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Gyoto-1.2.0/ 0000775 0000000 0000000 00000000000 13023522573 0012615 5 ustar 00root root 0000000 0000000 Gyoto-1.2.0/.gitignore 0000664 0000000 0000000 00000001003 13023522573 0014577 0 ustar 00root root 0000000 0000000 *.fits
./gyoto
bin/gyoto
*.lo
*.o
ywrap.c
Makefile
autom4te.cache
.libs
config.log
config.status
doc/html/
doc/latex
*.la
.deps
*.pc
*.so
*~
libtool
config.h
include/GyotoConfig.h
include/stamp-h2
stamp-h1
yorick/stdplug/polishfit.i
yorick/yorick
yorick/setpaths.i
yorick/gyoto.info
yorick/yorick1
doc/user_guide/GyotoManual.aux
doc/user_guide/GyotoManual.bbl
doc/user_guide/GyotoManual.blg
doc/user_guide/GyotoManual.log
doc/user_guide/GyotoManual.out
doc/user_guide/GyotoManual.pdf
doc/user_guide/GyotoManual.toc
Gyoto-1.2.0/AUTHORS 0000664 0000000 0000000 00000001220 13023522573 0013660 0 ustar 00root root 0000000 0000000 Gyoto has been written starting in 2008 primarily by:
Frédéric Vincent [1, 2]
Thibaut Paumard [1]
Additional contributors:
Odele Straub [1]
The development team at Observatoire de Paris also includes:
Éric Gourgoulhon [2]
Guy Perrin [1]
Affiliations:
[1] Laboratoire d'études spatiales et d'instrumentation en
astrophysique (LESIA), Observatoire de Paris, CNRS, Université
Pierre et Maris Curie, Université Paris Diderot
5 place Jules Janssen, F-92190 MEUDON, FRANCE
[2] Laboratoire Univers et théories (LUTH), Observatoire de Paris,
CNRS, Université Paris Diderot
5 place Jules Janssen, F-92190 MEUDON, FRANCE
Gyoto-1.2.0/BUGS.md 0000664 0000000 0000000 00000004112 13023522573 0013675 0 ustar 00root root 0000000 0000000 # Known bugs affecting
This file is to list known bugs in Gyoto or its dependencies that
significantly affect Gyoto but are not easy to fix or workaround in
Gyoto.
## Boost.multiprecision 1.62.0 (other nearby versions presumably affected):
A bug makes multiprecision acos() never return in some
circumstances. This has caused gyoto hanging. As of writing, this is
fixed in the Boost development tree and worked around in the Debian
package for Gyoto. For further details and workarounds, see:
- https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=844490
- https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=844495
- https://svn.boost.org/trac/boost/ticket/12625
-- Thibaut Paumard, Thu Dec 08 2016.
## Clang/LLVM compiler (all versions), possibly other compilers:
Gyoto relies on proper delivery of SIGFPE when arithmetic errors occur
(division by zero, floating point overflows...). It does so by
enabling the right exceptions using feenableexcept from GNU fenv.h.
However, some compilers (clang/llvm, in particular) do not support
setting the floating-point environment and will happily optimize code
assuming that it is safe to divide by zero. We recommend staying away
from these compilers until this issue is fixed:
- https://llvm.org/bugs/show_bug.cgi?id=23707
- https://llvm.org/bugs/show_bug.cgi?id=8100
Alternatively, you may try to reconfigure Gyoto to not use fenv.h
and/or to not use any optimization: make clean ./configure
--without-fenv CFLAGS="-g -O0" CXXFLAGS="-g -O0" make
and see whether it works better for you.
If you experience such spurious SIGFPE inside the Yorick plug-in, an
ugly workaround is to call gyoto.fedisableexcept() right before the
offending Gyoto call. If at all possible, consider recompiling Gyoto
as explained above.
Note that loading some plug-ins (e.g. the lorene plug-in) may change
or reset the default floating-point environment. This is the case if
the plug-in, or one of the libraries it links with, has been compiled
with optimizations such as -ffast-math or gfortran.
-- Thibaut Paumard, Thu Dec 08 2016.
Gyoto-1.2.0/COPYING 0000664 0000000 0000000 00000104513 13023522573 0013654 0 ustar 00root root 0000000 0000000 GNU GENERAL PUBLIC LICENSE
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but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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along with this program. If not, see .
Also add information on how to contact you by electronic and paper mail.
If the program does terminal interaction, make it output a short
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Gyoto-1.2.0/ChangeLog 0000664 0000000 0000000 00000623475 13023522573 0014410 0 ustar 00root root 0000000 0000000 commit unknown
Author: Thibaut Paumard
Date: Mon, 12 Dec 2016 13:49:58 +0100
Releasing 1.2.0
commit b3052c5f8663e4b6c49256b5041bcd67a91c2d85
Author: Thibaut Paumard
Date: Mon Dec 12 12:57:47 2016 +0100
Add --version option to gyoto command-line tool
commit 6ca591a2660e1293b559af6c1e86015d7be0bd48
Author: Thibaut Paumard
Date: Mon Dec 12 10:45:37 2016 +0100
Support enroling MPI_COMM_WORLD in python/example-mpi.py
Apply the same heuristics and algorithm as in bin/gyoto.C to support
mpirun starting the worker process itself.
commit 87e8567f6c9bcd263a874bc1f11811556770c276
Author: Thibaut Paumard
Date: Sun Dec 11 20:46:35 2016 +0100
Correctly handle empty stry case in OscilTorus::emittingArea()
commit 09a179b9d5d070c949d0969221cc4efc0bdcc989
Author: Thibaut Paumard
Date: Sun Dec 11 20:08:45 2016 +0100
Remove spurious cerr
commit 63632ea68aee0e6ff3d2e58d13991ce2148ece06
Author: Thibaut Paumard
Date: Sun Dec 11 19:33:11 2016 +0100
Implement thread-safety declaration
Thread-unsafe classes declare themselves as such, so that NThreads is
ignored when multi-threading would cause erroneous results.
commit b524fef7147c66ec16190b4c8f7e31adbaa1e64c
Author: Thibaut Paumard
Date: Sat Dec 10 20:44:57 2016 +0100
NumericalMetricalLorene is mature: not WIP anymore
Stop inheriting from WIP
commit 22d3e7f974b8f52dbe40b3776bdb2c90d7e9261c
Author: Thibaut Paumard
Date: Sat Dec 10 18:11:35 2016 +0100
Releasing 1.1.2
commit 039f3b98a6ddfa3a99470f2a9b50b9bfcabc97e3
Author: Thibaut Paumard
Date: Sat Dec 10 15:53:19 2016 +0100
Change subcontractor APIs to use a vector
It is now possible to specify several plugins for loading an
object. Useful when a plug-in depends on another one. In XML:
Plugins are loaded in order and looked into in reverse order
for the class.
commit 78608e5a49a349166d15b570ffcec5c9a2754571
Author: Thibaut Paumard
Date: Sat Dec 10 13:15:06 2016 +0100
Store plug-in name as given by user
When plu-gin name is actually a file name, loadPlugin() determines the
actual plug-in name to find out the intilialization
function. Nevertherless we prefer to store the file name in that case
so users can load several versions of the same plug-in e.g. for
testing purposes.
commit 5f35070ab4371ab0829de38585b635bd3d0cf51f
Author: Thibaut Paumard
Date: Sat Dec 10 12:34:15 2016 +0100
Merging branch master into track-plugin
commit b0413450c29b5a2fca5af1ac30c30954e23f4da8
Author: Thibaut Paumard
Date: Fri Dec 9 19:18:24 2016 +0100
Rename the breathing modes in OscilTorus
BreathingMinus -> Plus
BreathingPlus -> Breathing
commit eb117650ade102b30eae37f62f6669c366c12776
Author: Thibaut Paumard
Date: Fri Dec 9 18:47:52 2016 +0100
Correct style in Deformed Torus
Use an enum and strin property for perturb_kind_, rename r_center_ to
c_ and Rcenter to LargeRadius like the other torii, rename Param*
properties to just *.
commit 9d68e18c39fb952b932390f35445ecf6d1f53d9c
Author: Thibaut Paumard
Date: Fri Dec 9 16:43:25 2016 +0100
New Astrobj: OscilTorus
commit 4811d8dc0bcba755415ebdf03040177c2b2b36cf
Author: Thibaut Paumard
Date: Fri Dec 9 16:39:51 2016 +0100
New convenience macros in GyotoProperty.h
GYOTO_PROPERTY_ACCESSORS_SPECIAL
GYOTO_PROPERTY_ACCESSORS_GEOMETRICAL_SPECIAL
GYOTO_PROPERTY_ACCESSORS_UNIT
commit a187bcf6aa168acfcd1bf9c965726624668f79f6
Author: Thibaut Paumard
Date: Thu Dec 8 16:59:25 2016 +0100
New Astrobj: InflateStar
commit e349992c3d98a2b04563a655195760b3a55eca06
Author: Thibaut Paumard
Date: Thu Dec 8 15:28:06 2016 +0100
New Astrobj: EquatorialHotSpot
commit 031d97346f3e53780b59d0d3e442096749e6a1f2
Author: Thibaut Paumard
Date: Thu Dec 8 15:17:17 2016 +0100
Fix memory management in DynamicalDisk
Actually free all memory in the destructor and before reading new
files; initialize pointers to NULL and only delete them when they are
not NULL.
commit ed3f2912cb667043bce77208b0d2e5d12053a04d
Author: Thibaut Paumard
Date: Thu Dec 8 13:05:33 2016 +0100
New Astrobj: DynamicalDiskBolometric
commit b350fd5f5551aef5262e05c2ba1eab3f8d81505a
Author: Thibaut Paumard
Date: Thu Dec 8 12:10:35 2016 +0100
Rename property ModifCS to DzetaCS in Metric::ChernSimons
commit 65af14b090e3f639a70bd8749894f1a25068856f
Author: Thibaut Paumard
Date: Thu Dec 8 12:05:55 2016 +0100
New Astrobj: DeformedTorus
commit 925fe15b6d6c2ab0e5d4bf66d91a31b60c9a01d3
Author: Thibaut Paumard
Date: Thu Dec 8 11:34:37 2016 +0100
Use AM_INIT_AUTOMAKE([foreign]) in configure.ac
This way the fact that README is called README.md does not trigger an
error.
commit ee0010f3a53d1b7d51a49ba1f4d6f3d618fa79ea
Author: Thibaut Paumard
Date: Thu Dec 8 11:19:35 2016 +0100
Add link to homepage in README.md
commit f4b30574e12948917f8cab75b3804f2fd8eb79fb
Author: Thibaut Paumard
Date: Thu Dec 8 11:16:28 2016 +0100
fixup README.md
commit ca95a5d3a4c96c4033b621cb18ade42d74faee99
Author: Thibaut Paumard
Date: Thu Dec 8 11:12:24 2016 +0100
Update README and rename it README.md
Also fix broken links to BUGS.md in INSTALL.Gyoto.md
commit 59f31b293055bef1716a4867f91daf32106e698a
Author: Thibaut Paumard
Date: Thu Dec 8 09:51:54 2016 +0100
Enhance user documentation about known bugs and to-do list
commit 78818a4c1101a65f18a9a596823442501216e09e
Author: Thibaut Paumard
Date: Thu Dec 8 08:54:32 2016 +0100
NumericalMetricLorene is mature
Use WIP("") in constructor to not issue the warning. With the next ABI
change, we should stop inherinting from WIP entirely.
commit 561872afd56cfd5bd84bd3f7f5552193649bbd25
Author: Thibaut Paumard
Date: Wed Dec 7 22:27:05 2016 +0100
Allow loading plug-in from path
e.g. gyoto -p./libgyoto-foo.so -l
commit 5c9fdfdeca8cfcd804a85e9199cbe2a595024361
Author: Thibaut Paumard
Date: Wed Dec 7 21:49:36 2016 +0100
Issue a useful message when a plug-in cannot be loaded
Gyoto tries to load plug-ins from several places. When a plug-in could
not be loaded, Gyoto used to issue the error message of only the last
attempt, which was often "no such file or directory". With the patch,
the error messages of all the attempts are displayed.
commit 0c18e20e0a5978f3a9468d106b34172206d7c8d0
Author: Thibaut Paumard
Date: Wed Dec 7 21:29:31 2016 +0100
New Metric: RezzollaZhidenko
commit fe84646be29f65cdca27a1bf808df3935b8f527f
Author: Thibaut Paumard
Date: Wed Dec 7 18:39:25 2016 +0100
New Metric: ChernSimons
commit 9c37464e7c317a0edd685e8bd80588a910516be0
Author: Thibaut Paumard
Date: Tue Dec 6 22:43:19 2016 +0100
Support colon syntax for mpirun
Support spawning gyoto-mpi-worker directly from mpirun on any MPI
implementation (that supports the MIMD model), for any Gyoto interface
(gyoto, Python, Yorick...).
Just start the processes with something like:
mpirun -np 1 : -np 8 gyoto-mpi-worker.
In the process, use Scenery::mpiSpawn(-1) to use the
processes available in the WORLD communicator instead of spawning new
ones.
'gyoto' still needs to know that it has to use MPI parallelisation, so
use of the -P option is still mandatory (except under Open MPI):
mpirun -np 1 gyoto -P1 : -np 8 gyoto-mpi-worker.
commit e46518508a1ffbd62f5d7bf4a16025b3929c32fd
Author: Thibaut Paumard
Date: Tue Dec 6 18:01:57 2016 +0100
gyoto: Support -np option in Open MPI
MPI support in Gyoto has been implemented using the singleton
approach, where a single processess exists at start-up and spawns its
worker as needed using MPI_Comm_spawn().
With this commit, the gyoto command line tool also supports the more
traditional approach where N processes are started directly by
mpirun. This is only for the gyoto command-line tool (so, not for the
Python or Yorick interfaces), and only for Open MPI (not e.g. MPICH).
commit eeaf74670926be5a2e2e2e4db1b10745fb5caf85
Author: Thibaut Paumard
Date: Fri Nov 4 11:24:04 2016 +0100
Update documentation
commit 5ec7cc1587c00c1eaf0d50e96683387e04824f70
Author: Thibaut Paumard
Date: Fri Nov 4 11:09:13 2016 +0100
Update INSTALL.Gyoto.md
commit ea49cda36b6d6de133546fc298c80c36f2143c1b
Author: Thibaut Paumard
Date: Fri Nov 4 11:08:22 2016 +0100
Update INSTAL.Gyoto.md
commit 153aaf51016fd471ff540dd31cdb497bfd207b3a
Author: Thibaut Paumard
Date: Fri Nov 4 11:04:28 2016 +0100
Update INSTALL.Gyoto and move is to INSTALL.Gyoto.md
commit debdbe925d59a5c4be43d71e40200f7fd224a940
Author: Thibaut Paumard
Date: Mon Oct 31 11:08:12 2016 +0100
Releasing 1.1.1
commit f4af3a5198d87ce4113a90fb7cf753b3731044ae
Author: Thibaut Paumard
Date: Mon Oct 31 10:02:08 2016 +0100
Update copyright years and other cosmetic changes for next release
commit c28648aff060bbda5c9dce2588c8666d181fa98e
Author: Thibaut Paumard
Date: Sun Oct 30 10:03:30 2016 +0100
Use only major library version in GYOTO_PLUGDIR
Up to know, the versioned directory for plug-ins used the full libtool
versinfo, changing with each new library soname revision. From know
onwards, it is only the major number, which is kept for
backward-compatible changes. Users will not need to recompile their
plug-ins when upgrading to a backwarsd-compatible version of Gyoto.
commit 00d66f0a3279b336280240bb19a2b3b0a86c2a76
Author: Thibaut Paumard
Date: Sat Oct 29 16:42:01 2016 +0200
Introduce localpkglibdir to install plug-ins
- lib/Register.C: look for plug-ins in localpkglibdir;
- configure.ac: determine a sensible value for localpkglibdir;
- lib/gyoto.pc.in: store this information;
- plugins/null: examplify how to install there safely;
- doc/user_guide: document this change.
commit ebb0ef13dced5c31984f166d99aa6c26390824b2
Author: Thibaut Paumard
Date: Fri Oct 28 22:12:28 2016 +0200
plugins/null/configure: check for MPICXX and CXX from gyoto.pc
commit aa6594aab69059bf72d38c79ee77c0a1e722d91c
Author: Thibaut Paumard
Date: Sat Oct 29 16:42:01 2016 +0200
Introduce localpkglibdir to install plug-ins
- lib/Register.C: look for plug-ins in localpkglibdir;
- configure.ac: determine a sensible value for localpkglibdir;
- lib/gyoto.pc.in: store this information;
- plugins/null: examplify how to install there safely;
- doc/user_guide: document this change.
commit 1a903a7440a529639bba80d10e9407ff40ad711c
Author: Thibaut Paumard
Date: Fri Oct 28 22:12:28 2016 +0200
plugins/null/configure: check for MPICXX and CXX from gyoto.pc
commit 6e1c6aa8104cd11ef11982868bac63e785c3cf12
Author: Thibaut Paumard
Date: Fri Oct 28 19:43:48 2016 +0200
Commit autoreconf products and update git-post-merge script
(cherry picked from commit 63b5bf61f21d0e1b425795737ec1d2bd3cf570c8)
Conflicts:
plugins/null/aclocal.m4
commit 988ebdb08d4ba4c2d6caaf39ff5719731c3519ec
Author: Thibaut Paumard
Date: Fri Oct 28 19:06:49 2016 +0200
Add CXX variable to gyoto*.pc
commit d6bb1a07f5f4edc01ef3696e19bb0fcf4d59e52d
Author: Thibaut Paumard
Date: Fri Oct 28 17:14:02 2016 +0200
plugins/null: don't use mpic++; don't use LORENE.
commit 72ad9b06b6be7cbfc725ceaed04a26f551d0ed65
Author: Frédéric Vincent
Date: Thu Oct 27 18:00:44 2016 +0200
Fix copy constructor of Page-Thorne disk
commit a7ffea424d32afc247465c33900fe8a64f2ad93c
Author: Frédéric Vincent
Date: Thu Oct 27 18:00:44 2016 +0200
Fix copy constructor of Page-Thorne disk
commit 63b5bf61f21d0e1b425795737ec1d2bd3cf570c8
Author: Thibaut Paumard
Date: Thu Oct 27 16:21:03 2016 +0200
Commit autoreconf products and update git-post-merge script
commit 4dde0a63601316839d433d4560ce15fb23c5f0c5
Author: Thibaut Paumard
Date: Thu Oct 13 22:45:34 2016 +0200
Improve plug-in example in plugins/null and document it in the user manual.
commit 6bbadeaa2af76014d83c99090af1271148adf49e
Author: Thibaut Paumard
Date: Thu Oct 13 18:15:26 2016 +0200
Add null plug-in as an example
commit ece3df86a402d1c0d02d31706a344b32c32d5f88
Author: Thibaut Paumard
Date: Mon Oct 3 11:27:05 2016 +0200
NEXT 2016/10/03 BUG
* Yorick: actually implement `picture' painter for the matte_paint
framework. Allow using any two or three-dimensional image or
stack of images in the `picture' and `panorama' painters.
commit 649d76dce7a90a15d55ec444a9d7b50f5868a6f8
Author: Thibaut Paumard
Date: Wed Sep 28 12:21:32 2016 +0200
NEXT 2016/09/28 API
* New functionality: the plug-in from which each subcontractor is
registered is now tracked, so that it becomes possible to look
for a subcontractor matching a specific kind and plug-in. We
introduce the function Gyoto::requirePlugin() in addition to
Gyoto::loadPlugin(). The subcontractor signature is changed to
accept a second parameter, which breaks the API.
commit 22c8c78b2388b987ee5afca27706e2d54c4a3c0a
Author: Thibaut Paumard
Date: Thu Sep 15 22:22:29 2016 +0200
* configure --enable-hardening now also activates -fPIE and -pie for executables
commit 633157529a837b21ee38373928f6c32a75554769
Author: Thibaut Paumard
Date: Thu Sep 15 18:32:01 2016 +0200
* Use setuptools also in setup_lorene.py
commit acbcd37ef3a83d609d36008029c6d50e2b9e02df
Author: Thibaut Paumard
Date: Thu Sep 15 18:27:42 2016 +0200
* Fix typos detected by lintian
commit d53a546a2bea1799cf129405e8657dfb66c20e4b
Author: Thibaut Paumard
Date: Mon Sep 12 19:20:28 2016 +0200
Releasing 1.1.0
commit 5f9eb5090a5734847f89fb86510aa0324ae14b85
Author: Thibaut Paumard
Date: Mon Sep 12 19:10:50 2016 +0200
python: fix make check
commit 18b2c623da3c8abe7c808ef6eeb850eba58f2dd5
Author: Thibaut Paumard
Date: Wed Sep 7 15:10:54 2016 +0200
Make sure make check works even when built out-of-tree;
Remove more files generated by "make install" in "make clean".
commit f066d3f67b77fcf898e7632f71c853f7749b28b0
Author: Thibaut Paumard
Date: Wed Sep 7 11:14:46 2016 +0200
Fix bug in bin/Makefile.am so that make check-*mpi works again
commit 1fff8875649cfe652a88c3206e0395e7ec2ffa01
Author: Thibaut Paumard
Date: Wed Sep 7 10:56:45 2016 +0200
python: use setuptools' mechanism for specifying libraries as passing them in LDFLAGS sometimes fails (LDFLAGS being before gyoto_wrap.o on the linker command line)
commit 8c6328b0a5aa9cc4742b7cae6dfea1ff62a6dd2e
Author: Thibaut Paumard
Date: Fri Sep 2 16:20:34 2016 +0200
Add git-post-merge script
commit a13256722b9354bd88cf8c373e1d1d604fb37c67
Author: Frederic
Date: Thu Mar 24 18:39:51 2016 +0100
Photon.C: adding a flag to highligh the shadow region in a strong-field image
commit 6d8ee111650d52a03bb341a0e195610c63153ffb
Author: Frederic
Date: Thu Mar 17 18:15:55 2016 +0100
PowerLawSpectrum: Adding cut-offs
commit 67dc38bcaba46606f51fc62ecda177093d643603
Author: Thibaut Paumard
Date: Wed Feb 10 23:08:28 2016 +0100
Hardcode last change date in the user manual and recall in README.Developpers to update it before releasing.
commit 9006be3211f0daeaf32f1ff49a4b8accb1e7eb48
Author: Thibaut Paumard
Date: Wed Feb 10 23:06:42 2016 +0100
Add lib/.libs to LD_LIBRARY_PATH of CHECK_CMD in bin/Makefile.am to let the test suite run through even when the libtool wrapper does not do it already.
commit 4441de41ede5e6260c8fa4f0fbcf4e5702a24d74
Author: Frederic
Date: Tue Jan 26 17:40:54 2016 +0100
DirectionalDisk: adding cutoff in lamp/disk frames
commit 6eba7e9ab94e1d54f36403a3e68a1b0b00f86bc7
Author: Frederic
Date: Mon Oct 19 12:20:56 2015 +0200
NumericalMetricLorene::setMetricSource: restoring the change of dzpuis, finally needed...
commit f2a85f66db21f2269dcb063172c444c9443e4926
Author: Frederic
Date: Fri Oct 16 14:44:58 2015 +0200
NumericalMetricLorene::setMetricSource: removing the change of dzpuis on Kij, needed in outdated version of astrobjs, not needed now
commit 7eb378ab45c5983ee4f2282bc2275702cade212c
Author: Frederic
Date: Wed Sep 16 15:47:23 2015 +0200
KerrKS.C: changing condition in stopcondition
commit 492b350e36cdb680323c3c5d5d59e753e2db4e36
Author: Frederic
Date: Wed Sep 16 15:05:53 2015 +0200
Worldline::xFill: adding a test on the metric stop condition
commit 877a717a85eb53b9a5f52d2a96443b397ea47983
Author: Thibaut Paumard
Date: Fri Jul 31 14:19:37 2015 +0200
Fix memory leak in Worldline::setInitCoord
Previously, setInitCoord would always reset i0_ to 0 for massive particles. This lead to memory leak when using a Star instance repeatedly for integrating backward in time. The fix consists in not changing i0_ if the Worldline is effectively reset.
commit 12e57fffdc93163197c985cefe0db30ed7610cab
Author: Thibaut Paumard
Date: Fri Jul 31 14:12:25 2015 +0200
Fix StarTrace, broken by recent changes in Worldline
Changes in constness of array parameters in virtual Worldline methods were not propagated to their StarTrace implementation.
commit 392a409e057437c9434df749c59ced6bee095c78
Author: Thibaut Paumard
Date: Wed Jul 29 18:21:54 2015 +0200
Fix exception support in Python 3
commit f99b60e1ba31ff873207f554e5a0076cb1a9c91c
Author: Thibaut Paumard
Date: Wed Jul 29 18:20:47 2015 +0200
Mostly fix out-of-tree build of Python extension
'make check' requires making a symling to the test directory
commit d452384477957d84c5b61181597ad1083ef29ee2
Author: Thibaut Paumard
Date: Wed Jul 29 15:06:07 2015 +0200
Add debug output in Worldline::xExpand()
commit 1a5aea72fbe2f53f85b09443d9d7385e221daefe
Author: Thibaut Paumard
Date: Wed Jul 29 15:00:55 2015 +0200
House-keeping
+ Fix const-ness of input arrays in Metric classes to get a nicer default Python interface
+ Make a virtual destructor in Functors
+ Fix a couple of typos and doc formatting in NulmericalMetricLorene
+ Add nicer Python interfaces for some Metric APIs that return an array
commit 0e457b87f68d2bf565fd17ee5292d37687cf9951
Author: Thibaut Paumard
Date: Wed Jul 8 21:22:28 2015 +0200
Support ARGOUT_ARRAY1 arguments for Worldline in Python
commit 734fee255b3d96eebade444dd0a379d979c21471
Author: Thibaut Paumard
Date: Wed Jul 8 20:47:36 2015 +0200
Worldline::setInitCoord and friends take const arguments
commit cb7a7eb50abf40ac0fe0ce989072e7f9fd3fc68e
Author: Thibaut Paumard
Date: Tue Jul 7 13:12:24 2015 +0200
Fix retrieveing PALN, Argument and Inclination with unit
Setting has always been correct. Retrieving was applying conversion
from unit to radians instead of the reverse.
commit 3979b28c8286998ba5ba6ba0c09e8a7a0c33a52f
Author: Thibaut Paumard
Date: Mon Jul 6 14:58:54 2015 +0200
Fix FTBFS when NumPy headers are in odd directories
commit 1fe99f451a04f70824d0a58bb0cc0cc5ed0bfaaf
Author: Thibaut Paumard
Date: Mon Jul 6 14:57:35 2015 +0200
Fix FTBFS with some compilers due to implicit narrowing conversion
commit 65de725cf92b249483a5b298a9f238ea38a344ce
Author: Thibaut Paumard
Date: Mon Jul 6 14:56:26 2015 +0200
Start unit testing of Metric un Python and fix Python example
commit cbc00e903baf43e5e3c17258b7f343caf9bdeeb9
Author: Thibaut Paumard
Date: Mon Jul 6 14:55:06 2015 +0200
Fix compiler warning concerning ambiguous alse statement in KerrKS.C
commit 0032899bc30066d753dc63dacfcefd47c59c8cb3
Author: Thibaut Paumard
Date: Fri Jul 3 15:22:34 2015 +0200
Add Python unit tests around Property
commit 16ebb312912352ec2456c6486442773be8f7e4ed
Author: Thibaut Paumard
Date: Fri Jul 3 15:19:36 2015 +0200
Improve documentation
Fix typo in include/GyotoSpectrometer.h; add or improve Property doc
strings in Worldline, Astrobj, FixedStar, KerrBL, KerrKS, Metric,
Minkowski, Screen, Spectrometer, StarTrace, ThinDisk, Torus,
UniformSpectrometer and UniformSphere.
commit c530a42a9f6495a0013882c3e15a9893367f76bc
Author: Thibaut Paumard
Date: Fri Jul 3 15:17:15 2015 +0200
Add stringification macro in GyotoDefs.h
commit 4b01b1d34523c7c31b4250d3cc115044beb66cf5
Author: Thibaut Paumard
Date: Thu Jul 2 19:28:53 2015 +0200
Test Gyoto::Value in Python extension. Add toScreen and toSizeT, fix toVULong.
commit 7ab5bd943f7d93cf8b46056aa1c6033a190e685e
Author: Thibaut Paumard
Date: Thu Jul 2 14:25:20 2015 +0200
Python extension: add conversion Unit -> str, add test suite
commit 0200284c1bfb66ff24a248e5dd854d3af99d878f
Author: Thibaut Paumard
Date: Thu Jul 2 11:12:55 2015 +0200
Add test_getErrcode(self) in python/tests/test_error.py
commit 190ea276ea63a974800a65d573d2eeb387cc4787
Author: Frederic
Date: Thu Jul 2 11:16:42 2015 +0200
PolishDoughnut: adding computation of r_torus_outer in angmomrinner()
commit e3b9013d46d5505bb31fe2380124caf041b135bb
Author: Thibaut Paumard
Date: Thu Jul 2 08:55:24 2015 +0200
Introduce python/gyoto_swig.h and gyoto_std_swig.h
This simplifies the maintenance of Python extensions for external
plug-ins: instead of hardcoding the #includes and function prototpes
needed to import gyoto.i and gyoto_std.i, one can just #include the
corresponding header. At some point it would be great to find how to
preprocess the information directly from the .i files, if that is
possible.
commit 89a093351b54c6f33c69badb75eae4c3912affc1
Author: Thibaut Paumard
Date: Wed Jul 1 17:14:27 2015 +0200
In Python extension, actually raise gyoto.Error exceptions
throwError() in C++ code will result in gyoto.Error being raised in a
catchable fashion in Python code. Test this functionality in the test
suite.
commit 3466428d85eac95beb6788d7cd8e3d5b33094c5c
Author: Thibaut Paumard
Date: Tue Jun 30 12:02:36 2015 +0200
Fix check-* targets
In bin, fix check-lorene* which where recently broken. In yorick/, fix
check-mpi which worked only with gyoto installed.
commit 08a94afcbe14b82370c8d0c194359cdc0c3399db
Author: Thibaut Paumard
Date: Tue Jun 30 12:00:53 2015 +0200
Implement test suite in Python extension
Use setuptools instead of distutils and start implementing a test suite using it.
commit f9fda308079dcde793225c75b5c000f2c23300ba
Author: Thibaut Paumard
Date: Tue Jun 30 11:59:13 2015 +0200
Remove declaration of PolishDoughnut::operator=()
It was never implemented and we don't intend on implementing it.
commit de1cf5da65aaf7e6ceb44ca30cbcf2fd218bbb55
Author: Thibaut Paumard
Date: Tue Jun 30 11:57:58 2015 +0200
Remove macro GYOTO_USE_LORENE
It is useless: the base code should not behave differently
depending on whether or not the lorene plug-in is compiled,
as it can be compiled separately.
commit 703ed2e369a10f22cd84bdf71affda90fc0e70f0
Author: Thibaut Paumard
Date: Mon Jun 29 16:00:11 2015 +0200
Copy GNU INSTALL file instead of using symlink
commit 5d09f067d7c00c5c6bd7a954533c2fc968088996
Author: Thibaut Paumard
Date: Fri Jun 26 09:29:10 2015 +0200
Releasing 1.0.2
commit a7d75d39b03b42d195dbc5b5bc44ad4813cfe827
Author: Thibaut Paumard
Date: Fri Jun 26 08:13:05 2015 +0200
Few more lines in python/example.py
commit daaa062477347a09855a3e493e212e7e9fd6ffc9
Author: Thibaut Paumard
Date: Thu Jun 25 22:13:24 2015 +0200
Allows passing NULL to Scenery::Subcontractor(fmp)
commit 73d30a082991cfb3f515dce3116ee1988c4c6a0e
Author: Thibaut Paumard
Date: Thu Jun 25 19:07:42 2015 +0200
Use NumpY arrays as much as possible in Python extension: checked Worldline and Screen
commit 713bba4ae0e3c4c8c15ecf0e79663897dcddbc60
Author: Thibaut Paumard
Date: Wed Jun 24 20:50:38 2015 +0200
Add flared disk Python example
commit 3f4224fef02464f1406cc7af1ba4ad7764bb5428
Author: Thibaut Paumard
Date: Wed Jun 24 18:10:19 2015 +0200
Always check whether a link is necessary in python plugin
Follow symlinks recursively. Use canonical name as plug-in nam, make
symlink if differenct from basename $PYTHON.
commit e08b3090bfcb4a732304c73878897d1086a3e41f
Author: Thibaut Paumard
Date: Wed Jun 24 17:39:22 2015 +0200
If Python module contains only one class, use it by default.
commit 08b32d2a25fae966f9faad047fbdf64187ebe038
Author: Thibaut Paumard
Date: Wed Jun 24 16:18:24 2015 +0200
Make InlineModule more elegant and effective for Python 3.4
commit 867dd7151c10362c43eab739e39c083fc0133171
Author: Thibaut Paumard
Date: Wed Jun 24 13:56:58 2015 +0200
Support InlineModule in python2.7 plug-in
commit f676e0e83a673e1df1f3ce2e22a715dc89a6ff63
Author: Thibaut Paumard
Date: Tue Jun 23 15:03:43 2015 +0200
Fix make uninstall to remove the python extension
commit 877c1e6becc6356cf9c616d9fc975952d777647f
Author: Thibaut Paumard
Date: Tue Jun 23 14:04:00 2015 +0200
Do not use versionned sonames for delopend plug-ins
commit 06d6c425df78028ab32388baaefdbd4d98a4c396
Author: Thibaut Paumard
Date: Mon Jun 22 18:09:01 2015 +0200
Fix CPPFLAGS for GCC 5 (add -P flag)
commit 4d482e24db6b8d26f74b13b1bfd5320f2db0fb68
Author: Thibaut Paumard
Date: Mon Jun 22 14:32:11 2015 +0200
Improve doxygen documentation
commit 68336a864d1f8a14f70df3f7900a4baef2ab2966
Author: Thibaut Paumard
Date: Mon Jun 22 11:40:42 2015 +0200
Document the python plug-in in the Gyoto manual
commit ab8d0dae9e93a2057939e266034d53bf55e3b1cc
Author: Thibaut Paumard
Date: Mon Jun 22 10:30:28 2015 +0200
Include GyotoPython.h in the doxygen documentation
commit e99cdb8496b2846ba5ab45a515aef95e33550423
Author: Thibaut Paumard
Date: Sun Jun 21 21:47:35 2015 +0200
Link python plugin to default, numbered version
commit 7b09d1189fa847f4c9ad2c9f036dbfc2c1d8e118
Author: Thibaut Paumard
Date: Sun Jun 21 18:25:20 2015 +0200
Fix import_array call in plugin/python to compile fine with Python < 3
commit 29946aaa3317f67145545cf57b255a5e0a91e115
Author: Thibaut Paumard
Date: Sun Jun 21 12:41:09 2015 +0200
Configure and build Python extension automatically
commit eea0b6365b9b0ef6ac9861e5de138df22436e414
Author: Thibaut Paumard
Date: Sun Jun 21 11:45:34 2015 +0200
Configure and build plugins/python automatically
Pass --without-python to disable.
commit 9952138c789f85308aae4b777539ded41be6f22a
Author: Thibaut Paumard
Date: Sat Jun 20 19:43:19 2015 +0200
Enhance documentation in GyotoPython.h
commit 4e45039dfba85fdbdc136a40e0f39426bacd3dee
Author: Thibaut Paumard
Date: Sat Jun 20 14:40:12 2015 +0200
In python plug-in, store spherical and mass as attributes rather than items
commit 154407301f45d4e7fb0345ac648cd3978ead08ba
Author: Thibaut Paumard
Date: Sat Jun 20 02:08:34 2015 +0200
Set `this' in Python classes (python plug-in)
commit 18af369b2153ab8c975f9976e01af1d5327b2918
Author: Thibaut Paumard
Date: Sat Jun 20 02:06:52 2015 +0200
Move Astrobj::Standard to the main library
commit 22d6e99794f4ee8874ef8e42dd1fee517d582b9c
Author: Thibaut Paumard
Date: Fri Jun 19 03:04:05 2015 +0200
Add examples for Astrobj::Python::*
And remove blanck characters in plugins/python/lib/ThinDisk.C
commit ac832c7c053934bf60e4417bf1d85835b021d47f
Author: Thibaut Paumard
Date: Fri Jun 19 02:57:55 2015 +0200
Add Astrobj::Python::ThinDisk
commit 6d879c0dbca7a347f2f3aa1ee46b1b5cfabc2e24
Author: Thibaut Paumard
Date: Fri Jun 19 02:50:18 2015 +0200
Remove Astrobj::ThinDisk::emission, which was never called
It had the wrong signature and the implementation in Generic was used.
commit a69ee5e49256c2b05d8cbad9cad2a79d97e1461a
Author: Thibaut Paumard
Date: Fri Jun 19 02:01:56 2015 +0200
Fixup: add plugins/python/lib/Standard.C
commit 8c3310b2c15ef0f8dba9ba803deb32136dd47523
Author: Thibaut Paumard
Date: Fri Jun 19 01:50:20 2015 +0200
Use helper functions consistently in python plug-in
commit 52fa25bb2a46f6a81a7f45bcc5af29165d318d10
Author: Thibaut Paumard
Date: Fri Jun 19 01:37:49 2015 +0200
Implement Astrobj::Python::Standard
commit 1915083cb82cf79b12177d48903de5267fcaf04c
Author: Thibaut Paumard
Date: Thu Jun 18 17:41:23 2015 +0200
Add "." to python path in libgyoto-python
commit 23e74e39575bd99ce4cf216a61ed9c46fcba6aa7
Author: Thibaut Paumard
Date: Thu Jun 18 17:18:40 2015 +0200
Implement Gyoto::Metric::Python, document the Python plug-in
commit d9ac54ea9cc17a149bb6d5ca7dddda39b4d472b7
Author: Thibaut Paumard
Date: Wed Jun 17 22:41:45 2015 +0200
Allow overloading Spectrum::operator() in python plug-in
By checking whether __call__ accepts the vararg *args.
commit 3d9babaf98453fab0c528d3e87e8ed44ff437f3e
Author: Thibaut Paumard
Date: Wed Jun 17 21:36:28 2015 +0200
Replace setParameters by __setitem__ in python plug-in
Also adapt the examples to show a minimal example (BlackBody6000) and
a maximal example (PowerLaw).
commit 2011feb60b77ab5adecd498cece6d2d434c3b721
Author: Thibaut Paumard
Date: Wed Jun 17 19:38:20 2015 +0200
In python plug-in, store __call__ reference
In order to not look for it at each iteraction. Ought to be slightly faster.
commit 068387ab15457ca9d36633d2a39fb8c5dd373120
Author: Thibaut Paumard
Date: Wed Jun 17 18:28:04 2015 +0200
Add optional integrate method to Spectrum::Python, add examples
commit b154942ce6a81d18fc29c6c20c410ccc2abbe1af
Author: Thibaut Paumard
Date: Wed Jun 17 12:53:38 2015 +0200
Allow versionned name for the Python plug-in
E.g. if $PYTHON is python3.4, then the plug-in will also be called
python3.4 (as in libgyoto-python3.4.so). This way we can build and
install several versions of the plug-in, that will run in the various
interpreters. Note that the plug will not run in python2.7 if compiled
with python3.4.
commit 0fb7f3003deafdc728609b88802bb906ed077873
Author: Thibaut Paumard
Date: Wed Jun 17 12:49:31 2015 +0200
Look for second, symbol constant name for plugin initialization
Look for __GyotoPluginInit in addition to
__GyotoInit. This allows to contain
characters not acceptables in function names, e.g. 'python3.4'.
commit a6f21548c3dfa027a40b2a76a79f56334365fc0a
Author: Thibaut Paumard
Date: Wed Jun 17 12:25:00 2015 +0200
Make the python plug-in work with both python2.7 and 3.4
commit cf6a087e6e1e346354ddc6c37b766b843484699e
Author: Thibaut Paumard
Date: Wed Jun 17 04:17:29 2015 +0200
Add online documentation for Spectrum::Python
commit 90a7174cb624e0704cc89a74b423b264c7448555
Author: Thibaut Paumard
Date: Wed Jun 17 04:13:03 2015 +0200
Implement thread-safety in the Python plugin
commit 5129d29bcf602053cd4ed8d14ad07dad5f7b8bb5
Author: Thibaut Paumard
Date: Wed Jun 17 03:38:28 2015 +0200
Use a class instead of a function in Spectrum::Python
commit afdea0e15f660c3e007511eeca25052fdfe7cd7d
Author: Thibaut Paumard
Date: Wed Jun 17 02:06:14 2015 +0200
Initial work on Python plug-in
Already allows to write spectra in Python.
commit 265339a2c67dfc90bbd2c167f0f9bcce944cb17f
Author: Thibaut Paumard
Date: Tue Jun 16 14:56:18 2015 +0200
Split INSTALL into specific INSTALL.Gyoto and generic INSTALL
commit 597b22bc66564cd6c118d305290cbb2744857db5
Author: Thibaut Paumard
Date: Tue Jun 16 13:01:49 2015 +0200
Fix GYOTO_PROPERTY_LONG macro and includes in Utils.C
commit f0282ed61db0442d1c16c33b40b2c7b3fccce525
Author: Thibaut Paumard
Date: Tue Jun 16 12:48:38 2015 +0200
Simplify setting arbitrary parameters from the command line
Object::setParameter(name, content, unit) is made recursive: if name
contains "::" (e.g. Astrobj::Spectrum::Temperature), the component
before the first occurence of "::" (here, "Astrobj") is interpreted as
a path. A property by that name in the curent object is sought. If it
is found, setParameter is called on this child object with the
remainder of the string (here "Spectrum::Temperature") and the other
parameters unchanged (content and unit).
On the command-line, replace the bunch of --TYPE-parameter options
with a single --parameter option, which applies to the root (Scenery)
level and uses this facility to access members in the Astrobj, Screen
etc.
commit b8766a3a4549e409b42663db881638b66a833223
Author: Thibaut Paumard
Date: Mon Jun 15 22:20:04 2015 +0200
Do not interpret empty Mask as current directory in Screen
commit 00d3c9a48696f9b63f1dc4550c6d4f4461ad73b0
Author: Thibaut Paumard
Date: Mon Jun 15 22:20:04 2015 +0200
Do not interpret empty Mask as current directory in Screen
commit 2675d0e1018f976b2c2d2775bfc1a4c5e5017872
Author: Thibaut Paumard
Date: Mon Jun 15 22:14:24 2015 +0200
Differentiate as much as possible size_t from unsigned int
commit 33c4e6440fa8bdcf580ea95e70da5c9672789a52
Author: Thibaut Paumard
Date: Mon Jun 15 20:47:58 2015 +0200
Fix Screen::Subcontractor to parse Mask as a filename
commit 98c978d52dc0c9f80a42b9fa5470f6001c2f7c37
Author: Thibaut Paumard
Date: Mon Jun 15 20:47:58 2015 +0200
Fix Screen::Subcontractor to parse Mask as a filename
commit ce80b25cb2e4683fc9baf6dd6ac9ecb1539f2b1e
Author: Thibaut Paumard
Date: Mon Jun 15 20:11:42 2015 +0200
Access object help from command line
Add Gyoto::help() in Utils.C, expose it from gyoto.C. Document it in manpage. Also document in Yorick.
commit 91e3e249a8dd888921f936f85d201f05548f8644
Author: Thibaut Paumard
Date: Mon Jun 15 16:36:41 2015 +0200
Accept doc strings for all types of Properties
And add help method to all objects in Yorick.
commit 7d11c2ed576b3920ae3a86c445ea9dddf91d3376
Author: Thibaut Paumard
Date: Mon Jun 15 09:25:12 2015 +0200
Support autodocumentation of properties
Add describeProperty and help methods to Object.
commit eca21878cacf3dbcb18eedba0ccf22c3d47579a3
Author: Thibaut Paumard
Date: Fri Jun 12 17:03:06 2015 +0200
Issue a more usefull progress status (j = n/N)
Ratonale: it was weird to have the progress indicate
e.g. "128/3... 129/3... 1000/3". Now the count always progess by
increment of one over the actual number of columns that will be
integrated.
Add Screen::Coord1dSet::index() method, display this index instead of
raw "j" value.
commit 33322681880e01d04449b1e3e0cb8d2070ab310c
Author: Thibaut Paumard
Date: Fri Jun 12 13:51:20 2015 +0200
Remove KerrKS specific integrator
It has never been proven to work, contrary to the generic integrator
which behaves very well with either the Legacy or Boost integrators.
Remove:
* SpecificIntegrator/GenericIntegrator property;
* generic_integrator_ data member;
* genericIntegrator accessors;
* nullifyCoord, MakeCst, myrk4, mrk4_adaptive, diff,
setParticleProperties methods.
Add:
* setParameter method, to filter out
SpecificIntegrator/GenericIntegrator and warn when they are used.
commit a2288b60a34c86cd97f5d09ddc0837fc45c48d70
Author: Thibaut Paumard
Date: Thu Jun 11 16:25:49 2015 +0200
fenv.h functions in the Yorick plug-in
* Add more functions to control the floating-point environment from
Yorick.
* Note in README.SIGFPE to loading a plug-in can change the
floating-point environment.
* More debugging in Register::init().
commit 02e025b33efdc3c908feb3eedeb40647c2989448
Author: Thibaut Paumard
Date: Fri Jun 12 10:56:39 2015 +0200
Fix copyright years for KerrKS
commit 32722870c929dc888d1b796fb7f37ee3a1e9774d
Author: Thibaut Paumard
Date: Fri Jun 12 10:56:39 2015 +0200
Fix copyright years for KerrKS
commit 0f60e1b78582c05307dc6a394425b4a6e571c7df
Author: Thibaut Paumard
Date: Fri Jun 12 10:47:27 2015 +0200
KerrKS is mature
Stop inheriting from WIP. This is an ABI-breaking change, only for
master for now.
commit 33dc967ffbaf0bb5c33e96731ab8ce924f976f77
Author: Thibaut Paumard
Date: Fri Jun 12 10:33:36 2015 +0200
KerrKS is not WIP anymore
Modify the WIP (work in progress) class constructor to not issue a
warning if passed the empty string instead of a class name. Use this
facility to stop issuing the warning for KerrKS, which has grown in
maturity. This is an ABI-safe change. Next step is to stop inheriting
from WIP, but this will break the ABI and is not for the stable
branch.
The warning when using the specific integrator is now severe. This is
the part that really is still buggy in KerrKS.
commit 238b83d61030c2f2509039cb59513e89b8c05925
Author: Thibaut Paumard
Date: Fri Jun 12 10:33:36 2015 +0200
KerrKS is not WIP anymore
Modify the WIP (work in progress) class constructor to not issue a
warning if passed the empty string instead of a class name. Use this
facility to stop issuing the warning for KerrKS, which has grown in
maturity. This is an ABI-safe change. Next step is to stop inheriting
from WIP, but this will break the ABI and is not for the stable
branch.
The warning when using the specific integrator is now severe. This is
the part that really is still buggy in KerrKS.
commit c5c30a9edc6234c25f3472bb6980c37ca42aaed9
Author: Thibaut Paumard
Date: Thu Jun 11 16:25:49 2015 +0200
fenv.h functions in the Yorick plug-in
* Add more functions to control the floating-point environment from
Yorick.
* Note in README.SIGFPE to loading a plug-in can change the
floating-point environment.
* More debugging in Register::init().
commit 0e2ef8c237ff80574e9631326f2f80f42f7709ca
Author: Frederic
Date: Wed Jun 10 16:08:57 2015 +0200
PolishDoughnut: Adding central_temperature_ parameter
commit 17cc24485252ccef252fd6eefa9b6e5fce89d6d1
Author: Thibaut Paumard
Date: Wed Jun 10 13:50:35 2015 +0200
Fix build failure when not using fenv.h
commit 6cdf9242e25263e9232d7bba8680980372e17597
Author: Thibaut Paumard
Date: Wed Jun 10 12:07:18 2015 +0200
Fix warnings (incl. undefined behavior) and some optimization
* pass 'make CPPFLAGS="-Wall -Werror -DGYOTO_NO_DEPRECATED \
-Wno-error=literal-suffix -Wno-error=unknown-pragmas"'
* some code optimization in NumericalMetricLorene
commit 3fd7a08f6d2a22f996317ef14399ed4b989216fc
Author: Thibaut Paumard
Date: Tue Jun 9 17:32:06 2015 +0200
Update documentation and test suite
+ update manpage and gyoto -h
+ update test suite to use short options and mpirun
+ update copyright statement in binary
commit c62b5619bc7693123ccb87c2032ec7855174bd87
Author: Thibaut Paumard
Date: Tue Jun 9 12:15:54 2015 +0200
Add and/or document parameters to gyoto utility
--ispec, --jspec, --astrobj|metric|scenery|screen|spectrometer-parameter, --unit, --xmlwrite
commit e5dae98b13fae0b1b71ecdfbd792a5fc6713759d
Author: Thibaut Paumard
Date: Tue Jun 9 12:15:54 2015 +0200
Add and/or document parameters to gyoto utility
--ispec, --jspec, --astrobj|metric|scenery|screen|spectrometer-parameter, --unit, --xmlwrite
commit 08ca7552f739f28a4460b710661b34ca20763eb6
Author: Thibaut Paumard
Date: Tue Jun 9 01:57:12 2015 +0200
Rewrite gyoto.C option parsing using optionparser.h.
commit 913c7ddc07097712fbb15e7e78cf2dbcfce15518
Author: Thibaut Paumard
Date: Mon Jun 8 16:34:28 2015 +0200
Document --no-sigfpe in manpage; update synopsys in usage() in bin/gyoto.C
commit e188a2624a2444d796d01214686c10a70c0286a6
Author: Thibaut Paumard
Date: Tue Jun 9 01:57:12 2015 +0200
Rewrite gyoto.C option parsing using optionparser.h.
commit 5097acfeeec1282cf07de1211c0dcfddc988915c
Author: Thibaut Paumard
Date: Mon Jun 8 16:34:28 2015 +0200
Document --no-sigfpe in manpage; update synopsys in usage() in bin/gyoto.C
commit 62b4bb62aa0b94b92d31841839d6c6a0cc736605
Author: Frederic
Date: Mon Jun 8 16:26:32 2015 +0200
NML.C: changed computation of Keplerian angular momentum.
Doughnut: adding definition of rcusp and rintorus for all cases.
commit efc0f53daf24b88c8c76c1690aaefeb7ed6c2dac
Author: Thibaut Paumard
Date: Mon Jun 8 14:57:50 2015 +0200
Fix spurious SIGFPE
+ initialize all members of Value instances do avoid bad (NAN) random values;
+ hold FP exceptions when makeing boost stepper as make_controlled can raise.
commit 7ce95331587e2951d202fa2cb1baf6ae1a3d735a
Author: Thibaut Paumard
Date: Mon Jun 8 14:57:50 2015 +0200
Fix spurious SIGFPE
+ initialize all members of Value instances do avoid bad (NAN) random values;
+ hold FP exceptions when makeing boost stepper as make_controlled can raise.
commit d069bb5d5ab279608a5a646568c7200fe4330937
Author: Thibaut Paumard
Date: Fri Jun 5 16:04:58 2015 +0200
Fix GYOTO_PROPERTY_SIZE_T to work on 32-bit architectures.
On 32 bit system, size_t and unsigned double are identical but distinct types.
commit 4015547ad848caa33dfbf60fa1781e485a811902
Author: Thibaut Paumard
Date: Fri Jun 5 16:04:58 2015 +0200
Fix GYOTO_PROPERTY_SIZE_T to work on 32-bit architectures.
On 32 bit system, size_t and unsigned double are identical but distinct types.
commit a5a1ae7165e010e7cec820f974f739706d977ecc
Author: Thibaut Paumard
Date: Tue Jun 2 15:03:56 2015 +0200
fenv.h support: by default, enable SIGFPE exceptions. Provide mechanisms to disable it. See README.SIGFPE.
commit af37c64da82edf5c43c356728372eed9b14e16b2
Author: Thibaut Paumard
Date: Tue Jun 2 15:03:56 2015 +0200
fenv.h support: by default, enable SIGFPE exceptions. Provide mechanisms to disable it. See README.SIGFPE.
commit cad7c2040d5d80d9fd98d1011c8fb614c6a8881f
Author: Thibaut Paumard
Date: Mon Jun 1 12:06:21 2015 +0200
Discourage compiling with clang in INSTALL.
commit cbcdffb2048ce9a2f78718c7c9b2d69c1ef096df
Author: Thibaut Paumard
Date: Fri May 29 13:01:43 2015 +0200
Small improvements triggered by clang warnings
commit 3cb08ede61007eeacaa057dca76589dadc7dc8da
Author: Thibaut Paumard
Date: Wed May 27 16:19:00 2015 +0200
Remove unconditional throwError from GyotoScreen.h
commit faae244af48a65782123b0034389aca1ec79f439
Author: Thibaut Paumard
Date: Wed May 27 11:34:02 2015 +0200
Releasing 1.0.1 (1984 release)
+ add Odele to AUTHORS
+ update NEWS, ChangeLog and configure*.
commit 2292f1d74eaa9968ea9ec64bd00fdc150d8fe8b1
Author: Thibaut Paumard
Date: Wed May 27 11:17:14 2015 +0200
Simplify python detection and add --without-python to make it possible
to build Gyoto when python is installed but with wrong version.
commit 041c5fc40ee736afb183d693d93bca3b5fcdc1d5
Author: Thibaut Paumard
Date: Wed May 27 10:06:52 2015 +0200
python/doxy2swig.py: add 3rd clause of BSD license per request of original author
commit 21dba0161760650512abd8507cfcfa7be27b5e22
Author: Thibaut Paumard
Date: Wed May 27 08:45:11 2015 +0200
Fix (bin|lib)/Makefile.am to use BOOST_*_LIBS instead of hardcoding the library name. This allows compiling with MPI support under at least macports.
commit 27fc03fe981bbcd3e6f919120a6b43bc6fc62a62
Author: Thibaut Paumard
Date: Mon May 25 17:06:24 2015 +0200
Releasing 1.0.0 (Youhou!)
+ add a note about --enable-release in README
+ add README.Developers to remember how to make a release...
+ update NEWS, ChangeLog and configure.ac.
commit aa035f96465a0a45dd910de47281e7652dffb44e
Author: Thibaut Paumard
Date: Mon May 25 15:46:10 2015 +0200
* Update python/numpy.i
* Put BSD license in python/doxyfile.py
* Update copyright notice in every file edited in 2015
commit ca1979527bb018d77ad40cc9749b27e8d9bd4148
Author: Thibaut Paumard
Date: Sun May 24 10:23:25 2015 +0200
Clean *CFLAGS and *LDFLAGS and link always with CFITSIO which is now needed by Screen
commit 603f961fba9a796cf57bd7427cdd7b504db93e3e
Author: Thibaut Paumard
Date: Sat May 23 13:56:25 2015 +0200
Don't .gitignore all gyoto files
commit 1f40e4053f01633839dbdb6b74b3e806663fbded
Author: Thibaut Paumard
Date: Sat May 23 13:50:16 2015 +0200
fix spelling errors
commit 752026d3bc4d4bd5c4fdf3e74c2e6c6d8170d887
Author: Thibaut Paumard
Date: Sat May 23 09:31:29 2015 +0200
* clean leftover files from doxygen
* use pkglibdir instead of asuming it is prefix/lib/yorick
commit 11c4faa047b9eb172281c62ff366e9bf741d0831
Author: Thibaut Paumard
Date: Fri May 22 12:07:06 2015 +0200
Fix Disk3D::repeatPhi() to avoid SIGFPE when nphi_ is 0
commit d50df30e31cf0c89eb51744564f145859f6b280e
Author: Thibaut Paumard
Date: Fri May 22 11:50:34 2015 +0200
fixup polishdoughnut warnings
commit 3339bf7115e2b9769fa05bd18fd0be6b702c7d8e
Author: Thibaut Paumard
Date: Fri May 22 11:42:48 2015 +0200
Fix PolishDoughnut to export either Lambda or AngMomRinner to XML, but not both.
commit 56a4548398a87c01e34893ed38426a8b13ff7bf9
Author: Frederic
Date: Thu May 7 15:06:56 2015 +0200
PolishDOughnut: few couts forgotten
commit e8ddcf706e7f80481bcf017ca356940ab86dd5b2
Author: Frederic
Date: Thu May 7 15:05:09 2015 +0200
NML: adding the rico() Property read by Polish Doughnut
commit 4c47e67456caafb80fff8489f639c563d352cbfa
Author: Frederic
Date: Thu May 7 11:53:49 2015 +0200
PolishDoughnut: adding a test such that lamnda and angmomrinner can't be defined together
commit 9127af4e64a6f9296c437621a14a130d3cfd29cc
Author: Frederic
Date: Thu May 7 10:42:26 2015 +0200
NML: hopefully correct expression for 4D christoffels from 3+1 quantities
commit 3d2021646a177981e737c8b1777ae52633f30423
Author: Frederic
Date: Thu May 7 10:35:00 2015 +0200
PolishDoughnut: adding the possibility to define a doughnut by specifying the angular momentum and inner radius, so no longer limited to Roche-lobe-filling tori.
commit 8efb25243c99776ed1cd49777385d20b69cf69e9
Author: Thibaut Paumard
Date: Wed Apr 8 08:00:08 2015 +0200
yorick: fix bug bug in dimension calculation of impactcoords when addressing sceneray with angles
commit 70b36cea4a91b1bed1f582f28312fb096d7c6112
Author: Thibaut Paumard
Date: Fri Mar 27 16:53:24 2015 +0100
fixup
commit c764b58ed8e4b55c4172d03080e8a3fbac43b647
Author: Thibaut Paumard
Date: Fri Mar 27 16:49:37 2015 +0100
Be more specific about which part of Boost is needed in each file (we use boost::array, Boost.multiprecision, Boost.odeint, Boost.mpi)
commit 17aca8b349c38a4e5ef2355422feadd781414c63
Author: Thibaut Paumard
Date: Fri Mar 27 12:45:42 2015 +0100
Improve Boost.mpi detection. Slightly tuned to ObsPM cluster...
commit b7511de0edd86a6c6596465673a757d1df6e253d
Author: Thibaut Paumard
Date: Thu Mar 26 18:16:10 2015 +0100
Fix Boost.mpi detection
commit 26c95ca9f32dfb5c4627203e470c571a17000fa8
Author: Thibaut Paumard
Date: Thu Mar 26 12:39:30 2015 +0100
Change impactcoords to always return the first (backwards) encounter with the object
commit cba8e4e56314432dee6e0ea1a6fbc1a4fccb9dd4
Author: Thibaut Paumard
Date: Wed Mar 18 13:17:12 2015 +0100
Scenery: add updatePhoton and clonePhoton(i, j) APIs to get Photon with all tuning parameters from the Scenery
Photon: fix findMin to work also when time is too large
commit a3b908914d273f7effb527e0f71c5d0a83fda0e3
Author: Thibaut Paumard
Date: Wed Feb 18 10:28:58 2015 +0100
Fix sunradius unit, which was set to 1 meter
commit 6d80547e5b7f145afddfae05bd3df3bc5b238735
Author: Thibaut Paumard
Date: Tue Feb 17 16:40:10 2015 +0100
* Expose MinimumTime as a property in Worldline;
* yorick:
+ support setting Properties in the generic way for Photon;
+ support setting Properties of object kind (Astrobj, Metric)... to 0.
* gyotoy: make gyotoy_warning an alias to error (it was undefined).
commit b79baab9367f5951d3e433bc4304cc095a3a940a
Author: Frederic
Date: Thu Jan 29 11:51:11 2015 +0100
NML.C: adding boson star circular velocity
commit 3e45810d24fc4b3f9212d9e34b51c0bc500286b2
Author: Frederic
Date: Wed Jan 21 16:44:18 2015 +0100
Adding the Disk3D to yorick test suit
commit 650fe87d89e4a14a745c413683b84fe31e403d9f
Author: Frederic
Date: Wed Jan 21 16:24:27 2015 +0100
DynaDisk3D: adding File Property
commit be07f7f26c39a452120103924f5a17f976c324c5
Author: Frederic
Date: Mon Jan 19 18:12:47 2015 +0100
NumericalMetricLorene: adding 4D Christoffels
commit 4783d49d394efad393ee3ffe75c2dea7e70c8384
Author: Frederic
Date: Mon Jan 19 18:11:13 2015 +0100
ThinDisk: adding a trivial constant emission for simple visualization
commit 5ea26ab877df2421529b5a571c4eb06fa1a99d48
Author: Thibaut Paumard
Date: Thu Jan 15 11:47:20 2015 +0100
configure: look for swig3.0 as alternative for SWIG
commit b3d3a31520cd9dc00d7638384ce15377c261b635
Author: Thibaut Paumard
Date: Wed Jan 14 19:31:14 2015 +0100
Puthon: small adjustments (incl. ignore Photon::Refined) to compile with Swig 3.0
commit ca3d163e0780d3ad171d51ed37d07fa770fbf230
Author: Thibaut Paumard
Date: Wed Jan 14 16:05:13 2015 +0100
Python: make Swig interface file language agnostic (by including NumPy lines only conditionaly)
commit 42c4e894b6e7ba2d0c5f0f5a97651edab62eae69
Author: Thibaut Paumard
Date: Wed Jan 14 15:52:58 2015 +0100
+ Gyoto::Value: make operator bool deal with long_t and unsigned_long_t
+ Python: make %typemap(in) Gyoto::Value target-language-agnostic
commit da505ec0da17ad3dc8507dca3261819ed1d6c74d
Author: Thibaut Paumard
Date: Wed Jan 14 12:52:05 2015 +0100
+ Add Gyoto::Object::get/set(std::string const &property_name ...)
+ Gyoto::Value::operator [unsigned] long() work also if the other type of long was set
+ Python:
* bugfix: avoid segfault when outputting a NULL SmartPointer;
* new typemaps around Gyoto::Value
commit 8f8a3aa5a61663848e19b8067b574a222fba52f0
Author: Thibaut Paumard
Date: Tue Jan 13 13:16:44 2015 +0100
Python: make swig file a little less dependent on python
commit 9832ccbf6af0d53a050ff0b9cac8cdcce458c2cd
Author: Thibaut Paumard
Date: Mon Jan 12 15:05:57 2015 +0100
Python: support building without boost
commit e8642a125992918c08ed1569eb6fc83a16b65bc2
Author: Thibaut Paumard
Date: Mon Jan 12 13:44:16 2015 +0100
Python: support out-of-tree builds
commit 1cf513c3acb4a2df3b83644f08f5e3079295a186
Author: Thibaut Paumard
Date: Mon Jan 12 10:59:15 2015 +0100
Python: patch gyoto_doc.i doc accomodate for renamed nested classed in Screen
commit b75734f061eed2241b952e0708e0715b3b33ff6a
Author: Thibaut Paumard
Date: Sat Jan 10 22:42:26 2015 +0100
Python: expose GYOTO_ARRAY::operator[]()
commit ad176cbeb4fea6d6079c879c6eebbaa58264955c
Author: Thibaut Paumard
Date: Sat Jan 10 15:20:00 2015 +0100
Python: support NumPy arrays *in addition* to low level C arrays in Coord1dSets Indices and Angles
commit edeec3e193af94c5b948ce93d878022d7d01992b
Author: Thibaut Paumard
Date: Fri Jan 9 15:19:35 2015 +0100
Provide casting from NumPy ndarray to gyoto.array_double. All Gyoto methods take the latter as argument.
commit 608982f15f0bbb2aecb91be51259c143ed6c6778
Author: Thibaut Paumard
Date: Fri Jan 9 11:17:02 2015 +0100
Add typemaps for Worldline::IntegState, Astrobj::Properties and SmartPointee
commit 1f85f55834b543671e4f8bb6ef41d26385951ac5
Author: Thibaut Paumard
Date: Fri Jan 9 10:44:02 2015 +0100
Python: correctly support Gyoto::Quantity_t as a integer type
commit aa91388eef6c4f7b0d6d77bb9f85232fec356ba8
Author: Thibaut Paumard
Date: Thu Jan 8 14:43:48 2015 +0100
Add python/example-mpi.py showing how to use MPI
commit 66a26bb1cf3c26f836ca98b940e7cf2bedb21dfe
Author: Thibaut Paumard
Date: Thu Jan 8 13:53:38 2015 +0100
Document Python extension in the user guide
commit 30f655752a852dfeb6a92c4f4d3a7c98635bc535
Author: Thibaut Paumard
Date: Wed Jan 7 19:58:07 2015 +0100
Python: Expose Gyoto::Property (ignore constructors)
commit 3dcf970c10046d2302b90af217f8f3d0ffd4e939
Author: Thibaut Paumard
Date: Wed Jan 7 17:40:19 2015 +0100
Python:
+ don't ignore any class (only constructors for abstract classes and some other methods)
+ work around a swig bug that makes "help()" fail
+ expose the Unit and Converters system
commit 1c495fdf30f3cd973b86d8bf58c8c36feb520a88
Author: Thibaut Paumard
Date: Wed Jan 7 14:47:54 2015 +0100
small tweaks in Python build-system
commit e8ba9a5ebfdd7b2987213d5c468dd8e024135d2d
Author: Thibaut Paumard
Date: Wed Jan 7 14:01:05 2015 +0100
Python: expose normal pointers (with reference counting) rather than SmartPointers.
commit afcfaef4bd1ac997186522cacbda5766d0981e7c
Author: Thibaut Paumard
Date: Mon Jan 5 18:07:00 2015 +0100
Check for Swig in configure, fix glitches so python extension compiles under MacOS (w/ macports)
commit c84d32b4eab3d3c1a721218cd5a8329cfcd3400a
Author: Thibaut Paumard
Date: Mon Jan 5 15:51:45 2015 +0100
Minor fixes in Python docstring generation
commit 46e73509da11e0f0ac1b52970689773ce186b4ed
Author: Thibaut Paumard
Date: Mon Jan 5 15:26:56 2015 +0100
Use doxygen to provide docstrings in the python bindings (based on doxy2swig)
commit 78b9c99ea2c79f54a3bd045c2d9c77845ba7a959
Author: Thibaut Paumard