ExtHDU
read(std::valarray< S > &image, long first, long nElements, S *nullValue)CCfits::ExtHDU
read(std::valarray< S > &image, const std::vector< long > &first, long nElements, S *nullValue)CCfits::ExtHDU
read(std::valarray< S > &image, const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::vector< long > &stride)CCfits::ExtHDU
read(std::valarray< S > &image, long first, long nElements)CCfits::ExtHDU
read(std::valarray< S > &image, const std::vector< long > &first, long nElements)CCfits::ExtHDU
read(std::valarray< S > &image, const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::vector< long > &stride, S *nullValue)CCfits::ExtHDU
readAllKeys()CCfits::HDU
readData(bool readFlag=false, const std::vector< String > &keys=std::vector< String >())=0CCfits::ExtHDU [pure virtual]
readHduName(const fitsfile *fptr, int hduIndex, String &hduName, int &hduVersion)CCfits::ExtHDU [static]
readKey(const String &keyName, T &val)CCfits::HDU
readKeys(std::vector< String > &keyNames, std::vector< T > &vals)CCfits::HDU
rows() const CCfits::ExtHDU [virtual]
scale() const CCfits::HDU [inline, virtual]
scale(double value)CCfits::HDU [inline, virtual]
suppressScaling(bool toggle=true)CCfits::HDU
updateChecksum()CCfits::HDU
verifyChecksum() const CCfits::HDU
version() const CCfits::ExtHDU [inline]
version(int value)CCfits::ExtHDU [inline]
write(const std::vector< long > &first, long nElements, const std::valarray< S > &data, S *nullValue)CCfits::ExtHDU
write(long first, long nElements, const std::valarray< S > &data, S *nullValue)CCfits::ExtHDU
write(const std::vector< long > &first, long nElements, const std::valarray< S > &data)CCfits::ExtHDU
write(long first, long nElements, const std::valarray< S > &data)CCfits::ExtHDU
write(const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::valarray< S > &data)CCfits::ExtHDU
writeChecksum()CCfits::HDU
writeComment(const String &comment="Generic Comment")CCfits::HDU
writeDate()CCfits::HDU
writeHistory(const String &history="Generic History String")CCfits::HDU
xtension() const CCfits::ExtHDU [inline, protected]
xtension(HduType value)CCfits::ExtHDU [inline, protected]
zero() const CCfits::HDU [inline, virtual]
zero(double value)CCfits::HDU [inline, virtual]
~ExtHDU()CCfits::ExtHDU [virtual]
~HDU()CCfits::HDU [protected, virtual]
Generated on Tue Dec 6 2011 16:12:55 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1ExtHDU_1_1WrongExtensionType.html0000644000225700000360000001430011667505546023465 0ustar cagordonlhea CCfits: CCfits::ExtHDU::WrongExtensionType Class Reference
Public Member Functions
CCfits::ExtHDU::WrongExtensionType Class Reference
FITS Exceptions

Exception to be thrown on unmatched extension types. More...

#include <ExtHDU.h>

Inheritance diagram for CCfits::ExtHDU::WrongExtensionType:
Inheritance diagram CCfits::FitsException

List of all members.

Public Member Functions

 WrongExtensionType (const String &msg, bool silent=true)
 Exception ctor, prefixes the string "Fits Error: wrong extension type" before the specific message.

Detailed Description

Exception to be thrown on unmatched extension types.

This exception is to be thrown if the user requested a particular extension and it does not correspond to the expected type.

Constructor & Destructor Documentation

CCfits::ExtHDU::WrongExtensionType::WrongExtensionType ( const String &  msg,
bool  silent = true 
)

Exception ctor, prefixes the string "Fits Error: wrong extension type" before the specific message.

Parameters:
msgA specific diagnostic message
silentif true, print message whether FITS::verboseMode is set or not.
The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:55 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1ExtHDU_1_1WrongExtensionType.png0000644000225700000360000000122611667502527023304 0ustar cagordonlhea‰PNG  IHDRÜPEöëPLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2%IDATxíÝ’Ã …%Éû?ò^ˆÊŸ‰mS“uŽíŽVåCÀÛôZx¤×¶ìà÷OàˆˆÔ‚h£mË{J‹òv•”½#ãÎÐT¸Ì#쌅 –n_Aö9œó”ï'OÍ·*â“e¢-«QœØ»®Ü¢ÿŠ<ëìÉÉ*¶½ÇÀéš3’Zsöªã~\œ–M":‹€«çápQI ‰OËèo„‹»¥+«£šãƒ57νsÒ;_J’Sð [ò›Y÷¦Ãýf\ôÀpÏ€à¦Ã-<ÒܱOþ€»Šm_˜ne¸}_˜ni8tKÀp€à8Àp€à8Àp€[Ž‰ÖMÀp·ÁQ^—Eî6žÛP=Îrb ¯Å1'-[ } ûü\u©,X`áì¯g ¼wH1z® çÂFD)O͈TOIHéàr*/}z4«^‹-¨mЦÛî«×Îد€pLŽ—B-Ç‹“¸JzVµV°mà”Ê;p¾:J0kæwn.ô-šÉYuS°moî#¸ -µGi9笶€õ™uÐ'Çᢒ CCfits: Member List
CCfits::ExtHDU::WrongExtensionType Member List
This is the complete list of members for CCfits::ExtHDU::WrongExtensionType, including all inherited members.
FitsException(const string &msg, bool &silent)CCfits::FitsException
message() const CCfits::FitsException [inline]
WrongExtensionType(const String &msg, bool silent=true)CCfits::ExtHDU::WrongExtensionType
Generated on Tue Dec 6 2011 16:12:55 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FITS-members.html0000644000225700000360000003504711667502527020354 0ustar cagordonlhea CCfits: Member List
CCfits::FITS Member List
This is the complete list of members for CCfits::FITS, including all inherited members.
addImage(const String &hduName, int bpix, std::vector< long > &naxes, int version=1)CCfits::FITS
addTable(const String &hduName, int rows, const std::vector< String > &columnName=std::vector< String >(), const std::vector< String > &columnFmt=std::vector< String >(), const std::vector< String > &columnUnit=std::vector< String >(), HduType type=BinaryTbl, int version=1)CCfits::FITS
clearErrors()CCfits::FITS [static]
copy(const HDU &source)CCfits::FITS
currentExtension()CCfits::FITS
currentExtensionName() const CCfits::FITS
deleteExtension(const String &doomed, int version=1)CCfits::FITS
deleteExtension(int doomed)CCfits::FITS
destroy()CCfits::FITS
extension(int i) const CCfits::FITS
extension(int i)CCfits::FITS
extension(const String &hduName, int version=1) const CCfits::FITS
extension(const String &hduName, int version=1)CCfits::FITS [inline]
extension() const CCfits::FITS
filter(const String &expression, ExtHDU &inputTable, bool overwrite=true, bool readData=false)CCfits::FITS
FITS(const String &name, RWmode mode=Read, bool readDataFlag=false, const std::vector< String > &primaryKeys=std::vector< String >())CCfits::FITS
FITS(const String &name, RWmode mode, const string &hduName, bool readDataFlag=false, const std::vector< String > &hduKeys=std::vector< String >(), const std::vector< String > &primaryKey=std::vector< String >(), int version=1)CCfits::FITS
FITS(const String &name, RWmode mode, const std::vector< String > &hduNames, bool readDataFlag=false, const std::vector< String > &primaryKey=std::vector< String >())CCfits::FITS
FITS(const String &fileName, const FITS &source)CCfits::FITS
FITS(const String &name, RWmode mode, const std::vector< String > &hduNames, const std::vector< std::vector< String > > &hduKeys, bool readDataFlag=false, const std::vector< String > &primaryKeys=std::vector< String >(), const std::vector< int > &hduVersions=std::vector< int >())CCfits::FITS
FITS(const String &name, int bitpix, int naxis, long *naxes)CCfits::FITS
FITS(const string &name, RWmode mode, int hduIndex, bool readDataFlag=false, const std::vector< String > &hduKeys=std::vector< String >(), const std::vector< String > &primaryKey=std::vector< String >())CCfits::FITS
FITS(const String &name, RWmode mode, const std::vector< String > &searchKeys, const std::vector< String > &searchValues, bool readDataFlag=false, const std::vector< String > &hduKeys=std::vector< String >(), const std::vector< String > &primaryKey=std::vector< string >(), int version=1)CCfits::FITS
fitsPointer() const CCfits::FITS
flush()CCfits::FITS
getCompressionType() const CCfits::FITS
getNoiseBits() const CCfits::FITS
getTileDimensions(std::vector< long > &tileSizes) const CCfits::FITS
name() const CCfits::FITS
pHDU() const CCfits::FITS
pHDU()CCfits::FITS
read(const String &hduName, bool readDataFlag=false, const std::vector< String > &keys=std::vector< String >(), int version=1)CCfits::FITS
read(const std::vector< String > &hduNames, bool readDataFlag=false)CCfits::FITS
read(const std::vector< String > &hduNames, const std::vector< std::vector< String > > &keys, bool readDataFlag=false, const std::vector< int > &hduVersions=std::vector< int >())CCfits::FITS
read(int hduIndex, bool readDataFlag=false, const std::vector< String > &keys=std::vector< String >())CCfits::FITS
read(const std::vector< String > &searchKeys, const std::vector< String > &searchValues, bool readDataFlag=false, const std::vector< String > &hduKeys=std::vector< String >(), int version=1)CCfits::FITS
resetPosition()CCfits::FITS
setCompressionType(int compType)CCfits::FITS
setNoiseBits(int noiseBits)CCfits::FITS
setTileDimensions(const std::vector< long > &tileSizes)CCfits::FITS
setVerboseMode(bool value)CCfits::FITS [inline, static]
verboseMode()CCfits::FITS [inline, static]
~FITS()CCfits::FITS
Generated on Tue Dec 6 2011 16:12:55 for CCfits by   doxygen 1.7.5.1
CCfits/html/structCCfits_1_1FITS_1_1CantCreate.html0000644000225700000360000001427311667505546021537 0ustar cagordonlhea CCfits: CCfits::FITS::CantCreate Class Reference
Public Member Functions
CCfits::FITS::CantCreate Class Reference
FITS Exceptions

thrown on failure to create new file More...

#include <FITS.h>

Inheritance diagram for CCfits::FITS::CantCreate:
Inheritance diagram CCfits::FitsException

List of all members.

Public Member Functions

 CantCreate (const String &diag, bool silent=false)
 Exception ctor prefixes the string: "FITS Error: Cannot create file " before specific message.

Detailed Description

thrown on failure to create new file

Constructor & Destructor Documentation

CCfits::FITS::CantCreate::CantCreate ( const String &  msg,
bool  silent = false 
)

Exception ctor prefixes the string: "FITS Error: Cannot create file " before specific message.

This exception will be thrown if the user attempts to write to a protected directory or attempts to create a new file with the same name as an existing file without specifying overwrite [overwrite is specified by adding the character '!' before the filename, following the cfitsio convention].

Parameters:
msgA specific diagnostic message, the name of the file that was to be created.
silentif true, print message whether FITS::verboseMode is set or not.
The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:56 for CCfits by   doxygen 1.7.5.1
CCfits/html/structCCfits_1_1FITS_1_1CantCreate.png0000644000225700000360000000104411667502527021343 0ustar cagordonlhea‰PNG  IHDR”PÈ›¬DPLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2³IDATxíÑŽÄ EÅIúÿŸ¼‚"`kÚé†Ý\Ó´†«xD°¯å“°•OMר_""š:D•jm¶i5sWÄvÒ¼£-¨Æ¡:ìÄBÝ«åö†PnŽGû Ÿ]VŠÆ'ž)ªmµ +Û(‰šÔy,lúcÛc¨9§ŒÒsÊÆmBt¼Ï âãŠÊxÕ â%¨(å”â/ Ø ¨¸ú\ÚœåOÜÈ©m(wOi¯>¿&¥ÕIõñ×mÛPï´ Py¡þ¨gP [ù^;¾èë_CGBªŒPÇ‘*%ªP€ (@ P€ õ·¡(a+”/ä€Ô‹PDÔúÒiU` ¹< IÙª‰ÆϼÎJrÕ¦© ÊW/#Øi±r566Ìñ(Emp¸oa¡ÂÁœ¸ÙÔ—é¯ (Ùœl@äÔ'½Ow3»MŒCî,{PsNÙ ‘TœJŸç]¨óã[Lç´^BÉæd”¶¡¢”[$V¸§E¤VÇqQ}>!¶«ÏAÍ+l唿§t¦ú M‰®t}Í»ïDÅ)£âêÃoP€T^¨„í›9Ž´ŽÌaIEND®B`‚CCfits/html/classCCfits_1_1FITS_1_1CantCreate-members.html0000644000225700000360000000660211667502530022733 0ustar cagordonlhea CCfits: Member List
CCfits::FITS::CantCreate Member List
This is the complete list of members for CCfits::FITS::CantCreate, including all inherited members.
CantCreate(const String &diag, bool silent=false)CCfits::FITS::CantCreate
FitsException(const string &msg, bool &silent)CCfits::FitsException
message() const CCfits::FitsException [inline]
Generated on Tue Dec 6 2011 16:12:56 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FITS_1_1CantOpen.html0000644000225700000360000001403211667505546021007 0ustar cagordonlhea CCfits: CCfits::FITS::CantOpen Class Reference
Public Member Functions
CCfits::FITS::CantOpen Class Reference
FITS Exceptions

thrown on failure to open existing file More...

#include <FITS.h>

Inheritance diagram for CCfits::FITS::CantOpen:
Inheritance diagram CCfits::FitsException

List of all members.

Public Member Functions

 CantOpen (const String &diag, bool silent=true)
 Exception ctor prefixes the string: "FITS Error: Cannot create file " before specific message.

Detailed Description

thrown on failure to open existing file

Constructor & Destructor Documentation

CCfits::FITS::CantOpen::CantOpen ( const String &  diag,
bool  silent = true 
)

Exception ctor prefixes the string: "FITS Error: Cannot create file " before specific message.

This exception will be thrown if users attempt to open an existing file for write access to which they do not have permission, or of course if the file does not exist.

Parameters:
diagA specific diagnostic message, the name of the file that was to be created.
silentif true, print message whether FITS::verboseMode is set or not.
The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:56 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FITS_1_1CantOpen.png0000644000225700000360000000103011667502530020607 0ustar cagordonlhea‰PNG  IHDRP fPLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2§IDATxíÝŽ„ …©“øþ¼-Ø?PgÝMcNc¦…úQxÛ>•¬}¶:Ð CCfits: Member List
CCfits::FITS::CantOpen Member List
This is the complete list of members for CCfits::FITS::CantOpen, including all inherited members.
CantOpen(const String &diag, bool silent=true)CCfits::FITS::CantOpen
FitsException(const string &msg, bool &silent)CCfits::FitsException
message() const CCfits::FitsException [inline]
Generated on Tue Dec 6 2011 16:12:56 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FITS_1_1NoSuchHDU.html0000644000225700000360000001427711667505546021053 0ustar cagordonlhea CCfits: CCfits::FITS::NoSuchHDU Class Reference
Public Member Functions
CCfits::FITS::NoSuchHDU Class Reference
FITS Exceptions

exception thrown by HDU retrieval methods. More...

#include <FITS.h>

Inheritance diagram for CCfits::FITS::NoSuchHDU:
Inheritance diagram CCfits::FitsException

List of all members.

Public Member Functions

 NoSuchHDU (const String &diag, bool silent=true)
 Exception ctor, prefixes the string "FITS Error: Cannot read HDU in FITS file:" before the specific message.

Detailed Description

exception thrown by HDU retrieval methods.

Constructor & Destructor Documentation

CCfits::FITS::NoSuchHDU::NoSuchHDU ( const String &  diag,
bool  silent = true 
)

Exception ctor, prefixes the string "FITS Error: Cannot read HDU in FITS file:" before the specific message.

Parameters:
diagA specific diagnostic message, usually the name of the extension whose read was attempted.
silentif true, print message whether FITS::verboseMode is set or not.

Exception to be thrown by failed seek operations

The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:56 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FITS_1_1NoSuchHDU.png0000644000225700000360000000105611667502530020650 0ustar cagordonlhea‰PNG  IHDR›P9÷ÉPLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2½IDATxíÝrÄ …%;“÷ä^(zãd³IKÛÃd ‚_øqoË+¯”×–UÈF¶l""f!²É¶UÙ%UÝ-ª[H ô[ÅE‹åÙ&˧žØrÌjÙ©¯º›Á‚_!ÍS_²ÕmR¿t°iãE:ÐáËoº»Øl¿9Kï7ŸEC°oa›×tX`(€­Ï̳l³vK¬é,}×ÙæsZjÕoÍñD¿½Ëî7 {ÏXjýsÚîÊ®{—í9w±‘í7±Ýó[O6²=ÖWÊ­²ßî¿°í{^¸Älûž.3ç”ld#ÙÈF6²‘ld#ÙÈF¶of“¼R$mÈF¶b‘ºÖEÇÞ&¨ˆ88ր㯠kµ›[¤¦éVuìZ]‚`¸Rà·oÉæ7l#øøÞ–=pÅæ !ÀìG-{rɦÑâãó¡­Ðžá×`\´Zà ÒU6Ûo>e6¯Ã Ø þÝ{•m]Ó™—a3 ±?ÌÛ´fÁ±ád]e›Ïih³SlÚNŽÍi§Hs¶p¿aÛÆÞ3³ìc"Ým ÓkØÂåÊß,²‘l›-¯|Šy!lÀ»›IEND®B`‚CCfits/html/classCCfits_1_1FITS_1_1NoSuchHDU-members.html0000644000225700000360000000656411667502530022471 0ustar cagordonlhea CCfits: Member List
CCfits::FITS::NoSuchHDU Member List
This is the complete list of members for CCfits::FITS::NoSuchHDU, including all inherited members.
FitsException(const string &msg, bool &silent)CCfits::FitsException
message() const CCfits::FitsException [inline]
NoSuchHDU(const String &diag, bool silent=true)CCfits::FITS::NoSuchHDU
Generated on Tue Dec 6 2011 16:12:56 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FITS_1_1OperationNotSupported.html0000644000225700000360000001424011667505546023630 0ustar cagordonlhea CCfits: CCfits::FITS::OperationNotSupported Class Reference
Public Member Functions
CCfits::FITS::OperationNotSupported Class Reference
FITS Exceptions

thrown for unsupported operations, such as attempted to select rows from an image extension. More...

#include <FITS.h>

Inheritance diagram for CCfits::FITS::OperationNotSupported:
Inheritance diagram CCfits::FitsException

List of all members.

Public Member Functions

 OperationNotSupported (const String &msg, bool silent=true)
 Exception ctor, prefixes the string "FITS Error: Operation not supported:" before the specific message.

Detailed Description

thrown for unsupported operations, such as attempted to select rows from an image extension.

Constructor & Destructor Documentation

CCfits::FITS::OperationNotSupported::OperationNotSupported ( const String &  msg,
bool  silent = true 
)

Exception ctor, prefixes the string "FITS Error: Operation not supported:" before the specific message.

Parameters:
msgA specific diagnostic message.
silentif true, print message whether FITS::verboseMode is set or not.
The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:56 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FITS_1_1OperationNotSupported.png0000644000225700000360000000122211667502530023432 0ustar cagordonlhea‰PNG  IHDRÙP£ß TPLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2!IDATxí]ŽÃ „ãTÊý¼3Ø„ÒÝ,EhP[(ãÿðz¼vmÇëܳ‘Œd$[—LD¤ˆœrž:WI‰NÛJžë)Šæ‘) ’%ž¬1°ùïX¿& f&ÏhW ³eXÁ;´3wrª˜è­ÁÜ×ȲÿâÂëf;/XæÖ «óÌ­XžyVœz²v4–(%@f•fe²VÂJŒÆ–ë¾EÖ®!•zy–6äÙ\²ðž¡i1窼NmLo£ÍÍ%ûŸöÈCF2’-×HF2’M!Ûµ3Û5õ4’=v튶-Ùu튶/k#ÉHF2’‘Œd$#ÉHF2’‘Œd$#ÉHF2’­F&»¶C6’‘ŒdSÉDDÇy åÅ‘§ºsH.ª°Ñééï3]ý¯ ÷º…La``M-&?naÐ’|AÍ€¦²âºrõÉ3ùØYÔ{H¶6­îÕŸäO]ñT‘ë.‚N­m°8ë“…þã]“ƒØyZo Ž*+±²h] QlªÍ’ÕyæÝ}êL¬í WggÚQ-yüºÙQ²~46·£Oð*RŒßYêÉî‘<™iþŒ¬•†7ÉÖô§q2,e#>«ƒãMm éõAmô ñž,æ"&ÏMžcYxÏ0qcÎUÖá9ôE,%°ú|Å2¤{XÛµÑdojãóíiÅí÷µ#N2’­ÒHF2’M!Ûµýhy.QŽ;+IEND®B`‚CCfits/html/classCCfits_1_1FITS_1_1OperationNotSupported-members.html0000644000225700000360000000673711667502530025262 0ustar cagordonlhea CCfits: Member List
CCfits::FITS::OperationNotSupported Member List
This is the complete list of members for CCfits::FITS::OperationNotSupported, including all inherited members.
FitsException(const string &msg, bool &silent)CCfits::FitsException
message() const CCfits::FitsException [inline]
OperationNotSupported(const String &msg, bool silent=true)CCfits::FITS::OperationNotSupported
Generated on Tue Dec 6 2011 16:12:56 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FitsError.html0000644000225700000360000001361311667505546020075 0ustar cagordonlhea CCfits: CCfits::FitsError Class Reference
Public Member Functions
CCfits::FitsError Class Reference
FITS Exceptions

FitsError is the exception thrown by non-zero cfitsio status codes. More...

#include <FitsError.h>

Inheritance diagram for CCfits::FitsError:
Inheritance diagram CCfits::FitsException

List of all members.

Public Member Functions

 FitsError (int errornum, bool silent=true)
 ctor for cfitsio exception: translates status code into cfitsio error message

Detailed Description

FitsError is the exception thrown by non-zero cfitsio status codes.

Constructor & Destructor Documentation

CCfits::FitsError::FitsError ( int  errornum,
bool  silent = true 
)

ctor for cfitsio exception: translates status code into cfitsio error message

The exception prefixes the string "Fits Error: " to the message printed by cfitsio.

Parameters:
errornumThe cfitsio status code produced by the error.
silentA boolean controlling the printing of messages
The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:56 for CCfits by   doxygen 1.7.5.1
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CCfits::FitsError Member List
This is the complete list of members for CCfits::FitsError, including all inherited members.
FitsError(int errornum, bool silent=true)CCfits::FitsError
FitsException(const string &msg, bool &silent)CCfits::FitsException
message() const CCfits::FitsException [inline]
Generated on Tue Dec 6 2011 16:12:56 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FitsException.html0000644000225700000360000002734311667505546020747 0ustar cagordonlhea CCfits: CCfits::FitsException Class Reference
Public Member Functions
CCfits::FitsException Class Reference
FITS Exceptions

FitsException is the base class for all exceptions thrown by this library. More...

#include <FitsError.h>

Inheritance diagram for CCfits::FitsException:
Inheritance diagram CCfits::Column::InsufficientElements CCfits::Column::InvalidDataType CCfits::Column::InvalidNumberOfRows CCfits::Column::InvalidRowNumber CCfits::Column::InvalidRowParameter CCfits::Column::NoNullValue CCfits::Column::RangeError CCfits::Column::WrongColumnType CCfits::ExtHDU::WrongExtensionType CCfits::FITS::CantCreate CCfits::FITS::CantOpen CCfits::FITS::NoSuchHDU CCfits::FITS::OperationNotSupported CCfits::FitsError CCfits::FITSUtil::UnrecognizedType CCfits::HDU::InvalidExtensionType CCfits::HDU::InvalidImageDataType CCfits::HDU::NoNullValue CCfits::HDU::NoSuchKeyword CCfits::Table::NoSuchColumn

List of all members.

Public Member Functions

 FitsException (const string &msg, bool &silent)
const string & message () const
 returns the error message

Detailed Description

FitsException is the base class for all exceptions thrown by this library.

All exceptions derived from this class can be caught by a single 'catch' clause catching FitsException by reference (which is the point of this base class design).

A static "verboseMode" parameter is provided by the FITS class to control diagnostics - if FITS::verboseMode() is true, all diagnostics are printed (for debugging purposes). If not, then a boolean silent determines printing of messages. Each exception derived from FitsException must define a default value for the silent parameter.

Constructor & Destructor Documentation

CCfits::FitsException::FitsException ( const string &  diag,
bool &  silent 
)
Parameters:
diagA diagnostic string to be printed optionally.
silentA boolean controlling the printing of messages

Member Function Documentation

const string & CCfits::FitsException::message ( ) const [inline]

returns the error message

This returns the diagnostic error message associated with the exception object, and which is accessible regardless of the verboseMode and silent flag settings.

The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:57 for CCfits by   doxygen 1.7.5.1
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CCfits::FitsException Member List
This is the complete list of members for CCfits::FitsException, including all inherited members.
FitsException(const string &msg, bool &silent)CCfits::FitsException
message() const CCfits::FitsException [inline]
Generated on Tue Dec 6 2011 16:12:57 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FitsFatal.html0000644000225700000360000001146011667502531020020 0ustar cagordonlhea CCfits: CCfits::FitsFatal Class Reference
Public Member Functions
CCfits::FitsFatal Class Reference
FITS Exceptions

[potential] base class for exceptions to be thrown on internal library error. More...

#include <FitsError.h>

List of all members.

Public Member Functions

 FitsFatal (const string &diag)
 Prints a message starting "*** CCfits Fatal Error: ..." and calls terminate()

Detailed Description

[potential] base class for exceptions to be thrown on internal library error.

As of this version there are no subclasses. This error requests that the user reports this circumstance to HEASARC.

Constructor & Destructor Documentation

CCfits::FitsFatal::FitsFatal ( const string &  diag)

Prints a message starting "*** CCfits Fatal Error: ..." and calls terminate()

Parameters:
diagA diagnostic string to be printed identifying the context of the error.
The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:57 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FitsFatal-members.html0000644000225700000360000000526011667502531021451 0ustar cagordonlhea CCfits: Member List
CCfits::FitsFatal Member List
This is the complete list of members for CCfits::FitsFatal, including all inherited members.
FitsFatal(const string &diag)CCfits::FitsFatal
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CCfits/html/classCCfits_1_1HDU.html0000644000225700000360000017355511667505546016612 0ustar cagordonlhea CCfits: CCfits::HDU Class Reference
Classes | Public Member Functions | Static Public Member Functions | Protected Member Functions
CCfits::HDU Class Reference

Base class for all HDU [Header-Data Unit] objects. More...

#include <HDU.h>

Inheritance diagram for CCfits::HDU:
Inheritance diagram CCfits::ExtHDU CCfits::PHDU CCfits::ImageExt< T > CCfits::Table CCfits::AsciiTable CCfits::BinTable

List of all members.

Classes

class  InvalidExtensionType
 exception to be thrown if user requests extension type that can not be understood as ImageExt, AsciiTable or BinTable. More...
class  InvalidImageDataType
 exception to be thrown if user requests creation of an image of type not supported by cfitsio. More...
class  NoNullValue
 exception to be thrown on seek errors for keywords. More...
class  NoSuchKeyword
 exception to be thrown on seek errors for keywords. More...

Public Member Functions

 HDU (const HDU &right)
 copy constructor
template<typename T >
Keyword & addKey (const String &name, T val, const String &comment)
 create a new keyword in the HDU with specified value and comment fields
Keyword * addKey (const Keyword *inKeyword)
 create a copy of an existing Keyword and add to HDU
long axes () const
 return the number of axes in the HDU data section (always 2 for tables).
long axis (size_t index) const
 return the size of axis numbered index [zero based].
long bitpix () const
 return the data type keyword.
virtual HDU * clone (FITSBase *p) const =0
 virtual copy constructor, to be implemented in subclasses.
const string & comment () const
 return the comment string previously read by getComment()
void copyAllKeys (const HDU *inHdu)
 copy all keys from another header
void deleteKey (const String &doomed)
 delete a keyword from the header
fitsfile * fitsPointer () const
 return the fitsfile pointer for the FITS object containing the HDU
std::pair< unsigned long,
unsigned long > 		getChecksum () const
 compute and return the checksum values for the HDU without creating or modifying the CHECKSUM/DATASUM keywords.
const String & getComments ()
 read the comments from the HDU and add it to the FITS object.
const String & getHistory ()
 read the history information from the HDU and add it to the FITS object.
const string & history () const
 return the history string previously read by getHistory()
void index (int value)
 set the HDU number
int index () const
 return the HDU number
std::map< String, Keyword * > & keyWord ()
 return the associative array containing the HDU keywords so far read.
Keyword & keyWord (const String &keyName)
 return a (previously read) keyword from the HDU object.
const std::map< string,
Keyword * > & 		keyWord () const
 return the associative array containing the HDU Keywords that have been read so far.
const Keyword & keyWord (const string &keyname) const
 return a (previously read) keyword from the HDU object. const version
virtual void makeThisCurrent () const
 move the fitsfile pointer to this current HDU.
bool operator!= (const HDU &right) const
 inequality operator
bool operator== (const HDU &right) const
 equality operator
FITSBase * parent () const
 return reference to the pointer representing the FITSBase object containing the HDU
void readAllKeys ()
 read all of the keys in the header
template<typename T >
void readKey (const String &keyName, T &val)
 read a keyword of specified type from the header of a disk FITS file and return its value.
template<typename T >
void readKeys (std::vector< String > &keyNames, std::vector< T > &vals)
 read a set of specified keywords of the same data type from the header of a disk FITS file and return their values
virtual double scale () const
 return the BSCALE keyword value
virtual void scale (double value)
 set the BSCALE keyword value for images (see warning for images of int type)
void suppressScaling (bool toggle=true)
 turn off image scaling regardless of the BSCALE and BZERO keyword values
void updateChecksum ()
 update the CHECKSUM keyword value, assuming DATASUM exists and is correct
std::pair< int, int > verifyChecksum () const
 verify the HDU by computing the checksums and comparing them with the CHECKSUM/DATASUM keywords
void writeChecksum ()
 compute and write the DATASUM and CHECKSUM keyword values
void writeComment (const String &comment="Generic Comment")
 write a comment string.
void writeDate ()
 write a date string to *this.
void writeHistory (const String &history="Generic History String")
 write a history string.
virtual double zero () const
 return the BZERO keyword value
virtual void zero (double value)
 set the BZERO keyword value for images (see warning for images of int type)

Static Public Member Functions

static std::vector< int > keywordCategories ()
 return the enumerated keyword categories used by readAllKeys() and copyAllKeys()

Protected Member Functions

 HDU (FITSBase *p=0)
 default constructor, called by HDU subclasses that read from FITS files.
 HDU (FITSBase *p, int bitpix, int naxis, const std::vector< long > &axes)
 constructor for creating new HDU objects, called by HDU subclasses writing to FITS files.
virtual ~HDU ()
 destructor
std::vector< long > & naxes ()
 return the HDU data axis array.

Detailed Description

Base class for all HDU [Header-Data Unit] objects.

HDU objects in CCfits are either PHDU (Primary HDU objects) or ExtHDU (Extension HDU) objects. Following the behavior. ExtHDUs are further subclassed into ImageExt or Table objects, which are finally AsciiTable or BinTable objects.

HDU's public interface gives access to properties that are common to all HDUs, largely required keywords, and functions that are common to all HDUs, principally the manipulation of keywords and their values.

HDUs must be constructed by HDUCreator objects which are called by FITS methods. Each HDU has an embedded pointer to a FITSBase object, which is private to FITS [FITSBase is a pointer encapsulating the resources of FITS. For details of this coding idiom see Exceptional C++ by Herb Sutter (2000) and references therein].

Member Function Documentation

template<typename T >
Keyword & CCfits::HDU::addKey ( const String &  name,
T  value,
const String &  comment 
)

create a new keyword in the HDU with specified value and comment fields

The function returns a reference to keyword object just created. If a keyword with this name already exists, it will be overwritten. Note that this is mostly intended for adding user-defined keywords. It should not be used to add keywords for which there are already specific HDU functions, such as scaling or checksum. Nor should it be used for image or column structural keywords, such as BITPIX, NAXIS, TFORMn, etc. As a general rule, it is best to use this for keywords belonging to the same categories listed in the keywordCategories() function.

Parameters:

Parameters:
name(String) The keyword name
value(Recommended T = String, double, std::complex<float>, int, or bool
comment(String) the keyword value

It is possible to create a keyword with a value of any of the allowed data types in fitsio (see the cfitsio manual section 4.3). However one should be aware that if this keyword value is read in from the file at a later time, it will be stored in a templated Keyword subclass (KeyData<T>) where T will be one of the recommended types listed above. Also see Keyword::value (T& val) for more details.

Keyword * CCfits::HDU::addKey ( const Keyword *  inKeyword)

create a copy of an existing Keyword and add to HDU

This is particularly useful for copying Keywords from one HDU to another. For example the inKeyword pointer might come from a different HDU's std::map<string,Keyword*>. If a keyword with this name already exists, it will be overwritten. The return value is a pointer to the newly created Keyword inserted into this HDU. Also see copyAllKeys().

long CCfits::HDU::axis ( size_t  index) const [inline]

return the size of axis numbered index [zero based].

return the length of HDU data axis i.

long CCfits::HDU::bitpix ( ) const [inline]

return the data type keyword.

Takes values denoting the image data type for images, and takes the fixed value 8 for tables.

void CCfits::HDU::copyAllKeys ( const HDU *  inHdu)

copy all keys from another header

Parameters:

Parameters:
inHdu(const HDU*) An existing HDU whose keys will be copied.

This will copy all keys that exist in the keyWord map of inHDU, and which belong to one of the keyword classes returned by the keywordCategories() function. This is the same group of keyword classes used by readAllKeys().

void CCfits::HDU::deleteKey ( const String &  doomed)

delete a keyword from the header

removes doomed from the FITS file and from the FITS object

std::pair< unsigned long, unsigned long > CCfits::HDU::getChecksum ( ) const

compute and return the checksum values for the HDU without creating or modifying the CHECKSUM/DATASUM keywords.

Wrapper for the CFITSIO function fits_get_chksum: This returns a std::pair<unsigned long, unsigned long> where the pair's first data member holds the datasum value and second holds the hdusum value.

const String & CCfits::HDU::getComments ( )

read the comments from the HDU and add it to the FITS object.

The comment string found in the header is concatenated and returned to the calling function

const String & CCfits::HDU::getHistory ( )

read the history information from the HDU and add it to the FITS object.

The history string found in the header is concatenated and returned to the calling function

static std::vector< int > CCfits::HDU::keywordCategories ( ) [static]

return the enumerated keyword categories used by readAllKeys() and copyAllKeys()

This returns a vector of integers indicating which categories of keywords apply for the readAllKeys and copyAllKeys functions. The list of categories currently hardcoded is: TYP_CMPRS_KEY (20), TYP_CKSUM_KEY (100), TYP_WCS_KEY (110), TYP_REFSYS_KEY (120), and TYP_USER_KEY (150).

For the list of ALL keyword categories, see the CFITSIO documentation for the fits_get_keyclass function.

void CCfits::HDU::makeThisCurrent ( ) const [virtual]

move the fitsfile pointer to this current HDU.

This function should never need to be called by the user since it is called internally whenever required.

Reimplemented in CCfits::ExtHDU.

void CCfits::HDU::readAllKeys ( )

read all of the keys in the header

This member function reads keys that are not meta data for columns or image information, [which are considered to be part of the column or image objects]. Also, history and comment keys are read and returned by getHistory() and getComment(). The exact list of keyword classes this will read is returned by the function keywordCategories().

Note that readAllKeys can only construct keys of type string, double, complex<float>, integer, and bool because the FITS header records do not encode exact type information.

template<typename T >
void CCfits::HDU::readKey ( const String &  keyName,
T &  val 
)

read a keyword of specified type from the header of a disk FITS file and return its value.

T is one of the types String, double, float, int, std::complex<float>, and bool. If a Keyword object with the name keyName already exists in this HDU due to a previous read call, then this will re-read from the file and create a new Keyword object to replace the existing one.

template<typename T >
void CCfits::HDU::readKeys ( std::vector< String > &  keyNames,
std::vector< T > &  vals 
)

read a set of specified keywords of the same data type from the header of a disk FITS file and return their values

T is one of the types String, double, float, int, std::complex<float>, and bool.

void CCfits::HDU::scale ( double  value) [inline, virtual]

set the BSCALE keyword value for images (see warning for images of int type)

For primary HDUs and image extensions, this will add (or update) the BSCALE keyword in the header. The new setting will affect future image array read/writes as described in section 4.7 Data Scaling of the CFITSIO manual. For table extensions this function does nothing.

WARNING: If the image contains integer-type data (as indicated by the bitpix() return value), the new scale and zero value combination must not be such that the scaled data would require a floating-point type (this uses the CFITSIO function fits_get_img_equivtype to make the determination). If this situation occurs, the function will throw a FitsException.

Reimplemented in CCfits::PHDU, and CCfits::ImageExt< T >.

void CCfits::HDU::suppressScaling ( bool  toggle = true)

turn off image scaling regardless of the BSCALE and BZERO keyword values

For toggle = true, this turns off image scaling for future read/writes by resetting the scale and zero to 1.0 and 0.0 respectively. It does NOT modify the BSCALE and BZERO keywords. If toggle = false, the scale and zero values will be restored to the keyword values.

void CCfits::HDU::updateChecksum ( )

update the CHECKSUM keyword value, assuming DATASUM exists and is correct

Wrapper for the CFITSIO function fits_update_chksum: This recomputes and writes the CHECKSUM value with the assumption that the DATASUM value is correct. If the DATASUM keyword doesn't yet exist or is not up-to-date, use the HDU::writeChecksum function instead. This will throw a FitsError exception if called when there is no DATASUM keyword in the header.

std::pair< int, int > CCfits::HDU::verifyChecksum ( ) const

verify the HDU by computing the checksums and comparing them with the CHECKSUM/DATASUM keywords

Wrapper for the CFITSIO function fits_verify_chksum: The data unit is verified correctly if the computed checksum equals the DATASUM keyword value, and the HDU is verified if the entire checksum equals zero (see the CFITSIO manual for further details).

This returns a std::pair<int,int> where the pair's first data member = DATAOK and second = HDUOK. DATAOK and HDUOK values will be = 1 if verified correctly, 0 if the keyword is missing, and -1 if the computed checksum is not correct.

void CCfits::HDU::writeChecksum ( )

compute and write the DATASUM and CHECKSUM keyword values

Wrapper for the CFITSIO function fits_write_chksum: This performs the datasum and checksum calculations for this HDU, as described in the CFITSIO manual. If either the DATASUM or CHECKSUM keywords already exist, their values will be updated.

void CCfits::HDU::writeComment ( const String &  comment = "Generic Comment")

write a comment string.

A default value for the string is given ("Generic Comment String") so users can put a placeholder call to this function in their code.

void CCfits::HDU::writeHistory ( const String &  history = "Generic History String")

write a history string.

A default value for the string is given ("Generic History String") so users can put a placeholder call to this function in their code.

void CCfits::HDU::zero ( double  value) [inline, virtual]

set the BZERO keyword value for images (see warning for images of int type)

For primary HDUs and image extensions, this will add (or update) the BZERO keyword in the header. The new setting will affect future image array read/writes as described in section 4.7 Data Scaling of the CFITSIO manual. For table extensions this function does nothing.

WARNING: If the image contains integer-type data (as indicated by the bitpix() return value), the new scale and zero value combination must not be such that the scaled data would require a floating-point type (this uses the CFITSIO function fits_get_img_equivtype to make the determination). If this situation occurs, the function will throw a FitsException.

Reimplemented in CCfits::PHDU, and CCfits::ImageExt< T >.

The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:57 for CCfits by   doxygen 1.7.5.1
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CCfits::HDU Member List
This is the complete list of members for CCfits::HDU, including all inherited members.
addKey(const String &name, T val, const String &comment)CCfits::HDU
addKey(const Keyword *inKeyword)CCfits::HDU
axes() const CCfits::HDU [inline]
axis(size_t index) const CCfits::HDU [inline]
bitpix() const CCfits::HDU [inline]
clone(FITSBase *p) const =0CCfits::HDU [pure virtual]
comment() const CCfits::HDU [inline]
copyAllKeys(const HDU *inHdu)CCfits::HDU
deleteKey(const String &doomed)CCfits::HDU
fitsPointer() const CCfits::HDU
getChecksum() const CCfits::HDU
getComments()CCfits::HDU
getHistory()CCfits::HDU
HDU(const HDU &right)CCfits::HDU
HDU(FITSBase *p=0)CCfits::HDU [protected]
HDU(FITSBase *p, int bitpix, int naxis, const std::vector< long > &axes)CCfits::HDU [protected]
history() const CCfits::HDU [inline]
index(int value)CCfits::HDU [inline]
index() const CCfits::HDU [inline]
keyWord()CCfits::HDU [inline]
keyWord(const String &keyName)CCfits::HDU [inline]
keyWord() const CCfits::HDU [inline]
keyWord(const string &keyname) const CCfits::HDU [inline]
keywordCategories()CCfits::HDU [static]
makeThisCurrent() const CCfits::HDU [virtual]
naxes()CCfits::HDU [inline, protected]
operator!=(const HDU &right) const CCfits::HDU
operator==(const HDU &right) const CCfits::HDU
parent() const CCfits::HDU
readAllKeys()CCfits::HDU
readKey(const String &keyName, T &val)CCfits::HDU
readKeys(std::vector< String > &keyNames, std::vector< T > &vals)CCfits::HDU
scale() const CCfits::HDU [inline, virtual]
scale(double value)CCfits::HDU [inline, virtual]
suppressScaling(bool toggle=true)CCfits::HDU
updateChecksum()CCfits::HDU
verifyChecksum() const CCfits::HDU
writeChecksum()CCfits::HDU
writeComment(const String &comment="Generic Comment")CCfits::HDU
writeDate()CCfits::HDU
writeHistory(const String &history="Generic History String")CCfits::HDU
zero() const CCfits::HDU [inline, virtual]
zero(double value)CCfits::HDU [inline, virtual]
~HDU()CCfits::HDU [protected, virtual]
Generated on Tue Dec 6 2011 16:12:57 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1HDU_1_1InvalidExtensionType.html0000644000225700000360000001544211667505546023306 0ustar cagordonlhea CCfits: CCfits::HDU::InvalidExtensionType Class Reference
Public Member Functions
CCfits::HDU::InvalidExtensionType Class Reference
FITS Exceptions

exception to be thrown if user requests extension type that can not be understood as ImageExt, AsciiTable or BinTable. More...

#include <HDU.h>

Inheritance diagram for CCfits::HDU::InvalidExtensionType:
Inheritance diagram CCfits::FitsException

List of all members.

Public Member Functions

 InvalidExtensionType (const string &diag, bool silent=true)
 Exception ctor, prefixes the string "Fits Error: Extension Type: " before the specific message.

Detailed Description

exception to be thrown if user requests extension type that can not be understood as ImageExt, AsciiTable or BinTable.

Constructor & Destructor Documentation

CCfits::HDU::InvalidExtensionType::InvalidExtensionType ( const string &  diag,
bool  silent = true 
)

Exception ctor, prefixes the string "Fits Error: Extension Type: " before the specific message.

Parameters:
diagA specific diagnostic message
silentif true, print message whether FITS::verboseMode is set or not.
The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:57 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1HDU_1_1InvalidExtensionType.png0000644000225700000360000000117311667502531023111 0ustar cagordonlhea‰PNG  IHDRËP€„qPLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2 IDATxíYŽÃ †ãTêý<ÆxƒZ% µÙüá%¯Ûk±½öUXÀ– YˆˆÜ‚h§}g™³"WÈŽO]ÉÂî›E¹;²4–^~2Ï’+¯Ï“ºRÕFc©©ì”‰v6#~'#»‘Eb”&i:2;EC•ýŠÅ×KÐÔz‰Qrd ó',íSi†¥öˆÿÅÒ*'£É9Ö Ï},í>–Jâ¨^ÊÆz¹š%}_¬3¹vœ†óé •oU•]ÍrÍøîðÜ4À°L±¬3¶[ÆûžkÀ2‰ò^f!–÷{˜•XÐÇÀ°€,` XÀ°€,` XÀ°L Zgl´LðÁ°|ÄBD¼–7†ÀZLJÿ«=¥{‘¨dïÙ–(–f5ÀR]’…^Ýf‰ö§,‰êdË9^‡%9CDÛFeržX,” HICë}¾jFø½’1æýÔV£ÑcÑ=ñ×aÑŸZºÉiÍncÔ¸Ìnq,Îd†%gíQ\ò-ѹ’ù.dnjžäãòËtŽÉß&QvÖ²èûô})ûã,I=Ás̲„Ì5ÜJSÕùsûX¼l¨õR"ÕKÑÔÖK¿^ò÷ÅÖX¬\µÇWµq˜W¼YXLó9Äñ z}ìYøæ·æ‰,¡‚ŸÌ›Õ£ãÒ‡ XÀ2Á²Îø$Î+NѧÅKIEND®B`‚CCfits/html/classCCfits_1_1HDU_1_1InvalidExtensionType-members.html0000644000225700000360000000671611667502531024731 0ustar cagordonlhea CCfits: Member List
CCfits::HDU::InvalidExtensionType Member List
This is the complete list of members for CCfits::HDU::InvalidExtensionType, including all inherited members.
FitsException(const string &msg, bool &silent)CCfits::FitsException
InvalidExtensionType(const string &diag, bool silent=true)CCfits::HDU::InvalidExtensionType
message() const CCfits::FitsException [inline]
Generated on Tue Dec 6 2011 16:12:57 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1HDU_1_1InvalidImageDataType.html0000644000225700000360000001421011667505546023136 0ustar cagordonlhea CCfits: CCfits::HDU::InvalidImageDataType Class Reference
Public Member Functions
CCfits::HDU::InvalidImageDataType Class Reference
FITS Exceptions

exception to be thrown if user requests creation of an image of type not supported by cfitsio. More...

#include <HDU.h>

Inheritance diagram for CCfits::HDU::InvalidImageDataType:
Inheritance diagram CCfits::FitsException

List of all members.

Public Member Functions

 InvalidImageDataType (const string &diag, bool silent=true)
 Exception ctor, prefixes the string "Fits Error: Invalid Data Type for Image " before the specific message.

Detailed Description

exception to be thrown if user requests creation of an image of type not supported by cfitsio.

Constructor & Destructor Documentation

CCfits::HDU::InvalidImageDataType::InvalidImageDataType ( const string &  diag,
bool  silent = true 
)

Exception ctor, prefixes the string "Fits Error: Invalid Data Type for Image " before the specific message.

Parameters:
diagA specific diagnostic message
silentif true, print message whether FITS::verboseMode is set or not.
The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:58 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1HDU_1_1InvalidImageDataType.png0000644000225700000360000000121011667502531022741 0ustar cagordonlhea‰PNG  IHDRÐP_Ê žPLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2IDATxíYŽÃ †ãTÊý<`¼%MK2èGiAØ€?¼ðº½kÛk_ª@šDDdD;í{š3Z”¦‹„çz›‡~”Ô à*ÃS¯Ñ|¬Ë~HØSÄJ¢Ñ)¯äŽö¤Fé²ÔÜl öVüT 5ætçeîV ›CNRrÈûËàÖû€ê!'UP)ª¥˜’Ä«9j2P½Ê…4éåP^8CS€Â;¤-Šùd$)¼:U.¿ien ÐoÚå@º§@º ´XÛfµcÚIúŒçXŒh5 ãXŒh9 T9@€ @€ @ÿ ˆk­€¾DDĩT1pVÉÕ±ÌÈ.̓X÷l”ÞpªÔä bäü:× ÐzfÙ­ªp} `måΘ£Òd2A J¼+¯‹÷M<ˆ¶^-îæóQEÖ’5þkÉ'š¦³RR!m$as³r²q Ý|tËCñk•»ž*¾_m#1ªŸ:rüãpèÉýH©1!gôlŽÛUã@A|È3ÔbØ»æ}È…Í«œ¡*Wö˜aÑq…먵s(¾C:ï|>7‹~ýh"©iªÊ©ã*!UNožkYÖsùÔ¬rÏxåÏ*ÇRwþÁ@*jN8óÉ@_ó4€ ‹@‹µ?äô,nÅ”;'IEND®B`‚CCfits/html/classCCfits_1_1HDU_1_1InvalidImageDataType-members.html0000644000225700000360000000671611667502532024572 0ustar cagordonlhea CCfits: Member List
CCfits::HDU::InvalidImageDataType Member List
This is the complete list of members for CCfits::HDU::InvalidImageDataType, including all inherited members.
FitsException(const string &msg, bool &silent)CCfits::FitsException
InvalidImageDataType(const string &diag, bool silent=true)CCfits::HDU::InvalidImageDataType
message() const CCfits::FitsException [inline]
Generated on Tue Dec 6 2011 16:12:58 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1HDU_1_1NoNullValue.html0000644000225700000360000001407511667505546021366 0ustar cagordonlhea CCfits: CCfits::HDU::NoNullValue Class Reference
Public Member Functions
CCfits::HDU::NoNullValue Class Reference
FITS Exceptions

exception to be thrown on seek errors for keywords. More...

#include <HDU.h>

Inheritance diagram for CCfits::HDU::NoNullValue:
Inheritance diagram CCfits::FitsException

List of all members.

Public Member Functions

 NoNullValue (const string &diag, bool silent=true)
 Exception ctor, prefixes the string "Fits Error: No Null Pixel Value specified for Image " before the specific message.

Detailed Description

exception to be thrown on seek errors for keywords.

Constructor & Destructor Documentation

CCfits::HDU::NoNullValue::NoNullValue ( const string &  diag,
bool  silent = true 
)

Exception ctor, prefixes the string "Fits Error: No Null Pixel Value specified for Image " before the specific message.

Parameters:
diagA specific diagnostic message, the name of the HDU if not the primary.
silentif true, print message whether FITS::verboseMode is set or not.
The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:58 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1HDU_1_1NoNullValue.png0000644000225700000360000000104611667502532021170 0ustar cagordonlhea‰PNG  IHDR›P9÷ÉPLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2µIDATxíÑrÄ E½Ù™üÿ'÷AA͘]ÓÚö:™Õ Góš^ûŽô:vd#ÛlÐ,€Ç‘e²X5"»ÑѶŒcÅ—gë,'¢N˜ŒÙB r:yª®Um4v(ÿ” G6CÞ·‘}À&g“¤ÌNÞ°ÊV±µõæ4ZoþÒ€½„­ŸÓª1MaØ´gžeë•£ÑÄœöŽï}¶~Ÿ†’ºª·òljz»Ëî7ë<Ö^£Éù»èÓrWªì.Û3cîb#Ûob[ó­'ÙžaÛw¤¥ã\ëî¿°ç¾p³ç¾p;³±OÉF6²‘ld#ÙÈF6²‘ldûf6ì;¶MÙÈöClòZ¹Q{1)ý­’êÅüÞÕ©·²iYÅÍÛË]Tÿþ›ÛxJRB™:ç!Cˆƒú^'5Ð0TƒÙZgö°ÉãY.Ù‚T¡çÙügäâÜB¬Î»EøŒí^N‹Ó&V`ÓÀºQÑkKN²õúp [7§s}êÊl¦O¥9m,9šØ¤mANãý¦‡\rê{¡cß®^´0:é™BŸò›E6²‘íï±í;¾”ø!òÄIEND®B`‚CCfits/html/classCCfits_1_1HDU_1_1NoNullValue-members.html0000644000225700000360000000657511667502532023014 0ustar cagordonlhea CCfits: Member List
CCfits::HDU::NoNullValue Member List
This is the complete list of members for CCfits::HDU::NoNullValue, including all inherited members.
FitsException(const string &msg, bool &silent)CCfits::FitsException
message() const CCfits::FitsException [inline]
NoNullValue(const string &diag, bool silent=true)CCfits::HDU::NoNullValue
Generated on Tue Dec 6 2011 16:12:58 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1HDU_1_1NoSuchKeyword.html0000644000225700000360000001372011667505546021722 0ustar cagordonlhea CCfits: CCfits::HDU::NoSuchKeyword Class Reference
Public Member Functions
CCfits::HDU::NoSuchKeyword Class Reference
FITS Exceptions

exception to be thrown on seek errors for keywords. More...

#include <HDU.h>

Inheritance diagram for CCfits::HDU::NoSuchKeyword:
Inheritance diagram CCfits::FitsException

List of all members.

Public Member Functions

 NoSuchKeyword (const string &diag, bool silent=true)
 Exception ctor, prefixes the string "Fits Error: Keyword not found: " before the specific message.

Detailed Description

exception to be thrown on seek errors for keywords.

Constructor & Destructor Documentation

CCfits::HDU::NoSuchKeyword::NoSuchKeyword ( const string &  diag,
bool  silent = true 
)

Exception ctor, prefixes the string "Fits Error: Keyword not found: " before the specific message.

Parameters:
diagA specific diagnostic message, usually the name of the keyword requested.
silentif true, print message whether FITS::verboseMode is set or not.
The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:58 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1HDU_1_1NoSuchKeyword.png0000644000225700000360000000113411667502532021526 0ustar cagordonlhea‰PNG  IHDR³Pe´íPLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2ëIDATxíÛŽÃ Dq*åÿ?yÀ0¾$"U¢-í ´ ßr0Æy-¯õFym« 2“ùç˜EDÌBd“m«2c%UÜ5*; ÝÁ\1aÑÞᙓåÍEà9æвY§ñÊ® îNš§N²U3©ùÙÌšóøÀaÈpò†Cö4³­g§éõì³nv¶ó(s^C—˜û]ýæ¬ÜAk#K÷ýÌyß%{VÏÍq¢žïbý_kÛhjœôÖë»ì.ægÆõÆLæ_a~{™Ì_ƼÞ(ý¹Ðdä}=è™÷}=è™Ù7ÈLf2“™Ìd&3™ÉLf2“™Ìd&3™¿ŒYÖE–;@2“ùK™E¤®uQ/¨ÛS3iý¦KFø·acç:똻¿.0nÆìíÑ:åXûÂ9{f—¨RD¤i“c[Bx(À¤¥ªìGÛmƪ‰«l´åcæîžf}¦Bºh `;eB߬/2ûÏæIžÁI“h±Bý†|üÍ2_« =K[9³z÷4xì÷™³¾0ÉŒ7:cv{Sw³í#æ¼o¸2žéZ ‘ÙI㆔&cÍê9ög¼.¾¶±?ƒ½9–Þå±Û›a‚¹î®¾˜‡ÈüŸ¸å¾Ýs,Å<‰òaµAf2ÿ"ózãŒë&&ÃË–TIEND®B`‚CCfits/html/classCCfits_1_1HDU_1_1NoSuchKeyword-members.html0000644000225700000360000000661711667502532023351 0ustar cagordonlhea CCfits: Member List
CCfits::HDU::NoSuchKeyword Member List
This is the complete list of members for CCfits::HDU::NoSuchKeyword, including all inherited members.
FitsException(const string &msg, bool &silent)CCfits::FitsException
message() const CCfits::FitsException [inline]
NoSuchKeyword(const string &diag, bool silent=true)CCfits::HDU::NoSuchKeyword
Generated on Tue Dec 6 2011 16:12:58 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1ImageExt.html0000644000225700000360000003275111667505546017665 0ustar cagordonlhea CCfits: CCfits::ImageExt< T > Class Template Reference
Public Member Functions
CCfits::ImageExt< T > Class Template Reference
Inheritance diagram for CCfits::ImageExt< T >:
Inheritance diagram CCfits::ExtHDU CCfits::HDU

List of all members.

Public Member Functions

virtual ~ImageExt ()
 destructor
virtual ImageExt< T > * clone (FITSBase *p) const
 virtual copy constructor
const std::valarray< T > & image () const
 return the image data
virtual void readData (bool readFlag=false, const std::vector< String > &keys=std::vector< String >())
 read Image extension HDU data
virtual void scale (double value)
 set the BSCALE keyword value for images (see warning for images of int type)
virtual double scale () const
 return the BSCALE keyword value
virtual void zero (double value)
 set the BZERO keyword value for images (see warning for images of int type)
virtual double zero () const
 return the BZERO keyword value

Detailed Description

template<typename T>
class CCfits::ImageExt< T >

ImageExt<T> is a subclass of ExtHDU that contains image data of type T.

Member Function Documentation

template<typename T >
void CCfits::ImageExt< T >::readData ( bool  readFlag = false,
const std::vector< String > &  keys = std::vector<String>() 
) [virtual]

read Image extension HDU data

Called by FITS ctor, not intended for general use. parameters control how much gets read on initialization.

Parameters:
readFlagread the image data if true
keya vector of strings of keyword names to be read from the HDU

Implements CCfits::ExtHDU.

template<typename T >
void CCfits::ImageExt< T >::scale ( double  value) [virtual]

set the BSCALE keyword value for images (see warning for images of int type)

For primary HDUs and image extensions, this will add (or update) the BSCALE keyword in the header. The new setting will affect future image array read/writes as described in section 4.7 Data Scaling of the CFITSIO manual. For table extensions this function does nothing.

WARNING: If the image contains integer-type data (as indicated by the bitpix() return value), the new scale and zero value combination must not be such that the scaled data would require a floating-point type (this uses the CFITSIO function fits_get_img_equivtype to make the determination). If this situation occurs, the function will throw a FitsException.

Reimplemented from CCfits::HDU.

template<typename T >
void CCfits::ImageExt< T >::zero ( double  value) [virtual]

set the BZERO keyword value for images (see warning for images of int type)

For primary HDUs and image extensions, this will add (or update) the BZERO keyword in the header. The new setting will affect future image array read/writes as described in section 4.7 Data Scaling of the CFITSIO manual. For table extensions this function does nothing.

WARNING: If the image contains integer-type data (as indicated by the bitpix() return value), the new scale and zero value combination must not be such that the scaled data would require a floating-point type (this uses the CFITSIO function fits_get_img_equivtype to make the determination). If this situation occurs, the function will throw a FitsException.

Reimplemented from CCfits::HDU.

The documentation for this class was generated from the following file:
Generated on Tue Dec 6 2011 16:12:58 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1ImageExt.png0000644000225700000360000000117111667502532017465 0ustar cagordonlhea‰PNG  IHDR…ˆþšØÐPLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2IDATxíÝÑ΃ `&¼ÿ#ÿh)þ›Sg³²lˆˆ¥°Û´E(iËÏ*¨ø\¦dä\ÛF¯öÞm4ŸWôÁZEÞUÌý¯PôaZ@Οñ«0œ;mžþóœÂd„éËŠ+âoߥXï‘)nß#þ¼hŠ¶Gæìtç Op*¨ â:E„’ΗrÁ?¢(%#„¢”Œ î*¨ ‚ *¨ ‚ *¨ ‚Šóe‹PÒ–Ÿ/TPq\¦dä\ÛL/é—ó¸¹#u÷Ø»Šþl«È8³b¾Šy€zzmÒ9C~ƘÚÔpíq.P´iùz›{ù½ Ÿõ«5|A±X¥øV,–isËŠ¬÷ˆK›—ï^ôu7Ñ—,h ½GÜÃœ *¨8­ˆPÒùR.ãG¥D`„P”CÁ=BTPATPATPq¾ BIM*¨x¡Pë­RSwR¾DKÒ/»·±¯¨/V¹qXñ÷åó]áôR‚üŒgkc³ê É•o1ñƒŠ—Åj±z“º\¹²³èÓ<¬°±° ¦^•=2&¦>Äo(ÜŠŒv„q5Þkðéz@a[-d^ ¿"b±Þ#sü÷>/d”ƒyáÏ‹è±ÄŽ Yjöˆú“tëñjœ>ýž>ÁÕ)ñäÿÈêPæ*¿£ˆPþÀc7:Œ%fIEND®B`‚CCfits/html/classCCfits_1_1ImageExt-members.html0000644000225700000360000005726411667502532021313 0ustar cagordonlhea CCfits: Member List
CCfits::ImageExt< T > Member List
This is the complete list of members for CCfits::ImageExt< T >, including all inherited members.
addColumn(ValueType type, const String &columnName, long repeatWidth, const String &colUnit=String(""), long decimals=-1, size_t columnNumber=0)CCfits::ExtHDU [virtual]
addKey(const String &name, T val, const String &comment)CCfits::HDU
addKey(const Keyword *inKeyword)CCfits::HDU
axes() const CCfits::HDU [inline]
axis(size_t index) const CCfits::HDU [inline]
bitpix() const CCfits::HDU [inline]
clone(FITSBase *p) const CCfits::ImageExt< T > [virtual]
column(const String &colName, bool caseSensitive=true) const CCfits::ExtHDU [virtual]
column(int colIndex) const CCfits::ExtHDU [virtual]
column() const CCfits::ExtHDU [virtual]
comment() const CCfits::HDU [inline]
copyAllKeys(const HDU *inHdu)CCfits::HDU
deleteColumn(const String &columnName)CCfits::ExtHDU [virtual]
deleteKey(const String &doomed)CCfits::HDU
CCfits::ExtHDU::ExtHDU(const ExtHDU &right)CCfits::ExtHDU
CCfits::ExtHDU::ExtHDU(FITSBase *p, HduType xtype, const String &hduName, int version)CCfits::ExtHDU [protected]
CCfits::ExtHDU::ExtHDU(FITSBase *p, HduType xtype, const String &hduName, int bitpix, int naxis, const std::vector< long > &axes, int version)CCfits::ExtHDU [protected]
CCfits::ExtHDU::ExtHDU(FITSBase *p, HduType xtype, int number)CCfits::ExtHDU [protected]
fitsPointer() const CCfits::HDU
gcount() const CCfits::ExtHDU [inline, protected]
gcount(long value)CCfits::ExtHDU [inline, protected]
getChecksum() const CCfits::HDU
getComments()CCfits::HDU
getHistory()CCfits::HDU
getRowsize() const CCfits::ExtHDU [virtual]
HDU(const HDU &right)CCfits::HDU
HDU(FITSBase *p=0)CCfits::HDU [protected]
HDU(FITSBase *p, int bitpix, int naxis, const std::vector< long > &axes)CCfits::HDU [protected]
history() const CCfits::HDU [inline]
image() const CCfits::ImageExt< T >
index(int value)CCfits::HDU [inline]
index() const CCfits::HDU [inline]
isCompressed() const CCfits::ExtHDU
keyWord()CCfits::HDU [inline]
keyWord(const String &keyName)CCfits::HDU [inline]
keyWord() const CCfits::HDU [inline]
keyWord(const string &keyname) const CCfits::HDU [inline]
keywordCategories()CCfits::HDU [static]
makeThisCurrent() const CCfits::ExtHDU [virtual]
name() const CCfits::ExtHDU [inline]
naxes()CCfits::HDU [inline, protected]
numCols() const CCfits::ExtHDU [virtual]
operator!=(const HDU &right) const CCfits::HDU
operator==(const HDU &right) const CCfits::HDU
parent() const CCfits::HDU
pcount() const CCfits::ExtHDU [inline, protected]
pcount(long value)CCfits::ExtHDU [inline, protected]
read(std::valarray< S > &image)CCfits::ExtHDU
read(std::valarray< S > &image, long first, long nElements, S *nullValue)CCfits::ExtHDU
read(std::valarray< S > &image, const std::vector< long > &first, long nElements, S *nullValue)CCfits::ExtHDU
read(std::valarray< S > &image, const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::vector< long > &stride)CCfits::ExtHDU
read(std::valarray< S > &image, long first, long nElements)CCfits::ExtHDU
read(std::valarray< S > &image, const std::vector< long > &first, long nElements)CCfits::ExtHDU
read(std::valarray< S > &image, const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::vector< long > &stride, S *nullValue)CCfits::ExtHDU
readAllKeys()CCfits::HDU
readData(bool readFlag=false, const std::vector< String > &keys=std::vector< String >())CCfits::ImageExt< T > [virtual]
readHduName(const fitsfile *fptr, int hduIndex, String &hduName, int &hduVersion)CCfits::ExtHDU [static]
readKey(const String &keyName, T &val)CCfits::HDU
readKeys(std::vector< String > &keyNames, std::vector< T > &vals)CCfits::HDU
rows() const CCfits::ExtHDU [virtual]
scale(double value)CCfits::ImageExt< T > [virtual]
scale() const CCfits::ImageExt< T > [virtual]
suppressScaling(bool toggle=true)CCfits::HDU
updateChecksum()CCfits::HDU
verifyChecksum() const CCfits::HDU
version() const CCfits::ExtHDU [inline]
version(int value)CCfits::ExtHDU [inline]
write(const std::vector< long > &first, long nElements, const std::valarray< S > &data, S *nullValue)CCfits::ExtHDU
write(long first, long nElements, const std::valarray< S > &data, S *nullValue)CCfits::ExtHDU
write(const std::vector< long > &first, long nElements, const std::valarray< S > &data)CCfits::ExtHDU
write(long first, long nElements, const std::valarray< S > &data)CCfits::ExtHDU
write(const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::valarray< S > &data)CCfits::ExtHDU
writeChecksum()CCfits::HDU
writeComment(const String &comment="Generic Comment")CCfits::HDU
writeDate()CCfits::HDU
writeHistory(const String &history="Generic History String")CCfits::HDU
xtension() const CCfits::ExtHDU [inline, protected]
xtension(HduType value)CCfits::ExtHDU [inline, protected]
zero(double value)CCfits::ImageExt< T > [virtual]
zero() const CCfits::ImageExt< T > [virtual]
~ExtHDU()CCfits::ExtHDU [virtual]
~HDU()CCfits::HDU [protected, virtual]
~ImageExt()CCfits::ImageExt< T > [virtual]
Generated on Tue Dec 6 2011 16:12:58 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Keyword.html0000644000225700000360000005465711667502532017607 0ustar cagordonlhea CCfits: CCfits::Keyword Class Reference
Public Member Functions | Protected Member Functions
CCfits::Keyword Class Reference

Abstract base class defining the interface for Keyword objects. More...

#include <Keyword.h>

Inherited by CCfits::KeyData< T >.

List of all members.

Public Member Functions

virtual ~Keyword ()
 virtual destructor
virtual Keyword * clone () const =0
 virtual copy constructor
const String & comment () const
 return the comment field of the keyword
fitsfile * fitsPointer () const
 return a pointer to the FITS file containing the parent HDU.
ValueType keytype () const
 return the type of a keyword
const String & name () const
 return the name of a keyword
bool operator!= (const Keyword &right) const
 inequality operator
Keyword & operator= (const Keyword &right)
 assignment operator
bool operator== (const Keyword &right) const
 equality operator
template<typename T >
void setValue (const T &newValue)
 modify the value of an existing Keyword and write it to the file
template<typename T >
T & value (T &val) const
 get the keyword value
virtual void write ()
 left in for historical reasons, this seldom needs to be called by users

Protected Member Functions

 Keyword (const Keyword &right)
 copy constructor
 Keyword (const String &keyname, ValueType keytype, HDU *p, const String &comment="")
 Keyword constructor.
void keytype (ValueType value)
 set keyword type.
const HDU * parent () const
 return a pointer to parent HDU.

Detailed Description

Abstract base class defining the interface for Keyword objects.

Keyword object creation is normally performed inside FITS constructors or FITS::read, HDU::readKey, and HDU::addKey functions. Output is performed in HDU::addKey functions and Keyword::setValue.

Keywords consists of a name, a value and a comment field. Concrete templated subclasses, KeyData<T>, have a data member that holds the value of keyword.

Typically, the mandatory keywords for a given HDU type are not stored as object of type Keyword, but as intrinsic data types. The Keyword hierarchy is used to store user-supplied information.

Constructor & Destructor Documentation

CCfits::Keyword::Keyword ( const String &  keyname,
ValueType  keytype,
HDU *  p,
const String &  comment = "" 
) [protected]

Keyword constructor.

This is the common behavior of Keywords of any type. Constructor is protected as the class is abstract.

Member Function Documentation

template<typename T >
void CCfits::Keyword::setValue ( const T &  newValue)

modify the value of an existing Keyword and write it to the file

Parameters:
newValue(T) New value for the Keyword

Allowed T types: This must copy newValue to a data member of type U in the Keyword subclass KeyData<U> (see description for Keyword::value (T& val) for more details). To avoid compilation errors, it is generally best to provide a newValue of type T = type U, though the following type conversions will also be handled:

T (from newValue)U (to Keyword obj)
floatdouble, float
doubledouble, float (will lose precision)
intdouble, float, int, integer string
template<typename T >
T & CCfits::Keyword::value ( T &  val) const

get the keyword value

Parameters:
val(T) Will be filled with the keyword value, and is also the function return value.

Allowed T types: CCfits stores keyword values of type U in a templated subclass of Keyword, KeyData<U>. Normally U is set when reading the Keyword in from the file, and is limited to types int, double, string, bool, and complex<float>. (The exception is when the user has created and added a new Keyword using an HDU::addKey function, in which case they might have specified other types for U.) To avoid compilation errors, the user should generally try to provide a val of type T = type U, though there is some flexibility here as the following conversions are handled:

T (to val)U (from Keyword obj)
floatdouble (will lose precision), float, int, integer string
doubledouble, float, int, integer string
intint, integer string

More conversions may be added in the future as the need arises.

void CCfits::Keyword::write ( ) [virtual]

left in for historical reasons, this seldom needs to be called by users

This writes the Keyword to the file, and is called internally during HDU::addKey operations or the Keyword::setValue function. It shouldn't normally need to be called explicitly.

The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:58 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Keyword-members.html0000644000225700000360000001461411667502532021224 0ustar cagordonlhea CCfits: Member List
CCfits::Keyword Member List
This is the complete list of members for CCfits::Keyword, including all inherited members.
clone() const =0CCfits::Keyword [pure virtual]
comment() const CCfits::Keyword [inline]
fitsPointer() const CCfits::Keyword
keytype() const CCfits::Keyword [inline]
keytype(ValueType value)CCfits::Keyword [inline, protected]
Keyword(const Keyword &right)CCfits::Keyword [protected]
Keyword(const String &keyname, ValueType keytype, HDU *p, const String &comment="")CCfits::Keyword [protected]
name() const CCfits::Keyword [inline]
operator!=(const Keyword &right) const CCfits::Keyword
operator=(const Keyword &right)CCfits::Keyword
operator==(const Keyword &right) const CCfits::Keyword
parent() const CCfits::Keyword [inline, protected]
setValue(const T &newValue)CCfits::Keyword
value(T &val) const CCfits::Keyword
write()CCfits::Keyword [virtual]
~Keyword()CCfits::Keyword [virtual]
Generated on Tue Dec 6 2011 16:12:58 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1PHDU.html0000644000225700000360000012517311667505546016723 0ustar cagordonlhea CCfits: CCfits::PHDU Class Reference
Public Member Functions | Protected Member Functions
CCfits::PHDU Class Reference

class representing the primary HDU for a FITS file. More...

#include <PHDU.h>

Inheritance diagram for CCfits::PHDU:
Inheritance diagram CCfits::HDU

List of all members.

Public Member Functions

virtual ~PHDU ()
 destructor
virtual PHDU * clone (FITSBase *p) const =0
 virtual copy constructor, to be implemented in subclasses.
bool extend () const
 Returns the value of the Primary's EXTEND keyword.
template<typename S >
void read (std::valarray< S > &image, long first, long nElements)
 read an image section starting at a specified pixel
template<typename S >
void read (std::valarray< S > &image, long first, long nElements, S *nullValue)
 read part of an image array, processing null values.
template<typename S >
void read (std::valarray< S > &image, const std::vector< long > &first, long nElements)
 read an image section starting at a location specified by an n-tuple
template<typename S >
void read (std::valarray< S > &image, const std::vector< long > &first, long nElements, S *nullValue)
 read part of an image array, processing null values.
template<typename S >
void read (std::valarray< S > &image, const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::vector< long > &stride)
 read an image subset
template<typename S >
void read (std::valarray< S > &image, const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::vector< long > &stride, S *nullValue)
 read an image subset into valarray image, processing null values
virtual void readData (bool readFlag=false, const std::vector< String > &keys=std::vector< String >())=0
 read primary HDU data
virtual void scale (double value)
 set the BSCALE keyword value for images (see warning for images of int type)
virtual double scale () const
 return the BSCALE keyword value
bool simple () const
 Returns the value of the Primary's SIMPLE keyword.
template<typename S >
void write (const std::vector< long > &first, long nElements, const std::valarray< S > &data, S *nullValue)
 Write a set of pixels to an image extension with the first pixel specified by an n-tuple, processing undefined data.
template<typename S >
void write (long first, long nElements, const std::valarray< S > &data, S *nullValue)
 write array to image starting with a specified pixel and allowing undefined data to be processed
template<typename S >
void write (const std::vector< long > &first, long nElements, const std::valarray< S > &data)
 write array starting from specified n-tuple, without undefined data processing
template<typename S >
void write (long first, long nElements, const std::valarray< S > &data)
 write array starting from specified pixel number, without undefined data processing
template<typename S >
void write (const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::vector< long > &stride, const std::valarray< S > &data)
 write a subset (generalize slice) of data to the image
virtual void zero (double value)
 set the BZERO keyword value for images (see warning for images of int type)
virtual double zero () const
 return the BZERO keyword value

Protected Member Functions

 PHDU (const PHDU &right)
 copy constructor
 PHDU (FITSBase *p, int bpix, int naxis, const std::vector< long > &axes)
 Writing Primary HDU constructor, called by PrimaryHDU<T> class.
 PHDU (FITSBase *p=0)
 Reading Primary HDU constructor.
virtual void initRead ()

Detailed Description

class representing the primary HDU for a FITS file.

A PHDU object is automatically instantiated and added to a FITS object when a FITS file is accessed in any way. If a new file is created without specifying the data type for the header, CCfits assumes that the file is to be used for table extensions and creates a dummy header. PHDU instances are only created by FITS ctors. In the first release of CCfits, the Primary cannot be changed once declared.

PHDU and ExtHDU provide the same interface to writing images: multiple overloads of the templated PHDU::read and PHDU::write operations provide for (a) writing image data specified in a number of ways [C-array, std::vector, std::valarray] and with input location specified by initial pixel, by n-tuple, and by rectangular subset [generalized slice]; (b) reading image data specified similarly to the write options into a std::valarray.

Todo:
Implement functions that allow replacement of the primary image

Constructor & Destructor Documentation

CCfits::PHDU::~PHDU ( ) [virtual]

destructor

Destructor

CCfits::PHDU::PHDU ( const PHDU &  right) [protected]

copy constructor

required for cloning primary HDUs when copying FITS files.

CCfits::PHDU::PHDU ( FITSBase *  p,
int  bpix,
int  naxis,
const std::vector< long > &  axes 
) [protected]

Writing Primary HDU constructor, called by PrimaryHDU<T> class.

Constructor used for creating new PHDU (i.e. for writing data to FITS). also doubles as default constructor since all arguments have default values, which are passed to the HDU constructor

CCfits::PHDU::PHDU ( FITSBase *  p = 0) [protected]

Reading Primary HDU constructor.

Constructor used when reading the primary HDU from an existing file. Does nothing except initialize, with the real work done by the subclass PrimaryHDU<T>.

Member Function Documentation

void CCfits::PHDU::initRead ( ) [protected, virtual]

Read image header and update fits pointer accordingly.

Private: called by ctor.

Implements CCfits::HDU.

template<typename S >
void CCfits::PHDU::read ( std::valarray< S > &  image,
long  first,
long  nElements,
S *  nullValue 
)

read part of an image array, processing null values.

Implicit data conversion is supported (i.e. user does not need to know the type of the data stored. A WrongExtensionType extension is thrown if *this is not an image.

Parameters:
imageThe receiving container, a std::valarray reference
firstThe first pixel from the array to read [a long value]
nElementsThe number of values to read
nullValueA pointer containing the value in the table to be considered as undefined. See cfitsio for details
template<typename S >
void CCfits::PHDU::read ( std::valarray< S > &  image,
const std::vector< long > &  first,
long  nElements,
S *  nullValue 
)

read part of an image array, processing null values.

As above except for

Parameters:
firsta vector<long> representing an n-tuple giving the coordinates in the image of the first pixel.
template<typename S >
void CCfits::PHDU::read ( std::valarray< S > &  image,
const std::vector< long > &  firstVertex,
const std::vector< long > &  lastVertex,
const std::vector< long > &  stride,
S *  nullValue 
)

read an image subset into valarray image, processing null values

The image subset is defined by two vertices and a stride indicating the 'denseness' of the values to be picked in each dimension (a stride = (1,1,1,...) means picking every pixel in every dimension, whereas stride = (2,2,2,...) means picking every other value in each dimension.

void CCfits::PHDU::readData ( bool  readFlag = false,
const std::vector< String > &  keys = std::vector<String>() 
) [pure virtual]

read primary HDU data

Called by FITS ctor, not intended for general use. parameters control how much gets read on initialization. An abstract function, implemented in the subclasses.

Parameters:
readFlagread the image data if true
keya vector of strings of keyword names to be read from the primary HDU
void CCfits::PHDU::scale ( double  value) [virtual]

set the BSCALE keyword value for images (see warning for images of int type)

For primary HDUs and image extensions, this will add (or update) the BSCALE keyword in the header. The new setting will affect future image array read/writes as described in section 4.7 Data Scaling of the CFITSIO manual. For table extensions this function does nothing.

WARNING: If the image contains integer-type data (as indicated by the bitpix() return value), the new scale and zero value combination must not be such that the scaled data would require a floating-point type (this uses the CFITSIO function fits_get_img_equivtype to make the determination). If this situation occurs, the function will throw a FitsException.

Reimplemented from CCfits::HDU.

template<typename S >
void CCfits::PHDU::write ( const std::vector< long > &  first,
long  nElements,
const std::valarray< S > &  data,
S *  nullValue 
)

Write a set of pixels to an image extension with the first pixel specified by an n-tuple, processing undefined data.

All the overloaded versions of PHDU::write perform operations on *this if it is an image and throw a WrongExtensionType exception if not. Where appropriate, alternate versions allow undefined data to be processed

Parameters:
firstan n-tuple of dimension equal to the image dimension specifying the first pixel in the range to be written
nElementsnumber of pixels to be written
dataarray of data to be written
nullValuepointer to null value (data with this value written as undefined; needs the BLANK keyword to have been specified).
template<typename S >
void CCfits::PHDU::write ( long  first,
long  nElements,
const std::valarray< S > &  data,
S *  nullValue 
)

write array to image starting with a specified pixel and allowing undefined data to be processed

parameters after the first are as for version with n-tuple specifying first element. these two version are equivalent, except that it is possible for the first pixel number to exceed the range of 32-bit integers, which is how long datatype is commonly implemented.

template<typename S >
void CCfits::PHDU::write ( const std::vector< long > &  firstVertex,
const std::vector< long > &  lastVertex,
const std::vector< long > &  stride,
const std::valarray< S > &  data 
)

write a subset (generalize slice) of data to the image

A generalized slice/subset is a subset of the image (e.g. one plane of a data cube of size <= the dimension of the cube). It is specified by two opposite vertices. The equivalent cfitsio call does not support undefined data processing so there is no version that allows a null value to be specified.

Parameters:
firstVertexThe coordinates specifying lower and upper vertices of the n-dimensional slice
lastVertex
stridePixels to skip in each to dimension, e.g. stride = (1,1,1,...) means picking every pixel in every dimension, whearas stride = (2,2,2,...) means picking every other value in each dimension.
dataThe data to be written
void CCfits::PHDU::zero ( double  value) [virtual]

set the BZERO keyword value for images (see warning for images of int type)

For primary HDUs and image extensions, this will add (or update) the BZERO keyword in the header. The new setting will affect future image array read/writes as described in section 4.7 Data Scaling of the CFITSIO manual. For table extensions this function does nothing.

WARNING: If the image contains integer-type data (as indicated by the bitpix() return value), the new scale and zero value combination must not be such that the scaled data would require a floating-point type (this uses the CFITSIO function fits_get_img_equivtype to make the determination). If this situation occurs, the function will throw a FitsException.

Reimplemented from CCfits::HDU.

The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1PHDU.png0000644000225700000360000000056611667502532016531 0ustar cagordonlhea‰PNG  IHDRVP´ÑrØPLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2IDATxíÝу P.&üÿ'ïJ-ÅE§Õ˜]bfSëBç^Ó2Ò’ÙÛX0‘sÍi•|¢—izÂö«´ÊMv¬Ÿ²=/€œÑNz—e¿‹•™øãBÖì@{³lÐ"øË»Ùy' Kz¼|ß +0n™ës¾Ⱦ›ùC?0Ê‘â§ÙRBܶ”7ˆ}Y'%K–,Y²dÿEÈHˆx.²·°j,AÝÏákë>Kš¨™V­lÏJÐ+†y¬¯J°¾Ï°:iVJh'µç¬ñ¿²2\Èúµm¿¦¬[³e¿³³¥ßÇÎ;Á.é6»Ù ¾o…•N°¾ï[øN ûZ6d|7§íSXæ"IEND®B`‚CCfits/html/classCCfits_1_1PHDU-members.html0000644000225700000360000004415311667502533020342 0ustar cagordonlhea CCfits: Member List
CCfits::PHDU Member List
This is the complete list of members for CCfits::PHDU, including all inherited members.
addKey(const String &name, T val, const String &comment)CCfits::HDU
addKey(const Keyword *inKeyword)CCfits::HDU
axes() const CCfits::HDU [inline]
axis(size_t index) const CCfits::HDU [inline]
bitpix() const CCfits::HDU [inline]
clone(FITSBase *p) const =0CCfits::PHDU [pure virtual]
comment() const CCfits::HDU [inline]
copyAllKeys(const HDU *inHdu)CCfits::HDU
deleteKey(const String &doomed)CCfits::HDU
extend() const CCfits::PHDU [inline]
fitsPointer() const CCfits::HDU
getChecksum() const CCfits::HDU
getComments()CCfits::HDU
getHistory()CCfits::HDU
HDU(const HDU &right)CCfits::HDU
HDU(FITSBase *p=0)CCfits::HDU [protected]
HDU(FITSBase *p, int bitpix, int naxis, const std::vector< long > &axes)CCfits::HDU [protected]
history() const CCfits::HDU [inline]
index(int value)CCfits::HDU [inline]
index() const CCfits::HDU [inline]
initRead()CCfits::PHDU [protected, virtual]
keyWord()CCfits::HDU [inline]
keyWord(const String &keyName)CCfits::HDU [inline]
keyWord() const CCfits::HDU [inline]
keyWord(const string &keyname) const CCfits::HDU [inline]
keywordCategories()CCfits::HDU [static]
makeThisCurrent() const CCfits::HDU [virtual]
naxes()CCfits::HDU [inline, protected]
operator!=(const HDU &right) const CCfits::HDU
operator==(const HDU &right) const CCfits::HDU
parent() const CCfits::HDU
PHDU(const PHDU &right)CCfits::PHDU [protected]
PHDU(FITSBase *p, int bpix, int naxis, const std::vector< long > &axes)CCfits::PHDU [protected]
PHDU(FITSBase *p=0)CCfits::PHDU [protected]
read(std::valarray< S > &image, long first, long nElements)CCfits::PHDU
read(std::valarray< S > &image, long first, long nElements, S *nullValue)CCfits::PHDU
read(std::valarray< S > &image, const std::vector< long > &first, long nElements)CCfits::PHDU
read(std::valarray< S > &image, const std::vector< long > &first, long nElements, S *nullValue)CCfits::PHDU
read(std::valarray< S > &image, const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::vector< long > &stride)CCfits::PHDU
read(std::valarray< S > &image, const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::vector< long > &stride, S *nullValue)CCfits::PHDU
readAllKeys()CCfits::HDU
readData(bool readFlag=false, const std::vector< String > &keys=std::vector< String >())=0CCfits::PHDU [pure virtual]
readKey(const String &keyName, T &val)CCfits::HDU
readKeys(std::vector< String > &keyNames, std::vector< T > &vals)CCfits::HDU
scale(double value)CCfits::PHDU [virtual]
scale() const CCfits::PHDU [virtual]
simple() const CCfits::PHDU [inline]
suppressScaling(bool toggle=true)CCfits::HDU
updateChecksum()CCfits::HDU
verifyChecksum() const CCfits::HDU
write(const std::vector< long > &first, long nElements, const std::valarray< S > &data, S *nullValue)CCfits::PHDU
write(long first, long nElements, const std::valarray< S > &data, S *nullValue)CCfits::PHDU
write(const std::vector< long > &first, long nElements, const std::valarray< S > &data)CCfits::PHDU
write(long first, long nElements, const std::valarray< S > &data)CCfits::PHDU
write(const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::vector< long > &stride, const std::valarray< S > &data)CCfits::PHDU
writeChecksum()CCfits::HDU
writeComment(const String &comment="Generic Comment")CCfits::HDU
writeDate()CCfits::HDU
writeHistory(const String &history="Generic History String")CCfits::HDU
zero(double value)CCfits::PHDU [virtual]
zero() const CCfits::PHDU [virtual]
~HDU()CCfits::HDU [protected, virtual]
~PHDU()CCfits::PHDU [virtual]
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Table.html0000644000225700000360000010525211667505546017206 0ustar cagordonlhea CCfits: CCfits::Table Class Reference
Classes | Public Member Functions | Protected Member Functions
CCfits::Table Class Reference

#include <Table.h>

Inheritance diagram for CCfits::Table:
Inheritance diagram CCfits::ExtHDU CCfits::HDU CCfits::AsciiTable CCfits::BinTable

List of all members.

Classes

class  NoSuchColumn
 Exception to be thrown on a failure to retrieve a column specified either by name or index number. More...

Public Member Functions

 Table (const Table &right)
 copy constructor
virtual ~Table ()
 destructor
virtual Column & column (const String &colName, bool caseSensitive=true) const
 return a reference to a Table column specified by name.
virtual Column & column (int colIndex) const
 return a reference to the column identified by colIndex
virtual const std::map< string,
Column * > & 		column () const
 return a reference to the array containing the columns.
virtual std::map< string,
Column * > & 		column ()
 return a reference to the array containing the columns.
virtual void deleteColumn (const String &columnName)
 delete a column in a Table extension by name.
void deleteRows (long first, long number=1)
 delete a range of rows in a table.
void deleteRows (const std::vector< long > &rowList)
 delete a set of rows in the table specified by an input array.
virtual long getRowsize () const
 return the optimal number of rows to read or write at a time
void insertRows (long first, long number=1)
 insert empty rows into the table
virtual int numCols () const
 return the number of Columns in the Table (the TFIELDS keyword).
virtual long rows () const
 return the number of rows in the table (NAXIS2).
void rows (long numRows)
 set the number of rows in the Table.
void updateRows ()
 update the number of rows in the table

Protected Member Functions

 Table (FITSBase *p, HduType xtype, const String &hduName, int rows, const std::vector< String > &columnName, const std::vector< String > &columnFmt, const std::vector< String > &columnUnit=std::vector< String >(), int version=1)
 Constructor to be used for creating new HDUs.
 Table (FITSBase *p, HduType xtype, const String &hduName=String(""), int version=1)
 Constructor to be called by operations that read Table specified by hduName and version.
 Table (FITSBase *p, HduType xtype, int number)
 Table constructor for getting Tables by number.
void init (bool readFlag=false, const std::vector< String > &keys=std::vector< String >())
void numCols (int value)
 set the number of Columns in the Table
virtual void setColumn (const String &colname, Column *value)
 set the column with name colname to the input value.

Detailed Description

Table is the abstract common interface to Binary and Ascii Table HDUs.

Table is a subclass of ExtHDU that contains an associative array of Column objects. It implements methods for reading and writing columns

Constructor & Destructor Documentation

CCfits::Table::Table ( FITSBase *  p,
HduType  xtype,
const String &  hduName,
int  rows,
const std::vector< String > &  columnName,
const std::vector< String > &  columnFmt,
const std::vector< String > &  columnUnit = std::vector<String>(),
int  version = 1 
) [protected]

Constructor to be used for creating new HDUs.

Parameters:
pThe FITS file in which to place the new HDU
xtypeAn HduType enumerator defined in CCfits.h for type of table (AsciiTbl or BinaryTbl)
hduNameThe name of this HDU extension
rowsThe number of rows in the new HDU (the value of the NAXIS2 keyword).
columnNamea vector of names for the columns.
columnFmtthe format strings for the columns
columnUnitthe units for the columns.
versiona version number
CCfits::Table::Table ( FITSBase *  p,
HduType  xtype,
int  number 
) [protected]

Table constructor for getting Tables by number.

Necessary since EXTNAME is a reserved not required keyword, and users may thus read FITS files without an extension name. Since an HDU is completely specified by extension number, this is part of the public interface.

Member Function Documentation

Column & CCfits::Table::column ( const String &  colName,
bool  caseSensitive = true 
) const [virtual]

return a reference to a Table column specified by name.

If the caseSensitive parameter is set to false, the search will be case-insensitive. The overridden base class implementation ExtHDU::column throws an exception, which is thus the action to be taken if self is an image extension

Exceptions:
WrongExtensionTypesee above

Reimplemented from CCfits::ExtHDU.

Column & CCfits::Table::column ( int  colIndex) const [virtual]

return a reference to the column identified by colIndex

Throws NoSuchColumn if the index is out of range -index must satisfy (1 <= index <= numCols() ).

N.B. the column number is assigned as 1-based, as in FORTRAN rather than 0-based as in C.

Exceptions:
Table::NoSuchColumnpasses colIndex to the diagnostic message printed when the exception is thrown

Reimplemented from CCfits::ExtHDU.

const std::map< string, Column * > & CCfits::Table::column ( ) const [inline, virtual]

return a reference to the array containing the columns.

This public version might be used to query the size of the column container in a routine that manipulates column table data.

Reimplemented from CCfits::ExtHDU.

std::map< string, Column * > & CCfits::Table::column ( ) [inline, virtual]

return a reference to the array containing the columns.

To be used in the implementation of subclasses.

void CCfits::Table::deleteColumn ( const String &  columnName) [virtual]

delete a column in a Table extension by name.

Parameters:
columnNameThe name of the column to be deleted.
Exceptions:
WrongExtensionTypeif extension is an image.

Reimplemented from CCfits::ExtHDU.

void CCfits::Table::deleteRows ( long  first,
long  number = 1 
)

delete a range of rows in a table.

In both this and the overloaded version which allows a selection of rows to be deleted, the cfitsio library is called first to perform the operation on the disk file, and then the FITS object is updated.

Parameters:
firstthe start row of the range
numberthe number of rows to delete; defaults to 1.
Exceptions:
FitsErrorthrown if the cfitsio call fails to return without error.
void CCfits::Table::deleteRows ( const std::vector< long > &  rowlist)

delete a set of rows in the table specified by an input array.

Parameters:
rowlistThe vector of row numbers to be deleted.
Exceptions:
FitsErrorthrown if the underlying cfitsio call fails to return without error.
long CCfits::Table::getRowsize ( ) const [virtual]

return the optimal number of rows to read or write at a time

A wrapper for the CFITSIO function fits_get_rowsize, useful for obtaining maximum I/O efficiency. This will throw if it is not called for a Table extension.

Reimplemented from CCfits::ExtHDU.

void CCfits::Table::init ( bool  readFlag = false,
const std::vector< String > &  keys = std::vector<String>() 
) [protected]

"Late Constructor." wrap-up of calls needed to construct a table. Reads header information and sets up the array of column objects in the table.

Protected function, provided to allow the implementation of extensions of the library.

void CCfits::Table::insertRows ( long  first,
long  number = 1 
)

insert empty rows into the table

Parameters:
firstthe start row of the range
numberthe number of rows to insert.
Exceptions:
FitsErrorthrown if the underlying cfitsio call fails to return without error.
void CCfits::Table::updateRows ( )

update the number of rows in the table

Called to force the Table to reset its internal "rows" attribute. public, but is called when needed internally.

The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Table.png0000644000225700000360000000165311667502533017017 0ustar cagordonlhea‰PNG  IHDRèÀ9ˆßPLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2:IDATxíÝÝ’£ †á|¤Šû¿ä=„qÕL0ÈÛ•ID›‡?O_ŸÄ»o|Ô×Ï ®g èY¨$™‚ääÜR—ZÅo­ÍRõе¿±úÞ„–í®=IÎ)ü$‡…ñ Ð8[õçÑP³“Ãd?:ÍÒ­/ Ý>u‹­ù„S·~Fh CCfits: Member List
CCfits::Table Member List
This is the complete list of members for CCfits::Table, including all inherited members.
addColumn(ValueType type, const String &columnName, long repeatWidth, const String &colUnit=String(""), long decimals=-1, size_t columnNumber=0)CCfits::ExtHDU [virtual]
addKey(const String &name, T val, const String &comment)CCfits::HDU
addKey(const Keyword *inKeyword)CCfits::HDU
axes() const CCfits::HDU [inline]
axis(size_t index) const CCfits::HDU [inline]
bitpix() const CCfits::HDU [inline]
clone(FITSBase *p) const =0CCfits::ExtHDU [pure virtual]
column(const String &colName, bool caseSensitive=true) const CCfits::Table [virtual]
column(int colIndex) const CCfits::Table [virtual]
column() const CCfits::Table [inline, virtual]
column()CCfits::Table [inline, virtual]
comment() const CCfits::HDU [inline]
copyAllKeys(const HDU *inHdu)CCfits::HDU
deleteColumn(const String &columnName)CCfits::Table [virtual]
deleteKey(const String &doomed)CCfits::HDU
deleteRows(long first, long number=1)CCfits::Table
deleteRows(const std::vector< long > &rowList)CCfits::Table
ExtHDU(const ExtHDU &right)CCfits::ExtHDU
ExtHDU(FITSBase *p, HduType xtype, const String &hduName, int version)CCfits::ExtHDU [protected]
ExtHDU(FITSBase *p, HduType xtype, const String &hduName, int bitpix, int naxis, const std::vector< long > &axes, int version)CCfits::ExtHDU [protected]
ExtHDU(FITSBase *p, HduType xtype, int number)CCfits::ExtHDU [protected]
fitsPointer() const CCfits::HDU
gcount() const CCfits::ExtHDU [inline, protected]
gcount(long value)CCfits::ExtHDU [inline, protected]
getChecksum() const CCfits::HDU
getComments()CCfits::HDU
getHistory()CCfits::HDU
getRowsize() const CCfits::Table [virtual]
HDU(const HDU &right)CCfits::HDU
HDU(FITSBase *p=0)CCfits::HDU [protected]
HDU(FITSBase *p, int bitpix, int naxis, const std::vector< long > &axes)CCfits::HDU [protected]
history() const CCfits::HDU [inline]
index(int value)CCfits::HDU [inline]
index() const CCfits::HDU [inline]
init(bool readFlag=false, const std::vector< String > &keys=std::vector< String >())CCfits::Table [protected]
insertRows(long first, long number=1)CCfits::Table
isCompressed() const CCfits::ExtHDU
keyWord()CCfits::HDU [inline]
keyWord(const String &keyName)CCfits::HDU [inline]
keyWord() const CCfits::HDU [inline]
keyWord(const string &keyname) const CCfits::HDU [inline]
keywordCategories()CCfits::HDU [static]
makeThisCurrent() const CCfits::ExtHDU [virtual]
name() const CCfits::ExtHDU [inline]
naxes()CCfits::HDU [inline, protected]
numCols() const CCfits::Table [inline, virtual]
numCols(int value)CCfits::Table [inline, protected]
operator!=(const HDU &right) const CCfits::HDU
operator==(const HDU &right) const CCfits::HDU
parent() const CCfits::HDU
pcount() const CCfits::ExtHDU [inline, protected]
pcount(long value)CCfits::ExtHDU [inline, protected]
read(std::valarray< S > &image)CCfits::ExtHDU
read(std::valarray< S > &image, long first, long nElements, S *nullValue)CCfits::ExtHDU
read(std::valarray< S > &image, const std::vector< long > &first, long nElements, S *nullValue)CCfits::ExtHDU
read(std::valarray< S > &image, const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::vector< long > &stride)CCfits::ExtHDU
read(std::valarray< S > &image, long first, long nElements)CCfits::ExtHDU
read(std::valarray< S > &image, const std::vector< long > &first, long nElements)CCfits::ExtHDU
read(std::valarray< S > &image, const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::vector< long > &stride, S *nullValue)CCfits::ExtHDU
readAllKeys()CCfits::HDU
readData(bool readFlag=false, const std::vector< String > &keys=std::vector< String >())=0CCfits::ExtHDU [pure virtual]
readHduName(const fitsfile *fptr, int hduIndex, String &hduName, int &hduVersion)CCfits::ExtHDU [static]
readKey(const String &keyName, T &val)CCfits::HDU
readKeys(std::vector< String > &keyNames, std::vector< T > &vals)CCfits::HDU
rows() const CCfits::Table [inline, virtual]
rows(long numRows)CCfits::Table [inline]
scale() const CCfits::HDU [inline, virtual]
scale(double value)CCfits::HDU [inline, virtual]
setColumn(const String &colname, Column *value)CCfits::Table [protected, virtual]
suppressScaling(bool toggle=true)CCfits::HDU
Table(const Table &right)CCfits::Table
Table(FITSBase *p, HduType xtype, const String &hduName, int rows, const std::vector< String > &columnName, const std::vector< String > &columnFmt, const std::vector< String > &columnUnit=std::vector< String >(), int version=1)CCfits::Table [protected]
Table(FITSBase *p, HduType xtype, const String &hduName=String(""), int version=1)CCfits::Table [protected]
Table(FITSBase *p, HduType xtype, int number)CCfits::Table [protected]
updateChecksum()CCfits::HDU
updateRows()CCfits::Table
verifyChecksum() const CCfits::HDU
version() const CCfits::ExtHDU [inline]
version(int value)CCfits::ExtHDU [inline]
write(const std::vector< long > &first, long nElements, const std::valarray< S > &data, S *nullValue)CCfits::ExtHDU
write(long first, long nElements, const std::valarray< S > &data, S *nullValue)CCfits::ExtHDU
write(const std::vector< long > &first, long nElements, const std::valarray< S > &data)CCfits::ExtHDU
write(long first, long nElements, const std::valarray< S > &data)CCfits::ExtHDU
write(const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::valarray< S > &data)CCfits::ExtHDU
writeChecksum()CCfits::HDU
writeComment(const String &comment="Generic Comment")CCfits::HDU
writeDate()CCfits::HDU
writeHistory(const String &history="Generic History String")CCfits::HDU
xtension() const CCfits::ExtHDU [inline, protected]
xtension(HduType value)CCfits::ExtHDU [inline, protected]
zero() const CCfits::HDU [inline, virtual]
zero(double value)CCfits::HDU [inline, virtual]
~ExtHDU()CCfits::ExtHDU [virtual]
~HDU()CCfits::HDU [protected, virtual]
~Table()CCfits::Table [virtual]
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Table_1_1NoSuchColumn.html0000644000225700000360000002220311667505546022136 0ustar cagordonlhea CCfits: CCfits::Table::NoSuchColumn Class Reference
Public Member Functions
CCfits::Table::NoSuchColumn Class Reference
FITS Exceptions

Exception to be thrown on a failure to retrieve a column specified either by name or index number. More...

#include <Table.h>

Inheritance diagram for CCfits::Table::NoSuchColumn:
Inheritance diagram CCfits::FitsException

List of all members.

Public Member Functions

 NoSuchColumn (const String &name, bool silent=true)
 Exception ctor for exception thrown if the requested column (specified by name) is not present.
 NoSuchColumn (int index, bool silent=true)
 Exception ctor for exception thrown if the requested column (specified by name) is not present.

Detailed Description

Exception to be thrown on a failure to retrieve a column specified either by name or index number.

When a Table object is created, the header is read and a column object created for each column defined. Thus id this exception is thrown the column requested does not exist in the HDU (note that the column can easily exist and not contain any data since the user controls whether the column will be read when the FITS object is instantiated).

It is expected that the index number calls will be primarily internal. The underlying implementation makes lookup by name more efficient.

The exception has two variants, which take either an integer or a string as parameter. These are used according to the accessor that threw them, either by name or index.

Constructor & Destructor Documentation

CCfits::Table::NoSuchColumn::NoSuchColumn ( const String &  name,
bool  silent = true 
)

Exception ctor for exception thrown if the requested column (specified by name) is not present.

Message: Fits Error: cannot find Column named: name is printed.

Parameters:
namethe requested column name
silentif true, print message whether FITS::verboseMode is set or not.
CCfits::Table::NoSuchColumn::NoSuchColumn ( int  index,
bool  silent = true 
)

Exception ctor for exception thrown if the requested column (specified by name) is not present.

Message: Fits Error: column not present - Column number index is printed.

Parameters:
indexthe requested column number
silentif true, print message whether FITS::verboseMode is set or not.
The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1Table_1_1NoSuchColumn.png0000644000225700000360000000110211667502533021742 0ustar cagordonlhea‰PNG  IHDR°PŽ-îPLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2ÑIDATxíÙnÄ EqFÊÿrÌr½d™6hÄô¢H ì^òZ^‹òÚ–&ð?1 ‘M¶Mef—¨¸kšìÌx0ôg`e„Euà“å ”÷hïïõuþº4x5©'Û$›n} = Ü^;~ãN~ãM¶9ì4=‡ý{üp—yÀyJ T÷âüp–â ‰)‘=ôÃÀy—iz–Ãõà~8ôaôóÙh4ü']¢öô.{xÎx»øÛ;Là/^l”YcŸf™ÀÊ»/F¼ð¾/F¼0» L`˜À&0 L`˜À&ðçe±Qd­À˜À_,"ºn ­H{¡Vªý8N`ÕIñŒÛ´ç/8€•0FpÜ9Û©¡ló5°´""¥H"¤>Š¨Jº­)¢¡Ô(asŸúº?§ÌgC¡—2>º'6ŽŒ‡uCMK ø=à4õ¨1Ò “HçÀ‰ñ[À)a-ûZ„x&÷› l+> ®‹‚Æ:~ 8ï6{àÌfÛ’;é±ÃKàЇ‘É9®-±Kàõ wØÖ½Ãi¡H¯ùk&0 LàÏ/6~jª%‚™p[âIEND®B`‚CCfits/html/classCCfits_1_1Table_1_1NoSuchColumn-members.html0000644000225700000360000000727311667502533023571 0ustar cagordonlhea CCfits: Member List
CCfits::Table::NoSuchColumn Member List
This is the complete list of members for CCfits::Table::NoSuchColumn, including all inherited members.
FitsException(const string &msg, bool &silent)CCfits::FitsException
message() const CCfits::FitsException [inline]
NoSuchColumn(const String &name, bool silent=true)CCfits::Table::NoSuchColumn
NoSuchColumn(int index, bool silent=true)CCfits::Table::NoSuchColumn
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FITSUtil_1_1auto__array__ptr.html0000644000225700000360000002545011667502533023466 0ustar cagordonlhea CCfits: CCfits::FITSUtil::auto_array_ptr< X > Class Template Reference
Public Member Functions | Static Public Member Functions
CCfits::FITSUtil::auto_array_ptr< X > Class Template Reference

A class that mimics the std:: library auto_ptr class, but works with arrays. More...

#include <FITSUtil.h>

List of all members.

Public Member Functions

 auto_array_ptr (X *p=0) throw ()
 constructor. allows creation of pointer to null, can be modified by reset()
 auto_array_ptr (auto_array_ptr< X > &right) throw ()
 copy constructor
 ~auto_array_ptr ()
 destructor.
X * get () const
 return a token for the underlying content of *this
X & operator* () throw ()
 deference operator
void operator= (auto_array_ptr< X > &right)
 assignment operator: transfer of ownership semantics
X & operator[] (size_t i) throw ()
 return a reference to the ith element of the array
X operator[] (size_t i) const throw ()
 return a copy of the ith element of the array
X * release () throw ()
 return underlying content of *this, transferring memory ownership
X * reset (X *p) throw ()
 change the content of the auto_array_ptr to p

Static Public Member Functions

static void remove (X *&x)
 utility function to delete the memory owned by x and set it to null.

Detailed Description

template<typename X>
class CCfits::FITSUtil::auto_array_ptr< X >

A class that mimics the std:: library auto_ptr class, but works with arrays.

This code was written by Jack Reeves and first appeared C++ Report, March 1996 edition. Although some authors think one shouldn't need such a contrivance, there seems to be a need for it when wrapping C code.

Usage: replace

float* f = new float[200];

with

FITSUtil::auto_array_ptr<float> f(new float[200]);

Then the memory will be managed correctly in the presence of exceptions, and delete will be called automatically for f when leaving scope.

The documentation for this class was generated from the following file:
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FITSUtil_1_1auto__array__ptr-members.html0000644000225700000360000001361611667502533025117 0ustar cagordonlhea CCfits: Member List
CCfits::FITSUtil::auto_array_ptr< X > Member List
This is the complete list of members for CCfits::FITSUtil::auto_array_ptr< X >, including all inherited members.
auto_array_ptr(X *p=0)CCfits::FITSUtil::auto_array_ptr< X > [explicit]
auto_array_ptr(auto_array_ptr< X > &right)CCfits::FITSUtil::auto_array_ptr< X > [explicit]
get() const CCfits::FITSUtil::auto_array_ptr< X >
operator*()CCfits::FITSUtil::auto_array_ptr< X >
operator=(auto_array_ptr< X > &right)CCfits::FITSUtil::auto_array_ptr< X >
operator[](size_t i)CCfits::FITSUtil::auto_array_ptr< X >
operator[](size_t i) const CCfits::FITSUtil::auto_array_ptr< X >
release()CCfits::FITSUtil::auto_array_ptr< X >
remove(X *&x)CCfits::FITSUtil::auto_array_ptr< X > [static]
reset(X *p)CCfits::FITSUtil::auto_array_ptr< X >
~auto_array_ptr()CCfits::FITSUtil::auto_array_ptr< X >
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/structCCfits_1_1FITSUtil_1_1CAarray.html0000644000225700000360000001060011667502533021665 0ustar cagordonlhea CCfits: CCfits::FITSUtil::CAarray< T > Class Template Reference
Public Member Functions
CCfits::FITSUtil::CAarray< T > Class Template Reference

function object returning C array from a valarray. see CVarray for details More...

#include <FITSUtil.h>

List of all members.

Public Member Functions

T * operator() (const std::valarray< T > &inArray)
 operator returning C array for use with image data.

Detailed Description

template<typename T>
class CCfits::FITSUtil::CAarray< T >

function object returning C array from a valarray. see CVarray for details

The documentation for this class was generated from the following file:
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FITSUtil_1_1CAarray-members.html0000644000225700000360000000553611667502533023112 0ustar cagordonlhea CCfits: Member List
CCfits::FITSUtil::CAarray< T > Member List
This is the complete list of members for CCfits::FITSUtil::CAarray< T >, including all inherited members.
operator()(const std::valarray< T > &inArray)CCfits::FITSUtil::CAarray< T >
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/structCCfits_1_1FITSUtil_1_1CVAarray.html0000644000225700000360000001072211667502533022020 0ustar cagordonlhea CCfits: CCfits::FITSUtil::CVAarray< T > Class Template Reference
Public Member Functions
CCfits::FITSUtil::CVAarray< T > Class Template Reference

function object returning C array from a vector of valarrays. see CVarray for details More...

#include <FITSUtil.h>

List of all members.

Public Member Functions

T * operator() (const std::vector< std::valarray< T > > &inArray)
 operator returning C array for use with vector column data.

Detailed Description

template<typename T>
class CCfits::FITSUtil::CVAarray< T >

function object returning C array from a vector of valarrays. see CVarray for details

The documentation for this class was generated from the following file:
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FITSUtil_1_1CVAarray-members.html0000644000225700000360000000557311667502533023241 0ustar cagordonlhea CCfits: Member List
CCfits::FITSUtil::CVAarray< T > Member List
This is the complete list of members for CCfits::FITSUtil::CVAarray< T >, including all inherited members.
operator()(const std::vector< std::valarray< T > > &inArray)CCfits::FITSUtil::CVAarray< T >
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/structCCfits_1_1FITSUtil_1_1CVarray.html0000644000225700000360000001215011667502533021714 0ustar cagordonlhea CCfits: CCfits::FITSUtil::CVarray< T > Class Template Reference
Public Member Functions
CCfits::FITSUtil::CVarray< T > Class Template Reference

Function object class for returning C arrays from standard library objects used in the FITS library implementation. More...

#include <FITSUtil.h>

List of all members.

Public Member Functions

T * operator() (const std::vector< T > &inArray)
 operator returning C array for use with scalar column data.

Detailed Description

template<typename T>
class CCfits::FITSUtil::CVarray< T >

Function object class for returning C arrays from standard library objects used in the FITS library implementation.

There are 3 versions which convert std::vector<T>, std::valarray<T>, and std::vector<std::valarray<T> > objects to pointers to T, called CVarray, CAarray, and CVAarray.

An alternative function, CharArray, is provided to deal with the special case of vector string arrays.

The documentation for this class was generated from the following file:
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FITSUtil_1_1CVarray-members.html0000644000225700000360000000556211667502533023136 0ustar cagordonlhea CCfits: Member List
CCfits::FITSUtil::CVarray< T > Member List
This is the complete list of members for CCfits::FITSUtil::CVarray< T >, including all inherited members.
operator()(const std::vector< T > &inArray)CCfits::FITSUtil::CVarray< T > [inline]
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/structCCfits_1_1FITSUtil_1_1MatchName.html0000644000225700000360000000725011667502533022207 0ustar cagordonlhea CCfits: CCfits::FITSUtil::MatchName< T > Class Template Reference
CCfits::FITSUtil::MatchName< T > Class Template Reference

predicate for classes that have a name attribute; match input string with instance name. More...

#include <FITSUtil.h>

List of all members.

Detailed Description

template<class T>
class CCfits::FITSUtil::MatchName< T >

predicate for classes that have a name attribute; match input string with instance name.

Usage: MatchName<NamedClass> Ex;

list<NamedClass> ListObject;

... ...

find_if(ListObject.begin(),ListObject().end(),bind2nd(Ex,"needle"));

Since most of the classes within CCfits are not implemented with lists, these functions are now of little direct use.

The documentation for this class was generated from the following file:
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/files.html0000644000225700000360000001341611667502533014470 0ustar cagordonlhea CCfits: File List
File List
Here is a list of all documented files with brief descriptions:
AsciiTable.h [code]
BinTable.h [code]
CCfits.h [code]
Column.h [code]
ColumnCreator.h [code]
ColumnData.h [code]
ColumnT.h [code]
ColumnVectorData.h [code]
config.h [code]
ExtHDU.h [code]
ExtHDUT.h [code]
FITS.h [code]
FITSBase.h [code]
FitsError.h [code]
FITSUtil.h [code]
FITSUtilT.h [code]
HDU.h [code]
HDUCreator.h [code]
Image.h [code]
ImageExt.h [code]
KeyData.h [code]
Keyword.h [code]
KeywordCreator.h [code]
KeywordT.h [code]
MSconfig.h [code]
NewColumn.h [code]
NewKeyword.h [code]
PHDU.h [code]
PHDUT.h [code]
PrimaryHDU.h [code]
Table.h [code]
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/namespaceFITSUtil.html0000644000225700000360000000552211667502533016645 0ustar cagordonlhea CCfits: FITSUtil Namespace Reference
FITSUtil Namespace Reference

FITSUtil is a namespace containing functions used internally by CCfits, but which might be of use for other applications. More...

Detailed Description

FITSUtil is a namespace containing functions used internally by CCfits, but which might be of use for other applications.

Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FITSUtil_1_1MatchName-members.html0000644000225700000360000000506011667502533023415 0ustar cagordonlhea CCfits: Member List
CCfits::FITSUtil::MatchName< T > Member List
This is the complete list of members for CCfits::FITSUtil::MatchName< T >, including all inherited members.
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/structCCfits_1_1FITSUtil_1_1MatchNum.html0000644000225700000360000000726111667502533022070 0ustar cagordonlhea CCfits: CCfits::FITSUtil::MatchNum< T > Class Template Reference
CCfits::FITSUtil::MatchNum< T > Class Template Reference

predicate for classes that have an index attribute; match input index with instance value. More...

#include <FITSUtil.h>

List of all members.

Detailed Description

template<class T>
class CCfits::FITSUtil::MatchNum< T >

predicate for classes that have an index attribute; match input index with instance value.

Usage: MatchName<IndexedClass> Ex;

list<NamedClass> ListObject;

... ...

find_if(ListObject.begin(),ListObject().end(),bind2nd(Ex,5));

Since most of the classes within CCfits are implemented with std::maps rather than lists, these functions are now of little direct use.

The documentation for this class was generated from the following file:
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FITSUtil_1_1MatchNum-members.html0000644000225700000360000000505311667502533023276 0ustar cagordonlhea CCfits: Member List
CCfits::FITSUtil::MatchNum< T > Member List
This is the complete list of members for CCfits::FITSUtil::MatchNum< T >, including all inherited members.
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/structCCfits_1_1FITSUtil_1_1MatchPtrName.html0000644000225700000360000000704311667502533022675 0ustar cagordonlhea CCfits: CCfits::FITSUtil::MatchPtrName< T > Class Template Reference
CCfits::FITSUtil::MatchPtrName< T > Class Template Reference

as for MatchName, only with the input class a pointer. More...

#include <FITSUtil.h>

List of all members.

Detailed Description

template<class T>
class CCfits::FITSUtil::MatchPtrName< T >

as for MatchName, only with the input class a pointer.

The documentation for this class was generated from the following file:
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FITSUtil_1_1MatchPtrName-members.html0000644000225700000360000000507711667502533024113 0ustar cagordonlhea CCfits: Member List
CCfits::FITSUtil::MatchPtrName< T > Member List
This is the complete list of members for CCfits::FITSUtil::MatchPtrName< T >, including all inherited members.
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/structCCfits_1_1FITSUtil_1_1MatchPtrNum.html0000644000225700000360000000703311667502533022553 0ustar cagordonlhea CCfits: CCfits::FITSUtil::MatchPtrNum< T > Class Template Reference
CCfits::FITSUtil::MatchPtrNum< T > Class Template Reference

as for MatchNum, only with the input class a pointer. More...

#include <FITSUtil.h>

List of all members.

Detailed Description

template<class T>
class CCfits::FITSUtil::MatchPtrNum< T >

as for MatchNum, only with the input class a pointer.

The documentation for this class was generated from the following file:
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FITSUtil_1_1MatchPtrNum-members.html0000644000225700000360000000507211667502533023765 0ustar cagordonlhea CCfits: Member List
CCfits::FITSUtil::MatchPtrNum< T > Member List
This is the complete list of members for CCfits::FITSUtil::MatchPtrNum< T >, including all inherited members.
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/structCCfits_1_1FITSUtil_1_1MatchType.html0000644000225700000360000000750311667502533022251 0ustar cagordonlhea CCfits: CCfits::FITSUtil::MatchType< T > Class Template Reference
CCfits::FITSUtil::MatchType< T > Class Template Reference

function object that returns the FITS ValueType corresponding to an input intrinsic type More...

#include <FITSUtil.h>

List of all members.

Detailed Description

template<typename T>
class CCfits::FITSUtil::MatchType< T >

function object that returns the FITS ValueType corresponding to an input intrinsic type

This is particularly useful inside templated class instances where calls to cfitsio need to supply a value type. With this function one can extract the value type from the class type.

usage:

MatchType<T> type;

ValueType dataType = type();

Uses run-time type information (RTTI) methods.

The documentation for this class was generated from the following file:
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FITSUtil_1_1MatchType-members.html0000644000225700000360000000506011667502533023456 0ustar cagordonlhea CCfits: Member List
CCfits::FITSUtil::MatchType< T > Member List
This is the complete list of members for CCfits::FITSUtil::MatchType< T >, including all inherited members.
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FITSUtil_1_1UnrecognizedType.html0000644000225700000360000001036011667505546023434 0ustar cagordonlhea CCfits: CCfits::FITSUtil::UnrecognizedType Class Reference
CCfits::FITSUtil::UnrecognizedType Class Reference
FITS Exceptions

exception thrown by MatchType if it encounters data type incompatible with cfitsio. More...

#include <FITSUtil.h>

Inheritance diagram for CCfits::FITSUtil::UnrecognizedType:
Inheritance diagram CCfits::FitsException

List of all members.

Detailed Description

exception thrown by MatchType if it encounters data type incompatible with cfitsio.

The documentation for this class was generated from the following files:
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/classCCfits_1_1FITSUtil_1_1UnrecognizedType.png0000644000225700000360000000120411667502533023242 0ustar cagordonlhea‰PNG  IHDRÏP‰oÑûPLTEÿÿÿèìõuÂÀÀÀ‰ÜtRNSÿÿÿÿÿÿÿÕÊT2IDATxí]Žë …ãTÊþ—|ÀæÃmZ¡ƒ2Åüá^×^íx;5ò‡OYSõ]i˜Öñ ò$ópkßéÝ¡—½´â)º†1Çãó'¸f"Tþàè&d­ÛðÏ[<ãxËœåÑš2æÑX—6÷ƒ1ÇÓJ¯Q=˜ñï CCfits: Member List
CCfits::FITSUtil::UnrecognizedType Member List
This is the complete list of members for CCfits::FITSUtil::UnrecognizedType, including all inherited members.
FitsException(const string &msg, bool &silent)CCfits::FitsException
message() const CCfits::FitsException [inline]
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/namespacemembers.html0000644000225700000360000000473111667502533016675 0ustar cagordonlhea CCfits: Namespace Members
Here is a list of all documented namespace members with links to the namespaces they belong to:
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/namespacemembers_func.html0000644000225700000360000000436611667502533017714 0ustar cagordonlhea CCfits: Namespace Members
 
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/html/namespacemembers_enum.html0000644000225700000360000000435511667502533017723 0ustar cagordonlhea CCfits: Namespace Members
 
Generated on Tue Dec 6 2011 16:12:59 for CCfits by   doxygen 1.7.5.1
CCfits/CCfits-2.4.pdf0000644000225700000360000426214611667511110013704 0ustar cagordonlhea%PDF-1.4 5 0 obj << /S /GoTo /D (section.1) >> endobj 8 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 9 0 obj << /S /GoTo /D (subsection.1.1) >> endobj 12 0 obj (\376\377\000I\000n\000t\000r\000o\000d\000u\000c\000t\000i\000o\000n) endobj 13 0 obj << /S /GoTo /D (subsection.1.2) >> endobj 16 0 obj (\376\377\000A\000b\000o\000u\000t\000\040\000t\000h\000i\000s\000\040\000M\000a\000n\000u\000a\000l) endobj 17 0 obj << /S /GoTo /D (subsection.1.3) >> endobj 20 0 obj (\376\377\000R\000e\000l\000e\000a\000s\000e\000\040\000N\000o\000t\000e\000s\000\040\000f\000o\000r\000\040\000V\000e\000r\000s\000i\000o\000n\000\040\0002\000.\0004\000\040\000D\000e\000c\000\040\0002\0000\0001\0001) endobj 21 0 obj << /S /GoTo /D (subsection.1.4) >> endobj 24 0 obj (\376\377\000R\000e\000l\000e\000a\000s\000e\000\040\000N\000o\000t\000e\000s\000\040\000F\000o\000r\000\040\000V\000e\000r\000s\000i\000o\000n\000\040\0002\000.\0003\000\040\000N\000o\000v\000\040\0002\0000\0001\0000) endobj 25 0 obj << /S /GoTo /D (subsection.1.5) >> endobj 28 0 obj (\376\377\000R\000e\000l\000e\000a\000s\000e\000\040\000N\000o\000t\000e\000s\000\040\000F\000o\000r\000\040\000V\000e\000r\000s\000i\000o\000n\000\040\0002\000.\0002\000\040\000S\000e\000p\000\040\0002\0000\0000\0009) endobj 29 0 obj << /S /GoTo /D (subsection.1.6) >> endobj 32 0 obj (\376\377\000A\000u\000t\000h\000o\000r\000s\000\040\000a\000n\000d\000\040\000A\000c\000k\000n\000o\000w\000l\000e\000d\000g\000e\000m\000e\000n\000t\000s) endobj 33 0 obj << /S /GoTo /D (section.2) >> endobj 36 0 obj (\376\377\000I\000n\000s\000t\000a\000l\000l\000i\000n\000g\000\040\000t\000h\000e\000\040\000P\000a\000c\000k\000a\000g\000e) endobj 37 0 obj << /S /GoTo /D (subsection.2.1) >> endobj 40 0 obj (\376\377\000P\000l\000a\000t\000f\000o\000r\000m\000s) endobj 41 0 obj << /S /GoTo /D (subsection.2.2) >> endobj 44 0 obj (\376\377\000B\000u\000i\000l\000d\000i\000n\000g) endobj 45 0 obj << /S /GoTo /D (subsubsection.2.2.1) >> endobj 48 0 obj (\376\377\000I\000n\000s\000t\000r\000u\000c\000t\000i\000o\000n\000s\000\040\000f\000o\000r\000\040\000B\000u\000i\000l\000d\000i\000n\000g\000\040\000C\000C\000f\000i\000t\000s\000\040\000o\000n\000\040\000U\000N\000I\000X\000-\000l\000i\000k\000e\000\040\000p\000l\000a\000t\000f\000o\000r\000m\000s\000:) endobj 49 0 obj << /S /GoTo /D (subsubsection.2.2.2) >> endobj 52 0 obj (\376\377\000I\000n\000s\000t\000r\000u\000c\000t\000i\000o\000n\000s\000\040\000f\000o\000r\000\040\000M\000i\000c\000r\000o\000s\000f\000t\000\040\000W\000i\000n\000d\000o\000w\000s\000\040\000b\000u\000i\000l\000d\000:) endobj 53 0 obj << /S /GoTo /D (section.3) >> endobj 56 0 obj (\376\377\000I\000m\000p\000l\000e\000m\000e\000n\000t\000a\000t\000i\000o\000n\000\040\000N\000o\000t\000e\000s) endobj 57 0 obj << /S /GoTo /D (section.4) >> endobj 60 0 obj (\376\377\000X\000s\000p\000e\000c\000\040\000a\000n\000d\000\040\000C\000C\000f\000i\000t\000s) endobj 61 0 obj << /S /GoTo /D (subsection.4.1) >> endobj 64 0 obj (\376\377\000A\000b\000o\000u\000t\000\040\000X\000S\000P\000E\000C) endobj 65 0 obj << /S /GoTo /D (subsection.4.2) >> endobj 68 0 obj (\376\377\000N\000e\000w\000\040\000D\000a\000t\000a\000\040\000F\000o\000r\000m\000a\000t\000s) endobj 69 0 obj << /S /GoTo /D (subsection.4.3) >> endobj 72 0 obj (\376\377\000M\000o\000d\000u\000l\000a\000r\000i\000t\000y) endobj 73 0 obj << /S /GoTo /D (section.5) >> endobj 76 0 obj (\376\377\000G\000e\000t\000t\000i\000n\000g\000\040\000S\000t\000a\000r\000t\000e\000d) endobj 77 0 obj << /S /GoTo /D (subsection.5.1) >> endobj 80 0 obj (\376\377\000D\000r\000i\000v\000e\000r\000\040\000P\000r\000o\000g\000r\000a\000m) endobj 81 0 obj << /S /GoTo /D (section.6) >> endobj 84 0 obj (\376\377\000W\000r\000i\000t\000i\000n\000g\000\040\000P\000r\000i\000m\000a\000r\000y\000\040\000I\000m\000a\000g\000e\000s\000\040\000a\000n\000d\000\040\000I\000m\000a\000g\000e\000\040\000E\000x\000t\000e\000n\000s\000i\000o\000n\000s) endobj 85 0 obj << /S /GoTo /D (section.7) >> endobj 88 0 obj (\376\377\000C\000r\000e\000a\000t\000i\000n\000g\000\040\000a\000n\000d\000\040\000W\000r\000i\000t\000i\000n\000g\000\040\000t\000o\000\040\000a\000n\000\040\000A\000s\000c\000i\000i\000\040\000T\000a\000b\000l\000e\000\040\000E\000x\000t\000e\000n\000s\000i\000o\000n) endobj 89 0 obj << /S /GoTo /D (section.8) >> endobj 92 0 obj (\376\377\000C\000r\000e\000a\000t\000i\000n\000g\000\040\000a\000n\000d\000\040\000W\000r\000i\000t\000i\000n\000g\000\040\000t\000o\000\040\000a\000\040\000B\000i\000n\000a\000r\000y\000\040\000T\000a\000b\000l\000e\000\040\000E\000x\000t\000e\000n\000s\000i\000o\000n) endobj 93 0 obj << /S /GoTo /D (section.9) >> endobj 96 0 obj (\376\377\000C\000o\000p\000y\000i\000n\000g\000\040\000a\000n\000\040\000E\000x\000t\000e\000n\000s\000i\000o\000n\000\040\000b\000e\000t\000w\000e\000e\000n\000\040\000F\000i\000l\000e\000s) endobj 97 0 obj << /S /GoTo /D (section.10) >> endobj 100 0 obj (\376\377\000S\000e\000l\000e\000c\000t\000i\000n\000g\000\040\000T\000a\000b\000l\000e\000\040\000D\000a\000t\000a) endobj 101 0 obj << /S /GoTo /D (section.11) >> endobj 104 0 obj (\376\377\000R\000e\000a\000d\000i\000n\000g\000\040\000H\000e\000a\000d\000e\000r\000\040\000i\000n\000f\000o\000r\000m\000a\000t\000i\000o\000n\000\040\000f\000r\000o\000m\000\040\000a\000\040\000H\000D\000U) endobj 105 0 obj << /S /GoTo /D (section.12) >> endobj 108 0 obj (\376\377\000R\000e\000a\000d\000i\000n\000g\000\040\000a\000n\000\040\000I\000m\000a\000g\000e) endobj 109 0 obj << /S /GoTo /D (section.13) >> endobj 112 0 obj (\376\377\000R\000e\000a\000d\000i\000n\000g\000\040\000a\000\040\000T\000a\000b\000l\000e\000\040\000E\000x\000t\000e\000n\000s\000i\000o\000n) endobj 113 0 obj << /S /GoTo /D (section.14) >> endobj 116 0 obj (\376\377\000R\000e\000a\000d\000i\000n\000g\000\040\000w\000i\000t\000h\000\040\000E\000x\000t\000e\000n\000d\000e\000d\000\040\000F\000i\000l\000e\000\040\000N\000a\000m\000e\000\040\000S\000y\000n\000t\000a\000x) endobj 117 0 obj << /S /GoTo /D (section.15) >> endobj 120 0 obj (\376\377\000W\000h\000a\000t\000'\000s\000\040\000P\000r\000e\000s\000e\000n\000t\000,\000\040\000W\000h\000a\000t\000'\000s\000\040\000M\000i\000s\000s\000i\000n\000g\000,\000\040\000a\000n\000d\000\040\000C\000a\000l\000l\000i\000n\000g\000\040\000C\000F\000I\000T\000S\000I\000O) endobj 121 0 obj << /S /GoTo /D (subsection.15.1) >> endobj 124 0 obj (\376\377\000W\000h\000a\000t\000'\000s\000\040\000N\000o\000t\000\040\000P\000r\000e\000s\000e\000n\000t) endobj 125 0 obj << /S /GoTo /D (subsection.15.2) >> endobj 128 0 obj (\376\377\000C\000a\000l\000l\000i\000n\000g\000\040\000C\000F\000I\000T\000S\000I\000O) endobj 129 0 obj << /S /GoTo /D (section.16) >> endobj 132 0 obj (\376\377\000P\000r\000e\000v\000i\000o\000u\000s\000\040\000R\000e\000l\000e\000a\000s\000e\000\040\000N\000o\000t\000e\000s) endobj 133 0 obj << /S /GoTo /D (section.17) >> endobj 136 0 obj (\376\377\000T\000o\000d\000o\000\040\000L\000i\000s\000t) endobj 137 0 obj << /S /GoTo /D (section.18) >> endobj 140 0 obj (\376\377\000M\000o\000d\000u\000l\000e\000\040\000I\000n\000d\000e\000x) endobj 141 0 obj << /S /GoTo /D (subsection.18.1) >> endobj 144 0 obj (\376\377\000M\000o\000d\000u\000l\000e\000s) endobj 145 0 obj << /S /GoTo /D (section.19) >> endobj 148 0 obj (\376\377\000N\000a\000m\000e\000s\000p\000a\000c\000e\000\040\000I\000n\000d\000e\000x) endobj 149 0 obj << /S /GoTo /D (subsection.19.1) >> endobj 152 0 obj (\376\377\000N\000a\000m\000e\000s\000p\000a\000c\000e\000\040\000L\000i\000s\000t) endobj 153 0 obj << /S /GoTo /D (section.20) >> endobj 156 0 obj (\376\377\000H\000i\000e\000r\000a\000r\000c\000h\000i\000c\000a\000l\000\040\000I\000n\000d\000e\000x) endobj 157 0 obj << /S /GoTo /D (subsection.20.1) >> endobj 160 0 obj (\376\377\000C\000l\000a\000s\000s\000\040\000H\000i\000e\000r\000a\000r\000c\000h\000y) endobj 161 0 obj << /S /GoTo /D (section.21) >> endobj 164 0 obj (\376\377\000C\000l\000a\000s\000s\000\040\000I\000n\000d\000e\000x) endobj 165 0 obj << /S /GoTo /D (subsection.21.1) >> endobj 168 0 obj (\376\377\000C\000l\000a\000s\000s\000\040\000L\000i\000s\000t) endobj 169 0 obj << /S /GoTo /D (section.22) >> endobj 172 0 obj (\376\377\000M\000o\000d\000u\000l\000e\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 173 0 obj << /S /GoTo /D (subsection.22.1) >> endobj 176 0 obj (\376\377\000F\000I\000T\000S\000\040\000E\000x\000c\000e\000p\000t\000i\000o\000n\000s) endobj 177 0 obj << /S /GoTo /D (section.23) >> endobj 180 0 obj (\376\377\000N\000a\000m\000e\000s\000p\000a\000c\000e\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 181 0 obj << /S /GoTo /D (subsection.23.1) >> endobj 184 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000\040\000N\000a\000m\000e\000s\000p\000a\000c\000e\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 185 0 obj << /S /GoTo /D (subsubsection.23.1.1) >> endobj 188 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 189 0 obj << /S /GoTo /D (subsubsection.23.1.2) >> endobj 192 0 obj (\376\377\000E\000n\000u\000m\000e\000r\000a\000t\000i\000o\000n\000\040\000T\000y\000p\000e\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 193 0 obj << /S /GoTo /D (subsubsection.23.1.3) >> endobj 196 0 obj (\376\377\000F\000u\000n\000c\000t\000i\000o\000n\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 197 0 obj << /S /GoTo /D (subsection.23.2) >> endobj 200 0 obj (\376\377\000F\000I\000T\000S\000U\000t\000i\000l\000\040\000N\000a\000m\000e\000s\000p\000a\000c\000e\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 201 0 obj << /S /GoTo /D (subsubsection.23.2.1) >> endobj 204 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 205 0 obj << /S /GoTo /D (section.24) >> endobj 208 0 obj (\376\377\000C\000l\000a\000s\000s\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 209 0 obj << /S /GoTo /D (subsection.24.1) >> endobj 212 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000A\000s\000c\000i\000i\000T\000a\000b\000l\000e\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 213 0 obj << /S /GoTo /D (subsubsection.24.1.1) >> endobj 216 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 217 0 obj << /S /GoTo /D (subsubsection.24.1.2) >> endobj 220 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 221 0 obj << /S /GoTo /D (subsubsection.24.1.3) >> endobj 224 0 obj (\376\377\000M\000e\000m\000b\000e\000r\000\040\000F\000u\000n\000c\000t\000i\000o\000n\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 225 0 obj << /S /GoTo /D (subsection.24.2) >> endobj 228 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000B\000i\000n\000T\000a\000b\000l\000e\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 229 0 obj << /S /GoTo /D (subsubsection.24.2.1) >> endobj 232 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 233 0 obj << /S /GoTo /D (subsubsection.24.2.2) >> endobj 236 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 237 0 obj << /S /GoTo /D (subsubsection.24.2.3) >> endobj 240 0 obj (\376\377\000M\000e\000m\000b\000e\000r\000\040\000F\000u\000n\000c\000t\000i\000o\000n\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 241 0 obj << /S /GoTo /D (subsection.24.3) >> endobj 244 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000C\000o\000l\000u\000m\000n\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 245 0 obj << /S /GoTo /D (subsubsection.24.3.1) >> endobj 248 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 249 0 obj << /S /GoTo /D (subsubsection.24.3.2) >> endobj 252 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 253 0 obj << /S /GoTo /D (subsubsection.24.3.3) >> endobj 256 0 obj (\376\377\000M\000e\000m\000b\000e\000r\000\040\000F\000u\000n\000c\000t\000i\000o\000n\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 257 0 obj << /S /GoTo /D (subsection.24.4) >> endobj 260 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000C\000o\000l\000u\000m\000n\000:\000:\000I\000n\000s\000u\000f\000f\000i\000c\000i\000e\000n\000t\000E\000l\000e\000m\000e\000n\000t\000s\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 261 0 obj << /S /GoTo /D (subsubsection.24.4.1) >> endobj 264 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 265 0 obj << /S /GoTo /D (subsubsection.24.4.2) >> endobj 268 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 269 0 obj << /S /GoTo /D (subsection.24.5) >> endobj 272 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000C\000o\000l\000u\000m\000n\000:\000:\000I\000n\000v\000a\000l\000i\000d\000D\000a\000t\000a\000T\000y\000p\000e\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 273 0 obj << /S /GoTo /D (subsubsection.24.5.1) >> endobj 276 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 277 0 obj << /S /GoTo /D (subsubsection.24.5.2) >> endobj 280 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 281 0 obj << /S /GoTo /D (subsection.24.6) >> endobj 284 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000C\000o\000l\000u\000m\000n\000:\000:\000I\000n\000v\000a\000l\000i\000d\000N\000u\000m\000b\000e\000r\000O\000f\000R\000o\000w\000s\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 285 0 obj << /S /GoTo /D (subsubsection.24.6.1) >> endobj 288 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 289 0 obj << /S /GoTo /D (subsubsection.24.6.2) >> endobj 292 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 293 0 obj << /S /GoTo /D (subsection.24.7) >> endobj 296 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000C\000o\000l\000u\000m\000n\000:\000:\000I\000n\000v\000a\000l\000i\000d\000R\000o\000w\000N\000u\000m\000b\000e\000r\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 297 0 obj << /S /GoTo /D (subsubsection.24.7.1) >> endobj 300 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 301 0 obj << /S /GoTo /D (subsubsection.24.7.2) >> endobj 304 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 305 0 obj << /S /GoTo /D (subsection.24.8) >> endobj 308 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000C\000o\000l\000u\000m\000n\000:\000:\000I\000n\000v\000a\000l\000i\000d\000R\000o\000w\000P\000a\000r\000a\000m\000e\000t\000e\000r\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 309 0 obj << /S /GoTo /D (subsubsection.24.8.1) >> endobj 312 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 313 0 obj << /S /GoTo /D (subsubsection.24.8.2) >> endobj 316 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 317 0 obj << /S /GoTo /D (subsection.24.9) >> endobj 320 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000C\000o\000l\000u\000m\000n\000:\000:\000N\000o\000N\000u\000l\000l\000V\000a\000l\000u\000e\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 321 0 obj << /S /GoTo /D (subsubsection.24.9.1) >> endobj 324 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 325 0 obj << /S /GoTo /D (subsubsection.24.9.2) >> endobj 328 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 329 0 obj << /S /GoTo /D (subsection.24.10) >> endobj 332 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000C\000o\000l\000u\000m\000n\000:\000:\000R\000a\000n\000g\000e\000E\000r\000r\000o\000r\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 333 0 obj << /S /GoTo /D (subsubsection.24.10.1) >> endobj 336 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 337 0 obj << /S /GoTo /D (subsubsection.24.10.2) >> endobj 340 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 341 0 obj << /S /GoTo /D (subsection.24.11) >> endobj 344 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000C\000o\000l\000u\000m\000n\000:\000:\000W\000r\000o\000n\000g\000C\000o\000l\000u\000m\000n\000T\000y\000p\000e\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 345 0 obj << /S /GoTo /D (subsubsection.24.11.1) >> endobj 348 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 349 0 obj << /S /GoTo /D (subsubsection.24.11.2) >> endobj 352 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 353 0 obj << /S /GoTo /D (subsection.24.12) >> endobj 356 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000E\000x\000t\000H\000D\000U\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 357 0 obj << /S /GoTo /D (subsubsection.24.12.1) >> endobj 360 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 361 0 obj << /S /GoTo /D (subsubsection.24.12.2) >> endobj 364 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 365 0 obj << /S /GoTo /D (subsubsection.24.12.3) >> endobj 368 0 obj (\376\377\000M\000e\000m\000b\000e\000r\000\040\000F\000u\000n\000c\000t\000i\000o\000n\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 369 0 obj << /S /GoTo /D (subsection.24.13) >> endobj 372 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000E\000x\000t\000H\000D\000U\000:\000:\000W\000r\000o\000n\000g\000E\000x\000t\000e\000n\000s\000i\000o\000n\000T\000y\000p\000e\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 373 0 obj << /S /GoTo /D (subsubsection.24.13.1) >> endobj 376 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 377 0 obj << /S /GoTo /D (subsubsection.24.13.2) >> endobj 380 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 381 0 obj << /S /GoTo /D (subsection.24.14) >> endobj 384 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000F\000I\000T\000S\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 385 0 obj << /S /GoTo /D (subsubsection.24.14.1) >> endobj 388 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 389 0 obj << /S /GoTo /D (subsubsection.24.14.2) >> endobj 392 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 393 0 obj << /S /GoTo /D (subsubsection.24.14.3) >> endobj 396 0 obj (\376\377\000M\000e\000m\000b\000e\000r\000\040\000F\000u\000n\000c\000t\000i\000o\000n\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 397 0 obj << /S /GoTo /D (subsection.24.15) >> endobj 400 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000F\000I\000T\000S\000:\000:\000C\000a\000n\000t\000C\000r\000e\000a\000t\000e\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 401 0 obj << /S /GoTo /D (subsubsection.24.15.1) >> endobj 404 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 405 0 obj << /S /GoTo /D (subsubsection.24.15.2) >> endobj 408 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 409 0 obj << /S /GoTo /D (subsection.24.16) >> endobj 412 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000F\000I\000T\000S\000:\000:\000C\000a\000n\000t\000O\000p\000e\000n\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 413 0 obj << /S /GoTo /D (subsubsection.24.16.1) >> endobj 416 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 417 0 obj << /S /GoTo /D (subsubsection.24.16.2) >> endobj 420 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 421 0 obj << /S /GoTo /D (subsection.24.17) >> endobj 424 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000F\000I\000T\000S\000:\000:\000N\000o\000S\000u\000c\000h\000H\000D\000U\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 425 0 obj << /S /GoTo /D (subsubsection.24.17.1) >> endobj 428 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 429 0 obj << /S /GoTo /D (subsubsection.24.17.2) >> endobj 432 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 433 0 obj << /S /GoTo /D (subsection.24.18) >> endobj 436 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000F\000I\000T\000S\000:\000:\000O\000p\000e\000r\000a\000t\000i\000o\000n\000N\000o\000t\000S\000u\000p\000p\000o\000r\000t\000e\000d\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 437 0 obj << /S /GoTo /D (subsubsection.24.18.1) >> endobj 440 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 441 0 obj << /S /GoTo /D (subsubsection.24.18.2) >> endobj 444 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 445 0 obj << /S /GoTo /D (subsection.24.19) >> endobj 448 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000F\000i\000t\000s\000E\000r\000r\000o\000r\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 449 0 obj << /S /GoTo /D (subsubsection.24.19.1) >> endobj 452 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 453 0 obj << /S /GoTo /D (subsubsection.24.19.2) >> endobj 456 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 457 0 obj << /S /GoTo /D (subsection.24.20) >> endobj 460 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000F\000i\000t\000s\000E\000x\000c\000e\000p\000t\000i\000o\000n\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 461 0 obj << /S /GoTo /D (subsubsection.24.20.1) >> endobj 464 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 465 0 obj << /S /GoTo /D (subsubsection.24.20.2) >> endobj 468 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 469 0 obj << /S /GoTo /D (subsubsection.24.20.3) >> endobj 472 0 obj (\376\377\000M\000e\000m\000b\000e\000r\000\040\000F\000u\000n\000c\000t\000i\000o\000n\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 473 0 obj << /S /GoTo /D (subsection.24.21) >> endobj 476 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000F\000i\000t\000s\000F\000a\000t\000a\000l\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 477 0 obj << /S /GoTo /D (subsubsection.24.21.1) >> endobj 480 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 481 0 obj << /S /GoTo /D (subsubsection.24.21.2) >> endobj 484 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 485 0 obj << /S /GoTo /D (subsection.24.22) >> endobj 488 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000F\000I\000T\000S\000U\000t\000i\000l\000:\000:\000a\000u\000t\000o\000\137\000a\000r\000r\000a\000y\000\137\000p\000t\000r\000<\000\040\000X\000\040\000>\000\040\000C\000l\000a\000s\000s\000\040\000T\000e\000m\000p\000l\000a\000t\000e\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 489 0 obj << /S /GoTo /D (subsubsection.24.22.1) >> endobj 492 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 493 0 obj << /S /GoTo /D (subsection.24.23) >> endobj 496 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000F\000I\000T\000S\000U\000t\000i\000l\000:\000:\000C\000A\000a\000r\000r\000a\000y\000<\000\040\000T\000\040\000>\000\040\000C\000l\000a\000s\000s\000\040\000T\000e\000m\000p\000l\000a\000t\000e\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 497 0 obj << /S /GoTo /D (subsubsection.24.23.1) >> endobj 500 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 501 0 obj << /S /GoTo /D (subsection.24.24) >> endobj 504 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000F\000I\000T\000S\000U\000t\000i\000l\000:\000:\000C\000V\000A\000a\000r\000r\000a\000y\000<\000\040\000T\000\040\000>\000\040\000C\000l\000a\000s\000s\000\040\000T\000e\000m\000p\000l\000a\000t\000e\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 505 0 obj << /S /GoTo /D (subsubsection.24.24.1) >> endobj 508 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 509 0 obj << /S /GoTo /D (subsection.24.25) >> endobj 512 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000F\000I\000T\000S\000U\000t\000i\000l\000:\000:\000C\000V\000a\000r\000r\000a\000y\000<\000\040\000T\000\040\000>\000\040\000C\000l\000a\000s\000s\000\040\000T\000e\000m\000p\000l\000a\000t\000e\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 513 0 obj << /S /GoTo /D (subsubsection.24.25.1) >> endobj 516 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 517 0 obj << /S /GoTo /D (subsection.24.26) >> endobj 520 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000F\000I\000T\000S\000U\000t\000i\000l\000:\000:\000M\000a\000t\000c\000h\000N\000a\000m\000e\000<\000\040\000T\000\040\000>\000\040\000C\000l\000a\000s\000s\000\040\000T\000e\000m\000p\000l\000a\000t\000e\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 521 0 obj << /S /GoTo /D (subsubsection.24.26.1) >> endobj 524 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 525 0 obj << /S /GoTo /D (subsection.24.27) >> endobj 528 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000F\000I\000T\000S\000U\000t\000i\000l\000:\000:\000M\000a\000t\000c\000h\000N\000u\000m\000<\000\040\000T\000\040\000>\000\040\000C\000l\000a\000s\000s\000\040\000T\000e\000m\000p\000l\000a\000t\000e\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 529 0 obj << /S /GoTo /D (subsubsection.24.27.1) >> endobj 532 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 533 0 obj << /S /GoTo /D (subsection.24.28) >> endobj 536 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000F\000I\000T\000S\000U\000t\000i\000l\000:\000:\000M\000a\000t\000c\000h\000P\000t\000r\000N\000a\000m\000e\000<\000\040\000T\000\040\000>\000\040\000C\000l\000a\000s\000s\000\040\000T\000e\000m\000p\000l\000a\000t\000e\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 537 0 obj << /S /GoTo /D (subsubsection.24.28.1) >> endobj 540 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 541 0 obj << /S /GoTo /D (subsection.24.29) >> endobj 544 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000F\000I\000T\000S\000U\000t\000i\000l\000:\000:\000M\000a\000t\000c\000h\000P\000t\000r\000N\000u\000m\000<\000\040\000T\000\040\000>\000\040\000C\000l\000a\000s\000s\000\040\000T\000e\000m\000p\000l\000a\000t\000e\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 545 0 obj << /S /GoTo /D (subsubsection.24.29.1) >> endobj 548 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 549 0 obj << /S /GoTo /D (subsection.24.30) >> endobj 552 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000F\000I\000T\000S\000U\000t\000i\000l\000:\000:\000M\000a\000t\000c\000h\000T\000y\000p\000e\000<\000\040\000T\000\040\000>\000\040\000C\000l\000a\000s\000s\000\040\000T\000e\000m\000p\000l\000a\000t\000e\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 553 0 obj << /S /GoTo /D (subsubsection.24.30.1) >> endobj 556 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 557 0 obj << /S /GoTo /D (subsection.24.31) >> endobj 560 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000F\000I\000T\000S\000U\000t\000i\000l\000:\000:\000U\000n\000r\000e\000c\000o\000g\000n\000i\000z\000e\000d\000T\000y\000p\000e\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 561 0 obj << /S /GoTo /D (subsubsection.24.31.1) >> endobj 564 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 565 0 obj << /S /GoTo /D (subsection.24.32) >> endobj 568 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000H\000D\000U\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 569 0 obj << /S /GoTo /D (subsubsection.24.32.1) >> endobj 572 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 573 0 obj << /S /GoTo /D (subsubsection.24.32.2) >> endobj 576 0 obj (\376\377\000M\000e\000m\000b\000e\000r\000\040\000F\000u\000n\000c\000t\000i\000o\000n\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 577 0 obj << /S /GoTo /D (subsection.24.33) >> endobj 580 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000H\000D\000U\000:\000:\000I\000n\000v\000a\000l\000i\000d\000E\000x\000t\000e\000n\000s\000i\000o\000n\000T\000y\000p\000e\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 581 0 obj << /S /GoTo /D (subsubsection.24.33.1) >> endobj 584 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 585 0 obj << /S /GoTo /D (subsubsection.24.33.2) >> endobj 588 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 589 0 obj << /S /GoTo /D (subsection.24.34) >> endobj 592 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000H\000D\000U\000:\000:\000I\000n\000v\000a\000l\000i\000d\000I\000m\000a\000g\000e\000D\000a\000t\000a\000T\000y\000p\000e\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 593 0 obj << /S /GoTo /D (subsubsection.24.34.1) >> endobj 596 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 597 0 obj << /S /GoTo /D (subsubsection.24.34.2) >> endobj 600 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 601 0 obj << /S /GoTo /D (subsection.24.35) >> endobj 604 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000H\000D\000U\000:\000:\000N\000o\000N\000u\000l\000l\000V\000a\000l\000u\000e\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 605 0 obj << /S /GoTo /D (subsubsection.24.35.1) >> endobj 608 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 609 0 obj << /S /GoTo /D (subsubsection.24.35.2) >> endobj 612 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 613 0 obj << /S /GoTo /D (subsection.24.36) >> endobj 616 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000H\000D\000U\000:\000:\000N\000o\000S\000u\000c\000h\000K\000e\000y\000w\000o\000r\000d\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 617 0 obj << /S /GoTo /D (subsubsection.24.36.1) >> endobj 620 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 621 0 obj << /S /GoTo /D (subsubsection.24.36.2) >> endobj 624 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 625 0 obj << /S /GoTo /D (subsection.24.37) >> endobj 628 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000I\000m\000a\000g\000e\000E\000x\000t\000<\000\040\000T\000\040\000>\000\040\000C\000l\000a\000s\000s\000\040\000T\000e\000m\000p\000l\000a\000t\000e\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 629 0 obj << /S /GoTo /D (subsubsection.24.37.1) >> endobj 632 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 633 0 obj << /S /GoTo /D (subsubsection.24.37.2) >> endobj 636 0 obj (\376\377\000M\000e\000m\000b\000e\000r\000\040\000F\000u\000n\000c\000t\000i\000o\000n\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 637 0 obj << /S /GoTo /D (subsection.24.38) >> endobj 640 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000K\000e\000y\000w\000o\000r\000d\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 641 0 obj << /S /GoTo /D (subsubsection.24.38.1) >> endobj 644 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 645 0 obj << /S /GoTo /D (subsubsection.24.38.2) >> endobj 648 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 649 0 obj << /S /GoTo /D (subsubsection.24.38.3) >> endobj 652 0 obj (\376\377\000M\000e\000m\000b\000e\000r\000\040\000F\000u\000n\000c\000t\000i\000o\000n\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 653 0 obj << /S /GoTo /D (subsection.24.39) >> endobj 656 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000P\000H\000D\000U\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 657 0 obj << /S /GoTo /D (subsubsection.24.39.1) >> endobj 660 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 661 0 obj << /S /GoTo /D (subsubsection.24.39.2) >> endobj 664 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 665 0 obj << /S /GoTo /D (subsubsection.24.39.3) >> endobj 668 0 obj (\376\377\000M\000e\000m\000b\000e\000r\000\040\000F\000u\000n\000c\000t\000i\000o\000n\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 669 0 obj << /S /GoTo /D (subsection.24.40) >> endobj 672 0 obj (\376\377\000C\000C\000f\000i\000t\000s\000:\000:\000T\000a\000b\000l\000e\000\040\000C\000l\000a\000s\000s\000\040\000R\000e\000f\000e\000r\000e\000n\000c\000e) endobj 673 0 obj << /S /GoTo /D (subsubsection.24.40.1) >> endobj 676 0 obj (\376\377\000D\000e\000t\000a\000i\000l\000e\000d\000\040\000D\000e\000s\000c\000r\000i\000p\000t\000i\000o\000n) endobj 677 0 obj << /S /GoTo /D (subsubsection.24.40.2) >> endobj 680 0 obj (\376\377\000C\000o\000n\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000\046\000\040\000D\000e\000s\000t\000r\000u\000c\000t\000o\000r\000\040\000D\000o\000c\000u\000m\000e\000n\000t\000a\000t\000i\000o\000n) endobj 681 0 obj << /S /GoTo /D (subsubsection.24.40.3) >> endobj 684 0 obj 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3512 a 0 TeXcolorgray 48 w Fx(.)41 b(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)124 b(98)p 0 0 1 TeXcolorrgb 639 3611 a SDict begin H.S end 639 3611 a Fx(24.16)r (CC\002ts::FITS::CantOpen)21 b(Class)h(Reference)2202 3611 y SDict begin 12 H.L end 2202 3611 a 2202 3611 a SDict begin [ /Subtype /Link /Dest (subsection.24.16) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 2202 3611 a 0 TeXcolorgray 77 w Fx(.)41 b(.)g(.)h(.)f(.)g(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.) 124 b(99)p 0 0 1 TeXcolorrgb 830 3711 a SDict begin H.S end 830 3711 a Fx(24.16.1)14 b(Detailed)20 b(Description)1787 3711 y SDict begin 12 H.L end 1787 3711 a 1787 3711 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.16.1) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 1787 3711 a 0 TeXcolorgray 56 w Fx(.)41 b(.)h(.)f(.)g(.)g(.)h(.) f(.)g(.)g(.)h(.)f(.)g(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(100)p 0 0 1 TeXcolorrgb 830 3811 a SDict begin H.S end 830 3811 a Fx(24.16.2)14 b(Constructor)19 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TeXcolorgray 56 w Fx(.)41 b(.)h(.)f(.)g(.)g(.)h(.) f(.)g(.)g(.)h(.)f(.)g(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(101)p 0 0 1 TeXcolorrgb 830 4110 a SDict begin H.S end 830 4110 a Fx(24.17.2)14 b(Constructor)19 b(&)h(Destructor)f(Documentation)2480 4110 y SDict begin 12 H.L end 2480 4110 a 2480 4110 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.17.2) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 2480 4110 a 0 TeXcolorgray 48 w Fx(.)41 b(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(101)p 0 0 1 TeXcolorrgb 639 4209 a SDict begin H.S end 639 4209 a Fx(24.18)r (CC\002ts::FITS::OperationNotSupported)17 b(Class)22 b(Reference)2663 4209 y SDict begin 12 H.L end 2663 4209 a 2663 4209 a SDict begin [ /Subtype /Link /Dest (subsection.24.18) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 2663 4209 a 0 TeXcolorgray 52 w Fx(.)41 b(.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(101)p 0 0 1 TeXcolorrgb 830 4309 a SDict begin H.S end 830 4309 a Fx(24.18.1)14 b(Detailed)20 b(Description)1787 4309 y SDict begin 12 H.L end 1787 4309 a 1787 4309 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.18.1) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 1787 4309 a 0 TeXcolorgray 56 w Fx(.)41 b(.)h(.)f(.)g(.)g(.)h(.) f(.)g(.)g(.)h(.)f(.)g(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(102)p 0 0 1 TeXcolorrgb 830 4408 a SDict begin H.S end 830 4408 a Fx(24.18.2)14 b(Constructor)19 b(&)h(Destructor)f(Documentation)2480 4408 y SDict begin 12 H.L end 2480 4408 a 2480 4408 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.18.2) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 2480 4408 a 0 TeXcolorgray 48 w Fx(.)41 b(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(102)p 0 0 1 TeXcolorrgb 639 4508 a SDict begin H.S end 639 4508 a Fx(24.19)r (CC\002ts::FitsError)21 b(Class)h(Reference)1948 4508 y SDict begin 12 H.L end 1948 4508 a 1948 4508 a SDict begin [ /Subtype /Link /Dest (subsection.24.19) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B 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623 y SDict begin 12 H.L end 1937 623 a 1937 623 a SDict begin [ /Subtype /Link /Dest (subsection.24.21) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 1937 623 a 0 TeXcolorgray 31 w Fx(.)41 b(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.) f(.)g(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(105)p 0 0 1 TeXcolorrgb 830 722 a SDict begin H.S end 830 722 a Fx(24.21.1)14 b(Detailed)20 b(Description)1787 722 y SDict begin 12 H.L end 1787 722 a 1787 722 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.21.1) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 1787 722 a 0 TeXcolorgray 56 w Fx(.)41 b(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)f (.)g(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(106)p 0 0 1 TeXcolorrgb 830 822 a SDict begin H.S end 830 822 a Fx(24.21.2)14 b(Constructor)19 b(&)h(Destructor)f(Documentation)2480 822 y SDict begin 12 H.L end 2480 822 a 2480 822 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.21.2) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark 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Fx(24.23)r(CC\002ts::FITSUtil::CAarray)p Fu(<)21 b Fx(T)f Fu(>)h Fx(Class)g(T)-6 b(emplate)20 b(Reference)2830 1121 y SDict begin 12 H.L end 2830 1121 a 2830 1121 a SDict begin [ /Subtype /Link /Dest (subsection.24.23) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 2830 1121 a 0 TeXcolorgray 72 w Fx(.)41 b(.)g(.)g(.)h(.)82 b(108)p 0 0 1 TeXcolorrgb 830 1220 a SDict begin H.S end 830 1220 a Fx(24.23.1)14 b(Detailed)20 b(Description)1787 1220 y SDict begin 12 H.L end 1787 1220 a 1787 1220 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.23.1) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 1787 1220 a 0 TeXcolorgray 56 w Fx(.)41 b(.)h(.)f(.)g(.)g(.)h(.) f(.)g(.)g(.)h(.)f(.)g(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(108)p 0 0 1 TeXcolorrgb 639 1320 a SDict begin H.S end 639 1320 a Fx(24.24)r (CC\002ts::FITSUtil::CVAarray)p Fu(<)21 b Fx(T)f Fu(>)g Fx(Class)i(T)-6 b(emplate)20 b(Reference)2890 1320 y SDict begin 12 H.L end 2890 1320 a 2890 1320 a SDict begin [ /Subtype /Link /Dest (subsection.24.24) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 2890 1320 a 0 TeXcolorgray 74 w Fx(.)41 b(.)g(.)h(.)82 b(108)p 0 0 1 TeXcolorrgb 830 1420 a SDict begin H.S end 830 1420 a Fx(24.24.1)14 b(Detailed)20 b(Description)1787 1420 y SDict begin 12 H.L end 1787 1420 a 1787 1420 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.24.1) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 1787 1420 a 0 TeXcolorgray 56 w Fx(.)41 b(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)h(.)f(.)g (.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(108)p 0 0 1 TeXcolorrgb 639 1519 a SDict begin H.S end 639 1519 a Fx(24.25)r(CC\002ts::FITSUtil::CV)-9 b(array)p Fu(<)21 b Fx(T)f Fu(>)g Fx(Class)i(T)-6 b(emplate)20 b(Reference)2821 1519 y SDict begin 12 H.L end 2821 1519 a 2821 1519 a SDict begin [ /Subtype /Link /Dest (subsection.24.25) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 2821 1519 a 0 TeXcolorgray 81 w Fx(.)41 b(.)g(.)g(.)h(.)82 b(109)p 0 0 1 TeXcolorrgb 830 1619 a SDict begin H.S end 830 1619 a Fx(24.25.1)14 b(Detailed)20 b(Description)1787 1619 y SDict begin 12 H.L end 1787 1619 a 1787 1619 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.25.1) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 1787 1619 a 0 TeXcolorgray 56 w Fx(.)41 b(.)h(.)f(.)g(.)g(.)h(.) f(.)g(.)g(.)h(.)f(.)g(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(109)p 0 0 1 TeXcolorrgb 639 1719 a SDict begin H.S end 639 1719 a Fx(24.26)r (CC\002ts::FITSUtil::MatchName)p Fu(<)20 b Fx(T)h Fu(>)f Fx(Class)i(T)-6 b(emplate)19 b(Reference)2954 1719 y SDict begin 12 H.L end 2954 1719 a 2954 1719 a SDict begin [ /Subtype /Link /Dest (subsection.24.26) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 2954 1719 a 0 TeXcolorgray 72 w Fx(.)41 b(.)h(.)82 b(109)p 0 0 1 TeXcolorrgb 830 1818 a SDict begin H.S end 830 1818 a Fx(24.26.1)14 b(Detailed)20 b(Description)1787 1818 y SDict begin 12 H.L end 1787 1818 a 1787 1818 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.26.1) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 1787 1818 a 0 TeXcolorgray 56 w Fx(.)41 b(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)h(.)f(.)g (.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(109)p 0 0 1 TeXcolorrgb 639 1918 a SDict begin H.S end 639 1918 a Fx(24.27)r(CC\002ts::FITSUtil::MatchNum)p Fu(<)20 b Fx(T)h Fu(>)f Fx(Class)i(T)-6 b(emplate)19 b(Reference)2922 1918 y SDict begin 12 H.L end 2922 1918 a 2922 1918 a SDict begin [ /Subtype /Link /Dest (subsection.24.27) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 2922 1918 a 0 TeXcolorgray 42 w Fx(.)41 b(.)g(.)h(.)82 b(110)p 0 0 1 TeXcolorrgb 830 2017 a SDict begin H.S end 830 2017 a Fx(24.27.1)14 b(Detailed)20 b(Description)1787 2017 y SDict begin 12 H.L end 1787 2017 a 1787 2017 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.27.1) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 1787 2017 a 0 TeXcolorgray 56 w Fx(.)41 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Fx(24.29)r(CC\002ts::FITSUtil::MatchPtrNum)p Fu(<)20 b Fx(T)g Fu(>)h Fx(Class)g(T)-6 b(emplate)20 b(Reference)3019 2316 y SDict begin 12 H.L end 3019 2316 a 3019 2316 a SDict begin [ /Subtype /Link /Dest (subsection.24.29) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 3019 2316 a 0 TeXcolorgray 69 w Fx(.)42 b(.)82 b(111)p 0 0 1 TeXcolorrgb 830 2416 a SDict begin H.S end 830 2416 a Fx(24.29.1)14 b(Detailed)20 b(Description)1787 2416 y SDict begin 12 H.L end 1787 2416 a 1787 2416 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.29.1) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 1787 2416 a 0 TeXcolorgray 56 w Fx(.)41 b(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.) h(.)f(.)g(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(111)p 0 0 1 TeXcolorrgb 639 2516 a SDict begin H.S end 639 2516 a Fx(24.30)r (CC\002ts::FITSUtil::MatchT)-7 b(ype)p Fu(<)20 b Fx(T)h Fu(>)f Fx(Class)h(T)-6 b(emplate)20 b(Reference)2920 2516 y SDict begin 12 H.L end 2920 2516 a 2920 2516 a SDict 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TeXcolorrgb 830 2814 a SDict begin H.S end 830 2814 a Fx(24.31.1)14 b(Detailed)20 b(Description)1787 2814 y SDict begin 12 H.L end 1787 2814 a 1787 2814 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.31.1) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 1787 2814 a 0 TeXcolorgray 56 w Fx(.)41 b(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)h(.)f(.)g (.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(112)p 0 0 1 TeXcolorrgb 639 2914 a SDict begin H.S end 639 2914 a Fx(24.32)r(CC\002ts::HDU)22 b(Class)g(Reference) 1828 2914 y SDict begin 12 H.L end 1828 2914 a 1828 2914 a SDict begin [ /Subtype /Link /Dest (subsection.24.32) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 1828 2914 a 0 TeXcolorgray 77 w Fx(.)42 b(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)h(.)f(.)g(.)g (.)h(.)f(.)g(.)g(.)h(.)82 b(112)p 0 0 1 TeXcolorrgb 830 3014 a SDict begin H.S end 830 3014 a Fx(24.32.1)14 b(Detailed)20 b(Description)1787 3014 y SDict begin 12 H.L end 1787 3014 a 1787 3014 a SDict begin 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Fx(.)41 b(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(121)p 0 0 1 TeXcolorrgb 830 3313 a SDict begin H.S end 830 3313 a Fx(24.33.1)14 b(Detailed)20 b(Description)1787 3313 y SDict begin 12 H.L end 1787 3313 a 1787 3313 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.33.1) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 1787 3313 a 0 TeXcolorgray 56 w Fx(.)41 b(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)h(.)f(.)g (.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(122)p 0 0 1 TeXcolorrgb 830 3412 a SDict begin H.S end 830 3412 a Fx(24.33.2)14 b(Constructor)19 b(&)h(Destructor)f(Documentation)2480 3412 y SDict begin 12 H.L end 2480 3412 a 2480 3412 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.33.2) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 2480 3412 a 0 TeXcolorgray 48 w Fx(.)41 b(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(122)p 0 0 1 TeXcolorrgb 639 3512 a SDict begin H.S end 639 3512 a Fx(24.34)r(CC\002ts::HDU::In)m(v)n (alidImageDataT)-7 b(ype)17 b(Class)22 b(Reference)2632 3512 y SDict begin 12 H.L end 2632 3512 a 2632 3512 a SDict begin [ /Subtype /Link /Dest (subsection.24.34) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 2632 3512 a 0 TeXcolorgray 21 w Fx(.)41 b(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(122)p 0 0 1 TeXcolorrgb 830 3611 a SDict begin H.S end 830 3611 a Fx(24.34.1)14 b(Detailed)20 b(Description)1787 3611 y SDict begin 12 H.L end 1787 3611 a 1787 3611 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.34.1) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 1787 3611 a 0 TeXcolorgray 56 w Fx(.)41 b(.)h(.)f(.)g(.)g(.)h(.) f(.)g(.)g(.)h(.)f(.)g(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(123)p 0 0 1 TeXcolorrgb 830 3711 a SDict begin H.S end 830 3711 a Fx(24.34.2)14 b(Constructor)19 b(&)h(Destructor)f(Documentation)2480 3711 y SDict begin 12 H.L end 2480 3711 a 2480 3711 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.34.2) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 2480 3711 a 0 TeXcolorgray 48 w Fx(.)41 b(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(123)p 0 0 1 TeXcolorrgb 639 3811 a SDict begin H.S end 639 3811 a Fx(24.35)r (CC\002ts::HDU::NoNullV)-9 b(alue)21 b(Class)g(Reference)2312 3811 y SDict begin 12 H.L end 2312 3811 a 2312 3811 a SDict begin [ /Subtype /Link /Dest (subsection.24.35) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 2312 3811 a 0 TeXcolorgray 29 w Fx(.)41 b(.)h(.)f(.)g(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(123)p 0 0 1 TeXcolorrgb 830 3910 a SDict begin H.S end 830 3910 a Fx(24.35.1)14 b(Detailed)20 b(Description)1787 3910 y SDict begin 12 H.L end 1787 3910 a 1787 3910 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.35.1) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 1787 3910 a 0 TeXcolorgray 56 w Fx(.)41 b(.)h(.)f(.)g(.)g(.)h(.) f(.)g(.)g(.)h(.)f(.)g(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(124)p 0 0 1 TeXcolorrgb 830 4010 a SDict begin H.S end 830 4010 a Fx(24.35.2)14 b(Constructor)19 b(&)h(Destructor)f(Documentation)2480 4010 y SDict begin 12 H.L end 2480 4010 a 2480 4010 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.35.2) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 2480 4010 a 0 TeXcolorgray 48 w Fx(.)41 b(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(124)p 0 0 1 TeXcolorrgb 639 4110 a SDict begin H.S end 639 4110 a Fx(24.36)r (CC\002ts::HDU::NoSuchK)n(e)o(yw)o(ord)19 b(Class)i(Reference)2446 4110 y SDict begin 12 H.L end 2446 4110 a 2446 4110 a SDict begin [ /Subtype /Link /Dest (subsection.24.36) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 2446 4110 a 0 TeXcolorgray 20 w Fx(.)41 b(.)g(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(125)p 0 0 1 TeXcolorrgb 830 4209 a SDict begin H.S end 830 4209 a Fx(24.36.1)14 b(Detailed)20 b(Description)1787 4209 y SDict begin 12 H.L end 1787 4209 a 1787 4209 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.36.1) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 1787 4209 a 0 TeXcolorgray 56 w Fx(.)41 b(.)h(.)f(.)g(.)g(.)h(.) f(.)g(.)g(.)h(.)f(.)g(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(125)p 0 0 1 TeXcolorrgb 830 4309 a SDict begin H.S end 830 4309 a Fx(24.36.2)14 b(Constructor)19 b(&)h(Destructor)f(Documentation)2480 4309 y SDict begin 12 H.L end 2480 4309 a 2480 4309 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.36.2) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 2480 4309 a 0 TeXcolorgray 48 w Fx(.)41 b(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(125)p 0 0 1 TeXcolorrgb 639 4408 a SDict begin H.S end 639 4408 a Fx(24.37)r (CC\002ts::ImageExt)p Fu(<)20 b Fx(T)g Fu(>)g Fx(Class)i(T)-6 b(emplate)20 b(Reference)2521 4408 y SDict begin 12 H.L end 2521 4408 a 2521 4408 a SDict begin [ /Subtype /Link /Dest (subsection.24.37) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 2521 4408 a 0 TeXcolorgray 69 w Fx(.)42 b(.)f(.)g(.)g(.)h(.)f(.) g(.)g(.)h(.)82 b(126)p 0 0 1 TeXcolorrgb 830 4508 a SDict begin H.S end 830 4508 a Fx(24.37.1)14 b(Detailed)20 b(Description)1787 4508 y SDict begin 12 H.L end 1787 4508 a 1787 4508 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.37.1) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 1787 4508 a 0 TeXcolorgray 56 w Fx(.)41 b(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)g(.)h(.)f(.)g(.)h(.)f(.)g (.)g(.)h(.)f(.)g(.)g(.)h(.)82 b(126)p 0 0 1 TeXcolorrgb 830 4608 a SDict begin H.S end 830 4608 a Fx(24.37.2)14 b(Member)19 b(Function)g (Documentation)2229 4608 y SDict begin 12 H.L end 2229 4608 a 2229 4608 a SDict begin [ /Subtype /Link /Dest (subsubsection.24.37.2) cvn /H /I /Border [0 0 0] /Color [1 0 0] H.B /ANN pdfmark end 2229 4608 a 0 TeXcolorgray 50 w Fx(.)41 b(.)g(.)h(.)f(.)g(.)h(.)f(.)g(.)g(.) h(.)f(.)g(.)g(.)h(.)82 b(127)p 0 0 1 TeXcolorrgb 639 4707 a SDict begin H.S end 639 4707 a Fx(24.38)r(CC\002ts::K)n(e)o(yw)o(ord)20 b(Class)i(Reference)1953 4707 y SDict begin 12 H.L end 1953 4707 a 1953 4707 a SDict begin [ /Subtype /Link /Dest (subsection.24.38) cvn /H 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pdfmark end 515 4154 a 0 TeXcolorgray 652 4286 a Fx(\225)p 0 TeXcolorgray 41 w(class)p 0 0 1 TeXcolorrgb 904 4287 a SDict begin H.S end 904 4287 a 0 0 1 TeXcolorrgb -1 x Fx(Insuf)n(\002cientElements)p 0 0 1 TeXcolorrgb 1590 4229 a SDict begin H.R end 1590 4229 a 1590 4286 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Column_1_1InsufficientElements) cvn H.B /ANN pdfmark end 1590 4286 a 0 TeXcolorgray 0 TeXcolorgray 0 TeXcolorgray 840 4410 a Fl(Exception)g(thr)m(own)f(if) f(the)h(data)h(supplied)g(for)e(a)i(write)e(oper)o(ation)i(is)e(less)h (than)h(declar)m(ed.)p 0 TeXcolorgray 652 4518 a Fx(\225)p 0 TeXcolorgray 41 w(class)p 0 0 1 TeXcolorrgb 904 4536 a SDict begin H.S end 904 4536 a 0 0 1 TeXcolorrgb -18 x Fx(In)m(v)n(alidDataT)-7 b(ype)p 0 0 1 TeXcolorrgb 1455 4462 a SDict begin H.R end 1455 4462 a 1455 4518 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Column_1_1InvalidDataType) cvn H.B /ANN 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4983 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Column_1_1InvalidRowNumber) cvn H.B /ANN pdfmark end 1561 4983 a 0 TeXcolorgray 0 TeXcolorgray 515 5156 2865 4 v 515 5255 a Fw(Generated)g(on)g(T)-5 b(ue)14 b(Dec)g(6)g(2011)h (16:12:51)h(f)o(or)e(CC\002ts)h(by)g(Doxygen)p 0 TeXcolorgray eop end %%Page: 51 56 TeXDict begin 51 55 bop 0 TeXcolorgray 0 0 a SDict begin /product where{pop product(Distiller)search{pop pop pop version(.)search{exch pop exch pop(3011)eq{gsave newpath 0 0 moveto closepath clip/Courier findfont 10 scalefont setfont 72 72 moveto(.)show grestore}if}{pop}ifelse}{pop}ifelse}if end 0 0 a 0 TeXcolorgray 0 TeXcolorgray 515 232 a SDict begin H.S end 515 232 a 0 TeXcolorgray 0 TeXcolorgray 515 232 a SDict begin H.R end 515 232 a 515 232 a SDict begin [ /View [/XYZ H.V] /Dest (page.51) cvn H.B /DEST pdfmark end 515 232 a 0 TeXcolorgray -29 x Fy(24.3)81 b(CC\002ts::Column)20 b(Class)h(Refer)o(ence)1400 b(51)p 515 236 2865 4 v 0 TeXcolorgray 0 TeXcolorgray 0 TeXcolorgray 840 523 a Fl(Exception)20 b(thr)m(own)f(on)g(attempting)h(to)e(r)m(ead)i(a)f(r)m (ow)g(number)h(be)n(yond)g(the)f(end)h(of)f(a)g(table)o(.)p 0 TeXcolorgray 652 631 a Fx(\225)p 0 TeXcolorgray 41 w(class)p 0 0 1 TeXcolorrgb 904 632 a SDict begin H.S end 904 632 a 0 0 1 TeXcolorrgb -1 x Fx(In)m(v)n(alidRo)n(wP)o(arameter)p 0 0 1 TeXcolorrgb 1624 575 a SDict begin H.R end 1624 575 a 1624 631 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Column_1_1InvalidRowParameter) cvn H.B /ANN pdfmark end 1624 631 a 0 TeXcolorgray 0 TeXcolorgray 0 TeXcolorgray 840 756 a Fl(Exception)h(thr)m(own)f(on)g(incorr)m(ect)h(r)m(ow)f(writing)f (r)m(equest.)p 0 TeXcolorgray 652 863 a Fx(\225)p 0 TeXcolorgray 41 w(class)p 0 0 1 TeXcolorrgb 904 864 a SDict begin H.S end 904 864 a 0 0 1 TeXcolorrgb -1 x Fx(NoNullV)-9 b(alue)p 0 0 1 TeXcolorrgb 1343 807 a SDict begin H.R end 1343 807 a 1343 863 a SDict begin [ /Color [1 0 0] /H /I 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[0 0 0] /Subtype /Link /Dest (classCCfits_1_1Column_a01cd84a7155888aadc568231f908bd5e) cvn H.B /ANN pdfmark end 990 2001 a 0 TeXcolorgray 21 w Fx(\(const)p 0 0 1 TeXcolorrgb 1234 2002 a SDict begin H.S end 1234 2002 a 0 0 1 TeXcolorrgb -1 x Fx(Column)p 0 0 1 TeXcolorrgb 1502 1945 a SDict begin H.R end 1502 1945 a 1502 2001 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Column) cvn H.B /ANN pdfmark end 1502 2001 a 0 TeXcolorgray 21 w Fx(&right\))p 0 TeXcolorgray 0 TeXcolorgray 840 2126 a Fl(copy)i(constructor)-8 b(,)20 b(used)f(in)g(copying)h(Columns)g(to)f(standar)m(d)h(libr)o(ary)f (container)o(s.)p 0 TeXcolorgray 0 TeXcolorgray 652 2234 a Fx(\225)p 0 TeXcolorgray 722 2234 a SDict begin H.S end 722 2234 a 0 TeXcolorgray 0 TeXcolorgray 722 2234 a SDict begin H.R end 722 2234 a 722 2234 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1Column_afcd02b475ed7c08c391bc5917a9b3f06) cvn H.B /DEST pdfmark end 722 2234 a 0 TeXcolorgray 21 w Fx(virtual)p 0 0 1 TeXcolorrgb 981 2235 a SDict begin H.S end 981 2235 a 0 0 1 TeXcolorrgb -1 x Fp(\030)p Fx(Column)p 0 0 1 TeXcolorrgb 1313 2178 a SDict begin H.R end 1313 2178 a 1313 2234 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Column_afcd02b475ed7c08c391bc5917a9b3f06) cvn H.B /ANN pdfmark end 1313 2234 a 0 TeXcolorgray 20 w Fx(\(\))p 0 TeXcolorgray 0 TeXcolorgray 840 2358 a Fl(destructor)-8 b(.)p 0 TeXcolorgray 652 2466 a Fx(\225)p 0 TeXcolorgray 41 w Fi(template)p Fg(<)p Fi(typename)21 b(T)c Fg(>)722 2566 y Fx(v)n(oid)p 0 0 1 TeXcolorrgb 889 2567 a SDict begin H.S end 889 2567 a 0 0 1 TeXcolorrgb -1 x Fx(addNullV)-9 b(alue)p 0 0 1 TeXcolorrgb 1346 2510 a SDict begin H.R end 1346 2510 a 1346 2566 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Column_a29aba21352578c3bdb94cee15e5561f0) cvn H.B /ANN pdfmark end 1346 2566 a 0 TeXcolorgray 20 w Fx(\(T)20 b(nullV)-9 b(al\))p 0 TeXcolorgray 0 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232 a SDict begin H.R end 515 232 a 515 232 a SDict begin [ /View [/XYZ H.V] /Dest (page.76) cvn H.B /DEST pdfmark end 515 232 a 0 TeXcolorgray -29 x Fy(24.12)81 b(CC\002ts::ExtHDU)19 b(Class)h(Refer)o(ence)1336 b(76)p 515 236 2865 4 v 0 TeXcolorgray 0 TeXcolorgray 0 TeXcolorgray 840 523 a Fl(r)m(ead)20 b(part)g(of)e(an)i(ima)o(g)o(e)g(arr)o(ay)l(,)f(pr)m (ocessing)h(null)f(values.)p 0 TeXcolorgray 0 TeXcolorgray 652 631 a Fx(\225)p 0 TeXcolorgray 722 631 a SDict begin H.S end 722 631 a 0 TeXcolorgray 0 TeXcolorgray 722 631 a SDict begin H.R end 722 631 a 722 631 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1ExtHDU_a37d651c1eb3f2ac633fd03a01c33573e) cvn H.B /DEST pdfmark end 722 631 a 0 TeXcolorgray 21 w Fi(template)p Fg(<)p Fi(typename)i(S)c Fg(>)722 731 y Fx(v)n(oid)p 0 0 1 TeXcolorrgb 891 732 a SDict begin H.S end 891 732 a 0 0 1 TeXcolorrgb -1 x Fx(read)p 0 0 1 TeXcolorrgb 1034 674 a SDict begin H.R end 1034 674 a 1034 731 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1ExtHDU_a37d651c1eb3f2ac633fd03a01c33573e) cvn H.B /ANN pdfmark end 1034 731 a 0 TeXcolorgray 24 w Fx(\(std::v)n(alarray)p Fu(<)j Fx(S)j Fu(>)g Fx(&image,)f(const)g(std::v)o(ector)p Fu(<)f Fx(long)h Fu(>)h Fx(&\002rstV)-9 b(erte)o(x,)722 830 y(const)20 b(std::v)o(ector)p Fu(<)f Fx(long)g Fu(>)h Fx(&lastV)-9 b(erte)o(x,)19 b(const)h(std::v)o(ector)p Fu(<)f Fx(long)g Fu(>)h Fx(&stride\))p 0 TeXcolorgray 0 TeXcolorgray 840 955 a Fl(r)m(ead)g(an)g(ima)o(g)o(e)f(subset)p 0 TeXcolorgray 0 TeXcolorgray 652 1063 a Fx(\225)p 0 TeXcolorgray 722 1063 a SDict begin H.S end 722 1063 a 0 TeXcolorgray 0 TeXcolorgray 722 1063 a SDict begin H.R end 722 1063 a 722 1063 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1ExtHDU_a8062cc5b2902b4c55991e126f52fb37b) cvn H.B /DEST pdfmark end 722 1063 a 0 TeXcolorgray 21 w Fi(template)p Fg(<)p Fi(typename)i(S)c Fg(>)722 1162 y Fx(v)n(oid)p 0 0 1 TeXcolorrgb 889 1163 a SDict begin H.S end 889 1163 a 0 0 1 TeXcolorrgb -1 x Fx(read)p 0 0 1 TeXcolorrgb 1032 1106 a SDict begin H.R end 1032 1106 a 1032 1162 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1ExtHDU_a8062cc5b2902b4c55991e126f52fb37b) cvn H.B /ANN pdfmark end 1032 1162 a 0 TeXcolorgray 21 w Fx(\(std::v)n(alarray)p Fu(<)g Fx(S)k Fu(>)g Fx(&image,)e(long)g (\002rst,)i(long)e(nElements\))p 0 TeXcolorgray 0 TeXcolorgray 840 1287 a Fl(r)m(ead)h(an)g(ima)o(g)o(e)f(section)h(starting)f(at)g(a) g(speci\002ed)h(pixel)p 0 TeXcolorgray 0 TeXcolorgray 652 1395 a Fx(\225)p 0 TeXcolorgray 722 1395 a SDict begin H.S end 722 1395 a 0 TeXcolorgray 0 TeXcolorgray 722 1395 a SDict begin H.R end 722 1395 a 722 1395 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1ExtHDU_a768bf03f9c90df0c6b8c4fc6ae227fe5) cvn H.B /DEST pdfmark end 722 1395 a 0 TeXcolorgray 21 w Fi(template)p Fg(<)p Fi(typename)h(S)c Fg(>)722 1494 y Fx(v)n(oid)p 0 0 1 TeXcolorrgb 895 1495 a SDict begin H.S end 895 1495 a 0 0 1 TeXcolorrgb -1 x Fx(read)p 0 0 1 TeXcolorrgb 1038 1438 a SDict begin H.R end 1038 1438 a 1038 1494 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1ExtHDU_a768bf03f9c90df0c6b8c4fc6ae227fe5) cvn H.B /ANN pdfmark end 1038 1494 a 0 TeXcolorgray 27 w Fx(\(std::v)n(alarray)p Fu(<)24 b Fx(S)k Fu(>)e Fx(&image,)h(const)f(std::v)o(ector)p Fu(<)f Fx(long)h Fu(>)g Fx(&\002rst,)i(long)722 1594 y(nElements\))p 0 TeXcolorgray 0 TeXcolorgray 840 1719 a Fl(r)m(ead)20 b(an)g(ima)o(g)o(e)f(section)h(starting)f(at)g(a)g (location)g(speci\002ed)i(by)e(an)g(n-tuple)p 0 TeXcolorgray 652 1826 a Fx(\225)p 0 TeXcolorgray 41 w Fi(template)p Fg(<)p Fi(typename)i(S)c Fg(>)722 1926 y Fx(v)n(oid)p 0 0 1 TeXcolorrgb 891 1927 a SDict begin H.S end 891 1927 a 0 0 1 TeXcolorrgb -1 x Fx(read)p 0 0 1 TeXcolorrgb 1034 1870 a SDict begin H.R end 1034 1870 a 1034 1926 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1ExtHDU_a8d4afc93c3eb152b88e985cadee31f42) cvn H.B /ANN pdfmark end 1034 1926 a 0 TeXcolorgray 24 w Fx(\(std::v)n(alarray)p Fu(<)j Fx(S)j Fu(>)g Fx(&image,)f(const)g(std::v)o(ector)p Fu(<)f Fx(long)h Fu(>)h Fx(&\002rstV)-9 b(erte)o(x,)722 2026 y(const)31 b(std::v)o(ector)p Fu(<)f Fx(long)g Fu(>)h Fx(&lastV)-9 b(erte)o(x,)33 b(const)e(std::v)o(ector)p Fu(<)e Fx(long)h Fu(>)i Fx(&stride,)h(S)722 2125 y Fp(\003)p Fx(nullV)-9 b(alue\))p 0 TeXcolorgray 0 TeXcolorgray 840 2250 a Fl(r)m(ead)20 b(an)g(ima)o(g)o(e)f(subset)h(into)f(valarr)o (ay)h(ima)o(g)o(e)o(,)g(pr)m(ocessing)g(null)f(values)p 0 TeXcolorgray 0 TeXcolorgray 652 2358 a Fx(\225)p 0 TeXcolorgray 722 2358 a SDict begin H.S end 722 2358 a 0 TeXcolorgray 0 TeXcolorgray 722 2358 a SDict begin H.R end 722 2358 a 722 2358 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1ExtHDU_a166d6a339f64d7d8d4715d33ea75195b) cvn H.B /DEST pdfmark end 722 2358 a 0 TeXcolorgray 16 w Fx(virtual)c(v)n(oid)p 0 0 1 TeXcolorrgb 1132 2359 a SDict begin H.S end 1132 2359 a 0 0 1 TeXcolorrgb -1 x Fx(readData)p 0 0 1 TeXcolorrgb 1432 2302 a SDict begin H.R end 1432 2302 a 1432 2358 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1ExtHDU_a166d6a339f64d7d8d4715d33ea75195b) cvn H.B /ANN pdfmark end 1432 2358 a 0 TeXcolorgray 16 w Fx(\(bool)f(readFlag=f)o(alse,)h(const)g (std::v)o(ector)p Fu(<)e Fx(String)i Fu(>)g Fx(&k)o(e)o(ys=std-)722 2457 y(::v)o(ector)p Fu(<)k Fx(String)h Fu(>)p Fx(\(\)\)=0)p 0 TeXcolorgray 0 TeXcolorgray 840 2582 a Fl(r)m(ead)g(data)g(fr)m(om)p 0 0 1 TeXcolorrgb 1301 2583 a SDict begin H.S end 1301 2583 a 0 0 1 TeXcolorrgb -1 x Fl(HDU)p 0 0 1 TeXcolorrgb 1463 2534 a SDict begin H.R end 1463 2534 a 1463 2582 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn H.B /ANN pdfmark end 1463 2582 a 0 TeXcolorgray 19 w Fl(depending)h(on)e(r)m (eadFla)o(g)h(and)g(k)o(e)n(ys.)p 0 TeXcolorgray 652 2690 a Fx(\225)p 0 TeXcolorgray 41 w(virtual)g(long)p 0 0 1 TeXcolorrgb 1128 2691 a SDict begin H.S end 1128 2691 a 0 0 1 TeXcolorrgb -1 x Fx(ro)n(ws)p 0 0 1 TeXcolorrgb 1287 2652 a SDict begin H.R end 1287 2652 a 1287 2690 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1ExtHDU_ab94cb470d13b5a574728c49589963a36) cvn H.B /ANN pdfmark end 1287 2690 a 0 TeXcolorgray 21 w Fx(\(\))g(const)p 0 TeXcolorgray 0 TeXcolorgray 840 2814 a Fl(r)m(eturn)g(the)f(number)h (of)f(r)m(ows)g(in)f(the)h(e)o(xtension.)p 0 TeXcolorgray 0 TeXcolorgray 652 2922 a Fx(\225)p 0 TeXcolorgray 722 2922 a SDict begin H.S end 722 2922 a 0 TeXcolorgray 0 TeXcolorgray 722 2922 a SDict begin H.R end 722 2922 a 722 2922 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1ExtHDU_a5e2785377c404f05dc948db844c6eec7) cvn H.B /DEST pdfmark end 722 2922 a 0 TeXcolorgray 21 w Fx(int)p 0 0 1 TeXcolorrgb 851 2923 a SDict begin H.S end 851 2923 a 0 0 1 TeXcolorrgb -1 x Fx(v)o(ersion)p 0 0 1 TeXcolorrgb 1095 2866 a SDict begin H.R end 1095 2866 a 1095 2922 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1ExtHDU_a5e2785377c404f05dc948db844c6eec7) cvn H.B /ANN pdfmark end 1095 2922 a 0 TeXcolorgray 20 w Fx(\(\))h(const)p 0 TeXcolorgray 0 TeXcolorgray 840 3047 a Fl(r)m(eturn)g(the)f(e)o(xtension)g(ver)o(sion)h(number)-8 b(.)p 0 TeXcolorgray 0 TeXcolorgray 652 3155 a Fx(\225)p 0 TeXcolorgray 722 3155 a SDict begin H.S end 722 3155 a 0 TeXcolorgray 0 TeXcolorgray 722 3155 a SDict begin H.R end 722 3155 a 722 3155 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1ExtHDU_aa01c75db71c10def95aac15f1ab31c56) cvn H.B /DEST pdfmark end 722 3155 a 0 TeXcolorgray 21 w Fx(v)n(oid)p 0 0 1 TeXcolorrgb 910 3156 a SDict begin H.S end 910 3156 a 0 0 1 TeXcolorrgb -1 x Fx(v)o(ersion)p 0 0 1 TeXcolorrgb 1153 3099 a SDict begin H.R end 1153 3099 a 1153 3155 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1ExtHDU_aa01c75db71c10def95aac15f1ab31c56) cvn H.B /ANN pdfmark end 1153 3155 a 0 TeXcolorgray 21 w Fx(\(int)20 b(v)n(alue\))p 0 TeXcolorgray 0 TeXcolorgray 840 3279 a Fl(set)f(the)g(e)o(xtension)g (ver)o(sion)h(number)p 0 TeXcolorgray 652 3387 a Fx(\225)p 0 TeXcolorgray 41 w Fi(template)p Fg(<)p Fi(typename)h(S)c Fg(>)722 3487 y Fx(v)n(oid)p 0 0 1 TeXcolorrgb 884 3488 a SDict begin H.S end 884 3488 a 0 0 1 TeXcolorrgb -1 x Fx(write)p 0 0 1 TeXcolorrgb 1055 3431 a SDict begin H.R end 1055 3431 a 1055 3487 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1ExtHDU_ab4219c7154e57612ee5969e6f9d1cf89) cvn H.B /ANN pdfmark end 1055 3487 a 0 TeXcolorgray 15 w Fx(\(const)e(std::v)o(ector)p Fu(<)f Fx(long)g Fu(>)h Fx(&\002rst,)i(long)d(nElements,)h(const)g (std::v)n(alarray)p Fu(<)722 3587 y Fx(S)21 b Fu(>)f Fx(&data,)g(S)h Fp(\003)p Fx(nullV)-9 b(alue\))p 0 TeXcolorgray 0 TeXcolorgray 840 3711 a Fl(Write)20 b(a)f(set)h(of)f(pixels)g(to)h (an)g(ima)o(g)o(e)g(e)o(xtension)g(with)f(the)h(\002r)o(st)f(pixel)h (speci\002ed)h(by)e(an)h(n-tuple)o(,)840 3802 y(pr)m(ocessing)g (unde\002ned)i(data.)p 0 TeXcolorgray 652 3910 a Fx(\225)p 0 TeXcolorgray 41 w Fi(template)p Fg(<)p Fi(typename)f(S)c Fg(>)722 4010 y Fx(v)n(oid)p 0 0 1 TeXcolorrgb 890 4011 a SDict begin H.S end 890 4011 a 0 0 1 TeXcolorrgb -1 x Fx(write)p 0 0 1 TeXcolorrgb 1061 3954 a SDict begin H.R end 1061 3954 a 1061 4010 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1ExtHDU_aa404733a67606f27fc75c26ca65c283d) cvn H.B /ANN pdfmark end 1061 4010 a 0 TeXcolorgray 22 w Fx(\(long)j(\002rst,)i(long)f(nElements,)f (const)i(std::v)n(alarray)p Fu(<)d Fx(S)j Fu(>)g Fx(&data,)f(S)h Fp(\003)p Fx(null-)722 4110 y(V)-9 b(alue\))p 0 TeXcolorgray 0 TeXcolorgray 840 4234 a Fl(write)18 b(arr)o(ay)h(to)f(ima)o(g)o(e)h (starting)f(with)f(a)i(speci\002ed)g(pixel)f(and)h(allowing)f (unde\002ned)j(data)d(to)g(be)840 4325 y(pr)m(ocessed)p 0 TeXcolorgray 0 TeXcolorgray 652 4433 a Fx(\225)p 0 TeXcolorgray 722 4433 a SDict begin H.S end 722 4433 a 0 TeXcolorgray 0 TeXcolorgray 722 4433 a SDict begin H.R end 722 4433 a 722 4433 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1ExtHDU_a7d507e3cc7d2bf23bc68091ea72467d9) cvn H.B /DEST pdfmark end 722 4433 a 0 TeXcolorgray 21 w Fi(template)p Fg(<)p Fi(typename)j(S)c Fg(>)722 4533 y Fx(v)n(oid)p 0 0 1 TeXcolorrgb 884 4534 a SDict begin H.S end 884 4534 a 0 0 1 TeXcolorrgb -1 x Fx(write)p 0 0 1 TeXcolorrgb 1055 4477 a SDict begin H.R end 1055 4477 a 1055 4533 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1ExtHDU_a7d507e3cc7d2bf23bc68091ea72467d9) cvn H.B /ANN pdfmark end 1055 4533 a 0 TeXcolorgray 15 w Fx(\(const)e(std::v)o(ector)p Fu(<)f Fx(long)g Fu(>)h Fx(&\002rst,)i(long)d(nElements,)h(const)g(std::v)n(alarray)p Fu(<)722 4633 y Fx(S)21 b Fu(>)f Fx(&data\))p 0 TeXcolorgray 0 TeXcolorgray 840 4757 a Fl(write)f(arr)o(ay)g(starting)g(fr)m(om)g (speci\002ed)h(n-tuple)o(,)f(without)g(unde\002ned)i(data)f(pr)m (ocessing)p 0 TeXcolorgray 0 TeXcolorgray 652 4865 a Fx(\225)p 0 TeXcolorgray 722 4865 a SDict begin H.S end 722 4865 a 0 TeXcolorgray 0 TeXcolorgray 722 4865 a SDict begin H.R end 722 4865 a 722 4865 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1ExtHDU_a51de27149b24a20f35c6449615380799) cvn H.B /DEST pdfmark end 722 4865 a 0 TeXcolorgray 21 w Fi(template)p Fg(<)p Fi(typename)h(S)c Fg(>)722 4965 y Fx(v)n(oid)p 0 0 1 TeXcolorrgb 889 4966 a SDict begin H.S end 889 4966 a 0 0 1 TeXcolorrgb -1 x Fx(write)p 0 0 1 TeXcolorrgb 1060 4908 a SDict begin H.R end 1060 4908 a 1060 4965 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1ExtHDU_a51de27149b24a20f35c6449615380799) cvn H.B /ANN pdfmark end 1060 4965 a 0 TeXcolorgray 20 w Fx(\(long)i(\002rst,)i(long)e(nElements,)g (const)h(std::v)n(alarray)p Fu(<)f Fx(S)i Fu(>)f Fx(&data\))p 0 TeXcolorgray 515 5156 2865 4 v 515 5255 a Fw(Generated)15 b(on)g(T)-5 b(ue)14 b(Dec)g(6)g(2011)h(16:12:51)h(f)o(or)e(CC\002ts)h (by)g(Doxygen)p 0 TeXcolorgray eop end %%Page: 77 82 TeXDict begin 77 81 bop 0 TeXcolorgray 0 0 a SDict begin /product where{pop product(Distiller)search{pop pop pop version(.)search{exch pop exch pop(3011)eq{gsave newpath 0 0 moveto closepath clip/Courier findfont 10 scalefont setfont 72 72 moveto(.)show grestore}if}{pop}ifelse}{pop}ifelse}if end 0 0 a 0 TeXcolorgray 0 TeXcolorgray 515 232 a SDict begin H.S end 515 232 a 0 TeXcolorgray 0 TeXcolorgray 515 232 a SDict begin H.R end 515 232 a 515 232 a SDict begin [ /View [/XYZ H.V] /Dest (page.77) cvn H.B /DEST pdfmark end 515 232 a 0 TeXcolorgray -29 x Fy(24.12)81 b(CC\002ts::ExtHDU)19 b(Class)h(Refer)o(ence)1336 b(77)p 515 236 2865 4 v 0 TeXcolorgray 0 TeXcolorgray 0 TeXcolorgray 840 523 a Fl(write)19 b(arr)o(ay)g(starting)g(fr)m(om)g(speci\002ed)h(pixel)f (number)-8 b(,)19 b(without)g(unde\002ned)i(data)f(pr)m(ocessing)p 0 TeXcolorgray 652 631 a Fx(\225)p 0 TeXcolorgray 41 w Fi(template)p Fg(<)p Fi(typename)h(S)c Fg(>)722 731 y Fx(v)n(oid)p 0 0 1 TeXcolorrgb 896 732 a SDict begin H.S end 896 732 a 0 0 1 TeXcolorrgb -1 x Fx(write)p 0 0 1 TeXcolorrgb 1067 674 a SDict begin H.R end 1067 674 a 1067 731 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1ExtHDU_a1f3af0a3897c9ad9d6653ca510e69852) cvn H.B /ANN pdfmark end 1067 731 a 0 TeXcolorgray 28 w Fx(\(const)26 b(std::v)o(ector)p Fu(<)g Fx(long)g Fu(>)i Fx(&\002rstV)-9 b(erte)o(x,)27 b(const)g(std::v)o(ector)p Fu(<)f Fx(long)g Fu(>)722 830 y Fx(&lastV)-9 b(erte)o(x,)19 b(const)h(std::v)n(alarray)p Fu(<)e Fx(S)j Fu(>)g Fx(&data\))p 0 TeXcolorgray 0 TeXcolorgray 840 955 a Fl(write)e(a)g(subset)g(\(g)o (ener)o(alize)h(slice\))f(of)g(data)g(to)g(the)g(ima)o(g)o(e)p 0.25 TeXcolorgray 515 1223 a Fo(Static)f(Pub)o(lic)g(Member)g (Functions)p 0 TeXcolorgray 515 1280 a SDict begin H.S end 515 1280 a 515 1280 a SDict begin 12 H.A end 515 1280 a 515 1280 a SDict begin [ /View [/XYZ H.V] /Dest (section*.22) cvn H.B /DEST pdfmark end 515 1280 a 0 TeXcolorgray 652 1412 a Fx(\225)p 0 TeXcolorgray 41 w(static)26 b(v)n(oid)p 0 0 1 TeXcolorrgb 1094 1413 a SDict begin H.S end 1094 1413 a 0 0 1 TeXcolorrgb -1 x Fx(readHduName)p 0 0 1 TeXcolorrgb 1578 1356 a SDict begin H.R end 1578 1356 a 1578 1412 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1ExtHDU_a921ed3185671c8647e844d4a60e9296f) cvn H.B /ANN pdfmark end 1578 1412 a 0 TeXcolorgray 26 w Fx(\(const)e (\002ts\002le)i Fp(\003)p Fx(fptr)m(,)e(int)h(hduInde)o(x,)e(String)h (&hduName,)722 1512 y(int)d(&hduV)-9 b(ersion\))p 0 TeXcolorgray 0 TeXcolorgray 840 1636 a Fl(r)m(ead)20 b(e)o(xtension)g(name)o(.)p 0.25 TeXcolorgray 515 1904 a Fo(Pr)o(otected)e(Member)g(Functions)p 0 TeXcolorgray 515 1961 a SDict begin H.S end 515 1961 a 515 1961 a SDict begin 12 H.A end 515 1961 a 515 1961 a SDict begin [ /View [/XYZ H.V] /Dest (section*.23) cvn H.B /DEST pdfmark end 515 1961 a 0 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(allo)n(w)h(e)o(xtensions)e(to)h(be)g(speci\002ed)g(by)p 0 0 1 TeXcolorrgb 2326 2601 a SDict begin H.S end 2326 2601 a 0 0 1 TeXcolorrgb -1 x Fx(HDU)p 0 0 1 TeXcolorrgb 2506 2546 a SDict begin H.R end 2506 2546 a 2506 2600 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn H.B /ANN pdfmark end 2506 2600 a 0 TeXcolorgray 24 w Fx(number)e(and)i(pro)o (vide)e(their)515 2700 y(name)26 b(for)h(the)g(associati)n(v)o(e)g (array)f(that)h(contains)g(them.)45 b(Alternati)n(v)o(ely)-5 b(,)27 b(if)h(there)e(is)i(no)f(name)515 2799 y(k)o(e)o(yw)o(ord)18 b(in)i(the)h(e)o(xtension,)d(one)i(is)h(synthesized)e(from)g(the)h (inde)o(x.)p 0 TeXcolorgray 2548 2799 a SDict begin H.S end 2548 2799 a 0 TeXcolorgray 0 TeXcolorgray 2548 2799 a SDict begin H.R end 2548 2799 a 2548 2799 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1ExtHDU_ab94cb470d13b5a574728c49589963a36) cvn H.B /DEST pdfmark end 2548 2799 a 0 TeXcolorgray 515 2855 a SDict begin H.S end 515 2855 a 515 2855 a SDict begin 12 H.A end 515 2855 a 515 2855 a SDict begin [ /View [/XYZ H.V] /Dest (paragraph.24.12.3.15) cvn H.B /DEST pdfmark end 515 2855 a 0.25 TeXcolorgray 128 x Fo(24.12.3.15)75 b(long)18 b(CC\002ts::ExtHDU::r)o(o)o(ws)k(\()68 b(\))18 b(const)72 b Fr([virtual])p 0 TeXcolorgray 515 3168 a Fx(return)19 b(the)h(number)e(of)i(ro)n(ws)g(in)h(the)f(e)o (xtension.)p 0 TeXcolorgray 0.25 TeXcolorgray 506 3362 a Fo(Exceptions)p 0 TeXcolorgray 0 TeXcolorgray 0 TeXcolorgray 0 TeXcolorgray 515 3319 a SDict begin H.S end 515 3319 a 515 3319 a SDict begin 12 H.A end 515 3319 a 515 3319 a SDict begin [ /View [/XYZ H.V] /Dest (table.45) cvn H.B /DEST pdfmark end 515 3319 a 0.5 TeXcolorgray 515 3422 3047 4 v 0 TeXcolorgray 0.5 TeXcolorgray 515 3422 V 0 TeXcolorgray 0.5 TeXcolorgray 515 3522 4 100 v 0 TeXcolorgray 1 TeXcolorgray 518 3522 774 100 v 0 TeXcolorgray 0 0 1 TeXcolorrgb 558 3509 a SDict begin H.S end 558 3509 a 0 0 1 TeXcolorrgb -17 x Ft(Wr)l(ongExtensionT)-6 b(ype)p 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a SDict begin H.S end 515 3902 a 0 TeXcolorgray 0 TeXcolorgray 515 3902 a SDict begin H.R end 515 3902 a 515 3902 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1ExtHDU_ab4219c7154e57612ee5969e6f9d1cf89) cvn H.B /DEST pdfmark end 515 3902 a 0 TeXcolorgray 515 3939 a SDict begin H.S end 515 3939 a 515 3939 a SDict begin 12 H.A end 515 3939 a 515 3939 a SDict begin [ /View [/XYZ H.V] /Dest (paragraph.24.12.3.16) cvn H.B /DEST pdfmark end 515 3939 a 0.25 TeXcolorgray 147 x Fo(24.12.3.16)75 b(template)p Fu(<)p Fo(typename)21 b(S)c Fu(>)g Fo(v)n(oid)i(CC\002ts::ExtHDU::write)i(\()35 b(const)19 b(std::vector)p Fu(<)g Fo(long)g Fu(>)e Fo(&)879 4186 y Fk(\002r)o(st,)35 b Fo(long)18 b Fk(nElements,)36 b Fo(const)19 b(std::v)o(alarra)o(y)p Fu(<)f Fo(S)f Fu(>)f Fo(&)h Fk(data,)35 b Fo(S)17 b Fp(\003)g Fk(n)o(ullV)l(alue)35 b Fo(\))p 0 TeXcolorgray 515 4370 a Fx(Write)22 b(a)h(set)g(of)e(pix)o (els)h(to)g(an)g(image)g(e)o(xtension)e(with)j(the)f(\002rst)g(pix)o 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Fx(e)o(xception)15 b(if)i(not.)24 b(Where)16 b(appropriate,)f (alternate)515 4816 y(v)o(ersions)k(allo)n(w)h(unde\002ned)e(data)i(to) h(be)f(processed)p 0 TeXcolorgray 515 5156 2865 4 v 515 5255 a Fw(Generated)15 b(on)g(T)-5 b(ue)14 b(Dec)g(6)g(2011)h(16:12:51) h(f)o(or)e(CC\002ts)h(by)g(Doxygen)p 0 TeXcolorgray eop end %%Page: 83 88 TeXDict begin 83 87 bop 0 TeXcolorgray 0 0 a SDict begin /product where{pop product(Distiller)search{pop pop pop version(.)search{exch pop exch pop(3011)eq{gsave newpath 0 0 moveto closepath clip/Courier findfont 10 scalefont setfont 72 72 moveto(.)show grestore}if}{pop}ifelse}{pop}ifelse}if end 0 0 a 0 TeXcolorgray 0 TeXcolorgray 515 232 a SDict begin H.S end 515 232 a 0 TeXcolorgray 0 TeXcolorgray 515 232 a SDict begin H.R end 515 232 a 515 232 a SDict begin [ /View [/XYZ H.V] /Dest (page.83) cvn H.B /DEST pdfmark end 515 232 a 0 TeXcolorgray -29 x Fy(24.12)81 b(CC\002ts::ExtHDU)19 b(Class)h(Refer)o(ence)1336 b(83)p 515 236 2865 4 v 0 TeXcolorgray 0 TeXcolorgray 0.25 TeXcolorgray 506 494 a Fo(P)n(arameter)o(s)p 0 TeXcolorgray 0 TeXcolorgray 0 TeXcolorgray 0.25 TeXcolorgray 0 TeXcolorgray 0 TeXcolorgray 515 436 a SDict begin H.S end 515 436 a 515 436 a SDict begin 12 H.A end 515 436 a 515 436 a SDict begin [ /View [/XYZ H.V] /Dest (table.46) cvn H.B /DEST pdfmark end 515 436 a 0.5 TeXcolorgray 515 539 2889 4 v 0 TeXcolorgray 0.5 TeXcolorgray 515 539 V 0 TeXcolorgray 0.5 TeXcolorgray 515 738 4 200 v 0 TeXcolorgray 848 609 a Ft(\002r)o(st)p 0.5 TeXcolorgray 1005 738 V 0 TeXcolorgray 61 w Fx(an)26 b(n-tuple)e(of)i(dimension)e(equal)h(to)h(the)g(image)f(dimension)g (specifying)f(the)1037 708 y(\002rst)d(pix)o(el)e(in)i(the)f(range)f (to)h(be)h(written)p 0.5 TeXcolorgray 3400 738 V 0 TeXcolorgray 0.5 TeXcolorgray 515 742 2889 4 v 0 TeXcolorgray 0.5 TeXcolorgray 515 742 V 0 TeXcolorgray 0.5 TeXcolorgray 515 841 4 100 v 0 TeXcolorgray 630 811 a Ft(nElements)p 0.5 TeXcolorgray 1005 841 V 0 TeXcolorgray 60 w Fx(number)d(of)i(pix)o 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2524 a 0 TeXcolorgray 21 w Fx(\002ts\002le)21 b Fp(\003)p 0 0 1 TeXcolorrgb 1034 2525 a SDict begin H.S end 1034 2525 a 0 0 1 TeXcolorrgb -1 x Fx(\002tsPointer)p 0 0 1 TeXcolorrgb 1375 2468 a SDict begin H.R end 1375 2468 a 1375 2524 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITS_a10cc4bf1ef07a50ea79d3bfaa57a844f) cvn H.B /ANN pdfmark end 1375 2524 a 0 TeXcolorgray 21 w Fx(\(\))f(const)p 0 TeXcolorgray 0 TeXcolorgray 840 2648 a Fl(r)m(eturn)g(the)f(CFITSIO)f(\002ts\002le)h(pointer)h(for)e (this)p 0 0 1 TeXcolorrgb 2114 2649 a SDict begin H.S end 2114 2649 a 0 0 1 TeXcolorrgb -1 x Fl(FITS)p 0 0 1 TeXcolorrgb 2264 2598 a SDict begin H.R end 2264 2598 a 2264 2648 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITS) cvn H.B /ANN pdfmark end 2264 2648 a 0 TeXcolorgray 18 w Fl(object)p 0 TeXcolorgray 652 2756 a Fx(\225)p 0 TeXcolorgray 41 w(v)n(oid)p 0 0 1 TeXcolorrgb 889 2757 a SDict begin H.S end 889 2757 a 0 0 1 TeXcolorrgb -1 x Fx(\003ush)p 0 0 1 TeXcolorrgb 1050 2700 a SDict begin H.R end 1050 2700 a 1050 2756 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITS_a2df185878082d2dabe76f3f25600311b) cvn H.B /ANN pdfmark end 1050 2756 a 0 TeXcolorgray 21 w Fx(\(\))p 0 TeXcolorgray 0 TeXcolorgray 840 2881 a Fl(\003ush)i(b)o(uf)o(fer)f(contents)g(to)g (disk)p 0 TeXcolorgray 0 TeXcolorgray 652 2989 a Fx(\225)p 0 TeXcolorgray 722 2989 a SDict begin H.S end 722 2989 a 0 TeXcolorgray 0 TeXcolorgray 722 2989 a SDict begin H.R end 722 2989 a 722 2989 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1FITS_a785184269e4cdf607cb844b5b45ad105) cvn H.B /DEST pdfmark end 722 2989 a 0 TeXcolorgray 21 w Fx(int)p 0 0 1 TeXcolorrgb 851 3007 a SDict begin H.S end 851 3007 a 0 0 1 TeXcolorrgb -18 x Fx(getCompressionT)-7 b(ype)p 0 0 1 TeXcolorrgb 1555 2933 a SDict begin H.R end 1555 2933 a 1555 2989 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITS_a785184269e4cdf607cb844b5b45ad105) cvn H.B /ANN pdfmark end 1555 2989 a 0 TeXcolorgray 21 w Fx(\(\))20 b(const)p 0 TeXcolorgray 0 TeXcolorgray 840 3113 a Fl(Get)k(the)g(int)g (specifying)h(the)f(compr)m(ession)i(algorithm)e(to)g(be)h(used)f(when) h(adding)g(an)g(ima)o(g)o(e)840 3205 y(e)o(xtension.)p 0 TeXcolorgray 0 TeXcolorgray 652 3313 a Fx(\225)p 0 TeXcolorgray 722 3313 a SDict begin H.S end 722 3313 a 0 TeXcolorgray 0 TeXcolorgray 722 3313 a SDict begin H.R end 722 3313 a 722 3313 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1FITS_a4af2b8fb489f7fbfeabc1a381c94834c) cvn H.B /DEST pdfmark end 722 3313 a 0 TeXcolorgray 21 w Fx(int)p 0 0 1 TeXcolorrgb 851 3331 a SDict begin H.S end 851 3331 a 0 0 1 TeXcolorrgb -18 x Fx(getNoiseBits)p 0 0 1 TeXcolorrgb 1280 3256 a SDict begin H.R end 1280 3256 a 1280 3313 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITS_a4af2b8fb489f7fbfeabc1a381c94834c) cvn H.B /ANN pdfmark end 1280 3313 a 0 TeXcolorgray 21 w Fx(\(\))20 b(const)p 0 TeXcolorgray 0 TeXcolorgray 840 3437 a Fl(Get)f(the)g(c\002tsio)g(noisebits)h(par)o(ameter)f(used)h (when)f(compr)m(essing)i(\003oating-point)g(ima)o(g)o(es.)p 0 TeXcolorgray 652 3545 a Fx(\225)p 0 TeXcolorgray 41 w(v)n(oid)p 0 0 1 TeXcolorrgb 889 3563 a SDict begin H.S end 889 3563 a 0 0 1 TeXcolorrgb -18 x Fx(getT)m(ileDimensions)p 0 0 1 TeXcolorrgb 1518 3489 a SDict begin H.R end 1518 3489 a 1518 3545 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITS_a879b8f7cb81cfbc781e8a7b6c6982ca9) cvn H.B /ANN pdfmark end 1518 3545 a 0 TeXcolorgray 21 w Fx(\(std::v)o(ector)p Fu(<)d Fx(long)h Fu(>)i Fx(&tileSizes\))f (const)p 0 TeXcolorgray 0 TeXcolorgray 840 3670 a Fl(Get)f(the)g(curr)m (ent)h(settings)f(of)g(dimension)h(sizes)e(for)h(tiles)f(used)i(in)f (ima)o(g)o(e)h(compr)m(ession.)p 0 TeXcolorgray 0 TeXcolorgray 652 3778 a Fx(\225)p 0 TeXcolorgray 722 3778 a SDict begin H.S end 722 3778 a 0 TeXcolorgray 0 TeXcolorgray 722 3778 a SDict begin H.R end 722 3778 a 722 3778 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1FITS_a46ee9a7cb851501eb921149f1173d11d) cvn H.B /DEST pdfmark end 722 3778 a 0 TeXcolorgray 21 w Fx(const)g(String)g(&)p 0 0 1 TeXcolorrgb 1248 3779 a SDict begin H.S end 1248 3779 a 0 0 1 TeXcolorrgb -1 x Fx(name)p 0 0 1 TeXcolorrgb 1428 3739 a SDict begin H.R end 1428 3739 a 1428 3778 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITS_a46ee9a7cb851501eb921149f1173d11d) cvn H.B /ANN pdfmark end 1428 3778 a 0 TeXcolorgray 21 w Fx(\(\))g(const)p 0 TeXcolorgray 0 TeXcolorgray 840 3902 a Fl(r)m(eturn)g(\002lename)g (of)f(\002le)g(corr)m(esponding)i(to)p 0 0 1 TeXcolorrgb 2030 3903 a SDict begin H.S end 2030 3903 a 0 0 1 TeXcolorrgb -1 x Fl(FITS)p 0 0 1 TeXcolorrgb 2180 3851 a SDict begin H.R end 2180 3851 a 2180 3902 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITS) cvn H.B /ANN pdfmark end 2180 3902 a 0 TeXcolorgray 18 w Fl(object)p 0 TeXcolorgray 0 TeXcolorgray 652 4010 a Fx(\225)p 0 TeXcolorgray 722 4010 a SDict begin H.S end 722 4010 a 0 TeXcolorgray 0 TeXcolorgray 722 4010 a SDict begin H.R end 722 4010 a 722 4010 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1FITS_a18d1d822d3eecbf6298f974504863c05) cvn H.B /DEST pdfmark end 722 4010 a 0 TeXcolorgray 21 w Fx(const)p 0 0 1 TeXcolorrgb 939 4011 a SDict begin H.S end 939 4011 a 0 0 1 TeXcolorrgb -1 x Fx(PHDU)p 0 0 1 TeXcolorrgb 1165 3956 a SDict begin H.R end 1165 3956 a 1165 4010 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1PHDU) cvn H.B /ANN pdfmark end 1165 4010 a 0 TeXcolorgray 21 w Fx(&)p 0 0 1 TeXcolorrgb 1271 4028 a SDict begin H.S end 1271 4028 a 0 0 1 TeXcolorrgb -18 x Fx(pHDU)p 0 0 1 TeXcolorrgb 1492 3956 a SDict begin H.R end 1492 3956 a 1492 4010 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITS_a18d1d822d3eecbf6298f974504863c05) cvn H.B /ANN pdfmark end 1492 4010 a 0 TeXcolorgray 21 w Fx(\(\))f(const)p 0 TeXcolorgray 0 TeXcolorgray 840 4134 a Fl(r)m(eturn)g(a)f(const)h(r)m(efer)m(ence)g(to)f(the)g (primary)p 0 0 1 TeXcolorrgb 2017 4135 a SDict begin H.S end 2017 4135 a 0 0 1 TeXcolorrgb -1 x Fl(HDU)p 0 0 1 TeXcolorrgb 2179 4086 a SDict begin H.R end 2179 4086 a 2179 4134 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn H.B /ANN pdfmark end 2179 4134 a 0 TeXcolorgray Fl(.)p 0 TeXcolorgray 0 TeXcolorgray 652 4242 a Fx(\225)p 0 TeXcolorgray 722 4242 a SDict begin H.S end 722 4242 a 0 TeXcolorgray 0 TeXcolorgray 722 4242 a SDict begin H.R end 722 4242 a 722 4242 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1FITS_a69714491156b3f1452f37f9277505925) cvn H.B /DEST pdfmark end 722 4242 a 0 TeXcolorgray 0 0 1 TeXcolorrgb 743 4243 a SDict begin H.S end 743 4243 a 0 0 1 TeXcolorrgb -1 x Fx(PHDU)p 0 0 1 TeXcolorrgb 969 4188 a SDict begin H.R end 969 4188 a 969 4242 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1PHDU) cvn H.B /ANN pdfmark end 969 4242 a 0 TeXcolorgray 21 w Fx(&)p 0 0 1 TeXcolorrgb 1075 4260 a SDict begin H.S end 1075 4260 a 0 0 1 TeXcolorrgb -18 x Fx(pHDU)p 0 0 1 TeXcolorrgb 1296 4188 a SDict begin H.R end 1296 4188 a 1296 4242 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITS_a69714491156b3f1452f37f9277505925) cvn H.B /ANN pdfmark end 1296 4242 a 0 TeXcolorgray 21 w Fx(\(\))p 0 TeXcolorgray 0 TeXcolorgray 840 4367 a Fl(r)m(eturn)h(a)f(r)m(efer)m(ence)h(to)f(the)g(primary)p 0 0 1 TeXcolorrgb 1841 4368 a SDict begin H.S end 1841 4368 a 0 0 1 TeXcolorrgb -1 x Fl(HDU)p 0 0 1 TeXcolorrgb 2003 4319 a SDict begin H.R end 2003 4319 a 2003 4367 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn H.B /ANN pdfmark end 2003 4367 a 0 TeXcolorgray Fl(.)p 0 TeXcolorgray 652 4475 a Fx(\225)p 0 TeXcolorgray 41 w(v)n(oid)p 0 0 1 TeXcolorrgb 886 4476 a SDict begin H.S end 886 4476 a 0 0 1 TeXcolorrgb -1 x Fx(read)p 0 0 1 TeXcolorrgb 1029 4419 a SDict begin H.R end 1029 4419 a 1029 4475 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITS_a3640e3ad1c29931b37a13ac91106504e) cvn H.B /ANN pdfmark end 1029 4475 a 0 TeXcolorgray 18 w Fx(\(const)f(String)f (&hduName,)f(bool)g(readDataFlag=f)o(alse,)h(const)g(std::v)o(ector)p Fu(<)722 4575 y Fx(String)j Fu(>)g Fx(&k)o(e)o(ys=std::v)o(ector)p Fu(<)d Fx(String)j Fu(>)p Fx(\(\),)f(int)i(v)o(ersion=1\))p 0 TeXcolorgray 0 TeXcolorgray 840 4699 a Fl(g)o(et)f(data)f(fr)m(om)g (single)p 0 0 1 TeXcolorrgb 1455 4700 a SDict begin H.S end 1455 4700 a 0 0 1 TeXcolorrgb -1 x Fl(HDU)p 0 0 1 TeXcolorrgb 1617 4651 a SDict begin H.R end 1617 4651 a 1617 4699 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn H.B /ANN pdfmark end 1617 4699 a 0 TeXcolorgray 18 w Fl(fr)m(om)g(disk)g(\002le)o(.)p 0 TeXcolorgray 652 4807 a Fx(\225)p 0 TeXcolorgray 41 w(v)n(oid)p 0 0 1 TeXcolorrgb 886 4808 a SDict begin H.S end 886 4808 a 0 0 1 TeXcolorrgb -1 x Fx(read)p 0 0 1 TeXcolorrgb 1029 4751 a SDict begin H.R end 1029 4751 a 1029 4807 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITS_ac592041903c94b09cee8cdc29e185b0a) cvn H.B /ANN pdfmark end 1029 4807 a 0 TeXcolorgray 18 w Fx(\(const)e(std::v)o (ector)p Fu(<)f Fx(String)h Fu(>)h Fx(&hduNames,)e(bool)h (readDataFlag=f)o(alse\))p 0 TeXcolorgray 0 TeXcolorgray 840 4932 a Fl(g)o(et)j(data)f(fr)m(om)g(a)g(set)f(of)h(HDUs)g(fr)m(om)f (disk)h(\002le)o(.)p 0 TeXcolorgray 515 5156 2865 4 v 515 5255 a Fw(Generated)c(on)g(T)-5 b(ue)14 b(Dec)g(6)g(2011)h (16:12:51)h(f)o(or)e(CC\002ts)h(by)g(Doxygen)p 0 TeXcolorgray eop end %%Page: 88 93 TeXDict begin 88 92 bop 0 TeXcolorgray 0 0 a SDict begin /product where{pop product(Distiller)search{pop pop pop version(.)search{exch pop exch pop(3011)eq{gsave newpath 0 0 moveto closepath clip/Courier findfont 10 scalefont setfont 72 72 moveto(.)show grestore}if}{pop}ifelse}{pop}ifelse}if end 0 0 a 0 TeXcolorgray 0 TeXcolorgray 515 232 a SDict begin H.S end 515 232 a 0 TeXcolorgray 0 TeXcolorgray 515 232 a SDict begin H.R end 515 232 a 515 232 a SDict begin [ /View [/XYZ H.V] /Dest (page.88) cvn H.B /DEST pdfmark end 515 232 a 0 TeXcolorgray -29 x Fy(24.14)81 b(CC\002ts::FITS)20 b(Class)h(Refer)o(ence)1460 b(88)p 515 236 2865 4 v 0 TeXcolorgray 0 TeXcolorgray 652 523 a Fx(\225)p 0 TeXcolorgray 41 w(v)n(oid)p 0 0 1 TeXcolorrgb 904 524 a SDict begin H.S end 904 524 a 0 0 1 TeXcolorrgb -1 x Fx(read)p 0 0 1 TeXcolorrgb 1047 467 a SDict begin H.R end 1047 467 a 1047 523 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITS_a6e3ebb1d61fd6374c0f1033ba0777112) cvn H.B /ANN pdfmark end 1047 523 a 0 TeXcolorgray 37 w Fx(\(const)35 b(std::v)o(ector)p Fu(<)f Fx(String)h Fu(>)h Fx(&hduNames,)h(const)e(std::v)o(ector)p Fu(<)f Fx(std-)722 623 y(::v)o(ector)p Fu(<)28 b Fx(String)i Fu(>)g(>)f Fx(&k)o(e)o(ys,)i(bool)e(readDataFlag=f)o(alse,)i(const)e (std::v)o(ector)p Fu(<)f Fx(int)722 722 y Fu(>)21 b Fx(&hduV)-9 b(ersions=std::v)o(ector)p Fu(<)15 b Fx(int)20 b Fu(>)p Fx(\(\)\))p 0 TeXcolorgray 0 TeXcolorgray 840 847 a Fl(g)o(et)g(data)f (fr)m(om)g(a)g(set)f(of)h(HDUs)g(fr)m(om)f(disk)h(\002le)o(,)g (specifying)h(k)o(e)n(ys)f(and)h(ver)o(sion)g(number)o(s.)p 0 TeXcolorgray 652 955 a Fx(\225)p 0 TeXcolorgray 41 w(v)n(oid)p 0 0 1 TeXcolorrgb 895 956 a SDict begin H.S end 895 956 a 0 0 1 TeXcolorrgb -1 x Fx(read)p 0 0 1 TeXcolorrgb 1038 898 a SDict begin H.R end 1038 898 a 1038 955 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITS_adafc3aecf2d2398109d2c42f6025f2e5) cvn H.B /ANN pdfmark end 1038 955 a 0 TeXcolorgray 27 w Fx(\(int)26 b(hduInde)o(x,)e(bool)i(readDataFlag=f)o(alse,)g(const)g (std::v)o(ector)p Fu(<)f Fx(String)g Fu(>)722 1054 y Fx(&k)o(e)o(ys=std::v)o(ector)p Fu(<)17 b Fx(String)j Fu(>)p Fx(\(\)\))p 0 TeXcolorgray 0 TeXcolorgray 840 1179 a Fl(r)m(ead)g(an)p 0 0 1 TeXcolorrgb 1087 1180 a SDict begin H.S end 1087 1180 a 0 0 1 TeXcolorrgb -1 x Fl(HDU)p 0 0 1 TeXcolorrgb 1249 1131 a SDict begin H.R end 1249 1131 a 1249 1179 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn H.B /ANN pdfmark end 1249 1179 a 0 TeXcolorgray 18 w Fl(speci\002ed)g(by)g(inde)o(x)f(number)-8 b(.)p 0 TeXcolorgray 652 1287 a Fx(\225)p 0 TeXcolorgray 41 w(v)n(oid)p 0 0 1 TeXcolorrgb 893 1288 a SDict begin H.S end 893 1288 a 0 0 1 TeXcolorrgb -1 x Fx(read)p 0 0 1 TeXcolorrgb 1036 1231 a SDict begin H.R end 1036 1231 a 1036 1287 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITS_a6237260607e157ec5f521522f137f09c) cvn H.B /ANN pdfmark end 1036 1287 a 0 TeXcolorgray 25 w Fx(\(const)24 b(std::v)o(ector)p Fu(<)f Fx(String)h Fu(>)h Fx(&searchK)n(e)o(ys,)f(const)g(std::v)o(ector)p Fu(<)f Fx(String)722 1386 y Fu(>)f Fx(&searchV)-9 b(alues,)21 b(bool)g(readDataFlag=f)o(alse,)g(const)h(std::v)o(ector)p Fu(<)f Fx(String)g Fu(>)h Fx(&hdu-)722 1486 y(K)n(e)o(ys=std::v)o (ector)p Fu(<)c Fx(String)i Fu(>)p Fx(\(\),)f(int)h(v)o(ersion=1\))p 0 TeXcolorgray 0 TeXcolorgray 840 1611 a Fl(r)m(ead)g(method)g(for)f(r) m(ead)h(header)g(or)p 0 0 1 TeXcolorrgb 1802 1612 a SDict begin H.S end 1802 1612 a 0 0 1 TeXcolorrgb -1 x Fl(HDU)p 0 0 1 TeXcolorrgb 1964 1563 a SDict begin H.R end 1964 1563 a 1964 1611 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn H.B /ANN pdfmark end 1964 1611 a 0 TeXcolorgray 18 w Fl(that)f(contains)h(speci\002ed)g(k)o(e)n(ywor)m(ds.)p 0 TeXcolorgray 0 TeXcolorgray 652 1719 a Fx(\225)p 0 TeXcolorgray 722 1719 a SDict begin H.S end 722 1719 a 0 TeXcolorgray 0 TeXcolorgray 722 1719 a SDict begin H.R end 722 1719 a 722 1719 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1FITS_a9d5050b4a572ea98e0c830295894c142) cvn H.B /DEST pdfmark end 722 1719 a 0 TeXcolorgray 21 w Fx(v)n(oid)p 0 0 1 TeXcolorrgb 910 1720 a SDict begin H.S end 910 1720 a 0 0 1 TeXcolorrgb -1 x Fx(resetPosition)p 0 0 1 TeXcolorrgb 1339 1662 a SDict begin H.R end 1339 1662 a 1339 1719 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITS_a9d5050b4a572ea98e0c830295894c142) cvn H.B /ANN pdfmark end 1339 1719 a 0 TeXcolorgray 20 w Fx(\(\))p 0 TeXcolorgray 0 TeXcolorgray 840 1843 a Fl(e)o(xplicit)f(call)f(to)h(set)g(the)g(\002ts)g(\002le)g(pointer)g (to)g(the)g(primary)l(.)p 0 TeXcolorgray 652 1951 a Fx(\225)p 0 TeXcolorgray 41 w(v)n(oid)p 0 0 1 TeXcolorrgb 889 1969 a SDict begin H.S end 889 1969 a 0 0 1 TeXcolorrgb -18 x Fx(setCompressionT)-7 b(ype)p 0 0 1 TeXcolorrgb 1583 1895 a SDict begin H.R end 1583 1895 a 1583 1951 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITS_ad65169c171ad79257367716d8f93b3f2) cvn H.B /ANN pdfmark end 1583 1951 a 0 TeXcolorgray 21 w Fx(\(int)20 b(compT)-7 b(ype\))p 0 TeXcolorgray 0 TeXcolorgray 840 2076 a Fl(set)21 b(the)h(compr)m(ession)h(algorithm)f(to)f(be)g(used)i(when)e(adding)i (ima)o(g)o(e)f(e)o(xtensions)g(to)f(the)p 0 0 1 TeXcolorrgb 3230 2077 a SDict begin H.S end 3230 2077 a 0 0 1 TeXcolorrgb -1 x Fl(FITS)p 0 0 1 TeXcolorrgb 3379 2025 a SDict begin H.R end 3379 2025 a 3379 2076 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITS) cvn H.B /ANN pdfmark end 3379 2076 a 0 TeXcolorgray 840 2167 a Fl(object.)p 0 TeXcolorgray 652 2275 a Fx(\225)p 0 TeXcolorgray 41 w(v)n(oid)p 0 0 1 TeXcolorrgb 889 2276 a SDict begin H.S end 889 2276 a 0 0 1 TeXcolorrgb -1 x Fx(setNoiseBits)p 0 0 1 TeXcolorrgb 1309 2219 a SDict begin H.R end 1309 2219 a 1309 2275 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link 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SDict begin [ /View [/XYZ H.V] /Dest (paragraph.24.14.3.1) cvn H.B /DEST pdfmark end 515 3148 a 0.25 TeXcolorgray 147 x Fo(24.14.3.1)75 b(v)n(oid)18 b(CC\002ts::FITS::ad)o(dIma)o(g)r(e) k(\()34 b(const)18 b(String)g(&)f Fk(hduName)q(,)35 b Fo(int)18 b Fk(bpix,)35 b Fo(std::vector)p Fu(<)18 b Fo(long)g Fu(>)845 3395 y Fo(&)f Fk(nax)o(es,)35 b Fo(int)18 b Fk(ver)o(sion)g(=)f Fr(1)34 b Fo(\))p 0 TeXcolorgray 515 3579 a Fx(Add)19 b(an)i(image)e(e)o(xtension)g(to)h(an)g(e)o (xisting)p 0 0 1 TeXcolorrgb 1806 3580 a SDict begin H.S end 1806 3580 a 0 0 1 TeXcolorrgb -1 x Fx(FITS)p 0 0 1 TeXcolorrgb 1977 3523 a SDict begin H.R end 1977 3523 a 1977 3579 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITS) cvn H.B /ANN pdfmark end 1977 3579 a 0 TeXcolorgray 20 w Fx(object.)25 b(\(File)20 b(with)h(w)f(or)g(rw)h(access\).)515 3726 y(Does)c(not)f(mak)o(e)h(primary)e(images,)i(which)g(are)g(b)n (uilt)g(in)g(the)g(constructor)e(for)h(the)p 0 0 1 TeXcolorrgb 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b(Refer)o(ence)100 b(107)p 515 236 2865 4 v 0 TeXcolorgray 515 440 a SDict begin H.S end 515 440 a 515 440 a SDict begin 12 H.A end 515 440 a 515 440 a SDict begin [ /View [/XYZ H.V] /Dest (subsubsection.24.21.1) cvn H.B /DEST pdfmark end 515 440 a 0.25 TeXcolorgray 83 x Fo(24.21.1)75 b(Detailed)18 b(Description)p 0 TeXcolorgray 515 726 a Fx([)o(potential])h(base)i(class)g(for)e(e)o(xceptions)g(to)h (be)g(thro)n(wn)f(on)h(internal)f(library)h(error)-5 b(.)515 873 y(As)21 b(of)g(this)g(v)o(ersion)f(there)g(are)h(no)f (subclasses.)28 b(This)21 b(error)e(requests)i(that)g(the)f(user)h (reports)f(this)515 972 y(circumstance)f(to)h(HEASARC.)515 1095 y SDict begin H.S end 515 1095 a 515 1095 a SDict begin 12 H.A end 515 1095 a 515 1095 a SDict begin [ /View [/XYZ H.V] /Dest (subsubsection.24.21.2) cvn H.B /DEST pdfmark end 515 1095 a 0.25 TeXcolorgray 146 x Fo(24.21.2)75 b(Constructor)19 b(&)f(Destructor)h(Documentation)p 0 TeXcolorgray 0 TeXcolorgray 515 1444 a SDict begin H.S end 515 1444 a 0 TeXcolorgray 0 TeXcolorgray 515 1444 a SDict begin H.R end 515 1444 a 515 1444 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1FitsFatal_a42ba5b32d85531fa7570c2345c929f7a) cvn H.B /DEST pdfmark end 515 1444 a 0 TeXcolorgray 515 1481 a SDict begin H.S end 515 1481 a 515 1481 a SDict begin 12 H.A end 515 1481 a 515 1481 a SDict begin [ /View [/XYZ H.V] /Dest (paragraph.24.21.2.1) cvn H.B /DEST pdfmark end 515 1481 a 0.25 TeXcolorgray 147 x Fo(24.21.2.1)75 b(CC\002ts::FitsF)o(atal::FitsF)o(at)q(al)23 b(\()34 b(const)19 b(string)f(&)f Fk(dia)o(g)35 b Fo(\))p 0 TeXcolorgray 515 1812 a Fx(Prints)20 b(a)h(message)f(starting)g(")p Fp(\003\003\003)f Fx(CC\002ts)j(F)o(atal)e(Error:)k(...")c(and)g(calls) h Ft(terminate\(\))p 0 TeXcolorgray 0.25 TeXcolorgray 506 2022 a Fo(P)n(arameter)o(s)p 0 TeXcolorgray 0 TeXcolorgray 0 TeXcolorgray 0.25 TeXcolorgray 0 TeXcolorgray 0 TeXcolorgray 515 1965 a SDict begin H.S end 515 1965 a 515 1965 a SDict begin 12 H.A end 515 1965 a 515 1965 a SDict begin [ /View [/XYZ H.V] /Dest (table.72) cvn H.B /DEST pdfmark end 515 1965 a 0.5 TeXcolorgray 515 2068 2889 4 v 0 TeXcolorgray 0.5 TeXcolorgray 515 2068 V 0 TeXcolorgray 0.5 TeXcolorgray 515 2167 4 100 v 0 TeXcolorgray 830 2137 a Ft(dia)o(g)p 0.5 TeXcolorgray 1005 2167 V 0 TeXcolorgray 59 w Fx(A)g(diagnostic)e (string)h(to)g(be)g(printed)f(identifying)f(the)i(conte)o(xt)f(of)h (the)g(error)-5 b(.)p 0.5 TeXcolorgray 3400 2167 V 0 TeXcolorgray 0.5 TeXcolorgray 515 2171 2889 4 v 0 TeXcolorgray 0.5 TeXcolorgray 515 2171 V 0 TeXcolorgray 515 2401 a(The)20 b(documentation)d(for)i(this)i(class)g(w)o(as)g(generated)e(from)g(the) h(follo)n(wing)f(\002les:)p 0 TeXcolorgray 652 2614 a(\225)p 0 TeXcolorgray 41 w(FitsError)-5 b(.h)p 0 TeXcolorgray 652 2722 a(\225)p 0 TeXcolorgray 41 w(FitsError)g(.cxx)p 0 TeXcolorgray 515 2935 a SDict begin H.S end 515 2935 a 0 TeXcolorgray 0 TeXcolorgray 515 2935 a SDict begin H.R end 515 2935 a 515 2935 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr) cvn H.B /DEST pdfmark end 515 2935 a 0 TeXcolorgray 515 3056 a SDict begin H.S end 515 3056 a 515 3056 a SDict begin 12 H.A end 515 3056 a 515 3056 a SDict begin [ /View [/XYZ H.V] /Dest (subsection.24.22) cvn H.B /DEST pdfmark end 515 3056 a 0.25 TeXcolorgray 164 x Fq(24.22)89 b(CC\002ts::FITSUtil::auto)p 1536 3220 27 4 v 37 w(arra)o(y)p 1753 3220 V 31 w(ptr)p Fa(<)21 b Fq(X)f Fa(>)h Fq(Class)g(T)l(emplate)g(Ref)o(erence)p 0 TeXcolorgray 515 3423 a Fx(A)f(class)i(that)e(mimics)g(the)g(std::)26 b(library)19 b(auto_ptr)g(class,)i(b)n(ut)f(w)o(orks)g(with)g(arrays.) 515 3570 y Fr(#include)48 b Fu(<)p Fr(FITSUtil.h)p Fu(>)p 0.25 TeXcolorgray 515 3838 a Fo(Pub)o(lic)18 b(Member)g(Functions)p 0 TeXcolorgray 515 3895 a SDict begin H.S end 515 3895 a 515 3895 a SDict begin 12 H.A end 515 3895 a 515 3895 a SDict begin [ /View [/XYZ H.V] /Dest (section*.35) cvn H.B /DEST pdfmark end 515 3895 a 0 TeXcolorgray 0 TeXcolorgray 652 4027 a Fx(\225)p 0 TeXcolorgray 722 4027 a SDict begin H.S end 722 4027 a 0 TeXcolorgray 0 TeXcolorgray 722 4027 a SDict begin H.R end 722 4027 a 722 4027 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_aa7eff76215f0bd5ac0aec23c39b903fe) cvn H.B /DEST pdfmark end 722 4027 a 0 TeXcolorgray 0 0 1 TeXcolorrgb 743 4045 a SDict begin H.S end 743 4045 a 0 0 1 TeXcolorrgb -18 x Fx(auto_array_ptr)p 0 0 1 TeXcolorrgb 1232 3980 a SDict begin H.R end 1232 3980 a 1232 4027 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_aa7eff76215f0bd5ac0aec23c39b903fe) cvn H.B /ANN pdfmark end 1232 4027 a 0 TeXcolorgray 21 w Fx(\(X)i Fp(\003)p Fx(p=0\))f(thro)n(w) g(\(\))p 0 TeXcolorgray 0 TeXcolorgray 840 4151 a Fl(constructor)-8 b(.)24 b(allows)19 b(cr)m(eation)h(of)f(pointer)h(to)e(null,)h(can)h (be)f(modi\002ed)h(by)p 0 0 1 TeXcolorrgb 2820 4164 a SDict begin H.S end 2820 4164 a 0 0 1 TeXcolorrgb -13 x Fl(r)m(eset\(\))p 0 0 1 TeXcolorrgb 3012 4101 a SDict begin H.R end 3012 4101 a 3012 4151 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_af2e65ee8fafdd812f2782da2dfea285a) cvn H.B /ANN pdfmark end 3012 4151 a 0 TeXcolorgray 0 TeXcolorgray 0 TeXcolorgray 652 4259 a Fx(\225)p 0 TeXcolorgray 722 4259 a SDict begin H.S end 722 4259 a 0 TeXcolorgray 0 TeXcolorgray 722 4259 a SDict begin H.R end 722 4259 a 722 4259 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_a3be729bfbf66a839903e92cfa0301b21) cvn H.B /DEST pdfmark end 722 4259 a 0 TeXcolorgray 0 0 1 TeXcolorrgb 743 4277 a SDict begin H.S end 743 4277 a 0 0 1 TeXcolorrgb -18 x Fx(auto_array_ptr)p 0 0 1 TeXcolorrgb 1232 4212 a SDict begin H.R end 1232 4212 a 1232 4259 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_a3be729bfbf66a839903e92cfa0301b21) cvn H.B /ANN pdfmark end 1232 4259 a 0 TeXcolorgray 21 w Fx(\()p 0 0 1 TeXcolorrgb 1281 4277 a SDict begin H.S end 1281 4277 a 0 0 1 TeXcolorrgb -18 x Fx(auto_array_ptr)p 0 0 1 TeXcolorrgb 1769 4212 a SDict begin H.R end 1769 4212 a 1769 4259 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr) cvn H.B /ANN pdfmark end 1769 4259 a 0 TeXcolorgray Fu(<)g Fx(X)h Fu(>)f Fx(&right\))f(thro)n(w) g(\(\))p 0 TeXcolorgray 0 TeXcolorgray 840 4384 a Fl(copy)h (constructor)p 0 TeXcolorgray 0 TeXcolorgray 652 4492 a Fx(\225)p 0 TeXcolorgray 722 4492 a SDict begin H.S end 722 4492 a 0 TeXcolorgray 0 TeXcolorgray 722 4492 a SDict begin H.R end 722 4492 a 722 4492 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_a53dbf2f60ac2851b86b70dad5619b862) cvn H.B /DEST pdfmark end 722 4492 a 0 TeXcolorgray 0 0 1 TeXcolorrgb 743 4510 a SDict begin H.S end 743 4510 a 0 0 1 TeXcolorrgb -18 x Fp(\030)p Fx(auto_array_ptr)p 0 0 1 TeXcolorrgb 1296 4445 a SDict begin H.R end 1296 4445 a 1296 4492 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_a53dbf2f60ac2851b86b70dad5619b862) cvn H.B /ANN pdfmark end 1296 4492 a 0 TeXcolorgray 21 w Fx(\(\))p 0 TeXcolorgray 0 TeXcolorgray 840 4616 a Fl(destructor)-8 b(.)p 0 TeXcolorgray 0 TeXcolorgray 652 4724 a Fx(\225)p 0 TeXcolorgray 722 4724 a SDict begin H.S end 722 4724 a 0 TeXcolorgray 0 TeXcolorgray 722 4724 a SDict begin H.R end 722 4724 a 722 4724 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_a6cf9e51e5dd7a9d9d512900465c5ea1f) cvn H.B /DEST pdfmark end 722 4724 a 0 TeXcolorgray 21 w Fx(X)21 b Fp(\003)p 0 0 1 TeXcolorrgb 886 4742 a SDict begin H.S end 886 4742 a 0 0 1 TeXcolorrgb -18 x Fx(get)p 0 0 1 TeXcolorrgb 987 4677 a SDict begin H.R end 987 4677 a 987 4724 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_a6cf9e51e5dd7a9d9d512900465c5ea1f) cvn H.B /ANN pdfmark end 987 4724 a 0 TeXcolorgray 21 w Fx(\(\))f(const)p 0 TeXcolorgray 0 TeXcolorgray 840 4849 a Fl(r)m(eturn)g(a)f(tok)o(en)h(for)f(the)g(underlying)h (content)g(of)f Fc(\003)p Fl(this)p 0 TeXcolorgray 0 TeXcolorgray 652 4957 a Fx(\225)p 0 TeXcolorgray 722 4957 a SDict begin H.S end 722 4957 a 0 TeXcolorgray 0 TeXcolorgray 722 4957 a SDict begin H.R end 722 4957 a 722 4957 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_a46abc946300c6b7deaa7e456ba9f1aed) cvn H.B /DEST pdfmark end 722 4957 a 0 TeXcolorgray 21 w Fx(X)i(&)p 0 0 1 TeXcolorrgb 909 4975 a SDict begin H.S end 909 4975 a 0 0 1 TeXcolorrgb -18 x Fx(operator)p Fp(\003)p 0 0 1 TeXcolorrgb 1227 4910 a SDict begin H.R end 1227 4910 a 1227 4957 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_a46abc946300c6b7deaa7e456ba9f1aed) cvn H.B /ANN pdfmark end 1227 4957 a 0 TeXcolorgray 21 w Fx(\(\))f(thro)n(w)f(\(\))p 0 TeXcolorgray 515 5156 2865 4 v 515 5255 a Fw(Generated)c(on)g(T)-5 b(ue)14 b(Dec)g(6)g(2011)h(16:12:51)h(f)o(or)e(CC\002ts)h(by)g(Doxygen) p 0 TeXcolorgray eop end %%Page: 108 113 TeXDict begin 108 112 bop 0 TeXcolorgray 0 0 a SDict begin /product where{pop product(Distiller)search{pop pop pop version(.)search{exch pop exch pop(3011)eq{gsave newpath 0 0 moveto closepath clip/Courier findfont 10 scalefont setfont 72 72 moveto(.)show grestore}if}{pop}ifelse}{pop}ifelse}if end 0 0 a 0 TeXcolorgray 0 TeXcolorgray 515 232 a SDict begin H.S end 515 232 a 0 TeXcolorgray 0 TeXcolorgray 515 232 a SDict begin H.R end 515 232 a 515 232 a SDict begin [ /View [/XYZ H.V] /Dest (page.108) cvn H.B /DEST pdfmark end 515 232 a 0 TeXcolorgray -29 x Fy(24.22)81 b (CC\002ts::FITSUtil::auto_array_ptr)p Fu(<)14 b Fy(X)21 b Fu(>)f Fy(Class)h(T)-8 b(emplate)21 b(Refer)o(ence)100 b(108)p 515 236 2865 4 v 0 TeXcolorgray 0 TeXcolorgray 0 TeXcolorgray 840 523 a Fl(defer)m(ence)21 b(oper)o(ator)p 0 TeXcolorgray 0 TeXcolorgray 652 631 a Fx(\225)p 0 TeXcolorgray 722 631 a SDict begin H.S end 722 631 a 0 TeXcolorgray 0 TeXcolorgray 722 631 a SDict begin H.R end 722 631 a 722 631 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_a13ae387ac0d5d498974cc05d5ff878ae) cvn H.B /DEST pdfmark end 722 631 a 0 TeXcolorgray 21 w Fx(v)n(oid)p 0 0 1 TeXcolorrgb 910 649 a SDict begin H.S end 910 649 a 0 0 1 TeXcolorrgb -18 x Fx(operator=)p 0 0 1 TeXcolorrgb 1233 584 a SDict begin H.R end 1233 584 a 1233 631 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_a13ae387ac0d5d498974cc05d5ff878ae) cvn H.B /ANN pdfmark end 1233 631 a 0 TeXcolorgray 21 w Fx(\()p 0 0 1 TeXcolorrgb 1282 649 a SDict begin H.S end 1282 649 a 0 0 1 TeXcolorrgb -18 x Fx(auto_array_ptr)p 0 0 1 TeXcolorrgb 1770 584 a SDict begin H.R end 1770 584 a 1770 631 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr) cvn H.B /ANN pdfmark end 1770 631 a 0 TeXcolorgray Fu(<)g Fx(X)f Fu(>)h Fx(&right\))p 0 TeXcolorgray 0 TeXcolorgray 840 756 a Fl(assignment)f(oper)o(ator:)25 b(tr)o(ansfer)19 b(of)g(owner)o(ship)h(semantics)p 0 TeXcolorgray 0 TeXcolorgray 652 863 a Fx(\225)p 0 TeXcolorgray 722 863 a SDict begin H.S end 722 863 a 0 TeXcolorgray 0 TeXcolorgray 722 863 a SDict begin H.R end 722 863 a 722 863 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_a114a298f4d870f74ed1039c6ee41b2b5) cvn H.B /DEST pdfmark end 722 863 a 0 TeXcolorgray 21 w Fx(X)h(&)p 0 0 1 TeXcolorrgb 909 881 a SDict begin H.S end 909 881 a 0 0 1 TeXcolorrgb -18 x Fx(operator[)7 b(])p 0 0 1 TeXcolorrgb 1250 809 a SDict begin H.R end 1250 809 a 1250 863 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_a114a298f4d870f74ed1039c6ee41b2b5) cvn H.B /ANN pdfmark end 1250 863 a 0 TeXcolorgray 21 w Fx(\(size_t)20 b(i\))h(thro)n(w)e(\(\))p 0 TeXcolorgray 0 TeXcolorgray 840 988 a Fl(r)m(eturn)h(a)f(r)m(efer)m(ence)h(to)f(the)g(ith)g (element)g(of)g(the)g(arr)o(ay)p 0 TeXcolorgray 0 TeXcolorgray 652 1096 a Fx(\225)p 0 TeXcolorgray 722 1096 a SDict begin H.S end 722 1096 a 0 TeXcolorgray 0 TeXcolorgray 722 1096 a SDict begin H.R end 722 1096 a 722 1096 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_a71fed8548c3d114a231a3ea87f35e218) cvn H.B /DEST pdfmark end 722 1096 a 0 TeXcolorgray 21 w Fx(X)p 0 0 1 TeXcolorrgb 824 1114 a SDict begin H.S end 824 1114 a 0 0 1 TeXcolorrgb -18 x Fx(operator[)6 b(])p 0 0 1 TeXcolorrgb 1165 1042 a SDict begin H.R end 1165 1042 a 1165 1096 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_a71fed8548c3d114a231a3ea87f35e218) cvn H.B /ANN pdfmark end 1165 1096 a 0 TeXcolorgray 21 w Fx(\(size_t)20 b(i\))g(const)g(thro)n(w)g(\(\))p 0 TeXcolorgray 0 TeXcolorgray 840 1220 a Fl(r)m(eturn)g(a)f(copy)h(of)f (the)g(ith)f(element)h(of)g(the)g(arr)o(ay)p 0 TeXcolorgray 0 TeXcolorgray 652 1328 a Fx(\225)p 0 TeXcolorgray 722 1328 a SDict begin H.S end 722 1328 a 0 TeXcolorgray 0 TeXcolorgray 722 1328 a SDict begin H.R end 722 1328 a 722 1328 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_a994e12743b5b7d75b4168ac095a60c1f) cvn H.B /DEST pdfmark end 722 1328 a 0 TeXcolorgray 21 w Fx(X)i Fp(\003)p 0 0 1 TeXcolorrgb 886 1329 a SDict begin H.S end 886 1329 a 0 0 1 TeXcolorrgb -1 x Fx(release)p 0 0 1 TeXcolorrgb 1116 1272 a SDict begin H.R end 1116 1272 a 1116 1328 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_a994e12743b5b7d75b4168ac095a60c1f) cvn H.B /ANN pdfmark end 1116 1328 a 0 TeXcolorgray 21 w Fx(\(\))f(thro)n(w)g(\(\))p 0 TeXcolorgray 0 TeXcolorgray 840 1453 a Fl(r)m(eturn)g(underlying)h(content)e(of)g Fc(\003)p Fl(this,)g(tr)o(ansferring)g(memory)h(owner)o(ship)p 0 TeXcolorgray 0 TeXcolorgray 652 1561 a Fx(\225)p 0 TeXcolorgray 722 1561 a SDict begin H.S end 722 1561 a 0 TeXcolorgray 0 TeXcolorgray 722 1561 a SDict begin H.R end 722 1561 a 722 1561 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_af2e65ee8fafdd812f2782da2dfea285a) cvn H.B /DEST pdfmark end 722 1561 a 0 TeXcolorgray 21 w Fx(X)h Fp(\003)p 0 0 1 TeXcolorrgb 886 1562 a SDict begin H.S end 886 1562 a 0 0 1 TeXcolorrgb -1 x Fx(reset)p 0 0 1 TeXcolorrgb 1043 1514 a SDict begin H.R end 1043 1514 a 1043 1561 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_af2e65ee8fafdd812f2782da2dfea285a) cvn H.B /ANN pdfmark end 1043 1561 a 0 TeXcolorgray 21 w Fx(\(X)f Fp(\003)p Fx(p\))f(thro)n(w)h(\(\))p 0 TeXcolorgray 0 TeXcolorgray 840 1685 a Fl(c)o(hang)o(e)h(the)e(content) h(of)e(the)p 0 0 1 TeXcolorrgb 1608 1701 a SDict begin H.S end 1608 1701 a 0 0 1 TeXcolorrgb -16 x Fl(auto_arr)o(ay_ptr)p 0 0 1 TeXcolorrgb 2068 1645 a SDict begin H.R end 2068 1645 a 2068 1685 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr) cvn H.B /ANN pdfmark end 2068 1685 a 0 TeXcolorgray 19 w Fl(to)h(p)p 0.25 TeXcolorgray 515 1954 a Fo(Static)f(Pub)o(lic)g(Member)g(Functions)p 0 TeXcolorgray 515 2011 a SDict begin H.S end 515 2011 a 515 2011 a SDict begin 12 H.A end 515 2011 a 515 2011 a SDict begin [ /View [/XYZ H.V] /Dest (section*.36) cvn H.B /DEST pdfmark end 515 2011 a 0 TeXcolorgray 0 TeXcolorgray 652 2143 a Fx(\225)p 0 TeXcolorgray 722 2143 a SDict begin H.S end 722 2143 a 0 TeXcolorgray 0 TeXcolorgray 722 2143 a SDict begin H.R end 722 2143 a 722 2143 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_a13ca62c9f81dbc710968b2afae2d18a7) cvn H.B /DEST pdfmark end 722 2143 a 0 TeXcolorgray 21 w Fx(static)j(v)n(oid)p 0 0 1 TeXcolorrgb 1106 2144 a SDict begin H.S end 1106 2144 a 0 0 1 TeXcolorrgb -1 x Fx(remo)o(v)o(e)p 0 0 1 TeXcolorrgb 1352 2104 a SDict begin H.R end 1352 2104 a 1352 2143 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITSUtil_1_1auto__array__ptr_a13ca62c9f81dbc710968b2afae2d18a7) cvn H.B /ANN pdfmark end 1352 2143 a 0 TeXcolorgray 21 w Fx(\(X)f Fp(\003)p Fx(&x\))p 0 TeXcolorgray 0 TeXcolorgray 840 2267 a Fl(utility)e(function)i(to)f(delete)g(the)g(memory)g(owned)h (by)f(x)g(and)h(set)f(it)f(to)h(null.)515 2404 y SDict begin H.S end 515 2404 a 515 2404 a SDict begin 12 H.A end 515 2404 a 515 2404 a SDict begin [ /View [/XYZ H.V] /Dest (subsubsection.24.22.1) cvn H.B /DEST pdfmark end 515 2404 a 0.25 TeXcolorgray 131 x Fo(24.22.1)75 b(Detailed)18 b(Description)p 0 TeXcolorgray 0.25 TeXcolorgray 515 2738 a(template)p Fu(<)p Fo(typename)i(X)p Fu(>)p Fo(c)o(lass)d(CC\002ts::FITSUtil::auto) p 2030 2738 23 4 v 33 w(arra)o(y)p 2212 2738 V 26 w(ptr)p Fu(<)g Fo(X)g Fu(>)p 0 TeXcolorgray 515 2810 a SDict begin H.S end 515 2810 a 515 2810 a SDict begin 12 H.A end 515 2810 a 515 2810 a SDict begin [ /View [/XYZ H.V] /Dest (section*.37) cvn H.B /DEST pdfmark end 515 2810 a 131 x Fx(A)j(class)i (that)e(mimics)g(the)g(std::)26 b(library)19 b(auto_ptr)g(class,)i(b)n (ut)f(w)o(orks)g(with)g(arrays.)515 3088 y(This)30 b(code)g(w)o(as)h (written)f(by)f(Jack)i(Ree)n(v)o(es)f(and)f(\002rst)i(appeared)e(C++)i (Report,)h(March)d(1996)515 3188 y(edition.)53 b(Although)28 b(some)i(authors)e(think)h(one)h(shouldn')o(t)d(need)i(such)h(a)g (contri)n(v)n(ance,)g(there)515 3287 y(seems)20 b(to)h(be)f(a)g(need)g (for)g(it)g(when)g(wrapping)e(C)j(code.)515 3434 y(Usage:)k(replace)515 3581 y(\003oat)p Fp(\003)20 b Ft(f)33 b Fx(=)20 b(ne)n(w)g(\003oat[)o (200])o(;)515 3728 y(with)515 3875 y(FITSUtil::auto_array_ptr)p Fu(<)p Fx(\003oat)p Fu(>)15 b Ft(f\(ne)o(w)20 b(\003oat[)o(200])o(\))p Fx(;)515 4022 y(Then)h(the)h(memory)e(will)j(be)f(managed)f(correctly)f (in)j(the)f(presence)f(of)h(e)o(xceptions,)e(and)i(delete)515 4121 y(will)f(be)f(called)g(automatically)f(for)g Ft(f)33 b Fx(when)20 b(lea)n(ving)f(scope.)515 4268 y(The)h(documentation)d (for)i(this)i(class)g(w)o(as)g(generated)e(from)g(the)h(follo)n(wing)f (\002le:)p 0 TeXcolorgray 652 4481 a(\225)p 0 TeXcolorgray 41 w(FITSUtil.h)p 0 TeXcolorgray 515 4695 a SDict begin H.S end 515 4695 a 0 TeXcolorgray 0 TeXcolorgray 515 4695 a SDict begin H.R end 515 4695 a 515 4695 a SDict begin [ /View [/XYZ H.V] /Dest (structCCfits_1_1FITSUtil_1_1CAarray) cvn H.B /DEST pdfmark end 515 4695 a 0 TeXcolorgray 0 TeXcolorgray 515 5156 2865 4 v 560 x Fw(Generated)c(on)g(T)-5 b(ue)14 b(Dec)g(6)g(2011)h(16:12:51)h(f)o(or)e(CC\002ts)h(by)g(Doxygen)p 0 TeXcolorgray eop end %%Page: 109 114 TeXDict begin 109 113 bop 0 TeXcolorgray 0 0 a SDict begin /product where{pop product(Distiller)search{pop pop pop version(.)search{exch pop exch pop(3011)eq{gsave newpath 0 0 moveto closepath clip/Courier findfont 10 scalefont setfont 72 72 moveto(.)show grestore}if}{pop}ifelse}{pop}ifelse}if end 0 0 a 0 TeXcolorgray 0 TeXcolorgray 515 232 a SDict begin H.S end 515 232 a 0 TeXcolorgray 0 TeXcolorgray 515 232 a SDict begin H.R end 515 232 a 515 232 a SDict begin [ /View [/XYZ H.V] /Dest (page.109) cvn H.B /DEST pdfmark end 515 232 a 0 TeXcolorgray -29 x Fy(24.23)81 b(CC\002ts::FITSUtil::CAarray)p Fu(<)17 b Fy(T)k Fu(>)f Fy(Class)h(T)-8 b(emplate)21 b(Refer)o(ence)335 b(109)p 515 236 2865 4 v 0 TeXcolorgray 515 440 a SDict begin H.S end 515 440 a 515 440 a SDict begin 12 H.A end 515 440 a 515 440 a SDict begin [ /View [/XYZ H.V] /Dest (subsection.24.23) cvn H.B /DEST pdfmark end 515 440 a 0.25 TeXcolorgray 83 x Fq(24.23)89 b(CC\002ts::FITSUtil::CAarra)o (y)p Fa(<)24 b Fq(T)c Fa(>)h Fq(Class)g(T)l(emplate)g(Ref)o(erence)p 0 TeXcolorgray 515 726 a Fx(function)d(object)i(returning)e(C)j(array)e (from)h(a)g(v)n(alarray)-5 b(.)23 b(see)p 0 0 1 TeXcolorrgb 2306 744 a SDict begin H.S end 2306 744 a 0 0 1 TeXcolorrgb -18 x Fx(CV)-9 b(array)p 0 0 1 TeXcolorrgb 2583 670 a SDict begin H.R end 2583 670 a 2583 726 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (structCCfits_1_1FITSUtil_1_1CVarray) cvn H.B /ANN pdfmark end 2583 726 a 0 TeXcolorgray 20 w Fx(for)20 b(details)515 873 y Fr(#include)48 b Fu(<)p Fr(FITSUtil.h)p Fu(>)p 0.25 TeXcolorgray 515 1135 a Fo(Pub)o(lic)18 b(Member)g(Functions)p 0 TeXcolorgray 515 1192 a SDict begin H.S end 515 1192 a 515 1192 a SDict begin 12 H.A end 515 1192 a 515 1192 a SDict begin [ /View [/XYZ H.V] /Dest (section*.38) cvn H.B /DEST pdfmark end 515 1192 a 0 TeXcolorgray 0 TeXcolorgray 652 1318 a Fx(\225)p 0 TeXcolorgray 722 1318 a SDict begin H.S end 722 1318 a 0 TeXcolorgray 0 TeXcolorgray 722 1318 a SDict begin H.R end 722 1318 a 722 1318 a SDict begin [ /View [/XYZ H.V] /Dest (structCCfits_1_1FITSUtil_1_1CAarray_a696f1168e9058a218e91ea0ead06693f) cvn H.B /DEST pdfmark end 722 1318 a 0 TeXcolorgray 21 w Fx(T)j Fp(\003)p 0 0 1 TeXcolorrgb 877 1336 a SDict begin H.S end 877 1336 a 0 0 1 TeXcolorrgb -18 x Fx(operator\(\))p 0 0 1 TeXcolorrgb 1209 1261 a SDict begin H.R end 1209 1261 a 1209 1318 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (structCCfits_1_1FITSUtil_1_1CAarray_a696f1168e9058a218e91ea0ead06693f) cvn H.B /ANN pdfmark end 1209 1318 a 0 TeXcolorgray 20 w Fx(\(const)f(std::v)n(alarray)p Fu(<)e Fx(T)j Fu(>)f Fx(&inArray\))p 0 TeXcolorgray 0 TeXcolorgray 840 1436 a Fl(oper)o(ator)g(r)m(eturning)h(C)d(arr)o(ay)i(for)f(use)g(with)f (ima)o(g)o(e)i(data.)515 1566 y SDict begin H.S end 515 1566 a 515 1566 a SDict begin 12 H.A end 515 1566 a 515 1566 a SDict begin [ /View [/XYZ H.V] /Dest (subsubsection.24.23.1) cvn H.B /DEST pdfmark end 515 1566 a 0.25 TeXcolorgray 132 x Fo(24.23.1)75 b(Detailed)18 b(Description)p 0 TeXcolorgray 0.25 TeXcolorgray 515 1901 a(template)p Fu(<)p Fo(typename)i(T)p Fu(>)p Fo(c)o(lass)d(CC\002ts::FITSUtil::CAarra)o(y)p Fu(<)22 b Fo(T)17 b Fu(>)p 0 TeXcolorgray 515 1973 a SDict begin H.S end 515 1973 a 515 1973 a SDict begin 12 H.A end 515 1973 a 515 1973 a SDict begin [ /View [/XYZ H.V] /Dest (section*.39) cvn H.B /DEST pdfmark end 515 1973 a 131 x Fx(function)h(object)i(returning)e(C)j(array)e(from)h(a)g(v)n (alarray)-5 b(.)23 b(see)p 0 0 1 TeXcolorrgb 2306 2122 a SDict begin H.S end 2306 2122 a 0 0 1 TeXcolorrgb -18 x Fx(CV)-9 b(array)p 0 0 1 TeXcolorrgb 2583 2048 a SDict begin H.R end 2583 2048 a 2583 2104 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (structCCfits_1_1FITSUtil_1_1CVarray) cvn H.B /ANN pdfmark end 2583 2104 a 0 TeXcolorgray 20 w Fx(for)20 b(details)515 2251 y(The)g(documentation)d(for)i(this)i(class)g(w)o(as)g(generated)e (from)g(the)h(follo)n(wing)f(\002le:)p 0 TeXcolorgray 652 2438 a(\225)p 0 TeXcolorgray 41 w(FITSUtil.h)p 0 TeXcolorgray 515 2625 a SDict begin H.S end 515 2625 a 0 TeXcolorgray 0 TeXcolorgray 515 2625 a SDict begin H.R end 515 2625 a 515 2625 a SDict begin [ /View [/XYZ H.V] /Dest (structCCfits_1_1FITSUtil_1_1CVAarray) cvn H.B /DEST pdfmark end 515 2625 a 0 TeXcolorgray 515 2741 a SDict begin H.S end 515 2741 a 515 2741 a SDict begin 12 H.A end 515 2741 a 515 2741 a SDict begin [ /View [/XYZ H.V] /Dest (subsection.24.24) cvn H.B /DEST pdfmark end 515 2741 a 0.25 TeXcolorgray 163 x Fq(24.24)89 b (CC\002ts::FITSUtil::CVAarra)o(y)p Fa(<)24 b Fq(T)c Fa(>)h Fq(Class)g(T)l(emplate)g(Ref)o(erence)p 0 TeXcolorgray 515 3107 a Fx(function)d(object)i(returning)e(C)j(array)e(from)h(a)g(v) o(ector)f(of)h(v)n(alarrays.)k(see)p 0 0 1 TeXcolorrgb 2661 3125 a SDict begin H.S end 2661 3125 a 0 0 1 TeXcolorrgb -18 x Fx(CV)-9 b(array)p 0 0 1 TeXcolorrgb 2937 3051 a SDict begin H.R end 2937 3051 a 2937 3107 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (structCCfits_1_1FITSUtil_1_1CVarray) cvn H.B /ANN pdfmark end 2937 3107 a 0 TeXcolorgray 21 w Fx(for)19 b(details)515 3254 y Fr(#include)48 b Fu(<)p Fr(FITSUtil.h)p Fu(>)p 0.25 TeXcolorgray 515 3516 a Fo(Pub)o(lic)18 b(Member)g(Functions)p 0 TeXcolorgray 515 3573 a SDict begin H.S end 515 3573 a 515 3573 a SDict begin 12 H.A end 515 3573 a 515 3573 a SDict begin [ /View [/XYZ H.V] /Dest (section*.40) cvn H.B /DEST pdfmark end 515 3573 a 0 TeXcolorgray 0 TeXcolorgray 652 3699 a Fx(\225)p 0 TeXcolorgray 722 3699 a SDict begin H.S end 722 3699 a 0 TeXcolorgray 0 TeXcolorgray 722 3699 a SDict begin H.R end 722 3699 a 722 3699 a SDict begin [ /View [/XYZ H.V] /Dest (structCCfits_1_1FITSUtil_1_1CVAarray_a817543d5a8700ca336a35e62a3223d12) cvn H.B /DEST pdfmark end 722 3699 a 0 TeXcolorgray 21 w Fx(T)j Fp(\003)p 0 0 1 TeXcolorrgb 877 3717 a SDict begin H.S end 877 3717 a 0 0 1 TeXcolorrgb -18 x Fx(operator\(\))p 0 0 1 TeXcolorrgb 1209 3642 a SDict begin H.R end 1209 3642 a 1209 3699 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (structCCfits_1_1FITSUtil_1_1CVAarray_a817543d5a8700ca336a35e62a3223d12) cvn H.B /ANN pdfmark end 1209 3699 a 0 TeXcolorgray 20 w Fx(\(const)f(std::v)o(ector)p Fu(<)f Fx(std::v)n(alarray)p Fu(<)f Fx(T)i Fu(>)h(>)f Fx(&inArray\))p 0 TeXcolorgray 0 TeXcolorgray 840 3817 a Fl(oper)o(ator)g(r)m(eturning)h(C)d(arr)o(ay) i(for)f(use)g(with)f(vector)i(column)f(data.)515 3948 y SDict begin H.S end 515 3948 a 515 3948 a SDict begin 12 H.A end 515 3948 a 515 3948 a SDict begin [ /View [/XYZ H.V] /Dest (subsubsection.24.24.1) cvn H.B /DEST pdfmark end 515 3948 a 0.25 TeXcolorgray 131 x Fo(24.24.1)75 b(Detailed)18 b(Description)p 0 TeXcolorgray 0.25 TeXcolorgray 515 4282 a(template)p Fu(<)p Fo(typename)i(T)p Fu(>)p Fo(c)o(lass)d (CC\002ts::FITSUtil::CVAarra)o(y)p Fu(<)22 b Fo(T)17 b Fu(>)p 0 TeXcolorgray 515 4354 a SDict begin H.S end 515 4354 a 515 4354 a SDict begin 12 H.A end 515 4354 a 515 4354 a SDict begin [ /View [/XYZ H.V] /Dest (section*.41) cvn H.B /DEST pdfmark end 515 4354 a 131 x Fx(function)h(object)i (returning)e(C)j(array)e(from)h(a)g(v)o(ector)f(of)h(v)n(alarrays.)k (see)p 0 0 1 TeXcolorrgb 2661 4503 a SDict begin H.S end 2661 4503 a 0 0 1 TeXcolorrgb -18 x Fx(CV)-9 b(array)p 0 0 1 TeXcolorrgb 2937 4429 a SDict begin H.R end 2937 4429 a 2937 4485 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (structCCfits_1_1FITSUtil_1_1CVarray) cvn H.B /ANN pdfmark end 2937 4485 a 0 TeXcolorgray 21 w Fx(for)19 b(details)515 4632 y(The)h(documentation)d(for)i(this)i (class)g(w)o(as)g(generated)e(from)g(the)h(follo)n(wing)f(\002le:)p 0 TeXcolorgray 652 4819 a(\225)p 0 TeXcolorgray 41 w(FITSUtil.h)p 0 TeXcolorgray 515 5006 a SDict begin H.S end 515 5006 a 0 TeXcolorgray 0 TeXcolorgray 515 5006 a SDict begin H.R end 515 5006 a 515 5006 a SDict begin [ /View [/XYZ H.V] /Dest (structCCfits_1_1FITSUtil_1_1CVarray) cvn H.B /DEST pdfmark end 515 5006 a 0 TeXcolorgray 0 TeXcolorgray 515 5156 2865 4 v 249 x Fw(Generated)c(on)g(T)-5 b(ue)14 b(Dec)g(6)g(2011)h(16:12:51)h(f)o (or)e(CC\002ts)h(by)g(Doxygen)p 0 TeXcolorgray eop end %%Page: 110 115 TeXDict begin 110 114 bop 0 TeXcolorgray 0 0 a SDict begin /product where{pop product(Distiller)search{pop pop pop version(.)search{exch pop exch pop(3011)eq{gsave newpath 0 0 moveto closepath clip/Courier findfont 10 scalefont setfont 72 72 moveto(.)show grestore}if}{pop}ifelse}{pop}ifelse}if end 0 0 a 0 TeXcolorgray 0 TeXcolorgray 515 232 a SDict begin H.S end 515 232 a 0 TeXcolorgray 0 TeXcolorgray 515 232 a SDict begin H.R end 515 232 a 515 232 a SDict begin [ /View [/XYZ H.V] /Dest (page.110) cvn H.B /DEST pdfmark end 515 232 a 0 TeXcolorgray -29 x Fy(24.25)81 b(CC\002ts::FITSUtil::CV)-8 b(array)p Fu(<)17 b Fy(T)k Fu(>)g Fy(Class)f(T)-8 b(emplate)21 b(Refer)o(ence)343 b(110)p 515 236 2865 4 v 0 TeXcolorgray 515 440 a SDict begin H.S end 515 440 a 515 440 a SDict begin 12 H.A end 515 440 a 515 440 a SDict begin [ /View [/XYZ H.V] /Dest (subsection.24.25) cvn H.B /DEST pdfmark end 515 440 a 0.25 TeXcolorgray 83 x Fq(24.25)89 b(CC\002ts::FITSUtil::CV)l (arra)o(y)p Fa(<)24 b Fq(T)c Fa(>)h Fq(Class)g(T)l(emplate)f(Ref)o (erence)p 0 TeXcolorgray 515 726 a Fx(Function)j(object)h(class)i(for)e (returning)f(C)i(arrays)f(from)g(standard)f(library)h(objects)g(used)h (in)g(the)p 0 0 1 TeXcolorrgb 515 827 a SDict begin H.S end 515 827 a 0 0 1 TeXcolorrgb -1 x Fx(FITS)p 0 0 1 TeXcolorrgb 685 769 a SDict begin H.R end 685 769 a 685 826 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITS) cvn H.B /ANN pdfmark end 685 826 a 0 TeXcolorgray 21 w Fx(library)19 b(implementation.)515 972 y Fr(#include)48 b Fu(<)p Fr(FITSUtil.h)p Fu(>)p 0.25 TeXcolorgray 515 1241 a Fo(Pub)o(lic)18 b(Member)g (Functions)p 0 TeXcolorgray 515 1298 a SDict begin H.S end 515 1298 a 515 1298 a SDict begin 12 H.A end 515 1298 a 515 1298 a SDict begin [ /View [/XYZ H.V] /Dest (section*.42) cvn H.B /DEST pdfmark end 515 1298 a 0 TeXcolorgray 0 TeXcolorgray 652 1430 a Fx(\225)p 0 TeXcolorgray 722 1430 a SDict begin H.S end 722 1430 a 0 TeXcolorgray 0 TeXcolorgray 722 1430 a SDict begin H.R end 722 1430 a 722 1430 a SDict begin [ /View [/XYZ H.V] /Dest (structCCfits_1_1FITSUtil_1_1CVarray_a661c853b542621505841646ffb4f9b60) cvn H.B /DEST pdfmark end 722 1430 a 0 TeXcolorgray 21 w Fx(T)j Fp(\003)p 0 0 1 TeXcolorrgb 877 1448 a SDict begin H.S end 877 1448 a 0 0 1 TeXcolorrgb -18 x Fx(operator\(\))p 0 0 1 TeXcolorrgb 1209 1373 a SDict begin H.R end 1209 1373 a 1209 1430 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (structCCfits_1_1FITSUtil_1_1CVarray_a661c853b542621505841646ffb4f9b60) cvn H.B /ANN pdfmark end 1209 1430 a 0 TeXcolorgray 20 w 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[0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn H.B /ANN pdfmark end 1214 2588 a 0 TeXcolorgray 19 w Fl(number)p 0 TeXcolorgray 0 TeXcolorgray 652 2695 a Fx(\225)p 0 TeXcolorgray 722 2695 a SDict begin H.S end 722 2695 a 0 TeXcolorgray 0 TeXcolorgray 722 2695 a SDict begin H.R end 722 2695 a 722 2695 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1HDU_a111434a1e35e2453237f86b30b3f4a8d) cvn H.B /DEST pdfmark end 722 2695 a 0 TeXcolorgray 21 w Fx(int)p 0 0 1 TeXcolorrgb 851 2696 a SDict begin H.S end 851 2696 a 0 0 1 TeXcolorrgb -1 x Fx(inde)o(x)p 0 0 1 TeXcolorrgb 1035 2639 a SDict begin H.R end 1035 2639 a 1035 2695 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU_a111434a1e35e2453237f86b30b3f4a8d) cvn H.B /ANN pdfmark end 1035 2695 a 0 TeXcolorgray 20 w Fx(\(\))i(const)p 0 TeXcolorgray 0 TeXcolorgray 840 2819 a Fl(r)m(eturn)f(the)p 0 0 1 TeXcolorrgb 1153 2820 a SDict begin H.S end 1153 2820 a 0 0 1 TeXcolorrgb -1 x Fl(HDU)p 0 0 1 TeXcolorrgb 1315 2771 a SDict begin H.R end 1315 2771 a 1315 2819 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn H.B /ANN pdfmark end 1315 2819 a 0 TeXcolorgray 19 w Fl(number)p 0 TeXcolorgray 0 TeXcolorgray 652 2926 a Fx(\225)p 0 TeXcolorgray 722 2926 a SDict begin H.S end 722 2926 a 0 TeXcolorgray 0 TeXcolorgray 722 2926 a SDict begin H.R end 722 2926 a 722 2926 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1HDU_a011149805ffb96031218739369863e17) cvn H.B /DEST pdfmark end 722 2926 a 0 TeXcolorgray 21 w Fx(std::map)p Fu(<)f Fx(String,)p 0 0 1 TeXcolorrgb 1359 2944 a SDict begin H.S end 1359 2944 a 0 0 1 TeXcolorrgb -18 x Fx(K)n(e)o(yw)o(ord)p 0 0 1 TeXcolorrgb 1664 2870 a SDict begin H.R end 1664 2870 a 1664 2926 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Keyword) cvn H.B /ANN pdfmark end 1664 2926 a 0 TeXcolorgray 20 w Fp(\003)i Fu(>)f Fx(&)p 0 0 1 TeXcolorrgb 1917 2944 a SDict begin H.S end 1917 2944 a 0 0 1 TeXcolorrgb -18 x Fx(k)o(e)o(yW)-7 b(ord)p 0 0 1 TeXcolorrgb 2217 2870 a SDict begin H.R end 2217 2870 a 2217 2926 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU_a011149805ffb96031218739369863e17) cvn H.B /ANN pdfmark end 2217 2926 a 0 TeXcolorgray 21 w Fx(\(\))p 0 TeXcolorgray 0 TeXcolorgray 840 3050 a Fl(r)m(eturn)20 b(the)f(associative)h(arr)o(ay)f(containing)i(the)p 0 0 1 TeXcolorrgb 2136 3051 a SDict begin H.S end 2136 3051 a 0 0 1 TeXcolorrgb -1 x Fl(HDU)p 0 0 1 TeXcolorrgb 2298 3002 a SDict begin H.R end 2298 3002 a 2298 3050 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn H.B /ANN pdfmark end 2298 3050 a 0 TeXcolorgray 18 w Fl(k)o(e)n(ywor)m(ds)f (so)f(far)g(r)m(ead.)p 0 TeXcolorgray 0 TeXcolorgray 652 3157 a Fx(\225)p 0 TeXcolorgray 722 3157 a SDict begin H.S end 722 3157 a 0 TeXcolorgray 0 TeXcolorgray 722 3157 a SDict begin H.R end 722 3157 a 722 3157 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1HDU_abb274465a32c564e884b69810161078c) cvn H.B /DEST pdfmark end 722 3157 a 0 TeXcolorgray 0 0 1 TeXcolorrgb 743 3175 a SDict begin H.S end 743 3175 a 0 0 1 TeXcolorrgb -18 x Fx(K)n(e)o(yw)o(ord)p 0 0 1 TeXcolorrgb 1048 3101 a SDict begin H.R end 1048 3101 a 1048 3157 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Keyword) cvn H.B /ANN pdfmark end 1048 3157 a 0 TeXcolorgray 21 w Fx(&)p 0 0 1 TeXcolorrgb 1154 3175 a SDict begin H.S end 1154 3175 a 0 0 1 TeXcolorrgb -18 x Fx(k)o(e)o(yW)-7 b(ord)p 0 0 1 TeXcolorrgb 1454 3101 a SDict begin H.R end 1454 3101 a 1454 3157 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU_abb274465a32c564e884b69810161078c) cvn H.B /ANN pdfmark end 1454 3157 a 0 TeXcolorgray 21 w Fx(\(const)20 b(String)f(&k)o(e)o(yName\))p 0 TeXcolorgray 0 TeXcolorgray 840 3281 a Fl(r)m(eturn)h(a)f(\(pr)m(e)o(viously)h(r)m(ead\))g(k)o(e)n (ywor)m(d)g(fr)m(om)e(the)p 0 0 1 TeXcolorrgb 2160 3282 a SDict begin H.S end 2160 3282 a 0 0 1 TeXcolorrgb -1 x Fl(HDU)p 0 0 1 TeXcolorrgb 2322 3233 a SDict begin H.R end 2322 3233 a 2322 3281 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn H.B /ANN pdfmark end 2322 3281 a 0 TeXcolorgray 19 w Fl(object.)p 0 TeXcolorgray 0 TeXcolorgray 652 3389 a Fx(\225)p 0 TeXcolorgray 722 3389 a SDict begin H.S end 722 3389 a 0 TeXcolorgray 0 TeXcolorgray 722 3389 a SDict begin H.R end 722 3389 a 722 3389 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1HDU_a674875a76c3fb745b2b35303b42407cc) cvn H.B /DEST pdfmark end 722 3389 a 0 TeXcolorgray 21 w Fx(const)i(std::map)p Fu(<)f Fx(string,)p 0 0 1 TeXcolorrgb 1562 3407 a SDict begin H.S end 1562 3407 a 0 0 1 TeXcolorrgb -18 x Fx(K)n(e)o(yw)o(ord)p 0 0 1 TeXcolorrgb 1866 3332 a SDict begin H.R end 1866 3332 a 1866 3389 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Keyword) cvn H.B /ANN pdfmark end 1866 3389 a 0 TeXcolorgray 21 w Fp(\003)i Fu(>)f Fx(&)p 0 0 1 TeXcolorrgb 2120 3407 a SDict begin H.S end 2120 3407 a 0 0 1 TeXcolorrgb -18 x Fx(k)o(e)o(yW)-7 b(ord)p 0 0 1 TeXcolorrgb 2420 3332 a SDict begin H.R end 2420 3332 a 2420 3389 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU_a674875a76c3fb745b2b35303b42407cc) cvn H.B /ANN pdfmark end 2420 3389 a 0 TeXcolorgray 21 w Fx(\(\))20 b(const)p 0 TeXcolorgray 0 TeXcolorgray 840 3513 a Fl(r)m(eturn)27 b(the)e(associative)i(arr)o(ay)f(containing)h(the)p 0 0 1 TeXcolorrgb 2175 3514 a SDict begin H.S end 2175 3514 a 0 0 1 TeXcolorrgb -1 x Fl(HDU)p 0 0 1 TeXcolorrgb 2337 3464 a SDict begin H.R end 2337 3464 a 2337 3513 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn H.B /ANN pdfmark end 2337 3513 a 0 TeXcolorgray 25 w Fl(K)m(e)n(ywor)m(ds)g (that)e(have)i(been)f(r)m(ead)h(so)840 3604 y(far)-8 b(.)p 0 TeXcolorgray 0 TeXcolorgray 652 3711 a Fx(\225)p 0 TeXcolorgray 722 3711 a SDict begin H.S end 722 3711 a 0 TeXcolorgray 0 TeXcolorgray 722 3711 a SDict begin H.R end 722 3711 a 722 3711 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1HDU_abd3add56e93046c3a5260f1d227b4892) cvn H.B /DEST pdfmark end 722 3711 a 0 TeXcolorgray 21 w Fx(const)p 0 0 1 TeXcolorrgb 939 3729 a SDict begin H.S end 939 3729 a 0 0 1 TeXcolorrgb -18 x Fx(K)n(e)o(yw)o(ord)p 0 0 1 TeXcolorrgb 1244 3655 a SDict begin H.R end 1244 3655 a 1244 3711 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Keyword) cvn H.B /ANN pdfmark end 1244 3711 a 0 TeXcolorgray 21 w Fx(&)p 0 0 1 TeXcolorrgb 1350 3729 a SDict begin H.S end 1350 3729 a 0 0 1 TeXcolorrgb -18 x Fx(k)o(e)o(yW)h(ord)p 0 0 1 TeXcolorrgb 1650 3655 a SDict begin H.R end 1650 3655 a 1650 3711 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU_abd3add56e93046c3a5260f1d227b4892) cvn H.B /ANN pdfmark end 1650 3711 a 0 TeXcolorgray 21 w Fx(\(const)20 b(string)f(&k)o(e)o (yname\))f(const)p 0 TeXcolorgray 0 TeXcolorgray 840 3835 a Fl(r)m(eturn)i(a)f(\(pr)m(e)o(viously)h(r)m(ead\))g(k)o(e)n (ywor)m(d)g(fr)m(om)e(the)p 0 0 1 TeXcolorrgb 2160 3836 a SDict begin H.S end 2160 3836 a 0 0 1 TeXcolorrgb -1 x Fl(HDU)p 0 0 1 TeXcolorrgb 2322 3787 a SDict begin H.R end 2322 3787 a 2322 3835 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn H.B /ANN pdfmark end 2322 3835 a 0 TeXcolorgray 19 w Fl(object.)23 b(const)d(ver)o(sion)p 0 TeXcolorgray 652 3942 a Fx(\225)p 0 TeXcolorgray 41 w(virtual)g(v)n(oid)p 0 0 1 TeXcolorrgb 1127 3943 a SDict begin H.S end 1127 3943 a 0 0 1 TeXcolorrgb -1 x Fx(mak)o(eThisCurrent)p 0 0 1 TeXcolorrgb 1707 3886 a SDict begin H.R end 1707 3886 a 1707 3942 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU_af0bbec3fe5f6b41ff4a95feff6600d57) cvn H.B /ANN pdfmark end 1707 3942 a 0 TeXcolorgray 21 w Fx(\(\))g(const)p 0 TeXcolorgray 0 TeXcolorgray 840 4066 a Fl(mo)o(ve)g(the)f(\002ts\002le)g(pointer)h(to)f(this)f (curr)m(ent)p 0 0 1 TeXcolorrgb 1997 4067 a SDict begin H.S end 1997 4067 a 0 0 1 TeXcolorrgb -1 x Fl(HDU)p 0 0 1 TeXcolorrgb 2159 4018 a SDict begin H.R end 2159 4018 a 2159 4066 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn H.B /ANN pdfmark end 2159 4066 a 0 TeXcolorgray Fl(.)p 0 TeXcolorgray 0 TeXcolorgray 652 4173 a Fx(\225)p 0 TeXcolorgray 722 4173 a SDict begin H.S end 722 4173 a 0 TeXcolorgray 0 TeXcolorgray 722 4173 a SDict begin H.R end 722 4173 a 722 4173 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1HDU_a0c4fa124e27d002de1044c1832be5942) cvn H.B /DEST pdfmark end 722 4173 a 0 TeXcolorgray 21 w Fx(bool)p 0 0 1 TeXcolorrgb 911 4191 a SDict begin H.S end 911 4191 a 0 0 1 TeXcolorrgb -18 x Fx(operator!=)p 0 0 1 TeXcolorrgb 1263 4117 a SDict begin H.R end 1263 4117 a 1263 4173 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU_a0c4fa124e27d002de1044c1832be5942) cvn H.B /ANN pdfmark end 1263 4173 a 0 TeXcolorgray 20 w Fx(\(const)p 0 0 1 TeXcolorrgb 1507 4174 a SDict begin H.S end 1507 4174 a 0 0 1 TeXcolorrgb -1 x Fx(HDU)p 0 0 1 TeXcolorrgb 1687 4119 a SDict begin H.R end 1687 4119 a 1687 4173 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn H.B /ANN pdfmark end 1687 4173 a 0 TeXcolorgray 21 w Fx(&right\))g(const)p 0 TeXcolorgray 0 TeXcolorgray 840 4297 a Fl(inequality)i(oper)o(ator)p 0 TeXcolorgray 0 TeXcolorgray 652 4405 a Fx(\225)p 0 TeXcolorgray 722 4405 a SDict begin H.S end 722 4405 a 0 TeXcolorgray 0 TeXcolorgray 722 4405 a SDict begin H.R end 722 4405 a 722 4405 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1HDU_ab574045dcdc383c9d2987850c640e0c1) cvn H.B /DEST pdfmark end 722 4405 a 0 TeXcolorgray 21 w Fx(bool)p 0 0 1 TeXcolorrgb 911 4423 a SDict begin H.S end 911 4423 a 0 0 1 TeXcolorrgb -18 x Fx(operator==)p 0 0 1 TeXcolorrgb 1282 4358 a SDict begin H.R end 1282 4358 a 1282 4405 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU_ab574045dcdc383c9d2987850c640e0c1) cvn H.B /ANN pdfmark end 1282 4405 a 0 TeXcolorgray 20 w Fx(\(const)p 0 0 1 TeXcolorrgb 1526 4406 a SDict begin H.S end 1526 4406 a 0 0 1 TeXcolorrgb -1 x Fx(HDU)p 0 0 1 TeXcolorrgb 1706 4351 a SDict begin H.R end 1706 4351 a 1706 4405 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn H.B /ANN pdfmark end 1706 4405 a 0 TeXcolorgray 21 w Fx(&right\))f(const)p 0 TeXcolorgray 0 TeXcolorgray 840 4529 a Fl(equality)h(oper)o(ator)p 0 TeXcolorgray 0 TeXcolorgray 652 4636 a Fx(\225)p 0 TeXcolorgray 722 4636 a SDict begin H.S end 722 4636 a 0 TeXcolorgray 0 TeXcolorgray 722 4636 a SDict begin H.R end 722 4636 a 722 4636 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1HDU_a3b547e893d364ebc570f2998a6b193bd) cvn H.B /DEST pdfmark end 722 4636 a 0 TeXcolorgray 21 w Fx(FITSBase)h Fp(\003)p 0 0 1 TeXcolorrgb 1158 4654 a SDict begin H.S end 1158 4654 a 0 0 1 TeXcolorrgb -18 x Fx(parent)p 0 0 1 TeXcolorrgb 1366 4589 a SDict begin H.R end 1366 4589 a 1366 4636 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU_a3b547e893d364ebc570f2998a6b193bd) cvn H.B /ANN pdfmark end 1366 4636 a 0 TeXcolorgray 20 w Fx(\(\))f(const)p 0 TeXcolorgray 0 TeXcolorgray 840 4760 a Fl(r)m(eturn)g(r)m(efer)m(ence)f(to)f(the)h (pointer)g(r)m(epr)m(esenting)h(the)f(FITSBase)e(object)i(containing)h (the)p 0 0 1 TeXcolorrgb 3217 4761 a SDict begin H.S end 3217 4761 a 0 0 1 TeXcolorrgb -1 x Fl(HDU)p 0 0 1 TeXcolorrgb 3379 4712 a SDict begin H.R end 3379 4712 a 3379 4760 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn 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515 1676 a SDict begin H.S end 515 1676 a 515 1676 a SDict begin 12 H.A end 515 1676 a 515 1676 a SDict begin [ /View [/XYZ H.V] /Dest (table.79) cvn H.B /DEST pdfmark end 515 1676 a 0.5 TeXcolorgray 515 1779 2889 4 v 0 TeXcolorgray 0.5 TeXcolorgray 515 1779 V 0 TeXcolorgray 0.5 TeXcolorgray 515 1878 4 100 v 0 TeXcolorgray 671 1848 a Ft(r)m(eadFla)o(g)p 0.5 TeXcolorgray 1005 1878 V 0 TeXcolorgray 59 w Fx(read)g(the)g(image)f(data)h(if)h(true)p 0.5 TeXcolorgray 3400 1878 V 0 TeXcolorgray 0.5 TeXcolorgray 515 1882 2889 4 v 0 TeXcolorgray 0.5 TeXcolorgray 515 1882 V 0 TeXcolorgray 0.5 TeXcolorgray 515 1981 4 100 v 0 TeXcolorgray 869 1951 a Ft(k)o(e)n(y)p 0.5 TeXcolorgray 1005 1981 V 0 TeXcolorgray 60 w Fx(a)f(v)o(ector)f(of)h(strings)h(of)e (k)o(e)o(yw)o(ord)g(names)h(to)g(be)g(read)g(from)f(the)p 0 0 1 TeXcolorrgb 2937 1952 a SDict begin H.S end 2937 1952 a 0 0 1 TeXcolorrgb -1 x Fx(HDU)p 0 0 1 TeXcolorrgb 3117 1897 a SDict begin H.R end 3117 1897 a 3117 1951 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn H.B /ANN pdfmark end 3117 1951 a 0 TeXcolorgray 0.5 TeXcolorgray 3400 1981 4 100 v 0 TeXcolorgray 0.5 TeXcolorgray 515 1985 2889 4 v 0 TeXcolorgray 0.5 TeXcolorgray 515 1985 V 0 TeXcolorgray 515 2193 a Fx(Implements)p 0 0 1 TeXcolorrgb 928 2194 a SDict begin H.S end 928 2194 a 0 0 1 TeXcolorrgb -1 x Fx(CC\002ts::ExtHDU)p 0 0 1 TeXcolorrgb 1481 2136 a SDict begin H.R end 1481 2136 a 1481 2193 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1ExtHDU_a166d6a339f64d7d8d4715d33ea75195b) cvn H.B /ANN pdfmark end 1481 2193 a 0 TeXcolorgray Fx(.)p 0 TeXcolorgray 515 2339 a SDict begin H.S end 515 2339 a 0 TeXcolorgray 0 TeXcolorgray 515 2339 a SDict begin H.R end 515 2339 a 515 2339 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1ImageExt_ad0531bb4a797027e6ff77517d2e09cc6) cvn H.B /DEST pdfmark end 515 2339 a 0 TeXcolorgray 515 2377 a SDict begin H.S end 515 2377 a 515 2377 a SDict begin 12 H.A end 515 2377 a 515 2377 a SDict begin [ /View [/XYZ H.V] /Dest (paragraph.24.37.2.2) cvn H.B /DEST pdfmark end 515 2377 a 0.25 TeXcolorgray 147 x Fo(24.37.2.2)75 b(template)p Fu(<)p Fo(typename)21 b(T)e Fu(>)e Fo(v)n(oid)i Fy(CC\002ts::ImageExt)p Fu(<)d Fo(T)i Fu(>)p Fo(::scale)h(\()36 b(doub)o(le)20 b Fk(v)o(alue)37 b Fo(\))845 2623 y Fr([virtual])p 0 TeXcolorgray 515 2808 a Fx(set)21 b(the)f(BSCALE)h(k)o(e)o(yw)o(ord)d (v)n(alue)i(for)f(images)h(\(see)h(w)o(arning)e(for)g(images)h(of)g (int)h(type\))515 2954 y(F)o(or)h(primary)f(HDUs)i(and)g(image)f(e)o (xtensions,)f(this)j(will)f(add)f(\(or)g(update\))f(the)i(BSCALE)h(k)o (e)o(y-)515 3054 y(w)o(ord)g(in)h(the)g(header)-5 b(.)39 b(The)25 b(ne)n(w)f(setting)h(will)h(af)n(fect)e(future)g(image)h (array)f(read/writes)g(as)i(de-)515 3154 y(scribed)c(in)i(section)f (4.7)f(Data)i(Scaling)f(of)g(the)g(CFITSIO)h(manual.)33 b(F)o(or)23 b(table)g(e)o(xtensions)f(this)515 3253 y(function)c(does)i (nothing.)515 3400 y(WARNING:)k(If)g(the)g(image)g(contains)f Fy(integer)m(-type)f(data)i Fx(\(as)g(indicated)f(by)g(the)p 0 0 1 TeXcolorrgb 3013 3418 a SDict begin H.S end 3013 3418 a 0 0 1 TeXcolorrgb -18 x Fx(bitpix\(\))p 0 0 1 TeXcolorrgb 3262 3344 a SDict begin H.R end 3262 3344 a 3262 3400 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU_a81a2d5b001c0ae7d0a298942940189d8) cvn H.B /ANN pdfmark end 3262 3400 a 0 TeXcolorgray 25 w Fx(re-)515 3500 y(turn)c(v)n(alue\),)g(the)i(ne)n(w)f(scale)h(and)f(zero)f(v)n (alue)h(combination)e(must)i(not)g(be)h(such)f(that)g(the)h(scaled)515 3599 y(data)f(w)o(ould)f(require)g(a)h(\003oating-point)e(type)i (\(this)g(uses)g(the)h(CFITSIO)f(function)e(\002ts_get_img-)515 3699 y(_equi)n(vtype)f(to)i(mak)o(e)g(the)g(determination\).)k(If)c (this)h(situation)f(occurs,)f(the)i(function)d(will)j(thro)n(w)515 3799 y(a)p 0 0 1 TeXcolorrgb 572 3817 a SDict begin H.S end 572 3817 a 0 0 1 TeXcolorrgb -18 x Fx(FitsException)p 0 0 1 TeXcolorrgb 1034 3742 a SDict begin H.R end 1034 3742 a 1034 3799 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FitsException) cvn H.B /ANN pdfmark end 1034 3799 a 0 TeXcolorgray Fx(.)515 3946 y(Reimplemented)e(from)p 0 0 1 TeXcolorrgb 1243 3947 a SDict begin H.S end 1243 3947 a 0 0 1 TeXcolorrgb -1 x Fx(CC\002ts::HDU)p 0 0 1 TeXcolorrgb 1682 3889 a SDict begin H.R end 1682 3889 a 1682 3946 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU_a6c8e0dc188f74f681f6bfe17819b2eb9) cvn H.B /ANN pdfmark end 1682 3946 a 0 TeXcolorgray Fx(.)p 0 TeXcolorgray 515 4092 a SDict begin H.S end 515 4092 a 0 TeXcolorgray 0 TeXcolorgray 515 4092 a SDict begin H.R end 515 4092 a 515 4092 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1ImageExt_aa6d47bd83e9538694ee7d4f4d70ef33b) cvn H.B /DEST pdfmark end 515 4092 a 0 TeXcolorgray 515 4130 a SDict begin H.S end 515 4130 a 515 4130 a SDict begin 12 H.A end 515 4130 a 515 4130 a SDict begin [ /View [/XYZ H.V] /Dest (paragraph.24.37.2.3) cvn H.B /DEST pdfmark end 515 4130 a 0.25 TeXcolorgray 147 x Fo(24.37.2.3)75 b(template)p Fu(<)p Fo(typename)22 b(T)c Fu(>)g Fo(v)n(oid)h Fy(CC\002ts::ImageExt)p Fu(<)d Fo(T)j Fu(>)p Fo(::z)q(er)o(o)f(\()36 b(doub)o(le)21 b Fk(v)o(alue)36 b Fo(\))845 4376 y Fr([virtual])p 0 TeXcolorgray 515 4560 a Fx(set)21 b(the)f(BZERO)h(k)o(e)o(yw)o(ord)d(v) n(alue)i(for)f(images)h(\(see)h(w)o(arning)e(for)g(images)h(of)g(int)g (type\))515 4707 y(F)o(or)15 b(primary)e(HDUs)j(and)f(image)g(e)o (xtensions,)f(this)i(will)g(add)f(\(or)f(update\))g(the)h(BZERO)h(k)o (e)o(yw)o(ord)515 4807 y(in)24 b(the)g(header)-5 b(.)35 b(The)23 b(ne)n(w)h(setting)g(will)h(af)n(fect)e(future)g(image)g (array)g(read/writes)g(as)i(described)515 4907 y(in)c(section)f(4.7)g (Data)i(Scaling)e(of)g(the)h(CFITSIO)g(manual.)26 b(F)o(or)21 b(table)f(e)o(xtensions)g(this)h(function)515 5006 y(does)f(nothing.)p 0 TeXcolorgray 515 5156 2865 4 v 515 5255 a Fw(Generated)15 b(on)g(T)-5 b(ue)14 b(Dec)g(6)g(2011)h(16:12:51)h(f)o(or)e(CC\002ts)h (by)g(Doxygen)p 0 TeXcolorgray eop end %%Page: 129 134 TeXDict begin 129 133 bop 0 TeXcolorgray 0 0 a SDict begin /product where{pop product(Distiller)search{pop pop pop version(.)search{exch pop exch pop(3011)eq{gsave newpath 0 0 moveto closepath clip/Courier findfont 10 scalefont setfont 72 72 moveto(.)show grestore}if}{pop}ifelse}{pop}ifelse}if end 0 0 a 0 TeXcolorgray 0 TeXcolorgray 515 232 a SDict begin H.S end 515 232 a 0 TeXcolorgray 0 TeXcolorgray 515 232 a SDict begin H.R end 515 232 a 515 232 a SDict begin [ /View [/XYZ H.V] /Dest (page.129) cvn H.B /DEST pdfmark end 515 232 a 0 TeXcolorgray -29 x Fy(24.38)81 b(CC\002ts::K)n(eyw)o(ord)18 b(Class)j(Refer)o(ence)1278 b(129)p 515 236 2865 4 v 0 TeXcolorgray 515 523 a Fx(WARNING:)24 b(If)g(the)g(image)g(contains)f Fy(integer)m(-type)f(data)i Fx(\(as)g(indicated)f(by)g(the)p 0 0 1 TeXcolorrgb 3013 541 a SDict begin H.S end 3013 541 a 0 0 1 TeXcolorrgb -18 x Fx(bitpix\(\))p 0 0 1 TeXcolorrgb 3262 467 a SDict begin H.R end 3262 467 a 3262 523 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU_a81a2d5b001c0ae7d0a298942940189d8) cvn H.B /ANN pdfmark end 3262 523 a 0 TeXcolorgray 25 w Fx(re-)515 623 y(turn)c(v)n(alue\),)g(the)i(ne)n(w)f(scale)h(and)f(zero)f(v)n (alue)h(combination)e(must)i(not)g(be)h(such)f(that)g(the)h(scaled)515 722 y(data)f(w)o(ould)f(require)g(a)h(\003oating-point)e(type)i(\(this) g(uses)g(the)h(CFITSIO)f(function)e(\002ts_get_img-)515 822 y(_equi)n(vtype)f(to)i(mak)o(e)g(the)g(determination\).)k(If)c (this)h(situation)f(occurs,)f(the)i(function)d(will)j(thro)n(w)515 922 y(a)p 0 0 1 TeXcolorrgb 572 940 a SDict begin H.S end 572 940 a 0 0 1 TeXcolorrgb -18 x Fx(FitsException)p 0 0 1 TeXcolorrgb 1034 865 a SDict begin H.R end 1034 865 a 1034 922 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FitsException) cvn H.B /ANN pdfmark end 1034 922 a 0 TeXcolorgray Fx(.)515 1068 y(Reimplemented)e(from)p 0 0 1 TeXcolorrgb 1243 1069 a SDict begin H.S end 1243 1069 a 0 0 1 TeXcolorrgb -1 x Fx(CC\002ts::HDU)p 0 0 1 TeXcolorrgb 1682 1012 a SDict begin H.R end 1682 1012 a 1682 1068 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU_a2fb3adf98e8cc736b200520afed61c13) cvn H.B /ANN pdfmark end 1682 1068 a 0 TeXcolorgray Fx(.)515 1215 y(The)i(documentation)d(for)i (this)i(class)g(w)o(as)g(generated)e(from)g(the)h(follo)n(wing)f (\002le:)p 0 TeXcolorgray 652 1419 a(\225)p 0 TeXcolorgray 41 w(ImageExt.h)p 0 TeXcolorgray 515 1623 a SDict begin H.S end 515 1623 a 0 TeXcolorgray 0 TeXcolorgray 515 1623 a SDict begin H.R end 515 1623 a 515 1623 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1Keyword) cvn H.B /DEST pdfmark end 515 1623 a 0 TeXcolorgray 515 1743 a SDict begin H.S end 515 1743 a 515 1743 a SDict begin 12 H.A end 515 1743 a 515 1743 a SDict begin [ /View [/XYZ H.V] /Dest (subsection.24.38) cvn H.B /DEST pdfmark end 515 1743 a 0.25 TeXcolorgray 163 x Fq(24.38)89 b(CC\002ts::K)o(e)o(yw)o(or)o(d)21 b(Class)g(Ref)o(erence)p 0 TeXcolorgray 515 2109 a Fx(Abstract)f(base)g (class)h(de\002ning)e(the)h(interf)o(ace)g(for)p 0 0 1 TeXcolorrgb 2010 2127 a SDict begin H.S end 2010 2127 a 0 0 1 TeXcolorrgb -18 x Fx(K)n(e)o(yw)o(ord)p 0 0 1 TeXcolorrgb 2315 2053 a SDict begin H.R end 2315 2053 a 2315 2109 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Keyword) cvn H.B /ANN pdfmark end 2315 2109 a 0 TeXcolorgray 21 w Fx(objects.)515 2256 y Fr(#include)48 b Fu(<)p Fr(Keyword.h)p Fu(>)515 2403 y Fx(Inherited)18 b(by)i(CC\002ts::K)n(e)o(yData)p Fu(<)g Fx(T)h Fu(>)p Fx(.)p 0.25 TeXcolorgray 515 2669 a Fo(Pub)o(lic)d(Member)g(Functions)p 0 TeXcolorgray 515 2726 a SDict begin H.S end 515 2726 a 515 2726 a SDict begin 12 H.A end 515 2726 a 515 2726 a SDict begin [ /View [/XYZ H.V] /Dest (section*.59) cvn H.B /DEST pdfmark end 515 2726 a 0 TeXcolorgray 0 TeXcolorgray 652 2856 a Fx(\225)p 0 TeXcolorgray 722 2856 a SDict begin H.S end 722 2856 a 0 TeXcolorgray 0 TeXcolorgray 722 2856 a SDict begin H.R end 722 2856 a 722 2856 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1Keyword_a627a4ffc2199b90952dd7adf9b1ec956) cvn H.B /DEST pdfmark end 722 2856 a 0 TeXcolorgray 21 w Fx(virtual)p 0 0 1 TeXcolorrgb 981 2874 a SDict begin H.S end 981 2874 a 0 0 1 TeXcolorrgb -18 x Fp(\030)p Fx(K)n(e)o(yw)o(ord)p 0 0 1 TeXcolorrgb 1350 2799 a SDict begin H.R end 1350 2799 a 1350 2856 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Keyword_a627a4ffc2199b90952dd7adf9b1ec956) cvn H.B /ANN pdfmark end 1350 2856 a 0 TeXcolorgray 21 w Fx(\(\))p 0 TeXcolorgray 0 TeXcolorgray 840 2978 a Fl(virtual)h(destructor)p 0 TeXcolorgray 0 TeXcolorgray 652 3084 a Fx(\225)p 0 TeXcolorgray 722 3084 a SDict begin H.S end 722 3084 a 0 TeXcolorgray 0 TeXcolorgray 722 3084 a SDict begin H.R end 722 3084 a 722 3084 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1Keyword_ac92a807de0401fa32f6cdbfe96dd3083) cvn H.B /DEST pdfmark end 722 3084 a 0 TeXcolorgray 21 w Fx(virtual)p 0 0 1 TeXcolorrgb 981 3102 a SDict begin H.S end 981 3102 a 0 0 1 TeXcolorrgb -18 x Fx(K)n(e)o(yw)o(ord)p 0 0 1 TeXcolorrgb 1285 3027 a SDict begin H.R end 1285 3027 a 1285 3084 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Keyword) cvn H.B /ANN pdfmark end 1285 3084 a 0 TeXcolorgray 21 w Fp(\003)p 0 0 1 TeXcolorrgb 1368 3085 a SDict begin H.S end 1368 3085 a 0 0 1 TeXcolorrgb -1 x Fx(clone)p 0 0 1 TeXcolorrgb 1548 3027 a SDict begin H.R end 1548 3027 a 1548 3084 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Keyword_ac92a807de0401fa32f6cdbfe96dd3083) cvn H.B /ANN pdfmark end 1548 3084 a 0 TeXcolorgray 21 w Fx(\(\))h(const)g(=0)p 0 TeXcolorgray 0 TeXcolorgray 840 3206 a Fl(virtual)f(copy)h (constructor)p 0 TeXcolorgray 0 TeXcolorgray 652 3312 a Fx(\225)p 0 TeXcolorgray 722 3312 a SDict begin H.S end 722 3312 a 0 TeXcolorgray 0 TeXcolorgray 722 3312 a SDict begin H.R end 722 3312 a 722 3312 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1Keyword_ac0e829b447ad71bb4405d196a693a8c6) cvn H.B /DEST pdfmark end 722 3312 a 0 TeXcolorgray 21 w Fx(const)g(String)g(&)p 0 0 1 TeXcolorrgb 1248 3313 a SDict begin H.S end 1248 3313 a 0 0 1 TeXcolorrgb -1 x Fx(comment)p 0 0 1 TeXcolorrgb 1557 3265 a SDict begin H.R end 1557 3265 a 1557 3312 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Keyword_ac0e829b447ad71bb4405d196a693a8c6) cvn H.B /ANN pdfmark end 1557 3312 a 0 TeXcolorgray 21 w Fx(\(\))g(const)p 0 TeXcolorgray 0 TeXcolorgray 840 3434 a Fl(r)m(eturn)g(the)f(comment)h(\002eld)f(of)g (the)g(k)o(e)n(ywor)m(d)p 0 TeXcolorgray 0 TeXcolorgray 652 3539 a Fx(\225)p 0 TeXcolorgray 722 3539 a SDict begin H.S end 722 3539 a 0 TeXcolorgray 0 TeXcolorgray 722 3539 a SDict begin H.R end 722 3539 a 722 3539 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1Keyword_a92d1b379da32e959be3b2fb2fb93548e) cvn H.B /DEST pdfmark end 722 3539 a 0 TeXcolorgray 21 w Fx(\002ts\002le)i Fp(\003)p 0 0 1 TeXcolorrgb 1034 3540 a SDict begin H.S end 1034 3540 a 0 0 1 TeXcolorrgb -1 x Fx(\002tsPointer)p 0 0 1 TeXcolorrgb 1375 3483 a SDict begin H.R end 1375 3483 a 1375 3539 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Keyword_a92d1b379da32e959be3b2fb2fb93548e) cvn H.B /ANN pdfmark end 1375 3539 a 0 TeXcolorgray 21 w Fx(\(\))f(const)p 0 TeXcolorgray 0 TeXcolorgray 840 3662 a Fl(r)m(eturn)g(a)f(pointer)h(to)f(the)p 0 0 1 TeXcolorrgb 1520 3663 a SDict begin H.S end 1520 3663 a 0 0 1 TeXcolorrgb -1 x Fl(FITS)p 0 0 1 TeXcolorrgb 1670 3611 a SDict begin H.R end 1670 3611 a 1670 3662 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1FITS) cvn H.B /ANN pdfmark end 1670 3662 a 0 TeXcolorgray 19 w Fl(\002le)g(containing)h (the)f(par)m(ent)p 0 0 1 TeXcolorrgb 2458 3663 a SDict begin H.S end 2458 3663 a 0 0 1 TeXcolorrgb -1 x Fl(HDU)p 0 0 1 TeXcolorrgb 2620 3613 a SDict begin H.R end 2620 3613 a 2620 3662 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn H.B /ANN pdfmark end 2620 3662 a 0 TeXcolorgray Fl(.)p 0 TeXcolorgray 0 TeXcolorgray 652 3767 a Fx(\225)p 0 TeXcolorgray 722 3767 a SDict begin H.S end 722 3767 a 0 TeXcolorgray 0 TeXcolorgray 722 3767 a SDict begin H.R end 722 3767 a 722 3767 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1Keyword_a818711c7e71c3d867bb8e9445ddf1335) cvn H.B /DEST pdfmark end 722 3767 a 0 TeXcolorgray 0 0 1 TeXcolorrgb 743 3785 a SDict begin H.S end 743 3785 a 0 0 1 TeXcolorrgb -18 x Fx(V)-9 b(alueT)i(ype)p 0 0 1 TeXcolorrgb 1096 3711 a SDict begin H.R end 1096 3711 a 1096 3767 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest 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TeXcolorrgb 985 3249 a SDict begin H.S end 985 3249 a 0 0 1 TeXcolorrgb -18 x Fx(K)n(e)o(yw)o(ord::setV)-9 b(alue)p 0 0 1 TeXcolorrgb 1617 3175 a SDict begin H.R end 1617 3175 a 1617 3231 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Keyword_abba7b36cc6c5e794d224efce8542128a) cvn H.B /ANN pdfmark end 1617 3231 a 0 TeXcolorgray Fx(.)515 3378 y(K)n(e)o(yw)o(ords)23 b(consists)i(of)f(a)h(name,)f(a)h(v)n(alue)f(and)g(a)g(comment)f (\002eld.)38 b(Concrete)24 b(templated)f(sub-)515 3478 y(classes,)e(K)n(e)o(yData)p Fu(<)p Fx(T)p Fu(>)p Fx(,)d(ha)n(v)o(e)h (a)i(data)f(member)f(that)h(holds)g(the)g(v)n(alue)g(of)f(k)o(e)o(yw)o (ord.)515 3625 y(T)-7 b(ypically)i(,)26 b(the)f(mandatory)f(k)o(e)o(yw) o(ords)g(for)i(a)g(gi)n(v)o(en)p 0 0 1 TeXcolorrgb 2119 3626 a SDict begin H.S end 2119 3626 a 0 0 1 TeXcolorrgb -1 x Fx(HDU)p 0 0 1 TeXcolorrgb 2299 3571 a SDict begin H.R end 2299 3571 a 2299 3625 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn H.B /ANN pdfmark end 2299 3625 a 0 TeXcolorgray 27 w Fx(type)f(are)h(not)g(stored)f(as)h(object)g (of)515 3724 y(type)p 0 0 1 TeXcolorrgb 689 3742 a SDict begin H.S end 689 3742 a 0 0 1 TeXcolorrgb -18 x Fx(K)n(e)o(yw)o(ord)p 0 0 1 TeXcolorrgb 994 3668 a SDict begin H.R end 994 3668 a 994 3724 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Keyword) cvn H.B /ANN pdfmark end 994 3724 a 0 TeXcolorgray Fx(,)33 b(b)n(ut)e(as)h(intrinsic)e(data)h (types.)56 b(The)p 0 0 1 TeXcolorrgb 2171 3742 a SDict begin H.S end 2171 3742 a 0 0 1 TeXcolorrgb -18 x Fx(K)n(e)o(yw)o(ord)p 0 0 1 TeXcolorrgb 2476 3668 a SDict begin H.R end 2476 3668 a 2476 3724 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Keyword) cvn H.B /ANN pdfmark end 2476 3724 a 0 TeXcolorgray 31 w Fx(hierarchy)29 b(is)i(used)g(to)g (store)515 3824 y(user)n(-supplied)18 b(information.)515 3960 y SDict begin H.S end 515 3960 a 515 3960 a SDict begin 12 H.A end 515 3960 a 515 3960 a SDict begin [ /View [/XYZ H.V] /Dest (subsubsection.24.38.2) cvn H.B /DEST pdfmark end 515 3960 a 0.25 TeXcolorgray 129 x Fo(24.38.2)75 b(Constructor)19 b(&)f(Destructor)h(Documentation)p 0 TeXcolorgray 0 TeXcolorgray 515 4292 a SDict begin H.S end 515 4292 a 0 TeXcolorgray 0 TeXcolorgray 515 4292 a SDict begin H.R end 515 4292 a 515 4292 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1Keyword_a775cd61e991612a512d62fa722b7e64a) cvn H.B /DEST pdfmark end 515 4292 a 0 TeXcolorgray 515 4329 a SDict begin H.S end 515 4329 a 515 4329 a SDict begin 12 H.A end 515 4329 a 515 4329 a SDict begin [ /View [/XYZ H.V] /Dest (paragraph.24.38.2.1) cvn H.B /DEST pdfmark end 515 4329 a 0.25 TeXcolorgray 147 x Fo(24.38.2.1)75 b(CC\002ts::K)o(e)o(yw)o(or)o(d::K)o(e)o(yw)o(or)o(d)22 b(\()35 b(const)19 b(String)f(&)f Fk(ke)o(yname)q(,)36 b Fy(V)-8 b(alueT)i(ype)17 b Fk(ke)o(ytype)q(,)35 b Fy(HDU)17 b Fp(\003)845 4576 y Fk(p,)35 b Fo(const)18 b(String)g(&)f Fk(comment)j(=)c Fr("")34 b Fo(\))71 b Fr([protected])p 0 TeXcolorgray 0 0 1 TeXcolorrgb 515 4778 a SDict begin H.S end 515 4778 a 0 0 1 TeXcolorrgb -18 x Fx(K)n(e)o(yw)o(ord)p 0 0 1 TeXcolorrgb 820 4703 a SDict begin H.R end 820 4703 a 820 4760 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Keyword) cvn H.B /ANN pdfmark end 820 4760 a 0 TeXcolorgray 20 w Fx(constructor)-5 b(.)515 4907 y(This)20 b(is)h(the)f(common)f(beha)n(vior)f(of)i(K)n(e)o(yw)o(ords)f (of)h(an)o(y)g(type.)k(Constructor)19 b(is)i(protected)e(as)i(the)515 5006 y(class)g(is)g(abstract.)p 0 TeXcolorgray 515 5156 2865 4 v 515 5255 a Fw(Generated)15 b(on)g(T)-5 b(ue)14 b(Dec)g(6)g(2011)h(16:12:51)h(f)o(or)e(CC\002ts)h(by)g(Doxygen)p 0 TeXcolorgray eop end %%Page: 131 136 TeXDict begin 131 135 bop 0 TeXcolorgray 0 0 a SDict begin /product where{pop product(Distiller)search{pop pop pop version(.)search{exch pop exch pop(3011)eq{gsave newpath 0 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TeXcolorgray 0.5 TeXcolorgray 515 1453 V 0 TeXcolorgray 515 1683 a Fy(Allo)o(wed)d(T)g(types:)23 b Fx(This)15 b(must)h(cop)o(y)f Ft(ne)o(wV)-9 b(alue)14 b Fx(to)i(a)g(data)f(member)f(of)i(type)f(U)h(in)g(the)p 0 0 1 TeXcolorrgb 3074 1701 a SDict begin H.S end 3074 1701 a 0 0 1 TeXcolorrgb -18 x Fx(K)n(e)o(yw)o(ord)p 0 0 1 TeXcolorrgb 3379 1627 a SDict begin H.R end 3379 1627 a 3379 1683 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Keyword) cvn H.B /ANN pdfmark end 3379 1683 a 0 TeXcolorgray 515 1782 a Fx(subclass)31 b Fy(K)n(eyData)p Fu(<)p Fy(U)p Fu(>)d Fx(\(see)j(description)f(for)p 0 0 1 TeXcolorrgb 2049 1800 a SDict begin H.S end 2049 1800 a 0 0 1 TeXcolorrgb -18 x Fx(K)n(e)o(yw)o(ord::v) n(alue)p 0 0 1 TeXcolorrgb 2578 1726 a SDict begin H.R end 2578 1726 a 2578 1782 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Keyword_a65b457d993a6979180d648324b494fbb) cvn H.B /ANN pdfmark end 2578 1782 a 0 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TeXcolorgray 0.5 TeXcolorgray 515 2258 4 100 v 0 TeXcolorgray 568 2228 a(\003oat)p 0.5 TeXcolorgray 1945 2258 V 0 TeXcolorgray 1282 w(double,)e(\003oat)p 0.5 TeXcolorgray 3376 2258 V 0 TeXcolorgray 0.5 TeXcolorgray 515 2261 2865 4 v 0 TeXcolorgray 0.5 TeXcolorgray 515 2357 4 100 v 0 TeXcolorgray 568 2328 a(double)p 0.5 TeXcolorgray 1945 2357 V 0 TeXcolorgray 1202 w(double,)g(\003oat)h(\(will)h(lose)f(precision\))p 0.5 TeXcolorgray 3376 2357 V 0 TeXcolorgray 0.5 TeXcolorgray 515 2361 2865 4 v 0 TeXcolorgray 0.5 TeXcolorgray 515 2457 4 100 v 0 TeXcolorgray 568 2427 a(int)p 0.5 TeXcolorgray 1945 2457 V 0 TeXcolorgray 1342 w(double,)f(\003oat,)h(int,)g(inte)o (ger)f(string)p 0.5 TeXcolorgray 3376 2457 V 0 TeXcolorgray 0.5 TeXcolorgray 515 2460 2865 4 v 0 TeXcolorgray 0 TeXcolorgray 515 2513 a SDict begin H.S end 515 2513 a 0 TeXcolorgray 0 TeXcolorgray 515 2513 a SDict begin H.R end 515 2513 a 515 2513 a SDict begin [ /View [/XYZ H.V] /Dest 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TeXcolorrgb 820 3613 a SDict begin H.R end 820 3613 a 820 3669 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Keyword) cvn H.B /ANN pdfmark end 820 3669 a 0 TeXcolorgray Fx(,)i Fy(K)n(eyData)p Fu(<)p Fy(U)p Fu(>)p Fx(.)37 b(Normally)25 b(U)h(is)g(set)g(when)f(reading)f(the)p 0 0 1 TeXcolorrgb 2669 3687 a SDict begin H.S end 2669 3687 a 0 0 1 TeXcolorrgb -18 x Fx(K)n(e)o(yw)o(ord)p 0 0 1 TeXcolorrgb 2973 3613 a SDict begin H.R end 2973 3613 a 2973 3669 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Keyword) cvn H.B /ANN pdfmark end 2973 3669 a 0 TeXcolorgray 26 w Fx(in)i(from)f(the)515 3768 y(\002le,)20 b(and)g(is)h(limited)f(to)h(types)f(int,)g(double,)e (string,)i(bool,)f(and)h(comple)o(x)p Fu(<)p Fx(\003oat)p Fu(>)p Fx(.)h(\(The)f(e)o(xcep-)515 3868 y(tion)26 b(is)h(when)e(the)i (user)f(has)g(created)g(and)f(added)g(a)i(ne)n(w)p 0 0 1 TeXcolorrgb 2255 3886 a SDict begin H.S end 2255 3886 a 0 0 1 TeXcolorrgb -18 x Fx(K)n(e)o(yw)o(ord)p 0 0 1 TeXcolorrgb 2560 3812 a SDict begin H.R end 2560 3812 a 2560 3868 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1Keyword) cvn H.B /ANN pdfmark end 2560 3868 a 0 TeXcolorgray 26 w Fx(using)f(an)p 0 0 1 TeXcolorrgb 2898 3886 a SDict begin H.S end 2898 3886 a 0 0 1 TeXcolorrgb -18 x Fx(HDU::addK)n(e)o(y)p 0 0 1 TeXcolorrgb 3379 3812 a SDict begin H.R end 3379 3812 a 3379 3868 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU_a9e9a82fe03e3396b18943ecb649b479f) cvn H.B /ANN pdfmark end 3379 3868 a 0 TeXcolorgray 515 3968 a Fx(function,)20 b(in)j(which)e(case)i(the)o(y)f(might)f(ha)n(v)o(e)h(speci\002ed)g (other)f(types)h(for)f(U.\))i(T)-7 b(o)22 b(a)n(v)n(oid)g(compi-)515 4067 y(lation)f(errors,)g(the)h(user)f(should)g(generally)f(try)i(to)g (pro)o(vide)d(a)k Ft(val)e Fx(of)h(type)f(T)h(=)g(type)f(U,)h(though) 515 4167 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cvn H.B /ANN pdfmark end 1034 2008 a 0 TeXcolorgray 24 w Fx(\(std::v)n(alarray)p Fu(<)j Fx(S)j Fu(>)g Fx(&image,)f(const)g (std::v)o(ector)p Fu(<)f Fx(long)h Fu(>)h Fx(&\002rstV)-9 b(erte)o(x,)722 2108 y(const)31 b(std::v)o(ector)p Fu(<)f Fx(long)g Fu(>)h Fx(&lastV)-9 b(erte)o(x,)33 b(const)e(std::v)o(ector)p Fu(<)e Fx(long)h Fu(>)i Fx(&stride,)h(S)722 2207 y Fp(\003)p Fx(nullV)-9 b(alue\))p 0 TeXcolorgray 0 TeXcolorgray 840 2329 a Fl(r)m(ead)20 b(an)g(ima)o(g)o(e)f(subset)h(into)f(valarr)o (ay)h(ima)o(g)o(e)o(,)g(pr)m(ocessing)g(null)f(values)p 0 TeXcolorgray 652 2435 a Fx(\225)p 0 TeXcolorgray 41 w(virtual)c(v)n(oid)p 0 0 1 TeXcolorrgb 1117 2436 a SDict begin H.S end 1117 2436 a 0 0 1 TeXcolorrgb -1 x Fx(readData)p 0 0 1 TeXcolorrgb 1416 2378 a SDict begin H.R end 1416 2378 a 1416 2435 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1PHDU_a496d7e092054cb21565f4b1bf3d977f4) cvn H.B /ANN pdfmark end 1416 2435 a 0 TeXcolorgray 16 w Fx(\(bool)f(readFlag=f)o(alse,)h(const)g(std::v)o(ector)p Fu(<)e Fx(String)i Fu(>)g Fx(&k)o(e)o(ys=std-)722 2534 y(::v)o(ector)p Fu(<)k Fx(String)h Fu(>)p Fx(\(\)\)=0)p 0 TeXcolorgray 0 TeXcolorgray 840 2656 a Fl(r)m(ead)g(primary)p 0 0 1 TeXcolorrgb 1253 2657 a SDict begin H.S end 1253 2657 a 0 0 1 TeXcolorrgb -1 x Fl(HDU)p 0 0 1 TeXcolorrgb 1415 2608 a SDict begin H.R end 1415 2608 a 1415 2656 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn H.B /ANN pdfmark end 1415 2656 a 0 TeXcolorgray 18 w Fl(data)p 0 TeXcolorgray 652 2762 a Fx(\225)p 0 TeXcolorgray 41 w(virtual)g(v)n(oid)p 0 0 1 TeXcolorrgb 1127 2763 a SDict begin H.S end 1127 2763 a 0 0 1 TeXcolorrgb -1 x Fx(scale)p 0 0 1 TeXcolorrgb 1292 2705 a SDict begin H.R end 1292 2705 a 1292 2762 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1PHDU_a75f86db856e2cc7772a97d9ded3a633c) cvn H.B /ANN pdfmark end 1292 2762 a 0 TeXcolorgray 21 w Fx(\(double)f(v)n(alue\))p 0 TeXcolorgray 0 TeXcolorgray 840 2884 a Fl(set)g(the)g(BSCALE)e(k)o(e)n(ywor)m(d)k(value)e(for)g (ima)o(g)o(es)h(\(see)f(warning)h(for)e(ima)o(g)o(es)i(of)f(int)g (type\))p 0 TeXcolorgray 0 TeXcolorgray 652 2989 a Fx(\225)p 0 TeXcolorgray 722 2989 a SDict begin H.S end 722 2989 a 0 TeXcolorgray 0 TeXcolorgray 722 2989 a SDict begin H.R end 722 2989 a 722 2989 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1PHDU_a0205708df85524ee37eddb7485604591) cvn H.B /DEST pdfmark end 722 2989 a 0 TeXcolorgray 21 w Fx(virtual)h(double)p 0 0 1 TeXcolorrgb 1227 2990 a SDict begin H.S end 1227 2990 a 0 0 1 TeXcolorrgb -1 x Fx(scale)p 0 0 1 TeXcolorrgb 1393 2933 a SDict begin H.R end 1393 2933 a 1393 2989 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1PHDU_a0205708df85524ee37eddb7485604591) cvn H.B /ANN pdfmark end 1393 2989 a 0 TeXcolorgray 21 w Fx(\(\))g(const)p 0 TeXcolorgray 0 TeXcolorgray 840 3111 a Fl(r)m(eturn)g(the)f(BSCALE)e(k)o(e)n(ywor)m (d)k(value)p 0 TeXcolorgray 0 TeXcolorgray 652 3217 a Fx(\225)p 0 TeXcolorgray 722 3217 a SDict begin H.S end 722 3217 a 0 TeXcolorgray 0 TeXcolorgray 722 3217 a SDict begin H.R end 722 3217 a 722 3217 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1PHDU_a07a22e72dfba4443dccd614bd5cc2216) cvn H.B /DEST pdfmark end 722 3217 a 0 TeXcolorgray 21 w Fx(bool)p 0 0 1 TeXcolorrgb 911 3235 a SDict begin H.S end 911 3235 a 0 0 1 TeXcolorrgb -18 x Fx(simple)p 0 0 1 TeXcolorrgb 1133 3160 a SDict begin H.R end 1133 3160 a 1133 3217 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1PHDU_a07a22e72dfba4443dccd614bd5cc2216) cvn H.B /ANN pdfmark end 1133 3217 a 0 TeXcolorgray 21 w Fx(\(\))f(const)p 0 TeXcolorgray 0 TeXcolorgray 840 3339 a Fl(Returns)g(the)f(value)g(of)g(the)g (Primary')m(s)g(SIMPLE)f(k)o(e)n(ywor)m(d.)p 0 TeXcolorgray 652 3444 a Fx(\225)p 0 TeXcolorgray 41 w Fi(template)p Fg(<)p Fi(typename)j(S)c Fg(>)722 3544 y Fx(v)n(oid)p 0 0 1 TeXcolorrgb 884 3545 a SDict begin H.S end 884 3545 a 0 0 1 TeXcolorrgb -1 x Fx(write)p 0 0 1 TeXcolorrgb 1055 3487 a SDict begin H.R end 1055 3487 a 1055 3544 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1PHDU_ad243434dfe8739e7851dfd6f7f4c2c20) cvn H.B /ANN pdfmark end 1055 3544 a 0 TeXcolorgray 15 w Fx(\(const)e(std::v)o (ector)p Fu(<)f Fx(long)g Fu(>)h Fx(&\002rst,)i(long)d(nElements,)h (const)g(std::v)n(alarray)p Fu(<)722 3643 y Fx(S)21 b Fu(>)f Fx(&data,)g(S)h Fp(\003)p Fx(nullV)-9 b(alue\))p 0 TeXcolorgray 0 TeXcolorgray 840 3765 a Fl(Write)20 b(a)f(set)h(of)f(pixels)g(to)h(an)g(ima)o(g)o(e)g(e)o(xtension)g(with)f (the)h(\002r)o(st)f(pixel)h(speci\002ed)h(by)e(an)h(n-tuple)o(,)840 3857 y(pr)m(ocessing)g(unde\002ned)i(data.)p 0 TeXcolorgray 652 3962 a Fx(\225)p 0 TeXcolorgray 41 w Fi(template)p Fg(<)p Fi(typename)f(S)c Fg(>)722 4062 y Fx(v)n(oid)p 0 0 1 TeXcolorrgb 890 4063 a SDict begin H.S end 890 4063 a 0 0 1 TeXcolorrgb -1 x Fx(write)p 0 0 1 TeXcolorrgb 1061 4005 a SDict begin H.R end 1061 4005 a 1061 4062 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1PHDU_a74015a1d158ef9f04f875dca9818f5ea) cvn H.B /ANN pdfmark end 1061 4062 a 0 TeXcolorgray 22 w Fx(\(long)j(\002rst,)i (long)f(nElements,)f(const)i(std::v)n(alarray)p Fu(<)d Fx(S)j Fu(>)g Fx(&data,)f(S)h Fp(\003)p Fx(null-)722 4161 y(V)-9 b(alue\))p 0 TeXcolorgray 0 TeXcolorgray 840 4283 a Fl(write)18 b(arr)o(ay)h(to)f(ima)o(g)o(e)h(starting)f(with) f(a)i(speci\002ed)g(pixel)f(and)h(allowing)f(unde\002ned)j(data)d(to)g (be)840 4375 y(pr)m(ocessed)p 0 TeXcolorgray 0 TeXcolorgray 652 4480 a Fx(\225)p 0 TeXcolorgray 722 4480 a SDict begin H.S end 722 4480 a 0 TeXcolorgray 0 TeXcolorgray 722 4480 a SDict begin H.R end 722 4480 a 722 4480 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1PHDU_a683d99bb3a29bf887bfd3d988202dddf) cvn H.B /DEST pdfmark end 722 4480 a 0 TeXcolorgray 21 w Fi(template)p Fg(<)p Fi(typename)j(S)c Fg(>)722 4580 y Fx(v)n(oid)p 0 0 1 TeXcolorrgb 884 4581 a SDict begin H.S end 884 4581 a 0 0 1 TeXcolorrgb -1 x Fx(write)p 0 0 1 TeXcolorrgb 1055 4523 a SDict begin H.R end 1055 4523 a 1055 4580 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1PHDU_a683d99bb3a29bf887bfd3d988202dddf) cvn H.B /ANN pdfmark end 1055 4580 a 0 TeXcolorgray 15 w Fx(\(const)e(std::v)o (ector)p Fu(<)f Fx(long)g Fu(>)h Fx(&\002rst,)i(long)d(nElements,)h (const)g(std::v)n(alarray)p Fu(<)722 4679 y Fx(S)21 b Fu(>)f Fx(&data\))p 0 TeXcolorgray 0 TeXcolorgray 840 4801 a Fl(write)f(arr)o(ay)g(starting)g(fr)m(om)g(speci\002ed)h (n-tuple)o(,)f(without)g(unde\002ned)i(data)f(pr)m(ocessing)p 0 TeXcolorgray 0 TeXcolorgray 652 4907 a Fx(\225)p 0 TeXcolorgray 722 4907 a SDict begin H.S end 722 4907 a 0 TeXcolorgray 0 TeXcolorgray 722 4907 a SDict begin H.R end 722 4907 a 722 4907 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1PHDU_a0025ef99428d619903a15d23e1eeed2a) cvn H.B /DEST pdfmark end 722 4907 a 0 TeXcolorgray 21 w Fi(template)p Fg(<)p Fi(typename)h(S)c Fg(>)722 5006 y Fx(v)n(oid)p 0 0 1 TeXcolorrgb 889 5007 a SDict begin H.S end 889 5007 a 0 0 1 TeXcolorrgb -1 x Fx(write)p 0 0 1 TeXcolorrgb 1060 4950 a SDict begin H.R end 1060 4950 a 1060 5006 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1PHDU_a0025ef99428d619903a15d23e1eeed2a) cvn H.B /ANN pdfmark end 1060 5006 a 0 TeXcolorgray 20 w Fx(\(long)i(\002rst,)i(long)e(nElements,)g(const)h(std::v)n (alarray)p Fu(<)f Fx(S)i Fu(>)f Fx(&data\))p 0 TeXcolorgray 515 5156 2865 4 v 515 5255 a Fw(Generated)15 b(on)g(T)-5 b(ue)14 b(Dec)g(6)g(2011)h(16:12:51)h(f)o(or)e(CC\002ts)h(by)g(Doxygen) p 0 TeXcolorgray eop end %%Page: 134 139 TeXDict begin 134 138 bop 0 TeXcolorgray 0 0 a SDict begin /product where{pop product(Distiller)search{pop pop pop version(.)search{exch pop exch pop(3011)eq{gsave newpath 0 0 moveto closepath clip/Courier findfont 10 scalefont setfont 72 72 moveto(.)show grestore}if}{pop}ifelse}{pop}ifelse}if end 0 0 a 0 TeXcolorgray 0 TeXcolorgray 515 232 a SDict begin H.S end 515 232 a 0 TeXcolorgray 0 TeXcolorgray 515 232 a SDict begin H.R end 515 232 a 515 232 a SDict begin [ /View [/XYZ H.V] /Dest (page.134) cvn H.B /DEST pdfmark end 515 232 a 0 TeXcolorgray -29 x Fy(24.39)81 b(CC\002ts::PHDU)19 b(Class)i(Refer)o(ence)1367 b(134)p 515 236 2865 4 v 0 TeXcolorgray 0 TeXcolorgray 0 TeXcolorgray 840 523 a Fl(write)19 b(arr)o(ay)g(starting)g(fr)m(om)g(speci\002ed)h(pixel)f (number)-8 b(,)19 b(without)g(unde\002ned)i(data)f(pr)m(ocessing)p 0 TeXcolorgray 652 631 a Fx(\225)p 0 TeXcolorgray 41 w Fi(template)p Fg(<)p Fi(typename)h(S)c Fg(>)722 731 y Fx(v)n(oid)p 0 0 1 TeXcolorrgb 896 732 a SDict begin H.S end 896 732 a 0 0 1 TeXcolorrgb -1 x Fx(write)p 0 0 1 TeXcolorrgb 1067 674 a SDict begin H.R end 1067 674 a 1067 731 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1PHDU_a20f16c9a8d60de748ed7697afbc91863) cvn H.B /ANN pdfmark end 1067 731 a 0 TeXcolorgray 28 w Fx(\(const)26 b(std::v)o(ector)p Fu(<)g Fx(long)g Fu(>)i Fx(&\002rstV)-9 b(erte)o(x,)27 b(const)g(std::v)o(ector)p Fu(<)f Fx(long)g Fu(>)722 830 y Fx(&lastV)-9 b(erte)o(x,)16 b(const)h(std::v)o(ector)p Fu(<)e Fx(long)h Fu(>)h Fx(&stride,)g(const) g(std::v)n(alarray)p Fu(<)e Fx(S)j Fu(>)e Fx(&data\))p 0 TeXcolorgray 0 TeXcolorgray 840 1054 a Fl(write)j(a)g(subset)g(\(g)o (ener)o(alize)h(slice\))f(of)g(data)g(to)g(the)g(ima)o(g)o(e)p 0 TeXcolorgray 652 1162 a Fx(\225)p 0 TeXcolorgray 41 w(virtual)h(v)n(oid)p 0 0 1 TeXcolorrgb 1127 1163 a SDict begin H.S end 1127 1163 a 0 0 1 TeXcolorrgb -1 x Fx(zero)p 0 0 1 TeXcolorrgb 1269 1124 a SDict begin H.R end 1269 1124 a 1269 1162 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1PHDU_abcc25c1d318581d9b650a784b799285d) cvn H.B /ANN pdfmark end 1269 1162 a 0 TeXcolorgray 21 w Fx(\(double)f(v)n(alue\))p 0 TeXcolorgray 0 TeXcolorgray 840 1287 a Fl(set)g(the)g(BZERO)e(k)o(e)n(ywor)m(d)j(value)g(for)f(ima) o(g)o(es)h(\(see)f(warning)g(for)g(ima)o(g)o(es)h(of)f(int)f(type\))p 0 TeXcolorgray 0 TeXcolorgray 652 1395 a Fx(\225)p 0 TeXcolorgray 722 1395 a SDict begin H.S end 722 1395 a 0 TeXcolorgray 0 TeXcolorgray 722 1395 a SDict begin H.R end 722 1395 a 722 1395 a SDict begin [ /View [/XYZ H.V] /Dest (classCCfits_1_1PHDU_a04b7249f250f651a96b6423930c6e4e2) cvn H.B /DEST pdfmark end 722 1395 a 0 TeXcolorgray 21 w Fx(virtual)i(double)p 0 0 1 TeXcolorrgb 1227 1396 a SDict begin H.S end 1227 1396 a 0 0 1 TeXcolorrgb -1 x Fx(zero)p 0 0 1 TeXcolorrgb 1370 1357 a SDict begin H.R end 1370 1357 a 1370 1395 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1PHDU_a04b7249f250f651a96b6423930c6e4e2) cvn H.B /ANN pdfmark end 1370 1395 a 0 TeXcolorgray 21 w Fx(\(\))g(const)p 0 TeXcolorgray 0 TeXcolorgray 840 1519 a Fl(r)m(eturn)g(the)f(BZERO)e(k)o(e)n(ywor)m (d)j(value)p 0.25 TeXcolorgray 515 1788 a Fo(Pr)o(otected)e(Member)g (Functions)p 0 TeXcolorgray 515 1844 a SDict begin H.S end 515 1844 a 515 1844 a SDict begin 12 H.A end 515 1844 a 515 1844 a SDict begin [ /View [/XYZ H.V] /Dest (section*.62) cvn H.B /DEST pdfmark end 515 1844 a 0 0 1 TeXcolorrgb 0 TeXcolorgray 652 1976 a Fx(\225)p 0 0 1 TeXcolorrgb 722 1977 a SDict begin H.S end 722 1977 a 0 0 1 TeXcolorrgb -1 x Fx(PHDU)p 0 0 1 TeXcolorrgb 948 1922 a SDict begin H.R end 948 1922 a 948 1976 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1PHDU_abd7c1f8131fa1acd2c638a9b9372e55a) cvn H.B /ANN pdfmark end 948 1976 a 0 TeXcolorgray 21 w Fx(\(const)p 0 0 1 TeXcolorrgb 1193 1977 a SDict begin H.S end 1193 1977 a 0 0 1 TeXcolorrgb -1 x Fx(PHDU)p 0 0 1 TeXcolorrgb 1419 1922 a SDict begin H.R end 1419 1922 a 1419 1976 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1PHDU) cvn H.B /ANN pdfmark end 1419 1976 a 0 TeXcolorgray 20 w Fx(&right\))p 0 TeXcolorgray 0 TeXcolorgray 840 2101 a Fl(copy)i(constructor)p 0 0 1 TeXcolorrgb 0 TeXcolorgray 652 2209 a Fx(\225)p 0 0 1 TeXcolorrgb 722 2210 a SDict begin H.S end 722 2210 a 0 0 1 TeXcolorrgb -1 x Fx(PHDU)p 0 0 1 TeXcolorrgb 948 2155 a SDict begin H.R end 948 2155 a 948 2209 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1PHDU_a567c35924aaecf4841e2a467667f2e76) cvn H.B /ANN pdfmark end 948 2209 a 0 TeXcolorgray 21 w Fx(\(FITSBase)h Fp(\003)p Fx(p,)e(int)h(bpix,)g(int)g(naxis,)g(const)g(std::v)o(ector)p Fu(<)e Fx(long)i Fu(>)g Fx(&ax)o(es\))p 0 TeXcolorgray 0 TeXcolorgray 840 2333 a Fl(Writing)f(Primary)p 0 0 1 TeXcolorrgb 1355 2334 a SDict begin H.S end 1355 2334 a 0 0 1 TeXcolorrgb -1 x Fl(HDU)p 0 0 1 TeXcolorrgb 1517 2285 a SDict begin H.R end 1517 2285 a 1517 2333 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn H.B /ANN pdfmark end 1517 2333 a 0 TeXcolorgray 19 w Fl(constructor)-8 b(,)19 b(called)h(by)f(PrimaryHDU)p Fe(<)p Fl(T)p Fe(>)f Fl(class.)p 0 0 1 TeXcolorrgb 0 TeXcolorgray 652 2441 a Fx(\225)p 0 0 1 TeXcolorrgb 722 2442 a SDict begin H.S end 722 2442 a 0 0 1 TeXcolorrgb -1 x Fx(PHDU)p 0 0 1 TeXcolorrgb 948 2387 a SDict begin H.R end 948 2387 a 948 2441 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1PHDU_a6edaf40ab3bc6b1450d41ba3f55485d1) cvn H.B /ANN pdfmark end 948 2441 a 0 TeXcolorgray 21 w Fx(\(FITSBase)j Fp(\003)p Fx(p=0\))p 0 TeXcolorgray 0 TeXcolorgray 840 2566 a Fl(Reading)f(Primary)p 0 0 1 TeXcolorrgb 1376 2567 a SDict begin H.S end 1376 2567 a 0 0 1 TeXcolorrgb -1 x Fl(HDU)p 0 0 1 TeXcolorrgb 1538 2518 a SDict begin H.R end 1538 2518 a 1538 2566 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1HDU) cvn H.B /ANN pdfmark end 1538 2566 a 0 TeXcolorgray 18 w Fl(constructor)-8 b(.)p 0 TeXcolorgray 652 2674 a Fx(\225)p 0 TeXcolorgray 41 w(virtual)20 b(v)n(oid)p 0 0 1 TeXcolorrgb 1127 2675 a SDict begin H.S end 1127 2675 a 0 0 1 TeXcolorrgb -1 x Fx(initRead)p 0 0 1 TeXcolorrgb 1408 2618 a SDict begin H.R end 1408 2618 a 1408 2674 a SDict begin [ /Color [1 0 0] /H /I /Border [0 0 0] /Subtype /Link /Dest (classCCfits_1_1PHDU_a04e290b1a4d638db9dee0e6a03d30ede) cvn H.B /ANN pdfmark end 1408 2674 a 0 TeXcolorgray 21 w Fx(\(\))515 2810 y SDict begin H.S end 515 2810 a 515 2810 a SDict begin 12 H.A end 515 2810 a 515 2810 a SDict begin [ /View [/XYZ H.V] /Dest (subsubsection.24.39.1) cvn H.B /DEST pdfmark end 515 2810 a 0.25 TeXcolorgray 132 x Fo(24.39.1)75 b(Detailed)18 b(Description)p 0 TeXcolorgray 515 3145 a Fx(class)j(representing)d(the)i(primary)p 0 0 1 TeXcolorrgb 1534 3146 a SDict begin H.S end 1534 3146 a 0 0 1 TeXcolorrgb -1 x Fx(HDU)p 0 0 1 TeXcolorrgb 1714 3091 a SDict begin H.R end 1714 3091 a 1714 3145 a SDict begin [ /Color [1 0 0] /H 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