debian/0000755000000000000000000000000011750535467007203 5ustar debian/source/0000755000000000000000000000000011750524174010474 5ustar debian/source/format0000644000000000000000000000001411750524174011702 0ustar 3.0 (quilt) debian/source/options0000644000000000000000000000005511750524174012112 0ustar extend-diff-ignore = "(^|/)(scratch|.idea)$" debian/watch0000644000000000000000000000023711750524174010227 0ustar version=3 opts="filenamemangle=s/.*\/(.*)/connectomeviewer-$1\.tar\.gz/" \ http://github.com/LTS5/connectomeviewer/downloads .*tarball/release-([\d\.a-z]+) debian/changelog0000644000000000000000000000104311750524174011044 0ustar connectomeviewer (2.1.0-1) unstable; urgency=low * Namespace transition for Enthought Packages - added python-traits (>= 4) into Build-Depends to not build for older platforms * Flexible direct data loading for various neuroimaging data types * Adjusted debian/copyright to match DEP-5 1.0 -- Stephan Gerhard Thu, 2 Oct 2011 21:30:57 +0200 connectomeviewer (2.0.0-1) unstable; urgency=low * Initial release (Closes: #565431). -- Stephan Gerhard Thu, 6 Jun 2011 21:30:57 +0200 debian/pyversions0000644000000000000000000000000411750524174011332 0ustar 2.6-debian/copyright0000644000000000000000000000404511750524174011132 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: connectomeviewer Upstream-Contact: Stephan Gerhard Source: http://github.com/LTS5/connectomeviewer Files: * Copyright: 2009-2011, Ecole Polytechnique Fédérale de Lausanne (EPFL) and Hospital Center and University of Lausanne (UNIL-CHUV), Switzerland License: BSD-3 Files: ./cviewer/visualization/volume/volume_slicer.py Copyright: 2009, Enthought, Inc. License: BSD-3 License: BSD-3 Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. * Neither the name of the Ecole Polytechnique Fédérale de Lausanne (EPFL) and Hospital Center and University of Lausanne (UNIL-CHUV) nor the names of any contributors may be used to endorse or promote products derived from this software without specific prior written permission. . THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. debian/connectomeviewer.lintian-overrides0000644000000000000000000000027511750524174016134 0ustar # Upstream does not provide a manpage because of rudimentary # command line interface. --help is accessible though connectomeviewer binary: binary-without-manpage *usr/bin/connectomeviewer debian/rules0000755000000000000000000000015411750524174010254 0ustar #!/usr/bin/make -f # -*- makefile -*- %: dh $@ override_dh_auto_clean: dh_auto_clean -rm -rf doc/build debian/docs0000644000000000000000000000001311750524174010041 0ustar README.rst debian/gbp.conf0000644000000000000000000000036311750524174010615 0ustar [DEFAULT] # the default branch for upstream sources: upstream-branch = master # the default branch for the debian patch: debian-branch = debian # the default tag formats used: upstream-tag = release-%(version)s debian-tag = debian/%(version)s debian/blends0000644000000000000000000000062411750524174010370 0ustar Source: connectomeviewer Tasks: debian-med/imaging, debian-science/neuroscience-cognitive Published-Title: The Connectome Viewer Toolkit: An open source framework to manage, analyze, and visualize connectomes Published-Authors: Gerhard S, Daducci A, Lemkaddem A, Meuli R, Thiran J-P and Hagmann P Published-In: Front. Neuroinform. 5:3 Published-Year: 2011 Published-DOI: 10.3389/fninf.2011.00003 debian/control0000644000000000000000000000241311750524174010577 0ustar Source: connectomeviewer Section: python Priority: extra Maintainer: Stephan Gerhard Build-Depends: debhelper (>= 7.2.18), python-all (>= 2.6), python-support, python-numpy (>= 1.3.0), python-setuptools, python-traits (>= 4) Standards-Version: 3.9.2 Homepage: http://www.connectomeviewer.org Vcs-Git: git://github.com/LTS5/connectomeviewer.git Vcs-Browser: http://github.com/LTS5/connectomeviewer Package: connectomeviewer Architecture: all Depends: ${python:Depends}, ${misc:Depends}, python-cfflib (>= 2.0.5), python-networkx (>= 1.4), python-nibabel, python-numpy (>= 1.3.0), python-scipy, python-chaco, mayavi2 (>= 4.0.0), ipython Recommends: python-nipype, python-dipy, python-matplotlib, python-qscintilla2, Suggests: nipy-suite Description: Interactive Analysis and Visualization for MR Connectomics The Connectome Viewer is a extensible, scriptable, pythonic research environment for visualization and (network) analysis in neuroimaging and connectomics. . Employing the Connectome File Format, diverse data types such as networks, surfaces, volumes, tracks and metadata are handled and integrated. The Connectome Viewer is part of the MR Connectome Toolkit. debian/compat0000644000000000000000000000000211750524174010372 0ustar 7