pax_global_header00006660000000000000000000000064145604740740014525gustar00rootroot0000000000000052 comment=c3e540d2c55239fbbd42db5aa4c82ff3ed4b43db geneagrapher-core-0.1.3/000077500000000000000000000000001456047407400151045ustar00rootroot00000000000000geneagrapher-core-0.1.3/.github/000077500000000000000000000000001456047407400164445ustar00rootroot00000000000000geneagrapher-core-0.1.3/.github/workflows/000077500000000000000000000000001456047407400205015ustar00rootroot00000000000000geneagrapher-core-0.1.3/.github/workflows/ci.yaml000066400000000000000000000013471456047407400217650ustar00rootroot00000000000000name: CI on: [push] jobs: checks: name: CI runs-on: ubuntu-latest strategy: matrix: python-version: ["3.11"] steps: - uses: actions/checkout@v4 - name: Set up Python ${{ matrix.python-version }} uses: actions/setup-python@v5 with: python-version: ${{ matrix.python-version }} - name: Install dependencies run: | python -m pip install --upgrade pip pip install poetry poetry install - name: Black run: | make format-check - name: Lint run: | make flake8 - name: Type hint enforcement run: | make mypy - name: Test run: | make test geneagrapher-core-0.1.3/.github/workflows/live-tests.yaml000066400000000000000000000011451456047407400234650ustar00rootroot00000000000000name: Live Tests on: schedule: - cron: "9 9 * * *" jobs: live_tests: name: Live Tests runs-on: ubuntu-latest strategy: matrix: python-version: ["3.11"] steps: - uses: actions/checkout@v4 - name: Set up Python ${{ matrix.python-version }} uses: actions/setup-python@v5 with: python-version: ${{ matrix.python-version }} - name: Install dependencies run: | python -m pip install --upgrade pip pip install poetry poetry install - name: Live tests run: | make test-live geneagrapher-core-0.1.3/.gitignore000066400000000000000000000001071456047407400170720ustar00rootroot00000000000000dist .projectile .python-version __pycache__ docs/_build .DS_Store geneagrapher-core-0.1.3/.readthedocs.yaml000066400000000000000000000014431456047407400203350ustar00rootroot00000000000000# .readthedocs.yaml # Read the Docs configuration file # See https://docs.readthedocs.io/en/stable/config-file/v2.html for details # Required version: 2 # Set the version of Python and other tools you might need build: os: ubuntu-22.04 tools: python: "3.11" jobs: post_create_environment: # Install poetry # https://python-poetry.org/docs/#installing-manually - pip install poetry # Tell poetry to not use a virtual environment - poetry config virtualenvs.create false post_install: # Install dependencies with 'docs' dependency group # https://python-poetry.org/docs/managing-dependencies/#dependency-groups - poetry install --with docs # Build documentation in the docs/ directory with Sphinx sphinx: configuration: docs/conf.py geneagrapher-core-0.1.3/CHANGELOG.md000066400000000000000000000027201456047407400167160ustar00rootroot00000000000000# 0.1.3 Released 06-Feb-2024 - Update aiohttp to resolve Dependabot alerts. # 0.1.2 Released 26-Jan-2024 - Update dependency versions to resolve Dependabot alerts. - Update GitHub Actions workflow dependencies to use Node 20. # 0.1.1 Released 22-May-2023 - Extract promotors and co-promotors as advisors (#2). # 0.1.0 Released 07-Apr-2023 This is the first release of geneagrapher-core. Much of the functionality of this package comes from [Geneagrapher](https://github.com/davidalber/geneagrapher), which until now was responsible for retrieving mathematician records directly from the Math Genealogy Project. This package now owns that responsibility. The main features of this release are: - Functions to support the retrieval of single records or to build entire graphs. - Arguments to provide callback functions that will receive information during a graph-building process. - Online documentation to make it easier for others to use this package for retrieving records or building graphs. - Support for general caching schemes. Additionally, this release modernizes the coding standards and tools used. Much of the Geneagrapher code this replaces was written in 2008. More recent updates were made in 2011 and 2018, but much has changed with Python and development tools during that time. This release adds type hints, updated and more modern testing, linting, and a continuous integration process. Of course, this release also targets Python 3, instead of Python 2. geneagrapher-core-0.1.3/LICENSE.md000066400000000000000000000020541456047407400165110ustar00rootroot00000000000000MIT License Copyright (c) 2023 David Alber Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. geneagrapher-core-0.1.3/Makefile000066400000000000000000000010541456047407400165440ustar00rootroot00000000000000.PHONY: format flake8 mypy test check: format-check flake8 mypy test # Code formatting format_targets := geneagrapher_core docs examples tests format: poetry run black $(format_targets) fmt: format black: format format-check: poetry run black --check $(format_targets) # Linting flake8: poetry run flake8 flake: flake8 lint: flake8 # Type enforcement mypy: poetry run mypy --strict geneagrapher_core tests types: mypy # Tests test: poetry run pytest -m "not live" tests test-live: poetry run pytest -m "live" tests all: clean: rm -rf dist geneagrapher-core-0.1.3/README.md000066400000000000000000000061071456047407400163670ustar00rootroot00000000000000# geneagrapher-core [![Continuous Integration Status](https://github.com/davidalber/geneagrapher-core/actions/workflows/ci.yaml/badge.svg?branch=main)](https://github.com/davidalber/geneagrapher-core/actions/workflows/ci.yaml/badge.svg?branch=main) [![Live Tests Status](https://github.com/davidalber/geneagrapher-core/actions/workflows/live-tests.yaml/badge.svg?branch=main)](https://github.com/davidalber/geneagrapher-core/actions/workflows/live-tests.yaml/badge.svg?branch=main) [![Documentation Status](https://readthedocs.org/projects/geneagrapher-core/badge/?version=latest)](https://geneagrapher-core.readthedocs.io/en/latest/?badge=latest) ## Overview Geneagrapher is a tool for extracting information from the [Mathematics Genealogy Project](https://www.mathgenealogy.org/) to form a math family tree, where connections are between advisors and their students. This package contains the core data-grabbing and manipulation functions needed to build a math family tree. The functionality here is low level and intended to support the development of other tools. If you just want to build a geneagraph, take a look at [Geneagrapher](https://github.com/davidalber/geneagrapher). If you want to get mathematician records and use them in code, then this project may be useful to you. ## Documentation Documentation about how to call into this package's functions can be found at http://geneagrapher-core.readthedocs.io/. ## Development Dependencies in this package are managed by [Poetry](https://python-poetry.org/). Thus, your Python environment will need Poetry installed. Install all dependencies with: ```sh $ poetry install ``` Several development commands are runnable with `make`: - `make fmt` (also `make black` and `make format`) formats code using black - `make format-check` runs black and reports if the code passes formatting checks without making changes - `make lint` (also `make flake8` and `make flake`) does linting - `make mypy` (also `make types`) checks the code for typing violations - `make test` runs automated tests - `make check` does code formatting (checking, not modifying), linting, type checking, and testing in one command; if this command does not pass, CI will not pass ## Releasing New Versions 1. Increase the version in pyproject.toml (e.g., [ed80c2c](https://github.com/davidalber/geneagrapher-core/commit/ed80c2c568605f0eab3c3b8a9bf9d7d14aaf1495)). 1. Add an entry for the new version in CHANGELOG.md (e.g., [bf2931a](https://github.com/davidalber/geneagrapher-core/commit/bf2931a2b602c692cf690dd55b0809489c457e7c)). 1. Push changes. 1. Tag the new version with message "Release VERSION". ```bash $ git tag -s vVERSION COMMIT_SHA ``` 1. Push the tag. ```bash $ git push origin vVERSION ``` 1. Build the distribution. ```bash $ poetry build ``` 1. Publish release to Test PyPI (this assumes that Poetry has been configured with the Test PyPI URL). ```bash $ poetry publish -r testpypi ``` 1. Publish release to PyPI. ```bash $ poetry publish ``` 1. Create [new release](https://github.com/davidalber/geneagrapher-core/releases/new). geneagrapher-core-0.1.3/docs/000077500000000000000000000000001456047407400160345ustar00rootroot00000000000000geneagrapher-core-0.1.3/docs/Makefile000066400000000000000000000011721456047407400174750ustar00rootroot00000000000000# Minimal makefile for Sphinx documentation # # You can set these variables from the command line, and also # from the environment for the first two. SPHINXOPTS ?= SPHINXBUILD ?= sphinx-build SOURCEDIR = . BUILDDIR = _build # Put it first so that "make" without argument is like "make help". help: @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) .PHONY: help Makefile # Catch-all target: route all unknown targets to Sphinx using the new # "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). %: Makefile @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) geneagrapher-core-0.1.3/docs/build-graph.rst000066400000000000000000000066671456047407400210030ustar00rootroot00000000000000############################## Getting All Records in a Graph ############################## .. currentmodule:: geneagrapher_core.traverse Get all records in a graph using the :func:`build_graph ` function. .. autofunction:: build_graph Related types ============= .. autoclass:: TraverseItem :members: :undoc-members: :member-order: bysource .. autoclass:: TraverseDirection() :members: :undoc-members: :member-order: bysource .. autoclass:: Geneagraph :members: :undoc-members: :member-order: bysource Callbacks ========= Report callback --------------- The :func:`build_graph ` function optionally takes a reporting callback function. If provided, this function will be called when new records are added to the traversal plan or when records have been retrieved. The ``report_callback`` function is called with: - An :class:`asyncio.TaskGroup`, which is useful if you want to do something expensive in the reporting callback and do not want to block the graph-building path. - Three integers that report: 1. The number of known records yet to be retrieved. 2. The number of records in the process of being retrieved. 3. The number of records that have been retrieved. Examples ^^^^^^^^ Here's an example of a simple, blocking callback:: async def show_progress( tg: asyncio.TaskGroup, to_fetch: int, fetching: int, fetched: int ) -> None: print(f"Todo: {to_fetch} Doing: {fetching} Done: {fetched}") Here's a more complicated example where you might want to create a new task to complete the reporting. Doing so keeps the reporting callback from blocking progress on data retrieval. .. code-block:: async def do_expensive_network_request( to_fetch: int, fetching: int, fetched: int ) -> None: # Do something that takes a long time. async def show_progress( tg: asyncio.TaskGroup, to_fetch: int, fetching: int, fetched: int ) -> None: tg.create_task(do_expensive_network_request(to_fetch, fetching, fetched)) Record callback --------------- The :func:`build_graph ` function optionally takes a record callback function. If provided, this function will be called when a record has been retrieved. The callback function receives the record data as an argument. The ``record_callback`` function is called with: - An :class:`asyncio.TaskGroup`, which is useful if you want to do something expensive in the reporting callback and do not want to block the graph-building path. - A :class:`Record ` object containing the record data. Examples ^^^^^^^^ Here's an example of a simple, blocking callback:: async def got_record(tg: asyncio.TaskGroup, record: Record) -> None: print(record) Here's a more complicated example where you might want to create a new task. Doing so keeps the record callback from blocking progress on data retrieval. .. code-block:: async def do_expensive_network_request(record: Record) -> None: # Do something that takes a long time. async def got_record(tg: asyncio.TaskGroup, record: Record) -> None: tg.create_task(do_expensive_network_request(record)) Example Code ============ An example of how to use the ``cache`` and ``report_callback`` arguments to :func:`build_graph ` is in the repository's `examples directory `_. geneagrapher-core-0.1.3/docs/conf.py000066400000000000000000000024141456047407400173340ustar00rootroot00000000000000# Configuration file for the Sphinx documentation builder. # # For the full list of built-in configuration values, see the documentation: # https://www.sphinx-doc.org/en/master/usage/configuration.html import sys import os sys.path.insert(0, os.path.abspath("..")) # -- Project information ----------------------------------------------------- # https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information project = "geneagrapher-core" copyright = "2023, David Alber" author = "David Alber" release = "0.1.0" # -- General configuration --------------------------------------------------- # https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration extensions = [ "sphinx.ext.autodoc", "sphinx_autodoc_typehints", "sphinx_rtd_theme", "sphinx.ext.intersphinx", ] templates_path = ["_templates"] exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"] intersphinx_mapping = { "aiohttp": ("https://docs.aiohttp.org/en/stable/", None), "python": ("https://docs.python.org/3", None), } # -- Options for HTML output ------------------------------------------------- # https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output html_theme = "sphinx_rtd_theme" html_static_path = ["_static"] geneagrapher-core-0.1.3/docs/get-one-record.rst000066400000000000000000000013301456047407400213750ustar00rootroot00000000000000################### Get a Single Record ################### .. currentmodule:: geneagrapher_core.record To get a single record, use the :func:`get_record ` function. If you are requesting many records, consider using :func:`get_record_inner `, which allows you to reuse an :class:`aiohttp.ClientSession` and optionally pass a :class:`asyncio.Semaphore` to cap maximum HTTP request concurrency. .. autofunction:: get_record .. autofunction:: get_record_inner Related types ============= .. autoclass:: Record :members: :undoc-members: :member-order: bysource .. autoclass:: Cache() :members: .. autoclass:: CacheResult() :members: :undoc-members: :member-order: bysource geneagrapher-core-0.1.3/docs/index.rst000066400000000000000000000030071456047407400176750ustar00rootroot00000000000000################# geneagrapher-core ################# .. toctree:: :maxdepth: 2 :hidden: get-one-record build-graph Description =========== Geneagrapher is a tool for extracting information from the `Mathematics Genealogy Project `_ to form a math family tree, where connections are between advisors and their students. This package contains the core data-grabbing and manipulation functions needed to build a math family tree. The functionality here is low level and intended to support the development of other tools. If you just want to build a geneagraph, take a look at `Geneagrapher `_. If you want to get mathematician records and use them in code, then this project may be useful to you. Overview ======== This package uses :mod:`asyncio` to concurrently retrieve records. In order to use the package, your code will need to call it from within an event loop. The package provides two main features: - Functions to get single records. These functions are described in :doc:`get-one-record`. - A function that will return all data for a tree that begins with specified records. This function is described in :doc:`build-graph`. Questions and Issues ==================== If the documentation is unclear, please reach out with questions. Likewise, if you encounter issues with the package, please report them. In both cases, the best way to do this is to file an issue `here `_. geneagrapher-core-0.1.3/examples/000077500000000000000000000000001456047407400167225ustar00rootroot00000000000000geneagrapher-core-0.1.3/examples/cache_driver.py000066400000000000000000000053641456047407400217220ustar00rootroot00000000000000"""This example demonstrates a simple cache using Redis. In order to run this, you will need to install the redis package into your Python environment and run a Redis instance on your development machine. You can accomplish this by doing `poetry install --with examples`. A couple notes: 1. This example does not specify any TTLs for data that is cached. A more complete implementation probably should do that. 2. This example does not take any command-line arguments to control the graph that is being built. It simply hardcodes a starting record ID. A general driver would want to accept the starting record IDs as input. Running: ``` $ poetry run python cache_driver.py # If you want to see nicer output and have jq installed. $ poetry run python cache_driver.py | jq # If you want to see the progress bar either redirect output to a file # or /dev/null. $ poetry run python cache_driver.py > /dev/null ``` """ from geneagrapher_core.record import CacheResult, Record, RecordId from geneagrapher_core.traverse import TraverseDirection, TraverseItem, build_graph import asyncio import json import redis.asyncio as redis import sys from typing import Optional, Tuple class RedisCache: def __init__(self): self.r = redis.Redis(host="localhost", port=6379, db=0) def key(self, id: RecordId): return f"ggrapher::{id}" async def get(self, id: RecordId) -> Tuple[CacheResult, Optional[Record]]: val = await self.r.get(self.key(id)) if val is None: # Miss return (CacheResult.MISS, None) elif val == {}: # A null-value hit return (CacheResult.HIT, None) else: # General hit return (CacheResult.HIT, json.loads(val)) async def set(self, id: RecordId, value: Optional[Record]) -> None: val = {} if value is None else value await self.r.set(self.key(id), json.dumps(val)) def display_progress(queued, doing, done): prefix = "Progress: " size = 60 count = queued + doing + done x = int(size * done / count) y = int(size * doing / count) print( f"{prefix}[{u'█'*x}{u':'*y}{('.'*(size - x - y))}] {done}/{count}", end="\r", file=sys.stderr, flush=True, ) async def get_progress( tg: asyncio.TaskGroup, to_fetch: int, fetching: int, fetched: int ) -> None: display_progress(to_fetch, fetching, fetched) if __name__ == "__main__": cache = RedisCache() ggraph = asyncio.run( build_graph( [TraverseItem(RecordId(18231), TraverseDirection.ADVISORS)], cache=cache, report_callback=get_progress, ) ) print(file=sys.stderr) # this adds a newline to the progress bar print(json.dumps(ggraph)) geneagrapher-core-0.1.3/geneagrapher_core/000077500000000000000000000000001456047407400205445ustar00rootroot00000000000000geneagrapher-core-0.1.3/geneagrapher_core/__init__.py000066400000000000000000000000001456047407400226430ustar00rootroot00000000000000geneagrapher-core-0.1.3/geneagrapher_core/py.typed000066400000000000000000000000001456047407400222310ustar00rootroot00000000000000geneagrapher-core-0.1.3/geneagrapher_core/record.py000066400000000000000000000152051456047407400223770ustar00rootroot00000000000000from aiohttp import ClientSession import asyncio from bs4 import BeautifulSoup, Tag from contextlib import asynccontextmanager from enum import Enum, auto import re from typing import AsyncIterator, List, NewType, Optional, Protocol, Tuple, TypedDict RecordId = NewType("RecordId", int) class Record(TypedDict): id: RecordId name: str institution: Optional[str] year: Optional[int] descendants: List[int] advisors: List[int] class CacheResult(Enum): HIT = auto() MISS = auto() class Cache(Protocol): """This defines an interface that passed-in cache objects must implement.""" async def get(self, id: RecordId) -> Tuple[CacheResult, Optional[Record]]: """Get a record from the cache. :param id: Math Genealogy Project ID of the record to retrieve """ ... async def set(self, id: RecordId, value: Optional[Record]) -> None: """Store a record in the cache. :param id: Math Genealogy Project ID of the record to store :param value: the value to store """ ... @asynccontextmanager async def fake_semaphore() -> AsyncIterator[None]: """If the caller to the `get_record*` functions below does not pass a semaphore, this async context manager, which does nothing, is used instead. """ yield None def has_record(soup: BeautifulSoup) -> bool: """Return True if the input tree contains a mathematician record and False otherwise. """ if soup.string == "Non-numeric id supplied. Aborting.": # This is received, for instance, by going to # https://www.mathgenealogy.org/id.php?id=9999999999999999999999999. return False return ( soup.p is not None and soup.p.string != "You have specified an ID that does not exist in the database. Please back \ up and try again." ) async def get_record( record_id: RecordId, cache: Optional[Cache] = None, ) -> Optional[Record]: """Get a single record. This is meant to be called for one-off requests. If the calling code is planning to get several records during its lifetime, it should instantiate a :class:`aiohttp.ClientSession` object as ``ClientSession("https://www.mathgenealogy.org")`` and call :func:`get_record_inner ` instead. :param record_id: Math Genealogy Project ID of the record to retrieve :param cache: a cache object for getting and storing results **Example**:: record = await get_record(RecordId(18231)) """ async with ClientSession("https://www.mathgenealogy.org") as client: return await get_record_inner(record_id, client, cache=cache) async def get_record_inner( record_id: RecordId, client: ClientSession, http_semaphore: Optional[asyncio.Semaphore] = None, cache: Optional[Cache] = None, ) -> Optional[Record]: """Get a single record using the provided :class:`aiohttp.ClientSession` and :class:`asyncio.Semaphore` objects. This is useful when making several record requests. :param record_id: Math Genealogy Project ID of the record to retrieve :param client: a client session object with which to make HTTP requests :param http_semaphore: a semaphore to limit HTTP request concurrency :param cache: a cache object for getting and storing results """ if cache: (status, record) = await cache.get(record_id) if status is CacheResult.HIT: return record async with http_semaphore or fake_semaphore(): soup: BeautifulSoup = await fetch_document(record_id, client) if not has_record(soup): record = None else: record = { "id": record_id, "name": get_name(soup), "institution": get_institution(soup), "year": get_year(soup), "descendants": get_descendants(soup), "advisors": get_advisors(soup), } if cache: await cache.set(record_id, record) return record async def fetch_document(rid: RecordId, client: ClientSession) -> BeautifulSoup: async with client.get(f"/id.php?id={rid}") as resp: return BeautifulSoup(await resp.text(), "html.parser") def get_name(soup: BeautifulSoup) -> str: """Extract the mathematician name.""" el = soup.find("h2") name = el.get_text(strip=True) if el is not None else "" return re.sub(" {2,}", " ", name) # remove redundant whitespace def get_institution(soup: BeautifulSoup) -> Optional[str]: """Return institution name (or None, if there is no institution name).""" for inst in soup.find_all( "div", style="line-height: 30px; text-align: center; margin-bottom: 1ex" ): try: institution: str = inst.find("span").find("span").text if institution != "": return institution except AttributeError: pass return None def get_year(soup: BeautifulSoup) -> Optional[int]: """Return graduation year (or None, if there is no graduation year). Rarely, a record has multiple years listed (e.g., https://www.mathgenealogy.org/id.php?id=131575). In this case, return the first year in the record. """ for inst_year in soup.find_all( "div", style="line-height: 30px; text-align: center; margin-bottom: 1ex" ): try: year = inst_year.find("span").contents[-1].strip() if year != "": year = year.split(",")[ # this addresses records with multiple years 0 ].strip() if year.isdigit(): return int(year) except AttributeError: pass return None def extract_id(tag: Tag) -> int: """Extract the ID from a tag with form .""" return int(tag.attrs["href"].split("=")[-1]) def get_descendants(soup: BeautifulSoup) -> List[int]: """Return the list of descendants.""" table = soup.find("table") if isinstance(table, Tag): return [extract_id(info) for info in table.find_all("a")] else: return [] def get_advisors(soup: BeautifulSoup) -> List[int]: """Return the set of advisors. Rarely: - A record has multiple groups of advisors (e.g., https://www.mathgenealogy.org/id.php?id=17864). In this case, capture all of the advisors from all groups. - A record has promotors and co-promotors (e.g., https://www.mathgenealogy.org/id.php?id=51506). Capture promotors and co-promotors as advisors. """ return [ extract_id(info.find_next()) for info in soup.find_all(string=re.compile("(Advisor|Promotor)")) if "Advisor: Unknown" not in info ] geneagrapher-core-0.1.3/geneagrapher_core/traverse.py000066400000000000000000000214021456047407400227500ustar00rootroot00000000000000from geneagrapher_core.record import ( Cache, Record, RecordId, get_record_inner, ) from aiohttp import ClientSession import asyncio from enum import Flag, auto import functools from typing import Awaitable, Callable, List, Literal, NamedTuple, Optional, TypedDict class Geneagraph(TypedDict): start_nodes: List[RecordId] nodes: dict[RecordId, Record] status: Literal["complete", "truncated"] class TraverseDirection(Flag): """A flag that specifies the traversal direction for a node. This is a :class:`enum.Flag`, so attributes can be combined (e.g., ``ADVISORS | DESCENDANTS``). """ ADVISORS = auto() DESCENDANTS = auto() class TraverseItem(NamedTuple): id: RecordId traverse_direction: TraverseDirection class MaxRecordsException(Exception): pass class LifecycleTracking: """This class is used to track the state of records during the graph-building process. """ PROCESSING_OVERAGE_BUFFER = 10 def __init__( self, start_items: List[TraverseItem], max_records: Optional[int], report_callback: Optional[Callable[[int, int, int], Awaitable[None]]] = None, ): self.todo: dict[RecordId, TraverseItem] = {ti.id: ti for ti in start_items} self.doing: dict[RecordId, TraverseItem] = {} self.done: set[RecordId] = set() self.max_records = max_records self._report_callback = report_callback self.num_records_received = 0 self.finished_record_event = asyncio.Event() @property def all_done(self) -> bool: return bool(self.num_todo == len(self.doing) == 0) @property def num_todo(self) -> int: return len(self.todo) @property def num_doing(self) -> int: return len(self.doing) @property def potential_fetched_records(self) -> int: return self.num_doing + self.num_records_received async def purge_todo(self) -> None: self.todo.clear() await self.report_back() async def create(self, id: RecordId, direction: TraverseDirection) -> None: """Add the node to the `todo` set if it is not in todo, doing, or done already. """ if not (id in self.todo or id in self.doing or id in self.done): self.todo[id] = TraverseItem(id, direction) await self.report_back() async def start_next(self) -> TraverseItem: """Get a record ID from the `todo` set, add it to the `doing` set, and call the `report_back` callback function. """ (id, item) = self.todo.popitem() self.doing[id] = item await self.report_back() return item async def finish(self, id: RecordId, got_record: bool) -> None: """Move a record ID from the `doing` set to the `done` set and call the `report_back` callback function. Record if a record was received. """ self.doing.pop(id) self.done.add(id) if got_record: self.num_records_received += 1 self.finished_record_event.set() await self.report_back() async def process_another(self) -> None: """Limit the number of records being requested to an amount slightly more than the maximum number of records. This avoids situations where hundreds or thousands of additional records are being processed when the maximum number of records has been reached. """ if self.max_records is not None: while ( self.potential_fetched_records >= self.max_records + LifecycleTracking.PROCESSING_OVERAGE_BUFFER ): # If max_records has been reached, raise an exception. if self.num_records_received >= self.max_records: raise MaxRecordsException() # Wait until another fetch operation has finished. self.finished_record_event.clear() await self.finished_record_event.wait() async def report_back(self) -> None: """Call the reporting callback function that was optionally provided during initialization. """ if self._report_callback is not None: await self._report_callback(self.num_todo, len(self.doing), len(self.done)) async def build_graph( start_items: List[TraverseItem], *, http_semaphore: Optional[asyncio.Semaphore] = None, max_records: Optional[int] = None, user_agent: Optional[str] = None, cache: Optional[Cache] = None, record_callback: Optional[ Callable[[asyncio.TaskGroup, Record], Awaitable[None]] ] = None, report_callback: Optional[ Callable[[asyncio.TaskGroup, int, int, int], Awaitable[None]] ] = None, ) -> Geneagraph: """Build a complete geneagraph using the ``start_nodes`` as the graph's leaf nodes. :param start_items: a list of nodes and direction from which to traverse from them :param http_semaphore: a semaphore to limit HTTP request concurrency :param max_records: the maximum number of records to include in the built graph :param user_agent: a custom user agent string to use in HTTP requests :param cache: a cache object for getting and storing results :param record_callback: callback function called with record data as it is retrieved :param report_callback: callback function called to report graph-building progress **Example**:: # Build a graph that contains Carl Friedrich Gauß (18231), his advisor tree, # Johann Friedrich Pfaff (18230), his advisor tree, and his descendant tree. start_items = [ TraverseItem(RecordId(18231), TraverseDirection.ADVISORS), TraverseItem( RecordId(18230), TraverseDirection.ADVISORS | TraverseDirection.DESCENDANTS ), ] graph = await build_graph(start_items) """ ggraph: Geneagraph = { "start_nodes": [n.id for n in start_items], "nodes": {}, "status": "complete", } continue_event = asyncio.Event() def below_max_records() -> bool: return max_records is None or len(ggraph["nodes"]) < max_records async def add_neighbor_work( record: Record, traverse_direction: TraverseDirection ) -> None: key: Literal["advisors", "descendants"] = ( "advisors" if traverse_direction is TraverseDirection.ADVISORS else "descendants" ) for id in record[key]: await tracking.create(RecordId(id), traverse_direction) if tracking.num_todo > 0: # New work was added to the todo queue. Signal the # loop below. continue_event.set() async def fetch_and_process( item: TraverseItem, client: ClientSession, cache: Optional[Cache] ) -> None: record = await get_record_inner(item.id, client, http_semaphore, cache) await tracking.finish(item.id, record is not None) if record is not None: if below_max_records(): ggraph["nodes"][item.id] = record if record_callback is not None: await record_callback(tg, record) for td in (TraverseDirection.ADVISORS, TraverseDirection.DESCENDANTS): if td in item.traverse_direction: await add_neighbor_work(record, td) else: # The graph is now as large as it is allowed to be. ggraph["status"] = "truncated" if tracking.all_done: # There's no more work to do. Signal the loop below. continue_event.set() headers = None if user_agent is None else {"User-Agent": user_agent} async with ClientSession( "https://www.mathgenealogy.org", headers=headers ) as client: async with asyncio.TaskGroup() as tg: tracking = LifecycleTracking( start_items, max_records, None if report_callback is None else functools.partial(report_callback, tg), ) while tracking.num_todo > 0: try: await tracking.process_another() except MaxRecordsException: # We're done. await tracking.purge_todo() break item = await tracking.start_next() # Create a task to fetch and process the record. tg.create_task(fetch_and_process(item, client, cache)) if tracking.num_todo == 0: # There's nothing left to do for now. Wait for # something to happen. continue_event.clear() await continue_event.wait() return ggraph geneagrapher-core-0.1.3/poetry.lock000066400000000000000000003254761456047407400173210ustar00rootroot00000000000000# This file is automatically @generated by Poetry and should not be changed by hand. 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[tool.poetry.group.dev.dependencies] black = "^22.12.0" pytest = "^7.2.1" mypy = "^0.991" flake8 = "^6.0.0" pytest-asyncio = "^0.20.3" [tool.poetry.group.examples] optional = true [tool.poetry.group.examples.dependencies] redis = "^4.6.0" [tool.poetry.group.docs.dependencies] sphinx = "^6.1.3" sphinx-autodoc-typehints = "^1.22" sphinx-rtd-theme = "^1.2.0" [build-system] requires = ["poetry-core"] build-backend = "poetry.core.masonry.api" [tool.pytest.ini_options] markers = [ "live: tests that request live data from the Math Genealogy Project", ] geneagrapher-core-0.1.3/setup.cfg000066400000000000000000000003511456047407400167240ustar00rootroot00000000000000[flake8] # These configuration changes were made to make flake8 and black # agree. See # https://black.readthedocs.io/en/stable/guides/using_black_with_other_tools.html#flake8 # for details. max-line-length = 88 extend-ignore = E203 geneagrapher-core-0.1.3/tests/000077500000000000000000000000001456047407400162465ustar00rootroot00000000000000geneagrapher-core-0.1.3/tests/__init__.py000066400000000000000000000000001456047407400203450ustar00rootroot00000000000000geneagrapher-core-0.1.3/tests/conftest.py000066400000000000000000000012341456047407400204450ustar00rootroot00000000000000from bs4 import BeautifulSoup import os import tomllib from typing import Any, Tuple CURR_DIR = os.path.dirname(os.path.abspath(__file__)) RECORD_TESTDATA_DIR = os.path.join(CURR_DIR, "testdata_records") def load_toml(filename: str) -> dict[str, Any]: with open(filename, "rb") as f: return tomllib.load(f) def load_soup(filename: str) -> BeautifulSoup: with open(filename, "r") as f: return BeautifulSoup(f, "html.parser") def load_record_test(record_id: str) -> Tuple[BeautifulSoup, dict[str, Any]]: path_stub = os.path.join(RECORD_TESTDATA_DIR, record_id) return load_soup(f"{path_stub}.html"), load_toml(f"{path_stub}.toml") geneagrapher-core-0.1.3/tests/test_live.py000066400000000000000000000012741456047407400206220ustar00rootroot00000000000000"""This file contains tests that request pages from the Math Genealogy Project (as opposed to only using stored test data). """ from geneagrapher_core.record import RecordId, get_record from .conftest import load_record_test import pytest @pytest.mark.asyncio @pytest.mark.live @pytest.mark.parametrize("record_id", (18231,)) async def test_still_works(record_id: int) -> None: """Compare the computed record for a given `record_id` to stored data.""" _, expected = load_record_test(str(record_id)) # Clean the test data up a bit to make it look like a record. del expected["is_valid"] expected["id"] = record_id assert await get_record(RecordId(record_id)) == expected geneagrapher-core-0.1.3/tests/test_record.py000066400000000000000000000127421456047407400211430ustar00rootroot00000000000000from geneagrapher_core.record import ( CacheResult, fetch_document, get_advisors, get_descendants, get_institution, get_name, get_record_inner, get_year, has_record, ) from .conftest import RECORD_TESTDATA_DIR, load_record_test from glob import glob import os import pytest from unittest.mock import AsyncMock, MagicMock, patch, sentinel as s def pytest_generate_tests(metafunc: pytest.Metafunc) -> None: if "test_record_ids" in metafunc.fixturenames: # Generate a list of the IDs of test records in the test data # directory. files = glob(os.path.join(RECORD_TESTDATA_DIR, "*.toml")) metafunc.parametrize( "test_record_ids", [f.removesuffix(".toml") for f in files] ) def test_has_record(test_record_ids: str) -> None: soup, expected = load_record_test(test_record_ids) assert has_record(soup) is expected["is_valid"] @pytest.mark.asyncio @pytest.mark.parametrize("has_record", [False, True]) @pytest.mark.parametrize("cache_hit", [False, True]) @pytest.mark.parametrize("semaphore_is_none", [False, True]) @patch("geneagrapher_core.record.get_advisors") @patch("geneagrapher_core.record.get_descendants") @patch("geneagrapher_core.record.get_year") @patch("geneagrapher_core.record.get_institution") @patch("geneagrapher_core.record.get_name") @patch("geneagrapher_core.record.has_record") @patch("geneagrapher_core.record.fetch_document") @patch("geneagrapher_core.record.fake_semaphore") async def test_get_record_inner( m_fake_semaphore: AsyncMock, m_fetch_document: AsyncMock, m_has_record: MagicMock, m_get_name: MagicMock, m_get_institution: MagicMock, m_get_year: MagicMock, m_get_descendants: MagicMock, m_get_advisors: MagicMock, semaphore_is_none: bool, has_record: bool, cache_hit: bool, ) -> None: m_has_record.return_value = has_record m_soup = m_fetch_document.return_value m_cache = AsyncMock() m_cache.get.return_value = ( (CacheResult.HIT, s.cache_record) if cache_hit else (CacheResult.MISS, None) ) m_http_semaphore = None if semaphore_is_none else AsyncMock() record = await get_record_inner(s.rid, s.client_session, m_http_semaphore, m_cache) if cache_hit: assert record is s.cache_record m_fake_semaphore.return_value.__aenter__.assert_not_called() if m_http_semaphore is not None: m_http_semaphore.__aenter__.assert_not_called() m_fetch_document.assert_not_called() m_has_record.assert_not_called() m_get_name.assert_not_called() m_get_institution.assert_not_called() m_get_year.assert_not_called() m_get_descendants.assert_not_called() m_get_advisors.assert_not_called() m_cache.set.assert_not_called() else: if m_http_semaphore is None: m_fake_semaphore.return_value.__aenter__.assert_called_once_with() else: m_http_semaphore.__aenter__.assert_called_once_with() m_fake_semaphore.return_value.__aenter__.assert_not_called() m_fetch_document.assert_called_once_with(s.rid, s.client_session) m_has_record.assert_called_once_with(m_soup) if has_record: assert record == { "id": s.rid, "name": m_get_name.return_value, "institution": m_get_institution.return_value, "year": m_get_year.return_value, "descendants": m_get_descendants.return_value, "advisors": m_get_advisors.return_value, } m_get_name.assert_called_once_with(m_soup) m_get_institution.assert_called_once_with(m_soup) m_get_year.assert_called_once_with(m_soup) m_get_descendants.assert_called_once_with(m_soup) m_get_advisors.assert_called_once_with(m_soup) else: assert record is None m_get_name.assert_not_called() m_get_institution.assert_not_called() m_get_year.assert_not_called() m_get_descendants.assert_not_called() m_get_advisors.assert_not_called() m_cache.set.assert_called_once_with(s.rid, record) @pytest.mark.asyncio @patch("geneagrapher_core.record.BeautifulSoup") @patch("geneagrapher_core.record.ClientSession") async def test_fetch_document(m_client_session: MagicMock, m_bs: MagicMock) -> None: m_page = AsyncMock() m_client_session.get.return_value.__aenter__.return_value = m_page assert await fetch_document(s.rid, m_client_session) == m_bs.return_value m_client_session.get.assert_called_once_with("/id.php?id=sentinel.rid") m_bs.assert_called_once_with(m_page.text.return_value, "html.parser") def test_get_name(test_record_ids: str) -> None: soup, expected = load_record_test(test_record_ids) assert get_name(soup) == expected["name"] def test_get_institution(test_record_ids: str) -> None: soup, expected = load_record_test(test_record_ids) assert get_institution(soup) == expected.get("institution") def test_get_year(test_record_ids: str) -> None: soup, expected = load_record_test(test_record_ids) assert get_year(soup) == expected.get("year") def test_get_descendants(test_record_ids: str) -> None: soup, expected = load_record_test(test_record_ids) assert get_descendants(soup) == expected["descendants"] def test_get_advisors(test_record_ids: str) -> None: soup, expected = load_record_test(test_record_ids) assert get_advisors(soup) == expected["advisors"] geneagrapher-core-0.1.3/tests/test_traverse.py000066400000000000000000000341261456047407400215200ustar00rootroot00000000000000from geneagrapher_core.traverse import ( LifecycleTracking, MaxRecordsException, TraverseDirection, TraverseItem, build_graph, ) from geneagrapher_core.record import RecordId import pytest from typing import List, Literal, Optional from unittest.mock import ( ANY, AsyncMock, MagicMock, PropertyMock, call, patch, sentinel as s, ) class TestLifecycleTracking: def test_init(self) -> None: start_nodes = [TraverseItem(s.rid1, s.tda), TraverseItem(s.rid2, s.tda)] t = LifecycleTracking(start_nodes, s.max_records, s.report_back) assert t.todo == {ti.id: ti for ti in start_nodes} assert t.doing == {} assert t.done == set() assert t.max_records == s.max_records assert t._report_callback == s.report_back @pytest.mark.parametrize( "todo,doing,expected", [ ([], {}, True), ([TraverseItem(s.rid1, s.tda)], {}, False), ([], {s.rid1: TraverseItem(s.rid1, s.tda)}, False), ( [TraverseItem(s.rid1, s.tda)], {s.rid2: TraverseItem(s.rid2, s.tda)}, False, ), ], ) def test_all_done( self, todo: List[TraverseItem], doing: dict[RecordId, TraverseItem], expected: bool, ) -> None: t = LifecycleTracking(todo, s.max_records) t.doing = doing assert t.all_done is expected @pytest.mark.parametrize( "todo,expected", [ ([], 0), ([TraverseItem(s.rid1, s.tda)], 1), ([TraverseItem(s.rid1, s.tda), TraverseItem(s.rid2, s.tda)], 2), ], ) def test_num_todo(self, todo: List[TraverseItem], expected: int) -> None: t = LifecycleTracking(todo, s.max_records) assert t.num_todo == expected @pytest.mark.parametrize( "doing,expected", [ ({}, 0), ({s.rid1: TraverseItem(s.rid1, s.tda)}, 1), ( { s.rid1: TraverseItem(s.rid1, s.tda), s.rid2: TraverseItem(s.rid2, s.tda), }, 2, ), ], ) def test_num_doing( self, doing: dict[RecordId, TraverseItem], expected: int, ) -> None: t = LifecycleTracking([], s.max_records) t.doing = doing assert t.num_doing == expected @pytest.mark.parametrize( "doing,num_records_received,expected", [ ({}, 0, 0), ({}, 14, 14), ({s.rid1: TraverseItem(s.rid1, s.tda)}, 0, 1), ({s.rid1: TraverseItem(s.rid1, s.tda)}, 13, 14), ( { s.rid1: TraverseItem(s.rid1, s.tda), s.rid2: TraverseItem(s.rid2, s.tda), }, 0, 2, ), ( { s.rid1: TraverseItem(s.rid1, s.tda), s.rid2: TraverseItem(s.rid2, s.tda), }, 12, 14, ), ], ) def test_potential_fetched_records( self, doing: dict[RecordId, TraverseItem], num_records_received: int, expected: int, ) -> None: t = LifecycleTracking([], s.max_records) t.doing = doing t.num_records_received = num_records_received assert t.potential_fetched_records == expected @pytest.mark.asyncio @pytest.mark.parametrize( "start_nodes,new_node,new_direction,final_todo", [ ( [TraverseItem(s.rid1, s.tda), TraverseItem(s.rid2, s.tda)], s.rid1, s.tda, { s.rid1: TraverseItem(s.rid1, s.tda), s.rid2: TraverseItem(s.rid2, s.tda), }, ), ( [TraverseItem(s.rid1, s.tda), TraverseItem(s.rid2, s.tda)], s.rid3, s.tda, { s.rid1: TraverseItem(s.rid1, s.tda), s.rid2: TraverseItem(s.rid2, s.tda), s.rid3: TraverseItem(s.rid3, s.tda), }, ), ( [TraverseItem(s.rid1, s.tda), TraverseItem(s.rid2, s.tda)], s.rid1, s.tdd, { s.rid1: TraverseItem(s.rid1, s.tda), s.rid2: TraverseItem(s.rid2, s.tda), }, ), ( [TraverseItem(s.rid1, s.tda), TraverseItem(s.rid2, s.tda)], s.rid3, s.tdd, { s.rid1: TraverseItem(s.rid1, s.tda), s.rid2: TraverseItem(s.rid2, s.tda), s.rid3: TraverseItem(s.rid3, s.tdd), }, ), ], ) @patch("geneagrapher_core.traverse.LifecycleTracking.report_back") async def test_create( self, m_report_back: MagicMock, start_nodes: List[TraverseItem], new_node: RecordId, new_direction: TraverseDirection, final_todo: dict[RecordId, TraverseItem], ) -> None: t = LifecycleTracking(start_nodes, s.max_records) await t.create(new_node, new_direction) assert t.todo == final_todo @pytest.mark.asyncio async def test_start_next(self) -> None: start_nodes = [TraverseItem(s.rid1, s.tda), TraverseItem(s.rid2, s.tda)] t = LifecycleTracking(start_nodes, s.max_records) next_rec = await t.start_next() assert next_rec in start_nodes assert t.todo == {sn.id: sn for sn in start_nodes if sn.id != next_rec.id} assert t.doing == {sn.id: sn for sn in start_nodes if sn.id == next_rec.id} @pytest.mark.asyncio @pytest.mark.parametrize( "got_record,expected_num_records_received", ([False, 0], [True, 1]), ) @patch("geneagrapher_core.traverse.LifecycleTracking.report_back") async def test_finish( self, m_report_back: MagicMock, got_record: bool, expected_num_records_received: int, ) -> None: t = LifecycleTracking([TraverseItem(s.rid1, s.tda)], s.max_records) t.doing[s.rid2] = TraverseItem(s.rid2, s.tda) await t.finish(s.rid2, got_record) assert t.doing == {} assert t.done == {s.rid2} assert t.num_records_received == expected_num_records_received m_report_back.assert_called_once_with() @pytest.mark.asyncio @pytest.mark.parametrize( "max_records,num_records_received,num_potential_fetched_records,expected_num_fre_clear_calls,\ expected_num_fre_wait_calls,expect_exception", ( [None, 0, (1000, 2000), 0, 0, False], [10, 0, (19,), 0, 0, False], [10, 0, (20, 19), 1, 1, False], [10, 10, (20, 19), 0, 0, True], [10, 0, (20, 21, 19), 2, 2, False], ), ) @patch.object( LifecycleTracking, "potential_fetched_records", new_callable=PropertyMock ) async def test_process_another( self, m_potential_fetched_records: MagicMock, max_records: int, num_records_received: int, num_potential_fetched_records: List[int], expected_num_fre_clear_calls: int, expected_num_fre_wait_calls: int, expect_exception: bool, ) -> None: m_potential_fetched_records.side_effect = num_potential_fetched_records t = LifecycleTracking([], max_records) t.num_records_received = num_records_received t.finished_record_event = MagicMock() t.finished_record_event.wait = AsyncMock() if expect_exception: with pytest.raises(MaxRecordsException): await t.process_another() else: await t.process_another() assert ( len(t.finished_record_event.clear.call_args_list) == expected_num_fre_clear_calls ) assert ( len(t.finished_record_event.wait.call_args_list) == expected_num_fre_wait_calls ) @pytest.mark.asyncio @pytest.mark.parametrize("report_callback", [None, AsyncMock()]) async def test_report_back(self, report_callback: Optional[AsyncMock]) -> None: t = LifecycleTracking( [TraverseItem(s.rid1, s.tda)], s.max_records, report_callback ) await t.report_back() if report_callback is not None: report_callback.assert_called_once_with(1, 0, 0) @pytest.mark.asyncio @pytest.mark.parametrize( "start_nodes,max_records,user_agent,expected_graph_records,expected_call_ids,\ expected_num_report_callbacks,expected_status", [ ( [ TraverseItem(RecordId(1), TraverseDirection.ADVISORS), TraverseItem(RecordId(2), TraverseDirection.ADVISORS), ], None, None, [1, 2, 3, 4], [1, 2, 3, 4, 5], 13, "complete", ), ( [ TraverseItem(RecordId(1), TraverseDirection.ADVISORS), TraverseItem(RecordId(2), TraverseDirection.ADVISORS), ], None, "test user agent", [1, 2, 3, 4], [1, 2, 3, 4, 5], 13, "complete", ), ( [ TraverseItem(RecordId(1), TraverseDirection.DESCENDANTS), TraverseItem(RecordId(2), TraverseDirection.ADVISORS), ], None, None, [1, 2, 3, 6, 7, 8], [1, 2, 3, 5, 6, 7, 8, 9], 22, "complete", ), ( [ TraverseItem( RecordId(1), TraverseDirection.ADVISORS | TraverseDirection.DESCENDANTS, ), TraverseItem(RecordId(2), TraverseDirection.ADVISORS), ], None, None, [1, 2, 3, 4, 6, 7, 8], [1, 2, 3, 4, 5, 6, 7, 8, 9], 25, "complete", ), ( [ TraverseItem( RecordId(1), TraverseDirection.ADVISORS | TraverseDirection.DESCENDANTS, ), TraverseItem(RecordId(2), TraverseDirection.ADVISORS), ], 7, None, [1, 2, 3, 4, 6, 7, 8], [1, 2, 3, 4, 5, 6, 7, 8, 9], 25, "complete", ), ( [ TraverseItem( RecordId(1), TraverseDirection.ADVISORS | TraverseDirection.DESCENDANTS, ), TraverseItem(RecordId(2), TraverseDirection.ADVISORS), ], 4, None, [1, 2, 6, 7], [1, 2, 3, 4, 5, 6, 7, 8, 9], 25, "truncated", ), ], ) @patch("geneagrapher_core.traverse.get_record_inner") @patch("geneagrapher_core.traverse.ClientSession") async def test_build_graph( m_client_session: MagicMock, m_get_record_inner: MagicMock, start_nodes: List[TraverseItem], max_records: Optional[int], user_agent: Optional[str], expected_graph_records: List[int], expected_call_ids: List[int], expected_num_report_callbacks: int, expected_status: Literal["complete", "truncated"], ) -> None: m_session = AsyncMock() m_client_session.return_value.__aenter__.return_value = m_session m_http_semaphore = AsyncMock() m_report_callback = AsyncMock() m_record_callback = AsyncMock() testdata = { 1: { "id": 1, "advisors": [3, 4], "descendants": [6, 7], }, 2: { "id": 2, "advisors": [3, 5], "descendants": [6, 8], }, 3: { "id": 3, "advisors": [], "descendants": [1, 2], }, 4: { "id": 4, "advisors": [], "descendants": [1], }, 5: None, 6: { "id": 6, "advisors": [1, 2], "descendants": [8], }, 7: { "id": 7, "advisors": [1], "descendants": [9], }, 8: { "id": 8, "advisors": [2], "descendants": [9], }, 9: None, } m_get_record_inner.side_effect = ( lambda record_id, client, semaphore, cache: testdata[record_id] ) expected = { "start_nodes": [r.id for r in start_nodes], "nodes": {rid: testdata[rid] for rid in expected_graph_records}, "status": expected_status, } assert ( await build_graph( start_nodes, http_semaphore=m_http_semaphore, max_records=max_records, user_agent=user_agent, cache=s.cache, record_callback=m_record_callback, report_callback=m_report_callback, ) == expected ) expected_headers = None if user_agent is None else {"User-Agent": user_agent} m_client_session.assert_called_once_with( "https://www.mathgenealogy.org", headers=expected_headers ) assert len(m_get_record_inner.call_args_list) == len(expected_call_ids) for c in [ call(rid, m_session, m_http_semaphore, s.cache) for rid in expected_call_ids ]: assert c in m_get_record_inner.call_args_list # Check the reporting callback calls. assert len(m_report_callback.mock_calls) == expected_num_report_callbacks assert m_report_callback.call_args == call( ANY, 0, 0, len(expected_call_ids) ) # ANY is a placeholder for the TaskGroup object passed to the callback function # Check the record callback calls. assert len(m_record_callback.mock_calls) == len(expected_graph_records) for record_id in expected_graph_records: assert ( call(ANY, testdata[record_id]) in m_record_callback.mock_calls ) # ANY is a placeholder for the TaskGroup object passed to the callback # function geneagrapher-core-0.1.3/tests/testdata_records/000077500000000000000000000000001456047407400216005ustar00rootroot00000000000000geneagrapher-core-0.1.3/tests/testdata_records/131446.html000066400000000000000000000270431456047407400232360ustar00rootroot00000000000000 Moses Perez - The Mathematics Genealogy Project

Moses Perez

Dissertation:

Advisor: Unknown

Student:

NameSchoolYearDescendants
Aleandro, GirolamoUniversità degli Studi di Padova1499, 1508201978

According to our current on-line database, Moses Perez has 1 student and 201979 descendants.
We welcome any additional information.

If you have additional information or corrections regarding this mathematician, please use the update form. To submit students of this mathematician, please use the new data form, noting this mathematician's MGP ID of 131446 for the advisor ID.

geneagrapher-core-0.1.3/tests/testdata_records/131446.toml000066400000000000000000000001611456047407400232350ustar00rootroot00000000000000is_valid = true name = "Moses Perez" # institution is null # year is null descendants = [ 127181 ] advisors = [] geneagrapher-core-0.1.3/tests/testdata_records/131575.html000066400000000000000000000304101456047407400232310ustar00rootroot00000000000000 Georgios Gemistos - The Mathematics Genealogy Project

Georgios Plethon Gemistos

1380, 1393
Dissertation: Nómoi (Book of Laws)

Advisor 1: Demetrios Kydones
Advisor 2: Elissaeus Judaeus

Students:
Click here to see the students listed in chronological order.

NameSchoolYearDescendants
Bessarion, BasiliosMystras1436202064
Chalkokondyles, LaonikosUniversity of Crete
Palaiologos, Theodoros IIMystras1425

According to our current on-line database, Georgios Gemistos has 3 students and 202067 descendants.
We welcome any additional information.

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geneagrapher-core-0.1.3/tests/testdata_records/131575.toml000066400000000000000000000002341456047407400232410ustar00rootroot00000000000000is_valid = true name = "Georgios Plethon Gemistos" # institution is null year = 1380 descendants = [ 131561, 157015, 133754 ] advisors = [ 134780, 134781 ] geneagrapher-core-0.1.3/tests/testdata_records/145780.html000066400000000000000000000260001456047407400232340ustar00rootroot00000000000000 Eberhard Schrader - The Mathematics Genealogy Project

Eberhard Schrader

D. Phil. Georg-August-Universität Göttingen 1860 Germany
Dissertation: De linguae Aethiopicae cum cognatis linguis comparatae indole universa

Advisor 1: Heinrich A. (Georg Heinrich August) Ewald

No students known.

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geneagrapher-core-0.1.3/tests/testdata_records/145780.toml000066400000000000000000000002231456047407400232420ustar00rootroot00000000000000is_valid = true name = "Eberhard Schrader" institution = "Georg-August-Universität Göttingen" year = 1860 descendants = [] advisors = [ 145778 ] geneagrapher-core-0.1.3/tests/testdata_records/157015.html000066400000000000000000000257201456047407400232360ustar00rootroot00000000000000 Laonikos Chalkokondyles - The Mathematics Genealogy Project

Laonikos Chalkokondyles

University of Crete Greece
Dissertation:

Advisor 1: Georgios Plethon Gemistos
Advisor 2: Michael Apostolis

No students known.

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geneagrapher-core-0.1.3/tests/testdata_records/157015.toml000066400000000000000000000002231456047407400232340ustar00rootroot00000000000000is_valid = true name = "Laonikos Chalkokondyles" institution = "University of Crete" # year is null descendants = [] advisors = [ 131575, 157013 ] geneagrapher-core-0.1.3/tests/testdata_records/17864.html000066400000000000000000000317361456047407400231710ustar00rootroot00000000000000 Joseph Lagrange - The Mathematics Genealogy Project

Joseph Louis Lagrange

Biography

no degree
Dissertation: We show a link to Euler to show a connection in our intellectual heritage. (hbc)

Advisor: Leonhard Paul Euler

B.A. Università di Torino 1754 Italy
Dissertation:

Advisor 1: Giovanni Battista (Giambattista) Beccaria

Students:
Click here to see the students listed in chronological order.

NameSchoolYearDescendants
Fourier, Jean-BaptisteÉcole Normale Supérieure77399
Plana, GiovanniÉcole Polytechnique
Poisson, SiméonÉcole Polytechnique1800135173

According to our current on-line database, Joseph Lagrange has 3 students and 135176 descendants.
We welcome any additional information.

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geneagrapher-core-0.1.3/tests/testdata_records/17864.toml000066400000000000000000000002441456047407400231660ustar00rootroot00000000000000is_valid = true name = "Joseph Louis Lagrange" institution = "Università di Torino" year = 1754 descendants = [ 17981, 43262, 17865 ] advisors = [ 38586, 146036 ] geneagrapher-core-0.1.3/tests/testdata_records/18231.html000066400000000000000000000366251456047407400231600ustar00rootroot00000000000000 Carl Gauß - The Mathematics Genealogy Project

Carl Friedrich Gauß

Biography MathSciNet

Ph.D. Universität Helmstedt 1799 Germany
Dissertation: Demonstratio nova theorematis omnem functionem algebraicam rationalem integram unius variabilis in factores reales primi vel secundi gradus resolvi posse

Advisor 1: Johann Friedrich Pfaff

Students:
Click here to see the students listed in chronological order.

NameSchoolYearDescendants
Bessel, FriedrichGeorg-August-Universität Göttingen181046653
Dedekind, J. W. RichardGeorg-August-Universität Göttingen1852
Encke, Johann13580
Gerling, ChristianGeorg-August-Universität Göttingen181278980
Germain, SophieGeorg-August-Universität Göttingen1830
Gräffe, CarlGeorg-August-Universität Göttingen1825
Klinkerfues, WilhelmGeorg-August-Universität Göttingen1855
Listing, JohannGeorg-August-Universität Göttingen18342447
Riemann, BernhardGeorg-August-Universität Göttingen18512765
Schumacher, HeinrichGeorg-August-Universität Göttingen180697
Spehr, Friedrich WilhelmGeorg-August-Universität Göttingen1824
Stern, MoritzGeorg-August-Universität Göttingen1829152
Svanberg, GustafGeorg-August-Universität Göttingen and Uppsala Universitet18252
von Staudt, KarlFriedrich-Alexander-Universität Erlangen-Nürnberg18222354
Wichmann, MoritzGeorg-August-Universität Göttingen1843

According to our current on-line database, Carl Gauß has 15 students and 110856 descendants.
We welcome any additional information.

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geneagrapher-core-0.1.3/tests/testdata_records/18231.toml000066400000000000000000000003741456047407400231570ustar00rootroot00000000000000is_valid = true name = "Carl Friedrich Gauß" institution = "Universität Helmstedt" year = 1799 descendants = [ 18603, 18233, 62547, 29642, 55175, 225908, 234267, 19953, 18232, 234374, 217618, 165758, 234500, 151876, 166471 ] advisors = [ 18230 ] geneagrapher-core-0.1.3/tests/testdata_records/50509.html000066400000000000000000000274251456047407400231620ustar00rootroot00000000000000 Niels Nielsen - The Mathematics Genealogy Project

Niels Nielsen

Biography

Ph.D. Københavns Universitet 1895 Denmark
Dissertation:

Advisor: Unknown

Student:

NameSchoolYearDescendants
Rasch, GeorgKøbenhavns Universitet193021

According to our current on-line database, Niels Nielsen has 1 student and 22 descendants.
We welcome any additional information.

If you have additional information or corrections regarding this mathematician, please use the update form. To submit students of this mathematician, please use the new data form, noting this mathematician's MGP ID of 50509 for the advisor ID.

geneagrapher-core-0.1.3/tests/testdata_records/50509.toml000066400000000000000000000002021456047407400231510ustar00rootroot00000000000000is_valid = true name = "Niels Nielsen" institution = "Københavns Universitet" year = 1895 descendants = [ 77126 ] advisors = [ ] geneagrapher-core-0.1.3/tests/testdata_records/51506.html000066400000000000000000000375341456047407400231620ustar00rootroot00000000000000 Harry Buhrman - The Mathematics Genealogy Project

Harry Matthijs Buhrman

MathSciNet

Ph.D. Universiteit van Amsterdam 1993 Netherlands
Dissertation: Resource Bounded Reductions
Mathematics Subject Classification: 68—Computer science

Co-Promotor: Peter van Emde Boas
Co-Promotor: Leen Torenvliet
Promotor: Steven Elliot Homer

Students:
Click here to see the students listed in chronological order.

NameSchoolYearDescendants
Arunachalam, SrinivasanUniversiteit van Amsterdam and Centrum Wiskunde & Informatica2018
Bannink, TomUniversiteit van Amsterdam2020
Briët, JopUniversiteit van Amsterdam2011
de Wolf, RonaldUniversiteit van Amsterdam20017
Dulek, YfkeUniversiteit van Amsterdam2021
García Soriano, DavidUniversiteit van Amsterdam2012
Gilyén, AndrásUniversiteit van Amsterdam and Centrum Wiskunde & Informatica2019
Groenland, KoenUniversiteit van Amsterdam2020
Lee, TroyUniversiteit van Amsterdam2006
Loff, BrunoUniversiteit van Amsterdam2014
Patro, SubhasreeUniversiteit van Amsterdam2023
Piovesan, TeresaUniversiteit van Amsterdam2016
Röhrig, HeinUniversiteit van Amsterdam2004
Spalek, RobertUniversiteit van Amsterdam2006
Speelman, FlorianUniversiteit van Amsterdam20161
Unger, FalkUniversiteit van Amsterdam2008
Wehner, StephanieUniversiteit van Amsterdam2008
Zuiddam, JeroenUniversiteit van Amsterdam2018

According to our current on-line database, Harry Buhrman has 18 students and 23 descendants.
We welcome any additional information.

If you have additional information or corrections regarding this mathematician, please use the update form. To submit students of this mathematician, please use the new data form, noting this mathematician's MGP ID of 51506 for the advisor ID.

geneagrapher-core-0.1.3/tests/testdata_records/51506.toml000066400000000000000000000004541456047407400231600ustar00rootroot00000000000000is_valid = true name = "Harry Matthijs Buhrman" institution = "Universiteit van Amsterdam" year = 1993 descendants = [ 240289, 295390, 158219, 66048, 295426, 165088, 251184, 295391, 95129, 204461, 295555, 210719, 77144, 133796, 257711, 128790, 117466, 243367 ] advisors = [ 51477, 51475, 32787 ] geneagrapher-core-0.1.3/tests/testdata_records/62547.html000066400000000000000000000330301456047407400231540ustar00rootroot00000000000000 Johann Encke - The Mathematics Genealogy Project

Johann Franz Friedrich Encke

no degree
Dissertation: We show a link to Gauß to show a connection in our intellectual heritage.

Advisor 1: Carl Friedrich Gauß

Dr. phil. h.c. Universität Berlin 1825 Germany
Dissertation:
Mathematics Subject Classification: 85—Astronomy and astrophysics

Advisor: Unknown

Students:
Click here to see the students listed in chronological order.

NameSchoolYearDescendants
Bruhns, CarlUniversität Berlin18567463
d'Arrest, HeinrichUniversität Leipzig185046
Kramer, AugustHumboldt-Universität zu Berlin1839
Kronecker, LeopoldUniversität Berlin18456231
Raatz, JosephHumboldt-Universität zu Berlin1861
Woepcke, FranzHumboldt-Universität zu Berlin1847

According to our current on-line database, Johann Encke has 6 students and 13540 descendants.
We welcome any additional information.

If you have additional information or corrections regarding this mathematician, please use the update form. To submit students of this mathematician, please use the new data form, noting this mathematician's MGP ID of 62547 for the advisor ID.

geneagrapher-core-0.1.3/tests/testdata_records/62547.toml000066400000000000000000000002701456047407400231630ustar00rootroot00000000000000is_valid = true name = "Johann Franz Friedrich Encke" institution = "Universität Berlin" year = 1825 descendants = [ 65029, 168940, 156729, 17982, 62590, 63737 ] advisors = [ 18231 ] geneagrapher-core-0.1.3/tests/testdata_records/999999.html000066400000000000000000000001421456047407400232700ustar00rootroot00000000000000

You have specified an ID that does not exist in the database. Please back up and try again.

geneagrapher-core-0.1.3/tests/testdata_records/999999.toml000066400000000000000000000000721456047407400233010ustar00rootroot00000000000000is_valid = false name = "" descendants = [] advisors = [] geneagrapher-core-0.1.3/tests/testdata_records/9999999999999999999999999.html000066400000000000000000000000421456047407400253620ustar00rootroot00000000000000Non-numeric id supplied. Aborting.geneagrapher-core-0.1.3/tests/testdata_records/9999999999999999999999999.toml000066400000000000000000000000721456047407400253740ustar00rootroot00000000000000is_valid = false name = "" descendants = [] advisors = []