gff2aplot-2.0.orig/0000755000000000000000000000000010220353535014132 5ustar rootroot00000000000000gff2aplot-2.0.orig/GNU-GPL0000644000000000000000000004403207667662607015161 0ustar rootroot00000000000000 NOTE! This copyright does *not* cover user programs that use kernel services by normal system calls - this is merely considered normal use of the kernel, and does *not* fall under the heading of "derived work". Also note that the GPL below is copyrighted by the Free Software Foundation, but the instance of code that it refers to (the linux kernel) is copyrighted by me and others who actually wrote it. Linus Torvalds ---------------------------------------- GNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc. 675 Mass Ave, Cambridge, MA 02139, USA Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The licenses for most software are designed to take away your freedom to share and change it. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change free software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation's software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by the GNU Library General Public License instead.) You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not price. Our General Public Licenses are designed to make sure that you have the freedom to distribute copies of free software (and charge for this service if you wish), that you receive source code or can get it if you want it, that you can change the software or use pieces of it in new free programs; and that you know you can do these things. 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If the software is modified by someone else and passed on, we want its recipients to know that what they have is not the original, so that any problems introduced by others will not reflect on the original authors' reputations. Finally, any free program is threatened constantly by software patents. We wish to avoid the danger that redistributors of a free program will individually obtain patent licenses, in effect making the program proprietary. To prevent this, we have made it clear that any patent must be licensed for everyone's free use or not licensed at all. The precise terms and conditions for copying, distribution and modification follow. GNU GENERAL PUBLIC LICENSE TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION 0. This License applies to any program or other work which contains a notice placed by the copyright holder saying it may be distributed under the terms of this General Public License. The "Program", below, refers to any such program or work, and a "work based on the Program" means either the Program or any derivative work under copyright law: that is to say, a work containing the Program or a portion of it, either verbatim or with modifications and/or translated into another language. (Hereinafter, translation is included without limitation in the term "modification".) Each licensee is addressed as "you". Activities other than copying, distribution and modification are not covered by this License; they are outside its scope. The act of running the Program is not restricted, and the output from the Program is covered only if its contents constitute a work based on the Program (independent of having been made by running the Program). Whether that is true depends on what the Program does. 1. You may copy and distribute verbatim copies of the Program's source code as you receive it, in any medium, provided that you conspicuously and appropriately publish on each copy an appropriate copyright notice and disclaimer of warranty; keep intact all the notices that refer to this License and to the absence of any warranty; and give any other recipients of the Program a copy of this License along with the Program. You may charge a fee for the physical act of transferring a copy, and you may at your option offer warranty protection in exchange for a fee. 2. You may modify your copy or copies of the Program or any portion of it, thus forming a work based on the Program, and copy and distribute such modifications or work under the terms of Section 1 above, provided that you also meet all of these conditions: a) You must cause the modified files to carry prominent notices stating that you changed the files and the date of any change. b) You must cause any work that you distribute or publish, that in whole or in part contains or is derived from the Program or any part thereof, to be licensed as a whole at no charge to all third parties under the terms of this License. c) If the modified program normally reads commands interactively when run, you must cause it, when started running for such interactive use in the most ordinary way, to print or display an announcement including an appropriate copyright notice and a notice that there is no warranty (or else, saying that you provide a warranty) and that users may redistribute the program under these conditions, and telling the user how to view a copy of this License. (Exception: if the Program itself is interactive but does not normally print such an announcement, your work based on the Program is not required to print an announcement.) These requirements apply to the modified work as a whole. If identifiable sections of that work are not derived from the Program, and can be reasonably considered independent and separate works in themselves, then this License, and its terms, do not apply to those sections when you distribute them as separate works. But when you distribute the same sections as part of a whole which is a work based on the Program, the distribution of the whole must be on the terms of this License, whose permissions for other licensees extend to the entire whole, and thus to each and every part regardless of who wrote it. 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You may copy and distribute the Program (or a work based on it, under Section 2) in object code or executable form under the terms of Sections 1 and 2 above provided that you also do one of the following: a) Accompany it with the complete corresponding machine-readable source code, which must be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, b) Accompany it with a written offer, valid for at least three years, to give any third party, for a charge no more than your cost of physically performing source distribution, a complete machine-readable copy of the corresponding source code, to be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, c) Accompany it with the information you received as to the offer to distribute corresponding source code. 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If the distribution and/or use of the Program is restricted in certain countries either by patents or by copyrighted interfaces, the original copyright holder who places the Program under this License may add an explicit geographical distribution limitation excluding those countries, so that distribution is permitted only in or among countries not thus excluded. In such case, this License incorporates the limitation as if written in the body of this License. 9. The Free Software Foundation may publish revised and/or new versions of the General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns. Each version is given a distinguishing version number. If the Program specifies a version number of this License which applies to it and "any later version", you have the option of following the terms and conditions either of that version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of this License, you may choose any version ever published by the Free Software Foundation. 10. If you wish to incorporate parts of the Program into other free programs whose distribution conditions are different, write to the author to ask for permission. For software which is copyrighted by the Free Software Foundation, write to the Free Software Foundation; we sometimes make exceptions for this. Our decision will be guided by the two goals of preserving the free status of all derivatives of our free software and of promoting the sharing and reuse of software generally. NO WARRANTY 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. END OF TERMS AND CONDITIONS Appendix: How to Apply These Terms to Your New Programs If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms. To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found. Copyright (C) 19yy This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA. Also add information on how to contact you by electronic and paper mail. If the program is interactive, make it output a short notice like this when it starts in an interactive mode: Gnomovision version 69, Copyright (C) 19yy name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details. The hypothetical commands `show w' and `show c' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w' and `show c'; they could even be mouse-clicks or menu items--whatever suits your program. You should also get your employer (if you work as a programmer) or your school, if any, to sign a "copyright disclaimer" for the program, if necessary. Here is a sample; alter the names: Yoyodyne, Inc., hereby disclaims all copyright interest in the program `Gnomovision' (which makes passes at compilers) written by James Hacker. , 1 April 1989 Ty Coon, President of Vice This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Library General Public License instead of this License. gff2aplot-2.0.orig/README0000644000000000000000000001336107667662607015046 0ustar rootroot00000000000000## ## README FOR GFF2APLOT v2.0 ## ## ## $Id: README,v 1.1 2003/03/17 17:58:46 jabril Exp $ ## Dear User: This file contains important program information. Please read these tips through carefully, before beginning to work with GFF2APLOT. See INSTALL file for further tips on how to install the program and related scripts on your system. ------------------------------------------------------------------------------- License Terms ------------------------------------------------------------------------------- GFF2APLOT v2.0 a program to visualize the alignment of two genomic sequences together with their annotations. From GFF-format input files it produces PostScript figures for that alignment. Copyright (C) 1999-2003 - Josep Francesc ABRIL FERRANDO Thomas WIEHE Roderic GUIGO SERRA This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version (http://www.gnu.org). This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA. ------------------------------------------------------------------------------- Author's Address ------------------------------------------------------------------------------- Josep Francesc ABRIL FERRANDO GENOME BIOINFORMATICS LAB GRIB --- IMIM / UPF / CRG Passeig Maritim de la Barceloneta, 37-49. 08003 - Barcelona, Catalonia, Spain. Phone: +34 93 2240302 Fax: +34 93 2240875 e-mail: jabril@imim.es URL: http://genome.imim.es/~jabril ------------------------------------------------------------------------------- Listing Files for Current Distribution ------------------------------------------------------------------------------- You can retrieve the latests files from the following FTP address: ftp://genome.imim.es/pub/gff_tools/gff2aplot/ The current distribution tarball contains the following files and subdirectories: README This file... GNU-GPL The GNU General Public License Version 2. INSTALL Instructions on how to prepare the GFF2APLOT scripts to run them in your system. Please, take a look at it... Makefile Well, you know... ;^D src/ GFF2APLOT and related scripts. src/gff2aplot.pl The main program, which converts GFF input into alignment PostScript plots. src/parseblast.pl A parser for the standard output from most of the BLAST programs available (NCBI-Blast/WashU-Blast/WebBlast/MegaBlast). src/blat2gff.pl Filtering BLAT output into GFF. src/sim2gff.pl Converting SIM output into GFF. src/ali2gff C program that parses SIM/Mummer output and produces GFF records for the alignment. bin/ It is empty until you make the executables for the distribution. doc/ Contains documentation for gff2aplot, initially the "User's Manual". examples/ A set of three examples, in separate directories, each containing GFF data, customization files and PostScript output obtained with gff2aplot. See the corresponding README file to see how the figures were generated. examples/wublast/ examples/mhcregion/ examples/splice_sites/ ------------------------------------------------------------------------------- Reporting Bugs and Suggestions ------------------------------------------------------------------------------- + GFF2APLOT author's e-mail adress: jabril@imim.es + HELP: If you need help after reading manual pages you are free to send an e-mail to authors. It will help to filter your mail properly if you start your subject string with "[GFF2APLOT] HELP:". You will get a reply as soon as possible. + BUGS: If you find any bug or something is not plotted properly, you can send a bug report which subject string may start with "[GFF2APLOT] BUG:". + SUGGESTIONS: We thank any helpful suggestion for improving our program. Message subject string will start with "[GFF2APLOT] SUGGEST:". ------------------------------------------------------------------------------- Acknowledgements ------------------------------------------------------------------------------- We would like to thank Matthias Platzer, at IMB, Jena, for helpful comments while developing the program prototype. We would like to thank the colleagues at Genome Bioinformatics Lab within the GRIB for their extensive testing of GFF2APLOT. We would also thank users that will cite the paper on GFF2APLOT, or at least it's web-site URL. Paper is currently submitted, so you may cite GFF2APLOT as: http://genome.imim.es/software/gfftools/GFF2APLOT.html ------------------------------------------------------------------------------- gff2aplot-2.0.orig/INSTALL0000644000000000000000000000673207667662610015215 0ustar rootroot00000000000000## ## INSTRUCTIONS TO INSTALL GFF2APLOT v2.0 ## ## ## $Id: INSTALL,v 1.1 2003/03/17 17:58:46 jabril Exp $ ## GFF2APLOT v2.0 a program to visualize the alignment of two genomic sequences together with their annotations. From GFF-format input files it produces PostScript figures for that alignment. Copyright (C) 1999-2003 - Josep Francesc ABRIL FERRANDO Thomas WIEHE Roderic GUIGO SERRA ------------------------------------------------------------------------------- Installing GFF2APLOT v2.0 ------------------------------------------------------------------------------- + PROGRAM's PRE-REQUISITES: gff2aplot needs the following Perl modules installed in your system, we used those available from the standard Perl distribution. Those that are not in the standard distribution are marked with an '(*)', although this will change from one installation to another. In such cases make sure that you already have downloaded them from CPAN (http://www.perl.com/CPAN) and get them installed. "Getopt::Long" - processing command-line options. "Benchmark" - checking and comparing running times of code. "Data::Dumper" - pretty printing data structures for debugging (*?). + INSTALLING SOFTWARE: You will find a Makefile in the distribution directory that you may need to edit in order to install GFF2APLOT. In principle, you only need to modify the INSTALLDIR variable, although you can achieve the same effect from command-line, as shown latter in this document. Depending on the system, you may also have to modify/update the ali2gff Makefile that can be found at the src/ali2gff directory. GFF2APLOT Makefiles were developed and tested on a Red Hat Linux box running GNU Make version 3.79.1. Once you have set up the makefile, just type: make and then: make install By default, the latter command will move all the scripts to /usr/local/bin but if you want to place all the exec files into another directory, just define the new installation path as follows: make INSTALLDIR=/your/path/bin install Another way of doing that is modifying that variable on the Makefile accordingly to your needs. Our apologies but there is not a 'make test' yet... Thanks for using GFF2APLOT, we hope you will enjoy it and it will be useful for your research. + SETTING ENVIRONMENT VARIABLES: There are two environmental variables that can be set by users to their preferences: + You can specify the path where gff2aplot can find the default files with the shell variable "GFF2APLOT_CUSTOMPATH". Default value is the path where you are running gff2aplot. + You can also define the default custom filename you will like with the variable "GFF2APLOT_CUSTOMFILE", program default filename for custom file is ".gff2aplotrc". + Now gff2aplot does not need to write any temporary file, so that previous versions default temporary directory path variable ("GFF2APLOT_TMP") is no longer used. + Setting those vars in Bourne-shell and C-shell: o Using a Bourne-Shell (e.g. bash): export GFF2APLOT_CUSTOMPATH="path" export GFF2APLOT_CUSTOMFILE="file_name" o Using a C-Shell: setenv GFF2APLOT_CUSTOMPATH "path" setenv GFF2APLOT_CUSTOMFILE "file_name" ------------------------------------------------------------------------------- gff2aplot-2.0.orig/Makefile0000644000000000000000000001304507667662610015617 0ustar rootroot00000000000000# %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% # # INSTALLING GFF2APLOT FILES # # %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% # # The following Makefile was developed # on a Red Hat Linux box running on GNU Make version 3.79.1 # # %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% # # Copyright (C) 1999-2003 - Josep Francesc ABRIL FERRANDO # Thomas WIEHE # Roderic GUIGO SERRA # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; if not, write to the Free Software # Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA. # # %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% # # $Id: dist_Makefile,v 1.1 2003/03/17 17:58:46 jabril Exp $ # # %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% # # INSTALLDIR is the only variable that should be modified # (unless you were not using GNUmake, of course, because in such # case you must fix all the GNUmake specific commands... ;^D). # # %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% # ### PATHS BBIN = /bin UBIN = /usr/bin LBIN = /usr/local/bin #%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% # REMEMBER: INSTALLDIR is the only variable that should be modified INSTALLDIR = $(LBIN) #%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% # ### MAKE VARS .PHONY : clean cleanall forceall .DEFAULT : all .PRECIOUS : %.sh %.awk %.pl %.pm %.ps %.tgz %.gz \ %.rc %.gff %.gb %.fa README .SECONDARY : .SUFFIXES : # ### INTERPRETERS DATE = $(shell date) USER = $(shell whoami) GAWK = $(firstword $(shell which gawk)) GAWKV = $(shell $(GAWK) --version | \ $(GAWK) '$$0 ~ /^GNU Awk/ { print $$0; }') BASH = $(firstword $(shell which bash)) BASHV = $(shell $(BASH) --version | \ $(GAWK) '$$0 ~ /^GNU bash/ { print $$0; }') PERL = $(firstword $(shell which perl)) PERLV = $(shell $(PERL) --version | \ $(GAWK) '$$0 ~ /^This/ { \ gsub(/^This is perl,[ \t]+/,"",$$0); \ print $$0; \ }') #' # ### COMMANDS # You can update the following paths to your system settings V = -v RM = $(firstword $(shell which rm )) $(V) RD = $(firstword $(shell which rmdir)) $(V) CP = $(firstword $(shell which cp )) $(V) MV = $(firstword $(shell which mv )) $(V) LN = $(firstword $(shell which ln )) $(V) MD = $(firstword $(shell which mkdir)) $(V) CHM = $(firstword $(shell which chmod)) -c CHO = $(firstword $(shell which chown)) -c # ### LOCAL PATHS WORK = . SRC = $(WORK)/src BIN = $(WORK)/bin # ### LOCAL VARS BINEXT = .sh .awk .pl .pm GFF2APLOT = gff2aplot.pl PARSEBLAST = parseblast.pl BLAT2GFF = blat2gff.pl SIM2GFF = sim2gff.pl ALI2GFF = ali2gff ALI2GFFD = $(SRC)/ali2gff SRCCODE = $(GFF2APLOT) $(PARSEBLAST) \ $(BLAT2GFF) $(SIM2GFF) $(ALI2GFF) BINCODE = $(addprefix $(BIN)/, $(SRCCODE)) # ### MAKE RULES all: header main trailer test : @echo "### SORRY !!! Tests were not implemented yet..."; install : header installbin trailer forceall : header cleanbin main trailer clean : header cleanbin trailer cleanall : header cleanbin trailer cleanbin : -@$(RM) -f $(wildcard $(BIN)/*); main : $(BINCODE) @$(CHM) 755 $^; installbin : $(BINCODE) @echo "### COPYING BIN FILES TO $(INSTALLDIR)..."; @$(CP) -p $^ $(INSTALLDIR)/; # ### FINISHING CODE $(addprefix $(BIN)/, $(ALI2GFF)) : $(addprefix $(ALI2GFFD)/, $(ALI2GFF)) @${CP} $(addprefix $(ALI2GFFD)/, $(ALI2GFF)) \ $(addprefix $(BIN)/, $(ALI2GFF)) $(addprefix $(ALI2GFFD)/, $(ALI2GFF)) : $(addprefix $(addprefix $(ALI2GFFD)/, $(ALI2GFF)), .h .c) @echo "### Making ALI2GFF..." @cd $(ALI2GFFD); \ $(MAKE) -f ./Makefile; $(addprefix $(BIN)/, %.sh) : $(addprefix $(SRC)/, %.sh) @echo "### Finishing BASH script from \"$<\" -> \"$@\"" ; @( echo "#!$(BASH)"; cat $< ) > $@; $(addprefix $(BIN)/, %.awk) : $(addprefix $(SRC)/, %.awk) @echo "### Finishing GAWK script from \"$<\" -> \"$@\"" ; @( echo "#!$(GAWK) -f"; cat $< ) > $@; $(addprefix $(BIN)/, %.pl) : $(addprefix $(SRC)/, %.pl) @echo "### Finishing PERL script from \"$<\" -> \"$@\"" ; @( echo "#!$(PERL) -w"; cat $< ) > $@; $(addprefix $(BIN)/, %.pm) : $(addprefix $(SRC)/, %.pm) @echo "### Finishing PERL module from \"$<\" -> \"$@\"" ; @$(CP) -u $< $@ ; isexec : $(BINCODE) @$(CHM) 755 $<; # ### INFO RULES info : header getinfo trailer getinfo : @echo "### BASH ### $(BASH) ### $(BASHV)"; @echo "### GAWK ### $(GAWK) ### $(GAWKV)"; @echo "### PERL ### $(PERL) ### $(PERLV)"; header : @echo "###"; @echo "### RUNNING MAKEFILE"; @echo "###"; @echo "### $(DATE) -- $(USER)"; @echo "###"; trailer : @echo "###"; @echo "### MAKEFILE DONE..."; @echo "###"; gff2aplot-2.0.orig/bin/0000775000000000000000000000000007667662604014731 5ustar rootroot00000000000000gff2aplot-2.0.orig/src/0000755000000000000000000000000010220353535014721 5ustar rootroot00000000000000gff2aplot-2.0.orig/src/gff2aplot.pl0000644000000000000000000061207607667662604017203 0ustar rootroot00000000000000# # %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% # % GFF2APLOT % # %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% # # Converting alignments in GFF format to PostScript dotplots. # # Copyright (C) 1999-2003 - Josep Francesc ABRIL FERRANDO # Thomas WIEHE # Roderic GUIGO SERRA # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; if not, write to the Free Software # Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA. # # %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% # # $Id: gff2aplot.nw,v 1.35 2003/03/04 18:05:30 jabril Exp $ # # # MODULES # use strict; use vars qw/ $T $F $n $c %Messages %DefaultVars %CmdLineVars %CustomVars %Defaults %Vars %GFF_DATA %ALN_DATA %Order $PROGRAM $VERSION $REVISION $REVISION_DATE $LAST_UPDATE %VarKeys $noCV %TESTS %Ribbons %Shapes %GroupShapes %LineStyles %TextAlign %Fonts %FORMATS $formats %COLORS $colors %GRADIENTS %UNITS %USED $kilo $mega $giga $cm2pt $mm2pt $in2pt %SpecialVars %SpecialCache $GFF $GFF_NOGP $VECTOR $ALIGN $APLOT $APLOT_NOGP $noGFF $aln_COUNT $seq_COUNT $_counter $_prop $_element $_order $_elemNum $_ori $_end $_flw $_glw $_mnsco $_mxsco $_nori $_nend $_fttype $_ftprop $_ftname $_ftid $_ftori $_ftend $_ftsco $_ftfrm $_ftnori $_ftnend $_ftnsco $_ftnfrm %StringCache $regexp_natural $regexp_integer $regexp_float $regexp_real $gradregex $regexp_frame $regexp_strand $regexp_group /; # $SIG{HUP} = \&trap_signals_prog; $SIG{ABRT} = \&trap_signals; $SIG{INT} = \&trap_signals; $SIG{QUIT} = \&trap_signals; $SIG{TERM} = \&trap_signals; $SIG{KILL} = \&trap_signals; $SIG{CHLD} = 'IGNORE'; # use Getopt::Long; Getopt::Long::Configure qw/ bundling /; use Data::Dumper; local $Data::Dumper::Purity = 0; local $Data::Dumper::Deepcopy = 1; use Benchmark; my @Timer = ( new Benchmark ); # # CONSTANTS # ($PROGRAM,$VERSION,$REVISION,$REVISION_DATE,$LAST_UPDATE) = ( 'gff2aplot', 'v2.0', '$Revision: 1.35 $', #' '$Date: 2003/03/04 18:05:30 $', #' '$Id: gff2aplot.nw,v 1.35 2003/03/04 18:05:30 jabril Exp $', #' ); $REVISION =~ s/\$//og; $REVISION_DATE =~ s/\$//og; ( $T, $F ) = ( 1, 0 ); # for 'T'rue and 'F'alse $noCV = '?'; %VarKeys = ( L => 'LAYOUT', Q => 'SEQUENCE', S => 'SOURCE', T => 'STRAND', G => 'GROUP', F => 'FEATURE', X => 'EXTRA', ); ( $cm2pt, $mm2pt, $in2pt ) = ( 28.35, 2.835, 72 ); ( $kilo, $mega, $giga ) = ( 10**3, 10**6, 10**9 ); $regexp_natural = '^\d+$'; #' $regexp_integer = '^[+-]?\d+$'; #' $regexp_float = '^[+-]?(?:\d+(?:\.\d*)?|\.\d+)$'; #' $regexp_real = '^([+-]?)(?=\d|\.\d)\d*(\.\d*)?([Ee]([+-]?\d+))?$'; #' $gradregex = '(gradient|rainbow)'; my $torad = 3.1415926535898 / 180; ( $GFF, $GFF_NOGP, $VECTOR, $ALIGN, $APLOT, $APLOT_NOGP, $noGFF ) = qw/ X x V A O o ? /; $regexp_frame = '^[.0123]$'; #' Accepting blast-formated frames (.123) $regexp_strand = '^[\.\+\-]$'; #' $regexp_group = '^(.*?)(?:"(.+?)"(?:\s+(.+))?)?$'; #' my $Error = "\<\<\< ERROR \>\>\> "; my $Warn = "\<\<\< WARNING \>\>\> "; my $spl = "\<\<\<\-\-\-\-\-\-\-\-\-\>\>\>\n"; my $spw = "\<\<\< \>\>\> "; my $line = ( "#" x 80 ) . "\n"; my $sp = "###\n"; # # VARIABLES # my $Custom_path = defined( $ENV{GFF2APLOT_CUSTOMPATH} ) ? $ENV{GFF2APLOT_CUSTOMPATH} : '.'; my $Custom_file = defined( $ENV{GFF2APLOT_CUSTOMFILE} ) ? $ENV{GFF2APLOT_CUSTOMFILE} : '.gff2aplotrc'; $Custom_path =~ s{/$}{}o; my ( $Debug, $Verbose, $Quiet, $LogFile, $logs_filename ) = ( $F, $F, $F, $F, undef ); my ( @data_files, $file ); my @custom_files = (); my $ExtraCustomFlg = $T; %TESTS = ( BOOLEAN => sub { # Value, varName, Lowercase my ( $_v, $_n, $_l ) = @_; $_l =~ /^(1|on|t(rue)|y(es))$/o && ( $$_v = $T, return $T ); $_l =~ /^(0|off|f(alse)|n(o))$/o && ( $$_v = $F, return $T ); &warn( 'NOT_A_BOOLEAN', $F, $_n ); return $F; }, ALPHA => sub { # Value, varName my ( $_v, $_n, undef ) = @_; $$_v = lc($$_v); $$_v =~ /^[a-z][a-z_0-9]*$/o && return $T; &warn( 'NOT_ALPHA', $F, $_n ); return $F; }, STRING => sub { # Value my ( $_v, undef, undef ) = @_; defined($$_v) && do { $$_v =~ s{[\\]}{\\134}og; $$_v =~ s{[\(]}{\\050}og; $$_v =~ s{[\)]}{\\051}og; }; return $T; }, NATURAL => sub { # Value, varName my ( $_v, $_n, undef ) = @_; $$_v =~ /$regexp_natural/o && return $T; &warn( 'NOT_A_NATURAL', $F, $_n ); return $F; }, INTEGER => sub { # Value, varName my ( $_v, $_n, undef ) = @_; $$_v =~ /$regexp_integer/o && return $T; &warn( 'NOT_AN_INTEGER', $F, $_n ); return $F; }, FLOAT => sub { # Value, varName my ( $_v, $_n, undef ) = @_; $$_v =~ /$regexp_float/o && return $T; &warn( 'NOT_A_FLOAT', $F, $_n ); return $F; }, REAL => sub { # Value, varName my ( $_v, $_n, undef ) = @_; $$_v =~ /$regexp_real/o && return $T; &warn( 'NOT_A_REAL', $F, $_n ); return $F; }, COLOR => sub { # Value, varName, Lowercase my ( $_v, $_n, $_l ) = @_; $_l =~ /^b(ack)?g(round)?(color)?/o && ( $$_v = 'bg', return $T ); $_l =~ /^f(ore)?g(round)?(color)?/o && ( $$_v = 'fg', return $T ); defined( $COLORS{$_l} ) && do { $$_v = $_l; defined( $USED{'COLORS'}{$_l} ) || ( $USED{'COLORS'}{$_l} = $COLORS{$_l}->[0] ); return $T; }; # defined &warn( 'NOT_A_COLOR', $F, $_l, $_n ); return $F; }, EXTCOLOR => sub { # Value, varName, Lowercase my $maxcolornum = 6; my ( $_v, $_n, $_l ) = @_; my ( $_vt, $_lt, @_cl, @_ll, $_t ); $_l =~ /^(.*)$gradregex$/ && do { $_vt = defined($1) ? $1 : ''; $_lt = defined($2) ? $2 : ''; defined( $GRADIENTS{$_lt} ) && do { defined( $USED{'GRADIENTS'}{$_lt} ) || ( $USED{'GRADIENTS'}{$_lt} = $_vt ); if ( $_lt eq 'rainbow' ) { $$_v = $_lt; } else { $_vt =~ s/\s*$//og; @_cl = split /\s+|_/o, $_vt; @_ll = (); for ( my $l = 0 ; ( $l <= $#_cl && $l < $maxcolornum ) ; $l++ ) { $_t = ''; $TESTS{COLOR}->( \$_t, $_n, $_cl[$l] ) && ( push @_ll, $_t ); } scalar(@_ll) > 0 || ( push @_ll, 'fg' ); $$_v = join ( " ", @_ll, scalar(@_ll), $_lt ); } return $T; }; # defined &warn( 'NOT_A_GRADIENT', $F, $_l, $_n ); return $F; }; return $TESTS{COLOR}->( $_v, $_n, $_l ); }, CMYKFLOAT => sub { # Value, varName, Lowercase my ( $_v, $_n, undef ) = @_; ( $$_v =~ /$regexp_float/o && ( $$_v >= 0 && $$_v <= 1 ) ) && return $T; &warn( 'NOTCMYKFLOAT', $F, $_n, $$_v ); return $F; }, FONT => sub { # Value, varName, Lowercase my ( $_v, $_n, $_l ) = @_; defined( $Fonts{$_l} ) && ( $$_v = $_l, return $T ); &warn( 'NOT_A_FONT', $F, $$_v, $_n ); return $F; }, BBOX => sub { # Value, varName, Lowercase my ( $_v, $_n, $_l ) = @_; my @it = (); @it = split /,/o, $_l; scalar(@it) != 2 && do { &warn( 'BBOX_NOTOK', $F, $_n, $_l, $_n ); return $F; }; # not enough params $TESTS{PS_UNIT}->( \$it[0], $_n, $it[0] ) || return $F; $TESTS{PS_UNIT}->( \$it[1], $_n, $it[1] ) || return $F; $$_v = [ 'userdef', @it ]; return $T; }, PAGE => sub { # Value, varName, Lowercase my ( $_v, $_n, $_l ) = @_; defined( $FORMATS{$_l} ) && do { $$_v = $_l; defined( $USED{'FORMATS'}{$_l} ) || ( $USED{'FORMATS'}{$_l} = $FORMATS{$_l}->[0] ); return $T; }; &warn( 'NOT_A_PAGE', $F, $_l, $$_v ); return $F; }, SEQ_UNIT => sub { # Value, varName, Lowercase my ( $_v, $_n, $_l ) = @_; my $q = undef; $_l =~ /^\.$|^\s*$/o && do { &warn( 'NOT_A_NUMBER', $F, $_n ); return $F; }; $_l =~ s/(?:\.)? (?:(g(?:iga)?|m(?:ega)?|k(?:ilo)?)? b(?:ase)? (?:p(?:air)?)? (?:s)?)$ //ox && ( $q = $1 ); defined($q) || do { $_l =~ /[^\d]+$/o && do { &warn( 'NOT_A_DNAUNIT', $F, $_n, $$_v ); return $F; }; $q = ''; }; $TESTS{FLOAT}->( \$_l, $_n, $_l ) || return $F; ( $q, undef ) = split //o, $q, 2; $q .= 'bp'; $$_v = [ $_l, $q ]; return $T; }, PS_UNIT => sub { # Value, varName, Lowercase my ( $_v, $_n, $_l ) = @_; my $q = undef; $_l =~ /^\.$|^\s*$/o && do { &warn( 'NOT_A_NUMBER', $F, $_n ); return $F; }; PSLEN: { $_l =~ s/m(eter(s)?)?$//o && do { $_l =~ s/(\.)?c(enti)?$//o && ( $q = 'cm', last PSLEN ); $_l =~ s/(\.)?m(ili)?$//o && ( $q = 'mm', last PSLEN ); last PSLEN; }; $_l =~ s/(\.)?in(ch(es)?)?$//o && ( $q = 'in', last PSLEN ); $_l =~ s/(\.)?(pt|point(s)?)$//o && ( $q = 'pt' ); }; # PSLEN defined($q) || do { $_l =~ /[^\d]+$/o && do { &warn( 'NOT_A_PSUNIT', $F, $_n, $$_v ); return $F; }; $q = 'pt'; }; $TESTS{FLOAT}->( \$_l, $_n, $_l ) || return $F; $$_v = [ $_l, $q ]; return $T; }, RANGE => sub { # Value, varName, Lowercase my ( $_v, $_n, $_l ) = @_; my @it = (); @it = split /\.\./o, $_l; scalar(@it) != 2 && do { &warn( 'RANGE_NOTOK', $F, $_n, $$_v, $_n ); return $F; }; # not enough params $it[0] eq '*' || do { $TESTS{FLOAT}->( \$it[0], $_n, $it[0] ) || return $F; }; # $it[0] -> lower-value $it[1] eq '*' || do { $TESTS{FLOAT}->( \$it[1], $_n, $it[1] ) || return $F; }; # $it[1] -> upper-value $$_v = [ $it[0] eq '*' ? undef: $it[0], $it[1] eq '*' ? undef: $it[1], ]; return $T; }, PSRANGE => sub { # Value, varName, Lowercase my ( $_v, $_n, $_l ) = @_; my @it = (); @it = split /\.\./o, $_l; scalar(@it) != 2 && do { &warn( 'RANGE_NOTOK', $F, $_n, $$_v, $_n ); return $F; }; # not enough params $it[0] eq '*' || do { $TESTS{PS_UNIT}->( \$it[0], $_n, $it[0] ) || return $F; }; # $it[0] -> lower-value $it[1] eq '*' || do { $TESTS{PS_UNIT}->( \$it[1], $_n, $it[1] ) || return $F; }; # $it[1] -> upper-value $$_v = [ $it[0] eq '*' ? undef: [ @{ $it[0] } ], $it[1] eq '*' ? undef: [ @{ $it[1] } ] ]; return $T; }, SEQRANGE => sub { # Value, varName, Lowercase my ( $_v, $_n, $_l ) = @_; my @it = (); @it = split /\.\./o, $_l; scalar(@it) != 2 && do { &warn( 'RANGE_NOTOK', $F, $_n, $$_v, $_n ); return $F; }; # not enough params $it[0] eq '*' || do { $TESTS{SEQ_UNIT}->( \$it[0], $_n, $it[0] ) || return $F; }; # $it[0] -> lower-value $it[1] eq '*' || do { $TESTS{SEQ_UNIT}->( \$it[1], $_n, $it[1] ) || return $F; }; # $it[1] -> upper-value $$_v = [ $it[0] eq '*' ? undef: [ @{ $it[0] } ], $it[1] eq '*' ? undef: [ @{ $it[1] } ] ]; return $T; }, LINESTY => sub { # Value, varName, Lowercase my ( $_v, $_n, $_l ) = @_; ( defined($$_v) && defined( $LineStyles{$_l} ) ) && ( $$_v = $_l, return $T ); &warn( 'LINESTY_NOTOK', $F, $$_v, $_n ); return $F; }, RIBBON => sub { # Value, varName, Lowercase my ( $_v, $_n, $_l ) = @_; ( defined($$_v) && defined( $Ribbons{$_l} ) ) && ( $$_v = $_l, return $T ); &warn( 'RIBBON_NOTOK', $F, $$_v, $_n ); return $F; }, SHAPE => sub { # Value, varName, Lowercase my ( $_v, $_n, $_l ) = @_; ( defined($$_v) && defined( $Shapes{$_l} ) ) && ( $$_v = $_l, return $T ); &warn( 'SHAPE_NOTOK', $F, $$_v ); return $F; }, GPSHAPE => sub { # Value, varName, Lowercase my ( $_v, $_n, $_l ) = @_; ( defined($$_v) && defined( $GroupShapes{$_l} ) ) && ( $$_v = $_l, return $T ); &warn( 'GRP_SHAPE_NOTOK', $F, $$_v ); return $F; }, TXTALIGN => sub { # Value, varName, Lowercase, flag my ( $_v, $_n, $_l, $a_flg ) = @_; ( defined($$_v) && defined( $TextAlign{ ( $a_flg ? 'H' : 'V' ) }{$_l} ) ) && ( $$_v = $_l, return $T ); &warn( 'ALIGN_NOTOK', $F, $_n, $$_v ); return $F; }, STRAND => sub { # Value, varName, Lowercase my ( $_v, $_n, undef ) = @_; $$_v =~ /$regexp_strand/o && return $T; &warn( 'NOT_A_STRAND', $F, $$_v, $_n ); return $F; }, ); %UNITS = ( "pt" => sub ($) { return $_[0] }, "mm" => sub ($) { return $_[0] * $mm2pt }, "cm" => sub ($) { return $_[0] * $cm2pt }, "in" => sub ($) { return $_[0] * $in2pt }, "bp" => sub ($) { return $_[0] }, "kbp" => sub ($) { return $_[0] * $kilo }, "mbp" => sub ($) { return $_[0] * $mega }, "gbp" => sub ($) { return $_[0] * $giga }, ); %Fonts = ( # serif 'default' => '/Times-Roman', 'times' => '/Times-Roman', 'times-roman' => '/Times-Roman', 'times-italic' => '/Times-Italic', 'times-bold' => '/Times-Bold', 'times-bolditalic' => '/Times-BoldItalic', # sans serif 'helvetica' => '/Helvetica', 'helvetica-oblique' => '/Helvetica-Oblique', 'helvetica-bold' => '/Helvetica-Bold', 'helvetica-boldoblique' => '/Helvetica-BoldOblique', # monospaced 'courier' => '/Courier', 'courier-oblique' => '/Courier-Oblique', 'courier-bold' => '/Courier-Bold', 'courier-boldoblique' => '/Courier-BoldOblique', ); %LineStyles = ( 's' => 'solid', 'solid' => 'solid', 'd' => 'dotted', 'dotted' => 'dotted', 'ld' => 'ldotted', 'long_dotted' => 'ldotted', 'l' => 'dashed', 'dashed' => 'dashed', 'll' => 'ldashed', 'long_dashed' => 'ldashed', 'dd' => 'ddashed', 'dashed_dotted' => 'ddashed', ); # %LineStyles %Ribbons = ( # shw lns 'n' => [ $F, $F ], 'none' => [ $F, $F ], 'l' => [ $F, $T ], 'lines' => [ $F, $T ], 'r' => [ $T, $F ], 'ribbons' => [ $T, $F ], 'b' => [ $T, $T ], 'both' => [ $T, $T ], ); # %Ribbons %Shapes = ( 'none' => 'pt', 'box' => 'fbox', 'half_box' => 'hbox', 'diamond' => 'fdmd', 'sand_clock' => 'fmdm', 'arrow' => 'fraw', 'right_arrow' => 'fraw', 'half_arrow' => 'hraw', 'half_right_arrow' => 'hraw', 'left_arrow' => 'flaw', 'half_left_arrow' => 'hlaw', 'arrow_end' => 'frae', 'right_arrow_end' => 'frae', 'half_arrow_end' => 'hrae', 'half_right_arrow_end' => 'hrae', 'left_arrow_end' => 'flae', 'half_left_arrow_end' => 'hlae', 'single' => 'frsg', 'right_single' => 'frsg', 'half_single' => 'hrsg', 'half_right_single' => 'hrsg', 'left_single' => 'flsg', 'half_left_single' => 'hlsg', 'triangle' => 'frtn', 'right_triangle' => 'frtn', 'half_triangle' => 'hrtn', 'half_right_triangle' => 'hrtn', 'left_triangle' => 'fltn', 'half_left_triangle' => 'hltn', 'triangle_up' => 'futn', 'triangle_down' => 'fdtn', 'circle' => 'fcir', 'arc' => 'farc', 'half_arc' => 'harc', ); # %Shapes %GroupShapes = ( 'none' => 'pt', 'line' => 'glns', 'dotted_line' => 'glnd', 'bracket' => 'gbrk', 'curly_bracket' => 'gbrc', 'segment' => 'gsgm', 'segment_dotted' => 'gsgd', 'arrow' => 'gfaw', 'stroked_arrow' => 'gsaw', 'filled_arrow' => 'gfaw', 'stroked_arrow_dotted' => 'gsad', 'filled_arrow_dotted' => 'gfad', 'half_arrow' => 'ghaw', 'half_filled_arrow' => 'ghaw', 'half_filled_arrow_dotted' => 'ghad', 'half_stroked_arrow' => 'ghsw', 'half_stroked_arrow_dotted' => 'ghsd', ); # %GroupShapes %TextAlign = ( H => { 'l' => 'lh', 'left' => 'lh', 'c' => 'ch', 'center' => 'ch', 'r' => 'rh', 'right' => 'rh', }, V => { 't' => 'tv', 'top' => 'tv', 'c' => 'cv', 'center' => 'cv', 'b' => 'bv', 'bottom' => 'bv', }, ); # %TextAlign %SpecialVars = ( font => sub { my ( $cstr, $cflg ) = @_; my @fld; $cflg || do { &warn( 'CANNOTDEFNOW', $F, 'CUSTOM FONT ALIAS', $cstr ); return $F; }; # $cflg @fld = split /\s+/o, $cstr; ( defined( $fld[0] ) && defined( $fld[1] ) ) || do { &warn( 'WRONGSPECREC', $F, 'FONT', 2, 'font ' ); return $F; }; # defined $fld[1] =~ s{^/}{}o; $Fonts{ 'my_' . $fld[0] } = '/' . $fld[1]; return $T; }, # font color => sub { my ( $cstr, $cflg ) = @_; my @fld; my $_n = 'Special Features [CMYK COLOR] '; $cflg || do { &warn( 'CANNOTDEFNOW', $F, 'CUSTOM CMYK COLOR', $cstr ); return $F; }; # $cflg @fld = split /\s+/o, $cstr; scalar(@fld) < 5 && do { &warn( 'WRONGSPECREC', $F, 'CMYK COLOR', 5, 'color ' ); return $F; }; # defined # CMYKFLOAT checking color amount between 0..1 $TESTS{CMYKFLOAT}->( \$fld[1], $_n . '(cyan)', $fld[1] ) || return $F; $TESTS{CMYKFLOAT}->( \$fld[2], $_n . '(magenta)', $fld[2] ) || return $F; $TESTS{CMYKFLOAT}->( \$fld[3], $_n . '(yellow)', $fld[3] ) || return $F; $TESTS{CMYKFLOAT}->( \$fld[4], $_n . '(black)', $fld[4] ) || return $F; $COLORS{ ( 'my_' . $fld[0] ) } = [ ++$colors, @fld[ 1 .. 5 ] ]; return $T; }, # color box => sub { my ( $cstr, undef ) = @_; my ( @fld, @tld ); my $_n = 'Special Features [BOX] '; @fld = split /\s+/o, $cstr, 5; scalar(@fld) < 4 && do { &warn( 'WRONGSPECREC', $F, 'BOX', 4, 'box [ L: ] ' . '[ S: ] [ W: ] [ F: ] [ K: ]' ); return $F; }; # defined $TESTS{SEQ_UNIT}->( \$fld[0], $_n . '(Xori)', lc( $fld[0] ) ) || return $F; $TESTS{SEQ_UNIT}->( \$fld[1], $_n . '(Xend)', lc( $fld[1] ) ) || return $F; $TESTS{SEQ_UNIT}->( \$fld[2], $_n . '(Yori)', lc( $fld[2] ) ) || return $F; $TESTS{SEQ_UNIT}->( \$fld[3], $_n . '(Yend)', lc( $fld[3] ) ) || return $F; @tld = &get_spfeat_props( $fld[4], $F, $T, $_n ); ( $tld[2] =~ /$gradregex/o ) && ( $tld[2] = "$tld[11] $tld[2]" ); ( $tld[5] =~ /$gradregex/o ) && ( $tld[5] = "$tld[11] $tld[5]" ); push @{ $SpecialCache{PRE} }, [ &get_units( \@{ $fld[0] } ), &get_units( \@{ $fld[1] } ), &get_units( \@{ $fld[2] } ), &get_units( \@{ $fld[3] } ), join ( " ", @tld[ 2, 4, 3, 5 ], &get_units( \@{ $fld[0] } ), &get_units( \@{ $fld[1] } ), &get_units( \@{ $fld[2] } ), &get_units( \@{ $fld[3] } ) ) . " xbox" ]; return $T; }, # box circle => sub { my ( $cstr, undef ) = @_; my ( @fld, @tld ); my $_n = 'Special Features [CIRCLE] '; @fld = split /\s+/o, $cstr, 5; scalar(@fld) < 4 && do { &warn( 'WRONGSPECREC', $F, 'CIRCLE', 4, 'circle ' . '[ A: ] [ L: ] [ S: ] ' . '[ W: ] [ F: ] [ K: ]' ); return $F; }; # defined $TESTS{SEQ_UNIT}->( \$fld[0], $_n . '(Cx)', lc( $fld[0] ) ) || return $F; $TESTS{SEQ_UNIT}->( \$fld[1], $_n . '(Cy)', lc( $fld[1] ) ) || return $F; $TESTS{SEQ_UNIT}->( \$fld[2], $_n . '(Rx)', lc( $fld[2] ) ) || return $F; $TESTS{SEQ_UNIT}->( \$fld[3], $_n . '(Ry)', lc( $fld[3] ) ) || return $F; @tld = &get_spfeat_props( $fld[4], $F, $T, $_n ); ( $tld[2] =~ /$gradregex/o ) && ( $tld[2] = "$tld[11] $tld[2]" ); ( $tld[5] =~ /$gradregex/o ) && ( $tld[5] = "$tld[11] $tld[5]" ); push @{ $SpecialCache{PRE} }, [ &get_units( \@{ $fld[0] } ), &get_units( \@{ $fld[0] } ), &get_units( \@{ $fld[1] } ), &get_units( \@{ $fld[1] } ), join ( " ", @tld[ 2, 4, 3, 5 ], &get_units( \@{ $fld[2] } ), &get_units( \@{ $fld[3] } ), $tld[1], &get_units( \@{ $fld[0] } ), &get_units( \@{ $fld[1] } ) ) . " xcir" ]; return $T; }, # circle arrow => sub { my ( $cstr, undef ) = @_; my ( @fld, @tld ); my $_n = 'Special Features [ARROW] '; @fld = split /\s+/o, $cstr, 4; scalar(@fld) < 3 && do { &warn( 'WRONGSPECREC', $F, 'ARROW', 3, 'arrow [ A: ] ' . '[ L: ] [ S: ] [ W: ] ' . '[ N: ] [ Z: ] [ H: ] ' . '[ V: ] [ T: ] [ "" ]' ); return $F; }; # defined $TESTS{SEQ_UNIT}->( \$fld[0], $_n . '(Cx)', lc( $fld[0] ) ) || return $F; $TESTS{SEQ_UNIT}->( \$fld[1], $_n . '(Cy)', lc( $fld[1] ) ) || return $F; $TESTS{PS_UNIT}->( \$fld[2], $_n . '(length)', lc( $fld[2] ) ) || return $F; @tld = &get_spfeat_props( $fld[3], $T, $T, $_n ); ( $tld[2] =~ /$gradregex/o ) && ( $tld[2] = "$tld[11] $tld[2]" ); $tld[0] ne '' || ( $tld[0] = '( )' ); push @{ $SpecialCache{POST} }, [ &get_units( \@{ $fld[0] } ), &get_units( \@{ $fld[0] } ), &get_units( \@{ $fld[1] } ), &get_units( \@{ $fld[1] } ), '[ ' . join ( " ", @tld[ 0, 6 .. 10, 2, 4 ], &get_units( \@{ $fld[2] } ), $tld[1], &get_units( \@{ $fld[0] } ), &get_units( \@{ $fld[1] } ) ) . " xarw" ]; return $T; }, # arrow text => sub { my ( $cstr, undef ) = @_; my ( @fld, @tld ); my $_n = 'Special Features [TEXT] '; @fld = split /\s+/o, $cstr, 3; scalar(@fld) < 2 && do { &warn( 'WRONGSPECREC', $F, 'TEXT', 3, 'text "" [ A: ] ' . '[ N: ] [ Z: ] [ H: ] ' . '[ V: ] [ T: ]' ); return $F; }; # defined $TESTS{SEQ_UNIT}->( \$fld[0], $_n . '(Cx)', lc( $fld[0] ) ) || return $F; $TESTS{SEQ_UNIT}->( \$fld[1], $_n . '(Cy)', lc( $fld[1] ) ) || return $F; @tld = &get_spfeat_props( $fld[2], $T, $F, $_n ); $tld[0] ne '' && do { push @{ $SpecialCache{POST} }, [ &get_units( \@{ $fld[0] } ), &get_units( \@{ $fld[0] } ), &get_units( \@{ $fld[1] } ), &get_units( \@{ $fld[1] } ), '[ ' . join ( " ", @tld[ 1, 0, 6 .. 10 ], &get_units( \@{ $fld[0] } ), &get_units( \@{ $fld[1] } ) ) . " xtxt" ]; return $T; }; &warn( 'EMPTYSTRING', $F, $_n ); return $F; }, # ); my ( $seqname, $source, $feature, $start, $end, $score, $strand, $frame ) ; # GFF temporary vars my ( $seqname_1, $seqname_2, $source_1, $source_2, $feature_1, $feature_2, $start_1, $start_2, $end_1, $end_2, $score_1, $score_2, $strand_1, $strand_2, $frame_1, $frame_2 ); # APLOT temporary vars my ( $tag, $group, $group_id, $label, $group_gff_counter, $group_aplot_counter ); # GROUPING temporary vars ( $_counter, $_prop, $_element ) = ( 0 .. 2 ); ( $_order, $_elemNum, $_ori, $_end, $_mnsco, $_mxsco, $_flw, $_glw, $_nori, $_nend ) = ( 0 .. 9 ); ( $_fttype, $_ftprop, $_ftname, $_ftid, $_ftori, $_ftend, $_ftsco, $_ftfrm, $_ftnori, $_ftnend, $_ftnsco, $_ftnfrm ) = ( 0 .. 11 ); my @vect_ary; my %vect_type = ( 'sco' => 1, 'pos' => 2, 'box' => 3, 'chr' => 0, 'ERROR' => -1 ); my %StrandNum; my $ttt = 0; foreach my $w (qw/ + ++ +- +. .+ . .. .- -. -+ -- - /) { $StrandNum{$w} = $ttt++; }; # foreach $colors = 0; %COLORS = ( # [ ColorNUMBER, qw/ CYAN MAGENTA YELLOW BLACK / ] # black+grey+white black => [ ++$colors, qw/ 0.00 0.00 0.00 1.00 / ], verydeepgrey => [ ++$colors, qw/ 0.00 0.00 0.00 0.90 / ], deepgrey => [ ++$colors, qw/ 0.00 0.00 0.00 0.80 / ], verydarkgrey => [ ++$colors, qw/ 0.00 0.00 0.00 0.70 / ], darkgrey => [ ++$colors, qw/ 0.00 0.00 0.00 0.60 / ], grey => [ ++$colors, qw/ 0.00 0.00 0.00 0.50 / ], lightgrey => [ ++$colors, qw/ 0.00 0.00 0.00 0.40 / ], verylightgrey => [ ++$colors, qw/ 0.00 0.00 0.00 0.30 / ], palegrey => [ ++$colors, qw/ 0.00 0.00 0.00 0.20 / ], verypalegrey => [ ++$colors, qw/ 0.00 0.00 0.00 0.10 / ], white => [ ++$colors, qw/ 0.00 0.00 0.00 0.00 / ], # pink verydeeppink => [ ++$colors, qw/ 0.00 0.60 0.15 0.35 / ], deeppink => [ ++$colors, qw/ 0.00 0.75 0.20 0.15 / ], verydarkpink => [ ++$colors, qw/ 0.00 0.90 0.25 0.00 / ], darkpink => [ ++$colors, qw/ 0.00 0.75 0.30 0.00 / ], pink => [ ++$colors, qw/ 0.00 0.60 0.25 0.00 / ], lightpink => [ ++$colors, qw/ 0.00 0.45 0.20 0.00 / ], verylightpink => [ ++$colors, qw/ 0.00 0.30 0.15 0.00 / ], palepink => [ ++$colors, qw/ 0.00 0.20 0.10 0.00 / ], verypalepink => [ ++$colors, qw/ 0.00 0.10 0.05 0.00 / ], # magenta verydeepmagenta => [ ++$colors, qw/ 0.00 0.60 0.00 0.40 / ], deepmagenta => [ ++$colors, qw/ 0.00 0.75 0.00 0.20 / ], verydarkmagenta => [ ++$colors, qw/ 0.00 0.90 0.00 0.00 / ], darkmagenta => [ ++$colors, qw/ 0.00 0.75 0.00 0.00 / ], magenta => [ ++$colors, qw/ 0.00 0.60 0.00 0.00 / ], lightmagenta => [ ++$colors, qw/ 0.00 0.45 0.00 0.00 / ], verylightmagenta => [ ++$colors, qw/ 0.00 0.30 0.00 0.00 / ], palemagenta => [ ++$colors, qw/ 0.00 0.20 0.00 0.00 / ], verypalemagenta => [ ++$colors, qw/ 0.00 0.10 0.00 0.00 / ], # violet verydeepviolet => [ ++$colors, qw/ 0.30 0.60 0.00 0.40 / ], deepviolet => [ ++$colors, qw/ 0.35 0.75 0.00 0.20 / ], verydarkviolet => [ ++$colors, qw/ 0.45 0.90 0.00 0.00 / ], darkviolet => [ ++$colors, qw/ 0.35 0.75 0.00 0.00 / ], violet => [ ++$colors, qw/ 0.30 0.60 0.00 0.00 / ], lightviolet => [ ++$colors, qw/ 0.22 0.45 0.00 0.00 / ], verylightviolet => [ ++$colors, qw/ 0.15 0.30 0.00 0.00 / ], paleviolet => [ ++$colors, qw/ 0.10 0.20 0.00 0.00 / ], verypaleviolet => [ ++$colors, qw/ 0.05 0.10 0.00 0.00 / ], # blue verydeepblue => [ ++$colors, qw/ 0.60 0.60 0.00 0.40 / ], deepblue => [ ++$colors, qw/ 0.75 0.75 0.00 0.20 / ], verydarkblue => [ ++$colors, qw/ 0.90 0.90 0.00 0.00 / ], darkblue => [ ++$colors, qw/ 0.75 0.75 0.00 0.00 / ], blue => [ ++$colors, qw/ 0.60 0.60 0.00 0.00 / ], lightblue => [ ++$colors, qw/ 0.45 0.45 0.00 0.00 / ], verylightblue => [ ++$colors, qw/ 0.30 0.30 0.00 0.00 / ], paleblue => [ ++$colors, qw/ 0.20 0.20 0.00 0.00 / ], verypaleblue => [ ++$colors, qw/ 0.10 0.10 0.00 0.00 / ], # skyblue verydeepskyblue => [ ++$colors, qw/ 0.60 0.40 0.00 0.40 / ], deepskyblue => [ ++$colors, qw/ 0.75 0.50 0.00 0.20 / ], verydarkskyblue => [ ++$colors, qw/ 0.90 0.60 0.00 0.00 / ], darkskyblue => [ ++$colors, qw/ 0.75 0.50 0.00 0.00 / ], skyblue => [ ++$colors, qw/ 0.60 0.40 0.00 0.00 / ], lightskyblue => [ ++$colors, qw/ 0.45 0.30 0.00 0.00 / ], verylightskyblue => [ ++$colors, qw/ 0.30 0.22 0.00 0.00 / ], paleskyblue => [ ++$colors, qw/ 0.20 0.14 0.00 0.00 / ], verypaleskyblue => [ ++$colors, qw/ 0.10 0.07 0.00 0.00 / ], # cyan verydeepcyan => [ ++$colors, qw/ 0.60 0.00 0.00 0.40 / ], deepcyan => [ ++$colors, qw/ 0.75 0.00 0.00 0.20 / ], verydarkcyan => [ ++$colors, qw/ 0.90 0.00 0.00 0.00 / ], darkcyan => [ ++$colors, qw/ 0.75 0.00 0.00 0.00 / ], cyan => [ ++$colors, qw/ 0.60 0.00 0.00 0.00 / ], lightcyan => [ ++$colors, qw/ 0.45 0.00 0.00 0.00 / ], verylightcyan => [ ++$colors, qw/ 0.30 0.00 0.00 0.00 / ], palecyan => [ ++$colors, qw/ 0.20 0.00 0.00 0.00 / ], verypalecyan => [ ++$colors, qw/ 0.10 0.00 0.00 0.00 / ], # seagreen verydeepseagreen => [ ++$colors, qw/ 0.60 0.00 0.15 0.40 / ], deepseagreen => [ ++$colors, qw/ 0.75 0.00 0.20 0.20 / ], verydarkseagreen => [ ++$colors, qw/ 0.90 0.00 0.25 0.00 / ], darkseagreen => [ ++$colors, qw/ 0.75 0.00 0.30 0.00 / ], seagreen => [ ++$colors, qw/ 0.60 0.00 0.25 0.00 / ], lightseagreen => [ ++$colors, qw/ 0.45 0.00 0.20 0.00 / ], verylightseagreen => [ ++$colors, qw/ 0.30 0.00 0.15 0.00 / ], paleseagreen => [ ++$colors, qw/ 0.20 0.00 0.10 0.00 / ], verypaleseagreen => [ ++$colors, qw/ 0.10 0.00 0.05 0.00 / ], # green verydeepgreen => [ ++$colors, qw/ 0.60 0.00 0.60 0.40 / ], deepgreen => [ ++$colors, qw/ 0.75 0.00 0.75 0.20 / ], verydarkgreen => [ ++$colors, qw/ 0.90 0.00 0.90 0.00 / ], darkgreen => [ ++$colors, qw/ 0.75 0.00 0.75 0.00 / ], green => [ ++$colors, qw/ 0.60 0.00 0.60 0.00 / ], lightgreen => [ ++$colors, qw/ 0.45 0.00 0.45 0.00 / ], verylightgreen => [ ++$colors, qw/ 0.30 0.00 0.30 0.00 / ], palegreen => [ ++$colors, qw/ 0.20 0.00 0.20 0.00 / ], verypalegreen => [ ++$colors, qw/ 0.10 0.00 0.10 0.00 / ], # limegreen verydeeplimegreen => [ ++$colors, qw/ 0.15 0.00 0.60 0.40 / ], deeplimegreen => [ ++$colors, qw/ 0.20 0.00 0.75 0.20 / ], verydarklimegreen => [ ++$colors, qw/ 0.25 0.00 0.90 0.00 / ], darklimegreen => [ ++$colors, qw/ 0.30 0.00 0.75 0.00 / ], limegreen => [ ++$colors, qw/ 0.25 0.00 0.60 0.00 / ], lightlimegreen => [ ++$colors, qw/ 0.20 0.00 0.45 0.00 / ], verylightlimegreen => [ ++$colors, qw/ 0.15 0.00 0.30 0.00 / ], palelimegreen => [ ++$colors, qw/ 0.10 0.00 0.20 0.00 / ], verypalelimegreen => [ ++$colors, qw/ 0.05 0.00 0.10 0.00 / ], # yellow verydeepyellow => [ ++$colors, qw/ 0.00 0.00 0.60 0.40 / ], deepyellow => [ ++$colors, qw/ 0.00 0.00 0.75 0.20 / ], verydarkyellow => [ ++$colors, qw/ 0.00 0.00 0.90 0.00 / ], darkyellow => [ ++$colors, qw/ 0.00 0.00 0.75 0.00 / ], yellow => [ ++$colors, qw/ 0.00 0.00 0.60 0.00 / ], lightyellow => [ ++$colors, qw/ 0.00 0.00 0.45 0.00 / ], verylightyellow => [ ++$colors, qw/ 0.00 0.00 0.30 0.00 / ], paleyellow => [ ++$colors, qw/ 0.00 0.00 0.20 0.00 / ], verypaleyellow => [ ++$colors, qw/ 0.00 0.00 0.10 0.00 / ], # orange verydeeporange => [ ++$colors, qw/ 0.00 0.30 0.80 0.40 / ], deeporange => [ ++$colors, qw/ 0.00 0.32 0.85 0.20 / ], verydarkorange => [ ++$colors, qw/ 0.00 0.35 0.90 0.00 / ], darkorange => [ ++$colors, qw/ 0.00 0.30 0.75 0.00 / ], orange => [ ++$colors, qw/ 0.00 0.25 0.60 0.00 / ], lightorange => [ ++$colors, qw/ 0.00 0.20 0.45 0.00 / ], verylightorange => [ ++$colors, qw/ 0.00 0.15 0.30 0.00 / ], paleorange => [ ++$colors, qw/ 0.00 0.10 0.20 0.00 / ], verypaleorange => [ ++$colors, qw/ 0.00 0.05 0.10 0.00 / ], # red verydeepred => [ ++$colors, qw/ 0.00 0.60 0.60 0.40 / ], deepred => [ ++$colors, qw/ 0.00 0.75 0.75 0.20 / ], verydarkred => [ ++$colors, qw/ 0.00 0.90 0.90 0.00 / ], darkred => [ ++$colors, qw/ 0.00 0.75 0.75 0.00 / ], red => [ ++$colors, qw/ 0.00 0.60 0.60 0.00 / ], lightred => [ ++$colors, qw/ 0.00 0.45 0.45 0.00 / ], verylightred => [ ++$colors, qw/ 0.00 0.30 0.30 0.00 / ], palered => [ ++$colors, qw/ 0.00 0.20 0.20 0.00 / ], verypalered => [ ++$colors, qw/ 0.00 0.10 0.10 0.00 / ], # brown verydeepbrown => [ ++$colors, qw/ 0.35 0.85 0.90 0.35 / ], deepbrown => [ ++$colors, qw/ 0.30 0.75 0.90 0.25 / ], verydarkbrown => [ ++$colors, qw/ 0.25 0.70 0.90 0.15 / ], darkbrown => [ ++$colors, qw/ 0.20 0.60 0.75 0.05 / ], brown => [ ++$colors, qw/ 0.17 0.50 0.65 0.00 / ], lightbrown => [ ++$colors, qw/ 0.15 0.40 0.55 0.00 / ], verylightbrown => [ ++$colors, qw/ 0.12 0.28 0.45 0.00 / ], palebrown => [ ++$colors, qw/ 0.10 0.18 0.30 0.00 / ], verypalebrown => [ ++$colors, qw/ 0.05 0.10 0.20 0.00 / ], ); # %COLORS %GRADIENTS = ( 'gradient' => '/gradient { dup 1 eq { bg 9 4 roll 1 add } if dup dup 1 sub exch 4 mul 3 add 1 roll 4 mul array astore exch dup dup 0 eq exch 1 eq or { 3 -1 roll mul 4 mul cvi 4 getinterval aload pop } { 3 -1 roll 2 copy 5 2 roll mul floor dup 4 1 roll 4 mul cvi 8 getinterval aload pop 9 dict begin /_ku X /_yu X /_mu X /_cu X /_kd X /_yd X /_md X /_cd X 1 exch div 3 -1 roll exch div exch sub /_sc X _cd _cu _cd sub _sc mul add _md _mu _md sub _sc mul add _yd _yu _yd sub _sc mul add _kd _ku _kd sub _sc mul add end } ie } B', 'rainbow' => '/rainbow { dup (-) ne { dup 0.1 le { 0.2 div 0.5 add 1 0 0 } { dup 0.4 le { 1 1 3 -1 roll 0.1 sub 0.3 div sub 0 0 } { dup 0.6 le { 1 0 3 -1 roll 0.4 sub 0.2 div 0 } { dup 0.8 le { 1 exch 0.6 sub 0.2 div sub 0 1 0 } { 0 exch 0.8 sub 0.2 div 1 0 } ie } ie } ie } ie } { pop } ie } B', ); # %GRADIENTS $formats = 0; %FORMATS = ( # [ FormatNUMBER, X(short edge), Y(long edge) ] # A Series a0 => [ ++$formats, 2384, 3370 ], a1 => [ ++$formats, 1684, 2384 ], a2 => [ ++$formats, 1190, 1684 ], a3 => [ ++$formats, 842, 1190 ], a4 => [ ++$formats, 595, 842 ], a5 => [ ++$formats, 420, 595 ], a6 => [ ++$formats, 297, 420 ], a7 => [ ++$formats, 210, 297 ], a8 => [ ++$formats, 148, 210 ], a9 => [ ++$formats, 105, 148 ], a10 => [ ++$formats, 73, 105 ], # B Series b0 => [ ++$formats, 2920, 4127 ], b1 => [ ++$formats, 2064, 2920 ], b2 => [ ++$formats, 1460, 2064 ], b3 => [ ++$formats, 1032, 1460 ], b4 => [ ++$formats, 729, 1032 ], b5 => [ ++$formats, 516, 729 ], b6 => [ ++$formats, 363, 516 ], b7 => [ ++$formats, 258, 363 ], b8 => [ ++$formats, 181, 258 ], b9 => [ ++$formats, 127, 181 ], b10 => [ ++$formats, 91, 127 ], # USA Formats executive => [ ++$formats, 540, 720 ], folio => [ ++$formats, 612, 936 ], legal => [ ++$formats, 612, 1008 ], letter => [ ++$formats, 612, 792 ], quarto => [ ++$formats, 610, 780 ], statement => [ ++$formats, 396, 612 ], '10x14' => [ ++$formats, 720, 1008 ], ledger => [ ++$formats, 1224, 792 ], tabloid => [ ++$formats, 792, 1224 ], ); # %FORMATS # Program status strings. %Messages = ( # ERROR MESSAGES FILE_NO_OPEN => $spl . $Warn . "Cannot Open Current file \"\%s\" . Not used !!!\n" . $spl, USER_HALT => $spl . $Warn . "$PROGRAM has been stopped by user !!!\n" . $spl . $Warn . "---------- Exiting NOW !!! ----------\n" . $spl, PROCESS_HALT => $spl . $Warn . "------- $PROGRAM is down !!! -------\n" . $spl . $Warn . "---------- Exiting NOW !!! ----------\n" . $spl, UNKNOWN_CL_OPTION => $Warn . "Error trapped while processing command-line:\n" . ( " " x 16 ) . "\%s\n", CMD_LINE_ERROR => $spl . $spw . " Please, check your command-line options!!!\n" . $Error . "\n" . $spw . " " . ( "." x 12 ) . " Type \"$PROGRAM -h\" for help.\n" . $spl, SECTION_NOT_DEF => $Warn . "You probably forgot a section header, unable to parse this record.\n", VAR_NOT_DEFINED => $Warn . "\%s variable not defined: \"\%s\" .\n", VARTYPE_NOT_DEFINED => $Error . "Variable type \"\%s\" not defined,\n" . $spw . " could not check value for \"\%s\".\n", BAD_REGEXP => $Warn . "Ill-formed regular expression found in custom file:\n" . $spw . " ---> \%s <---\n", NOT_A_BOOLEAN => $Warn . "\"\%s\" variable requires a boolean value:\n" . $spw . " (ON/OFF, 1/0, TRUE/FALSE, YES/NO)\n", NOT_ALPHA => $Warn . "\"\%s\" variable parameter must fit \"[a-zA-Z][a-zA-Z_0-9]*\"...\n", NOT_A_NATURAL => $Warn . "\"\%s\" variable is not a positive integer.\n", NOT_AN_INTEGER => $Warn . "\"\%s\" variable is NOT an integer.\n", NOT_A_FLOAT => $Warn . "\"\%s\" variable is NOT a decimal number.\n", NOT_A_REAL => $Warn . "\"\%s\" variable is NOT a real number (with exponent).\n", NOT_A_COLOR => $Warn . "\"\%s\" color not defined in \"\%s\" variable.\n", NOT_A_GRADIENT => $Warn . "\"\%s\" gradient color wrongly defined in \"\%s\" variable.\n", NOTCMYKFLOAT => $Warn . "\"\%s\": value must be a float between 0 and 1, \"\%s\" not valid.\n", NOT_A_FONT => $Warn . "Sorry, \"\%s\" font is not defined for \"\%s\".\n", BBOX_NOTOK => $Warn . "CANNOT understand \"\%s\" set as \"\%s\" ...\n" . $spw . " Format must be: \"\%s=,\" \n", NOT_A_PAGE => $Warn . "\"\%s\" page-size is not defined for \"\%s\" variable.\n", NOT_A_NUMBER => $Warn . "\"\%s\" variable needs a number (with or without units).\n", NOT_A_DNAUNIT => $Warn . "\"\%s\" variable requires nucleotide units.\n" . $spw . " \"\%s\" is not valid (units must be in Gb, Mb, Kb, or bases).\n", NOT_A_PSUNIT => $Warn . "\"\%s\" variable requires PostScript units.\n" . $spw . " \"\%s\" is not valid (units must be in points, cm, mm, or inches).\n", RANGE_NOTOK => $Warn . "CANNOT understand \"\%s\" set as \"\%s\" ...\n" . $spw . " Format must be: \"\%s=..\" \n", LINESTY_NOTOK => $Warn . "LINE style \"\%s\" is not defined, setting to \"solid\"...\n", RIBBON_NOTOK => $Warn . "RIBBON style \"\%s\" is not defined, using \"\%s=none\" instead...\n", SHAPE_NOTOK => $Warn . "SHAPE \"\%s\" is not defined, using default shape...\n", GRP_SHAPE_NOTOK => $Warn . "GROUP SHAPE \"\%s\" is not defined, using defaults...\n", SPECIAL_NOT_DEF => $Warn . "Current special feature \"\%s\", NOT recognized, NOT set...\n", CANNOTDEFNOW => $Warn . "\%s \"\%s\", must be defined at the very beginning \n" . $spl . "of the first loaded custom file (within an EXTRA section, \"\# X \#\")...\n", WRONGSPECREC => $Warn . "A \%s special feature record requires \n" . $spl . " at least \%s fields, and must follow this format:\n" . $spl . " \"\%s\"\n", EMPTYSTRING => $Warn . "\"\%s\", contains an EMPTY STRING, skipping...\n", NOT_ENOUGH_FIELDS => $Warn . "Not enough fields in file \"\%s\", line \%s :\n\t\%s\n", ORI_GREATER_END => $Warn . "Start greater than end \"\%s > \%s\" in file \"\%s\" line \"\%s\".\n", STRAND_MISMATCH => $Warn . " Strand mismatch definition \"\%s\" in file \"\%s\" line \"\%s\".\n", FRAME_MISMATCH => $Warn . " Frame mismatch definition \"\%s\" in file \"\%s\" line \"\%s\".\n", NOT_A_STRAND => $Warn . "\"\%s\" STRAND not recognized on \"\%s\"... " . "Must be [+], [.] or [-]\n", # WORKING MESSAGES CHECKING_FILENAMES => $sp . "### Validating INPUT FILENAMES\n" . $sp, READING_FILE => "###---> \"\%s\" exists, including as Input File.\n", READING_STDIN => "###---> Including GFF records from standard input.\n", CHECKING_CMDLN_OPTS => $sp . "### Checking COMMAND-LINE Options\n" . $sp, CHECKING_CMDLN_VARS => $sp . "### Checking Custom Variables SET by COMMAND-LINE\n" . $sp, CHECKING_CUSTOM_NAMES => $sp . "### Validating CUSTOM FILENAMES\n" . $sp, READING_FROM_PATH => "###---> Custom File NOT FOUND in local path: \"\%s\"\n" . "### Trying to find in \"GFF2APLOT_CUSTOMPATH\": \"\%s\"\n", READING_CUSTOM_FILE => "###---> \"\%s\" exists, including as Custom File.\n", NO_CUSTOM_FILES => "###---> NO CUSTOM FILES found. Using program DEFAULTS.\n", CFILE_NOTOPEN => "###---> \"\%s\" NOT FOUND, skipping!!!\n", SETPAGESIZE => "###---> Page size set to \"\%s\" ( \%s )...\n", SETPAGEAXES => "###---> Setting plot AXES: \n### \%s\n### \%s\n### \%s\n", PLOTLIMITS => "###---> SEQUENCE BOUNDARIES selected for this plot:\n" . "### \%s\n### \%s\n", ONZOOM => "###---> SEQUENCE ZOOM that has been choosen:\n" . "### \%s\n### \%s\n", NOZOOM => "###---> SEQUENCE ZOOM is not enabled for this plot...\n", ONZOOMAREA => "###---> ZOOM AREA that is going to be highlighted:\n" . "### \%s\n### \%s\n", NOZOOMAREA => "###---> NO ZOOM AREA was selected for this plot... \n", PLOTSCORES => "###---> SCORE BOUNDARIES selected for this plot:\n" . "### \%s\n### \%s\n", TICKDONE => "###---> TICKMARKS were set: \n" . "### Nucleotide-Scale: \%s\n### Score-Scale: \%s\n", SCALEDONE => "###---> X/Y scale settings are: \n### \%s\n" . "### Are X/Y axes going to have same length ? \%s \n", PSHEADER => "###---> PostScript Header DONE...\n", PSCOLORS => "###---> PostScript Colors Table SET...\n", PSFORMATS => "###---> PostScript Page-formats Table SET...\n", PSVARS => "###---> PostScript Variables SET...\n", PSCODE => "###---> PostScript Functions SET...\n", PSPLOT => "###---> Writting PostScript Page:\n", PSPLOTDONE => "###---> PostScript Page FINISHED...\n", BLOCKRB => "### + drawing \%s ribbons...\n", BLOCKRBL => "### + drawing \%s ribbons outline...\n", BLOCKXY => "### + drawing \%s annotation (\%s)...\n", BLOCKA => "### + drawing alignment features (\%s)...\n", BLOCKFX => "### + drawing special features from custom files...\n", BLOCKTODO => "### + \%s section :\n", BLOCKDONE => "### + \%s section DONE...\n", NOGFFDATA => "### ... \%s GFF elements NOT FOUND !!!\n", NOAPLOTDATA => "### ... Alignment elements NOT FOUND !!!\n", SHOW_VERSION => $sp . "### \%s -- \%s\n" . $sp, READ_CUSTOM_FILE => $sp . "### Reading Customization Parameters from \"\%s\"\n" . $sp, NO_CUSTOM_FOUND => $sp . "### NO CUSTOM FILES found: Using program DEFAULTS.\n" . $sp, READ_GFF_FILE => $sp . "### Reading GFF records from \"\%s\"\n" . $sp, SORT_GFF => "\%sSorting \%s\n", SORT_SEQ => "\%sSequence: \%s\n", SORT_SRC => "\%sSource: \%s\n", SORT_STR => "\%sStrand: \%s\n", SORT_GRP => "\%sGroup: \%s\n", SORT_FTR => "\%s Sorted \%s elements.\n", SORT_GPN => "\%s\`Sorted \%s groups.\n", ); # %Messages my $total_time = 0; my $DATE = localtime; my $USER = defined( $ENV{USER} ) ? $ENV{USER} : 'Child Process'; my $PVER = sprintf( "v%vd", $^V ); %{ $USED{'COLORS'} } = ( 'white' => $COLORS{'white'}->[0], 'black' => $COLORS{'black'}->[0], 'lightred' => $COLORS{'lightred'}->[0], 'verylightgrey' => $COLORS{'verylightgrey'}->[0], 'grey' => $COLORS{'grey'}->[0], 'red' => $COLORS{'red'}->[0], ); %{ $USED{'GRADIENTS'} } = (); %{ $USED{'FORMATS'} } = ( 'a4' => $FORMATS{'a4'}->[0], ); # # MAIN PROGRAM LOOP # # &set_default_vars; %CmdLineVars = (); # Reseting Command-Line OPTIONS &parse_command_line; %SpecialCache = ( # Reseting Special features cache PRE => [], POST => [], ); %CustomVars = (); # Reseting Customization OPTIONS &parse_custom_files; %Vars = (); &merge_custom_vars; %GFF_DATA = %ALN_DATA = (); # Reseting DATA &parse_GFF_files; &map_vars_data; &sort_elements; &set_page_vars; &make_plot; $total_time = &timing($T); &header( "$PROGRAM HAS FINISHED", "[ $total_time ]" ); &close_logfile(); exit(0); # # MAIN FUNCTIONS # sub set_default_vars() { %DefaultVars = ( LAYOUT => { ## '# L #' # PAGE definition page_bbox => { TYPE => 'BBOX', VALUE => undef }, page_size => { TYPE => 'PAGE', VALUE => 'a4' }, # Page MARGINS margin_left => { TYPE => 'PS_UNIT', VALUE => [ 1, 'cm' ] }, margin_right => { TYPE => 'PS_UNIT', VALUE => [ 1, 'cm' ] }, margin_top => { TYPE => 'PS_UNIT', VALUE => [ 1, 'cm' ] }, margin_bottom => { TYPE => 'PS_UNIT', VALUE => [ 1, 'cm' ] }, # Page COLORS background_color => { TYPE => 'COLOR', VALUE => 'white' }, foreground_color => { TYPE => 'COLOR', VALUE => 'black' }, # GLOBAL Labels show_title => { TYPE => 'BOOLEAN', VALUE => $T }, title => { TYPE => 'STRING', VALUE => undef }, # T title_font => { TYPE => 'FONT', VALUE => 'helvetica-bold' }, title_fontsize => { TYPE => 'PS_UNIT', VALUE => [ 24, 'pt' ] }, show_subtitle => { TYPE => 'BOOLEAN', VALUE => $T }, subtitle => { TYPE => 'STRING', VALUE => undef }, # ST subtitle_font => { TYPE => 'FONT', VALUE => 'helvetica' }, subtitle_fontsize => { TYPE => 'PS_UNIT', VALUE => [ 16, 'pt' ] }, show_x_label => { TYPE => 'BOOLEAN', VALUE => $T }, x_label => { TYPE => 'STRING', VALUE => undef }, x_label_font => { TYPE => 'FONT', VALUE => 'helvetica-bold' }, x_label_fontsize => { TYPE => 'PS_UNIT', VALUE => [ 12, 'pt' ] }, show_y_label => { TYPE => 'BOOLEAN', VALUE => $T }, y_label => { TYPE => 'STRING', VALUE => undef }, y_label_font => { TYPE => 'FONT', VALUE => 'helvetica-bold' }, y_label_fontsize => { TYPE => 'PS_UNIT', VALUE => [ 12, 'pt' ] }, show_percent_box_label => { TYPE => 'BOOLEAN', VALUE => $T }, percent_box_label => { TYPE => 'STRING', VALUE => undef }, percent_box_label_font => { TYPE => 'FONT', VALUE => 'helvetica-bold' }, percent_box_label_fontsize => { TYPE => 'PS_UNIT', VALUE => [ 12, 'pt' ] }, show_percent_box_sublabel => { TYPE => 'BOOLEAN', VALUE => $T }, percent_box_sublabel => { TYPE => 'STRING', VALUE => undef }, percent_box_sublabel_font => { TYPE => 'FONT', VALUE => 'helvetica' }, percent_box_sublabel_fontsize => { TYPE => 'PS_UNIT', VALUE => [ 9, 'pt' ] }, show_extra_box_label => { TYPE => 'BOOLEAN', VALUE => $T }, extra_box_label => { TYPE => 'STRING', VALUE => undef }, extra_box_label_font => { TYPE => 'FONT', VALUE => 'helvetica-bold' }, extra_box_label_fontsize => { TYPE => 'PS_UNIT', VALUE => [ 10, 'pt' ] }, show_extra_box_sublabel => { TYPE => 'BOOLEAN', VALUE => $T }, extra_box_sublabel => { TYPE => 'STRING', VALUE => undef }, extra_box_sublabel_font => { TYPE => 'FONT', VALUE => 'helvetica' }, extra_box_sublabel_fontsize => { TYPE => 'PS_UNIT', VALUE => [ 9, 'pt' ] }, x_sequence_coords => { TYPE => 'SEQRANGE', VALUE => undef }, x_sequence_start => { TYPE => 'SEQ_UNIT', VALUE => undef }, x_sequence_end => { TYPE => 'SEQ_UNIT', VALUE => undef }, y_sequence_coords => { TYPE => 'SEQRANGE', VALUE => undef }, y_sequence_start => { TYPE => 'SEQ_UNIT', VALUE => undef }, y_sequence_end => { TYPE => 'SEQ_UNIT', VALUE => undef }, x_sequence_zoom => { TYPE => 'SEQRANGE', VALUE => undef }, x_sequence_zoom_start => { TYPE => 'SEQ_UNIT', VALUE => undef }, x_sequence_zoom_end => { TYPE => 'SEQ_UNIT', VALUE => undef }, y_sequence_zoom => { TYPE => 'SEQRANGE', VALUE => undef }, y_sequence_zoom_start => { TYPE => 'SEQ_UNIT', VALUE => undef }, y_sequence_zoom_end => { TYPE => 'SEQ_UNIT', VALUE => undef }, zoom => { TYPE => 'BOOLEAN', VALUE => $F }, zoom_area => { TYPE => 'BOOLEAN', VALUE => $F }, zoom_marks => { TYPE => 'BOOLEAN', VALUE => $F }, zoom_area_mark_width => { TYPE => 'PS_UNIT', VALUE => [ 2, 'pt' ] }, zoom_area_mark_style => { TYPE => 'LINESTY', VALUE => 'solid' }, zoom_area_mark_color => { TYPE => 'COLOR', VALUE => 'lightred' }, zoom_area_fill_color => { TYPE => 'COLOR', VALUE => undef }, alignment_name => { TYPE => 'STRING', VALUE => undef }, x_sequence_name => { TYPE => 'STRING', VALUE => undef }, y_sequence_name => { TYPE => 'STRING', VALUE => undef }, aplot_xy_same_length => { TYPE => 'BOOLEAN', VALUE => $T }, aplot_xy_scale => { TYPE => 'FLOAT', VALUE => undef }, alignment_scale_width => { TYPE => 'BOOLEAN', VALUE => $F }, alignment_scale_color => { TYPE => 'BOOLEAN', VALUE => $F }, show_ribbons => { TYPE => 'BOOLEAN', VALUE => undef }, ribbon_color_merge => { TYPE => 'BOOLEAN', VALUE => $F }, color_merge_factor => { TYPE => 'FLOAT', VALUE => 0.5 }, ribbon_style => { TYPE => 'RIBBON', VALUE => undef }, ribbon_color => { TYPE => 'COLOR', VALUE => undef }, show_grid => { TYPE => 'BOOLEAN', VALUE => $F }, show_percent_box_grid => { TYPE => 'BOOLEAN', VALUE => $T }, show_percent_box => { TYPE => 'BOOLEAN', VALUE => $F }, show_extra_box => { TYPE => 'BOOLEAN', VALUE => $F }, aplot_box_bgcolor => { TYPE => 'COLOR', VALUE => 'bg' }, percent_box_bgcolor => { TYPE => 'COLOR', VALUE => 'bg' }, extra_box_bgcolor => { TYPE => 'COLOR', VALUE => 'bg' }, percent_box_height => { TYPE => 'PS_UNIT', VALUE => [ -1, 'pt' ] }, extra_box_height => { TYPE => 'PS_UNIT', VALUE => [ -1, 'pt' ] }, show_tickmark_label => { TYPE => 'BOOLEAN', VALUE => $T }, show_only_bottom_ticks => { TYPE => 'BOOLEAN', VALUE => $F }, show_aplot_x_ticks => { TYPE => 'BOOLEAN', VALUE => $T }, show_aplot_y_ticks => { TYPE => 'BOOLEAN', VALUE => $T }, show_percent_x_ticks => { TYPE => 'BOOLEAN', VALUE => $T }, show_percent_y_ticks => { TYPE => 'BOOLEAN', VALUE => $T }, show_extrabox_x_ticks => { TYPE => 'BOOLEAN', VALUE => $T }, show_extrabox_y_ticks => { TYPE => 'BOOLEAN', VALUE => $T }, aplot_major_tickmark => { TYPE => 'INTEGER', VALUE => undef }, aplot_minor_tickmark => { TYPE => 'INTEGER', VALUE => 5 }, aplot_score_range => { TYPE => 'RANGE', VALUE => undef }, percent_major_tickmark => { TYPE => 'INTEGER', VALUE => undef }, percent_minor_tickmark => { TYPE => 'INTEGER', VALUE => 4 }, percent_box_score_range => { TYPE => 'RANGE', VALUE => undef }, extra_major_tickmark => { TYPE => 'INTEGER', VALUE => 2 }, extra_minor_tickmark => { TYPE => 'INTEGER', VALUE => 5 }, extra_box_score_range => { TYPE => 'RANGE', VALUE => undef }, major_tickmark_nucleotide => { TYPE => 'SEQ_UNIT', VALUE => undef }, minor_tickmark_nucleotide => { TYPE => 'SEQ_UNIT', VALUE => undef }, major_tickmark_score => { TYPE => 'FLOAT', VALUE => undef }, minor_tickmark_score => { TYPE => 'FLOAT', VALUE => undef }, show_feature_label => { TYPE => 'BOOLEAN', VALUE => $F }, feature_label_font => { TYPE => 'FONT', VALUE => 'helvetica' }, feature_label_fontsize => { TYPE => 'PS_UNIT', VALUE => [ 6, 'pt' ] }, feature_x_label_length => { TYPE => 'INTEGER', VALUE => undef }, feature_x_label_angle => { TYPE => 'INTEGER', VALUE => 0 }, feature_x_label_rotate => { TYPE => 'BOOLEAN', VALUE => $F }, feature_y_label_length => { TYPE => 'INTEGER', VALUE => undef }, feature_y_label_angle => { TYPE => 'INTEGER', VALUE => 0 }, feature_y_label_rotate => { TYPE => 'BOOLEAN', VALUE => $T }, show_group_label => { TYPE => 'BOOLEAN', VALUE => $T }, group_label_font => { TYPE => 'FONT', VALUE => 'helvetica' }, group_label_fontsize => { TYPE => 'PS_UNIT', VALUE => [ 8, 'pt' ] }, group_x_label_length => { TYPE => 'INTEGER', VALUE => undef }, group_x_label_angle => { TYPE => 'INTEGER', VALUE => 0 }, group_x_label_rotate => { TYPE => 'BOOLEAN', VALUE => $F }, group_y_label_length => { TYPE => 'INTEGER', VALUE => undef }, group_y_label_angle => { TYPE => 'INTEGER', VALUE => 0 }, group_y_label_rotate => { TYPE => 'BOOLEAN', VALUE => $T }, show_ps_warnings => { TYPE => 'BOOLEAN', VALUE => $T }, hide_credits => { TYPE => 'BOOLEAN', VALUE => $F }, align_tag => { TYPE => 'ALPHA', VALUE => 'target' }, vector_tag => { TYPE => 'ALPHA', VALUE => 'vector' }, label_tag => { TYPE => 'ALPHA', VALUE => 'id' }, start_tag => { TYPE => 'ALPHA', VALUE => 'start' }, end_tag => { TYPE => 'ALPHA', VALUE => 'end' }, score_tag => { TYPE => 'ALPHA', VALUE => 'e_value' }, strand_tag => { TYPE => 'ALPHA', VALUE => 'strand' }, frame_tag => { TYPE => 'ALPHA', VALUE => 'frame' }, scotype_tag => { TYPE => 'ALPHA', VALUE => 'vectype' }, window_tag => { TYPE => 'ALPHA', VALUE => 'window' }, step_tag => { TYPE => 'ALPHA', VALUE => 'step' }, scoary_tag => { TYPE => 'ALPHA', VALUE => 'scores' }, }, SEQUENCE => { ## '# Q #' feature_color => { TYPE => 'EXTCOLOR', VALUE => undef }, alignment_color => { TYPE => 'EXTCOLOR', VALUE => undef }, ribbon_color => { TYPE => 'COLOR', VALUE => undef }, }, SOURCE => { ## '# S #' hide => { TYPE => 'BOOLEAN', VALUE => $F }, source_layer => { TYPE => 'INTEGER', VALUE => undef }, feature_color => { TYPE => 'EXTCOLOR', VALUE => undef }, alignment_color => { TYPE => 'EXTCOLOR', VALUE => undef }, ribbon_color => { TYPE => 'COLOR', VALUE => undef }, }, STRAND => { ## '# T #' hide => { TYPE => 'BOOLEAN', VALUE => $F }, strand_layer => { TYPE => 'INTEGER', VALUE => undef }, feature_color => { TYPE => 'EXTCOLOR', VALUE => undef }, alignment_color => { TYPE => 'EXTCOLOR', VALUE => undef }, ribbon_color => { TYPE => 'COLOR', VALUE => undef }, }, GROUP => { ## '# G #' hide => { TYPE => 'BOOLEAN', VALUE => $F }, group_color => { TYPE => 'COLOR', VALUE => 'fg' }, group_shape => { TYPE => 'GPSHAPE', VALUE => 'bracket' }, show_group_limits => { TYPE => 'BOOLEAN', VALUE => $F }, group_label => { TYPE => 'STRING', VALUE => undef }, show_group_label => { TYPE => 'BOOLEAN', VALUE => $T }, # show_group_rule => { TYPE => 'BOOLEAN', VALUE => $T }, # show_group_arrow => { TYPE => 'BOOLEAN', VALUE => $T }, # feature_arrows_color => { TYPE => 'COLOR' , VALUE => 'fg' }, Show_JOINS => { TYPE => 'BOOLEAN', VALUE => $T }, Join_Lines_COLOR => { TYPE => 'COLOR', VALUE => 'fg' }, feature_color => { TYPE => 'EXTCOLOR', VALUE => undef }, alignment_color => { TYPE => 'EXTCOLOR', VALUE => undef }, ribbon_color => { TYPE => 'COLOR', VALUE => undef }, }, FEATURE => { ## '# F #' group_layer => { TYPE => 'INTEGER', VALUE => undef }, hide => { TYPE => 'BOOLEAN', VALUE => $F }, feature_color => { TYPE => 'EXTCOLOR', VALUE => 'lightred' }, alignment_color => { TYPE => 'EXTCOLOR', VALUE => 'fg' }, ribbon_color => { TYPE => 'COLOR', VALUE => 'verylightgrey' }, feature_shape => { TYPE => 'SHAPE', VALUE => 'box' }, feature_label => { TYPE => 'STRING', VALUE => undef }, show_feature_label => { TYPE => 'BOOLEAN', VALUE => $F }, show_ribbons => { TYPE => 'BOOLEAN', VALUE => $F }, ribbon_style => { TYPE => 'RIBBON', VALUE => 'none' }, feature_scale_height => { TYPE => 'BOOLEAN', VALUE => $T }, feature_scale_color => { TYPE => 'BOOLEAN', VALUE => $F }, alignment_scale_width => { TYPE => 'BOOLEAN', VALUE => $F }, alignment_scale_color => { TYPE => 'BOOLEAN', VALUE => $F }, feature_layer => { TYPE => 'INTEGER', VALUE => undef }, # Show_HalfHeightBOX => { TYPE => 'BOOLEAN', VALUE => $T }, # HalfSizeBox_BGCOLOR => { TYPE => 'COLOR' , VALUE => 'DEFAULT' }, # Show_FullHeightBOX => { TYPE => 'BOOLEAN', VALUE => $T }, # FullSizeBox_BGCOLOR => { TYPE => 'COLOR' , VALUE => 'DEFAULT' }, # Show_BOX_LABEL => { TYPE => 'BOOLEAN', VALUE => $T }, # Show_UserDef_BOX_LABEL => { TYPE => 'BOOLEAN', VALUE => $T }, # Show_RIBBON => { TYPE => 'BOOLEAN', VALUE => $T }, # Ribbon_BGCOLOR => { TYPE => 'COLOR' , VALUE => 'DEFAULT' }, Show_GFF => { TYPE => 'BOOLEAN', VALUE => $F }, Show_GFF_ReverseOrder => { TYPE => 'BOOLEAN', VALUE => $F }, Show_FUNCTION => { TYPE => 'BOOLEAN', VALUE => $F }, # APlotLine_GroupScore => { TYPE => 'BOOLEAN', VALUE => $F }, # APlotLine_ScaleWidth => { TYPE => 'BOOLEAN', VALUE => $F }, # APlotLine_ScaleGrey => { TYPE => 'BOOLEAN', VALUE => $F }, Show_SELECTION_BOX => { TYPE => 'BOOLEAN', VALUE => $T }, SelectionBox_BGCOLOR => { TYPE => 'COLOR', VALUE => 'grey' }, Function_COLOR => { TYPE => 'COLOR', VALUE => 'red' }, }, ); # %DefaultVars %Defaults = (); foreach my $sct ( keys %DefaultVars ) { foreach my $vnm ( keys %{ $DefaultVars{$sct} } ) { $Defaults{$sct}{$vnm} = $DefaultVars{$sct}{$vnm}{'VALUE'}; }; # foreach $vnm }; # foreach $sct print LOGFILE ( Data::Dumper->Dump( [ \%DefaultVars ], [qw( *DefaultVars )] ) ) if ( $LogFile && $Debug ); } # set_default_vars sub parse_command_line() { my $cmdln_stdin = undef; for ( my $a = 0 ; $a <= $#ARGV ; $a++ ) { next unless $ARGV[$a] =~ /^-$/o; $cmdln_stdin = $a - $#ARGV; splice( @ARGV, $a, 1 ); } $SIG{__WARN__} = sub { &warn( 'UNKNOWN_CL_OPTION', $T, $_[0] ) }; GetOptions( "v|verbose" => \$Verbose, "V|logs-filename=s" => \$logs_filename, # Print_Report -> LogFile "q|quiet" => \$Quiet, "P|page-bbox" => \$CmdLineVars{LAYOUT}{"page_bbox"}, "p|page-size" => \$CmdLineVars{LAYOUT}{"page_size"}, "margin-left=s" => \$CmdLineVars{LAYOUT}{"margin_left"}, "margin-right=s" => \$CmdLineVars{LAYOUT}{"margin_right"}, "margin-top=s" => \$CmdLineVars{LAYOUT}{"margin_top"}, "margin-bottom=s" => \$CmdLineVars{LAYOUT}{"margin_bottom"}, "B|background-color=s" => \$CmdLineVars{LAYOUT}{"background_color"}, # BACKGROUND_COLOR "F|foreground-color=s" => \$CmdLineVars{LAYOUT}{"foreground_color"}, # FOREGROUND_COLOR "T|title=s" => \$CmdLineVars{LAYOUT}{"title"}, # TITLE "t|subtitle=s" => \$CmdLineVars{LAYOUT}{"subtitle"}, # SUBTITLE "X|x-label=s" => \$CmdLineVars{LAYOUT}{"x_label"}, "Y|y-label=s" => \$CmdLineVars{LAYOUT}{"y_label"}, "L|percent-box-label=s" => \$CmdLineVars{LAYOUT}{"percent_box_label"}, "l|extra-box-label=s" => \$CmdLineVars{LAYOUT}{"extra_box_label"}, "x|x-sequence-coords=s" => \$CmdLineVars{LAYOUT}{"x_sequence_coords"}, "S|start-x-sequence=i" => \$CmdLineVars{LAYOUT} {"x_sequence_start"}, # SEQUENCE1_ORIGIN # Zoom_SEQUENCE1_ORIGIN "E|end-x-sequence=i" => \$CmdLineVars{LAYOUT} {"x_sequence_end"}, # SEQUENCE1_END # Zoom_SEQUENCE1_END "y|y-sequence-coords=s" => \$CmdLineVars{LAYOUT}{"y_sequence_coords"}, "s|start-y-sequence=i" => \$CmdLineVars{LAYOUT} {"y_sequence_start"}, # SEQUENCE2_ORIGIN # Zoom_SEQUENCE2_ORIGIN "e|end-y-sequence=i" => \$CmdLineVars{LAYOUT} {"y_sequence_end"}, # SEQUENCE2_END # Zoom_SEQUENCE2_END "x-sequence-zoom=s" => \$CmdLineVars{LAYOUT}{"x_sequence_zoom"}, "y-sequence-zoom=s" => \$CmdLineVars{LAYOUT}{"y_sequence_zoom"}, "Z|zoom" => \$CmdLineVars{LAYOUT}{"zoom"}, "z|zoom-area" => \$CmdLineVars{LAYOUT}{"zoom_area"}, "A|alignment-name=s" => \$CmdLineVars{LAYOUT}{"alignment_name"}, # Align_NAME "N|x-sequence-name=s" => \$CmdLineVars{LAYOUT}{"x_sequence_name"}, # X-Sequence_NAME "n|y-sequence-name=s" => \$CmdLineVars{LAYOUT}{"y_sequence_name"}, # Y-Sequence_NAME "r|aplot-xy-noteq" => sub { $CmdLineVars{LAYOUT}{"aplot_xy_same_length"} = $F }, "R|aplot-xy-scale=f" => \$CmdLineVars{LAYOUT}{"aplot_xy_scale"}, "W|aln-scale-width" => \$CmdLineVars{LAYOUT} {"alignment_scale_width"}, # APlotLine_ScaleWidth; APlotLine_GroupScore "w|aln-scale-color" => \$CmdLineVars{LAYOUT} {"alignment_scale_color"}, # APlotLine_ScaleGrey; APlotLine_GroupScore "K|show-ribbons=s" => sub { $CmdLineVars{LAYOUT}{"show_ribbons"} = $T; $CmdLineVars{LAYOUT}{"ribbon_style"} = $_[1]; }, "G|show-grid" => \$CmdLineVars{LAYOUT}{"show_grid"}, "g|hide-grid" => sub { $CmdLineVars{LAYOUT}{"show_grid"} = $F }, "I|show-percent-box" => \$CmdLineVars{LAYOUT}{"show_percent_box"}, # Display_PERCENT-BOX "i|hide-percent-box" => sub { $CmdLineVars{LAYOUT}{"show_percent_box"} = $F } , # Display_PERCENT-BOX "O|show-extra-box" => \$CmdLineVars{LAYOUT}{"show_extra_box"}, # Display_EXTRA-BOX "o|hide-extra-box" => sub { $CmdLineVars{LAYOUT}{"show_extra_box"} = $F }, # Display_EXTRA-BOX "D|aplot-box-color=s" => \$CmdLineVars{LAYOUT}{"aplot_box_bgcolor"}, # APlotBox_BqGCOLOR "d|percent-box-color=s" => \$CmdLineVars{LAYOUT}{"percent_box_bgcolor"}, # PercentBox_BGCOLOR "b|extra-box-color=s" => \$CmdLineVars{LAYOUT}{"extra_box_bgcolor"}, # ExtraBox_BGCOLOR "nopswarnings" => sub { $CmdLineVars{LAYOUT}{"show_ps_warnings"} = $F }, "a|hide-credits" => \$CmdLineVars{LAYOUT}{"hide_credits"}, # Show_Credits "debug" => \$Debug, # Dumps Vars -> LogFile "layout-var=s@" => \@{ $CmdLineVars{VARS}{LAYOUT} }, "sequence-var=s@" => \@{ $CmdLineVars{VARS}{SEQUENCE} }, "source-var=s@" => \@{ $CmdLineVars{VARS}{SOURCE} }, "strand-var=s@" => \@{ $CmdLineVars{VARS}{STRAND} }, "group-var=s@" => \@{ $CmdLineVars{VARS}{GROUP} }, "feature-var=s@" => \@{ $CmdLineVars{VARS}{FEATURE} }, "C|custom-filename=s@" => \@custom_files, "version" => \&prt_version, "h|help|?" => \&prt_help, ) || ( &warn( 'CMD_LINE_ERROR', $T ), exit(1) ); $SIG{__WARN__} = 'DEFAULT'; CHKLOG: ( defined($logs_filename) ) && do { open( LOGFILE, "> " . $logs_filename ) || ( &warn( 'FILE_NO_OPEN', $T, $logs_filename ), last CHKLOG ); $LogFile = 1; }; &header( '', "RUNNING $PROGRAM", '', "User: $USER", "Date: $DATE", "Perl: $PVER" ); &header("SETTING DEFAULTS"); %DefaultVars = (); &set_default_vars; &header("CHECKING COMMAND-LINE OPTIONS"); @data_files = (); &set_input_file($cmdln_stdin); @ARGV = (); # ensuring that command-line ARGVs array is empty &set_custom_files(); &check_command_line_vars(); &footer("COMMAND-LINE CHECKED"); } # parse_command_line sub prt_version() { my $comment = $Messages{'SHOW_VERSION'}; $comment = sprintf( $comment, $PROGRAM, $VERSION ); $Verbose = $T; $Quiet = $F; &prt_to_stderr($comment); exit(1); } # prt_version sub set_input_file() { my $stdin_flg = $F; my $chk_stdin = shift @_; my $t = scalar(@ARGV); defined($chk_stdin) && do { abs($chk_stdin) > $t && ( $chk_stdin = -$t ); $chk_stdin > 0 && ( $chk_stdin = 0 ); $t += $chk_stdin; splice( @ARGV, $t, 0, '-' ); }; &report("CHECKING_FILENAMES"); FILECHK: foreach my $test_file (@ARGV) { $test_file ne '-' && do { -e $test_file || do { &warn( 'FILE_NO_OPEN', $T, $test_file ); next FILECHK; }; &report( 'READING_FILE', $test_file ); push @data_files, $test_file; next FILECHK; }; $stdin_flg = $T; push @data_files, '-'; }; # foreach scalar(@data_files) == 0 && do { push @data_files, '-'; $stdin_flg = $T; }; $stdin_flg && &report('READING_STDIN'); } # set_input_file sub check_command_line_vars() { &report("CHECKING_CMDLN_OPTS"); &command_line_for_layout(); defined( $CmdLineVars{VARS} ) && &report("CHECKING_CMDLN_VARS"); &command_line_for_vars(); &footer("COMMAND-LINE OPTIONS CHECKED"); } # check_command_line_vars sub command_line_for_layout() { ( $n, $c ) = ( 0, '' ); foreach my $cvar ( keys %{ $CmdLineVars{LAYOUT} } ) { defined( $CmdLineVars{LAYOUT}{$cvar} ) && do { my @cary = ( 'LAYOUT', $cvar, $CmdLineVars{LAYOUT}{$cvar} ); $c = &varscheck( $F, 'LAYOUT', \@cary, \%CmdLineVars ) ? '.' : $noCV; &counter( ++$n, $c ); }; # defined($CmdLineVars{LAYOUT}{$cvar}) }; # foreach $cvar &counter_end( $n, $c ); print LOGFILE ( Data::Dumper->Dump( [ \%{ $CmdLineVars{LAYOUT} } ], [qw( *{$CmdLineVars{LAYOUT}} )] ) ) if ( $LogFile && $Debug ); } # command_line_for_layout sub command_line_for_vars() { ( $n, $c ) = ( 0, '' ); foreach my $calias (qw/ L Q S T G F /) { my ( $cvar, $cflg ); $cvar = $VarKeys{$calias}; $cflg = ( $calias ne 'L' ) ? $T : $F; defined( $CmdLineVars{VARS}{$cvar} ) && do { foreach my $ccv ( @{ $CmdLineVars{VARS}{$cvar} } ) { my @clin = (); TWOTHREE: { $cflg && do { $ccv =~ /^(.*?):{2}(.*?)={1}(.*?)$/o && ( @clin = ( $1, $2, $3 ) ); last TWOTHREE; }; $ccv =~ /^(.*?)={1}(.*?)$/o && ( @clin = ( $cvar, $1, $2 ) ); }; # TWOTHREE $c = &varscheck( $cflg, $cvar, \@clin, \%CmdLineVars ) ? $calias : $noCV; &counter( ++$n, $c ); }; # foreach $ccv }; # $CmdLineVars{VARS}{$cvar} }; # foreach $calias &counter_end( $n, $c ); print LOGFILE ( Data::Dumper->Dump( [ \%{ $CmdLineVars{VARS} } ], [qw( *{$CmdLineVars{VARS}} )] ) ) if ( $LogFile && $Debug ); } # command_line_for_vars sub set_custom_files() { unshift @custom_files, $Custom_file; my @files = (); &report("CHECKING_CUSTOM_NAMES"); MLOOP: foreach my $test_file (@custom_files) { FILECHK: { -e $test_file && last FILECHK; ( $test_file =~ m{/}og || $Custom_path eq '.' ) || do { my $tmpfl = $test_file; $test_file = "$Custom_path/$test_file"; &report( 'READING_FROM_PATH', $tmpfl, $test_file ); -e $test_file && last FILECHK; }; scalar(@custom_files) == 1 && do { &report('NO_CUSTOM_FILES'); last MLOOP; }; &report( 'CFILE_NOTOPEN', $test_file ); next MLOOP; }; # FILECHK &report( 'READING_CUSTOM_FILE', $test_file ); push @files, $test_file; }; # MLOOP: foreach @custom_files = @files; } # set_custom_files sub parse_custom_files() { &header("READING CUSTOM FILES"); MAIN: { scalar(@custom_files) == 0 && do { &report( 'NO_CUSTOM_FOUND', $file ); last MAIN; }; LOAD: foreach $file (@custom_files) { open( THIS, "< $file" ) || ( &warn( 'FILE_NO_OPEN', $T, $file ), next LOAD ); &report( 'READ_CUSTOM_FILE', $file ); ( $n, $c ) = ( 0, undef ); my ( @line, $main, $_c, $_v, $v_flag ); while () { /^\#/o && do { /^\# ([XLQSTGF]) \#/o && do { $_c = $1; $c = '*'; $_c ne 'X' && ( $ExtraCustomFlg = $F ); $v_flag = ( $_c ne 'L' ) ? $T : $F; $_v = $VarKeys{$_c}; next; }; $c = '.'; next; }; ( $c = '.', next ) if /^\s*$/o; chomp; ( $main, undef ) = split /\b\s+\#/o; $_c eq 'X' && do { $c = &parse_special_customs( $main, $ExtraCustomFlg ) ? $_c : $noCV; next; }; TWOTHREE: { $v_flag && do { $main =~ /^(.*?):{2}(.*?)={1}(.*?)$/o && ( @line = ( $1, $2, $3 ) ); last TWOTHREE; }; $main =~ /^(.*?)={1}(.*?)$/o && ( @line = ( $_v, $1, $2 ) ); }; # TWOTHREE $c = &varscheck( $v_flag, $_v, \@line, \%CustomVars ) ? $_c : $noCV; } continue { &counter( ++$n, $c ); }; # WHILE &counter_end( $n, $c ); close(THIS); }; # LOAD }; # MAIN print LOGFILE ( Data::Dumper->Dump( [ \%SpecialCache, \%CustomVars ], [qw( *SpecialCache *CustomVars )] ) ) if ( $LogFile && $Debug ); &footer("CUSTOM FILES LOADED"); } # parse_custom_files sub varscheck() { my ( $flag, $class, $rec, $varec ) = @_; defined( $DefaultVars{$class} ) || ( &warn( 'SECTION_NOT_DEF', $F ), return $F ); my $_var = \%{ $DefaultVars{$class} }; defined( $$rec[2] ) || return $F; defined( $_var->{ $$rec[1] } ) || ( &warn( 'VAR_NOT_DEFINED', $F, $class, $$rec[1] ), return $F ); &checkvarvalues( $_var->{ $$rec[1] }{'TYPE'}, \$$rec[2], $$rec[1] ) || return $F; $flag && do { my @tmpary = (); defined( @{ $varec->{$class}{ $$rec[1] } } ) || do { @{ $varec->{$class}{ $$rec[1] } } = (); }; @tmpary = &find_regexp( $$rec[0] ); $tmpary[3] = lc( $tmpary[3] ) if ( $class eq 'FEATURE' ); ( shift @tmpary ) || return $F; push @{ $varec->{$class}{ $$rec[1] } }, ( @tmpary, $$rec[2] ); return $T; }; $varec->{$class}{ $$rec[1] } = $$rec[2]; return $T; } # varscheck sub checkvarvalues() { my ( $_test, $_val, $_var ) = @_; my $_t = lc($$_val); defined( $TESTS{$_test} ) || do { &warn( 'VARTYPE_NOT_DEFINED', $T, $_test, $_var ); return $F; }; # !defined($TESTS->{$_test}) return $TESTS{$_test}->( $_val, $_var, $_t ); } # checkvarvalues sub find_regexp() { my $string = $_[0]; my ( $isOK_flg, $not_flg, $id_flg, $tmpstr, $tmpid, $escflg ); $isOK_flg = $T; $not_flg = $F; $id_flg = undef; $string =~ s{^!}{}o && ( $not_flg = $T ); # not_regexp is true $string =~ s{(\\@)$}{@@}o; # scaping trailing '@' (if element ends with) ( $string, $escflg ) = &escape_input($string); ( $tmpstr, $tmpid ) = ( undef, undef ); ( reverse($string) =~ m{^([^\/@]*?)(?:@){1}(.*)$}o ) && do { $tmpstr = reverse($2); $tmpid = reverse($1); }; # reverse($string) ( defined($tmpid) && $tmpid ne "" ) && ( $id_flg = $tmpid ); ( defined($tmpstr) && $tmpstr ne "" ) || do { $string eq '@' && ( $isOK_flg = $F ); $tmpstr = $string; }; # (defined($tmpstr) && $tmpstr ne "") REGEXPS: { $tmpstr eq '*' && do { $string = '^.*$'; #' last REGEXPS; }; # $string eq '*' $tmpstr =~ m{^/(.*)/$}o && do { ( $string, $isOK_flg ) = &eval_regexp($1); last REGEXPS; }; # $tmpstr is a regexp # ($tmpstr =~ m{^/.*[^/]$}o || $tmpstr =~ m{^[^/].*/$}o) && do { # $isOK_flg = $F; # last REGEXPS; # }; # $tmpstr is a bad defined regexp $string = '^' . ( $escflg ? $tmpstr : quotemeta($tmpstr) ) . '$'; #' }; # REGEXPS $isOK_flg && do { unless ( eval { "" =~ m{$string}; $T } ) { $isOK_flg = $F; }; # check if final regexp string is OK }; # $isOK_flg $isOK_flg || do { &warn( 'BAD_REGEXP', $F, "$string" ); $string = ""; }; # NOT $isOK_flg return ( $isOK_flg, $not_flg, $id_flg, $string ); } # find_regexp sub eval_regexp() { my $str = $_[0]; my $flag; eval { "" =~ m{$str}; $flag = $T; } || ( $flag = $F ); return ( $str, $flag ); } # eval_regexp sub escape_input() { my $var = $_[0]; my $c; $c = ( $var =~ s{([;,<>&!\{\}`'"])}{\\$1}g ) || 0; #"'` return $var, ( $c > 0 ) ? $T : $F; } # escape_input sub parse_special_customs() { my ( $string, $sflg ) = @_; my ( @psc, $tpsc ); $string =~ s/^\s+//o; @psc = split /\s+/o, $string, 2; $tpsc = lc( $psc[0] ); defined( $SpecialVars{$tpsc} ) || do { &warn( 'SPECIAL_NOT_DEF', $F, $tpsc ); return $F; }; return $SpecialVars{$tpsc}->( $psc[1], $sflg ); } # parse_special_customs sub get_spfeat_props() { my ( $cstr, $cflg, $gflg, $vna ) = @_; my ( @kao, @rr, $rr ); my ( $a, $l, $s, $w, $f, $h, $v, $t, $fn, $fz, $fk, $str ) = (undef) x 12; $cflg && do { $cstr =~ s/\"(.+?)\"//o && ( $str = $1 ); }; # $cflg @kao = split /\s+/o, $cstr; scalar(@kao) && do { foreach my $oc (@kao) { $oc =~ /^\s*$/o && next; # empty fields $oc =~ /^A:(.*)$/o && do { $rr = $1; $TESTS{FLOAT}->( \$rr, $vna . '(angle)', $rr ) && ( $a = $rr ); next; }; $oc =~ /^S:(.*)$/o && do { $rr = $1; $TESTS{LINESTY}->( \$rr, $vna . '(line_style)', lc($rr) ) && ( $s = $rr ); next; }; $oc =~ /^W:(.*)$/o && do { $rr = $1; $TESTS{PS_UNIT}->( \$rr, $vna . '(line_width)', lc($rr) ) && ( $w = $rr ); next; }; if ($gflg) { $oc =~ /^L:(.*)$/o && do { $rr = $1; $TESTS{EXTCOLOR}->( \$rr, $vna . '(line_color)', lc($rr) ) && ( $l = $rr ); next; }; $oc =~ /^F:(.*)$/o && do { $rr = $1; $TESTS{EXTCOLOR}->( \$rr, $vna . '(fill_color)', lc($rr) ) && ( $f = $rr ); next; }; $oc =~ /^K:(.*)$/o && do { $rr = $1; $TESTS{CMYKFLOAT}->( \$rr, $vna . '(score)', $rr ) && ( $fk = $rr ); next; }; } ; # if $gflg if ($cflg) { $oc =~ /^H:(.*)$/o && do { $rr = $1; $TESTS{TXTALIGN}->( \$rr, $vna . '(horizontal_align)', lc($rr), $T ) && ( $h = $rr ); next; }; $oc =~ /^V:(.*)$/o && do { $rr = $1; $TESTS{TXTALIGN}->( \$rr, $vna . '(vertical_align)', lc($rr), $F ) && ( $v = $rr ); next; }; $oc =~ /^T:(.*)$/o && do { $rr = $1; $TESTS{COLOR}->( \$rr, $vna . '(text_color)', lc($rr) ) && ( $t = $rr ); next; }; $oc =~ /^N:(.*)$/o && do { $rr = $1; $TESTS{FONT}->( \$rr, $vna . '(font_name)', lc($rr) ) && ( $fn = $rr ); next; }; $oc =~ /^Z:(.*)$/o && do { $rr = $1; $TESTS{PS_UNIT}->( \$rr, $vna . '(font_size)', lc($rr) ) && ( $fz = &get_units( \@{$rr} ) ); next; }; } ; # if $cflg }; # foreach }; # scalar(@kao) $a = defined($a) ? $a : 0; @rr = ( '', "$a", defined($l) ? "$l" : 'fg', defined($s) ? "($LineStyles{$s})" : '(solid)', defined($w) ? "@{$w}" : 'Clw', defined($f) ? "$f " . &tobool($T) : &tobool($F), defined($v) ? "($TextAlign{'V'}{$v})" : ( sin( $a * $torad ) >= 0 ? '(bv)' : '(tv)' ), defined($h) ? "($TextAlign{'H'}{$h})" : ( cos( $a * $torad ) >= 0 ? '(lh)' : '(rh)' ), defined($fz) ? "$fz" : '8 pt', defined($fn) ? $Fonts{$fn} : $Fonts{'helvetica'}, defined($t) ? "$t " . &tobool($T) : &tobool($F), defined($fk) ? "$fk" : '1', ); $rr[0] = ( defined($str) ) ? &tostring($str) : ''; return @rr; } # get_spfeat_props sub parse_GFF_files() { &header("PARSING INPUT GFF RECORDS"); LOAD: foreach $file (@data_files) { open( THIS, "< $file" ) || ( &warn( 'FILE_NO_OPEN', $T, $file ), next LOAD ); $file eq '-' && ( $file = 'STANDARD INPUT' ); &report( 'READ_GFF_FILE', $file ); ( $n, $c ) = ( 0, undef ); while () { my ( @line, $main ); ( $c = '.', next ) if /^\#/o; ( $c = '.', next ) if /^\s*$/o; chomp; # $c = $noGFF; ( $main, undef ) = split /\s+\#/o; @line = split /\s+/o, $main, 9; scalar(@line) < 8 && ( &warn( 'NOT_ENOUGH_FIELDS', $F, $file, $n, join ( " ", @line ) ), next ); $c = &GFF_format( &fieldscheck( \@line ) ); } continue { &counter( ++$n, $c ); }; # WHILE &counter_end( $n, $c ); close(THIS); }; # LOAD print LOGFILE ( Data::Dumper->Dump( [ \%GFF_DATA, \%ALN_DATA ], [qw( *GFF_DATA *ALN_DATA )] ) ) if ( $LogFile && $Debug ); &footer("DATA LOADED"); } # sub parse_GFF sub GFF_format() { my $gff = $_[0]; # return "x" if $GFF == $version1; return $GFF if $gff eq $GFF; # $version2 return $GFF_NOGP if $gff eq $GFF_NOGP; # $version2 (ungrouped) return $VECTOR if $gff eq $VECTOR; # VECTOR: GFFv2 particular case return $ALIGN if $gff eq $ALIGN; # ALIGN: GFFv2 particular case return $APLOT if $gff eq $APLOT; # Old aplot format (with colons) return $APLOT_NOGP if $gff eq $APLOT_NOGP; # Old aplot format (ungrouped) return $noGFF; } # GFF_format sub fieldscheck() { my ($list) = @_; my ( $seqname, $start, $end ) = @$list[ 0, 3, 4 ]; # ($list->[0],$list->[3],$list->[4]); ( &fcolon($seqname) && &fcolon($start) && &fcolon($end) ) && do { return &load_aplot($list); }; return &load_gff($list); } # fieldscheck sub fcolon() { return ( $_[0] =~ /^.+:.+$/o ? $T : $F ) } sub check_coords() { # ((ori,end)_1,...,(ori,end)_n) my ( $aflg, @ary ) = @_; for ( my $j = 0 ; $j <= $#ary ; $j += 2 ) { $ary[$j] > $ary[ $j + 1 ] && do { &warn( 'ORI_GREATER_END', $F, $ary[$j], $ary[ $j + 1 ], $file, $n + 1 ); return $F; }; # $ary[$j] > $ary[$j+1] }; # for return $T; } # check_coords sub check_score() { # (scoref_1,...,scoref_n) foreach my $sco (@_) { ( defined($$sco) && $$sco eq '.' ) && ( $$sco = 0 ); }; # foreach } # check_score sub check_strand() { # (str_1,...,srt_n) foreach my $str (@_) { $str !~ /$regexp_strand/o && do { &warn( 'STRAND_MISMATCH', $F, $str, $file, $n + 1 ); return $F; }; }; # foreach return $T; } # check_strand sub check_frame() { # (frm_1,...,frm_n) foreach my $frm (@_) { $frm !~ /$regexp_frame/o && do { &warn( 'FRAME_MISMATCH', $F, $frm, $file, $n + 1 ); return $F; }; }; # foreach return $T; } # check_frame sub load_gff() { # if errors found > return $noGFF my ($list) = @_; my $w_gff; ( $seqname, $source, $feature, $start, $end, $score, $strand, $frame ) = @$list[ 0, 1, 2, 3, 4, 5, 6, 7 ]; $w_gff = &load_grouping( $T, $list->[8] ); &check_gff_fields($w_gff) || ( $w_gff = $noGFF ); return $w_gff; } # load_gff sub check_gff_fields() { &check_coords( $T, $start, $end ) || ( return $F ); &check_strand($strand) || ( return $F ); &check_score( \$score ); &check_frame($frame) || ( return $F ); &add_gff_record( $_[0] ); return $T; } # check_gff_fields sub load_aplot() { # if errors found > return $noGFF my ($list) = @_; my $w_gff; ( $seqname_1, $seqname_2, $source_1, $source_2, $feature_1, $feature_2, $start_1, $start_2, $end_1, $end_2, $strand_1, $strand_2, $frame_1, $frame_2 ) = &remove_colon( @$list[ 0, 1, 2, 3, 4, 6, 7 ] ); defined($strand_2) || ( $strand_2 = $strand_1 ); defined($frame_2) || ( $frame_2 = $frame_1 ); ( $score_1, $score_2 ) = ( $list->[5], undef ); $w_gff = &load_grouping( $F, $list->[8] ); &check_aplot_fields($w_gff) || ( $w_gff = $noGFF ); return $w_gff; } # load_aplot sub remove_colon() { my @ary_out = (); my ( $a, $b ) = ( undef, undef ); foreach my $fld (@_) { ( $a, $b ) = split /:/o, $fld, 2; push @ary_out, ( ( defined($a) ? $a : '.' ), ( defined($b) ? $b : undef ) ); } return @ary_out; } # remove_colon sub check_aplot_fields() { &check_coords( $F, $start_1, $end_1, $start_2, $end_2 ) || ( return $F ); &check_strand( $strand_1, $strand_2 ) || ( return $F ); &check_score( \$score_1, \$score_2 ); &check_frame( $frame_1, $frame_2 ) || ( return $F ); &add_gff_record( $_[0] ); return $T; } # check_aplot_fields sub add_gff_record() { my $_gff = $_[0]; my ( $VarName, $Counter, $Type, $isaln, $myfunc, $t ); $isaln = ( $_gff =~ /$ALIGN|$APLOT|$APLOT_NOGP/o ) ? $T : $F; ISALN: { $isaln && do { $myfunc = \&load_aln_var; ( $VarName, $Counter, $Type ) = ( \%ALN_DATA, \$aln_COUNT, 'SEQUENCE' ); $seqname = join ( ":", $seqname_1, $seqname_2 ); $source = defined($source_2) ? join ( ":", $source_1, $source_2 ) : $source_1; $strand = defined($strand_2) ? $strand_1 . $strand_2 : $strand_1; $feature = defined($feature_2) ? join ( ":", $feature_1, $feature_2 ) : $feature_1; last ISALN; }; # $isaln $myfunc = \&load_gff_var; ( $VarName, $Counter, $Type ) = ( \%GFF_DATA, \$seq_COUNT, 'SEQUENCE' ); }; # ISALN &load_var( $seqname, $VarName, $Counter, $Type, $myfunc ); ( $VarName, $Counter, $Type ) = ( \%{ $VarName->{$seqname}[$_element] }, \$$VarName{$seqname}[$_counter][$_elemNum], 'SOURCE' ); &load_var( $source, $VarName, $Counter, $Type, $myfunc ); ( $VarName, $Counter, $Type ) = ( \%{ $VarName->{$source}[$_element] }, \$$VarName{$source}[$_counter][$_elemNum], 'STRAND' ); &load_var( $strand, $VarName, $Counter, $Type, $myfunc ); ( $VarName, $Counter, $Type ) = ( \%{ $VarName->{$strand}[$_element] }, \$$VarName{$strand}[$_counter][$_elemNum], 'GROUP' ); &load_var( $group, $VarName, $Counter, $Type, $myfunc ); $feature = lc($feature); # GFF feature (3rd field) [MUST NOT be case-sensitive] LDALN: { $isaln && do { push @{ $VarName->{$group}[$_element] }, [ 'A', # Type == ALIGNMENT {}, # Properties hash, now empty $feature, # GFF feature [AGAIN: MUST NOT be case-sensitive] $label, # Record ID if exist, order# otherwise $start_1, $end_1, $score_1, $frame_1, $start_2, $end_2, $score_2, $frame_2, ]; last LDALN; }; # $isaln my $first_fld = ( $_gff eq $VECTOR ) ? 'V' : 'G'; push @{ $VarName->{$group}[$_element] }, [ $first_fld, # Type == plain GFF or vector {}, # Properties hash, now empty $feature, # GFF feature [AGAIN: MUST NOT be case-sensitive] $label, # Record ID if exist, order# otherwise $start, $end, $score, $frame, ]; $_gff eq $VECTOR && do { @{ $VarName->{$group}[$_element][8] } = [@vect_ary]; }; }; # LDALN $t = ++$VarName->{$group}[$_counter][$_elemNum]; &set_var_defaults( 'FEATURE', \%{ $VarName->{$group}[$_element][ ( $t - 1 ) ][$_prop] } ); return; } # add_gff_record sub load_var() { my ( $_value, $_var, $_cnt, $_type, $_frf ) = @_; defined( $$_var{$_value} ) || do { $$_var{$_value}[$_counter] = &$_frf( ++$$_cnt ); &set_var_defaults( $_type, \%{ $$_var{$_value}[$_prop] } ); }; return; } # load_var sub load_gff_var() { return [ $_[0], (0) x 7 ]; } sub load_aln_var() { return [ $_[0], (0) x 9 ]; } sub set_var_defaults() { my ( $sect, $varhash ) = @_; # $$varhash = \%{$Defaults{$sect}}; return; } # set_var_defaults sub load_grouping() { my ( $_type, $attributes ) = @_; my ( $grp_string, $grp_counter, $grp_GP, $grp_NOGP, $grp_tag ); my ( $grp_flag, $group_string, @tt, @new_group, @grouping_list ); GFF_CHOICE: { $_type && do { $grp_string = "$seqname\_$source\_$strand"; $grp_counter = ++$group_gff_counter; $grp_GP = $GFF; $grp_NOGP = $GFF_NOGP; $grp_tag = ''; last GFF_CHOICE; }; $grp_string = "$seqname_1\_$seqname_2\_$source_1\_$strand_1$strand_2"; $grp_counter = ++$group_aplot_counter; $grp_GP = $APLOT; $grp_NOGP = $APLOT_NOGP; $grp_tag = $Vars{LAYOUT}{align_tag}; # %SOURCE is a temporary hash name }; $label = ''; $group_id = $grp_counter; defined($attributes) || do { $group = "$grp_string\_$group_id"; return $grp_NOGP; }; @grouping_list = split /\s*;\s*/o, $attributes; $grp_flag = 0; $group_string = shift @grouping_list; ( $group_string =~ /$regexp_group/o ) && do { @new_group = ( defined($1) ? $1 : '', defined($2) ? $2 : '', defined($3) ? $3 : '' ); }; $new_group[0] =~ s/\s*$//o; ( $new_group[0] eq '' ) && do { # type 2 attributes $grp_flag = 1; $new_group[0] = $grp_tag; }; ( $new_group[1] eq '' ) && do { # type 1 attributes $grp_flag = 1; $new_group[1] = $new_group[0]; $new_group[0] = $grp_tag; }; ( $tag, $group ) = ( lc( $new_group[0] ), $new_group[1] ); # Here looking for colon field separator in aplot GFF-like grouping ( $grp_flag && $group =~ /^(.*?):(.*?)$/o ) && ( ( $group, $label ) = ( $1, $2 ) ); $_type && do { # GFF grouping @tt = ( ( ( defined( $new_group[2] ) && $new_group[2] ne '' ) ? $new_group[2] : '@@NO@@NE@@' ), @grouping_list ); $tag =~ /^$Vars{LAYOUT}{align_tag}$/ && do { return &load_GFF_align( \@tt ); }; $tag =~ /^$Vars{LAYOUT}{vector_tag}$/ && do { return &load_GFF_vector( \@tt ); }; }; for ( my $element = 0 ; $element <= $#grouping_list ; $element++ ) { $grouping_list[$element] =~ /$regexp_group/o && do { @new_group = ( defined($1) ? $1 : '', defined($2) ? $2 : '', defined($3) ? $3 : '' ); }; $new_group[0] =~ s/\s*$//og; lc( $new_group[0] ) =~ /^$Vars{LAYOUT}{label_tag}$/ && do { ( $new_group[1] eq '' ) || ( $label = $new_group[1] ); # $label = $new_group[1]; # $label eq "" && do { # (undef,$label,undef) = split /\s+/o, $new_group[0]; # }; }; }; # for $element return $grp_GP; } # load_grouping sub load_GFF_align() { my ($strf) = @_; my ( $aln_ori, $aln_end, $aln_sco, $aln_str, $aln_frm, $aln_lbl ) = (undef) x 6; my ( @lst, $fst ); ($fst) = shift @$strf; $fst ne '@@NO@@NE@@' && do { @lst = split /\s+/o, $fst; ( ( defined( $lst[0] ) && $lst[0] =~ /$regexp_float/o ) && ( defined( $lst[1] ) && $lst[1] =~ /$regexp_float/o ) ) && do { ( $aln_ori, $aln_end ) = @lst[ 0, 1 ]; ( defined( $lst[2] ) && $lst[2] =~ /$regexp_strand/o ) && do { $aln_str = $lst[2]; ( defined( $lst[3] ) && $lst[3] =~ /$regexp_frame/o ) && do { $aln_frm = $lst[3]; }; # $aln_frm }; # $aln_str }; # numbers?($lst[0] && $lst[1]) }; # defined($strf[0]) for ( my $gh = 0 ; $gh <= $#{$strf} ; $gh++ ) { my ( @q, $t, @new_id ); @q = split /\s+/o, $strf->[$gh]; $t = lc( $q[0] ); # print STDERR join(' : ',$strf->[$gh], join('***',@q).'**|', # $t, $Vars{LAYOUT}{label_tag})."\n"; $t =~ /^($Vars{LAYOUT}{label_tag})$/ && do { ( $strf->[$gh] =~ /$regexp_group/o ) && do { @new_id = ( defined($1) ? $1 : '', defined($2) ? $2 : '', defined($3) ? $3 : '' ); }; ( $new_id[1] eq '' ) || ( $aln_lbl = $new_id[1] ); next; }; # id_tag $t =~ /^$Vars{LAYOUT}{start_tag}$/ && do { ( defined( $q[1] ) && $q[1] =~ /$regexp_float/o ) && ( $aln_ori = $q[1] ); next; }; # start_tag $t =~ /^$Vars{LAYOUT}{end_tag}$/ && do { ( defined( $q[1] ) && $q[1] =~ /$regexp_float/o ) && ( $aln_end = $q[1] ); next; }; # end_tag $t =~ /^$Vars{LAYOUT}{strand_tag}$/ && do { ( defined( $q[1] ) && $q[1] =~ /$regexp_strand/o ) && ( $aln_str = $q[1] ); next; }; # strand_tag $t =~ /^$Vars{LAYOUT}{frame_tag}$/ && do { ( defined( $q[1] ) && $q[1] =~ /$regexp_frame/o ) && ( $aln_frm = $q[1] ); }; # frame_tag $t =~ /^$Vars{LAYOUT}{score_tag}$/ && do { ( defined( $q[1] ) && $q[1] =~ /$regexp_real/o ) && ( $aln_sco = $q[1] ); }; # frame_tag }; # for $gh ( defined($aln_ori) && defined($aln_end) ) || return $GFF; ( $seqname_1, $seqname_2 ) = ( $seqname, $group ); ( $source_1, $feature_1 ) = ( $source, $feature ); ( $source_2, $feature_2 ) = (undef) x 2; ( $start_1, $end_1 ) = ( $start, $end ); ( $start_2, $end_2 ) = ( $aln_ori, $aln_end ); ( $score_1, $score_2 ) = ( $score, $aln_sco ); ( $strand_1, $frame_1 ) = ( $strand, $frame ); $strand_2 = defined($aln_str) ? $aln_str : $strand_1; $frame_2 = defined($aln_frm) ? $aln_frm : $frame_1; $label = defined($aln_lbl) ? $aln_lbl : $label; return $ALIGN; } # load_GFF_align sub load_GFF_vector() { my ($strf) = @_; my ( $v_type, $v_window, $v_step, $vct_lbl ) = ( $vect_type{'sco'}, (undef) x 3 ); my ( @lst, $fst ); @vect_ary = (); ($fst) = shift @$strf; $fst ne '@@NO@@NE@@' && do { @lst = split /\s+/o, $fst; ( defined( $lst[0] ) && defined( $vect_type{ lc( $lst[0] ) } ) ) && do { $v_type = $vect_type{ lc( $lst[0] ) }; ( defined( $lst[1] ) && $lst[1] =~ /$regexp_float/o ) && do { $v_window = $lst[1]; ( defined( $lst[2] ) && $lst[2] =~ /$regexp_float/o ) && do { $v_step = $lst[2]; }; # $v_step }; # $v_window }; # $v_type }; # defined($strf[0]) for ( my $gh = 0 ; $gh <= $#{$strf} ; $gh++ ) { my ( @q, $t, @new_id ); @q = split /\s+/o, $strf->[$gh]; $t = lc( $q[0] ); # print STDERR join(' : ',$strf->[$gh], join('***',@q).'**|', # $t, $Vars{LAYOUT}{label_tag})."\n"; $t =~ /^($Vars{LAYOUT}{label_tag})$/ && do { ( $strf->[$gh] =~ /$regexp_group/o ) && do { @new_id = ( defined($1) ? $1 : '', defined($2) ? $2 : '', defined($3) ? $3 : '' ); }; ( $new_id[1] eq '' ) || ( $vct_lbl = $new_id[1] ); next; }; # id_tag $t =~ /^($Vars{LAYOUT}{scotype_tag})$/ && do { defined( $vect_type{ lc( $strf->[$gh] ) } ) && ( $v_type = $vect_type{ lc( $strf->[$gh] ) } ); next; }; # scotype_tag $t =~ /^($Vars{LAYOUT}{window_tag})$/ && do { ( defined( $q[1] ) && $q[1] =~ /$regexp_float/o ) && ( $v_window = $q[1] ); next; }; # window_tag $t =~ /^($Vars{LAYOUT}{step_tag})$/ && do { ( defined( $q[1] ) && $q[1] =~ /$regexp_float/o ) && ( $v_step = $q[1] ); next; }; # step_tag $t =~ /^$Vars{LAYOUT}{scoary_tag}$/ && do { @vect_ary = split /\s+/o, $q[1]; }; # frame_tag }; # for $gh scalar(@vect_ary) > 0 || return $GFF; ( $v_type == $vect_type{'sco'} && !defined($v_window) ) && ( $v_type = $vect_type{'ERROR'} ); defined($v_step) || ( $v_step = $v_window ); @vect_ary = ( $v_type, $v_window, $v_step, @vect_ary ); $label = defined($vct_lbl) ? $vct_lbl : $label; return $VECTOR; } # load_GFF_vector sub sort_elements() { &header("SORTING ELEMENTS BY ACCEPTOR (START)"); %Order = (); # sorting %GFF_DATA contents scalar(%GFF_DATA) && do { &report( 'SORT_GFF', '*- ', 'ANNOTATION DATA' ); &sort_elements_loop( \%GFF_DATA, 'GFF' ); }; # scalar(%GFF_DATA) > 0 # sorting %ALN_DATA contents scalar(%ALN_DATA) && do { &report( 'SORT_GFF', '*- ', 'ALIGNMENT DATA' ); &sort_elements_loop( \%ALN_DATA, 'ALN' ); }; # scalar(%ALN_DATA) > 0 print LOGFILE ( Data::Dumper->Dump( [ \%Order, \%GFF_DATA, \%ALN_DATA ], [qw( *Order *GFF_DATA *ALN_DATA )] ) ) if ( $LogFile && $Debug ); &footer("ELEMENTS SORTED"); } # sort_elements sub sort_elements_loop() { my ( $s_ref, $ktr ) = @_; my ( $v_max, $v_min, $w_max, $w_min, $s_max, $s_min, $l_max, $L_max, $aflg ); my $sq_ord = \@{ $Order{$ktr} }; # my @tt_coords = (); $aflg = $ktr eq 'ALN' ? $T : $F; @{$sq_ord} = (); foreach my $s_seq ( keys %{$s_ref} ) { &report( 'SORT_SEQ', '| *- ', $s_seq ); my @sc_coords = (); push @{$sq_ord}, [ $s_seq, $s_ref->{$s_seq}[$_counter][$_order], () ]; my $sc_ord = \@{ $sq_ord->[ $#{$sq_ord} ][2] }; my $ss_ref = \%{ $s_ref->{$s_seq}[$_element] }; foreach my $s_src ( keys %{$ss_ref} ) { &report( 'SORT_SRC', ( ( '| ' x 2 ) . '*- ' ), $s_src ); my @sr_coords = (); push @{$sc_ord}, [ $s_src, $ss_ref->{$s_src}[$_counter][$_order], () ]; my $sr_ord = \@{ $sc_ord->[ $#{$sc_ord} ][2] }; my $sc_ref = \%{ $ss_ref->{$s_src}[$_element] }; foreach my $s_str ( keys %{$sc_ref} ) { &report( 'SORT_STR', ( ( '| ' x 3 ) . '*- ' ), $s_str ); my @ft_coords = (); push @{$sr_ord}, [ $s_str, # $sc_ref->{$s_str}[$_counter][$_order], () ]; # if uncomment '$sc_ref' set next to [2] instead of [1]. my $st_ord = \@{ $sr_ord->[ $#{$sr_ord} ][1] }; my $sr_ref = \%{ $sc_ref->{$s_str}[$_element] }; my $sortfunct = ( $s_str eq '-' ) ? \&sort_reverse : \&sort_forward; my ( @layer_ary, $s_elem ); @layer_ary = ( \%{ $sc_ref->{$s_str}[$_prop] }, \%{ $ss_ref->{$s_src}[$_prop] }, \%{ $s_ref->{$s_seq}[$_prop] } ); foreach my $s_grp ( keys %{$sr_ref} ) { &report( 'SORT_GRP', ( ( '| ' x 4 ) . '*- ' ), $s_grp ); my $sg_ref = \@{ $sr_ref->{$s_grp}[$_element] }; $s_elem = $sr_ref->{$s_grp}[$_counter][$_elemNum]; $s_elem > 1 && do { @{$sg_ref} = map { $_->[3] } sort { &$sortfunct } map { [ &get_layer( 'feature_layer', # {feature_layer} \%{ $_->[$_ftprop] }, \%{ $sr_ref->{$s_grp}[$_prop] }, @layer_ary ), $_->[$_ftori], $_->[$_ftend], $_ ]; } @{$sg_ref}; # maps layer,start,end,arrayelement }; # $s_elem > 1 # @ft_coords = ( map { $_->[$_ftori], $_->[$_ftend] } @{ $sg_ref } ); $v_min = &min( map { $_->[$_ftori] } @{$sg_ref} ); $v_max = &max( map { $_->[$_ftend] } @{$sg_ref} ); $sr_ref->{$s_grp}[$_counter][$_ori] = $v_min; $sr_ref->{$s_grp}[$_counter][$_end] = $v_max; @ft_coords = ( map { $_->[$_ftsco] } @{$sg_ref} ); $s_min = &min(@ft_coords); $s_max = &max(@ft_coords); $sr_ref->{$s_grp}[$_counter][$_mnsco] = $s_min; $sr_ref->{$s_grp}[$_counter][$_mxsco] = $s_max; # @ft_coords = ( map { &max(length($_->[$_ftname]),length($_->[$_ftid])) } # @{ $sg_ref } ); $l_max = &max( map { &max( length( $_->[$_ftname] ), length( $_->[$_ftid] ) ); } @{$sg_ref} ); $sr_ref->{$s_grp}[$_counter][$_flw] = $l_max; $L_max = length($s_grp); # $aflg && do { # @ft_coords = ( map { $_->[$_ftnori], $_->[$_ftnend] } @{ $sg_ref } ); $w_min = &min( map { $_->[$_ftnori] } @{$sg_ref} ); $w_max = &max( map { $_->[$_ftnend] } @{$sg_ref} ); $sr_ref->{$s_grp}[$_counter][$_nori] = $w_min; $sr_ref->{$s_grp}[$_counter][$_nend] = $w_max; push @{$st_ord}, [ $s_grp, $v_min, $v_max, $s_min, $s_max, $l_max, $L_max, $w_min, $w_max ]; }; $aflg || do { push @{$st_ord}, [ $s_grp, $v_min, $v_max, $s_min, $s_max, $l_max, $L_max ]; }; # &report( 'SORT_FTR', ( '| ' x 5 ), $s_elem ); }; # foreach $s_grp shift @layer_ary; # @ft_coords = ( map { $_->[1], $_->[2] } @{ $st_ord } ); $v_min = &min( map { $_->[1] } @{$st_ord} ); $v_max = &max( map { $_->[2] } @{$st_ord} ); $sc_ref->{$s_str}[$_counter][$_ori] = $v_min; $sc_ref->{$s_str}[$_counter][$_end] = $v_max; # @ft_coords = ( map { $_->[3], $_->[4] } @{ $st_ord } ); $s_min = &min( map { $_->[3] } @{$st_ord} ); $s_max = &max( map { $_->[4] } @{$st_ord} ); $sc_ref->{$s_str}[$_counter][$_mnsco] = $s_min; $sc_ref->{$s_str}[$_counter][$_mxsco] = $s_max; # @ft_coords = ( map { $_->[5] } @{ $st_ord } ); $l_max = &max( map { $_->[5] } @{$st_ord} ); $L_max = &max( map { $_->[6] } @{$st_ord} ); $sc_ref->{$s_str}[$_counter][$_flw] = $l_max; $sc_ref->{$s_str}[$_counter][$_glw] = $L_max; $aflg && do { # @ft_coords = ( map { $_->[6], $_->[7] } @{ $st_ord } ); $w_min = &min( map { $_->[7] } @{$st_ord} ); $w_max = &max( map { $_->[8] } @{$st_ord} ); $sc_ref->{$s_str}[$_counter][$_nori] = $w_min; $sc_ref->{$s_str}[$_counter][$_nend] = $w_max; push @sr_coords, [ $v_min, $v_max, $s_min, $s_max, $l_max, $L_max, $w_min, $w_max ]; }; # push @sr_coords, $v_min, $v_max; $aflg || do { push @sr_coords, [ $v_min, $v_max, $s_min, $s_max, $l_max, $L_max ]; }; # @{$st_ord} = map { $_->[3] } sort { &$sortfunct } map { [ &get_layer( 'group_layer', # {group_layer} \%{ $sr_ref->{ $_->[0] }[$_prop] }, @layer_ary ), $_->[1], $_->[2], $_->[0] ]; } @{$st_ord}; $s_elem = $sc_ref->{$s_str}[$_counter][$_elemNum]; &report( 'SORT_GPN', ( '| ' x 4 ), $s_elem ); }; # foreach $s_str @{$sr_ord} = map { $_->[2] } sort { $a->[0] <=> $b->[0] # sort by layer || $a->[1] <=> $b->[1] # sort by "strand number" } map { [ &get_layer( 'strand_layer', # {strand_layer} \%{ $sc_ref->{ $_->[0] }[$_prop] }, \%{ $ss_ref->{$s_src}[$_prop] }, \%{ $s_ref->{$s_seq}[$_prop] } ), $StrandNum{ $_->[0] }, $_ ]; } @{$sr_ord}; # @tt_coords = ( map { $_->[0], $_->[1] } @sr_coords ); $v_min = &min( map { $_->[0] } @sr_coords ); $v_max = &max( map { $_->[1] } @sr_coords ); $ss_ref->{$s_src}[$_counter][$_ori] = $v_min; $ss_ref->{$s_src}[$_counter][$_end] = $v_max; # @tt_coords = ( map { $_->[2], $_->[3] } @sr_coords ); $s_min = &min( map { $_->[2] } @sr_coords ); $s_max = &max( map { $_->[3] } @sr_coords ); $ss_ref->{$s_src}[$_counter][$_mnsco] = $s_min; $ss_ref->{$s_src}[$_counter][$_mxsco] = $s_max; $l_max = &max( map { $_->[4] } @sr_coords ); $L_max = &max( map { $_->[5] } @sr_coords ); $ss_ref->{$s_src}[$_counter][$_flw] = $l_max; $ss_ref->{$s_src}[$_counter][$_glw] = $L_max; $aflg && do { # @tt_coords = ( map { $_->[5], $_->[6] } @sr_coords ); $w_min = &min( map { $_->[6] } @sr_coords ); $w_max = &max( map { $_->[7] } @sr_coords ); $ss_ref->{$s_src}[$_counter][$_nori] = $w_min; $ss_ref->{$s_src}[$_counter][$_nend] = $w_max; push @sc_coords, [ $v_min, $v_max, $s_min, $s_max, $l_max, $L_max, $w_min, $w_max ]; }; # push @sc_coords, $v_min, $v_max; $aflg || do { push @sc_coords, [ $v_min, $v_max, $s_min, $s_max, $l_max, $L_max ]; }; }; # foreach $s_src &sort_by_inputorderlayer( $sc_ord, $ss_ref, \%{ $s_ref->{$s_seq}[$_prop] } ); # @tt_coords = ( map { $_->[0], $_->[1] } @sc_coords ); $s_ref->{$s_seq}[$_counter][$_ori] = &min( map { $_->[0] } @sc_coords ); $s_ref->{$s_seq}[$_counter][$_end] = &max( map { $_->[1] } @sc_coords ); # @tt_coords = ( map { $_->[2], $_->[3] } @sc_coords ); $s_ref->{$s_seq}[$_counter][$_mnsco] = &min( map { $_->[2] } @sc_coords ); $s_ref->{$s_seq}[$_counter][$_mxsco] = &max( map { $_->[3] } @sc_coords ); $s_ref->{$s_seq}[$_counter][$_flw] = &max( map { $_->[4] } @sc_coords ); $s_ref->{$s_seq}[$_counter][$_glw] = &max( map { $_->[5] } @sc_coords ); $aflg && do { # @tt_coords = ( map { $_->[5], $_->[6] } @sc_coords ); $s_ref->{$s_seq}[$_counter][$_nori] = &min( map { $_->[6] } @sc_coords ); $s_ref->{$s_seq}[$_counter][$_nend] = &max( map { $_->[7] } @sc_coords ); }; }; # foreach $s_seq &sort_by_inputorder($sq_ord); return; } #sort_elements_loop sub get_layer() { my ( $name, @refs ) = @_; my ( $out, $v ); $out = 0; # # print STDERR ("#"x40)."\n"; foreach $v (qw/ FEATURE GROUP STRAND SOURCE SEQUENCE /) { # print STDERR "### GET LAYER: $v ($name) : ". # (defined($Defaults{$v}{$name})?$Defaults{$v}{$name}:"undef")."\n"; defined( $Defaults{$v}{$name} ) && ( $out = $Defaults{$v}{$name} ); }; # foreach foreach $v (@refs) { # print STDERR "### GET LAYER: $v ($name) : ". # (defined($v->{$name})?$v->{$name}:"undef")."\n"; defined( $v->{$name} ) && ( $out = $v->{$name} ); }; # foreach # print STDERR "### GET LAYER: $name = $out \n"; return $out; } # get_layer sub sort_by_inputorder() { my $ref = $_[0]; @{$ref} = map { [ $_->[0], $_->[2] ] } sort { $a->[1] <=> $b->[1] } map { [ $_->[0], $_->[1], $_->[2] ] } @{$ref}; } # sort_by_inputorder sub sort_by_inputorderlayer() { my ( $ref, $soref, $sqref ) = @_; @{$ref} = map { [ $_->[0], $_->[3] ] } sort { $a->[1] <=> $b->[1] # {source_layer} || $a->[2] <=> $b->[2] # input order } map { [ $_->[0], &get_layer( 'source_layer', \%{ $soref->{ $_->[0] }[$_prop] }, $sqref ), $_->[1], $_->[2] ]; } @{$ref}; } # sort_by_inputorderlayer sub sort_forward { $a->[0] <=> $b->[0] # sorting by layer or $a->[1] <=> $b->[1] # sorting by start or $b->[2] <=> $a->[2]; # reverse sorting by end if same start } # sort_forward # sub sort_reverse { $a->[0] <=> $b->[0] # sorting by layer or $b->[2] <=> $a->[2] # reverse sorting by end or $a->[1] <=> $b->[1]; # sorting by start if same end } # sort_reverse sub merge_custom_vars() { &header("MAPPING CUSTOMIZATION INPUTS TO MAIN VARS"); foreach my $var_name ( keys %{ $Defaults{LAYOUT} } ) { defined( $CmdLineVars{LAYOUT}{$var_name} ) && do { $Vars{LAYOUT}{$var_name} = $CmdLineVars{LAYOUT}{$var_name}; next; }; defined( $CustomVars{LAYOUT}{$var_name} ) && do { $Vars{LAYOUT}{$var_name} = $CustomVars{LAYOUT}{$var_name}; next; }; $Vars{LAYOUT}{$var_name} = $Defaults{LAYOUT}{$var_name}; }; # foreach $var_name foreach my $_sec ( keys %Defaults ) { $_sec eq 'LAYOUT' && next; # skip layout variables foreach my $_var ( keys %{ $Defaults{$_sec} } ) { defined( $CustomVars{$_sec}{$_var} ) && do { push @{ $Vars{$_sec}{$_var} }, @{ $CustomVars{$_sec}{$_var} }; }; # defined($CustomVars{$_sec}{$_var}) defined( $CmdLineVars{$_sec}{$_var} ) && do { push @{ $Vars{$_sec}{$_var} }, @{ $CmdLineVars{$_sec}{$_var} }; }; # defined($CustomVars{$_sec}{$_var}) }; # foreach $vnm }; # foreach $sct print LOGFILE ( Data::Dumper->Dump( [ \%Vars ], [qw( *Vars )] ) ) if ( $LogFile && $Debug ); &footer("VALUES SET for MAIN VARS"); } # merge_custom_vars sub map_vars_data() { &header("SETTING CUSTOM VALUES TO GFF ELEMENTS"); foreach my $v_sec ( keys %Vars ) { $v_sec eq 'LAYOUT' && next; # skip layout variables foreach my $v_var ( keys %{ $Vars{$v_sec} } ) { my @v_values = @{ $Vars{$v_sec}{$v_var} }; for ( my $foo = 0 ; $foo < $#v_values ; $foo += 4 ) { my @tl = @v_values[ $foo .. ( $foo + 3 ) ]; &map_vars_to_GFF( \%GFF_DATA, $v_sec, $v_var, @tl ); &map_vars_to_GFF( \%ALN_DATA, $v_sec, $v_var, @tl ); }; # for $foo }; # foreach $vnm }; # foreach $sct print LOGFILE ( Data::Dumper->Dump( [ \%GFF_DATA, \%ALN_DATA ], [qw( *GFF_DATA *ALN_DATA )] ) ) if ( $LogFile && $Debug ); &footer("VALUES SET for GFF ELEMENTS"); } # map_vars_data sub map_vars_to_GFF() { my ( $mainref, $v_sec, $v_var, $neg_flg, $id_flg, $reg_exp, $the_value, $name_test ) = @_; $name_test = $neg_flg ? \&match_regexp_neg : \&match_regexp; foreach my $seq ( keys %{$mainref} ) { my $seq_ref = \@{ $mainref->{$seq} }; $v_sec eq 'SEQUENCE' && do { &does_feat_match( $name_test, $seq, $reg_exp, $seq_ref, $_prop, $v_sec, $v_var, $the_value ); next; }; foreach my $src ( keys %{ $seq_ref->[$_element] } ) { my $src_ref = \@{ $seq_ref->[$_element]{$src} }; $v_sec eq 'SOURCE' && do { &does_feat_match( $name_test, $src, $reg_exp, $src_ref, $_prop, $v_sec, $v_var, $the_value ); next; }; foreach my $str ( keys %{ $src_ref->[$_element] } ) { my $str_ref = \@{ $src_ref->[$_element]{$str} }; $v_sec eq 'STRAND' && do { &does_feat_match( $name_test, $str, $reg_exp, $str_ref, $_prop, $v_sec, $v_var, $the_value ); next; }; foreach my $grp ( keys %{ $str_ref->[$_element] } ) { my $grp_ref = \@{ $str_ref->[$_element]{$grp} }; $v_sec eq 'GROUP' && do { &does_feat_match( $name_test, $grp, $reg_exp, $grp_ref, $_prop, $v_sec, $v_var, $the_value ); next; }; foreach my $feat ( 0 .. $#{ $grp_ref->[$_element] } ) { my ( $feat_ref, $ft_name, $ft_id, $ft_vars ); $feat_ref = \@{ $grp_ref->[$_element][$feat] }; ( $ft_name, $ft_id ) = ( $feat_ref->[$_ftname], $feat_ref->[$_ftid] ); # check ID defined($id_flg) && do { $ft_id =~ /^$id_flg$/o && do { &does_feat_match( $name_test, $ft_name, $reg_exp, $feat_ref, $_ftprop, $v_sec, $v_var, $the_value ); }; # $ft_id =~ /^$id_flg$/o next; }; # $id_flg ne $NULL # check regexp &does_feat_match( $name_test, $ft_name, $reg_exp, $feat_ref, $_ftprop, $v_sec, $v_var, $the_value ); }; # foreach my $feat }; # foreach my $grp }; # foreach my $str }; # foreach my $src }; # foreach my $seq return; } # map_vars_to_GFF sub does_feat_match() { my ( $thetest, $name, $rexp, $gffref, $prop, $sct, $var, $value ) = @_; &$thetest( $name, $rexp ) && do { ( ref( $gffref->[$prop] ) eq 'REF' ) && &set_all_defaults( $gffref, $sct ); $gffref->[$prop]{$var} = $value; }; } # does_feat_match sub match_regexp() { $_[0] =~ /$_[1]/ && return $T; return $F; } # match_regexp sub match_regexp_neg() { $_[0] !~ /$_[1]/ && return $T; return $F; } # match_regexp_neg sub set_all_defaults() { my ( $the_hash, $the_sec ) = @_; $the_hash->[$_prop] = (); foreach my $vnm ( keys %{ $Defaults{$the_sec} } ) { $the_hash->[$_prop]{$vnm} = \$Defaults{$the_sec}{$vnm}; }; # foreach $nm } # set_all_defaults sub set_page_vars() { &header("SETTING PAGE LAYOUT"); my $var = \%{ $Vars{LAYOUT} }; &set_page_size($var); &set_page_axes($var); &set_seq_boundaries($var); &set_score_boundaries($var); &set_tickmark_vars($var); &find_prop_ratio($var); &set_misc_vars($var); &set_page_labels($var); &footer("PAGE LAYOUT SET for CURRENT PLOT"); } # set_page_vars sub set_page_size() { my ($vrf) = @_; PSIZES: { defined( $vrf->{page_bbox} ) && do { $vrf->{_page_width} = &get_units( \@{ $vrf->{page_bbox}[1] } ); $vrf->{_page_height} = &get_units( \@{ $vrf->{page_bbox}[2] } ); $FORMATS{ $vrf->{page_bbox}[0] } = [ ++$formats, $vrf->{_page_width}, $vrf->{_page_height} ]; $vrf->{page_size} = $vrf->{page_bbox}[0]; last PSIZES; }; ( $vrf->{_page_width}, $vrf->{_page_height} ) = @{ $FORMATS{ $vrf->{page_size} } }[ 1, 2 ]; }; # PSIZES &report( 'SETPAGESIZE', $vrf->{page_size}, "$vrf->{_page_width} x $vrf->{_page_height}" ); return; } # set_page_size sub set_page_margins() { my ($vrf) = @_; $vrf->{_page_margins} = [ &get_units( \@{ $vrf->{margin_left}[0] } ), &get_units( \@{ $vrf->{margin_right}[0] } ), &get_units( \@{ $vrf->{margin_top}[0] } ), &get_units( \@{ $vrf->{margin_bottom}[0] } ) ]; $vrf->{_page_clip_width} = $vrf->{_page_width} - ( $vrf->{_page_margins}[0] + $vrf->{_page_margins}[1] ); $vrf->{_page_clip_height} = $vrf->{_page_height} - ( $vrf->{_page_margins}[2] + $vrf->{_page_margins}[3] ); return; } # set_page_margins sub set_page_axes() { my ($vrf) = @_; $vrf->{_x_sequence_name} = defined( $vrf->{x_sequence_name} ) ? $vrf->{x_sequence_name} : '.+'; $vrf->{_y_sequence_name} = defined( $vrf->{y_sequence_name} ) ? $vrf->{y_sequence_name} : '.+'; if ( defined( $vrf->{alignment_name} ) ) { ( $vrf->{_x_sequence_name}, $vrf->{_y_sequence_name} ) = split /:/o, $vrf->{alignment_name}, 2; } elsif ( scalar( @{ $Order{ALN} } ) > 0 ) { ( $vrf->{_x_sequence_name}, $vrf->{_y_sequence_name} ) = split /:/o, $Order{ALN}[0][0], 2; } ; # defined($vrf->{alignment_name}) $vrf->{_alignment_name} = [ $vrf->{_x_sequence_name}, $vrf->{_y_sequence_name} ]; # # $Debug && print STDERR "###OOPS(1)### $vrf->{_x_sequence_name} x $vrf->{_y_sequence_name} = @{$vrf->{_alignment_name}}\n"; # ( $vrf->{_plot_aln}, $vrf->{_swap_aln} ) = &search_alnname( \@{ $vrf->{_alignment_name} }, \@{ $Order{ALN} } ); $vrf->{_swap_aln} && do { ( $vrf->{x_sequence_name}, $vrf->{y_sequence_name} ) = ( $vrf->{y_sequence_name}, $vrf->{x_sequence_name} ); }; # $vrf->{_swap_aln} $vrf->{_plot_aln} && do { $vrf->{_x_sequence_name} = defined( $vrf->{x_sequence_name} ) ? $vrf->{x_sequence_name} : $vrf->{_alignment_name}[0]; $vrf->{_y_sequence_name} = defined( $vrf->{y_sequence_name} ) ? $vrf->{y_sequence_name} : $vrf->{_alignment_name}[1]; }; # $vrf->{_plot_aln} # # $Debug && print STDERR "###OOPS(2)### $vrf->{_x_sequence_name} x $vrf->{_y_sequence_name} = @{$vrf->{_alignment_name}}\n"; # ( $vrf->{_plot_x_sequence}, $vrf->{_x_sequence_name} ) = &search_seqname( $vrf->{_x_sequence_name}, undef, \@{ $Order{GFF} } ); ( $vrf->{_plot_y_sequence}, $vrf->{_y_sequence_name} ) = &search_seqname( $vrf->{_y_sequence_name}, $vrf->{_x_sequence_name}, \@{ $Order{GFF} } ); ( $vrf->{_report_x_sequence_name}, $vrf->{_report_y_sequence_name} ) = ( $vrf->{_x_sequence_name}, $vrf->{_y_sequence_name} ); $vrf->{_alignment_name} = join ( ":", $vrf->{_alignment_name}[0] ne '.+' ? $vrf->{_alignment_name}[0] : $vrf->{_x_sequence_name}, $vrf->{_alignment_name}[1] ne '.+' ? $vrf->{_alignment_name}[1] : $vrf->{_y_sequence_name} ); $vrf->{_report_alignment_name} = $vrf->{_alignment_name}; # # $Debug && print STDERR "###OOPS(3)### $vrf->{_x_sequence_name} x $vrf->{_y_sequence_name} = $vrf->{_alignment_name}\n"; # # ($vrf->{alignment_name} = $vrf->{_alignment_name}) =~ s/$;/ : /o; my ( $yf, $nf ) = ( 'was found. PLOTTING IT...', 'NOT found. NOT PLOTTED...' ); &report( 'SETPAGEAXES', ( "ALIGNMENT \"$vrf->{_report_alignment_name}\" " . ( $vrf->{_plot_aln} ? $yf : $nf ) . ( $vrf->{_swap_aln} ? "\n### The alignment found makes program" . " to swap X-Y annotations..." : "" ) ), ( "X-SEQUENCE \"$vrf->{_report_x_sequence_name}\" " . ( $vrf->{_plot_x_sequence} ? $yf : $nf ) ), ( "Y-SEQUENCE \"$vrf->{_report_y_sequence_name}\" " . ( $vrf->{_plot_y_sequence} ? $yf : $nf ) ) ); return; } # set_page_axes sub search_alnname() { my ( $_ra, $_ro ) = @_; my ( $sq_a, $sq_b, $naln, $nm_a, $nm_b ); # ( $sq_a, $sq_b ) = @$_ra; foreach $naln (@$_ro) { ( $nm_a, $nm_b ) = split /:/o, $naln->[0], 2; ( "$nm_a" eq "$sq_a" && "$nm_b" eq "$sq_b" ) && do { @$_ra = ( $nm_a, $nm_b ); return ( $T, $F ); }; }; # foreach $naln # swapping foreach $naln (@$_ro) { ( $nm_a, $nm_b ) = split /:/o, $naln->[0], 2; ( "$nm_a" eq "$sq_b" && "$nm_b" eq "$sq_a" ) && do { @$_ra = ( $nm_a, $nm_b ); return ( $T, $T ); }; }; # foreach $naln # return ( $F, $F ); } # search_alnname sub search_seqname() { my ( $sq_a, $sq_b, $_ro ) = @_; my ( $a_found, $naln ); foreach $naln (@$_ro) { ( $sq_a eq '.+' && defined($sq_b) && "$naln->[0]" eq "$sq_b" ) && next; ( $sq_a eq '.+' || "$naln->[0]" eq "$sq_a" ) && do { $sq_a = $naln->[0]; return ( $T, $sq_a ); }; }; # foreach $naln return ( $F, undef ); } # search_seqname sub get_first_coord() { my ( $ary, $cct ) = @_; my ( $thelast, $cur, $tht ); $thelast = $#{$ary}; for ( $cur = 0 ; $cur < $thelast ; $cur++ ) { defined( $ary->[$cur] ) && do { ( $tht, $ary->[$cur] ) = ( $ary->[$cur], undef ); return &get_units( \@$tht ); }; # defined($ary[$cur]) }; # for $cur $$cct++; return &get_units( \@{ $ary->[$thelast] } ); } # get_first_coord sub set_seq_boundaries() { my ($vrf) = @_; my ( $a, $x, $y, $rrf, %tcrds, $cc ); %tcrds = ( xs => [], xe => [], ys => [], ye => [], ); ( $a, $x, $y ) = ( $vrf->{_alignment_name}, $vrf->{_x_sequence_name}, $vrf->{_y_sequence_name} ); $vrf->{_plot_aln} && do { $rrf = \@{ $ALN_DATA{$a}[$_counter] }; if ( $vrf->{_swap_aln} ) { push @{ $tcrds{xs} }, $rrf->[$_nori]; push @{ $tcrds{xe} }, $rrf->[$_nend]; push @{ $tcrds{ys} }, $rrf->[$_ori]; push @{ $tcrds{ye} }, $rrf->[$_end]; } else { push @{ $tcrds{xs} }, $rrf->[$_ori]; push @{ $tcrds{xe} }, $rrf->[$_end]; push @{ $tcrds{ys} }, $rrf->[$_nori]; push @{ $tcrds{ye} }, $rrf->[$_nend]; } ; # if $vrf->{_swap_aln} }; $vrf->{_plot_x_sequence} && do { $rrf = \@{ $GFF_DATA{$x}[$_counter] }; push @{ $tcrds{xs} }, $rrf->[$_ori]; push @{ $tcrds{xe} }, $rrf->[$_end]; }; $vrf->{_plot_y_sequence} && do { $rrf = \@{ $GFF_DATA{$y}[$_counter] }; push @{ $tcrds{ys} }, $rrf->[$_ori]; push @{ $tcrds{ye} }, $rrf->[$_end]; }; # print LOGFILE (Data::Dumper->Dump([ \%tcrds ], [ qw( *tcrds ) ])) # if ($LogFile && $Debug); # $vrf->{_x_start} = [ ( scalar( @{ $tcrds{xs} } ) > 0 ? &min( @{ $tcrds{xs} } ) : 0 ), 'bp' ]; $vrf->{_x_end} = [ ( scalar( @{ $tcrds{xe} } ) > 0 ? &max( @{ $tcrds{xe} } ) : 1000 ), 'bp' ]; $vrf->{_y_start} = [ ( scalar( @{ $tcrds{ys} } ) > 0 ? &min( @{ $tcrds{ys} } ) : 0 ), 'bp' ]; $vrf->{_y_end} = [ ( scalar( @{ $tcrds{ye} } ) > 0 ? &max( @{ $tcrds{ye} } ) : 1000 ), 'bp' ]; # %tcrds = ( xs => [ defined( $vrf->{x_sequence_zoom} ) ? $vrf->{x_sequence_zoom}[0] : undef, defined( $vrf->{x_sequence_zoom_start} ) ? $vrf->{x_sequence_zoom_start} : undef, defined( $vrf->{x_sequence_coords} ) ? $vrf->{x_sequence_coords}[0] : undef, defined( $vrf->{x_sequence_start} ) ? $vrf->{x_sequence_start} : undef, $vrf->{_x_start} ], xe => [ defined( $vrf->{x_sequence_zoom} ) ? $vrf->{x_sequence_zoom}[1] : undef, defined( $vrf->{x_sequence_zoom_end} ) ? $vrf->{x_sequence_zoom_end} : undef, defined( $vrf->{x_sequence_coords} ) ? $vrf->{x_sequence_coords}[1] : undef, defined( $vrf->{x_sequence_end} ) ? $vrf->{x_sequence_end} : undef, $vrf->{_x_end} ], ys => [ defined( $vrf->{y_sequence_zoom} ) ? $vrf->{y_sequence_zoom}[0] : undef, defined( $vrf->{y_sequence_zoom_start} ) ? $vrf->{y_sequence_zoom_start} : undef, defined( $vrf->{y_sequence_coords} ) ? $vrf->{y_sequence_coords}[0] : undef, defined( $vrf->{y_sequence_start} ) ? $vrf->{y_sequence_start} : undef, $vrf->{_y_start} ], ye => [ defined( $vrf->{y_sequence_zoom} ) ? $vrf->{y_sequence_zoom}[1] : undef, defined( $vrf->{y_sequence_zoom_end} ) ? $vrf->{y_sequence_zoom_end} : undef, defined( $vrf->{y_sequence_coords} ) ? $vrf->{y_sequence_coords}[1] : undef, defined( $vrf->{y_sequence_end} ) ? $vrf->{y_sequence_end} : undef, $vrf->{_y_end} ], ); # %tcrds # print LOGFILE (Data::Dumper->Dump([ \%tcrds ], [ qw( *tcrds ) ])) # if ($LogFile && $Debug); # $vrf->{_x_start} = &get_units( defined( $vrf->{x_sequence_coords} ) ? \@{ $vrf->{x_sequence_coords}[0] } : \@{ $vrf->{_x_start} } ); $vrf->{_x_end} = &get_units( defined( $vrf->{x_sequence_coords} ) ? \@{ $vrf->{x_sequence_coords}[1] } : \@{ $vrf->{_x_end} } ); $vrf->{_y_start} = &get_units( defined( $vrf->{y_sequence_coords} ) ? \@{ $vrf->{y_sequence_coords}[0] } : \@{ $vrf->{_y_start} } ); $vrf->{_y_end} = &get_units( defined( $vrf->{y_sequence_coords} ) ? \@{ $vrf->{y_sequence_coords}[1] } : \@{ $vrf->{_y_end} } ); $vrf->{zoom_area} && do { $cc = 0; $vrf->{_x_zoomarea_start} = &get_first_coord( \@{ $tcrds{xs} }, \$cc ); $vrf->{_x_zoomarea_end} = &get_first_coord( \@{ $tcrds{xe} }, \$cc ); $vrf->{_y_zoomarea_start} = &get_first_coord( \@{ $tcrds{ys} }, \$cc ); $vrf->{_y_zoomarea_end} = &get_first_coord( \@{ $tcrds{ye} }, \$cc ); $cc == 4 && ( $vrf->{zoom_area} = $F, $vrf->{zoom} = $F ); }; # zoom_area $vrf->{zoom} && do { $cc = 0; $vrf->{_x_zoom_start} = &get_first_coord( \@{ $tcrds{xs} }, \$cc ); $vrf->{_x_zoom_end} = &get_first_coord( \@{ $tcrds{xe} }, \$cc ); $vrf->{_y_zoom_start} = &get_first_coord( \@{ $tcrds{ys} }, \$cc ); $vrf->{_y_zoom_end} = &get_first_coord( \@{ $tcrds{ye} }, \$cc ); $cc == 4 && ( $vrf->{zoom} = $F ); $vrf->{zoom} && do { $vrf->{_x_start} = $vrf->{_x_zoom_start}; $vrf->{_x_end} = $vrf->{_x_zoom_end}; $vrf->{_y_start} = $vrf->{_y_zoom_start}; $vrf->{_y_end} = $vrf->{_y_zoom_end}; }; # zoom... }; # zoom $vrf->{zoom} || ( $vrf->{zoom_marks} = $F ); # !zoom &report( 'PLOTLIMITS', "X : $vrf->{_x_start} to $vrf->{_x_end}", "Y : $vrf->{_y_start} to $vrf->{_y_end}" ); &report( ( $vrf->{zoom} ? ( 'ONZOOM', "X : $vrf->{_x_zoom_start} to $vrf->{_x_zoom_end}", "Y : $vrf->{_y_zoom_start} to $vrf->{_y_zoom_end}" ) : 'NOZOOM' ) ); &report( ( $vrf->{zoom_area} ? ( 'ONZOOMAREA', "X : $vrf->{_x_zoomarea_start} to $vrf->{_x_zoomarea_end}", "Y : $vrf->{_y_zoomarea_start} to $vrf->{_y_zoomarea_end}" ) : 'NOZOOMAREA' ) ); return; } # set_seq_boundaries sub set_score_boundaries() { my ($vrf) = @_; my ( $mnsco, $mxsco ); ( $vrf->{_aln_min_score}, $vrf->{_aln_max_score} ) = ( 0, 100 ); $vrf->{_plot_aln} && do { $vrf->{_aln_min_score} = $ALN_DATA{ $vrf->{_alignment_name} }[$_counter][$_mnsco]; $vrf->{_aln_max_score} = $ALN_DATA{ $vrf->{_alignment_name} }[$_counter][$_mxsco]; }; # _plot_aln defined( $vrf->{aplot_score_range} ) && do { ( $mnsco, $mxsco ) = @{ $vrf->{aplot_score_range} }; defined($mnsco) && ( $vrf->{_aln_min_score} = $mnsco ); defined($mxsco) && ( $vrf->{_aln_max_score} = $mxsco ); }; # defined($vrf->{aplot_score_range}) ( $vrf->{_pbox_min_score}, $vrf->{_pbox_max_score} ) = ( $vrf->{_aln_min_score}, $vrf->{_aln_max_score} ); ( $vrf->{show_percent_box} && defined( $vrf->{percent_box_score_range} ) ) && do { ( $mnsco, $mxsco ) = @{ $vrf->{percent_box_score_range} }; defined($mnsco) && ( $vrf->{_pbox_min_score} = $mnsco ); defined($mxsco) && ( $vrf->{_pbox_max_score} = $mxsco ); }; # show_percent_box &report( 'PLOTSCORES', "ALIGNMENT: $vrf->{_aln_min_score} to $vrf->{_aln_max_score}", "PERCENT box: $vrf->{_pbox_min_score} to $vrf->{_pbox_max_score}" ); } # set_score_boundaries sub set_tickmark_vars() { my ($vrf) = @_; my ( @tary, $stplen ); $vrf->{show_only_bottom_ticks} && do { WHATICK: { $vrf->{show_extra_box} && ( @tary = ( $F, $F, $T ), last WHATICK ); $vrf->{show_percent_box} && ( @tary = ( $F, $T, $F ), last WHATICK ); @tary = ( $T, $F, $F ); }; # WHATICK ( $vrf->{show_aplot_x_ticks}, $vrf->{show_percent_x_ticks}, $vrf->{show_extrabox_x_ticks} ) = @tary; }; $vrf->{_x_len} = $vrf->{_x_end} - $vrf->{_x_start} + 1; $vrf->{_y_len} = $vrf->{_y_end} - $vrf->{_y_start} + 1; if ( defined( $vrf->{aplot_major_tickmark} ) && !defined( $vrf->{major_tickmark_nucleotide} ) ) { $stplen = 10**( int( &logdec( &min( $vrf->{_x_len}, $vrf->{_y_len} ) ) ) + 1 ) / $vrf->{aplot_major_tickmark}; } else { $stplen = 10**( int( &logdec( &min( $vrf->{_x_len}, $vrf->{_y_len} ) ) - 0.175 ) ); } defined( $vrf->{major_tickmark_nucleotide} ) || do { $vrf->{major_tickmark_nucleotide} = $stplen; }; # defined($vrf->{major_tickmark_nucleotide}) defined( $vrf->{minor_tickmark_nucleotide} ) || do { $vrf->{minor_tickmark_nucleotide} = $vrf->{major_tickmark_nucleotide} / $vrf->{aplot_minor_tickmark}; }; # defined($vrf->{minor_tickmark_nucleotide}) $vrf->{_pbox_len} = $vrf->{_pbox_max_score} - $vrf->{_pbox_min_score} + 1; if ( defined( $vrf->{percent_major_tickmark} ) && !defined( $vrf->{major_tickmark_score} ) ) { $stplen = 10**( int( &logdec( $vrf->{_pbox_len} * 1000 ) ) - 2 ) / $vrf->{percent_major_tickmark}; } else { $stplen = 10**( int( &logdec( $vrf->{_pbox_len} * 1000 ) - 3 ) ); } defined( $vrf->{major_tickmark_score} ) || do { $vrf->{major_tickmark_score} = $stplen; }; # defined($vrf->{major_tickmark_score}) defined( $vrf->{minor_tickmark_score} ) || do { $vrf->{minor_tickmark_score} = $vrf->{major_tickmark_score} / $vrf->{percent_minor_tickmark}; }; # defined($vrf->{minor_tickmark_score}) &report( 'TICKDONE', "Major step $vrf->{major_tickmark_nucleotide} - " . "Minor step $vrf->{minor_tickmark_nucleotide}", "Major step $vrf->{major_tickmark_score} - " . "Minor step $vrf->{minor_tickmark_score}" ); return; } # set_tickmark_vars sub find_prop_ratio() { my ($vrf) = @_; RATIO: { defined( $vrf->{aplot_xy_scale} ) && do { ( $vrf->{aplot_xy_scale} > 0 && $vrf->{aplot_xy_scale} < 10 ) && do { $vrf->{aplot_xy_same_length} = $F; last RATIO; }; }; # {aplot_xy_scale} $vrf->{aplot_xy_same_length} && do { $vrf->{aplot_xy_scale} = -1; last RATIO; }; # {aplot_xy_same_length} $vrf->{aplot_xy_scale} = sprintf( "%5.4f", ( $vrf->{_x_len} / $vrf->{_y_len} ) ); }; # RATIO &report( 'SCALEDONE', ( ( $vrf->{aplot_xy_scale} ne -1 ) ? "Current plot has an XY-RATIO of $vrf->{aplot_xy_scale} ..." : "XY-RATIO is not taken into account for this plot ..." ), ( $vrf->{aplot_xy_same_length} ? 'YES' : 'NO' ) ); return; } # find_prop_ratio sub set_misc_vars() { my ($vrf) = @_; my %lbllen; %lbllen = ( xfl => $vrf->{feature_x_label_length}, xgl => $vrf->{group_x_label_length}, yfl => $vrf->{feature_y_label_length}, ygl => $vrf->{group_y_label_length}, ); $vrf->{_plot_x_sequence} && do { defined( $lbllen{xfl} ) || do { $lbllen{xfl} = $GFF_DATA{ $vrf->{_x_sequence_name} }[$_counter][$_flw]; }; # feature_x_label_length defined( $lbllen{xgl} ) || do { $lbllen{xgl} = $GFF_DATA{ $vrf->{_x_sequence_name} }[$_counter][$_glw]; }; # group_x_label_length }; # _plot_x_sequence $vrf->{_plot_y_sequence} && do { defined( $lbllen{yfl} ) || do { $lbllen{yfl} = $GFF_DATA{ $vrf->{_y_sequence_name} }[$_counter][$_flw]; }; # feature_y_label_length defined( $lbllen{ygl} ) || do { $lbllen{ygl} = $GFF_DATA{ $vrf->{_y_sequence_name} }[$_counter][$_glw]; }; # feature_y_label_length }; # _plot_y_sequence foreach my $u ( keys %lbllen ) { $lbllen{$u} = ( defined( $lbllen{$u} ) && $lbllen{$u} >= 0 ) ? $lbllen{$u} : 0; }; # foreach $u $vrf->{feature_x_label_length} = $lbllen{xfl}; $vrf->{group_x_label_length} = $lbllen{xgl}; $vrf->{feature_y_label_length} = $lbllen{yfl}; $vrf->{group_y_label_length} = $lbllen{ygl}; } # set_misc_vars sub set_page_labels() { my ($vrf) = @_; defined( $vrf->{title} ) || do { ( $vrf->{title} = $vrf->{_alignment_name} ) =~ s/:/ x /o; }; # defined($vrf->{title}) defined( $vrf->{subtitle} ) || ( $vrf->{subtitle} = "" ); defined( $vrf->{x_label} ) || do { $vrf->{x_label} = $vrf->{_x_sequence_name}; }; # defined($vrf->{x_label}) defined( $vrf->{y_label} ) || do { $vrf->{y_label} = $vrf->{_y_sequence_name}; }; # defined($vrf->{y_label}) defined( $vrf->{percent_box_label} ) || ( $vrf->{percent_box_label} = '' ); defined( $vrf->{percent_box_sublabel} ) || ( $vrf->{percent_box_sublabel} = '' ); defined( $vrf->{extra_box_label} ) || ( $vrf->{extra_box_label} = '' ); defined( $vrf->{extra_box_sublabel} ) || ( $vrf->{extra_box_sublabel} = '' ); $vrf->{show_ps_warnings} && do { $vrf->{_plot_x_sequence} || ( $vrf->{x_label} .= " ... X-Sequence Annotation NOT FOUND ... " ); $vrf->{_plot_y_sequence} || ( $vrf->{y_label} .= " ... Y-Sequence Annotation NOT FOUND ... " ); $vrf->{_plot_aln} || do { # PS --> angle string valn haln {fz fn} tcol x y xtxt my ( $epo, $epe ) = ( ( $vrf->{_x_end} - $vrf->{_x_start} ) / 2, ( $vrf->{_y_end} - $vrf->{_y_start} ) / 2, ); push @{ $SpecialCache{POST} }, [ $epo, $epo, $epe, $epe, '[ 45 (GFF-record Alignment Features NOT FOUND) ' . '(bv) (ch) 18 pt /Helvetica-Bold _f ' . ( $epo - 10 ) . ' ' . ( $epe + 10 ) . ' xtxt' ]; push @{ $SpecialCache{POST} }, [ $epo, $epo, $epe, $epe, '[ 45 (...Please, check your command-line and/or GFF ' . 'input files...) (tv) (ch) 15 pt /Helvetica _f ' . ( $epo + 10 ) . ' ' . ( $epe - 10 ) . ' xtxt' ]; }; # _plot_aln }; # $vrf->{show_ps_warnings} return; } # set_page_labels sub make_plot() { &header("WRITING POSTSCRIPT TO STDOUT"); &ps_header; &ps_colors; &ps_page_formats; &ps_variables; &ps_main; &ps_plot; &ps_trailer; &footer("WRITING POSTSCRIPT FINISHED"); } # make_plot sub prt_help() { open( HELP, "| more" ); print HELP <<"+++EndOfHelp+++"; PROGRAM: $PROGRAM - $VERSION Converting GFF files for pairwise alignments to PostScript. USAGE: $PROGRAM [options] DESCRIPTION: This program draws color-filled alignment plots from GFF files for that alignment and two sequences annotations. REQUIRES: $PROGRAM needs the following Perl modules installed in your system, we used those available from the standard Perl distribution. Those that are not in the standard distribution are marked with an '(*)', in such cases make sure that you already have downloaded them from CPAN (http://www.perl.com/CPAN) and installed. "Getopt::Long" - processing command-line options. "Data::Dumper" - pretty printing data structures for debugging (*). "Benchmark" - checking and comparing running times of code. ENVIRONMENT VARIABLES: There are two environmental variables that can be set by users to their preferences: + You can specify the path where $PROGRAM can find the default files with the shell variable \"GFF2APLOT_CUSTOMPATH\". Default value is the path where you are running $PROGRAM. + You can also define the default custom filename you will like with the variable \"GFF2APLOT_CUSTOMFILE\", program default filename for custom file is \".gff2aplotrc\". + Now $PROGRAM does not need to write any temporary file, so that previous versions default temporary directory path variable (\"GFF2APLOT_TMP\") is no longer used. + Setting those vars in Bourne-shell and C-shell: o Using a Bourne-Shell (e.g. bash): export GFF2APLOT_CUSTOMPATH=\"path\" export GFF2APLOT_CUSTOMFILE=\"file_name\" o Using a C-Shell: setenv GFF2APLOT_CUSTOMPATH \"path\" setenv GFF2APLOT_CUSTOMFILE \"file_name\" COMMAND-LINE OPTIONS: A double dash on itself "--" signals end of the options and start of file names (if present). You can use a single dash "-" as STDIN placeholder. Available options and a short description are listed here: -h, --help Shows this help. --version Shows current version and exits. -v, --verbose Verbose mode, a full report is sent to standard error (default is set to showing only WARNINGS). -V, --logs-filename Report is written to a log file. -q, --quiet Quiet mode, do not show any message/warning to standard error (reporting only ERRORS). -P, --page-bbox Setting a user-defined page size, and are set to points if no unit is given, you can use pt, mm, cm or in. This option overrides ANY 'page-size' definition (from command-line or custom file). -p, --page-size Setting a page size among pre-defined ones (see below for a list of available page formats). --margin-left --margin-right --margin-top --margin-bottom Setting each page margin to . If no units are provided, points are assumed, you can use points, milimeters, centimeters or inches (pt, mm, cm or in, respectively). -B, --background-color Background color. -F, --foreground-color Foreground color. -T, --title Definning plot title. -t, --subtitle Definning plot subtitle. -X, --x-label Defining X-axis label. -Y, --y-label Defining Y-axis label. -L, --percent-box-label Defining percent-box label. -l, --extra-box-label Definning Extra-Box Label. -x, --x-sequence-coords -S, --start-x-sequence Sets X-sequence first nucleotide. -E, --end-x-sequence Sets X-sequence last nucleotide. -y, --y-sequence-coords -s, --start-y-sequence Sets Y-sequence first nucleotide. -e, --end-y-sequence Sets Y-sequence last nucleotide. --x-sequence-zoom --y-sequence-zoom -Z, --zoom [ [-S ] [-E ] [-s ] [-e ] ] This option zooms an area you have selected with -S,-E,-s,-e (all 4 are optional). -z, --zoom-area [ [-S ] [-E ] [-s ] [-e ] ] This option marks a zoom area on your plot, but does not make a zoom. -A, --alignment-name Defining which alignment is going to be plotted if you have more than one alignment in your gff input. -N, --x-sequence-name Defining which sequence is going to be plotted at X-axis. -n, --y-sequence-name Defining which sequence is going to be plotted at Y-axis. -r, --aplot-xy-noteq By default X and Y axes have same length, this option disables such behaviour, so X and Y sequence will have axes-lengths proportional to their nucleotide lengths. -R, --xy-axes-scale This option allows to set a different scale between X and Y axes lengths (by default is '1'). Below 1 values make Y larger than X, and larger than 1 result in getting X larger than Y. # Must be explained better. -W, --aln-scale-width Scaling score on width for Aplot lines. -w, --aln-scale-color Scaling score on color for Aplot lines. -K, --show-ribbons Force Ribbons for all features on axes to be: (N)one, (L)ines, (R)ibbons, (B)oth. -G, --show-grid Switches 'on' grid (default is 'off'). -g, --hide-grid Switches 'off' grid (if switched on from customization files). -I, --show-percent-box Switches 'on' Percent box (default is 'off'). -i, --hide-percent-box Switches 'off' Percent box (if set to 'on' on custom files). -O, --show-extra-box Switches 'on' Extra box (default is 'off'). -o, --hide-extra-box Switches 'off' Extra box (if set to 'on' on custom files). -D, --aplot-box-color Aplot main box background color. -d, --percent-box-color Percent box background color. -b, --extra-box-color Extra box background color. --nopswarnings Switch off warnings that may appear on the final PostScript figure when X sequence, Y sequence and/or alignment input data is missing. -a, --hide-credits Switch off $PROGRAM credits line on plot. --debug Reporting variable contents when testing the program. Requires that log report file option was also activated. --layout-var '' --sequence-var '' --source-var '' --strand-var '' --group-var '' --feature-var '' Loading a feature/group/strand/source/sequence/layout customization variable from command-line. You can set several variables by repeating any of these options, i.e.: ... --feature-var 'cds::feature_shape=box' \ --feature-var 'cds::feature_color=blue' ... -C, --custom-filename Loading customization parameters from a given file (if default \".gff2aplotrc\" exists is loaded before it). Those are the colors defined in $PROGRAM: + Default Colors: black white. + Color Palette: grey pink magenta violet blue skyblue cyan seagreen green limegreen yellow orange red brown You can get up to nine color shades from Variable Colors with \"verydeep\", \"deep\", \"verydark\", \"dark\", \"light\", \"verylight\", \"pale\" and \"verypale\" prefixes, as example: verydeepblue, deepblue, verydarkblue, darkblue, blue, lightblue, verylightblue, paleblue and verypaleblue. + Dynamic colors: gradient rainbow. The following page sizes are available: from A0 to A10, from B0 to B10, 10x14, executive, folio, ledger, legal, letter, quarto, statement and tabloid. BUGS: Report any problem to 'jabril\@imim.es'. AUTHORS: $PROGRAM is under GNU-GPL Josep Francesc ABRIL FERRANDO Thomas WIEHE Roderic GUIGO SERRA Copyright (C) 1999-2003 +++EndOfHelp+++ close(HELP); exit(1); } # prt_help # # GENERAL FUNCTIONS # sub close_logfile() { close(LOGFILE) if $LogFile }; sub get_units() { return $UNITS{ $_[0]->[1] }->( $_[0]->[0] ); } sub tobool() { return ( $_[0] ? '_t' : '_f' ); } sub tostring() { ( defined( $_[0] ) && $_[0] ne '' ) || return '()'; $_[0] =~ s{[\(]}{\\050}og; $_[0] =~ s{[\)]}{\\051}og; return '(' . $_[0] . ')'; }; # tostring sub logdec() { return ( log( $_[0] ) / log(10) ); } sub trap_signals() { &prt_to_logfile( $Messages{'USER_HALT'} ); &close_logfile(); die ( $Messages{'USER_HALT'} ); } # trap_signals sub trap_signals_prog() { &prt_to_logfile( $Messages{'PROCESS_HALT'} ); &close_logfile(); die ( $Messages{'PROCESS_HALT'} ); } # trap_signals_prog sub warn() { my $type = shift @_; my $screen_flg = shift @_; my $comment = sprintf( $Messages{$type}, @_ ); # ALWAYS to STDERR if $screen_flg==$T unless $Quiet==$T $screen_flg && ( $Quiet || print STDERR $comment ); &prt_to_logfile($comment); } # warn sub prt_to_logfile() { $LogFile && ( print LOGFILE $_[0] ) } sub prt_to_stderr() { $Verbose && ( $Quiet || print STDERR $_[0] ) } sub report() { my $type = shift @_; my $comment = sprintf( $Messages{$type}, @_ ); &prt_to_stderr($comment); &prt_to_logfile($comment); } # report sub header() { my $comment = $line; foreach my $ln (@_) { $comment .= "### " . &fill_mid( "$ln", 72, " " ) . " ###\n"; } $comment .= $line; &prt_to_stderr($comment); &prt_to_logfile($comment); } # header sub footer() { $total_time = &timing($F); &header( @_, $total_time ); &prt_to_stderr("###\n"); &prt_to_logfile("###\n"); } # footer sub timing() { push @Timer, ( new Benchmark ); # partial time $_[0] || ( return timestr( timediff( $Timer[$#Timer], $Timer[ ( $#Timer - 1 ) ] ) ) ); # total time return timestr( timediff( $Timer[$#Timer], $Timer[0] ) ); } # timing # sub max() { my $z = shift @_; foreach my $l (@_) { $z = $l if $l > $z } return $z; } # max sub min() { my $z = shift @_; foreach my $l (@_) { $z = $l if $l < $z } return $z; } # min # sub fill_right() { $_[0] . ( $_[2] x ( $_[1] - length( $_[0] ) ) ) } sub fill_left() { ( $_[2] x ( $_[1] - length( $_[0] ) ) ) . $_[0] } sub fill_mid() { my $l = length( $_[0] ); my $k = int( ( $_[1] - $l ) / 2 ); ( $_[2] x $k ) . $_[0] . ( $_[2] x ( $_[1] - ( $l + $k ) ) ); } # fill_mid # sub counter { # $_[0]~current_pos++ $_[1]~char my $str; $str = "$_[1]"; ( ( $_[0] % 50 ) == 0 ) && ( $str .= " [" . &fill_left( $_[0], 6, "0" ) . "]\n" ); &prt_to_stderr($str); &prt_to_logfile($str); } # counter # sub counter_end { # $_[0]~current_pos $_[1]~char my $str; ( ( $_[0] % 50 ) != 0 ) && do { $str = " [" . &fill_left( $_[0], 6, "0" ) . "]\n"; &prt_to_stderr($str); &prt_to_logfile($str); } } # counter_end # # POSTSCRIPT CODE # sub ps_plot() { &report('PSPLOT'); # &ps_open_page; # &ps_block_aplot; # $Vars{LAYOUT}{show_percent_box} && &ps_block_percent; # $Vars{LAYOUT}{show_extra_box} && &ps_block_extra; # &ps_close_page; # &report('PSPLOTDONE'); } # ps_plot sub ps_block_aplot() { my $vlr = \%{ $Vars{LAYOUT} }; # &report( 'BLOCKTODO', 'APLOT-BOX' ); # $StringCache{ $vlr->{_x_sequence_name} } = {} if $vlr->{_plot_x_sequence}; $StringCache{ $vlr->{_y_sequence_name} } = {} if $vlr->{_plot_y_sequence}; $StringCache{ $vlr->{_alignment_name} } = '' if $vlr->{_plot_aln}; # zoom area $vlr->{zoom_area} && do { my %kt; $kt{color} = defined( $vlr->{zoom_area_fill_color} ) ? "$vlr->{zoom_area_fill_color} " . &tobool($T) : &tobool($F); $kt{xo} = &max( $vlr->{_x_zoomarea_start}, $vlr->{_x_start} ); $kt{xe} = &min( $vlr->{_x_zoomarea_end}, $vlr->{_x_end} ); $kt{yo} = &max( $vlr->{_y_zoomarea_start}, $vlr->{_y_start} ); $kt{ye} = &min( $vlr->{_y_zoomarea_end}, $vlr->{_y_end} ); unshift @{ $SpecialCache{PRE} }, [ $kt{xo}, $kt{xe}, $kt{yo}, $kt{ye}, join ( " ", $vlr->{zoom_area_mark_color}, &get_units( $vlr->{zoom_area_mark_width} ), $vlr->{zoom_area_mark_style}, $kt{color}, $kt{xo}, $kt{xe}, $kt{yo}, $kt{ye} ) . " xbox" ]; }; # zoom_area # print STDOUT << '+++MAINProcs+++'; % %%%%%%%% START NEW PLOT % DoInit DoHeader % %%%%%%%% ALIGNMENT PLOT - BOX % begindata +++MAINProcs+++ # tag definitions: Box,Join,Arrow,Banner,Ribbons; &ps_plot_features( $vlr->{_x_sequence_name}, $T ) if $vlr->{_plot_x_sequence}; &ps_plot_features( $vlr->{_y_sequence_name}, $F ) if $vlr->{_plot_y_sequence}; # nice ribbon lines finishing &ps_plot_outlines( $vlr->{_x_sequence_name}, $T ) if $vlr->{_plot_x_sequence}; &ps_plot_outlines( $vlr->{_y_sequence_name}, $F ) if $vlr->{_plot_y_sequence}; # extras: PRE (under aln features) &ps_plot_addons('PRE') if scalar( @{ $SpecialCache{PRE} } ) > 0; # alignment &ps_plot_aln( $vlr->{_alignment_name} ) if $vlr->{_plot_aln}; # extras: POST (over aln features) &ps_plot_addons('POST') if scalar( @{ $SpecialCache{POST} } ) > 0; # print STDOUT "\%\nenddata\n\%\n"; &report( 'BLOCKDONE', 'APLOT-BOX' ); } # ps_block_aplot sub ps_plot_features() { my ( $seq, $flg ) = @_; my ( $src, $str, $grp, $qlst, $slst, $nlst, $glst, $elst, @rflst, %this, $vaf, $go, $orf, $what ); $vaf = \%{ $Vars{LAYOUT} }; ( $go, $orf ) = &get_ordered_ary( 'GFF', $seq ); $what = $flg ? 'X-sequence' : 'Y-sequence'; &report( 'BLOCKXY', $what, $seq ); $go && do { print STDOUT "\%\n\%\%\%\% DATA ---> $what Annotations\n\%\n" . ( $flg ? 'beginXseq' : 'beginYseq' ) . "\n"; $qlst = \@{ $GFF_DATA{$seq} }; for ( my $a = 0 ; $a <= $#{$orf} ; $a++ ) { $src = $orf->[$a][0]; $slst = \@{ $qlst->[$_element]{$src} }; &show_element($slst) || next; # source:{hide} for ( my $b = 0 ; $b <= $#{ $orf->[$a][1] } ; $b++ ) { $str = $orf->[$a][1][$b][0]; $nlst = \@{ $slst->[$_element]{$str} }; &show_element($nlst) || next; # strand:{hide} for ( my $c = 0 ; $c <= $#{ $orf->[$a][1][$b][1] } ; $c++ ) { $grp = $orf->[$a][1][$b][1][$c]; $glst = \@{ $nlst->[$_element]{$grp} }; &show_element($glst) || next; # group:{hide} $this{go} = $glst->[$_counter][$_ori]; $this{ge} = $glst->[$_counter][$_end]; $this{sflag} = $flg ? &check_seqlim( $this{go}, $this{ge}, $vaf->{_x_start}, $vaf->{_x_end} ) : &check_seqlim( $this{go}, $this{ge}, $vaf->{_y_start}, $vaf->{_y_end} ); $this{sflag} && do { for ( my $d = 0 ; $d < $glst->[$_counter][$_elemNum] ; $d++ ) { $elst = \@{ $glst->[$_element][$d] }; &show_element($elst) || next; # feature:{hide} $this{so} = $elst->[$_ftori]; $this{se} = $elst->[$_ftend]; $this{sflag} = $flg ? &check_seqlim( $this{so}, $this{se}, $vaf->{_x_start}, $vaf->{_x_end} ) : &check_seqlim( $this{so}, $this{se}, $vaf->{_y_start}, $vaf->{_y_end} ); $this{sflag} && do { @rflst = ( $elst, $glst, $nlst, $slst, $qlst ); # ( $this{strnd}, undef ) = split //o, $str, 2; # setting score $this{sco} = &norm_score( $elst->[$_ftsco], $qlst->[$_counter][$_mnsco], $qlst->[$_counter][$_mxsco] ); # {feature_color} {feature_scale_color} {feature_scale_heigth} $this{col} = &get_var_value( 'feature_color', \@rflst ); $this{colscl} = &tobool( &get_var_value( 'feature_scale_color', \@rflst ) ); $this{col} =~ /$gradregex/o && do { $this{col} = "$this{sco} $this{col}"; $this{colscl} = &tobool($F); }; $this{col} .= " " . $this{colscl} . " " . &tobool( &get_var_value( 'feature_scale_heigth', \@rflst ) ); # {feature_shape} $this{shape} = $Shapes{ &get_var_value( 'feature_shape', \@rflst ) }; # {feature_label} {show_feature_label} $this{lbl_tmp} = &get_var_value( 'feature_label', \@rflst ); $this{lbl_flg} = &get_var_value( 'show_feature_label', \@rflst ); $this{lbl} = $this{lbl_flg} ? ( ( defined( $elst->[$_ftid] ) && $elst->[$_ftid] ne '' ) ? "($elst->[$_ftid]) _t" : ( ( defined( $this{lbl_tmp} ) && $this{lbl_tmp} ne '' ) ? "($this{lbl_tmp}) _t" : "(" . ( $d + 1 ) . ") _t" ) ) : "_f"; # defined($this{lbl_tmp}) # {show_ribbons} {ribbon_style} @{ $this{rbnsty} } = @{ $Ribbons{ &get_var_value( 'ribbon_style', \@rflst ) } }; ( !$this{rbnsty}[0] && $this{rbnsty}[1] ) && ( $this{rbnflg} = $T ); $this{rbnflg} = &get_var_value( 'show_ribbons', \@rflst ); ( !$this{rbnsty}[0] && !$this{rbnsty}[1] ) && ( $this{rbnflg} = $F ); # print STDOUT "\/$this{shape} $this{col} $this{lbl} " . "$this{sco} $this{so} $this{se} ($this{strnd}) shp\n"; # {ribbon_color} $this{rbnflg} && do { $this{col} = &get_var_value( 'ribbon_color', \@rflst ); $this{rbnsty}[0] && do { defined( $StringCache{$seq}{rbn} ) || ( $StringCache{$seq}{rbn} = '' ); $StringCache{$seq}{rbn} .= "$this{so} $this{se} $this{col} rbx\n"; }; # style:show_ribbons $this{rbnsty}[1] && do { defined( $StringCache{$seq}{lns} ) || ( @{ $StringCache{$seq}{lns} } = () ); push @{ $StringCache{$seq}{lns} }, $this{so}, $this{se}; }; # style:show_ribbons }; # show_ribbons }; # check_nuclim for features }; # for $d @rflst = ( $glst, $nlst, $slst, $qlst ); # ( $this{strnd}, undef ) = split //o, $str, 2; # {group_color} {group_shape} {show_group_limits} $this{col} = &get_var_value( 'group_color', \@rflst ); $this{shape} = $GroupShapes{ &get_var_value( 'group_shape', \@rflst ) }; $this{grid_flg} = &tobool( &get_var_value( 'show_group_limits', \@rflst ) ); # {group_label} {show_group_label} $this{lbl_tmp} = &get_var_value( 'group_label', \@rflst ); $this{lbl_flg} = &get_var_value( 'show_group_label', \@rflst ); $this{lbl} = $this{lbl_flg} ? ( defined( $this{lbl_tmp} ) ? "($this{lbl_tmp}) _t" : "($grp) _t" ) : "_f"; # print STDOUT "\/$this{shape} $this{grid_flg} $this{col} $this{lbl} " . "$this{go} $this{ge} ($this{strnd}) grp\n"; # }; # check_nuclim for groups }; # for $c }; # for $b }; # for $a print STDOUT "endseq\n"; &ps_plot_ribbons( $seq, $flg ); }; # $go $go || &report( 'NOGFFDATA', $what ); } # ps_plot_features sub ps_plot_addons() { my $vky = shift; my $vsf = \%{ $Vars{LAYOUT} }; my %they; scalar( @{ $SpecialCache{$vky} } ) > 0 || return; &report('BLOCKFX'); print STDOUT "\%\n\%\%\%\% Extra features from custom files ($vky)...\n" . "\%\nbeginaln\n"; foreach my $ilm ( @{ $SpecialCache{$vky} } ) { ( $they{xo}, $they{xe}, $they{yo}, $they{ye}, $they{string} ) = @{$ilm}; ( &check_seqlim( $they{xo}, $they{xe}, $vsf->{_x_start}, $vsf->{_x_end} ) && &check_seqlim( $they{yo}, $they{ye}, $vsf->{_y_start}, $vsf->{_y_end} ) ) && do { print STDOUT "$they{string}\n"; }; # check_nuclim }; # foreach $ilm print STDOUT "endseq\n"; } # ps_plot_addons sub ps_plot_aln() { my ($aln) = @_; my ( $src, $str, $grp, $qlst, $slst, $nlst, $glst, $elst, @rflst, %this, $vaf, $go, $orf ); $vaf = \%{ $Vars{LAYOUT} }; ( $go, $orf ) = &get_ordered_ary( 'ALN', $aln ); $StringCache{$aln} = ''; &report( 'BLOCKA', $aln ); $go && do { print STDOUT "\%\n\%\%\%\% DATA ---> Alignment\n\%\nbeginaln\n"; $qlst = \@{ $ALN_DATA{$aln} }; for ( my $a = 0 ; $a <= $#{$orf} ; $a++ ) { $src = $orf->[$a][0]; $slst = \@{ $qlst->[$_element]{$src} }; &show_element($slst) || next; # source:{hide} for ( my $b = 0 ; $b <= $#{ $orf->[$a][1] } ; $b++ ) { $str = $orf->[$a][1][$b][0]; $nlst = \@{ $slst->[$_element]{$str} }; &show_element($nlst) || next; # strand:{hide} for ( my $c = 0 ; $c <= $#{ $orf->[$a][1][$b][1] } ; $c++ ) { $grp = $orf->[$a][1][$b][1][$c]; $glst = \@{ $nlst->[$_element]{$grp} }; &show_element($glst) || next; # group:{hide} for ( my $d = 0 ; $d < $glst->[$_counter][$_elemNum] ; $d++ ) { $elst = \@{ $glst->[$_element][$d] }; &show_element($elst) || next; # feature:{hide} if ( $vaf->{_swap_aln} ) { $this{xo} = $elst->[$_ftnori]; $this{xe} = $elst->[$_ftnend]; $this{yo} = $elst->[$_ftori]; $this{ye} = $elst->[$_ftend]; } else { $this{xo} = $elst->[$_ftori]; $this{xe} = $elst->[$_ftend]; $this{yo} = $elst->[$_ftnori]; $this{ye} = $elst->[$_ftnend]; } $this{aflag} = ( &check_seqlim( $this{xo}, $this{xe}, $vaf->{_x_start}, $vaf->{_x_end} ) && &check_seqlim( $this{yo}, $this{ye}, $vaf->{_y_start}, $vaf->{_y_end} ) ); $this{aflag} && do { ( $this{xn}, $this{yn} ) = ( split //o, $str ); defined( $this{yn} ) || ( $this{yn} = $this{xn} ); $this{xn} eq '-' && do { ( $this{xo}, $this{xe} ) = ( $this{xe}, $this{xo} ); }; $this{yn} eq '-' && do { ( $this{yo}, $this{ye} ) = ( $this{ye}, $this{yo} ); }; @rflst = ( $elst, $glst, $nlst, $slst, $qlst ); # {alignment_color} {alignment_scale_color} {alignment_scale_width} $this{col} = &get_var_value( 'alignment_color', \@rflst ) . " " . &tobool( &get_var_value( 'alignment_scale_color', \@rflst ) ) . " " . &tobool( &get_var_value( 'alignment_scale_width', \@rflst ) ); $this{sco} = &norm_score( $elst->[$_ftsco], $vaf->{_aln_min_score}, $vaf->{_aln_max_score} ); print STDOUT "$this{xo} $this{yo} $this{xe} $this{ye}" . " $this{col} $this{sco} aln\n"; $vaf->{show_percent_box} && do { $this{ysc} = $elst->[$_ftsco]; &check_inlim( $this{ysc}, $vaf->{_pbox_min_score}, $vaf->{_pbox_max_score} ) && do { $StringCache{$aln} .= "$this{xo} $this{ysc} $this{xe} $this{ysc}" . " $this{col} $this{sco} aln\n"; }; # if check_inlim(ysc) }; # show_percent_box }; # check_nuclim aln }; # for $d }; # for $c }; # for $b }; # for $a print STDOUT "endseq\n"; }; # $go $go || &report('NOAPLOTDATA'); } # ps_plot_aln sub ps_block_percent() { my $vlr = \%{ $Vars{LAYOUT} }; &report( 'BLOCKTODO', 'PERCENT-BOX' ); print STDOUT << "+++MAINProcs+++"; % %%%%%%%% MATCHES PERCENT - BOX % beginmatches % +++MAINProcs+++ $vlr->{_plot_x_sequence} && do { &ps_plot_ribbons( $vlr->{_x_sequence_name}, $T ); &ps_plot_outlines( $vlr->{_x_sequence_name}, $T ); }; # show_ribbons && _plot_x_sequence ( $vlr->{show_percent_box_grid} && !$vlr->{show_grid} ) && do { print STDOUT "\%\npvtick\n"; }; # show_percent_box_grid $vlr->{_plot_aln} && do { &ps_plot_pctaln( $vlr->{_alignment_name} ); }; # _plot_aln print STDOUT "\%\nendmatches\n\%\n"; &report( 'BLOCKDONE', 'PERCENT-BOX' ); } # ps_block_percent sub ps_plot_pctaln() { my ($aln) = @_; &report( 'BLOCKA', $aln ); print STDOUT "\%\n\%\%\%\% DATA ---> Alignment\n\%\nbeginaln\n"; print STDOUT $StringCache{$aln}; print STDOUT "endseq\n"; } # ps_plot_pctaln sub ps_block_extra() { my $vlr = \%{ $Vars{LAYOUT} }; &report( 'BLOCKTODO', 'EXTRA-BOX' ); print STDOUT << "+++MAINProcs+++"; % %%%%%%%% EXTRA DATA - BOX % % numlines <- vlr->{_x_sequence_sources} % NGROUPS beginextra % +++MAINProcs+++ $vlr->{_plot_x_sequence} && do { &ps_plot_ribbons( $vlr->{_x_sequence_name}, $T ); &ps_plot_outlines( $vlr->{_x_sequence_name}, $T ); }; # show_ribbons && _plot_x_sequence print STDOUT "\%\nendextra\n\%\n"; &report( 'BLOCKDONE', 'EXTRA-BOX' ); } # ps_block_extra sub ps_plot_ribbons() { my ( $seq, $flg ) = @_; defined( $StringCache{$seq}{rbn} ) && do { my $what = $flg ? 'X-sequence' : 'Y-sequence'; &report( 'BLOCKRB', $what ); print STDOUT "\%\n\%\%\%\% $what Ribbons\n\%\n" . ( $flg ? 'beginXseq' : 'beginYseq' ) . "\n"; print STDOUT $StringCache{$seq}{rbn}; print STDOUT "endseq\n"; }; # defined ribbons } # ps_plot_ribbons sub ps_plot_outlines() { my ( $seq, $flg ) = @_; ( defined( $StringCache{$seq}{lns} ) && scalar( @{ $StringCache{$seq}{lns} } ) > 0 ) && do { my $what = $flg ? 'X-sequence' : 'Y-sequence'; &report( 'BLOCKRBL', $what ); print STDOUT "\%\n\%\%\%\% Finishing $what Ribbons\n\%\n" . ( $flg ? 'beginXseq' : 'beginYseq' ) . "\n"; $n = 0; foreach my $pos ( @{ $StringCache{$seq}{lns} } ) { ( $n % 10 == 0 ) && print STDOUT '[ '; print STDOUT "$pos "; $n++; ( $n % 10 == 0 ) && print STDOUT "Rln\n"; }; # foreach $pos ( $n % 10 != 0 ) && print STDOUT "Rln\n"; print STDOUT "endseq\n"; }; # defined ribbons lines } # ps_plot_outlines sub get_ordered_ary() { my ( $main, $name ) = @_; my ( $k, $h ); for ( $k = 0 ; $k <= $#{ $Order{$main} } ; $k++ ) { $h = $Order{$main}[$k][0]; $h eq $name && do { return ( $T, \@{ $Order{$main}[$k][1] } ); }; } return ( $F, undef ); } # get_ordered_ary sub show_element() { my $rf = shift; ( defined( $rf->[$_prop]{hide} ) && $rf->[$_prop]{hide} ) && return $F; return $T; } # show_element sub check_seqlim() { my ( $o, $e, $O, $E ) = @_; ( $o < $E && $e > $O ) && return $T; return $F; } # check_seqlim sub check_inlim() { my ( $p, $l, $u ) = @_; ( $p >= $l && $p <= $u ) && return $T; return $F; } # check_inlim sub get_var_value() { my ( $name, $refs ) = @_; my ( $out, $v ); # print STDERR ("#"x40)."\n"; foreach $v (qw/ FEATURE GROUP STRAND SOURCE SEQUENCE /) { defined( $Defaults{$v}{$name} ) && ( $out = $Defaults{$v}{$name} ); # print STDERR "### GET VAR VALUE: $v ($name) : ". # (defined($Defaults{$v}{$name})?$Defaults{$v}{$name}:"undef")."\n"; }; # foreach foreach $v (@$refs) { defined( $v->[$_prop]{$name} ) && ( $out = $v->[$_prop]{$name} ); # print STDERR "### GET VAR VALUE: $v ($name) : ". # (defined($v->[$_prop]{$name})?$v->[$_prop]{$name}:"undef")."\n"; }; # foreach ( defined( $Vars{LAYOUT}{$name} ) && ( !defined( $Defaults{LAYOUT}{$name} ) || $Vars{LAYOUT}{$name} ne $Defaults{LAYOUT}{$name} ) ) && ( $out = $Vars{LAYOUT}{$name} ); # print STDERR "### GET VAR VALUE: Vars{LAYOUT} ($name) : ". # (defined($Vars{LAYOUT}{$name})?$Vars{LAYOUT}{$name}:"undef")."\n". # "### GET VAR VALUE: Defaults{LAYOUT} ($name) : ". # (defined($Defaults{LAYOUT}{$name})?$Defaults{LAYOUT}{$name}:"undef")."\n"; # print STDERR "### GET VAR VALUE: $name = ".(defined($out)?$out:"undef")."\n"; return $out; } # get_var_value sub norm_score() { my ( $score, $minsco, $maxsco ) = @_; $minsco == $maxsco && return 1; $score < $minsco && ( $score = $minsco ); $score > $maxsco && ( $score = $maxsco ); return sprintf( "%5.3f", ( ( $score - $minsco ) / ( $maxsco - $minsco ) ) ); } # norm_score sub ps_header() { my $vr = \%{ $Vars{LAYOUT} }; print STDOUT << "+++HEADER+++"; %!PS-Adobe-3.0 %%Title: $vr->{title} %%Creator: $PROGRAM %%Version: $VERSION %%CreationDate: $DATE %%For: $USER %%Pages: 1 %%Orientation: Portrait %%BoundingBox: 0 0 $vr->{_page_width} $vr->{_page_height} %%EndComments % % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % % GFF2APLOT % % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % % Converting alignments in GFF format to PostScript dotplots. % % Copyright (C) 1999-2003 - Josep Francesc ABRIL FERRANDO % Thomas WIEHE % Roderic GUIGO SERRA % % This program is free software; you can redistribute it and/or modify % it under the terms of the GNU General Public License as published by % the Free Software Foundation; either version 2 of the License, or % (at your option) any later version. % % This program is distributed in the hope that it will be useful, % but WITHOUT ANY WARRANTY; without even the implied warranty of % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the % GNU General Public License for more details. % % You should have received a copy of the GNU General Public License % along with this program; if not, write to the Free Software % Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA. % % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % % $LAST_UPDATE % % Report BUGS to: jabril\@imim.es % %%BeginProlog % %%BeginProcSet: Short_names 1.0 0 % /B { bind def } bind def /X { exch def } B /D { def } B /_t { true } B /_f { false } B /S { gsave } B /R { grestore } B /F { scale } B /T { translate } B /m { moveto } B /rm { rmoveto } B /l { lineto } B /rl { rlineto } B /K { stroke } B /ie { ifelse } B /cmyk { setcmykcolor } B /slw { setlinewidth } B /solid { [ ] 0 setdash } D /dotted { [ 1 ] 0 setdash } D /ldotted { [ 1 2 ] 0 setdash } D /dashed { [ 3 3 ] 0 setdash } D /ldashed { [ 6 4 ] 0 setdash } D /ddashed { [ 4 3 1 3 ] 0 setdash } D % %%EndProcSet: Short_names 1.0 0 % %%BeginProcSet: Constants 1.0 0 % /pt { } B /cm { 28.35 mul } B /icm { 28.35 div } B /in { 72 mul } B /OST 0.25 cm D /OSB 0.25 cm D /OSL 0.25 cm D /OSR 0.25 cm D % %%EndProcSet: Constants 1.0 0 % %%BeginProcSet: Global_functions 1.0 0 % /vflg _f D /tflg @{[ &tobool($Debug) ]} D tflg { mark } if /msg { print (\\n) print flush } B /mst { print counttomark dup { dup index 20 string cvs print ( ) print 1 sub } repeat (\\n) print pop flush } B /msc { mst counttomark 1 add { pop } repeat } B /bbox { 4 copy 3 1 roll exch 6 2 roll 8 -2 roll m l l l closepath } B /obox { 2 div dup dup dup 7 1 roll 5 1 roll 3 1 roll add 7 1 roll add 6 1 roll sub 5 1 roll sub 4 1 roll bbox } B /ibox { 2 div dup dup dup 7 1 roll 5 1 roll 3 1 roll sub 7 1 roll sub 6 1 roll add 5 1 roll add 4 1 roll bbox } B /min { 2 copy gt { exch } if pop } B /max { 2 copy lt { exch } if pop } B /clim { min max } B /zlim { dup 0 eq { 3 { pop } repeat 0 } { clim } ie } B /hip { dup mul exch dup mul add sqrt } B % %%EndProcSet: Global_functions 1.0 0 % %%BeginProcSet: Text_functions 1.0 0 % /sfnt { findfont exch scalefont setfont } B /glblw { sfnt (Z) stringwidth pop mul } B /chrh { S newpath 0 0 m _f charpath flattenpath pathbbox exch pop 3 -1 roll pop R } B /strh { 2 dict begin /lly 0.0 D /ury 0.0 D { ( ) dup 0 4 -1 roll put chrh dup ury gt { /ury X } { pop } ie dup lly lt { /lly X } { pop } ie } forall ury end } B /ttshw { vflg { 9 copy 8 { pop } repeat mark exch dup length 20 gt { 0 20 getinterval (...) } if (ttshw -> ) msc } if S cmyk sfnt 8 dict begin /h X /v X /lbl X /angle X /y X /x X /hs lbl stringwidth pop D /vs lbl strh D x y T angle rotate h (rh) eq { hs } { h (ch) eq { hs 2 div } { 0 } ie } ie neg v (tv) eq { vs } { v (cv) eq { vs 2 div } { 0 } ie } ie neg m lbl show end R } B % %%EndProcSet: Text_functions 1.0 0 % %%BeginProcSet: Pseudohash_dicts 1.0 0 % +++HEADER+++ &report('PSHEADER'); } # ps_header sub ps_colors() { my ( $colornum, $j, @tmp, @colary, @gradary ); @tmp = (); @colary = (); @gradary = (); @colary = ( keys %{ $USED{'COLORS'} } ); ($Debug) && ( @colary = ( keys %COLORS ) ); @gradary = ( keys %{ $USED{'GRADIENTS'} } ); ($Debug) && ( @gradary = ( keys %GRADIENTS ) ); $colornum = scalar(@colary) + scalar(@gradary); # &min(scalar(@colary), $colors); print STDOUT "%% Fixed Color Variables (CMYK)\n"; print STDOUT "/colordict " . ( $colornum + 28 ) . " dict D colordict begin %% using " . $colornum . " colors + 28 definitions\n"; @tmp = map { $_->[1] } sort { $a->[0] <=> $b->[0] } map { [ $COLORS{$_}->[0], $_ ] } @colary; # print STDERR "### colary: @colary\n### colary-tmp: @tmp\n"; for ( $j = 0 ; $j <= $#tmp ; $j++ ) { my $name = $tmp[$j]; my $ref = \$COLORS{$name}; my $cmyk = "$$ref->[1] $$ref->[2] $$ref->[3] $$ref->[4]"; print STDOUT "/" . $name . " { $cmyk } D"; # (&fill_right($name,20," ")) print STDOUT ( ( $j % 5 == 0 && $j > 0 ) ? "\n" : " " ); }; # for $j print STDOUT "\n" if ( $j % 5 > 0 ); &ps_color_gradients( \@gradary ) if scalar(@gradary) > 0; print STDOUT "end %% colordict\n"; &ps_color_pattern; &report('PSCOLORS'); } # ps_colors sub ps_color_gradients() { my $gary = shift; foreach my $gr (@$gary) { print STDOUT "$GRADIENTS{$gr}\n"; } } # ps_color_gradients sub ps_color_pattern() { print STDOUT "%% Ribbon color mode (cmyk/pattern)\n"; $Vars{LAYOUT}{ribbon_color_merge} || do { print STDOUT '/rbxcol { cmyk } B' . "\n"; return; }; $Vars{LAYOUT}{color_merge_factor} = &max( 0.07, &min( 2, $Vars{LAYOUT}{color_merge_factor} ) ); print STDOUT '/PG ' . $Vars{LAYOUT}{color_merge_factor} . ' D % "alpha" color blending factor ' . "\n"; print STDOUT << '+++PatternProcs+++'; /PS PG 2 mul D << /PaintType 2 /PatternType 1 /TilingType 1 /BBox [ PG neg PG neg PG PG ] /XStep PS /YStep PS /PaintProc { pop PG slw 0 setlinecap PG 2 div 0 m 0 PG rl K PG 2 div neg 0 m 0 PG neg rl K } >> matrix makepattern /HP X << /PaintType 2 /PatternType 1 /TilingType 1 /BBox [ PG neg PG neg PG PG ] /XStep PS /YStep PS /PaintProc { pop PG slw 0 setlinecap PG 2 div neg 0 m 0 PG rl K PG 2 div 0 m 0 PG neg rl K } >> matrix makepattern /VP X [ /Pattern /DeviceCMYK ] setcolorspace /rbxcol { H { HP } { VP } ie setcolor } B +++PatternProcs+++ } # ps_color_pattern sub ps_page_formats() { my ( $formatnum, $j, @tmp, @fmtary ); @tmp = (); @fmtary = (); @fmtary = ( keys %{ $USED{FORMATS} } ); ($Debug) && ( @fmtary = ( keys %FORMATS ) ); $formatnum = scalar(@fmtary); # &min(scalar(@fmtary), $formats); print STDOUT "%% Paper Sizes (in points)\n"; print STDOUT "/pagedict " . ( $formatnum + 2 ) . " dict D pagedict begin %% " . $formatnum . " formats + 2 definitions\n"; @tmp = map { $_->[1] } sort { $a->[0] <=> $b->[0] } map { [ $FORMATS{$_}->[0], $_ ] } @fmtary; for ( $j = 0 ; $j <= $#tmp ; $j++ ) { my $name = $tmp[$j]; my $ref = \$FORMATS{$name}; my $pgsz = "$$ref->[1] $$ref->[2]"; # &fill_left($$ref->[1],4," ").&fill_left($$ref->[2],5," "); print STDOUT "/pg" . $name . "{ $pgsz } D"; # (&fill_right($name,10," ")) print STDOUT ( ( $j % 5 == 0 && $j > 0 ) ? "\n" : " " ); } print STDOUT "\n" if ( $j % 5 > 0 ); print STDOUT "end %% pagedict\n"; &report('PSFORMATS'); } # ps_page_formats sub ps_variables() { my $vr = \%{ $Vars{LAYOUT} }; print STDOUT << "+++PSVARS+++"; % %%EndProcSet: Pseudohash_dicts 1.0 0 % tflg { (%%% Basic settings and functions were defined %%%) msg } if % %%BeginProcSet: Setting_Vars 1.0 0 % tflg { (%%% Setting variables %%%) msg } if /H _t D /HT { /H _t D } B /VT { /H _f D } B /flgcrd @{[ &tobool(! $vr->{hide_credits}) ]} D /flglscape @{[ &tobool($F) ]} D /Pb @{[ &tobool($vr->{show_percent_box}) ]} D /Qb @{[ &tobool($vr->{show_extra_box}) ]} D /axesb @{[ &tobool($vr->{aplot_xy_same_length}) ]} D /XYR $vr->{aplot_xy_scale} D /ZM @{[ &tobool($vr->{zoom_marks}) ]} D /Dpage { pagedict begin pg$vr->{page_size} flglscape { exch } if end } D /PPC pagedict begin pga4 end hip Dpage hip exch div D /Ch 4 pt 15 pt 4 pt PPC mul clim D /MT @{ $vr->{margin_top} } D /MB @{ $vr->{margin_bottom} } D /ML @{ $vr->{margin_left} } D /MR @{ $vr->{margin_right} } D /bg { colordict begin @{[ ($vr->{background_color} ne 'bg') ? $vr->{background_color} : 'white' ]} end } D /fg { colordict begin @{[ ($vr->{foreground_color} ne 'fg') ? $vr->{foreground_color} : 'black' ]} end } D /ABc { colordict begin $vr->{aplot_box_bgcolor} end } D /PBc { colordict begin $vr->{percent_box_bgcolor} end } D /QBc { colordict begin $vr->{extra_box_bgcolor} end } D /XO $vr->{_x_start} D /XE $vr->{_x_end} D /XD XE XO sub 1 add D /YO $vr->{_y_start} D /YE $vr->{_y_end} D /YD YE YO sub 1 add D /PO $vr->{_pbox_min_score} D /PE $vr->{_pbox_max_score} D /PD PE PO sub D /QO 0 D /QE 1 D /QD PE PO sub D /Ph @{ $vr->{percent_box_height} } D /Qh @{ $vr->{extra_box_height} } D /KGb @{[ &tobool($vr->{show_grid}) ]} D /KLb @{[ &tobool($vr->{show_tickmark_label}) ]} D /KAXb @{[ &tobool($vr->{show_aplot_x_ticks}) ]} D /KAYb @{[ &tobool($vr->{show_aplot_y_ticks}) ]} D /KPXb @{[ &tobool($vr->{show_percent_x_ticks}) ]} D /KPYb @{[ &tobool($vr->{show_percent_y_ticks}) ]} D /KQXb @{[ &tobool($vr->{show_extrabox_x_ticks}) ]} D /KQYb @{[ &tobool($vr->{show_extrabox_y_ticks}) ]} D /KASm $vr->{major_tickmark_nucleotide} D /KASn $vr->{minor_tickmark_nucleotide} D /KPSm $vr->{major_tickmark_score} D /KPSn $vr->{minor_tickmark_score} D /KQSm 10 D /KQSn 10 D /TTLb @{[ &tobool($vr->{show_title}) ]} D /TTLl @{[ &tostring($vr->{title}) ]} D /TTLz @{ $vr->{title_fontsize} } D /TTLf { TTLz $Fonts{$vr->{title_font}} } D /TTLp 10 pt 25 pt TTLz 2 div zlim D /TTlb @{[ &tobool($vr->{show_subtitle}) ]} D /TTll @{[ &tostring($vr->{subtitle}) ]} D /TTlz @{ $vr->{subtitle_fontsize} } D /TTlf { TTlz $Fonts{$vr->{subtitle_font}} } D /TTlp 10 pt 20 pt TTlz zlim D /XSLb @{[ &tobool($vr->{show_x_label}) ]} D /XSLl @{[ &tostring($vr->{x_label}) ]} D /XSLz @{ $vr->{x_label_fontsize} } D /XSLf { XSLz $Fonts{$vr->{x_label_font}} } D /XSLp 2.5 pt 10 pt XSLz 0.25 mul zlim D /YSLb @{[ &tobool($vr->{show_y_label}) ]} D /YSLl @{[ &tostring($vr->{y_label}) ]} D /YSLz @{ $vr->{y_label_fontsize} } D /YSLf { YSLz $Fonts{$vr->{y_label_font}} } D /YSLp 2.5 pt 10 pt YSLz 0.25 mul zlim D /PBLb @{[ &tobool($vr->{show_percent_box_sublabel}) ]} D /PBLl @{[ &tostring($vr->{percent_box_label}) ]} D /PBLz @{ $vr->{percent_box_label_fontsize} } D /PBLf { PBLz $Fonts{$vr->{percent_box_label_font}} } D /PBLp 10 pt 20 pt PBLz zlim D /PBlb @{[ &tobool($vr->{show_percent_box_sublabel}) ]} D /PBll @{[ &tostring($vr->{percent_box_sublabel}) ]} D /PBlz @{ $vr->{percent_box_sublabel_fontsize} } D /PBlf { PBlz $Fonts{$vr->{percent_box_sublabel_font}} } D /PBlp 10 pt 20 pt PBlz zlim D /QBLb @{[ &tobool($vr->{show_extra_box_label}) ]} D /QBLl @{[ &tostring($vr->{extra_box_label}) ]} D /QBLz @{ $vr->{extra_box_label_fontsize} } D /QBLf { QBLz $Fonts{$vr->{extra_box_label_font}} } D /QBLp 10 pt 20 pt QBLz zlim D /QBlb @{[ &tobool($vr->{show_extra_box_sublabel}) ]} D /QBll @{[ &tostring($vr->{extra_box_sublabel}) ]} D /QBlz @{ $vr->{extra_box_sublabel_fontsize} } D /QBlf { QBlz $Fonts{$vr->{extra_box_sublabel_font}} } D /QBlp 10 pt 20 pt QBlz zlim D /FTz @{ $vr->{feature_label_fontsize} } D /FTf { FTz $Fonts{$vr->{feature_label_font}} } D /FTp 2 pt 10 pt FTz 0.5 mul zlim D /FTXw FTz 0 gt { $vr->{feature_x_label_length} FTf glblw } { 0 } ie D /FTXa $vr->{feature_x_label_angle} D /FTXrb @{[ &tobool($vr->{feature_x_label_rotate}) ]} D /FTYw FTz 0 gt { $vr->{feature_y_label_length} FTf glblw } { 0 } ie D /FTYa $vr->{feature_y_label_angle} D /FTYrb @{[ &tobool($vr->{feature_y_label_rotate}) ]} D /GPz @{ $vr->{group_label_fontsize} } D /GPf { GPz $Fonts{$vr->{group_label_font}} } D /GPp 4 pt 16 pt GPz 0.75 mul zlim D /GPpt GPp 0.25 mul D /GPXw GPz 0 gt { $vr->{group_x_label_length} GPf glblw } { 0 } ie D /GPXa $vr->{group_x_label_angle} D /GPXrb @{[ &tobool($vr->{group_x_label_rotate}) ]} D /GPYw GPz 0 gt { $vr->{group_y_label_length} GPf glblw } { 0 } ie D /GPYa $vr->{group_y_label_angle} D /GPYrb @{[ &tobool($vr->{group_y_label_rotate}) ]} D /DRh 10 pt D /DRhb DRh 0.1 mul D /DRht DRh DRhb sub D /DRFTlh DRh FTp add D /DRGPlh DRFTlh FTz add GPp add D /DRGPlnh DRGPlh GPpt 2 mul sub D /Blw 2 pt D /Alw 1 pt D /Clw 0.1 pt D /Clw2 Clw 2 mul D /BClw Blw Clw sub D /KLz 8 pt D /KLf { KLz /Helvetica } D /KWx 1.5 pt D /KWn KWx 0.1 mul D /KHx KLz 0.75 mul D /KHn KLz 0.50 mul D /KHt KLz 1.0 mul D /KLp KLz 0.5 mul D /KLh KHt KLz add KLp add D /KLw @{[ &max(length($vr->{_x_end}), length($vr->{_y_end}), length($vr->{_pbox_max_score})) ]} KLf glblw D % %%EndProcSet: Setting_Vars 1.0 0 % +++PSVARS+++ &report('PSVARS'); } # ps_variables sub ps_main() { print STDOUT << '+++MAINProcs+++'; %%BeginProcSet: Page_layout 1.0 0 % tflg { (%%% Computing page layout %%%) msg } if /MT MT OST max D /MB MB OSB max D /ML ML OSL max D /MR MR OSR max D /FL { Dpage MT MB add flgcrd { Ch add } if sub exch ML MR add sub exch } D /FXO ML D /FYO Dpage exch pop MT sub D /getXt { dup sin 0 eq { pop (ch) } { 90 sub cos 0 ge { (lh) } { (rh) } ie } ie } B /getYt { dup cos 0 eq { pop (cv) } { 90 sub sin 0 ge { (tv) } { (bv) } ie } ie } B /FTXh FTz FTXa cos mul FTXw FTXa sin abs mul add FTp add D /FTXt { FTXa getYt FTXa getXt } D /FTYh FTz FTYa cos mul FTYw FTYa sin abs mul add FTp add D /FTYt { FTYa getYt FTYa getXt } D /GPXh GPz GPXa cos mul GPXw GPXa sin abs mul add GPp add D /GPXt { GPXa getYt GPXa getXt } D /GPYh GPz GPYa cos mul GPYw GPYa sin abs mul add GPp add D /GPYt { GPYa getYt GPYa getXt } D /ATX GPXh GPp add FTXh FTp add add DRh add Blw add D /ATY GPYh GPp add FTYh FTp add add DRh add Blw add D /AXL YSLz YSLp add ATY add D /AXR FL pop KAYb KPYb or KQYb or { KLw KHt add sub } if D /AX AXR AXL sub D /AYT TTLz TTLp add TTlz TTlp add add XSLz XSLp add add ATX add D /AYB AYT AX add D /AY AX D XYR 0 le { /XYR 1 D } if axesb not { XYR 1 ge { /AY AY XYR div D } { /AX AX XYR mul D } ie } if /PYT AYB KAXb { KLb { KLh } { KHt } ie } { KLp } ie add D /rspc FL exch pop PYT sub Pb { KPXb { KLb { KLh } { KHt } ie } { KLp } ie sub } if Qb { KQXb { KLb { KLh KLp sub } { KHt } ie } if sub } if D /PY Pb { Ph 0 gt { 1.5 cm rspc Qb { 2 div } if Ph clim } { 2.0 cm } ie } { 0 } ie D /PYB PYT PY add D /QYT PYB Pb { KPXb { KLb { KLh } { KHt } ie } { KLp } ie add } if D /QY Qb { rspc Pb { PY sub } if Qh 0 gt { 2 cm exch Qh clim } if } { 0 } ie D /QYB QYT QY add D % %%EndProcSet: Page_Layout 1.0 0 % % %%BeginProcSet: Aplot_dict 1.0 0 % tflg { (%%% Setting aplot dictionary %%%) msg } if /aplotdict 120 dict D aplotdict begin /Xscm { Xscale mul } B /Xscme { Xscm exch } B /Yscm { Yscale mul } B /Yscme { Yscm exch } B /Hscm { H { Xscm } { Yscm } ie } B /rF { 1 exch dup 0 eq { pop 10 -9 exp } if div } B /Fm { Yscme Xscme m } B /Fl { Yscme Xscme l } B /corner { S 4 -2 roll m 0 0 4 1 roll 2 { S rl fg cmyk Blw slw [Blw 3] 0 setdash K R } repeat R } B /zoomtk { 1 dict begin /_ATX Pb Qb or { KLh } { ATX } ie D 4 copy 3 1 roll exch _ATX neg ATY corner ATX ATY neg corner ATX ATY corner _ATX neg ATY neg corner end } D /gradcol { dup dup dup 7 1 roll 5 1 roll 3 1 roll mul 7 1 roll mul 6 1 roll mul 5 1 roll mul 4 1 roll } B /shp { S 7 dict begin /s_s X Hscm /s_e X Hscm /s_o X /s_p X /f_x { s_e s_o sub } D /s_m { f_x 2 div s_o add } D 0 BClw T { H { FTXa } { FTYa } ie s_m DRFTlh 4 -2 roll exch H { FTXt } { FTYt } ie FTf fg ttshw } if S s_o 0 T { DRht s_p mul DRhb add } { DRh } ie /f_y X f_x f_y F s_s (-) eq { 1 0 T -1 1 F } if { s_p gradcol } if cmyk cvx exec S fill R f_x rF f_y rF F fg cmyk Clw slw 2 setmiterlimit K R end R } B /rbx { S rbxcol H { YH neg } { AX neg } ie 3 1 roll Hscm 3 1 roll Hscm 0 Clw2 ibox fill R } B /rln { S fg cmyk Hscm H { YH neg } { AX neg } ie 0 3 -1 roll dup 4 1 roll exch m l Clw slw K R } B /Rln { counttomark { rln } repeat pop } B /grp { S 5 dict begin /s_s X Hscm /s_e X Hscm /s_o X /f_x { s_e s_o sub } D /s_m { f_x 2 div s_o add } D 0 BClw T { H { GPXa } { GPYa } ie s_m DRGPlh 4 -2 roll exch H { GPXt } { GPYt } ie GPf fg ttshw } if S cmyk { S s_o DRGPlnh s_o 0 s_e DRGPlnh s_e 0 2 { m l dotted Clw slw K } repeat R } if s_s (-) eq { s_e DRGPlnh T -1 1 F } { s_o DRGPlnh T } ie f_x exch Clw2 slw 2 setmiterlimit cvx exec R end R } B /aln { S dup 4 1 roll exch { Alw mul Alw add slw } { pop Alw slw } ie { gradcol } { pop } ie cmyk Fm Fl K R } B /xbox { S Yscme Yscme 4 -2 roll Xscme Xscm 4 1 roll exch bbox { S cmyk fill R } if cvx exec slw cmyk K R } B /xcir { S Yscme Xscme T rotate Yscme Xscme 2 copy 5 2 roll F 0 0 1 0 360 arc closepath { S 6 2 roll cmyk fill R } if 2 { 1 exch div exch } repeat F cvx exec slw cmyk K R } B /xtxt { S Yscme Xscme counttomark 2 roll not { fg } if ttshw pop R } B /xarw { S Yscme Xscme T dup neg counttomark 1 roll rotate 2 dict begin /la X /lb X cmyk 0 0 m lb 6 mul dup la gt { pop la 0.75 mul } if dup dup dup 3 div dup neg 3 1 roll l l closepath fill 0 m la 0 l lb slw K la lb add end 0 T 0 0 xtxt R } B /chktk { 3 dict begin /pk X /ck 0 D /ek 1 D { ck 5 gt { exit } if /ek 10 ck exp D pk ek mul cvi ek div pk eq { exit } if /ck ck 1 add D } loop ck end } B /mymod { 2 copy chktk exch chktk max dup 0 eq { pop 2 { cvi exch } repeat mod } { 1 dict begin /ff 10 3 -1 roll exp D 2 { ff mul round cvi exch } repeat mod ff div end } ie } B /rndtk { dup abs 10 -6 exp le { pop 0 } if } B /mkgrid { S 0 0 m rl fg cmyk { dashed KWn 2 mul slw } { ldotted KWn slw } ie K R } B /mjrtick { S 0 0 m { 0 KHx neg } { KHx 0 } ie rl KWx slw fg cmyk K R } B /mnrtick { S 0 0 m { 0 KHn neg } { KHn 0 } ie rl KWn slw fg cmyk K R } B /hticklbl { S 10 string cvs 0 KHt neg 0 4 -1 roll (tv) (ch) KLf fg ttshw R } B /htickslbl { S 10 string cvs (tv) 3 -1 roll ZM { { (lh) KHn } { (rh) KHn neg } ie } { pop (ch) 0 } ie KHt neg 0 6 -3 roll KLf fg ttshw R } B /htick { S 10 dict begin /tmn X /tmx X /te X /to X /yt X /lxo to to tmx mymod sub D /lxe tmx te tmx mymod sub te add D /lno to to tmn mymod sub D /lne tmn te tmn mymod sub te add D S /cnt lxo D to neg Xscm 0 T { cnt te ge { exit } if cnt to gt cnt te lt and { cnt Xscm S 0 T _t mjrtick KGb { _t 0 yt mkgrid } if cnt rndtk hticklbl R } if /cnt cnt tmx add D } loop R S /cnt lno D to neg Xscm 0 T { cnt te ge { exit } if cnt to gt cnt te lt and cnt tmx mymod 0 eq not and { cnt Xscm S 0 T _t mnrtick KGb { _f 0 yt mkgrid } if R } if /cnt cnt tmn add D } loop S to Xscm 0 T _t mjrtick _f to htickslbl R S te Xscm 0 T _t mjrtick _t te htickslbl R R end R } B /vticklbl { S 10 string cvs KHt 0 0 4 -1 roll (cv) (lh) KLf fg ttshw R } B /vtickslbl { S 10 string cvs KHt ZM { KHn } { 0 } ie 0 5 -1 roll ZM { { (bv) } { (bv) } ie } { pop (cv) } ie 5 -1 roll exch (lh) KLf fg ttshw R } B /vtick { S 10 dict begin /tmn X /tmx X /te X /to X /xt X /lxo to to tmx mymod sub D /lxe tmx te tmx mymod sub te add D /lno to to tmn mymod sub D /lne tmn te tmn mymod sub te add D xt 0 T S /cnt lxo D 0 to neg Yscm T { cnt te ge { exit } if cnt to gt cnt te lt and { cnt Yscm S 0 exch T _f mjrtick KGb { _t xt neg 0 mkgrid } if cnt rndtk vticklbl R } if /cnt cnt tmx add D } loop /cnt lno D { cnt te ge { exit } if cnt to gt cnt te lt and cnt tmx mymod 0 eq not and { cnt Yscm S 0 exch T _f mnrtick KGb { _f xt neg 0 mkgrid } if R } if /cnt cnt tmn add D } loop R S 0 to neg Yscm T S 0 to Yscm T _f mjrtick _f to vtickslbl R S 0 te Yscm T _f mjrtick _t te vtickslbl R R end R } B /pvtick { S 6 dict begin /tmx KPSm D /te PE D /to PO D /xt AX D /lxo to to tmx mymod sub D xt 0 T S /cnt lxo D 0 to neg Yscm T { cnt te ge { exit } if cnt to gt cnt te lt and { cnt Yscm S 0 exch T _t xt neg 0 mkgrid R } if /cnt cnt tmx add D } loop R end R } B /nucltick { XO XE KASm KASn htick } B /mkshp { m { l } repeat closepath } B /fbox { 0.0 1.0 1.0 1.0 1.0 0.0 3 0.0 0.0 mkshp } B /hbox { 0.0 0.5 1.0 0.5 1.0 0.0 3 0.0 0.0 mkshp } B /fraw { 0.75 0.0 0.75 -0.1 1.00 0.5 0.75 1.1 0.75 1.0 0.00 1.0 6 0.0 0.0 mkshp } B /hraw { 1.00 0.0 0.75 1.1 0.75 1.0 0.00 1.0 4 0.0 0.0 mkshp } B /flaw { 1 0 T -1 1 F fraw } B /hlaw { 1 0 T -1 1 F hraw } B /frae { 0.25 0.5 0.00 1.0 1.00 1.0 1.00 0.0 4 0.0 0.0 mkshp } B /hrae { 0.00 1.0 1.00 1.0 1.00 0.0 3 0.25 0.0 mkshp } B /flae { 1 0 T -1 1 F frae } B /hlae { 1 0 T -1 1 F hrae } B /frsg { 0.75 0.0 0.75 -0.1 1.00 0.5 0.75 1.1 0.75 1.0 0.00 1.0 0.25 0.5 7 0.00 0.0 mkshp } B /hrsg { 1.00 0.0 0.75 1.1 0.75 1.0 0.00 1.0 4 0.25 0.0 mkshp } B /flsg { 1 0 T -1 1 F frsg } B /hlsg { 1 0 T -1 1 F hrsg } B /frtn { 0.0 1.0 1.0 0.5 2 0.0 0.0 mkshp } B /hrtn { 0.0 1.0 1.0 0.0 2 0.0 0.0 mkshp } B /fltn { 1 0 T -1 1 F frtn } B /hltn { 1 0 T -1 1 F hrtn } B /futn { 0.5 1.0 1.0 0.0 2 0.0 0.0 mkshp } B /fdtn { 0.0 1.0 1.0 1.0 2 0.5 0.0 mkshp } B /fdmd { 0.0 0.5 0.5 1.0 1.0 0.5 3 0.5 0.0 mkshp } B /fmdm { 1.0 0.0 0.0 1.0 1.0 1.0 3 0.0 0.0 mkshp } B /fcir { 0.5 0.5 0.5 0 360 arc closepath } B /farc { 1 2 F 0.5 0 0.5 0 180 arc closepath } B /harc { 0.5 0 0.5 0 180 arc closepath } B /gmid { 2 div dup 0 m GPpt l } B /gbas { S { dotted } if 0 0 m 0 l K R } B /glns { dup _f gbas gmid K } B /glnd { dup _t gbas gmid K } B /gbrk { dup dup _f gbas gmid dup 0 m GPpt neg l 0 0 m 0 GPpt neg l K } B /gbrc { 4 dict begin /_l X /_lh _l 2 div D /_a GPpt 2 mul D /_b GPpt 4 mul D 0 GPpt neg m 0 _a sub _b _lh _b neg _lh GPpt curveto _l GPpt neg m _l _a add _b _lh _b neg _lh GPpt curveto K end } B /gseg { exch dup 3 -1 roll gbas dup gmid dup GPpt m GPpt neg l 0 GPpt m 0 GPpt neg l K } B /gsgm { _f gseg } B /gsgd { _t gseg } B /garw { 3 -1 roll dup 3 -1 roll gbas dup gmid 0 GPpt neg m 0 GPpt l K 0 T GPpt GPpt F { 0 0 m -2.5 1 l -2.5 -1 l closepath S fill R } { 0 0 m -2.5 1 l 0 0 m -2.5 -1 l } ie K } B /garh { 3 -1 roll dup 3 -1 roll gbas dup gmid 0 0 m 0 GPpt l K 0 T GPpt GPpt F { 0 0 m -2.5 1 l -2.5 0 l closepath S fill R } { 0 0 m -2.5 1 l } ie K } B /gsaw { _f _f garw } B /gsad { _f _t garw } B /gfaw { _t _f garw } B /gfad { _t _t garw } B /ghaw { _t _f garh } B /ghad { _t _t garh } B /ghsw { _f _f garh } B /ghsd { _f _t garh } B % /DoHeader { TTLb { S AXL TTLz neg 0 TTLl (bv) (lh) TTLf fg ttshw R } if TTlb { S AXL TTLz TTLp add TTlz add neg 0 TTll (bv) (lh) TTlf fg ttshw R } if } B /shwcrd { S 2 dict begin /Cz Ch 1 pt PPC 2 div mul sub D /Cf { Cz /Courier } D FL Ch add neg 2 copy 0 (This plot has been obtained using GFF2APLOT. The most recent version is freely available at \042http:\057\057genome.imim.es\057software\057gfftools\057GFF2APLOT.html\042. Copyright\040\0401999-2003 by Josep F. ABRIL, Thomas WIEHE & Roderic GUIGO) (bv) (rh) Cf fg ttshw exch S Cf sfnt (\0401999-2003 by Josep F. ABRIL, Thomas WIEHE & Roderic GUIGO) stringwidth pop sub R exch 0 (\343) (bv) (ch) Cz /Symbol fg ttshw end R } B /begindata { vflg { (### BEGINdata) msg } if S AXL AYB neg T S 0 0 AX AY 4 copy bbox ABc cmyk fill Blw obox fg cmyk Blw slw K R /Xscale AX XD div D /Yscale AY YD div D /YH AY D /YY YO D S KAXb { AY nucltick } if R S KAYb { AX YO YE KASm KASn vtick } if R S XSLb { AX 2 div AY ATX add XSLp add 0 XSLl (bv) (ch) XSLf fg ttshw } if YSLb { ATY YSLp add neg AY 2 div 90 YSLl (bv) (ch) YSLf fg ttshw } if R } B /enddata { ZM { S 0 0 AX AY zoomtk R /ZM _f D } if R vflg { (### ENDdata) msg } if } B /beginXseq { S 0 0 AX YH ATX add bbox clip newpath XO neg Xscm YH T colordict begin HT } B /beginYseq { S ATY neg 0 AX YH bbox clip newpath 0 YO neg Yscm T 90 rotate colordict begin VT } B /beginaln { S 0 Alw 2 div neg AX YH Alw add bbox clip newpath XO neg Xscm YY neg Yscm T colordict begin } B /endseq { end R } B /beginmatches { vflg { (### BEGINmatches) msg } if S AXL PYB neg T S 0 0 AX PY 4 copy bbox PBc cmyk fill Blw obox fg cmyk Blw slw K R /Yscale PY PD div D /YH PY D /YY PO D S KPXb { PY nucltick } if R S KPYb { AX PO PE KPSm KPSn vtick } if R S PBLb { DRFTlh PBlz add PBLp add neg PY 2 div 90 PBLl (bv) (ch) PBLf fg ttshw } if PBLb { DRFTlh neg PY 2 div 90 PBll (bv) (ch) PBlf fg ttshw } if R S } D /endmatches { R R vflg { (### ENDmatches) msg } if } D /beginextra { vflg { (### BEGINextra) msg } if S AXL QYB neg T S 0 0 AX QY 4 copy bbox QBc cmyk fill Blw obox fg cmyk Blw slw K R /Yscale QY D /YH QY D /YY QO D S KQXb { QY nucltick } if R S QBLb { DRFTlh QBlz add QBLp add neg PY 2 div 90 QBLl (bv) (ch) QBLf fg ttshw } if QBLb { DRFTlh neg PY 2 div 90 QBll (bv) (ch) QBlf fg ttshw } if R S } B /endextra { R R vflg { (### ENDextra) msg } if } D end % aplotdict % %%EndProcSet: Aplot_dict 1.0 0 % %%BeginProcSet: Openings 1.0 0 % /DoInit { tflg { (%%% START NEW PLOT %%%) msg /vflg _t D } if aplotdict begin Dpage 0 0 bbox S bg cmyk fill R clip newpath FXO FYO T tflg { S 0 0 FL neg bbox fg cmyk K R } if flgcrd { shwcrd } if } B /DoEnd { end tflg { (%%% PLOT DONE %%%) msg } if } B % %%EndProcSet: Openings 1.0 0 % % %%EndProlog % %%BeginSetup % % initgraphics % must not be used in EPS documents % _t setpacking _t setstrokeadjust 0.125 setlinewidth 0 setlinejoin 0 setlinecap % %%EndSetup % +++MAINProcs+++ &report('PSCODE'); } # ps_main sub ps_open_page() { print STDOUT << '+++OPEN+++'; %%Page: 1 1 %%BeginPageSetup % % Saving current page settings /pgsave save D % %%EndPageSetup % +++OPEN+++ } # ps_open_page sub ps_close_page() { print STDOUT << '+++CLOSE+++'; % DoEnd % %%%%%%%% PLOT DONE % % grestoreall % must not be used in EPS documents pgsave restore showpage % % Page: 1 1 %%PageTrailer % +++CLOSE+++ } # ps_close_page sub ps_trailer() { my $vr = \%{ $Vars{LAYOUT} }; print STDOUT << "+++EOF+++"; %%Trailer % %%Pages: 1 %%Orientation: Portrait %%BoundingBox: 0 0 $vr->{_page_width} $vr->{_page_height} %%EOF +++EOF+++ } # ps_trailer gff2aplot-2.0.orig/src/parseblast.pl0000644000000000000000000010755507667662606017462 0ustar rootroot00000000000000# # ################################################################## # # parseblast # # ################################################################## # # Extracting HSPs from blast programs output. # # Copyright (C) 2000-2003, Josep Francesc ABRIL FERRANDO # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; if not, write to the Free Software # Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA. # # ################################################################## # # $Id: parseblast.nw,v 1.9 2003/03/07 16:56:25 jabril Exp $ # use strict; # # use Getopt::Long; Getopt::Long::Configure("bundling"); # use Benchmark; my @exectime = (); &init_timer( \@exectime ); ############################################################################## ## GLOBAL VARS ## ############################################################################## # my $PROGRAM = "parseblast"; my $VERSION = "v2.0"; my $PLVER = sprintf( "v%vd", $^V ); my $DATE = localtime; my $CDATE = &get_date(); my ( $USER, $HOST ); if ( defined( $ENV{USER} ) ) { $USER = $ENV{USER}; } else { chomp( $USER = system("whoami") ); } if ( defined( $ENV{HOSTNAME} ) ) { $HOST = $ENV{HOSTNAME}; } else { chomp( $HOST = system("hostname") ); } # # FLAGS my ( $hsp_flg, $gff_flg, $fullgff_flg, $aplot_flg, $nogff_flg, $subject_flg, $sequence_flg, $full_scores, $comment_flg, $nocmmnt_flg, $split_flg, $help_flg, $ver_flg, $err_flg, $expanded_flg, $short_tgt_flg, $pairwise_flg, $msf_flg, $aln_flg, $bit_flg, $ids_flg, $noframe_flg ); my ( $prt, $main, $seqflg, $hsp, $fragment, $param, $aln_split, $prt_pos_flg ) = ( 0, 0, 0, 0, 0, 0, 0, 0 ); # # Parser Vars my ( $fs, $GFFfmt, $GFFtgs, $GFFtgl, $GFFtg ); my ( $prt_funct, $prog_params, $program, $version, $seqname ); my ( $scQ, $scS ); # reSCale_Query/Subject : 1 to re-scalate lengths. my ( $query_name, $db_name, $score, $descr, $ori, $end, $seq, $txt, $tt, $CT, $PT, $HT ); my ( @seqlist, %prgseq, %dbase, %query, %cnt, %desc, %sco, %hsp_start, %hsp_end, %hsp_seq ); my ( $qm, $sm, $x, $y, $ml, $a, $b, $aq, $as, $sql, $lq, $ls, $sq ); my $foe = 0; my $index = 0; my $chars_per_line = 50; # chars of sequences to show per line (in alignment modes) my ( $tlen, $clen ) = ( 54, 50 ); # # Formatting output as plain, HSPs, GFF, APLOT, ALN. my ( $n, $nm, $wnm, $tq, $ts, # couNter, NaMe, TagQuery, TagSubject $sc, $bt, $ex, $pv, $id, # SCore, BiTscore, EvalueX, IDentityscore $scores, # showing all scores $frq, $frs, # QueryFRame, SubjectFRame $stq, $sts, # QuerySTrand, SubjectSTrand $gsc, $prg, # GroupSCore, PRoGram $hsq, $hss, $heq, $hes, # HspStartQuery, HspStartSubject, HspEndQuery, HspEndSubject $lnq, $lns, $lnmin, $lnmax , # LeNgthQuery, LeNgthSubject, LeNgthMINqueyxsubject, LeNgthMAXqueyxsubject $lnmx, $gpq, $gps, $gpt # LeNgthMaXhspseq, GaPQuery, GaPSubject, GaPTotal ); ############################################################################## ## MAIN LOOP ## ############################################################################## # &get_commandline_opts(); # if help is ON no start header must be shown... &program_started("$PROGRAM $VERSION"); &parseblast(); &program_finished("$PROGRAM $VERSION"); exit(0); ############################################################################## ## Getting Comand-line Options ## ############################################################################## # sub get_commandline_opts() { GetOptions( "G|gff" => \$gff_flg, "F|fullgff" => \$fullgff_flg, "A|aplot" => \$aplot_flg, "S|subject" => \$subject_flg, "Q|sequence" => \$sequence_flg, "X|extended" => \$expanded_flg, "P|pairwise" => \$pairwise_flg, "M|msf" => \$msf_flg, "N|aln" => \$aln_flg, "W|show-coords" => \$prt_pos_flg, "b|bit-score" => \$bit_flg, "i|identity-score" => \$ids_flg, "s|full-scores" => \$full_scores, "u|no-frame" => \$noframe_flg, "t|compact-tags" => \$short_tgt_flg, "c|comments" => \$comment_flg, "n|no-comments" => \$nocmmnt_flg, "v|verbose" => \$err_flg, "version" => \$ver_flg, "h|help|\?" => \$help_flg ); # ($ver_flg) && &prt_version; ($help_flg) && &prt_help; # FLGS: { # first choose disables any other command-line option. $aln_flg && ( $expanded_flg = $msf_flg = $pairwise_flg = $hsp_flg = $comment_flg = 0, $nogff_flg = 1, last FLGS ); $msf_flg && ( $expanded_flg = $aln_flg = $pairwise_flg = $hsp_flg = $comment_flg = 0, $nogff_flg = 1, last FLGS ); $pairwise_flg && ( $expanded_flg = $aln_flg = $msf_flg = $hsp_flg = $comment_flg = 0, $nogff_flg = 1, last FLGS ); $gff_flg && ( $expanded_flg = $aln_flg = $msf_flg = $pairwise_flg = $fullgff_flg = $aplot_flg = $hsp_flg = 0, $nogff_flg = 0, last FLGS ); $fullgff_flg && ( $expanded_flg = $aln_flg = $msf_flg = $pairwise_flg = $gff_flg = $aplot_flg = $hsp_flg = 0, $nogff_flg = 0, last FLGS ); $aplot_flg && ( $expanded_flg = $aln_flg = $msf_flg = $pairwise_flg = $gff_flg = $fullgff_flg = $hsp_flg = 0, $nogff_flg = 0, last FLGS ); $expanded_flg && ( $aln_flg = $msf_flg = $pairwise_flg = $hsp_flg = 0, $nogff_flg = 1, last FLGS ); $hsp_flg = 1; $nogff_flg = 1; }; # FLGS # FLGS: { # first choose disables any other command-line option. $bit_flg && ( $ids_flg = 0, last FLGS ); $ids_flg && ( $bit_flg = 0 ); }; # $fs = $fullgff_flg ? "\t" : " "; $GFFfmt = ( ("\%s${fs}") x 8 ) . "\%s" . "\n"; $GFFtgs = " \%s \%s \%s \%s;${fs}"; $GFFtgl = ";${fs}Start \%s;${fs}End \%s;${fs}Strand \%s;${fs}Frame \%s;${fs}"; $GFFtg = $short_tgt_flg ? $GFFtgs : $GFFtgl; # $nocmmnt_flg && ( $comment_flg = 0 ); } # get_commandline_opts ############################################################################## ## Global Subroutines ## ############################################################################## # sub program_started() { my $prog = shift; print STDERR &header( "RUNNING $prog", '', "Host: $HOST", "User: $USER", "Perl: $PLVER", '', "Date: $DATE" ) if $err_flg; } # program_started sub program_finished() { my $prog = shift; my $txt = &timing( \@exectime, 1 ); $txt =~ s{^\s*(\d+)\s+wallclock\s+secs\s+(\()}{\n$2}o && do { $txt = sprintf( "Total Execution Time: %02d:%02d:%02d (%d secs)%s", sub { ( $_[2] - 1, $_[1], $_[0] ) } ->( localtime($1) ), $1, $txt ); }; print STDERR &header( "$prog HAS FINISHED", '', ( split /\n/, $txt ) ) if $err_flg; } # program_finished # sub header() { my @lns = @_; my $str = ( "#" x ( $tlen + 4 ) ) . "\n"; my $t = ( "#" x 2 ); my $comment = $str; foreach my $ln (@lns) { $comment .= "$t" . ( &fill_mid( $ln, $tlen, " " ) ) . "$t\n"; } return $comment . $str; } # header # sub fill_right { $_[0] . ( $_[2] x ( $_[1] - length( $_[0] ) ) ) } sub fill_left { ( $_[2] x ( $_[1] - length( $_[0] ) ) ) . $_[0] } sub fill_mid() { my $l = length( $_[0] ); my $k = int( ( $_[1] - $l ) / 2 ); return ( $_[2] x $k ) . $_[0] . ( $_[2] x ( $_[1] - ( $l + $k ) ) ); } # fill_mid # sub prt_progress { $err_flg && do { print STDERR "."; ( ( $_[0] % $clen ) == 0 ) && print STDERR "[" . &fill_left( $_[0], 6, "0" ) . "]\n"; }; } # prt_progress sub prt_foeprg { $err_flg && do { ( ( $_[0] % $clen ) != 0 ) && print STDERR "[" . &fill_left( $_[0], 6, "0" ) . "]\n"; }; } # prt_foeprg # sub max { my ($z) = shift @_; my $l; foreach $l (@_) { $z = $l if $l > $z; } return $z; } # max # # Timing. sub init_timer() { my $refary = shift; @{$refary} = ( new Benchmark ); return; } # init_timer sub timing() { my ( $refary, $tmp ) = @_; my $flg = defined($tmp) || 0; push @{$refary}, ( new Benchmark ); my $mx = $#{$refary}; # partial time $flg || do { return timestr( timediff( $refary->[$mx], $refary->[ ( $mx - 1 ) ] ) ); }; # total time return timestr( timediff( $refary->[$mx], $refary->[0] ) ); } # timing sub get_date() { return sprintf( "%04d%02d%02d%02d%02d%02d", sub { $_[5] + 1900, $_[4] + 1, $_[3], $_[2], $_[1], $_[0]; } ->(localtime) ); } # get_date # # Print help to STDERR. sub prt_version() { print STDERR "#\n# $PROGRAM $VERSION \n#\n"; exit(2); } # prt_version sub prt_help() { open( HELP, "| more" ); print HELP < DESCRIPTION: Filtering High-scoring Segment Pairs (HSPs) from WU/NCBI BLAST. Different output options are available, the most important here are those allowing to write HSPs in GFF format (GFFv1, GFFv2 or APLOT). Sequences can be included in the GFF records as a comment field. Furthermore, this script can output also the alignments for each HSP in ALN, MSF or tabular formats. NOTE.- If first line from blast program output (the one containing which flavour has been run, say here BLASTN, BLASTP, BLASTX, TBLASTN or TBLASTX), is missing, the program assumes that it contains BLASTN HSP records. So that, ensure that you feed the $PROGRAM script with a well formatted BLAST file. Sometimes there are no spaces between the HSP coords and its sequence, as it sometimes happens in Web-Blast or Paracel-Blast outputs. Now those records are processed ok and that HSP is retrieved as well as "standard" ones. WARNING.- Frame fields from GFF records generated with $PROGRAM contain BLAST frame (".","1","2","3") instead of the GFF standard values (".","0","1","2"). As the frame for reverse strand must be recalculated from the original sequence length, we suggest users to post-process the GFF output from this script with a suitable filter that fix the frames (in case that the program that is going to use the GFF records will not work with the original BLAST frames). We provide the command-line option "--no-frame" to set frames to "." (meaning that there is no frame). COMMAND-LINE OPTIONS: $PROGRAM prints output in "HSP" format by default (see below). It takes input from or single/multiple files, and writes its output to , so user can redirect to a file but he also could use the program as a filter within a pipe. "-N", "-M", "-P", "-G", "-F", "-A" and "-X" options (also the long name versions for each one) are mutually exclusive, and their precedence order is shown above. GFF OPTIONS: -G, --gff : prints output in GFFv1 format. -F, --fullgff : prints output in GFFv2 "alignment" format ("target"). -A, --aplot : prints output in pseudo-GFF APLOT "alignment" format. -S, --subject : projecting GFF output by SUBJECT (default by QUERY). -Q, --sequence : append query and subject sequences to GFF record. -b, --bit-score : set field to Bits (default Alignment Score). -i, --identity-score : set field to Identities (default Alignment). -s, --full-scores : include all scores for each HSP in each GFF record. -u, --no-frame : set all frames to "." (GFF for not available frames). -t, --compact-tags : target coords+strand+frame in short form (NO GFFv2!). ALIGNMENT OPTIONS: -P, --pairwise : prints pairwise alignment for each HSP in TBL format. -M, --msf : prints pairwise alignment for each HSP in MSF format. -N, --aln : prints pairwise alignment for each HSP in ALN format. -W, --show-coords : adds start/end positions to alignment output. GENERAL OPTIONS: -X, --expanded : expanded output (producing multiline output records). -c, --comments : include parameters from blast program as comments. -n, --no-comments : do not print "#" lines (raw output without comments). -v, --verbose : warnings sent to . --version : prints program version and exits. -h, --help : shows this help and exits. OUTPUT FORMATS: "S_" stands for "Subject_Sequence" and "Q_" for "Query_Sequence". name is taken from input blast file. are calculated from and positions on original blast file. is obtained from the blast file if is present else is set to ".". is set to Alignment Score by default, you can change it with "-b" and "-i". If "-S" or "--subject" options are given, then QUERY fields are referred to SUBJECT and SUBJECT fields are relative to QUERY (this only available for GFF output records). Dots ("...") mean that record description continues in the following line, but such record is printed as a single line record by $PROGRAM. [HSP] <- (This is the DEFAULT OUTPUT FORMAT) : ... ... ... ... : ... ... : ... ... : [GFF] hsp [FULL GFF] <- (GFF showing alignment data) hsp ... ... Target "" ... ... E_value Strand Frame [APLOT] <- (GFF format enhanced for APLOT program) : hsp : : ... ... : : : ... ... \# E_value [EXPANDED] MATCH(): x SCORE(): BITSC(): EXPEC(): Psum() IDENT(): / : \% T_GAP(): FRAME(): / STRND(): / MXLEN(): QUERY(): length : gaps : ... ... : : : SBJCT(): length : gaps : ... ... : : : BUGS: Report any problem to: abril\@imim.es AUTHOR: $PROGRAM is under GNU-GPL (C) 2000-2003, Josep F. Abril EndOfHelp close(HELP); exit(2); } # prt_help # print STDOUT "HSP:$hsp_flg GFF:$gff_flg COM:$comment_flg SPL:$split_flg HLP:$help_flg\n"; # # Get new lines while empty line is not found and append to last line. sub get_lines { my $spc = $_[0]; my $tmp; # local($tmp); while (<>) { last if /^\s*$/; # print STDERR "$_"; chomp; $_ =~ s/^\s*/$spc/og; $tmp .= $_; } return $tmp; } # get_lines # # Getting scores from scoring vector extracted from HSP record. sub get_scores { my $t = $_[0]; my ( $sc, $bt, $ex, $pv, $id ); my ( $qfr, $sfr ) = ( '.', '.' ); ( ( $t =~ /Score[^\s]*\s+=\s+\b(\d+)\b\s+\([^,]*,/ ) || ( $t =~ /Score\s+=\s+[^,]*\s+\((\d+)\)[^,]*,/o ) ) && ( $sc = $1 ); ( $t =~ /Score[^\s]*\s+=.*[\s\(]([+-]?(\d+\.?\d*|\.\d+))\b \bbits[^,]*,/o ) && ( $bt = $1 ); ( $t =~ /Expect[^\s]*\s+=\s+([+-]?([Ee][+-]?\d+|(\d+\.?\d*|\.\d+)([Ee][+-]?\d+)?))\s*,/o ) && ( $ex = $1 ); ( $ex =~ /^[Ee]/o ) && ( $ex = "1" . $ex ); ( $ex =~ /^(.*\.)$/o ) && ( $ex = $1 . "0" ); ( $t =~ /Sum[^\s]*\s+\bP[^\s]*\s+=\s+([+-]?([Ee][+-]?\d+|(\d+\.?\d*|\.\d+)([Ee][+-]?\d+)?))\s*,/o ) ? ( $pv = $1 ) : ( $pv = "." ); # $pv not defined then $pv="." ( $pv =~ /^(.*\.)$/o ) && ( $pv = $1 . "0" ); ( $t =~ /Identities[^\s]*\s+=\s+(\d+)\/(\d+)\s+/o ) && ( $id = $1 ); $noframe_flg || do { # BLASTX (translated nucleotides vs protein) ( $scQ && !$scS ) && do { ( $t =~ /Frame[^\s]*\s+=\s+(\+|\-)(\d)\b/o ) && ( $qfr = $2 ); }; # TBLASTN (protein vs translated nucleotides) ( !$scQ && $scS ) && do { ( $t =~ /Frame[^\s]*\s+=\s+(\+|\-)(\d)\b/o ) && ( $sfr = $2 ); }; # TBLASTX (translated nucleotides vs translated nucleotides) ( $scQ && $scS ) && do { ( $t =~ /Frame[^\s]*\s+=\s+(\+|\-)(\d)\s*\/\s*(\+|\-)(\d)\b/o ) && ( $qfr = $2, $sfr = $4 ); }; }; # $noframe_flg return ( $sc, $bt, $ex, $pv, $id, $qfr, $sfr ); } # get_scores # # Calculating strand from coords sub chk_strand { my ( $first, $last ) = @_; my $st = "+"; ( $first >= $last ) && ( ( $first, $last ) = ( $last, $first ), $st = "-" ); return ( $first, $last, $st ); } # chk_strand # # Formatting output as plain, HSPs, GFF, APLOT, ALN. sub prt_hsp { print STDOUT <<"EndOfHSPs"; $prg $dbase{$nm} : $id $lnmin $gsc $sc $bt $ex $pv : $query{$nm} $hsq $heq $stq $frq : $wnm $hss $hes $sts $frs : $desc{$nm} EndOfHSPs } # prt_hsp # sub prt_ext { print STDOUT <<"EndOfPlain"; MATCH($n): $query{$nm} x $wnm SCORE($n): $sc\nBITSC($n): $bt\nEXPEC($n): $ex Psum($pv) IDENT($n): $id/$lnmin : $gsc \% T_GAP($n): $gpt\nFRAME($n): $frq/$frs\nSTRND($n): $stq/$sts\nMXLEN($n): $lnmx QUERY($n): length $lnq : gaps $gpq : $hsq $heq : $stq : $frq : $hsp_seq{$tq} SBJCT($n): length $lns : gaps $gps : $hss $hes : $sts : $frs : $hsp_seq{$ts} \#\# EndOfPlain } # prt_ext # sub prt_Q_gff { # $hss $hes;\tStrand $sts;\tFrame $frs;\t printf STDOUT $GFFfmt, $query{$nm}, $prg, 'hsp', $hsq, $heq, $gsc, $stq, $frq, "$wnm" . ( sprintf( $GFFtg, $hss, $hes, $sts, $frs ) ) . "$scores$sq"; } sub prt_S_gff { # $hsq $heq;\tStrand $stq;\tFrame $frq;\t printf STDOUT $GFFfmt, $wnm, $prg, 'hsp', $hss, $hes, $gsc, $sts, $frs, "$query{$nm}" . ( sprintf( $GFFtg, $hsq, $heq, $stq, $frq ) ) . "$scores$sq"; } sub prt_Q_fullgff { # $hss $hes;\tStrand $sts;\tFrame $frs;\t printf STDOUT $GFFfmt, $query{$nm}, $prg, 'hsp', $hsq, $heq, $gsc, $stq, $frq, "Target \"$wnm\"" . ( sprintf( $GFFtg, $hss, $hes, $sts, $frs ) ) . "$scores$sq"; } sub prt_S_fullgff { # $hsq $heq;\tStrand $stq;\tFrame $frq;\t printf STDOUT $GFFfmt, $wnm, $prg, 'hsp', $hss, $hes, $gsc, $sts, $frs, "Target \"$query{$nm}\"" . ( sprintf( $GFFtg, $hsq, $heq, $stq, $frq ) ) . "$scores$sq"; } sub prt_Q_aplot { printf STDOUT $GFFfmt, "$query{$nm}:$wnm", $prg, 'hsp', "$hsq:$hss", "$heq:$hes", $gsc, "$stq:$sts", "$frq:$frs", "$bt:$n $scores$sq"; } sub prt_S_aplot { printf STDOUT $GFFfmt, "$wnm:$query{$nm}", $prg, 'hsp', "$hss:$hsq", "$hes:$heq", $gsc, "$sts:$stq", "$frs:$frq", "$bt:$n $scores$sq"; } sub prt_pairwise { $prt_pos_flg && do { $ml = &max( length($hsq), length($heq), length($hss), length($hes) ); ( $x, $y ) = ( " " . &fill_left( $hsq, $ml, " " ) . " " . &fill_left( $heq, $ml, " " ) . " $stq $frq ", " " . &fill_left( $hss, $ml, " " ) . " " . &fill_left( $hes, $ml, " " ) . " $sts $frs " ); }; print "#\n" if $aln_split; $aln_split = 1; print STDOUT <<"EndOfALIGN"; $a$x$hsp_seq{$tq} $b$y$hsp_seq{$ts} EndOfALIGN } # prt_pairwise # sub prt_cmn_aln { print STDOUT <<"EndOfALN" if !$nocmmnt_flg; ################################################################################ ## ## $query{$nm} x $wnm #$n ## ## $prg $dbase{$nm} ## Identity: $gsc Score: $sc Bits: $bt E_value: $ex P_value: $pv ## DESCR: $desc{$nm} ## EndOfALN } # prt_cmn_aln sub prt_msf { my ( $i, $jq, $js, $vs, $ve, $chw ); ( $aq, $as, $sql ) = ( $hsp_seq{$tq}, $hsp_seq{$ts}, length( $hsp_seq{$tq} ) ); $aq =~ s/\.//og; $as =~ s/\.//og; ( $lq, $ls ) = ( length($aq), length($as) ); &prt_cmn_aln; print STDOUT <<"EndOfMSF"; \n $query{$nm}\_x_$wnm\_\#$n.msf MSF: $sql Type: P May 4th, 2000 Check: 0 ..\n Name: $a Len: $lq Check: 0 Weight: 1.00 Name: $b Len: $ls Check: 0 Weight: 1.00 \n// EndOfMSF for ( $i = 0 ; $i <= ( $sql - 1 ) ; $i += $chars_per_line ) { ( $jq, $js ) = ( substr( $hsp_seq{$tq}, $i, 50 ), substr( $hsp_seq{$ts}, $i, 50 ) ); print STDOUT "\n"; $prt_pos_flg && do { $chw = length($jq); ( $vs, $ve ) = ( $i + 1, $i + $chw ); $chw = $chw - length( $vs . $ve ); print STDOUT " " x ( $ml + 1 ) . $vs . " " x ( $chw > 1 ? $chw : 1 ) . $ve . "\n"; }; print STDOUT <<"EndOfALIGN"; $a $jq $b $js EndOfALIGN } print STDOUT "\n\n"; } # prt_msf sub prt_aln { my ( $i, $jq, $js, $vs, $ve, $chw ); ( $aq, $as, $sql ) = ( $hsp_seq{$tq}, $hsp_seq{$ts}, length( $hsp_seq{$tq} ) ); $aq =~ s/\./-/og; $as =~ s/\./-/og; &prt_cmn_aln; for ( $i = 0 ; $i <= ( $sql - 1 ) ; $i += $chars_per_line ) { ( $jq, $js ) = ( substr( $aq, $i, 50 ), substr( $as, $i, 50 ) ); print STDOUT "\n"; $prt_pos_flg && do { $chw = length($jq); ( $vs, $ve ) = ( $i + 1, $i + $chw ); $chw = $chw - length( $vs . $ve ); print STDOUT " " x ( $ml + 1 ) . $vs . " " x ( $chw > 1 ? $chw : 1 ) . $ve . "\n"; }; print STDOUT <<"EndOfALIGN"; $a $jq $b $js EndOfALIGN } print STDOUT "\n\n"; } # prt_aln # sub setprtfunct() { CHOOSE: { if ($hsp_flg) { $prt_funct = sub { &prt_hsp() }; } elsif ( !$nogff_flg ) { if ($subject_flg) { $gff_flg && ( $prt_funct = sub { &prt_S_gff() }, last CHOOSE ); $fullgff_flg && ( $prt_funct = sub { &prt_S_fullgff() }, last CHOOSE ); $aplot_flg && ( $prt_funct = sub { &prt_S_aplot() }, last CHOOSE ); } else { $gff_flg && ( $prt_funct = sub { &prt_Q_gff() }, last CHOOSE ); $fullgff_flg && ( $prt_funct = sub { &prt_Q_fullgff() }, last CHOOSE ); $aplot_flg && ( $prt_funct = sub { &prt_Q_aplot() }, last CHOOSE ); } } elsif ($expanded_flg) { $prt_funct = sub { &prt_ext() }; } else { $pairwise_flg && ( $prt_funct = sub { &prt_pairwise() }, last CHOOSE ); $msf_flg && ( $prt_funct = sub { &prt_msf() }, last CHOOSE ); $aln_flg && ( $prt_funct = sub { &prt_aln() }, last CHOOSE ); } }; # CHOOSE } # setprtfunct # sub prt_out() { my $ht = 0; $CT++; $prt = 0; $err_flg && print STDERR &header("WRITING OUTPUT TO STDOUT"); &setprtfunct(); while (@seqlist) { $nm = shift (@seqlist); ( $wnm = $nm ) =~ s/\_\d+$//o; ( !$hsp_flg && $comment_flg ) && ( print STDOUT "#\n# $prgseq{$nm} :: DB $dbase{$nm} :: $cnt{$nm} HSPs for $query{$nm}x$wnm \n# DESCR: $desc{$nm}\n#\n" ); ( $cnt{$nm} > 0 ) && do { for ( $n = 1 ; $n <= $cnt{$nm} ; $n++ ) { &prt_progress( ++$ht ); $tq = $nm . "query" . $n; $ts = $nm . "sbjct" . $n; ( $sc, $bt, $ex, $pv, $id, $frq, $frs ) = &get_scores( $sco{ $nm . $n } ); ( $hsq, $heq, $stq ) = &chk_strand( $hsp_start{$tq}, $hsp_end{$tq} ); ( $hss, $hes, $sts ) = &chk_strand( $hsp_start{$ts}, $hsp_end{$ts} ); $lnq = $heq - $hsq + 1; $scQ && ( $lnq = $lnq / 3 ); $lns = $hes - $hss + 1; $scS && ( $lns = $lns / 3 ); $lnmin = ( $lnq > $lns ) ? $lns : $lnq; $lnmax = ( $lnq < $lns ) ? $lns : $lnq; $lnmx = length( $hsp_seq{$tq} ); { my $hh = $hsp_seq{$tq}; $gpq = ( $hh =~ s/-/ /og ) || 0; $hh = $hsp_seq{$ts}; $gps = ( $hh =~ s/-/ /og ) || 0; }; $gpt = $gpq + $gps; { ( $ids_flg || $expanded_flg || $hsp_flg ) && # score is Identities divided by minlength ( ($gsc) = eval( ( $id / $lnmin ) * 100 ) =~ /^(\d+(\.\d{0,3})?)/o, last ); $bit_flg && ( $gsc = $bt, last ); $gsc = $sc; }; ($prg) = $prgseq{$nm} =~ /^([^\s]+)\s/o; # GFF format PRINT: { $hsp_flg && do { $prt_funct->(); last PRINT; }; # default output # do { $sq = $scores = ""; $full_scores && do { $scores = "E_value $ex;${fs}P_sum $pv;${fs}Aln_Score" . " $sc;${fs}Bit_Score $bt;${fs}Idn_Score " . sprintf( "%6.2f", ( $id / $lnmin ) * 100 ) . " ($id/$lnmin);${fs}Gaps " . sprintf( "%4.2f", ( $gpt / $lnmx ) * 100 ) . " (Q:$gpq|S:$gps);" . "${fs}Lengths Q:$lnq|S:$lns|T:$lnmx"; $aplot_flg && ( $scores = "# $scores" ); }; # $full_scores $subject_flg && do { $sq = ";${fs}Subject_seq $hsp_seq{$ts} ;${fs}" . "Query_seq $hsp_seq{$tq}" if $sequence_flg; $prt_funct->(); last PRINT; }; # $subject_flg $sq = ";${fs}Query_seq $hsp_seq{$tq} ;${fs}" . "Subject_seq $hsp_seq{$ts}" if $sequence_flg; $prt_funct->(); last PRINT; } unless $nogff_flg; # $expanded_flg && do { $prt_funct->(); last PRINT; }; # # ($qm, $sm, $x, $y) = ("$query{$nm}\_\#$n", "$nm\_\#$n", " ", " "); ( $qm, $sm, $x, $y ) = ( "$query{$nm}", "$wnm", " ", " " ); $ml = &max( length($qm), length($sm) ); ( $a, $b ) = ( &fill_right( $qm, $ml, " " ), &fill_right( $sm, $ml, " " ) ); $prt_funct->(); }; # PRINT }; # for $cnt{$nm} }; # do if $cnt{$nm}>0 }; # foreach &prt_foeprg($ht); $HT += $ht; @seqlist = (); print STDERR &header( "FROM $. INPUT LINES", "$PT INPUT RECORDS READ", "TOTAL HSPs WRITTEN: $HT" ) if $err_flg; } ################################################### ## Main Loop function ################################################### # sub check_blastprogname() { my ( $str, $pt ) = @_; # print STDERR "$_\n"; ( $prt == 0 && $fragment == 1 ) && do { $prt = 1; $err_flg && print STDERR "##\n## NO PARAMETERS SECTION FOUND...\n##\n"; }; $prt && do { &prt_foeprg($$pt); $PT += $$pt; $$pt = 0; &prt_out; $err_flg && do { print STDERR "##\n"; print STDERR &header("PARSING STDIN (More Results From BLAST)"); }; }; # $prt # ( $program, $version ) = split /\s+/og, $str, 2; # typeQ/typeS: 0 for proteins - 1 for nucleic acids. # Amino Acids vs Amino Acids ( $program =~ /^BLASTP$/o ) && ( $scQ = 0, $scS = 0 ); # Nucleotides vs Nucleotides ( $program =~ /^BLASTN$/o ) && ( $scQ = 0, $scS = 0 ); # Nucleotides vs Amino Acids ( $program =~ /^BLASTX$/o ) && ( $scQ = 1, $scS = 0 ); # Amino Acids vs Nucleotides ( $program =~ /^TBLASTN$/o ) && ( $scQ = 0, $scS = 1 ); # Nucleotides translated vs Nucleotides translated ( $program =~ /^TBLASTX$/o ) && ( $scQ = 1, $scS = 1 ); # $prog_params = "#\n# $program $version\n#"; $query_name = $db_name = ''; $main = 1; $seqflg = $hsp = $fragment = $param = 0; } # check_blastprogname # sub check_seqids() { my $str = shift; # print STDERR "$_\n"; defined($program) || do { # assuming to parse blastn??? $program = "BLASTN"; ( $scQ, $scS ) = ( 0, 0 ); $prog_params = "#\n# $program $version\n#"; $query_name = $db_name = ''; }; ( $seqname, $descr ) = split /\s+/og, $str, 2; $seqname =~ s/^\s*>//o; $seqname =~ s/\s|:|\|/_/og; $seqname .= "_" . ( $index++ ); $prgseq{$seqname} = "$program ($version)"; $query{$seqname} = $query_name; ( $db_name =~ /([^\/]+)$/o ) && ( $dbase{$seqname} = $1 ); push ( @seqlist, $seqname ); $desc{$seqname} = defined($descr) ? join ( ' ', $descr, &get_lines(' ') ) : ''; # $cnt{$seqname} = 0; $seqflg = 1; $main = $hsp = $fragment = $param = 0; } # check_seqids # sub parseblast() { my $pt = 0; ( $CT, $PT, $HT ) = ( 0, 0, 0 ); $err_flg && print STDERR &header("PARSING STDIN FROM BLAST"); $program = undef; # default program name while (<>) { next if /^\s*$/o; &prt_progress( ++$pt ); my $tmpinput = $_; chomp; # s/\r\n$/\n/; # if your input records finish with "\r\n" (like EMBL). # print STDOUT "$. : $_ \n"; # "$." is record number && "$_" is whole record CHECK: { # Starts with "T?BLAST[PNX]?" ? $_ =~ /^\s*T?BLAST[PNX]?/o && do { &check_blastprogname( $_, \$pt ); last CHECK; }; # /^\s*T?BLAST[PNX]?/ # Starts with ">" ?: sequences. $_ =~ /^>/o && do { &check_seqids($_); last CHECK; }; # /^\s*>/ # Starts with "Score" ?: HSPs. ( $_ =~ /^\s*Score/o && $seqflg ) && do { # print STDERR "$_\n"; ( $score = $_ ) =~ s/^\s*//o; $cnt{$seqname}++; $sco{ $seqname . $cnt{$seqname} } = join ( '', $score, &get_lines(', ') ); # print STDOUT $sco{$seqname.$cnt{$seqname}}."\n"; $hsp = 1; $fragment = 0; last CHECK; }; # (/^\s*Score/ && ($seqflg)) # Starts with "Query" ?: Fragments. ( $_ =~ /^Query:/o && $hsp ) && do { # print STDERR "$_\n"; $fragment = 1; last CHECK; }; # (/^\s*Query/ && ($hsp)) # Parameters Section. ( $seqflg && $_ =~ /^\s*(Database|Parameters):/o ) && do { # print STDERR "$_\n"; $prt = $param = 1; $seqflg = $hsp = $fragment = 0; last CHECK; }; # (/^\s*(?:Database|Parameters)/ && ($hsp)) }; # CHECK Block # print STDOUT "$. : MAIN=$main SEQFLG=$seqflg ". # "HSP=$hsp FRAGMENT=$fragment => SEQNAME=$seqname\n"; LOAD: { $fragment && do { # We are within a fragment. my $kk; $txt = ''; $tt = $cnt{$seqname}; ( $txt, $kk ) = split /:\s+/o, $_; if ( $txt =~ /^Query/o ) { # print STDERR "$_\n"; $kk =~ /^(\d+)\s*([^\d]+?)\s*(\d+)\s*$/o && do { ( $ori, $seq, $end ) = ( $1, $2, $3 ); ( $hsp_start{ $seqname . "query" . $tt } ) || ( $hsp_start{ $seqname . "query" . $tt } = $ori ); $hsp_end{ $seqname . "query" . $tt } = $end; $hsp_seq{ $seqname . "query" . $tt } .= $seq; }; } # if ($txt =~ /Query/) elsif ( $txt =~ /^Su?bje?ct/o ) { # print STDERR "$_\n"; $kk =~ /^(\d+)\s*([^\d\s]+)\s*(\d+)\s*$/o && do { ( $ori, $seq, $end ) = ( $1, $2, $3 ); ( $hsp_start{ $seqname . "sbjct" . $tt } ) || ( $hsp_start{ $seqname . "sbjct" . $tt } = $ori ); $hsp_end{ $seqname . "sbjct" . $tt } = $end; $hsp_seq{ $seqname . "sbjct" . $tt } .= $seq; $fragment = 0; }; } # elsif ($txt =~ /Sbjct/) else { last LOAD; } }; # ($fragment) $main && do { # We are within the blast file header. /^\s*Query=\s+(.*?)(\s+([^\s]*)?)?$/o && do { # print STDERR "$_\n"; ( $query_name = $1 ) =~ s/[\s:\|]/_/g; }; /^\s*Database:\s+(.*?)(\s+([^\s]*)?)?$/o && do { # print STDERR "$_\n"; $db_name = $1; while (<>) { last if /^(?:.*\bletter.*|\s*)$/o; # print STDERR "$_\n"; chomp; $_ =~ s/^\s*//o; $_ =~ s/\s*$//o; $db_name .= $_; }; # while getline }; # /^\s*Database: +(.*)\s*$/ last LOAD; }; # ($main) $param && do { # We are within the blast file trailer. /^\s*Query=\s+(.*?)(\s+([^\s]*)?)?$/o && do { # print STDERR "$_\n"; @seqlist = (); ( $query_name = $1 ) =~ s/[\s:\|]/_/g; $main = 1; $seqflg = $hsp = $fragment = $param = 0; last LOAD; }; if (/^\s*[^\[\<\-]/o) { # print STDERR "$_\n"; chomp; $_ =~ s/^/\n\# /o; $prog_params = join ( '', $prog_params, $_ ); } else { $param = 0; } last LOAD; }; # ($param) }; # LOAD Block }; # while $prt && do { &prt_foeprg($pt); $PT += $pt; $pt = 0; &prt_out; }; # $prt # $prt || &prt_foeprg($pt); } # parseblast gff2aplot-2.0.orig/src/sim2gff.pl0000644000000000000000000002374507667662606016655 0ustar rootroot00000000000000# # ################################################################## # # sim2gff.pl # # ################################################################## # # sim2gff.pl [options] < inputfile > outputfile # # Converts SIM output files to GFF formatted files. # # Copyright (C) 1999-2003 -- Thomas WIEHE # Steffi GEBAUER-JUNG # Josep Francesc ABRIL FERRANDO # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; if not, write to the Free Software # Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA. # # ################################################################## # # $Id: sim2gff.nw,v 1.3 2003/02/28 17:24:52 jabril Exp $ # use strict; # my $PROGRAM = 'sim2gff.pl'; my $VERSION = '1.0'; my $DATE = localtime; my $USER = defined( $ENV{USER} ) ? $ENV{USER} : 'Child Process'; my $host = `hostname`; chomp($host); # # # MODULES # use Carp; use Getopt::Std; use File::Basename; # # VARIABLES # # use vars qw($opt_r $opt_x $opt_y $opt_H $opt_f $opt_h); # my $columns = 50; # my ( $simfile, $outfile, $command, $alicount ); my @scorearray; my $i; my @tmp = 0; my %sim; #***** my $_array; my @list; my ( $line, $score, $species1, $species2, $method, $strand, $feature, $avlen, $nmp, $begin1, $begin2, $end1, $end2, $x1frame, $x2frame, $y1frame, $y2frame ); my $flag = ""; my $linemark; my $lav; # # # MAIN LOOP # # # Man page # my $MAN = < gff_file OPTIONS -h print this help text -f output is written to a file named .gff -r interchange the order of sequences (Seq1 on y-axis, Seq2 on x-axis) -x specify the species name for species1 (default: "Seq1") -y specify the species name for species2 (default: "Seq2") -H use the fasta file headers for species labels EXIT STATUS The following perl-like exit status are returned: 0 Error 1 Successful completion AUTHOR(S) Thomas Wiehe (twiehe\@imb-jena.de) CHANGES 30.04.1999 Steffi Gebauer-Jung (steffi\@imb-jena.de) - output strand according new gff format as "+" or "-" instead of 0 or 1 ACKNOWLEDGMENTS MAN # getopts('frx:y:Hh') && !defined($opt_h) && $#ARGV == 0 || croak($MAN); $simfile = shift; # sub max() { my $a = shift; my $b = shift; if ( $a > $b ) { return $a; } else { return $b; } } # ##count the number of alignments: # $command = sprintf( "more %s | grep \"a\ {\" | wc -l |", $simfile ); open( PRG, "$command" ) || croak( sprintf( "Cannot count alignments (ERRMSG = %s)\n", $! ) ); while () { if (/\b[0-9]+/) { $alicount = (split)[0]; } } close(PRG); # ##sort the encountered score values and store in array scorearray: # $command = sprintf( "more %s | grep \"\ \ s\ \" | ", $simfile ); open( PRG, "$command" ) || croak( sprintf( "Cannot sort alignment scores (ERRMSG = %s)\n", $! ) ); $i = 0; while () { if (/\bs\ [0-9]+/) { chomp; $i++; $tmp[$i] = (split)[1]; } } close(PRG); @scorearray = sort { $a <=> $b } @tmp; # -e $simfile or croak( sprintf( "Cannot find %s file (ERRMSG = %s)", $simfile, $! ) ); open( SIMFILE, "< $simfile" ) or croak( sprintf( "Cannot open %s file for reading (ERRMSG = %s)", $simfile, $! ) ); if ( defined($opt_f) ) { #@tmp = split(".sim",$simfile); #$outfile = sprintf("%s%s",(split(/\//,$tmp[0]))[-1],".gff"); $outfile = sprintf( "%s%s", ( split ( /\//, $simfile ) )[-1], ".gff" ); open( STDOUT, "> $outfile" ) or croak( sprintf( "Cannot open %s file for writing (ERRMSG = %s)", $outfile, $! ) ); } $lav = 0; $line = 0; $linemark = 0; printf STDOUT ( "## Alignments from sim file %s\n", $simfile ); while () { chomp; $line++; if (/^\#\:lav/) { $lav++; } if (/^d\ \{/) { $linemark = $line; $flag = "d"; } if ( $line == $linemark + 1 && $flag =~ "d" ) { @list = split ( /\"/, $_ ); @list = split ( /\ /, $list[1] ); @list = split ( /\//, $list[0] ); $method = $list[-1]; #printf("method: %s\n",$method); } $species1 = "Seq1"; $species2 = "Seq2"; if ( defined($opt_x) ) { $species1 = $opt_x; } if ( defined($opt_y) ) { $species2 = $opt_y; } if ( defined($opt_H) ) { if (/^h\ \{/) { $linemark = $line; $flag = "h"; } if ( $line == $linemark + 1 && $flag =~ "h" ) { @list = split ( />|\ |\.+/, $_ ); $species1 = $list[1]; #printf("species1: %s\n",$species1); } if ( $line == $linemark + 2 && $flag =~ "h" ) { @list = split ( />|\ |\.+/, $_ ); $species2 = $list[1]; } } if (/^s\ \{/) { $linemark = $line; $flag = "s"; } if ( $line == $linemark + 1 && ( $flag =~ "s" ) ) { @list = split; $x1frame = $list[1]; $x2frame = $list[2]; #printf("x1: %d\n",$x1frame); } if ( $line == $linemark + 2 && ( $flag =~ "s" ) ) { @list = split; $y1frame = $list[1]; $y2frame = $list[2]; $feature = "seqbounds"; if ( !defined($opt_r) ) { printf STDOUT ( "%s:%s\t%s\t%9s\t%9d:%-9d\t%9d:%-9d\t%.3f\t%s\t%d\t%s\t%s\n", uc($species1), uc($species2), uc($method), $feature, $x1frame, $y1frame, $x2frame, $y2frame, "0.0", "+", "0", "0", "##" ); } else { printf STDOUT ( "%s:%s\t%s\t%9s\t%9d:%-9d\t%9d:%-9d\t%.3f\t%s\t%d\t%s\t%s\n", uc($species2), uc($species1), uc($method), $feature, $y1frame, $x1frame, $y2frame, $x2frame, "0.0", "+", "0", "0", "##" ); } } if (/^a\ \{/) { $flag = "a"; $nmp = 0.0; } if ( $flag =~ "a" ) { if (/^(\s*)s/) { @list = split; $score = $list[1]; $i = 0; while ( $score != $scorearray[$i] ) { $i++; } $feature = sprintf( "\:%.1f", &max( 1. - ( $alicount - $i ) / 10., 0.4 ) ); $score .= $feature; $feature = "align"; } if (/^(\s*)b/) { @list = split; $begin1 = $list[1]; $begin2 = $list[2]; } if (/^(\s*)e/) { @list = split; $end1 = $list[1]; $end2 = $list[2]; $avlen = ( abs( $end1 - $begin1 + 1 ) + abs( $end2 - $begin2 + 1 ) ) / 2.; } if (/^(\s*)l/) { @list = split; if ( ( $list[1] > $list[3] && $list[2] <= $list[4] ) || ( $list[1] <= $list[3] && $list[2] > $list[4] ) || $lav == 2 ) { $strand = "-"; #"reverse alignment" } else { $strand = "+"; #"regular alignment" } $nmp += abs( $list[3] - $list[1] + 1. ) * $list[5] / ( $avlen * 100. ); if ( $lav == 1 ) { if ( !defined($opt_r) ) { printf STDOUT ( "%s:%s\t%s\t%9s\t%9d:%-9d\t%9d:%-9d\t%.3f\t%s\t%d\t%s\t%s%.3f\n", uc($species1), uc($species2), uc($method), $feature, $list[1], $list[2], $list[3], $list[4], $list[5] / 100., $strand, "0", $score, "## cumulative nmp: ", $nmp ) ; #slot "frame" is not used } else { printf STDOUT ( "%s:%s\t%s\t%9s\t%9d:%-9d\t%9d:%-9d\t%.3f\t%s\t%d\t%s\t%s%.3f\n", uc($species2), uc($species1), uc($method), $feature, $list[2], $list[1], $list[4], $list[3], $list[5] / 100., $strand, "0", $score, "##cumulative nmp: ", $nmp ) ; #slot "frame" is not used } } if ( $lav == 2 ) { if ( !defined($opt_r) ) { printf STDOUT ( "%s:%s\t%s\t%9s\t%9d:%-9d\t%9d:%-9d\t%.3f\t%s\t%d\t%s\t%s%.3f\n", uc($species1), uc($species2), uc($method), $feature, $list[1], $y1frame + $y2frame - $list[2], $list[3], $y1frame + $y2frame - $list[4], $list[5] / 100., $strand, "0", $score, "## cumulative nmp: ", $nmp ) ; #slot "frame" is not used } else { printf STDOUT ( "%s:%s\t%s\t%9s\t%9d:%-9d\t%9d:%-9d\t%.3f\t%s\t%d\t%s\t%s%.3f\n", uc($species2), uc($species1), uc($method), $feature, $y1frame + $y2frame - $list[2], $list[1], $y1frame + $y2frame - $list[4], $list[3], $list[5] / 100., $strand, "0", $score, "##cumulative nmp: ", $nmp ) ; #slot "frame" is not used } } } if (/^\}/) { $flag = ""; } } } close(STDOUT) or croak( sprintf( "Cannot close %s file (ERRMSG = %s)", $outfile, $! ) ); exit(0); # # FUNCTIONS # gff2aplot-2.0.orig/src/ali2gff/0000777000000000000000000000000007667662606016266 5ustar rootroot00000000000000gff2aplot-2.0.orig/src/ali2gff/ali2gff.c0000775000000000000000000013154007667662606017751 0ustar rootroot00000000000000/**************************************************************************** * * Copyright (C) 2001 Steffi Gebauer-Jung * Max-Planck-Institute of Chemical Ecology * Jena, Germany * All rights reserved. * * Language: ANSI C * * Description: Module to translate MUMmer output files or sim output files into an gff formatted output. * * MUMmer files * ============ * prefix.gaps resp. * prefix.errorsgaps resp. * prefix.align * * ATTENTION: * - gff output contains always strand "+:+", * even if MUMmer output file contains header "> .. reverse Consistent matches" * because these files do not contain the length of the given (reverse complemented) sequence, * so it is not possible to retrieve the positions on forward strand * BE SURE TO USE OUTPUT FILES resulting from such files only together with the reverse complemented original sequence! * - there will be no seqbounds line as the same cause as above * * * sim input files * =============== * first #:lav: forward strand * second #:lav: reverse complemented strand * third: error * normal a-block: * a { * s 258 * b 1297 1302 * e 1329 1333 * l 1297 1302 1303 1308 100 * l 1305 1309 1329 1333 100 * } * a-block with identical alignment of full sequence (to skip with given option -i): * a { * s 27000 score = length * sim-parameter M (look for it within d-block) * b 1 1 * e 2700 2700 * l 1 1 2700 2700 100 * } * or: * a { * s 0 * b 1 1 * e 2700 2700 * f 0 f-line * l 1 1 2700 2700 l-line without score-value * } * gff files * ========= * identical alignment of full sequence (to skip with given option -i): * - is followed by a fragment of length of at least (length - 4) * (on head and tail at most 2 bases which do not belong to a complete triplett - tblastx looks on each frame separately) * * $Id: ali2gff.c,v 1.3 2001/09/26 16:01:50 steffi Exp $ * ****************************************************************************/ #include "ali2gff.h" #include "time.h" #define DEBUG 0 static char prgCall[MAXSTRING]; /*----- program call -----*/ static char infile[MAXSTRING]; /*----- name of the input file -----*/ static char outfile[MAXSTRING]; /*----- name of the output file -----*/ static int opt_x, opt_y, opt_f; /*----- argument line options on/off -----*/ static int opt_r = 0; static int opt_t = 0; static int opt_i = 0; static char frameChar = '.'; /*----- frame to put in output -----*/ static char xName[MAXSTRING] = "SEQ1"; /*----- species name for species 1 -----*/ static char yName[MAXSTRING] = "SEQ2"; /*----- species name for species 2 -----*/ static FILE *stdoutCopy; static long int counta = 0; static float nmp; static float avlen; /*----------------------------- Implementation ----------------------------*/ int main(int argc, char *argv[]) { char *ptr; start_time(); /*----- standard command line parsing ---------------------------------*/ strcpy(prgCall,argv[0]); if (argc < 2) printUsage(); while (argv[1][0] == '-') { switch (argv[1][1]) { case 't': opt_t = 1; if (strcmp(argv[1],"-t")) printUsage(); argc--; argv++; if ((sscanf(argv[1],"%c",&frameChar) < 1) || ((frameChar != '0') && (frameChar != '1') && (frameChar != '2') && (frameChar != '.'))) printUsage(); break; case 'x': opt_x = 1; if (strcmp(argv[1],"-x")) printUsage(); argc--; argv++; if (sscanf(argv[1],"%s",xName) < 1) printUsage(); ptr = xName; break; case 'y': opt_y = 1; if (strcmp(argv[1],"-y")) printUsage(); argc--; argv++; if (sscanf(argv[1],"%s",yName) < 1) printUsage(); ptr = yName; break; case 'r': opt_r = 1; break; case 'i': opt_i = 1; break; case 'f': opt_f = 1; break; case 'h': printUsage(); break; default: printUsage(); break; } argc--; /* count of left arguments */ argv++; /* move the pointer to the right */ } if (argc > 2) printUsage(); strcpy(infile,argv[1]); /*----- choose output channel ----*/ if (opt_f) { /* fileptr = strrchr(infile,'/'); if (fileptr == NULL) */ strcpy(outfile,infile); /* else strcpy(outfile,++fileptr); */ strcat(outfile,".gff"); if (!(stdoutCopy = fopen(outfile, "w"))) {fprintf(stderr,"Error: Unable to write file %s\n",outfile); exit(4);} } else stdoutCopy = stdout; doit(); if (DEBUG) print_time(); return 0; } /**************************************************************************** * * Function: doit * * Parameters: --- * * Returns: --- * * Description: decide between MUMmer output file, sim output file and gff file * ****************************************************************************/ void doit() { FILE *alifile; char line[MAXSTRING]; /*----- read line -----*/ char *ptr; /*----- pointer to line -----*/ /*----- open alignment file -----*/ if ((alifile = fopen(infile, "r")) == NULL) {fprintf(stderr,"Error: Unable to input file %s\n",infile);exit(2);} /*----- read first line to decide whether it is a SIM -----*/ if ((ptr = fgets(line,sizeof(line),alifile)) == NULL) wrongFormatError(infile); /* input file sim formatted */ if (strstr(line,"#:lav") == ptr) { processSimfile(); } /* input file in MUMmer output format */ else if (strstr(line,"Consistent matches")) { processMumfile(); } /* input file already gff formatted */ else { if (!strcmp(xName,"SEQ1")) { while (((ptr = fgets(line,sizeof(line),alifile)) != NULL) && *ptr == '#'); if (sscanf(line,"%[^: \t\n\r]:%[^: \t\n\r]", xName,yName) < 2) wrongFormatError(infile); } if (fclose(alifile)) fprintf(stderr,"Error: Unable to close file %s\n%s\n",infile,line); processGFFfile(); } return; } /**************************************************************************** * * Function: processGFFfile * * Parameters: --- * * Returns: --- * * Description: read alignment data from gff file * ****************************************************************************/ void processGFFfile() { FILE *GFFfile; char line[MAXSTRING]; /*----- read line -----*/ char *ptr; /*----- pointer to line -----*/ char *cptr; // pointer to comment char waste[MAXSTRING]; char waste2[MAXSTRING]; char feature[MAXSTRING]; char source[MAXSTRING] = "GFF"; unsigned long int xb, xe, yb, ye; unsigned long int xseqLen_4 = LONG_MAX; unsigned long int yseqLen_4 = LONG_MAX; float score; char scores[MAXSTRING]; char strand1; char strand2; char strands[4]; char frameChar1; char frameChar2; char frames[4]; time_t now; char nowString[100]; unsigned short int aliPrinted = 1; char aliPrintString[MAXSTRING]; /*----- open alignment file -----*/ GFFfile = fopen(infile, "r"); if (GFFfile == NULL) {fprintf(stderr,"Error: Unable to input file %s\n%s\n",infile,line);exit(2);} fprintf (stdoutCopy,"##gff-version 2\n"); fprintf (stdoutCopy,"##source-version %s\n",prgCall); now = time(NULL); strftime(nowString,100,"%b/%d/%Y %X",localtime(&now)); fprintf (stdoutCopy,"##date %s\n##\n##%s ",nowString,prgCall); if (opt_r) fprintf (stdoutCopy," -r"); if (opt_t) fprintf (stdoutCopy," -t %c",frameChar); fprintf (stdoutCopy," -x %s -y %s",xName,yName); if (opt_i) fprintf (stdoutCopy," -i"); if (opt_f) fprintf (stdoutCopy," -f"); fprintf (stdoutCopy," %s\n#name1:name2\t\tsource\t\tfeature\t\tbeg1:beg2\tend1:end2\tscore\tstrand\tframe\tgroup\tcomment\n",infile); if (opt_r) { while ((ptr = fgets(line,sizeof(line),GFFfile)) != NULL) { if (*ptr == '#') fprintf(stdoutCopy,"%s",line); else { if ((sscanf(line,"%*s %s %s %lu:%lu %lu:%lu %s %s %s",source,feature,&xb,&yb,&xe,&ye,scores,strands,frames)) < 9) wrongFormatError(infile); cptr = strchr(line,'#'); if (!strcmp(feature,"seqbounds")) { if ((sscanf(scores,"%[^:]:%s",waste,waste2)) == 2) sprintf(scores,"%s:%s",waste2,waste); if ((sscanf(strands,"%c:%c",&strand1,&strand2)) == 2) sprintf(strands,"%c:%c",strand2,strand1); if ((sscanf(frames,"%c:%c",&frameChar1,&frameChar2)) == 2) sprintf(frames,"%c:%c",frameChar2,frameChar1); if (cptr) fprintf(stdoutCopy,"%s:%s\t%s\tseqbounds\t%lu:%lu\t%lu:%lu\t%s\t%s\t%s\t%s",yName,xName,source,yb,xb,ye,xe,scores,strands,frames,cptr); else fprintf(stdoutCopy,"%s:%s\t%s\tseqbounds\t%lu:%lu\t%lu:%lu\t%s\t%s\t%s\n",yName,xName,source,yb,xb,ye,xe,scores,strands,frames); xseqLen_4 = xe - xb - 4; yseqLen_4 = ye - yb - 4; } else if (!strcmp(feature,"alignment")) { /* print previous alignment line, if neccessary */ if (!aliPrinted) fprintf (stdoutCopy,"%s",aliPrintString); aliPrinted = 0; if (cptr) { if (sscanf(scores,"%f",&score) == 1) sprintf(aliPrintString,"%s:%s\t%s\talignment\t%lu:%lu\t%lu:%lu\t%5.3f\t%s\t%s\t%s",yName,xName,source,yb,xb,ye,xe,score,strands,frames,cptr); else sprintf(aliPrintString,"%s:%s\t%s\talignment\t%lu:%lu\t%lu:%lu\t%s\t%s\t%s\t%s", yName,xName,source,yb,xb,ye,xe,scores,strands,frames,cptr); } else { if (sscanf(scores,"%f",&score) == 1) sprintf(aliPrintString,"%s:%s\t%s\talignment\t%lu:%lu\t%lu:%lu\t%5.3f\t%s\t%s\n",yName,xName,source,yb,xb,ye,xe,score,strands,frames); else sprintf(aliPrintString,"%s:%s\t%s\talignment\t%lu:%lu\t%lu:%lu\t%s\t%s\t%s\n", yName,xName,source,yb,xb,ye,xe,scores,strands,frames); } } else if (!strcmp(feature,"fragment")) { if (!opt_i || (xe - xb < xseqLen_4) || (ye - yb < yseqLen_4)) { if (cptr) { if (sscanf(scores,"%f",&score) == 1) { if (aliPrinted) fprintf(stdoutCopy,"%s:%s\t%s\tfragment\t%lu:%lu\t%lu:%lu\t%5.3f\t%s\t%s\t%s", yName,xName,source,yb,xb,ye,xe,score,strands,frames,cptr); else fprintf(stdoutCopy,"%s%s:%s\t%s\tfragment\t%lu:%lu\t%lu:%lu\t%5.3f\t%s\t%s\t%s",aliPrintString,yName,xName,source,yb,xb,ye,xe,score,strands,frames,cptr); } else { if (aliPrinted) fprintf(stdoutCopy,"%s:%s\t%s\tfragment\t%lu:%lu\t%lu:%lu\t%s\t%s\t%s\t%s", yName,xName,source,yb,xb,ye,xe,scores,strands,frames,cptr); else fprintf(stdoutCopy,"%s%s:%s\t%s\tfragment\t%lu:%lu\t%lu:%lu\t%s\t%s\t%s\t%s",aliPrintString,yName,xName,source,yb,xb,ye,xe,scores,strands,frames,cptr); } } else { if (sscanf(scores,"%f",&score) == 1) { if (aliPrinted) fprintf(stdoutCopy,"%s:%s\t%s\tfragment\t%lu:%lu\t%lu:%lu\t%5.3f\t%s\t%s\n", yName,xName,source,yb,xb,ye,xe,score,strands,frames); else fprintf(stdoutCopy,"%s%s:%s\t%s\tfragment\t%lu:%lu\t%lu:%lu\t%5.3f\t%s\t%s\n",aliPrintString,yName,xName,source,yb,xb,ye,xe,score,strands,frames); } else { if (aliPrinted) fprintf(stdoutCopy,"%s:%s\t%s\tfragment\t%lu:%lu\t%lu:%lu\t%s\t%s\t%s\n", yName,xName,source,yb,xb,ye,xe,scores,strands,frames); else fprintf(stdoutCopy,"%s%s:%s\t%s\tfragment\t%lu:%lu\t%lu:%lu\t%s\t%s\t%s\n",aliPrintString,yName,xName,source,yb,xb,ye,xe,scores,strands,frames); } } } else fprintf(stderr,"%s: Warning: Skipped fragment (probably a self alignment of full sequence):\n%s",prgCall,line); aliPrinted = 1; /* if not printed already, then previous alignment line must not be printed because of skipped fragment */ } } } } else { while ((ptr = fgets(line,sizeof(line),GFFfile)) != NULL) { if (*ptr == '#') fprintf(stdoutCopy,"%s",line); else { if ((sscanf(line,"%*s %s %s %lu:%lu %lu:%lu %s %s %s",source,feature,&xb,&yb,&xe,&ye,scores,strands,frames)) < 9) wrongFormatError(infile); cptr = strchr(line,'#'); if (!strcmp(feature,"seqbounds")) { if (cptr) fprintf(stdoutCopy,"%s:%s\t%s\tseqbounds\t%lu:%lu\t%lu:%lu\t%s\t%s\t%s\t%s",xName,yName,source,xb,yb,xe,ye,scores,strands,frames,cptr); else fprintf(stdoutCopy,"%s:%s\t%s\tseqbounds\t%lu:%lu\t%lu:%lu\t%s\t%s\t%s\n",xName,yName,source,xb,yb,xe,ye,scores,strands,frames); xseqLen_4 = xe - xb - 4; yseqLen_4 = ye - yb - 4; } else if (!strcmp(feature,"alignment")) { /* print previous alignment line, if neccessary */ if (!aliPrinted) fprintf (stdoutCopy,"%s",aliPrintString); aliPrinted = 0; if (cptr) { if (sscanf(scores,"%f",&score) == 1) sprintf(aliPrintString,"%s:%s\t%s\talignment\t%lu:%lu\t%lu:%lu\t%5.3f\t%s\t%s\t%s",xName,yName,source,xb,yb,xe,ye,score ,strands,frames,cptr); else sprintf(aliPrintString,"%s:%s\t%s\talignment\t%lu:%lu\t%lu:%lu\t%s\t%s\t%s\t%s", xName,yName,source,xb,yb,xe,ye,scores,strands,frames,cptr); } else { if (sscanf(scores,"%f",&score) == 1) sprintf(aliPrintString,"%s:%s\t%s\talignment\t%lu:%lu\t%lu:%lu\t%5.3f\t%s\t%s\n",xName,yName,source,xb,yb,xe,ye,score ,strands,frames); else sprintf(aliPrintString,"%s:%s\t%s\talignment\t%lu:%lu\t%lu:%lu\t%s\t%s\t%s\n", xName,yName,source,xb,yb,xe,ye,scores,strands,frames); } } else if (!strcmp(feature,"fragment")) { if (!opt_i || (xe - xb < xseqLen_4) || (ye - yb < yseqLen_4)) { if (cptr) { if (sscanf(scores,"%f",&score) == 1) { if (aliPrinted) fprintf(stdoutCopy,"%s:%s\t%s\tfragment\t%lu:%lu\t%lu:%lu\t%5.3f\t%s\t%s\t%s", xName,yName,source,xb,yb,xe,ye,score,strands,frames,cptr); else fprintf(stdoutCopy,"%s%s:%s\t%s\tfragment\t%lu:%lu\t%lu:%lu\t%5.3f\t%s\t%s\t%s",aliPrintString,xName,yName,source,xb,yb,xe,ye,score,strands,frames,cptr); } else { if (aliPrinted) fprintf(stdoutCopy,"%s:%s\t%s\tfragment\t%lu:%lu\t%lu:%lu\t%s\t%s\t%s\t%s", xName,yName,source,xb,yb,xe,ye,scores,strands,frames,cptr); else fprintf(stdoutCopy,"%s%s:%s\t%s\tfragment\t%lu:%lu\t%lu:%lu\t%s\t%s\t%s\t%s",aliPrintString,xName,yName,source,xb,yb,xe,ye,scores,strands,frames,cptr); } } else { if (sscanf(scores,"%f",&score) == 1) { if (aliPrinted) fprintf(stdoutCopy,"%s:%s\t%s\tfragment\t%lu:%lu\t%lu:%lu\t%5.3f\t%s\t%s\n", xName,yName,source,xb,yb,xe,ye,score,strands,frames); else fprintf(stdoutCopy,"%s%s:%s\t%s\tfragment\t%lu:%lu\t%lu:%lu\t%5.3f\t%s\t%s\n",aliPrintString,xName,yName,source,xb,yb,xe,ye,score,strands,frames); } else { if (aliPrinted) fprintf(stdoutCopy,"%s:%s\t%s\tfragment\t%lu:%lu\t%lu:%lu\t%s\t%s\t%s\n", xName,yName,source,xb,yb,xe,ye,scores,strands,frames); else fprintf(stdoutCopy,"%s%s:%s\t%s\tfragment\t%lu:%lu\t%lu:%lu\t%s\t%s\t%s\n",aliPrintString,xName,yName,source,xb,yb,xe,ye,scores,strands,frames); } } } else fprintf(stderr,"%s: Warning: Skipped fragment (probably a self alignment of full sequence):\n%s",prgCall,line); aliPrinted = 1; /* if not printed already, then previous alignment line must not be printed because of skipped fragment */ } } } } if (!aliPrinted) fprintf (stdoutCopy,"%s",aliPrintString); /* print alignment if there is no following fragment */ if (fclose(GFFfile)) fprintf(stderr,"Error: Unable to close file %s\n",infile); if (opt_f && fclose(stdoutCopy)) fprintf(stderr,"Error: Unable to close file %s\n",outfile); return; } /**************************************************************************** * * Function: processMumfile * * Parameters: --- * * Returns: --- * * Description: read alignment data from MUMmer output file * ****************************************************************************/ void processMumfile() { FILE *MUMfile; char line[MAXSTRING]; /*----- read line -----*/ char *ptr; /*----- pointer to line -----*/ unsigned long int xb, xe, yb, ye; // start and end positions of MUM unsigned long int nextxb, nextyb; // start and end positions of next MUM unsigned long int mumlen; /* length of MUM */ unsigned long int overlap; unsigned long int errCount; float score; unsigned long int fxb, fxe, fyb, fye; // start and end positions of gaps resp. fragments of gaps unsigned long int flen; // fragment length char frames[4]; time_t now; char nowString[100]; char nextMUM[MAXSTRING] = ""; char nextGAP[MAXSTRING] = ""; char seq1[MAX_SEQUENCE_LENGTH]; char seq2[MAX_SEQUENCE_LENGTH]; char err[MAX_SEQUENCE_LENGTH]; unsigned long int gaplen; char *ptr11; char *ptr12; char *ptr21; char *ptr22; char *ptre1; char *ptre2; unsigned long int i; unsigned short int other = 0; // flag, whethr already "Other matches" are to be read frames[0] = frames[2] = frameChar; frames[1] = ':'; frames[3] = '\0'; /*----- open alignment file -----*/ MUMfile = fopen(infile, "r"); if (MUMfile == NULL) {fprintf(stderr,"Error: Unable to input file %s\n%s\n",infile,line);exit(2);} fprintf (stdoutCopy,"##gff-version 2\n"); fprintf (stdoutCopy,"##source-version %s\n",prgCall); now = time(NULL); strftime(nowString,100,"%b/%d/%Y %X",localtime(&now)); fprintf (stdoutCopy,"##date %s\n##\n##%s ",nowString,prgCall); if (opt_r) fprintf (stdoutCopy," -r"); if (opt_t) fprintf (stdoutCopy," -t %c",frameChar); fprintf (stdoutCopy," -x %s -y %s",xName,yName); if (opt_i) fprintf (stdoutCopy," -i"); if (opt_f) fprintf (stdoutCopy," -f"); fprintf (stdoutCopy," %s\n#name1:name2\t\tsource\t\tfeature\t\tbeg1:beg2\tend1:end2\tscore\tstrand\tframe\tgroup\tcomment\n",infile); if (opt_r) { // read first line "> name [reverse ]Consistent matches" if (!(ptr = fgets(line,sizeof(line),MUMfile))) wrongFormatError(infile); if (*ptr != '>') wrongFormatError(infile); fprintf(stdoutCopy,"#%s",line); // read first MUM if(!(ptr = fgets(line,sizeof(line),MUMfile))) wrongFormatError(infile); if (sscanf(line," %ld %ld %ld",&xb,&yb,&mumlen) < 3) wrongFormatError(infile); xe = xb + mumlen - 1; ye = yb + mumlen - 1; sprintf(nextMUM,"%s:%s\tMUMmer\talignment\t%lu:%lu\t%lu:%lu\t1.000\t+:+\t%s\t# MUM\n%s:%s\tMUMmer\tfragment\t%lu:%lu\t%lu:%lu\t1.000\t+:+\t%s\n",yName,xName,yb,xb,ye,xe,frames,yName,xName,yb,xb,ye,xe,frames); while ((ptr = fgets(line,sizeof(line),MUMfile)) != NULL) { // Errors line of MUMmer output // immediately after (next) MUM // so we can print the GAP-alignment now using data from previous and next MUM as the number of errors within the alignment if (strstr(line,"Errors =") && !other) { if (sscanf(line," Errors = %ld",&errCount) < 1) wrongFormatError(infile); if (DEBUG) fprintf(stderr,"avlen: %f \n",score); score = (score - errCount)/score; // match percentage fprintf(stdoutCopy,"%s%5.3f\t+:+\t%s\t# GAP\n",nextGAP,score,frames); } // read GAP-alignment data else if (*ptr == 'T') { if (!other) { strcat(seq1,line+4); // read part of first sequence gaplen = strlen(seq1)-1; seq1[gaplen] = '\0'; // read part of second sequence if (*(ptr = fgets(line,sizeof(line),MUMfile)) != 'S') {fprintf(stderr,"%s",line);wrongFormatError(infile);} strcat(seq2,line+4); seq2[gaplen] = '\0'; // read error markers ptr = fgets(line,sizeof(line),MUMfile); if (*(line+strspn(line," ^")+1) != '\0') wrongFormatError(infile); strcat(err,line+4); err[gaplen] = '\0'; } else { // read part of second sequence if (*(ptr = fgets(line,sizeof(line),MUMfile)) != 'S') {fprintf(stderr,"%s",line);wrongFormatError(infile);} // read error markers ptr = fgets(line,sizeof(line),MUMfile); } } // next MUM else if ((*ptr == '>') || (sscanf(line," %ld %ld %ld",&nextxb,&nextyb,&mumlen) == 3)) { // there are GAP-alignment data of the GAP before this MUM which should be interpreted and printed if (strcmp(err,"")) { if (DEBUG) fprintf(stderr,"gap data: length %d-20=%d\n%s\n%s\n%s\n",strlen(seq1),strlen(seq1)-20,seq1,seq2,err); // generate fragments from gap data // cut start of next MUM from gap sequences ptre2 = strrchr(err,'^'); ptre2++; *ptre2 = '\0'; flen = ptre2 - err; *(seq1+flen) = '\0'; *(seq2+flen) = '\0'; // cut end of previous MUM from gap sequences ptre1 = strchr(err,'^'); flen = ptre1 - err; ptr11 = seq1 + flen; ptr21 = seq2 + flen; // while there is something else to do while (*ptre1 != '\0') { // get end of (now) first gap-free fragment ptr12 = strchr(ptr11,'.'); ptr22 = strchr(ptr21,'.'); // no gaps within the remaining GAP-alignment if (!ptr12 && !ptr22) { // get length flen = strlen(ptr11); // count errors (mismatches) ptre2 = ptre1 - 1; errCount = 0; for (i = 0; i < flen; i++) { ptre2++; if (*ptre2 == '^') errCount++; } // get score score = (float)(flen-errCount)/flen; if (DEBUG) fprintf(stderr,"flen %ld errCount %ld score %3.5f\n",flen,errCount,score); // print fragment record fprintf (stdoutCopy,"%s:%s\tMUMmer\tfragment\t%lu:%lu\t%lu:%lu\t%5.3f\t+:+\t%s\n",yName,xName,fyb,fxb,fyb+flen-1,fxb+flen-1,score,frames); // stop - there is nothing more to do *ptre1 = '\0'; } // gap found else { if (DEBUG) fprintf(stderr,"%s\n%s\n%s\n",ptr11,ptr21,ptre1); // extract the front fragment if (ptr12) { if (ptr22) { if (ptr12 - ptr11 < ptr22 - ptr21) { flen = ptr12 - ptr11; ptr22 = ptr21 + flen; } else { flen = ptr22 - ptr21; ptr12 = ptr11 + flen; } } else { flen = ptr12 - ptr11; ptr22 = ptr21 + flen; } } else { flen = ptr22 - ptr21; ptr12 = ptr11 + flen; } // get fragment end positions on both sequences fxe = fxb + flen - 1; fye = fyb + flen - 1; ptre2 = ptre1 - 1; //------------------------------------------------------------------------------------------------------------------------ // ATTENTION: This is a workaround for inconsistent MUMmer output: // Sometimes the MUM-gap alignment consumes the first positions of the following MUM // (possibly the Smith-Waterman-alignment does not penalize end gaps???) // So we have to cut the fragment end, if they consume MUM-positions. // Question: Are these positions always used for matches (only seen until now), or for mismatches (errors) too? if (DEBUG) fprintf(stderr,"(real) fragment end positions %ld %ld ------ (MUM start positions) %ld %ld \n",fye,fxe,yb,xb); overlap = 0; if (fxe >= xb) overlap = fxe - xb + 1; if (fye - overlap >= yb) overlap = fye - yb + 1; flen -= overlap; fxe -= overlap; fye -= overlap; //------------------------------------------------------------------------------------------------------------------------ // real fragment if (flen) { // count errors (mismatches) errCount = 0; for (i = 0; i < flen; i++) { ptre2++; if (*ptre2 == '^') errCount++; } // get score score = (float)(flen-errCount)/flen; if (DEBUG) fprintf(stderr,"flen %ld errCount %ld score %3.5f\n",flen,errCount,score); // print fragment record fprintf (stdoutCopy,"%s:%s\tMUMmer\tfragment\t%lu:%lu\t%lu:%lu\t%5.3f\t+:+\t%s\n",yName,xName,fyb,fxb,fye,fxe,score,frames); } // correction: //fxe += overlap; //overlap != 0 only if end of gap reached, that means if ptre1 = '\0' in the following //fye += overlap; //-> hence correct values of fxe and fye no more used // //ptre2 += overlap; // only used to calculate ptre1 - see below // keep positions fxb = fxe; fyb = fye; // get first position after the current gap (possibly a gap on the other strand) // xxxxxx[xxxxx]........ => strspn() = 0 // ......[xxxxx]xxxxxxxx => strspn() > 0 => hence use the larger value ptr11 = ptr12 + strspn(ptr12,"."); ptr21 = ptr22 + strspn(ptr22,"."); if (ptr11 - ptr12 < ptr21 - ptr22) { // get gap length (ca.) flen = ptr21 - ptr22; // adjust the other sequence ptr11 = ptr12 + flen; // adjust start positions of the next fragment fxb = fxb + flen + 1; fyb++; } else { // get gap length (ca.) flen = ptr11 - ptr12; // adjust the other sequence ptr21 = ptr22 + flen; // adjust start positions of the next fragment fxb++; fyb = fyb + flen + 1; } // get new start position on error marker string ptre1 = ptre2 + overlap + flen + 1; // add overlap to complete workaround } } } // ready - now reset sequences to avoid to use it repeatedly *seq1 = *seq2 = *err = '\0'; // reset sequences // now output earlier read MUM fprintf(stdoutCopy,"%s",nextMUM); // print MUM *nextMUM = '\0'; if (*ptr == '>') { other = 1; fprintf(stdoutCopy,"#%s",line); } else { xb = nextxb; yb = nextyb; if (!other) { // prepare GAP-alignment print string and average MUM-gap length fxb = xe + 1; fyb = ye + 1; fxe = xb - 1; fye = yb - 1; sprintf(nextGAP,"%s:%s\tMUMmer\talignment\t%lu:%lu\t%lu:%lu\t",yName,xName,fyb,fxb,fye,fxe); score = (fxe - fxb + fye - fyb)/2. + 1; // average gap length } // calculate data for next MUM (to be printed after data of gap before it (in MUMmer output after this MUM)) xe = xb + mumlen - 1; ye = yb + mumlen - 1; sprintf(nextMUM,"%s:%s\tMUMmer\talignment\t%lu:%lu\t%lu:%lu\t1.000\t+:+\t%s\t# MUM\n%s:%s\tMUMmer\tfragment\t%lu:%lu\t%lu:%lu\t1.000\t+:+\t%s\n",yName,xName,yb,xb,ye,xe,frames,yName,xName,yb,xb,ye,xe,frames); } } //else wrongFormatError(infile); } } else { // read first line "> name [reverse ]Consistent matches" if (!(ptr = fgets(line,sizeof(line),MUMfile))) wrongFormatError(infile); if (*ptr != '>') wrongFormatError(infile); fprintf(stdoutCopy,"#%s",line); // read first MUM if(!(ptr = fgets(line,sizeof(line),MUMfile))) wrongFormatError(infile); if (sscanf(line," %ld %ld %ld",&xb,&yb,&mumlen) < 3) wrongFormatError(infile); xe = xb + mumlen - 1; ye = yb + mumlen - 1; sprintf(nextMUM,"%s:%s\tMUMmer\talignment\t%lu:%lu\t%lu:%lu\t1.000\t+:+\t%s\t# MUM\n%s:%s\tMUMmer\tfragment\t%lu:%lu\t%lu:%lu\t1.000\t+:+\t%s\n",xName,yName,xb,yb,xe,ye,frames,xName,yName,xb,yb,xe,ye,frames); while ((ptr = fgets(line,sizeof(line),MUMfile)) != NULL) { // Errors line of MUMmer output // immediately after (next) MUM // so we can print the GAP-alignment now using data from previous and next MUM as the number of errors within the alignment if (strstr(line,"Errors =") && !other) { if (sscanf(line," Errors = %ld",&errCount) < 1) wrongFormatError(infile); if (DEBUG) fprintf(stderr,"avlen: %f \n",score); score = (score - errCount)/score; // match percentage fprintf(stdoutCopy,"%s%5.3f\t+:+\t%s\t# GAP\n",nextGAP,score,frames); } // read GAP-alignment data else if (*ptr == 'T') { if (!other) { strcat(seq1,line+4); // read part of first sequence gaplen = strlen(seq1)-1; seq1[gaplen] = '\0'; // read part of second sequence if (*(ptr = fgets(line,sizeof(line),MUMfile)) != 'S') {fprintf(stderr,"%s",line);wrongFormatError(infile);} strcat(seq2,line+4); seq2[gaplen] = '\0'; // read error markers ptr = fgets(line,sizeof(line),MUMfile); if (*(line+strspn(line," ^")+1) != '\0') wrongFormatError(infile); strcat(err,line+4); err[gaplen] = '\0'; } else { // read part of second sequence if (*(ptr = fgets(line,sizeof(line),MUMfile)) != 'S') {fprintf(stderr,"%s",line);wrongFormatError(infile);} // read error markers ptr = fgets(line,sizeof(line),MUMfile); } } // next MUM else if ((*ptr == '>') || (sscanf(line," %ld %ld %ld",&nextxb,&nextyb,&mumlen) == 3)) { // there are GAP-alignment data of the GAP before this MUM which should be interpreted and printed if (strcmp(err,"")) { if (DEBUG) fprintf(stderr,"gap data: length %d-20=%d\n%s\n%s\n%s\n",strlen(seq1),strlen(seq1)-20,seq1,seq2,err); // generate fragments from gap data // cut start of next MUM from gap sequences ptre2 = strrchr(err,'^'); ptre2++; *ptre2 = '\0'; flen = ptre2 - err; *(seq1+flen) = '\0'; *(seq2+flen) = '\0'; // cut end of previous MUM from gap sequences ptre1 = strchr(err,'^'); flen = ptre1 - err; ptr11 = seq1 + flen; ptr21 = seq2 + flen; // while there is something else to do while (*ptre1 != '\0') { // get end of (now) first gap-free fragment ptr12 = strchr(ptr11,'.'); ptr22 = strchr(ptr21,'.'); // no gaps within the remaining GAP-alignment if (!ptr12 && !ptr22) { // get length flen = strlen(ptr11); // count errors (mismatches) ptre2 = ptre1 - 1; errCount = 0; for (i = 0; i < flen; i++) { ptre2++; if (*ptre2 == '^') errCount++; } // get score score = (float)(flen-errCount)/flen; if (DEBUG) fprintf(stderr,"flen %ld errCount %ld score %3.5f\n",flen,errCount,score); // print fragment record fprintf (stdoutCopy,"%s:%s\tMUMmer\tfragment\t%lu:%lu\t%lu:%lu\t%5.3f\t+:+\t%s\n",xName,yName,fxb,fyb,fxb+flen-1,fyb+flen-1,score,frames); // stop - there is nothing more to do *ptre1 = '\0'; } // gap found else { if (DEBUG) fprintf(stderr,"%s\n%s\n%s\n",ptr11,ptr21,ptre1); // extract the front fragment if (ptr12) { if (ptr22) { if (ptr12 - ptr11 < ptr22 - ptr21) { flen = ptr12 - ptr11; ptr22 = ptr21 + flen; } else { flen = ptr22 - ptr21; ptr12 = ptr11 + flen; } } else { flen = ptr12 - ptr11; ptr22 = ptr21 + flen; } } else { flen = ptr22 - ptr21; ptr12 = ptr11 + flen; } // get fragment end positions on both sequences fxe = fxb + flen - 1; fye = fyb + flen - 1; ptre2 = ptre1 - 1; //------------------------------------------------------------------------------------------------------------------------ // ATTENTION: This is a workaround for inconsistent MUMmer output: // Sometimes the MUM-gap alignment consumes the first positions of the following MUM // (possibly the Smith-Waterman-alignment does not penalize end gaps???) // So we have to cut the fragment end, if they consume MUM-positions. // Question: Are these positions always used for matches (only seen until now), or for mismatches (errors) too? if (DEBUG) fprintf(stderr,"(real) fragment end positions %ld %ld ------ (MUM start positions) %ld %ld \n",fxe,fye,xb,yb); overlap = 0; if (fxe >= xb) overlap = fxe - xb + 1; if (fye - overlap >= yb) overlap = fye - yb + 1; flen -= overlap; fxe -= overlap; fye -= overlap; //------------------------------------------------------------------------------------------------------------------------ // real fragment if (flen) { // count errors (mismatches) errCount = 0; for (i = 0; i < flen; i++) { ptre2++; if (*ptre2 == '^') errCount++; } // get score score = (float)(flen-errCount)/flen; if (DEBUG) fprintf(stderr,"flen %ld errCount %ld score %3.5f\n",flen,errCount,score); // print fragment record fprintf (stdoutCopy,"%s:%s\tMUMmer\tfragment\t%lu:%lu\t%lu:%lu\t%5.3f\t+:+\t%s\n",xName,yName,fxb,fyb,fxe,fye,score,frames); } // correction: //fxe += overlap; //overlap != 0 only if end of gap reached, that means if ptre1 = '\0' in the following //fye += overlap; //-> hence correct values of fxe and fye no more used // //ptre2 += overlap; // only used to calculate ptre1 - see below // keep positions fxb = fxe; fyb = fye; // get first position after the current gap (possibly a gap on the other strand) // xxxxxx[xxxxx]........ => strspn() = 0 // ......[xxxxx]xxxxxxxx => strspn() > 0 => hence use the larger value ptr11 = ptr12 + strspn(ptr12,"."); ptr21 = ptr22 + strspn(ptr22,"."); if (ptr11 - ptr12 < ptr21 - ptr22) { // get gap length (ca.) flen = ptr21 - ptr22; // adjust the other sequence ptr11 = ptr12 + flen; // adjust start positions of the next fragment fxb = fxb + flen + 1; fyb++; } else { // get gap length (ca.) flen = ptr11 - ptr12; // adjust the other sequence ptr21 = ptr22 + flen; // adjust start positions of the next fragment fxb++; fyb = fyb + flen + 1; } // get new start position on error marker string ptre1 = ptre2 + overlap + flen + 1; // add overlap to complete workaround } } } // ready - now reset sequences to avoid to use it repeatedly *seq1 = *seq2 = *err = '\0'; // reset sequences // now output earlier read MUM fprintf(stdoutCopy,"%s",nextMUM); // print MUM *nextMUM = '\0'; if (*ptr == '>') { other = 1; fprintf(stdoutCopy,"#%s",line); } else { xb = nextxb; yb = nextyb; if (!other) { // prepare GAP-alignment print string and average MUM-gap length fxb = xe + 1; fyb = ye + 1; fxe = xb - 1; fye = yb - 1; sprintf(nextGAP,"%s:%s\tMUMmer\talignment\t%lu:%lu\t%lu:%lu\t",xName,yName,fxb,fyb,fxe,fye); score = (fxe - fxb + fye - fyb)/2. + 1; // average gap length } // calculate data for next MUM (to be printed after data of gap before it (in MUMmer output after this MUM)) xe = xb + mumlen - 1; ye = yb + mumlen - 1; sprintf(nextMUM,"%s:%s\tMUMmer\talignment\t%lu:%lu\t%lu:%lu\t1.000\t+:+\t%s\t# MUM\n%s:%s\tMUMmer\tfragment\t%lu:%lu\t%lu:%lu\t1.000\t+:+\t%s\n",xName,yName,xb,yb,xe,ye,frames,xName,yName,xb,yb,xe,ye,frames); } } //else wrongFormatError(infile); } } if (*nextMUM != '\0') fprintf(stdoutCopy,"%s",nextMUM); if (fclose(MUMfile)) fprintf(stderr,"Error: Unable to close file %s\n",infile); if (opt_f && fclose(stdoutCopy)) fprintf(stderr,"Error: Unable to close file %s\n",outfile); return; } /**************************************************************************** * * Function: processSimfile * * Parameters: --- * * Returns: --- * * Description: read alignment data from sim file * ****************************************************************************/ void processSimfile() { FILE *simfile; char line[MAXSTRING]; /*----- read line -----*/ char seqboundsline[MAXSTRING]; char *ptr; /*----- pointer to line -----*/ char waste[MAXSTRING]; char source[MAXSTRING]; float score; unsigned short int lavCount = 1; unsigned long int xb, xe, yb, ye; unsigned long int yh; char strand1; char strand2; time_t now; char nowString[100]; int scancount; unsigned long int xseqLen_4; /* length of x sequence -5 */ unsigned long int yseqLen_4; /* length of y sequence -5 */ unsigned long int yrev; /* start position + end position of y sequence --- this term is used to calculate positions of rev. compl. fragments on forward strand */ unsigned short int aliPrinted = 0; char aliPrintString[MAXSTRING]; /*----- open alignment file -----*/ simfile = fopen(infile, "r"); if (simfile == NULL) {fprintf(stderr,"Error: Unable to input file %s\n%s\n",infile,line);exit(2);} /*----- read lav-line --- it is a SIM file because of previous test in calling subroutine doit -----*/ ptr = fgets(line,sizeof(line),simfile); fprintf (stdoutCopy,"##gff-version 2\n"); fprintf (stdoutCopy,"##source-version %s\n",prgCall); now = time(NULL); strftime(nowString,100,"%b/%d/%Y %X",localtime(&now)); fprintf (stdoutCopy,"##date %s\n##\n##%s ",nowString,prgCall); if (opt_r) fprintf (stdoutCopy," -r"); if (opt_t) fprintf (stdoutCopy," -t %c",frameChar); fprintf (stdoutCopy," -x %s -y %s",xName,yName); if (opt_i) fprintf (stdoutCopy," -i"); if (opt_f) fprintf (stdoutCopy," -f"); fprintf (stdoutCopy," %s\n#name1:name2\t\tsource\t\tfeature\t\tbeg1:beg2\tend1:end2\tscore\tstrand\tframe\tgroup\tcomment\n",infile); while ((ptr = fgets(line,sizeof(line),simfile)) != NULL) { if (strstr(line,"#:lav") == ptr) { lavCount++; if (lavCount > 2) wrongFormatError(infile); } else if (strstr(line,"d {") == ptr) { if (fgets(line,sizeof(line),simfile) != NULL) { if (sscanf(line," \"%s ",waste) < 1) wrongFormatError(infile); ptr = strrchr(waste,'/'); if (ptr != NULL) strcpy(source,ptr+1); else strcpy(source,waste); } while (((ptr = fgets(line,sizeof(line),simfile)) != NULL) && (*ptr != '}')) {} if (ptr == NULL) wrongFormatError(infile); } else if (strstr(line,"s {") == ptr) { if ((fgets(line,sizeof(line),simfile) != NULL) && (sscanf(line,"%*s %lu %lu ", &xb, &xe) < 2)) wrongFormatError(infile); if ((fgets(line,sizeof(line),simfile) != NULL) && (sscanf(line,"%*s %lu %lu ", &yb, &ye) < 2)) wrongFormatError(infile); xseqLen_4 = xe - xb - 4; yseqLen_4 = ye - yb - 4; yrev = yb + ye; if (opt_r) sprintf (seqboundsline,"\t%s\tseqbounds\t%lu:%lu\t%lu:%lu\t.\t.\t.\n",source,yb,xb,ye,xe); else sprintf (seqboundsline,"\t%s\tseqbounds\t%lu:%lu\t%lu:%lu\t.\t.\t.\n",source,xb,yb,xe,ye); while (((ptr = fgets(line,sizeof(line),simfile)) != NULL) && (*ptr != '}')) {} if (ptr == NULL) wrongFormatError(infile); } else if (strstr(line,"a {") == ptr) { if ((fgets(line,sizeof(line),simfile) == NULL) || (sscanf(line," s %f",&score) < 1)) wrongFormatError(infile); /*----- start point -----*/ if ((fgets(line,sizeof(line),simfile) == NULL) || (sscanf(line," b %lu %lu",&xb,&yb) < 2)) wrongFormatError(infile); /*----- end point -----*/ if ((fgets(line,sizeof(line),simfile) == NULL) || (sscanf(line," e %lu %lu",&xe,&ye) < 2)) wrongFormatError(infile); if (!opt_i || ((xe - xb < xseqLen_4) && (ye - yb < yseqLen_4))) { counta++; nmp = 0.; aliPrinted = 0; avlen = (abs(xe-xb) + abs(ye-yb))/2 + 1; if (lavCount > 1) { /* y-values need to be converted */ yb = yrev-yb; ye = yrev-ye; } if (xe < xb) { yh = xb; xb = xe; xe = yh; strand1 = '-'; } else strand1 = '+'; if (ye < yb) { yh = yb; yb = ye; ye = yh; strand2 = '-'; } else strand2 = '+'; if (opt_r) sprintf (aliPrintString,"%s:%s\t%s\talignment\t%lu:%lu\t%lu:%lu\t%5.3f\t%c:%c\t%c:%c\n",yName,xName,source,yb,xb,ye,xe,score,strand2,strand1,frameChar,frameChar); else sprintf (aliPrintString,"%s:%s\t%s\talignment\t%lu:%lu\t%lu:%lu\t%5.3f\t%c:%c\t%c:%c\n",xName,yName,source,xb,yb,xe,ye,score,strand1,strand2,frameChar,frameChar); } else { fprintf(stderr,"%s: Warning: Skipped alignment with score %f (probably a self alignment of full sequence)\n",prgCall,score); while (((ptr = fgets(line,sizeof(line),simfile)) != NULL) && (*ptr != '}')) {} if (ptr == NULL) wrongFormatError(infile); } } else if (strstr(line," l") == ptr) { if ((scancount = sscanf(line,"%*s %ld %ld %ld %ld %f",&xb,&yb,&xe,&ye,&score)) < 4) wrongFormatError(infile); if ((scancount == 4)) score = 100.; nmp += (abs(xe - xb)+1) * score/(avlen*100.); if (lavCount > 1) { /* y-values need to be converted */ yb = yrev-yb; ye = yrev-ye; } if (xe < xb) { yh = xb; xb = xe; xe = yh; strand1 = '-'; } else strand1 = '+'; if (ye < yb) { yh = yb; yb = ye; ye = yh; strand2 = '-'; } else strand2 = '+'; if (aliPrinted) { if (opt_r) fprintf (stdoutCopy,"%s:%s\t%s\tfragment\t%lu:%lu\t%lu:%lu\t%5.3f\t%c:%c\t%c:%c\t## cumulative nmp: %.3f\n",yName,xName,source,yb,xb,ye,xe,score/100.,strand2,strand1,frameChar,frameChar,nmp); else fprintf (stdoutCopy,"%s:%s\t%s\tfragment\t%lu:%lu\t%lu:%lu\t%5.3f\t%c:%c\t%c:%c\t## cumulative nmp: %.3f\n",xName,yName,source,xb,yb,xe,ye,score/100.,strand1,strand2,frameChar,frameChar,nmp); } else { if (counta == 1) { if (opt_r) fprintf (stdoutCopy,"%s:%s%s",yName,xName,seqboundsline); else fprintf (stdoutCopy,"%s:%s%s",xName,yName,seqboundsline); } if (opt_r) fprintf (stdoutCopy,"%s%s:%s\t%s\tfragment\t%lu:%lu\t%lu:%lu\t%5.3f\t%c:%c\t%c:%c\t## cumulative nmp: %.3f\n",aliPrintString,yName,xName,source,yb,xb,ye,xe,score/100.,strand2,strand1,frameChar,frameChar,nmp); else fprintf (stdoutCopy,"%s%s:%s\t%s\tfragment\t%lu:%lu\t%lu:%lu\t%5.3f\t%c:%c\t%c:%c\t## cumulative nmp: %.3f\n",aliPrintString,xName,yName,source,xb,yb,xe,ye,score/100.,strand1,strand2,frameChar,frameChar,nmp); aliPrinted = 1; } } else if ((strstr(line," f") == ptr) && opt_i) { counta--; /* read to end of block - skip all l line without score data */ while (((ptr = fgets(line,sizeof(line),simfile)) != NULL) && (*ptr != '}')) {} if (ptr == NULL) wrongFormatError(infile); } } if (fclose(simfile)) fprintf(stderr,"Error: Unable to close file %s\n",infile); if (opt_f && fclose(stdoutCopy)) fprintf(stderr,"Error: Unable to close file %s\n",outfile); return; } /**************************************************************************** * * Function: start_time * Parameters: --- * Returns: --- * * Description: get current time * ****************************************************************************/ void start_time(void) { timer.begin_clock = clock(); timer.begin_time = time(NULL); return; } /**************************************************************************** * * Function: print_time * Parameters: --- * Returns: --- * * Description: print left time * ****************************************************************************/ void print_time(void) { double user_time, real_time; char s1[MAXSTRING], s2[MAXSTRING]; int n1, n2, width; user_time = (clock()-timer.begin_clock)/((double) CLOCKS_PER_SEC); real_time = difftime(time(NULL),timer.begin_time); n1 = sprintf(s1,"%.2f",user_time); n2 = sprintf(s2,"%.2f",real_time); width = (n1 > n2) ? n1 : n2; fprintf(stderr,"User time: %*.2f seconds\nReal time: %*.2f seconds\n\n",width,user_time,width,real_time); return; } /**************************************************************************** * * Function: printUsage * Parameters: --- * Returns: --- * * Description: print usage to screen * ****************************************************************************/ void printUsage(void) { fprintf (stderr, "\n\n\n" "NAME\n" " %s - Module to translate a MUMmer output files into gff formatted output.\n\n" "SYNOPSIS\n" " %s [-r] [-t <.|0|1|2>] [-x ] [-y ] [-H] [-f] [-h] \n\n" "DESCRIPTION\n" " \n\n" "OPTIONS\n" "\n-r interchange the order of sequences (sequence 1 on y-axis, sequence 2 on x-axis)" "\n-t <.|0|1|2> put label 'frame' in gff output" "\n-x specify the species name for species 1 (default: Seq1)" "\n-y specify the species name for species 2 (default: Seq2)" "\n-i ignore full sequence identities" "\n-f write output to file" "\n-h print this help text\n\n\n",prgCall,prgCall); exit(1); } /**************************************************************************** * * Function: wrongFormatError * Parameters: char* filename * Returns: - * Description: output error message and exit * ****************************************************************************/ void wrongFormatError(const char* filename) { fprintf(stderr,"File %s is not in proper format!\n",filename); exit(3); } /**************************************************************************** * * Function: allocationError * Parameters: - * Returns: - * Description: output error message and exit * ****************************************************************************/ void allocationError() { fprintf(stderr,"Allocation failure!\n"); exit(9); } gff2aplot-2.0.orig/src/ali2gff/ali2gff.h0000775000000000000000000000364407667662606017761 0ustar rootroot00000000000000/**************************************************************************** * * Copyright (C) 2001 Steffi Gebauer-Jung * Max-Planck-Institute of Chemical Ecology * Jena, Germany * All rights reserved. * * Language: ANSI C * * Description: * * $Id: ali2gff.h,v 1.4 2001/09/26 16:01:50 steffi Exp $ * ****************************************************************************/ /***************************************************************************** * include * *****************************************************************************/ #include #include #include #include #include #include /***************************************************************************** * definitions * *****************************************************************************/ #define MAXSTRING 1000 #define MAX_SEQUENCE_LENGTH 10001000 #define MAXARRAY 410000 #define ALLOC 1000 /***************************************************************************** * typedef * *****************************************************************************/ static struct { long begin_clock; long begin_time; } timer = {0,0}; /***************************************************************************** * function headers * *****************************************************************************/ void doit(); void processMumfile(); void processGFFfile(); void start_time(void); void print_time(void); void printUsage(void); void wrongFormatError(const char* filename); void allocationError(); int sortScores(const float *score1, const float *score2); void processSimfile(); gff2aplot-2.0.orig/src/ali2gff/Makefile0000775000000000000000000000120507667662606017725 0ustar rootroot00000000000000#**************************************************************************** # # Copyright (C) 2001 Steffi Gebauer-Jung # Max-Planck-Institute of Chemical Ecology # Jena, Germany # All rights reserved. # # Language: ANSI C # # Description: Makefile for ali2gff # # $Id: Makefile,v 1.3 2001/09/26 16:01:50 steffi Exp $ # #***************************************************************************/ CC = gcc -Wall .PHONY : clean print .DEFAULT : all .SUFFIXES : all : ali2gff ali2gff : ali2gff.c ali2gff.h Makefile @$(CC) -o ali2gff ali2gff.c; @chmod 755 ali2gff clean : -@rm -f ali2gff gff2aplot-2.0.orig/src/blat2gff.pl0000644000000000000000000001236607667662607017005 0ustar rootroot00000000000000# # ################################################################## # # blat2gff.pl # # ################################################################## # # blat2gff.pl [options] < inputfile > outputfile # # Converts BLAT output files to GFF formatted files. # # Copyright (C) 2001-2003 -- Josep Francesc ABRIL FERRANDO # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; if not, write to the Free Software # Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA. # # ################################################################## # # $Id: blat2gff.nw,v 1.2 2003/02/28 17:21:12 jabril Exp $ # use strict; # my $PROGRAM = 'blat2gff.pl'; my $VERSION = '1.0'; my $DATE = localtime; my $USER = defined( $ENV{USER} ) ? $ENV{USER} : 'Child Process'; my $host = `hostname`; chomp($host); # # # MODULES # # # VARIABLES # my @frame = ( 3, 1, 2 ); my %blat = ( STRAND => 8, Q_NAME => 9, Q_LEN => 10, Q_ORI => 11, Q_END => 12, T_NAME => 13, T_LEN => 14, T_ORI => 15, T_END => 16, B_NUM => 17, B_LEN => 18, B_QPOS => 19, B_TPOS => 20, ); my %gff = (); my $maxfields = 21; my %group = (); my ( $group_cnt, $rec_cnt ) = (0) x 2; # GetSRsAln.pl like: #$srs->{QUERY}\t$blst_prg\tsr\t$srs->{START_Q}\t$srs->{END_Q} #\t$srs->{SCORE}\t$srs->{STRAND_Q}\t$srs->{FRAME_Q} #\tTarget \"$srs->{SUBJECT}\"\t$srs->{START_S}\t$srs->{END_S} #\tE_value $srs->{E_VALUE}\tStrand $srs->{STRAND_S} #\tFrame $srs->{FRAME_S}\t\#Projection $srs->{PROJECTION} my $GFFstring = ( "\%s\t" x 8 ) . 'Target "%s"' . "\t\%s\t\%s;\tStrand \%s;\tFrame \%s\n"; # # MAIN LOOP # while () { my @f = (); next unless /^\d/o; chomp; @f = split /\s+/og, $_; do { # ensure that there are 21 fields print STDERR "### NOT enough fields for this record:\n##### @f \n"; next; } unless scalar(@f) == $maxfields; %gff = (); ++$rec_cnt; $f[ $blat{STRAND} ] =~ /(.)(.)/og && ( $gff{Q_STRAND} = $1, $gff{T_STRAND} = $2 ); do { # ensure that strands are +/- print STDERR "### CANNOT find strand for this record:\n##### @f \n"; next; } unless ( $gff{Q_STRAND} =~ /[+-]/o && $gff{T_STRAND} =~ /[+-]/o ); $f[ $blat{Q_NAME} ] =~ m{/?([^/]+)$}og && ( $gff{Q_NAME} = $1 ); $f[ $blat{T_NAME} ] =~ m{/?([^/]+)$}og && ( $gff{T_NAME} = $1 ); defined( $group{"$gff{T_NAME}.$gff{T_STRAND}"} ) || ( $group{"$gff{T_NAME}.$gff{T_STRAND}"} = ++$group_cnt ); $gff{GROUP} = $group{"$gff{T_NAME}.$gff{T_STRAND}"}; $gff{Q_LEN} = $f[ $blat{Q_LEN} ]; # seq lengths are OK $gff{T_LEN} = $f[ $blat{T_LEN} ]; $gff{Q_ORI} = $f[ $blat{Q_ORI} ] + 1; # HSP coords start at 0, not at 1 $gff{Q_END} = $f[ $blat{Q_END} ] + 1; $gff{T_ORI} = $f[ $blat{T_ORI} ] + 1; $gff{T_END} = $f[ $blat{T_END} ] + 1; $gff{Q_FRAME} = &get_frame( $gff{Q_STRAND}, $gff{Q_LEN}, $gff{Q_ORI}, $gff{Q_END} ); $gff{T_FRAME} = &get_frame( $gff{T_STRAND}, $gff{T_LEN}, $gff{T_ORI}, $gff{T_END} ); $gff{B_NUM} = $f[ $blat{B_NUM} ]; @{ $gff{B_LEN} } = split /,/og, $f[ $blat{B_LEN} ]; @{ $gff{B_QPOS} } = split /,/og, $f[ $blat{B_QPOS} ]; @{ $gff{B_TPOS} } = split /,/og, $f[ $blat{B_TPOS} ]; printf STDOUT "# " . $GFFstring, $gff{Q_NAME}, "BLAT", "$gff{Q_LEN}:$gff{T_LEN}", $gff{Q_ORI}, $gff{Q_END}, 0, $gff{Q_STRAND}, $gff{Q_FRAME}, "$gff{T_NAME}.$gff{GROUP}.$rec_cnt", $gff{T_ORI}, $gff{T_END}, $gff{T_STRAND}, $gff{T_FRAME}; &loop_HSPs($rec_cnt); }; # while read input exit(0); # # FUNCTIONS # sub get_frame() { my ( $strand, $len, $ori, $end ) = @_; if ( $strand eq '-' ) { return $frame[ ( ( $len - $end + 1 ) % 3 ) ]; } else { return $frame[ ( $ori % 3 ) ]; } } # get_frame sub get_hsp() { my ( $s, $L, $l, $n ) = @_; my ( $o, $e ); if ( $s eq '-' ) { $e = $L - $n; $o = $e - $l; } else { $o = $n; $e = $o + $l; } $o++; $e++; # HSP coords start at 0, not at 1 return ( $o, $e, &get_frame( $s, $L, $o, $e ) ); } # get_hsp sub loop_HSPs() { my ($num) = @_; my ( $c, $l, $q, $t, $qo, $qe, $qf, $to, $te, $tf ); for ( $c = 0 ; $c < $gff{B_NUM} ; $c++ ) { $l = $gff{B_LEN}[$c]; $q = $gff{B_QPOS}[$c]; $t = $gff{B_TPOS}[$c]; ( $qo, $qe, $qf ) = &get_hsp( $gff{Q_STRAND}, $gff{Q_LEN}, $l, $q ); ( $to, $te, $tf ) = &get_hsp( $gff{T_STRAND}, $gff{T_LEN}, $l, $t ); printf STDOUT $GFFstring, $gff{Q_NAME}, "blat", "hsp", $qo, $qe, 0, $gff{Q_STRAND}, $qf, "$gff{T_NAME}.$gff{GROUP}.$num", $to, $te, $gff{T_STRAND}, $tf; }; # for } # loop_HSPs gff2aplot-2.0.orig/doc/0000755000000000000000000000000010220353535014677 5ustar rootroot00000000000000gff2aplot-2.0.orig/doc/GFF2APLOT_MANUAL.ps.gz0000664000000000000000000020243407667662607020242 0ustar 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WU-BLAST Analysis of two Homologous Genes
 
   

Summary

In this tutorial we will see examples on parseblast output when applying to a WU-BLAST file. This perl script is included in the gff2aplot distribution. There are three basic aligment formats that can be generated from a blast file by parseblast.pl, but all three must produce the same plots by gff2aplot. We will also see the raw output from gff2aplot and how to customize it a little bit.

NOTE.- For the sake of clarity, we are going to use long names for the comand-line switches. See the command-line help if you prefer short names for those cases in which a short name is available.
Bitmaps for the examples were generated as PNGs (Portable Network Graphics). If your browser is not ready for such format yet, you can visualize the PDF or PS versions by clicking on the links below each snapshot. Links to customization files, log files, GFF input files and output PostScript figures, are also available on each command-line shown.

Contents


Parsing BLAST Output


    
$BIN/parseblast.pl --verbose --no-frame --aplot             \
                   -- taf6.mmhs.genomic.blastn              \
                    > taf6.mmhs.genomic.blastn.aplot.gff    \
                   2> taf6.mmhs.genomic.blastn.aplotgff.log
  

    
$BIN/parseblast.pl --verbose --no-frame            \
                   --fullgff --compact-tags        \
                   -- taf6.mmhs.genomic.blastn     \
                    > taf6.mmhs.genomic.blastn.gff \
                   2> taf6.mmhs.genomic.blastn.log
  

    
$BIN/parseblast.pl --verbose --no-frame --fullgff       \
                   -- taf6.mmhs.genomic.blastn          \
                    > taf6.mmhs.genomic.blastn.full.gff \
                   2> taf6.mmhs.genomic.blastn.full.log
  

    
$BIN/parseblast.pl --verbose --no-frame --aplot              \
                   -- taf6.mmhs.genomic.tblastx              \
                    > taf6.mmhs.genomic.tblastx.aplot.gff    \
                   2> taf6.mmhs.genomic.tblastx.aplotgff.log
  

Raw Output


Empty Plot
 [PNG] [PS] [PDF] 
    
gff2aplot.pl                        \
    --verbose                       \
    -- taf6.mmhs.genomic.blastn.gff \
       taf6.mm.gene.gff             \
       taf6.hs.gene.gff             \
     > taf6.mmhs.genomic.blastn.ps  \
    2> taf6.mmhs.genomic.blastn.log
  

Empty Plot
 [PNG] [PS] [PDF] 
    
gff2aplot.pl                              \
    --verbose                             \
    -- taf6.mmhs.genomic.blastn.aplot.gff \
       taf6.mm.gene.gff                   \
       taf6.hs.gene.gff                   \
     > taf6.mmhs.genomic.blastn.aplot.ps  \
    2> taf6.mmhs.genomic.blastn.aplot.log
  

Empty Plot
 [PNG] [PS] [PDF] 
    
gff2aplot.pl                               \
    --verbose                              \
    --show-percent-box                     \
    -- taf6.mmhs.genomic.tblastx.aplot.gff \
       taf6.mm.gene.gff                    \
       taf6.hs.gene.gff                    \
     > taf6.mmhs.genomic.tblastx.aplot.ps  \
    2> taf6.mmhs.genomic.tblastx.aplot.log
  

Modifying Plot Settings


Empty Plot
 [PNG] [PS] [PDF] 
    
gff2aplot.pl                                                    \
    --verbose                                                   \
    --title 'Hsap/Mmus taf6 Orthologous Gene'                   \
    --subtitle                                                  \
      'Figure displays BLASTN results for this genomic region.' \
    --show-percent-box                                          \
    --custom-filename taf6.tblastx.rc                           \
    -- taf6.mmhs.genomic.blastn.aplot.gff                       \
       taf6.mm.gene.gff                                         \
       taf6.hs.gene.gff                                         \
     > taf6.mmhs.genomic.blastn.aplot_conf.ps                   \
    2> taf6.mmhs.genomic.blastn.aplot_conf.log
  

Empty Plot
 [PNG] [PS] [PDF] 
    
gff2aplot.pl                                                     \
    --verbose                                                    \
    --title 'Hsap/Mmus taf6 Orthologous Gene'                    \
    --subtitle                                                   \
      'Figure displays TBLASTX results for this genomic region.' \
    --show-percent-box                                           \
    --custom-filename taf6.tblastx.rc                            \
    -- taf6.mmhs.genomic.tblastx.aplot.gff                       \
       taf6.mm.gene.gff                                          \
       taf6.hs.gene.gff                                          \
     > taf6.mmhs.genomic.tblastx.aplot_conf.ps                   \
    2> taf6.mmhs.genomic.tblastx.aplot_conf.log
  

Merging Data


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 [PNG] [PS] [PDF] 
    
gff2aplot.pl                                   \
    --verbose                                  \
    --title 'Hsap/Mmus taf6 Orthologous Gene'  \
    --subtitle                                 \
      'Merging BLASTN and TBLASTX alignments.' \
    --show-percent-box                         \
    --custom-filename taf6.tblastx.rc          \
    -- taf6.mmhs.genomic.blastn.aplot.gff      \
       taf6.mmhs.genomic.tblastx.aplot.gff     \
       taf6.mm.gene.gff                        \
       taf6.hs.gene.gff                        \
     > taf6.mmhs.genomic.blast.merge.ps        \
    2> taf6.mmhs.genomic.blast.merge.log
  

Empty Plot
 [PNG] [PS] [PDF] 
    
gff2aplot.pl                                                       \
    --verbose                                                      \
    --title 'Hsap/Mmus taf6 Orthologous Gene'                      \
    --subtitle                                                     \
      'BLASTN alignments shown in green, TBLASTX results in blue.' \
    --show-percent-box                                             \
    --custom-filename taf6.tblastx.rc                              \
    --source-var 'BLASTN::alignment_color=darkgreen'               \
    --source-var 'TBLASTX::alignment_color=darkblue'               \
    -- taf6.mmhs.genomic.blastn.aplot.gff                          \
       taf6.mmhs.genomic.tblastx.aplot.gff                         \
       taf6.mm.gene.gff                                            \
       taf6.hs.gene.gff                                            \
     > taf6.mmhs.genomic.blast.merge_conf.ps                       \
    2> taf6.mmhs.genomic.blast.merge_conf.log
  

  
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gff2aplot-2.0.orig/examples/wublast/taf6.mm.gene.gb0000664000000000000000000001466707667662610022172 0ustar rootroot00000000000000LOCUS Taf6 2192 bp mRNA linear ROD 14-FEB-2003 DEFINITION Mus musculus TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor (Taf6), mRNA. ACCESSION NM_009315 VERSION NM_009315.1 GI:6678214 KEYWORDS . SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus. REFERENCE 1 (sites) AUTHORS Umehara,T., Kida,S. and Horikoshi,M. TITLE Isolation of a cDNA encoding a mouse TFIID subunit containing histone H4 homology JOURNAL Gene 161 (2), 301-302 (1995) MEDLINE 95394377 PUBMED 7665100 REFERENCE 2 (bases 1 to 2192) AUTHORS Horikoshi,M. JOURNAL Unpublished COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from D49439.1. FEATURES Location/Qualifiers source 1..2192 /organism="Mus musculus" /db_xref="taxon:10090" /chromosome="5" /cell_line="B8" /cell_type="erythroleukemia" gene 1..2192 /gene="Taf6" /note="synonyms: p80, 80kDa, AW549759" /db_xref="LocusID:21343" /db_xref="MGI:109129" CDS 11..2047 /gene="Taf6" /note="TATA box binding protein (Tbp)-associated factor, RNA polymerase II, E; TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80 kDa" /codon_start=1 /product="TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor" /protein_id="NP_033341.1" /db_xref="GI:6678215" /db_xref="LocusID:21343" /db_xref="MGI:109129" /translation="MAEEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVS YRIKEIAQDALKFMHMGKRQKLTTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGR ELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAE ATEPLKSAKPGQEEDGPLKGKGQGAAAADGKGKEKKAPPLLEGAPFRLKPRSIHELSV EQQLYYKEITEACVGSCEAKRAEALQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNL ALLIYLMRMVKALMDNPTLYLEKYVHELIPAVMTCIVSRQLCLRPDVDNHWALRDFAA RLVAQICKHFSTTTNNIQSRITKTFTKSWVDEKTPWTTRYGSIAGLAELGHDVIKTLI LPRLQQEGERIRSVLDGPVLSNIDRIGADHVQSLLLKHCAPVLAKLRPPPDNQDAYRG EFGSLGPLLCSHVVKARAQAALQAQQVNRTTLTITQPRPTLTLSQAPQPGPRTPGLLK VPGSIALPVQTLVSARAAAPPQPSPPPTKFIVMSSSSSASSTQQVLSLSTSAPGSGST TTSPVTTTVPSVQPIVKLVSTATTAPPSTAPAGSGSVQKYIVVSLPPTGEGKGGPPSH PSPVPPSSSSPSPLGGSTLCGGKQEAGDSPPPAPGTPKANGSQPTGPGSPQPAL" misc_feature 35..1234 /gene="Taf6" /note="TAF6; Region: COG5095, TAF6, Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]" /db_xref="CDD:COG5095" misc_feature 38..238 /gene="Taf6" /note="TAF; Region: TATA box binding protein associated factor (TAF). TAF proteins adopt a histone-like fold" /db_xref="CDD:pfam02969" polyA_signal 2175..2180 /gene="Taf6" polyA_site 2192 /gene="Taf6" BASE COUNT 518 a 643 c 556 g 475 t ORIGIN 1 gaattccagc atggccgagg agaagaaact gaaactcagc aatactgtgt tgccctctga 61 gtccatgaag gtggtggcag aatctatggg cattgctcag attcaggagg agacttgcca 121 gctactgaca gatgaggtca gctaccgcat caaggagatt gcccaggatg ccctgaagtt 181 catgcacatg gggaaacgac agaagctcac taccagtgac attgactatg cattgaagtt 241 aaagaatgtg gagccactgt atggcttcca tgctcaggag ttcatccctt tccggtttgc 301 ctctggcggg ggccgggagc tgtacttcta tgaagagaag gaagtggacc tgagtgacat 361 catcaacacc cctctgcctc gggtgcctct ggatgtctgc ctcaaagctc attggctaag 421 catcgaaggc tgccagccag ctataccaga gaatccaccc ccagctccca aagagcagca 481 gaaggctgag gccacagaac ccctgaaatc agcaaagcca ggccaagaag aagatggacc 541 cctgaaaggc aaaggtcaag gggcagctgc agctgatggc aaaggaaaag agaagaaggc 601 acctcccttg ctggaggggg cccctttccg cctgaagccc cgcagcatcc atgagctgtc 661 tgtggagcag cagctgtatt acaaggagat cacggaagcc tgtgtgggat cctgtgaggc 721 caagagagcg gaagctctgc agagcattgc cacggaccca gggctctatc agatgctacc 781 acggttcagt accttcatct cagagggggt ccgtgtgaat gtagttcaga ataacctggc 841 cttgctcatc tacctgatgc gtatggtgaa ggccctgatg gacaacccca cactgtatct 901 agagaaatat gtgcatgagc tcattccagc agtaatgacc tgcattgtga gtagacagct 961 gtgcttgcgg ccagatgtgg acaatcactg ggcactccgg gattttgctg cccgtctagt 1021 ggcccaaatc tgtaagcatt tcagcacaac caccaacaac atccaatccc gaatcactaa 1081 gacctttacc aagagctggg tcgacgagaa gactccatgg acaactcgat atggctccat 1141 tgcaggccta gcagagctgg gacatgatgt gattaagacg ctaattctgc caaggctgca 1201 gcaggaaggg gaacggatcc gcagtgtctt ggatgggcct gtgctgagca acatcgaccg 1261 tattggagca gaccatgtgc agagccttct cctgaaacac tgtgccccag tactggccaa 1321 gctgcgccct ccacctgaca atcaggatgc ctaccgggga gaatttgggt cccttgggcc 1381 ccttctctgt tcccatgtgg tgaaggccag ggcccaggct gctctacaag ctcagcaggt 1441 caacaggacc acactcacca tcacacagcc tcggcccaca ctgacccttt cacaggcccc 1501 tcagccaggc cctcgcacgc ctggcttatt gaaggtccct ggctccattg ccttgcctgt 1561 tcagacactg gtgtctgcga gagctgctgc tcctcctcag ccttctcctc ctccaaccaa 1621 gtttattgta atgtcctcat cttccagtgc ctcatcaacc cagcaggttc tgtccctcag 1681 cacctcagct cctggctcag gctctactac tacctctcct gtcaccacca cggttcccag 1741 cgtgcagccc atcgtcaagc tggtctccac tgctaccact gcacccccaa gcacagcccc 1801 tgctggttct ggcagtgttc agaaatacat tgtggtctct cttcccccaa caggggaagg 1861 caaaggaggc cctccttctc atccttctcc agtcccccct tcatcttctt caccatcccc 1921 acttggggga agtaccctct gtggggggaa gcaggaagct ggggacagcc cccctccagc 1981 tccagggact ccaaaggcta atggctcgca gcctactgga cctggctctc cccagcctgc 2041 tctgtgatgt gtcacatgtg ctgacctcct ctcttgtgca gattcctaca cactcaaaca 2101 acctgtgagg gaggaaggag gaaaggtttt ccccagtgac tttcttttta gatattgtac 2161 agtaagttcc tcagaataaa agttggattt gt // gff2aplot-2.0.orig/examples/wublast/taf6.mmhs.genomic.blastn.full.gff0000664000000000000000000001022707667662610025611 0ustar rootroot00000000000000NM_009315 BLASTN hsp 5219 5832 1405 + . Target "NM_005641"; Start 11597; End 12218; Strand +; Frame .; NM_009315 BLASTN hsp 1719 2099 1122 + . Target "NM_005641"; Start 7067; End 7448; Strand +; Frame .; NM_009315 BLASTN hsp 664 1262 944 + . Target "NM_005641"; Start 5482; End 6065; Strand +; Frame .; NM_009315 BLASTN hsp 4851 5137 848 + . Target "NM_005641"; Start 11198; End 11485; Strand +; Frame .; NM_009315 BLASTN hsp 2375 2778 834 + . Target "NM_005641"; Start 8002; End 8402; Strand +; Frame .; NM_009315 BLASTN hsp 3109 3832 831 + . Target "NM_005641"; Start 8902; End 9636; Strand +; Frame .; NM_009315 BLASTN hsp 4535 4738 741 + . Target "NM_005641"; Start 10806; End 11009; Strand +; Frame .; NM_009315 BLASTN hsp 1239 1462 724 + . Target "NM_005641"; Start 6393; End 6618; Strand +; Frame .; NM_009315 BLASTN hsp 1 292 691 + . Target "NM_005641"; Start 5138; End 5426; Strand +; Frame .; NM_009315 BLASTN hsp 2116 2390 654 + . Target "NM_005641"; Start 7444; End 7714; Strand +; Frame .; NM_009315 BLASTN hsp 550 675 460 + . Target "NM_005641"; Start 5378; End 5504; Strand +; Frame .; NM_009315 BLASTN hsp 5558 5878 357 + . Target "NM_005641"; Start 11954; End 12278; Strand +; Frame .; NM_009315 BLASTN hsp 3086 3175 253 + . Target "NM_005641"; Start 6827; End 6924; Strand +; Frame .; NM_009315 BLASTN hsp 3079 3192 252 + . Target "NM_005641"; Start 1490; End 1610; Strand +; Frame .; NM_009315 BLASTN hsp 3058 3177 212 + . Target "NM_005641"; Start 10064; End 10180; Strand +; Frame .; NM_009315 BLASTN hsp 3083 3204 205 + . Target "NM_005641"; Start 3564; End 3694; Strand +; Frame .; NM_009315 BLASTN hsp 3056 3172 204 + . Target "NM_005641"; Start 3724; End 3837; Strand +; Frame .; NM_009315 BLASTN hsp 3061 3172 200 + . Target "NM_005641"; Start 3416; End 3528; Strand +; Frame .; NM_009315 BLASTN hsp 3114 3172 195 + . Target "NM_005641"; Start 2801; End 2860; Strand +; Frame .; NM_009315 BLASTN hsp 3028 3190 179 + . Target "NM_005641"; Start 10323; End 10493; Strand +; Frame .; NM_009315 BLASTN hsp 3104 3175 178 + . Target "NM_005641"; Start 8752; End 8825; Strand +; Frame .; NM_009315 BLASTN hsp 3114 3172 177 + . Target "NM_005641"; Start 2194; End 2253; Strand +; Frame .; NM_009315 BLASTN hsp 3111 3177 177 + . Target "NM_005641"; Start 1390; End 1461; Strand +; Frame .; NM_009315 BLASTN hsp 2757 2926 172 + . Target "NM_005641"; Start 6007; End 6180; Strand +; Frame .; NM_009315 BLASTN hsp 2769 2855 170 + . Target "NM_005641"; Start 9981; End 10063; Strand +; Frame .; NM_009315 BLASTN hsp 3118 3192 169 + . Target "NM_005641"; Start 8633; End 8708; Strand +; Frame .; NM_009315 BLASTN hsp 3109 3172 165 + . Target "NM_005641"; Start 10246; End 10311; Strand +; Frame .; NM_009315 BLASTN hsp 2710 3013 164 + . Target "NM_005641"; Start 10244; End 10543; Strand +; Frame .; NM_009315 BLASTN hsp 3111 3190 164 + . Target "NM_005641"; Start 913; End 994; Strand +; Frame .; NM_009315 BLASTN hsp 2728 3006 156 + . Target "NM_005641"; Start 929; End 1212; Strand +; Frame .; NM_009315 BLASTN hsp 2788 2855 151 + . Target "NM_005641"; Start 6612; End 6673; Strand +; Frame .; NM_009315 BLASTN hsp 3118 3167 150 + . Target "NM_005641"; Start 6314; End 6364; Strand +; Frame .; NM_009315 BLASTN hsp 357 463 150 + . Target "NM_005641"; Start 1748; End 1853; Strand +; Frame .; NM_009315 BLASTN hsp 3082 3156 149 + . Target "NM_005641"; Start 10512; End 10581; Strand +; Frame .; NM_009315 BLASTN hsp 2710 2804 149 + . Target "NM_005641"; Start 4552; End 4647; Strand +; Frame .; NM_009315 BLASTN hsp 2791 2855 142 + . Target "NM_005641"; Start 1283; End 1342; Strand +; Frame .; NM_009315 BLASTN hsp 2797 2842 140 + . Target "NM_005641"; Start 3670; End 3715; Strand +; Frame .; NM_009315 BLASTN hsp 2727 2911 139 + . Target "NM_005641"; Start 605; End 791; Strand +; Frame .; NM_009315 BLASTN hsp 2804 2863 137 + . Target "NM_005641"; Start 8525; End 8585; Strand +; Frame .; NM_009315 BLASTN hsp 399 453 132 + . Target "NM_005641"; Start 9592; End 9647; Strand +; Frame .; NM_009315 BLASTN hsp 2811 2950 128 + . Target "NM_005641"; Start 8839; End 8979; Strand +; Frame .; NM_009315 BLASTN hsp 2783 3006 127 + . Target "NM_005641"; Start 1290; End 1523; Strand +; Frame .; gff2aplot-2.0.orig/examples/wublast/taf6.tblastx.rc0000664000000000000000000000111407667662610022320 0ustar rootroot00000000000000# # L # percent_box_label=SIMILARITY percent_box_label_fontsize=10pt percent_box_score_range=0..1000 major_tickmark_score=250 ribbon_color_merge=on color_merge_factor=2 # group_y_label_angle=315 # # G # /.*M.musculus.*/::group_label=taf6 (M.musculus) /.*H.sapiens.*/::group_label=taf6 (H.sapiens) # # F # /[it].*exon/::feature_color=darkred utrexon::feature_color=lightgrey initialexon::feature_shape=half_arrow_end terminalexon::feature_shape=half_arrow /.*exon/::show_ribbons=on /.*exon/::ribbon_style=ribbons /[it].*exon/::ribbon_color=verylightred utrexon::ribbon_color=verylightgrey gff2aplot-2.0.orig/examples/wublast/taf6.mmhs.genomic.tblastx.aplot.gff0000664000000000000000000003305307667662610026166 0ustar rootroot00000000000000NM_009315:NM_005641 TBLASTX hsp 4867:11212 5778:12162 839 +:+ .:. 300.4:1 NM_009315:NM_005641 TBLASTX hsp 4874:11219 5785:12151 645 +:+ .:. 232.1:2 NM_009315:NM_005641 TBLASTX hsp 2379:8006 2621:8248 344 +:+ .:. 126.2:3 NM_009315:NM_005641 TBLASTX hsp 673:5471 1017:5833 321 +:+ .:. 118.1:4 NM_009315:NM_005641 TBLASTX hsp 4519:10778 4773:11065 315 +:+ .:. 115.9:5 NM_009315:NM_005641 TBLASTX hsp 1719:7067 1913:7261 285 +:+ .:. 105.4:6 NM_009315:NM_005641 TBLASTX hsp 2:5139 172:5309 262 +:+ .:. 97.3:7 NM_009315:NM_005641 TBLASTX hsp 1212:6373 1409:6564 252 +:+ .:. 93.8:8 NM_009315:NM_005641 TBLASTX hsp 762:5572 1061:5880 252 +:+ .:. 93.8:9 NM_009315:NM_005641 TBLASTX hsp 3432:9233 3638:9439 247 +:+ .:. 92.0:10 NM_009315:NM_005641 TBLASTX hsp 2378:8005 2605:8232 227 +:+ .:. 85.0:11 NM_009315:NM_005641 TBLASTX hsp 3140:8935 3613:9414 194 +:+ .:. 73.4:12 NM_009315:NM_005641 TBLASTX hsp 2116:7444 2373:7698 190 +:+ .:. 71.9:13 NM_009315:NM_005641 TBLASTX hsp 6:5143 173:5310 188 +:+ .:. 71.2:14 NM_009315:NM_005641 TBLASTX hsp 505:5322 738:5579 187 +:+ .:. 70.9:15 NM_009315:NM_005641 TBLASTX hsp 7:5144 174:5311 184 +:+ .:. 69.8:16 NM_009315:NM_005641 TBLASTX hsp 1228:6368 1458:6613 178 +:+ .:. 67.7:17 NM_009315:NM_005641 TBLASTX hsp 1906:7265 2100:7450 159 +:+ .:. 61.0:18 NM_009315:NM_005641 TBLASTX hsp 1980:7329 2348:7676 159 +:+ .:. 61.0:19 NM_009315:NM_005641 TBLASTX hsp 1941:7288 2126:7482 136 +:+ .:. 52.9:20 NM_009315:NM_005641 TBLASTX hsp 1104:5927 1226:6040 135 +:+ .:. 52.6:21 NM_009315:NM_005641 TBLASTX hsp 5612:12030 5878:12278 94 +:+ .:. 38.1:22 NM_009315:NM_005641 TBLASTX hsp 2791:676 2877:744 73 +:+ .:. 30.8:23 NM_009315:NM_005641 TBLASTX hsp 3083:10044 3175:10178 71 +:+ .:. 30.1:24 NM_009315:NM_005641 TBLASTX hsp 2773:1278 2880:1358 71 +:+ .:. 30.1:25 NM_009315:NM_005641 TBLASTX hsp 683:3408 787:3518 65 +:+ .:. 27.9:26 NM_009315:NM_005641 TBLASTX hsp 3503:11672 3724:11920 63 +:+ .:. 27.2:27 NM_009315:NM_005641 TBLASTX hsp 405:1930 464:1989 61 +:+ .:. 26.5:28 NM_009315:NM_005641 TBLASTX hsp 2790:6614 3026:6844 61 +:+ .:. 26.5:29 NM_009315:NM_005641 TBLASTX hsp 4895:11942 5158:12223 60 +:+ .:. 26.2:30 NM_009315:NM_005641 TBLASTX hsp 4041:6339 4097:6395 60 +:+ .:. 26.2:31 NM_009315:NM_005641 TBLASTX hsp 2785:10005 2850:10058 59 +:+ .:. 25.8:32 NM_009315:NM_005641 TBLASTX hsp 686:6667 784:6771 59 +:+ .:. 25.8:33 NM_009315:NM_005641 TBLASTX hsp 3121:6873 3186:6935 59 +:+ .:. 25.8:34 NM_009315:NM_005641 TBLASTX hsp 3028:3684 3171:3836 59 +:+ .:. 25.8:35 NM_009315:NM_005641 TBLASTX hsp 3123:2946 3182:3005 59 +:+ .:. 25.8:36 NM_009315:NM_005641 TBLASTX hsp 304:9309 519:9518 55 +:+ .:. 24.4:37 NM_009315:NM_005641 TBLASTX hsp 4041:10281 4100:10340 54 +:+ .:. 24.1:38 NM_009315:NM_005641 TBLASTX hsp 4047:8664 4109:8726 54 +:+ .:. 24.1:39 NM_009315:NM_005641 TBLASTX hsp 3031:10322 3174:10477 53 +:+ .:. 23.7:40 NM_009315:NM_005641 TBLASTX hsp 686:3720 772:3812 53 +:+ .:. 23.7:41 NM_009315:NM_005641 TBLASTX hsp 2770:6603 2850:6668 53 +:+ .:. 23.7:42 NM_009315:NM_005641 TBLASTX hsp 3136:1110 3177:1151 53 +:+ .:. 23.7:43 NM_009315:NM_005641 TBLASTX hsp 4579:8188 4647:8256 52 +:+ .:. 23.4:44 NM_009315:NM_005641 TBLASTX hsp 3028:685 3141:810 52 +:+ .:. 23.4:45 NM_009315:NM_005641 TBLASTX hsp 2804:8525 2836:8557 51 +:+ .:. 23.0:46 NM_009315:NM_005641 TBLASTX hsp 3095:10407 3175:10478 51 +:+ .:. 23.0:47 NM_009315:NM_005641 TBLASTX hsp 4002:4547 4097:4645 51 +:+ .:. 23.0:48 NM_009315:NM_005641 TBLASTX hsp 4166:7241 4249:7333 50 +:+ .:. 22.7:49 NM_009315:NM_005641 TBLASTX hsp 5536:11141 5694:11311 50 +:+ .:. 22.7:50 NM_009315:NM_005641 TBLASTX hsp 555:7342 608:7392 50 +:+ .:. 22.7:51 NM_009315:NM_005641 TBLASTX hsp 405:7849 464:7908 50 +:+ .:. 22.7:52 NM_009315:NM_005641 TBLASTX hsp 1447:6928 1500:6978 49 +:+ .:. 22.3:53 NM_009315:NM_005641 TBLASTX hsp 2916:10443 3011:10541 49 +:+ .:. 22.3:54 NM_009315:NM_005641 TBLASTX hsp 931:5746 1125:5943 49 +:+ .:. 22.3:55 NM_009315:NM_005641 TBLASTX hsp 1501:7763 1587:7849 49 +:+ .:. 22.3:56 NM_009315:NM_005641 TBLASTX hsp 3028:1465 3168:1587 49 +:+ .:. 22.3:57 NM_009315:NM_005641 TBLASTX hsp 3121:6321 3168:6365 48 +:+ .:. 22.0:58 NM_009315:NM_005641 TBLASTX hsp 2792:3674 2842:3715 48 +:+ .:. 22.0:59 NM_009315:NM_005641 TBLASTX hsp 3083:4520 3139:4585 48 +:+ .:. 22.0:60 NM_009315:NM_005641 TBLASTX hsp 4029:2821 4091:2880 48 +:+ .:. 22.0:61 NM_009315:NM_005641 TBLASTX hsp 2913:8482 2969:8538 47 +:+ .:. 21.6:62 NM_009315:NM_005641 TBLASTX hsp 3118:10544 3150:10576 47 +:+ .:. 21.6:63 NM_009315:NM_005641 TBLASTX hsp 4047:8493 4097:8543 47 +:+ .:. 21.6:64 NM_009315:NM_005641 TBLASTX hsp 689:4665 784:4766 47 +:+ .:. 21.6:65 NM_009315:NM_005641 TBLASTX hsp 3086:6827 3115:6856 47 +:+ .:. 21.6:66 NM_009315:NM_005641 TBLASTX hsp 3083:6654 3121:6692 47 +:+ .:. 21.6:67 NM_009315:NM_005641 TBLASTX hsp 3056:2989 3211:3156 47 +:+ .:. 21.6:68 NM_009315:NM_005641 TBLASTX hsp 3136:10275 3168:10307 46 +:+ .:. 21.3:69 NM_009315:NM_005641 TBLASTX hsp 408:1798 476:1866 46 +:+ .:. 21.3:70 NM_009315:NM_005641 TBLASTX hsp 4888:10422 4950:10484 46 +:+ .:. 21.3:71 NM_009315:NM_005641 TBLASTX hsp 546:3051 590:3086 46 +:+ .:. 21.3:72 NM_009315:NM_005641 TBLASTX hsp 2806:6047 2844:6094 46 +:+ .:. 21.3:73 NM_009315:NM_005641 TBLASTX hsp 5758:10842 5823:10907 46 +:+ .:. 21.3:74 NM_009315:NM_005641 TBLASTX hsp 2794:3670 2871:3747 46 +:+ .:. 21.3:75 NM_009315:NM_005641 TBLASTX hsp 3621:4612 3713:4704 46 +:+ .:. 21.3:76 NM_009315:NM_005641 TBLASTX hsp 1143:8580 1187:8624 45 +:+ .:. 20.9:77 NM_009315:NM_005641 TBLASTX hsp 3029:1299 3121:1361 45 +:+ .:. 20.9:78 NM_009315:NM_005641 TBLASTX hsp 4047:3813 4091:3857 45 +:+ .:. 20.9:79 NM_009315:NM_005641 TBLASTX hsp 4233:2166 4304:2240 45 +:+ .:. 20.9:80 NM_009315:NM_005641 TBLASTX hsp 4353:2071 4457:2172 45 +:+ .:. 20.9:81 NM_009315:NM_005641 TBLASTX hsp 3817:9908 3882:9973 44 +:+ .:. 20.5:82 NM_009315:NM_005641 TBLASTX hsp 3012:8506 3152:8667 44 +:+ .:. 20.5:83 NM_009315:NM_005641 TBLASTX hsp 3144:10447 3176:10479 44 +:+ .:. 20.5:84 NM_009315:NM_005641 TBLASTX hsp 5430:9313 5534:9423 44 +:+ .:. 20.5:85 NM_009315:NM_005641 TBLASTX hsp 4655:6495 4735:6575 44 +:+ .:. 20.5:86 NM_009315:NM_005641 TBLASTX hsp 3793:5563 3849:5619 44 +:+ .:. 20.5:87 NM_009315:NM_005641 TBLASTX hsp 3118:3610 3165:3654 44 +:+ .:. 20.5:88 NM_009315:NM_005641 TBLASTX hsp 3083:1017 3166:1100 44 +:+ .:. 20.5:89 NM_009315:NM_005641 TBLASTX hsp 5625:5493 5684:5552 44 +:+ .:. 20.5:90 NM_009315:NM_005641 TBLASTX hsp 3138:8788 3176:8826 43 +:+ .:. 20.2:91 NM_009315:NM_005641 TBLASTX hsp 3654:9429 3728:9503 43 +:+ .:. 20.2:92 NM_009315:NM_005641 TBLASTX hsp 405:4206 476:4277 43 +:+ .:. 20.2:93 NM_009315:NM_005641 TBLASTX hsp 856:6448 978:6570 43 +:+ .:. 20.2:94 NM_009315:NM_005641 TBLASTX hsp 1600:4298 1629:4327 43 +:+ .:. 20.2:95 NM_009315:NM_005641 TBLASTX hsp 5434:10718 5481:10765 43 +:+ .:. 20.2:96 NM_009315:NM_005641 TBLASTX hsp 3075:11897 3125:11947 43 +:+ .:. 20.2:97 NM_009315:NM_005641 TBLASTX hsp 2978:3874 3019:3915 43 +:+ .:. 20.2:98 NM_009315:NM_005641 TBLASTX hsp 4041:1561 4091:1608 43 +:+ .:. 20.2:99 NM_009315:NM_005641 TBLASTX hsp 4866:11211 5786:12152 772 -:- .:. 276.8:100 NM_009315:NM_005641 TBLASTX hsp 2258:7852 2611:8238 309 -:- .:. 113.8:101 NM_009315:NM_005641 TBLASTX hsp 762:5572 1058:5877 293 -:- .:. 108.2:102 NM_009315:NM_005641 TBLASTX hsp 4518:10777 4721:10992 290 -:- .:. 107.1:103 NM_009315:NM_005641 TBLASTX hsp 1718:7066 1912:7260 261 -:- .:. 96.9:104 NM_009315:NM_005641 TBLASTX hsp 3392:9172 3643:9441 250 -:- .:. 93.1:105 NM_009315:NM_005641 TBLASTX hsp 4:5141 174:5311 236 -:- .:. 88.1:106 NM_009315:NM_005641 TBLASTX hsp 1259:6414 1408:6563 235 -:- .:. 87.8:107 NM_009315:NM_005641 TBLASTX hsp 2116:7444 2349:7677 209 -:- .:. 78.6:108 NM_009315:NM_005641 TBLASTX hsp 3:5140 173:5310 192 -:- .:. 72.6:109 NM_009315:NM_005641 TBLASTX hsp 2:5139 172:5309 190 -:- .:. 71.9:110 NM_009315:NM_005641 TBLASTX hsp 2112:7440 2345:7673 166 -:- .:. 63.5:111 NM_009315:NM_005641 TBLASTX hsp 1998:7348 2099:7449 148 -:- .:. 57.2:112 NM_009315:NM_005641 TBLASTX hsp 3291:9067 3386:9162 137 -:- .:. 53.3:113 NM_009315:NM_005641 TBLASTX hsp 554:5386 769:5583 135 -:- .:. 52.6:114 NM_009315:NM_005641 TBLASTX hsp 1118:5941 1225:6039 125 -:- .:. 49.1:115 NM_009315:NM_005641 TBLASTX hsp 5705:12081 5878:12278 83 -:- .:. 34.3:116 NM_009315:NM_005641 TBLASTX hsp 5677:12065 5877:12277 76 -:- .:. 31.8:117 NM_009315:NM_005641 TBLASTX hsp 3036:6791 3185:6934 73 -:- .:. 30.8:118 NM_009315:NM_005641 TBLASTX hsp 3030:6242 3167:6364 67 -:- .:. 28.6:119 NM_009315:NM_005641 TBLASTX hsp 930:5745 1091:5909 66 -:- .:. 28.3:120 NM_009315:NM_005641 TBLASTX hsp 3052:10013 3177:10180 65 -:- .:. 27.9:121 NM_009315:NM_005641 TBLASTX hsp 4035:2824 4103:2886 65 -:- .:. 27.9:122 NM_009315:NM_005641 TBLASTX hsp 2978:2639 3142:2797 64 -:- .:. 27.6:123 NM_009315:NM_005641 TBLASTX hsp 3139:1113 3177:1151 61 -:- .:. 26.5:124 NM_009315:NM_005641 TBLASTX hsp 3915:8367 4103:8549 60 -:- .:. 26.2:125 NM_009315:NM_005641 TBLASTX hsp 2999:686 3148:817 60 -:- .:. 26.2:126 NM_009315:NM_005641 TBLASTX hsp 3136:10439 3180:10483 59 -:- .:. 25.8:127 NM_009315:NM_005641 TBLASTX hsp 3089:884 3190:994 58 -:- .:. 25.5:128 NM_009315:NM_005641 TBLASTX hsp 4041:10281 4103:10340 57 -:- .:. 25.1:129 NM_009315:NM_005641 TBLASTX hsp 2769:5032 2870:5118 57 -:- .:. 25.1:130 NM_009315:NM_005641 TBLASTX hsp 4041:3807 4103:3863 57 -:- .:. 25.1:131 NM_009315:NM_005641 TBLASTX hsp 3121:1405 3177:1461 56 -:- .:. 24.8:132 NM_009315:NM_005641 TBLASTX hsp 638:10988 715:11065 56 -:- .:. 24.8:133 NM_009315:NM_005641 TBLASTX hsp 3115:6849 3186:6935 55 -:- .:. 24.4:134 NM_009315:NM_005641 TBLASTX hsp 3089:4821 3166:4907 55 -:- .:. 24.4:135 NM_009315:NM_005641 TBLASTX hsp 399:1789 542:1911 54 -:- .:. 24.1:136 NM_009315:NM_005641 TBLASTX hsp 2789:1282 2944:1452 54 -:- .:. 24.1:137 NM_009315:NM_005641 TBLASTX hsp 3041:2112 3163:2240 54 -:- .:. 24.1:138 NM_009315:NM_005641 TBLASTX hsp 5574:11203 5693:11310 53 -:- .:. 23.7:139 NM_009315:NM_005641 TBLASTX hsp 2728:4572 3000:4838 53 -:- .:. 23.7:140 NM_009315:NM_005641 TBLASTX hsp 2986:3493 3189:3678 53 -:- .:. 23.7:141 NM_009315:NM_005641 TBLASTX hsp 399:9591 503:9707 53 -:- .:. 23.7:142 NM_009315:NM_005641 TBLASTX hsp 405:1930 467:1992 52 -:- .:. 23.4:143 NM_009315:NM_005641 TBLASTX hsp 2785:2692 3006:2925 52 -:- .:. 23.4:144 NM_009315:NM_005641 TBLASTX hsp 3142:3807 3171:3836 52 -:- .:. 23.4:145 NM_009315:NM_005641 TBLASTX hsp 3139:1558 3195:1614 52 -:- .:. 23.4:146 NM_009315:NM_005641 TBLASTX hsp 224:298 295:369 51 -:- .:. 23.0:147 NM_009315:NM_005641 TBLASTX hsp 2784:10004 2855:10063 51 -:- .:. 23.0:148 NM_009315:NM_005641 TBLASTX hsp 2787:6611 2855:6673 51 -:- .:. 23.0:149 NM_009315:NM_005641 TBLASTX hsp 3135:1109 3176:1150 51 -:- .:. 23.0:150 NM_009315:NM_005641 TBLASTX hsp 3032:8535 3148:8663 50 -:- .:. 22.7:151 NM_009315:NM_005641 TBLASTX hsp 3918:8541 4088:8705 50 -:- .:. 22.7:152 NM_009315:NM_005641 TBLASTX hsp 3122:2945 3190:3013 50 -:- .:. 22.7:153 NM_009315:NM_005641 TBLASTX hsp 3577:3545 3663:3634 50 -:- .:. 22.7:154 NM_009315:NM_005641 TBLASTX hsp 2659:5924 2865:6115 49 -:- .:. 22.3:155 NM_009315:NM_005641 TBLASTX hsp 3121:3480 3171:3527 49 -:- .:. 22.3:156 NM_009315:NM_005641 TBLASTX hsp 3118:2809 3171:2859 49 -:- .:. 22.3:157 NM_009315:NM_005641 TBLASTX hsp 399:4200 521:4301 48 -:- .:. 22.0:158 NM_009315:NM_005641 TBLASTX hsp 3135:10438 3173:10476 48 -:- .:. 22.0:159 NM_009315:NM_005641 TBLASTX hsp 2905:6192 3006:6299 48 -:- .:. 22.0:160 NM_009315:NM_005641 TBLASTX hsp 4020:2202 4103:2279 48 -:- .:. 22.0:161 NM_009315:NM_005641 TBLASTX hsp 3139:10278 3189:10328 47 -:- .:. 21.6:162 NM_009315:NM_005641 TBLASTX hsp 1973:1531 2083:1635 47 -:- .:. 21.6:163 NM_009315:NM_005641 TBLASTX hsp 4043:3809 4114:3883 47 -:- .:. 21.6:164 NM_009315:NM_005641 TBLASTX hsp 4227:10701 4262:10736 46 -:- .:. 21.3:165 NM_009315:NM_005641 TBLASTX hsp 3142:8487 3177:8522 46 -:- .:. 21.3:166 NM_009315:NM_005641 TBLASTX hsp 2915:10442 2968:10495 46 -:- .:. 21.3:167 NM_009315:NM_005641 TBLASTX hsp 3577:10736 3639:10804 46 -:- .:. 21.3:168 NM_009315:NM_005641 TBLASTX hsp 3077:6691 3163:6771 46 -:- .:. 21.3:169 NM_009315:NM_005641 TBLASTX hsp 1179:7256 1295:7369 46 -:- .:. 21.3:170 NM_009315:NM_005641 TBLASTX hsp 4040:6338 4096:6394 46 -:- .:. 21.3:171 NM_009315:NM_005641 TBLASTX hsp 2915:3495 2968:3548 46 -:- .:. 21.3:172 NM_009315:NM_005641 TBLASTX hsp 903:41 1046:181 45 -:- .:. 20.9:173 NM_009315:NM_005641 TBLASTX hsp 1882:9717 1920:9755 45 -:- .:. 20.9:174 NM_009315:NM_005641 TBLASTX hsp 2138:207 2248:329 45 -:- .:. 20.9:175 NM_009315:NM_005641 TBLASTX hsp 4556:6331 4660:6435 45 -:- .:. 20.9:176 NM_009315:NM_005641 TBLASTX hsp 2802:3675 2915:3797 45 -:- .:. 20.9:177 NM_009315:NM_005641 TBLASTX hsp 4041:812 4067:838 45 -:- .:. 20.9:178 NM_009315:NM_005641 TBLASTX hsp 3104:10530 3148:10574 44 -:- .:. 20.5:179 NM_009315:NM_005641 TBLASTX hsp 949:6325 984:6360 44 -:- .:. 20.5:180 NM_009315:NM_005641 TBLASTX hsp 2110:12002 2166:12058 44 -:- .:. 20.5:181 NM_009315:NM_005641 TBLASTX hsp 4348:2060 4377:2089 44 -:- .:. 20.5:182 NM_009315:NM_005641 TBLASTX hsp 3140:8790 3181:8831 43 -:- .:. 20.2:183 NM_009315:NM_005641 TBLASTX hsp 4529:10185 4606:10262 43 -:- .:. 20.2:184 NM_009315:NM_005641 TBLASTX hsp 1189:6370 1383:6537 43 -:- .:. 20.2:185 NM_009315:NM_005641 TBLASTX hsp 3119:4864 3193:4938 43 -:- .:. 20.2:186 NM_009315:NM_005641 TBLASTX hsp 3120:1542 3167:1586 43 -:- .:. 20.2:187 NM_009315:NM_005641 TBLASTX hsp 632:9145 706:9219 43 -:- .:. 20.2:188 NM_009315:NM_005641 TBLASTX hsp 4355:2069 4378:2092 43 -:- .:. 20.2:189 NM_009315:NM_005641 TBLASTX hsp 4352:2070 4402:2120 43 -:- .:. 20.2:190 NM_009315:NM_005641 TBLASTX hsp 4639:3306 4668:3335 43 -:- .:. 20.2:191 gff2aplot-2.0.orig/examples/wublast/README0000664000000000000000000002012307667662610020333 0ustar rootroot00000000000000################################################## # # README wublast # # This README runs as a shell script. # Here you can find the commands # we used to produce all the figures for: # # "WU-BLAST Analysis of two Homologous Genes" # # USAGE: bash README > .log 2>&1 # # $Id: README,v 1.1 2003/03/04 18:55:02 jabril Exp $ # ################################################## # # Original Files # # ANNOTATION: taf6.hs.gene.gff taf6.mm.gene.gff # ALIGNMENT: taf6.mmhs.genomic.blastn taf6.mmhs.genomic.tblastx # # echo "# -> Running parseblast: BLAST -> GFF" ; # $BIN/parseblast.pl --verbose --no-frame --aplot \ -- taf6.mmhs.genomic.blastn \ > taf6.mmhs.genomic.blastn.aplot.gff \ 2> taf6.mmhs.genomic.blastn.aplotgff.log ; # $BIN/parseblast.pl --verbose --no-frame \ --fullgff --compact-tags \ -- taf6.mmhs.genomic.blastn \ > taf6.mmhs.genomic.blastn.gff \ 2> taf6.mmhs.genomic.blastn.log ; # $BIN/parseblast.pl --verbose --no-frame --fullgff \ -- taf6.mmhs.genomic.blastn \ > taf6.mmhs.genomic.blastn.full.gff \ 2> taf6.mmhs.genomic.blastn.full.log ; # $BIN/parseblast.pl --verbose --no-frame --aplot \ -- taf6.mmhs.genomic.tblastx \ > taf6.mmhs.genomic.tblastx.aplot.gff \ 2> taf6.mmhs.genomic.tblastx.aplotgff.log ; # $BIN/parseblast.pl --verbose --no-frame --fullgff \ -- taf6.mmhs.genomic.tblastx \ > taf6.mmhs.genomic.tblastx.gff \ 2> taf6.mmhs.genomic.tblastx.log ; # echo "# -> Running gff2aplot: GFF -> PS" ; # $BIN/gff2aplot.pl \ --verbose \ -- taf6.mmhs.genomic.blastn.gff \ taf6.mm.gene.gff \ taf6.hs.gene.gff \ > taf6.mmhs.genomic.blastn.ps \ 2> taf6.mmhs.genomic.blastn.log ; # $BIN/gff2aplot.pl \ --verbose \ -- taf6.mmhs.genomic.blastn.aplot.gff \ taf6.mm.gene.gff \ taf6.hs.gene.gff \ > taf6.mmhs.genomic.blastn.aplot.ps \ 2> taf6.mmhs.genomic.blastn.aplot.log ; # $BIN/gff2aplot.pl \ --verbose \ --show-percent-box \ -- taf6.mmhs.genomic.tblastx.gff \ taf6.mm.gene.gff \ taf6.hs.gene.gff \ > taf6.mmhs.genomic.tblastx.ps \ 2> taf6.mmhs.genomic.tblastx.log ; # $BIN/gff2aplot.pl \ --verbose \ --show-percent-box \ -- taf6.mmhs.genomic.tblastx.aplot.gff \ taf6.mm.gene.gff \ taf6.hs.gene.gff \ > taf6.mmhs.genomic.tblastx.aplot.ps \ 2> taf6.mmhs.genomic.tblastx.aplot.log ; # Extra customization cat > taf6.tblastx.rc <<'+++EOF+++' # # L # percent_box_label=SIMILARITY percent_box_label_fontsize=10pt percent_box_score_range=0..1000 major_tickmark_score=250 ribbon_color_merge=on color_merge_factor=2 # group_y_label_angle=315 # # G # /.*M.musculus.*/::group_label=taf6 (M.musculus) /.*H.sapiens.*/::group_label=taf6 (H.sapiens) # # F # /[it].*exon/::feature_color=darkred utrexon::feature_color=lightgrey initialexon::feature_shape=half_arrow_end terminalexon::feature_shape=half_arrow /.*exon/::show_ribbons=on /.*exon/::ribbon_style=ribbons /[it].*exon/::ribbon_color=verylightred utrexon::ribbon_color=verylightgrey +++EOF+++ # echo "# -> Running gff2aplot + customization" ; # $BIN/gff2aplot.pl \ --verbose \ --title 'Hsap/Mmus taf6 Orthologous Gene' \ --subtitle 'Figure displays BLASTN results for this genomic region.' \ --show-percent-box \ --custom-filename taf6.tblastx.rc \ -- taf6.mmhs.genomic.blastn.aplot.gff \ taf6.mm.gene.gff \ taf6.hs.gene.gff \ > taf6.mmhs.genomic.blastn.aplot_conf.ps \ 2> taf6.mmhs.genomic.blastn.aplot_conf.log ; # $BIN/gff2aplot.pl \ --verbose \ --title 'Hsap/Mmus taf6 Orthologous Gene' \ --subtitle 'Figure displays TBLASTX results for this genomic region.' \ --show-percent-box \ --custom-filename taf6.tblastx.rc \ -- taf6.mmhs.genomic.tblastx.aplot.gff \ taf6.mm.gene.gff \ taf6.hs.gene.gff \ > taf6.mmhs.genomic.tblastx.aplot_conf.ps \ 2> taf6.mmhs.genomic.tblastx.aplot_conf.log ; # echo "# -> Merging data..." ; # $BIN/gff2aplot.pl \ --verbose \ --title 'Hsap/Mmus taf6 Orthologous Gene' \ --subtitle 'Merging BLASTN and TBLASTX alignments.' \ --show-percent-box \ --custom-filename taf6.tblastx.rc \ -- taf6.mmhs.genomic.blastn.aplot.gff \ taf6.mmhs.genomic.tblastx.aplot.gff \ taf6.mm.gene.gff \ taf6.hs.gene.gff \ > taf6.mmhs.genomic.blast.merge.ps \ 2> taf6.mmhs.genomic.blast.merge.log ; # $BIN/gff2aplot.pl \ --verbose \ --title 'Hsap/Mmus taf6 Orthologous Gene' \ --subtitle 'BLASTN alignments shown in green, TBLASTX results in blue.' \ --show-percent-box \ --custom-filename taf6.tblastx.rc \ --source-var 'BLASTN::alignment_color=darkgreen' \ --source-var 'TBLASTX::alignment_color=darkblue' \ -- taf6.mmhs.genomic.blastn.aplot.gff \ taf6.mmhs.genomic.tblastx.aplot.gff \ taf6.mm.gene.gff \ taf6.hs.gene.gff \ > taf6.mmhs.genomic.blast.merge_conf.ps \ 2> taf6.mmhs.genomic.blast.merge_conf.log ; # # # Preparing web images # filenames () { cat << 'EOF'; taf6.mmhs.genomic.blastn taf6.mmhs.genomic.tblastx taf6.mmhs.genomic.blastn.aplot taf6.mmhs.genomic.tblastx.aplot taf6.mmhs.genomic.blastn.aplot_conf taf6.mmhs.genomic.tblastx.aplot_conf taf6.mmhs.genomic.blast.merge taf6.mmhs.genomic.blast.merge_conf EOF }; # # echo "# Using \"ghostscript\" to obtain JPEG images from PS files" ; echo "# Using \"ghostscript\" to obtain PNG images from PS files" ; # GS=`which gs || echo "gs"`; MG=`which mogrify || echo "mogrify"`; CV=`which convert || echo "convert"`; # filenames | while read n ; do { echo "# -> $n" ; $GS -dBATCH -dNOPAUSE -r300 \ -sPAPERSIZE=a4 -sDEVICE=png16m \ -sOutputFile=$n.png $n.ps ; cp -v $n.png $n.s.png ; # mogrify is a ImageMagick tool that allow us to transform images on batch, # large high-resolution jpeg files are scaled down to thumbnail resolution (2479x3508=>123x175) # it overwrites original file (so that we previously get a renamed copy for each jpeg to process). $MG -verbose -geometry 5% $n.s.png ; # # $GS -dBATCH -dNOPAUSE -r300 \ # -sPAPERSIZE=a4 -sDEVICE=jpeg \ # -sOutputFile=$n.jpg $n.ps ; # png large version is pretty smaller than jpeg # cp -v $n.jpg $n.s.jpg ; # $MG -verbose -geometry 5% $n.s.jpg ; }; done ; $CV 'vid:*.s.png' wublast.summary.png # echo "# Using \"ghostscript\" to obtain PDF documents from PS files" ; # filenames | while read n ; do { echo "# -> $n" ; $GS -dBATCH -dNOPAUSE -r300 \ -sPAPERSIZE=a4 -sDEVICE=pdfwrite \ -sOutputFile=$n.pdf $n.ps ; }; done ; # # # echo "# LaTeXing all figures together..." ; # # latex wublast.tex; # dvips wublast.dvi -o wublast.ps; # # echo "###" ; echo "### TOTAL TIME: $SECONDS seconds..." ; # # # That's all folks... ;^D # # >> Copyleft (C) 2002/2003 - Josep F. Abril << # gff2aplot-2.0.orig/examples/wublast/taf6.mmhs.genomic.blastn.gff0000664000000000000000000000605107667662610024650 0ustar rootroot00000000000000NM_009315 BLASTN hsp 5219 5832 1405 + . Target "NM_005641" 11597 12218 + .; NM_009315 BLASTN hsp 1719 2099 1122 + . Target "NM_005641" 7067 7448 + .; NM_009315 BLASTN hsp 664 1262 944 + . Target "NM_005641" 5482 6065 + .; NM_009315 BLASTN hsp 4851 5137 848 + . Target "NM_005641" 11198 11485 + .; NM_009315 BLASTN hsp 2375 2778 834 + . Target "NM_005641" 8002 8402 + .; NM_009315 BLASTN hsp 3109 3832 831 + . Target "NM_005641" 8902 9636 + .; NM_009315 BLASTN hsp 4535 4738 741 + . Target "NM_005641" 10806 11009 + .; NM_009315 BLASTN hsp 1239 1462 724 + . Target "NM_005641" 6393 6618 + .; NM_009315 BLASTN hsp 1 292 691 + . Target "NM_005641" 5138 5426 + .; NM_009315 BLASTN hsp 2116 2390 654 + . Target "NM_005641" 7444 7714 + .; NM_009315 BLASTN hsp 550 675 460 + . Target "NM_005641" 5378 5504 + .; NM_009315 BLASTN hsp 5558 5878 357 + . Target "NM_005641" 11954 12278 + .; NM_009315 BLASTN hsp 3086 3175 253 + . Target "NM_005641" 6827 6924 + .; NM_009315 BLASTN hsp 3079 3192 252 + . Target "NM_005641" 1490 1610 + .; NM_009315 BLASTN hsp 3058 3177 212 + . Target "NM_005641" 10064 10180 + .; NM_009315 BLASTN hsp 3083 3204 205 + . Target "NM_005641" 3564 3694 + .; NM_009315 BLASTN hsp 3056 3172 204 + . Target "NM_005641" 3724 3837 + .; NM_009315 BLASTN hsp 3061 3172 200 + . Target "NM_005641" 3416 3528 + .; NM_009315 BLASTN hsp 3114 3172 195 + . Target "NM_005641" 2801 2860 + .; NM_009315 BLASTN hsp 3028 3190 179 + . Target "NM_005641" 10323 10493 + .; NM_009315 BLASTN hsp 3104 3175 178 + . Target "NM_005641" 8752 8825 + .; NM_009315 BLASTN hsp 3114 3172 177 + . Target "NM_005641" 2194 2253 + .; NM_009315 BLASTN hsp 3111 3177 177 + . Target "NM_005641" 1390 1461 + .; NM_009315 BLASTN hsp 2757 2926 172 + . Target "NM_005641" 6007 6180 + .; NM_009315 BLASTN hsp 2769 2855 170 + . Target "NM_005641" 9981 10063 + .; NM_009315 BLASTN hsp 3118 3192 169 + . Target "NM_005641" 8633 8708 + .; NM_009315 BLASTN hsp 3109 3172 165 + . Target "NM_005641" 10246 10311 + .; NM_009315 BLASTN hsp 2710 3013 164 + . Target "NM_005641" 10244 10543 + .; NM_009315 BLASTN hsp 3111 3190 164 + . Target "NM_005641" 913 994 + .; NM_009315 BLASTN hsp 2728 3006 156 + . Target "NM_005641" 929 1212 + .; NM_009315 BLASTN hsp 2788 2855 151 + . Target "NM_005641" 6612 6673 + .; NM_009315 BLASTN hsp 3118 3167 150 + . Target "NM_005641" 6314 6364 + .; NM_009315 BLASTN hsp 357 463 150 + . Target "NM_005641" 1748 1853 + .; NM_009315 BLASTN hsp 3082 3156 149 + . Target "NM_005641" 10512 10581 + .; NM_009315 BLASTN hsp 2710 2804 149 + . Target "NM_005641" 4552 4647 + .; NM_009315 BLASTN hsp 2791 2855 142 + . Target "NM_005641" 1283 1342 + .; NM_009315 BLASTN hsp 2797 2842 140 + . Target "NM_005641" 3670 3715 + .; NM_009315 BLASTN hsp 2727 2911 139 + . Target "NM_005641" 605 791 + .; NM_009315 BLASTN hsp 2804 2863 137 + . Target "NM_005641" 8525 8585 + .; NM_009315 BLASTN hsp 399 453 132 + . Target "NM_005641" 9592 9647 + .; NM_009315 BLASTN hsp 2811 2950 128 + . Target "NM_005641" 8839 8979 + .; NM_009315 BLASTN hsp 2783 3006 127 + . Target "NM_005641" 1290 1523 + .; gff2aplot-2.0.orig/examples/wublast/taf6.hs.gene.gb0000664000000000000000000002403407667662610022160 0ustar rootroot00000000000000LOCUS TAF6 2737 bp mRNA linear PRI 15-JAN-2003 DEFINITION Homo sapiens TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa (TAF6), transcript variant 1, mRNA. ACCESSION NM_005641 VERSION NM_005641.2 GI:21536360 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2737) AUTHORS Weinzierl,R.O., Ruppert,S., Dynlacht,B.D., Tanese,N. and Tjian,R. TITLE Cloning and expression of Drosophila TAFII60 and human TAFII70 reveal conserved interactions with other subunits of TFIID JOURNAL EMBO J. 12 (13), 5303-5309 (1993) MEDLINE 94085406 PUBMED 8262073 REFERENCE 2 (bases 1 to 2737) AUTHORS Hisatake,K., Ohta,T., Takada,R., Guermah,M., Horikoshi,M., Nakatani,Y. and Roeder,R.G. TITLE Evolutionary conservation of human TATA-binding-polypeptide-associated factors TAFII31 and TAFII80 and interactions of TAFII80 with other TAFs and with general transcription factors JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92 (18), 8195-8199 (1995) MEDLINE 95396764 PUBMED 7667268 REFERENCE 3 (bases 1 to 2737) AUTHORS Bell,B., Scheer,E. and Tora,L. TITLE Identification of hTAF(II)80 delta links apoptotic signaling pathways to transcription factor TFIID function JOURNAL Mol. Cell 8 (3), 591-600 (2001) MEDLINE 21468393 PUBMED 11583621 COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from L25444.1 and AU143362.1. On Jun 21, 2002 this sequence version replaced gi:5032146. Summary: Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes one of the smaller subunits of TFIID that binds weakly to TBP but strongly to TAF1, the largest subunit of TFIID. Four isoforms have been identified but complete transcripts have been determined for only three isoforms. One of the isoforms has been shown to preclude binding of one of the other TFIID subunits, thereby reducing transcription and initiating signals that trigger apoptosis. Transcript Variant: This variant (1) encodes the longest isoform (alpha). COMPLETENESS: complete on the 3' end. FEATURES Location/Qualifiers source 1..2737 /organism="Homo sapiens" /db_xref="taxon:9606" /chromosome="7" /map="7q22.1" gene 1..2737 /gene="TAF6" /note="synonyms: TAF2E, TAFII70, TAFII80, TAFII85, MGC:8964" /db_xref="LocusID:6878" /db_xref="MIM:602955" misc_feature 153..475 /gene="TAF6" /note="Region: missing in transcript variants 2, 3 and 4" CDS 537..2570 /gene="TAF6" /note="TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80 kD; TATA box binding protein (TBP)-associated factor, RNA polymerase II, E, 70/85kD; transcription initiation factor TFIID 70 kD subunit" /codon_start=1 /product="TBP-associated factor 6 isoform alpha" /protein_id="NP_005632.1" /db_xref="GI:5032147" /db_xref="LocusID:6878" /db_xref="MIM:602955" /translation="MAEEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVS YRIKEIAQDALKFMHMGKRQKLTTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGR ELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAE ATEPLKSAKPGQEEDGPLKGKGQGATTADGKGKEKKAPPLLEGAPLRLKPRSIHELSV EQQLYYKEITEACVGSCEAKRAEALQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNL ALLIYLMRMVKALMDNPTLYLEKYVHELIPAVMTCIVSRQLCLRPDVDNHWALRDFAA RLVAQICKHFSTTTNNIQSRITKTFTKSWVDEKTPWTTRYGSIAGLAELGHDVIKTLI LPRLQQEGERIRSVLDGPVLSNIDRIGADHVQSLLLKHCAPVLAKLRPPPDNQDAYRA EFGSLGPLLCSQVVKARAQAALQAQQVNRTTLTITQPRPTLTLSQAPQPGPRTPGLLK VPGSIALPVQTLVSARAAAPPQPSPPPTKFIVMSSSSSAPSTQQVLSLSTSAPGSGST TTSPVTTTVPSVQPIVKLVSTATTAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSH PSPVPPPASSPSPLSGSALCGGKQEAGDSPPPAPGTPKANGSQPNSGSPQPAP" misc_feature 561..1760 /gene="TAF6" /note="Region: COG5095, TAF6, Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]" /db_xref="CDD:COG5095" misc_feature 564..764 /gene="TAF6" /note="TAF; Region: TATA box binding protein associated factor (TAF). TAF proteins adopt a histone-like fold" /db_xref="CDD:pfam02969" misc_feature 663..692 /gene="TAF6" /note="Region: missing in transcript variant 4" misc_feature 1965..1994 /gene="TAF6" /note="Region: missing in transcript variant 3" variation 2590 /gene="TAF6" /allele="T" /allele="C" /db_xref="dbSNP:4134928" polyA_signal 2720..2725 /gene="TAF6" /evidence=experimental polyA_site 2737 /gene="TAF6" BASE COUNT 556 a 873 c 769 g 539 t ORIGIN 1 gcggggccaa gatggcgccg agcgccgggt gagcagcgtc tcggctgccg ctagagtttt 61 cctgctcccc gcgctcgggt ggcgggggcg ggtctgagtg gtaccccgga ggagaccctt 121 tgaaggtccc ttgtggggac tggaaagagg acggttggtt gtgtgtctgt gctcgtgggg 181 accccgtgtg tgtgcctgca ttggagagat gttgcaggag atggggtggg ctctctgaac 241 ctcctttcgc gctgcccggg gatcttcgac ctgcttctct gctgggatct cgcttaagtt 301 aacccttccc tgggacgcct tcctgccgcc tccactgatc tgaggagatc ctgtgactgt 361 agcgtgtttt atgagccttt actggcagag ggtaccgccg ggtattgaag gattcgtagg 421 agttcgccag ggaagtggga cacgaccccc tcttgtaaac ccggcgccag gcacagaggt 481 ctccgtctct ccaccggggg cttcatcctt ccagggagga gaagagggac tccagaatgg 541 ctgaggagaa gaagctgaag cttagcaaca ctgtgctgcc ctcggagtcc atgaaggtgg 601 tggctgaatc catgggcatc gcccagattc aggaggagac ctgccagctg ctaacggatg 661 aggtcagcta ccgcatcaaa gagatcgcac aggatgcctt gaagttcatg cacatgggga 721 agcggcagaa gctcaccacc agtgacattg actacgcctt gaagctaaag aatgtcgagc 781 cactctatgg cttccacgcc caggagttca ttcctttccg cttcgcctct ggtgggggcc 841 gggagcttta cttctatgag gagaaggagg ttgatctgag cgacatcatc aatacccctc 901 tgccccgggt gcccctggac gtctgcctca aagctcattg gctgagcatc gagggctgcc 961 agccagctat ccccgagaac ccgcccccag ctcccaaaga gcaacagaag gctgaagcca 1021 cagaacccct gaagtcagcc aagccaggcc aggaggaaga cggacccctg aagggcaaag 1081 gtcaaggggc caccacagcc gacggcaaag ggaaagagaa gaaggcgccg cccttgctgg 1141 agggggcccc cttgcgactg aagccccgga gcatccacga gttgtctgtg gagcagcagc 1201 tctactacaa ggagatcacc gaggcctgcg tgggctcctg cgaggccaag agggcggaag 1261 ccctgcaaag cattgccacg gaccctggac tgtatcagat gctgccacgg ttcagtacct 1321 ttatctcgga gggggtccgt gtgaacgtgg ttcagaacaa cctggcccta ctcatctacc 1381 tgatgcgtat ggtgaaagcg ctgatggaca accccacgct ctatctagaa aaatacgtcc 1441 atgagctgat tccagctgtg atgacctgca tcgtgagcag acagttgtgc ctgcgaccag 1501 atgtggacaa tcactgggca ctccgagact ttgctgcccg cctggtggcc cagatctgca 1561 agcattttag cacaaccact aacaacatcc agtcccggat caccaagacc ttcaccaaga 1621 gctgggtgga cgagaagacg ccctggacga ctcgttatgg ctccatcgca ggcttggctg 1681 agctgggaca cgatgttatc aagactctga ttctgccccg gctgcagcag gaaggggagc 1741 ggatccgcag tgtgctggac ggccctgtgc tgagcaacat tgaccggatt ggagcagacc 1801 atgtgcagag cctcctgctg aaacactgtg ctcctgttct ggcaaagctg cgcccaccgc 1861 ctgacaatca ggacgcctat cgggcagaat tcgggtccct tgggcccctc ctctgctccc 1921 aggtggtcaa ggctcgggcc caggctgctc tgcaggctca gcaggtcaac aggaccactc 1981 tgaccatcac gcagccccgg cccacgctga ccctctcgca ggccccacag cctggccctc 2041 gcacccctgg cttgctgaag gttcctggct ccatcgcact tcctgtccag acactggtgt 2101 ctgcacgagc ggctgcccca ccacagcctt cccctcctcc aaccaagttt attgtaatgt 2161 catcgtcctc cagcgcccca tccacccagc aggtcctgtc cctcagcacc tcggcccccg 2221 gctcaggttc caccaccact tcgcccgtca ccaccaccgt ccccagcgtg cagcccatcg 2281 tcaagttggt ctccaccgcc accaccgcac cccccagcac tgctccctct ggtcctggga 2341 gtgtccagaa gtacatcgtg gtctcacttc ccccaacagg ggagggcaaa ggaggcccca 2401 cctcccatcc ttctccagtt cctcccccgg catcgtcccc gtccccactc agcggcagtg 2461 ccctttgtgg ggggaagcag gaggctgggg acagtccccc tccagctcca gggactccaa 2521 aagccaatgg ctcccagccc aactccggct cccctcagcc tgctccgtga tgctccacct 2581 gccagccccc ggattcccac acatgcagac atgtacacac gtgcacgtac acacatgcat 2641 gctcgctaag cggaaggaag ttgtagattg cttccttcat gtcactttct ttttagatat 2701 tgtacagcca gtttctcaga ataaaagttt ggtttgt // gff2aplot-2.0.orig/examples/wublast/taf6.mmhs.genomic.blastn.aplot.gff0000664000000000000000000000572607667662610025776 0ustar rootroot00000000000000NM_009315:NM_005641 BLASTN hsp 5219:11597 5832:12218 1405 +:+ .:. 216.9:1 NM_009315:NM_005641 BLASTN hsp 1719:7067 2099:7448 1122 +:+ .:. 174.4:2 NM_009315:NM_005641 BLASTN hsp 664:5482 1262:6065 944 +:+ .:. 147.7:3 NM_009315:NM_005641 BLASTN hsp 4851:11198 5137:11485 848 +:+ .:. 133.3:4 NM_009315:NM_005641 BLASTN hsp 2375:8002 2778:8402 834 +:+ .:. 131.2:5 NM_009315:NM_005641 BLASTN hsp 3109:8902 3832:9636 831 +:+ .:. 130.7:6 NM_009315:NM_005641 BLASTN hsp 4535:10806 4738:11009 741 +:+ .:. 117.2:7 NM_009315:NM_005641 BLASTN hsp 1239:6393 1462:6618 724 +:+ .:. 114.7:8 NM_009315:NM_005641 BLASTN hsp 1:5138 292:5426 691 +:+ .:. 109.7:9 NM_009315:NM_005641 BLASTN hsp 2116:7444 2390:7714 654 +:+ .:. 104.2:10 NM_009315:NM_005641 BLASTN hsp 550:5378 675:5504 460 +:+ .:. 75.1:11 NM_009315:NM_005641 BLASTN hsp 5558:11954 5878:12278 357 +:+ .:. 59.6:12 NM_009315:NM_005641 BLASTN hsp 3086:6827 3175:6924 253 +:+ .:. 44.0:13 NM_009315:NM_005641 BLASTN hsp 3079:1490 3192:1610 252 +:+ .:. 43.9:14 NM_009315:NM_005641 BLASTN hsp 3058:10064 3177:10180 212 +:+ .:. 37.9:15 NM_009315:NM_005641 BLASTN hsp 3083:3564 3204:3694 205 +:+ .:. 36.8:16 NM_009315:NM_005641 BLASTN hsp 3056:3724 3172:3837 204 +:+ .:. 36.7:17 NM_009315:NM_005641 BLASTN hsp 3061:3416 3172:3528 200 +:+ .:. 36.1:18 NM_009315:NM_005641 BLASTN hsp 3114:2801 3172:2860 195 +:+ .:. 35.3:19 NM_009315:NM_005641 BLASTN hsp 3028:10323 3190:10493 179 +:+ .:. 32.9:20 NM_009315:NM_005641 BLASTN hsp 3104:8752 3175:8825 178 +:+ .:. 32.8:21 NM_009315:NM_005641 BLASTN hsp 3114:2194 3172:2253 177 +:+ .:. 32.6:22 NM_009315:NM_005641 BLASTN hsp 3111:1390 3177:1461 177 +:+ .:. 32.6:23 NM_009315:NM_005641 BLASTN hsp 2757:6007 2926:6180 172 +:+ .:. 31.9:24 NM_009315:NM_005641 BLASTN hsp 2769:9981 2855:10063 170 +:+ .:. 31.6:25 NM_009315:NM_005641 BLASTN hsp 3118:8633 3192:8708 169 +:+ .:. 31.4:26 NM_009315:NM_005641 BLASTN hsp 3109:10246 3172:10311 165 +:+ .:. 30.8:27 NM_009315:NM_005641 BLASTN hsp 2710:10244 3013:10543 164 +:+ .:. 30.7:28 NM_009315:NM_005641 BLASTN hsp 3111:913 3190:994 164 +:+ .:. 30.7:29 NM_009315:NM_005641 BLASTN hsp 2728:929 3006:1212 156 +:+ .:. 29.5:30 NM_009315:NM_005641 BLASTN hsp 2788:6612 2855:6673 151 +:+ .:. 28.7:31 NM_009315:NM_005641 BLASTN hsp 3118:6314 3167:6364 150 +:+ .:. 28.6:32 NM_009315:NM_005641 BLASTN hsp 357:1748 463:1853 150 +:+ .:. 28.6:33 NM_009315:NM_005641 BLASTN hsp 3082:10512 3156:10581 149 +:+ .:. 28.4:34 NM_009315:NM_005641 BLASTN hsp 2710:4552 2804:4647 149 +:+ .:. 28.4:35 NM_009315:NM_005641 BLASTN hsp 2791:1283 2855:1342 142 +:+ .:. 27.4:36 NM_009315:NM_005641 BLASTN hsp 2797:3670 2842:3715 140 +:+ .:. 27.1:37 NM_009315:NM_005641 BLASTN hsp 2727:605 2911:791 139 +:+ .:. 26.9:38 NM_009315:NM_005641 BLASTN hsp 2804:8525 2863:8585 137 +:+ .:. 26.6:39 NM_009315:NM_005641 BLASTN hsp 399:9592 453:9647 132 +:+ .:. 25.9:40 NM_009315:NM_005641 BLASTN hsp 2811:8839 2950:8979 128 +:+ .:. 25.3:41 NM_009315:NM_005641 BLASTN hsp 2783:1290 3006:1523 127 +:+ .:. 25.1:42 gff2aplot-2.0.orig/examples/wublast/taf6.mm.gene.gff0000664000000000000000000000157107667662610022332 0ustar rootroot00000000000000NM_009315 chr5 utrexon 1 10 . + . "M.musculus" NM_009315 chr5 initialexon 11 166 . + . "M.musculus" NM_009315 chr5 internalexon 574 660 . + . "M.musculus" NM_009315 chr5 internalexon 778 931 . + . "M.musculus" NM_009315 chr5 internalexon 1129 1185 . + . "M.musculus" NM_009315 chr5 internalexon 1285 1404 . + . "M.musculus" NM_009315 chr5 internalexon 1756 1901 . + . "M.musculus" NM_009315 chr5 internalexon 2008 2085 . + . "M.musculus" NM_009315 chr5 internalexon 2197 2298 . + . "M.musculus" NM_009315 chr5 internalexon 2409 2591 . + . "M.musculus" NM_009315 chr5 internalexon 3307 3381 . + . "M.musculus" NM_009315 chr5 internalexon 3483 3608 . + . "M.musculus" NM_009315 chr5 internalexon 4546 4719 . + . "M.musculus" NM_009315 chr5 internalexon 4889 5086 . + . "M.musculus" NM_009315 chr5 terminalexon 5353 5733 . + . "M.musculus" NM_009315 chr5 utrexon 5734 5878 . + . "M.musculus" gff2aplot-2.0.orig/examples/wublast/taf6.hs.gene.gff0000664000000000000000000000165407667662610022335 0ustar rootroot00000000000000NM_005641 chr7 utrexon 1 477 . + . "H.sapiens" NM_005641 chr7 utrexon 5089 5147 . + . "H.sapiens" NM_005641 chr7 initialexon 5148 5303 . + . "H.sapiens" NM_005641 chr7 internalexon 5403 5489 . + . "H.sapiens" NM_005641 chr7 internalexon 5588 5741 . + . "H.sapiens" NM_005641 chr7 internalexon 5952 6008 . + . "H.sapiens" NM_005641 chr7 internalexon 6440 6559 . + . "H.sapiens" NM_005641 chr7 internalexon 7104 7249 . + . "H.sapiens" NM_005641 chr7 internalexon 7358 7435 . + . "H.sapiens" NM_005641 chr7 internalexon 7528 7629 . + . "H.sapiens" NM_005641 chr7 internalexon 8036 8218 . + . "H.sapiens" NM_005641 chr7 internalexon 9083 9157 . + . "H.sapiens" NM_005641 chr7 internalexon 9284 9409 . + . "H.sapiens" NM_005641 chr7 internalexon 10817 10990 . + . "H.sapiens" NM_005641 chr7 internalexon 11234 11431 . + . "H.sapiens" NM_005641 chr7 terminalexon 11734 12111 . + . "H.sapiens" NM_005641 chr7 utrexon 12112 12278 . + . "H.sapiens" gff2aplot-2.0.orig/examples/wublast/taf6.mmhs.genomic.tblastx.gff0000664000000000000000000004556107667662610025057 0ustar rootroot00000000000000NM_009315 TBLASTX hsp 4867 5778 839 + . Target "NM_005641"; Start 11212; End 12162; Strand +; Frame .; NM_009315 TBLASTX hsp 4874 5785 645 + . Target "NM_005641"; Start 11219; End 12151; Strand +; Frame .; NM_009315 TBLASTX hsp 2379 2621 344 + . Target "NM_005641"; Start 8006; End 8248; Strand +; Frame .; NM_009315 TBLASTX hsp 673 1017 321 + . Target "NM_005641"; Start 5471; End 5833; Strand +; Frame .; NM_009315 TBLASTX hsp 4519 4773 315 + . Target "NM_005641"; Start 10778; End 11065; Strand +; Frame .; NM_009315 TBLASTX hsp 1719 1913 285 + . Target "NM_005641"; Start 7067; End 7261; Strand +; Frame .; NM_009315 TBLASTX hsp 2 172 262 + . Target "NM_005641"; Start 5139; End 5309; Strand +; Frame .; NM_009315 TBLASTX hsp 1212 1409 252 + . Target "NM_005641"; Start 6373; End 6564; Strand +; Frame .; NM_009315 TBLASTX hsp 762 1061 252 + . Target "NM_005641"; Start 5572; End 5880; Strand +; Frame .; NM_009315 TBLASTX hsp 3432 3638 247 + . Target "NM_005641"; Start 9233; End 9439; Strand +; Frame .; NM_009315 TBLASTX hsp 2378 2605 227 + . Target "NM_005641"; Start 8005; End 8232; Strand +; Frame .; NM_009315 TBLASTX hsp 3140 3613 194 + . Target "NM_005641"; Start 8935; End 9414; Strand +; Frame .; NM_009315 TBLASTX hsp 2116 2373 190 + . Target "NM_005641"; Start 7444; End 7698; Strand +; Frame .; NM_009315 TBLASTX hsp 6 173 188 + . Target "NM_005641"; Start 5143; End 5310; Strand +; Frame .; NM_009315 TBLASTX hsp 505 738 187 + . Target "NM_005641"; Start 5322; End 5579; Strand +; Frame .; NM_009315 TBLASTX hsp 7 174 184 + . Target "NM_005641"; Start 5144; End 5311; Strand +; Frame .; NM_009315 TBLASTX hsp 1228 1458 178 + . Target "NM_005641"; Start 6368; End 6613; Strand +; Frame .; NM_009315 TBLASTX hsp 1906 2100 159 + . Target "NM_005641"; Start 7265; End 7450; Strand +; Frame .; NM_009315 TBLASTX hsp 1980 2348 159 + . Target "NM_005641"; Start 7329; End 7676; Strand +; Frame .; NM_009315 TBLASTX hsp 1941 2126 136 + . Target "NM_005641"; Start 7288; End 7482; Strand +; Frame .; NM_009315 TBLASTX hsp 1104 1226 135 + . Target "NM_005641"; Start 5927; End 6040; Strand +; Frame .; NM_009315 TBLASTX hsp 5612 5878 94 + . Target "NM_005641"; Start 12030; End 12278; Strand +; Frame .; NM_009315 TBLASTX hsp 2791 2877 73 + . Target "NM_005641"; Start 676; End 744; Strand +; Frame .; NM_009315 TBLASTX hsp 3083 3175 71 + . Target "NM_005641"; Start 10044; End 10178; Strand +; Frame .; NM_009315 TBLASTX hsp 2773 2880 71 + . Target "NM_005641"; Start 1278; End 1358; Strand +; Frame .; NM_009315 TBLASTX hsp 683 787 65 + . Target "NM_005641"; Start 3408; End 3518; Strand +; Frame .; NM_009315 TBLASTX hsp 3503 3724 63 + . Target "NM_005641"; Start 11672; End 11920; Strand +; Frame .; NM_009315 TBLASTX hsp 405 464 61 + . Target "NM_005641"; Start 1930; End 1989; Strand +; Frame .; NM_009315 TBLASTX hsp 2790 3026 61 + . Target "NM_005641"; Start 6614; End 6844; Strand +; Frame .; NM_009315 TBLASTX hsp 4895 5158 60 + . Target "NM_005641"; Start 11942; End 12223; Strand +; Frame .; NM_009315 TBLASTX hsp 4041 4097 60 + . Target "NM_005641"; Start 6339; End 6395; Strand +; Frame .; NM_009315 TBLASTX hsp 2785 2850 59 + . Target "NM_005641"; Start 10005; End 10058; Strand +; Frame .; NM_009315 TBLASTX hsp 686 784 59 + . Target "NM_005641"; Start 6667; End 6771; Strand +; Frame .; NM_009315 TBLASTX hsp 3121 3186 59 + . Target "NM_005641"; Start 6873; End 6935; Strand +; Frame .; NM_009315 TBLASTX hsp 3028 3171 59 + . Target "NM_005641"; Start 3684; End 3836; Strand +; Frame .; NM_009315 TBLASTX hsp 3123 3182 59 + . Target "NM_005641"; Start 2946; End 3005; Strand +; Frame .; NM_009315 TBLASTX hsp 304 519 55 + . Target "NM_005641"; Start 9309; End 9518; Strand +; Frame .; NM_009315 TBLASTX hsp 4041 4100 54 + . Target "NM_005641"; Start 10281; End 10340; Strand +; Frame .; NM_009315 TBLASTX hsp 4047 4109 54 + . Target "NM_005641"; Start 8664; End 8726; Strand +; Frame .; NM_009315 TBLASTX hsp 3031 3174 53 + . Target "NM_005641"; Start 10322; End 10477; Strand +; Frame .; NM_009315 TBLASTX hsp 686 772 53 + . Target "NM_005641"; Start 3720; End 3812; Strand +; Frame .; NM_009315 TBLASTX hsp 2770 2850 53 + . Target "NM_005641"; Start 6603; End 6668; Strand +; Frame .; NM_009315 TBLASTX hsp 3136 3177 53 + . Target "NM_005641"; Start 1110; End 1151; Strand +; Frame .; NM_009315 TBLASTX hsp 4579 4647 52 + . Target "NM_005641"; Start 8188; End 8256; Strand +; Frame .; NM_009315 TBLASTX hsp 3028 3141 52 + . Target "NM_005641"; Start 685; End 810; Strand +; Frame .; NM_009315 TBLASTX hsp 2804 2836 51 + . Target "NM_005641"; Start 8525; End 8557; Strand +; Frame .; NM_009315 TBLASTX hsp 3095 3175 51 + . Target "NM_005641"; Start 10407; End 10478; Strand +; Frame .; NM_009315 TBLASTX hsp 4002 4097 51 + . Target "NM_005641"; Start 4547; End 4645; Strand +; Frame .; NM_009315 TBLASTX hsp 4166 4249 50 + . Target "NM_005641"; Start 7241; End 7333; Strand +; Frame .; NM_009315 TBLASTX hsp 5536 5694 50 + . Target "NM_005641"; Start 11141; End 11311; Strand +; Frame .; NM_009315 TBLASTX hsp 555 608 50 + . Target "NM_005641"; Start 7342; End 7392; Strand +; Frame .; NM_009315 TBLASTX hsp 405 464 50 + . Target "NM_005641"; Start 7849; End 7908; Strand +; Frame .; NM_009315 TBLASTX hsp 1447 1500 49 + . Target "NM_005641"; Start 6928; End 6978; Strand +; Frame .; NM_009315 TBLASTX hsp 2916 3011 49 + . Target "NM_005641"; Start 10443; End 10541; Strand +; Frame .; NM_009315 TBLASTX hsp 931 1125 49 + . Target "NM_005641"; Start 5746; End 5943; Strand +; Frame .; NM_009315 TBLASTX hsp 1501 1587 49 + . Target "NM_005641"; Start 7763; End 7849; Strand +; Frame .; NM_009315 TBLASTX hsp 3028 3168 49 + . Target "NM_005641"; Start 1465; End 1587; Strand +; Frame .; NM_009315 TBLASTX hsp 3121 3168 48 + . Target "NM_005641"; Start 6321; End 6365; Strand +; Frame .; NM_009315 TBLASTX hsp 2792 2842 48 + . Target "NM_005641"; Start 3674; End 3715; Strand +; Frame .; NM_009315 TBLASTX hsp 3083 3139 48 + . Target "NM_005641"; Start 4520; End 4585; Strand +; Frame .; NM_009315 TBLASTX hsp 4029 4091 48 + . Target "NM_005641"; Start 2821; End 2880; Strand +; Frame .; NM_009315 TBLASTX hsp 2913 2969 47 + . Target "NM_005641"; Start 8482; End 8538; Strand +; Frame .; NM_009315 TBLASTX hsp 3118 3150 47 + . Target "NM_005641"; Start 10544; End 10576; Strand +; Frame .; NM_009315 TBLASTX hsp 4047 4097 47 + . Target "NM_005641"; Start 8493; End 8543; Strand +; Frame .; NM_009315 TBLASTX hsp 689 784 47 + . Target "NM_005641"; Start 4665; End 4766; Strand +; Frame .; NM_009315 TBLASTX hsp 3086 3115 47 + . Target "NM_005641"; Start 6827; End 6856; Strand +; Frame .; NM_009315 TBLASTX hsp 3083 3121 47 + . Target "NM_005641"; Start 6654; End 6692; Strand +; Frame .; NM_009315 TBLASTX hsp 3056 3211 47 + . Target "NM_005641"; Start 2989; End 3156; Strand +; Frame .; NM_009315 TBLASTX hsp 3136 3168 46 + . Target "NM_005641"; Start 10275; End 10307; Strand +; Frame .; NM_009315 TBLASTX hsp 408 476 46 + . Target "NM_005641"; Start 1798; End 1866; Strand +; Frame .; NM_009315 TBLASTX hsp 4888 4950 46 + . Target "NM_005641"; Start 10422; End 10484; Strand +; Frame .; NM_009315 TBLASTX hsp 546 590 46 + . Target "NM_005641"; Start 3051; End 3086; Strand +; Frame .; NM_009315 TBLASTX hsp 2806 2844 46 + . Target "NM_005641"; Start 6047; End 6094; Strand +; Frame .; NM_009315 TBLASTX hsp 5758 5823 46 + . Target "NM_005641"; Start 10842; End 10907; Strand +; Frame .; NM_009315 TBLASTX hsp 2794 2871 46 + . Target "NM_005641"; Start 3670; End 3747; Strand +; Frame .; NM_009315 TBLASTX hsp 3621 3713 46 + . Target "NM_005641"; Start 4612; End 4704; Strand +; Frame .; NM_009315 TBLASTX hsp 1143 1187 45 + . Target "NM_005641"; Start 8580; End 8624; Strand +; Frame .; NM_009315 TBLASTX hsp 3029 3121 45 + . Target "NM_005641"; Start 1299; End 1361; Strand +; Frame .; NM_009315 TBLASTX hsp 4047 4091 45 + . Target "NM_005641"; Start 3813; End 3857; Strand +; Frame .; NM_009315 TBLASTX hsp 4233 4304 45 + . Target "NM_005641"; Start 2166; End 2240; Strand +; Frame .; NM_009315 TBLASTX hsp 4353 4457 45 + . Target "NM_005641"; Start 2071; End 2172; Strand +; Frame .; NM_009315 TBLASTX hsp 3817 3882 44 + . Target "NM_005641"; Start 9908; End 9973; Strand +; Frame .; NM_009315 TBLASTX hsp 3012 3152 44 + . Target "NM_005641"; Start 8506; End 8667; Strand +; Frame .; NM_009315 TBLASTX hsp 3144 3176 44 + . Target "NM_005641"; Start 10447; End 10479; Strand +; Frame .; NM_009315 TBLASTX hsp 5430 5534 44 + . Target "NM_005641"; Start 9313; End 9423; Strand +; Frame .; NM_009315 TBLASTX hsp 4655 4735 44 + . Target "NM_005641"; Start 6495; End 6575; Strand +; Frame .; NM_009315 TBLASTX hsp 3793 3849 44 + . Target "NM_005641"; Start 5563; End 5619; Strand +; Frame .; NM_009315 TBLASTX hsp 3118 3165 44 + . Target "NM_005641"; Start 3610; End 3654; Strand +; Frame .; NM_009315 TBLASTX hsp 3083 3166 44 + . Target "NM_005641"; Start 1017; End 1100; Strand +; Frame .; NM_009315 TBLASTX hsp 5625 5684 44 + . Target "NM_005641"; Start 5493; End 5552; Strand +; Frame .; NM_009315 TBLASTX hsp 3138 3176 43 + . Target "NM_005641"; Start 8788; End 8826; Strand +; Frame .; NM_009315 TBLASTX hsp 3654 3728 43 + . Target "NM_005641"; Start 9429; End 9503; Strand +; Frame .; NM_009315 TBLASTX hsp 405 476 43 + . Target "NM_005641"; Start 4206; End 4277; Strand +; Frame .; NM_009315 TBLASTX hsp 856 978 43 + . Target "NM_005641"; Start 6448; End 6570; Strand +; Frame .; NM_009315 TBLASTX hsp 1600 1629 43 + . Target "NM_005641"; Start 4298; End 4327; Strand +; Frame .; NM_009315 TBLASTX hsp 5434 5481 43 + . Target "NM_005641"; Start 10718; End 10765; Strand +; Frame .; NM_009315 TBLASTX hsp 3075 3125 43 + . Target "NM_005641"; Start 11897; End 11947; Strand +; Frame .; NM_009315 TBLASTX hsp 2978 3019 43 + . Target "NM_005641"; Start 3874; End 3915; Strand +; Frame .; NM_009315 TBLASTX hsp 4041 4091 43 + . Target "NM_005641"; Start 1561; End 1608; Strand +; Frame .; NM_009315 TBLASTX hsp 4866 5786 772 - . Target "NM_005641"; Start 11211; End 12152; Strand -; Frame .; NM_009315 TBLASTX hsp 2258 2611 309 - . Target "NM_005641"; Start 7852; End 8238; Strand -; Frame .; NM_009315 TBLASTX hsp 762 1058 293 - . Target "NM_005641"; Start 5572; End 5877; Strand -; Frame .; NM_009315 TBLASTX hsp 4518 4721 290 - . Target "NM_005641"; Start 10777; End 10992; Strand -; Frame .; NM_009315 TBLASTX hsp 1718 1912 261 - . Target "NM_005641"; Start 7066; End 7260; Strand -; Frame .; NM_009315 TBLASTX hsp 3392 3643 250 - . Target "NM_005641"; Start 9172; End 9441; Strand -; Frame .; NM_009315 TBLASTX hsp 4 174 236 - . Target "NM_005641"; Start 5141; End 5311; Strand -; Frame .; NM_009315 TBLASTX hsp 1259 1408 235 - . Target "NM_005641"; Start 6414; End 6563; Strand -; Frame .; NM_009315 TBLASTX hsp 2116 2349 209 - . Target "NM_005641"; Start 7444; End 7677; Strand -; Frame .; NM_009315 TBLASTX hsp 3 173 192 - . Target "NM_005641"; Start 5140; End 5310; Strand -; Frame .; NM_009315 TBLASTX hsp 2 172 190 - . Target "NM_005641"; Start 5139; End 5309; Strand -; Frame .; NM_009315 TBLASTX hsp 2112 2345 166 - . Target "NM_005641"; Start 7440; End 7673; Strand -; Frame .; NM_009315 TBLASTX hsp 1998 2099 148 - . Target "NM_005641"; Start 7348; End 7449; Strand -; Frame .; NM_009315 TBLASTX hsp 3291 3386 137 - . Target "NM_005641"; Start 9067; End 9162; Strand -; Frame .; NM_009315 TBLASTX hsp 554 769 135 - . Target "NM_005641"; Start 5386; End 5583; Strand -; Frame .; NM_009315 TBLASTX hsp 1118 1225 125 - . Target "NM_005641"; Start 5941; End 6039; Strand -; Frame .; NM_009315 TBLASTX hsp 5705 5878 83 - . Target "NM_005641"; Start 12081; End 12278; Strand -; Frame .; NM_009315 TBLASTX hsp 5677 5877 76 - . Target "NM_005641"; Start 12065; End 12277; Strand -; Frame .; NM_009315 TBLASTX hsp 3036 3185 73 - . Target "NM_005641"; Start 6791; End 6934; Strand -; Frame .; NM_009315 TBLASTX hsp 3030 3167 67 - . Target "NM_005641"; Start 6242; End 6364; Strand -; Frame .; NM_009315 TBLASTX hsp 930 1091 66 - . Target "NM_005641"; Start 5745; End 5909; Strand -; Frame .; NM_009315 TBLASTX hsp 3052 3177 65 - . Target "NM_005641"; Start 10013; End 10180; Strand -; Frame .; NM_009315 TBLASTX hsp 4035 4103 65 - . Target "NM_005641"; Start 2824; End 2886; Strand -; Frame .; NM_009315 TBLASTX hsp 2978 3142 64 - . Target "NM_005641"; Start 2639; End 2797; Strand -; Frame .; NM_009315 TBLASTX hsp 3139 3177 61 - . Target "NM_005641"; Start 1113; End 1151; Strand -; Frame .; NM_009315 TBLASTX hsp 3915 4103 60 - . Target "NM_005641"; Start 8367; End 8549; Strand -; Frame .; NM_009315 TBLASTX hsp 2999 3148 60 - . Target "NM_005641"; Start 686; End 817; Strand -; Frame .; NM_009315 TBLASTX hsp 3136 3180 59 - . Target "NM_005641"; Start 10439; End 10483; Strand -; Frame .; NM_009315 TBLASTX hsp 3089 3190 58 - . Target "NM_005641"; Start 884; End 994; Strand -; Frame .; NM_009315 TBLASTX hsp 4041 4103 57 - . Target "NM_005641"; Start 10281; End 10340; Strand -; Frame .; NM_009315 TBLASTX hsp 2769 2870 57 - . Target "NM_005641"; Start 5032; End 5118; Strand -; Frame .; NM_009315 TBLASTX hsp 4041 4103 57 - . Target "NM_005641"; Start 3807; End 3863; Strand -; Frame .; NM_009315 TBLASTX hsp 3121 3177 56 - . Target "NM_005641"; Start 1405; End 1461; Strand -; Frame .; NM_009315 TBLASTX hsp 638 715 56 - . Target "NM_005641"; Start 10988; End 11065; Strand -; Frame .; NM_009315 TBLASTX hsp 3115 3186 55 - . Target "NM_005641"; Start 6849; End 6935; Strand -; Frame .; NM_009315 TBLASTX hsp 3089 3166 55 - . Target "NM_005641"; Start 4821; End 4907; Strand -; Frame .; NM_009315 TBLASTX hsp 399 542 54 - . Target "NM_005641"; Start 1789; End 1911; Strand -; Frame .; NM_009315 TBLASTX hsp 2789 2944 54 - . Target "NM_005641"; Start 1282; End 1452; Strand -; Frame .; NM_009315 TBLASTX hsp 3041 3163 54 - . Target "NM_005641"; Start 2112; End 2240; Strand -; Frame .; NM_009315 TBLASTX hsp 5574 5693 53 - . Target "NM_005641"; Start 11203; End 11310; Strand -; Frame .; NM_009315 TBLASTX hsp 2728 3000 53 - . Target "NM_005641"; Start 4572; End 4838; Strand -; Frame .; NM_009315 TBLASTX hsp 2986 3189 53 - . Target "NM_005641"; Start 3493; End 3678; Strand -; Frame .; NM_009315 TBLASTX hsp 399 503 53 - . Target "NM_005641"; Start 9591; End 9707; Strand -; Frame .; NM_009315 TBLASTX hsp 405 467 52 - . Target "NM_005641"; Start 1930; End 1992; Strand -; Frame .; NM_009315 TBLASTX hsp 2785 3006 52 - . Target "NM_005641"; Start 2692; End 2925; Strand -; Frame .; NM_009315 TBLASTX hsp 3142 3171 52 - . Target "NM_005641"; Start 3807; End 3836; Strand -; Frame .; NM_009315 TBLASTX hsp 3139 3195 52 - . Target "NM_005641"; Start 1558; End 1614; Strand -; Frame .; NM_009315 TBLASTX hsp 224 295 51 - . Target "NM_005641"; Start 298; End 369; Strand -; Frame .; NM_009315 TBLASTX hsp 2784 2855 51 - . Target "NM_005641"; Start 10004; End 10063; Strand -; Frame .; NM_009315 TBLASTX hsp 2787 2855 51 - . Target "NM_005641"; Start 6611; End 6673; Strand -; Frame .; NM_009315 TBLASTX hsp 3135 3176 51 - . Target "NM_005641"; Start 1109; End 1150; Strand -; Frame .; NM_009315 TBLASTX hsp 3032 3148 50 - . Target "NM_005641"; Start 8535; End 8663; Strand -; Frame .; NM_009315 TBLASTX hsp 3918 4088 50 - . Target "NM_005641"; Start 8541; End 8705; Strand -; Frame .; NM_009315 TBLASTX hsp 3122 3190 50 - . Target "NM_005641"; Start 2945; End 3013; Strand -; Frame .; NM_009315 TBLASTX hsp 3577 3663 50 - . Target "NM_005641"; Start 3545; End 3634; Strand -; Frame .; NM_009315 TBLASTX hsp 2659 2865 49 - . Target "NM_005641"; Start 5924; End 6115; Strand -; Frame .; NM_009315 TBLASTX hsp 3121 3171 49 - . Target "NM_005641"; Start 3480; End 3527; Strand -; Frame .; NM_009315 TBLASTX hsp 3118 3171 49 - . Target "NM_005641"; Start 2809; End 2859; Strand -; Frame .; NM_009315 TBLASTX hsp 399 521 48 - . Target "NM_005641"; Start 4200; End 4301; Strand -; Frame .; NM_009315 TBLASTX hsp 3135 3173 48 - . Target "NM_005641"; Start 10438; End 10476; Strand -; Frame .; NM_009315 TBLASTX hsp 2905 3006 48 - . Target "NM_005641"; Start 6192; End 6299; Strand -; Frame .; NM_009315 TBLASTX hsp 4020 4103 48 - . Target "NM_005641"; Start 2202; End 2279; Strand -; Frame .; NM_009315 TBLASTX hsp 3139 3189 47 - . Target "NM_005641"; Start 10278; End 10328; Strand -; Frame .; NM_009315 TBLASTX hsp 1973 2083 47 - . Target "NM_005641"; Start 1531; End 1635; Strand -; Frame .; NM_009315 TBLASTX hsp 4043 4114 47 - . Target "NM_005641"; Start 3809; End 3883; Strand -; Frame .; NM_009315 TBLASTX hsp 4227 4262 46 - . Target "NM_005641"; Start 10701; End 10736; Strand -; Frame .; NM_009315 TBLASTX hsp 3142 3177 46 - . Target "NM_005641"; Start 8487; End 8522; Strand -; Frame .; NM_009315 TBLASTX hsp 2915 2968 46 - . Target "NM_005641"; Start 10442; End 10495; Strand -; Frame .; NM_009315 TBLASTX hsp 3577 3639 46 - . Target "NM_005641"; Start 10736; End 10804; Strand -; Frame .; NM_009315 TBLASTX hsp 3077 3163 46 - . Target "NM_005641"; Start 6691; End 6771; Strand -; Frame .; NM_009315 TBLASTX hsp 1179 1295 46 - . Target "NM_005641"; Start 7256; End 7369; Strand -; Frame .; NM_009315 TBLASTX hsp 4040 4096 46 - . Target "NM_005641"; Start 6338; End 6394; Strand -; Frame .; NM_009315 TBLASTX hsp 2915 2968 46 - . Target "NM_005641"; Start 3495; End 3548; Strand -; Frame .; NM_009315 TBLASTX hsp 903 1046 45 - . Target "NM_005641"; Start 41; End 181; Strand -; Frame .; NM_009315 TBLASTX hsp 1882 1920 45 - . Target "NM_005641"; Start 9717; End 9755; Strand -; Frame .; NM_009315 TBLASTX hsp 2138 2248 45 - . Target "NM_005641"; Start 207; End 329; Strand -; Frame .; NM_009315 TBLASTX hsp 4556 4660 45 - . Target "NM_005641"; Start 6331; End 6435; Strand -; Frame .; NM_009315 TBLASTX hsp 2802 2915 45 - . Target "NM_005641"; Start 3675; End 3797; Strand -; Frame .; NM_009315 TBLASTX hsp 4041 4067 45 - . Target "NM_005641"; Start 812; End 838; Strand -; Frame .; NM_009315 TBLASTX hsp 3104 3148 44 - . Target "NM_005641"; Start 10530; End 10574; Strand -; Frame .; NM_009315 TBLASTX hsp 949 984 44 - . Target "NM_005641"; Start 6325; End 6360; Strand -; Frame .; NM_009315 TBLASTX hsp 2110 2166 44 - . Target "NM_005641"; Start 12002; End 12058; Strand -; Frame .; NM_009315 TBLASTX hsp 4348 4377 44 - . Target "NM_005641"; Start 2060; End 2089; Strand -; Frame .; NM_009315 TBLASTX hsp 3140 3181 43 - . Target "NM_005641"; Start 8790; End 8831; Strand -; Frame .; NM_009315 TBLASTX hsp 4529 4606 43 - . Target "NM_005641"; Start 10185; End 10262; Strand -; Frame .; NM_009315 TBLASTX hsp 1189 1383 43 - . Target "NM_005641"; Start 6370; End 6537; Strand -; Frame .; NM_009315 TBLASTX hsp 3119 3193 43 - . Target "NM_005641"; Start 4864; End 4938; Strand -; Frame .; NM_009315 TBLASTX hsp 3120 3167 43 - . Target "NM_005641"; Start 1542; End 1586; Strand -; Frame .; NM_009315 TBLASTX hsp 632 706 43 - . Target "NM_005641"; Start 9145; End 9219; Strand -; Frame .; NM_009315 TBLASTX hsp 4355 4378 43 - . Target "NM_005641"; Start 2069; End 2092; Strand -; Frame .; NM_009315 TBLASTX hsp 4352 4402 43 - . Target "NM_005641"; Start 2070; End 2120; Strand -; Frame .; NM_009315 TBLASTX hsp 4639 4668 43 - . Target "NM_005641"; Start 3306; End 3335; Strand -; Frame .; gff2aplot-2.0.orig/examples/wublast/taf6.mmhs.genomic.blastn0000664000000000000000000011736607667662610024123 0ustar rootroot00000000000000BLASTN 2.0MP-WashU [23-Sep-2001] [linux-i686-ILP32F64 14:26:09 27-Sep-2001] Copyright (C) 1996-2001 Washington University, Saint Louis, Missouri USA. All Rights Reserved. Reference: Gish, W. (1996-2001) http://blast.wustl.edu Notice: this program and its default parameter settings are optimized to find nearly identical sequences rapidly. To identify weak similarities encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX. Query= NM_009315 (5878 letters) Database: NM_005641 1 sequences; 52,737,903,427,583 total letters. Searching done Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N NM_005641 1405 0. 12 >NM_005641 Length = 12,278 Plus Strand HSPs: Score = 1405 (216.9 bits), Expect = 0., Sum P(12) = 0. Identities = 461/635 (72%), Positives = 461/635 (72%), Strand = Plus / Plus Query: 5219 GTCTTGA-CCATCCATTGC-ACTGGG-GA-CTACAAGGGAAGGTGGGAGTGGAGGGCATG 5274 |||| | |||| | | || ||| || ||||| |||| || ||| || | Sbjct: 11597 GTCTCCAGCCATAGCTGTCTACAGGGTGAACTACA--GGAACAACTT-GTTCAGG-CAGG 11652 Query: 5275 TGTCAACAGTAGATACCTGGAAAAGGATTCTGGGGGA-AGCAAGGACA-A---CATGAC- 5328 | | | || ||| | | || |||||||| || ||| || | || | Sbjct: 11653 GAGCGAGTGAAGCGTCCTCGCCA-GGCCTCTGGGGGGCAGGGAGGGCACAGGGCAAGCGG 11711 Query: 5329 CCTAGACCCTCCTTTCTCGCTCAGGTTCTGTCCCTCAGCACCTCAGCTCCTGGCTCAGGC 5388 ||| | | |||||||| | ||||| ||||||||||||||||| || || |||||||| Sbjct: 11712 CCT-GCCTTTCCTTTCTATC-CAGGTCCTGTCCCTCAGCACCTCGGCCCCCGGCTCAGGT 11769 Query: 5389 TCTACTACTACCTCTCCTGTCACCACCACGGTTCCCAGCGTGCAGCCCATCGTCAAGCTG 5448 || || || || || || ||||||||||| || |||||||||||||||||||||||| || Sbjct: 11770 TCCACCACCACTTCGCCCGTCACCACCACCGTCCCCAGCGTGCAGCCCATCGTCAAGTTG 11829 Query: 5449 GTCTCCACTGCTACCACTGCACCCCCAAGCACAGC-CCCTGCTGGTTCTGGCAGTGTTCA 5507 |||||||| || ||||| |||||||| ||||| || |||| ||||| |||| ||||| || Sbjct: 11830 GTCTCCACCGCCACCACCGCACCCCCCAGCACTGCTCCCT-CTGGTCCTGGGAGTGTCCA 11888 Query: 5508 GAAATACATTGTGGTCTCTCTTCCCCCAACAGGGGAAGGCAAAGGAGGCCCTCCTTCTCA 5567 ||| ||||| |||||||| ||||||||||||||||| |||||||||||||| | || || Sbjct: 11889 GAAGTACATCGTGGTCTCACTTCCCCCAACAGGGGAGGGCAAAGGAGGCCCCACCTCCCA 11948 Query: 5568 TCCTTCTCCAGTCCCCCCTTCATCTTCTTCACCATCCCCACTTGGGGGAAGTACCCTCTG 5627 |||||||||||| || || | | || || || |||||||| | || ||| |||| || Sbjct: 11949 TCCTTCTCCAGTTCCTCCCCCGGCATCGTCCCCGTCCCCACTCAGCGGCAGTGCCCTTTG 12008 Query: 5628 TGGGGGGAAGCAGGAAGCTGGGGACAGCCCCCCTCCAGCTCCAGGGACTCCAAAGGCTAA 5687 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || || Sbjct: 12009 TGGGGGGAAGCAGGAGGCTGGGGACAGTCCCCCTCCAGCTCCAGGGACTCCAAAAGCCAA 12068 Query: 5688 TGGCTCGCAGCCTA-CTGGACCTGGCTCTCCCCAGCCTGCTCTGTGATGTGTCACATGT- 5745 |||||| ||||| | || || ||||| || |||||||||| |||||| ||| || Sbjct: 12069 TGGCTCCCAGCCCAACT---CC-GGCTCCCCTCAGCCTGCTCCGTGATGCTCCACCTGCC 12124 Query: 5746 -GCTGACC--TCCTCTCTTGTGCAGATTCCTACACAC-T-CAA--ACA-ACCTGTGAGGG 5797 || | | | | | |||||| ||||||| | || ||| || || | Sbjct: 12125 AGCCCCCGGATTCCCACACATGCAGACATGTACACACGTGCACGTACACACATGCATGCT 12184 Query: 5798 AGGAAGGAGGAAAGGTTTTCCCCAGTGACTTTCTT 5832 | | | |||| | || | || ||| ||| Sbjct: 12185 CGCTAAGCGGAAGGAAGTTGTAGATTG-CTTCCTT 12218 Score = 1122 (174.4 bits), Expect = 0., Sum P(12) = 0. Identities = 304/387 (78%), Positives = 304/387 (78%), Strand = Plus / Plus Query: 1719 AGTTTTCTTTTTCAAGCCTGTCTC-CCATTTCACACAGGAAAAGAGAAGAAGGCACCTCC 1777 || ||||||| ||| || || ||| | |||||||| |||||||||||||| || || Sbjct: 7067 AGCTTTCTTTGTCAGACCCACCTTTCCAAT-CACACAGGGAAAGAGAAGAAGGCGCCGCC 7125 Query: 1778 CTTGCTGGAGGGGGCCCCTTTCCGCCTGAAGCCCCGCAGCATCCATGAGCTGTCTGTGGA 1837 |||||||||||||||||| || || ||||||||||| |||||||| ||| |||||||||| Sbjct: 7126 CTTGCTGGAGGGGGCCCCCTTGCGACTGAAGCCCCGGAGCATCCACGAGTTGTCTGTGGA 7185 Query: 1838 GCAGCAGCTGTATTACAAGGAGATCACGGAAGCCTGTGTGGGATCCTGTGAGGCCAAGAG 1897 ||||||||| || |||||||||||||| || ||||| ||||| ||||| ||||||||||| Sbjct: 7186 GCAGCAGCTCTACTACAAGGAGATCACCGAGGCCTGCGTGGGCTCCTGCGAGGCCAAGAG 7245 Query: 1898 AGCGGTAAGCCTGCCCTCTGGCTC-CCTTCGGTCAGAGAAAGAATCTTCCTGGAA-CAAT 1955 ||||| || ||| | ||| || | | | |||| | || |||||| | | Sbjct: 7246 GGCGGTGAGGGC-CCCACCAGCTTGCCCTGGCCCTGAGAC-GCCTCCTCCTGGGGGCCCT 7303 Query: 1956 GGGAGTTT-TCAACAG-TCAATGGCCCCACCTGACTCACTGCCC-CCTACCACAGGAAGC 2012 || || || || || |||||||||||| || ||| ||| ||||||||||| Sbjct: 7304 ATGAATTGCTCCCCACATCCCAC-CCCCACCTGACTGGCTTCCCTCCTCCCACAGGAAGC 7362 Query: 2013 TCTGCAGAGCATTGCCACGGACCCAGGGCTCTATCAGATGCTACCACGGTTCAGTACCTT 2072 ||||| ||||||||||||||||| || || ||||||||||| ||||||||||||||||| Sbjct: 7363 CCTGCAAAGCATTGCCACGGACCCTGGACTGTATCAGATGCTGCCACGGTTCAGTACCTT 7422 Query: 2073 CATCTCAGAGGGGGTGAGAGAACTGGG 2099 ||||| ||||||||||||| | || | Sbjct: 7423 TATCTCGGAGGGGGTGAGAGCA-TGAG 7448 Score = 944 (147.7 bits), Expect = 0., Sum P(12) = 0. Identities = 406/613 (66%), Positives = 406/613 (66%), Strand = Plus / Plus Query: 664 ATTTGGGGGGACTTGAAGGAGACAGGCGGCTTTAGAGTGGGGAGACAATGCACGTGTGGC 723 || | | || || |||||||||||| | ||| | | || | | | | | | Sbjct: 5482 ATGTCGAGGTGATTTGGGGAGACAGGCGGGGGGGGGGTGAGACGCCA-T-C-CTTCAG-C 5537 Query: 724 CATGCCTCCCTTGCGCTGTTTCTCATGTCCTTCTCTGTCTCTCTCCTGGTGTAGCCACTG 783 || | |||| | ||| | || | || | | |||||||||| ||||||| Sbjct: 5538 CAGGTCTCCTCCG-GCTCCCT-TCTTACCCATGCCC--CTCTCTCCTGCCACAGCCACTC 5593 Query: 784 TATGGCTTCCATGCTCAGGAGTTCATCCCTTTCCGGTTTGCCTCTGGCGGGGGCCGGGAG 843 ||||||||||| || ||||||||||| |||||||| || |||||||| |||||||||||| Sbjct: 5594 TATGGCTTCCACGCCCAGGAGTTCATTCCTTTCCGCTTCGCCTCTGGTGGGGGCCGGGAG 5653 Query: 844 CTGTACTTCTATGAAGAGAAGGAAGTGGACCTGAGTGACATCATCAACACCCCTCTGCCT 903 || ||||||||||| |||||||| || || ||||| ||||||||||| ||||||||||| Sbjct: 5654 CTTTACTTCTATGAGGAGAAGGAGGTTGATCTGAGCGACATCATCAATACCCCTCTGCCC 5713 Query: 904 CGGGTGCCTCTGGATGTCTGCCTCAAAGGTGGAGGGAGGGTAGAGCTGGGTGCCCAGGGA 963 |||||||| ||||| ||||||||||||||| | ||||||| ||||| ||||| | ||||| Sbjct: 5714 CGGGTGCCCCTGGACGTCTGCCTCAAAGGTTGGGGGAGGGGAGAGCAGGGTGGC-AGGGA 5772 Query: 964 GGAGGGGAAGCAAG-C-G-TGTGACT-GG---GAGGAACTTCACAAGAGAAGAAAGAAAC 1016 |||||| ||| | | | | |||| | || ||||| | |||||| |||||||| | Sbjct: 5773 GGAGGGAAAGGAGGACAGATGTGTGTAGGTGTGAGGAGCCTCACAATAGAAGAAAAGCTC 5832 Query: 1017 A-TCCAATATGTGAA-TGGCAAGAAGGGGACTAGGAAGGGGAATACAT-CTTCCTCCGTC 1073 | | | || || | | ||| | || |||| ||| ||||| | | Sbjct: 5833 AGTGTGAGATCCCTGGTGAGTTGCAAGGGGAGCAGGAGTGGAA-ACACGCTTCCATAG-C 5890 Query: 1074 A-GGGTCGGCTTCCCAGTGTACATACCCAGAACTCAGCTTGACGTCTTCTTTACAGCTCA 1132 | ||| | || |||| ||| ||| | | | | | | | | || | | | Sbjct: 5891 ATGGGGCAACTCCCCAATGTCCATGCGTGGCAATTCACCTT--GACACCTGC-CTTC-C- 5945 Query: 1133 TTGGCTAAGCATCGAAGGCTGC-CAGCCAGCTATACCAGAGAATCCACCCCCAGGTAAGG 1191 ||| | ||| || ||||| || | || | |||| | | | |||| | || Sbjct: 5946 TTG-C--AGC-TCATTGGCTGAGCATCGAGGGCTGCCAGCCAG-CTATCCCCGAG-AACC 5999 Query: 1192 TTTTCCTTGCCCCTTAATCTCCTT-CCCCATCC-CTGGTCCTCTAGAGCTCCTCCTACCT 1249 || || ||| |||| | ||||| || |||| |||| | | | | | ||| Sbjct: 6000 CGC-CC---CCAGGTAACCTCCATGCCCCACCCTCTGGGTCTCTGGGTCCCTTTCC-CCT 6054 Query: 1250 TCTCATCACTCCT 1262 || | || | ||| Sbjct: 6055 TC-CTTC-CACCT 6065 Score = 848 (133.3 bits), Expect = 0., Sum P(12) = 0. Identities = 230/292 (78%), Positives = 230/292 (78%), Strand = Plus / Plus Query: 4851 ATGTTAACATTTTCTTCCTGTGTCTGTTCTCTTCATAGCCTCGGCCCACACTGACCCTTT 4910 ||| | || || | ||| | || ||||| | |||| |||||||| |||||||| | Sbjct: 11198 ATGGTGCCACTTCCC-CCTTTC-CTCTTCTCCCCGCAGCCCCGGCCCACGCTGACCCTCT 11255 Query: 4911 CACAGGCCCCTCAGCCAGGCCCTCGCACGCCTGGCTTATTGAAGGTCCCTGGCTCCATTG 4970 | |||||||| ||||| ||||||||||| |||||||| ||||||| ||||||||||| | Sbjct: 11256 CGCAGGCCCCACAGCCTGGCCCTCGCACCCCTGGCTTGCTGAAGGTTCCTGGCTCCATCG 11315 Query: 4971 C-CTTGCCTGTTCAGACACTGGTGTCTGCGAGAGCTGCTGCTCCTCCTCAGCCTTCTCCT 5029 | ||| ||||| ||||||||||||||||| |||| ||||| || || |||||||| ||| Sbjct: 11316 CACTT-CCTGTCCAGACACTGGTGTCTGCACGAGCGGCTGCCCCACCACAGCCTTCCCCT 11374 Query: 5030 CCTCCAACCAAGTTTATTGTAATGTCCTCATCTTCCAGTGCCTCATCAACCCAGCAGGTA 5089 |||||||||||||||||||||||||| || || ||||| ||| |||| |||||||||||| Sbjct: 11375 CCTCCAACCAAGTTTATTGTAATGTCATCGTCCTCCAGCGCCCCATCCACCCAGCAGGTA 11434 Query: 5090 TGTGGAGCCA-GGGTGAGGG-G--TGTGATGCCCCTGGGGAAACCTCCAAGC 5137 || |||| ||| |||| | | || | |||||| | |||| ||| Sbjct: 11435 TGCAGAGCTGTGGGACAGGGAGCATCTGGAGGGCCTGGGTTA-CCTCAGAGC 11485 Score = 834 (131.2 bits), Expect = 0., Sum P(12) = 0. Identities = 292/414 (70%), Positives = 292/414 (70%), Strand = Plus / Plus Query: 2375 ATCAGACTCA-CTGACAGGGCCTGGTCTCTCTCAGGTGCATGAGCTCATTCCAGCAGTAA 2433 | |||| ||| ||| | | ||| |||| || |||| |||||||| |||||||| || | Sbjct: 8002 ACCAGAATCAGCTGTCCCGCCCTT-TCTCCCTTAGGTCCATGAGCTGATTCCAGCTGTGA 8060 Query: 2434 TGACCTGCATTGTGAGTAGACAGCTGTGCTTGCGGCCAGATGTGGACAATCACTGGGCAC 2493 |||||||||| ||||| |||||| ||||| |||| ||||||||||||||||||||||||| Sbjct: 8061 TGACCTGCATCGTGAGCAGACAGTTGTGCCTGCGACCAGATGTGGACAATCACTGGGCAC 8120 Query: 2494 TCCGGGATTTTGCTGCCCGTCTAGTGGCCCAAATCTGTAAGCATTTCAGCACAACCACCA 2553 |||| || ||||||||||| || |||||||| ||||| |||||||| ||||||||||| | Sbjct: 8121 TCCGAGACTTTGCTGCCCGCCTGGTGGCCCAGATCTGCAAGCATTTTAGCACAACCACTA 8180 Query: 2554 ACAACATCCAATCCCGAATCACTAAGACCTTTACCAAGGTAAGCCCCAAAAATGTTATCA 2613 |||||||||| ||||| ||||| |||||||| |||||||| |||| |||| | | | Sbjct: 8181 ACAACATCCAGTCCCGGATCACCAAGACCTTCACCAAGGTGAGCCAGGAAAACTTGAGCG 8240 Query: 2614 A-ATGATGCAAACCACCCCTTTAGGGCTACCTGTGAGAGAGAGAGCTTCACCCATTTGGC 2672 || ||| | | | || ||| |||| || | | || | ||| | | Sbjct: 8241 TCATT-TGCTT-C-ATCACT----GGCCACCTCTGGTTGGGGGAAGT-CACACTGGAAAC 8292 Query: 2673 A-GTGGA-A-ATGATAGTGGGAACATGGAGCCA-TGGAGAT-TG-GGCCCAAGGGACTTG 2726 | | || | | | || |||| | |||| | ||| | | | || | | | |||| Sbjct: 8293 AAGGGGGCAGAGGGAAGAGGGA-C-TGGAACTTGTGGGGGTCTAAGGGTCTTGAGGCTTG 8350 Query: 2727 AACCTTTGTGTCCTAATGTTTTGTGTTTATAGGTGATGTCAATC-CTT-CGCAG 2778 || | ||| | |||| | ||| || || ||| | ||| | ||| Sbjct: 8351 T--CTGTAATACCTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTTGCCCAG 8402 Score = 831 (130.7 bits), Expect = 0., Sum P(12) = 0. Identities = 485/768 (63%), Positives = 485/768 (63%), Strand = Plus / Plus Query: 3109 AACTCAGAA-ATCCGCCTGCCTCTGCCTCCCGA-GTGCTGGGATTAAAGGTGGGCGCCAC 3166 | ||||| ||| ||||||||| ||||||| | |||||||||||| ||||| | ||||| Sbjct: 8902 ACCTCAGGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCAC 8961 Query: 3167 CATGCCTGGTTTGAG-G-ATGGTTTTAAA-ATT--CTA--ATC-T-TCAAAAAAAAAAAA 3217 || | |||| | | | | || |||| ||| | | | | || | ||| | Sbjct: 8962 CACGTCTGGCCTCATTGTAATGTCTTAATGATTTACAAGGAAAGTGTCTATGAAAGACT- 9020 Query: 3218 TAA-TAA-T-TCAAATCTTCCTGTCTCTACCTACTATGTGCCAGGTTAGCCTTTCTAACC 3274 || | | |||| || |||| || ||| || | || ||| || || || Sbjct: 9021 TAGGTCCCTGTCAA-TCATCCTTTCAG-ACCC-CTTCATCTTAGTTTAT--TTCCTTCCC 9075 Query: 3275 CTTTTC-ATCTGGGGTTTTCTTTTTCTCTACAGAGCTGGGTCGACGAGA-A-GACTCCAT 3331 ||| | ||||| | | || | |||| |||| | | | |||||| Sbjct: 9076 CTTACAGAGCTGGG-TGGACGAGAAG---AC-GCCCTGGA-CGACTCGTTATGGCTCCAT 9129 Query: 3332 GGACAA-CTCGA-T-A--TGGCTC-CATTGC-AGGCCTAGCAGAGCTGGGACATGATGTT 3384 | || || | | | ||| | | || |||||| ||| | | ||| | Sbjct: 9130 CG-CAGGCTTGGCTGAGCTGGGACACGATGTTAGGCCTCTGGGAGGAAGAA-ATGGGGGA 9187 Query: 3385 AGTCTC-CAGGAA-GAGCTGGGGGAGGGGCAGT-TACATTTGGTGTAGGAGGAGCCTCTG 3441 | | ||| | ||| | ||||| || | ||| | | |||| | || ||| Sbjct: 9188 GGGGACACAGTCATGAGGTTATAGAGGG-CACTGTACCCCCA-TCTGGGAG-A-CC-CTG 9242 Query: 3442 GTGACCTTTTAGCCTGGGATTCTCCCCTTCCTTCCCACCAGGTGATTAAGACGCTAATTC 3501 |||||| | || | | || ||| |||| | | | ||||| || ||||| || |||| Sbjct: 9243 GTGACCCTCCGGCTTTTGCTTGTCCTTTTCCCTTCTAACAGGTTATCAAGACTCTGATTC 9302 Query: 3502 TGCCAAGGCTGCAGCAGGAAGGGGAACGGATCCGCAGTGTCTTGGATGGGCCTGTGCTGA 3561 |||| ||||||||||||||||||| |||||||||||||| |||| || |||||||||| Sbjct: 9303 TGCCCCGGCTGCAGCAGGAAGGGGAGCGGATCCGCAGTGTGCTGGACGGCCCTGTGCTGA 9362 Query: 3562 GCAACATCGACCGTATTGGAGCAGACCATGTGCAGAGCCTTCTCCTGGTGA-TGAACCCC 3620 ||||||| ||||| |||||||||||||||||||||||||| || ||||||| |||| ||| Sbjct: 9363 GCAACATTGACCGGATTGGAGCAGACCATGTGCAGAGCCTCCTGCTGGTGACTGAAGCCC 9422 Query: 3621 ACCGTACCCGCCCCTTCTTCCCACCAGCCCCACCCTCAGTTGCCA-CAAGCATGGCTACA 3679 | || ||| | ||| | || || | ||| |||| | ||||||| || Sbjct: 9423 -CTGTCCCCACACCTGC--CC-ACT-GAGACACAGGCAGTGTTTAGCAAGCATATGG-CA 9476 Query: 3680 GTGTTTTAGCAAGCACGAGGCACATCTTA-C-TCTTTTACTCAAGAGG-C-TAGCACTGT 3735 | ||||| | | | | |||||| | || | | ||| |||| | | ||| || Sbjct: 9477 -TATTTTATTCA-CTT-ACTCCCATCTTTGCCTCATGTTTTCA-GAGGACATTGCAGAGT 9532 Query: 3736 TGTG-TAC-ATGGAA-AGCAAGGCACAAGC-AGAA-AGCCTTGA-TAGTCAATAACTT-- 3787 || ||| || | || | || | | ||| || || || || ||||| Sbjct: 9533 C-TGATACTATTTTACAG-ATGGAAAGACTGAGATTAGACT-GAGTAAGAAATAAGGGGG 9589 Query: 3788 CTGGACCACACTGCCTTCATCCTGTT-TGCCT-CACTCTATG-GCTTA 3832 |||| | | || |||| ||||| | || |||||| | || || Sbjct: 9590 CTGGGCATGA-TGGCTTCTGCCTGTAATCCCAGCACTCTGGGAGCCTA 9636 Score = 741 (117.2 bits), Expect = 0., Sum P(12) = 0. Identities = 173/204 (84%), Positives = 173/204 (84%), Strand = Plus / Plus Query: 4535 CTTCTCTACAGAAACACTGTGCCCCAGTACTGGCCAAGCTGCGCCCTCCACCTGACAATC 4594 || ||| |||||||||||||| || || ||||| ||||||||||| || |||||||||| Sbjct: 10806 CTGTTCTGCAGAAACACTGTGCTCCTGTTCTGGCAAAGCTGCGCCCACCGCCTGACAATC 10865 Query: 4595 AGGATGCCTACCGGGGAGAATTTGGGTCCCTTGGGCCCCTTCTCTGTTCCCATGTGGTGA 4654 |||| ||||| |||| |||||| ||||||||||||||||| ||||| ||||| ||||| | Sbjct: 10866 AGGACGCCTATCGGGCAGAATTCGGGTCCCTTGGGCCCCTCCTCTGCTCCCAGGTGGTCA 10925 Query: 4655 AGGCCAGGGCCCAGGCTGCTCTACAAGCTCAGCAGGTCAACAGGACCACACTCACCATCA 4714 |||| |||||||||||||||| || ||||||||||||||||||||||| || ||||||| Sbjct: 10926 AGGCTCGGGCCCAGGCTGCTCTGCAGGCTCAGCAGGTCAACAGGACCACTCTGACCATCA 10985 Query: 4715 CACAGGTCAGCTGCTGAGGGAGGA 4738 | |||||| | || | | | ||| Sbjct: 10986 CGCAGGTCCGTGGCCGGGTGGGGA 11009 Score = 724 (114.7 bits), Expect = 0., Sum P(12) = 0. Identities = 184/227 (81%), Positives = 184/227 (81%), Strand = Plus / Plus Query: 1239 TCCTCCTACCTTC-TCATCACTCCTGCTGTGACCACTTTCCCACCAGCTCCCAAAGAGCA 1297 | || ||| || ||| | |||| |||||| | ||||||||||||||||||||||||| Sbjct: 6393 TTCTACTATGCTCATCACCCCTCCCGCTGTGCCTGCTTTCCCACCAGCTCCCAAAGAGCA 6452 Query: 1298 GCAGAAGGCTGAGGCCACAGAACCCCTGAAATCAGCAAAGCCAGGCCAAGAAGAAGATGG 1357 ||||||||||| ||||||||||||||||| ||||| ||||||||||| || ||||| || Sbjct: 6453 ACAGAAGGCTGAAGCCACAGAACCCCTGAAGTCAGCCAAGCCAGGCCAGGAGGAAGACGG 6512 Query: 1358 ACCCCTGAAAGGCAAAGGTCAAGGGGCAGCTGCAGCTGATGGCAAAGGTCAGTG-TCCT- 1415 ||||||||| ||||||||||||||||| | |||| || ||||||||||||| |||| Sbjct: 6513 ACCCCTGAAGGGCAAAGGTCAAGGGGCCACCACAGCCGACGGCAAAGGTCAGTCCTCCTA 6572 Query: 1416 GGCCAGGCCCCTTCCTACTCTTATCCCAAAGCCAGGTGGTCCTCAGT 1462 ||| ||||| || |||||| |||||||||| ||| | | || Sbjct: 6573 GGCTAGGCCTCTCTGGACTCTTG-CCCAAAGCCACATGGCCGTTTGT 6618 Score = 691 (109.7 bits), Expect = 0., Sum P(12) = 0. Identities = 221/299 (73%), Positives = 221/299 (73%), Strand = Plus / Plus Query: 1 GAATTCCAGCATGGCCGAGGAGAAGAAACTGAAACTCAGCAATACTGTGTTGCCCTCTGA 60 | | ||||| ||||| ||||||||||| ||||| || ||||| |||||| ||||||| || Sbjct: 5138 GGACTCCAGAATGGCTGAGGAGAAGAAGCTGAAGCTTAGCAACACTGTGCTGCCCTCGGA 5197 Query: 61 GTCCATGAAGGTGGTGGCAGAATCTATGGGCATTGCTCAGATTCAGGAGGAGACTTGCCA 120 |||||||||||||||||| ||||| |||||||| || ||||||||||||||||| ||||| Sbjct: 5198 GTCCATGAAGGTGGTGGCTGAATCCATGGGCATCGCCCAGATTCAGGAGGAGACCTGCCA 5257 Query: 121 GCTACTGACAGATGAGGTCAGCTACCGCATCAAGGAGATTGCCCAGGTAACCCT----TT 176 ||| || || ||||||||||||||||||||||| ||||| || ||||| |||| || Sbjct: 5258 GCTGCTAACGGATGAGGTCAGCTACCGCATCAAAGAGATCGCACAGGTGACCCGGCCCTT 5317 Query: 177 -TGTCCAGCTTCCCTTTGTG-CTAACACTCCAACCTCCTATGTAACTCCAGATATCCTTG 234 ||||||||| | ||| | | | | || | || || || ||| | ||| Sbjct: 5318 CTGTCCAGCTCTACATTGGGTCCATGTCACCCAGGGCCCC-GTC-CTTAGGAT-T--TTG 5372 Query: 235 AACTTCTGACCCTCCTGCCTCCACCTCCCACTGCTGGGATTGAGGTTCTAATAC-CATG 292 || || | | ||| | || | |||| | || |||| |||| || | |||| Sbjct: 5373 GGCTGATGTCTGTTCTGTCACCGAC-CCCAG-GATGCC-TTGAAGTTC--ATGCACATG 5426 Score = 654 (104.2 bits), Expect = 0., Sum P(12) = 0. Identities = 210/282 (74%), Positives = 210/282 (74%), Strand = Plus / Plus Query: 2116 ATGAGGCTCCA-AGGGAGGGGGATGACAAGGTAGGTTCATCTGAGGG-CTCTCTGTGCC- 2172 |||||| |||| || | ||| | | || | | | || | |||||| ||| ||| || Sbjct: 7444 ATGAGGTTCCACAGTGCAGGG-ACGGCAGTGGAAGCTCCTGTGAGGGTCTCCCTGCCCCA 7502 Query: 2173 TACC-ATCAACTTC-CCCTCTCCTAGGTCCGTGTGAATGTAGTTCAGAATAACCTGGCCT 2230 | || | || |||| ||||| | ||||||||||||| || |||||||| ||||||||| Sbjct: 7503 TGCCCAGCA-CTTCTCCCTCCCACAGGTCCGTGTGAACGTGGTTCAGAACAACCTGGCCC 7561 Query: 2231 TGCTTATCTACCTGATGCGTATGGTGAAGGCCCTGATGGACAACCCCACACTGTATCTAG 2290 | || ||||||||||||||||||||||| || ||||||||||||||||| || ||||||| Sbjct: 7562 TACTCATCTACCTGATGCGTATGGTGAAAGCGCTGATGGACAACCCCACGCTCTATCTAG 7621 Query: 2291 AGAAATATGTGAGTGGTCTCGCCTACCTGCTGTCTTTTGCAGGGTC-AGGGGCCCTTCTG 2349 | ||||| ||||||| || ||| | | || ||| ||||| | |||| |||| ||| Sbjct: 7622 AAAAATACGTGAGTGATCCTGCCCATC--CTCCCTTC--CAGGGACTAGGGACCCTGCTG 7677 Query: 2350 GCAACCTCACCACAGGAGGTCTGGTATCAG-ACTCACTGACA 2390 || | || |||||| ||| | |||| | | || ||| Sbjct: 7678 CCA--C-CA--ACAGGAAGTCAGTGGTCAGCAGTGGCTCACA 7714 Score = 460 (75.1 bits), Expect = 0., Sum P(13) = 0. Identities = 110/128 (85%), Positives = 110/128 (85%), Strand = Plus / Plus Query: 550 ATCTCT-TTCCCCC-CCACCCCCTAGGATGCCCTGAAGTTCATGCACATGGGGAAACGAC 607 || ||| ||| | || |||| |||||||| |||||||||||||||||||||| || | Sbjct: 5378 ATGTCTGTTCTGTCACCGACCCC-AGGATGCCTTGAAGTTCATGCACATGGGGAAGCGGC 5436 Query: 608 AGAAGCTCACTACCAGTGACATTGACTATGCATTGAAGTTAAAGAATGTGGAGGTGATTT 667 |||||||||| ||||||||||||||||| || |||||| |||||||||| |||||||||| Sbjct: 5437 AGAAGCTCACCACCAGTGACATTGACTACGCCTTGAAGCTAAAGAATGTCGAGGTGATTT 5496 Query: 668 GGGGGGAC 675 |||| ||| Sbjct: 5497 GGGGAGAC 5504 Score = 357 (59.6 bits), Expect = 1.8e-275, Sum P(12) = 1.8e-275 Identities = 201/333 (60%), Positives = 201/333 (60%), Strand = Plus / Plus Query: 5558 CTCCTTCTCATCCTTCTCCAGTCC-CCCCTTCATCT-TCTTCACCA-TCCCCACTTGGGG 5614 |||| || ||| | || || |||| || | || | || | ||| ||| || Sbjct: 11954 CTCCAGTTCCTCCCCCGGCA-TCGTCCCCGTCCCCACTCAGCGGCAGTGCCCT-TTGTGG 12011 Query: 5615 GAAGTACCCTCTGTGGGGGGA-AGCAGGAAGCTGGGGACAGCCCC-CCTCCAGCTCCAGG 5672 | | | | | ||||| || | | ||| | || ||| | | | Sbjct: 12012 GGGGAAGCAGGAGGCTGGGGACAGTCCCCCTCCAGCTCCAGGGACTCCAAAAGC-CAATG 12070 Query: 5673 GACTCCAAAGGCTAA-T--GGCTCGCAGCCTACTGGACCTGGCT-CTCC-CCAGCCTGCT 5727 | |||| | | | || | ||||| | | ||| || | | |||| || ||| || Sbjct: 12071 G-CTCCCA-GCCCAACTCCGGCTCCCCTCAGCCTGCTCCGTGATGCTCCACCTGCCAGCC 12128 Query: 5728 CTGTGATGTGTCACATGTGCTGACCTCCTCTCTTGTGCAGATTCCTACACACTCAAACAA 5787 | ||| | |||| ||| ||| | | | ||||| | | ||||| || | Sbjct: 12129 CCCGGAT-TCCCACACATGCAGACATGTACACACGTGCACGTAC--ACACATGCATGCTC 12185 Query: 5788 CCTGTGAGGGAGGAAGGAGGAAAGGTTTTCCC-CA-GTGACTTTCTTTTTAGATATTGTA 5845 || | || |||||| | | | |||| || || ||||||||||||||||||||| Sbjct: 12186 GCTAAGCGGAAGGAAGTTGTAGATTGCTTCCTTCATGTCACTTTCTTTTTAGATATTGTA 12245 Query: 5846 CAGTAAGTTCCTCAGAATAAAAGTTGGATTTGT 5878 ||| |||| ||||||||||||||| | ||||| Sbjct: 12246 CAGCCAGTTTCTCAGAATAAAAGTTTGGTTTGT 12278 Score = 253 (44.0 bits), Expect = 7.5e-228, Sum P(9) = 7.5e-228 Identities = 77/98 (78%), Positives = 77/98 (78%), Strand = Plus / Plus Query: 3086 CTTTGTAGACCAGGCTGGTCTCAAACTCAGA---A----ATCCGCCTGCCTCTGCCTCCC 3138 || ||| | |||||||||| |||||||||| | ||||||| |||| ||||||| Sbjct: 6827 CTATGTTGGCCAGGCTGGTTTCAAACTCAGCCTCATGTGATCCGCCCGCCTTGGCCTCCC 6886 Query: 3139 GA-GTGCTGGGATTAAAGGTGGGCGCCACCATGCCTGG 3175 | |||||||||||| ||||| | ||||||||||| || Sbjct: 6887 AAAGTGCTGGGATTACAGGTGTGAGCCACCATGCCAGG 6924 Score = 252 (43.9 bits), Expect = 4.6e-110, Sum P(5) = 4.6e-110 Identities = 90/123 (73%), Positives = 90/123 (73%), Strand = Plus / Plus Query: 3079 GGACTCACTTTGT-AGACCAGGCTGGTCTCAAACTCA-GA---A---ATCCGCCTGCCTC 3130 || |||| |||| || ||||| ||||||||| ||| || | ||||||| ||||| Sbjct: 1490 GGTTTCACCTTGTTAG-CCAGGATGGTCTCAATCTCCTGACCTAGTGATCCGCCCGCCTC 1548 Query: 3131 TGCCTCCCGA-GTGCTGGGATTAAAGGTGGGCGCCACCATGCCTGGTTTGAGGATGGTTT 3189 ||||||| | |||||||||||| ||| | | ||||||| | | || || || ||| Sbjct: 1549 GGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGGCCGGCCC-AGTTTGCTTT 1607 Query: 3190 TAA 3192 ||| Sbjct: 1608 TAA 1610 Score = 212 (37.9 bits), Expect = 1.3e-294, Sum P(11) = 1.3e-294 Identities = 86/124 (69%), Positives = 86/124 (69%), Strand = Plus / Plus Query: 3058 GTGTGTAGCCCTGGCTGTC-CTGGACTCACTTTGTAGACCAGGCTGG-TCTCAAACTCA- 3114 | ||| || || | || | || |||||| | | ||| ||| ||||| ||| Sbjct: 10064 GAGTGCAGTGGTG-CGATCTCAGG-CTCACT--GCA-ACCT--CTGCCTCTCAGGTTCAA 10116 Query: 3115 GAAATCCGCCTGCCTCTGCCTCCCGAGT-GCTGGGATTAAAGGTGGGCGCCACCATGCCT 3173 | ||| | | |||||| ||||||| ||| ||||||| | ||| |||||||||||||| Sbjct: 10117 GCAATTCTCATGCCTCAGCCTCCCAAGTAGCTGGGACCACAGGCACGCGCCACCATGCCT 10176 Query: 3174 GGTT 3177 || | Sbjct: 10177 GGCT 10180 Score = 205 (36.8 bits), Expect = 5.7e-108, Sum P(5) = 5.7e-108 Identities = 87/131 (66%), Positives = 87/131 (66%), Strand = Plus / Plus Query: 3083 TCACTTTGTAGACCAGGCTGGTCTCAAACTCA-GAA------ATCCGCCTGCCTCTGCCT 3135 |||| ||| | ||||| ||||||| | ||| || ||||| | ||||| |||| Sbjct: 3564 TCACCATGTTGGCCAGGATGGTCTCCATCTCTTGACCTGGTGATCCGTCCGCCTCGGCCT 3623 Query: 3136 CCCGA-GTGCTGGGATTAAAGGTGGGCGCCACCATGCCTGGTTTGAGG-ATGGTTTTAAA 3193 ||| | |||||||||||| ||||| | |||| | ||| | || || ||||| Sbjct: 3624 CCCAAAGTGCTGGGATTACAGGTGTGAGCCAACGCGCCCGACCGGATTTATTTTTTTACC 3683 Query: 3194 ATTCTAATCTT 3204 || | | || Sbjct: 3684 TTTTTTTTTTT 3694 Score = 204 (36.7 bits), Expect = 1.1e-138, Sum P(7) = 1.1e-138 Identities = 82/120 (68%), Positives = 82/120 (68%), Strand = Plus / Plus Query: 3056 CTGTGTGTAGCCCTGGCTGTC-CTGGACTCACTTTGTAGACCAGGCTGGTCTCAAACTCA 3114 ||| | || || |||| || ||||||| | | || ||| | | |||| Sbjct: 3724 CTG-GAGT-GCAATGGCGCAATCTCAACTCACT--GCAAACTCTACTGC-CG-AGGCTCA 3777 Query: 3115 -GAAATCCGCCTGCCTCTGCCTCCCGAGT-GCTGGGATTAAAGGTGGGCGCCACCATGCC 3172 | || | |||||||| ||||||| ||| |||||||||| ||| ||||||||||||| Sbjct: 3778 AGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACGCGCCACCATGCC 3837 Score = 200 (36.1 bits), Expect = 1.5e-138, Sum P(6) = 1.5e-138 Identities = 82/118 (69%), Positives = 82/118 (69%), Strand = Plus / Plus Query: 3061 TGTAGCCC--TGGCT-G-TCCTGGACTCACTTTGTAGACCAGGCTGGTCTCAAACTCA-G 3115 || || || |||| | || ||| |||||| | | ||| | || || ||| | Sbjct: 3416 TGGAGTCCAGTGGCACGATCTTGG-CTCACT--GCA-ACCTC-CACTTCCCAGGTTCAAG 3470 Query: 3116 AAATCCGCCTGCCTCTGCCTCCCGAGT-GCTGGGATTAAAGGTGGGCGCCACCATGCC 3172 || | | |||||| ||||||||||| ||||||| || ||||| | ||||||| ||| Sbjct: 3471 TGATTCTCTTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCGTGCCACCACGCC 3528 Score = 195 (35.3 bits), Expect = 2.4e-138, Sum P(6) = 2.4e-138 Identities = 49/60 (81%), Positives = 49/60 (81%), Strand = Plus / Plus Query: 3114 AGAAATCCGCCTGCCTCTGCCTCCCGAGT-GCTGGGATTAAAGGTGGGCGCCACCATGCC 3172 || || | ||||||| ||||||||||| |||| ||||| ||||| |||||||||||| Sbjct: 2801 AGTGATTCTTCTGCCTCAGCCTCCCGAGTAGCTGTGATTACAGGTGCCCGCCACCATGCC 2860 Score = 179 (32.9 bits), Expect = 3.7e-293, Sum P(11) = 3.7e-293 Identities = 103/172 (59%), Positives = 103/172 (59%), Strand = Plus / Plus Query: 3028 TTTTTTTGGTTTTTGAAACAGGATTTTTCTGTGTGTAGCCCTGGC-TGTCCTGGACTCA- 3085 ||||||| ||| ||| |||| | ||||| | || || ||| | || Sbjct: 10323 TTTTTTTTTTTTCTGAGACAGTCTCACTCTGTCACCCAAGCGGGAGTGCACTG-ATGCAA 10381 Query: 3086 -CTTTGTAGAC--CAGGCTGGTCT--CAAACT-CAGAAATCCGCCTGCCTCTGCCTCCCG 3139 || || || ||| || | | | || || | | |||| |||||| Sbjct: 10382 CCTCTGCTCACTGCAGCCTCCACCACCTGGGTTCAAGCATTCTAGTACCTCAACCTCCCC 10441 Query: 3140 AGT-GCTGGGATTAAAGGTGGGCGCCACCATGCCTGGTTTGAGGATGGTTTT 3190 ||| ||||||| || ||||| | |||||||||||||| | | || ||| Sbjct: 10442 AGTAGCTGGGACTACAGGTGCGTGCCACCATGCCTGGCTAGTTTTTGTATTT 10493 Score = 178 (32.8 bits), Expect = 0., Sum P(12) = 0. Identities = 54/74 (72%), Positives = 54/74 (72%), Strand = Plus / Plus Query: 3104 TCTCAAACTCAGAA-ATCCGCCTGCCTCTGCCTCCCGA-GTGCTGGGATTAAAGGTGGGC 3161 || | | ||||| ||| |||||||| ||||||| | |||||||||||| ||| | Sbjct: 8752 TCCCGACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACGGGTATGA 8811 Query: 3162 GCCACCATGCCTGG 3175 ||||| ||||| Sbjct: 8812 GCCACTGCACCTGG 8825 Score = 177 (32.6 bits), Expect = 1.5e-137, Sum P(6) = 1.5e-137 Identities = 47/60 (78%), Positives = 47/60 (78%), Strand = Plus / Plus Query: 3114 AGAAATCCGCCTGCCTCTGCCTCCCGAGTG-CTGGGATTAAAGGTGGGCGCCACCATGCC 3172 || ||| | |||||||| ||||||||||| |||||| || ||||| | ||||| ||| Sbjct: 2194 AGCAATTCTCCTGCCTCAGCCTCCCGAGTATCTGGGACTACAGGTGCACATCACCACGCC 2253 Score = 177 (32.6 bits), Expect = 1.5e-137, Sum P(6) = 1.5e-137 Identities = 55/72 (76%), Positives = 55/72 (76%), Strand = Plus / Plus Query: 3111 CTCA-GAAATCCGCCTGCCTCTGC--C-TCCCGAGT-GCTGGGATTAAAGGTGGGCGCCA 3165 |||| | || | |||||||| || | |||||||| || |||| || ||||| |||| Sbjct: 1390 CTCACGCCATTCTCCTGCCTCAGCAGCCTCCCGAGTAGCAGGGACTATAGGTGCCTGCCA 1449 Query: 3166 CCATGCCTGGTT 3177 |||||||||| | Sbjct: 1450 CCATGCCTGGCT 1461 Score = 172 (31.9 bits), Expect = 2.1e-202, Sum P(8) = 2.1e-202 Identities = 108/179 (60%), Positives = 108/179 (60%), Strand = Plus / Plus Query: 2757 AGGTGATGTCAATCCTTCGCAGTTAGTCTTTCTTTTTTTTTTTTTCCTTT-TTCCAGTTT 2815 |||| | || || | | | | | | ||| | ||| |||| ||||| || Sbjct: 6007 AGGTAACCTCCATGCCCCACCCTCTGGGTCTCTGGGTCCCTTTCCCCTTCCTTCCACCTT 6066 Query: 2816 TGTTTTTTTGAGACAGAGTTTCTCTGTGTAGCCCTAACTGCCCTGGAACTTGCTCTGTAG 2875 | ||||||||||||||||| || || ||| ||| ||| || | | ||| || Sbjct: 6067 T-TTTTTTTGAGACAGAGTCTCACTCTGTTGCCTGTGCTGGAGTGCAGGA-GTGCTGGAG 6124 Query: 2876 C-CAG-G-CTTGGCCTTGAACTCAGAG--ATCCAC--CCTCCTGTGAGTTCTGG-GATT 2926 ||| | || |||| |||| | | || ||||||| | |||| | |||| Sbjct: 6125 TGCAGTGGCTCAATCTTGG-CTCACTGCAAACCTGTGCCTCCTG-G-GTTCACGCGATT 6180 Score = 170 (31.6 bits), Expect = 1.3e-294, Sum P(11) = 1.3e-294 Identities = 62/88 (70%), Positives = 62/88 (70%), Strand = Plus / Plus Query: 2769 TCCTTCGCAG-TTAGTCTTTCTTTTTTTTTTTTTCCTTTTTCCAGTTTTGTTTTTTTGAG 2827 || ||| || ||||| | | |||| |||||| |||| | |||| |||||||||| Sbjct: 9981 TCATTCACACATTAGTGCC-CATGTTTTCTTTTTC-TTTT--CTTTTTT-TTTTTTTGAG 10035 Query: 2828 ACAGAGTTTCTCTGTGTAGCCCTAACTG 2855 | |||| || || |||| ||| ||| Sbjct: 10036 ATGGAGTCTCACTCTGTAACCCAGGCTG 10063 Score = 169 (31.4 bits), Expect = 3.1e-291, Sum P(11) = 3.1e-291 Identities = 55/77 (71%), Positives = 55/77 (71%), Strand = Plus / Plus Query: 3118 ATCCGCCTGCCTCTGCCTCCCGAGT-GCTGGGATTAAAGGTGGGCGCCACCATGCCTGGT 3176 || | |||||||| ||||||||||| |||||||||| ||| | ||| ||| || | Sbjct: 8633 ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGTGCCGCCACACCCAGC 8692 Query: 3177 TTGAGGATG-GTTTTAA 3192 | | || ||||| | Sbjct: 8693 TA-ATTTTGTGTTTTTA 8708 Score = 165 (30.8 bits), Expect = 1.6e-292, Sum P(11) = 1.6e-292 Identities = 49/66 (74%), Positives = 49/66 (74%), Strand = Plus / Plus Query: 3109 AACTCAGAA-ATCCGCCTGCCTCTGCCTCCCGA-GTGCTGGGATTAAAGGTGGGCGCCAC 3166 | ||||| ||| ||| ||||| ||||||| | |||||||||||| ||| | |||| Sbjct: 10246 ACCTCAGGTGATCTGCCAGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAACCAC 10305 Query: 3167 CATGCC 3172 || || Sbjct: 10306 CACACC 10311 Score = 164 (30.7 bits), Expect = 1.5e-291, Sum P(11) = 1.5e-291 Identities = 188/322 (58%), Positives = 188/322 (58%), Strand = Plus / Plus Query: 2710 TGGGCCCAAGGGACTTGA-A-CCTTTGTGTCCTAATGTTTTGTGTTTATAGGTGATGTCA 2767 || | || | || || | ||| | ||| || || || | ||| ||| ||| | Sbjct: 10244 TGACCTCAGGTGATCTGCCAGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGC-ATG--A 10300 Query: 2768 ATCCTTCGCAGTTAGTCTTTCTTTTTTTTTTTTTCCTTTTTCCAGTTTTGTTTTTTTGAG 2827 | || | || || | |||||||||||||||| || | ||| | | | | Sbjct: 10301 A-CCACCACACCCAGCCATTCTTTTTTTTTTTTTTCTGAGAC-AGTCTCACTCTGTCACC 10358 Query: 2828 --A-CAG-AGTTTCTCTG-TGTAGCC-CTAACTGCCCTGGAACTTGCTCTGTAGCCAGGC 2881 | | | ||| | ||| || | || || || | ||| | | | | | | || || Sbjct: 10359 CAAGCGGGAGTG-CACTGATGCAACCTCTG-CT-CACTGCAGCCTCCACC--A-CCTGGG 10412 Query: 2882 TTGGCCTTGAACTC-AG-AGATCCACC-CTCCTGTGAGTTCTGGGATTAAAAGGCATGTG 2938 || | | | || || | || ||| | || || || |||||| || | || ||| Sbjct: 10413 TT---CAAGCATTCTAGTACCTCAACCTCCCCAGT-AG--CTGGGACTACA-GGTGCGTG 10465 Query: 2939 CCACCACTTTGTGGC-AGCCATCGCTTTTTTGAAACAGTATACCATGTACTCCA----GG 2993 |||||| | |||| || | | ||||| || || | | ||||| || Sbjct: 10466 CCACCA-TGCCTGGCTAGTTTTTGTATTTTTAGTGGAG-ATGAGGTTT-CTCCATTTTGG 10522 Query: 2994 C-AGGC-CTTAAACTTACAGTG 3013 | |||| ||| | || | |||| Sbjct: 10523 CCAGGCTCTTGACCTCA-AGTG 10543 Score = 164 (30.7 bits), Expect = 2.2e-105, Sum P(5) = 2.2e-105 Identities = 56/82 (68%), Positives = 56/82 (68%), Strand = Plus / Plus Query: 3111 CTCAGA-AATCCGCCTGCCTCTGCCTCCCGA-GTGCTGGGATTAAAGGTGGGCGCCACCA 3168 |||| | ||||| || ||||||||| || | |||||||||||| || | | | ||| Sbjct: 913 CTCAAACAATCCCCCCACCTCTGCCTTCCAAAGTGCTGGGATTACTGGGGTGAGTTACCT 972 Query: 3169 TGCCTGGTTTGAGGATGGTTTT 3190 | ||| | | || |||| Sbjct: 973 CTCTTGGCTCCAATTTGCTTTT 994 Score = 156 (29.5 bits), Expect = 6.4e-141, Sum P(6) = 6.4e-141 Identities = 170/297 (57%), Positives = 170/297 (57%), Strand = Plus / Plus Query: 2728 ACCTTTGTGTCCTAATGTTTTGTGTTTA-TAGG-TGATGTCAA-TC-CTTCGCAGTTAGT 2783 |||| || | | || || || | ||| | || ||| || | || ||| || | | Sbjct: 929 ACCTCTGCCTTCCAAAGTGCTGGGATTACTGGGGTGA-GTTACCTCTCTTGGCTCCAA-T 986 Query: 2784 CTTTCTTTTTTTTTTTTTCCTTTTTCCAGTTTTGTTTTTTTGAGACAGAGTTTCTCTGT- 2842 || |||||||||||||| | ||| | | | | | ||| | | || Sbjct: 987 -TTGCTTTTTTTTTTTTTTTGAGATGGAGTCTCTCTCTATCGCC-CAG-GCTGGAGTGCA 1043 Query: 2843 GTAGCCCTAACT-GC--C-CTGGAACTTGCTCTGTAGCCAGGCTTGGCCTTGAACTCAGA 2898 || || | | || | | ||| ||| | | || | || || | | | ||| | Sbjct: 1044 GTGGCACGATCTCGGTTCACTGCAACCTCCGCT-T--CCTGGTTCAAGCG-GTTCTCCCA 1099 Query: 2899 GATCCACCCTCCTGTGAGTTCTGGGATTAAAAGGCATGTGCCACCACTTTGTGGC-AGCC 2957 || | ||||| || |||||| || | ||| ||||||| | | ||| | Sbjct: 1100 CCTC-AGCCTCCCA-GATAGCTGGGACTACA-GGCGCCCGCCACCA-TGTCTGGTTAATT 1155 Query: 2958 ATCGCTTTTTTG-AAA----CAG--TAT-ACCATGTACTCCAGGCAGGCCTTAAACT 3006 | | ||||| ||| ||| | | ||||||| ||||| || || |||| Sbjct: 1156 TTTGTGTTTTTACAAAAAGACAGGGTTTCACCATGTTGGCCAGGGTGGTCTCGAACT 1212 Score = 151 (28.7 bits), Expect = 7.5e-228, Sum P(9) = 7.5e-228 Identities = 51/68 (75%), Positives = 51/68 (75%), Strand = Plus / Plus Query: 2788 CTTTTTTTTTTTTTCCTTTTTCCAGTTTTGTTTTTTTGAGACAGAGTTTCTCTGTGTAGC 2847 | ||| |||| |||||||||| |||||||||| |||||||||| || || ||| | Sbjct: 6612 CGTTTGTTTTGTTTCCTTTTT----TTTTGTTTTT--GAGACAGAGTCTCACTCTGTCAC 6665 Query: 2848 CCTAACTG 2855 || ||| Sbjct: 6666 CCAGGCTG 6673 Score = 150 (28.6 bits), Expect = 8.0e-198, Sum P(8) = 8.0e-198 Identities = 40/51 (78%), Positives = 40/51 (78%), Strand = Plus / Plus Query: 3118 ATCCGCCTGCCTCTGCCTCCCGA-GTGCTGGGATTAAAGGTGGGCGCCACC 3167 |||| || |||| ||||||| | |||||||||||| ||| | |||||| Sbjct: 6314 ATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACC 6364 Score = 150 (28.6 bits), Expect = 0., Sum P(13) = 0. Identities = 72/111 (64%), Positives = 72/111 (64%), Strand = Plus / Plus Query: 357 CCCGTATTTC-TCAGGGT-CAGAGATGAGTATCTCTTCTTAGTGGGGCATTGGTGGGGTA 414 || | | | | |||| | || | || | | |||| | | ||||| | ||| | Sbjct: 1748 CCTGGAATACATCAGTGAACATA-ATAAAGAGCTCTG-TCGGCCGGGCACAG-TGGCTCA 1804 Query: 415 TGCCTTTAATCCCAGCACTT-GGTAGTCAGAGGCAGGG-GGAATCTCTTGA 463 |||| |||||||||||||| || || | ||| ||| |||| | | ||| Sbjct: 1805 CGCCTGTAATCCCAGCACTTTGGGAGGCC-AGGGTGGGTGGAA-CACCTGA 1853 Score = 149 (28.4 bits), Expect = 8.1e-292, Sum P(11) = 8.1e-292 Identities = 55/76 (72%), Positives = 55/76 (72%), Strand = Plus / Plus Query: 3082 CTCACTTTGTAGACCAGGCTGGTCTCAAACTCA-GAAATCCGCCTGCCTCTGCCTCCCGA 3140 ||| ||| | | ||||||| | | | |||| | |||| || |||| ||||||| | Sbjct: 10512 CTCCATTT-TGG-CCAGGCTC-T-TGAC-CTCAAGTGATCCACCCACCTCAGCCTCCCAA 10566 Query: 3141 GTGCTGGGATTAAAGG 3156 |||||||||| | ||| Sbjct: 10567 GTGCTGGGAT-ACAGG 10581 Score = 149 (28.4 bits), Expect = 2.9e-141, Sum P(7) = 2.9e-141 Identities = 67/100 (67%), Positives = 67/100 (67%), Strand = Plus / Plus Query: 2710 TGGGCCCAAGGGA-CTTGA-ACCTTTGTGTCCTAATGTTTTGTGTTTATAGG--TGATGT 2765 ||||| |||| || | | ||||| | ||| | || ||| ||| ||| ||| | Sbjct: 4552 TGGGCTCAAGCGATCCTCCTACCTTGGGCTCCCAGAGTGTTGGAATTACAGGCATGA-GC 4610 Query: 2766 CAATCCTTCGCAGTT-AGTCTTTCTTTTTTTTTTTTTCCT 2804 || | | |||| || ||| |||||||||||||||| Sbjct: 4611 CACTAGGCC-CAGTCCAGA-TTT-TTTTTTTTTTTTTCCT 4647 Score = 142 (27.4 bits), Expect = 2.7e-140, Sum P(6) = 2.7e-140 Identities = 48/65 (73%), Positives = 48/65 (73%), Strand = Plus / Plus Query: 2791 TTTTTTTTTTTCCTTTTTCCAGTTTTGTTTTTTTGAGACAGAGTTTCTCTGTGTAGCCCT 2850 ||| |||||| ||||| |||| ||||||||||||||||| | || ||| |||| Sbjct: 1283 TTTGCTTTTTTTGTTTTT----TTTT-TTTTTTTGAGACAGAGTCTGGCTCTGTTGCCCA 1337 Query: 2851 AACTG 2855 ||| Sbjct: 1338 GGCTG 1342 Score = 140 (27.1 bits), Expect = 7.4e-141, Sum P(7) = 7.4e-141 Identities = 36/46 (78%), Positives = 36/46 (78%), Strand = Plus / Plus Query: 2797 TTTTTCCTTTTTCCAGTTTTGTTTTTTTGAGACAGAGTTTCTCTGT 2842 ||| | |||| || |||| ||||||||||||||||| ||||| Sbjct: 3670 TTTATTTTTTTACCTTTTTTTTTTTTTTGAGACAGAGTCCATCTGT 3715 Score = 139 (26.9 bits), Expect = 3.7e-140, Sum P(6) = 3.7e-140 Identities = 107/191 (56%), Positives = 107/191 (56%), Strand = Plus / Plus Query: 2727 AACCTTTGTGTCCTAATGTTTTGTGTTTATAGGTGATGTCAATCCTTCGCA-GTTAGTCT 2785 | ||| ||| ||| | | | | || | | |||| |||| | | | || || Sbjct: 605 ACCCTACCTGTACTACTCCTAAGCAGT-ATTGAT-ATGTTAATCTTCCTAATGTCCAACT 662 Query: 2786 TTCTTTTTTTTTTTTTCCTTTTTCCAGTTTTGTTTTTTTGAGACAGAGTTTCTCTGTGTA 2845 | | ||| ||||| ||| |||||||||||||| ||||| | ||| Sbjct: 663 GCAAGTGTGCCACTTTAATTTTTTTTTGTTT-TTTTTTTGAGACAGGGTTTCCGTCTGTT 721 Query: 2846 GCCCTAACTGCCCTGGAACTTGCTC--TGTAGCCAGGCTTG-GCCTTGAACTCAG-AGAT 2901 ||| ||| || | | || | | | | | || |||| ||||| || | Sbjct: 722 ACCCAGGCTGTTGTGCAG-TGGCACCATCTTGGCTCACTGCAGCCTCCAACTCCTCAGTT 780 Query: 2902 CCACCC-TCCT 2911 | | | |||| Sbjct: 781 CAAGCGATCCT 791 Score = 137 (26.6 bits), Expect = 0., Sum P(12) = 0. Identities = 43/61 (70%), Positives = 43/61 (70%), Strand = Plus / Plus Query: 2804 TTTTTCCAGTTTTGTTTTTTTGAGACAGAGTTTCTCTGTG-TAGCCCTAACTGCCCTGGA 2862 ||||| |||||||||||||||| ||||||| || | | |||| ||| || | Sbjct: 8525 TTTTTTTGTTTTTGTTTTTTTGAGATGGAGTTTCGCTCTTCTTGCCCAGGCTGGAGTGCA 8584 Query: 2863 A 2863 | Sbjct: 8585 A 8585 Score = 132 (25.9 bits), Expect = 2.3e-133, Sum P(7) = 2.3e-133 Identities = 42/57 (73%), Positives = 42/57 (73%), Strand = Plus / Plus Query: 399 GGGCATTGGTGGGGTATGCCTTTAATCCCAGCACT-TGGTAGTC-AGAGGCAGGGGG 453 |||||| | ||| | ||||| ||||||||||||| ||| || | || | | | || Sbjct: 9592 GGGCAT-GATGGCTTCTGCCTGTAATCCCAGCACTCTGGGAGCCTAGGAGTATGAGG 9647 Score = 128 (25.3 bits), Expect = 0., Sum P(11) = 0. Identities = 90/148 (60%), Positives = 90/148 (60%), Strand = Plus / Plus Query: 2811 AGTTTTGT-TTTTT--T-GAGACAGAGTTTCTCTGTGTAGCCCTAAC-TGCCCTGGAACT 2865 | |||||| ||||| | ||||||||||||| | ||| | | || || |||||||| Sbjct: 8839 ATTTTTGTATTTTTAGTAGAGACAGAGTTTCACCATGTTGAC-TAGGGTGGTCTGGAACT 8897 Query: 2866 TGCTCTGTAGC-CAGGCT-TG-GCCTTGAACTCAGAGATCCACCCTCCTGTGAGTTCTGG 2922 | ||| | | |||| | |||| | ||| | ||| | ||| || | | || Sbjct: 8898 --C-CTG-ACCTCAGGTGATCTGCCT-GC-CTCGGCCTCCCAAAGTGCTGGGATTACAGG 8951 Query: 2923 GATTAAAAGGCATGTGCCACCACTTTGT 2950 | | || || || | |||| Sbjct: 8952 TGTGAGCCACCACGTCTGGCCTCATTGT 8979 Score = 127 (25.1 bits), Expect = 1.3e-139, Sum P(6) = 1.3e-139 Identities = 139/242 (57%), Positives = 139/242 (57%), Strand = Plus / Plus Query: 2783 TCTTTCTTTTTTTTTTTTTCCTTTTTCC-AGTTTTGTTTTTTTGAGACAGAGTTTC-T-C 2839 | ||| ||||||||||||| | | ||| | | | | ||| ||| | | | Sbjct: 1290 TTTTTGTTTTTTTTTTTTTTTTGAGACAGAGTCTGGCTCTGTTGCC-CAGGCTGGAGTGC 1348 Query: 2840 TGTGTAGCCCTAACTGC-C-CTGGAACTTGCTCTGTAGCCAGGCTTG-GCC-TTGAACTC 2895 ||| || | | || | ||| || | | | | || |||| ||| || || Sbjct: 1349 AGTGGTGCGATCTCGGCTCACTGCAAGCTCCGCC-TC-CCGGGCTCACGCCATTCTCCTG 1406 Query: 2896 AGAGATCCACCCTCCTGTG-AGTTCTGGGATTAAAAGGCATGTGCCACCACTTTGTGGC- 2953 | | | ||||| | | || | |||| || | || |||||||| | |||| Sbjct: 1407 CCTCAGC-AGCCTCCCGAGTAG--CAGGGACTATA-GGTGCCTGCCACCA-TGCCTGGCT 1461 Query: 2954 -AGCCAT-CGCTTTTTT-G-A-A-AC-AG-TAT-ACCATGTACTCCAGGCAGGCCTTAAA 3004 | | | |||||| | | | || || | | ||| ||| ||||| || || || Sbjct: 1462 AATTTTTTCTATTTTTTAGTAGAGACGAGGTTTCACCTTGTTAGCCAGGATGGTCTCAAT 1521 Query: 3005 CT 3006 || Sbjct: 1522 CT 1523 Parameters: ctxfactor=2.00 E=10 Query ----- As Used ----- ----- Computed ---- Strand MatID Matrix name Lambda K H Lambda K H +1 0 +5,-4 0.192 0.173 0.357 same same same Q=10,R=10 0.104 0.0151 0.0600 n/a n/a n/a -1 0 +5,-4 0.192 0.173 0.357 same same same Q=10,R=10 0.104 0.0151 0.0600 n/a n/a n/a Query Strand MatID Length Eff.Length E S W T X E2 S2 +1 0 5878 5878 10. 331 11 n/a 73 0.024 82 110 0.023 124 -1 0 5878 5878 10. 331 11 n/a 73 0.024 82 110 0.023 124 Statistics: Database: NM_005641 Title: NM_005641 Posted: 6:31:35 PM CET Dec 19, 2002 Created: 6:31:17 PM CET Dec 19, 2002 Format: XDF-1 # of letters in database: 52,737,903,427,583 # of sequences in database: 1 # of database sequences satisfying E: 1 No. of states in DFA: 256 (256 KB) Total size of DFA: 507 KB (2171 KB) Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00 No. of threads or processors used: 1 Search cpu time: 0.05u 0.00s 0.05t Elapsed: 00:00:00 Total cpu time: 0.07u 0.01s 0.08t Elapsed: 00:00:00 Start: Thu Dec 19 18:31:23 2002 End: Thu Dec 19 18:31:23 2002 gff2aplot-2.0.orig/examples/mhcregion/0000775000000000000000000000000007667662612017751 5ustar rootroot00000000000000gff2aplot-2.0.orig/examples/mhcregion/index.html0000664000000000000000000004663207667662612021761 0ustar rootroot00000000000000 GFF2APLOT HOWTOs: SIM output for a syntenic sequences pair.
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SIM Alignment on a Multigenic Syntenic Region
 
   

Summary

We will visualize the output produced by SIM on the genomic MHC syntenic region between human and mouse. We will use a filter to convert its output into GFF, the C program ali2gff is included in the gff2aplot distribution.
Once we have generated the whole genomic region figure, we will zoom into a single gene annotation. This will illustrate how you can expand a given area from your pictures, to highlight single features on multigenic annotation plots for instance.

NOTE.- For the sake of clarity, we are going to use long names for the comand-line switches. See the command-line help if you prefer short names for those cases in which a short name is available.
Bitmaps for the examples were generated as PNGs (Portable Network Graphics). If your browser is not ready for such format yet, you can visualize the PDF or PS versions by clicking on the links below each snapshot. Links to customization files, log files, GFF input files and output PostScript figures, are also available on each command-line shown.

Contents


Parsing SIM Output


    
$BIN/ali2gff -x "X87344"             \
             -y "AF100956+AF027865"  \
                hs-mm.sim            \
              > hs-mm.sim.gff
  

Raw Output


Default SIM plot
 [PNG] [PS] [PDF] 
    
gff2aplot.pl                           \
    --verbose                          \
    --percent-box-label "Identity%"    \
    --title "Human/Mouse MHCII Region" \
    --subtitle ""                      \
    -- hs.gff                          \
       mm.gff                          \
       hs-mm.sim.gff                   \
     > hs-mm.sim.ps                    \
    2> hs-mm.sim.log
  

Command-line Customization
 [PNG] [PS] [PDF] 
    
gff2aplot.pl                                         \
     --verbose                                       \
     --percent-box-label "Identity%"                 \
     --show-percent-box                              \
     --title "Human/Mouse MHCII Region"              \
     --subtitle ""                                   \
     --feature-var "seqbounds::alignment_color=grey" \
     --feature-var "alignment::alignment_color=red"  \
     --feature-var "fragment::alignment_color=green" \
     --strand-var "..::strand_layer=0"               \
     --strand-var "++::strand_layer=2"               \
     -- hs.gff                                       \
        mm.gff                                       \
        hs-mm.sim.gff                                \
      > hs-mm.sim2.ps                                \
     2> hs-mm.sim2.log
  

Finishing Plot for MHC Region


Empty Plot
 [PNG] [PS] [PDF] 
    
gff2aplot.pl                            \
    --verbose                           \
    --percent-box-label "Identity%"     \
    --show-percent-box                  \
    --title  "Human/Mouse MHCII Region" \
    --subtitle ""                       \
    --x-label "Human" --y-label "Mouse" \
    --custom-filename mhc2.rc           \
    --custom-filename mhc2spc.rc        \
    -- hs.gff                           \
       mm.gff                           \
       hs-mm.sim.gff                    \
     > hs-mm.sim.ini.ps                 \
    2> hs-mm.sim.ini.log
  

Zooming Into the LMP2 Gene Region


Marking area to be zoomed
 [PNG] [PS] [PDF] 
    
gff2aplot.pl                                       \
    --verbose                                      \
    --percent-box-label "Identity%"                \
    --show-percent-box                             \
    --title  "Human/Mouse MHCII Region"            \
    --subtitle "Zooming into the LMP2 gene region" \
    --zoom-area                                    \
    --end-x-sequence 6500                          \
    --end-y-sequence 6500                          \
    --x-label "Human X87344"                       \
    --y-label "Mouse AF100956+AF027865"            \
    --custom-filename mhc2.rc                      \
    --custom-filename mhc2labels.rc                \
    -- hs.gff                                      \
       mm.gff                                      \
       hs-mm.sim.gff                               \
     > hs-mm.sim.zbox.ps                           \
    2> hs-mm.sim.zbox.log
  

Zooming into LMP2 region
 [PNG] [PS] [PDF] 
    
gff2aplot.pl                                       \
    --verbose                                      \
    --percent-box-label "Identity%"                \
    --show-percent-box                             \
    --title  "Human/Mouse MHCII Region"            \
    --subtitle "Zooming into the LMP2 gene region" \
    --zoom                                         \
    --end-x-sequence 6500                          \
    --end-y-sequence 6500                          \
    --x-label "Human"                              \
    --y-label "Mouse"                              \
    --custom-filename mhc2.rc                      \
    --custom-filename mhc2labels.rc                \
    --custom-filename mhc2+sgp1.rc                 \
    -- hs.gff                                      \
       mm.gff                                      \
       hs-mm.sgp1.gff                              \
       hs-mm.sim.gff                               \
     > hs-mm.sim.zoom.ps                           \
    2> hs-mm.sim.zoom.log
  

  
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gff2aplot-2.0.orig/examples/mhcregion/hs.gff0000664000000000000000000000376107667662611021055 0ustar rootroot00000000000000##gff genbank X87344 genbank polya 879 884 0.5 - 2 "polyA site" #X87344 genbank text 879 884 0.5 - 2 "polyA site" X87344 genbank 3'-utr 885 915 0.5 - 2 LMP2:6 X87344 genbank Terminal 916 1043 0.500000 - 2 LMP2:6 X87344 genbank Internal 1943 2084 0.500000 - 2 LMP2:5 X87344 genbank Internal 2314 2443 0.500000 - 0 LMP2:4 X87344 genbank Internal 3054 3185 0.500000 - 1 LMP2:3 X87344 genbank Internal 4244 4311 0.500000 - 0 LMP2:2 X87344 genbank First 6160 6219 0.500000 - 0 LMP2:1 X87344 genbank First 6813 7410 0.500000 + 0 TAP1:1 X87344 genbank Internal 7947 8061 0.500000 + 2 TAP1:2 X87344 genbank Internal 8210 8340 0.500000 + 2 TAP1:3 X87344 genbank Internal 9300 9505 0.500000 + 1 TAP1:4 X87344 genbank Internal 9932 10129 0.500000 + 1 TAP1:5 X87344 genbank Internal 11331 11459 0.500000 + 0 TAP1:6 X87344 genbank Internal 11609 11797 0.500000 + 0 TAP1:7 X87344 genbank Internal 12357 12530 0.500000 + 0 TAP1:8 X87344 genbank Internal 12774 12936 0.500000 + 0 TAP1:9 X87344 genbank Internal 13245 13381 0.500000 + 2 TAP1:10 X87344 genbank Terminal 14664 14870 0.500000 + 1 TAP1:11 X87344 genbank First 16453 16599 0.500000 + 0 LMP7:1 X87344 genbank Internal 17360 17507 0.500000 + 0 LMP7:2 X87344 genbank Internal 17666 17777 0.500000 + 2 LMP7:3 X87344 genbank Internal 18186 18315 0.500000 + 2 LMP7:4 X87344 genbank Internal 18714 18918 0.500000 + 2 LMP7:5 X87344 genbank Terminal 19402 19490 0.500000 + 2 LMP7:6 X87344 genbank First 22217 22709 0.500000 + 1 TAP2:1 X87344 genbank Internal 22799 22913 0.500000 + 2 TAP2:2 X87344 genbank Internal 24677 24807 0.500000 + 2 TAP2:3 X87344 genbank Internal 25091 25296 0.500000 + 1 TAP2:4 X87344 genbank Internal 27626 27823 0.500000 + 1 TAP2:5 X87344 genbank Internal 27989 28117 0.500000 + 0 TAP2:6 X87344 genbank Internal 29644 29832 0.500000 + 0 TAP2:7 X87344 genbank Internal 30010 30183 0.500000 + 0 TAP2:8 X87344 genbank Internal 30361 30520 0.500000 + 0 TAP2:9 X87344 genbank Internal 30914 31050 0.500000 + 2 TAP2:10 X87344 genbank Terminal 31416 31544 0.500000 + 1 TAP2:11 gff2aplot-2.0.orig/examples/mhcregion/mhc2.rc0000664000000000000000000000143507667662611021132 0ustar rootroot00000000000000# # L # show_percent_box=on aplot_score_range=0..1 # percent_box_score_range=0..1 major_tickmark_score=0.25 minor_tickmark_score=0.05 zoom_area_mark_color=violet zoom_area_fill_color=paleviolet # # G # *::group_shape=arrow /.*polyA.*/::group_shape=none /.*polyA.*/::show_group_label=off # # F # *::ribbon_style=ribbons seqbounds::hide=on alignment::hide=on fragment::alignment_scale_color=on fragment::feature_color=black 3'-utr::feature_color=grey 3'-utr::show_ribbons=off polya::feature_color=grey polya::show_ribbons=off First::feature_color=lightgreen First::show_ribbons=on First::ribbon_color=palegreen Internal::feature_color=lightgreen Internal::show_ribbons=on Internal::ribbon_color=palegreen Terminal::feature_color=lightgreen Terminal::show_ribbons=on Terminal::ribbon_color=palegreen gff2aplot-2.0.orig/examples/mhcregion/hs-mm.sim.gff0000664000000000000000000024217707667662611022261 0ustar rootroot00000000000000##gff-version 2 ##source-version ali2gff ##date Jun/03/2003 16:41:22 ## ## ali2gff -x X87344 -y AF100956+AF027865 hs-mm.sim #name1:name2 source feature beg1:beg2 end1:end2 score strand frame group comment X87344:AF100956+AF027865 sim96_LIN seqbounds 1:1 32000:35000 . . . X87344:AF100956+AF027865 sim96_LIN alignment 863:804 19762:20115 18340.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 863:804 890:831 0.790 +:+ .:. ## cumulative nmp: 0.001 X87344:AF100956+AF027865 sim96_LIN fragment 892:832 1055:995 0.850 +:+ .:. ## cumulative nmp: 0.008 X87344:AF100956+AF027865 sim96_LIN fragment 1057:996 1072:1011 0.810 +:+ .:. ## cumulative nmp: 0.009 X87344:AF100956+AF027865 sim96_LIN fragment 1073:1019 1089:1035 0.650 +:+ .:. ## cumulative nmp: 0.010 X87344:AF100956+AF027865 sim96_LIN fragment 1095:1036 1137:1078 0.600 +:+ .:. ## cumulative nmp: 0.011 X87344:AF100956+AF027865 sim96_LIN fragment 1141:1079 1169:1107 0.620 +:+ .:. ## cumulative nmp: 0.012 X87344:AF100956+AF027865 sim96_LIN fragment 1224:1108 1254:1138 0.710 +:+ .:. ## cumulative nmp: 0.013 X87344:AF100956+AF027865 sim96_LIN fragment 1272:1139 1292:1159 0.710 +:+ .:. ## cumulative nmp: 0.014 X87344:AF100956+AF027865 sim96_LIN fragment 1293:1164 1316:1187 0.710 +:+ .:. ## cumulative nmp: 0.015 X87344:AF100956+AF027865 sim96_LIN fragment 1317:1193 1322:1198 0.830 +:+ .:. ## cumulative nmp: 0.015 X87344:AF100956+AF027865 sim96_LIN fragment 1414:1199 1435:1220 0.590 +:+ .:. ## cumulative nmp: 0.016 X87344:AF100956+AF027865 sim96_LIN fragment 1506:1221 1533:1248 0.570 +:+ .:. ## cumulative nmp: 0.017 X87344:AF100956+AF027865 sim96_LIN fragment 1696:1249 1773:1326 0.680 +:+ .:. ## cumulative nmp: 0.019 X87344:AF100956+AF027865 sim96_LIN fragment 1774:1330 1803:1359 0.670 +:+ .:. ## cumulative nmp: 0.020 X87344:AF100956+AF027865 sim96_LIN fragment 1804:1364 1830:1390 0.700 +:+ .:. ## cumulative nmp: 0.021 X87344:AF100956+AF027865 sim96_LIN fragment 1831:1456 1845:1470 0.670 +:+ .:. ## cumulative nmp: 0.022 X87344:AF100956+AF027865 sim96_LIN fragment 1846:1623 1916:1693 0.790 +:+ .:. ## cumulative nmp: 0.025 X87344:AF100956+AF027865 sim96_LIN fragment 1917:1695 2088:1866 0.830 +:+ .:. ## cumulative nmp: 0.032 X87344:AF100956+AF027865 sim96_LIN fragment 2089:1868 2108:1887 0.750 +:+ .:. ## cumulative nmp: 0.033 X87344:AF100956+AF027865 sim96_LIN fragment 2109:1891 2130:1912 0.640 +:+ .:. ## cumulative nmp: 0.034 X87344:AF100956+AF027865 sim96_LIN fragment 2131:1936 2163:1968 0.480 +:+ .:. ## cumulative nmp: 0.035 X87344:AF100956+AF027865 sim96_LIN fragment 2164:2011 2180:2027 0.760 +:+ .:. ## cumulative nmp: 0.035 X87344:AF100956+AF027865 sim96_LIN fragment 2181:2057 2194:2070 0.790 +:+ .:. ## cumulative nmp: 0.036 X87344:AF100956+AF027865 sim96_LIN fragment 2195:2134 2283:2222 0.670 +:+ .:. ## cumulative nmp: 0.039 X87344:AF100956+AF027865 sim96_LIN fragment 2290:2223 2482:2415 0.730 +:+ .:. ## cumulative nmp: 0.046 X87344:AF100956+AF027865 sim96_LIN fragment 2483:2419 2493:2429 0.910 +:+ .:. ## cumulative nmp: 0.047 X87344:AF100956+AF027865 sim96_LIN fragment 2501:2430 2509:2438 0.670 +:+ .:. ## cumulative nmp: 0.047 X87344:AF100956+AF027865 sim96_LIN fragment 2510:2444 2533:2467 0.670 +:+ .:. ## cumulative nmp: 0.048 X87344:AF100956+AF027865 sim96_LIN fragment 2541:2468 2601:2528 0.640 +:+ .:. ## cumulative nmp: 0.050 X87344:AF100956+AF027865 sim96_LIN fragment 2602:2536 2637:2571 0.530 +:+ .:. ## cumulative nmp: 0.051 X87344:AF100956+AF027865 sim96_LIN fragment 2641:2572 2705:2636 0.650 +:+ .:. ## cumulative nmp: 0.053 X87344:AF100956+AF027865 sim96_LIN fragment 2706:2640 2741:2675 0.860 +:+ .:. ## cumulative nmp: 0.055 X87344:AF100956+AF027865 sim96_LIN fragment 2744:2676 2763:2695 0.900 +:+ .:. ## cumulative nmp: 0.056 X87344:AF100956+AF027865 sim96_LIN fragment 2764:2697 2826:2759 0.670 +:+ .:. ## cumulative nmp: 0.058 X87344:AF100956+AF027865 sim96_LIN fragment 2832:2760 2850:2778 0.580 +:+ .:. ## cumulative nmp: 0.059 X87344:AF100956+AF027865 sim96_LIN fragment 2873:2779 2884:2790 0.580 +:+ .:. ## cumulative nmp: 0.059 X87344:AF100956+AF027865 sim96_LIN fragment 2885:2792 2907:2814 0.830 +:+ .:. ## cumulative nmp: 0.060 X87344:AF100956+AF027865 sim96_LIN fragment 2908:2816 2941:2849 0.500 +:+ .:. ## cumulative nmp: 0.061 X87344:AF100956+AF027865 sim96_LIN fragment 2972:2850 2981:2859 0.800 +:+ .:. ## cumulative nmp: 0.061 X87344:AF100956+AF027865 sim96_LIN fragment 2998:2860 3006:2868 0.780 +:+ .:. ## cumulative nmp: 0.062 X87344:AF100956+AF027865 sim96_LIN fragment 3009:2869 3209:3069 0.820 +:+ .:. ## cumulative nmp: 0.070 X87344:AF100956+AF027865 sim96_LIN fragment 3210:3166 3265:3221 0.480 +:+ .:. ## cumulative nmp: 0.072 X87344:AF100956+AF027865 sim96_LIN fragment 3266:3231 3286:3251 0.670 +:+ .:. ## cumulative nmp: 0.073 X87344:AF100956+AF027865 sim96_LIN fragment 3319:3252 3331:3264 0.690 +:+ .:. ## cumulative nmp: 0.073 X87344:AF100956+AF027865 sim96_LIN fragment 3346:3265 3363:3282 0.610 +:+ .:. ## cumulative nmp: 0.074 X87344:AF100956+AF027865 sim96_LIN fragment 3364:3307 3385:3328 0.550 +:+ .:. ## cumulative nmp: 0.074 X87344:AF100956+AF027865 sim96_LIN fragment 3404:3329 3430:3355 0.590 +:+ .:. ## cumulative nmp: 0.075 X87344:AF100956+AF027865 sim96_LIN fragment 3437:3356 3455:3374 0.630 +:+ .:. ## cumulative nmp: 0.076 X87344:AF100956+AF027865 sim96_LIN fragment 3464:3375 3510:3421 0.510 +:+ .:. ## cumulative nmp: 0.077 X87344:AF100956+AF027865 sim96_LIN fragment 3518:3422 3527:3431 0.700 +:+ .:. ## 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X87344:AF100956+AF027865 sim96_LIN fragment 19046:3724 19081:3759 0.670 +:+ .:. ## cumulative nmp: 0.395 X87344:AF100956+AF027865 sim96_LIN fragment 19083:3760 19107:3784 0.880 +:+ .:. ## cumulative nmp: 0.756 X87344:AF100956+AF027865 sim96_LIN alignment 8422:33675 8541:33738 248.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8422:33675 8449:33702 0.930 +:+ .:. ## cumulative nmp: 0.283 X87344:AF100956+AF027865 sim96_LIN fragment 8506:33703 8541:33738 0.750 +:+ .:. ## cumulative nmp: 0.577 X87344:AF100956+AF027865 sim96_LIN alignment 8424:33675 8541:33736 248.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8424:33675 8449:33700 0.960 +:+ .:. ## cumulative nmp: 0.277 X87344:AF100956+AF027865 sim96_LIN fragment 8506:33701 8541:33736 0.750 +:+ .:. ## cumulative nmp: 0.577 X87344:AF100956+AF027865 sim96_LIN alignment 10848:26928 10917:27004 246.000 +:+ .:. 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X87344:AF100956+AF027865 sim96_LIN fragment 13146:13368 13198:13420 0.720 +:+ .:. ## cumulative nmp: 0.720 X87344:AF100956+AF027865 sim96_LIN alignment 13146:13129 13198:13181 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:13129 13198:13181 0.720 +:+ .:. ## cumulative nmp: 0.720 X87344:AF100956+AF027865 sim96_LIN alignment 13146:12859 13190:12903 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:12859 13190:12903 0.760 +:+ .:. ## cumulative nmp: 0.760 X87344:AF100956+AF027865 sim96_LIN alignment 8505:33676 8541:33712 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8505:33676 8541:33712 0.810 +:+ .:. ## cumulative nmp: 0.810 X87344:AF100956+AF027865 sim96_LIN alignment 3:22919 41:22957 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3:22919 41:22957 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 1542:26928 1621:27033 228.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1542:26928 1575:26961 0.760 +:+ .:. ## cumulative nmp: 0.278 X87344:AF100956+AF027865 sim96_LIN fragment 1576:26978 1590:26992 0.670 +:+ .:. ## cumulative nmp: 0.386 X87344:AF100956+AF027865 sim96_LIN fragment 1591:27003 1621:27033 0.770 +:+ .:. ## cumulative nmp: 0.643 X87344:AF100956+AF027865 sim96_LIN alignment 3225:26925 3279:26993 222.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3225:26925 3250:26950 0.880 +:+ .:. ## cumulative nmp: 0.369 X87344:AF100956+AF027865 sim96_LIN fragment 3251:26963 3257:26969 1.000 +:+ .:. ## cumulative nmp: 0.482 X87344:AF100956+AF027865 sim96_LIN fragment 3258:26972 3279:26993 0.730 +:+ .:. ## cumulative nmp: 0.741 X87344:AF100956+AF027865 sim96_LIN alignment 8484:33673 8541:33730 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8484:33673 8541:33730 0.690 +:+ .:. ## cumulative nmp: 0.690 X87344:AF100956+AF027865 sim96_LIN alignment 8488:33675 8541:33728 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8488:33675 8541:33728 0.700 +:+ .:. ## cumulative nmp: 0.700 X87344:AF100956+AF027865 sim96_LIN alignment 8490:33675 8541:33726 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8490:33675 8541:33726 0.710 +:+ .:. ## cumulative nmp: 0.710 X87344:AF100956+AF027865 sim96_LIN alignment 8492:33675 8541:33724 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8492:33675 8541:33724 0.720 +:+ .:. ## cumulative nmp: 0.720 X87344:AF100956+AF027865 sim96_LIN alignment 13146:13049 13211:13114 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:13049 13211:13114 0.670 +:+ .:. ## cumulative nmp: 0.670 X87344:AF100956+AF027865 sim96_LIN alignment 13147:13176 13190:13219 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13147:13176 13190:13219 0.750 +:+ .:. ## cumulative nmp: 0.750 X87344:AF100956+AF027865 sim96_LIN alignment 13146:12987 13189:13030 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:12987 13189:13030 0.750 +:+ .:. ## cumulative nmp: 0.750 X87344:AF100956+AF027865 sim96_LIN alignment 21188:1978 21314:2121 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 21188:1978 21203:1993 0.750 +:+ .:. ## cumulative nmp: 0.089 X87344:AF100956+AF027865 sim96_LIN fragment 21207:1994 21224:2011 0.830 +:+ .:. ## cumulative nmp: 0.200 X87344:AF100956+AF027865 sim96_LIN fragment 21225:2013 21249:2037 0.720 +:+ .:. ## cumulative nmp: 0.333 X87344:AF100956+AF027865 sim96_LIN fragment 21250:2058 21285:2093 0.640 +:+ .:. ## cumulative nmp: 0.504 X87344:AF100956+AF027865 sim96_LIN fragment 21287:2094 21314:2121 0.680 +:+ .:. ## cumulative nmp: 0.645 X87344:AF100956+AF027865 sim96_LIN alignment 21212:7539 21313:7630 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 21212:7539 21252:7579 0.710 +:+ .:. ## cumulative nmp: 0.300 X87344:AF100956+AF027865 sim96_LIN fragment 21260:7580 21280:7600 0.670 +:+ .:. ## cumulative nmp: 0.445 X87344:AF100956+AF027865 sim96_LIN fragment 21284:7601 21313:7630 0.700 +:+ .:. ## cumulative nmp: 0.662 X87344:AF100956+AF027865 sim96_LIN alignment 13146:28666 13183:28703 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:28666 13183:28703 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 13137:28653 13184:28700 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13137:28653 13184:28700 0.730 +:+ .:. ## cumulative nmp: 0.730 X87344:AF100956+AF027865 sim96_LIN alignment 10647:22928 10698:22979 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10647:22928 10698:22979 0.710 +:+ .:. ## cumulative nmp: 0.710 X87344:AF100956+AF027865 sim96_LIN alignment 10634:22934 10683:22983 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10634:22934 10683:22983 0.720 +:+ .:. ## cumulative nmp: 0.720 X87344:AF100956+AF027865 sim96_LIN alignment 10645:26927 10678:26960 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10645:26927 10678:26960 0.820 +:+ .:. ## cumulative nmp: 0.820 X87344:AF100956+AF027865 sim96_LIN alignment 10636:26922 10673:26959 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10636:26922 10673:26959 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 9929:30500 10040:30611 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 9929:30500 10040:30611 0.600 +:+ .:. ## cumulative nmp: 0.600 X87344:AF100956+AF027865 sim96_LIN alignment 8494:33675 8541:33722 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8494:33675 8541:33722 0.730 +:+ .:. ## cumulative nmp: 0.730 X87344:AF100956+AF027865 sim96_LIN alignment 8498:33673 8541:33716 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8498:33673 8541:33716 0.750 +:+ .:. ## cumulative nmp: 0.750 X87344:AF100956+AF027865 sim96_LIN alignment 8502:33675 8541:33714 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8502:33675 8541:33714 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 8518:33675 8541:33698 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8518:33675 8541:33698 0.960 +:+ .:. ## cumulative nmp: 0.960 X87344:AF100956+AF027865 sim96_LIN alignment 1375:7484 1426:7535 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1375:7484 1426:7535 0.710 +:+ .:. ## cumulative nmp: 0.710 X87344:AF100956+AF027865 sim96_LIN alignment 2:22949 39:22986 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 2:22949 39:22986 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 2:22940 41:22979 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 2:22940 41:22979 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 2:22927 41:22966 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 2:22927 41:22966 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 1:22930 38:22967 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22930 38:22967 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 13604:26933 13663:26993 218.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13604:26933 13633:26962 0.700 +:+ .:. ## cumulative nmp: 0.350 X87344:AF100956+AF027865 sim96_LIN fragment 13634:26964 13663:26993 0.770 +:+ .:. ## cumulative nmp: 0.735 X87344:AF100956+AF027865 sim96_LIN alignment 1553:1969 1621:2037 216.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1553:1969 1576:1992 0.710 +:+ .:. ## cumulative nmp: 0.247 X87344:AF100956+AF027865 sim96_LIN fragment 1578:1993 1596:2011 0.840 +:+ .:. ## cumulative nmp: 0.478 X87344:AF100956+AF027865 sim96_LIN fragment 1597:2013 1621:2037 0.720 +:+ .:. ## cumulative nmp: 0.739 X87344:AF100956+AF027865 sim96_LIN alignment 20873:22422 20972:22517 212.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 20873:22422 20909:22458 0.680 +:+ .:. ## cumulative nmp: 0.257 X87344:AF100956+AF027865 sim96_LIN fragment 20911:22459 20936:22484 0.620 +:+ .:. ## cumulative nmp: 0.421 X87344:AF100956+AF027865 sim96_LIN fragment 20940:22485 20972:22517 0.730 +:+ .:. ## cumulative nmp: 0.667 X87344:AF100956+AF027865 sim96_LIN alignment 8485:33676 8541:33732 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8485:33676 8541:33732 0.680 +:+ .:. ## cumulative nmp: 0.680 X87344:AF100956+AF027865 sim96_LIN alignment 28187:33557 28228:33613 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 28187:33557 28205:33575 0.840 +:+ .:. ## cumulative nmp: 0.326 X87344:AF100956+AF027865 sim96_LIN fragment 28206:33591 28228:33613 0.870 +:+ .:. ## cumulative nmp: 0.734 X87344:AF100956+AF027865 sim96_LIN alignment 13146:12883 13194:12931 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:12883 13194:12931 0.710 +:+ .:. ## cumulative nmp: 0.710 X87344:AF100956+AF027865 sim96_LIN alignment 13147:13054 13189:13096 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13147:13054 13189:13096 0.740 +:+ .:. ## cumulative nmp: 0.740 X87344:AF100956+AF027865 sim96_LIN alignment 13147:28659 13189:28701 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13147:28659 13189:28701 0.740 +:+ .:. ## cumulative nmp: 0.740 X87344:AF100956+AF027865 sim96_LIN alignment 13146:28664 13184:28702 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:28664 13184:28702 0.770 +:+ .:. ## cumulative nmp: 0.770 X87344:AF100956+AF027865 sim96_LIN alignment 10634:22920 10692:22978 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10634:22920 10692:22978 0.680 +:+ .:. ## cumulative nmp: 0.680 X87344:AF100956+AF027865 sim96_LIN alignment 8499:33676 8541:33718 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8499:33676 8541:33718 0.740 +:+ .:. ## cumulative nmp: 0.740 X87344:AF100956+AF027865 sim96_LIN alignment 3225:22917 3251:22943 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3225:22917 3251:22943 0.890 +:+ .:. ## cumulative nmp: 0.890 X87344:AF100956+AF027865 sim96_LIN alignment 3218:22909 3250:22941 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3218:22909 3250:22941 0.820 +:+ .:. ## cumulative nmp: 0.820 X87344:AF100956+AF027865 sim96_LIN alignment 3213:26907 3249:26943 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3213:26907 3249:26943 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 1546:22946 1576:22976 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1546:22946 1576:22976 0.840 +:+ .:. ## cumulative nmp: 0.840 X87344:AF100956+AF027865 sim96_LIN alignment 1:22938 41:22978 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22938 41:22978 0.760 +:+ .:. ## cumulative nmp: 0.760 X87344:AF100956+AF027865 sim96_LIN alignment 1:22932 41:22972 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22932 41:22972 0.760 +:+ .:. ## cumulative nmp: 0.760 X87344:AF100956+AF027865 sim96_LIN alignment 1:22920 41:22960 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22920 41:22960 0.760 +:+ .:. ## cumulative nmp: 0.760 X87344:AF100956+AF027865 sim96_LIN alignment 1:22949 37:22985 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22949 37:22985 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 1:22927 37:22963 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22927 37:22963 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 1:22953 33:22985 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22953 33:22985 0.820 +:+ .:. ## cumulative nmp: 0.820 X87344:AF100956+AF027865 sim96_LIN alignment 8418:33675 8541:33742 208.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8418:33675 8449:33706 0.810 +:+ .:. ## cumulative nmp: 0.270 X87344:AF100956+AF027865 sim96_LIN fragment 8506:33707 8541:33742 0.750 +:+ .:. ## cumulative nmp: 0.551 X87344:AF100956+AF027865 sim96_LIN alignment 8426:33675 8541:33734 208.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8426:33675 8449:33698 0.920 +:+ .:. ## cumulative nmp: 0.251 X87344:AF100956+AF027865 sim96_LIN fragment 8506:33699 8541:33734 0.750 +:+ .:. ## cumulative nmp: 0.558 gff2aplot-2.0.orig/examples/mhcregion/README0000664000000000000000000002467607667662611020647 0ustar rootroot00000000000000################################################## # # README mhcregion # # This README runs as a shell script. # Here you can find the commands # we used to produce all the figures for: # # "Analysis of a Syntenic Region by SIM" # # USAGE: bash README > .log 2>&1 # # $Id: README,v 1.1 2003/03/04 18:06:17 jabril Exp $ # ################################################## # SECONDS=0 ; # # # Original Commands: # # 1/ producing the left panel with genbank annotation, using tblastx alignment: # # gff2aplot19 -v -L Identity% -l "LNMP" -T "GenBank Annotation" h.tag.gff m.tag.gff h.fasta_m.fasta.tblastx h.fast_m.fasta.lnmp.gff > h_m.t.tblastx.ps # # 2/ producing the left panel with genbank annotation, using sim alignment: # # gff2aplot19 -v -L Identity% -T GenBank_Annotation h.tag.gff m.tag.gff h_m.sim.gf > h_m.t.ps # # producing the right panel with genbank annotation+prediction, using sim alignment: # gff2aplot19 -v -l ESTs -L Identity% -X Human -Y Mouse -Z -E 6500 -e 6500 -T "Comparison of prediction and annotation" h.tag.gff m.tag.gff h_m.sim.gff h_m.pred.gff h_est.gff > h_m.z.ps # # Fixing GFF input files # # gawk '{$2="genbank"; print $0}' hs.gff.tmp > hs.gff # gawk '{$2="genbank"; print $0}' mm.gff.tmp > mm.gff # # Getting score limits # # gawk 'BEGIN {min=max="kk"} $3~/fragment/ { if (min=="kk") { min=max=$6 } else { if (min>$6) { min=$6; next }; if (max<$6) max=$6}} END { print "MIN "min" : MAX "max}' hs-mm.sim.gff # MIN 0.380 : MAX 1.000 # # gawk 'BEGIN {min=max="kk"} $3~/alignment/ { if (min=="kk") { min=max=$6 } else { if (min>$6) { min=$6; next }; if (max<$6) max=$6}} END { print "MIN "min" : MAX "max}' hs-mm.sim.gff # MIN 208.000 : MAX 18340.000 # echo "# Running ALI2GFF" ; # $BIN/ali2gff -x "X87344" \ -y "AF100956+AF027865" \ hs-mm.sim > hs-mm.sim.gff ; perl -npe 's{/home.+/(ali2gff)}{ $1};' hs-mm.sim.gff > tmp.gff ; mv -v tmp.gff hs-mm.sim.gff ; # echo "# Getting the PostScripts with GFF2APLOT" ; # echo "# -> Default plot" ; # $BIN/gff2aplot.pl \ --verbose \ --percent-box-label "Identity%" \ --title "Human/Mouse MHCII Region" \ --subtitle "" \ -- hs.gff \ mm.gff \ hs-mm.sim.gff \ > hs-mm.sim.ps \ 2> hs-mm.sim.log ; # echo "# -> CMDline settings" ; # $BIN/gff2aplot.pl \ --verbose \ --percent-box-label "Identity%" \ --show-percent-box \ --title "Human/Mouse MHCII Region" \ --subtitle "" \ --feature-var "seqbounds::alignment_color=grey" \ --feature-var "alignment::alignment_color=red" \ --feature-var "fragment::alignment_color=green" \ --strand-var "..::strand_layer=0" \ --strand-var "++::strand_layer=2" \ -- hs.gff \ mm.gff \ hs-mm.sim.gff \ > hs-mm.sim2.ps \ 2> hs-mm.sim2.log ; # # in case the strand for seqbounds was same as the other features: # # --feature-var "seqbounds::alignment_color=grey" \ # --feature-var "seqbounds::feature_layer=0" \ # --feature-var "alignment::alignment_color=red" \ # --feature-var "alignment::feature_layer=1" \ # --feature-var "fragment::alignment_color=green" \ # --feature-var "fragment::feature_layer=2" \ # # Extra customization cat > mhc2.rc <<'+++EOF+++' # # L # show_percent_box=on aplot_score_range=0..1 # percent_box_score_range=0..1 major_tickmark_score=0.25 minor_tickmark_score=0.05 zoom_area_mark_color=violet zoom_area_fill_color=paleviolet # # G # *::group_shape=arrow /.*polyA.*/::group_shape=none /.*polyA.*/::show_group_label=off # # F # *::ribbon_style=ribbons seqbounds::hide=on alignment::hide=on fragment::alignment_scale_color=on fragment::feature_color=black 3'-utr::feature_color=grey 3'-utr::show_ribbons=off polya::feature_color=grey polya::show_ribbons=off First::feature_color=lightgreen First::show_ribbons=on First::ribbon_color=palegreen Internal::feature_color=lightgreen Internal::show_ribbons=on Internal::ribbon_color=palegreen Terminal::feature_color=lightgreen Terminal::show_ribbons=on Terminal::ribbon_color=palegreen +++EOF+++ # cat > mhc2spc.rc <<'+++EOF+++' # # L # alignment::hide=off alignment::feature_color=lightorange +++EOF+++ # echo "# -> Customized settings" ; # $BIN/gff2aplot.pl \ --verbose \ --percent-box-label "Identity%" \ --show-percent-box \ --title "Human/Mouse MHCII Region" \ --subtitle "" \ --x-label "Human" --y-label "Mouse" \ --custom-filename mhc2.rc \ --custom-filename mhc2spc.rc \ -- hs.gff \ mm.gff \ hs-mm.sim.gff \ > hs-mm.sim.ini.ps \ 2> hs-mm.sim.ini.log ; # ### ZOOM MARKED # cat > mhc2labels.rc <<'+++EOF+++' # # L # group_x_label_angle=45 group_y_label_angle=315 +++EOF+++ # # echo "# -> MARKING ZOOM BOX" ; # $BIN/gff2aplot.pl \ --verbose \ --percent-box-label "Identity%" \ --show-percent-box \ --title "Human/Mouse MHCII Region" \ --subtitle "Zooming into the LMP2 gene region" \ --zoom-area \ --end-x-sequence 6500 \ --end-y-sequence 6500 \ --x-label "Human X87344" \ --y-label "Mouse AF100956+AF027865" \ --custom-filename mhc2.rc \ --custom-filename mhc2labels.rc \ -- hs.gff \ mm.gff \ hs-mm.sim.gff \ > hs-mm.sim.zbox.ps \ 2> hs-mm.sim.zbox.log ; # ### ZOOMED # cat > mhc2+sgp1.rc <<'+++EOF+++' # # L # zoom_marks=on aplot_box_bgcolor=verypaleviolet percent_box_bgcolor=verypaleviolet percent_box_score_range=0.2..1.0 major_tickmark_score=0.2 minor_tickmark_score=0.05 # # S # sgp::source_layer=1 genbank::source_layer=2 # # G # /.*polyA.*/::show_group_label=on /.*polyA.*/::group_shape=bracket /.*polyA.*/::show_group_limits=on /.*Gene.*/::show_group_label=off /.*Gene.*/::group_shape=none # # F # /^p(First|Internal|Terminal)$/::feature_color=red /^p(First|Internal|Terminal)$/::feature_shape=box /^p(First|Internal|Terminal)$/::show_ribbons=on /^p(First|Internal|Terminal)$/::ribbon_color=verylightred /^(First|Internal|Terminal)$/::feature_color=lightgreen /^(polya|3'-utr|First|Internal|Terminal)$/::feature_shape=half_box /^(First|Internal|Terminal)$/::ribbon_color=limegreen 3'-utr::show_ribbons=on 3'-utr::ribbon_color=grey polya::show_ribbons=on polya::ribbon_color=grey +++EOF+++ # echo "# -> ZOOMED REGION" ; # $BIN/gff2aplot.pl \ --verbose \ --percent-box-label "Identity%" \ --show-percent-box \ --title "Human/Mouse MHCII Region" \ --subtitle "Zooming into the LMP2 gene region" \ --zoom \ --end-x-sequence 6500 \ --end-y-sequence 6500 \ --x-label "Human" \ --y-label "Mouse" \ --custom-filename mhc2.rc \ --custom-filename mhc2labels.rc \ --custom-filename mhc2+sgp1.rc \ -- hs.gff \ mm.gff \ hs-mm.sgp1.gff \ hs-mm.sim.gff \ > hs-mm.sim.zoom.ps \ 2> hs-mm.sim.zoom.log ; # # # perl -e '$x="X87344"; $y="AF100956+AF027865"; $a="X87344:AF100956+AF027865"; $x = &escape_input($x); $y = &escape_input($y); $a = &escape_input($a); @b=split /:/o, $a,2; print "$b[0] : $b[1] ::: $b[0] =~ $x -> ".($b[0] =~ /^$x$/)." ::: $b[0] eq $x -> ".($b[0] eq $x)." ::: \"$b[0]\" eq \"$x\" -> ".("$b[0]" eq "$x")."\n"; print "$b[0] : $b[1] ::: $b[1] =~ $y -> ".($b[1] =~ /^$y$/)." ::: $b[1] eq $y -> ".($b[1] eq $y)." ::: \"$b[1]\" eq \"$y\" -> ".("$b[1]" eq "$y")."\n"; sub escape_input() { my $var = $_[0]; $var =~ s{([+*;,<>&!\{\}`'\''"])}{\\$1}g; return $var;}' # # # Preparing web images # filenames () { cat << 'EOF'; hs-mm.sim hs-mm.sim2 hs-mm.sim.ini hs-mm.sim.zbox hs-mm.sim.zoom EOF }; # # echo "# Using \"ghostscript\" to obtain JPEG images from PS files" ; echo "# Using \"ghostscript\" to obtain PNG images from PS files" ; # GS=`which gs || echo "gs"`; MG=`which mogrify || echo "mogrify"`; CV=`which convert || echo "convert"`; # filenames | while read n ; do { echo "# -> $n" ; $GS -dBATCH -dNOPAUSE -r300 \ -sPAPERSIZE=a4 -sDEVICE=png16m \ -sOutputFile=$n.png $n.ps ; cp -v $n.png $n.s.png ; # mogrify is a ImageMagick tool that allow us to transform images on batch, # large high-resolution jpeg files are scaled down to thumbnail resolution (2479x3508=>123x175) # it overwrites original file (so that we previously get a renamed copy for each jpeg to process). $MG -verbose -geometry 5% $n.s.png ; # # $GS -dBATCH -dNOPAUSE -r300 \ # -sPAPERSIZE=a4 -sDEVICE=jpeg \ # -sOutputFile=$n.jpg $n.ps ; # png large version is pretty smaller than jpeg # cp -v $n.jpg $n.s.jpg ; # $MG -verbose -geometry 5% $n.s.jpg ; }; done ; $CV 'vid:*.s.png' mhcregion.summary.png # echo "# Using \"ghostscript\" to obtain PDF documents from PS files" ; # filenames | while read n ; do { echo "# -> $n" ; $GS -dBATCH -dNOPAUSE -r300 \ -sPAPERSIZE=a4 -sDEVICE=pdfwrite \ -sOutputFile=$n.pdf $n.ps ; }; done ; # # # echo "# LaTeXing all figures together..." ; # # latex mhcregion.tex; # dvips mhcregion.dvi -o mhcregion.ps; # # echo "###" ; echo "### TOTAL TIME: $SECONDS seconds..." ; # # # That's all folks... ;^D # # >> Copyleft (C) 2002/2003 - Josep F. Abril << # gff2aplot-2.0.orig/examples/mhcregion/hs-mm.tblastx.gff0000664000000000000000000010244507667662611023143 0ustar rootroot00000000000000## gff # GFF alignment file produced by /home/twiehe/Comptools99/tblastx2gff.2.awk h.fasta_m.fasta.blast X87344:AF100956+AF027865 TBLASTX seqbounds 1:1 32000:35000 . . . . X87344:AF100956+AF027865 TBLASTX alignment 889:829 1056:996 113.000000 +:+ 0:0 . X87344:AF100956+AF027865 TBLASTX fragment 889:829 1056:996 0.690000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 1890:1668 2099:1877 112.000000 +:+ 2:2 . X87344:AF100956+AF027865 TBLASTX fragment 1890:1668 2099:1877 0.600000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 2245:2178 2469:2402 89.600000 +:+ 0:2 . X87344:AF100956+AF027865 TBLASTX fragment 2245:2178 2469:2402 0.450000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 3011:2871 3205:3065 100.000000 +:+ 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 3011:2871 3205:3065 0.630000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 7072:6699 7386:7013 147.000000 +:+ 0:2 . X87344:AF100956+AF027865 TBLASTX fragment 7072:6699 7386:7013 0.580000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 7929:7797 8087:7955 80.700000 +:+ 2:2 . X87344:AF100956+AF027865 TBLASTX fragment 7929:7797 8087:7955 0.600000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 8208:8065 8360:8217 81.200000 +:+ 2:0 . X87344:AF100956+AF027865 TBLASTX fragment 8208:8065 8360:8217 0.620000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 9279:9179 9512:9412 84.600000 +:+ 2:1 . X87344:AF100956+AF027865 TBLASTX fragment 9279:9179 9512:9412 0.530000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 9925:9959 10161:10195 97.000000 +:+ 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 9925:9959 10161:10195 0.510000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 11342:11485 11479:11622 73.300000 +:+ 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 11342:11485 11479:11622 0.600000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 11607:11763 11816:11972 113.000000 +:+ 2:2 . X87344:AF100956+AF027865 TBLASTX fragment 11607:11763 11816:11972 0.640000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 12342:12110 12542:12310 144.000000 +:+ 2:1 . X87344:AF100956+AF027865 TBLASTX fragment 12342:12110 12542:12310 0.830000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 12759:12506 12938:12685 132.000000 +:+ 2:1 . X87344:AF100956+AF027865 TBLASTX fragment 12759:12506 12938:12685 0.780000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 13193:13432 13387:13626 112.000000 +:+ 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 13193:13432 13387:13626 0.720000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 14630:15174 14869:15413 103.000000 +:+ 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 14630:15174 14869:15413 0.550000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 16449:17034 16634:17219 91.600000 +:+ 2:2 . X87344:AF100956+AF027865 TBLASTX fragment 16449:17034 16634:17219 0.610000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 17355:17867 17525:18037 75.200000 +:+ 2:1 . X87344:AF100956+AF027865 TBLASTX fragment 17355:17867 17525:18037 0.560000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 17636:18180 17839:18383 96.000000 +:+ 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 17636:18180 17839:18383 0.580000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 18185:18773 18349:18937 92.500000 +:+ 1:1 . X87344:AF100956+AF027865 TBLASTX fragment 18185:18773 18349:18937 0.610000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 18704:19334 18937:19567 123.000000 +:+ 1:1 . X87344:AF100956+AF027865 TBLASTX fragment 18704:19334 18937:19567 0.660000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 19342:19751 19581:19990 91.100000 +:+ 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 19342:19751 19581:19990 0.520000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 22146:23857 22610:24321 187.000000 +:+ 2:0 . X87344:AF100956+AF027865 TBLASTX fragment 22146:23857 22610:24321 0.520000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 22740:24444 22916:24620 100.000000 +:+ 2:2 . X87344:AF100956+AF027865 TBLASTX fragment 22740:24444 22916:24620 0.660000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 24670:27380 24810:27520 74.700000 +:+ 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 24670:27380 24810:27520 0.630000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 25070:27702 25330:27962 130.000000 +:+ 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 25070:27702 25330:27962 0.600000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 27624:30501 27923:30800 106.000000 +:+ 2:2 . X87344:AF100956+AF027865 TBLASTX fragment 27624:30501 27923:30800 0.470000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 27985:30859 28122:30996 69.800000 +:+ 0:0 . X87344:AF100956+AF027865 TBLASTX fragment 27985:30859 28122:30996 0.560000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 29627:32631 29845:32849 112.000000 +:+ 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 29627:32631 29845:32849 0.580000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 30002:32948 30223:33169 125.000000 +:+ 1:1 . X87344:AF100956+AF027865 TBLASTX fragment 30002:32948 30223:33169 0.600000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 30332:33250 30523:33441 72.800000 +:+ 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 30332:33250 30523:33441 0.540000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 30891:33944 31061:34114 105.000000 +:+ 2:1 . X87344:AF100956+AF027865 TBLASTX fragment 30891:33944 31061:34114 0.660000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 31414:34545 31584:34715 67.800000 +:+ 0:2 . X87344:AF100956+AF027865 TBLASTX fragment 31414:34545 31584:34715 0.490000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 893:833 1051:991 114.000000 +:+ 1:1 . X87344:AF100956+AF027865 TBLASTX fragment 893:833 1051:991 0.790000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 1894:1672 2085:1863 113.000000 +:+ 0:0 . X87344:AF100956+AF027865 TBLASTX fragment 1894:1672 2085:1863 0.700000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 2309:2242 2482:2415 104.000000 +:+ 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 2309:2242 2482:2415 0.680000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 3006:2866 3209:3069 115.000000 +:+ 2:0 . X87344:AF100956+AF027865 TBLASTX fragment 3006:2866 3209:3069 0.690000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 4217:4335 4324:4442 83.600000 +:+ 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 4217:4335 4324:4442 0.800000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 7071:6698 7442:7069 204.000000 +:+ 2:1 . X87344:AF100956+AF027865 TBLASTX fragment 7071:6698 7442:7069 0.620000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 7928:7796 8086:7954 109.000000 +:+ 1:1 . X87344:AF100956+AF027865 TBLASTX fragment 7928:7796 8086:7954 0.730000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 8206:8063 8364:8221 83.600000 +:+ 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 8206:8063 8364:8221 0.600000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 9296:9196 9508:9408 122.000000 +:+ 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 9296:9196 9508:9408 0.670000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 9935:9969 10138:10172 148.000000 +:+ 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 9935:9969 10138:10172 0.790000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 11316:11459 11462:11605 107.000000 +:+ 2:1 . X87344:AF100956+AF027865 TBLASTX fragment 11316:11459 11462:11605 0.830000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 11609:11765 11815:11971 131.000000 +:+ 1:1 . X87344:AF100956+AF027865 TBLASTX fragment 11609:11765 11815:11971 0.720000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 12341:12109 12562:12330 156.000000 +:+ 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 12341:12109 12562:12330 0.660000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 12755:12502 12940:12687 135.000000 +:+ 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 12755:12502 12940:12687 0.700000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 13210:13449 13419:13658 114.000000 +:+ 0:2 . X87344:AF100956+AF027865 TBLASTX fragment 13210:13449 13419:13658 0.580000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 14613:15157 14855:15399 120.000000 +:+ 2:0 . X87344:AF100956+AF027865 TBLASTX fragment 14613:15157 14855:15399 0.600000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 16450:17035 16632:17217 119.000000 +:+ 0:0 . X87344:AF100956+AF027865 TBLASTX fragment 16450:17035 16632:17217 0.730000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 17360:17872 17524:18036 124.000000 +:+ 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 17360:17872 17524:18036 0.810000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 17650:18194 17784:18328 118.000000 +:+ 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 17650:18194 17784:18328 0.910000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 18178:18766 18327:18915 129.000000 +:+ 0:0 . X87344:AF100956+AF027865 TBLASTX fragment 18178:18766 18327:18915 0.940000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 18705:19335 18938:19568 197.000000 +:+ 2:2 . X87344:AF100956+AF027865 TBLASTX fragment 18705:19335 18938:19568 0.890000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 19347:19756 19493:19902 92.500000 +:+ 2:0 . X87344:AF100956+AF027865 TBLASTX fragment 19347:19756 19493:19902 0.690000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 22151:23862 22627:24338 264.000000 +:+ 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 22151:23862 22627:24338 0.640000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 22777:24481 22917:24621 115.000000 +:+ 0:0 . X87344:AF100956+AF027865 TBLASTX fragment 22777:24481 22917:24621 0.890000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 24639:27349 24809:27519 119.000000 +:+ 2:0 . X87344:AF100956+AF027865 TBLASTX fragment 24639:27349 24809:27519 0.800000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 25057:27689 25320:27952 168.000000 +:+ 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 25057:27689 25320:27952 0.750000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 27614:30491 27829:30706 165.000000 +:+ 1:1 . X87344:AF100956+AF027865 TBLASTX fragment 27614:30491 27829:30706 0.800000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 27986:30860 28126:31000 83.100000 +:+ 1:1 . X87344:AF100956+AF027865 TBLASTX fragment 27986:30860 28126:31000 0.610000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 29614:32618 29841:32845 151.000000 +:+ 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 29614:32618 29841:32845 0.710000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 30007:32953 30240:33186 145.000000 +:+ 0:0 . X87344:AF100956+AF027865 TBLASTX fragment 30007:32953 30240:33186 0.710000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 30340:33258 30528:33446 119.000000 +:+ 0:2 . X87344:AF100956+AF027865 TBLASTX fragment 30340:33258 30528:33446 0.710000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 30898:33951 31059:34112 130.000000 +:+ 0:2 . X87344:AF100956+AF027865 TBLASTX fragment 30898:33951 31059:34112 0.880000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 31407:34538 31619:34750 113.000000 +:+ 2:1 . X87344:AF100956+AF027865 TBLASTX fragment 31407:34538 31619:34750 0.610000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 897:837 1037:977 92.500000 +:+ 2:2 . X87344:AF100956+AF027865 TBLASTX fragment 897:837 1037:977 0.720000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 1889:1667 2086:1864 92.500000 +:+ 1:1 . X87344:AF100956+AF027865 TBLASTX fragment 1889:1667 2086:1864 0.540000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 3010:2870 3195:3055 99.500000 +:+ 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 3010:2870 3195:3055 0.640000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 7202:6829 7417:7044 65.300000 +:+ 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 7202:6829 7417:7044 0.450000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 7930:7798 8103:7971 79.700000 +:+ 0:0 . X87344:AF100956+AF027865 TBLASTX fragment 7930:7798 8103:7971 0.550000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 8204:8061 8362:8219 72.800000 +:+ 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 8204:8061 8362:8219 0.600000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 9361:9261 9507:9407 80.200000 +:+ 0:2 . X87344:AF100956+AF027865 TBLASTX fragment 9361:9261 9507:9407 0.590000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 9927:9961 10154:10188 97.000000 +:+ 2:0 . X87344:AF100956+AF027865 TBLASTX fragment 9927:9961 10154:10188 0.560000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 11317:11460 11469:11612 72.300000 +:+ 0:2 . X87344:AF100956+AF027865 TBLASTX fragment 11317:11460 11469:11612 0.580000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 11608:11764 11817:11973 101.000000 +:+ 0:0 . X87344:AF100956+AF027865 TBLASTX fragment 11608:11764 11817:11973 0.580000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 12325:12093 12561:12329 138.000000 +:+ 0:2 . X87344:AF100956+AF027865 TBLASTX fragment 12325:12093 12561:12329 0.640000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 12763:12510 12939:12686 99.500000 +:+ 0:2 . X87344:AF100956+AF027865 TBLASTX fragment 12763:12510 12939:12686 0.690000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 13203:13442 13391:13630 107.000000 +:+ 2:1 . X87344:AF100956+AF027865 TBLASTX fragment 13203:13442 13391:13630 0.630000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 14614:15158 14871:15415 100.000000 +:+ 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 14614:15158 14871:15415 0.520000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 16430:17015 16633:17218 82.700000 +:+ 1:1 . X87344:AF100956+AF027865 TBLASTX fragment 16430:17015 16633:17218 0.570000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 17658:18202 17798:18342 88.100000 +:+ 2:0 . X87344:AF100956+AF027865 TBLASTX fragment 17658:18202 17798:18342 0.700000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 18177:18765 18320:18908 86.100000 +:+ 2:2 . X87344:AF100956+AF027865 TBLASTX fragment 18177:18765 18320:18908 0.620000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 18706:19336 18945:19575 106.000000 +:+ 0:0 . X87344:AF100956+AF027865 TBLASTX fragment 18706:19336 18945:19575 0.580000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 19352:19761 19588:19997 84.100000 +:+ 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 19352:19761 19588:19997 0.490000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 22150:23861 22623:24334 165.000000 +:+ 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 22150:23861 22623:24334 0.510000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 22778:24482 22915:24619 84.600000 +:+ 1:1 . X87344:AF100956+AF027865 TBLASTX fragment 22778:24482 22915:24619 0.730000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 24653:27363 24808:27518 74.200000 +:+ 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 24653:27363 24808:27518 0.590000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 25077:27709 25310:27942 110.000000 +:+ 2:0 . X87344:AF100956+AF027865 TBLASTX fragment 25077:27709 25310:27942 0.600000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 27595:30472 27831:30708 99.500000 +:+ 0:0 . X87344:AF100956+AF027865 TBLASTX fragment 27595:30472 27831:30708 0.540000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 29637:32641 29846:32850 98.500000 +:+ 2:0 . X87344:AF100956+AF027865 TBLASTX fragment 29637:32641 29846:32850 0.520000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 29994:32940 30215:33161 111.000000 +:+ 2:2 . X87344:AF100956+AF027865 TBLASTX fragment 29994:32940 30215:33161 0.600000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 30896:33949 31060:34113 90.600000 +:+ 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 30896:33949 31060:34113 0.670000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 31403:34534 31600:34731 66.800000 +:+ 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 31403:34534 31600:34731 0.460000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 29623:11744 29835:11956 97.000000 +:+ 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 29623:11744 29835:11956 0.490000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 30010:12125 30195:12310 129.000000 +:+ 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 30010:12125 30195:12310 0.770000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 30862:13432 31032:13602 86.100000 +:+ 0:0 . X87344:AF100956+AF027865 TBLASTX fragment 30862:13432 31032:13602 0.560000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 30005:12120 30196:12311 122.000000 +:+ 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 30005:12120 30196:12311 0.670000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 30009:12124 30185:12300 102.000000 +:+ 2:0 . X87344:AF100956+AF027865 TBLASTX fragment 30009:12124 30185:12300 0.640000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 22580:24288 22714:24422 71.800000 +:+ 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 22580:24288 22714:24422 0.600000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 11612:32651 11815:32854 89.100000 +:+ 1:1 . X87344:AF100956+AF027865 TBLASTX fragment 11612:32651 11815:32854 0.510000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 12354:32953 12533:33132 144.000000 +:+ 2:0 . X87344:AF100956+AF027865 TBLASTX fragment 12354:32953 12533:33132 0.880000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 13229:33951 13393:34115 78.200000 +:+ 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 13229:33951 13393:34115 0.560000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 12353:32952 12532:33131 114.000000 +:+ 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 12353:32952 12532:33131 0.630000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 12355:32954 12534:33133 119.000000 +:+ 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 12355:32954 12534:33133 0.660000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 31414:34545 31599:34730 65.800000 -:- 2:0 . X87344:AF100956+AF027865 TBLASTX fragment 31414:34545 31599:34730 0.500000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 30892:33945 31059:34112 91.600000 -:- 2:0 . X87344:AF100956+AF027865 TBLASTX fragment 30892:33945 31059:34112 0.660000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 30331:33249 30522:33440 87.600000 -:- 2:0 . X87344:AF100956+AF027865 TBLASTX fragment 30331:33249 30522:33440 0.540000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 29998:32944 30189:33135 97.500000 -:- 2:2 . X87344:AF100956+AF027865 TBLASTX fragment 29998:32944 30189:33135 0.640000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 29561:32565 29839:32843 99.000000 -:- 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 29561:32565 29839:32843 0.450000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 27624:30501 27824:30701 98.000000 -:- 0:0 . X87344:AF100956+AF027865 TBLASTX fragment 27624:30501 27824:30701 0.590000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 25070:27702 25309:27941 92.100000 -:- 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 25070:27702 25309:27941 0.570000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 22777:24481 22929:24633 88.600000 -:- 2:2 . X87344:AF100956+AF027865 TBLASTX fragment 22777:24481 22929:24633 0.660000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 22134:23845 22643:24354 179.000000 -:- 0:2 . X87344:AF100956+AF027865 TBLASTX fragment 22134:23845 22643:24354 0.500000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 18706:19336 18951:19581 124.000000 -:- 2:2 . X87344:AF100956+AF027865 TBLASTX fragment 18706:19336 18951:19581 0.600000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 18188:18776 18322:18910 84.100000 -:- 1:1 . X87344:AF100956+AF027865 TBLASTX fragment 18188:18776 18322:18910 0.640000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 17657:18201 17779:18323 88.600000 -:- 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 17657:18201 17779:18323 0.700000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 17346:17858 17525:18037 68.800000 -:- 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 17346:17858 17525:18037 0.480000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 16435:17020 16614:17199 81.200000 -:- 2:2 . X87344:AF100956+AF027865 TBLASTX fragment 16435:17020 16614:17199 0.600000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 14613:15157 14852:15396 92.500000 -:- 0:2 . X87344:AF100956+AF027865 TBLASTX fragment 14613:15157 14852:15396 0.530000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 13220:13459 13387:13626 94.500000 -:- 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 13220:13459 13387:13626 0.670000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 12759:12506 12938:12685 98.000000 -:- 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 12759:12506 12938:12685 0.660000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 12330:12098 12557:12325 127.000000 -:- 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 12330:12098 12557:12325 0.670000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 11607:11763 11816:11972 85.600000 -:- 0:0 . X87344:AF100956+AF027865 TBLASTX fragment 11607:11763 11816:11972 0.550000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 9926:9960 10156:10190 95.500000 -:- 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 9926:9960 10156:10190 0.540000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 9278:9178 9511:9411 86.100000 -:- 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 9278:9178 9511:9411 0.520000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 8212:8069 8361:8218 71.800000 -:- 2:1 . X87344:AF100956+AF027865 TBLASTX fragment 8212:8069 8361:8218 0.600000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 7929:7797 8102:7970 72.800000 -:- 0:0 . X87344:AF100956+AF027865 TBLASTX fragment 7929:7797 8102:7970 0.550000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 3009:2869 3188:3048 99.000000 -:- 0:2 . X87344:AF100956+AF027865 TBLASTX fragment 3009:2869 3188:3048 0.660000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 1888:1666 2085:1863 81.700000 -:- 2:2 . X87344:AF100956+AF027865 TBLASTX fragment 1888:1666 2085:1863 0.540000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 896:836 1051:991 93.000000 -:- 1:1 . X87344:AF100956+AF027865 TBLASTX fragment 896:836 1051:991 0.690000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 31406:34537 31597:34728 81.700000 -:- 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 31406:34537 31597:34728 0.570000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 30890:33943 31057:34110 97.500000 -:- 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 30890:33943 31057:34110 0.660000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 30332:33250 30526:33444 91.100000 -:- 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 30332:33250 30526:33444 0.550000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 29975:32921 30235:33181 121.000000 -:- 1:1 . X87344:AF100956+AF027865 TBLASTX fragment 29975:32921 30235:33181 0.570000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 29626:32630 29844:32848 112.000000 -:- 2:1 . X87344:AF100956+AF027865 TBLASTX fragment 29626:32630 29844:32848 0.630000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 27638:30515 27853:30730 101.000000 -:- 1:1 . X87344:AF100956+AF027865 TBLASTX fragment 27638:30515 27853:30730 0.540000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 25078:27710 25308:27940 146.000000 -:- 2:1 . X87344:AF100956+AF027865 TBLASTX fragment 25078:27710 25308:27940 0.670000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 24648:27358 24809:27519 75.200000 -:- 0:2 . X87344:AF100956+AF027865 TBLASTX fragment 24648:27358 24809:27519 0.620000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 22739:24443 22915:24619 100.000000 -:- 1:1 . X87344:AF100956+AF027865 TBLASTX fragment 22739:24443 22915:24619 0.640000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 22145:23856 22639:24350 183.000000 -:- 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 22145:23856 22639:24350 0.510000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 19343:19752 19492:19901 83.100000 -:- 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 19343:19752 19492:19901 0.680000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 18711:19341 18932:19562 130.000000 -:- 0:0 . X87344:AF100956+AF027865 TBLASTX fragment 18711:19341 18932:19562 0.600000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 18184:18772 18348:18936 98.000000 -:- 2:2 . X87344:AF100956+AF027865 TBLASTX fragment 18184:18772 18348:18936 0.630000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 17658:18202 17810:18354 92.100000 -:- 0:2 . X87344:AF100956+AF027865 TBLASTX fragment 17658:18202 17810:18354 0.740000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 17357:17869 17524:18036 80.200000 -:- 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 17357:17869 17524:18036 0.580000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 16448:17033 16633:17218 89.600000 -:- 1:1 . X87344:AF100956+AF027865 TBLASTX fragment 16448:17033 16633:17218 0.590000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 14629:15173 14865:15409 101.000000 -:- 2:1 . X87344:AF100956+AF027865 TBLASTX fragment 14629:15173 14865:15409 0.580000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 13239:13478 13382:13621 106.000000 -:- 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 13239:13478 13382:13621 0.750000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 12758:12505 12943:12690 112.000000 -:- 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 12758:12505 12943:12690 0.700000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 12337:12105 12561:12329 137.000000 -:- 2:0 . X87344:AF100956+AF027865 TBLASTX fragment 12337:12105 12561:12329 0.650000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 11612:11768 11815:11971 106.000000 -:- 1:1 . X87344:AF100956+AF027865 TBLASTX fragment 11612:11768 11815:11971 0.660000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 11337:11480 11468:11611 76.700000 -:- 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 11337:11480 11468:11611 0.630000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 9924:9958 10133:10167 97.000000 -:- 0:2 . X87344:AF100956+AF027865 TBLASTX fragment 9924:9958 10133:10167 0.550000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 9312:9212 9518:9418 87.100000 -:- 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 9312:9212 9518:9418 0.530000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 8207:8064 8362:8219 77.700000 -:- 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 8207:8064 8362:8219 0.590000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 7922:7790 8101:7969 85.100000 -:- 1:1 . X87344:AF100956+AF027865 TBLASTX fragment 7922:7790 8101:7969 0.530000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 7071:6698 7421:7048 165.000000 -:- 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 7071:6698 7421:7048 0.580000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 3010:2870 3192:3052 105.000000 -:- 2:1 . X87344:AF100956+AF027865 TBLASTX fragment 3010:2870 3192:3052 0.620000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 1889:1667 2098:1876 108.000000 -:- 1:1 . X87344:AF100956+AF027865 TBLASTX fragment 1889:1667 2098:1876 0.610000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 888:828 1055:995 99.500000 -:- 0:0 . X87344:AF100956+AF027865 TBLASTX fragment 888:828 1055:995 0.670000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 31419:34550 31598:34729 82.700000 -:- 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 31419:34550 31598:34729 0.550000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 30897:33950 31058:34111 135.000000 -:- 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 30897:33950 31058:34111 0.870000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 30333:33251 30524:33442 114.000000 -:- 0:1 . X87344:AF100956+AF027865 TBLASTX fragment 30333:33251 30524:33442 0.680000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 29994:32940 30239:33185 143.000000 -:- 0:0 . X87344:AF100956+AF027865 TBLASTX fragment 29994:32940 30239:33185 0.650000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 29631:32635 29840:32844 132.000000 -:- 0:2 . X87344:AF100956+AF027865 TBLASTX fragment 29631:32635 29840:32844 0.720000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 27973:30847 28167:31041 72.300000 -:- 2:2 . X87344:AF100956+AF027865 TBLASTX fragment 27973:30847 28167:31041 0.490000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 27613:30490 27831:30708 143.000000 -:- 2:2 . X87344:AF100956+AF027865 TBLASTX fragment 27613:30490 27831:30708 0.750000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 25077:27709 25319:27951 146.000000 -:- 0:2 . X87344:AF100956+AF027865 TBLASTX fragment 25077:27709 25319:27951 0.720000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 24629:27339 24808:27518 102.000000 -:- 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 24629:27339 24808:27518 0.610000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 22761:24465 22919:24623 109.000000 -:- 0:0 . X87344:AF100956+AF027865 TBLASTX fragment 22761:24465 22919:24623 0.750000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 22168:23879 22623:24334 216.000000 -:- 2:1 . X87344:AF100956+AF027865 TBLASTX fragment 22168:23879 22623:24334 0.580000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 19347:19756 19607:20016 99.000000 -:- 0:2 . X87344:AF100956+AF027865 TBLASTX fragment 19347:19756 19607:20016 0.510000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 18704:19334 18937:19567 164.000000 -:- 1:1 . X87344:AF100956+AF027865 TBLASTX fragment 18704:19334 18937:19567 0.890000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 18183:18771 18326:18914 110.000000 -:- 0:0 . X87344:AF100956+AF027865 TBLASTX fragment 18183:18771 18326:18914 0.790000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 17641:18185 17808:18352 100.000000 -:- 2:1 . X87344:AF100956+AF027865 TBLASTX fragment 17641:18185 17808:18352 0.670000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 17356:17868 17526:18038 114.000000 -:- 2:0 . X87344:AF100956+AF027865 TBLASTX fragment 17356:17868 17526:18038 0.750000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 16449:17034 16649:17234 120.000000 -:- 0:0 . X87344:AF100956+AF027865 TBLASTX fragment 16449:17034 16649:17234 0.670000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 14612:15156 14869:15413 111.000000 -:- 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 14612:15156 14869:15413 0.550000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 13219:13458 13419:13658 114.000000 -:- 2:0 . X87344:AF100956+AF027865 TBLASTX fragment 13219:13458 13419:13658 0.640000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 12754:12501 12939:12686 122.000000 -:- 2:0 . X87344:AF100956+AF027865 TBLASTX fragment 12754:12501 12939:12686 0.740000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 12329:12097 12562:12330 140.000000 -:- 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 12329:12097 12562:12330 0.690000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 11608:11764 11817:11973 113.000000 -:- 2:2 . X87344:AF100956+AF027865 TBLASTX fragment 11608:11764 11817:11973 0.670000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 11318:11461 11464:11607 105.000000 -:- 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 11318:11461 11464:11607 0.790000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 9805:9839 10155:10189 128.000000 -:- 2:1 . X87344:AF100956+AF027865 TBLASTX fragment 9805:9839 10155:10189 0.520000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 9277:9177 9495:9395 111.000000 -:- 2:0 . X87344:AF100956+AF027865 TBLASTX fragment 9277:9177 9495:9395 0.580000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 8211:8068 8360:8217 80.200000 -:- 0:2 . X87344:AF100956+AF027865 TBLASTX fragment 8211:8068 8360:8217 0.620000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 7930:7798 8115:7983 92.500000 -:- 2:2 . X87344:AF100956+AF027865 TBLASTX fragment 7930:7798 8115:7983 0.610000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 7052:6679 7417:7044 166.000000 -:- 1:2 . X87344:AF100956+AF027865 TBLASTX fragment 7052:6679 7417:7044 0.570000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 4237:4355 4326:4444 72.800000 -:- 2:1 . X87344:AF100956+AF027865 TBLASTX fragment 4237:4355 4326:4444 0.930000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 3008:2868 3193:3053 132.000000 -:- 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 3008:2868 3193:3053 0.790000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 2302:2235 2481:2414 129.000000 -:- 2:0 . X87344:AF100956+AF027865 TBLASTX fragment 2302:2235 2481:2414 0.760000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 1905:1683 2084:1862 137.000000 -:- 0:0 . X87344:AF100956+AF027865 TBLASTX fragment 1905:1683 2084:1862 0.800000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 889:829 1050:990 119.000000 -:- 2:2 . X87344:AF100956+AF027865 TBLASTX fragment 889:829 1050:990 0.830000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 12354:32953 12533:33132 99.000000 -:- 0:2 . X87344:AF100956+AF027865 TBLASTX fragment 12354:32953 12533:33132 0.660000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 12352:32951 12531:33130 105.000000 -:- 2:1 . X87344:AF100956+AF027865 TBLASTX fragment 12352:32951 12531:33130 0.630000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 12353:32952 12523:33122 120.000000 -:- 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 12353:32952 12523:33122 0.800000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 30008:12123 30196:12311 105.000000 -:- 1:0 . X87344:AF100956+AF027865 TBLASTX fragment 30008:12123 30196:12311 0.630000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 30004:12119 30195:12310 103.000000 -:- 2:1 . X87344:AF100956+AF027865 TBLASTX fragment 30004:12119 30195:12310 0.670000 .:. .:. . X87344:AF100956+AF027865 TBLASTX alignment 30009:12124 30179:12294 115.000000 -:- 0:2 . X87344:AF100956+AF027865 TBLASTX fragment 30009:12124 30179:12294 0.750000 .:. .:. . gff2aplot-2.0.orig/examples/mhcregion/hs.fa0000664000000000000000000007743607667662612020714 0ustar rootroot00000000000000>X87344 TTTTTGTTTGTTTTTTCTTTTTCTTTTCTTTTTTTTTTCTTAAGATAGGGTCTTTCTCTG TCACCCACGCTAGAGTGCAGTGGCGCAATCACAGCTCACTGTAGCCTCAAACTCCCAGGC CTAAGCGATCCTCCCACTCAGCCTCCCAGGCAGCTGGGACTACAGGCATGCACCACCGCA CCCGACTAATTTTTAAATTTTTTTGTAGAGATGGGGTTCTCACTATGTTGCCCAGGCTGG TCACTAACTCCTGGGCTCAAGCAATCCTCCCGCCTTGACCTCCCAAAGTGCTGGGATTAC AGGTGTGAATACAGGGGGTTTTTTGGTTTGAATTTTAAGAGATAAAATTTATAAAACATT TAGCCAATGCCACAAATGTAGCTTCTTTTGGTTATTGTCATTATTCTTTGAAATTCACAA GTGCCCCAAAATATTTAAGCATTTTTCATGTATTGCCCTTTAATATGAATGAATGCATTA TGAAAGGAATTCTTTTACATGCGAGTTTGCTGATAGTCTTAGCTAATTCTCATGTGTGTA GGTGTCTTGCCTATCTGTCAGTCTTAGCCTTAAAGGAAAGAGTCCCATCACCTCACTTGC GGCCTCATCATCATGGACCGCATGATGATGCGGAATGAGAATTTTTATTGTTTGTACTAC TTCAAAATCATTCAGTACGTGATCACCTGTCATGTATAGGGCTCTTTATATTTCTAGTTT AGTCCCTTTTGTTTTCTCTAGGAAAGATGTTTTAGACCTGGGACAAAAGAAGAAAGAGTG TATGCTGACATCTAGGAGGGAAGCACCCACCTCCCCTAAGCTCCATCTCCCTGAGCACTC ATTTCCCAATGACCATACCAGGTTTTGGCCCTAGAGAGTTTATTACAAAATAAGAAAGAG AAGTCTGGGGAAGGTTCACTCATCATAGAATTTTGGCAGTTCATTGCCCAAGATGACTCG ATGGTCCACACCGGCAGCTGTAATAGTGACCAGGTAGATGACACCCCCGCTTGAGCCATC CCGGCTCATGGCCAGAGCAATAGCTGCAGAGGGTTTCAAGTTGGAGAGAGGGAGAGAGAG GATGGCTTAGCTTCAAAAATCTTTTTACTCCCCCTCCATCCATATGCCTACTACCACTTT CACCTCAAAACTCATCTTCCAGGAAGGCATATTTAGTGGTGTGCTGGTAAATCAGTTTTT TTACAAAAAGGCTTCCATATGTGGCATCTGCTGATGTCCGTGGTGTAAATGCTCCCGCTA TGATGAATTGCAAGTTACAAATAGCTAAGCAGTTCACAAATCCTTGACTATTTAACAGTC CGCTCTCATGAGTGGTCCCAAGCCAGCCTCAGCACACCTCAGCACACCACTGGTTCTTTT TTTTTTTTTTTTTCTCCAGACAGGGTCTCTCTCTGTCACCTAGGCTGCAGCGCAGTGGTG CAATCACCGCTCACTACAGCCTTGATCTCCCCGGCTCAGATGATCTTTCCACCTCAGCCT CCTGAGTAGCTGGGACTACAGGTGTGCACCACTATGCCCAGTTCATTTTTTTTTTTACTT TTTTTTATTGTTTTTTGTGGAGACAGGGTTTCACCATCTTGCCTAGGCTGGCCTCAAACT CCTGGGCTCAAGTAATCCTCCTGCCTCAGCCTCCCAAATTGTTGGCATTACAGGTGTGAG CCACTGTGCTTAGCACACCACTGGTTCTCACAGTGACTGTGTATCCTCATTTGATTTACT CAGAACAGCCCTGGTTTATCCGTATTGCCCAAGAACCCCATTGAGCTTTGCATTTGTCCT GCCCCTTTTCACTCTTAAAAGTGTACCAGGCCCGGCATTAACTTAAATGGCCACCCCTGT ATTTCTCTTCCTGTTCCTCATAATCTACTTCCTTCCCATGTTTCAAAGCCCTCCCCAGGT ACCCTTCCACTTGGCTGGTTACCGTCTGTGGTGAAGCGCCTGCACTCCTCGGGAGACATG CCTGGCTTATATGCTGCATCCACATAACCATAGATAAAGGTGCTGCCGGAGCCACCAATG GCAAAAGGCTGTCGAGTCAGCATTCCTCCCAGGGTTCCATATACCTGGGAAAGGGATCCT CAGGTTAAAGAATCATCAAGCCCTTCCTTCCCACTGAGACATTAAGTGGTCTCTGCACCC TGCAATGAAGCCCTGGTATCTCATATCCCCAAAGTACTATGCTTTCAGAGGTAGTGTCCT TGGAACTCATTGCTAGAATGACATAGGACTTCCATCTTCCTCTGCAGGAGAGTGGGGAAG CCCAGAGGAGAGAGTGCTTTGGGAGAAACTCACCTGACCTCCTTCACGTTGGTCCCAGCC AGCTACCATGAGATGTGCAGACAAGTCCTCTCGATATTTATAGCTGATATTTCTCACCAC ATTTGCAGCAGCCAAAACAAGTGGAGGTTCCTCCAGTTCTATCCTGAGGGAAATATTAGG AATAAAGGTTGATAGAATTTTAAGTCTCATTCTCCTATACTGTTACCATCATCCCTGCTA AACGACCCCTGAAAACTGTAACTGCAATAGCTCAAACTGCAGCCTCCCTCCCACATGTAC AGGGGAACCAGAGTCCCACACCACCAACTGGTAAGAAGCTTTCAATTGCTCACTCTTTTG CTCAGCCCCACCCACATAACTTTCTTTTGGCTGCAAGGACCCTGCTCTTATGGGGAAAAG CAGATAAGGTTACTTCCGTCCCAACGACCTTGATTTCTCGTATGGTAACTGCCTGATATT ATGGTGGGTCACAATATCACCTTCTTCCTGATTATTTATATCAGGATAGTGATTTACAGC TTTTAAACTGTGTTCACATATAGAATGTGGTTCTCAAAATAACCGTCTCATGAGGTACTA TATTATCTCCACTTTACAGATGCAGAAACTGACAGATTCAAGTGCCAGCAAGAGCCGAAA CAAGACTTTTCCATTTCCCAGTGTCCAGCTCCTGGAACAGCACACTGTACAGGGATTCAT GCAGGTTGGGGGAGCTCTAGTGGGTGGGGAGTCAGAACTCCAGAGCTTCATACCCATGGA GCTCCAGCTGGTAGGCGGCCATGTCGGCCACGGCTTGGGCATCAGCAGCTGAACCAGAGA GTGCACAGTAGATGCGCTCGTGCAGCGGGGACAGCTTGTCAAACACTCGGTTCACCACCG CCTCGCTGTCAGGAGGGAGTCAACAGTCACCAAGTTAAAACTCAGGTTTTTTTTTTTTTT TTTTTTTTTTGAGACAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGATCAATCTTG GGCTCACTGCAAACTTCGCCTCCCTGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAAT AGCTGGGATTACAGGCACCCACCACCAAGCCCAGCTAATGTTTGTATTTTCAGTAGAGAC AAGGTCCCAACATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAATATCTGCCCACC TCGGCATCCCAAAGTGCTGAGATTATAGATGTGAGCCACTGCACCCAACCAGAACTCAGG AATTTTTGAGGGTGATCATTCAATGTCTCTCAAATTTCTTTGACAAGAGAATAGCATGAA GTTTAATGCTTGGATTAAAGCAGGAGGCAAATAATCATCTCAGATATTATTAATCACTGC AGATGTTAATCAAAATTAGGCTTATTTTTCAGGCTTAGATTTTATAACAAAGCAAAAAAT GCTAAGGTAAGAAAAATATGCCTCATCAATTTTCTTTGCTATTAACAATCTTGAGAGAGT TATGTTCTATGGAACATAATGTCAGTAATATTGACCTAACCCCATATACTCATTTTGCAT GTGAGGAAATTGGTTAGGAGTGGGAGAAGAGACAAAATAGTTCAATATATGGTAAATGAG AAACCAGGTATCTGCTTGACAGAATCATCTTTTTGATCCCTAAGCACAGATGGAAAGAAG ACCCTCAAAAATCTATCTCCTGTCCCCCTCTCAGACCCTATTCCTTTACTCATCCCTGTA CACTACTGGGACAGGTCACATACACATTCAGACCCCAGATCCTCCTCCACAAATTCAGAG ACCCAAGCACCCACCAAATAGCTTATCATAGTGGCTTTTGGGGAAGGTCAACTCCATTCC TCCAAGGCTCCAGTTTGCCAGTCTTTTCATGAATGGGTAAGGAAAGTGTGTATTTGAGGC CATTAGCTTCTTTCCAAATGCATACATCTTCACTTTTACTCACCCTGCAGACACTCGGGA ATCAGAACCCATCACAACGCCCCCGTCAAACTCCACTGCCATGATGGTGGTCTGCAGAGA CACAGAATATGGAATGTCAGGGCAAGAACAGCCTTGATGCCCTCATGTTAGAGAAGAAGA AACATTCCCAGAGAGGCGAAGTGACTGGCTCAAAGATTACACAGTAACAGGCCAGAGCTG ACTGTCAGTACAGGCTTTTTTTCCCTTCATCTTTCCACTTTCTCTATTGCTTCATCCGGC TGCAGGGGAATGCCACAGCCCAGCTGTGATACAACACAGAAAGAACTGTGTCCCTAAGTT CCAACTTGCCTAGTGGAATCCTCTCCACTGTAGAGAGGTGGAGATGAGGCTCCTACAGGT AGAAGTGAAGCAGCTCCGCAAGTGAAAATTATCTCCAACGGAAGGGCTCATAGTATGTGC AGATGTGGTGTAGACCCAACACAGAGTAATTGACTATGATCTTGGGAAACAAGGTCAGTC TATTTTTTTTTTTTTGGTCCACAATCCTCCACTCTCACCCCCCATTTCATCAGAAGTGAG CTCTTCCAATTTACTGAACATTGGAAAAAATCGAGGAGGGCAGTGGTTAGCATGGCCAGG GGCAAGGCAGGAGAGAAGCAGCAAGGAACACATACAGATGGTTGAAAATAAAAGTTTCAG TTATGGAATTTCCGATCAAGAGGTAAATACATATCTCAGCAGCCAGGGAGGTAAATTTGT ACCAAGAGATAATTTGACTGAGAAGTTTAAGCTGACTTTTCCAGGTCAAGAAAAGAATCA AGAAGAAGTGAGGGAAGATAAAGCTACATTTATTCTACTATTGAGTTGGAAGGAGCCTTA AAGATCCTCGGTTCAAATGAGGAAACCAAGTCACAGAAAATGCAAACGACTTATGCAAAG TCACACAGAGTTAATAGTAGACCTGGGACTAAAATTCAGGTCTAACTCTTATCCCTTGTT TCCACTTCTACTTCCTACTTGCCACTGCTCATTTGGCAGTGAGGGGAGATTTCCCAAATT ATAAGTGGTTTCACTGTGTCTTTCTTACCAGGCCGTAAGTTACTCTGGCCCCAAAGGACG CTCCTCTGAGTATGCTTTCCGACGGACCGACTTATCATGAATAGAGGGTCAAAGAACAGG GTTAACTTCAAGTTAGAGGCTATTCCTCTCTAACAAAGCCGCCCCCAAGCCACGAGTGGT GGCAGTAGTCCAGAGCAGAAGCCAGCCAGCCAGTCTTGGGGCTGCCATCTGCCCCAGGCG CCCATCCTAAGCAAAGTCCCCCCAGTGGGCACATGGGAGTGGGCAGGGAAGACACAGGGA AGGGAGTAAGGCAGCATCTGGGCCAAGGAGAGGCCTTCCTGGGTCAAGCTAGGGAAGGGC ATCACTAGTTAACACAGAACGCCCATTATCAGTGCTTGGGCTAAGAGTTGCCCAGTGGCA AGTTTATCAAAAGTCTGTGTGATGAGTTGGTCCTTCTCAATAAGTGCCTATATTTCCTTC TCCCAAGTGCTGTTCTACTTCACCCAGGGCACCATTTCCTCATCTCTTTGCACCATCCCC AACCCCCTTTCTTGATTTAACCAGCCCCCACTGTCCGGGACCAGAGTGAAAGCGAAAGCG CTTTAGAGTAGCTTCCCGTTGACGCTTCCAGCTAAGAGTCAAAGCACCCGCTTTTTCCAC CAGCCTCGCGTGCCTGTTCCCTTCACGGACACTCTAGACGACCCCCCTCAGAAAAGAAAT ACTCTATGCTCATTGCGGGTTGCAAGCGCTGGCTGCTACAGGCGACCTCCCTGCGCTCCC GTTGGTCTCTGCATTCACTTCTCCGCGCGCGCTTCCAGGGTCCCCTGGCCGCTGCATCTC CTCCACCCCTCTGCCAACCCTCAAGCCCAGACCCATTACCCCGGTGTGGACTTCTCCCGC CCGGGGTAAGTCCCCGGTTGGTGCTCCCGCCCGCAGCATCCCTGCAAGGCACCGCTCTCC TCGCCGCCTGGGGCACTGGTTTCCAACCTGGGACAGCGCACAACGCGCAGCCGACAGCCC CGCCCCTTCGCGGCGCCGCCAGGAGGCGCCTGGGTGCTGCGGGGCTGCTTTGCGCGCGGC GCTAACGTGTGTAGGGCAGATCTGCCCCGAGACAAGTGACGAGGCAGCCCCGCCCTGAGG CTGGGGTGGGAAAACTGGTGCAAGTGGAAAGGCAGGAGGCAGGGAGAGGCGAGAAGGGTG TGCGTGATGGAGAAAATTGGGCACCAGGGCTGCTCCCGAGATTCTCAGATCTGATTTCCA CGCTTGCTACCAAAATAGTCTGGGCAGGCCACTTTTGGAAGTAGGCGTTATCTAGTGAGC AGGCGGCCGCTTTCGATTTCGCTTTCCCCTAAATGGCTGAGCTTCTCGCCAGCGCAGGAT CAGCCTGTTCCTGGGACTTTCCGAGAGCCCCGCCCTCGTTCCCTCCCCCAGCCGCCAGTA GGGGAGGACTCGGCGGTACCCGGAGCTTCAGGCCCCACCGGGGCGCGGAGAGTCCCAGGC CCGGCCGGGACCGGGACGGCGTCCGAGTGCCAATGGCTAGCTCTAGGTGTCCCGCTCCCC GCGGGTGCCGCTGCCTCCCCGGAGCTTCTCTCGCATGGCTGGGGACAGTACTGCTACTTC TCGCCGACTGGGTGCTGCTCCGGACCGCGCTGCCCCGCATATTCTCCCTGCTGGTGCCCA CCGCGCTGCCACTGCTCCGGGTCTGGGCGGTGGGCCTGAGCCGCTGGGCCGTGCTCTGGC TGGGGGCCTGCGGGGTCCTCAGGGCAACGGTTGGCTCCAAGAGCGAAAACGCAGGTGCCC AGGGCTGGCTGGCTGCTTTGAAGCCATTAGCTGCGGCACTGGGCTTGGCCCTGCCGGGAC TTGCCTTGTTCCGAGAGCTGATCTCATGGGGAGCCCCCGGGTCCGCGGATAGCACCAGGC TACTGCACTGGGGAAGTCACCCTACCGCCTTCGTTGTCAGTTATGCAGCGGCACTGCCCG CAGCAGCCCTGTGGCACAAACTCGGGAGCCTCTGGGTGCCCGGCGGTCAGGGCGGCTCTG GAAACCCTGTGCGTCGGCTTCTAGGCTGCCTGGGCTCGGAGACGCGCCGCCTCTCGCTGT TCCTGGTCCTGGTGGTCCTCTCCTCTCTTGGTAAGGGGAACGCAGGGCAAGAGGGGAGGA CACAAGGGGACTGGGACAGGAATCAAAGGTAATTGTCAGTAAGGTAGAGTAGCGTGGGTT CTGGGAAATGTGGAGCGGGAGAAGGACTCCTAGCGTGGGTCTTGGAACACCACTTCGGTG TAGAAGAAACGGCACTGGACTGGCGGGGGCCAGAGGTTCTGGGCTCCATTGCTGACCGGG TCTTGATTCTTTGGGCCACGCCGGAAGCGGGGAAATCCTTTGCTCTGGGGCCGAAGGGCG GGGCATCCTCATCTCTAACAGGAGGCTTTTCTACTTCATGATCTCCAGCCTTCCTAATAA AATCCTGAAAGTTCTGGTAGAGCAACCACAGGGTAGTGAGTTCCAGGGCAGCCTATTTAG GTTCGGGATTGAGACGTCAGTGTTTCCTTTCTGCTGATGCCCTCCAGGATAATGGTGAGG GGGAGGAGGCGTGGTGGGGCCAGTCTGACTGGAACTGACCTACTTAGACTTAATATTTGT GCGTGACCTCTCTTCTCTTTCTCCAGGGGAGATGGCCATTCCATTCTTTACGGGCCGCCT CACTGACTGGATTCTACAAGATGGCTCAGCCGATACCTTCACTCGAAACTTAACTCTCAT GTCCATTCTCACCATAGCCAGGTCTGGGGGCTGAAAATGGGGCACCCTGCAAATGAGGGA GTTGGAAGTTGGGGCTGCTGTCCGAAATGCACTTATATGGGGATACCTGGGACCTTCAGT CTGTTCCCTGAACACACCCTGATCCCCTTTTTTTCCGGGTTCTTTATAGTGCAGTGCTGG AGTTCGTGGGTGACGGGATCTATAACAACACCATGGGCCACGTGCACAGCCACTTGCAGG GAGAGGTGTTTGGGGCTGTCCTGCGCCAGGAGACGGAGTTTTTCCAACAGAACCAGACAG GTTTCTCCTGAAACTCTTTCATTATACGCCATGTACTGTTCATATCCTCATACATCTGCT TTGATCTCCCCCCTCCCCGCTCTCTCTCTCTCACACACACATACACACATTGTTCCTTCT CATTCTTGATATACCCTCTCCCTGTCTCTCTCTCTCTGTCTCTGTCTCTCTCTCTCTCTC TCTCACACACACACACACACAATTGTTTTTCTCATTCTTGATATACCTCAGGAGCAAAAT ATTGTCCTCCTTACCTTAAGAAAAACCTAGAGTTTTCATCTAGCATTTTCTTATAAATCT ATTCCTATGTATCCTTAGATAGAAACCATAGAATTTCAAACCTGGAAATTTTGAGCTCAT AGAGACCAACTGCCTCATCTGACAGAGAAGGAAACTGAGGCCAAGACCCTAAATGCTGAA ACTGCACAGTTACATATGGCTAGAGACACACTTGGGGTTAGAACCCTGGTCTCTTGAGTG CTCCACAGACTTCGGCATGCTTTCTAGCAGCACTAGAAGCTGTACAGTTACATATGGCTA GAGATAGACCTGGGGTTAGAACCCTAGTCCCAGTGAGTGCTCCACAGACTTTGGCATGCT TCCTAGCAGCACCCTCCTCCTCCATCTCTGTTATGTGACCAGTTTAAGCTCTTCCTGCCT GTGTGTATAGCATGGGACATACAGGTTCTCTAGGGAACAGAAAGCTTTCAGGAAAATGGA AATTCACATGTGCATTAATGACTTTATAATTAAAATGAAGGTCAGGCCTTTCCTCTTTAA CACTCATCTTCCCTGCACTGAGATTTGCAGACCTCTGGAGAACCCTAACCTTGTTTCCTG CAGCCTCCTTAGAACCCCATGTTGACACCCCTGACCCTGGCATCCTGGCTCATTGTTAGT TCGTCTCATCACTTGGAACCTGTCTGATTCACCTCACTCTCTTCTCCCCAACCCTGCAGG TAACATCATGTCTCGGGTAACAGAGGACACGTCCACCCTGAGTGATTCTCTGAGTGAGAA TCTGAGCTTATTTCTGTGGTACCTGGTGCGAGGCCTATGTCTCTTGGGGATCATGCTCTG GGGATCAGTGTCCCTCACCATGGTCACCCTGATCACCCTGCCTCTGCTTTTCCTTCTGCC CAAGAAGGTGGGAAAATGGTACCAGGTATGTTCATGGAGTTGGCCCGCTCTACACAGACC CTCATCTCCCAGACTTGGCAGACTCAGTTCCTCTCACATTGCTTTCAGTCCAGCTTTCCT GGCACCCTTACTGATTCTCCATCTTCATGGAACACCCTGTCCCTGTGGTCCATGTTCCCA GGTTGCTCAACATTAACCTCCATACTCTCTGGGTCTTCTTTTCTAGCTTCTCCCCACAAT CTGTCTTTAAGAATTTGATCCCCAACCCGTTCTGAGTCATTTTCCTCTTCCTCGTATTTC TTTAGCATCCAAGGGGCATAGCTGTGTCTCTTTCTCTTTTCTCCTTTTCCTCTGTCTCTT CTCACCTTTAATTTCCAAATAGGTAACTCAGGTATTAGTGTCCCTGATGGTTTGCCAACC CGTGTGACATCTCTTGTCCATGTATCCACAGTTGCTGGAAGTGCAGGTGCGGGAATCTCT GGCAAAGTCCAGCCAGGTGGCCATTGAGGCTCTGTCGGCCATGCCTACAGTTCGAAGCTT TGCCAACGAGGAGGGCGAAGCCCAGAAGTTTAGGGAAAAGCTGCAAGAAATAAAGACACT CAACCAGAAGGAGGCTGTGGCCTATGCAGTCAACTCCTGGACCACTAGTGTGAGCACCTG AAGATGAATACCCATTCCCTTGTCCTTAAGATGCCGTGACTCCATTCCCATTCCTATGAC CCTGCTCCCACTCCTTCTTTACTGGGAAATGGTTGGTTCAGTATTTTCGTCCTAGCAACC TGAGGCTCAATGACTCTACTCAGTGTCCCTAGCCCCCTCCCTCTCTTTAAAGATGCTAGG TGGCTTCCTTTCAGTATGGTACATAAAATCCACCCAACCATGTGGATTGGAGAGATGCGT GTCTTCCAGTCCTAGGGCCTTCCTTTGCCTCTCAGGGGAAGTGCAGGGCGCCATAAATTC TTGCACCTGGGACTGCTTCATGCTGGTACCTTGTAGATTTGTTAGTGAGAGTGATGGGAA TAGTGGAAGCCAGGGATGAGGGACATCTGTGATGCACTGGAAAGAGAGCTACGCCAGTGA TCCGAAGATCCTGGCTTGATGATGCAATTTACTTGTCTTGTGATCATGACAACAAATTTA CCTTCTCTGAGACTGTTTCCTCTTTATTTATTTATTTGTTTGTTTGTTTGTTTATTTTTA CTTATTATTATTATTTTTGAGCTGGAGTCTCGCTTTGTCGCCCAGGCTGGAGTGCAGTGG CGCGATCTGGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCGTTCTCCCGCCTCAGC CTCCTGAGTAGCTGGGACTACAGGCACCCGCCACCACGCCCGGCTAATTTTTTTTTTTTT TTTGTATTTTTAGTAGAGACGAGGTTTCTCCGTGTTAGCCAGGATGGTCTCAATCTCCTG ACCTTGTGATCCGCCCACTTCGGCCTCCCAAAGTGCTGGAATTGCAGGCATGAGCCACTG CGCCCGACTGGTTGTTTCCTCATTTTTCAAAAATGGAGTGATATAACCTTCTTTATAAGG CTCTTCATGTATTAGCTGACATCACATGAATGAAAGCCTTTTGTGAAGAGTAAAATGCTC CCCAGACAAGGTGATAGTGGTGATGGTGGTGAAGATAACTGTGACTTGCATGATGTGCAT TGAGTCAGACTCCATGGGGTCTCTGGTTCATTCTCCTGTCTGCCTATTGAGCCTGCCGAT GTCACTTAGGAGACAGGGACTTGATATTTCCTTCAGGTTAATGACTGTGGTTCTTTGTGT CCCCTCCAGATTTCTCTACCTCAGTCCCTTTTTTTGTGGTCTCTTTATAGATTTCAGGTA TGCTGCTGAAAGTGGGAATCCTCTACATTGGTGGGCAGCTGGTGACCAGTGGGGCTGTAA GCAGTGGGAACCTTGTCACATTTGTTCTCTACCAGATGCAGTTCACCCAGGCTGTGGAGG TGAGGTCCCTCCACCTTCACTCCCCAGTGTGATTCCTTCCTCTGGCCCAGCACCATCTGT GTGATGTCCTTCCATTCTTTACCCTTCTTGCTTCACATAATGCTGGCAAGCAGACTACCT CACTTTCACTATTCTTACCTCCCTCTAGGTACTGCTCTCCATCTACCCCAGAGTACAGAA GGCTGTGGGCTCCTCAGAGAAAATATTTGAGTACCTGGACCGCACCCCTCGCTGCCCACC CAGTGGTCTGTTGACTCCCTTACACTTGGAGGGCCTTGTCCAGTTCCAAGATGTCTCCTT TGCCTACCCAAACCGCCCAGATGTCTTAGTGCTACAGGTACAACCTACCACTCCCTGTAT TCCACTGGCCCCAACTGCAATTCTGCCATCCTAAATTTTCTTCCTGCCTTCAGCCTGCTT ACTGCCAAGCATATATCCTCCCTAACCCTTTAAAGGCAATGGTAGGCATCATCTGTTCCA TAAATCTTCCCCAAACTCAAGAACCCAGTTTGGGCTTCCAAAGAGAATGAGAGAAGAGGT TTCGAAGAGAGTGCTCTCACGTTCCAAGGAATTGCTGCAGCAAAATCTGTGTCTTCGGTC TTCCATCTTTCCTTTTCCTTTGTAATTTGGAATGTGATTTTTCCCTTTCCTGGTGGTATC TGACATCAAGTGTGTGGCATAGTGGTGCTGGGTCTCTGCCCTTGTCTTTGCCGCTTCTTC TATCTCTACTCCTTGGGGAGGCATCACCCAGAAATCTGTGCATGTGGGAGGGTAGGAGTT TCTATATTTCCCTGTTTTTCTTCTGGGGTAAGACATCATGCTATGTAACAAGGCAATGAC ACTCTCAAGGTTAGAGGCCTTGGTAGCCTCTTATCGTGTGCTTCTCTGGCCTCTAGGGGC TGACATTCACCCTACGCCCTGGCGAGGTGACGGCGCTGGTGGGACCCAATGGGTCTGGGA AGAGCACAGTGGCTGCCCTGCTGCAGAATCTGTACCAGCCCACCGGGGGACAGCTGCTGT TGGATGGGAAGCCCCTTCCCCAATATGAGCACCGCTACCTGCACAGGCAGGTATGGAAGC AGGTGGCTTGAAGGAGGGCAGGGAGCATCAAATACGAAGAGCATTCTTACTGAGCACTCT GAAAGAGGGGTTAGGGAATGATAAGAGACCTTGGGTGGAGATGGTGGTGTAGTCAGGAGG GAGGTAGTATGATTTTGTGACATGTTCTCAATAAAGATTTTGAGTCTTCGATCTCTAGAT AACCATACTCCCATGTGCCTTGTTCTATGACTCTTCATCATATTTCATCTCAGGTGGCTG CAGTGGGACAAGAGCCACAGGTATTTGGAAGAAGTCTTCAAGAAAATATTGCCTATGGCC TGACCCAGAAGCCAACTATGGAGGAAATCACAGCTGCTGCAGTAAAGTCTGGGGCCCATA GTTTCATCTCTGGACTCCCTCAGGGCTATGACACAGGTACTCTCTCCACTCATCTCACCA CCCAGCCATCTTTACCTTTGCTGAAACCCCAGTAGTCTTGCCTTTATCCTTCAGTTCCTC CTTACTCATGGACATCAATTTGAAGTTGTAAGATCATGCTCCTATGGCTTCTTCATCCTG ACATCCTCAGGATTCTGTTCATCTTCCCAGAATCTCCCCTATCCAGCTACAACCGTCAGA TCTTGGTGTGTGTGAGTGCGTGAATGCATGAGTGTGTCTGTGTGCATGTACATGCGTGCA CACATGTGGCTATACCGTTCTCATCTTGGCCCTTTGCTCTGCAGAGGTAGACGAGGCTGG GAGCCAGCTGTCAGGGGGTCAGCGACAGGCAGTGGCGTTGGCCCGAGCATTGATCCGGAA ACCGTGTGTACTTATCCTGGATGATGCCACCAGTGCCCTGGATGCAAACAGCCAGTTACA GGTGAGGCAGTCATCTTCTTAATGGCTATATCCCACCCAATCTTGCTTCTTTTATACATC TTCTGTTAGTTTTACTAACATCATAATTATACAAACCAGTCCTTGCAGTTCTCAGTTCCC AAATCCAGTTCCATTGGATGCCTCCCCAAGGAGTAGAGATAGAAGACGAGGCAAAGACAC CTAGAATCAGTTAAAAGAGACTATCTACAAACTACAGACTGAATTTCTTTCTTTCTTTCC TTTTTTTTTTTTAAGACAGTGTCTCACTCAGTTGCCCAGGCTGGAGCGCAGTGGCACAAT CTTGGCTCACTGCAGCTTCAACCTGCTGGGCTCAAGCGATTCTCCCCTCAGCCTCCCGAG TAGCTGGGACTACAGGTGTACACCACTATGCCTGGTTGACTTTTATATTTTTAGTAGAGA TGGGTTTCACCATGTTGCCCAGGCTGGCCTTGAATTCCTGAGCTCAGGTAATCTGCCCCC CTCAGCCTCCCAAAGGGCTGGGGTTATAGGTGTGAGCCACTGCGCCCAGTCCTATAGACT GAATTTCTAAAGCGAAACATAAGGAAAAGACCATCCTCATAATATCGTTTATTTAAAAAA ATTATTTTTTGTACAGACAGCGTCCCGCTATGTTGCCCAGGCTGGCCTTGAACTCCTGGG CCCAAGTGATCCTCCCTCCTTGACCTCCCAAAGTGCTAGGATTATAGGCATGAGCCACCG GGCCCAGCCCATCCTAATCATATTAATATTAATTAAGCTAGTCTGTTTACATGCACTGTC ACTCATTTATTCATTAGGAATCCTTCTGAGCTAGGCATTTATCATCATTCTACAGATGAC AAAATGGAGGTTAAAAGAGGTTGAATAAGCTGCTCATATAGAGGTCATATAGCTTTTGAG TGGCGCAGCCTTGACCCAAATTCAGGTCTGCCTGACTTGAATGCTCATCTCTTTACTACT AAGTTATATTTCCTTAAAATCGAATATAAAAATGCCAAGTCCATGGGTAGAGAAGAGGAC TATTCAATAGTCTTTATTCTTCTGTCACGTGTTTCACCCTAGGGTTCTCATTTTTATCCT ACTTTTGCACCCTTCATGTAAAACAGTCCTTAATGAAACAAAGGGTTTGCGGAGAAGTAC TCAGAATGGGAAACGTTGGTGTCCTTGGGGTTGTTAGCAGAGCCAGCAGTGATCCTGTGA GGTCAGTCCCAGCCCTGGAAACACAGGTGTCTCCCTGGGCTGAGGGTAGTCCCCGGCTCT GACGGTCCGATGTCTTTCCTCAGGTGGAGCAGCTCCTGTACGAAAGCCCTGAGCGGTACT CCCGCTCAGTGCTTCTCATCACCCAGCACCTCAGCCTGGTGGAGCAGGCTGACCACATCC TCTTTCTGGAAGGAGGCGCTATCCGGGAGGGGGGAACCCACCAGCAGCTCATGGAGAAAA AGGGGTGCTACTGGGCCATGGTGCAGGCTCCTGCAGATGCTCCAGAATGAAAGCCTTCTC AGACCTGCGCACTCCATCTCCCTCCCTTTTCTTCTCTCTGTGGTGGAGAACCACAGCTGC AGAGTAGGCAGCTGCCTCCAGGATGAGTTACTTGAAATTTGCCTTGAGTGTGTTACCTCC TTTCCAAGCTCCTCGTGATAATGCAGACTTCCTGGAGTACAAACACAGGATTTGTAATTC CTTACTGTAACGGAGTTTAGAGCCAGGGCTGATGCTTTGGTGTGGCCAGCACTCTGAAAC TGAGAAATGTTCAGAATGTACGGAAAGATGATCAGCTATTTTCAACATAACTGAAGGCAT ATGCTGGCCCATAAACACCCTGTAGGTTCTTGATATTTATAATAAAATTGGTGTTTTGTA CTGTGGTTTCTTATGTTTCCGGCACACCAAACGGCCCACTGCCTTTTGCAGCGCACTTTT CAGCTGCGGATGTCTCCTCTTTTATCATCCTCAATGTTTTACCCCCTAACTGCATCACCT TTTCCCTTAAGCTTTTTAATTCCTATGAGGCCCCTTCCACTTCCCCTATCCCCTTAGGCC CACCCCCAAGAATGTGCAAGACCCCAGCCACAGGGCCCATCAGGGCACTAGCGGCCGCAG CTCAGAGCCGTGGCCTCTCCGAAGTGGCAGATGGGGCGGGCGCGGCCAGAGCAAGTGCCA GGCGGGAACAGAGGGACTGGGCGCGCCTCACAACTCACCACCTCGCCCGCTGGTCCTTCC TGGCTCGCCTGGCTCTGAAGCTGCACCTGGAGGGGAAACCTCAGAACAGTAGGCGGGATT GCCTAGTAAATATCTCCCATTCAGGGAGGCCCAGGTCGTGTGACGTCGACAGTTGCTGGG TAGATGAGGCCAACACAGGTTGCAAGAAGAGGCGGGGTTTAGAGGCGTGAAACTCCGCAG TGCTCAGCCAAGCAGGGAGCAACGCTAGGAAGGGCGGGCAGAAAGGGCACGCTCTTGTGG GTGACTACAGGTTAGGAGACCGTTGAACCTGGAGGGGCCCTAGGATGGACCCCGTGGAAA GATTCAGAGACTGCGCCCTCTCCCTGGCGCCGCCTTCCCCTACACGCGGCGGGTATATTC TGTTGCAGTTGGCCCAGGACCTGTTTCCAAGACTCTGCCCCCTCGCACTTCCGTCCCTCC TGGTTTTGTAAAGTGATGCTCATAGGAACCCCCACCCCGCGTGACACTACTCCCAGCTCC TGGCTGACTTCTAGTCTTCTGGTTGAAGCTGCGCCTTTAGATGACACGACCCTACCCACC CCTGTTTCCAGCGGATGCCCGGGCCTGGAGGTACCTCTTACTGTAACCCATCGCCAAGTG GGCTTTTGAAGGCGCCTGTTCCTTTCTCGCTTTCTTCGGAAGACCCTTGACCCATCATTC CCCCGACCCCCATAACGGGAGAGCAGAGAAGCCGGTCCCCAGTGTGATGGTCCTGGTCCA GGCACTAACTGTCCTTTTCTCGGAAAAGGCAGGGGGATGTGGAAAAGAGTCTTGTTCCCT CCCCTTCGATCTGTGGCTTTCGCTTTCACTTCCTCCTCCGAGAGCGGACAGATCTCTGGG TGCTGGGCGGTCATGGCGCTACTAGATGTATGCGGAGCCCCCCGAGGGCAGCGGCCGGAA TCGGCTCTCCCGGTTGCGGGAAGCGGGCGTCGCTCGGACCCAGGACACTACAGTTTCTCT ATGCGATCTCCAGAGCTCGCTTTACCCCGGGGAATGCAGGTCGGGGCAGTAGGGAAGCCC CTAGGGATGCAGGGAGGCGGGCGCTGAGGAGTGGAGGGTCGCCTGAGAGGAGGAGGCGAG AGCGGGAGCGCGGGGTACAGGGTCGGGGGTAGCCTTCAGTCCCGGAGAGCGCCAGACCCA AAGAAGAGGCCACATGGGGATGGGGCCTGAGAGGAGGAAGTGCAAGTTAGGACAAAGAGT TACAGGTGAGGTGGGGGCTCCCAAAGGAAGACAAGAGAACTTTCCTGCCCTTGTCCACAC ACAAATGGTGGAGCCTTTTTCATGGGGTTATCACATGATATAGGAGGTGTGTGGTGTCTT GGGAAACCTATGAAATTTGCCTGCTGGCCTCCTCTCAGCAACTCACTGTTGCGCGACTTA GAACAAGTCACTTAGTCTAGGTCCCAAGCCCCTCTTCTGTAAAGTGAGGATACTGTTACT AAACGTGTTTTGTGAGGGTTGAATGCTTTATGCATGGAAGAAACCCTTTAAGTCACTCTC AAAATTTTTTAGTAATGGTAACATGTGCTTGCTTTCATTTCTGTTGTGCTGGAAAATGGA AAAGGTTGATACTGGCATGCCTCTTCTTTTCCTTCTCCCAAGCCATTTCCTTCTAGAGAT TGGTTATTAACTGTTTCATTTATTGATGGTTAGATCATTTCTGCATATCTCCTCACCCTC ATACTCCCTAAAACCTTTTCCTGGAGCCTCTTACTACAGAATTTTTCATTGCCTTTCTCA ACCTCTTTTCTCTTATCAGCCCACAGAATTCTTCCAGTCCCTGGGTGGGGACGGAGAAAG GAACGTTCAGATTGAGATGGCCCATGGCACCACCACGCTCGCCTTCAAGTTCCAGCATGG AGTGATTGCAGCAGTGGATTCTCGGGCCTCAGCTGGGTCCTACATTAGTGAGTGTATACG CTCCAGCAGGCAGAATCTGGGGAGCTGGGCTCTCCTTTCCACAGGAGGCCAACTCTGCAA CAAAGTGGAAGTGGATATTGATTTAGGACACACTGGGGGATCTATGGGGTCATCCCTTCT CTCCCAAAGCTCCATCTTCTTCCAGGTGCCTTACGGGTGAACAAGGTGATTGAGATTAAC CCTTACCTGCTTGGCACCATGTCTGGCTGTGCAGCAGACTGTCAGTACTGGGAGCGCCTG CTGGCCAAGGAATGCAGGTAAGCGAGGCCTCTCATCTTCCTTTCTTAGCCTAGTGGTTAA TCCCTGGATCTCTCAGATCATTGCTCCTTACTCTTGTCCTATGTGGTCCATCTTAGTGCT AATAGTATATTTCACAAAACAGCTTTTTGGTGATAAGACCCTTCTCCCAAATCTCAGCCT GTGCTCCACTCATAAGCCAGATAGTACGTCAGGTATTTAGCACTGACACATCCACCCTGG CGGGACAGTATCATTTACTAGGCTGCCTTTGTATGTTTCAGATACTTTAAATTCCAAATC TTTCTCTGATCTTTAGATCCTACAAAATAATTCCTTTCCAATGCTTATCTCTTTAATCAT TTCCTGCCCCATCAAGTTGGAAAGAGCTAACCTCTCTTTCCTCACTCCACCTTGTCCTCA CCCAGGCTGTACTATCTGCGAAATGGAGAACGTATTTCAGTGTCGGCAGCCTCCAAGCTG CTGTCCAACATGATGTGCCAGTACCGGGGCATGGGCCTCTCTATGGGCAGTATGATCTGT GGCTGGGATAAGAAGGTGGGTGCTCTCCATTCTTCATGTTCCCCCACCATGTTCCCTATG GATGACAGATCTGTTTCCCATCATATACTCCTACTCCCTCCCTGACAAGATGCATGGCAT ATAGAGTGCTTGGTTATAGAACTGTTTCAGTATATCCATGGACTATTTATTGGCCCAGAT ATGAATCATTGCATGTGTTTTGTAAGCTTGTCCCTTTTGTTAAACAGTTGATTTCAAGTT TGTTTTTCCTTTTTCATTTCTAAAGTTCGATGACTTTACCAAAGTGGTTTCCTAATTCCA ATGTTCTTGTGGTAATATTAATTCTTTTGTTCACTTTTTATGTCTCATATTTGAACCCCC ATGTTACCAACATCTTCCTCTCCAATTTCAGCCTGAAATCTTTCATCTTATAGGGTCCTG GACTCTACTACGTGGATGAACATGGGACTCGGCTCTCAGGAAATATGTTCTCCACGGGTA GTGGGAACACTTATGCCTACGGGGTCATGGACAGTGGCTATCGGCCTAATCTTAGCCCTG AAGAGGCCTATGACCTTGGCCGCAGGGCTATTGCTTATGCCACTCACAGAGACAGCTATT CTGGAGGCGTTGTCAATAGTAAGAGACCAATGCTCCCACCACCATGCCTGGGAGGAGTCG GCGGGTGGTGGGGGGGGTGATTTAAGATTGAGAAACCAGCCTGGCCAACATGGCGAAACC CCGTCTCTACTAAAACTACAAAAATTAGCCGGACGTGGTGACGGGTGCCTGTAGTCCCAG CTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGTGGAGCTTGCAGTGAG CCAAGATGGCGCCACTGCATTCCAGTCTGGGCCACAGAGTGAGACTCCTTCTCAAAAGAA AAAAAAGAAAATGATTGAGAGACTCAAAGGAGGGAGAGTAGTAGGGAGGAAATTTTCAGA GTCAGAAGAAGGGCATTAAAGGCCCAGTCATATGGTTTTAAGCTTGCGCATGTGTCTTGT TGCTGCCTTCAACATAACATCAGTGACAGGAACTTGCTGAGGTGAAAGGTGACTCCATGT TCTTTTCTCATTTGTCCACAGTGTACCACATGAAGGAAGATGGTTGGGTGAAAGTAGAAA GTACAGATGTCAGTGACCTGCTGCACCAGTACCGGGAAGCCAATCAATAATGGTGGTGGT GGCAGCTGGGCAGGTCTCCTCTGGGAGGTCTTGGCCGACTCAGGGACCTAAGCCACGTTA AGTCCAAGGAGAAGAAGAGGCCTAGCCTGAGCCAAAGAGAGAGTACGGGCTCAGCAGCCA GAGGAGGCCGGTGAAGTGCATCTTCTGCGTGTTCTCTATTTGAACAAGCATTTCCCCCAG GGAAGTTTCTGGGTGCCCCACTAAGTAGAATAAAGAAAAACGGTTATAAATACCTCTGTC TTGTGGCTGAATGGGGTTGGGCCTGTGGTTGTTGGGTGGGGCAGAAAGTAAAGAGACGCT TTTTCTGGAGAAGGGGCTCAGACCCCTATCTAAGAAATGTGGCCTCACCACATAGTTCTT CCTGGGGTTTCCTTCCACACTCATCTCTCCAAGACCTCAGGAAGGCTGCTCATTGCTGTC CATGGACACTTGTTTGCAATTTCACATAGGTTAGGGTCCTTTCCATAGAGAGGCACCTGG GGACTCCTGTGTGTTCCATTGTTAATGGTTTGAGGAACAGGGAGTAGGGCACCTAGGATA ACTGTTTTTGACTTTATAGAGTAGGATGAAAAAGCTTCCACTTCACTTTAATATGGTAAT CATATAAACACCATACCATTTATCCCAAATAACACTTTGGAGATATTGGATATTGAATAT AAAGACAGACATTAAGGGTCTAATTTCATGATGTGTCATGCTGAATTGCAAGATGGCAGG ACTATAATTTTAGAGGAAGAAGAGATCAGGAGGACTCCCCTAAGTGAGGAGTGTGGGGAA AATGTAAAAGATCCAGGTTAGAAGAAAGAGACACACATCATGAGATTTTCGGAATCATGC TGGAACTATGGACCATGTCACTTTCCAGAAAATAAAGGAAACAAATGCTTGAAAGTAGGA GCATGAGCTTGAGCATGGAGCTTTTTTCATTAGAGAGAGATTCTTAAAATGCCAGAATGA ATAGAGTTGTAAAACTTTAGCGAGCCCCTACTTAAAATCCCTCCTCCCCACCACCACTAT TTTAAACTTTAAGTGACTCCTTGGTAGTCACACAGGTAACATTTCAAAATGGTGATCTGG AATCCAAGCGACCCTTCCTTTGGGGAATTTGTTTGTTTGTTTGTTTTTAGTTTGGGAGGT GGTTTCAATCTGAAGAGTCCTTTCTGGAATAAACGAATCTTTCTGTTGCATAGGAAGGCT CTGGGTCAGGAAGGATATTTAAAAACCTAATTACTGTTCTAAACAGTGTTAAAATAGAAC AAGAACCAAAGCTCAGTACGGGGCATTTCCCTCATAGGCTGAAGGTGCGCCCAACATAAT TTGGAGTACAGACTCAGAGGCACCTGAACACGCGCCAGCTCAAGGTGCTCCGGCTGAGAA GGACGGATGAAGATGAACGCTCAGGGCCTACTAAATTCAAAGTCTGTACGTGAAAATCCC CTTTGGCCTGGTGAGATTGGTTGGAACCTTCTATTTAGGAGAGCCCGGCTCGCTCGCCTA AAACTGGAGCTTGCATGGAAGAGGGCACTTTTTTTTTTTTAGACGAAGTCTCACTCTTGT CGCCCAGGCTGGAGTGCAATGACCCGATCTCGGCTCACTGAAACCTCTGCCTCCTGAGTT CAAGCGATTCCCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGTCCGCCACCACG CCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGT CTCGAACCCCTGACCTCAGGCGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGTGATTACA GGCGTGAGCCACCGCGCCGGACCAGAAAGAAGGCACTTCTTAATAGTAGGCTCAGAGCTT GAAGTAGTAACTTTGAGAAAATTCAGTGATTCTCCAATTACAAAGCATTCTCCAATTACA AAGCAAGGACAACAGATAAAGTTGCCCTTGAGACAACTGTATTTTACTTAATGATAAAGA AACATTTTTGCAGTTTTATATCCCAGAGTAACCGCCACTAAAGGCGAGTGAGACTCATTG CAGGCCTGTACAGTGCGAACCAGAGTTCGGGCTCCAGTTCCGCTGTCTGCGGGTCTCGCG CGCCCCCTCCCGGCGGCCCAGCCCAGAATGAAGGCCTTGGCTGGGGAAGCGAAAGCGAAA GCTGCCCGAGCCCTGACGCCCGCCCTGGCCGAGCGTAGCTGGCGGACCAGAGCCGGTAGC GAGGTTGGGAGAGACGGAGCGGACCTCAGCGCTGAAGCAGAAGTCCCCGGAGCTGCGGTC TCCCCGCCGCGGCTGGTGAGTTGGTGCGGAGGGGAACCTGGAGCGCCAACAGGGACGCAG CCCAAGTGACTACCCACTCCACGCTCCTGCTTCCCAGTCCCTCTGCACCCGGCGATAGGA GGGAGCGGAGCCCGGACCACTTAGCTCGCCGCGGCAGGCGGGGGTGGGGGTGGGGGTCCG GGGATTTTTTTTTTTTTTTTTTTTAAGCACGAGGCTCCTGATGGTCATGCTTCCAGCTCC CCAGAAGGCCGAAAGCTGTCTGTCGTAGGAGGGGTGTACGGATGAGCACCGGTTACTCAG GAGAGCTCTCAGGGTTGAATAGGATAAAATGAGAAGCCGATGGACGGGTTAGGCGGAGCC GGGCGGGTAGGAGGGCAGGGACAAGGATTGGGACTCCACCCCCATGATTTCTCATCTCGT ATCCGTTGACAGAGCCATGCGGCTCCCTGACCTGAGACCCTGGACCTCCCTGCTGCTGGT GGACGCGGCTTTACTGTGGCTGCTTCAGGGCCCTCTGGGGACTTTGCTTCCTCAAGGGCT GCCAGGACTATGGCTGGAGGGGACCCTGCGGCTGGGAGGGCTGTGGGGGCTGCTAAAGCT AAGAGGGCTGCTGGGATTTGTGGGGACACTGCTGCTCCCGCTCTGTCTGGCCACCCCCCT GACTGTCTCCCTGAGAGCCCTGGTCGCGGGGGCCTCACGTGCTCCCCCAGCCAGAGTCGC TTCAGCCCCTTGGAGCTGGCTGCTGGTGGGGTACGGGGCTGCGGGGCTCAGCTGGTCACT GTGGGCTGTTCTGAGCCCTCCTGGAGCCCAGGAGAAGGAGCAGGACCAGGTGAACAACAA AGTCTTGATGTGGAGGCTGCTGAAGCTCTCCAGGCCGGACCTGCCTCTCCTCGTTGCCGC CTTCTTCTTCCTTGTCCTTGCTGTTTTGGGTGAGTCAGGAGAGGACGTTGTGAGTTGGAG GTGGTAAAAGGGCCTGGGCACCAGCACATTCTTGTGTTATTTTTCATGCCTCTTTCAGGT GAGACATTAATCCCTCACTATTCTGGTCGTGTGATTGACATCCTGGGAGGTGATTTTGAC CCCCATGCCTTTGCCAGTGCCATCTTCTTCATGTGCCTCTTCTCCTTTGGCAGGTAGGTG GTGGGCAGCTGGGTCCATTTGCTAGCCCCAAATCTTTATAGGGGTCTTCACTTCCCTAAC TCCATTTCTAGGCCCTTTCAGGCGCAAAACACAAAAATACTTAAACTAAAATATGGTGAA TGTAGTCACCATTCTGTTTCATCTATCCATTCATTTCTTCCTTCGTTCATATTCATCCAA TATCTTCAAAGTTTATCTGATCTTATTATAGGAACAAGTTATGAGTGAAGGTAGTACAAA AGGAATTTAAGTCTCAGATGGAATGTCTCTCAGTTGTCTCTCAACATTCCTAGGTCCATG AAATTCCATTTCTTTCTGCCTCCTACCTCCTACCCCTAAGTCTGTCTCCAAAGTATCTCT CCAGGGTCACTCTCTCAGGATGGGTATGCTTCTCCCTCTCACTCTTCTTTCCCAGCTCAT CTTGCTAATCCCTGAAGATCTTACTCTGAGGCTTATCACCTTTCTTTCCAGAATCATTAC TCTTTTCCCTTCACTTGCTTTCCTTTCTCTTTCTAGACATACTCAAACAAACAAACTGTT TGATAAGGCTGGGACTGGGATGAGGTGAGCGAGGCACCTGGGGTGCAAAGTTTAAGGAGG TGTGCACTCACCTTACCCAAATCCCAGCCGGCCTGATTGTCTCTATTTTTATGGTCATAC TTAATTTAGAGTACCCTCGAAAACCATTTCATTGTGCCTTCATTCCATCCTGGCTGCTTT CTGCTGAAACTACAGTCGTGCACTGCATAACGATGTTTAGGTCAATGATGGGCCACATAT AAGATGGTGGACCCACAAGATTATAATACCATATTTTTACTGTACCTTTTCTATGTTTAG ATACACAAATACTTACTTCTGTGTTACAGTCGCCCACAGTGTTAGGTGCAGTCATATGTT GTACAGATTTGTAGCCTAGGAGCAATAGGCTAAACTACATGGCCTAGGTGTGCAGTAGGC TATGACATCTAGGTTTGTGTAAGTACACTCTATGATGTTCATACAACGATGAAACCATCT AACGACACATTTCTCAGAACACATCCCTGTCATTAAAGTACAAACCCTCATTATATCATG TCTGACTATTCCAAACGCCTCTTCAATATGGTAACTAAATTTGTATTAGAAACATATATT TTGTAAAATACATGCTTTTATGCTTTATATTTTTTCCTCTAAGTGTTACTGTAGCATGTA GTTGGTCTAAGAGGGATTTTCCAACTCGAAGGATGACAGATGGGAATCACATGACTCTGG GGCTCCAGAGAATTGTGGGGGCAGGGAATTTATTATTGCAGTTCCCATGATGAAGTATCT ATGATGACAGAGAAGGGCTTTGGGTATGGGGCAGGAAGGAGACCAAGGCGGAGGAGACGC ACAGAGGGACAAGCCTGAGGGACGCTGGGACAGAAGCAAGCACTGGGATACTTGTTTTCA CAATATCTTTTCCCTTCTATTGTAGTTTTCTATTGTGTCTAGTACAGAGTGCACTCCATA AATACTTGTAAATTTGTACATGTTATGATTTTGTTCTCACATCTAGCTCACCATGTCTCC TCTTTCTTCTTCCTCTGTGTATTCCTTACCTCTTCTCTCTCTGTGTGTCTGTCTCTCATT TCTTTCTCTTTTGCCCCTCCTGGCATGCTTTCCCCTGACTTTGCGCTTCTCTGCACTCCT GGCTTGCTCCTCTGTTTCACCCGCTGGCTTGCTCCTTCTCTGCATCTCCCTCCCCTCTTA TTCTCCTACCCCACAGCTCACTGTCTGCAGGCTGCCGAGGAGGCTGCTTCACCTACACCA TGTCTCGAATCAACTTGCGGATCCGGGAGCAGCTTTTCTCCTCCCTGCTGCGCCAGGACC TCGGTTTCTTCCAGGAGACTAAGACAGGTGGGGCCTGGAGTCCAGGTCTGAGATTCCCAT GGACATCCCTTGCCCCTCAGTGACCTTCCACCCACAGCCTCTCCTCCTGCCTTCACCCGT ATGCCAGGACCTGGGGATGCTTTTCTCTTGTTTGGGACAGGGTGGAGAAGCAGCCTCCAC TGTCCCTCTGCAAGTGAAGGAGGATGTTCAGAGGAGGGGGCTGTGTCAGAGGGAACGGTC AGGAGGGAGTTTCTGGGGGCCCTGCAGTACACATGGTTTCCTTTTTCCTCACCTGCTCTG TCCTTCTTAGGGGAGCTGAACTCACGGCTGAGCTCGGATACCACCCTGATGAGTAACTGG CTTCCTTTAAATGCCAATGTGCTCTTGCGAAGCCTGGTGAAAGTGGTGGGGCTGTATGGC TTCATGCTCAGCATATCGCCTCGACTCACCCTCCTTTCTCTGCTGCACATGCCCTTCACA ATAGCAGCGGAGAAGGTGTACAACACCCGCCATCAGGTGAGCGTGCATGTAAGGGAACCC CAAAGGGAGAATAAAACTGACAGGTGAGGAGGCTTCCACATTTGTGGCTAGAGGATCCCC TAGAGAGAGATGTTCTCTTCTCAGCCATTAGGGGAGAAGGTATATTGTAGTATATACTAC ATTTTGTTTGTCCAGCCATCCAACAATGGATATTTGACTTCAGAAGATTCATGATTCTCC AGAACTGTAAACAAAAATGTAAAGTGTATGTGAAGGTATGGGGGAGGGAATAGGAAGGGG AGATGATAGGCGATGATAACTTTTCATTAGCTTCTCAAAGGAGTCTGTACATCCCCCGCC CCCACTGCGAAGATTAAAAATGGTTTCTTAGAGGCTTTTAGGCAGGGAGATTTTCCCTTT AAAATCAGCAGAAGAAGTCTGGATGCAGCATAGGGAAAGGAGGCGTCATCAGGAAGTCCT AAGTCTGAATGTCAGCTCCACCTTCTCTTTTTCTCTTATATTGTGGTAAAACATACATAA CATAAAATTTACCATTTCAACCATTTGAAGTGTACAGTTCAGTGACATTTAGGAAACCCA CATTGTTATTGGGTAGCCATCATCACCATCCATCTCCAGAACTTTTTTCATCTTCCTAAA ATGAAACTCTGTACCCACTAAATAGTAACTGCCTACTACCCCCAACCCCTGGCCGCTGGC AACCTCCATTGTACCTTCTGTCTCCATGAATTGTGATGACTCCCGGTGCGGTACGTAAGT GGAACCATACAGTATTTGTCTTTTTGTGACTGGCATATTTTACTTAGCGTAATGTCTTCA GGCCTCATCCATATTGTAGCATGTGTTAGAATTTCCTCCCTTTTAAGGCTGAATAATATT CTGTTGTGTGCATATATCACATTTTGATTATCCATTCATCTGTCAATGGACATTTGCGTT GTTTCCACCTTTTGGCTGTTGTGAATTATGCTGCTGTGGACATGAGTGTACACCTGTTTG AAACCCTGCTTTTGGTTCTTTTGGGTATATACTTAGAAGTGGAGCTGCTGGATCATATGG CAATTCTATTTAACAATTTTTGAGGAACCATGTATTAGTCCATTTTTACGCTGCTGATAA AGACATACCCAAGATTGGGCAATTTACAAAAGAAAGAGGTTTATTGGACTTACAGTTCCA TGTGGCTGGGAAGACCTCAAATCATGGCGGAAGGTGAAAGACACATTTCACATGGCAGCA GACAAGAGAAAAGACAGCTTGTGCAGGGGAATTCCCCTTTTTAAAACCATTATATCTCGT GAGACTTATTCAATATCACAAGAACAGCATGGGAAAGACTTGCCCTCATGATTCAATTAC CTCCTACCCAGTCCCTCCCACAACACATGGGAATTCAAGATCAGATATGGGTAGGGACAC AGCCAGATCGTATCAAACCACCATACAGTTTTCCATAGCGGCAGCACCATTTTAAATTCC CACCAGCAGTGCATAAGGTTTCCAATTTCTCCACATCCTCATCAACACCACTTTCTGTTG TCTTTTTTTTTAATAGCCATTCTAATGGTGATTAGGTGATTAGGATTATCTCATTGTGGT TTTGATTTGCATTTCCCTAATGATTAGTAAATATTGAGCATCTTTTCGTGTGATTTTGGC CACTTATGTTTCTTTCTTGAAAGAATGTCTGCAAGTTCTTTGCCCATTTTCTGATTTTTT TTTAAGTTGTGGGAGTTCACTATATGTTTTGCCTATTAATTTCCTATCAGATATATGATT CACAAATATTTTCTTGTATTTCATGGTTGCTTTTTCACTCTGTTGCTAGAGTTCTTTGAT GCACAAACGTTTTAAATTCTGATGAAGTCTGATTTATCTATTTTTTGTTGCCTGTGCGTT TGGTGTTATATCCAAGAAATCACTGCCAAATCTAGTGGCATGAGGCTTTTCTTCTACATT TTCCTAGGAGTTTTATAGTGTTAGCTCTTATGTTTAGGCCTCTGATCCATTTGGAATTAC ATCTCCACCTTTCTTAACTATCTGTGGCTCCTTGGGAAAACTACCCTTCTTTCCTGATTC AGACACTGGGGATGGGAAAATTACCTCAAATGAAGGTTAAAAAAATTGCATGTATCTCCT ATACTACCTAACACTGAGAGCTCAATAATATTTTGTTCCCTTGCTCCTTCACTCTTATTC CTTCTGGAAAGAAGAGTAAGGAAGAGGGAGAGAAACAGTTTGGTATTTTTAGGTAGACTA GGGAGCATCTCACTGGCTGGAGTAAGATGTGGGGGCCTGCTGTCTTTGCACATCAGCCCT GGTGTTTGCTGGCCCTCTTTTCCAGGAAGTGCTTCGGGAGATCCAGGATGCAGTGGCCAG GGCGGGGCAGGTGGTGCGGGAAGCCGTTGGAGGGCTGCAGACCGTTCGCAGTTTTGGGGC CGAGGAGCATGAAGTCTGTCGCTATAAAGAGGCCCTTGAACAATGTCGGCAGCTGTATTG GCGGAGAGACCTGGAACGCGCCTTGTACCTGCTCGTAAGGAGGGTAAGATACCAGAGTGG TTGTGAAAGGAGCCCAGGAAAGGGGGAGGGCAAGGGAAGAGGAAACTACAGCTGGTTCTA GAGGCCTTTGCAGCTCAGTCTCATAGAGGCAGAGAGGGGGAAAGAATGGGAAGATTCCCA GCCTCATCTCTTTCTTCTCCTCTTCCAGGTGCTGCACTTGGGGGTGCAGATGCTGATGCT GAGCTGTGGGCTGCAGCAGATGCAGGATGGGGAGCTCACCCAGGGCAGCCTGCTTTCCTT TATGATCTACCAGGAGAGCGTGGGGAGCTATGTGCAGGTGAGCGAGAAGCCAAGCCTGCT CTCCTTTTTTCCCTCTCTTTTTCTTTGTGGACTCCTGGGCCTTGGGCTTTATTTGTTCTT TTTAACAATACAATACAAAACCAAAACCCGCAAGTAATTTTGCTATGGAGAATTTTAAAC ATATGCCAAAAATGAGACAAAATAATATTACAAACTCACATGTATACATCCTGTGCTTTA ACAATGATCAACTCATGCCCAATCTTGTTGGATCTGTATCCCCAGCCACTTCCCCCCACC CATATTATTCTGAAGCAAATCCAAGATATTGTATACTTTCATCTGTAAATATTTCAGTAT GTTTCTTAAAAATACAAACATCTTTAAAAGTGTATAACAACAAAGCCATTATCACACCAA AAAATTAACAGTAGTTCTTAAAATTTATCAAATAGTCAATTGTCAAATTTCCACTTGTGG TATCCATGTAGTATATGTGTATGAGTGTGTTTATTATACTTTGCTTAAATCAGGATCCAG AAATGGTCCACATATTGTGACTGGTTGATACATCTTTTAAGTCTGTCTGTCTATCTATCT ATCCATCCATCTATCCATCCATCCACCCATCAATCCATGTATCTGTCTAAAAGTTTCCCT TGCACAGTTTATTTGTTGAAGAAATAGGTTGTTTGTCCTGTGGAGTTTCTTAGGGTCTGG ATTTTGTTGACTGAATCCCTGTGGTATTATATGCTCTTCTGCCTCTGTACTTCCTGTCTA TTGATAGATAAACCTAGAAGCTTGTGAGATTGAGGGGTTTTTTTTGGTCTTTTTCCAGCA ACAGTACTTTTTAGGTGGTGATGCATTCTTCCTCCAAGAGGCACACAATGTCTGGTTCTC TATTTGTGGCAACATCAGCCACTGATGAGCAGTACCTACATCCATGACAGAATTAGGGCT GCAAAAGGGAGATACTCTATCATTCTTCATGTATTAGCTGAAGTAGTCTATGAAGGGAGA CTTCCCCTCATCTACCATTTCATTACCCGGTGGTACAGTTTGATGAGGAAAGGCAGAGTG AGCATTTAGATCTCTTCCTACATTTACCAGTTCTCAAAAACAGCTACTTCATCCAGGGCT TTATTTAAACATTTTCCTAGACACTTGATAAACATCTTTTTTGTGTAGAGAACTGCGCTG GGCACTCTGACGGCTACAAAGGTGAGTTGGGCACAGTGCCTGCATTTAAGGAGCTCCCCG TCTAATCAAGCAAGACAGAACTGGGCACAAGTAATAGGAAGCAGTAACTGAAAAGATCTG GGGCTAGAGGCAATGCTGTATGGTAGGAGAAGGGACTGTATATCCTTTATATTGCAAATT GGAACACTGGGGTATTGGTGCCACTTTTAAATTCCGTCCAAATTGTACATTTAAAAGTGG AGAATCTCTTTTGAGTATGGAGGAGGAGCAGTGCAGTTGTGAGTGGAGTGTGTGAGGAGT TGGGAGGGTGGTTTCTGGTAGAAGTGTGTTTAATTAGCCGGCTCTCCCATTCCTGTTTTC CAGACCCTGGTATACATATATGGGGATATGCTCAGCAACGTGGGAGCTGCAGAGAAGGTT TTCTCCTACATGGACCGACAGCCAAATCTGCCTTCACCTGGCACGCTTGCCCCCACCACT CTGCAGGGGGTTGTGAAATTCCAAGACGTCTCCTTTGCATATCCCAATCGCCCTGACAGG CCTGTGCTCAAGGTGCCTGAAAGAGGGAGGAAACCTGGACCCTTGCTCTCTGCTGCTAAT GCATAATTGGACATCACAGCCTATAGTTCATTTGCCTCTGAGAACCTGGTCTTGCCTCTG CTAAGAAGAGAAATGGAGGGATTTTGAGGGAGAAGGGGCAGGCCCTTAACTCTTTTTCTG GTTTTCTAGGGGCTGACGTTTACCCTACGTCCTGGTGAGGTGACGGCGCTGGTGGGACCC AATGGGTCTGGGAAGAGCACAGTGGCTGCCCTGCTGCAGAATCTGTACCAGCCCACAGGG GGACAGGTGCTGCTGGATGAAAAGCCCATCTCACAGTATGAACACTGCTACCTGCACAGC CAGGTGGGTGAGGAGGGAGAAGACAGGGGACAGGAGAGGGGAGCATGTACAGAGAGAGGA TGGGAGATCCACGGGAAGGCGCACCAGGTGTTCATTCTGAGGGAGGTAGGTGGGGAGGAC AAAAGGGCCCCTGCCTTGGGGGTTTACACATAGTCCTCTGCCCCTGTCCCTGCTGCACAG GTGGTTTCAGTTGGGCAGGAGCCTGTGCTGTTCTCCGGTTCTGTGAGGAACAACATTGCT TATGGGCTGCAGAGCTGCGAAGATGATAAGGTGATGGCGGCTGCCCAGGCTGCCCACGCA GATGACTTCATCCAGGAAATGGAGCATGGAATATACACAGGTATCTTCTACAAATTGTAA GCTTGCTCCTTCAGTAAAAAAGAGAAAATCAGACTTACTCTTAGTGGTGAAGGTCGTGTC CCTGTAGCTTGATGTTTGCTGTTCCTCTGCCCTTTCCTCCATTCCTACGTCTCCTTCCCC ACACACTGAATTCTTCAGCCTCCCTCTTGATCAAGAGTCTTTGTTTGCAGAGAGCAATGC AGCAGTGGTGCTCCCTCCATGGGCAGCCCCGTCAGGTCCCCACCCCATGGCCCTCCTCCC ACTGGGCCCTCCCCGCACTGGGCCCTCCCACCTCCCGAGGTCCTACTGGAAGTACCTGCT GTGCACTTGTCCCTCCTTGTGTGTTGTCTGTGTCACTTGTATCTGAGGAAGGGAATTTCT CTGATTTCCTCAGATGTAGGGGAGAAGGGAAGCCAGCTGGCTGCGGGACAGAAACAACGT CTGGCCATTGCCCGGGCCCTTGTACGAGACCCGCGGGTCCTCATCCTGGATGAGGCTACT AGTGCCCTAGATGTGCAGTGCGAGCAGGCCGTGAGTACCGTGAGAGGGCAGGGGACAGTG GGGCCTGGGAGGGGCATGCTGGGAGGATCAGACTGTGCAGAATTGGGCAGAGGGAGGACG AAGGACCTACTAGTGGAAACAGTCTGTGCCTTCTTGGGGTTGGGGAATGGAATCCGGTGG TGTGAGGGCAGCCCCAGTTCCCTCCTGGGCTTCCATTCCTCCAGCTGTGGCAGTACAGCC GGGAGAGAAGGGCAGTCCAGGCCTTTATCTACTGCCCTTTCCTACCTTCTTTTATTTCAC ACCTTCTTTACCCTAAATCATAAGAGATGGTGCCCAGGTGGATGTGGTGTCCATCTCATT CCTGTCTTTCTGAGGCACTGTGATCACCCCTTCAGCTGCAGGACTGGAATTCCCGTGGGG ATCGCACAGTGCTGGTGATTGCTCACAGGCTGCAGACAGTTCAGCGCGCCCACCAGATCC TGGTGCTCCAGGAGGGCAAGCTGCAGAAGCTTGCCCAGCTCTAGGAGGGACAGGACCTCT ATTCCCGCCTGGTGCAGCAGCGGCTGATGGACTGAGGCCCCAGGGATACTGGGCCCTCTT CTCAGGGGCGTCTCCAGGACCCAGAGCTGTTCCTGCTTTGAGTTTCCCTAGAGCTGTGCG GCCAGATAGCTGTTCCTGAGTTGCAGGCACGATGGAGATTTGGACACTGTGTGCTTTTGG TGGGGTAGAGAGGTGGGGTGGGGTGGGGTGGGGGCTGTCTGTGTCCAGGAAACTTAATTC CCTGGTGACTAGAGCTTTGCCTGGTGATGAGGAGTATTTTGTGGCATAATACATATATTT TAAAATATTTTCCTTCTTACATGAACTGTATACATTCATATAGAAAATTTAGACAATATA AAAAAGTACAAAGAAGAAAAGTAAAAGTACCCATTGTTTCACTTCCTGGAGATAACCATA GTTGCTATTTTGCTGCCTGT gff2aplot-2.0.orig/examples/mhcregion/mhc2labels.rc0000664000000000000000000000006707667662611022315 0ustar rootroot00000000000000# # L # group_x_label_angle=45 group_y_label_angle=315 gff2aplot-2.0.orig/examples/mhcregion/mhc2+sgp1.rc0000664000000000000000000000156507667662611022004 0ustar rootroot00000000000000# # L # zoom_marks=on aplot_box_bgcolor=verypaleviolet percent_box_bgcolor=verypaleviolet percent_box_score_range=0.2..1.0 major_tickmark_score=0.2 minor_tickmark_score=0.05 # # S # sgp::source_layer=1 genbank::source_layer=2 # # G # /.*polyA.*/::show_group_label=on /.*polyA.*/::group_shape=bracket /.*polyA.*/::show_group_limits=on /.*Gene.*/::show_group_label=off /.*Gene.*/::group_shape=none # # F # /^p(First|Internal|Terminal)$/::feature_color=red /^p(First|Internal|Terminal)$/::feature_shape=box /^p(First|Internal|Terminal)$/::show_ribbons=on /^p(First|Internal|Terminal)$/::ribbon_color=verylightred /^(First|Internal|Terminal)$/::feature_color=lightgreen /^(polya|3'-utr|First|Internal|Terminal)$/::feature_shape=half_box /^(First|Internal|Terminal)$/::ribbon_color=limegreen 3'-utr::show_ribbons=on 3'-utr::ribbon_color=grey polya::show_ribbons=on polya::ribbon_color=grey gff2aplot-2.0.orig/examples/mhcregion/kk.sim0000664000000000000000000024245107667662612021100 0ustar rootroot00000000000000##gff-version 2 ##source-version /home/ug/jabril/development/softjabril/gfftools/gff2aplot/dist/ftp/gff2aplot-v2_0/bin/ali2gff ##date Jun/03/2003 14:44:36 ## ##/home/ug/jabril/development/softjabril/gfftools/gff2aplot/dist/ftp/gff2aplot-v2_0/bin/ali2gff -x X87344 -y AF100956+AF027865 hs-mm.sim #name1:name2 source feature beg1:beg2 end1:end2 score strand frame group comment X87344:AF100956+AF027865 sim96_LIN seqbounds 1:1 32000:35000 . . . X87344:AF100956+AF027865 sim96_LIN alignment 863:804 19762:20115 18340.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 863:804 890:831 0.790 +:+ .:. ## cumulative nmp: 0.001 X87344:AF100956+AF027865 sim96_LIN fragment 892:832 1055:995 0.850 +:+ .:. ## cumulative nmp: 0.008 X87344:AF100956+AF027865 sim96_LIN fragment 1057:996 1072:1011 0.810 +:+ .:. ## cumulative nmp: 0.009 X87344:AF100956+AF027865 sim96_LIN fragment 1073:1019 1089:1035 0.650 +:+ .:. ## cumulative nmp: 0.010 X87344:AF100956+AF027865 sim96_LIN fragment 1095:1036 1137:1078 0.600 +:+ .:. ## cumulative nmp: 0.011 X87344:AF100956+AF027865 sim96_LIN fragment 1141:1079 1169:1107 0.620 +:+ .:. ## cumulative nmp: 0.012 X87344:AF100956+AF027865 sim96_LIN fragment 1224:1108 1254:1138 0.710 +:+ .:. ## cumulative nmp: 0.013 X87344:AF100956+AF027865 sim96_LIN fragment 1272:1139 1292:1159 0.710 +:+ .:. ## cumulative nmp: 0.014 X87344:AF100956+AF027865 sim96_LIN fragment 1293:1164 1316:1187 0.710 +:+ .:. ## cumulative nmp: 0.015 X87344:AF100956+AF027865 sim96_LIN fragment 1317:1193 1322:1198 0.830 +:+ .:. ## cumulative nmp: 0.015 X87344:AF100956+AF027865 sim96_LIN fragment 1414:1199 1435:1220 0.590 +:+ .:. ## cumulative nmp: 0.016 X87344:AF100956+AF027865 sim96_LIN fragment 1506:1221 1533:1248 0.570 +:+ .:. ## cumulative nmp: 0.017 X87344:AF100956+AF027865 sim96_LIN fragment 1696:1249 1773:1326 0.680 +:+ .:. ## cumulative nmp: 0.019 X87344:AF100956+AF027865 sim96_LIN fragment 1774:1330 1803:1359 0.670 +:+ .:. ## cumulative nmp: 0.020 X87344:AF100956+AF027865 sim96_LIN fragment 1804:1364 1830:1390 0.700 +:+ .:. ## cumulative nmp: 0.021 X87344:AF100956+AF027865 sim96_LIN fragment 1831:1456 1845:1470 0.670 +:+ .:. ## cumulative nmp: 0.022 X87344:AF100956+AF027865 sim96_LIN fragment 1846:1623 1916:1693 0.790 +:+ .:. ## cumulative nmp: 0.025 X87344:AF100956+AF027865 sim96_LIN fragment 1917:1695 2088:1866 0.830 +:+ .:. ## cumulative nmp: 0.032 X87344:AF100956+AF027865 sim96_LIN fragment 2089:1868 2108:1887 0.750 +:+ .:. ## cumulative nmp: 0.033 X87344:AF100956+AF027865 sim96_LIN fragment 2109:1891 2130:1912 0.640 +:+ .:. ## cumulative nmp: 0.034 X87344:AF100956+AF027865 sim96_LIN fragment 2131:1936 2163:1968 0.480 +:+ .:. ## cumulative nmp: 0.035 X87344:AF100956+AF027865 sim96_LIN fragment 2164:2011 2180:2027 0.760 +:+ .:. ## cumulative nmp: 0.035 X87344:AF100956+AF027865 sim96_LIN fragment 2181:2057 2194:2070 0.790 +:+ .:. ## cumulative nmp: 0.036 X87344:AF100956+AF027865 sim96_LIN fragment 2195:2134 2283:2222 0.670 +:+ .:. ## cumulative nmp: 0.039 X87344:AF100956+AF027865 sim96_LIN fragment 2290:2223 2482:2415 0.730 +:+ .:. ## cumulative nmp: 0.046 X87344:AF100956+AF027865 sim96_LIN fragment 2483:2419 2493:2429 0.910 +:+ .:. ## cumulative nmp: 0.047 X87344:AF100956+AF027865 sim96_LIN fragment 2501:2430 2509:2438 0.670 +:+ .:. ## cumulative nmp: 0.047 X87344:AF100956+AF027865 sim96_LIN fragment 2510:2444 2533:2467 0.670 +:+ .:. ## cumulative nmp: 0.048 X87344:AF100956+AF027865 sim96_LIN fragment 2541:2468 2601:2528 0.640 +:+ .:. ## cumulative nmp: 0.050 X87344:AF100956+AF027865 sim96_LIN fragment 2602:2536 2637:2571 0.530 +:+ .:. ## cumulative nmp: 0.051 X87344:AF100956+AF027865 sim96_LIN fragment 2641:2572 2705:2636 0.650 +:+ .:. ## cumulative nmp: 0.053 X87344:AF100956+AF027865 sim96_LIN fragment 2706:2640 2741:2675 0.860 +:+ .:. ## cumulative nmp: 0.055 X87344:AF100956+AF027865 sim96_LIN fragment 2744:2676 2763:2695 0.900 +:+ .:. ## cumulative nmp: 0.056 X87344:AF100956+AF027865 sim96_LIN fragment 2764:2697 2826:2759 0.670 +:+ .:. ## cumulative nmp: 0.058 X87344:AF100956+AF027865 sim96_LIN fragment 2832:2760 2850:2778 0.580 +:+ .:. ## cumulative nmp: 0.059 X87344:AF100956+AF027865 sim96_LIN fragment 2873:2779 2884:2790 0.580 +:+ .:. ## cumulative nmp: 0.059 X87344:AF100956+AF027865 sim96_LIN fragment 2885:2792 2907:2814 0.830 +:+ .:. ## cumulative nmp: 0.060 X87344:AF100956+AF027865 sim96_LIN fragment 2908:2816 2941:2849 0.500 +:+ .:. ## cumulative nmp: 0.061 X87344:AF100956+AF027865 sim96_LIN fragment 2972:2850 2981:2859 0.800 +:+ .:. ## cumulative nmp: 0.061 X87344:AF100956+AF027865 sim96_LIN fragment 2998:2860 3006:2868 0.780 +:+ .:. ## cumulative nmp: 0.062 X87344:AF100956+AF027865 sim96_LIN fragment 3009:2869 3209:3069 0.820 +:+ .:. ## cumulative nmp: 0.070 X87344:AF100956+AF027865 sim96_LIN fragment 3210:3166 3265:3221 0.480 +:+ .:. ## cumulative nmp: 0.072 X87344:AF100956+AF027865 sim96_LIN fragment 3266:3231 3286:3251 0.670 +:+ .:. ## cumulative nmp: 0.073 X87344:AF100956+AF027865 sim96_LIN fragment 3319:3252 3331:3264 0.690 +:+ .:. ## cumulative nmp: 0.073 X87344:AF100956+AF027865 sim96_LIN fragment 3346:3265 3363:3282 0.610 +:+ .:. ## cumulative nmp: 0.074 X87344:AF100956+AF027865 sim96_LIN fragment 3364:3307 3385:3328 0.550 +:+ .:. ## cumulative nmp: 0.074 X87344:AF100956+AF027865 sim96_LIN fragment 3404:3329 3430:3355 0.590 +:+ .:. ## cumulative nmp: 0.075 X87344:AF100956+AF027865 sim96_LIN fragment 3437:3356 3455:3374 0.630 +:+ .:. ## cumulative nmp: 0.076 X87344:AF100956+AF027865 sim96_LIN fragment 3464:3375 3510:3421 0.510 +:+ .:. ## cumulative nmp: 0.077 X87344:AF100956+AF027865 sim96_LIN fragment 3518:3422 3527:3431 0.700 +:+ .:. ## cumulative nmp: 0.077 X87344:AF100956+AF027865 sim96_LIN fragment 3530:3432 3578:3480 0.530 +:+ .:. ## cumulative nmp: 0.079 X87344:AF100956+AF027865 sim96_LIN fragment 3579:3490 3598:3509 0.600 +:+ .:. ## cumulative nmp: 0.079 X87344:AF100956+AF027865 sim96_LIN fragment 3599:3576 3627:3604 0.550 +:+ .:. ## cumulative nmp: 0.080 X87344:AF100956+AF027865 sim96_LIN fragment 3628:3617 3641:3630 0.640 +:+ .:. ## cumulative nmp: 0.081 X87344:AF100956+AF027865 sim96_LIN fragment 3642:3641 3649:3648 0.880 +:+ .:. ## cumulative nmp: 0.081 X87344:AF100956+AF027865 sim96_LIN fragment 3650:3749 3689:3788 0.630 +:+ .:. ## cumulative nmp: 0.082 X87344:AF100956+AF027865 sim96_LIN fragment 3690:3833 3708:3851 0.530 +:+ .:. ## cumulative nmp: 0.083 X87344:AF100956+AF027865 sim96_LIN fragment 3709:3862 3748:3901 0.630 +:+ .:. ## cumulative nmp: 0.084 X87344:AF100956+AF027865 sim96_LIN fragment 3749:3905 3777:3933 0.660 +:+ .:. ## cumulative nmp: 0.085 X87344:AF100956+AF027865 sim96_LIN fragment 3778:3937 3831:3990 0.520 +:+ .:. ## cumulative nmp: 0.087 X87344:AF100956+AF027865 sim96_LIN fragment 3835:3991 3860:4016 0.690 +:+ .:. ## cumulative nmp: 0.088 X87344:AF100956+AF027865 sim96_LIN fragment 3862:4017 3878:4033 0.710 +:+ .:. ## cumulative nmp: 0.088 X87344:AF100956+AF027865 sim96_LIN fragment 3879:4035 3902:4058 0.670 +:+ .:. ## cumulative nmp: 0.089 X87344:AF100956+AF027865 sim96_LIN fragment 3906:4059 3938:4091 0.640 +:+ .:. ## cumulative nmp: 0.090 X87344:AF100956+AF027865 sim96_LIN fragment 3939:4096 3951:4108 0.770 +:+ .:. ## cumulative nmp: 0.091 X87344:AF100956+AF027865 sim96_LIN fragment 3954:4109 3975:4130 0.640 +:+ .:. ## cumulative nmp: 0.091 X87344:AF100956+AF027865 sim96_LIN fragment 3979:4131 4008:4160 0.730 +:+ .:. ## cumulative nmp: 0.093 X87344:AF100956+AF027865 sim96_LIN fragment 4041:4161 4066:4186 0.500 +:+ .:. ## cumulative nmp: 0.093 X87344:AF100956+AF027865 sim96_LIN fragment 4067:4192 4145:4270 0.590 +:+ .:. ## cumulative nmp: 0.096 X87344:AF100956+AF027865 sim96_LIN fragment 4152:4271 4219:4338 0.660 +:+ .:. ## cumulative nmp: 0.098 X87344:AF100956+AF027865 sim96_LIN fragment 4221:4339 4325:4443 0.810 +:+ .:. ## cumulative nmp: 0.102 X87344:AF100956+AF027865 sim96_LIN fragment 4328:4444 4357:4473 0.700 +:+ .:. ## cumulative nmp: 0.104 X87344:AF100956+AF027865 sim96_LIN fragment 4359:4474 4393:4508 0.570 +:+ .:. ## cumulative nmp: 0.105 X87344:AF100956+AF027865 sim96_LIN fragment 4398:4509 4415:4526 0.780 +:+ .:. ## cumulative nmp: 0.105 X87344:AF100956+AF027865 sim96_LIN fragment 4419:4527 4435:4543 0.590 +:+ .:. ## cumulative nmp: 0.106 X87344:AF100956+AF027865 sim96_LIN fragment 4440:4544 4455:4559 0.560 +:+ .:. ## cumulative nmp: 0.106 X87344:AF100956+AF027865 sim96_LIN fragment 4517:4560 4548:4591 0.560 +:+ .:. ## cumulative nmp: 0.107 X87344:AF100956+AF027865 sim96_LIN fragment 4572:4592 4583:4603 0.670 +:+ .:. ## cumulative nmp: 0.108 X87344:AF100956+AF027865 sim96_LIN fragment 4624:4604 4639:4619 0.690 +:+ .:. ## cumulative nmp: 0.108 X87344:AF100956+AF027865 sim96_LIN fragment 4678:4620 4720:4662 0.470 +:+ .:. ## cumulative nmp: 0.109 X87344:AF100956+AF027865 sim96_LIN fragment 4723:4663 4738:4678 0.750 +:+ .:. ## cumulative nmp: 0.110 X87344:AF100956+AF027865 sim96_LIN fragment 4747:4679 4772:4704 0.690 +:+ .:. ## cumulative nmp: 0.111 X87344:AF100956+AF027865 sim96_LIN fragment 4774:4705 4811:4742 0.550 +:+ .:. ## cumulative nmp: 0.112 X87344:AF100956+AF027865 sim96_LIN fragment 4813:4743 4829:4759 0.760 +:+ .:. ## cumulative nmp: 0.113 X87344:AF100956+AF027865 sim96_LIN fragment 4834:4760 4862:4788 0.760 +:+ .:. ## cumulative nmp: 0.114 X87344:AF100956+AF027865 sim96_LIN fragment 4863:4790 4870:4797 0.630 +:+ .:. ## cumulative nmp: 0.114 X87344:AF100956+AF027865 sim96_LIN fragment 4874:4798 4890:4814 0.880 +:+ .:. ## cumulative nmp: 0.115 X87344:AF100956+AF027865 sim96_LIN fragment 4916:4815 4926:4825 0.820 +:+ .:. ## cumulative nmp: 0.115 X87344:AF100956+AF027865 sim96_LIN fragment 4927:4829 4942:4844 0.630 +:+ .:. ## cumulative nmp: 0.116 X87344:AF100956+AF027865 sim96_LIN fragment 4951:4845 4969:4863 0.790 +:+ .:. ## cumulative nmp: 0.117 X87344:AF100956+AF027865 sim96_LIN fragment 4984:4864 5008:4888 0.520 +:+ .:. ## cumulative nmp: 0.117 X87344:AF100956+AF027865 sim96_LIN fragment 5019:4889 5059:4929 0.800 +:+ .:. ## cumulative nmp: 0.119 X87344:AF100956+AF027865 sim96_LIN fragment 5062:4930 5074:4942 0.690 +:+ .:. ## cumulative nmp: 0.120 X87344:AF100956+AF027865 sim96_LIN fragment 5075:4950 5101:4976 0.590 +:+ .:. ## cumulative nmp: 0.120 X87344:AF100956+AF027865 sim96_LIN fragment 5102:4978 5139:5015 0.630 +:+ .:. ## cumulative nmp: 0.122 X87344:AF100956+AF027865 sim96_LIN fragment 5143:5016 5164:5037 0.550 +:+ .:. ## cumulative nmp: 0.122 X87344:AF100956+AF027865 sim96_LIN fragment 5196:5038 5222:5064 0.810 +:+ .:. ## cumulative nmp: 0.123 X87344:AF100956+AF027865 sim96_LIN fragment 5226:5065 5253:5092 0.610 +:+ .:. ## cumulative nmp: 0.124 X87344:AF100956+AF027865 sim96_LIN fragment 5255:5093 5265:5103 0.910 +:+ .:. ## cumulative nmp: 0.125 X87344:AF100956+AF027865 sim96_LIN fragment 5266:5105 5278:5117 0.690 +:+ .:. ## cumulative nmp: 0.125 X87344:AF100956+AF027865 sim96_LIN fragment 5300:5118 5316:5134 0.710 +:+ .:. ## cumulative nmp: 0.126 X87344:AF100956+AF027865 sim96_LIN fragment 5319:5135 5347:5163 0.550 +:+ .:. ## cumulative nmp: 0.127 X87344:AF100956+AF027865 sim96_LIN fragment 5348:5165 5363:5180 0.810 +:+ .:. ## cumulative nmp: 0.127 X87344:AF100956+AF027865 sim96_LIN fragment 5376:5181 5393:5198 0.610 +:+ .:. ## cumulative nmp: 0.128 X87344:AF100956+AF027865 sim96_LIN fragment 5404:5199 5421:5216 0.560 +:+ .:. ## cumulative nmp: 0.129 X87344:AF100956+AF027865 sim96_LIN fragment 5422:5219 5442:5239 0.480 +:+ .:. ## cumulative nmp: 0.129 X87344:AF100956+AF027865 sim96_LIN fragment 5457:5240 5466:5249 0.800 +:+ .:. ## cumulative nmp: 0.129 X87344:AF100956+AF027865 sim96_LIN fragment 5469:5250 5486:5267 0.830 +:+ .:. ## cumulative nmp: 0.130 X87344:AF100956+AF027865 sim96_LIN fragment 5503:5268 5514:5279 0.920 +:+ .:. ## cumulative nmp: 0.131 X87344:AF100956+AF027865 sim96_LIN fragment 5516:5280 5542:5306 0.520 +:+ .:. ## cumulative nmp: 0.132 X87344:AF100956+AF027865 sim96_LIN fragment 5548:5307 5551:5310 1.000 +:+ .:. ## cumulative nmp: 0.132 X87344:AF100956+AF027865 sim96_LIN fragment 5552:5313 5562:5323 0.820 +:+ .:. ## cumulative nmp: 0.132 X87344:AF100956+AF027865 sim96_LIN fragment 5564:5324 5589:5349 0.580 +:+ .:. ## cumulative nmp: 0.133 X87344:AF100956+AF027865 sim96_LIN fragment 5590:5360 5610:5380 0.860 +:+ .:. ## cumulative nmp: 0.134 X87344:AF100956+AF027865 sim96_LIN fragment 5657:5381 5670:5394 0.710 +:+ .:. ## cumulative nmp: 0.134 X87344:AF100956+AF027865 sim96_LIN fragment 5671:5423 5684:5436 0.710 +:+ .:. ## cumulative nmp: 0.135 X87344:AF100956+AF027865 sim96_LIN fragment 5685:5447 5731:5493 0.660 +:+ .:. ## cumulative nmp: 0.137 X87344:AF100956+AF027865 sim96_LIN fragment 5732:5498 5771:5537 0.750 +:+ .:. ## cumulative nmp: 0.138 X87344:AF100956+AF027865 sim96_LIN fragment 5780:5538 5793:5551 0.860 +:+ .:. ## cumulative nmp: 0.139 X87344:AF100956+AF027865 sim96_LIN fragment 5795:5552 5844:5601 0.660 +:+ .:. ## 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X87344:AF100956+AF027865 sim96_LIN fragment 19046:3724 19081:3759 0.670 +:+ .:. ## cumulative nmp: 0.395 X87344:AF100956+AF027865 sim96_LIN fragment 19083:3760 19107:3784 0.880 +:+ .:. ## cumulative nmp: 0.756 X87344:AF100956+AF027865 sim96_LIN alignment 8422:33675 8541:33738 248.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8422:33675 8449:33702 0.930 +:+ .:. ## cumulative nmp: 0.283 X87344:AF100956+AF027865 sim96_LIN fragment 8506:33703 8541:33738 0.750 +:+ .:. ## cumulative nmp: 0.577 X87344:AF100956+AF027865 sim96_LIN alignment 8424:33675 8541:33736 248.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8424:33675 8449:33700 0.960 +:+ .:. ## cumulative nmp: 0.277 X87344:AF100956+AF027865 sim96_LIN fragment 8506:33701 8541:33736 0.750 +:+ .:. ## cumulative nmp: 0.577 X87344:AF100956+AF027865 sim96_LIN alignment 10848:26928 10917:27004 246.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10848:26928 10876:26956 0.790 +:+ .:. ## cumulative nmp: 0.314 X87344:AF100956+AF027865 sim96_LIN fragment 10877:26964 10917:27004 0.680 +:+ .:. ## cumulative nmp: 0.696 X87344:AF100956+AF027865 sim96_LIN alignment 10639:26917 10729:26993 242.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10639:26917 10679:26957 0.730 +:+ .:. ## cumulative nmp: 0.356 X87344:AF100956+AF027865 sim96_LIN fragment 10694:26958 10729:26993 0.690 +:+ .:. ## cumulative nmp: 0.652 X87344:AF100956+AF027865 sim96_LIN alignment 13143:13194 13208:13259 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13143:13194 13208:13259 0.680 +:+ .:. ## cumulative nmp: 0.680 X87344:AF100956+AF027865 sim96_LIN alignment 13982:26951 14035:27004 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13982:26951 14035:27004 0.720 +:+ .:. ## cumulative nmp: 0.720 X87344:AF100956+AF027865 sim96_LIN alignment 8504:33673 8541:33710 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8504:33673 8541:33710 0.820 +:+ .:. ## cumulative nmp: 0.820 X87344:AF100956+AF027865 sim96_LIN alignment 8508:33675 8541:33708 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8508:33675 8541:33708 0.850 +:+ .:. ## cumulative nmp: 0.850 X87344:AF100956+AF027865 sim96_LIN alignment 8510:33675 8541:33706 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8510:33675 8541:33706 0.880 +:+ .:. ## cumulative nmp: 0.880 X87344:AF100956+AF027865 sim96_LIN alignment 8419:33674 8448:33703 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8419:33674 8448:33703 0.900 +:+ .:. ## cumulative nmp: 0.900 X87344:AF100956+AF027865 sim96_LIN alignment 3488:8955 3537:9004 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3488:8955 3537:9004 0.740 +:+ .:. ## cumulative nmp: 0.740 X87344:AF100956+AF027865 sim96_LIN alignment 2:26921 61:26980 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 2:26921 61:26980 0.700 +:+ .:. ## cumulative nmp: 0.700 X87344:AF100956+AF027865 sim96_LIN alignment 20521:22071 20665:22164 238.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 20521:22071 20556:22106 0.810 +:+ .:. ## cumulative nmp: 0.245 X87344:AF100956+AF027865 sim96_LIN fragment 20593:22107 20621:22135 0.620 +:+ .:. ## cumulative nmp: 0.396 X87344:AF100956+AF027865 sim96_LIN fragment 20637:22136 20665:22164 0.790 +:+ .:. ## cumulative nmp: 0.589 X87344:AF100956+AF027865 sim96_LIN alignment 13138:13384 13202:13447 238.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13138:13384 13185:13431 0.730 +:+ .:. ## cumulative nmp: 0.548 X87344:AF100956+AF027865 sim96_LIN fragment 13187:13432 13202:13447 0.750 +:+ .:. ## cumulative nmp: 0.735 X87344:AF100956+AF027865 sim96_LIN alignment 22:7484 61:7525 236.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 22:7484 36:7498 0.870 +:+ .:. ## cumulative nmp: 0.318 X87344:AF100956+AF027865 sim96_LIN fragment 37:7501 61:7525 0.880 +:+ .:. ## cumulative nmp: 0.855 X87344:AF100956+AF027865 sim96_LIN alignment 1:22942 39:22980 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22942 39:22980 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 21191:26946 21247:27002 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 21191:26946 21247:27002 0.700 +:+ .:. ## cumulative nmp: 0.700 X87344:AF100956+AF027865 sim96_LIN alignment 20124:20375 20164:20415 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 20124:20375 20164:20415 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 13146:13368 13198:13420 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:13368 13198:13420 0.720 +:+ .:. ## cumulative nmp: 0.720 X87344:AF100956+AF027865 sim96_LIN alignment 13146:13129 13198:13181 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:13129 13198:13181 0.720 +:+ .:. ## cumulative nmp: 0.720 X87344:AF100956+AF027865 sim96_LIN alignment 13146:12859 13190:12903 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:12859 13190:12903 0.760 +:+ .:. ## cumulative nmp: 0.760 X87344:AF100956+AF027865 sim96_LIN alignment 8505:33676 8541:33712 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8505:33676 8541:33712 0.810 +:+ .:. ## cumulative nmp: 0.810 X87344:AF100956+AF027865 sim96_LIN alignment 3:22919 41:22957 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3:22919 41:22957 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 1542:26928 1621:27033 228.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1542:26928 1575:26961 0.760 +:+ .:. ## cumulative nmp: 0.278 X87344:AF100956+AF027865 sim96_LIN fragment 1576:26978 1590:26992 0.670 +:+ .:. ## cumulative nmp: 0.386 X87344:AF100956+AF027865 sim96_LIN fragment 1591:27003 1621:27033 0.770 +:+ .:. ## cumulative nmp: 0.643 X87344:AF100956+AF027865 sim96_LIN alignment 3225:26925 3279:26993 222.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3225:26925 3250:26950 0.880 +:+ .:. ## cumulative nmp: 0.369 X87344:AF100956+AF027865 sim96_LIN fragment 3251:26963 3257:26969 1.000 +:+ .:. ## cumulative nmp: 0.482 X87344:AF100956+AF027865 sim96_LIN fragment 3258:26972 3279:26993 0.730 +:+ .:. ## cumulative nmp: 0.741 X87344:AF100956+AF027865 sim96_LIN alignment 8484:33673 8541:33730 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8484:33673 8541:33730 0.690 +:+ .:. ## cumulative nmp: 0.690 X87344:AF100956+AF027865 sim96_LIN alignment 8488:33675 8541:33728 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8488:33675 8541:33728 0.700 +:+ .:. ## cumulative nmp: 0.700 X87344:AF100956+AF027865 sim96_LIN alignment 8490:33675 8541:33726 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8490:33675 8541:33726 0.710 +:+ .:. ## cumulative nmp: 0.710 X87344:AF100956+AF027865 sim96_LIN alignment 8492:33675 8541:33724 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8492:33675 8541:33724 0.720 +:+ .:. ## cumulative nmp: 0.720 X87344:AF100956+AF027865 sim96_LIN alignment 13146:13049 13211:13114 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:13049 13211:13114 0.670 +:+ .:. ## cumulative nmp: 0.670 X87344:AF100956+AF027865 sim96_LIN alignment 13147:13176 13190:13219 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13147:13176 13190:13219 0.750 +:+ .:. ## cumulative nmp: 0.750 X87344:AF100956+AF027865 sim96_LIN alignment 13146:12987 13189:13030 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:12987 13189:13030 0.750 +:+ .:. ## cumulative nmp: 0.750 X87344:AF100956+AF027865 sim96_LIN alignment 21188:1978 21314:2121 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 21188:1978 21203:1993 0.750 +:+ .:. ## cumulative nmp: 0.089 X87344:AF100956+AF027865 sim96_LIN fragment 21207:1994 21224:2011 0.830 +:+ .:. ## cumulative nmp: 0.200 X87344:AF100956+AF027865 sim96_LIN fragment 21225:2013 21249:2037 0.720 +:+ .:. ## cumulative nmp: 0.333 X87344:AF100956+AF027865 sim96_LIN fragment 21250:2058 21285:2093 0.640 +:+ .:. ## cumulative nmp: 0.504 X87344:AF100956+AF027865 sim96_LIN fragment 21287:2094 21314:2121 0.680 +:+ .:. ## cumulative nmp: 0.645 X87344:AF100956+AF027865 sim96_LIN alignment 21212:7539 21313:7630 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 21212:7539 21252:7579 0.710 +:+ .:. ## cumulative nmp: 0.300 X87344:AF100956+AF027865 sim96_LIN fragment 21260:7580 21280:7600 0.670 +:+ .:. ## cumulative nmp: 0.445 X87344:AF100956+AF027865 sim96_LIN fragment 21284:7601 21313:7630 0.700 +:+ .:. ## cumulative nmp: 0.662 X87344:AF100956+AF027865 sim96_LIN alignment 13146:28666 13183:28703 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:28666 13183:28703 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 13137:28653 13184:28700 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13137:28653 13184:28700 0.730 +:+ .:. ## cumulative nmp: 0.730 X87344:AF100956+AF027865 sim96_LIN alignment 10647:22928 10698:22979 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10647:22928 10698:22979 0.710 +:+ .:. ## cumulative nmp: 0.710 X87344:AF100956+AF027865 sim96_LIN alignment 10634:22934 10683:22983 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10634:22934 10683:22983 0.720 +:+ .:. ## cumulative nmp: 0.720 X87344:AF100956+AF027865 sim96_LIN alignment 10645:26927 10678:26960 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10645:26927 10678:26960 0.820 +:+ .:. ## cumulative nmp: 0.820 X87344:AF100956+AF027865 sim96_LIN alignment 10636:26922 10673:26959 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10636:26922 10673:26959 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 9929:30500 10040:30611 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 9929:30500 10040:30611 0.600 +:+ .:. ## cumulative nmp: 0.600 X87344:AF100956+AF027865 sim96_LIN alignment 8494:33675 8541:33722 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8494:33675 8541:33722 0.730 +:+ .:. ## cumulative nmp: 0.730 X87344:AF100956+AF027865 sim96_LIN alignment 8498:33673 8541:33716 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8498:33673 8541:33716 0.750 +:+ .:. ## cumulative nmp: 0.750 X87344:AF100956+AF027865 sim96_LIN alignment 8502:33675 8541:33714 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8502:33675 8541:33714 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 8518:33675 8541:33698 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8518:33675 8541:33698 0.960 +:+ .:. ## cumulative nmp: 0.960 X87344:AF100956+AF027865 sim96_LIN alignment 1375:7484 1426:7535 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1375:7484 1426:7535 0.710 +:+ .:. ## cumulative nmp: 0.710 X87344:AF100956+AF027865 sim96_LIN alignment 2:22949 39:22986 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 2:22949 39:22986 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 2:22940 41:22979 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 2:22940 41:22979 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 2:22927 41:22966 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 2:22927 41:22966 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 1:22930 38:22967 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22930 38:22967 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 13604:26933 13663:26993 218.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13604:26933 13633:26962 0.700 +:+ .:. ## cumulative nmp: 0.350 X87344:AF100956+AF027865 sim96_LIN fragment 13634:26964 13663:26993 0.770 +:+ .:. ## cumulative nmp: 0.735 X87344:AF100956+AF027865 sim96_LIN alignment 1553:1969 1621:2037 216.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1553:1969 1576:1992 0.710 +:+ .:. ## cumulative nmp: 0.247 X87344:AF100956+AF027865 sim96_LIN fragment 1578:1993 1596:2011 0.840 +:+ .:. ## cumulative nmp: 0.478 X87344:AF100956+AF027865 sim96_LIN fragment 1597:2013 1621:2037 0.720 +:+ .:. ## cumulative nmp: 0.739 X87344:AF100956+AF027865 sim96_LIN alignment 20873:22422 20972:22517 212.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 20873:22422 20909:22458 0.680 +:+ .:. ## cumulative nmp: 0.257 X87344:AF100956+AF027865 sim96_LIN fragment 20911:22459 20936:22484 0.620 +:+ .:. ## cumulative nmp: 0.421 X87344:AF100956+AF027865 sim96_LIN fragment 20940:22485 20972:22517 0.730 +:+ .:. ## cumulative nmp: 0.667 X87344:AF100956+AF027865 sim96_LIN alignment 8485:33676 8541:33732 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8485:33676 8541:33732 0.680 +:+ .:. ## cumulative nmp: 0.680 X87344:AF100956+AF027865 sim96_LIN alignment 28187:33557 28228:33613 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 28187:33557 28205:33575 0.840 +:+ .:. ## cumulative nmp: 0.326 X87344:AF100956+AF027865 sim96_LIN fragment 28206:33591 28228:33613 0.870 +:+ .:. ## cumulative nmp: 0.734 X87344:AF100956+AF027865 sim96_LIN alignment 13146:12883 13194:12931 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:12883 13194:12931 0.710 +:+ .:. ## cumulative nmp: 0.710 X87344:AF100956+AF027865 sim96_LIN alignment 13147:13054 13189:13096 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13147:13054 13189:13096 0.740 +:+ .:. ## cumulative nmp: 0.740 X87344:AF100956+AF027865 sim96_LIN alignment 13147:28659 13189:28701 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13147:28659 13189:28701 0.740 +:+ .:. ## cumulative nmp: 0.740 X87344:AF100956+AF027865 sim96_LIN alignment 13146:28664 13184:28702 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:28664 13184:28702 0.770 +:+ .:. ## cumulative nmp: 0.770 X87344:AF100956+AF027865 sim96_LIN alignment 10634:22920 10692:22978 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10634:22920 10692:22978 0.680 +:+ .:. ## cumulative nmp: 0.680 X87344:AF100956+AF027865 sim96_LIN alignment 8499:33676 8541:33718 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8499:33676 8541:33718 0.740 +:+ .:. ## cumulative nmp: 0.740 X87344:AF100956+AF027865 sim96_LIN alignment 3225:22917 3251:22943 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3225:22917 3251:22943 0.890 +:+ .:. ## cumulative nmp: 0.890 X87344:AF100956+AF027865 sim96_LIN alignment 3218:22909 3250:22941 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3218:22909 3250:22941 0.820 +:+ .:. ## cumulative nmp: 0.820 X87344:AF100956+AF027865 sim96_LIN alignment 3213:26907 3249:26943 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3213:26907 3249:26943 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 1546:22946 1576:22976 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1546:22946 1576:22976 0.840 +:+ .:. ## cumulative nmp: 0.840 X87344:AF100956+AF027865 sim96_LIN alignment 1:22938 41:22978 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22938 41:22978 0.760 +:+ .:. ## cumulative nmp: 0.760 X87344:AF100956+AF027865 sim96_LIN alignment 1:22932 41:22972 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22932 41:22972 0.760 +:+ .:. ## cumulative nmp: 0.760 X87344:AF100956+AF027865 sim96_LIN alignment 1:22920 41:22960 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22920 41:22960 0.760 +:+ .:. ## cumulative nmp: 0.760 X87344:AF100956+AF027865 sim96_LIN alignment 1:22949 37:22985 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22949 37:22985 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 1:22927 37:22963 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22927 37:22963 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 1:22953 33:22985 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22953 33:22985 0.820 +:+ .:. ## cumulative nmp: 0.820 X87344:AF100956+AF027865 sim96_LIN alignment 8418:33675 8541:33742 208.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8418:33675 8449:33706 0.810 +:+ .:. ## cumulative nmp: 0.270 X87344:AF100956+AF027865 sim96_LIN fragment 8506:33707 8541:33742 0.750 +:+ .:. ## cumulative nmp: 0.551 X87344:AF100956+AF027865 sim96_LIN alignment 8426:33675 8541:33734 208.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8426:33675 8449:33698 0.920 +:+ .:. ## cumulative nmp: 0.251 X87344:AF100956+AF027865 sim96_LIN fragment 8506:33699 8541:33734 0.750 +:+ .:. ## cumulative nmp: 0.558 gff2aplot-2.0.orig/examples/mhcregion/hs-mm.sim0000664000000000000000000006167107667662612021517 0ustar rootroot00000000000000#:lav d { "sim96_LIN h.fasta m.fasta M = 10, I = -10, V = -10, O = 60, E = 2" } s { "h.fasta" 1 32000 "m.fasta" 1 35000 } h { ">X87344" ">AF100956+AF027865" } a { s 18340 b 863 804 e 19762 20115 l 863 804 890 831 79 l 892 832 1055 995 85 l 1057 996 1072 1011 81 l 1073 1019 1089 1035 65 l 1095 1036 1137 1078 60 l 1141 1079 1169 1107 62 l 1224 1108 1254 1138 71 l 1272 1139 1292 1159 71 l 1293 1164 1316 1187 71 l 1317 1193 1322 1198 83 l 1414 1199 1435 1220 59 l 1506 1221 1533 1248 57 l 1696 1249 1773 1326 68 l 1774 1330 1803 1359 67 l 1804 1364 1830 1390 70 l 1831 1456 1845 1470 67 l 1846 1623 1916 1693 79 l 1917 1695 2088 1866 83 l 2089 1868 2108 1887 75 l 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X87344:AF100956+AF027865 sim96_LIN fragment 19046:3724 19081:3759 0.670 +:+ .:. ## cumulative nmp: 0.395 X87344:AF100956+AF027865 sim96_LIN fragment 19083:3760 19107:3784 0.880 +:+ .:. ## cumulative nmp: 0.756 X87344:AF100956+AF027865 sim96_LIN alignment 8422:33675 8541:33738 248.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8422:33675 8449:33702 0.930 +:+ .:. ## cumulative nmp: 0.283 X87344:AF100956+AF027865 sim96_LIN fragment 8506:33703 8541:33738 0.750 +:+ .:. ## cumulative nmp: 0.577 X87344:AF100956+AF027865 sim96_LIN alignment 8424:33675 8541:33736 248.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8424:33675 8449:33700 0.960 +:+ .:. ## cumulative nmp: 0.277 X87344:AF100956+AF027865 sim96_LIN fragment 8506:33701 8541:33736 0.750 +:+ .:. ## cumulative nmp: 0.577 X87344:AF100956+AF027865 sim96_LIN alignment 10848:26928 10917:27004 246.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10848:26928 10876:26956 0.790 +:+ .:. ## cumulative nmp: 0.314 X87344:AF100956+AF027865 sim96_LIN fragment 10877:26964 10917:27004 0.680 +:+ .:. ## cumulative nmp: 0.696 X87344:AF100956+AF027865 sim96_LIN alignment 10639:26917 10729:26993 242.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10639:26917 10679:26957 0.730 +:+ .:. ## cumulative nmp: 0.356 X87344:AF100956+AF027865 sim96_LIN fragment 10694:26958 10729:26993 0.690 +:+ .:. ## cumulative nmp: 0.652 X87344:AF100956+AF027865 sim96_LIN alignment 13143:13194 13208:13259 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13143:13194 13208:13259 0.680 +:+ .:. ## cumulative nmp: 0.680 X87344:AF100956+AF027865 sim96_LIN alignment 13982:26951 14035:27004 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13982:26951 14035:27004 0.720 +:+ .:. ## cumulative nmp: 0.720 X87344:AF100956+AF027865 sim96_LIN alignment 8504:33673 8541:33710 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8504:33673 8541:33710 0.820 +:+ .:. ## cumulative nmp: 0.820 X87344:AF100956+AF027865 sim96_LIN alignment 8508:33675 8541:33708 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8508:33675 8541:33708 0.850 +:+ .:. ## cumulative nmp: 0.850 X87344:AF100956+AF027865 sim96_LIN alignment 8510:33675 8541:33706 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8510:33675 8541:33706 0.880 +:+ .:. ## cumulative nmp: 0.880 X87344:AF100956+AF027865 sim96_LIN alignment 8419:33674 8448:33703 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8419:33674 8448:33703 0.900 +:+ .:. ## cumulative nmp: 0.900 X87344:AF100956+AF027865 sim96_LIN alignment 3488:8955 3537:9004 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3488:8955 3537:9004 0.740 +:+ .:. ## cumulative nmp: 0.740 X87344:AF100956+AF027865 sim96_LIN alignment 2:26921 61:26980 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 2:26921 61:26980 0.700 +:+ .:. ## cumulative nmp: 0.700 X87344:AF100956+AF027865 sim96_LIN alignment 20521:22071 20665:22164 238.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 20521:22071 20556:22106 0.810 +:+ .:. ## cumulative nmp: 0.245 X87344:AF100956+AF027865 sim96_LIN fragment 20593:22107 20621:22135 0.620 +:+ .:. ## cumulative nmp: 0.396 X87344:AF100956+AF027865 sim96_LIN fragment 20637:22136 20665:22164 0.790 +:+ .:. ## cumulative nmp: 0.589 X87344:AF100956+AF027865 sim96_LIN alignment 13138:13384 13202:13447 238.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13138:13384 13185:13431 0.730 +:+ .:. ## cumulative nmp: 0.548 X87344:AF100956+AF027865 sim96_LIN fragment 13187:13432 13202:13447 0.750 +:+ .:. ## cumulative nmp: 0.735 X87344:AF100956+AF027865 sim96_LIN alignment 22:7484 61:7525 236.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 22:7484 36:7498 0.870 +:+ .:. ## cumulative nmp: 0.318 X87344:AF100956+AF027865 sim96_LIN fragment 37:7501 61:7525 0.880 +:+ .:. ## cumulative nmp: 0.855 X87344:AF100956+AF027865 sim96_LIN alignment 1:22942 39:22980 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22942 39:22980 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 21191:26946 21247:27002 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 21191:26946 21247:27002 0.700 +:+ .:. ## cumulative nmp: 0.700 X87344:AF100956+AF027865 sim96_LIN alignment 20124:20375 20164:20415 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 20124:20375 20164:20415 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 13146:13368 13198:13420 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:13368 13198:13420 0.720 +:+ .:. ## cumulative nmp: 0.720 X87344:AF100956+AF027865 sim96_LIN alignment 13146:13129 13198:13181 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:13129 13198:13181 0.720 +:+ .:. ## cumulative nmp: 0.720 X87344:AF100956+AF027865 sim96_LIN alignment 13146:12859 13190:12903 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:12859 13190:12903 0.760 +:+ .:. ## cumulative nmp: 0.760 X87344:AF100956+AF027865 sim96_LIN alignment 8505:33676 8541:33712 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8505:33676 8541:33712 0.810 +:+ .:. ## cumulative nmp: 0.810 X87344:AF100956+AF027865 sim96_LIN alignment 3:22919 41:22957 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3:22919 41:22957 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 1542:26928 1621:27033 228.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1542:26928 1575:26961 0.760 +:+ .:. ## cumulative nmp: 0.278 X87344:AF100956+AF027865 sim96_LIN fragment 1576:26978 1590:26992 0.670 +:+ .:. ## cumulative nmp: 0.386 X87344:AF100956+AF027865 sim96_LIN fragment 1591:27003 1621:27033 0.770 +:+ .:. ## cumulative nmp: 0.643 X87344:AF100956+AF027865 sim96_LIN alignment 3225:26925 3279:26993 222.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3225:26925 3250:26950 0.880 +:+ .:. ## cumulative nmp: 0.369 X87344:AF100956+AF027865 sim96_LIN fragment 3251:26963 3257:26969 1.000 +:+ .:. ## cumulative nmp: 0.482 X87344:AF100956+AF027865 sim96_LIN fragment 3258:26972 3279:26993 0.730 +:+ .:. ## cumulative nmp: 0.741 X87344:AF100956+AF027865 sim96_LIN alignment 8484:33673 8541:33730 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8484:33673 8541:33730 0.690 +:+ .:. ## cumulative nmp: 0.690 X87344:AF100956+AF027865 sim96_LIN alignment 8488:33675 8541:33728 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8488:33675 8541:33728 0.700 +:+ .:. ## cumulative nmp: 0.700 X87344:AF100956+AF027865 sim96_LIN alignment 8490:33675 8541:33726 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8490:33675 8541:33726 0.710 +:+ .:. ## cumulative nmp: 0.710 X87344:AF100956+AF027865 sim96_LIN alignment 8492:33675 8541:33724 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8492:33675 8541:33724 0.720 +:+ .:. ## cumulative nmp: 0.720 X87344:AF100956+AF027865 sim96_LIN alignment 13146:13049 13211:13114 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:13049 13211:13114 0.670 +:+ .:. ## cumulative nmp: 0.670 X87344:AF100956+AF027865 sim96_LIN alignment 13147:13176 13190:13219 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13147:13176 13190:13219 0.750 +:+ .:. ## cumulative nmp: 0.750 X87344:AF100956+AF027865 sim96_LIN alignment 13146:12987 13189:13030 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:12987 13189:13030 0.750 +:+ .:. ## cumulative nmp: 0.750 X87344:AF100956+AF027865 sim96_LIN alignment 21188:1978 21314:2121 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 21188:1978 21203:1993 0.750 +:+ .:. ## cumulative nmp: 0.089 X87344:AF100956+AF027865 sim96_LIN fragment 21207:1994 21224:2011 0.830 +:+ .:. ## cumulative nmp: 0.200 X87344:AF100956+AF027865 sim96_LIN fragment 21225:2013 21249:2037 0.720 +:+ .:. ## cumulative nmp: 0.333 X87344:AF100956+AF027865 sim96_LIN fragment 21250:2058 21285:2093 0.640 +:+ .:. ## cumulative nmp: 0.504 X87344:AF100956+AF027865 sim96_LIN fragment 21287:2094 21314:2121 0.680 +:+ .:. ## cumulative nmp: 0.645 X87344:AF100956+AF027865 sim96_LIN alignment 21212:7539 21313:7630 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 21212:7539 21252:7579 0.710 +:+ .:. ## cumulative nmp: 0.300 X87344:AF100956+AF027865 sim96_LIN fragment 21260:7580 21280:7600 0.670 +:+ .:. ## cumulative nmp: 0.445 X87344:AF100956+AF027865 sim96_LIN fragment 21284:7601 21313:7630 0.700 +:+ .:. ## cumulative nmp: 0.662 X87344:AF100956+AF027865 sim96_LIN alignment 13146:28666 13183:28703 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:28666 13183:28703 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 13137:28653 13184:28700 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13137:28653 13184:28700 0.730 +:+ .:. ## cumulative nmp: 0.730 X87344:AF100956+AF027865 sim96_LIN alignment 10647:22928 10698:22979 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10647:22928 10698:22979 0.710 +:+ .:. ## cumulative nmp: 0.710 X87344:AF100956+AF027865 sim96_LIN alignment 10634:22934 10683:22983 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10634:22934 10683:22983 0.720 +:+ .:. ## cumulative nmp: 0.720 X87344:AF100956+AF027865 sim96_LIN alignment 10645:26927 10678:26960 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10645:26927 10678:26960 0.820 +:+ .:. ## cumulative nmp: 0.820 X87344:AF100956+AF027865 sim96_LIN alignment 10636:26922 10673:26959 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10636:26922 10673:26959 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 9929:30500 10040:30611 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 9929:30500 10040:30611 0.600 +:+ .:. ## cumulative nmp: 0.600 X87344:AF100956+AF027865 sim96_LIN alignment 8494:33675 8541:33722 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8494:33675 8541:33722 0.730 +:+ .:. ## cumulative nmp: 0.730 X87344:AF100956+AF027865 sim96_LIN alignment 8498:33673 8541:33716 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8498:33673 8541:33716 0.750 +:+ .:. ## cumulative nmp: 0.750 X87344:AF100956+AF027865 sim96_LIN alignment 8502:33675 8541:33714 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8502:33675 8541:33714 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 8518:33675 8541:33698 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8518:33675 8541:33698 0.960 +:+ .:. ## cumulative nmp: 0.960 X87344:AF100956+AF027865 sim96_LIN alignment 1375:7484 1426:7535 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1375:7484 1426:7535 0.710 +:+ .:. ## cumulative nmp: 0.710 X87344:AF100956+AF027865 sim96_LIN alignment 2:22949 39:22986 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 2:22949 39:22986 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 2:22940 41:22979 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 2:22940 41:22979 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 2:22927 41:22966 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 2:22927 41:22966 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 1:22930 38:22967 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22930 38:22967 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 13604:26933 13663:26993 218.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13604:26933 13633:26962 0.700 +:+ .:. ## cumulative nmp: 0.350 X87344:AF100956+AF027865 sim96_LIN fragment 13634:26964 13663:26993 0.770 +:+ .:. ## cumulative nmp: 0.735 X87344:AF100956+AF027865 sim96_LIN alignment 1553:1969 1621:2037 216.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1553:1969 1576:1992 0.710 +:+ .:. ## cumulative nmp: 0.247 X87344:AF100956+AF027865 sim96_LIN fragment 1578:1993 1596:2011 0.840 +:+ .:. ## cumulative nmp: 0.478 X87344:AF100956+AF027865 sim96_LIN fragment 1597:2013 1621:2037 0.720 +:+ .:. ## cumulative nmp: 0.739 X87344:AF100956+AF027865 sim96_LIN alignment 20873:22422 20972:22517 212.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 20873:22422 20909:22458 0.680 +:+ .:. ## cumulative nmp: 0.257 X87344:AF100956+AF027865 sim96_LIN fragment 20911:22459 20936:22484 0.620 +:+ .:. ## cumulative nmp: 0.421 X87344:AF100956+AF027865 sim96_LIN fragment 20940:22485 20972:22517 0.730 +:+ .:. ## cumulative nmp: 0.667 X87344:AF100956+AF027865 sim96_LIN alignment 8485:33676 8541:33732 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8485:33676 8541:33732 0.680 +:+ .:. ## cumulative nmp: 0.680 X87344:AF100956+AF027865 sim96_LIN alignment 28187:33557 28228:33613 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 28187:33557 28205:33575 0.840 +:+ .:. ## cumulative nmp: 0.326 X87344:AF100956+AF027865 sim96_LIN fragment 28206:33591 28228:33613 0.870 +:+ .:. ## cumulative nmp: 0.734 X87344:AF100956+AF027865 sim96_LIN alignment 13146:12883 13194:12931 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:12883 13194:12931 0.710 +:+ .:. ## cumulative nmp: 0.710 X87344:AF100956+AF027865 sim96_LIN alignment 13147:13054 13189:13096 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13147:13054 13189:13096 0.740 +:+ .:. ## cumulative nmp: 0.740 X87344:AF100956+AF027865 sim96_LIN alignment 13147:28659 13189:28701 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13147:28659 13189:28701 0.740 +:+ .:. ## cumulative nmp: 0.740 X87344:AF100956+AF027865 sim96_LIN alignment 13146:28664 13184:28702 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:28664 13184:28702 0.770 +:+ .:. ## cumulative nmp: 0.770 X87344:AF100956+AF027865 sim96_LIN alignment 10634:22920 10692:22978 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10634:22920 10692:22978 0.680 +:+ .:. ## cumulative nmp: 0.680 X87344:AF100956+AF027865 sim96_LIN alignment 8499:33676 8541:33718 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8499:33676 8541:33718 0.740 +:+ .:. ## cumulative nmp: 0.740 X87344:AF100956+AF027865 sim96_LIN alignment 3225:22917 3251:22943 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3225:22917 3251:22943 0.890 +:+ .:. ## cumulative nmp: 0.890 X87344:AF100956+AF027865 sim96_LIN alignment 3218:22909 3250:22941 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3218:22909 3250:22941 0.820 +:+ .:. ## cumulative nmp: 0.820 X87344:AF100956+AF027865 sim96_LIN alignment 3213:26907 3249:26943 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3213:26907 3249:26943 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 1546:22946 1576:22976 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1546:22946 1576:22976 0.840 +:+ .:. ## cumulative nmp: 0.840 X87344:AF100956+AF027865 sim96_LIN alignment 1:22938 41:22978 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22938 41:22978 0.760 +:+ .:. ## cumulative nmp: 0.760 X87344:AF100956+AF027865 sim96_LIN alignment 1:22932 41:22972 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22932 41:22972 0.760 +:+ .:. ## cumulative nmp: 0.760 X87344:AF100956+AF027865 sim96_LIN alignment 1:22920 41:22960 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22920 41:22960 0.760 +:+ .:. ## cumulative nmp: 0.760 X87344:AF100956+AF027865 sim96_LIN alignment 1:22949 37:22985 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22949 37:22985 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 1:22927 37:22963 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22927 37:22963 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 1:22953 33:22985 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22953 33:22985 0.820 +:+ .:. ## cumulative nmp: 0.820 X87344:AF100956+AF027865 sim96_LIN alignment 8418:33675 8541:33742 208.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8418:33675 8449:33706 0.810 +:+ .:. ## cumulative nmp: 0.270 X87344:AF100956+AF027865 sim96_LIN fragment 8506:33707 8541:33742 0.750 +:+ .:. ## cumulative nmp: 0.551 X87344:AF100956+AF027865 sim96_LIN alignment 8426:33675 8541:33734 208.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8426:33675 8449:33698 0.920 +:+ .:. ## cumulative nmp: 0.251 X87344:AF100956+AF027865 sim96_LIN fragment 8506:33699 8541:33734 0.750 +:+ .:. ## cumulative nmp: 0.558 gff2aplot-2.0.orig/examples/mhcregion/mm.gff0000664000000000000000000000443707667662612021056 0ustar rootroot00000000000000##gff genbank AF100956+AF027865 genbank Terminal 856 983 0.500000 - 2 H2lmp2:6 AF100956+AF027865 genbank Internal 1721 1862 0.500000 - 2 H2lmp2:5 AF100956+AF027865 genbank Internal 2247 2376 0.500000 - 0 H2lmp2:4 AF100956+AF027865 genbank Internal 2914 3045 0.500000 - 1 H2lmp2:3 AF100956+AF027865 genbank Internal 4362 4429 0.500000 - 0 H2lmp2:2 AF100956+AF027865 genbank First 5882 5941 0.500000 - 0 H2lmp2:1 AF100956+AF027865 genbank First 6512 7037 0.500000 + 0 H2tap1:1 AF100956+AF027865 genbank Internal 7815 7929 0.500000 + 2 H2tap1:2 AF100956+AF027865 genbank Internal 8067 8197 0.500000 + 2 H2tap1:3 AF100956+AF027865 genbank Internal 9200 9405 0.500000 + 1 H2tap1:4 AF100956+AF027865 genbank Internal 9966 10163 0.500000 + 1 H2tap1:5 AF100956+AF027865 genbank Internal 11474 11602 0.500000 + 0 H2tap1:6 AF100956+AF027865 genbank Internal 11765 11953 0.500000 + 0 H2tap1:7 AF100956+AF027865 genbank Internal 12125 12298 0.500000 + 0 H2tap1:8 AF100956+AF027865 genbank Internal 12521 12683 0.500000 + 0 H2tap1:9 AF100956+AF027865 genbank Internal 13484 13620 0.500000 + 2 H2tap1:10 AF100956+AF027865 genbank Terminal 15208 15414 0.500000 + 1 H2tap1:11 AF100956+AF027865 genbank First 17038 17184 0.500000 + 0 H2-lmp7:1 AF100956+AF027865 genbank Internal 17872 18019 0.500000 + 0 H2-lmp7:2 AF100956+AF027865 genbank Internal 18210 18321 0.500000 + 2 H2-lmp7:3 AF100956+AF027865 genbank Internal 18774 18903 0.500000 + 2 H2-lmp7:4 AF100956+AF027865 genbank Internal 19344 19548 0.500000 + 2 H2-lmp7:5 AF100956+AF027865 genbank Terminal 19811 19899 0.500000 + 2 H2-lmp7:6 AF100956+AF027865 genbank First 23928 24417 0.500000 + 1 H2tap2:1 AF100956+AF027865 genbank Internal 24503 24617 0.500000 + 2 H2tap2:2 AF100956+AF027865 genbank Internal 27387 27517 0.500000 + 2 H2tap2:3 AF100956+AF027865 genbank Internal 27723 27928 0.500000 + 1 H2tap2:4 AF100956+AF027865 genbank Internal 30503 30700 0.500000 + 1 H2tap2:5 AF100956+AF027865 genbank Internal 30863 30991 0.500000 + 0 H2tap2:6 AF100956+AF027865 genbank Internal 32648 32836 0.500000 + 0 H2tap2:7 AF100956+AF027865 genbank Internal 32956 33129 0.500000 + 0 H2tap2:8 AF100956+AF027865 genbank Internal 33279 33438 0.500000 + 0 H2tap2:9 AF100956+AF027865 genbank Internal 33967 34103 0.500000 + 2 H2tap2:10 AF100956+AF027865 genbank Terminal 34547 34726 0.500000 + 1 H2tap2:11 gff2aplot-2.0.orig/examples/mhcregion/mm.fa0000664000000000000000000010542307667662612020677 0ustar rootroot00000000000000>AF100956+AF027865 TGAACTTGGAACTCATTGATTTTGTTGGTCAATGTGTTCCACGGGTCTGTGTTTCTGCCT CCCCAGTACTGAAGTTCTAGGTAGGTGTCACTGTACCTGGTTTTTAAGTAAGTGCTGGCA ATCTGGTCCCAAATTTTTGTGCACAGCTAGCCCTTTATTGACTGAGCCATCTCCTCAGCA CAGGATCTACAATATTACAACCCATCCAGGGGCAGGAGAGATGGCTCAGTGGTTAAGCAC CTGGCTGTTCTTGCAGAGGGCCCGGGTTCAGTTCCCAGCACCCACATGGCAGCTTGCAAG CAGACTCCAGTTCCAGTTTCCAGTGTCCTTCTTCTGGCCTCTACAGGGACCTGCACACAT CCATGCAGGAAGAAAAAAAAAACCACATACAATGAAAGTAAACAAATCTATAAAATTAAA AAGAAGTCAACCCACAGTGACCTCTCATATCTGAGGGCTTTTCTCCCAGGGTGCTCCGCT CTCTTTCTCTGGAGAAAGTGTTTGGCATGGGGATAAAGAACAAGAAGGTCTTCAATTTAA TGTCGAACTTCACAGATTCCATTTTAAATCTCAGTTCTTACTGTCTAGAAGTTCACTGAG TCTCGCAGACTTTGAATGTGGTTCCCTTTGTGTGGATGCTTTTTTATTTATTTGCAACTA ATGATTTATTTATTTTTTTAATAATAAAGTTTATTTTTACAAAAGAATGGAAGGGCATGC TGATCTGGGCCGGGGAGGACGCTTCCCTCCACACACCGTGTCTCTCTGATACACATATTT CACCTTTGCCCATCGCACCGGCCTTCTGGTTCCAGAAAGTTTATTACAAACAAGGAAGGG ACTTCTGGGGATCAGTCACTCATCGTAGAATTTTGGCAGCTCATCTCCCAGGATGACTCG ATGGTCCACACCAGCAGCTGTGATGGTGACCAGGTAGATGACACCCCCACTAGAGCCATC TCGGTTCATGGCCAGAGTGATGGCTGTAGAGGATTCACGTTGGAAAGAGGAGCAAAAAAA AAAAAAAATGACTTAAATACTCGTTTCCTTCCCTTTCCAACTACATGCTACTTCCCCCCA GAACACATCACAACGTCCAGCAAACCAGCACCTGCCCATATCCCTACTGTAAACGTTCAA GTTACCTATAGGCTAGCACACATTGTCCAAATCCTTGACTGCTGAGCCATCAAGTTCGTG TGAGCTAGCTGGGGGCGGGGGTTGGTGGGTGGAGGGGAGAGCTCAATTCACTGCTGGTTC CCATAGTGACCTCATACCCTTACGTGATTTGCTTAAGACAGTCCTGCTCCATCCCTACTG CCCCCCCTCAGCCCCATCTCTTTTACCATTTGTCTTGTCTATCCCCTCCCACTCTCAAAT GTCTCCCAGTTCCAAAAGATGGAGATGGAGAGGCTCAGTGGTTAAGAGCACCTATTACTT TTACAGAGTTTGGTTCCCAGCACCCACATAGGGTGCCTTACAAACACCTGTAACTCCAGC TCCAGAGGACCCAGCATCCTCTTCTGGCTTCCACATACACAGGCACAAACCCACACAGAG ACACACTCATGTACACATGCATAATTAAAAGTAAATATTTCTTTTTAAAAGCTTCGACAC GGAATGGCCACCCTTGTATTTCTTTTCTTATTCTTTACAATCTACTTTCTTTCCACGTCC ACAAACCCTCCCCCATGTCACCTCTCAGTTGGCTAGTTACCATCTGTGGTGAAACGCCGG CACTCCTCAGGGGTCATGCCTGGCTTATAAGCTGCGTCCACATAACCATAAATGTAGGAG CTTCCGGAACCGCCGATGGTAAAGGGCTGTCGAATTAGCATCCCTCCCATGGTTCCATAT ACCTAGAGAGAGGGTCCCTCAGGTCAGGTCAGGATCATCCCAGGGCTCCTTCATGTTAGA TGAGCTTTGTGAAGACCTGGGAGGCCCACACTTGAGCCTACAGTATGCTTTTATCATTTA TTTTTGCTTGTTTTGAAACAGGGTTTCACTAATGTAGCCCTGGCTTGCCTGGAACTCTCT CTAGAGAGCAGGTTCTTCATACCCACAGAGATCCACATGCCCCTGCCTCCCGAGTGCCGA GACTGAAGATGTGTACCACCGTAATCGGGGCTGTAGGATGTCTTTAGAGGAACTGTCTCT GGACCACAAAGCTAGAAAGACATGCAACTTTCATCTCTCTGAAGAGAGGGGTGGGGAACC CTGAGACCTGGAATGGACACACTCACCTGTCCCCCCTCACATTGGTCCCAGCCAGCTACT ATGAGATGCGCTAACAAGTCCTCACGGTACTTGTAGGAGATGTTCTTCACCACGTTTGCA GCAGCCAGAACGAGGGGCGGCTCCTCCAGCTCCAACCTGAAGCGGATGTCGGGAAGGAGG GTCAACAGCACTCTGCTGAGTCTCACTCTTGTTAGCCCATTGCCCTCTCTGCCAAGTCAC GCTTGAACCAGCGGCTGCACAGATACCAGCTTCCCTCCCATGTGCCTAGGGGGGCCAGAG CTCCACAATGGAGGTCCTCGGCTCTTCACCTGCTTTTCTCTGCTCCACCTTCCCACTCCC AATGATAAACCCCTCCCTTGCCTCTAAGGGCCCTGCCCTCGTCGGTTAAAGCAGATGATA AGCTTGCTTCCGTCCCAGTGACCTTGATTTCTCCTGGCAACTGCCTGATATTAGGAGTGG GCCAAATGGCTGTCTTCTTCCTGAGTTCCTACATCAGGGCAGTGATGTGCACTTTTCAAG TCAGCACAGGGGAGGTGGAGTCACTACCGTGATTTCCTCTTCACAGACGCAGAACACTGG CTCCCAGACACTCCAGTGGGAGCTCAAAGCTGGCAGAGCCACGCAGTTGGGGAGTTTTAG CGGGAGGGGAGTCAGGACCCCAGGGCTTTGTACCCGTGTAGCTCCAGCTGGTAGGCGGCC ATGTCAGCTATGGCTTGGGCATCAGCAGCGGAACCTGAGAGGGCACAGAAGATGTGCTGG TGCAGAGGGGAGAGCTTGTCGAACACGCGGTTCACCACTGCTGTTCTGTAAGGAAGAACC AAACGTTCAAGTTGGTTTAAAAAGATAATTGTAGAGCTTGCAATGCTTAGGTTAAAGCAG GAAAAAAAAAAAAGACATCTCAGATCAGTAAGTCACTGTAGTAATCAAAGTTAGATGTGC TTGGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCGAGGGGAGGTGTAGCCCAG GTGGTAGAGTACCTACCTGGCACGCACAAAGCCCAGCATAGCATGAGGTGGGCATGGCGG CCATACTTGTACTCCTAGCACTCAGAAGGTAGAGTCAGGAGGAACAGGAGTTCAAGGCCA GCCTTGACTACATAGCAAGTTTGAGGTCAACCTGGGCTACAGGAGAGATCCTATTTTAGA GACTATACTCACAAAACACTAGACTTTTAAAAATAGATTTGTTTATCTTTATTTCATGTC CATTGGTGTTTTGACTGCATGTTTGCCTGTGTGAGGGTGTCAGCTCCCCTGGAACTGGAG TTACAGACAGTTGTGAGCTGCCATGTGGGTGCTGGAAATTGAACCCCGGGTGGTAAGGAA GAGCAGTGCTCTTAACCACTGAGCCATCTCTCCAGACCCAAAATATTAGACTTTTAAAGA CTTATTTTTTTTTTTTATAACAAAACAACAAAAGAACACCTAGGCAAGAAAAGTGTGCTT CTATGGCAGGCAGTGGTGGCTCACGCTTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGC GGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTA CACAGAGAAACCCTGTCTCTAAAAACAAAAAGTGAAACAAGAGAAAAAAATTGCCTCTTT CCAGAATTTCCTTGCAGTTCATCACTTTGAGGGGCAACGGTGGTTCTATGGAACATGGCA GAAACAGCATGGATGTCATCCCAGTCTGACTTGTGTGTGAGCAAACTAGCCAGGACGGGA GACCAATCAAACTTACTTCAAACTCAGGCAAATGAGTGAGATAACTGCTTCAGAAAACCA CCATTTATCTTTTATCCTAACTGCAGATAACACAGTCCATCTACAACCTACCCGTGTCCC TCCGAGATACTATTTCTTTATGTCCATCAAGCTACAAAATATTCATGAATGCCATGGATT CAGAGGCCCAGACGCCTCTCCATCAATGCATTATGATACTTTTTTGGAAAGATCAGCTTC ATTTCTTGGAAGGTTATCATACTCCTCAGAAGTGGGCAAGAAAAATGTGCACTTAGGGCC ACCAGCTTCCCTCCAACACACGGGCCTTTGACACTACTCACCCCGCTGACACCCGGGAAT CAGAGCCCACCACGACACCCCCGTCAAACTCCACTGCCATGATGGTTGTCTGCAGAGAGA CAGTACGAAAAGTCAGAGCTAGGAGCGTCTTGAGCCTCCATCTTAAGGAGGAGAAAATGT CCATGCAGGAGGTGACCGACTCAAGGTCACCCTGAAAAGCAAGGATGGTTCCTGGAGGCA GACACAATCTGCATGAGGAGAGCAAGAACTGAGAGGAAGGCCCAGGAAACCGGCCCCGCT GCTTGTGAATTGCGTACCACATGCATCATTACTGTGAATTACTGTGACACAAGACCAGGT CTTTCCTGGTCCTGGATCCCCCACCTGCAACCTTACTTTATCAGAAGGGGAGCCTTAGTG TTACTGAACAAGGGACACAGAGAGGCCGGGGGTTAACATGGCCAGGAGTCGAGACACAGA AGCAGCAAGGATCCTTCAGGTAGGGCACAAATTTCACTTAAGCGAAGTCTCTGCAGCCAG GGGAAAGGACTTCTGGATAGCAGAGTTTTTCCAGGTCAAGGAAAGAATTACGGATAAGTG AAGGAGGGTAGACACATCTACTTCCCCCACACCTTCTAGGTTAAAAGGCACCTTAGGAGA CCCTTGGGTGCACTGAGAAAACTGACTTATGGAGACGAATGAGCTTCCCAAGTTGACTCA GGTCTCACTCTGAACCCTTGATTGATTTGATTTCTAAGTCCCACAGCTCCGTGGCAGCGA GGGAGACTTTTTCCAACCTTTCTGTCCACTCCATGTCGTTCTGATCTCCGGGGACCCTGC CCGCGAGTGTGCTTTCTGAGCACAAGTAAAAGGCCAGAAATGTCCACTTTGTTCCTCCAC ACCATGTTAACACTGTGGTTGGTGGCTTTTAGAGAGCAGAAACCAGCTGCCATCTTCCCA GCTCCTAGGTCTGGGCAAAGTTCTCAGGCAAGCATGGGAATGACGGTGTTGGGACAGGGT GGGGTGGAGTGTGCTGCAGGGCAGCACCTGGAACAAGGAGGACCACCGATCATCCCCATC TCCCCCTCAATCCTGGCGCCAGAGAGCTTGTCCTCACTCAGGGTGGGGGCTGTCTGGGGC TAGGTTAAGCAAAGATCTGTATGATGTGTAGGTAGGTCCTTTTCAGTGAGCCTCCATATT ACCTTCTCTCAGGTGCTTCATCCAGGACACCTCAGCACCTCTTTTGCAGGGGTCCCCAAG CCCCTCACTTGATTTAGCCAGTAACCCCAACTGCGCAGTCTAGAGTGAAAGCGAAAGCGC TTTGGAGCAACTTCCCTTAGACGCTTCCAGCTCAAGCCAAAGAACGCACCTTCTCACCAG CTTCGCATGCGGATCCCTCCACAGACCCCTGGACACCACACTTCTGAGCAGGGATACCCT ACGTTCACTGTGGAGCGCAAGCGCTGGGCGCTACAAGCTTCCTAAGTCTCTTGGTTTACT TCCAGAGCTTTAGGGGTCCCTGATCACTCCACCCGCTGACTCTCACCCCGAGACCCATTA CCCCGGTGTGGACTTCTTCCGTCCGGAACGAGCCGGCGGTAGGTGCTCCTGCCCGCAGCA TCTCAGCAGAGCGGGGCTCGGCTTTCCAATCAGCGGCTGCGCGCGGTGCAGGCAACTTGC AGACTGAGGCCCCGCCCCATCATCGCGCAAGGGGCGTGCCGTTCTACCAGCATTTGGCGC CCAGAGCAAACCTGAGCAGGGCAAATCTGCCCAGAGACAGGTGACGACAGAGGGTCCTGC CCTCAATCTGGGGTGGGGCCTGGGATGGGAAAATTCACGCAAGCAAGTTAAGGGGGCTGG GGAAGAAGAGGAGAATGAGATTCATGGAGAAGAACACGACAGGCCAGGGCTGCTAGGCAG AACTCCAACTACAGCTTCAGCGGCAGCTTCCAGAACAGCCTGAGCAAGCCAGTCTCAGAA GGAGGCGTGTCTAGTGATTCGAGGTCGGCTTTCGGTTTCTTCTTCCTCTAAACGCCAGCA CTTCTAGTCAGCTCCACCAGCTCGAGCGGGTTCCCGGGACTTTACGCGCACGCCCTCGGA CCCGCCCTTCTTCCTTCCCCACGGAGACTCCTGTGCAGCGCGGACGTCGAGAGTCCCAGG CTAGGACCAGACTCTGGACAGCTCACGCTCGATGGCTGCGCACGTCTGGCTGGCGGCCGC CCTGCTCCTTCTGGTGGACTGGCTGCTGCTGCGGCCCATGCTCCCGGGAATCTTCTCCCT GTTGGTTCCCGAGGTGCCGCTGCTCCGGGTCTGGGTGGTGGGCCTGAGTCGCTGGGCCAT CCTAGGACTAGGGGTCCGCGGGGTCCTCGGGGTCACCGCAGGAGCCCATGGCTGGCTGGC TGCTTTGCAGCCGCTGGTGGCCGCACTGAGTTTGGCCCTGCCTGGACTTGCCTTGTTCCG AGAGCTGGCCGCCTGGGGAACACTCCGGGAGGGTGACAGCGCTGGATTACTGTACTGGAA CAGTCGTCCAGATGCCTTCGCTATCAGTTATGTGGCAGCATTGCCCGCAGCCGCCCTGTG GCACAAGTTGGGGAGCCTCTGGGCGCCCAGCGGCAACAGGGACGCTGGAGACATGCTGTG TCGGATGCTGGGCTTCCTGGGCCCTAAGAAGAGACGTCTCTACCTGGTTCTGGTTCTCTT GATTCTCTCTTGCCTTGGTAAGGGAGACTGGGTGAAAGAGCAGGCCACAGGGGACAGGGC AATGGGCATTCCAGGCAGAAAGGGAGAGTAAAGTAGTCCCGGGAAGCGTCAGAGACACTA AGGAGGCAACTTAGGCGGAAAGAGAAGGACCCAGGCCCGAGAAGGGGTCCAGACAAGGGC GTTGGGGACAGGGTCTTCTGGGAGCAGAACTTCACATCATAGCCCAAATGTGAAGGTTTC TTTCCACACCGCCATCTTCTCCTCTCCTCTTCTCTCTCCTCTCCTCTCCTCTCCTCTCCT CTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCC CTCCCCTGCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCC CTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCCTTCCCCTCTTTTCTATTCTTTCC TTTTTGAGATAGGGTCTTTCTTTGTAGCTTTGGCTCTTCTGGAATTCATTATGTAGCCCA GGTTGGTCTCAAACCCAGAGAGATCTGCTCGCTTCTACTTGGAGTGCTGGGATTAACAGC CTGTGCCCCCAAGGTCTGCTAACCGCCCTCAAGTAGCCCTTGAGAAGTTTGATGTAGCCG AGCAGGCTTGGGTCTGTGAACAGGCTTGGGTCTGGGAGCTCAGCTTCCTGGATAGTGGTG AAGGGAGAGGGGCAGAAGTTGCGGGTAGTTTGCTCATAATGTTTGTGACTGAGGTGTCTC TCCTCTCTCCCCAGGGGAAATGGCCATTCCCTTCTTCACGGGCCGCATCACTGACTGGAT TCTTCAGGATAAGACAGTTCCTAGCTTCACCCGCAACATATGGCTCATGTCCATTCTCAC CATAGCCAGGTGTGGAGGATGGGAATGGGGGTCCCAGAGCAGAGGGGACTGGCTGTTGGG ACTGTCATTTAAGTTACACTTCTGTGGGGATCTGGGACTCTGTCTCAGGAAGGAGACAAC TGATCCTCCCGTGTCTCTGACTCTAGCACAGCGCTGGAGTTTGCAAGTGATGGAATCTAC AACATCACCATGGGACACATGCACGGCCGTGTGCACAGAGAGGTGTTTCGGGCCGTCCTT CGCCAGGAGACAGGGTTTTTCCTGAAGAACCCAGCAGGTCTCTCATGAAACCTTTTCACT TGTATGCTATAATCTCTATACCGCCACACACGCTCTCGACTGCCCCCCCCCCCCAAACAT GTCCACACACACATGCCCAGGCTGGATCCTCAGAACCATATGGATGGGGTGTGGTAATTC CAACACTTGGGGGATGGAGGCAGGACCTAGAGGTCAAAGTTCAAAGTCTTTCAGCTACAT AGTCAATCTGAGGCTACCCTAGGCTACATGAGATCCTTTCTCTATATCCAAGACTTCCTG TATGTTAGGGAAAAGCTCTAACAACTGAGTGACCCCCAAGCCTTATTCATGGTATATCTC AAATGTAGCAAAACATTGTCTTTTTTACCCTAAGGAAAACTGTATTTGCATTCATTGTTC CCCATATGAAGCAGCAGACTTACAGCCCTGGAAAGCCAGAGACCCTCAACTCCAACGGCC TCATTTTAAATGGAGGAAACTGAATCCTAGACACTAGACGCTGAAACCTACCTAGGCAGA TGCACCGAGGTTAGACCCGAGGGTCTCCATTTCCTAAAGGACCCTGGGCCTGCCTCTCTG GTTGCTTCCTCCCTTCTCTCCACGGCTACTGGAGGGAGGGCCAGCGGCAGGCAACAGACA GGAGTTAAAGTAACTGAAGAGCTGAAAGCTTTCAGGGAACTGGAAGTTCACTTCACATTA CAGGGCATCACTGTGTAGCCTTGGCTGGCCTAGAATTCACTAGGTAGCCCAGAGTGGCCT TTGCTGCCTTTGCCCCCAGTCTGTTGGGATTAAAGGTGTGTGCCACCACACCCAGCGACA ACTCCTTTACTGGCAAGCACAGGCCTAACCAGATCTTTCCTTTCTTTTCCCCCTGCATTG AAGTTCCTGCGCCTCCCCAGTCTCCTACCCGTTACCCGCCTCAGGATGCTGTGCTGACGG GCCCACCCTGGCCCCCACTGTCAGCTCCTCTTGTCTCTGTGAACCGCTTGCTCACTGTCT CTCTTCTCAATCTGGGCAGGTTCCATCACATCTCGGGTGACTGAGGACACAGCCAACGTG TGCGAGTCCATTAGTGGCACGCTGAGCCTGCTGCTGTGGTACCTGGGGCGAGCCCTGTGT CTCTTGGTGTTCATGTTTTGGGGGTCACCGTACCTCACTCTGGTCACCCTGATCAACCTG CCCCTGCTTTTTCTTTTGCCTAAGAAGCTGGGAAAAGTGCATCAGGTACGTCCCCAGATC CTCAGCTCCTACATTTAGTTTCTCCTAGACTGCTTTCAGTGTGGCTTTCCAGTCCTCCAT CATCCTGAACCTCTGACCTGTGACCTCTGACCCCGCACTGCCCTGCACCTGCATCTCTGT ACTCTGCCTTCTTGTCTAACTTCTGGCCACAATCTGTCCTTAAAGAATAGGCTCTCAGGC TGGAGAGACGGCTCGGGGTTAAGAGTGCTGACTGTTCCTCAGAGGACCTGAGTTTGATTC CCAGTGCACACTAAGCAGTTAGTTCTCTGTGGTCTGTAGTTCCAGCTTCAGGGGATCTGA CTCCCTCTTCTGGTCTCCATGGAGATCTATACACATGATGCACACACATACACGATAAAA TAAATCTTACAAAAACTGGATTCATTTCCTCCACGCCCCTTCTACCTAGAAGTATGGCTG TAGACCTTTCTCTTCCCTCTGTCCCTCTGACTCTTGACTCTATAATCTCCACGCAGCTAA CCTAGGTGTCCATATTCTCTCTCATTTGCACCCCGTGTGATGTCTCTGGTCCTTGTCTTC CATAGTCACTGGCAGTGAAGGTGCAGGAGTCTCTAGCAAAGTCCACGCAGGTGGCCCTTG AGGCCTTATCGGCGATGCCTACTGTGCGGAGCTTTGCCAACGAGGAGGGTGAGGCCCAGA AGTTCAGGCAGAAGTTGGAAGAAATGAAGACTCTAAACAAGAAGGAGGCCTTGGCTTACG TGGCTGAAGTCTGGACCACGAGTGTGAGTACAGGAGGTGGATATCCCATCCTTTGTGTGA ACATGTCTTGATTCTGCTGTTTTCCAACCCCCCTGCTCCTCCTCCAGTGGGAAGTGATTG GCTTCGGCTCTTGATTACTCAATTAAGGACTCTGCCCTTAATTCTCTCAGTGTTTTGTAG TGTTAAGAATCAGCCTTCCACATTGGCACACAAAGCCCACTTGACCTGTGTGTTAAGGAG ATACCACTCTCCCAACTCCGGCACTTCCTTGGCTTCTCAGAAAGCCACACATTTCCTGCA CGGTGTGCGCTTCATGTTGGCACTGTGTGGGCAAGCTAGTGGGAGCCACGAGAAGTGCCA GAGGCCAGCGGCCAGGGGCAGCTGGAACTAAAGCTGTAACCGAGATTCCAGGATCCTTCC TGCCACCCACCAGTTCTGTATCCAGCACATGTTACCTTTTTCTGAGGCTGTTGCCCTGAT TTGAAAAATGGGAGTAAAACCTGATGTGGTGGTTCACATCTGTAATCCCAGGACTCATGC TGAGGCAGGAGGATTGCTGTGAGTTTCCAGCCATCATGAGCTATGATGTGAGACTTGTCT CATTAAAGGGTATTGGGGAGTGAGATGACTCAGTAGGTAAAGGTGCCTGCTGTCGTGCTG CTGAGCCTGGTGACCTGAGATCCATCTCAGGAACCCATATGGAGGACAGGAGAACTGACT CCTGAAAGTTGTCCTCTCACCTCCACAAGGTGCACTGTGGTGCCTACTCACATACAAAAA TAAGTAAACAAACAAACAAACAAACAAACAAATGTAGTAAAAAAGTAATATTAAACAGCA GCAAGAAAGGTATAACATAATAACATAATCTCCTATACAGAGGCTCGTGATGTGAGCCGC TGTGTTTAGCTTTGTAATACAGGGTGGACATGGTTCAGCTGTTAAGGATGCAGACTGCTC TTCCAGGTGACAGGCACTTATGAAGGGCAGCTCACAACTGCCTGCGGCTGTAGCTCTAGG GGTTCTGATGCCCTCTTCTGACCTCTGTGGGTGCCTACACTCATATGCCTGTACCCGCAG ACAGACAGACAGACAGACAGACAGACAGACAGACACACAGACATAATTTAGAACTATAAA AATAAATCTTTTTAAAAAGTGTCAAATGCTCCTGAAACAAGGAGCCGGCAGCGATGAGGA GGAGGACATGGAAGATGTGAGCTGTGTTTGAGTCTGACCATTGACCCCGCCTTCCCCCTA ATCTCACGTGTCTGGGAGAAAAGACCTTCCATGTGATCATTGCAGTTCGTTTCATCCCAT GGTTTCCCTGTAGGTCTCGGGAATGCTGCTGAAGGTGGGAATTCTGTACCTGGGCGGGCA GCTGGTGATCAGAGGGGCTGTCAGCAGCGGCAACCTTGTCTCATTCGTTCTCTACCAGCT TCAGTTCACCCAGGCTGTTCAGGTGAGCCCCGCCCCCGCAGTCGGCGGTCTCAGCCTGTC CATTGCCTTCTCTGCCGCTTTGCGCATCCTCCGCCTGTTCCCTGAATGCTGTCAAGCAGG TTAGACGGCTCACTTGCTTTCGTGGTCCATCCCAGGCTCACACACACCCCGCTCTGCAAT GCAGGTCCTGCTCTCCCTCTACCCCTCCATGCAGAAGGCTGTGGGCTCCTCAGAGAAAAT ATTCGAATACTTGGACCGGACTCCTTGCTCTCCACTCAGTGGCTCGTTGGCACCCTCAAA CATGAAAGGCCTTGTGGAGTTCCAAGATGTCTCTTTTGCCTACCCAAACCAGCCCAAAGT CCAGGTGCTTCAGGTACTGTCTACCCATCCCTTTTATGCCTCCTTCTTCTTCTTCTTCTT CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT CCTTCTCCTCCTCTCCCTCCTTCTCCTCCTCCTCCTCCTTGCCACGAGCTTCTCTGGCCT CCAGGGGCTGACGTTCACCCTGCATCCTGGAACGGTGACAGCGTTGGTGGGACCCAATGG ATCAGGGAAGAGCACCGTGGCTGCCCTGCTGCAGAACCTGTACCAGCCCACCGGGGGCCA GCTGCTGCTGGATGGCCAGTGCCTGGTCCAGTATGATCACCATTACCTGCACACTCAGGT GAGCAAGAAGGAGGTGTGGGGGAGGGGAGGAGATCAAGCCAAGAGACAATTCTCCACGAA AACTCTTGCAGAGAGTTAGGGGATGCAGGCAGCCATGGGCAGAGTCGGGGCTGTGGACAG AAGTCACGTGACTGTATGGTATGCACAAGATTGTGAATCTTCAGTCCCTGGACAATAACA CTGGTGTTTCTTGCCTGTGGCTCTTCACATTTGACCTCAGGTGGCCGCAGTGGGACAAGA GCCGCTGCTATTTGGAAGAAGCTTTCGAGAAAATATTGCGTATGGCCTGAACCGGACTCC AACCATGGAGGAAATCACAGCTGTGGCCGTGGAGTCTGGAGCCCACGATTTCATCTCTGG GTTCCCTCAGGGCTATGACACAGGTATCTGCACTCTCCCATCCAGATTCCAACAATCCTG CCTTTATTATTCAATCCCTCTTGTCCCTTGGATGTCAATTTGTAGTTGAAACTCTAAGAT TCACATCCTCAGACTCCATCTGCCTTCATAGGGCCTCCATTTCCACTGCCCCTGTCAGCT GCGCCCATGCCCTTGTGTGTGTGTGTGAGAGAGAGTGTGTATGTGTGTGTATGTGAGTGT GTATGAGAGTGTGTATGTGTGCCCGTGTATGTGAGTGTGTATCATACCCTGAGGGAATGT ATGTGTGTATTTATGTGAGTGTGTATGTGTATGAGAGTGTATACATGTATGCATGTGTAT GTGTGTATGTGAGTCTGTATGTCTATATGTGTTTGTGTGAGTGTGTATGTATGTGTGTCT GTGTATGTGTGTATGTGTGAGTGTGTATGTGTCTGTGTATGTGAGTGTGTATGTGTGTGT ATTTGAGTGAGTCTGTGTGTCTGTGTCTGTGTATATGTGTGTAAGTGTGTGAGTAGGTAT GTGTGCCTATGTGAATGTATGTTTATGTGTGTGTATATGCCTATGTGAGTACGTATGTGT GTGCCTGTGTATGTATGTGTGTATGTATGTGTCTGTGTTATGTGAGTGTGTATGTATGTG TGTATGTATGTATGTGAATATATATATGTGTGCCTGTGTATGTATGTGTGTATGTATGTG AGTATATATATGTGTGTGTGGCTGTGTATGTATATGAGTGTGTATGTGTGCTGTGTATGT GTACACAACTATCTACATCTCAGCTGGACTCTTGTCTCTGCAGAGGTAGGTGAGACTGGG AACCAGCTGTCAGGAGGTCAGCGACAGGCAGTGGCCTTGGCCCGAGCCTTGATCCGGAAG CCACTCCTGCTTATCTTGGATGATGCCACCAGTGCCCTGGATGCTGGCAACCAGCTACGG GTAAGGTTCTGGCTCTCACCCTTTGTCTTTTTGAGCCATCTTGCTATGTGATCTTGGCTG GCCTGGACCTCACTTTGAAGACAATGCTGGTCTCAGACCCTTGGTAGTCTTCCTGCTGCT ACCTCTGGAGGGCTGGGTCACCCTGCTGTGTCATCTCCCTGAAGTCTCATTCCCATGGGA GCTTTGCTTCTGCCACTCCTCCTGTGTTAGTTATACCAACAACAGAACTGTTCAAACCTG TCCTTGGAACTCTTGGTCCCATTAGCTTTTCTCCCGGACACGGGAACCAGTGAGCAGGGC TACTGTCCTAACAATCTGTATGGGCTAAGCTTGCTTTGTGTCGTAGACGTTCTATCCCAC CCTTTGTACTAATTTGTCCATCAGAGTCTTTTGCTGTGCTTATTCTGTAGATGACAAAAT AGAGGCTAGGAGAGGTTGATTAACCTTCTAAAAGTCACACAGCTTTTGAGCAGTGGAGCC TGGGTCCAGACACAAATCATCCAAACACTCGTGCTCTTTGTTACTCTTACTCTTTTTTTT TTTAAATTAAGATTAATTTATTTTATGTGTATGAGTGTTTAGCCTGAATGTATGTATGTG CCCAGTGTCTCTGAAAGTCAGAAGAAGGTGTGGATCCCCTGGAACTGGCGTTATGGATGG TTGTGAACCACTATGTGGGTACTGGAAGTCAAGCCCTGGTCTGCTGGAAGAGCAGCCAGT GCTCTTAACTGCTGAGCTGACTCTCCAGCCCCTGCATTACATTTCTTTAGATTGACTATA AAAAATTCTCATTTTAGGGGCTGAGGGGTGGCTCAGCAGTTAATAGCATTAGTTTTAAGA GCATTAGCTGCTCTTCCAGAGGACCTGGGTTCAATTCTCAGCACCCACATGGCAGCTCAC AACCATCTGCAGCTCCAGCTCCAGGGTTTCTGACACCTGCACACAAGCAAAACGTCAATG AACATAAAATAAAAACAAATTACAAAATGTTTTCTCAGCTTATTAGTGGGTTATTAAAAA TTTGTATGACATAGGAAAGGTGACATGTGGGGTGGGTGGGGGGGGGAAGAGGAGGGAAAC GGGAGGTGGTATGGTTATATTTCATTATATTCATATATGAAATTCTCAAAGCATAAATTA ATATATGTTTTTTGGAACGTAAAAAAATTTCCACATATTAAGGCTGGACGAGGAGACCCT AGTCTTACTTCACTTAGTATGCCATCTCCCAAGACAGTTGGTGTCCTTGGGAGGCCTGCT TTTTTCTGAAGGGCAATCGAGGAGAGGTAGGGGGTTGAGTAGGAGGGACTGGGAGGAGAG GAGGGGGGAACAGCAGTCGGGATGTAATATATGGGAGAAGAATAATTTCCTTTTCAAATT TCCCAGCTTATGGGTAGAGATGAGAGACTGTTCAGTCCCCTCCCCCATCATGCTTCCGCT CTCTCTCTCTCTGTACCCCCCTCTTGTGAGGACATCTTAACAAGTCATAGGTTTGGAGGG GTGCTGCAGACCAGGGATATCGACAATGTGTCCCAGCCCTGGAAGCACAGGGGTCCCCTG AACTGTAATGTCTGTGTGTTTCTCCAGGTCCAGCGGCTCCTGTATGAGAGCCCCAAGCGG GCTTCTCGGACGGTTCTTCTTATCACCCAGCAGCTCAGCCTGGCAGAGCAGGCCCACCAC ATCCTCTTTCTCAGAGAAGGCTCTGTCGGCGAGCAGGGCACCCACCTGCAGCTCATGAAG AGAGGAGGGTGCTACCGGGCCATGGTAGAGGCTCTTGCGGCTCCTGCAGACTGACAAGGC CTCTGGACTGCACACTGCGTGCTGTCCCCCTCCTGTCCTCTACTCTGTGTGACAGAGAAC CTGGGAGCAAAGATATTACCACACCCACGGAGACAGTTGAGGAGCGGAGGTGCTTGTTAC ATGAGAAAATGTAAACTCTAGGAGATACCCGGAATTTACCACGAATGTGTTTCCCCGACC CGCTCCCTATTAGACGGGGTTTCAGGTACCTCACACCAACACTGAGCTGCTAAATCTCCG GTCTCCACCCTCCCGGTGCTGAGCTTGTATCACAGCATGCACACACAAACCTGGTTTATG TGGCGTTGTGATAGAATGAGAAGAAACGCCCAAAGTGTACAGAGAGAAAGGACAAGCAGC TTGCAATTAACCAAAGGCATAGGCTGGCATTTGGGTGTTCTATGGGTGTTTGATATTTGT AATAAAACTGGTGTTTTGTACTGTGGCTTCTCCCGTTTCTTAGCTCCCGCAAAGTCCTAG CTGAGTTAGTCAGCCCCCCCCCCCCCCCAGGACAGTGTCCCGTTCTTCTTCAGAATTCTG TTTTACTTCTGGGTCCATCAGCTTTTATTTCCTGGGGCTCTCATTTCTCTTTACTGCTCA CCCACGGACTCCTAGTGCTGAGCTGGACCGGGCGGCAGCCCCTCCCTCTCCGCACCCCAA GGCAGCAGCAACTGCATCTTGGAGTCCTTCTCTTCCTCGCTGAGGCTGGAGGAAGCGCGG TAGCGCCGCGGGTGGGGACCCCAGAAAATCAGACTGGATAACCTCGCCCGCCCGTTCAGA TTCTTTCATCTTCTCCTCAGCGGCACACGCCGGGATAATCTCAATGAAATGGATAGGATT AGCCAGTAAATCTCTTCCATTCAGGGAGGGCCCGGTGTGTGACGTCAGCAGTTCCTGGGC AGATAATGTCCATAAAGGTTGCAAAGAAGAGGTGGGGTTGAGGATTCAAGGAAGGAGCGC GCAGCCCTGACTTGCGCGACGTGAGCAGCCCCGGGCAAGGGCGCGTCCTCGTGGGTGGCT CAGGGTAGTGAGACTGTTGAACCAAGAGGGGCCCTAGGAGGGACACATGAAAAGGCCCGA CTGAGTCCTCTCCTTGGTTCGTCTTTCTCCGTTTTTTCCTGGTTGTCCCAGGACCTAAAG ACCCCTGTGCATCCATTTATCGCATTTTCCAGTTTCTATAAAATGATGCTCATTTATTTG AGTGCTGCCCCCATCCCCAGGACGCACGCCTAGGTGGATCTGCTCAATACTCCTCTCAGG TTCCAACGTTCTAGACAACCTCTTTAGGAGATAGGACCCTATTCAGTCCTCCGCTGTTCC CAGAAGATGCCCCCCCCCGTCCCCCGCCTGTGGGTCTTCACGCACCCCACTGCTAGGCGG CCTCCGAAGGCGCACCTCTTCTTCCACCCCACAGCCCATTCTCTAGCTGGTTTCACTGAT GTGGCAGCAGGAAAACTCGTCCCCAACACATTGTTTTAGTTCAGACACCCATTAACTGGG CTCTACTCGGAAAGGGCAGGGGATGGGGGTGGGGGACTGGTTCCCTCCCCTTGGTACTGT GGCTTTCGCTTTCACTTCCTTGTCGCAGAGTCGACGGATCTTCGGGGCCAAGTGGTCATG GCGTTACTGGATCTGTGCGGTGCCGCTCGGGGGCAGCGGCCCGAGTGGGCTGCCCTGGAT GCGGGAAGCGGGGGTCGCTCGGACCCGGGACACTACAGTTTCTCCGCGCAAGCTCCGGAG CTCGCACTTCCCCGGGGAATGCAGGTGAGGACTGTAGGGCGTTCTGGAGAGATGCAGGAG GTGGGTGGTGGTGGGTGGCACAGAGGAAGGAGTGTCTGCCTGGGTCTGAGGAGGTGAGGA CGCCAGGAGGGGCCGTCCAGGAGAGCAGCATCGAGGCTAGCCCTGAAGAACCAACGTGGA GATTAAGGCATGGGAAGGCGGGAGAAAGGGGTGGGGGAGGGACAGAAGGAGAGAGAGTCA CGCACGGAGTTGAGACAGCGAGACTGAGAAGATGGTTGGTGCCAATCCCAAGACACAGTG CACAGACCACCATGCCTTCCACAGACTCACTGCTAACTACTACAGGGGCTGTACAGTTGT CTTGGAAGACCTATGAACTTTGGTGGCCTTACTTGGTCTCAGCAACCCACCCTGTGTGTC CTACGACACATTAGATGGCCTAGGTCTCAAGCCCCTCTACTGTAAAATGAGAGCAAGTTA TTAAAATGTGCTTTCGAGAACCAAAGGAGCCACGGATTAGGAAACACCTTGAAGTCGCCT ACCATGACCTTTGTTCCCACGTGCTGGAAAGCAGAAAGCTGGTGGGCTTAAATCCTGCTT TTCTTTCTTCGGAGCTACTGACATCTAGAGTCTGCAGACCCCTCCTCACTCTGCCACCCT GCCAGGAGCCTCCTAGCACTGAGGTGCCCCTCTGCCTCTTGCATCTCTTAGCCCACCGCA TTCCTGAGGTCCTTTGGTGGTGACCAGGAAAGGAATGTTCAAATTGAGATGGCCCACGGC ACAACCACACTCGCCTTCAAGTTCCAGCATGGCGTCATCGTGGCTGTGGACTCCAGGGCC ACTGCAGGGAGTTACATTAGTGAGTATGTGTGCTCCATGTGTGCTCCAATGGTCCGACTC GTGGAGCTGTTCCCTCAGTAGAGCAGAAGGCCTGGGCCGAAGTTCAGACAGAGCTGGCAT TATAGCACACTGAGGGTGGGGGTGGGATGGGGGGTGAGGGGTGGGTGGGGAGCTGTGGGC TCATTTCTTTGATCTCAAAACTCTTCCAGGCTCCTTAAGGATGAACAAAGTGATCGAGAT TAACCCTTACCTGCTTGGCACCATGTCTGGTTGTGCAGCCGACTGCCAGTACTGGGAGAG GCTGTTGGCCAAGGAGTGCAGGTAGGCCGGTTTTATCATCTCATTTGTTCAGCCCCTCCC CCGTCCCCACCATGTCCCAGGTCACTTACACCCCCATCGGGTGATCCATTTTAGCAACCA TAAGGGATATATATATATATATATATATATATATATATATATATATATATCTCCTTCATG TGATTAAAAATCTCCCAAATCCTAGCCTGGGTCCCTGCTTATAAACCAGATAATCTGGCA GTCACTTAACCTGCAGGGTGGTATCATTTACTAGGCTTTTAAAATGCGGATCAGAGATTT TAAATTCCCAAACTCTCCTTTACTCTTATGTCCCGTCCCACAAGTCCATACCTTCCAAAC ACTCATCTCTACAATCCCTGCTCCCTCGTGCTATGGGAGAAAATGAATGCAGGTGTAGCT GCCGCCCCTGAGGCCTCCTTCTCTCTCCTCCTCCTCCTCGATCGATCGTACAGGTTGTAT TATCTTCGGAATGGGGAACGCATCTCCGTGTCTGCAGCATCCAAGCTGCTTTCCAACATG ATGCTGCAGTACCGGGGGATGGGCCTCTCCATGGGCAGCATGATCTGTGGCTGGGACAAG AAGGTGGGTGGCCTATGTCTGTGAGCCCCCCCCCCCCCCGAGGTGTCTTACCCATTGAAC CCTCCCCTCCCCCATGCTTGATCCAGGTTTTGATGTTTACCAAAGTGTGCTGTCTTTTGT TTTTGTTTTTAAAATTCATTTATTTATTTTATGTGAGTACACTCTTGTTGTCTTCAGACA CACCAGAAGAGGGCACTGGATCCCGTTACAGATGGTCGTGAACTACCATGTGGTTCAATT CTGGCAGTTGAACTCAGGACCTCTGGAAGAGTAGTCAGGGGTCTTAACCACTGAGCCATC TCTCCAGCTCCCTAAAGTGTGCTGTCTTAACTCAAATATTTCTATGGTGGCATCACTATG TTGCTTGCTCTCCACAAGTCACACTTGCGTCTTGATATGATCAATAAACCAAGTTCAACT CGGGATGGTTTCCCATCTTCTAGGGACCAGGACTTTACTACGTAGATGACAATGGGACTC GGCTCTCGGGACAGATGTTTTCCACTGGCAGCGGGAACACCTATGCCTATGGGGTGATGG ACAGTGGTTACCGGCAGGACCTCAGTCCTGAAGAGGCCTACGACCTTGGCCGCAGAGCTA TTGCTTATGCTACCCACAGAGACAACTATTCTGGAGGAGTCGTCAACAGTAAGAGACCAA TGCGCCCCACAACACCTGGGGAGACCACTGCTCCCCAGCACCTGGGAGGAGGGGGATGTG GGGGGAGCTTAGATTGGGAGCCTCGGGGGAGATGAGTGGAGATGTCAGGTCTGAGAACAC TGAAGTTCCAGACAAAGGCTTTCAGTGTGTGTGTGCTTAATGCTCATGAAAGCTGCTTAT GCCACACCATTCTGGCAGAGACTTGCCCAAGAAAGGCCTGACGCCATGTTCTTTTCTCAA TCGCCCACAGTGTACCACATGAAGGAAGACGGTTGGGTGAAAGTGGAGAGTTCCGATGTC AGTGACCTGCTGTACAAGTACGGAGAGGCCGCTCTGTGATGGCTGCTGGGCAGGCCTCCC CCAGCATTGGTGGCACTGGCTGGCAGACTCAGAGACCTGGGACTACTTCAGTCTTAGGAA AAAGAAGGGCTCAACCTGGGCTGGAGACAAAGCTCTGTTTACCCTCTCGGCCCCCGCACT CACAGATACCTTCTAAGTACAATAAAAGAAAAACGGTTATACATGTCTCTGGGTTGTGGC TGAATGGGGTCAGGCTGTGGGGCCCTTTGGAGGGAGAGCTAGGGCACAAACAGGAAATCA GGCGAGGCTTCCATTGAGAAGGTGTTCGCCAGGTTCTTCCTGGACGCCCTTCCCCTGCAT CTCTGGGGAGGACCGTCACCCATCACTTTTCTCTTTGGAGAAGCGTTTTCATTTGGCCCT TCCTGGAGTGTCATGGTCTCGGGACTCCAGTGTGGCCCCTCATGTATGTTTTGGGGAAAC TGGGAAGACTTTGTGATGACAATAAGCATGGATGCTCAAGTAACACCTGGGTGACATTGG ATAGCGAATGTAAAGTTTGCTGAGGTTCAGTTTCATGTTTCACCCCTGGCTGCAAGGTGC AAGCACAATAGAGAGAGATGAGCAAGACTCTCTGGGGTGGGGGAAGCAGAGGAGAAAGTG AAAGAAAAAATGGAACCCTTGGGTCTTGTGTAAGTGCAGGACTGCTCAGCATAGGAGTGC TCAGGACAGGAGTACTCAGCACAGGAGTGCTCAGAACAGGAGTAATCTGCACAGGAGTGG TCAGGACAGGAGTGCTCAGGGCAGGATTACTCAGCACAGGAGTGCTCAGTGCAGGAGTGC TTGGTGCAGGAGTGCTCAGCTCAGGAGTGTTCAGGACAGGAGTGCTCAGGATAGGAGTGC TCAGGGCAGGAATGCTCAGCACAGGAGTACTCAGCACATGCATGCTCAGGGCAGGAGTAC TCAGGACAGGAGTGCTCAGGGCAGGAGTACTCAGTGCAGGAGTGCTCAGTGCAGGAGTAC TCAGCACAGGAGTGCTCAGTGCAGGAGTGCTTGGTGCAGGAGTGCTCAACATAGGAGTAC ACAACACAGGCATGCTCAGGACAGGCATGCTCAGGGTAGGAGTACTCAGGACAGGAGTGC TCAGGGCAGGAGTACTCAGGGCAGAAATGCTCAGCACAGGAGTACTCAGCACAGGAGTGC TCAGGGCAGGAGTACTCAGGACAGGAGTGCTCAGGGCAGGAGTACTCAGTGCAGGAGTGC TCAGTGCAGGAGTACTCAGCACAGGAGTGCTCAGTGCAGGAGTGCTTGGTGCAGGAGTGC TCAACATAGGAGTACACAACACAGGCATGCTCAGGACAGGCATGCTCAGGGTAGGAGTAC TCAGGACAGGAGTGCTCAGGGCAGGAGTACTCAGGGCAGAAATGCTCAGCACAGGAGTAC TCAGCACAGGAGTGCTCAGGGCAGGAGTACTCAGTGCAGGAGTGCTCAGTGCAGGAGTGC TTGGTGCAGGAGTGCTCAACATAGGAGTACACAACACAGGCATGCTCAGGACAGGCATGC TCAGGGCAGGGGTACTCAGGACAGGAGTGCTCAGGGCAGGATTACTCAGCACAGGAGTGC TCAGTGCAGGAATACTTGGTGCAGGAGTGCTCAGCTCAGGAGTGTTCAGGACAGGAGTGC TCAGGATAGGAGTGCTCAGGTCAGGAATGCTCAGCGCAGGAGTACTCAGCACATGCATGC TCAGGGCAGGAGTACTCAACACAGGCATGCTCAAGACAGGAGTGCTCAGGGCAGGAGTAC TCAGGACAAGAGTGCTCAGAGCAGGAGTACTCAGGACAGGAGTGCTCAGGGCAGGAGTGT TCAGGGCACAGCACAGGAGTACTCAGCACAGTGCTCAGTGCAGGCATGCTCAGTGCAGGA GTACTCAGGACAAGAGTACTCAGTACAGAGTGTTTGGTGTAGGAGTGCTGAGTGCAGGAG TGCTCAGTGTAGCAGTGCTCAGTGCAGGAGTGCTCAGGGCAGGAGAGTTCAGCGCATGAG TGCTCCGTGCAGGAGTGGTCAAGAGCCAGGTCAGGGGTTAGAGGACTCTGAGATCCAGAC AGCCAGATGGGAGCCTTCTCCACCTGGGGTAGCCCTAAAGTCCAGAGAGATAGGCATAGC CATGTAGGCCTGCTTTAAGGCCACCCCCAGCCCCCCCCCCGCCCTCAACATTTGACCTTC AAGTGACTCATGGGTAGTCACACCAGCATGTCTAAGGGGATTTTTTTTCCTTTATAGGTA GTTTCAGCCCGCAGAGTCATTTCTCCTTGTAGTGCCCTGGTGGTGGGGTGTGGTGATGAG CAGCATGGTTGATTTTCATGTCTGAGAATGGAACCTGGTGCCTCACCATGCTCTGTGAGG GCTCTTCCCTGGAGCCCAGAAGGGTGATTTCCGCAATGAACTGGGCTCTGGGGAGGAGGC CGGGTTCCCTCTTTGATGGTGTTAGCCTACAGCCTACTCTGACTACCTCACAAGCAGCAG GCCCTGGCACTGACCCAGGGCCCTCACTGCAAGTGCGGTGTGCTGCGAAGAAAGTCTGAG GACAAAGGGCCAGAGCCTCTGGGTTCAAAATCTGTGAAAGGGAACCTTTGGCCTGCTGAT AGGAGCTGAGGCCTTCTTGTAAGCCCTAGTTTTACCCCAGACCCCAACTCTTGAGCTTAC CTGGAAAAACAAACAAGCCCTCAAGCCTCTCTTCTCTTCCACCCTCCGTCCTTCTCTCTC CTCTCTTCCTTTTTCCAAAGGTGGGACACCTGTGTGGTCTGCTGACTGGGAGGGACCTGA AGTCACTCCCTCCTCCATTTTCCTCCCTCCCCTTCCTTCCGTCCACGACCATTCTCTTCC CTCGCCTTTCTCCTTCTCCTATGCTCTTTTCTGCCCTTTACTCCTCCTCCTCTTTCCCCT TCCTCAAACCTACTGGCAGCGAACCCTGGGCTCAGGCAAGTTTTCTCAACATCTGAACTA TAGTCCCAGTTTAACCGGCGCTTCTTAAAACATGCTCGGAGGTCGGAGAAATGCAGGGTT TTTTCGTTTTTTTTTTTTGTTTGTTTTGTTTTTTTTTGTTTTTGTTTTTGTTTTTTTTTC CTTTTCAAAGCATCTCAGACCCTCAAGAGTTTTGCTAGTAGCGGCCTTGGAGGGCGAGCC TTTTTGGGAACCTGGGGCGCTCAACCCACCCGCAAATTGACAGGCGCCATCTGCTGGCGG CTGTGCGCAGCACCGCGACCACGGCAGTGAAGTGAAAGCGAAAGCCGCGGGACCCAGGCG CGCTCCCCGCGAGGGCGTCGCTGCGCACCCAGGAGATCCAGTTTGAGAAGAAGCAGATTC CAGAAGCTCTCCTGAGCTGCCGCTCCGCAGCCGCAGGTGAGTTCTTTTGGATAGAACCCG AGAGTTAGCAGGAGTGCGGCCCATTCCCAAACCCTTGGCGTCATCATCCGGTTCCCCACT CCTCGTCCCCTGTCTTGGGTCTTCTGCCGCTTACTCCCTGCCCCGTGTCCTCTGCTCCGT GCCCCTGCCCCACCCAGTGTCCCAGGTCCCCTGTCCCTCACCCCTTGCCCAAGGTCCTCT GCCCCACCCCCTTGCCCTGCGTCCCCGGTCTTCCGTCGGGCGCCGCCGGCCCAGCGCCCC TACTCAGAACCTTCTGTCCCAAGCCATCTAAGGCTACCGAACCCACCCGCATCCCGCCCC TGCACCGGGTCTCCTGGCTCTTAAAGACCCGAGGAATGGGGGCAGTGTGTCTTCTTGGGC TAACACCAACAAACTTCAGGGAGATGGATGTGGTGGCAGCAGACCGCCCCCTCCCCCACC CCCACCCCCGTGCTGTGTGTCTGAGTGTCTGTGTGTCTGTGTGACTGTGTGTGAGAATAA TGCAGCCTTCCCAGCTCCGTCAGACAGTCAGTCCTAGGAGAGACTTATCTAGGAGGGGGT CTTTCCGGTGAACAAGAAGCCTCAGGGTGGATTTGGGGCAGGAGGCTCGTAACCAGGGTT GGAACTCCACAGACCTCATTTCTCCCTTTCTTTCCGCAGAACCCACCATGGCGCTGTCCT ACCTGAGGCCCTGGGTCTCTCTGCTGCTGGCGGACATGGCTTTACTTGGGTTGCTACAAG GATCTCTGGGAAATCTGCTTCCCCAGGGGCTGCCAGGACTCTGGATAGAGGGCACCCTGC GACTTGGAGTGCTGTGGGGACTGCTAAAAGTGGGAGAGCTGCTGGGACTTGTGGGGACCC TTCTGCCCTTGCTCTGCCTTGCCACTCCCCTGTTTTTCTCGCTAAGAGCTCTGGTGGGAG GCACCGCGAGCACCTCAGTAGTCCGAGTGGCTTCTGCCTCTTGGGGCTGGCTGCTGGCTG GCTATGGGGCTGTTGCGCTGAGCTGGGCCGTGTGGGCTGTGCTGAGCCCGGCTGGAGTCC AGGAGAAGGAACCAGGCCAGGAGAACAGAACACTGATGAAGCGGTTGCTGAAGCTGTCCA GGCCGGACCTGCCTTTCCTCATAGCTGCCTTCTTCTTCCTTGTGGTGGCTGTGTGGGGTG AGAGGAAGAGACCACTGTGAGAGGGAGGTGGGAGAAGGGCCTTGCCAGGGCACAGCCTCC TTATCTTTCTTGCCTCTTTCAGGGGAGACATTAATCCCTCGCTATTCGGGTCGTGTAATT GACATCCTGGGAGGTGATTTCGACCCCGACGCCTTTGCAAGCGCCATCTTTTTCATGTGC CTGTTCTCTGTTGGGAGGTGAGAGATGATTGGCTTCAGGTCCCTGTAGTAGATGCGACTG GACAGGAACTGACTTTGCACAAGGCACAAATTATGTATACAGAGTTCTGCCTGCATGTAC ACCTACAGGCCAGAAGTGGGCACCATATCCCAGTATAGATGACGGTGAGCCACCAGGAGG TCTCTGGGAATTAAACTCAGGACCTATAGGAAGAGCAGCCAGTGCTCTTAACTTTTGAGT CATCTCTCCAGCCTGCCTTTGACTCTTTTTATCCGGACCCAGGAGCCTGCAATCTCAAGT AAACAAATAAAAATGGGGCTGCTTGGCTGGGCTTTGACTAGGATAAGAGGACCCAGATAC AGAGAGTGCAGGATCTCTCTCTCTCCCTAGTCTTTCATTAGGCCTCCATTCTAGTTTTGC TGGTTTTGTTTCGTCTTTTCTCTTGTGGACTCCTTATGGACTCCTTGTGGACTCCCGACT CAGGCTTTATGTCTCTTAGGTATCCCTGTAGCTTTGACTATTGTGGTTCATACTGATCTC TTTCTGCAATTAGCATCTATGAACCTCCCTTCTACCTTTGGATCTACTCTGTCTTCTTTG GAGGATTTTCCTGTTGTAGATCCTTAGGTGTGGCCCGTTCTCAGGTATGTCCTTTTCTAA ACTATGCACTGTCTTTCTTTTGTGGTCAAGGGTAGGCATGTGCACTAGAGGCCCAAGGAC AGCTTGCTGGAGTCAGCCCTGTCCTTCCACTGTGTGGGGTGCAGAGATGGAACTCACACA CGGTGGCAAGTGCCTTTATCACCTGAGATGCACCACACAGTGCACTTTGATTTCTTAAAA ATATTCTTCCTTCGGTGGAGGGAGCAACAGTGTCAATTGGCCAGACCAGACCACCCCCCC CCCCAGCTCCTGGGCACTGGACCACCAATCAAAGAATACCCATGGCTCCGGCCGCATATG TGGCAGAGGATAGCCTTGTTGGACATCAGTAGGAGGAGAGGCCCTTGGACCTGAGGGTGT TCAATGCCCCAGTGTAGGGGAATGCCAGGAAGGGAAAGACAGGAGTGGGTGGGTGGGGGA GCACCCTCATAGAGGCAGGGGGACGGGGGATGAGATGGGGGGTTCTGAAGGGGAGACCTG GGAATGTAAATAAAAAAAAATCCACTAAAAAAAGAAGCAAAAGAAAGAAAGAACAAGAAG AAAAGAGAGAGAGAGAAAAAAGGAAAGACAAAAACAAAACAAAACAAAACAAAACAAAAC AAAACAAAACAAAAAAGCCGGGCAGTGGTGGTGCACACCTTTAATCCCAGCACTTGGGAG GCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGA CAGCCAGAGCTATACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAAAAAAAAAA AAAAAAAAGGAAAAACTATTCTTCCCTCTGCTGGATCAGGTTCTTATGGCAGATGATTTT CAGATGCAGTTTCACACCTGGCTCTGTTTTATAAACCCGGTTGTTCCAGGGGCACTGCTG CTGGTTAGGGACTCTCACCTGCCATGTTGTGTGCTCAGAACCCCAGTGCCTCACACTCCC TTCTGGTCCTTCCTAAAGATGTCCCCTCCCCTTTCCTGTCCCCACCCACAACCTCAGTAC TTCGCTTTGGGCCTCAGCCTGATGCCCAGGCAGCATCCTGCTGCTTTCAGTCTCTCCTGG ATTAGGGAGCTAGCTCAGTGAATTCCATCTTACTGTGCAAACAAGGGGACCTGGGTTTGA ATCTCCAGCACCCAGGCACTGTGAGTCTCAGGGTGTGCGGTGAACACAGGTGGATGTCAT GGCAATGGTGCATGGGCAATCTAGCAGAAATGGGGCTCTAGGTTCAGACCAGGTCTTCAA AAAATAAGGTGGAGAGTGATCTAGGAAGGCATCTGATGTCAACCTTTGAACACACACACA CATGCATGTACACACACATGGACACATACATGCACACACATGTACACGCACGCATGCACC CATATGCAAACCACACACATGCACAGGCACACACACAGAGCAGTATACCTGGATATGCAT ATGCACATGCACAGAGCAGTATACCTAGATGTTCATGTCCACCCTCATGCAAAACAGGCG CGCGCGCGCACACACACACACACACACACACACACACACACACACACACCCCACTTCTTC CATCGGTGGCTCCTTTTCATTCTTACTGTGCCCATCCAAAGCCCACCGATTCATGTCTGC TTATTCAATATGGTAACCAAATCTGCAATTGAAACCCATATTTTGGTTTTTTTTTTTTTG TTTGTTTGTTTTCTTGTTTTCCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGA ACTCACTCTGTAGACCAGGCTGGCCTCGAACTCTGCCTTTATGCATTTAGAAAATACGTC TTTAAGTTTTTATTGTAAGAATTTGGCTAACTTACAAGGCTCTCCCAAGGATTAAAGATG AGATTGGTGGCTGGGTATCCACGGAATGGGAGGGAGGGACTTACTGCTGCTTCCTTTGGA AGCACGGTGGTCAGTGAGCCTTGGGCACGCGGGGATTTGTACCGGTTGTGAGAGTGAGCC CACATCTAGCTCCTGTGTCTGCCCTTACTAATTGTTTCTCTGTTCTCACCGCTGTCTTCC CTCCCCCTTCTCTCCACCTCTCTTTCCACCTTGCCCTTCCTTTGCCCCTCCCCCTCCCCC CTCCCGCTTCCCCGTCCTGCCCCCAGCTCCTTCTCTGCAGGCTGTAGAGGAGGCTCCTTC CTCTTCACCATGTCCAGGATCAACCTGCGGATACGAGAGCAGCTTTTCTCATCTTTGTTG CGCCAAGACCTTGGATTCTTCCAGGAGACCAAGACAGGTGAACCTGGCATCTGGGTCTTG GGTGCTCGGCCCTTTCTGGAGTCCTCAGGTCTCCTGTCTGCCTCCCTGCTGGAGCCTGGC AGTTTTCTCTTAGAGCAGGGTAGAGGTCTAGCCCAGTCTCTTTGTAAAGGCTGAGGGGAT GAGTCAGCAGGGAGACCCAGAGGAAGGTTTTGGGTTCCCATCATCCTTTCTGCCCTCCCC AGGGGAGCTGAACTCGAGGCTGAGCTCTGACACCTCTCTGATGAGCCGCTGGCTCCCTTT CAATGCCAATATCCTGCTGCGGAGCCTGGTGAAGGTGGTGGGGCTCTACTTCTTCATGCT CCAGGTATCGCCCCGACTCACCTTCCTCTCCCTGCTGGACCTGCCCCTCACGATAGCAGC TGAGAAGGTGTACAACCCCCGCCATCAGGTATGTGTGCATGTCACAGTGCCCTGAGAGAA GGCAAACAGACAAGCAGACAGACAAATAAGTAGATAGGTAGGTAGGTAGATAGATGGGTG GATGGATAGGTAGGTAGTAGACAGACAGACAGACAGACAGACAAATAAGTAGATAGGTAG GTAGATAGATAAATAGGTAGGTAGGTAGATAGATAGATTGATAGACAGATAATCGGTAGA CAGACAGAACACCTCTTATCAGTCCCTACAGTCCATTCTATGCTTGCACAACATTTTGCT AGTTCAGTCATTCACTGATGGACATTTGAGTTGAGGAGGTTGGAGGCCCACTGGATCTAT AAACAGAAGTGGTTCAAGTGCTAGCTGTGTTGGAGAGCGAGGTGAGCCCCCGGGGTGTCT TTCTGCCTTCCAGTGAGCTTCTCAGAGTCTGTCTATGCCCTTCCCACAAATGACTGTGAA TCAGAGTGAAGGACATCTTAGGAGGTTTACACTCATTTATTTGTTTTTATTTTATGTGTG TGGTGTTTTGCTTGCATGCCTATCATTTGTGTGCATTGCCTGAGGAGGCCAGAAGAGGGC GCCAGATACCCTGGGACTGGAGTTACAGATAGTTGTGAGCCACCACGTGGGTGCTGGGGA TGGAACCCAGGACCCCTGGAAGAGCAGCCAGTGCTCTTACCCACGGAGGCATCTCTCCAG CCCTGGGAAGTTTTCCCTTTCCCCTCAGCATACACAACTGGATGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTATGTGTAGTAAACCACACAGATGTGAAACTCACTGCATTGCTC ACTTTTGGGTCATAGTTCTGAGCACAGCCTTCTGATTTGTCCATGTTTCCCCCCAAACTT ATTGTCATTTTATTTTATTTTTTAAATTGGAATAAAAGCCACCATCCCCTGCAACACGAT GTGGTGCAGTGGCTCATTGTGGCTTCGATGTGCATTTTTCTAACCATTAACGATGTTTTC ATGTGCTTATGGGACATTTGCCACATTCTTTATATTTTTAAAACTGTATTTTAAAAAATG TATTTCACGTATATCCCAGATGTTACTTGACATGCTGGTGACACATGGGTAGGCTGGTGA CACATGGGTAGACATGTGGACAGGGTCCTATGCTGGTGACACATGGGTAGACATGTGGAC AGGGTCCTATGCTGGTGACACATGGGCTCTGATGGAACTCACCAAGACAGGAAAAGGCTT CAGGAGAGGGCTGATTAGCGACACCGAGTATGGCTGCAGCAGAGATGCAGAGAAGCTGAG CACAGGGGCTGCCGTTGCAGGGATGTTTCTGCATGCAGTCAGGCTGTGTTTAGTGTCAAA GTGTCCCAGAGCACTTAGTCATGCTGTACTCAGTGTCACTGTGTCCCAGAGTAGTCAGTT TGTGGTTATCTTGGCCTTGAGGCACTGGCAGACTCACCACAAGTCAGAAACGGCTCAACC CAGAACATGGGTCTTAAGGTGGCACCCAGACTTGGCAGCTGGGACTTGTGGTTAACTCTG AGGAGATAACGGTCATGCTCAGAGGCAAAGGATCTGCTAAGCCCAGCCTTCCTGAGGCAA AACAGTCTTGTGTGAAGTTGGGGTGACTCAGGCCAGCTGTCACCCCAGAACAGCAGCTGC TTACCATGACCTTGATGGCTTTCTCATTGTGGACAGGGTCCTGTGCATCTGTCTTTGTTG CCTGCACTTTTGGTGTCAAATCCAAGAATTCATTGTCAAATCTTAGCTAATTGGGGCTGA AGAGCTGGCTCAGTGGCTGAGAGCCCATACTGCACTTGCAGAGGGCTGGGATTTGACCCC CAGCTCCTGTATGCCAGCTATTCAGCTGTCTTTTCGGGACTCACCTGCACTCATGTACAC ACACACACACACACACACACACACATACACATACACACACTAAATCTTTATAAAAAGAGT TTTTACAGTTTTAATTTTTACATTTATGTCTTTGATGCATTTTGAATTACCTCTCCATCT TTTTAAAACATAAGGATTTATTTTATTTGCACATTTCTGTGTGTGTGTGTGTGTGTCCGT GTCCGCAGAGGCCAGACGACAGCCCCTGATTCTCTGGAGCTGCAGTCACAGGTGTTTGTG TGGCATGGTTTGTGTGCTGGGGATTATACCCTGGTCATCTGGAAGAGACACAAGCTCTCT GAACAGCTGAGCCACTTTGACAGCCACATCTCCACCTTTCTGAATTACTGTCTCTCTCCT CATTTGACATCACATGCAAGAATTCACTTCAAATGAAAGCTAAACAGAATAGCACCACAG TGCTTAACAGGGAGAGCTCAGCAATTCACATATGTTTTCTACTTCCTGTGCTCTGTGAGT GTGCGTGATACACTGGGACAAGCACTTTACCCATGGAGCCATCTCCCCAGCATCTCATCT CCCCTCCCCTCCCCTCCCCTCCCCCTCCGAAAATATTCCTTCTGGAAAGAAAGGCACGGG GCAGTGATGAATTGCTGGAGGGAAGCCCCTGCCTGTTGTGTTCTGCCTTATTCACCGGTT TTATCCGCTGCCCTGTTTTCAGGCGGTGCTAAAGGAGATCCAGGATGCAGTGGCCAAGGC GGGGCAGGTGGTGCGCGAGGCGGTAGGAGGGCTGCAGACTGTGCGAAGCTTTGGGGCCGA GGAGCAGGAAGTCAGCCACTACAAGGAGGCCCTGGAGCGATGTAGACAGCTGTGGTGGCG CCGAGACCTGGAAAAAGACGTGTATCTAGTCATACGGAGGGTGAGGTGACCTGTGCAGGG TGCTGGGTGCAGGGTGCAGGGTGCAGGGTGCAGGGAGAGGGCCAGTGGAGGGAGCGGGAG GGATGAGGAGCCAGACCTCAGGAGGCTTAGGGGACCAGTGCTGCGCAGGGACTGGGGACT CGCTCACCTCTCTCCTGTCCAGGTGATGGCCTTGGGCATGCAGGTGCTGATTCTGAACTG CGGCGTGCAGCAGATTCTGGCTGGAGAGGTCACCCGGGGTGGCCTGCTCTCCTTCCTGCT GTACCAGGAGGAAGTGGGACAATATGTCCGGGTGAGTGAGGTGCACTCATGAGATGCTCT GTGTTTCCATCTGGGCTTCTGGGCCATGAGTTAATTTTCTCATGGATAATTTTAAACATG CTTTAAAAAAGCCATTATTGTGATAAGTCTTCAGGTAACTTTTATCAGCTTTGACAATGA TCATAACCCTAAATTAACCCAAACCCCAACCCTAACTCCACCATAACCAACTCTAACCCT AGCCTGACTCCACCCTAAATTAATACTAACTCTAACCTCATCTAAACAACTTCAATTCTA AATAGCCATAATGATATCTTACCCCCACCCTGGCTAATCTTATCCCTAACTGCAATCTAA ACAGAACCCTACCCCACACCTTAATCTAACCTTAATTCTAACCTACCCCAATAACCTGCA GTGTTCGATCTGCCTTTATTTTAAAACAAATTCAAGATATCAAATCTCATCTGTAGGGAT TTCAGTGTGCACCCCTAGAACATAGATATCTTAAGTATGCAGTCTGAGTGCCATTGTCAT ACCTAAAAATAACGATTCCTTCCGTTCATCCCGTACACTCAGTGCGCAGAGCTCCACAGG TATACACGCTGTGATTGGCTGACGCCCTTCCAATCTCTGTGTCTACTGGTTTAAAATTCC CACCTTGCTATTGGCTGAAGGAATGGGTCTTTTTGTCCTGTGCTGTTCCCTGTGGCCTGG GTTCTGTGTCTTCTGATTTGCAGTATTATTCTGCAGCAGCATTCCAGTGTGTTCTTCTGA CTGTTTCCTATCCACTGCTAGGTAAATCCGTAAACTTTAAAATCCAGTGCTTCCCTCTTT CAAATTATGGCTGTGTTCTTTCTCCGGGAGAGACAACATATCCGGTTCTCTTGGTGTTGG TTGGTGTCTGCCTTTGATGCTTAATGCCTGCATTTGTTAAGTTACCAGGGTTGCAAAATA GTGCTGTCTGTACTTCCTTCCCTTATAACTTGGATACATCAATCGAGAGACTTAACCCCA TCCACTATTGGGGTACTTAGTAGTATACTTTGATTAGAAAAGGTATTTAACTATTTCTTT CTATTTGATCACTTTAAAAAAAAAGTTACTTTGCTTTGGGCATTGAACGTAATTTTCCCG GTTACTTCTTTACCATCTTTCACATGTGGAGAGCTGGGCCAAGCTCTCTGATGATTTTAA AGGTGAGCTGGCCGTGATGATTGCTTTATAAAGGATTCCCTGTCTGGAGCATACAGGGTG CAGAGCAGTGAGCGAAAGCTGTGGCTCTTGACATGCTGTGTGGATCCCACAGCTTTTCAT CGCAAATCGGAACACTGAAATACTTCTGCATCTTTTAAAAATCCACCAAACTTACTCTGG GGACAGTGGCACAAGTCTGTAACCCTATGGCACAAGTCTGTAATGCTGAGGGAATACGTG ACATTCGAGGTTAGCCTGGGCTAAGTAGCCAAAACTGTTTCAGATGAACAGAGACAGAGC CACCCTCCACTCCTAACTAAAACAATCCCTCCAAGGTTCCCTCTCTGAGTTTATCCGAAT CATTCATTAAAAGGTAGAAGGTTCTTGTTGGGGGTAGGGAGCAGGAGAGGAGGACCGGCT GAGGTCAGGGTGTGGGTAGAGTGTGTGCCGGTCCTGGCTTGCTGACGTGTCCGTTCCTGA TTTCCAGAACCTGGTTTACATGTACGGGGATATGCTGAGCAACGTGGGCGCTGCTGAAAA GGTGTTTTCCTACCTGGACCGAAAGCCGAATCTGCCCCAGCCTGGGATCCTGGCCCCTCC CTGGCTGGAGGGGCGCGTGGAATTCCAAGACGTCTCCTTTTCGTATCCCAGGCGCCCCGA GAAGCCTGTGCTCCAGGTGTCTGAGGGAGACCCCGTGGGATCGGAACCTTTCTCTCTGCT GCGGAGGTCGGGCTCCCGCAGCCTGAACATCATTTTCTCTAGGAAGCTGCTCTGAACTCT TCCCTGTTTTCCTAGGGTCTGACGTTCACCCTGCATCCTGGAACGGTGACAGCGTTGGTG GGACCCAATGGATCAGGGAAGAGCACCGTGGCCGCCCTGCTGCAGAACCTGTACCAGCCC ACTGGGGGCCAGCTGCTGCTGGATGGCGAGCCCCTGACCGAGTATGATCACCACTACCTG CACCGCCAGGTGGGAGGGGCACCAGAGAGGGTGGGGCAGGAGGGAGGAGGAGCAAGCATG ACGGGGAGGTGGGGCAGCCCCTGGGAAGGAAGGCTGGGGTCCATCATGAGGAACAAAGAA GGAGGTACTAGTTCTTTGCTCCTTTCCGCTCTGTACAGGTGGTTCTGGTGGGGCAGGAGC CTGTGCTGTTCTCGGGTTCTGTCAAGGACAATATTGCCTATGGCCTGAGGGACTGTGAGG ACGCTCAAGTGATGGCAGCTGCCCAGGCGGCCTGTGCAGACGACTTCATAGGGGAAATGA CTAATGGAATAAACACAGGTACTTACAGGTCCCGAGACCACCCTGGCAGGGGCAGGAGAA AATGGGGCTAGGGAGGGAGCTCATGTAACAAAGTGCATCGTTGCAAGCATGAGGGCCTGC GTTTGATCGCTAGAATCTTTTTTTTTTTTTTTTAAACGAAAACCAAAAAGCAAAACAAAA CAAAACAAAAACCAGACTAGGAATAATCTCTGCCCTGCACAGGTGCCCACACCCACACAC ATGCACACGCAAGGCTCTCTCTCACACACACACACACACACACCCACACACACACACACA CACACACACACACACACACACACCAGATAATGGAATTTATTCTTGGGGTGATGCTTGTAT CCCCGTTGCTCCTCCTCCGTTCCCGATTTTCATTTTTCTCCACCTCCAGCTCCCCTCCTG TCAGGCTTTCCTACCTTCTGATTGACTGACAGAAGCAGATCGGGGGAACACTTTGTCTTT GCTGCGGGGAGGGGTGTTTTCTGATCACGGGTGTCTCAGGAGGGGCTTTTTCTCTGATTT CCTCAGAAATCGGGGAAAAAGGGGGCCAGTTAGCTGTGGGACAGAAGCAACGTCTGGCCA TTGCCCGGGCCCTTGTGCGGAACCCACGGGTCCTCATCCTGGATGAGGCTACCAGCGCCC TGGACGCCCAGTGTGAACAGGCCGTGAGTACCAGCATGGAAGGGCAGAGGACAGTGGAAT CTAAGGGATATGTTTGCAGGGTCAGGTGGCATACAGCTGAGCAGGGCTGATGTCCCACAG ACCCGGAGAATGTCTGCACTTTGGCAGGGCTGAGAGCTGTAATGGTTACTTTTGTTGCTG GACCAAATCCTCACAGATTGTGCCTTGCCTGTGTCCTGGGCTTTCTCAGGTTGTTGGCAG TGGAGTTAACTCTCTCCAGGATGAAGAATGGTGATGGTGGGGTGTCTGGTCCTCCATAGC TGCCTTTCCCAATGACAGCTGTACAGCCATGGTGAAGGGCGGACCCCTATTGCCTGCCCT TTGAGGCCCCCTGCACATCCCAGACTTTCTTTAGCCTGAGTCACAGGGACAGCCCAGCTG CTGTGTTCCATTCATTGCCTTTGAGTCTGTGATCTGTCCTCTGCAGCTACAGAACTGGAG ATCGCAGGGGGACAGGACGATGCTGGTGATTGCCCACAGGCTGCACACGGTTCAGAATGC TGACCAAGTTCTGGTGCTCAAGCAGGGACGTCTGGTGGAGCATGACCAGCTCAGGGACGG CCAGGATGTCTACGCCCACCTGGTACAGCAGCGGCTGGAGGCATGAGGCCTCCAGACCCT GAGCCCCTCTCAGGACTGTGGCCAGGATCAGACCCACAGGGACCGTGCCGGAGGAGGCTA GGGTCAGGATAAAGATTGGGACCGTTTTGGACTTTGTGTGTTTTTGTGGCCTTGATGGGT GAGGGTTGGGGGAGTGGGTGGTTTGTGGTTCTAGAAACATTATTTTTTTGCTGAATATAA AAATAATAAATATATATAAAATGCTTTTCCTTAATGTATGTTATGGTTACTACTGGCTGA CATTTTAACAGCATCTAGAA gff2aplot-2.0.orig/examples/mhcregion/mhc2spc.rc0000664000000000000000000000010107667662611021625 0ustar rootroot00000000000000# # L # alignment::hide=off alignment::feature_color=lightorange gff2aplot-2.0.orig/examples/mhcregion/hs-mm.sgp1.gff0000664000000000000000000000733707667662611022340 0ustar rootroot00000000000000# Optimal Gene Structure. Score = 6291.332909 X87344 sgp pTerminal 916 1043 179.936 - 0 Gene1:1 X87344 sgp pInternal 1943 2084 229.084 - 1 Gene1:2 X87344 sgp pInternal 2314 2443 182.357 - 0 Gene1:3 X87344 sgp pInternal 3054 3185 183.061 - 2 Gene1:4 X87344 sgp pInternal 4244 4311 63.756 - 2 Gene1:5 X87344 sgp pFirst 6139 6219 48.505 - 0 Gene1:6 X87344 sgp pFirst 7952 8061 115.176 + 0 Gene2:1 X87344 sgp pInternal 8210 8340 89.011 + 1 Gene2:2 X87344 sgp pInternal 9300 9505 205.833 + 2 Gene2:3 X87344 sgp pInternal 9932 10129 257.453 + 0 Gene2:4 X87344 sgp pInternal 11331 11459 164.202 + 0 Gene2:5 X87344 sgp pInternal 11609 11797 234.303 + 0 Gene2:6 X87344 sgp pInternal 12357 12530 253.890 + 0 Gene2:7 X87344 sgp pInternal 12774 12936 217.266 + 0 Gene2:8 X87344 sgp pInternal 13245 13381 156.708 + 2 Gene2:9 X87344 sgp pInternal 14664 14840 177.780 + 0 Gene2:10 X87344 sgp pInternal 16423 16599 161.672 + 0 Gene2:11 X87344 sgp pInternal 17360 17507 208.778 + 0 Gene2:12 X87344 sgp pInternal 17666 17777 169.019 + 2 Gene2:13 X87344 sgp pInternal 18186 18315 209.211 + 1 Gene2:14 X87344 sgp pInternal 18714 18918 360.052 + 0 Gene2:15 X87344 sgp pInternal 22326 22709 457.502 + 2 Gene2:16 X87344 sgp pInternal 22799 22913 159.049 + 2 Gene2:17 X87344 sgp pInternal 24677 24807 185.047 + 1 Gene2:18 X87344 sgp pInternal 25091 25296 290.178 + 2 Gene2:19 X87344 sgp pInternal 27626 27823 287.777 + 0 Gene2:20 X87344 sgp pInternal 27989 28117 99.712 + 0 Gene2:21 X87344 sgp pInternal 29644 29832 261.542 + 0 Gene2:22 X87344 sgp pInternal 30010 30183 244.586 + 0 Gene2:23 X87344 sgp pInternal 30361 30520 183.582 + 0 Gene2:24 X87344 sgp pInternal 30914 31050 186.175 + 2 Gene2:25 X87344 sgp pInternal 31416 31502 69.126 + 0 Gene2:26 # Optimal Gene Structure. Score = 6198.106777 AF100956+AF027865 sgp pTerminal 856 983 179.919 - 0 Gene1:1 AF100956+AF027865 sgp pInternal 1721 1862 229.031 - 1 Gene1:2 AF100956+AF027865 sgp pInternal 2247 2376 181.750 - 0 Gene1:3 AF100956+AF027865 sgp pInternal 2914 3045 183.727 - 2 Gene1:4 AF100956+AF027865 sgp pInternal 4362 4429 63.531 - 2 Gene1:5 AF100956+AF027865 sgp pFirst 5861 5941 48.410 - 0 Gene1:6 AF100956+AF027865 sgp pFirst 7820 7929 115.608 + 0 Gene2:1 AF100956+AF027865 sgp pInternal 8067 8197 88.986 + 1 Gene2:2 AF100956+AF027865 sgp pInternal 9200 9405 205.259 + 2 Gene2:3 AF100956+AF027865 sgp pInternal 9966 10163 258.342 + 0 Gene2:4 AF100956+AF027865 sgp pInternal 11474 11602 164.302 + 0 Gene2:5 AF100956+AF027865 sgp pInternal 11765 11953 233.603 + 0 Gene2:6 AF100956+AF027865 sgp pInternal 12125 12298 254.438 + 0 Gene2:7 AF100956+AF027865 sgp pInternal 12521 12683 217.040 + 0 Gene2:8 AF100956+AF027865 sgp pInternal 13484 13620 156.425 + 2 Gene2:9 AF100956+AF027865 sgp pInternal 15208 15368 142.605 + 0 Gene2:10 AF100956+AF027865 sgp pInternal 16905 17184 107.281 + 1 Gene2:11 AF100956+AF027865 sgp pInternal 17872 18019 208.337 + 0 Gene2:12 AF100956+AF027865 sgp pInternal 18210 18321 167.711 + 2 Gene2:13 AF100956+AF027865 sgp pInternal 18774 18903 208.398 + 1 Gene2:14 AF100956+AF027865 sgp pInternal 19344 19548 359.983 + 0 Gene2:15 AF100956+AF027865 sgp pInternal 24037 24417 457.323 + 2 Gene2:16 AF100956+AF027865 sgp pInternal 24503 24617 159.374 + 2 Gene2:17 AF100956+AF027865 sgp pInternal 27387 27517 184.653 + 1 Gene2:18 AF100956+AF027865 sgp pInternal 27723 27928 290.462 + 2 Gene2:19 AF100956+AF027865 sgp pInternal 30503 30700 287.279 + 0 Gene2:20 AF100956+AF027865 sgp pInternal 30863 30991 99.060 + 0 Gene2:21 AF100956+AF027865 sgp pInternal 32648 32836 261.294 + 0 Gene2:22 AF100956+AF027865 sgp pInternal 32956 33129 244.399 + 0 Gene2:23 AF100956+AF027865 sgp pInternal 33279 33438 183.915 + 0 Gene2:24 AF100956+AF027865 sgp pInternal 33967 34103 186.175 + 2 Gene2:25 AF100956+AF027865 sgp pInternal 34547 34633 69.486 + 0 Gene2:26 gff2aplot-2.0.orig/examples/splice_sites/0000775000000000000000000000000007667662614020466 5ustar rootroot00000000000000gff2aplot-2.0.orig/examples/splice_sites/KCRB.mm.gff0000664000000000000000000000066507667662614022312 0ustar rootroot00000000000000MMCRKNB embl utr 1363 1439 1.0 + 0 MMCRKNB MMCRKNB embl utr 1696 1903 1.0 + 0 MMCRKNB MMCRKNB embl exon 1711 1903 1.0 + 0 MMCRKNB MMCRKNB embl exon 2090 2244 1.0 + 1 MMCRKNB MMCRKNB embl exon 2322 2454 1.0 + 2 MMCRKNB MMCRKNB embl exon 2624 2795 1.0 + 1 MMCRKNB MMCRKNB embl exon 3381 3504 1.0 + 0 MMCRKNB MMCRKNB embl exon 3652 3841 1.0 + 2 MMCRKNB MMCRKNB embl exon 3925 4103 1.0 + 2 MMCRKNB MMCRKNB embl utr 3925 4301 1.0 + 0 MMCRKNB gff2aplot-2.0.orig/examples/splice_sites/GT-AG_sm.rc0000664000000000000000000000003307667662613022305 0ustar rootroot00000000000000# L # color_merge_factor=2 gff2aplot-2.0.orig/examples/splice_sites/GT-AG.rc0000664000000000000000000000133407667662612021612 0ustar rootroot00000000000000# # L # # percent_box_label=SIMILARITY # percent_box_label_fontsize=10pt show_percent_box=on percent_box_score_range=0.0..1.0 major_tickmark_score=0.25 minor_tickmark_score=0.05 x_label=Homo sapiens x_label_font=helvetica-boldoblique y_label=Mus musculus y_label_font=helvetica-boldoblique ribbon_color_merge=on color_merge_factor=0.5 aplot_score_range=0..1 # # G # *::group_shape=arrow # # F # utr::feature_color=lightgrey exon::feature_color=darkorange exon::show_ribbons=on utr::show_ribbons=on exon::ribbon_style=both utr::ribbon_style=ribbons exon::ribbon_color=lightyellow utr::ribbon_color=palegrey # GT - Donors alignGT::alignment_color=darkred # AG - Acceptors alignAG::alignment_color=darkblue *::alignment_scale_color=on gff2aplot-2.0.orig/examples/splice_sites/KCRB.mm.gb0000664000000000000000000002036707667662614022141 0ustar rootroot00000000000000LOCUS MUSCRKNB 4521 bp DNA linear ROD 24-JUN-1993 DEFINITION Mouse creatine kinase B gene, complete cds. ACCESSION M74149 VERSION M74149.1 GI:192727 KEYWORDS creatine kinase B. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus. REFERENCE 1 (bases 1 to 4521) AUTHORS van Deursen,J., Schepens,J., Peters,W., Meijer,D., Grosveld,G., Hendriks,W. and Wieringa,B. TITLE Genetic variability of the murine creatine kinase B gene locus and related pseudogenes in different inbred strains of mice JOURNAL Genomics 12 (2), 340-349 (1992) MEDLINE 92155725 PUBMED 1740343 COMMENT Original source text: Mus musculus Liver DNA. FEATURES Location/Qualifiers source 1..4521 /organism="Mus musculus" /db_xref="taxon:10090" /tissue_type="Liver" repeat_region 140..155 CAAT_signal 1287..1290 TATA_signal 1304..1307 CAAT_signal 1317..1320 TATA_signal 1341..1344 mRNA join(1363..1439,1696..1903,2090..2244,2322..2454, 2624..2795,3381..3504,3652..3841,3925..4301) /product="creatine kinase" prim_transcript 1363..4301 /note="putative" /function="primary transcript of murine creatine kinase B gene" exon 1363..1439 exon 1696..1903 CDS join(1711..1903,2090..2244,2322..2454,2624..2795, 3381..3504,3652..3841,3925..4103) /codon_start=1 /product="creatine kinase" /protein_id="AAA37462.1" /db_xref="GI:192728" /translation="MPFSNSHNTQKLRFPAEDEFPDLSSHNNHMAKVLTPELYAELRA KCTPSGFTLDDAIQTGVDNPGHPYIMTVGAVAGDEESYDVFKDLFDPIIEERHGGYQP SDEHKTDLNPDNLQGGDDLDPNYVLSSRVRTGRSIRGFCLPPHCSRGERRAIEKLAVE ALSSLDGDLSGRYYALKSMTEAEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIW HNDNKTFLVWINEEDHLRVISMQKGGNMKEVFTRFCTGLTQIETLFKSKNYEFMWNPH LGYILTCPSNLGTGLRAGVHIKLPHLGKHEKFSEVLKRLRLQKRGTGGVDTAAVGGVF DVSNADRLGFSEVELVQMVVDGVKLLIEMEQRLEQGQAIDDLMPAQK" exon 2090..2244 exon 2322..2454 exon 2624..2795 exon 3381..3504 exon 3652..3841 exon 3925..4301 3'UTR 4104..4301 polyA_signal 4279..4284 repeat_region 4338..4365 BASE COUNT 875 a 1334 c 1334 g 978 t ORIGIN 1 ctgcagctgg acgtggtggc ccatgccttt aatcccagca cttcggaggc agaggcaggc 61 gaatttctga gttcgaggcc agcctggtct acagagtgag ttccaggaca gccagggcta 121 tacagagaaa ccctgtctta aacaaacaaa caaaccaaaa aagaaaaaaa gaaagggtgt 181 gccgccacgc aggacctcac ctctctattt gtatcaactg caccatctac cacacttttc 241 tacccacgac cattccctaa tgagcatcag atcgaatcca aactttctcc ctctacacgt 301 ttcctgatct gtttgtagag aagggacacc gtctttctgt aggctgcatt ccatgaagtg 361 ggaatgctag gtcatagagc aatttaaaaa ttttttaaca aatactgcca aattactttc 421 cagaaaaaga tgaagctgct ggcagctgca gcaggcaagg tgcgaacgcc tatcttcaca 481 cattccaatt cacacctggc actggctgtg gtcaaattcc aggtttcccc tgtgtgtgtg 541 tgtggggggg ggggtggcac ggggagagag actgtttcaa tgtgttggat ctgattaatg 601 agcttaattt tgactggtgc ttcctccacc cccagtttgc ctgccggtgt tggggagttc 661 tttgtgggtg cggtggtaga aaccggtccc ccgagaaaag ggacaggaga tgagaatttg 721 gagattcaaa aacagtctct aggaactaaa tgtcttgaat ctttcagggt ctgggtccaa 781 gggtcttggc ggtgttcctt agagcccgcc caaggtcaga acaccctggg tgcttccggg 841 caggacctca gccagactgc gcctctggtg ttgcaccaag aacacccagg agatgcccgc 901 aggcaccttg aggaaggtcg gcggctctgt ggctcttgag gatatggcct ggatgcggtg 961 tttggatgct gtacccaatg ttaaaaacct ggactctcac catgaccctc tctacaacgc 1021 agtcggcctg aggagacagg gaaggcagga gcctcaagtg ccatctggct tcccagactc 1081 agtttcctgc ccccaggcag tgtgtgtgaa gcaggtctag gatatctatg gctctggggt 1141 ttcgtcttag ggatcctgtg cgagcaccac cggggtggcc aaactgcgca gcggggtcga 1201 gacttgggga ccgctagggt gggccgctgg gggtgtcaag ggctgctgcc tcggacaaag 1261 cggcggcacc accccaaagc gcggaccaat ggaatgaatg ggctataaat agccgccaat 1321 gggaggccgc gacgcgcccc ttaagagctc agggagcagc gagcagccgt cgttcttctg 1381 cgctgcgcca ggagctgcaa gcacaggcat ccatcgcccc tgcttcgtcc ggcatcccgg 1441 tgagcgggtc caagggccag gggtatagtc ctgcggggct ctacgctgtg gggtgcggga 1501 ccggggcatc acgccgagcc tcgctgccgg gagcgctcat cggacccgcc cgggaacttg 1561 ggatgcgctg gactctgacg atgcagacct cgctgacctt ggtggcgtcc agggaaagtc 1621 tcgggggtcc caagtggttt gcaggtccct ggcggccggt gtttaaatct cctctgaccc 1681 cgctcttccc tgcagcccgc tgccgccgcc atgcccttct ccaacagcca taatacgcag 1741 aagctgcgct tcccggccga ggatgagttc cctgatctga gcagccacaa caaccatatg 1801 gccaaggtgc tgaccccgga gctgtacgcc gagctccgtg ccaagtgcac gccgagcggc 1861 tttactttgg acgacgccat tcagactggc gtagacaatc cgggtatgca cacccctgta 1921 gcgtcaggct tccgcctccc caagaagccc cccgggcaag gatcccactg ctcttccctg 1981 aaccttcggt gggctggggt cccctgttcc cctctccgcg cttagcctta agagcctcgg 2041 cttgctcctg cctgacggtg acgtcactgt cgccgcgccc ctcctccagg ccacccgtac 2101 atcatgactg tgggtgcagt ggcgggcgac gaggagagtt acgacgtatt caaggacctc 2161 ttcgacccca ttattgagga gcggcacggc ggctaccagc ccagtgatga gcacaagacc 2221 gacctcaacc cagacaacct gcaggtgcgg ggaatcaggg tccgggcgtg ctggggagag 2281 gggtctcggc gctcactctg gccaccacct tgtattccca gggtggcgat gacctggacc 2341 ccaactacgt gctgagctcg cgagtgcgca caggccgcag catccgcggc ttctgtctcc 2401 ccccgcactg cagccgcggg gagcgccgcg ccatcgagaa gctggcagta gaaggtaggg 2461 gtcgggtaac agccgccaga gctgctgcgc tcttctctgc gcgcgcgttc ccactgggga 2521 ctgaggtcga agacccacct tcgcccgcgg ggacacactg ctgcaggcgg ggcggcgggc 2581 ttgctcgccc gcccaccctg tccttgaact ctgcactccg cagctctgtc cagcctagat 2641 ggcgacctgt ctggcaggta ctacgcgctc aagagcatga ctgaggcgga gcagcagcag 2701 ctcattgacg accacttcct cttcgataag cctgtgtcgc ctctgctgct ggcctccggc 2761 atggcccgcg actggccgga tgctcgtggc atatggtacg agccctctcc ccccccagtc 2821 cccagaaggt ggggcctgcc ctgaattcct agtttgtgca gtgcctccct ccgcccaggt 2881 gaccttggtt ctgccgatga ctgtggtcct tgcgctgcgg gaggccgcag tctccaggga 2941 ctcaagggtg gtgaccagtc tctttggcgt ctgttctccg ccctcctcct gggagccggc 3001 gcttcttgtt ttctctccac cttctcaccc ccttattccg ccgggatcgt gccaggtgcc 3061 aatgacgcaa aagcctccgc accgtccggg cagggctcct acccctgcag actgagcggg 3121 cggaggcgtg cttcctctag tgggatgctc tggaggctcc agacccttgc gggccacaca 3181 gcacatgact ggtgattgag atgtatatga gctgccttcc tccactgttg ctgggattgg 3241 cgtcttggtg acagctcaca ttccagcact ttgttgagga agcattttgt ttgaggtcac 3301 ccacctatag tgtctttctt gggtgtgatc taaggccaca ttctggcagg gactccagcc 3361 tgactttacc cctcttctag gcacaatgac aataagactt tcctggtgtg gattaacgag 3421 gaggaccacc tgcgagtcat ctccatgcag aaggggggca acatgaagga agtgttcacc 3481 cgattctgca ccggcctcac tcaggtcagg cctgggcatt ccccagggct tcctcactag 3541 gggcgttggt gctggggagg gatcaggggc agatcagagc ccacatctcc cagggtccgt 3601 agggcttccg gccaggcttc cttctcttaa ctctcccttc tccaccttca gatcgaaact 3661 ctcttcaagt ccaagaacta tgagttcatg tggaatcctc acctgggcta catcctcaca 3721 tgcccatcca acctgggcac cggactgcgg gcaggtgtac acatcaagct gccccacctg 3781 gggaagcacg agaagttctc ggaggtgctc aagcggctgc ggcttcagaa gcgaggcaca 3841 ggtgaggggc agaaggcaca ggtgaggggc agaaggtgca ggtgttgtcc tcagccccgc 3901 tgacctgccc atgtcccacc gcaggtggcg tggacaccgc tgctgtcggt ggggtgtttg 3961 atgtctccaa cgctgaccgc ctgggcttct cggaggtgga actggtgcag atggtggtgg 4021 acggagtgaa actactcatt gagatggagc aacggctcga gcagggtcag gcaatcgatg 4081 acctcatgcc ggcccagaag tgaagcctgg ccctcgccac catcaggctg ccgcttccta 4141 acttattacc cgggcagtgc ccgccatgca tccttgatgt ttgccgcctg gcgctgagcc 4201 cttagcctcg ctgtagagac ttctgtcgcc ctgggtagag tttatttttt tgatggctaa 4261 gctgttgctg acactgaaaa taaactaggg tttggcctgc cctatgtccg agtgttgctt 4321 ctcctttcct agagacagtg tgtgtgtgtg tgtgtgtatg tgtgtgcgcg agctggcctt 4381 ctgtgtcatc tcacctagca gatgaaacat gagccataga agatacaggg cagagaggga 4441 gggaggctct gagtccagcc ttgagcatct aaggacatct gtgcttgcag ggtggagcct 4501 tagtgtttcc ttagtcccag c // gff2aplot-2.0.orig/examples/splice_sites/KCRB.AG.hs.gff0000664000000000000000000000044607667662613022575 0ustar rootroot00000000000000HSCKBG embl exon 1148 1340 1.0 + 0 HSCKBG HSCKBG embl exon 1464 1618 1.0 + 0 HSCKBG HSCKBG embl exon 1691 1823 1.0 + 1 HSCKBG HSCKBG embl exon 2208 2379 1.0 + 0 HSCKBG HSCKBG embl exon 3050 3173 1.0 + 2 HSCKBG HSCKBG embl exon 3331 3520 1.0 + 1 HSCKBG HSCKBG embl exon 3600 3778 1.0 + 1 HSCKBG gff2aplot-2.0.orig/examples/splice_sites/KCRB.GT.hs.gff0000664000000000000000000000044607667662613022620 0ustar rootroot00000000000000HSCKBG embl exon 1148 1340 1.0 + 0 HSCKBG HSCKBG embl exon 1464 1618 1.0 + 0 HSCKBG HSCKBG embl exon 1691 1823 1.0 + 1 HSCKBG HSCKBG embl exon 2208 2379 1.0 + 0 HSCKBG HSCKBG embl exon 3050 3173 1.0 + 2 HSCKBG HSCKBG embl exon 3331 3520 1.0 + 1 HSCKBG HSCKBG embl exon 3600 3778 1.0 + 1 HSCKBG gff2aplot-2.0.orig/examples/splice_sites/KCRB.hs_utr.gff0000664000000000000000000000017007667662614023174 0ustar rootroot00000000000000HSCKBG embl utr 808 875 1.0 + 0 HSCKBG HSCKBG embl utr 1136 1340 1.0 + 0 HSCKBG HSCKBG embl utr 3600 4075 1.0 + 0 HSCKBGgff2aplot-2.0.orig/examples/splice_sites/KCRB.hs.gb0000664000000000000000000002174007667662614022136 0ustar rootroot00000000000000LOCUS HSCKBG 4200 bp DNA linear PRI 24-APR-1993 DEFINITION Human gene for creatine kinase B (EC 2.7.3.2). ACCESSION X15334 VERSION X15334.1 GI:29962 KEYWORDS creatine kinase; creatine kinase B. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4200) AUTHORS Mariman,E.C., Schepens,J.T. and Wieringa,B. TITLE Complete nucleotide sequence of the human creatine kinase B gene JOURNAL Nucleic Acids Res. 17 (15), 6385 (1989) MEDLINE 89366665 PUBMED 2771648 REFERENCE 2 (bases 1 to 4200) AUTHORS Mariman,E. and Wieringa,B. TITLE Expression of the gene encoding human brain creatine kinase depends on sequences immediately following the transcription start point JOURNAL Gene 102 (2), 205-212 (1991) MEDLINE 91340154 PUBMED 1840537 REFERENCE 3 (bases 1 to 4200) AUTHORS Mariman,E.C.M. TITLE Direct Submission JOURNAL Submitted (23-MAY-1989) Mariman E.C.M., University of Nijmegen, Dept of Human Genetics, Geert Grooteplein Z18, 6525 GA Nijmegen, Netherlands COMMENT The sequence overlaps with that reported by Mariman et. al. in Genomics 1:126-137(1987)J03036 and by Daouk et. al. in J. Biol. Chem. 263:2442-2446(1988)J03531. Data kindly reviewed (13-NOV-1989) by Mariman E.C.M. FEATURES Location/Qualifiers source 1..4200 /organism="Homo sapiens" /db_xref="taxon:9606" /map="chromosome 14q32.3" /clone="CK3-1" /tissue_type="brain" /clone_lib="EMBL3" CAAT_signal 724..728 TATA_signal 742..749 CAAT_signal 754..758 mRNA join(808..875,1136..1340,1464..1618,1691..1823,2208..2379, 3050..3173,3331..3520,3600..4075) exon 808..875 /number=1 intron 876..1135 /number=1 exon 1136..1340 /number=2 CDS join(1148..1340,1464..1618,1691..1823,2208..2379, 3050..3173,3331..3520,3600..3778) /EC_number="2.7.3.2" /codon_start=1 /product="creatine kinase B" /protein_id="CAA33389.1" /db_xref="GI:29963" /db_xref="SWISS-PROT:P12277" /translation="MPFSNSHNALKLRFPAEDEFPDLSAHNNHMAKVLTPELYAELRA KSTPSGFTLDDVIQTGVDNPGHPYIMTVGCVAGDEESYEVFKDLFDPIIEDRHGGYKP SDEHKTDLNPDNLQGGDDLDPNYVLSSRVRTGRSIRGFCLPPHCSRGERRAIEKLAVE ALSSLDGDLAGRYYALKSMTEAEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIW HNDNKTFLVWVNEEDHLRVISMQKGGNMKEVFTRFCTGLTQIETLFKSKDYEFMWNPH LGYILTCPSNLGTGLRAGVHIKLPNLGKHEKFSEVLKRLRLQKRGTGGVDTAAVGGVF DVSNADRLGFSEVELVQMVVDGVKLLIEMEQRLEQGQAIDDLMPAQK" intron 1341..1463 /number=2 exon 1464..1618 /number=3 intron 1619..1690 /number=3 exon 1691..1823 /number=4 intron 1824..2207 /number=4 exon 2208..2379 /number=5 intron 2380..3049 /number=5 exon 3050..3173 /number=6 intron 3174..3330 /number=6 exon 3331..3520 /number=7 intron 3521..3599 /number=7 exon 3600..4075 /number=8 polyA_signal 3952..3957 BASE COUNT 586 a 1443 c 1477 g 694 t ORIGIN 1 gatcagtttt tttttttaat cgcacttatg cttattgttt attagcgttt cctcccatct 61 ttgcctgaag tctccgggga ctgcctttgg gggtcgggta aacttgtccc ctgcgaagag 121 ggcccagggt tggggtctgg aaactccgag gctgcacttg ccagcggcct cttaaggcca 181 cagcgtcccc gtggtttctg gctcgcagcc ccccgagacc caggacttgt ccaaggtcag 241 ggcaccgcgg gtgcccccgg gctgggccgc agcagactgc gcttcccgcg cgccttcgct 301 ttgcaccagg atcgcccagg aaatgcctgc gggcaccttg aggaaggtcg gcggctccgg 361 gccagctcgc actggccggg gtggggcggg ggccgtacct gctgcggaag ccccgaaagc 421 tttcgcccgg cccctcgccg ccgccgcggg ggctggctgg actaggcggg caggctcgag 481 gatgcggatg aacccaagcg tcctcgagtg cccggaggct ctccgcctca gtttcccgcc 541 cagaggcaag ggcgtgcgag gggatccaga tatccaagga cctgaggttt cggcctcgag 601 gtcttgggcg ggggactggg caggctgcgc ggggtcccag cgaggggaca gctcgggtgg 661 gcggccaggg tgttgggggc tgcgggcggc ggacaaagcg gcggcaccac cccgcggcgc 721 gggccaatgg aatgaatggg ctataaatag ccgccaatgg gcggcccgcg ttgtgcccct 781 taagagccgc gggagcgcgg agcggccgct gttcgcctgc gtcgctccgg gagctgccga 841 cggacggagc gcccccgccc ccgcccggcc gcccggtgag tgggcccggg ggccgggggc 901 gtccgcgccc gggctagggg cgctgcgagc aaagggggcg cgtcgcctgg agcgcgcgcc 961 ggaccggccg ggggtccccg gcgatgatgg cgctccccgc gcgcgctgcg gaccccgctg 1021 accttggccg cgtcccgggg ggcgccgggg ggcccggcgg cgggggcctg agtggtacgc 1081 gggagcccgg gaaccccggc gtgccggtcc cctctgaccc cgcgtctccc cgcagcccgc 1141 cgccgccatg cccttctcca acagccacaa cgcactgaag ctgcgcttcc cggccgagga 1201 cgagttcccc gacctgagcg cccacaacaa ccacatggcc aaggtgctga cccccgagct 1261 gtacgcggag ctgcgcgcca agagcacgcc gagcggcttc acgctggacg acgtcatcca 1321 gacaggcgtg gacaacccgg gtacgcgacc cctcggggcc ggggtcccgg ccccccctcc 1381 ccccgcgcag ccgcagggtc ctcagcagcg cgctcgggcc cggcagtgac gtcactgtcc 1441 ccgtcccgcg ccccctcccc caggccaccc gtacatcatg accgtgggct gcgtggcggg 1501 cgacgaggag tcctacgaag tgttcaagga tctcttcgac cccatcatcg aggaccggca 1561 cggcggctac aagcccagcg atgagcacaa gaccgacctc aaccccgaca acctgcaggt 1621 gcggggctgc gggcgggccg ggcgggcggg gccggggtct tcgggcgctc actcccgtct 1681 cgcctcccag ggcggcgacg acctggaccc caactacgtg ctgagctcgc gggtgcgcac 1741 gggccgcagc atccgtggct tctgcctccc cccgcactgc agccgcgggg agcgccgagc 1801 catcgagaag ctcgcggtgg aaggtagggg ccgggcgggc cgaggggcgg cggcggccgc 1861 gtccccctcc cggcgcggtc cccgcccgct tttgtttacg tcgcccggga gcggcagccg 1921 ccgtcgcgct cttatctgcg cgcgcccggg ttcagtttcc cggacccacc gagggacgga 1981 ggcccagccc ccgcgcccac agcggcctgg ggcccaggga gggcgggtcc tggcgcgggg 2041 tcaccgcctg ggaccgtcgc ccgggccgtg aggactggac gcccgcagat ccgggcgggt 2101 ggggccctct gacgtccccc gaggtggggc acgggggcgg gcgggtccgc gctgcgggct 2161 ggaggggcgg gcgcgggagc ccagcgtcct gagcgcaccc ctcgcagccc tgtccagcct 2221 ggacggcgac ctggcgggcc gatactacgc gctcaagagc atgacggagg cggagcagca 2281 gcagctcatc gacgaccact tcctcttcga caagcccgtg tcgcccctgc tgctggcctc 2341 gggcatggcc cgcgactggc ccgacgcccg cggtatctgg tgcgtgtccc tctgcgccct 2401 ctcgcggcgt cctccctccc cgctacctcc gctttccctc tcgcccccct cgcgggggtg 2461 gggcccctcg cggcgaggag gaggaggagg aggagggagg ggccggccgc gctccgggtc 2521 tgggttccgt gccgcgcctc ctcctgcgcc ggtgaccttg gccgagcagg tgcgttaagg 2581 gactgggccc cggcccgtgg gggctcagga ctcagcaaca cctccccacc ccgagacgtg 2641 aggtgggggc ggggctctct ggcgcctctc cccgacggcc ctgggagctg gagctctttg 2701 ttttcttttc tcactcctcc gccgctggga ttctaccagg ggctggtgac gccaaagctt 2761 ctccaggggc agggctccta cccccactgt ggggggcggg tcgggctgtc ctggcggtcc 2821 ctggccccgc cccacctcgg gccacagcgc atgatggcag ctggggttct cctgctgtga 2881 ggcgtcccgg ttcccccgcc cgccccgtgt tggcgggtgg agtcttggca gcagcctcca 2941 ctcctgggca tggcagggag cagcacctca gggacttggg aagttccttt ggtctggggg 3001 cggcctgggg cttttttctg ggtatgccct gagaccagcc ctcccgcagg cacaatgaca 3061 ataagacctt cctggtgtgg gtcaacgagg aggaccacct gcgggtcatc tccatgcaga 3121 aggggggcaa catgaaggag gtgttcaccc gcttctgcac cggcctcacc caggtgccag 3181 ggacggggca ggcccagacc ccagggcccc agcagggatg tgggtgcccc agcatcagtc 3241 cccccggggg atttccggca ctggggagtc tcagggcctg taggggtttc aggcaggcct 3301 tctccctcat accctcttct ccgtctgcag attgaaactc tcttcaagtc taaggactat 3361 gagttcatgt ggaaccctca cctgggctac atcctcacct gcccatccaa cctgggcacc 3421 gggctgcggg caggtgtgca tatcaagctg cccaacctgg gcaagcatga gaagttctcg 3481 gaggtgctta agcggctgcg acttcagaag cgaggcacag gtgagcaggg caggtgctgc 3541 ggcttcccgt ggcctttggg cagccctgtt tcctccgccc tgacttgctg tctccccagg 3601 cggtgtggac acggctgcgg tgggcggggt cttcgacgtc tccaacgctg accgcctggg 3661 cttctcagag gtggagctgg tgcagatggt ggtggacgga gtgaagctgc tcatcgagat 3721 ggaacagcgg ctggagcagg gccaggccat cgacgacctc atgcctgccc agaaatgaag 3781 cccggcccac acccgacacc agccctgctg cttcctaact tattgcctgg gcagtgccca 3841 ccatgcaccc ctgatgttcg ccgtctggcg agcccttagc cttgctgtag agacttccgt 3901 cacccttggt agagtttatt tttttgatgg ctaagatact gctgatgctg aaataaacta 3961 gggttttggc ctgcctgcgt ctgagtggtg cctctccttt cccagggggg agggggaagg 4021 gcagcagcca ggccccagga gtcttgagtc ctgggcctgc tgtgggcctc gccttctgtg 4081 agatgggaca agagccagga ggtggccact ctgttctgcc tgccctacct agtccatggg 4141 ccccttccct cgtgtctatc gggctgtgca ggcaggaaca tgggagagag cgagggagga // gff2aplot-2.0.orig/examples/splice_sites/README0000664000000000000000000001246307667662612021352 0ustar rootroot00000000000000################################################## # # README splice_sites # # This README runs as a shell script. # Here you can find the commands # we used to produce all the figures for: # # "" # # USAGE: bash README > .log 2>&1 # # $Id: README,v 1.2 2003/03/04 19:06:09 jabril Exp $ # ################################################## # SECONDS=0 ; # # # Original Files # # KCRB.AG.hs.gff KCRB.AG.mm.gff KCRB.AG.hs-mm.gff_tmp # KCRB.GT.hs.gff KCRB.GT.mm.gff KCRB.GT.hs-mm.gff # # Fixing GFF input files # # gawk '{$6=sprintf("%.2f",$6); # $9=$6; # print $0}' KCRB.AG.hs-mm.gff_tmp > KCRB.AG.hs-mm.gff # cp KCRB.AG.hs.gff KCRB.hs.gff~ # cp KCRB.AG.mm.gff KCRB.mm.gff~ # # sort +3n -4 KCRB.hs.gff~ KCRB.hs_utr.gff > KCRB.hs.gff # sort +3n -4 KCRB.mm.gff~ KCRB.mm_utr.gff > KCRB.mm.gff # echo "# Getting the PostScripts with GFF2APLOT" ; # echo "# -> GT - DONORS" ; # GT - DONORS $BIN/gff2aplot.pl -v -t "DONOR SITES" \ -- KCRB.hs.gff \ KCRB.mm.gff \ KCRB.GT.hs-mm.gff \ > KCRB.GT.hs-mm.ps \ 2> KCRB.GT.hs-mm.log; # echo "# -> AG - ACCEPTORS" ; # AG - ACCEPTORS $BIN/gff2aplot.pl -v -t "ACCEPTOR SITES" \ -- KCRB.hs.gff \ KCRB.mm.gff \ KCRB.AG.hs-mm.gff \ > KCRB.AG.hs-mm.ps \ 2> KCRB.AG.hs-mm.log; # echo "# -> GT + AG" ; # GT + AG $BIN/gff2aplot.pl -v -t "DONOR + ACCEPTOR SITES" \ -- KCRB.hs.gff \ KCRB.mm.gff \ KCRB.GT.hs-mm.gff \ KCRB.AG.hs-mm.gff \ > KCRB.GT-AG.hs-mm.ps \ 2> KCRB.GT-AG.hs-mm.log; # Extra customization cat > GT-AG.rc <<'+++EOF+++' # # L # # percent_box_label=SIMILARITY # percent_box_label_fontsize=10pt show_percent_box=on percent_box_score_range=0.0..1.0 major_tickmark_score=0.25 minor_tickmark_score=0.05 x_label=Homo sapiens x_label_font=helvetica-boldoblique y_label=Mus musculus y_label_font=helvetica-boldoblique ribbon_color_merge=on color_merge_factor=0.5 aplot_score_range=0..1 # # G # *::group_shape=arrow # # F # utr::feature_color=lightgrey exon::feature_color=darkorange exon::show_ribbons=on utr::show_ribbons=on exon::ribbon_style=both utr::ribbon_style=ribbons exon::ribbon_color=lightyellow utr::ribbon_color=palegrey # GT - Donors alignGT::alignment_color=darkred # AG - Acceptors alignAG::alignment_color=darkblue *::alignment_scale_color=on +++EOF+++ # echo "# -> GT + AG ... CUSTOMIZED" ; # GT + AG $BIN/gff2aplot.pl -v -t "DONOR + ACCEPTOR SITES (Color Version)" \ --x-sequence-coords 0..4200 \ --y-sequence-coords 0..4600 \ --custom-filename GT-AG.rc \ -- KCRB.hs.gff \ KCRB.mm.gff \ KCRB.GT.hs-mm.gff \ KCRB.AG.hs-mm.gff \ > KCRB.GT-AG.hs-mm.color.ps \ 2> KCRB.GT-AG.hs-mm.color.log; # Extra customization cat > GT-AG_sm.rc <<'+++EOF+++' # L # color_merge_factor=1 +++EOF+++ # echo "# -> GT + AG ... MORE CUSTOMIZED" ; # GT + AG $BIN/gff2aplot.pl -v -t "DONOR + ACCEPTOR SITES (Color Version)" \ --x-sequence-coords 0..4200 \ --y-sequence-coords 0..4600 \ --custom-filename GT-AG.rc \ --custom-filename GT-AG_sm.rc \ -- KCRB.hs.gff \ KCRB.mm.gff \ KCRB.GT.hs-mm.gff \ KCRB.AG.hs-mm.gff \ > KCRB.GT-AG.hs-mm.color_small.ps \ 2> KCRB.GT-AG.hs-mm.color_small.log; # # Preparing web images # filenames () { cat << 'EOF'; EOF }; # # echo "# Using \"ghostscript\" to obtain JPEG images from PS files" ; echo "# Using \"ghostscript\" to obtain PNG images from PS files" ; # GS=`which gs || echo "gs"`; MG=`which mogrify || echo "mogrify"`; CV=`which convert || echo "convert"`; # filenames | while read n ; do { echo "# -> $n" ; $GS -dBATCH -dNOPAUSE -r300 \ -sPAPERSIZE=a4 -sDEVICE=png16m \ -sOutputFile=$n.png $n.ps ; cp -v $n.png $n.s.png ; # mogrify is a ImageMagick tool that allow us to transform images on batch, # large high-resolution jpeg files are scaled down to thumbnail resolution (2479x3508=>123x175) # it overwrites original file (so that we previously get a renamed copy for each jpeg to process). $MG -verbose -geometry 5% $n.s.png ; # # $GS -dBATCH -dNOPAUSE -r300 \ # -sPAPERSIZE=a4 -sDEVICE=jpeg \ # -sOutputFile=$n.jpg $n.ps ; # png large version is pretty smaller than jpeg # cp -v $n.jpg $n.s.jpg ; # $MG -verbose -geometry 5% $n.s.jpg ; }; done ; $CV 'vid:*.s.png' splicesites.summary.png # echo "# Using \"ghostscript\" to obtain PDF documents from PS files" ; # filenames | while read n ; do { echo "# -> $n" ; $GS -dBATCH -dNOPAUSE -r300 \ -sPAPERSIZE=a4 -sDEVICE=pdfwrite \ -sOutputFile=$n.pdf $n.ps ; }; done ; # # # echo "# LaTeXing all figures together..." ; # # latex splicesites.tex; # dvips splicesites.dvi -o splicesites.ps; # # echo "###" ; echo "### TOTAL TIME: $SECONDS seconds..." ; # # # That's all folks... ;^D # # >> Copyleft (C) 2002/2003 - Josep F. Abril << # gff2aplot-2.0.orig/examples/splice_sites/KCRB.GT.hs-mm.gff0000664000000000000000000070741107667662613023235 0ustar rootroot00000000000000HSCKBG:MMCRKNB ssitesim alignGT 90:13 98:21 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:174 98:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:355 98:363 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:508 98:516 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:537 98:545 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:539 98:547 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 90:551 98:559 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 90:665 98:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 90:670 98:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:673 98:681 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:766 98:774 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 90:812 98:820 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:914 98:922 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 90:1112 98:1120 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:1172 98:1180 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 90:1216 98:1224 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 90:1460 98:1468 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 90:1485 98:1493 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 90:1490 98:1498 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 90:1599 98:1607 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:1634 98:1642 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:1901 98:1909 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:1920 98:1928 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 90:1986 98:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:2111 98:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:2242 98:2250 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:2257 98:2265 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 90:2320 98:2328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 90:2452 98:2460 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 90:2458 98:2466 1 + 0 1 HSCKBG:MMCRKNB ssitesim alignGT 90:2523 98:2531 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 90:2826 98:2834 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 90:2945 98:2953 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 90:3293 98:3301 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:3320 98:3328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:3403 98:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:3502 98:3510 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 90:3592 98:3600 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 90:3596 98:3604 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:3839 98:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:3859 98:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:3922 98:3930 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:3946 98:3954 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 90:3951 98:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:3993 98:4001 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:4011 98:4019 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:4014 98:4022 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 90:4063 98:4071 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 90:4232 98:4240 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 90:4287 98:4295 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 90:4489 98:4497 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 95:174 103:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 95:508 103:516 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 95:673 103:681 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 95:1103 103:1111 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 95:1112 103:1120 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 95:1172 103:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 95:1216 103:1224 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 95:1437 103:1445 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 95:1460 103:1468 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 95:1842 103:1850 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 95:1901 103:1909 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 95:2111 103:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 95:2361 103:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 95:2463 103:2471 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 95:2655 103:2663 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 95:2876 103:2884 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 95:2948 103:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 95:3189 103:3197 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 95:3293 103:3301 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 95:3322 103:3330 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 95:3502 103:3510 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 95:3752 103:3760 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 95:3839 103:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 95:3859 103:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 95:4002 103:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 95:4014 103:4022 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 95:4023 103:4031 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 95:4063 103:4071 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 95:4232 103:4240 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 95:4489 103:4497 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:93 134:101 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:174 134:182 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 126:457 134:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:537 134:545 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:539 134:547 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 126:551 134:559 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:665 134:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 126:766 134:774 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 126:812 134:820 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:914 134:922 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 126:1099 134:1107 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:1172 134:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:1216 134:1224 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 126:1460 134:1468 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:1485 134:1493 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:1490 134:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 126:1599 134:1607 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:1634 134:1642 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:1804 134:1812 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:1901 134:1909 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:1920 134:1928 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 126:1986 134:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:2055 134:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:2107 134:2115 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:2111 134:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:2242 134:2250 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:2257 134:2265 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 126:2320 134:2328 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 126:2452 134:2460 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 126:2458 134:2466 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 126:2793 134:2801 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:2826 134:2834 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 126:2945 134:2953 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 126:3320 134:3328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:3403 134:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:3502 134:3510 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:3592 134:3600 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 126:3596 134:3604 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:3839 134:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:3859 134:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:3873 134:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:3922 134:3930 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:3946 134:3954 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 126:4011 134:4019 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 126:4063 134:4071 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 126:4232 134:4240 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 126:4287 134:4295 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 126:4337 134:4345 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 126:4489 134:4497 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 132:174 140:182 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 132:508 140:516 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:531 140:539 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:533 140:541 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:535 140:543 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:537 140:545 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 132:539 140:547 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:551 140:559 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:644 140:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:665 140:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 132:766 140:774 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 132:789 140:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:812 140:820 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:865 140:873 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:914 140:922 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:955 140:963 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:1097 140:1105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:1099 140:1107 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:1101 140:1109 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:1112 140:1120 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 132:1172 140:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:1216 140:1224 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:1460 140:1468 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 132:1485 140:1493 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:1490 140:1498 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 132:1634 140:1642 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 132:1901 140:1909 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 132:1920 140:1928 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 132:2111 140:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:2242 140:2250 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:2257 140:2265 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 132:2320 140:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:2452 140:2460 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:2458 140:2466 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 132:2523 140:2531 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:2826 140:2834 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:2945 140:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:3293 140:3301 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:3320 140:3328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 132:3403 140:3411 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 132:3502 140:3510 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 132:3592 140:3600 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 132:3839 140:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:3859 140:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:3879 140:3887 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:3946 140:3954 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:3951 140:3959 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 132:4063 140:4071 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 132:4232 140:4240 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:4287 140:4295 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 132:4337 140:4345 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:4339 140:4347 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:4341 140:4349 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:4343 140:4351 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:4345 140:4353 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:4347 140:4355 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:4349 140:4357 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:4353 140:4361 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:4359 140:4367 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 132:4489 140:4497 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 233:93 241:101 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 233:174 241:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 233:368 241:376 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 233:457 241:465 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 233:508 241:516 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 233:579 241:587 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 233:665 241:673 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 233:766 241:774 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 233:812 241:820 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 233:914 241:922 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 233:1112 241:1120 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 233:1216 241:1224 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 233:1437 241:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 233:1490 241:1498 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 233:1642 241:1650 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 233:1804 241:1812 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 233:1920 241:1928 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 233:2055 241:2063 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 233:2242 241:2250 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 233:2257 241:2265 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 233:2320 241:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 233:2452 241:2460 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 233:2458 241:2466 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 233:2523 241:2531 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 233:2793 241:2801 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 233:2826 241:2834 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 233:2876 241:2884 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 233:2945 241:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 233:3293 241:3301 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 233:3403 241:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 233:3502 241:3510 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 233:3592 241:3600 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 233:3839 241:3847 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 233:3859 241:3867 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 233:3873 241:3881 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 233:3879 241:3887 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 233:3922 241:3930 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 233:3946 241:3954 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 233:4011 241:4019 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 233:4063 241:4071 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 233:4097 241:4105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 233:4287 241:4295 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 233:4489 241:4497 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:13 256:21 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:174 256:182 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:457 256:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:551 256:559 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:614 256:622 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:644 256:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:665 256:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:789 256:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:827 256:835 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:865 256:873 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:1055 256:1063 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:1155 256:1163 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:1172 256:1180 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 248:1216 256:1224 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:1437 256:1445 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:1490 256:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:1599 256:1607 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:1642 256:1650 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:1656 256:1664 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:1804 256:1812 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:1842 256:1850 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:1901 256:1909 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:1986 256:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:2055 256:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:2111 256:2119 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:2242 256:2250 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:2257 256:2265 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:2320 256:2328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:2361 256:2369 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 248:2463 256:2471 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:2655 256:2663 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:2876 256:2884 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 248:2945 256:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:2948 256:2956 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:3053 256:3061 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 248:3189 256:3197 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:3245 256:3253 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:3293 256:3301 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:3320 256:3328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:3322 256:3330 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:3403 256:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:3546 256:3554 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:3592 256:3600 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:3752 256:3760 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:3802 256:3810 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:3839 256:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:3859 256:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:3873 256:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:3879 256:3887 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:3922 256:3930 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:3951 256:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:4002 256:4010 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:4014 256:4022 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:4359 256:4367 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 248:4361 256:4369 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 248:4489 256:4497 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:13 352:21 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:174 352:182 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 344:336 352:344 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:355 352:363 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:368 352:376 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:457 352:465 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 344:766 352:774 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 344:812 352:820 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 344:914 352:922 1 + 0 1 HSCKBG:MMCRKNB ssitesim alignGT 344:1112 352:1120 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:1172 352:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:1216 352:1224 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 344:1437 352:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:1634 352:1642 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:1642 352:1650 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:1804 352:1812 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:1901 352:1909 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:1920 352:1928 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:1986 352:1994 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 344:2107 352:2115 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:2242 352:2250 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:2257 352:2265 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 344:2320 352:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:2452 352:2460 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 344:2458 352:2466 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 344:2523 352:2531 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 344:2793 352:2801 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:2826 352:2834 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 344:2876 352:2884 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:2945 352:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:3293 352:3301 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 344:3502 352:3510 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 344:3592 352:3600 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 344:3752 352:3760 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:3802 352:3810 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:3839 352:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:3859 352:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:3873 352:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:3922 352:3930 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:3946 352:3954 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:3993 352:4001 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:4011 352:4019 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:4014 352:4022 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:4063 352:4071 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 344:4287 352:4295 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 344:4489 352:4497 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:13 386:21 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:93 386:101 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:174 386:182 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:355 386:363 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:457 386:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:531 386:539 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:533 386:541 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:535 386:543 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:537 386:545 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:539 386:547 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 378:551 386:559 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 378:644 386:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:661 386:669 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:665 386:673 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 378:670 386:678 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:673 386:681 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:766 386:774 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:789 386:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:827 386:835 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:865 386:873 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:914 386:922 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:955 386:963 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:1097 386:1105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:1099 386:1107 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:1101 386:1109 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:1103 386:1111 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:1172 386:1180 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 378:1216 386:1224 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 378:1437 386:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:1460 386:1468 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:1485 386:1493 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 378:1490 386:1498 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 378:1599 386:1607 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:1634 386:1642 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:1804 386:1812 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:1901 386:1909 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:1920 386:1928 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:1986 386:1994 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:2055 386:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:2107 386:2115 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:2111 386:2119 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:2242 386:2250 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:2257 386:2265 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:2320 386:2328 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 378:2361 386:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:2452 386:2460 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:2458 386:2466 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 378:2523 386:2531 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:2826 386:2834 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 378:2945 386:2953 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 378:2948 386:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:3137 386:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:3320 386:3328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:3322 386:3330 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:3403 386:3411 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:3502 386:3510 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:3546 386:3554 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:3592 386:3600 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:3596 386:3604 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:3802 386:3810 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:3839 386:3847 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:3859 386:3867 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:3873 386:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:3879 386:3887 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:3922 386:3930 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:3946 386:3954 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 378:3951 386:3959 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:3993 386:4001 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:4002 386:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:4011 386:4019 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:4014 386:4022 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:4023 386:4031 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:4063 386:4071 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:4097 386:4105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:4232 386:4240 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:4287 386:4295 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 378:4337 386:4345 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:4339 386:4347 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:4341 386:4349 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:4343 386:4351 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:4345 386:4353 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:4347 386:4355 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:4349 386:4357 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:4359 386:4367 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:4361 386:4369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 378:4489 386:4497 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 654:13 662:21 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:93 662:101 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:174 662:182 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 654:336 662:344 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:355 662:363 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:457 662:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:529 662:537 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:531 662:539 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:533 662:541 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:535 662:543 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:537 662:545 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:539 662:547 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:551 662:559 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:614 662:622 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:644 662:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:661 662:669 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:665 662:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:670 662:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:766 662:774 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:789 662:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:827 662:835 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:865 662:873 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:914 662:922 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:1099 662:1107 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:1101 662:1109 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:1155 662:1163 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:1172 662:1180 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 654:1216 662:1224 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 654:1437 662:1445 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 654:1485 662:1493 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:1490 662:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:1599 662:1607 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:1631 662:1639 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:1634 662:1642 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:1656 662:1664 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:1842 662:1850 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:1901 662:1909 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 654:1986 662:1994 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 654:2107 662:2115 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:2111 662:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:2242 662:2250 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:2257 662:2265 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:2320 662:2328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:2361 662:2369 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 654:2452 662:2460 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:2458 662:2466 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:2463 662:2471 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:2826 662:2834 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:2876 662:2884 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:2945 662:2953 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:2948 662:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:3053 662:3061 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:3137 662:3145 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:3189 662:3197 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:3320 662:3328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:3322 662:3330 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:3403 662:3411 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:3502 662:3510 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:3592 662:3600 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:3687 662:3695 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:3752 662:3760 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:3802 662:3810 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:3839 662:3847 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:3859 662:3867 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:3879 662:3887 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:3922 662:3930 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:3946 662:3954 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:3951 662:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:3993 662:4001 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:4002 662:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:4011 662:4019 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:4014 662:4022 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:4063 662:4071 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:4232 662:4240 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:4287 662:4295 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:4337 662:4345 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:4339 662:4347 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:4341 662:4349 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:4343 662:4351 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:4345 662:4353 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:4347 662:4355 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:4349 662:4357 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 654:4359 662:4367 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:4361 662:4369 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 654:4489 662:4497 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 667:93 675:101 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:174 675:182 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 667:457 675:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:531 675:539 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:533 675:541 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:535 675:543 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:537 675:545 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 667:539 675:547 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:551 675:559 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:579 675:587 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 667:614 675:622 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:644 675:652 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 667:665 675:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 667:670 675:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:766 675:774 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 667:789 675:797 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 667:827 675:835 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 667:865 675:873 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 667:955 675:963 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 667:1099 675:1107 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 667:1101 675:1109 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:1103 675:1111 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:1112 675:1120 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:1172 675:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:1216 675:1224 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 667:1460 675:1468 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 667:1490 675:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 667:1599 675:1607 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:1656 675:1664 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 667:1804 675:1812 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 667:1901 675:1909 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:1920 675:1928 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:2055 675:2063 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 667:2111 675:2119 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 667:2201 675:2209 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:2242 675:2250 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:2257 675:2265 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 667:2320 675:2328 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 667:2452 675:2460 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:2458 675:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:2826 675:2834 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 667:2945 675:2953 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 667:3189 675:3197 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:3320 675:3328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 667:3322 675:3330 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:3403 675:3411 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 667:3469 675:3477 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:3546 675:3554 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 667:3592 675:3600 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:3752 675:3760 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:3802 675:3810 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:3839 675:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:3859 675:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:3873 675:3881 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 667:3879 675:3887 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 667:3922 675:3930 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:3946 675:3954 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:3951 675:3959 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 667:4002 675:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:4011 675:4019 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 667:4063 675:4071 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 667:4232 675:4240 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:4287 675:4295 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 667:4335 675:4343 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:4337 675:4345 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 667:4339 675:4347 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:4341 675:4349 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:4343 675:4351 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:4345 675:4353 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:4347 675:4355 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:4349 675:4357 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:4359 675:4367 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 667:4489 675:4497 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 873:93 881:101 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 873:174 881:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:457 881:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:529 881:537 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 873:531 881:539 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:533 881:541 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:535 881:543 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:614 881:622 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 873:644 881:652 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 873:661 881:669 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:665 881:673 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:670 881:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:789 881:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:812 881:820 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:827 881:835 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:865 881:873 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:955 881:963 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 873:1097 881:1105 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 873:1099 881:1107 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:1155 881:1163 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 873:1216 881:1224 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:1437 881:1445 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 873:1485 881:1493 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:1490 881:1498 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:1631 881:1639 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:1642 881:1650 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:1656 881:1664 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 873:1901 881:1909 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:1986 881:1994 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 873:2055 881:2063 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 873:2107 881:2115 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 873:2201 881:2209 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 873:2242 881:2250 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 873:2361 881:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:2463 881:2471 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:2826 881:2834 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:2876 881:2884 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 873:2948 881:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:3053 881:3061 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:3137 881:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:3189 881:3197 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 873:3245 881:3253 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:3320 881:3328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:3403 881:3411 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 873:3502 881:3510 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 873:3592 881:3600 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:3752 881:3760 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:3839 881:3847 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 873:3859 881:3867 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 873:3879 881:3887 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:3922 881:3930 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:3946 881:3954 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 873:3951 881:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:4002 881:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:4063 881:4071 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:4335 881:4343 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 873:4337 881:4345 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:4339 881:4347 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:4341 881:4349 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:4343 881:4351 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:4345 881:4353 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:4347 881:4355 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:4349 881:4357 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 873:4357 881:4365 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:13 885:21 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:93 885:101 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 877:174 885:182 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 877:336 885:344 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 877:355 885:363 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 877:531 885:539 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 877:533 885:541 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 877:535 885:543 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 877:537 885:545 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 877:539 885:547 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 877:551 885:559 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:661 885:669 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 877:665 885:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 877:827 885:835 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:914 885:922 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:1097 885:1105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:1099 885:1107 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:1101 885:1109 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 877:1103 885:1111 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:1172 885:1180 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 877:1216 885:1224 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 877:1437 885:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:1485 885:1493 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:1490 885:1498 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:1599 885:1607 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:1631 885:1639 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:1842 885:1850 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:1901 885:1909 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:1986 885:1994 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 877:2107 885:2115 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:2111 885:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:2320 885:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:2361 885:2369 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 877:2458 885:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:2826 885:2834 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:2945 885:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:3137 885:3145 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 877:3320 885:3328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 877:3322 885:3330 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:3469 885:3477 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:3596 885:3604 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:3946 885:3954 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 877:4014 885:4022 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:4023 885:4031 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:4232 885:4240 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:4335 885:4343 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:4337 885:4345 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:4339 885:4347 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 877:4341 885:4349 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 877:4343 885:4351 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 877:4345 885:4353 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 877:4347 885:4355 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 877:4349 885:4357 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 877:4353 885:4361 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:4357 885:4365 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 877:4359 885:4367 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 877:4361 885:4369 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 877:4489 885:4497 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:13 1080:21 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1072:174 1080:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:336 1080:344 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:457 1080:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:508 1080:516 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:614 1080:622 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:665 1080:673 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:673 1080:681 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1072:789 1080:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:914 1080:922 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:1172 1080:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:1216 1080:1224 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:1437 1080:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:1460 1080:1468 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:1490 1080:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1072:1634 1080:1642 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1072:1821 1080:1829 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1072:1901 1080:1909 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1072:1986 1080:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:2242 1080:2250 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:2257 1080:2265 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:2361 1080:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:2452 1080:2460 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:2458 1080:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:2655 1080:2663 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:2793 1080:2801 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1072:2948 1080:2956 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1072:3293 1080:3301 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:3403 1080:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:3546 1080:3554 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:3592 1080:3600 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:3802 1080:3810 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1072:4002 1080:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1072:4014 1080:4022 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1072:4361 1080:4369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:174 1249:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:368 1249:376 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:457 1249:465 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1241:579 1249:587 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1241:614 1249:622 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1241:644 1249:652 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1241:665 1249:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1241:670 1249:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:766 1249:774 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:789 1249:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:812 1249:820 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:827 1249:835 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1241:865 1249:873 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1241:914 1249:922 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:955 1249:963 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:1055 1249:1063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:1112 1249:1120 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:1216 1249:1224 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:1490 1249:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1241:1599 1249:1607 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:1631 1249:1639 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:1642 1249:1650 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:1656 1249:1664 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:1804 1249:1812 1 + 0 1 HSCKBG:MMCRKNB ssitesim alignGT 1241:1842 1249:1850 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:2055 1249:2063 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1241:2111 1249:2119 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1241:2201 1249:2209 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:2242 1249:2250 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1241:2257 1249:2265 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1241:2320 1249:2328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1241:2452 1249:2460 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1241:2655 1249:2663 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1241:2793 1249:2801 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:2826 1249:2834 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1241:2876 1249:2884 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:2945 1249:2953 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1241:3053 1249:3061 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1241:3189 1249:3197 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:3403 1249:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:3469 1249:3477 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:3502 1249:3510 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:3546 1249:3554 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1241:3592 1249:3600 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:3752 1249:3760 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:3802 1249:3810 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1241:3839 1249:3847 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1241:3859 1249:3867 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1241:3873 1249:3881 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 1241:3879 1249:3887 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1241:3922 1249:3930 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1241:3946 1249:3954 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:3951 1249:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:3993 1249:4001 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:4002 1249:4010 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1241:4011 1249:4019 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1241:4063 1249:4071 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:4097 1249:4105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:4287 1249:4295 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1241:4489 1249:4497 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1258:336 1266:344 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1258:529 1266:537 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1258:789 1266:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1258:1097 1266:1105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1258:1155 1266:1163 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1258:1437 1266:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1258:1485 1266:1493 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1258:1490 1266:1498 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1258:1634 1266:1642 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1258:1821 1266:1829 1 + 0 1 HSCKBG:MMCRKNB ssitesim alignGT 1258:1901 1266:1909 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1258:1986 1266:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1258:2107 1266:2115 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1258:2361 1266:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1258:2793 1266:2801 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1258:3200 1266:3208 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1258:3322 1266:3330 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1258:3596 1266:3604 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1258:3802 1266:3810 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1258:4353 1266:4361 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1258:4359 1266:4367 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1258:4361 1266:4369 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1338:174 1346:182 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1338:336 1346:344 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:457 1346:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:614 1346:622 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:665 1346:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1338:766 1346:774 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:827 1346:835 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:914 1346:922 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:1155 1346:1163 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:1172 1346:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:1216 1346:1224 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1338:1437 1346:1445 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1338:1460 1346:1468 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:1490 1346:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1338:1634 1346:1642 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:1642 1346:1650 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:1821 1346:1829 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1338:1842 1346:1850 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:1901 1346:1909 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 1338:1986 1346:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:2111 1346:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:2242 1346:2250 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1338:2257 1346:2265 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1338:2361 1346:2369 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1338:2452 1346:2460 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:2458 1346:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:2463 1346:2471 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1338:2655 1346:2663 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1338:2793 1346:2801 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1338:2876 1346:2884 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:3053 1346:3061 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:3320 1346:3328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:3403 1346:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:3502 1346:3510 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:3592 1346:3600 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1338:3752 1346:3760 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:3802 1346:3810 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:3839 1346:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:3859 1346:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:4002 1346:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:4063 1346:4071 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:4232 1346:4240 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:4287 1346:4295 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:4353 1346:4361 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:4359 1346:4367 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1338:4361 1346:4369 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1423:13 1431:21 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:93 1431:101 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:355 1431:363 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:551 1431:559 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:644 1431:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:670 1431:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:789 1431:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:955 1431:963 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:1055 1431:1063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:1097 1431:1105 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1423:1103 1431:1111 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:1172 1431:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:1437 1431:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:1485 1431:1493 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1423:1490 1431:1498 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:1599 1431:1607 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:2055 1431:2063 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1423:2201 1431:2209 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1423:2320 1431:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:2876 1431:2884 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:2948 1431:2956 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1423:3245 1431:3253 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:3293 1431:3301 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:3322 1431:3330 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:3469 1431:3477 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:3839 1431:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:3859 1431:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:3922 1431:3930 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:3946 1431:3954 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1423:4023 1431:4031 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1423:4097 1431:4105 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1423:4335 1431:4343 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:13 1489:21 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:93 1489:101 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:174 1489:182 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1481:336 1489:344 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1481:355 1489:363 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:457 1489:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:529 1489:537 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:539 1489:547 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:661 1489:669 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:670 1489:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:789 1489:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:914 1489:922 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1481:1097 1489:1105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:1099 1489:1107 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:1155 1489:1163 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:1172 1489:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:1216 1489:1224 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1481:1437 1489:1445 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1481:1485 1489:1493 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1481:1821 1489:1829 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:1920 1489:1928 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:1986 1489:1994 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1481:2055 1489:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:2107 1489:2115 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1481:2320 1489:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:2361 1489:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:2452 1489:2460 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:2826 1489:2834 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1481:2945 1489:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:3137 1489:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:3596 1489:3604 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1481:3946 1489:3954 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1481:4011 1489:4019 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:4014 1489:4022 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:4335 1489:4343 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1481:4337 1489:4345 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:4359 1489:4367 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:4361 1489:4369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1481:4489 1489:4497 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1517:13 1525:21 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1517:174 1525:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1517:355 1525:363 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1517:579 1525:587 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1517:644 1525:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1517:670 1525:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1517:789 1525:797 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1517:865 1525:873 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1517:955 1525:963 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1517:1055 1525:1063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1517:1097 1525:1105 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1517:1172 1525:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1517:1631 1525:1639 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1517:1634 1525:1642 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1517:1656 1525:1664 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1517:1804 1525:1812 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1517:1842 1525:1850 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1517:2201 1525:2209 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1517:2361 1525:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1517:2876 1525:2884 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1517:2948 1525:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1517:3200 1525:3208 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1517:3293 1525:3301 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1517:3322 1525:3330 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1517:3469 1525:3477 1 + 0 1 HSCKBG:MMCRKNB ssitesim alignGT 1517:3752 1525:3760 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1517:3802 1525:3810 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1517:3879 1525:3887 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1517:3951 1525:3959 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1517:3993 1525:4001 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1517:4014 1525:4022 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1517:4023 1525:4031 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1517:4097 1525:4105 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1517:4335 1525:4343 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1517:4357 1525:4365 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1517:4359 1525:4367 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:174 1624:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:355 1624:363 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:457 1624:465 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1616:529 1624:537 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:537 1624:545 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:539 1624:547 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:579 1624:587 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:614 1624:622 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1616:644 1624:652 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1616:665 1624:673 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1616:766 1624:774 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:812 1624:820 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:827 1624:835 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:865 1624:873 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1616:914 1624:922 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:1055 1624:1063 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1616:1112 1624:1120 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1616:1155 1624:1163 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1616:1216 1624:1224 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:1437 1624:1445 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1616:1485 1624:1493 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:1490 1624:1498 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1616:1599 1624:1607 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:1631 1624:1639 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:1642 1624:1650 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1616:1656 1624:1664 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:1804 1624:1812 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1616:1842 1624:1850 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1616:1901 1624:1909 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:1986 1624:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:2055 1624:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:2111 1624:2119 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1616:2201 1624:2209 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:2242 1624:2250 1 + 0 1 HSCKBG:MMCRKNB ssitesim alignGT 1616:2257 1624:2265 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1616:2320 1624:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:2361 1624:2369 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1616:2452 1624:2460 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1616:2458 1624:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:2655 1624:2663 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1616:2793 1624:2801 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:2826 1624:2834 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1616:2876 1624:2884 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1616:2945 1624:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:3053 1624:3061 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1616:3137 1624:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:3189 1624:3197 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:3320 1624:3328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:3403 1624:3411 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1616:3502 1624:3510 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1616:3546 1624:3554 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1616:3592 1624:3600 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:3687 1624:3695 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:3752 1624:3760 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1616:3802 1624:3810 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1616:3839 1624:3847 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 1616:3859 1624:3867 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 1616:3873 1624:3881 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1616:3879 1624:3887 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1616:3922 1624:3930 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1616:3946 1624:3954 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1616:3993 1624:4001 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:4002 1624:4010 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1616:4011 1624:4019 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:4063 1624:4071 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:4097 1624:4105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:4287 1624:4295 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:4357 1624:4365 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:4361 1624:4369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1616:4489 1624:4497 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:13 1738:21 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:93 1738:101 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:174 1738:182 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1730:457 1738:465 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1730:529 1738:537 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:531 1738:539 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:533 1738:541 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:535 1738:543 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:537 1738:545 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:539 1738:547 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:551 1738:559 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:614 1738:622 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1730:644 1738:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:665 1738:673 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1730:766 1738:774 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:789 1738:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:827 1738:835 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1730:865 1738:873 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:914 1738:922 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:1055 1738:1063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:1099 1738:1107 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:1101 1738:1109 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:1155 1738:1163 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1730:1172 1738:1180 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1730:1216 1738:1224 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1730:1437 1738:1445 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1730:1490 1738:1498 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1730:1634 1738:1642 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:1642 1738:1650 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:1656 1738:1664 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:1804 1738:1812 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:1821 1738:1829 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:1842 1738:1850 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1730:1901 1738:1909 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1730:1986 1738:1994 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1730:2111 1738:2119 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1730:2242 1738:2250 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1730:2257 1738:2265 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1730:2320 1738:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:2361 1738:2369 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 1730:2458 1738:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:2463 1738:2471 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:2655 1738:2663 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:2793 1738:2801 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:2826 1738:2834 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:2876 1738:2884 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1730:2945 1738:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:2948 1738:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:3053 1738:3061 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1730:3137 1738:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:3189 1738:3197 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:3320 1738:3328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1730:3322 1738:3330 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:3403 1738:3411 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1730:3502 1738:3510 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:3546 1738:3554 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:3592 1738:3600 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1730:3752 1738:3760 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1730:3802 1738:3810 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1730:3839 1738:3847 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1730:3859 1738:3867 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1730:3873 1738:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:3879 1738:3887 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:3922 1738:3930 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:3946 1738:3954 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:3951 1738:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:4002 1738:4010 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1730:4014 1738:4022 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:4063 1738:4071 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:4287 1738:4295 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:4337 1738:4345 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:4339 1738:4347 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:4341 1738:4349 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:4343 1738:4351 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:4345 1738:4353 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:4347 1738:4355 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:4349 1738:4357 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1730:4359 1738:4367 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1730:4361 1738:4369 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1730:4489 1738:4497 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:13 1822:21 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1814:355 1822:363 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1814:457 1822:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:508 1822:516 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1814:551 1822:559 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1814:644 1822:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:670 1822:678 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 1814:673 1822:681 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1814:789 1822:797 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1814:955 1822:963 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1814:1097 1822:1105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:1155 1822:1163 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:1172 1822:1180 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1814:1216 1822:1224 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:1437 1822:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:1460 1822:1468 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:1485 1822:1493 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1814:1490 1822:1498 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:1599 1822:1607 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:1656 1822:1664 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:1986 1822:1994 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1814:2055 1822:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:2107 1822:2115 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:2111 1822:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:2320 1822:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:2458 1822:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:2523 1822:2531 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1814:2826 1822:2834 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:2945 1822:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:2948 1822:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:3053 1822:3061 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:3137 1822:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:3245 1822:3253 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:3320 1822:3328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:3687 1822:3695 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1814:3752 1822:3760 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:3802 1822:3810 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:3873 1822:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:3922 1822:3930 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:3946 1822:3954 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1814:3951 1822:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:3993 1822:4001 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 1814:4002 1822:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:4011 1822:4019 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:4014 1822:4022 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1814:4023 1822:4031 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1814:4097 1822:4105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:4232 1822:4240 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1814:4489 1822:4497 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:174 1829:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:336 1829:344 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:355 1829:363 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:457 1829:465 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:539 1829:547 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:579 1829:587 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:665 1829:673 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:673 1829:681 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:766 1829:774 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:812 1829:820 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:914 1829:922 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 1821:1112 1829:1120 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:1216 1829:1224 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:1460 1829:1468 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:1485 1829:1493 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:1490 1829:1498 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:1599 1829:1607 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:1804 1829:1812 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:1901 1829:1909 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:1920 1829:1928 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:1986 1829:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:2055 1829:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:2107 1829:2115 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:2242 1829:2250 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:2257 1829:2265 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:2320 1829:2328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:2452 1829:2460 1 + 0 1 HSCKBG:MMCRKNB ssitesim alignGT 1821:2458 1829:2466 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:2523 1829:2531 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:2655 1829:2663 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:2793 1829:2801 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:2826 1829:2834 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 1821:2945 1829:2953 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:3403 1829:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:3502 1829:3510 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:3592 1829:3600 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:3596 1829:3604 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:3839 1829:3847 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:3859 1829:3867 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:3873 1829:3881 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:3879 1829:3887 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:3922 1829:3930 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:3946 1829:3954 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:3993 1829:4001 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 1821:4011 1829:4019 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:4063 1829:4071 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:4232 1829:4240 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:4287 1829:4295 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 1821:4489 1829:4497 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2065:93 2073:101 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:355 2073:363 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:529 2073:537 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:537 2073:545 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:539 2073:547 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:644 2073:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:665 2073:673 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:670 2073:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:789 2073:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:955 2073:963 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:1097 2073:1105 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2065:1103 2073:1111 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:1155 2073:1163 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:1437 2073:1445 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2065:1485 2073:1493 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2065:1490 2073:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2065:1821 2073:1829 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:1920 2073:1928 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2065:1986 2073:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:2055 2073:2063 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2065:2107 2073:2115 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:2201 2073:2209 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2065:2242 2073:2250 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:2458 2073:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:2826 2073:2834 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:2948 2073:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:3322 2073:3330 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:3403 2073:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:3502 2073:3510 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:3596 2073:3604 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2065:3839 2073:3847 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2065:3859 2073:3867 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2065:3946 2073:3954 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2065:4023 2073:4031 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:4063 2073:4071 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2065:4097 2073:4105 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2065:4335 2073:4343 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:13 2104:21 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:93 2104:101 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:174 2104:182 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:355 2104:363 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:457 2104:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:529 2104:537 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:531 2104:539 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:533 2104:541 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:535 2104:543 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:537 2104:545 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:539 2104:547 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2096:551 2104:559 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:614 2104:622 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:644 2104:652 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:661 2104:669 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:665 2104:673 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2096:670 2104:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:766 2104:774 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:827 2104:835 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:865 2104:873 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:914 2104:922 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:1099 2104:1107 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:1101 2104:1109 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:1103 2104:1111 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:1112 2104:1120 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:1155 2104:1163 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:1172 2104:1180 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:1216 2104:1224 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2096:1437 2104:1445 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:1460 2104:1468 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:1485 2104:1493 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:1490 2104:1498 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2096:1599 2104:1607 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:1631 2104:1639 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:1656 2104:1664 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:1804 2104:1812 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:1901 2104:1909 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:1920 2104:1928 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:1986 2104:1994 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:2055 2104:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:2107 2104:2115 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:2111 2104:2119 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:2201 2104:2209 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:2242 2104:2250 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2096:2257 2104:2265 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:2320 2104:2328 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2096:2361 2104:2369 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:2452 2104:2460 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:2458 2104:2466 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2096:2463 2104:2471 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:2826 2104:2834 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2096:2876 2104:2884 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:2945 2104:2953 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2096:3053 2104:3061 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:3137 2104:3145 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:3189 2104:3197 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:3320 2104:3328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:3403 2104:3411 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2096:3502 2104:3510 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:3546 2104:3554 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:3592 2104:3600 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:3596 2104:3604 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:3687 2104:3695 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:3752 2104:3760 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:3839 2104:3847 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2096:3859 2104:3867 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2096:3873 2104:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:3879 2104:3887 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:3922 2104:3930 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2096:3946 2104:3954 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2096:3951 2104:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:3993 2104:4001 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:4002 2104:4010 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:4011 2104:4019 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:4014 2104:4022 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:4063 2104:4071 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:4232 2104:4240 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:4287 2104:4295 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2096:4337 2104:4345 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:4339 2104:4347 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:4341 2104:4349 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:4343 2104:4351 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:4345 2104:4353 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:4347 2104:4355 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:4349 2104:4357 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:4359 2104:4367 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:4361 2104:4369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2096:4489 2104:4497 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2121:13 2129:21 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:174 2129:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:355 2129:363 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2121:457 2129:465 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:537 2129:545 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:539 2129:547 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:551 2129:559 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:579 2129:587 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:644 2129:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:661 2129:669 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:665 2129:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:670 2129:678 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:673 2129:681 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:766 2129:774 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:789 2129:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:812 2129:820 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:865 2129:873 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:914 2129:922 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:955 2129:963 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:1097 2129:1105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:1112 2129:1120 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:1172 2129:1180 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:1216 2129:1224 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:1437 2129:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:1460 2129:1468 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:1485 2129:1493 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2121:1490 2129:1498 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2121:1599 2129:1607 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:1631 2129:1639 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:1634 2129:1642 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:1804 2129:1812 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:1986 2129:1994 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:2055 2129:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:2107 2129:2115 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:2111 2129:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:2242 2129:2250 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2121:2257 2129:2265 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:2320 2129:2328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:2452 2129:2460 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2121:2458 2129:2466 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2121:2523 2129:2531 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:2826 2129:2834 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 2121:2876 2129:2884 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:2945 2129:2953 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:2948 2129:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:3053 2129:3061 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:3137 2129:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:3293 2129:3301 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:3320 2129:3328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:3403 2129:3411 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:3469 2129:3477 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:3502 2129:3510 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:3546 2129:3554 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:3596 2129:3604 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:3687 2129:3695 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:3752 2129:3760 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:3802 2129:3810 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:3839 2129:3847 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2121:3859 2129:3867 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2121:3873 2129:3881 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:3879 2129:3887 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:3922 2129:3930 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2121:3946 2129:3954 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2121:3951 2129:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:3993 2129:4001 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2121:4002 2129:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:4011 2129:4019 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:4014 2129:4022 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:4063 2129:4071 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:4097 2129:4105 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2121:4232 2129:4240 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:4287 2129:4295 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:4357 2129:4365 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2121:4489 2129:4497 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2142:174 2150:182 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2142:457 2150:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:614 2150:622 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:665 2150:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2142:766 2150:774 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2142:812 2150:820 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:827 2150:835 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:914 2150:922 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2142:1112 2150:1120 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:1155 2150:1163 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:1172 2150:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:1216 2150:1224 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2142:1437 2150:1445 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2142:1490 2150:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2142:1634 2150:1642 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:1642 2150:1650 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2142:1821 2150:1829 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:1842 2150:1850 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:1901 2150:1909 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2142:1920 2150:1928 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:1986 2150:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:2111 2150:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:2242 2150:2250 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2142:2257 2150:2265 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2142:2361 2150:2369 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2142:2458 2150:2466 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2142:2463 2150:2471 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:2655 2150:2663 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:2793 2150:2801 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:2876 2150:2884 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:3053 2150:3061 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:3293 2150:3301 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:3320 2150:3328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:3403 2150:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:3502 2150:3510 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2142:3592 2150:3600 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2142:3752 2150:3760 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:3802 2150:3810 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:3839 2150:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:3859 2150:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:4002 2150:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:4063 2150:4071 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2142:4287 2150:4295 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:4359 2150:4367 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2142:4361 2150:4369 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2370:13 2378:21 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2370:529 2378:537 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2370:551 2378:559 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2370:644 2378:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2370:670 2378:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2370:673 2378:681 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2370:789 2378:797 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2370:955 2378:963 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2370:1097 2378:1105 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2370:1172 2378:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2370:1460 2378:1468 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2370:1634 2378:1642 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2370:1642 2378:1650 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2370:1656 2378:1664 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2370:1821 2378:1829 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2370:1901 2378:1909 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2370:2055 2378:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2370:2463 2378:2471 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2370:2948 2378:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2370:3200 2378:3208 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2370:3293 2378:3301 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2370:3951 2378:3959 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2370:4335 2378:4343 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2370:4353 2378:4361 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:13 2385:21 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:93 2385:101 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:174 2385:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:457 2385:465 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2377:529 2385:537 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2377:531 2385:539 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:533 2385:541 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:535 2385:543 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:614 2385:622 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 2377:644 2385:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:661 2385:669 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2377:665 2385:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2377:827 2385:835 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2377:865 2385:873 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2377:955 2385:963 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:1055 2385:1063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:1097 2385:1105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:1099 2385:1107 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:1155 2385:1163 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2377:1216 2385:1224 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:1437 2385:1445 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2377:1490 2385:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2377:1599 2385:1607 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:1631 2385:1639 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:1634 2385:1642 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:1642 2385:1650 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2377:1656 2385:1664 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2377:1804 2385:1812 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:1842 2385:1850 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:1901 2385:1909 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:1986 2385:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:2107 2385:2115 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:2111 2385:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:2242 2385:2250 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2377:2257 2385:2265 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:2361 2385:2369 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2377:2655 2385:2663 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:2793 2385:2801 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2377:2826 2385:2834 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:2876 2385:2884 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:2948 2385:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:3053 2385:3061 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2377:3137 2385:3145 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2377:3189 2385:3197 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2377:3245 2385:3253 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:3320 2385:3328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:3403 2385:3411 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2377:3502 2385:3510 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:3546 2385:3554 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2377:3592 2385:3600 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2377:3752 2385:3760 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:3802 2385:3810 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:3839 2385:3847 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2377:3859 2385:3867 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2377:3873 2385:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:3879 2385:3887 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:3922 2385:3930 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:3946 2385:3954 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:3951 2385:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:4002 2385:4010 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2377:4011 2385:4019 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:4014 2385:4022 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:4335 2385:4343 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:4337 2385:4345 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:4339 2385:4347 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:4341 2385:4349 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:4343 2385:4351 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:4345 2385:4353 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:4347 2385:4355 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:4349 2385:4357 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:4357 2385:4365 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2377:4361 2385:4369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:13 2463:21 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:93 2463:101 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:174 2463:182 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:355 2463:363 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:457 2463:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:531 2463:539 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:533 2463:541 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:535 2463:543 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:537 2463:545 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:539 2463:547 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2455:551 2463:559 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2455:644 2463:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:661 2463:669 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:665 2463:673 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2455:670 2463:678 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:673 2463:681 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:766 2463:774 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:789 2463:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:827 2463:835 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:865 2463:873 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:914 2463:922 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:955 2463:963 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:1097 2463:1105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:1099 2463:1107 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:1101 2463:1109 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:1103 2463:1111 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:1172 2463:1180 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2455:1216 2463:1224 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2455:1437 2463:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:1460 2463:1468 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:1485 2463:1493 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2455:1490 2463:1498 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 2455:1599 2463:1607 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:1634 2463:1642 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:1804 2463:1812 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:1901 2463:1909 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:1920 2463:1928 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:1986 2463:1994 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:2055 2463:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:2107 2463:2115 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:2111 2463:2119 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:2242 2463:2250 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:2257 2463:2265 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:2320 2463:2328 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2455:2361 2463:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:2452 2463:2460 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:2458 2463:2466 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 2455:2523 2463:2531 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:2826 2463:2834 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2455:2945 2463:2953 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2455:2948 2463:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:3137 2463:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:3320 2463:3328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:3322 2463:3330 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:3403 2463:3411 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:3502 2463:3510 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:3546 2463:3554 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:3592 2463:3600 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:3596 2463:3604 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:3802 2463:3810 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:3839 2463:3847 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:3859 2463:3867 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:3873 2463:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:3879 2463:3887 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:3922 2463:3930 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:3946 2463:3954 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2455:3951 2463:3959 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:3993 2463:4001 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:4002 2463:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:4011 2463:4019 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:4014 2463:4022 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:4023 2463:4031 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:4063 2463:4071 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:4097 2463:4105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:4232 2463:4240 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:4287 2463:4295 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2455:4337 2463:4345 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:4339 2463:4347 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:4341 2463:4349 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:4343 2463:4351 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:4345 2463:4353 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:4347 2463:4355 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:4349 2463:4357 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:4359 2463:4367 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:4361 2463:4369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2455:4489 2463:4497 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2515:174 2523:182 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2515:529 2523:537 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:531 2523:539 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:533 2523:541 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:535 2523:543 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:537 2523:545 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2515:539 2523:547 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:644 2523:652 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2515:665 2523:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2515:766 2523:774 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 2515:812 2523:820 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:865 2523:873 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2515:914 2523:922 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:1099 2523:1107 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:1101 2523:1109 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:1112 2523:1120 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2515:1216 2523:1224 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:1437 2523:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:1460 2523:1468 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2515:1490 2523:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2515:1634 2523:1642 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:1642 2523:1650 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:1656 2523:1664 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:1901 2523:1909 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2515:1920 2523:1928 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2515:2111 2523:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:2242 2523:2250 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2515:2257 2523:2265 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2515:2320 2523:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:2361 2523:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:2452 2523:2460 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:2458 2523:2466 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2515:2463 2523:2471 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:2826 2523:2834 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:2945 2523:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:3320 2523:3328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2515:3403 2523:3411 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2515:3502 2523:3510 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2515:3592 2523:3600 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2515:3752 2523:3760 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:3839 2523:3847 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2515:3859 2523:3867 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2515:3879 2523:3887 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2515:3922 2523:3930 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:3946 2523:3954 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:3951 2523:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:4002 2523:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:4063 2523:4071 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2515:4232 2523:4240 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:4287 2523:4295 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2515:4337 2523:4345 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:4339 2523:4347 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:4341 2523:4349 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:4343 2523:4351 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:4345 2523:4353 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:4347 2523:4355 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:4349 2523:4357 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:4353 2523:4361 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:4359 2523:4367 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2515:4489 2523:4497 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:13 2557:21 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2549:174 2557:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:529 2557:537 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:551 2557:559 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:614 2557:622 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:644 2557:652 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2549:670 2557:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:789 2557:797 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2549:865 2557:873 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:955 2557:963 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:1055 2557:1063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:1155 2557:1163 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:1172 2557:1180 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2549:1216 2557:1224 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:1437 2557:1445 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 2549:1599 2557:1607 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:1642 2557:1650 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:1656 2557:1664 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2549:1842 2557:1850 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:1901 2557:1909 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:1986 2557:1994 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2549:2055 2557:2063 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2549:2201 2557:2209 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2549:2242 2557:2250 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:2320 2557:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:2361 2557:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:2463 2557:2471 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2549:2876 2557:2884 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 2549:2948 2557:2956 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2549:3053 2557:3061 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2549:3189 2557:3197 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2549:3245 2557:3253 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2549:3293 2557:3301 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2549:3322 2557:3330 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:3403 2557:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:3502 2557:3510 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:3752 2557:3760 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2549:3802 2557:3810 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:3839 2557:3847 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2549:3859 2557:3867 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2549:3879 2557:3887 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:3922 2557:3930 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2549:3946 2557:3954 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:4002 2557:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2549:4014 2557:4022 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:93 2575:101 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:174 2575:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:355 2575:363 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:457 2575:465 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2567:529 2575:537 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:531 2575:539 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:533 2575:541 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:535 2575:543 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:614 2575:622 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2567:644 2575:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:661 2575:669 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:665 2575:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:812 2575:820 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:827 2575:835 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:865 2575:873 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:914 2575:922 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:955 2575:963 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:1055 2575:1063 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:1097 2575:1105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:1099 2575:1107 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:1112 2575:1120 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:1155 2575:1163 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:1216 2575:1224 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:1437 2575:1445 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:1490 2575:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:1631 2575:1639 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:1642 2575:1650 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2567:1656 2575:1664 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:1804 2575:1812 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:1842 2575:1850 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:1901 2575:1909 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:1986 2575:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:2107 2575:2115 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:2111 2575:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:2242 2575:2250 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 2567:2257 2575:2265 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:2361 2575:2369 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:2452 2575:2460 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:2655 2575:2663 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:2793 2575:2801 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:2826 2575:2834 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:2876 2575:2884 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:3053 2575:3061 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2567:3137 2575:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:3189 2575:3197 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:3320 2575:3328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:3403 2575:3411 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:3502 2575:3510 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:3546 2575:3554 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:3592 2575:3600 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:3687 2575:3695 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:3752 2575:3760 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:3802 2575:3810 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:3839 2575:3847 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2567:3859 2575:3867 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2567:3873 2575:3881 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:3879 2575:3887 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:3922 2575:3930 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:3946 2575:3954 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:3951 2575:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:3993 2575:4001 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:4002 2575:4010 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:4335 2575:4343 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:4337 2575:4345 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:4339 2575:4347 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:4341 2575:4349 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:4343 2575:4351 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:4345 2575:4353 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:4347 2575:4355 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:4349 2575:4357 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2567:4357 2575:4365 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2567:4361 2575:4369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:336 2602:344 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:355 2602:363 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:529 2602:537 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2594:537 2602:545 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:539 2602:547 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2594:644 2602:652 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2594:661 2602:669 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:665 2602:673 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:670 2602:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:865 2602:873 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:1097 2602:1105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:1155 2602:1163 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2594:1216 2602:1224 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:1437 2602:1445 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2594:1485 2602:1493 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2594:1490 2602:1498 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:1599 2602:1607 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:1631 2602:1639 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:1656 2602:1664 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:1920 2602:1928 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:1986 2602:1994 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2594:2055 2602:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:2107 2602:2115 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2594:2201 2602:2209 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2594:2242 2602:2250 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2594:2320 2602:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:2361 2602:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:2452 2602:2460 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:2458 2602:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:2826 2602:2834 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2594:2945 2602:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:3137 2602:3145 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2594:3403 2602:3411 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2594:3502 2602:3510 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:3596 2602:3604 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2594:3687 2602:3695 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:3839 2602:3847 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2594:3859 2602:3867 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2594:3879 2602:3887 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:3922 2602:3930 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2594:3946 2602:3954 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2594:4002 2602:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:4011 2602:4019 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:4335 2602:4343 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2594:4489 2602:4497 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:93 2643:101 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:355 2643:363 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2635:457 2643:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:537 2643:545 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:539 2643:547 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:579 2643:587 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:665 2643:673 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:812 2643:820 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:1097 2643:1105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:1103 2643:1111 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:1437 2643:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:1485 2643:1493 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2635:1490 2643:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2635:1804 2643:1812 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:1920 2643:1928 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2635:2055 2643:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:2201 2643:2209 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:2242 2643:2250 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2635:2452 2643:2460 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:2458 2643:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:2826 2643:2834 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2635:2876 2643:2884 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:2948 2643:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:3293 2643:3301 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:3322 2643:3330 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:3403 2643:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:3469 2643:3477 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:3502 2643:3510 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2635:3596 2643:3604 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:3802 2643:3810 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:3839 2643:3847 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2635:3859 2643:3867 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2635:3873 2643:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:3879 2643:3887 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:3922 2643:3930 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:3946 2643:3954 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:3993 2643:4001 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:4023 2643:4031 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:4063 2643:4071 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2635:4097 2643:4105 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2635:4357 2643:4365 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:13 2648:21 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:174 2648:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:355 2648:363 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2640:457 2648:465 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:537 2648:545 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:539 2648:547 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:551 2648:559 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:579 2648:587 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:644 2648:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:661 2648:669 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:665 2648:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:670 2648:678 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:673 2648:681 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:766 2648:774 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:789 2648:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:812 2648:820 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:865 2648:873 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:914 2648:922 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:955 2648:963 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:1097 2648:1105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:1112 2648:1120 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:1172 2648:1180 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:1216 2648:1224 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:1437 2648:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:1460 2648:1468 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:1485 2648:1493 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2640:1490 2648:1498 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2640:1599 2648:1607 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:1631 2648:1639 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:1634 2648:1642 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:1804 2648:1812 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:1986 2648:1994 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:2055 2648:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:2107 2648:2115 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:2111 2648:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:2242 2648:2250 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2640:2257 2648:2265 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:2320 2648:2328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:2452 2648:2460 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2640:2458 2648:2466 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2640:2523 2648:2531 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:2826 2648:2834 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 2640:2876 2648:2884 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:2945 2648:2953 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:2948 2648:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:3053 2648:3061 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:3137 2648:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:3293 2648:3301 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:3320 2648:3328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:3403 2648:3411 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:3469 2648:3477 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:3502 2648:3510 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:3546 2648:3554 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:3596 2648:3604 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:3687 2648:3695 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:3752 2648:3760 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:3802 2648:3810 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:3839 2648:3847 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2640:3859 2648:3867 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2640:3873 2648:3881 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:3879 2648:3887 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:3922 2648:3930 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2640:3946 2648:3954 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2640:3951 2648:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:3993 2648:4001 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2640:4002 2648:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:4011 2648:4019 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:4014 2648:4022 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:4063 2648:4071 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:4097 2648:4105 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2640:4232 2648:4240 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:4287 2648:4295 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:4357 2648:4365 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2640:4489 2648:4497 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2743:13 2751:21 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2743:508 2751:516 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2743:551 2751:559 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2743:614 2751:622 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2743:644 2751:652 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2743:665 2751:673 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2743:865 2751:873 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2743:1055 2751:1063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2743:1103 2751:1111 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2743:1112 2751:1120 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2743:1172 2751:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2743:1437 2751:1445 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2743:1490 2751:1498 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2743:1599 2751:1607 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2743:1642 2751:1650 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2743:1656 2751:1664 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2743:1804 2751:1812 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2743:2055 2751:2063 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2743:2111 2751:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2743:2201 2751:2209 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2743:2242 2751:2250 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2743:2320 2751:2328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2743:2463 2751:2471 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2743:2826 2751:2834 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2743:2876 2751:2884 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2743:2945 2751:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2743:2948 2751:2956 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2743:3053 2751:3061 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2743:3137 2751:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2743:3189 2751:3197 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2743:3245 2751:3253 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2743:3293 2751:3301 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2743:3403 2751:3411 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2743:3502 2751:3510 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2743:3546 2751:3554 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2743:3752 2751:3760 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2743:3839 2751:3847 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2743:3859 2751:3867 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2743:3873 2751:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2743:3879 2751:3887 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2743:3922 2751:3930 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2743:3946 2751:3954 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2743:4002 2751:4010 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2743:4011 2751:4019 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2743:4014 2751:4022 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2743:4063 2751:4071 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2743:4097 2751:4105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2743:4489 2751:4497 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:93 2794:101 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:174 2794:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:336 2794:344 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2786:355 2794:363 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:457 2794:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:529 2794:537 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2786:531 2794:539 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:533 2794:541 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:535 2794:543 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:537 2794:545 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2786:539 2794:547 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2786:579 2794:587 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2786:644 2794:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:661 2794:669 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2786:665 2794:673 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:670 2794:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:766 2794:774 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:914 2794:922 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:1097 2794:1105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:1099 2794:1107 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2786:1101 2794:1109 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:1103 2794:1111 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:1155 2794:1163 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2786:1216 2794:1224 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2786:1437 2794:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:1485 2794:1493 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 2786:1490 2794:1498 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:1599 2794:1607 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:1804 2794:1812 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:1821 2794:1829 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:1920 2794:1928 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:1986 2794:1994 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2786:2055 2794:2063 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2786:2107 2794:2115 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 2786:2201 2794:2209 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:2242 2794:2250 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:2257 2794:2265 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:2320 2794:2328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2786:2452 2794:2460 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2786:2458 2794:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:2826 2794:2834 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2786:2945 2794:2953 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2786:3137 2794:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:3403 2794:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:3596 2794:3604 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2786:3687 2794:3695 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:3839 2794:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:3859 2794:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:3873 2794:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:3922 2794:3930 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:3946 2794:3954 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2786:4011 2794:4019 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2786:4063 2794:4071 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:4287 2794:4295 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:4335 2794:4343 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2786:4337 2794:4345 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2786:4339 2794:4347 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:4341 2794:4349 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:4343 2794:4351 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:4345 2794:4353 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:4347 2794:4355 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:4349 2794:4357 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:4357 2794:4365 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:4359 2794:4367 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:4361 2794:4369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2786:4489 2794:4497 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2797:174 2805:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:537 2805:545 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:539 2805:547 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2797:551 2805:559 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:644 2805:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:665 2805:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2797:766 2805:774 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2797:812 2805:820 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:865 2805:873 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:914 2805:922 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2797:1112 2805:1120 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2797:1172 2805:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:1216 2805:1224 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2797:1437 2805:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:1460 2805:1468 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:1485 2805:1493 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:1490 2805:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2797:1599 2805:1607 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:1642 2805:1650 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:1901 2805:1909 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2797:1920 2805:1928 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2797:1986 2805:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:2111 2805:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:2242 2805:2250 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2797:2257 2805:2265 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2797:2320 2805:2328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2797:2361 2805:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:2452 2805:2460 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2797:2458 2805:2466 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 2797:2463 2805:2471 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:2523 2805:2531 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:2826 2805:2834 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2797:2945 2805:2953 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2797:3137 2805:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:3320 2805:3328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:3403 2805:3411 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2797:3502 2805:3510 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2797:3592 2805:3600 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2797:3596 2805:3604 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:3839 2805:3847 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2797:3859 2805:3867 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2797:3879 2805:3887 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:3922 2805:3930 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2797:3946 2805:3954 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2797:4002 2805:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:4011 2805:4019 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2797:4063 2805:4071 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2797:4232 2805:4240 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2797:4287 2805:4295 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2797:4489 2805:4497 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2874:93 2882:101 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:336 2882:344 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:355 2882:363 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:529 2882:537 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2874:531 2882:539 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:533 2882:541 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:535 2882:543 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:537 2882:545 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2874:539 2882:547 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2874:579 2882:587 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:644 2882:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:661 2882:669 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:665 2882:673 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:670 2882:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:789 2882:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:955 2882:963 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:1097 2882:1105 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2874:1099 2882:1107 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:1101 2882:1109 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:1103 2882:1111 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2874:1155 2882:1163 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2874:1437 2882:1445 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2874:1485 2882:1493 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 2874:1490 2882:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2874:1821 2882:1829 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2874:1920 2882:1928 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:1986 2882:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:2055 2882:2063 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2874:2107 2882:2115 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2874:2201 2882:2209 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2874:2242 2882:2250 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:2458 2882:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:2826 2882:2834 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:2948 2882:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:3322 2882:3330 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2874:3403 2882:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:3502 2882:3510 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:3596 2882:3604 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:3839 2882:3847 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2874:3859 2882:3867 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2874:3946 2882:3954 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2874:4023 2882:4031 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:4063 2882:4071 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:4097 2882:4105 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2874:4335 2882:4343 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:4337 2882:4345 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:4339 2882:4347 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:4341 2882:4349 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:4343 2882:4351 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:4345 2882:4353 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:4347 2882:4355 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:4349 2882:4357 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:4357 2882:4365 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:4359 2882:4367 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2874:4361 2882:4369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:13 2922:21 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:174 2922:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:537 2922:545 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:539 2922:547 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:551 2922:559 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:614 2922:622 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:644 2922:652 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:665 2922:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:670 2922:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:673 2922:681 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:766 2922:774 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:827 2922:835 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:865 2922:873 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:1103 2922:1111 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:1112 2922:1120 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:1172 2922:1180 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:1216 2922:1224 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:1437 2922:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:1460 2922:1468 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:1485 2922:1493 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:1490 2922:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:1599 2922:1607 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:1631 2922:1639 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:1656 2922:1664 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:1804 2922:1812 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:1842 2922:1850 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:1901 2922:1909 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:1986 2922:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:2055 2922:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:2111 2922:2119 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2914:2201 2922:2209 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:2242 2922:2250 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:2257 2922:2265 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:2320 2922:2328 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2914:2361 2922:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:2452 2922:2460 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:2458 2922:2466 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:2463 2922:2471 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:2523 2922:2531 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:2826 2922:2834 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:2876 2922:2884 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:2945 2922:2953 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2914:3053 2922:3061 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:3137 2922:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:3189 2922:3197 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:3320 2922:3328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:3403 2922:3411 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:3502 2922:3510 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:3546 2922:3554 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:3687 2922:3695 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:3752 2922:3760 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:3839 2922:3847 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:3859 2922:3867 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:3873 2922:3881 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:3879 2922:3887 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:3922 2922:3930 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2914:3946 2922:3954 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:3951 2922:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:3993 2922:4001 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:4002 2922:4010 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2914:4011 2922:4019 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:4014 2922:4022 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2914:4023 2922:4031 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:4063 2922:4071 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:4097 2922:4105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:4232 2922:4240 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2914:4287 2922:4295 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2914:4489 2922:4497 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 2989:174 2997:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:368 2997:376 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:508 2997:516 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:531 2997:539 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:533 2997:541 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:535 2997:543 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:537 2997:545 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2989:539 2997:547 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:644 2997:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:661 2997:669 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:665 2997:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2989:766 2997:774 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2989:812 2997:820 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:865 2997:873 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2989:914 2997:922 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:1101 2997:1109 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:1112 2997:1120 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2989:1460 2997:1468 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:1490 2997:1498 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:1599 2997:1607 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2989:1634 2997:1642 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2989:1901 2997:1909 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:1920 2997:1928 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:1986 2997:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:2111 2997:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:2242 2997:2250 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:2257 2997:2265 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2989:2452 2997:2460 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:2458 2997:2466 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2989:2793 2997:2801 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:2826 2997:2834 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:3245 2997:3253 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:3320 2997:3328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2989:3403 2997:3411 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 2989:3502 2997:3510 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2989:3546 2997:3554 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2989:3592 2997:3600 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:3596 2997:3604 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:3839 2997:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:3859 2997:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:3879 2997:3887 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:3946 2997:3954 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2989:4002 2997:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:4011 2997:4019 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:4063 2997:4071 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2989:4232 2997:4240 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:4287 2997:4295 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 2989:4339 2997:4347 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:4341 2997:4349 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:4343 2997:4351 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:4345 2997:4353 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:4347 2997:4355 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:4349 2997:4357 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:4353 2997:4361 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:4357 2997:4365 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 2989:4359 2997:4367 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:174 3027:182 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3019:336 3027:344 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3019:531 3027:539 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3019:533 3027:541 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3019:535 3027:543 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3019:537 3027:545 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3019:539 3027:547 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:665 3027:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3019:766 3027:774 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3019:789 3027:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:827 3027:835 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:914 3027:922 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:1099 3027:1107 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:1101 3027:1109 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3019:1172 3027:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:1216 3027:1224 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3019:1437 3027:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:1460 3027:1468 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3019:1490 3027:1498 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:1634 3027:1642 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3019:1821 3027:1829 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:1901 3027:1909 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 3019:1986 3027:1994 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3019:2111 3027:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:2257 3027:2265 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:2361 3027:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:2452 3027:2460 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:2458 3027:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:2463 3027:2471 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:2793 3027:2801 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:3320 3027:3328 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3019:3403 3027:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:3592 3027:3600 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:3596 3027:3604 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:3752 3027:3760 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:3946 3027:3954 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:3951 3027:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:4063 3027:4071 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:4232 3027:4240 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3019:4287 3027:4295 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3019:4337 3027:4345 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:4339 3027:4347 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3019:4341 3027:4349 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3019:4343 3027:4351 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3019:4345 3027:4353 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3019:4347 3027:4355 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3019:4349 3027:4357 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3019:4353 3027:4361 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3019:4357 3027:4365 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3019:4359 3027:4367 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3019:4361 3027:4369 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:13 3080:21 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:174 3080:182 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:457 3080:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:529 3080:537 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:531 3080:539 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:533 3080:541 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:535 3080:543 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:537 3080:545 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:539 3080:547 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:579 3080:587 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:614 3080:622 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:644 3080:652 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3072:661 3080:669 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:665 3080:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:766 3080:774 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:789 3080:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:865 3080:873 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 3072:955 3080:963 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:1097 3080:1105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:1099 3080:1107 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:1101 3080:1109 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:1112 3080:1120 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:1155 3080:1163 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:1216 3080:1224 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:1437 3080:1445 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:1460 3080:1468 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:1485 3080:1493 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:1490 3080:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:1599 3080:1607 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:1634 3080:1642 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:1656 3080:1664 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:1804 3080:1812 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:1901 3080:1909 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:1986 3080:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:2055 3080:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:2111 3080:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:2201 3080:2209 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:2242 3080:2250 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3072:2257 3080:2265 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:2320 3080:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:2361 3080:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:2452 3080:2460 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:2458 3080:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:2793 3080:2801 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:2826 3080:2834 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:2876 3080:2884 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:2945 3080:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:2948 3080:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:3053 3080:3061 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:3137 3080:3145 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:3189 3080:3197 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:3245 3080:3253 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:3320 3080:3328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:3403 3080:3411 1 + 0 1 HSCKBG:MMCRKNB ssitesim alignGT 3072:3502 3080:3510 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:3546 3080:3554 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:3752 3080:3760 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:3839 3080:3847 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3072:3859 3080:3867 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3072:3873 3080:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:3879 3080:3887 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3072:3922 3080:3930 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:3946 3080:3954 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:3951 3080:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:4002 3080:4010 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3072:4011 3080:4019 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:4014 3080:4022 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:4063 3080:4071 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:4287 3080:4295 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3072:4335 3080:4343 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:4337 3080:4345 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:4339 3080:4347 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:4341 3080:4349 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:4343 3080:4351 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:4345 3080:4353 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:4347 3080:4355 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:4349 3080:4357 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:4357 3080:4365 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:4359 3080:4367 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3072:4489 3080:4497 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:13 3082:21 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:93 3082:101 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3074:174 3082:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:336 3082:344 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:355 3082:363 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3074:529 3082:537 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3074:531 3082:539 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3074:533 3082:541 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3074:535 3082:543 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3074:537 3082:545 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3074:539 3082:547 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3074:551 3082:559 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3074:661 3082:669 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3074:665 3082:673 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:670 3082:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:827 3082:835 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:955 3082:963 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:1097 3082:1105 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3074:1099 3082:1107 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3074:1101 3082:1109 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3074:1103 3082:1111 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:1155 3082:1163 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:1172 3082:1180 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3074:1216 3082:1224 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3074:1485 3082:1493 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3074:1490 3082:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3074:1631 3082:1639 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:1821 3082:1829 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:1986 3082:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:2107 3082:2115 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3074:2320 3082:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:2361 3082:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:2458 3082:2466 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3074:2826 3082:2834 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:2945 3082:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:3137 3082:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:3200 3082:3208 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:3320 3082:3328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:3322 3082:3330 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3074:3592 3082:3600 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:3687 3082:3695 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:3946 3082:3954 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:3951 3082:3959 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3074:3993 3082:4001 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:4014 3082:4022 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:4023 3082:4031 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:4335 3082:4343 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3074:4337 3082:4345 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3074:4339 3082:4347 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3074:4341 3082:4349 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3074:4343 3082:4351 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3074:4345 3082:4353 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3074:4347 3082:4355 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3074:4349 3082:4357 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3074:4353 3082:4361 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3074:4357 3082:4365 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3074:4359 3082:4367 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3074:4361 3082:4369 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3074:4489 3082:4497 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:174 3110:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:368 3110:376 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3102:508 3110:516 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:614 3110:622 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:644 3110:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:766 3110:774 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:789 3110:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:812 3110:820 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:827 3110:835 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:865 3110:873 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:914 3110:922 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:1112 3110:1120 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:1172 3110:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:1216 3110:1224 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:1437 3110:1445 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3102:1642 3110:1650 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:1656 3110:1664 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:1901 3110:1909 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3102:1920 3110:1928 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:2201 3110:2209 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:2257 3110:2265 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:2361 3110:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:2458 3110:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:2463 3110:2471 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3102:2655 3110:2663 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:2876 3110:2884 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3102:2945 3110:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:2948 3110:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:3189 3110:3197 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3102:3293 3110:3301 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3102:3322 3110:3330 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3102:3502 3110:3510 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3102:3592 3110:3600 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:3752 3110:3760 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:3802 3110:3810 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:3839 3110:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:3859 3110:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:3879 3110:3887 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:3951 3110:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3102:4063 3110:4071 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3138:13 3146:21 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3138:174 3146:182 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3138:355 3146:363 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:368 3146:376 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:457 3146:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:551 3146:559 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:579 3146:587 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3138:614 3146:622 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:644 3146:652 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3138:670 3146:678 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3138:789 3146:797 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 3138:827 3146:835 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:865 3146:873 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3138:914 3146:922 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:955 3146:963 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3138:1097 3146:1105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:1112 3146:1120 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:1172 3146:1180 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3138:1216 3146:1224 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:1437 3146:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:1460 3146:1468 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:1490 3146:1498 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:1631 3146:1639 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:1634 3146:1642 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3138:1656 3146:1664 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3138:1804 3146:1812 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3138:1842 3146:1850 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:1901 3146:1909 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:1986 3146:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:2242 3146:2250 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:2523 3146:2531 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:2655 3146:2663 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:2826 3146:2834 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:2876 3146:2884 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3138:2945 3146:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:2948 3146:2956 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3138:3053 3146:3061 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:3189 3146:3197 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:3200 3146:3208 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:3293 3146:3301 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3138:3320 3146:3328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:3322 3146:3330 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3138:3403 3146:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:3469 3146:3477 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 3138:3546 3146:3554 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:3752 3146:3760 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3138:3802 3146:3810 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 3138:3839 3146:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:3859 3146:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:3873 3146:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:3879 3146:3887 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3138:3922 3146:3930 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:3951 3146:3959 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3138:3993 3146:4001 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3138:4011 3146:4019 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:4014 3146:4022 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3138:4097 3146:4105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:4357 3146:4365 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3138:4359 3146:4367 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:13 3179:21 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:355 3179:363 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:368 3179:376 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:457 3179:465 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3171:551 3179:559 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3171:614 3179:622 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3171:644 3179:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:665 3179:673 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:670 3179:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:812 3179:820 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:827 3179:835 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:865 3179:873 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:1055 3179:1063 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 3171:1112 3179:1120 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:1155 3179:1163 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3171:1172 3179:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:1437 3179:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:1490 3179:1498 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:1599 3179:1607 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:1631 3179:1639 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:1642 3179:1650 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3171:1656 3179:1664 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:1804 3179:1812 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3171:1842 3179:1850 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3171:2055 3179:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:2111 3179:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:2242 3179:2250 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3171:2320 3179:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:2361 3179:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:2463 3179:2471 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3171:2523 3179:2531 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:2655 3179:2663 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3171:2793 3179:2801 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:2826 3179:2834 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:2876 3179:2884 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3171:2948 3179:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:3053 3179:3061 1 + 0 1 HSCKBG:MMCRKNB ssitesim alignGT 3171:3137 3179:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:3189 3179:3197 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:3245 3179:3253 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3171:3293 3179:3301 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:3320 3179:3328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:3403 3179:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:3502 3179:3510 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:3546 3179:3554 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3171:3687 3179:3695 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3171:3752 3179:3760 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3171:3802 3179:3810 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3171:3839 3179:3847 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3171:3859 3179:3867 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3171:3873 3179:3881 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3171:3879 3179:3887 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3171:3922 3179:3930 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3171:3993 3179:4001 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3171:4002 3179:4010 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3217:13 3225:21 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:93 3225:101 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:336 3225:344 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:355 3225:363 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3217:457 3225:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:529 3225:537 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3217:531 3225:539 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3217:533 3225:541 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3217:535 3225:543 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3217:537 3225:545 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:539 3225:547 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3217:551 3225:559 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:579 3225:587 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:661 3225:669 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3217:670 3225:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:914 3225:922 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:955 3225:963 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:1097 3225:1105 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3217:1099 3225:1107 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3217:1101 3225:1109 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:1155 3225:1163 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:1172 3225:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:1216 3225:1224 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:1485 3225:1493 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3217:1490 3225:1498 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:1631 3225:1639 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3217:1821 3225:1829 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:1986 3225:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:2107 3225:2115 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3217:2242 3225:2250 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:2452 3225:2460 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:2458 3225:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:2523 3225:2531 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:2826 3225:2834 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3217:3137 3225:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:3200 3225:3208 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3217:3322 3225:3330 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:3469 3225:3477 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:3687 3225:3695 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3217:3802 3225:3810 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:3839 3225:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:3859 3225:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:3922 3225:3930 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:3946 3225:3954 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:3951 3225:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:3993 3225:4001 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3217:4014 3225:4022 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:4097 3225:4105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:4335 3225:4343 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:4337 3225:4345 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3217:4339 3225:4347 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3217:4341 3225:4349 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3217:4343 3225:4351 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3217:4345 3225:4353 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3217:4347 3225:4355 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3217:4349 3225:4357 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3217:4353 3225:4361 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:4357 3225:4365 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3217:4359 3225:4367 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3217:4361 3225:4369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3277:336 3285:344 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3277:529 3285:537 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3277:537 3285:545 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3277:539 3285:547 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3277:644 3285:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3277:661 3285:669 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3277:1155 3285:1163 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3277:1437 3285:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3277:1485 3285:1493 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3277:1821 3285:1829 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3277:1901 3285:1909 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3277:1986 3285:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3277:2107 3285:2115 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3277:2201 3285:2209 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3277:2242 3285:2250 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3277:2452 3285:2460 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3277:2458 3285:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3277:2826 3285:2834 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3277:3137 3285:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3277:3403 3285:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3277:3502 3285:3510 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3277:3596 3285:3604 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3277:3687 3285:3695 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3277:3839 3285:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3277:3859 3285:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3277:3922 3285:3930 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3277:3946 3285:3954 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3277:4232 3285:4240 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3277:4353 3285:4361 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:355 3374:363 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3366:457 3374:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:529 3374:537 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:539 3374:547 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:551 3374:559 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:579 3374:587 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:661 3374:669 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:670 3374:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:673 3374:681 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:1055 3374:1063 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3366:1101 3374:1109 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:1103 3374:1111 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:1112 3374:1120 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:1155 3374:1163 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3366:1485 3374:1493 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:1631 3374:1639 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3366:1842 3374:1850 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3366:2107 3374:2115 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:2242 3374:2250 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:2523 3374:2531 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3366:2655 3374:2663 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:2826 3374:2834 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:2876 3374:2884 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:3053 3374:3061 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3366:3137 3374:3145 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3366:3200 3374:3208 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:3687 3374:3695 1 + 0 1 HSCKBG:MMCRKNB ssitesim alignGT 3366:3752 3374:3760 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3366:3839 3374:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:3859 3374:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:3873 3374:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:3879 3374:3887 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:3922 3374:3930 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3366:3993 3374:4001 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3366:4002 3374:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:4014 3374:4022 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:4023 3374:4031 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:4097 3374:4105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:4357 3374:4365 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3366:4489 3374:4497 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:13 3439:21 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:174 3439:182 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3431:355 3439:363 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:457 3439:465 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3431:529 3439:537 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3431:531 3439:539 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:533 3439:541 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:535 3439:543 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:537 3439:545 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:579 3439:587 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:614 3439:622 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:644 3439:652 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3431:665 3439:673 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:766 3439:774 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:789 3439:797 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3431:812 3439:820 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:865 3439:873 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3431:914 3439:922 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3431:955 3439:963 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:1055 3439:1063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:1097 3439:1105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:1099 3439:1107 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:1101 3439:1109 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:1112 3439:1120 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3431:1155 3439:1163 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:1172 3439:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:1216 3439:1224 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3431:1437 3439:1445 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3431:1490 3439:1498 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:1631 3439:1639 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:1634 3439:1642 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3431:1642 3439:1650 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:1656 3439:1664 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3431:1804 3439:1812 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:1842 3439:1850 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3431:1901 3439:1909 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3431:1986 3439:1994 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3431:2242 3439:2250 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3431:2361 3439:2369 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3431:2452 3439:2460 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:2655 3439:2663 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:2826 3439:2834 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3431:2876 3439:2884 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3431:2948 3439:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:3053 3439:3061 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3431:3137 3439:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:3189 3439:3197 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:3293 3439:3301 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:3320 3439:3328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3431:3403 3439:3411 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3431:3469 3439:3477 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3431:3502 3439:3510 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3431:3687 3439:3695 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:3752 3439:3760 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 3431:3802 3439:3810 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3431:3839 3439:3847 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3431:3859 3439:3867 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3431:3873 3439:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:3879 3439:3887 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3431:3922 3439:3930 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3431:3946 3439:3954 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:3951 3439:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:3993 3439:4001 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:4002 3439:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:4014 3439:4022 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:4287 3439:4295 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:4335 3439:4343 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:4337 3439:4345 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:4339 3439:4347 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:4341 3439:4349 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:4343 3439:4351 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:4345 3439:4353 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:4347 3439:4355 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:4349 3439:4357 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3431:4357 3439:4365 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3431:4359 3439:4367 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3431:4361 3439:4369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:13 3489:21 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:355 3489:363 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:368 3489:376 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:457 3489:465 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3481:551 3489:559 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:579 3489:587 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:614 3489:622 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3481:644 3489:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:665 3489:673 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:670 3489:678 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3481:789 3489:797 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3481:827 3489:835 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3481:865 3489:873 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:955 3489:963 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3481:1055 3489:1063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:1097 3489:1105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:1172 3489:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:1490 3489:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3481:1631 3489:1639 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3481:1642 3489:1650 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3481:1656 3489:1664 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3481:1804 3489:1812 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3481:1842 3489:1850 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:2111 3489:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:2242 3489:2250 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3481:2523 3489:2531 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:2655 3489:2663 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3481:2826 3489:2834 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:2876 3489:2884 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:2945 3489:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:2948 3489:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:3053 3489:3061 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3481:3189 3489:3197 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3481:3200 3489:3208 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:3293 3489:3301 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:3322 3489:3330 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:3469 3489:3477 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3481:3546 3489:3554 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3481:3592 3489:3600 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:3752 3489:3760 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:3802 3489:3810 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 3481:3839 3489:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:3859 3489:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:3873 3489:3881 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3481:3879 3489:3887 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3481:3922 3489:3930 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:3951 3489:3959 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3481:3993 3489:4001 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3481:4002 3489:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:4011 3489:4019 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:4014 3489:4022 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:4097 3489:4105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3481:4357 3489:4365 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:13 3526:21 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:93 3526:101 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:174 3526:182 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3518:355 3526:363 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:368 3526:376 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:457 3526:465 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3518:529 3526:537 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:614 3526:622 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:644 3526:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:665 3526:673 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:789 3526:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:812 3526:820 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3518:865 3526:873 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:914 3526:922 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3518:1055 3526:1063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:1112 3526:1120 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:1155 3526:1163 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:1172 3526:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:1216 3526:1224 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3518:1437 3526:1445 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 3518:1490 3526:1498 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:1631 3526:1639 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:1634 3526:1642 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:1642 3526:1650 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:1656 3526:1664 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:1804 3526:1812 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:1842 3526:1850 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3518:1901 3526:1909 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3518:1986 3526:1994 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3518:2055 3526:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:2201 3526:2209 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:2242 3526:2250 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3518:2361 3526:2369 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3518:2452 3526:2460 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:2463 3526:2471 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:2655 3526:2663 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:2826 3526:2834 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3518:2876 3526:2884 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 3518:2948 3526:2956 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3518:3053 3526:3061 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3518:3137 3526:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:3189 3526:3197 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3518:3245 3526:3253 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:3293 3526:3301 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3518:3320 3526:3328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:3322 3526:3330 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:3403 3526:3411 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3518:3469 3526:3477 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:3502 3526:3510 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3518:3687 3526:3695 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:3752 3526:3760 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3518:3802 3526:3810 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3518:3839 3526:3847 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 3518:3859 3526:3867 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 3518:3873 3526:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:3879 3526:3887 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3518:3922 3526:3930 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3518:3946 3526:3954 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:3993 3526:4001 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:4002 3526:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:4014 3526:4022 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:4063 3526:4071 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:4097 3526:4105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:4357 3526:4365 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:4359 3526:4367 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3518:4361 3526:4369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3531:368 3539:376 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3531:457 3539:465 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3531:579 3539:587 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3531:614 3539:622 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3531:644 3539:652 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3531:665 3539:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3531:670 3539:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3531:789 3539:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3531:827 3539:835 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3531:865 3539:873 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3531:955 3539:963 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3531:1055 3539:1063 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3531:1112 3539:1120 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3531:1155 3539:1163 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3531:1437 3539:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3531:1490 3539:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3531:1599 3539:1607 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3531:1631 3539:1639 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3531:1642 3539:1650 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3531:1656 3539:1664 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3531:1804 3539:1812 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 3531:1842 3539:1850 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3531:2055 3539:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3531:2111 3539:2119 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3531:2201 3539:2209 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3531:2242 3539:2250 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 3531:2257 3539:2265 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3531:2320 3539:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3531:2361 3539:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3531:2452 3539:2460 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3531:2655 3539:2663 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3531:2826 3539:2834 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3531:2876 3539:2884 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3531:2945 3539:2953 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3531:3053 3539:3061 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3531:3189 3539:3197 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3531:3403 3539:3411 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3531:3469 3539:3477 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3531:3502 3539:3510 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3531:3546 3539:3554 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3531:3687 3539:3695 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3531:3752 3539:3760 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3531:3802 3539:3810 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3531:3839 3539:3847 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3531:3859 3539:3867 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3531:3873 3539:3881 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3531:3879 3539:3887 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 3531:3922 3539:3930 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3531:3946 3539:3954 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3531:3951 3539:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3531:3993 3539:4001 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3531:4002 3539:4010 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3531:4011 3539:4019 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3531:4097 3539:4105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3531:4489 3539:4497 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:13 3608:21 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:174 3608:182 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:355 3608:363 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:457 3608:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:529 3608:537 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:531 3608:539 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:533 3608:541 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:535 3608:543 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:537 3608:545 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:539 3608:547 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:551 3608:559 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:579 3608:587 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:644 3608:652 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3600:665 3608:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:670 3608:678 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:766 3608:774 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:789 3608:797 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3600:865 3608:873 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:955 3608:963 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3600:1097 3608:1105 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3600:1099 3608:1107 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:1101 3608:1109 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:1112 3608:1120 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:1155 3608:1163 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:1172 3608:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:1216 3608:1224 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:1437 3608:1445 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:1460 3608:1468 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:1485 3608:1493 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3600:1490 3608:1498 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3600:1599 3608:1607 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:1634 3608:1642 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:1656 3608:1664 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:1804 3608:1812 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:1821 3608:1829 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:1901 3608:1909 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:1986 3608:1994 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:2055 3608:2063 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:2107 3608:2115 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:2111 3608:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:2201 3608:2209 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:2242 3608:2250 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:2257 3608:2265 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:2320 3608:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:2452 3608:2460 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:2458 3608:2466 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:2826 3608:2834 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:2945 3608:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:2948 3608:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:3320 3608:3328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:3403 3608:3411 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3600:3469 3608:3477 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:3502 3608:3510 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:3546 3608:3554 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:3596 3608:3604 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:3752 3608:3760 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:3802 3608:3810 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:3839 3608:3847 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:3859 3608:3867 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:3873 3608:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:3879 3608:3887 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:3922 3608:3930 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:3946 3608:3954 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3600:3951 3608:3959 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:3993 3608:4001 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:4002 3608:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:4011 3608:4019 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:4014 3608:4022 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:4063 3608:4071 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:4097 3608:4105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:4287 3608:4295 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:4335 3608:4343 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3600:4337 3608:4345 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:4339 3608:4347 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:4341 3608:4349 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:4343 3608:4351 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:4345 3608:4353 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:4347 3608:4355 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:4349 3608:4357 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:4357 3608:4365 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:4359 3608:4367 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3600:4489 3608:4497 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:13 3625:21 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3617:174 3625:182 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3617:336 3625:344 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3617:355 3625:363 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3617:457 3625:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:529 3625:537 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:539 3625:547 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:551 3625:559 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3617:644 3625:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:661 3625:669 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:665 3625:673 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:670 3625:678 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3617:673 3625:681 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:789 3625:797 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3617:914 3625:922 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3617:955 3625:963 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3617:1097 3625:1105 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3617:1155 3625:1163 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:1172 3625:1180 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3617:1216 3625:1224 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3617:1437 3625:1445 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3617:1485 3625:1493 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3617:1490 3625:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3617:1599 3625:1607 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:1634 3625:1642 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3617:1656 3625:1664 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:1821 3625:1829 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3617:1901 3625:1909 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:1986 3625:1994 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 3617:2055 3625:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:2107 3625:2115 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3617:2242 3625:2250 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:2320 3625:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:2361 3625:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:2452 3625:2460 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:2458 3625:2466 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3617:2523 3625:2531 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:2826 3625:2834 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3617:2876 3625:2884 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:2945 3625:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:2948 3625:2956 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3617:3137 3625:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:3293 3625:3301 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:3320 3625:3328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:3322 3625:3330 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:3403 3625:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:3469 3625:3477 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:3596 3625:3604 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:3752 3625:3760 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:3802 3625:3810 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3617:3839 3625:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:3859 3625:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:3922 3625:3930 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:3946 3625:3954 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3617:3951 3625:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:3993 3625:4001 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3617:4011 3625:4019 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:4014 3625:4022 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3617:4335 3625:4343 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:4359 3625:4367 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:4361 3625:4369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3617:4489 3625:4497 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:13 3676:21 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:355 3676:363 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:457 3676:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:508 3676:516 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:539 3676:547 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:551 3676:559 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:579 3676:587 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:644 3676:652 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:665 3676:673 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:670 3676:678 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:673 3676:681 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:789 3676:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:865 3676:873 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:914 3676:922 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:955 3676:963 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:1103 3676:1111 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:1112 3676:1120 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:1172 3676:1180 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:1216 3676:1224 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:1460 3676:1468 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:1485 3676:1493 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:1490 3676:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:1599 3676:1607 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:1631 3676:1639 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:1804 3676:1812 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:1842 3676:1850 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:1986 3676:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:2055 3676:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:2111 3676:2119 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:2242 3676:2250 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:2320 3676:2328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:2452 3676:2460 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:2458 3676:2466 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:2523 3676:2531 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3668:2826 3676:2834 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3668:2876 3676:2884 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:2945 3676:2953 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:2948 3676:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:3053 3676:3061 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:3200 3676:3208 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:3293 3676:3301 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:3403 3676:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:3469 3676:3477 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:3502 3676:3510 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:3546 3676:3554 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:3687 3676:3695 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:3752 3676:3760 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:3802 3676:3810 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:3839 3676:3847 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:3859 3676:3867 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:3873 3676:3881 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3668:3879 3676:3887 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:3922 3676:3930 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3668:3946 3676:3954 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:3951 3676:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:3993 3676:4001 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 3668:4002 3676:4010 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:4011 3676:4019 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:4014 3676:4022 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3668:4023 3676:4031 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3668:4097 3676:4105 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3668:4232 3676:4240 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3668:4489 3676:4497 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3677:13 3685:21 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:457 3685:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:508 3685:516 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:614 3685:622 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3677:644 3685:652 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3677:665 3685:673 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3677:673 3685:681 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:827 3685:835 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:865 3685:873 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3677:1055 3685:1063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:1103 3685:1111 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:1112 3685:1120 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3677:1155 3685:1163 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:1437 3685:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:1460 3685:1468 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:1490 3685:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3677:1599 3685:1607 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3677:1642 3685:1650 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:1656 3685:1664 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:1804 3685:1812 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3677:1842 3685:1850 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3677:2055 3685:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:2111 3685:2119 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3677:2201 3685:2209 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:2242 3685:2250 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3677:2257 3685:2265 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:2320 3685:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:2361 3685:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:2655 3685:2663 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:2793 3685:2801 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:2826 3685:2834 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:2876 3685:2884 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:2945 3685:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:2948 3685:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:3053 3685:3061 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3677:3137 3685:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:3189 3685:3197 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3677:3245 3685:3253 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:3403 3685:3411 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3677:3502 3685:3510 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:3546 3685:3554 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3677:3687 3685:3695 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:3752 3685:3760 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3677:3802 3685:3810 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:3839 3685:3847 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3677:3859 3685:3867 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3677:3873 3685:3881 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3677:3879 3685:3887 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3677:3922 3685:3930 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3677:3946 3685:3954 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:3993 3685:4001 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:4002 3685:4010 1 + 0 1 HSCKBG:MMCRKNB ssitesim alignGT 3677:4011 3685:4019 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3677:4014 3685:4022 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3677:4097 3685:4105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:4232 3685:4240 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3677:4489 3685:4497 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3686:13 3694:21 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3686:174 3694:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:457 3694:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:539 3694:547 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:551 3694:559 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:579 3694:587 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3686:614 3694:622 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3686:644 3694:652 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3686:661 3694:669 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:665 3694:673 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:670 3694:678 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3686:673 3694:681 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:766 3694:774 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:789 3694:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:827 3694:835 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:865 3694:873 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3686:914 3694:922 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:955 3694:963 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:1172 3694:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:1216 3694:1224 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3686:1485 3694:1493 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:1490 3694:1498 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:1599 3694:1607 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3686:1631 3694:1639 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:1656 3694:1664 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:1804 3694:1812 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3686:1986 3694:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:2055 3694:2063 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3686:2107 3694:2115 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:2111 3694:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:2201 3694:2209 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:2242 3694:2250 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:2257 3694:2265 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:2320 3694:2328 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3686:2452 3694:2460 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3686:2458 3694:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:2793 3694:2801 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:2826 3694:2834 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3686:2945 3694:2953 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 3686:2948 3694:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:3137 3694:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:3189 3694:3197 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3686:3245 3694:3253 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:3403 3694:3411 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3686:3546 3694:3554 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3686:3802 3694:3810 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:3839 3694:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:3859 3694:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:3873 3694:3881 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3686:3879 3694:3887 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3686:3922 3694:3930 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3686:3946 3694:3954 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3686:3951 3694:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:3993 3694:4001 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:4002 3694:4010 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3686:4011 3694:4019 1 + 0 1 HSCKBG:MMCRKNB ssitesim alignGT 3686:4014 3694:4022 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3686:4063 3694:4071 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:4232 3694:4240 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:4287 3694:4295 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3686:4489 3694:4497 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3689:13 3697:21 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 3689:174 3697:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:355 3697:363 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:508 3697:516 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3689:551 3697:559 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3689:614 3697:622 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:661 3697:669 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:670 3697:678 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3689:673 3697:681 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3689:789 3697:797 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3689:865 3697:873 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:914 3697:922 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:955 3697:963 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:1172 3697:1180 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3689:1216 3697:1224 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3689:1437 3697:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:1460 3697:1468 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:1485 3697:1493 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:1490 3697:1498 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:1599 3697:1607 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3689:1634 3697:1642 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3689:1842 3697:1850 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:1986 3697:1994 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3689:2111 3697:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:2320 3697:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:2458 3697:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:2523 3697:2531 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3689:2826 3697:2834 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:2876 3697:2884 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:2945 3697:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:2948 3697:2956 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3689:3137 3697:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:3189 3697:3197 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:3245 3697:3253 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:3293 3697:3301 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:3322 3697:3330 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:3403 3697:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:3469 3697:3477 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:3546 3697:3554 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:3687 3697:3695 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:3752 3697:3760 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3689:3802 3697:3810 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3689:3873 3697:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:3922 3697:3930 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:3946 3697:3954 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:3951 3697:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:3993 3697:4001 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3689:4002 3697:4010 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3689:4011 3697:4019 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3689:4014 3697:4022 1 + 0 1 HSCKBG:MMCRKNB ssitesim alignGT 3689:4023 3697:4031 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:4097 3697:4105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:4232 3697:4240 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3689:4489 3697:4497 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3698:93 3706:101 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3698:355 3706:363 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:508 3706:516 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:537 3706:545 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:539 3706:547 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:551 3706:559 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:665 3706:673 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:1097 3706:1105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:1103 3706:1111 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3698:1172 3706:1180 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:1460 3706:1468 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3698:1485 3706:1493 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:1490 3706:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3698:1842 3706:1850 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:1920 3706:1928 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:2055 3706:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:2111 3706:2119 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3698:2201 3706:2209 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3698:2320 3706:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:2361 3706:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:2458 3706:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:2945 3706:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:2948 3706:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:3322 3706:3330 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3698:3469 3706:3477 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:3839 3706:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:3859 3706:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:3873 3706:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:3951 3706:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:3993 3706:4001 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:4002 3706:4010 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:4014 3706:4022 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:4023 3706:4031 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 3698:4063 3706:4071 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:4097 3706:4105 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 3698:4232 3706:4240 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3698:4489 3706:4497 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3906:13 3914:21 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3906:336 3914:344 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3906:508 3914:516 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3906:539 3914:547 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3906:661 3914:669 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3906:665 3914:673 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3906:673 3914:681 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3906:865 3914:873 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3906:1103 3914:1111 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3906:1112 3914:1120 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3906:1460 3914:1468 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3906:1599 3914:1607 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3906:1986 3914:1994 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3906:2111 3914:2119 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3906:2320 3914:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3906:2452 3914:2460 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3906:2458 3914:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3906:2523 3914:2531 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3906:2793 3914:2801 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3906:2826 3914:2834 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3906:2945 3914:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3906:3245 3914:3253 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3906:3403 3914:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3906:3546 3914:3554 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3906:3596 3914:3604 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3906:3873 3914:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3906:3922 3914:3930 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3906:3946 3914:3954 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3906:3993 3914:4001 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3906:4002 3914:4010 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3906:4011 3914:4019 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3906:4014 3914:4022 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3906:4232 3914:4240 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 3906:4489 3914:4497 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3985:13 3993:21 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3985:457 3993:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:508 3993:516 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:551 3993:559 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3985:614 3993:622 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3985:661 3993:669 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:665 3993:673 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:670 3993:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:673 3993:681 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:789 3993:797 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:827 3993:835 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3985:865 3993:873 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:955 3993:963 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3985:1055 3993:1063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:1097 3993:1105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:1172 3993:1180 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3985:1490 3993:1498 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3985:1599 3993:1607 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3985:1634 3993:1642 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:1642 3993:1650 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3985:1656 3993:1664 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:1804 3993:1812 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:2055 3993:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:2111 3993:2119 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:2242 3993:2250 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:2320 3993:2328 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:2793 3993:2801 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:2876 3993:2884 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:2948 3993:2956 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 3985:3053 3993:3061 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3985:3189 3993:3197 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3985:3245 3993:3253 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3985:3293 3993:3301 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:3403 3993:3411 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:3546 3993:3554 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3985:3592 3993:3600 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:3802 3993:3810 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3985:3873 3993:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:3922 3993:3930 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:3951 3993:3959 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3985:3993 3993:4001 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:4002 3993:4010 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 3985:4011 3993:4019 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 3985:4014 3993:4022 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4059:13 4067:21 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4059:174 4067:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:336 4067:344 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 4059:355 4067:363 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4059:529 4067:537 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4059:531 4067:539 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:533 4067:541 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:535 4067:543 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:537 4067:545 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:539 4067:547 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4059:551 4067:559 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:661 4067:669 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4059:670 4067:678 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4059:789 4067:797 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4059:914 4067:922 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:955 4067:963 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:1097 4067:1105 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4059:1099 4067:1107 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:1101 4067:1109 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:1155 4067:1163 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4059:1172 4067:1180 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4059:1216 4067:1224 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4059:1437 4067:1445 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4059:1485 4067:1493 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 4059:1490 4067:1498 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:1634 4067:1642 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:1821 4067:1829 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 4059:1986 4067:1994 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 4059:2107 4067:2115 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 4059:2361 4067:2369 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:2458 4067:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:2826 4067:2834 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:2948 4067:2956 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:3137 4067:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:3322 4067:3330 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4059:3469 4067:3477 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:3596 4067:3604 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:3687 4067:3695 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:3802 4067:3810 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:3946 4067:3954 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4059:3993 4067:4001 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:4014 4067:4022 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4059:4335 4067:4343 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:4337 4067:4345 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:4339 4067:4347 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:4341 4067:4349 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:4343 4067:4351 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:4345 4067:4353 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:4347 4067:4355 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:4349 4067:4357 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:4357 4067:4365 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4059:4359 4067:4367 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4059:4361 4067:4369 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:93 4083:101 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4075:336 4083:344 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:355 4083:363 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4075:368 4083:376 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4075:457 4083:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4075:529 4083:537 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:531 4083:539 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:533 4083:541 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:535 4083:543 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:537 4083:545 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:539 4083:547 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:661 4083:669 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:665 4083:673 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4075:670 4083:678 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4075:812 4083:820 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4075:1097 4083:1105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4075:1099 4083:1107 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4075:1101 4083:1109 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 4075:1103 4083:1111 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:1155 4083:1163 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 4075:1437 4083:1445 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:1485 4083:1493 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:1821 4083:1829 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4075:1986 4083:1994 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:2055 4083:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4075:2107 4083:2115 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:2201 4083:2209 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4075:3137 4083:3145 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4075:3245 4083:3253 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:3320 4083:3328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:3322 4083:3330 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4075:3596 4083:3604 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4075:3687 4083:3695 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4075:3839 4083:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4075:3859 4083:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4075:3946 4083:3954 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:4023 4083:4031 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4075:4335 4083:4343 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4075:4337 4083:4345 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4075:4339 4083:4347 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:4341 4083:4349 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:4343 4083:4351 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:4345 4083:4353 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:4347 4083:4355 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:4349 4083:4357 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:4353 4083:4361 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4075:4357 4083:4365 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:4359 4083:4367 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4075:4361 4083:4369 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4099:13 4107:21 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 4099:174 4107:182 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:355 4107:363 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4099:457 4107:465 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:551 4107:559 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 4099:670 4107:678 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4099:673 4107:681 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:789 4107:797 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4099:914 4107:922 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4099:955 4107:963 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:1055 4107:1063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:1172 4107:1180 0.8 + 0 0.8 HSCKBG:MMCRKNB ssitesim alignGT 4099:1216 4107:1224 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4099:1437 4107:1445 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:1485 4107:1493 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:1490 4107:1498 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:1599 4107:1607 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4099:1631 4107:1639 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:1634 4107:1642 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:1642 4107:1650 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:1804 4107:1812 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:1842 4107:1850 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:1986 4107:1994 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4099:2055 4107:2063 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:2242 4107:2250 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:2320 4107:2328 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4099:2452 4107:2460 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:2458 4107:2466 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:2523 4107:2531 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4099:2826 4107:2834 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4099:2876 4107:2884 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 4099:2945 4107:2953 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:2948 4107:2956 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 4099:3053 4107:3061 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4099:3245 4107:3253 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:3293 4107:3301 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 4099:3322 4107:3330 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:3469 4107:3477 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4099:3687 4107:3695 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:3752 4107:3760 0.4 + 0 0.4 HSCKBG:MMCRKNB ssitesim alignGT 4099:3802 4107:3810 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 4099:3839 4107:3847 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:3859 4107:3867 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:3873 4107:3881 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:3879 4107:3887 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:3922 4107:3930 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 4099:3946 4107:3954 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:3951 4107:3959 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:3993 4107:4001 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 4099:4011 4107:4019 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:4014 4107:4022 0.6 + 0 0.6 HSCKBG:MMCRKNB ssitesim alignGT 4099:4097 4107:4105 0.2 + 0 0.2 HSCKBG:MMCRKNB ssitesim alignGT 4099:4489 4107:4497 0.2 + 0 0.2 gff2aplot-2.0.orig/examples/splice_sites/KCRB.AG.hs-mm.gff0000664000000000000000000071717607667662613023223 0ustar rootroot00000000000000HSCKBG:MMCRKNB ssitesim alignAG 30:408 46:424 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 30:752 46:768 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 30:787 46:803 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 30:925 46:941 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 30:1061 46:1077 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 30:1135 46:1151 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 30:1597 46:1613 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 30:1629 46:1645 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 30:1712 46:1728 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 30:2010 46:2026 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 30:2623 46:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 30:2642 46:2658 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 30:2715 46:2731 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 30:3525 46:3541 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 30:3636 46:3652 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 30:4246 46:4262 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 30:4317 46:4333 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 30:4383 46:4399 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 30:4386 46:4402 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 30:4458 46:4474 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 30:4499 46:4515 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 55:79 71:95 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 55:303 71:319 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 55:327 71:343 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 55:343 71:359 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 55:408 71:424 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 55:620 71:636 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 55:828 71:844 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:865 71:881 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 55:925 71:941 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:1007 71:1023 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:1061 71:1077 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 55:1081 71:1097 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:1085 71:1101 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:1330 71:1346 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 55:1571 71:1587 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:1597 71:1613 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 55:1629 71:1645 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 55:1680 71:1696 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 55:1712 71:1728 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:1912 71:1928 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:1929 71:1945 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:2010 71:2026 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 55:2017 71:2033 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 55:2074 71:2090 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:2229 71:2245 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 55:2398 71:2414 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:2642 71:2658 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:2715 71:2731 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 55:2803 71:2819 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 55:2810 71:2826 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:2813 71:2829 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 55:2863 71:2879 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:2931 71:2947 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 55:3078 71:3094 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:3095 71:3111 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 55:3125 71:3141 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:3251 71:3267 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:3435 71:3451 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:3587 71:3603 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:3636 71:3652 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 55:3654 71:3670 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 55:3813 71:3829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 55:3879 71:3895 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:3909 71:3925 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 55:3980 71:3996 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:4111 71:4127 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 55:4142 71:4158 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:4201 71:4217 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:4319 71:4335 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 55:4323 71:4339 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 55:4386 71:4402 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 55:4475 71:4491 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 55:4499 71:4515 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:79 119:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:177 119:193 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 103:303 119:319 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 103:343 119:359 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:436 119:452 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:439 119:455 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:620 119:636 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 103:865 119:881 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 103:1007 119:1023 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 103:1061 119:1077 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:1067 119:1083 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:1081 119:1097 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:1085 119:1101 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:1330 119:1346 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 103:1680 119:1696 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:1725 119:1741 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:1769 119:1785 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:1906 119:1922 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:1929 119:1945 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 103:2010 119:2026 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:2074 119:2090 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:2218 119:2234 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 103:2608 119:2624 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 103:2618 119:2634 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:2623 119:2639 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 103:2658 119:2674 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 103:2715 119:2731 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 103:2803 119:2819 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:2810 119:2826 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 103:2813 119:2829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:2846 119:2862 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:2863 119:2879 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:3078 119:3094 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:3095 119:3111 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:3166 119:3182 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 103:3365 119:3381 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:3435 119:3451 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:3511 119:3527 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 103:3587 119:3603 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:3636 119:3652 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:3660 119:3676 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 103:3879 119:3895 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:3909 119:3925 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 103:3980 119:3996 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 103:4082 119:4098 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 103:4142 119:4158 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 103:4201 119:4217 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 103:4223 119:4239 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 103:4246 119:4262 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 103:4317 119:4333 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 103:4323 119:4339 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 103:4499 119:4515 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 149:23 165:39 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 149:408 165:424 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 149:436 165:452 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 149:507 165:523 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 149:752 165:768 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 149:787 165:803 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 149:828 165:844 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 149:1007 165:1023 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 149:1061 165:1077 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 149:1081 165:1097 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 149:1680 165:1696 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 149:1725 165:1741 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 149:1769 165:1785 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 149:1869 165:1885 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 149:1906 165:1922 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 149:2218 165:2234 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 149:2306 165:2322 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 149:2398 165:2414 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 149:2608 165:2624 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 149:2618 165:2634 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 149:2623 165:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 149:2658 165:2674 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 149:2810 165:2826 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 149:2837 165:2853 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 149:2922 165:2938 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 149:3125 165:3141 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 149:3147 165:3163 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 149:3239 165:3255 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 149:3251 165:3267 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 149:3334 165:3350 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 149:3435 165:3451 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 149:3511 165:3527 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 149:3525 165:3541 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 149:3578 165:3594 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 149:3600 165:3616 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 149:3660 165:3676 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 149:3879 165:3895 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 149:4223 165:4239 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 149:4386 165:4402 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 161:79 177:95 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 161:303 177:319 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 161:327 177:343 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 161:343 177:359 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 161:408 177:424 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 161:436 177:452 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 161:439 177:455 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 161:925 177:941 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 161:1061 177:1077 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 161:1330 177:1346 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 161:1597 177:1613 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 161:1629 177:1645 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 161:1680 177:1696 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 161:1912 177:1928 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 161:1929 177:1945 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 161:2010 177:2026 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 161:2017 177:2033 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 161:2074 177:2090 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 161:2229 177:2245 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 161:2398 177:2414 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 161:2551 177:2567 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 161:2608 177:2624 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 161:2618 177:2634 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 161:2658 177:2674 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 161:2803 177:2819 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 161:2810 177:2826 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 161:2813 177:2829 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 161:2922 177:2938 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 161:2931 177:2947 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 161:3078 177:3094 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 161:3095 177:3111 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 161:3147 177:3163 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 161:3166 177:3182 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 161:3251 177:3267 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 161:3319 177:3335 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 161:3489 177:3505 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 161:3494 177:3510 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 161:3511 177:3527 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 161:3525 177:3541 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 161:3587 177:3603 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 161:3636 177:3652 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 161:3654 177:3670 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 161:3813 177:3829 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 161:3879 177:3895 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 161:3909 177:3925 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 161:3980 177:3996 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 161:4082 177:4098 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 161:4111 177:4127 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 161:4223 177:4239 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 161:4458 177:4474 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 161:4475 177:4491 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 161:4499 177:4515 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 168:23 184:39 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 168:79 184:95 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 168:303 184:319 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 168:408 184:424 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 168:436 184:452 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 168:620 184:636 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 168:1007 184:1023 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 168:1061 184:1077 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 168:1081 184:1097 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 168:1337 184:1353 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 168:1597 184:1613 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 168:1680 184:1696 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 168:1712 184:1728 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 168:1725 184:1741 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 168:1769 184:1785 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 168:1912 184:1928 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 168:1929 184:1945 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 168:2010 184:2026 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 168:2017 184:2033 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 168:2229 184:2245 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 168:2306 184:2322 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 168:2358 184:2374 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 168:2398 184:2414 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 168:2551 184:2567 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 168:2608 184:2624 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 168:2618 184:2634 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 168:2623 184:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 168:2715 184:2731 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 168:2803 184:2819 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 168:2810 184:2826 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 168:2922 184:2938 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 168:2931 184:2947 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 168:3095 184:3111 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 168:3147 184:3163 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 168:3166 184:3182 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 168:3239 184:3255 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 168:3251 184:3267 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 168:3511 184:3527 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 168:3587 184:3603 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 168:3636 184:3652 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 168:3660 184:3676 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 168:3813 184:3829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 168:3879 184:3895 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 168:3909 184:3925 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 168:4082 184:4098 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 168:4142 184:4158 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 168:4246 184:4262 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 168:4323 184:4339 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 168:4499 184:4515 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:23 209:39 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:79 209:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:100 209:116 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:177 209:193 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 193:343 209:359 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:752 209:768 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 193:828 209:844 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 193:865 209:881 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:1007 209:1023 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 193:1061 209:1077 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:1067 209:1083 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 193:1081 209:1097 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 193:1085 209:1101 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:1597 209:1613 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 193:1629 209:1645 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 193:1680 209:1696 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 193:1712 209:1728 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:1869 209:1885 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:2010 209:2026 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:2398 209:2414 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:2551 209:2567 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:2608 209:2624 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 193:2623 209:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:2642 209:2658 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 193:2863 209:2879 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 193:3078 209:3094 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:3095 209:3111 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:3147 209:3163 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:3166 209:3182 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 193:3239 209:3255 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 193:3295 209:3311 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:3334 209:3350 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 193:3435 209:3451 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:3578 209:3594 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:3654 209:3670 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:3879 209:3895 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 193:3980 209:3996 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:4142 209:4158 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:4246 209:4262 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:4317 209:4333 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:4323 209:4339 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:4383 209:4399 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 193:4386 209:4402 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 193:4458 209:4474 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 193:4475 209:4491 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:23 224:39 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:79 224:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 208:100 224:116 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 208:177 224:193 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 208:507 224:523 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 208:620 224:636 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 208:1007 224:1023 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:1061 224:1077 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:1067 224:1083 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 208:1081 224:1097 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:1085 224:1101 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:1337 224:1353 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:1376 224:1392 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:1571 224:1587 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:1597 224:1613 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 208:1629 224:1645 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 208:1725 224:1741 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:1869 224:1885 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:1912 224:1928 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 208:1929 224:1945 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 208:2010 224:2026 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 208:2074 224:2090 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 208:2139 224:2155 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 208:2218 224:2234 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 208:2229 224:2245 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:2306 224:2322 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 208:2358 224:2374 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 208:2398 224:2414 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 208:2551 224:2567 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:2608 224:2624 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 208:2618 224:2634 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 208:2623 224:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 208:2642 224:2658 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 208:2658 224:2674 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:2803 224:2819 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 208:2810 224:2826 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 208:2837 224:2853 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:2863 224:2879 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 208:2922 224:2938 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:2931 224:2947 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:3078 224:3094 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 208:3095 224:3111 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 208:3147 224:3163 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:3166 224:3182 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 208:3239 224:3255 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 208:3251 224:3267 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 208:3295 224:3311 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 208:3334 224:3350 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:3365 224:3381 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 208:3489 224:3505 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 208:3494 224:3510 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 208:3511 224:3527 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:3578 224:3594 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 208:3587 224:3603 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:3636 224:3652 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 208:3660 224:3676 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 208:3813 224:3829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 208:3909 224:3925 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 208:4082 224:4098 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:4111 224:4127 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 208:4317 224:4333 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 208:4323 224:4339 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 208:4383 224:4399 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 208:4458 224:4474 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 225:23 241:39 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 225:100 241:116 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 225:177 241:193 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 225:507 241:523 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 225:620 241:636 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 225:828 241:844 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 225:925 241:941 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 225:1067 241:1083 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 225:1081 241:1097 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 225:1085 241:1101 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 225:1337 241:1353 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 225:1376 241:1392 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 225:1597 241:1613 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 225:1912 241:1928 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 225:2010 241:2026 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 225:2218 241:2234 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 225:2229 241:2245 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 225:2358 241:2374 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 225:2608 241:2624 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 225:2623 241:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 225:2715 241:2731 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 225:2803 241:2819 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 225:2863 241:2879 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 225:3095 241:3111 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 225:3251 241:3267 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 225:3319 241:3335 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 225:3435 241:3451 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 225:3489 241:3505 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 225:3494 241:3510 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 225:3511 241:3527 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 225:3600 241:3616 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 225:3636 241:3652 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 225:3660 241:3676 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 225:3813 241:3829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 225:3909 241:3925 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 225:3980 241:3996 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 225:4082 241:4098 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 225:4111 241:4127 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 225:4142 241:4158 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 225:4223 241:4239 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 225:4246 241:4262 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 225:4317 241:4333 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 225:4323 241:4339 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 225:4386 241:4402 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 225:4458 241:4474 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 225:4475 241:4491 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 294:23 310:39 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 294:79 310:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:100 310:116 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 294:177 310:193 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:327 310:343 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 294:436 310:452 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 294:439 310:455 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 294:507 310:523 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:620 310:636 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 294:787 310:803 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:828 310:844 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 294:865 310:881 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:925 310:941 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:1007 310:1023 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 294:1081 310:1097 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 294:1135 310:1151 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:1330 310:1346 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:1376 310:1392 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 294:1597 310:1613 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 294:1680 310:1696 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 294:1712 310:1728 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 294:1912 310:1928 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 294:1929 310:1945 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 294:2074 310:2090 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 294:2139 310:2155 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 294:2229 310:2245 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:2306 310:2322 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 294:2358 310:2374 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:2551 310:2567 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 294:2618 310:2634 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:2642 310:2658 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:2658 310:2674 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:2715 310:2731 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 294:2810 310:2826 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 294:2813 310:2829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 294:2846 310:2862 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:2863 310:2879 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:2922 310:2938 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:2931 310:2947 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:3078 310:3094 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:3147 310:3163 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 294:3239 310:3255 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:3334 310:3350 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 294:3365 310:3381 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 294:3489 310:3505 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 294:3511 310:3527 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 294:3525 310:3541 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:3578 310:3594 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:3587 310:3603 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:3600 310:3616 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 294:3654 310:3670 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:3879 310:3895 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:3909 310:3925 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:3980 310:3996 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 294:4082 310:4098 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 294:4111 310:4127 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 294:4201 310:4217 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 294:4319 310:4335 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 294:4323 310:4339 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 294:4499 310:4515 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 304:100 320:116 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 304:327 320:343 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 304:408 320:424 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 304:436 320:452 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 304:439 320:455 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 304:620 320:636 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 304:752 320:768 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 304:865 320:881 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 304:1007 320:1023 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 304:1061 320:1077 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 304:1081 320:1097 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 304:1337 320:1353 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 304:1376 320:1392 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 304:1571 320:1587 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 304:1597 320:1613 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 304:1629 320:1645 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 304:1712 320:1728 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 304:1725 320:1741 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 304:1769 320:1785 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 304:1912 320:1928 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 304:1929 320:1945 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 304:2010 320:2026 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 304:2074 320:2090 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 304:2218 320:2234 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 304:2229 320:2245 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 304:2306 320:2322 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 304:2358 320:2374 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 304:2551 320:2567 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 304:2608 320:2624 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 304:2618 320:2634 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 304:2623 320:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 304:2715 320:2731 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 304:2803 320:2819 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 304:2810 320:2826 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 304:2813 320:2829 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 304:2837 320:2853 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 304:2846 320:2862 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 304:2863 320:2879 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 304:2922 320:2938 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 304:3078 320:3094 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 304:3125 320:3141 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 304:3147 320:3163 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 304:3166 320:3182 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 304:3334 320:3350 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 304:3489 320:3505 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 304:3511 320:3527 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 304:3578 320:3594 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 304:3587 320:3603 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 304:3600 320:3616 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 304:3654 320:3670 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 304:3879 320:3895 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 304:3980 320:3996 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 304:4082 320:4098 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 304:4111 320:4127 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 304:4246 320:4262 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:23 532:39 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 516:177 532:193 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:436 532:452 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 516:439 532:455 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:620 532:636 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 516:787 532:803 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 516:828 532:844 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 516:1007 532:1023 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 516:1067 532:1083 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 516:1081 532:1097 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 516:1085 532:1101 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:1135 532:1151 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 516:1330 532:1346 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 516:1337 532:1353 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:1376 532:1392 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:1680 532:1696 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 516:1712 532:1728 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 516:1725 532:1741 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:1869 532:1885 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:1906 532:1922 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 516:1912 532:1928 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 516:2074 532:2090 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:2218 532:2234 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:2398 532:2414 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:2551 532:2567 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 516:2608 532:2624 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 516:2623 532:2639 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 516:2658 532:2674 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:2803 532:2819 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 516:2810 532:2826 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:2813 532:2829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:2922 532:2938 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 516:3095 532:3111 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:3147 532:3163 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:3239 532:3255 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 516:3295 532:3311 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 516:3435 532:3451 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:3489 532:3505 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:3525 532:3541 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 516:3578 532:3594 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:3600 532:3616 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:3654 532:3670 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:3813 532:3829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 516:3879 532:3895 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 516:3909 532:3925 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:4082 532:4098 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 516:4142 532:4158 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 516:4323 532:4339 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:23 544:39 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:79 544:95 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 528:343 544:359 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:408 544:424 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 528:507 544:523 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:620 544:636 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 528:828 544:844 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:865 544:881 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 528:1007 544:1023 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 528:1061 544:1077 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 528:1081 544:1097 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:1085 544:1101 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 528:1135 544:1151 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 528:1330 544:1346 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:1337 544:1353 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 528:1597 544:1613 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 528:1680 544:1696 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 528:1712 544:1728 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 528:1769 544:1785 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 528:1869 544:1885 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:1929 544:1945 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:2010 544:2026 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 528:2017 544:2033 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:2074 544:2090 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:2218 544:2234 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 528:2306 544:2322 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:2358 544:2374 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 528:2608 544:2624 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:2618 544:2634 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:2623 544:2639 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 528:2658 544:2674 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:2803 544:2819 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 528:2810 544:2826 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:2813 544:2829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:2863 544:2879 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 528:3095 544:3111 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 528:3147 544:3163 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:3166 544:3182 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:3251 544:3267 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 528:3435 544:3451 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:3511 544:3527 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:3525 544:3541 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 528:3600 544:3616 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 528:3636 544:3652 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 528:3654 544:3670 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:3660 544:3676 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 528:3813 544:3829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 528:3879 544:3895 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:3909 544:3925 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 528:4082 544:4098 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 528:4142 544:4158 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 528:4246 544:4262 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:4317 544:4333 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 528:4383 544:4399 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 528:4386 544:4402 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 528:4475 544:4491 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 530:177 546:193 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 530:620 546:636 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 530:828 546:844 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 530:1067 546:1083 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 530:1081 546:1097 0.73 + 0 0.73 HSCKBG:MMCRKNB ssitesim alignAG 530:1085 546:1101 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 530:1330 546:1346 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 530:1376 546:1392 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 530:1597 546:1613 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 530:1712 546:1728 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 530:1906 546:1922 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 530:1929 546:1945 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 530:2010 546:2026 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 530:2074 546:2090 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 530:2358 546:2374 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 530:2551 546:2567 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 530:2608 546:2624 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 530:2803 546:2819 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 530:2810 546:2826 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 530:2863 546:2879 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 530:2922 546:2938 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 530:3125 546:3141 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 530:3239 546:3255 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 530:3295 546:3311 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 530:3365 546:3381 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 530:3435 546:3451 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 530:3489 546:3505 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 530:3511 546:3527 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 530:3525 546:3541 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 530:3578 546:3594 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 530:3636 546:3652 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 530:3909 546:3925 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 530:3980 546:3996 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 530:4111 546:4127 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 530:4317 546:4333 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 530:4319 546:4335 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 530:4323 546:4339 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 530:4475 546:4491 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:23 641:39 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 625:79 641:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:100 641:116 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 625:177 641:193 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 625:436 641:452 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 625:439 641:455 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 625:620 641:636 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 625:787 641:803 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:865 641:881 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 625:925 641:941 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:1007 641:1023 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:1061 641:1077 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 625:1081 641:1097 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:1135 641:1151 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:1330 641:1346 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:1337 641:1353 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:1376 641:1392 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 625:1597 641:1613 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 625:1629 641:1645 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:1680 641:1696 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 625:1725 641:1741 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:1906 641:1922 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:1929 641:1945 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:2139 641:2155 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 625:2306 641:2322 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 625:2358 641:2374 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 625:2398 641:2414 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:2618 641:2634 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 625:2642 641:2658 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:2658 641:2674 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:2810 641:2826 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 625:2837 641:2853 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:2922 641:2938 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:2931 641:2947 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:3147 641:3163 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 625:3166 641:3182 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 625:3239 641:3255 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 625:3319 641:3335 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 625:3489 641:3505 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:3511 641:3527 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:3578 641:3594 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:3587 641:3603 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 625:3600 641:3616 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:3660 641:3676 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:3813 641:3829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:3879 641:3895 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 625:4082 641:4098 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 625:4201 641:4217 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:4246 641:4262 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:4383 641:4399 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 625:4499 641:4515 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:303 785:319 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:327 785:343 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:343 785:359 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:408 785:424 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:436 785:452 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:507 785:523 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:620 785:636 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 769:787 785:803 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:828 785:844 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:925 785:941 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 769:1061 785:1077 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 769:1081 785:1097 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:1085 785:1101 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:1135 785:1151 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:1330 785:1346 0.73 + 0 0.73 HSCKBG:MMCRKNB ssitesim alignAG 769:1376 785:1392 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:1571 785:1587 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 769:1597 785:1613 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 769:1680 785:1696 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:1712 785:1728 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:1869 785:1885 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 769:1906 785:1922 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:1929 785:1945 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 769:2010 785:2026 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 769:2017 785:2033 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 769:2074 785:2090 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 769:2229 785:2245 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:2658 785:2674 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:2715 785:2731 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 769:2803 785:2819 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 769:2813 785:2829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 769:2931 785:2947 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:3078 785:3094 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:3095 785:3111 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 769:3147 785:3163 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:3166 785:3182 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:3295 785:3311 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 769:3319 785:3335 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:3435 785:3451 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 769:3489 785:3505 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:3525 785:3541 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:3636 785:3652 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 769:3654 785:3670 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 769:3813 785:3829 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 769:3909 785:3925 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 769:4082 785:4098 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 769:4111 785:4127 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 769:4142 785:4158 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 769:4201 785:4217 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 769:4223 785:4239 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:4246 785:4262 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 769:4317 785:4333 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:4319 785:4335 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:4386 785:4402 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:4475 785:4491 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 769:4499 785:4515 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1120:23 1136:39 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1120:177 1136:193 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1120:303 1136:319 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1120:327 1136:343 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1120:343 1136:359 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1120:408 1136:424 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1120:436 1136:452 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1120:439 1136:455 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1120:620 1136:636 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1120:787 1136:803 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1120:828 1136:844 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1120:865 1136:881 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1120:925 1136:941 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1120:1007 1136:1023 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1120:1061 1136:1077 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1120:1081 1136:1097 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1120:1085 1136:1101 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1120:1135 1136:1151 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1120:1330 1136:1346 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1120:1337 1136:1353 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1120:1597 1136:1613 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1120:1680 1136:1696 0.64 + 0 0.64 HSCKBG:MMCRKNB ssitesim alignAG 1120:1712 1136:1728 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1120:1725 1136:1741 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1120:1769 1136:1785 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1120:1869 1136:1885 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1120:1906 1136:1922 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1120:1912 1136:1928 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1120:1929 1136:1945 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1120:2010 1136:2026 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1120:2074 1136:2090 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1120:2218 1136:2234 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1120:2229 1136:2245 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1120:2306 1136:2322 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1120:2358 1136:2374 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1120:2398 1136:2414 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1120:2608 1136:2624 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1120:2618 1136:2634 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1120:2642 1136:2658 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1120:2715 1136:2731 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1120:2803 1136:2819 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1120:2810 1136:2826 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1120:2813 1136:2829 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1120:2863 1136:2879 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1120:2922 1136:2938 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1120:3078 1136:3094 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1120:3095 1136:3111 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1120:3166 1136:3182 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1120:3251 1136:3267 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1120:3319 1136:3335 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1120:3334 1136:3350 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1120:3435 1136:3451 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1120:3489 1136:3505 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1120:3494 1136:3510 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1120:3511 1136:3527 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1120:3578 1136:3594 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1120:3587 1136:3603 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1120:3600 1136:3616 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1120:3636 1136:3652 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1120:3660 1136:3676 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1120:3813 1136:3829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1120:3879 1136:3895 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1120:3909 1136:3925 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 1120:3980 1136:3996 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1120:4082 1136:4098 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1120:4111 1136:4127 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1120:4142 1136:4158 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1120:4201 1136:4217 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1120:4223 1136:4239 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1120:4323 1136:4339 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1120:4386 1136:4402 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1120:4475 1136:4491 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1120:4499 1136:4515 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1149:23 1165:39 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1149:79 1165:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1149:327 1165:343 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1149:436 1165:452 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1149:439 1165:455 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1149:620 1165:636 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1149:787 1165:803 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1149:1085 1165:1101 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1149:1330 1165:1346 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1149:1376 1165:1392 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1149:1680 1165:1696 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1149:1712 1165:1728 1.00 + 0 1.00 HSCKBG:MMCRKNB ssitesim alignAG 1149:1769 1165:1785 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1149:1906 1165:1922 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1149:1912 1165:1928 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1149:1929 1165:1945 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1149:2010 1165:2026 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1149:2017 1165:2033 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1149:2074 1165:2090 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1149:2358 1165:2374 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1149:2398 1165:2414 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1149:2551 1165:2567 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1149:2642 1165:2658 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1149:2715 1165:2731 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1149:2803 1165:2819 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1149:2810 1165:2826 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1149:2813 1165:2829 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1149:2837 1165:2853 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1149:2846 1165:2862 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1149:2922 1165:2938 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1149:3078 1165:3094 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1149:3095 1165:3111 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1149:3125 1165:3141 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1149:3166 1165:3182 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1149:3239 1165:3255 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1149:3295 1165:3311 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1149:3334 1165:3350 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1149:3365 1165:3381 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1149:3435 1165:3451 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1149:3489 1165:3505 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1149:3525 1165:3541 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1149:3578 1165:3594 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1149:3636 1165:3652 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1149:3654 1165:3670 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1149:3813 1165:3829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1149:4111 1165:4127 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1149:4319 1165:4335 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1149:4383 1165:4399 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1149:4386 1165:4402 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1306:79 1322:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:100 1322:116 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1306:177 1322:193 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1306:327 1322:343 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:343 1322:359 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:408 1322:424 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:507 1322:523 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1306:620 1322:636 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:752 1322:768 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:787 1322:803 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1306:828 1322:844 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:1061 1322:1077 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:1067 1322:1083 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:1081 1322:1097 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:1085 1322:1101 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:1330 1322:1346 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1306:1571 1322:1587 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:1597 1322:1613 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1306:1712 1322:1728 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:1725 1322:1741 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:1869 1322:1885 0.82 + 0 0.82 HSCKBG:MMCRKNB ssitesim alignAG 1306:1929 1322:1945 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1306:2074 1322:2090 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1306:2139 1322:2155 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1306:2218 1322:2234 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:2229 1322:2245 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1306:2358 1322:2374 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:2398 1322:2414 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:2551 1322:2567 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1306:2618 1322:2634 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:2642 1322:2658 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:2658 1322:2674 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1306:2810 1322:2826 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:2846 1322:2862 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:2863 1322:2879 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:2922 1322:2938 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1306:2931 1322:2947 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:3095 1322:3111 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1306:3125 1322:3141 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1306:3147 1322:3163 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1306:3251 1322:3267 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:3295 1322:3311 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1306:3334 1322:3350 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1306:3365 1322:3381 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:3435 1322:3451 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1306:3489 1322:3505 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1306:3511 1322:3527 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:3578 1322:3594 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1306:3636 1322:3652 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:3654 1322:3670 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1306:4317 1322:4333 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1306:4383 1322:4399 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1306:4386 1322:4402 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1310:100 1326:116 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1310:177 1326:193 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1310:343 1326:359 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1310:752 1326:768 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1310:828 1326:844 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1310:865 1326:881 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1310:1007 1326:1023 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1310:1067 1326:1083 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1310:1081 1326:1097 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1310:1085 1326:1101 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1310:1337 1326:1353 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1310:1376 1326:1392 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1310:1571 1326:1587 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1310:1680 1326:1696 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1310:1769 1326:1785 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1310:1869 1326:1885 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1310:1912 1326:1928 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1310:2074 1326:2090 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1310:2218 1326:2234 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1310:2306 1326:2322 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1310:2358 1326:2374 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1310:2551 1326:2567 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1310:2642 1326:2658 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1310:2863 1326:2879 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1310:3078 1326:3094 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1310:3095 1326:3111 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1310:3125 1326:3141 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1310:3166 1326:3182 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1310:3239 1326:3255 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1310:3334 1326:3350 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1310:3435 1326:3451 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1310:3489 1326:3505 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1310:3494 1326:3510 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1310:3600 1326:3616 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1310:3879 1326:3895 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1310:4142 1326:4158 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1310:4319 1326:4335 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1310:4323 1326:4339 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1310:4458 1326:4474 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1375:79 1391:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1375:177 1391:193 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1375:343 1391:359 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1375:436 1391:452 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1375:439 1391:455 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1375:620 1391:636 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1375:828 1391:844 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1375:1007 1391:1023 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1375:1061 1391:1077 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1375:1067 1391:1083 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1375:1081 1391:1097 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1375:1085 1391:1101 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 1375:1330 1391:1346 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1375:1337 1391:1353 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1375:1376 1391:1392 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1375:1571 1391:1587 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1375:1597 1391:1613 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1375:1629 1391:1645 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1375:1680 1391:1696 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1375:1712 1391:1728 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1375:1725 1391:1741 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1375:1769 1391:1785 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1375:1906 1391:1922 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1375:1929 1391:1945 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1375:2010 1391:2026 0.64 + 0 0.64 HSCKBG:MMCRKNB ssitesim alignAG 1375:2074 1391:2090 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1375:2218 1391:2234 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1375:2229 1391:2245 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1375:2358 1391:2374 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1375:2398 1391:2414 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1375:2608 1391:2624 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1375:2618 1391:2634 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1375:2623 1391:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1375:2642 1391:2658 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1375:2715 1391:2731 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1375:2803 1391:2819 0.64 + 0 0.64 HSCKBG:MMCRKNB ssitesim alignAG 1375:2810 1391:2826 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1375:2813 1391:2829 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1375:2863 1391:2879 0.64 + 0 0.64 HSCKBG:MMCRKNB ssitesim alignAG 1375:3078 1391:3094 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1375:3095 1391:3111 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1375:3166 1391:3182 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1375:3251 1391:3267 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1375:3334 1391:3350 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1375:3365 1391:3381 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1375:3435 1391:3451 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1375:3489 1391:3505 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1375:3494 1391:3510 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1375:3511 1391:3527 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1375:3578 1391:3594 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1375:3587 1391:3603 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1375:3600 1391:3616 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1375:3636 1391:3652 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1375:3909 1391:3925 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1375:3980 1391:3996 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1375:4082 1391:4098 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1375:4111 1391:4127 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1375:4142 1391:4158 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1375:4201 1391:4217 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1375:4223 1391:4239 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1375:4317 1391:4333 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1375:4319 1391:4335 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1375:4323 1391:4339 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1375:4383 1391:4399 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1375:4386 1391:4402 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1375:4458 1391:4474 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1375:4475 1391:4491 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1381:79 1397:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1381:100 1397:116 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1381:177 1397:193 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1381:327 1397:343 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1381:436 1397:452 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1381:439 1397:455 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1381:620 1397:636 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1381:828 1397:844 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1381:925 1397:941 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1381:1007 1397:1023 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1381:1061 1397:1077 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1381:1067 1397:1083 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1381:1081 1397:1097 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1381:1085 1397:1101 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1381:1330 1397:1346 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1381:1337 1397:1353 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1381:1376 1397:1392 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1381:1571 1397:1587 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1381:1597 1397:1613 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1381:1629 1397:1645 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1381:1680 1397:1696 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1381:1712 1397:1728 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1381:1725 1397:1741 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1381:1769 1397:1785 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1381:1906 1397:1922 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1381:1912 1397:1928 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1381:1929 1397:1945 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1381:2010 1397:2026 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1381:2074 1397:2090 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1381:2218 1397:2234 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1381:2229 1397:2245 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1381:2306 1397:2322 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1381:2358 1397:2374 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1381:2398 1397:2414 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1381:2551 1397:2567 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1381:2608 1397:2624 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1381:2642 1397:2658 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1381:2803 1397:2819 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1381:2810 1397:2826 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1381:2813 1397:2829 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1381:2837 1397:2853 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1381:2846 1397:2862 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1381:2863 1397:2879 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1381:2931 1397:2947 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1381:3078 1397:3094 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1381:3095 1397:3111 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1381:3147 1397:3163 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1381:3295 1397:3311 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1381:3334 1397:3350 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1381:3489 1397:3505 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1381:3511 1397:3527 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1381:3578 1397:3594 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1381:3587 1397:3603 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1381:3636 1397:3652 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1381:3660 1397:3676 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1381:3813 1397:3829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1381:3909 1397:3925 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1381:3980 1397:3996 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1381:4082 1397:4098 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1381:4111 1397:4127 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1381:4201 1397:4217 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1381:4323 1397:4339 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1381:4475 1397:4491 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1381:4499 1397:4515 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:79 1406:95 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1390:100 1406:116 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1390:343 1406:359 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:439 1406:455 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1390:787 1406:803 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:925 1406:941 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1390:1061 1406:1077 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1390:1067 1406:1083 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:1337 1406:1353 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1390:1571 1406:1587 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:1629 1406:1645 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1390:1712 1406:1728 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:1725 1406:1741 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:1769 1406:1785 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:1869 1406:1885 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:1912 1406:1928 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1390:2010 1406:2026 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1390:2017 1406:2033 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1390:2074 1406:2090 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:2218 1406:2234 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:2229 1406:2245 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:2306 1406:2322 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:2358 1406:2374 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1390:2398 1406:2414 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1390:2608 1406:2624 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1390:2642 1406:2658 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:2803 1406:2819 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1390:2810 1406:2826 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1390:2837 1406:2853 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:2846 1406:2862 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:2863 1406:2879 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1390:2922 1406:2938 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:2931 1406:2947 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1390:3095 1406:3111 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:3147 1406:3163 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1390:3166 1406:3182 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1390:3239 1406:3255 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1390:3251 1406:3267 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:3319 1406:3335 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:3494 1406:3510 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1390:3511 1406:3527 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1390:3578 1406:3594 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:3587 1406:3603 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1390:3636 1406:3652 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:3813 1406:3829 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1390:3879 1406:3895 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1390:4111 1406:4127 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1390:4317 1406:4333 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:4383 1406:4399 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:4458 1406:4474 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1390:4475 1406:4491 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1390:4499 1406:4515 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1393:79 1409:95 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1393:177 1409:193 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1393:343 1409:359 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1393:408 1409:424 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1393:436 1409:452 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1393:439 1409:455 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1393:787 1409:803 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1393:828 1409:844 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1393:1007 1409:1023 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1393:1061 1409:1077 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1393:1085 1409:1101 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1393:1330 1409:1346 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1393:1597 1409:1613 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1393:1629 1409:1645 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1393:1680 1409:1696 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1393:1712 1409:1728 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1393:1769 1409:1785 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1393:1869 1409:1885 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1393:1906 1409:1922 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1393:2229 1409:2245 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1393:2398 1409:2414 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1393:2551 1409:2567 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1393:2608 1409:2624 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1393:2618 1409:2634 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1393:2623 1409:2639 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1393:2642 1409:2658 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1393:2803 1409:2819 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1393:2813 1409:2829 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1393:3095 1409:3111 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1393:3147 1409:3163 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1393:3166 1409:3182 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1393:3239 1409:3255 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1393:3251 1409:3267 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1393:3511 1409:3527 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1393:3525 1409:3541 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1393:3600 1409:3616 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1393:3813 1409:3829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1393:3879 1409:3895 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1393:3909 1409:3925 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1393:3980 1409:3996 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1393:4111 1409:4127 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1393:4223 1409:4239 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1393:4386 1409:4402 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:79 1427:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1411:100 1427:116 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:177 1427:193 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:343 1427:359 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1411:436 1427:452 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:439 1427:455 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:620 1427:636 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:752 1427:768 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1411:828 1427:844 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1411:925 1427:941 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1411:1007 1427:1023 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1411:1061 1427:1077 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1411:1067 1427:1083 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1411:1081 1427:1097 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1411:1085 1427:1101 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1411:1330 1427:1346 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:1376 1427:1392 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:1571 1427:1587 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1411:1597 1427:1613 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:1629 1427:1645 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:1680 1427:1696 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:1712 1427:1728 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:1769 1427:1785 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1411:1869 1427:1885 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1411:1912 1427:1928 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:1929 1427:1945 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1411:2010 1427:2026 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1411:2017 1427:2033 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:2074 1427:2090 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1411:2229 1427:2245 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:2398 1427:2414 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1411:2608 1427:2624 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1411:2642 1427:2658 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:2803 1427:2819 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1411:2810 1427:2826 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1411:2813 1427:2829 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1411:2837 1427:2853 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1411:2846 1427:2862 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1411:2863 1427:2879 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:2922 1427:2938 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1411:3078 1427:3094 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 1411:3095 1427:3111 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:3125 1427:3141 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:3166 1427:3182 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1411:3334 1427:3350 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:3435 1427:3451 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1411:3489 1427:3505 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1411:3494 1427:3510 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:3578 1427:3594 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1411:3587 1427:3603 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1411:3636 1427:3652 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:3909 1427:3925 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:4111 1427:4127 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1411:4142 1427:4158 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1411:4223 1427:4239 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1411:4319 1427:4335 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1411:4323 1427:4339 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1411:4386 1427:4402 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1411:4458 1427:4474 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1411:4475 1427:4491 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1448:23 1464:39 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1448:79 1464:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:100 1464:116 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1448:177 1464:193 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1448:327 1464:343 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:436 1464:452 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:439 1464:455 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1448:620 1464:636 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1448:752 1464:768 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:787 1464:803 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:828 1464:844 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1448:1007 1464:1023 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:1061 1464:1077 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:1067 1464:1083 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1448:1081 1464:1097 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1448:1085 1464:1101 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1448:1330 1464:1346 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:1337 1464:1353 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:1376 1464:1392 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1448:1597 1464:1613 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:1680 1464:1696 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1448:1712 1464:1728 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1448:1725 1464:1741 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:1869 1464:1885 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:1906 1464:1922 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1448:1912 1464:1928 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1448:1929 1464:1945 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1448:2010 1464:2026 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1448:2074 1464:2090 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 1448:2139 1464:2155 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:2218 1464:2234 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1448:2229 1464:2245 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1448:2306 1464:2322 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:2358 1464:2374 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1448:2398 1464:2414 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1448:2551 1464:2567 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1448:2608 1464:2624 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1448:2618 1464:2634 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1448:2623 1464:2639 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1448:2642 1464:2658 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1448:2658 1464:2674 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:2715 1464:2731 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:2803 1464:2819 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1448:2810 1464:2826 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1448:2813 1464:2829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1448:2863 1464:2879 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 1448:2922 1464:2938 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1448:2931 1464:2947 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1448:3078 1464:3094 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:3095 1464:3111 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1448:3125 1464:3141 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1448:3147 1464:3163 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1448:3251 1464:3267 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:3295 1464:3311 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1448:3334 1464:3350 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1448:3365 1464:3381 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1448:3489 1464:3505 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1448:3494 1464:3510 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1448:3511 1464:3527 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1448:3525 1464:3541 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1448:3578 1464:3594 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1448:3587 1464:3603 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:3600 1464:3616 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1448:3636 1464:3652 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1448:3654 1464:3670 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:3660 1464:3676 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:3813 1464:3829 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1448:3909 1464:3925 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1448:3980 1464:3996 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1448:4082 1464:4098 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1448:4111 1464:4127 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1448:4317 1464:4333 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1448:4319 1464:4335 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:4383 1464:4399 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1448:4386 1464:4402 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1448:4475 1464:4491 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1603:79 1619:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1603:100 1619:116 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:177 1619:193 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:303 1619:319 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1603:327 1619:343 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1603:343 1619:359 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1603:408 1619:424 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1603:436 1619:452 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1603:439 1619:455 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:507 1619:523 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1603:620 1619:636 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1603:752 1619:768 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:828 1619:844 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1603:925 1619:941 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:1007 1619:1023 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:1081 1619:1097 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1603:1085 1619:1101 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1603:1330 1619:1346 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:1337 1619:1353 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1603:1376 1619:1392 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1603:1571 1619:1587 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1603:1597 1619:1613 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1603:1629 1619:1645 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1603:1680 1619:1696 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1603:1712 1619:1728 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1603:1725 1619:1741 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1603:1769 1619:1785 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1603:1869 1619:1885 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1603:1906 1619:1922 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1603:1912 1619:1928 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1603:1929 1619:1945 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1603:2010 1619:2026 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1603:2017 1619:2033 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:2074 1619:2090 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1603:2139 1619:2155 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:2229 1619:2245 0.91 + 0 0.91 HSCKBG:MMCRKNB ssitesim alignAG 1603:2306 1619:2322 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:2358 1619:2374 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1603:2398 1619:2414 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1603:2551 1619:2567 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:2608 1619:2624 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1603:2618 1619:2634 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:2642 1619:2658 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1603:2658 1619:2674 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1603:2803 1619:2819 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1603:2810 1619:2826 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1603:2813 1619:2829 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1603:2846 1619:2862 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:2863 1619:2879 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:2922 1619:2938 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1603:2931 1619:2947 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:3078 1619:3094 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:3095 1619:3111 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1603:3125 1619:3141 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1603:3147 1619:3163 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:3251 1619:3267 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1603:3295 1619:3311 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:3334 1619:3350 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:3435 1619:3451 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:3489 1619:3505 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1603:3494 1619:3510 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:3511 1619:3527 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1603:3578 1619:3594 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1603:3587 1619:3603 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1603:3636 1619:3652 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1603:3660 1619:3676 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1603:3909 1619:3925 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1603:3980 1619:3996 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1603:4111 1619:4127 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1603:4201 1619:4217 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:4323 1619:4339 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1603:4386 1619:4402 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1603:4475 1619:4491 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:23 1691:39 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1675:79 1691:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1675:100 1691:116 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:177 1691:193 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1675:303 1691:319 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1675:408 1691:424 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1675:439 1691:455 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1675:507 1691:523 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:620 1691:636 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1675:752 1691:768 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1675:828 1691:844 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:865 1691:881 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1675:925 1691:941 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:1007 1691:1023 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1675:1061 1691:1077 0.64 + 0 0.64 HSCKBG:MMCRKNB ssitesim alignAG 1675:1081 1691:1097 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1675:1085 1691:1101 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:1135 1691:1151 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:1337 1691:1353 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:1571 1691:1587 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1675:1597 1691:1613 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1675:1629 1691:1645 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:1680 1691:1696 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:1725 1691:1741 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1675:1869 1691:1885 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1675:1912 1691:1928 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1675:1929 1691:1945 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:2010 1691:2026 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1675:2074 1691:2090 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1675:2139 1691:2155 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1675:2218 1691:2234 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:2229 1691:2245 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:2306 1691:2322 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1675:2358 1691:2374 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:2398 1691:2414 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:2608 1691:2624 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1675:2618 1691:2634 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1675:2642 1691:2658 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1675:2715 1691:2731 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1675:2803 1691:2819 0.64 + 0 0.64 HSCKBG:MMCRKNB ssitesim alignAG 1675:2810 1691:2826 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1675:2813 1691:2829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1675:2837 1691:2853 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1675:2863 1691:2879 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 1675:2922 1691:2938 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:2931 1691:2947 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1675:3078 1691:3094 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:3095 1691:3111 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:3166 1691:3182 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1675:3251 1691:3267 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1675:3319 1691:3335 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1675:3365 1691:3381 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:3435 1691:3451 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1675:3489 1691:3505 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:3494 1691:3510 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1675:3511 1691:3527 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1675:3525 1691:3541 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:3578 1691:3594 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1675:3587 1691:3603 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1675:3600 1691:3616 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:3636 1691:3652 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1675:3660 1691:3676 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:3813 1691:3829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1675:3909 1691:3925 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1675:3980 1691:3996 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1675:4082 1691:4098 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1675:4111 1691:4127 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1675:4142 1691:4158 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1675:4223 1691:4239 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:4317 1691:4333 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1675:4323 1691:4339 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1675:4383 1691:4399 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1675:4386 1691:4402 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1675:4458 1691:4474 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1675:4475 1691:4491 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1767:23 1783:39 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1767:79 1783:95 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1767:177 1783:193 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1767:327 1783:343 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1767:343 1783:359 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1767:436 1783:452 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1767:507 1783:523 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1767:620 1783:636 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1767:925 1783:941 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1767:1007 1783:1023 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1767:1061 1783:1077 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1767:1085 1783:1101 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1767:1330 1783:1346 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1767:1337 1783:1353 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1767:1376 1783:1392 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1767:1571 1783:1587 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1767:1629 1783:1645 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1767:1680 1783:1696 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1767:1712 1783:1728 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1767:1769 1783:1785 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1767:1869 1783:1885 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1767:1906 1783:1922 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1767:1912 1783:1928 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1767:2010 1783:2026 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1767:2074 1783:2090 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1767:2139 1783:2155 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1767:2218 1783:2234 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1767:2229 1783:2245 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1767:2398 1783:2414 1.00 + 0 1.00 HSCKBG:MMCRKNB ssitesim alignAG 1767:2551 1783:2567 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1767:2608 1783:2624 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1767:2618 1783:2634 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1767:2642 1783:2658 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1767:2658 1783:2674 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1767:2803 1783:2819 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1767:2810 1783:2826 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1767:2813 1783:2829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1767:2846 1783:2862 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1767:2863 1783:2879 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1767:2922 1783:2938 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1767:2931 1783:2947 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1767:3078 1783:3094 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1767:3095 1783:3111 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1767:3147 1783:3163 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1767:3166 1783:3182 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1767:3251 1783:3267 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1767:3295 1783:3311 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1767:3334 1783:3350 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1767:3365 1783:3381 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1767:3435 1783:3451 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1767:3494 1783:3510 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1767:3578 1783:3594 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1767:3587 1783:3603 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1767:3636 1783:3652 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1767:3813 1783:3829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1767:3909 1783:3925 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1767:4111 1783:4127 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1767:4201 1783:4217 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1767:4319 1783:4335 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1767:4386 1783:4402 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1767:4458 1783:4474 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1767:4475 1783:4491 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1987:23 2003:39 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1987:79 2003:95 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1987:100 2003:116 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:177 2003:193 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1987:436 2003:452 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:439 2003:455 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1987:620 2003:636 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1987:1007 2003:1023 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1987:1061 2003:1077 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1987:1067 2003:1083 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:1081 2003:1097 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:1085 2003:1101 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:1330 2003:1346 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:1337 2003:1353 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:1376 2003:1392 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:1571 2003:1587 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1987:1680 2003:1696 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1987:1712 2003:1728 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1987:1769 2003:1785 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1987:1906 2003:1922 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:1912 2003:1928 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1987:1929 2003:1945 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:2010 2003:2026 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1987:2017 2003:2033 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1987:2074 2003:2090 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1987:2218 2003:2234 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1987:2229 2003:2245 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1987:2306 2003:2322 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1987:2358 2003:2374 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1987:2398 2003:2414 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1987:2551 2003:2567 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:2608 2003:2624 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:2623 2003:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1987:2642 2003:2658 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:2803 2003:2819 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1987:2810 2003:2826 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 1987:2813 2003:2829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:2837 2003:2853 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1987:2863 2003:2879 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1987:2922 2003:2938 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1987:2931 2003:2947 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:3078 2003:3094 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:3095 2003:3111 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1987:3147 2003:3163 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1987:3166 2003:3182 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1987:3239 2003:3255 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1987:3295 2003:3311 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1987:3334 2003:3350 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:3489 2003:3505 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:3494 2003:3510 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1987:3578 2003:3594 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:3587 2003:3603 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1987:3636 2003:3652 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:3813 2003:3829 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 1987:3879 2003:3895 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1987:3909 2003:3925 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1987:4082 2003:4098 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:4111 2003:4127 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 1987:4317 2003:4333 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 1987:4319 2003:4335 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:4383 2003:4399 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 1987:4475 2003:4491 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2073:177 2089:193 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2073:327 2089:343 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:436 2089:452 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:620 2089:636 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:752 2089:768 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2073:787 2089:803 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:828 2089:844 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2073:865 2089:881 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:1067 2089:1083 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2073:1081 2089:1097 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2073:1085 2089:1101 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2073:1330 2089:1346 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:1337 2089:1353 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:1376 2089:1392 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2073:1571 2089:1587 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2073:1597 2089:1613 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2073:1629 2089:1645 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:1712 2089:1728 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:1725 2089:1741 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:1769 2089:1785 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:1869 2089:1885 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:1906 2089:1922 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:1929 2089:1945 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2073:2010 2089:2026 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2073:2017 2089:2033 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:2074 2089:2090 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:2229 2089:2245 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2073:2358 2089:2374 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:2551 2089:2567 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2073:2608 2089:2624 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:2623 2089:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:2803 2089:2819 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2073:2810 2089:2826 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2073:2813 2089:2829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2073:2863 2089:2879 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2073:3095 2089:3111 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2073:3125 2089:3141 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:3147 2089:3163 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2073:3334 2089:3350 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2073:3489 2089:3505 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2073:3511 2089:3527 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:3587 2089:3603 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:3636 2089:3652 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2073:3813 2089:3829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2073:3879 2089:3895 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2073:3909 2089:3925 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2073:3980 2089:3996 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:4111 2089:4127 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2073:4142 2089:4158 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:4223 2089:4239 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:4317 2089:4333 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:4319 2089:4335 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:4383 2089:4399 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:4386 2089:4402 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2073:4458 2089:4474 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2073:4475 2089:4491 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:23 2208:39 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2192:177 2208:193 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2192:343 2208:359 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2192:439 2208:455 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2192:507 2208:523 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:620 2208:636 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2192:828 2208:844 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:1061 2208:1077 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:1067 2208:1083 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2192:1081 2208:1097 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2192:1085 2208:1101 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2192:1135 2208:1151 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:1571 2208:1587 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:1680 2208:1696 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:1712 2208:1728 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2192:1725 2208:1741 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:1769 2208:1785 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:1869 2208:1885 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2192:1906 2208:1922 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2192:1929 2208:1945 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:2010 2208:2026 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2192:2017 2208:2033 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:2074 2208:2090 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2192:2218 2208:2234 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2192:2229 2208:2245 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2192:2398 2208:2414 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2192:2608 2208:2624 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2192:2642 2208:2658 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:2803 2208:2819 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2192:2810 2208:2826 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:2813 2208:2829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:2837 2208:2853 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:2863 2208:2879 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2192:2922 2208:2938 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:3078 2208:3094 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2192:3095 2208:3111 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2192:3125 2208:3141 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:3166 2208:3182 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2192:3239 2208:3255 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2192:3251 2208:3267 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2192:3334 2208:3350 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2192:3365 2208:3381 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:3435 2208:3451 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2192:3489 2208:3505 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2192:3494 2208:3510 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2192:3525 2208:3541 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2192:3578 2208:3594 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 2192:3587 2208:3603 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:3636 2208:3652 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:3909 2208:3925 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2192:3980 2208:3996 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2192:4111 2208:4127 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2192:4142 2208:4158 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:4223 2208:4239 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:4317 2208:4333 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2192:4383 2208:4399 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2192:4386 2208:4402 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2192:4475 2208:4491 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2202:23 2218:39 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:303 2218:319 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:408 2218:424 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2202:436 2218:452 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2202:507 2218:523 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:620 2218:636 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:787 2218:803 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:1061 2218:1077 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:1085 2218:1101 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2202:1597 2218:1613 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2202:1629 2218:1645 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2202:1680 2218:1696 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2202:1712 2218:1728 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:1769 2218:1785 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 2202:1869 2218:1885 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:1906 2218:1922 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2202:1929 2218:1945 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:2010 2218:2026 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:2074 2218:2090 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:2139 2218:2155 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:2218 2218:2234 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2202:2358 2218:2374 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2202:2398 2218:2414 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2202:2551 2218:2567 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:2608 2218:2624 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2202:2618 2218:2634 0.82 + 0 0.82 HSCKBG:MMCRKNB ssitesim alignAG 2202:2623 2218:2639 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2202:2658 2218:2674 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:2803 2218:2819 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2202:2810 2218:2826 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2202:2813 2218:2829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2202:2846 2218:2862 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2202:2863 2218:2879 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2202:2922 2218:2938 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2202:2931 2218:2947 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:3095 2218:3111 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2202:3147 2218:3163 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2202:3251 2218:3267 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2202:3295 2218:3311 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:3365 2218:3381 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:3435 2218:3451 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2202:3489 2218:3505 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:3494 2218:3510 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:3511 2218:3527 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2202:3525 2218:3541 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:3600 2218:3616 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2202:3636 2218:3652 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:3660 2218:3676 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:3813 2218:3829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:3879 2218:3895 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:3909 2218:3925 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:4082 2218:4098 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2202:4111 2218:4127 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:4223 2218:4239 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2202:4317 2218:4333 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2202:4386 2218:4402 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2242:79 2258:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2242:100 2258:116 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2242:408 2258:424 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2242:436 2258:452 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2242:620 2258:636 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2242:865 2258:881 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2242:925 2258:941 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2242:1061 2258:1077 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2242:1081 2258:1097 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2242:1330 2258:1346 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2242:1680 2258:1696 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2242:1869 2258:1885 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2242:1906 2258:1922 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2242:1929 2258:1945 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2242:2139 2258:2155 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 2242:2218 2258:2234 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2242:2398 2258:2414 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2242:2551 2258:2567 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2242:2608 2258:2624 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2242:2618 2258:2634 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2242:2623 2258:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2242:2658 2258:2674 0.91 + 0 0.91 HSCKBG:MMCRKNB ssitesim alignAG 2242:2810 2258:2826 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2242:2846 2258:2862 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2242:2922 2258:2938 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2242:2931 2258:2947 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2242:3095 2258:3111 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2242:3125 2258:3141 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2242:3147 2258:3163 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2242:3251 2258:3267 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2242:3435 2258:3451 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2242:3578 2258:3594 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2242:3587 2258:3603 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2242:3660 2258:3676 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2242:4082 2258:4098 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2242:4201 2258:4217 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2299:23 2315:39 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2299:100 2315:116 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2299:303 2315:319 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:327 2315:343 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2299:343 2315:359 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:439 2315:455 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:620 2315:636 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 2299:865 2315:881 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2299:1081 2315:1097 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:1597 2315:1613 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:1680 2315:1696 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:1712 2315:1728 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2299:1769 2315:1785 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:1929 2315:1945 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 2299:2010 2315:2026 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2299:2017 2315:2033 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:2074 2315:2090 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2299:2139 2315:2155 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2299:2306 2315:2322 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:2618 2315:2634 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2299:2658 2315:2674 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:2715 2315:2731 0.91 + 0 0.91 HSCKBG:MMCRKNB ssitesim alignAG 2299:2803 2315:2819 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2299:2810 2315:2826 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:2813 2315:2829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:2846 2315:2862 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:2863 2315:2879 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2299:2931 2315:2947 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:3078 2315:3094 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:3095 2315:3111 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:3125 2315:3141 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:3166 2315:3182 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2299:3251 2315:3267 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:3365 2315:3381 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2299:3435 2315:3451 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2299:3489 2315:3505 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:3511 2315:3527 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:3578 2315:3594 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2299:3636 2315:3652 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2299:3654 2315:3670 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:3660 2315:3676 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2299:3980 2315:3996 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2299:4082 2315:4098 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2299:4111 2315:4127 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:4142 2315:4158 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2299:4201 2315:4217 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:4223 2315:4239 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:4246 2315:4262 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2299:4317 2315:4333 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2299:4319 2315:4335 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:4383 2315:4399 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2299:4386 2315:4402 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2299:4499 2315:4515 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2554:100 2570:116 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2554:177 2570:193 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2554:327 2570:343 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2554:436 2570:452 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2554:439 2570:455 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2554:752 2570:768 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2554:828 2570:844 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2554:925 2570:941 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2554:1007 2570:1023 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2554:1061 2570:1077 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2554:1085 2570:1101 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2554:1337 2570:1353 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2554:1571 2570:1587 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2554:1597 2570:1613 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2554:1629 2570:1645 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2554:1680 2570:1696 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2554:1712 2570:1728 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2554:1769 2570:1785 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2554:1869 2570:1885 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2554:1912 2570:1928 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2554:2229 2570:2245 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2554:2306 2570:2322 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2554:2358 2570:2374 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2554:2398 2570:2414 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2554:2551 2570:2567 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2554:2608 2570:2624 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2554:2623 2570:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2554:2642 2570:2658 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2554:2658 2570:2674 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2554:2715 2570:2731 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2554:2803 2570:2819 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2554:2813 2570:2829 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2554:2846 2570:2862 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2554:2863 2570:2879 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2554:3078 2570:3094 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2554:3095 2570:3111 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2554:3147 2570:3163 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2554:3166 2570:3182 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2554:3334 2570:3350 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2554:3435 2570:3451 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2554:3489 2570:3505 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2554:3494 2570:3510 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2554:3578 2570:3594 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2554:3587 2570:3603 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2554:3600 2570:3616 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2554:3909 2570:3925 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2554:4082 2570:4098 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2554:4111 2570:4127 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2554:4142 2570:4158 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2554:4386 2570:4402 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2554:4458 2570:4474 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2554:4475 2570:4491 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2620:23 2636:39 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:79 2636:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:177 2636:193 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:620 2636:636 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2620:1061 2636:1077 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2620:1067 2636:1083 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2620:1081 2636:1097 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2620:1085 2636:1101 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2620:1330 2636:1346 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:1376 2636:1392 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2620:1712 2636:1728 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:1906 2636:1922 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:1912 2636:1928 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2620:1929 2636:1945 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2620:2010 2636:2026 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2620:2017 2636:2033 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:2074 2636:2090 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2620:2218 2636:2234 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2620:2229 2636:2245 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2620:2398 2636:2414 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2620:2608 2636:2624 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:2623 2636:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:2803 2636:2819 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 2620:2810 2636:2826 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 2620:2813 2636:2829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:2837 2636:2853 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:2863 2636:2879 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 2620:2922 2636:2938 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:3095 2636:3111 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2620:3125 2636:3141 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:3251 2636:3267 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:3295 2636:3311 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2620:3365 2636:3381 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2620:3489 2636:3505 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:3494 2636:3510 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:3511 2636:3527 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:3525 2636:3541 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:3578 2636:3594 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2620:3636 2636:3652 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 2620:3660 2636:3676 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2620:3813 2636:3829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:3909 2636:3925 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2620:3980 2636:3996 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:4082 2636:4098 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:4111 2636:4127 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 2620:4223 2636:4239 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:4317 2636:4333 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2620:4319 2636:4335 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2620:4323 2636:4339 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2620:4383 2636:4399 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2620:4386 2636:4402 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2620:4475 2636:4491 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:100 2740:116 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2724:177 2740:193 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:303 2740:319 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:343 2740:359 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2724:439 2740:455 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:507 2740:523 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2724:752 2740:768 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2724:828 2740:844 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2724:865 2740:881 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:1081 2740:1097 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2724:1135 2740:1151 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:1376 2740:1392 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:1597 2740:1613 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2724:1629 2740:1645 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:1769 2740:1785 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2724:1929 2740:1945 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:2074 2740:2090 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2724:2139 2740:2155 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:2218 2740:2234 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:2229 2740:2245 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:2306 2740:2322 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:2358 2740:2374 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2724:2551 2740:2567 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:2618 2740:2634 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:2623 2740:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:2642 2740:2658 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2724:2715 2740:2731 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:2813 2740:2829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:2863 2740:2879 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2724:3095 2740:3111 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2724:3125 2740:3141 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2724:3147 2740:3163 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2724:3166 2740:3182 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:3239 2740:3255 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:3251 2740:3267 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:3319 2740:3335 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:3334 2740:3350 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2724:3365 2740:3381 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2724:3489 2740:3505 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2724:3494 2740:3510 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:3511 2740:3527 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 2724:3578 2740:3594 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2724:3600 2740:3616 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2724:3980 2740:3996 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 2724:4111 2740:4127 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2724:4317 2740:4333 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2724:4386 2740:4402 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2724:4458 2740:4474 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2724:4475 2740:4491 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:79 2767:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2751:100 2767:116 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:327 2767:343 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:408 2767:424 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2751:436 2767:452 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2751:439 2767:455 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2751:752 2767:768 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:925 2767:941 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:1061 2767:1077 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2751:1376 2767:1392 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2751:1571 2767:1587 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2751:1597 2767:1613 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2751:1629 2767:1645 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2751:1712 2767:1728 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2751:1912 2767:1928 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:2074 2767:2090 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2751:2139 2767:2155 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2751:2218 2767:2234 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2751:2229 2767:2245 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2751:2306 2767:2322 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:2358 2767:2374 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2751:2398 2767:2414 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2751:2551 2767:2567 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2751:2618 2767:2634 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:2642 2767:2658 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:2658 2767:2674 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2751:2803 2767:2819 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:2810 2767:2826 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:2813 2767:2829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:2846 2767:2862 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2751:2863 2767:2879 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:2922 2767:2938 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:2931 2767:2947 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2751:3078 2767:3094 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2751:3095 2767:3111 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:3125 2767:3141 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:3147 2767:3163 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2751:3295 2767:3311 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2751:3334 2767:3350 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:3365 2767:3381 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:3489 2767:3505 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2751:3494 2767:3510 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:3511 2767:3527 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2751:3525 2767:3541 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2751:3578 2767:3594 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:3587 2767:3603 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:3636 2767:3652 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2751:3654 2767:3670 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:3813 2767:3829 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2751:3909 2767:3925 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2751:4082 2767:4098 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:4111 2767:4127 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:4317 2767:4333 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2751:4383 2767:4399 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2751:4475 2767:4491 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2751:4499 2767:4515 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2757:100 2773:116 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2757:177 2773:193 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2757:303 2773:319 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2757:343 2773:359 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2757:436 2773:452 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2757:439 2773:455 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2757:507 2773:523 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2757:620 2773:636 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2757:828 2773:844 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2757:1061 2773:1077 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2757:1067 2773:1083 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2757:1081 2773:1097 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2757:1085 2773:1101 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2757:1337 2773:1353 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2757:1376 2773:1392 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2757:1571 2773:1587 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2757:1597 2773:1613 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2757:1912 2773:1928 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2757:2010 2773:2026 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2757:2074 2773:2090 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2757:2229 2773:2245 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2757:2398 2773:2414 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2757:2551 2773:2567 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2757:2608 2773:2624 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2757:2623 2773:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2757:2642 2773:2658 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2757:2715 2773:2731 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2757:2803 2773:2819 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2757:2863 2773:2879 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2757:3078 2773:3094 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2757:3095 2773:3111 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2757:3147 2773:3163 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2757:3251 2773:3267 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2757:3295 2773:3311 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2757:3334 2773:3350 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2757:3365 2773:3381 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2757:3435 2773:3451 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2757:3494 2773:3510 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 2757:3511 2773:3527 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2757:3636 2773:3652 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 2757:3660 2773:3676 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2757:3813 2773:3829 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2757:3909 2773:3925 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2757:3980 2773:3996 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2757:4082 2773:4098 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2757:4111 2773:4127 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2757:4142 2773:4158 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2757:4223 2773:4239 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2757:4246 2773:4262 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2757:4317 2773:4333 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2757:4323 2773:4339 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2757:4386 2773:4402 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2757:4475 2773:4491 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2832:23 2848:39 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2832:79 2848:95 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 2832:303 2848:319 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2832:327 2848:343 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2832:408 2848:424 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2832:436 2848:452 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2832:439 2848:455 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2832:620 2848:636 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2832:1007 2848:1023 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2832:1061 2848:1077 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2832:1081 2848:1097 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2832:1337 2848:1353 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2832:1597 2848:1613 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2832:1629 2848:1645 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2832:1680 2848:1696 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2832:1712 2848:1728 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2832:1725 2848:1741 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2832:1869 2848:1885 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2832:1912 2848:1928 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2832:1929 2848:1945 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2832:2010 2848:2026 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2832:2017 2848:2033 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2832:2074 2848:2090 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2832:2229 2848:2245 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2832:2306 2848:2322 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2832:2358 2848:2374 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2832:2398 2848:2414 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2832:2551 2848:2567 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2832:2608 2848:2624 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2832:2618 2848:2634 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2832:2658 2848:2674 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2832:2715 2848:2731 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2832:2803 2848:2819 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2832:2810 2848:2826 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 2832:2863 2848:2879 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2832:2922 2848:2938 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2832:2931 2848:2947 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2832:3095 2848:3111 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2832:3147 2848:3163 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2832:3166 2848:3182 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2832:3239 2848:3255 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2832:3251 2848:3267 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2832:3489 2848:3505 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2832:3511 2848:3527 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2832:3578 2848:3594 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2832:3587 2848:3603 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2832:3636 2848:3652 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2832:3660 2848:3676 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2832:3813 2848:3829 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2832:3879 2848:3895 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2832:3909 2848:3925 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2832:4082 2848:4098 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2832:4111 2848:4127 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2832:4317 2848:4333 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2832:4323 2848:4339 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2832:4386 2848:4402 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2832:4475 2848:4491 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2866:100 2882:116 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2866:177 2882:193 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2866:303 2882:319 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:620 2882:636 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:752 2882:768 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2866:828 2882:844 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2866:865 2882:881 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:1067 2882:1083 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:1081 2882:1097 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2866:1337 2882:1353 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:1680 2882:1696 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:1869 2882:1885 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:1912 2882:1928 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:1929 2882:1945 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:2139 2882:2155 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:2306 2882:2322 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:2358 2882:2374 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:2642 2882:2658 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2866:2658 2882:2674 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:2715 2882:2731 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2866:2863 2882:2879 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2866:3078 2882:3094 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:3125 2882:3141 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:3147 2882:3163 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:3239 2882:3255 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2866:3295 2882:3311 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2866:3319 2882:3335 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2866:3334 2882:3350 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2866:3365 2882:3381 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2866:3435 2882:3451 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:3489 2882:3505 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:3494 2882:3510 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2866:3578 2882:3594 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:3600 2882:3616 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:3660 2882:3676 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:3980 2882:3996 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2866:4142 2882:4158 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:4201 2882:4217 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:4319 2882:4335 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:4323 2882:4339 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2866:4458 2882:4474 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2866:4475 2882:4491 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2941:23 2957:39 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2941:100 2957:116 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2941:177 2957:193 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2941:327 2957:343 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2941:436 2957:452 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2941:439 2957:455 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2941:752 2957:768 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2941:828 2957:844 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2941:925 2957:941 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2941:1007 2957:1023 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2941:1061 2957:1077 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2941:1085 2957:1101 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2941:1337 2957:1353 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2941:1376 2957:1392 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2941:1571 2957:1587 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2941:1597 2957:1613 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2941:1629 2957:1645 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2941:1680 2957:1696 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2941:1769 2957:1785 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2941:1912 2957:1928 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2941:2139 2957:2155 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2941:2229 2957:2245 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2941:2306 2957:2322 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2941:2398 2957:2414 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2941:2608 2957:2624 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2941:2618 2957:2634 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2941:2623 2957:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2941:2642 2957:2658 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2941:2658 2957:2674 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2941:2813 2957:2829 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2941:2846 2957:2862 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2941:2931 2957:2947 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2941:3078 2957:3094 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2941:3147 2957:3163 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2941:3166 2957:3182 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2941:3239 2957:3255 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2941:3319 2957:3335 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2941:3334 2957:3350 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2941:3489 2957:3505 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2941:3494 2957:3510 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2941:3578 2957:3594 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2941:3587 2957:3603 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2941:3909 2957:3925 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2941:3980 2957:3996 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2941:4082 2957:4098 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2941:4111 2957:4127 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 2941:4142 2957:4158 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 2941:4223 2957:4239 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 2941:4458 2957:4474 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 2941:4475 2957:4491 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3034:177 3050:193 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3034:327 3050:343 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3034:439 3050:455 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3034:620 3050:636 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3034:752 3050:768 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3034:828 3050:844 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3034:1007 3050:1023 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3034:1067 3050:1083 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3034:1081 3050:1097 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3034:1085 3050:1101 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3034:1330 3050:1346 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3034:1337 3050:1353 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3034:1376 3050:1392 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3034:1597 3050:1613 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3034:1629 3050:1645 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3034:1680 3050:1696 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3034:1712 3050:1728 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3034:1906 3050:1922 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3034:1912 3050:1928 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3034:1929 3050:1945 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3034:2010 3050:2026 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3034:2074 3050:2090 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3034:2218 3050:2234 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3034:2229 3050:2245 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 3034:2358 3050:2374 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3034:2398 3050:2414 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3034:2551 3050:2567 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3034:2608 3050:2624 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3034:2642 3050:2658 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3034:2803 3050:2819 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3034:2810 3050:2826 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3034:2813 3050:2829 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3034:2863 3050:2879 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3034:2922 3050:2938 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3034:3078 3050:3094 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3034:3095 3050:3111 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3034:3125 3050:3141 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3034:3295 3050:3311 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3034:3334 3050:3350 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3034:3365 3050:3381 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3034:3435 3050:3451 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3034:3489 3050:3505 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3034:3494 3050:3510 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3034:3511 3050:3527 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3034:3578 3050:3594 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3034:3587 3050:3603 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3034:3600 3050:3616 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3034:3636 3050:3652 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3034:3654 3050:3670 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3034:3909 3050:3925 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3034:3980 3050:3996 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3034:4111 3050:4127 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3034:4142 3050:4158 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3034:4201 3050:4217 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3034:4317 3050:4333 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3034:4319 3050:4335 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3034:4386 3050:4402 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3034:4475 3050:4491 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3034:4499 3050:4515 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:100 3120:116 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3104:177 3120:193 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3104:303 3120:319 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3104:327 3120:343 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3104:343 3120:359 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3104:408 3120:424 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3104:507 3120:523 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3104:620 3120:636 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3104:828 3120:844 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3104:1007 3120:1023 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3104:1067 3120:1083 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:1081 3120:1097 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3104:1085 3120:1101 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3104:1330 3120:1346 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3104:1571 3120:1587 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3104:1680 3120:1696 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3104:1712 3120:1728 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:1725 3120:1741 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:1769 3120:1785 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:1869 3120:1885 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 3104:1906 3120:1922 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3104:1929 3120:1945 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:2017 3120:2033 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:2074 3120:2090 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:2218 3120:2234 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3104:2229 3120:2245 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:2398 3120:2414 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3104:2551 3120:2567 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3104:2608 3120:2624 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3104:2618 3120:2634 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3104:2623 3120:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:2658 3120:2674 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3104:2715 3120:2731 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3104:2803 3120:2819 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:2813 3120:2829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:2846 3120:2862 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:2863 3120:2879 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3104:2922 3120:2938 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:3078 3120:3094 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3104:3095 3120:3111 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 3104:3125 3120:3141 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3104:3147 3120:3163 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3104:3166 3120:3182 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:3251 3120:3267 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:3295 3120:3311 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3104:3334 3120:3350 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3104:3435 3120:3451 0.91 + 0 0.91 HSCKBG:MMCRKNB ssitesim alignAG 3104:3489 3120:3505 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:3494 3120:3510 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:3578 3120:3594 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:3636 3120:3652 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3104:3660 3120:3676 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:3813 3120:3829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:3909 3120:3925 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:3980 3120:3996 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:4082 3120:4098 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3104:4142 3120:4158 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3104:4201 3120:4217 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3104:4317 3120:4333 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:4323 3120:4339 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3104:4386 3120:4402 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3104:4475 3120:4491 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3158:100 3174:116 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3158:177 3174:193 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3158:327 3174:343 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3158:436 3174:452 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3158:439 3174:455 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3158:507 3174:523 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3158:620 3174:636 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3158:752 3174:768 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3158:787 3174:803 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3158:865 3174:881 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3158:1007 3174:1023 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3158:1067 3174:1083 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3158:1081 3174:1097 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3158:1085 3174:1101 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3158:1330 3174:1346 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3158:1337 3174:1353 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3158:1376 3174:1392 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3158:1597 3174:1613 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3158:1629 3174:1645 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3158:1712 3174:1728 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3158:1725 3174:1741 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3158:1869 3174:1885 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3158:1929 3174:1945 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3158:2010 3174:2026 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3158:2074 3174:2090 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3158:2139 3174:2155 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3158:2218 3174:2234 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3158:2229 3174:2245 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3158:2306 3174:2322 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3158:2358 3174:2374 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3158:2551 3174:2567 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3158:2608 3174:2624 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3158:2618 3174:2634 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3158:2623 3174:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3158:2715 3174:2731 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3158:2803 3174:2819 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3158:2810 3174:2826 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3158:2813 3174:2829 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3158:2863 3174:2879 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3158:2922 3174:2938 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3158:3078 3174:3094 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3158:3125 3174:3141 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3158:3166 3174:3182 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3158:3334 3174:3350 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3158:3365 3174:3381 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3158:3435 3174:3451 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3158:3489 3174:3505 0.91 + 0 0.91 HSCKBG:MMCRKNB ssitesim alignAG 3158:3511 3174:3527 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3158:3578 3174:3594 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3158:3587 3174:3603 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3158:3600 3174:3616 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3158:3636 3174:3652 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3158:3654 3174:3670 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3158:3879 3174:3895 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3158:3909 3174:3925 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3158:3980 3174:3996 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3158:4082 3174:4098 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3158:4111 3174:4127 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3158:4317 3174:4333 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3158:4383 3174:4399 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3165:23 3181:39 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:79 3181:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:100 3181:116 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3165:177 3181:193 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:408 3181:424 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3165:439 3181:455 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3165:507 3181:523 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3165:620 3181:636 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3165:752 3181:768 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3165:1061 3181:1077 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:1067 3181:1083 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:1081 3181:1097 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3165:1085 3181:1101 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:1337 3181:1353 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3165:1376 3181:1392 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3165:1571 3181:1587 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:1597 3181:1613 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:1629 3181:1645 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3165:1912 3181:1928 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3165:1929 3181:1945 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:2010 3181:2026 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:2017 3181:2033 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:2074 3181:2090 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3165:2139 3181:2155 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:2218 3181:2234 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:2229 3181:2245 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3165:2306 3181:2322 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3165:2398 3181:2414 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:2642 3181:2658 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3165:2803 3181:2819 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3165:2810 3181:2826 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3165:2837 3181:2853 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:2863 3181:2879 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3165:2922 3181:2938 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3165:3078 3181:3094 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3165:3147 3181:3163 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:3239 3181:3255 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3165:3251 3181:3267 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3165:3334 3181:3350 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3165:3365 3181:3381 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3165:3489 3181:3505 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:3494 3181:3510 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3165:3511 3181:3527 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3165:3578 3181:3594 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3165:3587 3181:3603 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3165:3600 3181:3616 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:3654 3181:3670 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:3660 3181:3676 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:4111 3181:4127 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3165:4142 3181:4158 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:4201 3181:4217 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3165:4223 3181:4239 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:4323 3181:4339 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3165:4386 3181:4402 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3165:4475 3181:4491 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3189:23 3205:39 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3189:79 3205:95 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3189:177 3205:193 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3189:327 3205:343 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3189:439 3205:455 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3189:507 3205:523 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3189:620 3205:636 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3189:865 3205:881 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3189:1007 3205:1023 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3189:1061 3205:1077 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3189:1081 3205:1097 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3189:1337 3205:1353 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3189:1376 3205:1392 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3189:1597 3205:1613 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3189:1680 3205:1696 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3189:1725 3205:1741 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3189:1929 3205:1945 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3189:2010 3205:2026 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3189:2017 3205:2033 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3189:2074 3205:2090 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3189:2218 3205:2234 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3189:2229 3205:2245 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3189:2306 3205:2322 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3189:2358 3205:2374 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3189:2398 3205:2414 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3189:2608 3205:2624 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3189:2618 3205:2634 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3189:2642 3205:2658 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3189:2803 3205:2819 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3189:2810 3205:2826 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 3189:2863 3205:2879 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3189:2922 3205:2938 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3189:2931 3205:2947 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3189:3078 3205:3094 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3189:3147 3205:3163 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3189:3166 3205:3182 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3189:3251 3205:3267 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3189:3319 3205:3335 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3189:3365 3205:3381 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3189:3489 3205:3505 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3189:3494 3205:3510 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3189:3511 3205:3527 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3189:3525 3205:3541 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3189:3578 3205:3594 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3189:3587 3205:3603 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3189:3600 3205:3616 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3189:3636 3205:3652 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3189:3813 3205:3829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3189:3879 3205:3895 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3189:3909 3205:3925 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3189:3980 3205:3996 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3189:4111 3205:4127 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3200:177 3216:193 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3200:327 3216:343 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3200:408 3216:424 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3200:436 3216:452 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3200:439 3216:455 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3200:620 3216:636 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3200:752 3216:768 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3200:828 3216:844 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3200:925 3216:941 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3200:1007 3216:1023 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3200:1061 3216:1077 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3200:1085 3216:1101 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3200:1330 3216:1346 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3200:1337 3216:1353 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3200:1376 3216:1392 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3200:1571 3216:1587 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3200:1597 3216:1613 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3200:1629 3216:1645 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3200:1680 3216:1696 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3200:1712 3216:1728 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3200:1769 3216:1785 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3200:1906 3216:1922 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3200:1912 3216:1928 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3200:1929 3216:1945 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3200:2010 3216:2026 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3200:2074 3216:2090 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3200:2229 3216:2245 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 3200:2306 3216:2322 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3200:2358 3216:2374 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3200:2398 3216:2414 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3200:2551 3216:2567 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3200:2608 3216:2624 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3200:2618 3216:2634 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3200:2642 3216:2658 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3200:2803 3216:2819 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3200:2810 3216:2826 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3200:2813 3216:2829 0.64 + 0 0.64 HSCKBG:MMCRKNB ssitesim alignAG 3200:2863 3216:2879 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3200:3078 3216:3094 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3200:3095 3216:3111 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3200:3147 3216:3163 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3200:3166 3216:3182 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3200:3334 3216:3350 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3200:3489 3216:3505 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3200:3494 3216:3510 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3200:3511 3216:3527 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3200:3525 3216:3541 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3200:3587 3216:3603 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3200:3600 3216:3616 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3200:3636 3216:3652 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3200:3813 3216:3829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3200:3909 3216:3925 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3200:3980 3216:3996 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3200:4082 3216:4098 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3200:4111 3216:4127 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 3200:4142 3216:4158 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3200:4201 3216:4217 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3200:4223 3216:4239 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3200:4386 3216:4402 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3200:4458 3216:4474 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3200:4475 3216:4491 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3200:4499 3216:4515 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3217:100 3233:116 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3217:436 3233:452 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3217:439 3233:455 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3217:620 3233:636 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3217:752 3233:768 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3217:787 3233:803 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3217:865 3233:881 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3217:1061 3233:1077 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3217:1067 3233:1083 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3217:1081 3233:1097 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3217:1376 3233:1392 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3217:1571 3233:1587 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3217:1597 3233:1613 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3217:1929 3233:1945 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3217:2074 3233:2090 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3217:2306 3233:2322 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3217:2551 3233:2567 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3217:2608 3233:2624 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3217:2623 3233:2639 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3217:2658 3233:2674 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3217:2931 3233:2947 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3217:3125 3233:3141 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3217:3147 3233:3163 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3217:3166 3233:3182 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3217:3239 3233:3255 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3217:3489 3233:3505 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3217:3511 3233:3527 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3217:3660 3233:3676 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3217:3813 3233:3829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3217:3879 3233:3895 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3217:3980 3233:3996 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3217:4082 3233:4098 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3217:4246 3233:4262 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3217:4317 3233:4333 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3217:4383 3233:4399 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3217:4458 3233:4474 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3217:4499 3233:4515 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3268:79 3284:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3268:100 3284:116 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3268:177 3284:193 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3268:327 3284:343 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3268:343 3284:359 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3268:436 3284:452 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3268:439 3284:455 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3268:752 3284:768 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3268:828 3284:844 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3268:925 3284:941 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3268:1081 3284:1097 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3268:1376 3284:1392 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3268:1571 3284:1587 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3268:1597 3284:1613 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3268:1629 3284:1645 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3268:1869 3284:1885 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3268:1906 3284:1922 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3268:1912 3284:1928 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3268:2010 3284:2026 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3268:2017 3284:2033 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3268:2074 3284:2090 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3268:2139 3284:2155 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3268:2229 3284:2245 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3268:2358 3284:2374 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3268:2398 3284:2414 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3268:2551 3284:2567 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3268:2642 3284:2658 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3268:2658 3284:2674 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3268:2803 3284:2819 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3268:2813 3284:2829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3268:2846 3284:2862 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3268:2863 3284:2879 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3268:2922 3284:2938 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3268:2931 3284:2947 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3268:3078 3284:3094 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3268:3095 3284:3111 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3268:3125 3284:3141 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3268:3147 3284:3163 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3268:3166 3284:3182 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3268:3295 3284:3311 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3268:3334 3284:3350 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3268:3365 3284:3381 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3268:3494 3284:3510 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3268:3578 3284:3594 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3268:3587 3284:3603 0.64 + 0 0.64 HSCKBG:MMCRKNB ssitesim alignAG 3268:3636 3284:3652 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3268:3813 3284:3829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3268:4111 3284:4127 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3268:4201 3284:4217 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3268:4223 3284:4239 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3268:4319 3284:4335 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3268:4383 3284:4399 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3268:4458 3284:4474 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3268:4475 3284:4491 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3277:79 3293:95 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3277:100 3293:116 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3277:303 3293:319 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3277:343 3293:359 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3277:408 3293:424 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3277:436 3293:452 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3277:439 3293:455 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3277:507 3293:523 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3277:752 3293:768 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3277:925 3293:941 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3277:1007 3293:1023 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3277:1061 3293:1077 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3277:1081 3293:1097 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3277:1135 3293:1151 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3277:1337 3293:1353 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3277:1597 3293:1613 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3277:1629 3293:1645 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3277:1680 3293:1696 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3277:1869 3293:1885 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3277:1912 3293:1928 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3277:2017 3293:2033 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3277:2074 3293:2090 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3277:2139 3293:2155 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3277:2229 3293:2245 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3277:2306 3293:2322 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3277:2358 3293:2374 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3277:2642 3293:2658 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3277:2658 3293:2674 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3277:2846 3293:2862 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3277:2931 3293:2947 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3277:3147 3293:3163 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3277:3166 3293:3182 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3277:3239 3293:3255 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3277:3251 3293:3267 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3277:3319 3293:3335 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3277:3494 3293:3510 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3277:3511 3293:3527 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3277:3587 3293:3603 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3277:3636 3293:3652 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3277:3660 3293:3676 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3277:3813 3293:3829 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3277:3879 3293:3895 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3277:3980 3293:3996 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3277:4082 3293:4098 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3277:4111 3293:4127 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3277:4246 3293:4262 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3277:4323 3293:4339 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3277:4458 3293:4474 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3277:4475 3293:4491 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3281:100 3297:116 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3281:177 3297:193 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3281:327 3297:343 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3281:343 3297:359 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3281:439 3297:455 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3281:507 3297:523 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3281:752 3297:768 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3281:787 3297:803 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3281:828 3297:844 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3281:865 3297:881 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3281:1085 3297:1101 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3281:1135 3297:1151 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3281:1376 3297:1392 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3281:1597 3297:1613 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3281:1629 3297:1645 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3281:1680 3297:1696 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3281:1712 3297:1728 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3281:1725 3297:1741 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3281:1769 3297:1785 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3281:2074 3297:2090 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3281:2229 3297:2245 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3281:2358 3297:2374 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3281:2642 3297:2658 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3281:2813 3297:2829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3281:2846 3297:2862 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3281:3078 3297:3094 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3281:3125 3297:3141 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3281:3166 3297:3182 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3281:3239 3297:3255 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3281:3319 3297:3335 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3281:3334 3297:3350 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3281:3435 3297:3451 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3281:3489 3297:3505 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3281:3511 3297:3527 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3281:3600 3297:3616 0.64 + 0 0.64 HSCKBG:MMCRKNB ssitesim alignAG 3281:3879 3297:3895 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3281:3980 3297:3996 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3281:4319 3297:4335 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3281:4383 3297:4399 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3281:4475 3297:4491 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3315:79 3331:95 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3315:303 3331:319 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3315:327 3331:343 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3315:343 3331:359 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3315:408 3331:424 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3315:436 3331:452 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3315:439 3331:455 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3315:507 3331:523 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3315:620 3331:636 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3315:925 3331:941 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3315:1061 3331:1077 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3315:1081 3331:1097 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3315:1085 3331:1101 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3315:1376 3331:1392 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3315:1571 3331:1587 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3315:1597 3331:1613 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3315:1629 3331:1645 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3315:1680 3331:1696 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3315:1712 3331:1728 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3315:1725 3331:1741 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3315:1769 3331:1785 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3315:1912 3331:1928 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3315:1929 3331:1945 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3315:2010 3331:2026 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3315:2017 3331:2033 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3315:2074 3331:2090 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3315:2229 3331:2245 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3315:2398 3331:2414 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3315:2551 3331:2567 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3315:2608 3331:2624 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3315:2618 3331:2634 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3315:2803 3331:2819 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3315:2810 3331:2826 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3315:2846 3331:2862 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3315:2863 3331:2879 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3315:2922 3331:2938 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3315:2931 3331:2947 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3315:3095 3331:3111 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 3315:3147 3331:3163 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3315:3251 3331:3267 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3315:3295 3331:3311 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3315:3365 3331:3381 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3315:3435 3331:3451 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3315:3494 3331:3510 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3315:3511 3331:3527 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3315:3525 3331:3541 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3315:3587 3331:3603 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3315:3636 3331:3652 0.64 + 0 0.64 HSCKBG:MMCRKNB ssitesim alignAG 3315:3660 3331:3676 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3315:3813 3331:3829 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3315:3909 3331:3925 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3315:4082 3331:4098 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3315:4111 3331:4127 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3315:4142 3331:4158 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3315:4201 3331:4217 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3315:4223 3331:4239 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3315:4317 3331:4333 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3315:4319 3331:4335 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3315:4323 3331:4339 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3315:4386 3331:4402 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3315:4475 3331:4491 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3333:343 3349:359 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3333:408 3349:424 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3333:507 3349:523 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3333:1085 3349:1101 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3333:1330 3349:1346 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3333:1376 3349:1392 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3333:1629 3349:1645 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3333:1712 3349:1728 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3333:1906 3349:1922 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3333:1929 3349:1945 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3333:2017 3349:2033 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3333:2074 3349:2090 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3333:2139 3349:2155 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3333:2551 3349:2567 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3333:2642 3349:2658 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3333:2813 3349:2829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3333:2837 3349:2853 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3333:3125 3349:3141 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3333:3295 3349:3311 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3333:3334 3349:3350 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3333:3365 3349:3381 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3333:3578 3349:3594 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3333:3600 3349:3616 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3333:3654 3349:3670 0.91 + 0 0.91 HSCKBG:MMCRKNB ssitesim alignAG 3333:4319 3349:4335 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3333:4383 3349:4399 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3339:23 3355:39 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3339:303 3355:319 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3339:507 3355:523 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3339:620 3355:636 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3339:752 3355:768 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3339:1007 3355:1023 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3339:1067 3355:1083 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3339:1081 3355:1097 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3339:1135 3355:1151 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3339:1337 3355:1353 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3339:1912 3355:1928 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3339:1929 3355:1945 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3339:2010 3355:2026 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3339:2139 3355:2155 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3339:2229 3355:2245 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3339:2306 3355:2322 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3339:2358 3355:2374 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3339:2608 3355:2624 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3339:2623 3355:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3339:2658 3355:2674 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3339:2715 3355:2731 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3339:2810 3355:2826 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3339:2837 3355:2853 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3339:2931 3355:2947 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3339:3147 3355:3163 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3339:3251 3355:3267 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3339:3319 3355:3335 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3339:3365 3355:3381 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3339:3489 3355:3505 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3339:3511 3355:3527 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3339:3578 3355:3594 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3339:3636 3355:3652 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3339:3660 3355:3676 0.82 + 0 0.82 HSCKBG:MMCRKNB ssitesim alignAG 3339:3909 3355:3925 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3339:3980 3355:3996 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3339:4082 3355:4098 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3339:4111 3355:4127 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3339:4246 3355:4262 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3339:4317 3355:4333 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3339:4323 3355:4339 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3339:4386 3355:4402 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3339:4458 3355:4474 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3492:23 3508:39 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3492:79 3508:95 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3492:303 3508:319 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3492:343 3508:359 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3492:408 3508:424 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3492:436 3508:452 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3492:439 3508:455 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3492:507 3508:523 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3492:620 3508:636 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3492:925 3508:941 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3492:1061 3508:1077 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3492:1330 3508:1346 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3492:1337 3508:1353 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3492:1571 3508:1587 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3492:1680 3508:1696 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3492:1712 3508:1728 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3492:1869 3508:1885 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3492:1912 3508:1928 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3492:2010 3508:2026 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3492:2017 3508:2033 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3492:2074 3508:2090 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3492:2218 3508:2234 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3492:2358 3508:2374 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3492:2398 3508:2414 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3492:2551 3508:2567 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3492:2623 3508:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3492:2642 3508:2658 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3492:2803 3508:2819 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3492:2810 3508:2826 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3492:2922 3508:2938 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3492:2931 3508:2947 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3492:3095 3508:3111 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3492:3147 3508:3163 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3492:3251 3508:3267 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3492:3319 3508:3335 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3492:3494 3508:3510 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3492:3525 3508:3541 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3492:3636 3508:3652 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3492:3813 3508:3829 0.91 + 0 0.91 HSCKBG:MMCRKNB ssitesim alignAG 3492:3879 3508:3895 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3492:3909 3508:3925 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3492:4082 3508:4098 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3492:4111 3508:4127 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3492:4317 3508:4333 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3492:4386 3508:4402 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3492:4475 3508:4491 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3548:79 3564:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3548:177 3564:193 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3548:303 3564:319 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3548:327 3564:343 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3548:439 3564:455 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3548:507 3564:523 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3548:828 3564:844 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3548:1007 3564:1023 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3548:1081 3564:1097 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3548:1085 3564:1101 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3548:1376 3564:1392 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3548:1597 3564:1613 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3548:1680 3564:1696 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3548:1769 3564:1785 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3548:2074 3564:2090 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3548:2218 3564:2234 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3548:2229 3564:2245 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3548:2398 3564:2414 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3548:2551 3564:2567 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3548:2608 3564:2624 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3548:2618 3564:2634 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3548:2642 3564:2658 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3548:2715 3564:2731 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3548:2810 3564:2826 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3548:2846 3564:2862 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3548:2863 3564:2879 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3548:3078 3564:3094 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3548:3125 3564:3141 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3548:3166 3564:3182 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3548:3239 3564:3255 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3548:3334 3564:3350 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3548:3435 3564:3451 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3548:3489 3564:3505 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3548:3494 3564:3510 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3548:3511 3564:3527 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3548:3600 3564:3616 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3548:3879 3564:3895 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3548:3909 3564:3925 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3548:3980 3564:3996 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3548:4142 3564:4158 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3548:4201 3564:4217 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3548:4223 3564:4239 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3548:4323 3564:4339 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3548:4499 3564:4515 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:23 3600:39 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3584:79 3600:95 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:100 3600:116 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3584:177 3600:193 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3584:303 3600:319 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:327 3600:343 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:343 3600:359 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3584:408 3600:424 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:436 3600:452 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3584:439 3600:455 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3584:507 3600:523 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:620 3600:636 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3584:865 3600:881 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:925 3600:941 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3584:1007 3600:1023 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3584:1061 3600:1077 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3584:1081 3600:1097 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3584:1135 3600:1151 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:1337 3600:1353 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3584:1376 3600:1392 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:1571 3600:1587 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3584:1597 3600:1613 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3584:1680 3600:1696 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3584:1725 3600:1741 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3584:1912 3600:1928 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3584:1929 3600:1945 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3584:2017 3600:2033 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3584:2074 3600:2090 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3584:2218 3600:2234 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:2306 3600:2322 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3584:2358 3600:2374 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3584:2608 3600:2624 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:2618 3600:2634 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:2715 3600:2731 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:2803 3600:2819 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3584:2810 3600:2826 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3584:2837 3600:2853 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:2846 3600:2862 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3584:2863 3600:2879 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3584:2922 3600:2938 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:2931 3600:2947 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:3078 3600:3094 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3584:3095 3600:3111 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:3147 3600:3163 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3584:3166 3600:3182 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3584:3251 3600:3267 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:3319 3600:3335 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3584:3365 3600:3381 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3584:3435 3600:3451 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3584:3494 3600:3510 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3584:3511 3600:3527 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3584:3525 3600:3541 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3584:3578 3600:3594 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3584:3587 3600:3603 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3584:3600 3600:3616 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:3636 3600:3652 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:3813 3600:3829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:3879 3600:3895 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3584:3909 3600:3925 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3584:3980 3600:3996 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:4082 3600:4098 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3584:4111 3600:4127 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3584:4142 3600:4158 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:4201 3600:4217 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:4223 3600:4239 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3584:4246 3600:4262 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3584:4317 3600:4333 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:4475 3600:4491 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3584:4499 3600:4515 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3653:79 3669:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3653:408 3669:424 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3653:436 3669:452 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3653:752 3669:768 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3653:787 3669:803 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3653:865 3669:881 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3653:925 3669:941 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3653:1007 3669:1023 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3653:1061 3669:1077 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3653:1067 3669:1083 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3653:1135 3669:1151 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3653:1330 3669:1346 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3653:1337 3669:1353 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3653:1571 3669:1587 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3653:1629 3669:1645 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3653:1680 3669:1696 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3653:1725 3669:1741 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3653:1769 3669:1785 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3653:1869 3669:1885 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3653:1912 3669:1928 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3653:1929 3669:1945 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3653:2017 3669:2033 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3653:2218 3669:2234 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3653:2306 3669:2322 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3653:2398 3669:2414 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3653:2608 3669:2624 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3653:2618 3669:2634 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3653:2623 3669:2639 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3653:2658 3669:2674 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3653:2803 3669:2819 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3653:2810 3669:2826 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3653:2813 3669:2829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3653:2837 3669:2853 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3653:2846 3669:2862 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3653:2922 3669:2938 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3653:3078 3669:3094 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3653:3147 3669:3163 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3653:3166 3669:3182 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3653:3239 3669:3255 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3653:3334 3669:3350 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3653:3435 3669:3451 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3653:3489 3669:3505 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3653:3511 3669:3527 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3653:3578 3669:3594 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3653:3587 3669:3603 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3653:3660 3669:3676 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3653:3879 3669:3895 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3653:4082 3669:4098 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3653:4111 3669:4127 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3653:4223 3669:4239 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3653:4458 3669:4474 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3653:4499 3669:4515 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:177 3671:193 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:303 3671:319 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3655:327 3671:343 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3655:343 3671:359 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:507 3671:523 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3655:620 3671:636 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:752 3671:768 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:865 3671:881 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3655:1081 3671:1097 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3655:1135 3671:1151 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3655:1597 3671:1613 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3655:1629 3671:1645 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:1929 3671:1945 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3655:2010 3671:2026 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:2074 3671:2090 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3655:2139 3671:2155 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:2218 3671:2234 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:2229 3671:2245 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3655:2306 3671:2322 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:2358 3671:2374 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3655:2608 3671:2624 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:2618 3671:2634 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:2642 3671:2658 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:2715 3671:2731 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3655:2803 3671:2819 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:2813 3671:2829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:2863 3671:2879 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3655:3125 3671:3141 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3655:3166 3671:3182 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3655:3319 3671:3335 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3655:3334 3671:3350 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:3365 3671:3381 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3655:3489 3671:3505 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3655:3511 3671:3527 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 3655:3578 3671:3594 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3655:3600 3671:3616 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:3636 3671:3652 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:3660 3671:3676 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:3879 3671:3895 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:3909 3671:3925 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3655:3980 3671:3996 0.91 + 0 0.91 HSCKBG:MMCRKNB ssitesim alignAG 3655:4111 3671:4127 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3655:4201 3671:4217 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:4317 3671:4333 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3655:4319 3671:4335 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:4323 3671:4339 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3655:4458 3671:4474 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:4475 3671:4491 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3655:4499 3671:4515 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3757:23 3773:39 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3757:79 3773:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3757:100 3773:116 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3757:303 3773:319 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3757:408 3773:424 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3757:436 3773:452 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3757:620 3773:636 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3757:925 3773:941 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3757:1007 3773:1023 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3757:1061 3773:1077 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 3757:1330 3773:1346 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3757:1337 3773:1353 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3757:1571 3773:1587 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3757:1597 3773:1613 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3757:1629 3773:1645 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3757:1680 3773:1696 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3757:1725 3773:1741 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3757:1769 3773:1785 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3757:1912 3773:1928 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3757:1929 3773:1945 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3757:2010 3773:2026 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3757:2218 3773:2234 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3757:2306 3773:2322 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3757:2358 3773:2374 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3757:2608 3773:2624 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3757:2618 3773:2634 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3757:2623 3773:2639 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3757:2715 3773:2731 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3757:2803 3773:2819 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3757:2810 3773:2826 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3757:2813 3773:2829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3757:2837 3773:2853 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3757:2846 3773:2862 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3757:2863 3773:2879 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3757:2931 3773:2947 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3757:3078 3773:3094 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3757:3095 3773:3111 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3757:3147 3773:3163 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3757:3166 3773:3182 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3757:3251 3773:3267 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3757:3435 3773:3451 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3757:3489 3773:3505 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3757:3511 3773:3527 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3757:3525 3773:3541 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3757:3587 3773:3603 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3757:3636 3773:3652 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3757:3660 3773:3676 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3757:3813 3773:3829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3757:3909 3773:3925 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3757:4082 3773:4098 0.91 + 0 0.91 HSCKBG:MMCRKNB ssitesim alignAG 3757:4142 3773:4158 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3757:4223 3773:4239 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3757:4246 3773:4262 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3757:4317 3773:4333 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3757:4386 3773:4402 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3757:4499 3773:4515 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3819:100 3835:116 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3819:303 3835:319 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3819:408 3835:424 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3819:436 3835:452 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3819:439 3835:455 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3819:620 3835:636 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3819:828 3835:844 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3819:925 3835:941 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3819:1007 3835:1023 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3819:1061 3835:1077 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3819:1085 3835:1101 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3819:1337 3835:1353 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3819:1376 3835:1392 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3819:1571 3835:1587 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3819:1629 3835:1645 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3819:1680 3835:1696 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3819:1769 3835:1785 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3819:2306 3835:2322 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3819:2608 3835:2624 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3819:2618 3835:2634 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3819:2623 3835:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3819:2715 3835:2731 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3819:2803 3835:2819 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3819:2846 3835:2862 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3819:3078 3835:3094 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3819:3095 3835:3111 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3819:3166 3835:3182 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3819:3435 3835:3451 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3819:3587 3835:3603 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3819:3636 3835:3652 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3819:3909 3835:3925 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3819:4082 3835:4098 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3819:4142 3835:4158 0.82 + 0 0.82 HSCKBG:MMCRKNB ssitesim alignAG 3819:4201 3835:4217 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3819:4223 3835:4239 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3819:4246 3835:4262 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3819:4323 3835:4339 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3819:4499 3835:4515 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3864:79 3880:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3864:303 3880:319 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3864:507 3880:523 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3864:787 3880:803 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3864:1007 3880:1023 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3864:1081 3880:1097 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3864:1085 3880:1101 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3864:1135 3880:1151 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3864:1330 3880:1346 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3864:1337 3880:1353 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3864:1376 3880:1392 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3864:1597 3880:1613 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3864:1680 3880:1696 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3864:1906 3880:1922 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3864:2010 3880:2026 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3864:2017 3880:2033 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3864:2229 3880:2245 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3864:2358 3880:2374 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3864:2398 3880:2414 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3864:2608 3880:2624 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3864:2810 3880:2826 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3864:2837 3880:2853 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3864:2931 3880:2947 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3864:3147 3880:3163 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3864:3166 3880:3182 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3864:3295 3880:3311 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3864:3319 3880:3335 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3864:3365 3880:3381 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3864:3511 3880:3527 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3864:3587 3880:3603 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3864:3600 3880:3616 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3864:3636 3880:3652 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3864:3660 3880:3676 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3864:3813 3880:3829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3864:3879 3880:3895 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3864:3980 3880:3996 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3864:4201 3880:4217 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3864:4246 3880:4262 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3864:4499 3880:4515 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3875:79 3891:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3875:177 3891:193 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3875:303 3891:319 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3875:327 3891:343 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3875:436 3891:452 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3875:439 3891:455 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3875:620 3891:636 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3875:787 3891:803 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3875:925 3891:941 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3875:1081 3891:1097 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3875:1330 3891:1346 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3875:1376 3891:1392 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3875:1680 3891:1696 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3875:1906 3891:1922 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3875:1929 3891:1945 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3875:2074 3891:2090 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3875:2139 3891:2155 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3875:2229 3891:2245 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3875:2398 3891:2414 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3875:2551 3891:2567 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3875:2658 3891:2674 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3875:2715 3891:2731 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3875:2810 3891:2826 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3875:2846 3891:2862 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3875:3078 3891:3094 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3875:3095 3891:3111 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3875:3125 3891:3141 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3875:3147 3891:3163 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3875:3295 3891:3311 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3875:3365 3891:3381 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3875:3435 3891:3451 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3875:3511 3891:3527 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3875:3587 3891:3603 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3875:3636 3891:3652 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3875:3654 3891:3670 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3875:3909 3891:3925 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3875:3980 3891:3996 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3875:4142 3891:4158 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3875:4201 3891:4217 0.91 + 0 0.91 HSCKBG:MMCRKNB ssitesim alignAG 3875:4223 3891:4239 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3875:4317 3891:4333 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3875:4319 3891:4335 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3875:4323 3891:4339 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3875:4499 3891:4515 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3897:79 3913:95 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:177 3913:193 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:303 3913:319 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3897:327 3913:343 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:343 3913:359 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:408 3913:424 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3897:439 3913:455 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3897:828 3913:844 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:1061 3913:1077 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3897:1085 3913:1101 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3897:1571 3913:1587 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:1629 3913:1645 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:1680 3913:1696 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:1725 3913:1741 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3897:1906 3913:1922 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:1929 3913:1945 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:2010 3913:2026 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3897:2229 3913:2245 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:2398 3913:2414 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:2608 3913:2624 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:2618 3913:2634 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3897:2623 3913:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:2642 3913:2658 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3897:2803 3913:2819 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3897:2810 3913:2826 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3897:2813 3913:2829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:2863 3913:2879 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:3078 3913:3094 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:3095 3913:3111 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3897:3251 3913:3267 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:3365 3913:3381 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:3494 3913:3510 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3897:3525 3913:3541 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3897:3587 3913:3603 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3897:3636 3913:3652 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3897:3813 3913:3829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:3909 3913:3925 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3897:3980 3913:3996 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:4082 3913:4098 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:4111 3913:4127 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3897:4142 3913:4158 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:4201 3913:4217 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3897:4223 3913:4239 0.73 + 0 0.73 HSCKBG:MMCRKNB ssitesim alignAG 3897:4317 3913:4333 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3897:4323 3913:4339 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3897:4383 3913:4399 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3897:4386 3913:4402 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3897:4475 3913:4491 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3920:752 3936:768 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3920:787 3936:803 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3920:865 3936:881 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3920:925 3936:941 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3920:1061 3936:1077 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3920:1067 3936:1083 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3920:1135 3936:1151 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3920:1337 3936:1353 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3920:1376 3936:1392 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3920:1571 3936:1587 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3920:1929 3936:1945 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3920:2010 3936:2026 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3920:2017 3936:2033 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3920:2623 3936:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3920:2658 3936:2674 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3920:2715 3936:2731 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3920:2837 3936:2853 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3920:2846 3936:2862 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3920:3147 3936:3163 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3920:3319 3936:3335 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3920:3636 3936:3652 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3920:3660 3936:3676 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3920:3813 3936:3829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3920:4082 3936:4098 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3920:4142 3936:4158 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3920:4246 3936:4262 0.91 + 0 0.91 HSCKBG:MMCRKNB ssitesim alignAG 3920:4317 3936:4333 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3920:4319 3936:4335 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3920:4386 3936:4402 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3920:4458 3936:4474 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3920:4499 3936:4515 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3990:23 4006:39 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3990:100 4006:116 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3990:177 4006:193 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3990:303 4006:319 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3990:327 4006:343 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3990:408 4006:424 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3990:439 4006:455 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3990:507 4006:523 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3990:620 4006:636 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3990:752 4006:768 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3990:925 4006:941 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3990:1061 4006:1077 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3990:1067 4006:1083 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3990:1081 4006:1097 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3990:1085 4006:1101 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3990:1337 4006:1353 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3990:1376 4006:1392 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3990:1571 4006:1587 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3990:1597 4006:1613 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3990:1629 4006:1645 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3990:1712 4006:1728 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3990:1912 4006:1928 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3990:1929 4006:1945 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3990:2010 4006:2026 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3990:2074 4006:2090 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3990:2139 4006:2155 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3990:2218 4006:2234 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3990:2229 4006:2245 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3990:2306 4006:2322 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3990:2398 4006:2414 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3990:2551 4006:2567 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3990:2608 4006:2624 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3990:2618 4006:2634 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3990:2623 4006:2639 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3990:2642 4006:2658 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3990:2803 4006:2819 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 3990:2810 4006:2826 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3990:2837 4006:2853 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3990:2863 4006:2879 0.55 + 0 0.55 HSCKBG:MMCRKNB ssitesim alignAG 3990:2922 4006:2938 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3990:3095 4006:3111 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3990:3125 4006:3141 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3990:3251 4006:3267 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3990:3334 4006:3350 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3990:3365 4006:3381 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3990:3489 4006:3505 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3990:3494 4006:3510 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3990:3511 4006:3527 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3990:3525 4006:3541 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3990:3578 4006:3594 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 3990:3587 4006:3603 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3990:3636 4006:3652 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3990:3660 4006:3676 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3990:3813 4006:3829 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3990:3909 4006:3925 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3990:3980 4006:3996 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3990:4082 4006:4098 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 3990:4111 4006:4127 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 3990:4223 4006:4239 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 3990:4317 4006:4333 0.73 + 0 0.73 HSCKBG:MMCRKNB ssitesim alignAG 3990:4383 4006:4399 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3990:4386 4006:4402 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3990:4458 4006:4474 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 3990:4475 4006:4491 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 4117:327 4133:343 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4117:620 4133:636 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4117:787 4133:803 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 4117:865 4133:881 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4117:1007 4133:1023 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4117:1067 4133:1083 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 4117:1081 4133:1097 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4117:1085 4133:1101 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 4117:1135 4133:1151 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4117:1712 4133:1728 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4117:1769 4133:1785 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 4117:1869 4133:1885 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4117:1929 4133:1945 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4117:2010 4133:2026 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4117:2074 4133:2090 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4117:2218 4133:2234 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4117:2306 4133:2322 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4117:2398 4133:2414 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4117:2608 4133:2624 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 4117:2618 4133:2634 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4117:2623 4133:2639 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 4117:2658 4133:2674 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4117:2803 4133:2819 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 4117:2810 4133:2826 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4117:2813 4133:2829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4117:2837 4133:2853 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 4117:2846 4133:2862 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4117:2863 4133:2879 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4117:2922 4133:2938 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4117:3125 4133:3141 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 4117:3295 4133:3311 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4117:3365 4133:3381 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4117:3435 4133:3451 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4117:3489 4133:3505 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 4117:3511 4133:3527 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4117:3525 4133:3541 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4117:3578 4133:3594 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4117:3587 4133:3603 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4117:3660 4133:3676 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4117:4082 4133:4098 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4117:4223 4133:4239 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4117:4317 4133:4333 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4117:4383 4133:4399 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4117:4458 4133:4474 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:79 4172:95 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 4156:100 4172:116 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4156:177 4172:193 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 4156:327 4172:343 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:408 4172:424 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4156:436 4172:452 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 4156:439 4172:455 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 4156:752 4172:768 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4156:828 4172:844 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4156:925 4172:941 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 4156:1061 4172:1077 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 4156:1330 4172:1346 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:1376 4172:1392 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:1571 4172:1587 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 4156:1597 4172:1613 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 4156:1629 4172:1645 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 4156:1680 4172:1696 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:1725 4172:1741 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:1769 4172:1785 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4156:1869 4172:1885 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:2074 4172:2090 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:2139 4172:2155 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:2229 4172:2245 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:2306 4172:2322 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:2398 4172:2414 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4156:2551 4172:2567 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:2608 4172:2624 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:2618 4172:2634 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 4156:2642 4172:2658 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:2658 4172:2674 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:2803 4172:2819 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:2813 4172:2829 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:2846 4172:2862 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 4156:2863 4172:2879 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4156:2922 4172:2938 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4156:2931 4172:2947 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:3078 4172:3094 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 4156:3095 4172:3111 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:3166 4172:3182 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 4156:3251 4172:3267 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:3494 4172:3510 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4156:3511 4172:3527 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:3587 4172:3603 0.36 + 0 0.36 HSCKBG:MMCRKNB ssitesim alignAG 4156:3636 4172:3652 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:3909 4172:3925 0.27 + 0 0.27 HSCKBG:MMCRKNB ssitesim alignAG 4156:4082 4172:4098 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:4111 4172:4127 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4156:4142 4172:4158 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4156:4201 4172:4217 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:4223 4172:4239 0.45 + 0 0.45 HSCKBG:MMCRKNB ssitesim alignAG 4156:4386 4172:4402 0.18 + 0 0.18 HSCKBG:MMCRKNB ssitesim alignAG 4156:4458 4172:4474 0.09 + 0 0.09 HSCKBG:MMCRKNB ssitesim alignAG 4156:4475 4172:4491 0.36 + 0 0.36 gff2aplot-2.0.orig/examples/splice_sites/KCRB.AG.mm.gff0000664000000000000000000000046407667662613022574 0ustar rootroot00000000000000MMCRKNB embl exon 1711 1903 1.0 + 0 MMCRKNB MMCRKNB embl exon 2090 2244 1.0 + 1 MMCRKNB MMCRKNB embl exon 2322 2454 1.0 + 2 MMCRKNB MMCRKNB embl exon 2624 2795 1.0 + 1 MMCRKNB MMCRKNB embl exon 3381 3504 1.0 + 0 MMCRKNB MMCRKNB embl exon 3652 3841 1.0 + 2 MMCRKNB MMCRKNB embl exon 3925 4103 1.0 + 2 MMCRKNB gff2aplot-2.0.orig/examples/splice_sites/KCRB.GT.mm.gff0000664000000000000000000000046407667662613022617 0ustar rootroot00000000000000MMCRKNB embl exon 1711 1903 1.0 + 0 MMCRKNB MMCRKNB embl exon 2090 2244 1.0 + 1 MMCRKNB MMCRKNB embl exon 2322 2454 1.0 + 2 MMCRKNB MMCRKNB embl exon 2624 2795 1.0 + 1 MMCRKNB MMCRKNB embl exon 3381 3504 1.0 + 0 MMCRKNB MMCRKNB embl exon 3652 3841 1.0 + 2 MMCRKNB MMCRKNB embl exon 3925 4103 1.0 + 2 MMCRKNB gff2aplot-2.0.orig/examples/splice_sites/KCRB.mm_utr.gff0000664000000000000000000000020007667662614023165 0ustar rootroot00000000000000MMCRKNB embl utr 1363 1439 1.0 + 0 MMCRKNB MMCRKNB embl utr 1696 1903 1.0 + 0 MMCRKNB MMCRKNB embl utr 3925 4301 1.0 + 0 MMCRKNBgff2aplot-2.0.orig/examples/splice_sites/KCRB.hs.gff0000664000000000000000000000063707667662613022311 0ustar rootroot00000000000000HSCKBG embl utr 808 875 1.0 + 0 HSCKBG HSCKBG embl utr 1136 1340 1.0 + 0 HSCKBG HSCKBG embl exon 1148 1340 1.0 + 0 HSCKBG HSCKBG embl exon 1464 1618 1.0 + 0 HSCKBG HSCKBG embl exon 1691 1823 1.0 + 1 HSCKBG HSCKBG embl exon 2208 2379 1.0 + 0 HSCKBG HSCKBG embl exon 3050 3173 1.0 + 2 HSCKBG HSCKBG embl exon 3331 3520 1.0 + 1 HSCKBG HSCKBG embl exon 3600 3778 1.0 + 1 HSCKBG HSCKBG embl utr 3600 4075 1.0 + 0 HSCKBG