debian/0000755000000000000000000000000012247322312007164 5ustar debian/control0000644000000000000000000000426312247147514010605 0ustar Source: dialign-t Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Section: science Priority: optional Build-Depends: debhelper (>= 9) Standards-Version: 3.9.5 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/dialign-t/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/dialign-t/trunk/ Homepage: http://dialign-tx.gobics.de/ Package: dialign-tx Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends}, dialign-tx-data (= ${source:Version}) Enhances: t-coffee Description: Segment-based multiple sequence alignment DIALIGN-TX is a command line tool to perform multiple alignment of protein or DNA sequences. It is a complete reimplementation of the segment-base approach including several new improvements and heuristics that significantly enhance the quality of the output alignments compared to DIALIGN 2.2 and DIALIGN-T. For pairwise alignment, DIALIGN-TX uses a fragment-chaining algorithm that favours chains of low-scoring local alignments over isolated high-scoring fragments. For multiple alignment, DIALIGN-TX uses an improved greedy procedure that is less sensitive to spurious local sequence similarities. Package: dialign-tx-data Architecture: all Depends: ${misc:Depends} Enhances: dialign-tx Description: Segment-based multiple sequence alignment (data files) DIALIGN-TX is a command line tool to perform multiple alignment of protein or DNA sequences. It is a complete reimplementation of the segment-base approach including several new improvements and heuristics that significantly enhance the quality of the output alignments compared to DIALIGN 2.2 and DIALIGN-T. For pairwise alignment, DIALIGN-TX uses a fragment-chaining algorithm that favours chains of low-scoring local alignments over isolated high-scoring fragments. For multiple alignment, DIALIGN-TX uses an improved greedy procedure that is less sensitive to spurious local sequence similarities. . This package contain the score matrices and probability distribution files that DIALIGN-TX needs to align peptidic and nucleic sequences. debian/dialign-tx.manpages0000644000000000000000000000002412214301051012724 0ustar debian/dialign-tx.1 debian/dialign-tx.1.xml0000644000000000000000000003323412214301051012101 0ustar ]> &dhtitle; &dhpackage; &dhrelease; Amarendran R. Subramanian Author of &dhpackage;
subraman@informatik.uni-tuebingen.de
Volker Menrad Co-author of &dhpackage; Dorothea Emig Co-author of &dhpackage; &dhfirstname; &dhsurname; Converted this guide in DocBook XML for the Debian distribution.
&dhemail;
2004 2005 2006 2007 2008 Amarendran R. Subramanian (DIALIGN-TX) 2004 Volker Menrad (DIALIGN-TX) 2004 Dorothea Emig (DIALIGN-TX) 2007 2008 &dhusername; (This document and its XML source.) DIALIGN-TX is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2.1 of the License, or (at your option) any later version. DIALIGN-TX is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License along with this library; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA On Debian system, a copy of the GNU Lesser General Public License is available in /usr/share/common-licences. This documentation and its XML source file can be used, modified and redistributed under the same terms as DIALIGN-TX itself. &dhucpackage; &dhsection; &dhpackage; Segment-based multiple sequence alignment &dhpackage; conf-directory fasta-file fasta-out-file DESCRIPTION DIALIGN-TX is an improved algorithm for segment-based multiple protein alignments. DIALIGN-TX is a complete reimplementation of the segment-base approach including several new improvements and heuristics that significantly enhance the quality of the output alignments compared to DIALIGN 2.2. This significant superiority has been observed on local as well on global alignment benchmarks. OPTIONS Debug-Mode [DEFAULT 0] 0 no debug statements 1 debugs the current phase of the processing 2 very loquacious debugging 5 hardcore debugging Maximum amount of input sequences [DEFAULT 5000]. Maximum number of characters per line in a FASTA file [DEFAULT 100]. Maximum amount of characters per line when printing a sequence [DEFAULT 80]. sensitivity mode, the higher the level the less likely spurious random fragments are aligned in local alignments [DEFAULT 0] 0 switched off 1 level-1, reduced sensitivity 2 level-2, strongly reduced sensitivity Score matrix file name (in the configuration directory) [DEFAULT PROTEIN: BLOSUM.scr] / [DEFAULT DNA: dna_matrix.scr]. Defines the minimum weight when the weight formula is changed to 1-pow(1-prob, factor) [DEFAULT 0.000000065]. Probability distribution file name (in the configuration directory) [DEFAULT PROTEIN: BLOSUM.diag_prob_t10] / [DEFAULT DNA: dna_diag_prob_100_exp_550000]. Add to each score (to prevent negative values) [DEFAULT 0]. Even threshold for low score for sequences alignment [DEFAULT PROTEIN: 4] / [DEFAULT DNA: 0]. Maximum number of consecutive positions for window containing low scoring positions [DEFAULT PROTEIN: 4] / [DEFAULT DNA: 1]. Global minimum fragment length for stop criterion [DEFAULT PROTEIN: 40] / [DEFAULT DNA: 1]. Minimal allowed average score in frag window containing low scoring positions [DEFAULT PROTEIN: 4.0] / [DEFAULT DNA: 0.9]. Wether overlap weights are calculated or not [DEFAULT 0]. Minimum fragment length [DEFAULT 1]. Threshold weight to consider the fragment at all [DEFAULT 0.0]. [DEFAULT 0] 1: Only use a sqrt(amount_of_seqs) stripe of neighbour sequences to calculate pairwise alignments (increase performance). 0: All pairwise alignments will be calculated. Optional anchor file. [DEFAULT none] Input is DNA-sequence. Translate DNA into aminoacids from begin to end (length will be cut to mod 3 = 0). Do not use with this option (Default values for PROTEIN input will be loaded). Compare only longest Open Reading Frame. Do not use with this option (Default values for PROTEIN input will be loaded). Translate DNA to aminoacids, reading frame for each sequence calculated due to its longest ORF. Do not use with this option (Default values for PROTEIN input will be loaded). Output in aminoacids, no retranslation of DNA sequences [DEFAULT: input = output]. Fast mode (implies -l0, since it already significantly reduces sensitivity). Generate probability table saved in &config-dir;/prob_table and exit. Print this message. FILES &config-dir; This is the default conf-directory that &dhpackage; expects as its first argument, as supplied in the upstream sources. SEE ALSO DIALIGN-TX is a re-implementation of dialign2-21. (See http://dialign.gobics.de/ for more information about DIALIGN2). The website of DIALIGN-TX is http://dialign-tx.gobics.de/ REFERENCES Amarendran R. Subramanian, Michael Kaufmann, Burkhard Morgenstern: DIALIGN-TX: improvement of the segment-based approach for multiple sequence alignment by combining greedy and progressive alignment strategies, Algorithms for Molecular Biology 3:6, 2008. Amarendran R. Subramanian, Jan Weyer-Menkhoff, Michael Kaufmann, Burkhard Morgenstern: DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment. BMC Bioinformatics 2005, 6:66. debian/rules0000755000000000000000000000055212247322140010245 0ustar #!/usr/bin/make -f SRCDIR=$(CURDIR)/source export SSEFLAGS := $(shell if [ `dpkg-architecture -qDEB_BUILD_ARCH` = amd64 -o `dpkg-architecture -qDEB_BUILD_ARCH` = i386 ] ; then echo "-mfpmath=sse -msse -mmmx" ; fi) %: dh $@ --sourcedirectory=$(SRCDIR) --parallel override_dh_fixperms-indep: chmod 644 $(CURDIR)/debian/dialign-tx-data/usr/share/dialign-tx/* debian/dialign-tx-data.install0000644000000000000000000000007612214301051013515 0ustar conf/* usr/share/dialign-tx/ data/* usr/share/dialign-tx/ debian/watch0000644000000000000000000000021112214301051010176 0ustar version=3 #opts="dversionmangle=s/.dfsg.*//" \ http://dialign-tx.gobics.de/download http://dialign-tx.gobics.de/DIALIGN-TX_(.*)\.tar\.gz debian/dialign-tx.10000644000000000000000000001620612214301051011302 0ustar .\" Title: DIALIGN-TX .\" Author: Amarendran R. Subramanian .\" Generator: DocBook XSL Stylesheets v1.73.2 .\" Date: 12/15/2008 .\" Manual: DIALIGN-TX: Parameters .\" Source: dialign-tx 1.0.2 .\" .TH "DIALIGN\-TX" "1" "12/15/2008" "dialign-tx 1.0.2" "DIALIGN-TX: Parameters" .\" disable hyphenation .nh .\" disable justification (adjust text to left margin only) .ad l .SH "NAME" dialign-tx \- Segment-based multiple sequence alignment .SH "SYNOPSIS" .HP 11 \fBdialign\-tx\fR [\fBOPTIONS\fR] {\fIconf\-directory\fR} {\fIfasta\-file\fR} [\fIfasta\-out\-file\fR] .SH "DESCRIPTION" .PP DIALIGN\-TX is an improved algorithm for segment\-based multiple protein alignments\&. DIALIGN\-TX is a complete reimplementation of the segment\-base approach including several new improvements and heuristics that significantly enhance the quality of the output alignments compared to DIALIGN 2\&.2\&. This significant superiority has been observed on local as well on global alignment benchmarks\&. .SH "OPTIONS" .PP \fB\-d\fR .RS 4 Debug\-Mode [DEFAULT 0] .IP "" 4 0 no debug statements .IP "" 4 1 debugs the current phase of the processing .IP "" 4 2 very loquacious debugging .IP "" 4 5 hardcore debugging .RE .PP \fB\-s\fR .RS 4 Maximum amount of input sequences [DEFAULT 5000]\&. .RE .PP \fB\-a\fR .RS 4 Maximum number of characters per line in a FASTA file [DEFAULT 100]\&. .RE .PP \fB\-c\fR .RS 4 Maximum amount of characters per line when printing a sequence [DEFAULT 80]\&. .RE .PP \fB\-l\fR .RS 4 sensitivity mode, the higher the level the less likely spurious random fragments are aligned in local alignments [DEFAULT 0] .IP "" 4 0 switched off .IP "" 4 1 level\-1, reduced sensitivity .IP "" 4 2 level\-2, strongly reduced sensitivity .RE .PP \fB\-m\fR .RS 4 Score matrix file name (in the configuration directory) [DEFAULT PROTEIN: BLOSUM\&.scr] / [DEFAULT DNA: dna_matrix\&.scr]\&. .RE .PP \fB\-w\fR .RS 4 Defines the minimum weight when the weight formula is changed to 1\-pow(1\-prob, factor) [DEFAULT 0\&.000000065]\&. .RE .PP \fB\-p\fR .RS 4 Probability distribution file name (in the configuration directory) [DEFAULT PROTEIN: BLOSUM\&.diag_prob_t10] / [DEFAULT DNA: dna_diag_prob_100_exp_550000]\&. .RE .PP \fB\-v\fR .RS 4 Add to each score (to prevent negative values) [DEFAULT 0]\&. .RE .PP \fB\-t\fR .RS 4 \(lqEven\(rq threshold for low score for sequences alignment [DEFAULT PROTEIN: 4] / [DEFAULT DNA: 0]\&. .RE .PP \fB\-n\fR .RS 4 Maximum number of consecutive positions for window containing low scoring positions [DEFAULT PROTEIN: 4] / [DEFAULT DNA: 1]\&. .RE .PP \fB\-g\fR .RS 4 Global minimum fragment length for stop criterion [DEFAULT PROTEIN: 40] / [DEFAULT DNA: 1]\&. .RE .PP \fB\-m\fR .RS 4 Minimal allowed average score in frag window containing low scoring positions [DEFAULT PROTEIN: 4\&.0] / [DEFAULT DNA: 0\&.9]\&. .RE .PP \fB\-o\fR .RS 4 Wether overlap weights are calculated or not [DEFAULT 0]\&. .RE .PP \fB\-f\fR .RS 4 Minimum fragment length [DEFAULT 1]\&. .RE .PP \fB\-r\fR .RS 4 Threshold weight to consider the fragment at all [DEFAULT 0\&.0]\&. .RE .PP \fB\-u\fR .RS 4 [DEFAULT 0] .IP "" 4 1: Only use a sqrt(amount_of_seqs) stripe of neighbour sequences to calculate pairwise alignments (increase performance)\&. .IP "" 4 0: All pairwise alignments will be calculated\&. .RE .PP \fB\-A\fR .RS 4 Optional anchor file\&. [DEFAULT none] .RE .PP \fB\-D\fR .RS 4 Input is DNA\-sequence\&. .RE .PP \fB\-T\fR .RS 4 Translate DNA into aminoacids from begin to end (length will be cut to mod 3 = 0)\&. .sp .it 1 an-trap .nr an-no-space-flag 1 .nr an-break-flag 1 .br Warning Do not use \fB\-D\fR with this option (Default values for PROTEIN input will be loaded)\&. .RE .PP \fB\-L\fR .RS 4 Compare only longest Open Reading Frame\&. .sp .it 1 an-trap .nr an-no-space-flag 1 .nr an-break-flag 1 .br Warning Do not use \fB\-D\fR with this option (Default values for PROTEIN input will be loaded)\&. .RE .PP \fB\-O\fR .RS 4 Translate DNA to aminoacids, reading frame for each sequence calculated due to its longest ORF\&. .sp .it 1 an-trap .nr an-no-space-flag 1 .nr an-break-flag 1 .br Warning Do not use \fB\-D\fR with this option (Default values for PROTEIN input will be loaded)\&. .RE .PP \fB\-P\fR .RS 4 Output in aminoacids, no retranslation of DNA sequences [DEFAULT: input = output]\&. .RE .PP \fB\-F\fR .RS 4 Fast mode (implies \-l0, since it already significantly reduces sensitivity)\&. .RE .PP \fB\-C\fR .RS 4 Generate probability table saved in /usr/share/dialign\-tx/prob_table and exit\&. .RE .PP \fB\-H\fR, \fB\-h\fR .RS 4 Print this message\&. .RE .SH "FILES" .PP \fI/usr/share/dialign\-tx\fR .RS 4 This is the default conf\-directory that \fBdialign\-tx\fR expects as its first argument, as supplied in the upstream sources\&. .RE .SH "SEE ALSO" .PP DIALIGN\-TX is a re\-implementation of \fBdialign2-2\fR(1)\&. (See http://dialign\&.gobics\&.de/ for more information about DIALIGN2)\&. .PP The website of DIALIGN\-TX is http://dialign\-tx\&.gobics\&.de/ .SH "REFERENCES" .PP Amarendran R\&. Subramanian, Michael Kaufmann, Burkhard Morgenstern: DIALIGN\-TX: improvement of the segment\-based approach for multiple sequence alignment by combining greedy and progressive alignment strategies, Algorithms for Molecular Biology 3:6, 2008\&. .PP Amarendran R\&. Subramanian, Jan Weyer\-Menkhoff, Michael Kaufmann, Burkhard Morgenstern: DIALIGN\-T: An improved algorithm for segment\-based multiple sequence alignment\&. BMC Bioinformatics 2005, 6:66\&. .SH "AUTHORS" .PP \fBAmarendran R\&. Subramanian\fR <\&subraman@informatik\&.uni\-tuebingen\&.de\&> .sp -1n .IP "" 4 Author of dialign\-tx .PP \fBVolker Menrad\fR .sp -1n .IP "" 4 Co\-author of dialign\-tx .PP \fBDorothea Emig\fR .sp -1n .IP "" 4 Co\-author of dialign\-tx .PP \fBCharles Plessy\fR <\&plessy@debian\&.org\&> .sp -1n .IP "" 4 Converted this guide in DocBook XML for the Debian distribution\&. .SH "COPYRIGHT" Copyright \(co 2004, 2005, 2006, 2007, 2008 Amarendran R. Subramanian (DIALIGN-TX) .br Copyright \(co 2004 Volker Menrad (DIALIGN-TX) .br Copyright \(co 2004 Dorothea Emig (DIALIGN-TX) .br Copyright \(co 2007, 2008 Charles Plessy (This document and its XML source.) .br .PP DIALIGN\-TX is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2\&.1 of the License, or (at your option) any later version\&. .PP DIALIGN\-TX is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE\&. See the GNU Lesser General Public License for more details\&. .PP You should have received a copy of the GNU Lesser General Public License along with this library; if not, write to the Free Software Foundation, Inc\&., 51 Franklin St, Fifth Floor, Boston, MA 02110\-1301 USA .PP On Debian system, a copy of the GNU Lesser General Public License is available in \fI/usr/share/common\-licences\fR\&. .PP This documentation and its XML source file can be used, modified and redistributed under the same terms as DIALIGN\-TX itself\&. .sp debian/upstream0000644000000000000000000000114612214301051010740 0ustar Contact: Amarendran R. Subramanian Homepage: http://dialign-tx.gobics.de/ Name: DIALIGN-T Reference: AUTHOR: Subramanian, Amarendran R. and Kaufmann, Michael and Morgenstern, Burkhard TITLE: > DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment JOURNAL: Algorithms for Molecular Biology VOLUME: 3 YEAR: 2008 NUMBER: 1 PAGES: 6 URL: http://www.almob.org/content/3/1/6 DOI: 10.1186/1748-7188-3-6 PMID: 18505568 ISSN: 1748-7188 Watch: http://dialign-tx.gobics.de/download http://dialign-tx.gobics.de/DIALIGN-TX_(.*)\.tar\.gz debian/copyright0000644000000000000000000000270712240700517011125 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: DIALIGN-TX Upstream-Contact: Amarendran R. Subramanian Source: http://dialign-tx.gobics.de/DIALIGN-TX_1.0.2.tar.gz Files: * Copyright: © 2004-2008 Amarendran R. Subramanian © 2004 Volker Menrad © 2004 Dorothea Emig License: LGPL-2.1+ License: LGPL-2.1+ This package is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2.1 of the License, or (at your option) any later version. . This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. . You should have received a copy of the GNU Lesser General Public License along with this package; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA . On Debian systems, the complete text of the GNU Lesser General Public License can be found in `/usr/share/common-licenses/LGPL'. Files: debian/* Copyright: © 2007-2008 Charles Plessy © 2008 David Paleino © 2011-2013 Andreas Tille License: LGPL-2.1+ debian/source/0000755000000000000000000000000011514055761010473 5ustar debian/source/format0000644000000000000000000000001411301174376011677 0ustar 3.0 (quilt) debian/README.Debian0000644000000000000000000000056312214301051011220 0ustar DIALIGN-TX for Debian -------------------- The configuration directory shipped with the source is installed in /usr/share/dialign-tx on your system. Possible issues with this package: - Users have no write acces to /usr/share/dialign-tx, so problems are expected when running dialign-t -C. -- Charles Plessy Fri, 04 Apr 2008 11:23:25 +0900 debian/changelog0000644000000000000000000000621312247321731011044 0ustar dialign-t (1.0.2-5) unstable; urgency=low * enable running "debian/rules build-arch", i.e. without building arch independent packages (thanks to Roland Stigge for the patch) Closes: #731214 -- Andreas Tille Tue, 03 Dec 2013 10:24:51 +0100 dialign-t (1.0.2-4) unstable; urgency=low * Set conditional sse optimising flags Closes: #729652 -- Andreas Tille Mon, 02 Dec 2013 19:10:33 +0100 dialign-t (1.0.2-3) unstable; urgency=low [ Charles Plessy ] * debian/upstream: renamed from upstream-metadata.yaml [ Andreas Tille] * debian/upstream: - Removed duplicate of DOI - Moved PMID to References * debian/control: - cme fix dpkg-control - removed Conflicts/Provides/Replaces: dialign-t,dialign-t-doc since this is not even in oldstable any more - canonical Vcs URLs - debhelper 9 * debian/patches/prevent_enforcing_arch.patch: Do not enforce specific architecture * debian/patches/hardening.patch: Propagate hardening options * debian/copyright: DEP5 -- Andreas Tille Wed, 13 Nov 2013 14:12:59 +0100 dialign-t (1.0.2-2) unstable; urgency=low [ Charles Plessy ] * Documented information in ‘debian/upstream-metadata.yaml’. * Removed mention of the bibliographic reference in ‘debian/control’. [ Andreas Tille ] * Added myself to uploaders * Standards-Version: 3.9.1 (no changes needed) * debian/source/format: 3.0 (quilt) -- Andreas Tille Fri, 14 Jan 2011 15:20:54 +0100 dialign-t (1.0.2-1) unstable; urgency=low * New upstream release: - Fixes memory handling with anchor points. - New option: -A optional anchor file [DEFAULT none] * debian/dialign-tx.1*: documented the -A option. * debian/co{mpat,trol}: using Debhelper 7. -- Charles Plessy Mon, 15 Dec 2008 14:12:59 +0900 dialign-t (1.0.1-2) unstable; urgency=low * debian/control: - dialign-tx-data recommends dialign-tx, not dialign-t. - Checked conformance with Policy 3.8.0 (no changes needed). -- Charles Plessy Sat, 21 Jun 2008 13:29:00 +0900 dialign-t (1.0.1-1) unstable; urgency=low * New upstream release updating bibliographic reference. * debian/copyright: cosmetic changes. * debian/dialign.1*: - Converted DiAlign to DIALIGN; - updated reference; - incremented copyright year and version number. * debian/control: updated reference. -- Charles Plessy Tue, 03 Jun 2008 19:58:50 +0900 dialign-t (1.0.0-1) unstable; urgency=low [ David Paleino ] * Updated to Standards-Version 3.7.3 (no changes needed) [ Charles Plessy ] * New upstream version, renamed DIALIGN-TX. * debian/control: Enhances: t-coffee. * debian/copyright: - Converted to machine-readable format. - Updated relevant copyrights for 2008. * Updated my email address. -- Charles Plessy Sat, 03 May 2008 11:16:37 +0900 dialign-t (0.2.2.dfsg-1) unstable; urgency=low * Removed upstream documentation. * Initial release (Closes: #445983) -- Charles Plessy Mon, 19 Nov 2007 23:45:20 +0900 debian/patches/0000755000000000000000000000000012247147306010623 5ustar debian/patches/prevent_enforcing_arch.patch0000644000000000000000000000111512247147306016354 0ustar Author: Andreas Tille Last-Update: Mon, 02 Dec 2013 19:10:33 +0100 Bug-Debian: http://bugs.debian.org/729652 Description: Do not enforce i686 architecture Also do not enforce sse except if $(SSEFLAGS) is set properly --- a/source/Makefile +++ b/source/Makefile @@ -8,7 +8,7 @@ CC=gcc # THIS IS FOR THE OPTIMIZED ONE #CPPFLAGS=-g #CPPFLAGS=-O3 -march=i686 -funroll-loops -CPPFLAGS=-O3 -funroll-loops -march=i686 -mfpmath=sse -msse -mmmx +CPPFLAGS=-O3 -funroll-loops $(SSEFLAGS) #CPPFLAGS=-march=athlon-mp -g -O0 -Wall -D_USE_XOPEN -D__unix__ OBJ_DIR=. debian/patches/hardening.patch0000644000000000000000000000052212240700135013566 0ustar Author: Andreas Tille LastChanged: Wed, 13 Nov 2013 14:12:59 +0100 Description: Propagate hardening options --- a/source/Makefile +++ b/source/Makefile @@ -35,5 +35,5 @@ museq: $(OBJ) rm -f $(TARGET)/$@ $(CC) -o $(TARGET)/$@ \ $(OBJ) \ - -pipe -Wall -lm + -pipe -Wall -lm $(LDFLAGS) mv museq dialign-tx debian/patches/series0000644000000000000000000000005512240677753012047 0ustar prevent_enforcing_arch.patch hardening.patch debian/compat0000644000000000000000000000000212240675611010370 0ustar 9 debian/dialign-tx.install0000644000000000000000000000003212214301051012576 0ustar source/dialign-tx usr/bin