healpy-1.8.1/0000755000175000017500000000000012351601662013253 5ustar zoncazonca00000000000000healpy-1.8.1/INSTALL.rst0000644000175000017500000001065112351422052015110 0ustar zoncazonca00000000000000Installation procedure for Healpy ================================= Requirements ------------ Healpy depends on the HEALPix C++ and cfitsio C libraries. Source code for both is include with Healpy and is built automatically, so you do not need to install them yourself. Quick installation with Pip --------------------------- The quickest way to install Healpy is with `pip `_ (>= 1.4.2), which automatically fetches the latest version of Healpy and any missing dependencies:: pip install --user healpy If you have installed with ``pip``, you can keep your installation up to date by upgrading from time to time:: pip install --user --upgrade healpy Even quicker installation on Mac OS with MacPorts ------------------------------------------------- If you are using a Mac and have the `MacPorts `_ package manager, it's even easer to install Healpy with:: sudo port install py27-healpy Binary `apt-get` style packages are also available in the development versions of `Debian (sid) `_ and `Ubuntu (utopic) `_. Almost-as-quick installation from official source release --------------------------------------------------------- Healpy is also available in the `Python Package Index (PyPI) `_. You can download it with:: curl -O https://pypi.python.org/packages/source/h/healpy/healpy-1.7.4.tar.gz and build it with:: tar -xzf healpy-1.7.4.tar.gz pushd healpy-1.7.4 python setup.py install --user popd If everything goes fine, you can test it:: python >>> import matplotlib.pyplot as plt >>> import numpy as np >>> import healpy as hp >>> hp.mollview(np.arange(12)) >>> plt.show() or run the test suite with nose:: cd healpy-1.7.4 && python setup.py test Building against external Healpix and cfitsio --------------------------------------------- Healpy uses pkg-config to detect the presence of the Healpix and cfitsio libraries. pkg-config is available on most systems. If you do not have pkg-config installed, then Healpy will download and use (but not install) a Python clone called pykg-config. If you want to provide your own external builds of Healpix and cfitsio, then download the following packages: * `pkg-config `_ * `HEALPix `_ autotools-style C++ package * `cfitsio `_ If you are going to install the packages in a nonstandard location (say, ``--prefix=/path/to/local``), then you should set the environment variable ``PKG_CONFIG_PATH=/path/to/local/lib/pkgconfig`` when building. No other environment variable settings are necessary, and you do not need to set ``PKG_CONFIG_PATH`` to use Healpy after you have built it. Then, unpack each of the above packages and build them with the usual ``configure; make; make install`` recipe. Known issues ------------ * Incompatibility with ``cfitisio`` from ``HEASOFT``: due to a conflict of header file names it is currently not possible to use the cfitsio library provided with the HEASOFT package for compilation of Healpix C++. HEASOFT's include directory contains a file called "rotmatrix.h" which clashes with Healpix's own rotmatrix.h. * Compilation problems in the C++ package: some gcc versions (we have reports for 4.4.5 and 4.4.6) crash with an internal compiler error during compilation of libsharp. Unfortunately we have not found a workaround for this compiler problem. To our knowledge, it has been fixed in gcc 4.4.7 and in the 4.5.x and newer versions. Development install ------------------- Developers building from a snapshot of the github repository need: * ``autoconf`` and ``libtool`` (in Debian or Ubuntu: ``sudo apt-get install autoconf automake libtool pkg-config``) * `cython` > 0.16 * run ``git submodule init`` and ``git submodule update`` to get the bundled HEALPix sources the best way to install healpy if you plan to develop is to build the C++ extensions in place with:: python setup.py build_ext --inplace then add the ``healpy/healpy`` folder to your ``PYTHONPATH``. Clean ----- When you run "python setup.py", temporary build products are placed in the "build" directory. If you want to clean out and remove the ``build`` directory, then run:: python setup.py clean --all healpy-1.8.1/healpy.egg-info/0000755000175000017500000000000012351601662016227 5ustar zoncazonca00000000000000healpy-1.8.1/healpy.egg-info/requires.txt0000644000175000017500000000001212351601661020617 0ustar zoncazonca00000000000000pyfits sixhealpy-1.8.1/healpy.egg-info/top_level.txt0000644000175000017500000000000712351601661020755 0ustar zoncazonca00000000000000healpy healpy-1.8.1/healpy.egg-info/dependency_links.txt0000644000175000017500000000000112351601661022274 0ustar zoncazonca00000000000000 healpy-1.8.1/healpy.egg-info/PKG-INFO0000644000175000017500000000165312351601661017330 0ustar zoncazonca00000000000000Metadata-Version: 1.1 Name: healpy Version: 1.8.1 Summary: Healpix tools package for Python Home-page: http://github.com/healpy Author: C. Rosset, A. Zonca Author-email: cyrille.rosset@apc.univ-paris-diderot.fr License: GPLv2 Description: UNKNOWN Platform: UNKNOWN Classifier: Development Status :: 5 - Production/Stable Classifier: Environment :: Console Classifier: Intended Audience :: Science/Research Classifier: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) Classifier: Operating System :: POSIX Classifier: Programming Language :: C++ Classifier: Programming Language :: Python :: 2.6 Classifier: Programming Language :: Python :: 2.7 Classifier: Programming Language :: Python :: 3.2 Classifier: Programming Language :: Python :: 3.3 Classifier: Programming Language :: Python :: 3.4 Classifier: Topic :: Scientific/Engineering :: Astronomy Classifier: Topic :: Scientific/Engineering :: Visualization healpy-1.8.1/healpy.egg-info/SOURCES.txt0000644000175000017500000003616612351601662020127 0ustar zoncazonca00000000000000CHANGELOG.rst CITATION COPYING INSTALL.rst MANIFEST.in README.rst ez_setup.py pykg_config.py setup.py cfitsio/CMakeLists.txt cfitsio/FindPthreads.cmake cfitsio/License.txt cfitsio/Makefile.in cfitsio/README cfitsio/README.MacOS cfitsio/README.win cfitsio/README_OLD.win cfitsio/buffers.c cfitsio/cfileio.c cfitsio/cfitsio.pc.in cfitsio/cfitsio_mac.sit.hqx cfitsio/cfortran.h cfitsio/checksum.c cfitsio/config.guess cfitsio/config.sub cfitsio/configure cfitsio/configure.in cfitsio/cookbook.c cfitsio/cookbook.f cfitsio/drvrfile.c cfitsio/drvrgsiftp.c cfitsio/drvrgsiftp.h cfitsio/drvrmem.c cfitsio/drvrnet.c cfitsio/drvrsmem.c cfitsio/drvrsmem.h cfitsio/editcol.c cfitsio/edithdu.c cfitsio/eval.l cfitsio/eval.y cfitsio/eval_defs.h cfitsio/eval_f.c cfitsio/eval_l.c cfitsio/eval_tab.h cfitsio/eval_y.c cfitsio/f77.inc cfitsio/f77_wrap.h cfitsio/f77_wrap1.c cfitsio/f77_wrap2.c cfitsio/f77_wrap3.c cfitsio/f77_wrap4.c cfitsio/fits_hcompress.c cfitsio/fits_hdecompress.c cfitsio/fitscopy.c cfitsio/fitscore.c cfitsio/fitsio.h cfitsio/fitsio2.h cfitsio/fpack.c cfitsio/fpack.h cfitsio/fpackutil.c cfitsio/funpack.c cfitsio/getcol.c cfitsio/getcolb.c cfitsio/getcold.c cfitsio/getcole.c cfitsio/getcoli.c cfitsio/getcolj.c cfitsio/getcolk.c cfitsio/getcoll.c cfitsio/getcols.c cfitsio/getcolsb.c cfitsio/getcolui.c cfitsio/getcoluj.c cfitsio/getcoluk.c cfitsio/getkey.c cfitsio/group.c cfitsio/group.h cfitsio/grparser.c cfitsio/grparser.h cfitsio/histo.c cfitsio/imcompress.c cfitsio/imcopy.c cfitsio/install-sh cfitsio/iraffits.c cfitsio/iter_a.c cfitsio/iter_a.f cfitsio/iter_a.fit cfitsio/iter_b.c cfitsio/iter_b.f cfitsio/iter_b.fit cfitsio/iter_c.c cfitsio/iter_c.f cfitsio/iter_c.fit cfitsio/iter_image.c cfitsio/iter_var.c cfitsio/longnam.h cfitsio/makefile.bc cfitsio/makefile.vcc cfitsio/makepc.bat cfitsio/modkey.c cfitsio/pliocomp.c cfitsio/putcol.c cfitsio/putcolb.c cfitsio/putcold.c cfitsio/putcole.c cfitsio/putcoli.c cfitsio/putcolj.c cfitsio/putcolk.c cfitsio/putcoll.c cfitsio/putcols.c cfitsio/putcolsb.c cfitsio/putcolu.c cfitsio/putcolui.c cfitsio/putcoluj.c cfitsio/putcoluk.c cfitsio/putkey.c cfitsio/quantize.c cfitsio/region.c cfitsio/region.h cfitsio/ricecomp.c cfitsio/sample.tpl cfitsio/scalnull.c cfitsio/smem.c cfitsio/speed.c cfitsio/swapproc.c cfitsio/testf77.f cfitsio/testf77.out cfitsio/testf77.std cfitsio/testprog.c cfitsio/testprog.out cfitsio/testprog.std cfitsio/testprog.tpt cfitsio/vmsieee.c cfitsio/wcssub.c cfitsio/wcsutil.c cfitsio/winDumpExts.mak cfitsio/windumpexts.c cfitsio/zlib/adler32.c cfitsio/zlib/crc32.c cfitsio/zlib/crc32.h cfitsio/zlib/deflate.c cfitsio/zlib/deflate.h cfitsio/zlib/infback.c cfitsio/zlib/inffast.c cfitsio/zlib/inffast.h cfitsio/zlib/inffixed.h cfitsio/zlib/inflate.c cfitsio/zlib/inflate.h cfitsio/zlib/inftrees.c cfitsio/zlib/inftrees.h cfitsio/zlib/trees.c cfitsio/zlib/trees.h cfitsio/zlib/uncompr.c cfitsio/zlib/zcompress.c cfitsio/zlib/zconf.h cfitsio/zlib/zlib.h cfitsio/zlib/zuncompress.c cfitsio/zlib/zutil.c cfitsio/zlib/zutil.h healpixsubmodule/src/cxx/autotools/Makefile.am healpixsubmodule/src/cxx/autotools/Makefile.in healpixsubmodule/src/cxx/autotools/aclocal.m4 healpixsubmodule/src/cxx/autotools/ar-lib healpixsubmodule/src/cxx/autotools/compile healpixsubmodule/src/cxx/autotools/config.guess healpixsubmodule/src/cxx/autotools/config.sub healpixsubmodule/src/cxx/autotools/configure healpixsubmodule/src/cxx/autotools/configure.ac healpixsubmodule/src/cxx/autotools/depcomp healpixsubmodule/src/cxx/autotools/install-sh healpixsubmodule/src/cxx/autotools/ltmain.sh healpixsubmodule/src/cxx/autotools/make_release healpixsubmodule/src/cxx/autotools/missing healpixsubmodule/src/cxx/autotools/test-driver healpixsubmodule/src/cxx/autotools/Healpix_cxx/Healpix_cxx.dox healpixsubmodule/src/cxx/autotools/Healpix_cxx/alm.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/alm.h healpixsubmodule/src/cxx/autotools/Healpix_cxx/alm2map_cxx.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/alm2map_cxx.par.txt healpixsubmodule/src/cxx/autotools/Healpix_cxx/alm2map_cxx_module.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/alm_fitsio.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/alm_fitsio.h healpixsubmodule/src/cxx/autotools/Healpix_cxx/alm_healpix_tools.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/alm_healpix_tools.h healpixsubmodule/src/cxx/autotools/Healpix_cxx/alm_powspec_tools.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/alm_powspec_tools.h healpixsubmodule/src/cxx/autotools/Healpix_cxx/anafast_cxx.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/anafast_cxx.par.txt healpixsubmodule/src/cxx/autotools/Healpix_cxx/anafast_cxx_module.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/calc_powspec.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/calc_powspec_module.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/healpix_base.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/healpix_base.h healpixsubmodule/src/cxx/autotools/Healpix_cxx/healpix_data_io.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/healpix_data_io.h healpixsubmodule/src/cxx/autotools/Healpix_cxx/healpix_map.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/healpix_map.h healpixsubmodule/src/cxx/autotools/Healpix_cxx/healpix_map_fitsio.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/healpix_map_fitsio.h healpixsubmodule/src/cxx/autotools/Healpix_cxx/healpix_tables.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/healpix_tables.h healpixsubmodule/src/cxx/autotools/Healpix_cxx/hotspots_cxx.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/hotspots_cxx_module.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/hpxtest.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/map2tga.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/map2tga.par.txt healpixsubmodule/src/cxx/autotools/Healpix_cxx/map2tga_module.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/median_filter_cxx.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/median_filter_cxx_module.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/mult_alm.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/mult_alm.par.txt healpixsubmodule/src/cxx/autotools/Healpix_cxx/mult_alm_module.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/planck.make healpixsubmodule/src/cxx/autotools/Healpix_cxx/powspec.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/powspec.h healpixsubmodule/src/cxx/autotools/Healpix_cxx/powspec_fitsio.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/powspec_fitsio.h healpixsubmodule/src/cxx/autotools/Healpix_cxx/rotalm_cxx.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/smoothing_cxx.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/smoothing_cxx.par.txt healpixsubmodule/src/cxx/autotools/Healpix_cxx/smoothing_cxx_module.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/syn_alm_cxx.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/syn_alm_cxx.par.txt healpixsubmodule/src/cxx/autotools/Healpix_cxx/syn_alm_cxx_module.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/udgrade_cxx.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/udgrade_cxx_module.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/udgrade_harmonic_cxx.cc healpixsubmodule/src/cxx/autotools/Healpix_cxx/udgrade_harmonic_cxx_module.cc healpixsubmodule/src/cxx/autotools/c_utils/c_utils.c healpixsubmodule/src/cxx/autotools/c_utils/c_utils.h healpixsubmodule/src/cxx/autotools/c_utils/planck.make healpixsubmodule/src/cxx/autotools/c_utils/sse_utils.h healpixsubmodule/src/cxx/autotools/c_utils/walltime_c.c healpixsubmodule/src/cxx/autotools/c_utils/walltime_c.h healpixsubmodule/src/cxx/autotools/cxxsupport/alloc_utils.h healpixsubmodule/src/cxx/autotools/cxxsupport/announce.cc healpixsubmodule/src/cxx/autotools/cxxsupport/announce.h healpixsubmodule/src/cxx/autotools/cxxsupport/arr.h healpixsubmodule/src/cxx/autotools/cxxsupport/bstream.h healpixsubmodule/src/cxx/autotools/cxxsupport/cxxsupport.dox 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healpixsubmodule/src/cxx/autotools/cxxsupport/paramfile.h healpixsubmodule/src/cxx/autotools/cxxsupport/planck.make healpixsubmodule/src/cxx/autotools/cxxsupport/planck_rng.h healpixsubmodule/src/cxx/autotools/cxxsupport/pointing.cc healpixsubmodule/src/cxx/autotools/cxxsupport/pointing.h healpixsubmodule/src/cxx/autotools/cxxsupport/rangeset.h healpixsubmodule/src/cxx/autotools/cxxsupport/rotmatrix.cc healpixsubmodule/src/cxx/autotools/cxxsupport/rotmatrix.h healpixsubmodule/src/cxx/autotools/cxxsupport/safe_cast.h healpixsubmodule/src/cxx/autotools/cxxsupport/safe_ptr.h healpixsubmodule/src/cxx/autotools/cxxsupport/share_utils.h healpixsubmodule/src/cxx/autotools/cxxsupport/sse_utils_cxx.h healpixsubmodule/src/cxx/autotools/cxxsupport/string_utils.cc healpixsubmodule/src/cxx/autotools/cxxsupport/string_utils.h healpixsubmodule/src/cxx/autotools/cxxsupport/trafos.cc healpixsubmodule/src/cxx/autotools/cxxsupport/trafos.h healpixsubmodule/src/cxx/autotools/cxxsupport/vec3.h healpixsubmodule/src/cxx/autotools/cxxsupport/walltimer.cc healpixsubmodule/src/cxx/autotools/cxxsupport/walltimer.h healpixsubmodule/src/cxx/autotools/cxxsupport/wigner.cc healpixsubmodule/src/cxx/autotools/cxxsupport/wigner.h healpixsubmodule/src/cxx/autotools/cxxsupport/xcomplex.h healpixsubmodule/src/cxx/autotools/libfftpack/README healpixsubmodule/src/cxx/autotools/libfftpack/bluestein.c healpixsubmodule/src/cxx/autotools/libfftpack/bluestein.h healpixsubmodule/src/cxx/autotools/libfftpack/fftpack.c healpixsubmodule/src/cxx/autotools/libfftpack/fftpack.h healpixsubmodule/src/cxx/autotools/libfftpack/fftpack_inc.c healpixsubmodule/src/cxx/autotools/libfftpack/libfftpack.dox healpixsubmodule/src/cxx/autotools/libfftpack/ls_fft.c healpixsubmodule/src/cxx/autotools/libfftpack/ls_fft.h healpixsubmodule/src/cxx/autotools/libfftpack/planck.make healpixsubmodule/src/cxx/autotools/libsharp/libsharp.dox healpixsubmodule/src/cxx/autotools/libsharp/planck.make healpixsubmodule/src/cxx/autotools/libsharp/sharp.c healpixsubmodule/src/cxx/autotools/libsharp/sharp.h healpixsubmodule/src/cxx/autotools/libsharp/sharp_almhelpers.c healpixsubmodule/src/cxx/autotools/libsharp/sharp_almhelpers.h healpixsubmodule/src/cxx/autotools/libsharp/sharp_complex_hacks.h healpixsubmodule/src/cxx/autotools/libsharp/sharp_core.c healpixsubmodule/src/cxx/autotools/libsharp/sharp_core.h healpixsubmodule/src/cxx/autotools/libsharp/sharp_core_inc.c healpixsubmodule/src/cxx/autotools/libsharp/sharp_core_inc2.c healpixsubmodule/src/cxx/autotools/libsharp/sharp_core_inchelper.c healpixsubmodule/src/cxx/autotools/libsharp/sharp_cxx.h healpixsubmodule/src/cxx/autotools/libsharp/sharp_geomhelpers.c healpixsubmodule/src/cxx/autotools/libsharp/sharp_geomhelpers.h healpixsubmodule/src/cxx/autotools/libsharp/sharp_internal.h healpixsubmodule/src/cxx/autotools/libsharp/sharp_lowlevel.h healpixsubmodule/src/cxx/autotools/libsharp/sharp_vecsupport.h healpixsubmodule/src/cxx/autotools/libsharp/sharp_vecutil.h healpixsubmodule/src/cxx/autotools/libsharp/sharp_ylmgen_c.c healpixsubmodule/src/cxx/autotools/libsharp/sharp_ylmgen_c.h healpixsubmodule/src/cxx/autotools/m4/libtool.m4 healpixsubmodule/src/cxx/autotools/m4/ltoptions.m4 healpixsubmodule/src/cxx/autotools/m4/ltsugar.m4 healpixsubmodule/src/cxx/autotools/m4/ltversion.m4 healpixsubmodule/src/cxx/autotools/m4/lt~obsolete.m4 healpixsubmodule/src/cxx/autotools/m4/m4_ax_create_pkgconfig_info.m4 healpy/__init__.py healpy/cookbook.py healpy/fitsfunc.py healpy/newvisufunc.py healpy/pixelfunc.py healpy/projaxes.py healpy/projector.py healpy/rotator.py healpy/sphtfunc.py healpy/version.py healpy/visufunc.py healpy/zoomtool.py healpy.egg-info/PKG-INFO healpy.egg-info/SOURCES.txt healpy.egg-info/dependency_links.txt healpy.egg-info/requires.txt healpy.egg-info/top_level.txt healpy/data/pixel_window_n0002.fits healpy/data/pixel_window_n0004.fits healpy/data/pixel_window_n0008.fits healpy/data/pixel_window_n0016.fits healpy/data/pixel_window_n0032.fits healpy/data/pixel_window_n0064.fits healpy/data/pixel_window_n0128.fits healpy/data/pixel_window_n0256.fits healpy/data/pixel_window_n0512.fits healpy/data/pixel_window_n1024.fits healpy/data/pixel_window_n2048.fits healpy/data/pixel_window_n4096.fits healpy/data/pixel_window_n8192.fits healpy/data/totcls.dat healpy/data/weight_ring_n00002.fits healpy/data/weight_ring_n00004.fits healpy/data/weight_ring_n00008.fits healpy/data/weight_ring_n00016.fits healpy/data/weight_ring_n00032.fits healpy/data/weight_ring_n00064.fits healpy/data/weight_ring_n00128.fits healpy/data/weight_ring_n00256.fits healpy/data/weight_ring_n00512.fits healpy/data/weight_ring_n01024.fits healpy/data/weight_ring_n02048.fits healpy/data/weight_ring_n04096.fits healpy/data/weight_ring_n08192.fits healpy/src/_common.pxd healpy/src/_healpy_fitsio_lib.cc healpy/src/_healpy_pixel_lib.cc healpy/src/_healpy_sph_transform_lib.cc healpy/src/_healpy_utils.h healpy/src/_pixelfunc.cpp healpy/src/_pixelfunc.pyx healpy/src/_query_disc.cpp healpy/src/_query_disc.pyx healpy/src/_sphtools.cpp healpy/src/_sphtools.pyx healpy/test/__init__.py healpy/test/test_doctest_cython.py healpy/test/test_fitsfunc.py healpy/test/test_pixelfunc.py healpy/test/test_query_disc.py healpy/test/test_sphtfunc.py healpy/test/test_spinfunc.py healpy/test/test_visufunc.py healpy/test/data/anafast_3_11_config_test_anafast.par healpy/test/data/anafast_3_11_config_test_anafast_nomask.par healpy/test/data/anafast_3_11_config_test_anafast_xspectra.par healpy/test/data/cl_wmap_band_iqumap_r9_7yr_WVxspec_v4_udgraded32_II_lmax64_rmmono_3iter.fits healpy/test/data/cl_wmap_band_iqumap_r9_7yr_W_v4_udgraded32_II_lmax64_rmmono_3iter.fits healpy/test/data/cl_wmap_band_iqumap_r9_7yr_W_v4_udgraded32_II_lmax64_rmmono_3iter_nomask.fits healpy/test/data/cl_wmap_band_iqumap_r9_7yr_W_v4_udgraded32_IQU_lmax64_rmmono_3iter.fits healpy/test/data/gaussbeam_10arcmin_lmax512_pol.fits healpy/test/data/map_synfast_seed12345.fits healpy/test/data/smoothing_3_11_config_test_smoothing_masked.par healpy/test/data/smoothing_3_11_config_test_smoothing_notmasked.par healpy/test/data/synfast_3_11_config_test_synfast.par healpy/test/data/wmap_band_iqumap_r9_7yr_V_v4_udgraded32.fits healpy/test/data/wmap_band_iqumap_r9_7yr_V_v4_udgraded32_masked.fits healpy/test/data/wmap_band_iqumap_r9_7yr_W_v4_udgraded32.fits healpy/test/data/wmap_band_iqumap_r9_7yr_W_v4_udgraded32_masked.fits healpy/test/data/wmap_band_iqumap_r9_7yr_W_v4_udgraded32_masked_smoothed10deg_fortran.fits healpy/test/data/wmap_band_iqumap_r9_7yr_W_v4_udgraded32_smoothed10deg_fortran.fits healpy/test/data/wmap_temperature_analysis_mask_r9_7yr_v4_udgraded32.fitshealpy-1.8.1/healpy/0000755000175000017500000000000012351601662014535 5ustar zoncazonca00000000000000healpy-1.8.1/healpy/sphtfunc.py0000644000175000017500000010030112346125412016732 0ustar zoncazonca00000000000000# # This file is part of Healpy. # # Healpy is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # Healpy is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with Healpy; if not, write to the Free Software # Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA # # For more information about Healpy, see http://code.google.com/p/healpy # import warnings import numpy as np import six pi = np.pi from . import _healpy_sph_transform_lib as sphtlib from . import _healpy_fitsio_lib as hfitslib from . import _sphtools as _sphtools from . import cookbook as cb import os.path from . import pixelfunc from .pixelfunc import maptype, UNSEEN, ma_to_array, accept_ma class FutureChangeWarning(UserWarning): pass DATAPATH = os.path.join(os.path.dirname(os.path.abspath(__file__)), 'data') # Spherical harmonics transformation def anafast(map1, map2 = None, nspec = None, lmax = None, mmax = None, iter = 3, alm = False, pol = True, use_weights = False, datapath = None): """Computes the power spectrum of an Healpix map, or the cross-spectrum between two maps if *map2* is given. No removal of monopole or dipole is performed. Parameters ---------- map1 : float, array-like shape (Npix,) or (3, Npix) Either an array representing a map, or a sequence of 3 arrays representing I, Q, U maps map2 : float, array-like shape (Npix,) or (3, Npix) Either an array representing a map, or a sequence of 3 arrays representing I, Q, U maps nspec : None or int, optional The number of spectra to return. If None, returns all, otherwise returns cls[:nspec] lmax : int, scalar, optional Maximum l of the power spectrum (default: 3*nside-1) mmax : int, scalar, optional Maximum m of the alm (default: lmax) iter : int, scalar, optional Number of iteration (default: 3) alm : bool, scalar, optional If True, returns both cl and alm, otherwise only cl is returned pol : bool, optional If True, assumes input maps are TQU. Output will be TEB cl's and correlations (input must be 1 or 3 maps). If False, maps are assumed to be described by spin 0 spherical harmonics. (input can be any number of maps) If there is only one input map, it has no effect. Default: True. datapath : None or str, optional If given, the directory where to find the weights data. Returns ------- res : array or sequence of arrays If *alm* is False, returns cl or a list of cl's (TT, EE, BB, TE, EB, TB for polarized input map) Otherwise, returns a tuple (cl, alm), where cl is as above and alm is the spherical harmonic transform or a list of almT, almE, almB for polarized input """ map1 = ma_to_array(map1) alms1 = map2alm(map1, lmax = lmax, mmax = mmax, pol = pol, iter = iter, use_weights = use_weights, datapath = datapath) if map2 is not None: map2 = ma_to_array(map2) alms2 = map2alm(map2, lmax = lmax, mmax = mmax, pol = pol, iter = iter, use_weights = use_weights, datapath = datapath) else: alms2 = None cls = alm2cl(alms1, alms2 = alms2, lmax = lmax, mmax = mmax, lmax_out = lmax, nspec = nspec) if alm: if map2 is not None: return (cls, alms1, alms2) else: return (cls, alms1) else: return cls def map2alm(maps, lmax = None, mmax = None, iter = 3, pol = True, use_weights = False, datapath = None): """Computes the alm of an Healpix map. Parameters ---------- maps : array-like, shape (Npix,) or (n, Npix) The input map or a list of n input maps. lmax : int, scalar, optional Maximum l of the power spectrum. Default: 3*nside-1 mmax : int, scalar, optional Maximum m of the alm. Default: lmax iter : int, scalar, optional Number of iteration (default: 3) pol : bool, optional If True, assumes input maps are TQU. Output will be TEB alm's. (input must be 1 or 3 maps) If False, apply spin 0 harmonic transform to each map. (input can be any number of maps) If there is only one input map, it has no effect. Default: True. use_weights: bool, scalar, optional If True, use the ring weighting. Default: False. datapath : None or str, optional If given, the directory where to find the weights data. Returns ------- alms : array or tuple of array alm or a tuple of 3 alm (almT, almE, almB) if polarized input. Notes ----- The pixels which have the special `UNSEEN` value are replaced by zeros before spherical harmonic transform. They are converted back to `UNSEEN` value, so that the input maps are not modified. Each map have its own, independent mask. """ maps = ma_to_array(maps) info = maptype(maps) if pol or info in (0, 1): alms = _sphtools.map2alm(maps, niter = iter, datapath = datapath, use_weights = use_weights, lmax = lmax, mmax = mmax) else: # info >= 2 and pol is False : spin 0 spht for each map alms = [_sphtools.map2alm(mm, niter = iter, datapath = datapath, use_weights = use_weights, lmax = lmax, mmax = mmax) for mm in maps] return alms def alm2map(alms, nside, lmax = None, mmax = None, pixwin = False, fwhm = 0.0, sigma = None, invert = False, pol = True, inplace = False, verbose=True): """Computes an Healpix map given the alm. The alm are given as a complex array. You can specify lmax and mmax, or they will be computed from array size (assuming lmax==mmax). Parameters ---------- alms : complex, array or sequence of arrays A complex array or a sequence of complex arrays. Each array must have a size of the form: mmax * (2 * lmax + 1 - mmax) / 2 + lmax + 1 nside : int, scalar The nside of the output map. lmax : None or int, scalar, optional Explicitly define lmax (needed if mmax!=lmax) mmax : None or int, scalar, optional Explicitly define mmax (needed if mmax!=lmax) pixwin : bool, optional Smooth the alm using the pixel window functions. Default: False. fwhm : float, scalar, optional The fwhm of the Gaussian used to smooth the map (applied on alm) [in radians] sigma : float, scalar, optional The sigma of the Gaussian used to smooth the map (applied on alm) [in radians] invert : bool, optional If True, alms are divided by Gaussian beam function (un-smooth). Otherwise, alms are multiplied by Gaussian beam function (smooth). Default: False. pol : bool, optional If True, assumes input alms are TEB. Output will be TQU maps. (input must be 1 or 3 alms) If False, apply spin 0 harmonic transform to each alm. (input can be any number of alms) If there is only one input alm, it has no effect. Default: True. inplace : bool, optional If True, input alms may be modified by pixel window function and beam smoothing (if alm(s) are complex128 contiguous arrays). Otherwise, input alms are not modified. A copy is made if needed to apply beam smoothing or pixel window. Returns ------- maps : array or list of arrays An Healpix map in RING scheme at nside or a list of T,Q,U maps (if polarized input) """ if not cb.is_seq(alms): raise TypeError("alms must be a sequence") alms = smoothalm(alms, fwhm = fwhm, sigma = sigma, invert = invert, pol = pol, inplace = inplace, verbose=verbose) if not cb.is_seq_of_seq(alms): alms = [alms] lonely = True else: lonely = False if pixwin: pw = globals()['pixwin'](nside,True) alms_new = [] for ialm, alm in enumerate(alms): pixelwindow = pw[1] if ialm >= 1 and pol else pw[0] alms_new.append(almxfl(alm, pixelwindow, inplace = inplace)) else: alms_new = alms if lmax is None: lmax = -1 if mmax is None: mmax = -1 if pol: output = sphtlib._alm2map(alms_new[0] if lonely else alms_new, nside, lmax = lmax, mmax = mmax) if lonely: output = [output] else: output = [sphtlib._alm2map(alm, nside, lmax = lmax, mmax = mmax) for alm in alms_new] if lonely: return output[0] else: return output def synalm(cls, lmax = None, mmax = None, new = False, verbose=True): """Generate a set of alm given cl. The cl are given as a float array. Corresponding alm are generated. If lmax is None, it is assumed lmax=cl.size-1 If mmax is None, it is assumed mmax=lmax. Parameters ---------- cls : float, array or tuple of arrays Either one cl (1D array) or a tuple of either 4 cl or of n*(n+1)/2 cl. Some of the cl may be None, implying no cross-correlation. See *new* parameter. lmax : int, scalar, optional The lmax (if None or <0, the largest size-1 of cls) mmax : int, scalar, optional The mmax (if None or <0, =lmax) new : bool, optional If True, use the new ordering of cl's, ie by diagonal (e.g. TT, EE, BB, TE, EB, TB or TT, EE, BB, TE if 4 cl as input). If False, use the old ordering, ie by row (e.g. TT, TE, TB, EE, EB, BB or TT, TE, EE, BB if 4 cl as input). Returns ------- alms : array or list of arrays the generated alm if one spectrum is given, or a list of n alms (with n(n+1)/2 the number of input cl, or n=3 if there are 4 input cl). Notes ----- The order of the spectra will change in a future release. The new= parameter help to make the transition smoother. You can start using the new order by setting new=True. In the next version of healpy, the default will be new=True. This change is done for consistency between the different tools (alm2cl, synfast, anafast). In the new order, the spectra are ordered by diagonal of the correlation matrix. Eg, if fields are T, E, B, the spectra are TT, EE, BB, TE, EB, TB with new=True, and TT, TE, TB, EE, EB, BB if new=False. """ if (not new) and verbose: warnings.warn("The order of the input cl's will change in a future " "release.\n" "Use new=True keyword to start using the new order.\n" "See documentation of healpy.synalm.", category=FutureChangeWarning) if not cb.is_seq(cls): raise TypeError('cls must be an array or a sequence of arrays') if not cb.is_seq_of_seq(cls): # Only one spectrum if lmax is None or lmax < 0: lmax = cls.size-1 if mmax is None or mmax < 0: mmax = lmax cls_list = [np.asarray(cls, dtype = np.float64)] szalm = Alm.getsize(lmax,mmax) alm = np.zeros(szalm,'D') alm.real = np.random.standard_normal(szalm) alm.imag = np.random.standard_normal(szalm) alms_list=[alm] sphtlib._synalm(cls_list,alms_list,lmax,mmax) return alm # From here, we interpret cls as a list of spectra cls_list = list(cls) maxsize = max([len(c) for c in cls]) if lmax is None or lmax < 0: lmax = maxsize-1 if mmax is None or mmax < 0: mmax = lmax Nspec = sphtlib._getn(len(cls_list)) if Nspec <= 0: if len(cls_list) == 4: if new: ## new input order: TT EE BB TE -> TT EE BB TE 0 0 cls_list = [cls[0], cls[1], cls[2], cls[3], None, None] else: ## old input order: TT TE EE BB -> TT TE 0 EE 0 BB cls_list = [cls[0], cls[1], None, cls[2], None, cls[3]] Nspec = 3 else: raise TypeError("The sequence of arrays must have either 4 elements " "or n(n+1)/2 elements (some may be None)") szalm = Alm.getsize(lmax,mmax) alms_list = [] for i in six.moves.xrange(Nspec): alm = np.zeros(szalm,'D') alm.real = np.random.standard_normal(szalm) alm.imag = np.random.standard_normal(szalm) alms_list.append(alm) if new: # new input order: input given by diagonal, should be given by row cls_list = new_to_old_spectra_order(cls_list) # ensure cls are float64 cls_list = [(np.asarray(cl, dtype = np.float64) if cl is not None else None) for cl in cls_list] sphtlib._synalm(cls_list, alms_list, lmax, mmax) return alms_list def synfast(cls, nside, lmax = None, mmax = None, alm = False, pol = True, pixwin = False, fwhm = 0.0, sigma = None, new = False, verbose=True): """Create a map(s) from cl(s). Parameters ---------- cls : array or tuple of array A cl or a list of cl (either 4 or 6, see :func:`synalm`) nside : int, scalar The nside of the output map(s) lmax : int, scalar, optional Maximum l for alm. Default: min of 3*nside-1 or length of the cls - 1 mmax : int, scalar, optional Maximum m for alm. alm : bool, scalar, optional If True, return also alm(s). Default: False. pol : bool, optional If True, assumes input cls are TEB and correlation. Output will be TQU maps. (input must be 1, 4 or 6 cl's) If False, fields are assumed to be described by spin 0 spherical harmonics. (input can be any number of cl's) If there is only one input cl, it has no effect. Default: True. pixwin : bool, scalar, optional If True, convolve the alm by the pixel window function. Default: False. fwhm : float, scalar, optional The fwhm of the Gaussian used to smooth the map (applied on alm) [in radians] sigma : float, scalar, optional The sigma of the Gaussian used to smooth the map (applied on alm) [in radians] Returns ------- maps : array or tuple of arrays The output map (possibly list of maps if polarized input). or, if alm is True, a tuple of (map,alm) (alm possibly a list of alm if polarized input) Notes ----- The order of the spectra will change in a future release. The new= parameter help to make the transition smoother. You can start using the new order by setting new=True. In the next version of healpy, the default will be new=True. This change is done for consistency between the different tools (alm2cl, synfast, anafast). In the new order, the spectra are ordered by diagonal of the correlation matrix. Eg, if fields are T, E, B, the spectra are TT, EE, BB, TE, EB, TB with new=True, and TT, TE, TB, EE, EB, BB if new=False. """ if not pixelfunc.isnsideok(nside): raise ValueError("Wrong nside value (must be a power of two).") cls_lmax = cb.len_array_or_arrays(cls) -1 if lmax is None or lmax < 0: lmax = min(cls_lmax, 3 * nside - 1) alms = synalm(cls, lmax = lmax, mmax = mmax, new = new, verbose=verbose) maps = alm2map(alms, nside, lmax = lmax, mmax = mmax, pixwin = pixwin, pol = pol, fwhm = fwhm, sigma = sigma, inplace = True, verbose=verbose) if alm: return maps, alms else: return maps class Alm(object): """This class provides some static methods for alm index computation. Methods ------- getlm getidx getsize getlmax """ def __init__(self): pass @staticmethod def getlm(lmax,i=None): """Get the l and m from index and lmax. Parameters ---------- lmax : int The maximum l defining the alm layout i : int or None The index for which to compute the l and m. If None, the function return l and m for i=0..Alm.getsize(lmax) """ if i is None: i=np.arange(Alm.getsize(lmax)) m=(np.ceil(((2*lmax+1)-np.sqrt((2*lmax+1)**2-8*(i-lmax)))/2)).astype(int) l = i-m*(2*lmax+1-m)//2 return (l,m) @staticmethod def getidx(lmax,l,m): """Returns index corresponding to (l,m) in an array describing alm up to lmax. Parameters ---------- lmax : int The maximum l, defines the alm layout l : int The l for which to get the index m : int The m for which to get the index Returns ------- idx : int The index corresponding to (l,m) """ return m*(2*lmax+1-m)//2+l @staticmethod def getsize(lmax,mmax = None): """Returns the size of the array needed to store alm up to *lmax* and *mmax* Parameters ---------- lmax : int The maximum l, defines the alm layout mmax : int, optional The maximum m, defines the alm layout. Default: lmax. Returns ------- size : int The size of the array needed to store alm up to lmax, mmax. """ if mmax is None or mmax < 0 or mmax > lmax: mmax = lmax return mmax * (2 * lmax + 1 - mmax) // 2 + lmax + 1 @staticmethod def getlmax(s, mmax = None): """Returns the lmax corresponding to a given array size. Parameters ---------- s : int Size of the array mmax : None or int, optional The maximum m, defines the alm layout. Default: lmax. Returns ------- lmax : int The maximum l of the array, or -1 if it is not a valid size. """ if mmax is not None and mmax >= 0: x = (2 * s + mmax ** 2 - mmax - 2) / (2 * mmax + 2) else: x = (-3 + np.sqrt(1 + 8 * s)) / 2 if x != np.floor(x): return -1 else: return int(x) def alm2cl(alms1, alms2 = None, lmax = None, mmax = None, lmax_out = None, nspec = None): """Computes (cross-)spectra from alm(s). If alm2 is given, cross-spectra between alm and alm2 are computed. If alm (and alm2 if provided) contains n alm, then n(n+1)/2 auto and cross-spectra are returned. Parameters ---------- alm : complex, array or sequence of arrays The alm from which to compute the power spectrum. If n>=2 arrays are given, computes both auto- and cross-spectra. alms2 : complex, array or sequence of 3 arrays, optional If provided, computes cross-spectra between alm and alm2. Default: alm2=alm, so auto-spectra are computed. lmax : None or int, optional The maximum l of the input alm. Default: computed from size of alm and mmax_in mmax : None or int, optional The maximum m of the input alm. Default: assume mmax_in = lmax_in lmax_out : None or int, optional The maximum l of the returned spectra. By default: the lmax of the given alm(s). nspec : None or int, optional The number of spectra to return. None means all, otherwise returns cl[:nspec] Returns ------- cl : array or tuple of n(n+1)/2 arrays the spectrum <*alm* x *alm2*> if *alm* (and *alm2*) is one alm, or the auto- and cross-spectra <*alm*[i] x *alm2*[j]> if alm (and alm2) contains more than one spectra. If more than one spectrum is returned, they are ordered by diagonal. For example, if *alm* is almT, almE, almB, then the returned spectra are: TT, EE, BB, TE, EB, TB. """ cls = _sphtools.alm2cl(alms1, alms2 = alms2, lmax = lmax, mmax = mmax, lmax_out = lmax_out) if nspec is None: return cls else: return cls[:nspec] def almxfl(alm, fl, mmax = None, inplace = False): """Multiply alm by a function of l. The function is assumed to be zero where not defined. Parameters ---------- alm : array The alm to multiply fl : array The function (at l=0..fl.size-1) by which alm must be multiplied. mmax : None or int, optional The maximum m defining the alm layout. Default: lmax. inplace : bool, optional If True, modify the given alm, otherwise make a copy before multiplying. Returns ------- alm : array The modified alm, either a new array or a reference to input alm, if inplace is True. """ almout = _sphtools.almxfl(alm, fl, mmax = mmax, inplace = inplace) return almout def smoothalm(alms, fwhm = 0.0, sigma = None, invert = False, pol = True, mmax = None, verbose = True, inplace = True): """Smooth alm with a Gaussian symmetric beam function. Parameters ---------- alms : array or sequence of 3 arrays Either an array representing one alm, or a sequence of arrays. See *pol* parameter. fwhm : float, optional The full width half max parameter of the Gaussian. Default:0.0 [in radians] sigma : float, optional The sigma of the Gaussian. Override fwhm. [in radians] invert : bool, optional If True, alms are divided by Gaussian beam function (un-smooth). Otherwise, alms are multiplied by Gaussian beam function (smooth). Default: False. pol : bool, optional If True, assumes input alms are TEB. Output will be TQU maps. (input must be 1 or 3 alms) If False, apply spin 0 harmonic transform to each alm. (input can be any number of alms) If there is only one input alm, it has no effect. Default: True. mmax : None or int, optional The maximum m for alm. Default: mmax=lmax inplace : bool, optional If True, the alm's are modified inplace if they are contiguous arrays of type complex128. Otherwise, a copy of alm is made. Default: True. verbose : bool, optional If True prints diagnostic information. Default: True Returns ------- alms : array or sequence of 3 arrays The smoothed alm. If alm[i] is a contiguous array of type complex128, and *inplace* is True the smoothing is applied inplace. Otherwise, a copy is made. """ if sigma is None: sigma = fwhm / (2.*np.sqrt(2.*np.log(2.))) if verbose: print("Sigma is {0:f} arcmin ({1:f} rad) ".format(sigma*60*180/pi,sigma)) print("-> fwhm is {0:f} arcmin".format(sigma*60*180/pi*(2.*np.sqrt(2.*np.log(2.))))) # Check alms if not cb.is_seq(alms): raise ValueError("alm must be a sequence") if sigma == 0: # nothing to be done return alms lonely = False if not cb.is_seq_of_seq(alms): alms = [alms] lonely = True # we have 3 alms -> apply smoothing to each map. # polarization has different B_l from temperature # exp{-[ell(ell+1) - s**2] * sigma**2/2} # with s the spin of spherical harmonics # s = 2 for pol, s=0 for temperature retalm = [] for ialm, alm in enumerate(alms): lmax = Alm.getlmax(len(alm), mmax) if lmax < 0: raise TypeError('Wrong alm size for the given ' 'mmax (len(alms[%d]) = %d).'%(ialm, len(alm))) ell = np.arange(lmax + 1.) s = 2 if ialm >= 1 and pol else 0 fact = np.exp(-0.5 * (ell * (ell + 1) - s ** 2) * sigma ** 2) res = almxfl(alm, fact, mmax = mmax, inplace = inplace) retalm.append(res) # Test what to return (inplace/not inplace...) # Case 1: 1d input, return 1d output if lonely: return retalm[0] # case 2: 2d input, check if in-place smoothing for all alm's for i in six.moves.xrange(len(alms)): samearray = alms[i] is retalm[i] if not samearray: # Case 2a: # at least one of the alm could not be smoothed in place: # return the list of alm return retalm # Case 2b: # all smoothing have been performed in place: # return the input alms return alms @accept_ma def smoothing(maps, fwhm = 0.0, sigma = None, invert = False, pol = True, iter = 3, lmax = None, mmax = None, use_weights = False, datapath = None, verbose = True): """Smooth a map with a Gaussian symmetric beam. No removal of monopole or dipole is performed. Parameters ---------- maps : array or sequence of 3 arrays Either an array representing one map, or a sequence of 3 arrays representing 3 maps, accepts masked arrays fwhm : float, optional The full width half max parameter of the Gaussian [in radians]. Default:0.0 sigma : float, optional The sigma of the Gaussian [in radians]. Override fwhm. invert : bool, optional If True, alms are divided by Gaussian beam function (un-smooth). Otherwise, alms are multiplied by Gaussian beam function (smooth). Default: False. pol : bool, optional If True, assumes input maps are TQU. Output will be TQU maps. (input must be 1 or 3 alms) If False, each map is assumed to be a spin 0 map and is treated independently (input can be any number of alms). If there is only one input map, it has no effect. Default: True. iter : int, scalar, optional Number of iteration (default: 3) lmax : int, scalar, optional Maximum l of the power spectrum. Default: 3*nside-1 mmax : int, scalar, optional Maximum m of the alm. Default: lmax use_weights: bool, scalar, optional If True, use the ring weighting. Default: False. datapath : None or str, optional If given, the directory where to find the weights data. verbose : bool, optional If True prints diagnostic information. Default: True Returns ------- maps : array or list of 3 arrays The smoothed map(s) """ if not cb.is_seq(maps): raise TypeError("maps must be a sequence") # save the masks of inputs masks = pixelfunc.mask_bad(maps) if cb.is_seq_of_seq(maps): nside = pixelfunc.npix2nside(len(maps[0])) n_maps = len(maps) else: nside = pixelfunc.npix2nside(len(maps)) n_maps = 0 if pol or n_maps in (0, 1): # Treat the maps together (1 or 3 maps) alms = map2alm(maps, lmax = lmax, mmax = mmax, iter = iter, pol = pol, use_weights = use_weights, datapath = datapath) smoothalm(alms, fwhm = fwhm, sigma = sigma, invert = invert, inplace = True, verbose = verbose) output_map = alm2map(alms, nside, pixwin = False, verbose=verbose) else: # Treat each map independently (any number) output_map = [] for m, mask in zip(maps, masks): alm = map2alm(maps, iter = iter, pol = pol, use_weights = use_weights, datapath = datapath) smoothalm(alm, fwhm = fwhm, sigma = sigma, invert = invert, inplace = True, verbose = verbose) output_map.append(alm2map(alm, nside, pixwin = False, verbose=verbose)) if pixelfunc.maptype(output_map) == 0: output_map[masks.flatten()] = UNSEEN else: for m, mask in zip(output_map, masks): m[mask] = UNSEEN return output_map def pixwin(nside, pol = False): """Return the pixel window function for the given nside. Parameters ---------- nside : int The nside for which to return the pixel window function pol : bool, optional If True, return also the polar pixel window. Default: False Returns ------- pw or pwT,pwP : array or tuple of 2 arrays The temperature pixel window function, or a tuple with both temperature and polarisation pixel window functions. """ datapath = DATAPATH if not pixelfunc.isnsideok(nside): raise ValueError("Wrong nside value (must be a power of two).") fname = os.path.join(datapath, 'pixel_window_n%04d.fits'%nside) if not os.path.isfile(fname): raise ValueError("No pixel window for this nside " "or data files missing") # return hfitslib._pixwin(nside,datapath,pol) ## BROKEN -> seg fault... try: import pyfits except ImportError: raise ImportError("You need to install pyfits to use this function.") pw = pyfits.getdata(fname) pw_temp, pw_pol = pw.field(0), pw.field(1) if pol: return pw_temp, pw_pol else: return pw_temp def alm2map_der1(alm, nside, lmax = None, mmax = None): """Computes an Healpix map and its first derivatives given the alm. The alm are given as a complex array. You can specify lmax and mmax, or they will be computed from array size (assuming lmax==mmax). Parameters ---------- alm : array, complex A complex array of alm. Size must be of the form mmax(lmax-mmax+1)/2+lmax nside : int The nside of the output map. lmax : None or int, optional Explicitly define lmax (needed if mmax!=lmax) mmax : None or int, optional Explicitly define mmax (needed if mmax!=lmax) Returns ------- m, d_theta, d_phi : tuple of arrays The maps correponding to alm, and its derivatives with respect to theta and phi. d_phi is already divided by sin(theta) """ if lmax is None: lmax = -1 if mmax is None: mmax = -1 return sphtlib._alm2map_der1(alm,nside,lmax=lmax,mmax=mmax) def new_to_old_spectra_order(cls_new_order): """Reorder the cls from new order (by diagonal) to old order (by row). For example : TT, EE, BB, TE, EB, BB => TT, TE, TB, EE, EB, BB """ Nspec = sphtlib._getn(len(cls_new_order)) if Nspec < 0: raise ValueError("Input must be a list of n(n+1)/2 arrays") cls_old_order = [] for i in six.moves.xrange(Nspec): for j in six.moves.xrange(i, Nspec): p = j - i q = i idx_new = p * (2 * Nspec + 1 - p) / 2 + q cls_old_order.append(cls_new_order[idx_new]) return cls_old_order def load_sample_spectra(): """Read a sample power spectra for testing and demo purpose. Based on LambdaCDM. Gives TT, EE, BB, TE. Returns ------- ell, f, cls : arrays ell is the array of ell values (from 0 to lmax) f is the factor ell*(ell+1)/2pi (in general, plots show f * cl) cls is a sequence of the power spectra TT, EE, BB and TE """ cls = np.loadtxt(os.path.join(DATAPATH, 'totcls.dat'), unpack = True) ell = cls[0] f = ell * (ell + 1) / 2 / np.pi cls[1:, 1:] /= f[1:] return ell, f, cls[1:] def gauss_beam(fwhm, lmax=512, pol=False): """Gaussian beam window function Computes the spherical transform of an axisimmetric gaussian beam For a sky of underlying power spectrum C(l) observed with beam of given FWHM, the measured power spectrum will be C(l)_meas = C(l) B(l)^2 where B(l) is given by gaussbeam(Fwhm,Lmax). The polarization beam is also provided (when pol = True ) assuming a perfectly co-polarized beam (e.g., Challinor et al 2000, astro-ph/0008228) Parameters ---------- fwhm : float full width half max in radians lmax : integer ell max pol : bool if False, output has size (lmax+1) and is temperature beam if True output has size (lmax+1, 4) with components: * temperature beam * grad/electric polarization beam * curl/magnetic polarization beam * temperature * grad beam Returns ------- beam : array beam window function [0, lmax] if dim not specified otherwise (lmax+1, 4) contains polarized beam """ sigma = fwhm / np.sqrt(8. * np.log(2.)) ell = np.arange(lmax + 1) sigma2 = sigma ** 2 g = np.exp(-.5 * ell * (ell + 1) * sigma2) if not pol: # temperature-only beam return g else: # polarization beam # polarization factors [1, 2 sigma^2, 2 sigma^2, sigma^2] pol_factor = np.exp([0., 2*sigma2, 2*sigma2, sigma2]) return g[:, np.newaxis] * pol_factor healpy-1.8.1/healpy/src/0000755000175000017500000000000012351601662015324 5ustar zoncazonca00000000000000healpy-1.8.1/healpy/src/_query_disc.pyx0000644000175000017500000003000512351601276020373 0ustar zoncazonca00000000000000# Wrapper around the query_disc method of Healpix_base class import numpy as np cimport numpy as np from libcpp cimport bool from libcpp.vector cimport vector cimport cython from _common cimport int64, pointing, rangeset, vec3, Healpix_Ordering_Scheme, RING, NEST, SET_NSIDE, T_Healpix_Base @cython.boundscheck(False) @cython.wraparound(False) def query_disc(nside, vec, radius, inclusive = False, fact = 4, nest = False, np.ndarray[np.int64_t, ndim=1] buff=None): """Returns pixels whose centers lie within the disk defined by *vec* and *radius* (in radians) (if *inclusive* is False), or which overlap with this disk (if *inclusive* is True). Parameters ---------- nside : int The nside of the Healpix map. vec : float, sequence of 3 elements The coordinates of unit vector defining the disk center. radius : float The radius (in radians) of the disk inclusive : bool, optional If False, return the exact set of pixels whose pixel centers lie within the disk; if True, return all pixels that overlap with the disk, and maybe a few more. Default: False fact : int, optional Only used when inclusive=True. The overlapping test will be done at the resolution fact*nside. For NESTED ordering, fact must be a power of 2, less than 2**30, else it can be any positive integer. Default: 4. nest: bool, optional if True, assume NESTED pixel ordering, otherwise, RING pixel ordering buff: int array, optional if provided, this numpy array is used to contain the return values and must be at least long enough to do so Returns ------- ipix : int, array The pixels which lie within the given disk. Note ---- This method is more efficient in the RING scheme. For inclusive=True, the algorithm may return some pixels which don't overlap with the disk at all. The higher fact is chosen, the fewer false positives are returned, at the cost of increased run time. """ # Check Nside value if not isnsideok(nside): raise ValueError('Wrong nside value, must be a power of 2, less than 2**30') cdef vec3 v = vec3(vec[0], vec[1], vec[2]) cdef Healpix_Ordering_Scheme scheme if nest: scheme = NEST else: scheme = RING cdef T_Healpix_Base[int64] hb = T_Healpix_Base[int64](nside, scheme, SET_NSIDE) cdef rangeset[int64] pixset cdef int factor = fact cdef pointing ptg = pointing(v) ptg.normalize() if inclusive: factor = abs(fact) if nest and (factor == 0 or (factor & (factor - 1) != 0)): raise ValueError('fact must be a power of 2, less than 2**30 when ' 'nest is True (fact=%d)' % (fact)) hb.query_disc_inclusive(ptg, radius, pixset, factor) else: hb.query_disc(ptg, radius, pixset) return pixset_to_array(pixset, buff) def query_polygon(nside, vertices, inclusive = False, fact = 4, nest = False, np.ndarray[np.int64_t, ndim=1] buff=None): """ Returns the pixels whose centers lie within the convex polygon defined by the *vertices* array (if *inclusive* is False), or which overlap with this polygon (if *inclusive* is True). Parameters ---------- nside : int The nside of the Healpix map. vertices : float, array-like Vertex array containing the vertices of the polygon, shape (N, 3). inclusive : bool, optional If False, return the exact set of pixels whose pixel centers lie within the polygon; if True, return all pixels that overlap with the polygon, and maybe a few more. Default: False. fact : int, optional Only used when inclusive=True. The overlapping test will be done at the resolution fact*nside. For NESTED ordering, fact must be a power of 2, less than 2**30, else it can be any positive integer. Default: 4. nest: bool, optional if True, assume NESTED pixel ordering, otherwise, RING pixel ordering buff: int array, optional if provided, this numpy array is used to contain the return values and must be at least long enough to do so Returns ------- ipix : int, array The pixels which lie within the given polygon. Note ---- This method is more efficient in the RING scheme. For inclusive=True, the algorithm may return some pixels which don't overlap with the disk at all. The higher fact is chosen, the fewer false positives are returned, at the cost of increased run time. """ # Check Nside value if not isnsideok(nside): raise ValueError('Wrong nside value, must be a power of 2, less than 2**30') # Create vector of vertices cdef vector[pointing] vert cdef pointing ptg for v in vertices: ptg = pointing(vec3(v[0], v[1], v[2])) ptg.normalize() vert.push_back(ptg) # Create the Healpix_Base2 structure cdef Healpix_Ordering_Scheme scheme if nest: scheme = NEST else: scheme = RING cdef T_Healpix_Base[int64] hb = T_Healpix_Base[int64](nside, scheme, SET_NSIDE) # Call query_polygon cdef rangeset[int64] pixset cdef int factor if inclusive: factor = abs(fact) if nest and (factor == 0 or (factor & (factor - 1) != 0)): raise ValueError('fact must be a power of 2, less than 2**30 when ' 'nest is True (fact=%d)' % (fact)) hb.query_polygon_inclusive(vert, pixset, factor) else: hb.query_polygon(vert, pixset) return pixset_to_array(pixset, buff) def query_strip(nside, theta1, theta2, inclusive = False, nest = False, np.ndarray[np.int64_t, ndim=1] buff=None): """Returns pixels whose centers lie within the colatitude range defined by *theta1* and *theta2* (if inclusive is False), or which overlap with this region (if *inclusive* is True). If theta1= (12*nside*nside): raise ValueError('Pixel identifier is too large') hb.boundaries(pix, step, bounds) cdef size_t n = bounds.size() cdef np.ndarray[double, ndim = 2] out = np.empty((3, n), dtype=np.float) for i in range(n): out[0,i] = bounds[i].x out[1,i] = bounds[i].y out[2,i] = bounds[i].z return out def _boundaries_multiple(nside, pix, step=1, nest=False): cdef Healpix_Ordering_Scheme scheme if nest: scheme = NEST else: scheme = RING cdef T_Healpix_Base[int64] hb = T_Healpix_Base[int64](nside, scheme, SET_NSIDE) cdef size_t npix = len(pix) cdef size_t n = step * 4 cdef size_t maxnpix = 12*nside*nside cdef np.ndarray[double, ndim = 3] out = np.empty((npix, 3, n), dtype=np.float) cdef vector[vec3] bounds for j in range(npix): if pix[j] >= maxnpix: raise ValueError('Pixel identifier is too large') hb.boundaries(pix[j], step, bounds) for i in range(n): out[j, 0, i] = bounds[i].x out[j, 1, i] = bounds[i].y out[j, 2, i] = bounds[i].z return out def boundaries(nside, pix, step=1, nest=False): """Returns an array containing vectors to the boundary of the nominated pixel. The returned array has shape (3, 4*step), the elements of which are the x,y,z positions on the unit sphere of the pixel boundary. In order to get vector positions for just the corners, specify step=1. Parameters ---------- nside : int The nside of the Healpix map. pix : int Pixel identifier step : int, optional Number of elements for each side of the pixel. nest : bool, optional if True, assume NESTED pixel ordering, otherwise, RING pixel ordering Returns ------- boundary : float, array x,y,z for positions on the boundary of the pixel Example ------- # Get corners of HEALPixel 5 in nside=2, RINGS ordering. >>> import healpy as hp >>> import numpy as np >>> nside = 2 >>> corners = hp.boundaries(nside, 5) # Now convert to phi,theta representation: >>> phi_theta = hp.vec2ang(np.transpose(corners)) >>> corners = hp.boundaries(nside, np.array([5,5])) # doctest moved to test_query_disc.py """ if not isnsideok(nside): raise ValueError('Wrong nside value, must be a power of 2, less than 2**30') if isinstance(pix, (int, long)): return _boundaries_single(nside, pix, step=step, nest=nest) if type(pix) is np.ndarray: if not issubclass(pix.dtype.type, np.integer): raise ValueError('Array of pixels has to be integers') if pix.ndim!=1: raise ValueError('Array has to one dimensional') return _boundaries_multiple(nside, pix, step=step, nest=nest) # Try to implement pix2ang ### @cython.boundscheck(False) ### @cython.wraparound(False) ### def pix2ang(nside, ipix, nest = False): ### # Check Nside value ### if not isnsideok(nside): ### raise ValueError('Wrong nside value, must be a power of 2, less than 2**30') ### # Create the Healpix_Base2 structure ### cdef Healpix_Ordering_Scheme scheme ### if nest: ### scheme = NEST ### else: ### scheme = RING ### cdef T_Healpix_Base[int64] hb = T_Healpix_Base[int64](nside, scheme, SET_NSIDE) ### cdef pointing p ### ipix_ = np.asarray(ipix, dtype = np.int64) ### out_shape = (2,) + ipix_.shape ### out = np.empty(out_shape, dtype = np.float64) ### cdef np.ndarray[int64, ndim = 1] ipix_r = ipix_.reshape(-1) ### cdef np.ndarray[double, ndim = 2] out_r = out.reshape(2, -1) ### cdef int i, n ### n = ipix_r.size ### for i in range(n): ### p = hb.pix2ang(ipix_r[i]) ### out_r[0, i] = p.theta ### out_r[1, i] = p.phi ### del out_r, ipix_r, ipix_ ### return out @cython.boundscheck(False) @cython.wraparound(False) cdef pixset_to_array(rangeset[int64] &pixset, buff=None): cdef int64 i, n n = pixset.nval() cdef np.ndarray[np.int64_t, ndim=1] ipix if buff is None : ipix = np.empty(n, dtype=np.int64) else : if n>=len(buff) : raise ValueError("Buffer too small to contain return value") ipix = buff[:n] cdef int64 a, b, ii, ip ii = 0 n = pixset.size() for i in range(n): a = pixset.ivbegin(i) b = pixset.ivend(i) for ip in range(a, b): ipix[ii] = ip ii += 1 return ipix cdef bool isnsideok(int nside): return nside > 0 and ((nside & (nside -1))==0) healpy-1.8.1/healpy/src/_query_disc.cpp0000644000175000017500000146374112346125214020354 0ustar zoncazonca00000000000000/* Generated by Cython 0.20.1 on Wed Jun 11 12:14:20 2014 */ #define PY_SSIZE_T_CLEAN #ifndef CYTHON_USE_PYLONG_INTERNALS #ifdef PYLONG_BITS_IN_DIGIT #define CYTHON_USE_PYLONG_INTERNALS 0 #else #include "pyconfig.h" #ifdef PYLONG_BITS_IN_DIGIT #define CYTHON_USE_PYLONG_INTERNALS 1 #else #define CYTHON_USE_PYLONG_INTERNALS 0 #endif #endif #endif #include "Python.h" #ifndef Py_PYTHON_H #error Python headers needed to compile C extensions, please install development version of Python. #elif PY_VERSION_HEX < 0x02040000 #error Cython requires Python 2.4+. #else #define CYTHON_ABI "0_20_1" #include /* For offsetof */ #ifndef offsetof #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) #endif #if !defined(WIN32) && !defined(MS_WINDOWS) #ifndef __stdcall #define __stdcall #endif #ifndef __cdecl #define __cdecl #endif #ifndef __fastcall #define __fastcall #endif #endif #ifndef DL_IMPORT #define DL_IMPORT(t) t #endif #ifndef DL_EXPORT #define DL_EXPORT(t) t #endif #ifndef PY_LONG_LONG #define PY_LONG_LONG LONG_LONG #endif #ifndef Py_HUGE_VAL #define Py_HUGE_VAL HUGE_VAL #endif #ifdef PYPY_VERSION #define CYTHON_COMPILING_IN_PYPY 1 #define CYTHON_COMPILING_IN_CPYTHON 0 #else #define CYTHON_COMPILING_IN_PYPY 0 #define CYTHON_COMPILING_IN_CPYTHON 1 #endif #if CYTHON_COMPILING_IN_PYPY #define Py_OptimizeFlag 0 #endif #if PY_VERSION_HEX < 0x02050000 typedef int Py_ssize_t; #define PY_SSIZE_T_MAX INT_MAX #define PY_SSIZE_T_MIN INT_MIN #define PY_FORMAT_SIZE_T "" #define CYTHON_FORMAT_SSIZE_T "" #define PyInt_FromSsize_t(z) PyInt_FromLong(z) #define PyInt_AsSsize_t(o) __Pyx_PyInt_As_int(o) #define PyNumber_Index(o) ((PyNumber_Check(o) && !PyFloat_Check(o)) ? PyNumber_Int(o) : \ (PyErr_Format(PyExc_TypeError, \ "expected index value, got %.200s", Py_TYPE(o)->tp_name), \ (PyObject*)0)) #define __Pyx_PyIndex_Check(o) (PyNumber_Check(o) && !PyFloat_Check(o) && \ !PyComplex_Check(o)) #define PyIndex_Check __Pyx_PyIndex_Check #define PyErr_WarnEx(category, message, stacklevel) PyErr_Warn(category, message) #define __PYX_BUILD_PY_SSIZE_T "i" #else #define __PYX_BUILD_PY_SSIZE_T "n" #define CYTHON_FORMAT_SSIZE_T "z" #define __Pyx_PyIndex_Check PyIndex_Check #endif #if PY_VERSION_HEX < 0x02060000 #define Py_REFCNT(ob) (((PyObject*)(ob))->ob_refcnt) #define Py_TYPE(ob) (((PyObject*)(ob))->ob_type) #define Py_SIZE(ob) (((PyVarObject*)(ob))->ob_size) #define PyVarObject_HEAD_INIT(type, size) \ PyObject_HEAD_INIT(type) size, #define PyType_Modified(t) typedef struct { void *buf; PyObject *obj; Py_ssize_t len; Py_ssize_t itemsize; int readonly; int ndim; char *format; Py_ssize_t *shape; Py_ssize_t *strides; Py_ssize_t *suboffsets; void *internal; } Py_buffer; #define PyBUF_SIMPLE 0 #define PyBUF_WRITABLE 0x0001 #define PyBUF_FORMAT 0x0004 #define PyBUF_ND 0x0008 #define PyBUF_STRIDES (0x0010 | PyBUF_ND) #define PyBUF_C_CONTIGUOUS (0x0020 | PyBUF_STRIDES) #define PyBUF_F_CONTIGUOUS (0x0040 | PyBUF_STRIDES) #define PyBUF_ANY_CONTIGUOUS (0x0080 | PyBUF_STRIDES) #define PyBUF_INDIRECT (0x0100 | PyBUF_STRIDES) #define PyBUF_RECORDS (PyBUF_STRIDES | PyBUF_FORMAT | PyBUF_WRITABLE) #define PyBUF_FULL (PyBUF_INDIRECT | PyBUF_FORMAT | PyBUF_WRITABLE) typedef int (*getbufferproc)(PyObject *, Py_buffer *, int); typedef void (*releasebufferproc)(PyObject *, Py_buffer *); #endif #if PY_MAJOR_VERSION < 3 #define __Pyx_BUILTIN_MODULE_NAME "__builtin__" #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \ PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) #define __Pyx_DefaultClassType PyClass_Type #else #define __Pyx_BUILTIN_MODULE_NAME "builtins" #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \ PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) #define __Pyx_DefaultClassType PyType_Type #endif #if PY_VERSION_HEX < 0x02060000 #define PyUnicode_FromString(s) PyUnicode_Decode(s, strlen(s), "UTF-8", "strict") #endif #if PY_MAJOR_VERSION >= 3 #define Py_TPFLAGS_CHECKTYPES 0 #define Py_TPFLAGS_HAVE_INDEX 0 #endif #if (PY_VERSION_HEX < 0x02060000) || (PY_MAJOR_VERSION >= 3) #define Py_TPFLAGS_HAVE_NEWBUFFER 0 #endif #if PY_VERSION_HEX < 0x02060000 #define Py_TPFLAGS_HAVE_VERSION_TAG 0 #endif #if PY_VERSION_HEX < 0x02060000 && !defined(Py_TPFLAGS_IS_ABSTRACT) #define Py_TPFLAGS_IS_ABSTRACT 0 #endif #if PY_VERSION_HEX < 0x030400a1 && !defined(Py_TPFLAGS_HAVE_FINALIZE) #define Py_TPFLAGS_HAVE_FINALIZE 0 #endif #if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND) #define CYTHON_PEP393_ENABLED 1 #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ? \ 0 : _PyUnicode_Ready((PyObject *)(op))) #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u) #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i) #define __Pyx_PyUnicode_KIND(u) PyUnicode_KIND(u) #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u) #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i) #else #define CYTHON_PEP393_ENABLED 0 #define __Pyx_PyUnicode_READY(op) (0) #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u) #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i])) #define __Pyx_PyUnicode_KIND(u) (sizeof(Py_UNICODE)) #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u)) #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i])) #endif #if CYTHON_COMPILING_IN_PYPY #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b) #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b) #else #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b) #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ? \ PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b)) #endif #define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? 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PyNumber_Remainder(a, b) : PyUnicode_Format(a, b)) #if PY_MAJOR_VERSION >= 3 #define __Pyx_PyString_Format(a, b) PyUnicode_Format(a, b) #else #define __Pyx_PyString_Format(a, b) PyString_Format(a, b) #endif #if PY_MAJOR_VERSION >= 3 #define PyBaseString_Type PyUnicode_Type #define PyStringObject PyUnicodeObject #define PyString_Type PyUnicode_Type #define PyString_Check PyUnicode_Check #define PyString_CheckExact PyUnicode_CheckExact #endif #if PY_VERSION_HEX < 0x02060000 #define PyBytesObject PyStringObject #define PyBytes_Type PyString_Type #define PyBytes_Check PyString_Check #define PyBytes_CheckExact PyString_CheckExact #define PyBytes_FromString PyString_FromString #define PyBytes_FromStringAndSize PyString_FromStringAndSize #define PyBytes_FromFormat PyString_FromFormat #define PyBytes_DecodeEscape PyString_DecodeEscape #define PyBytes_AsString PyString_AsString #define PyBytes_AsStringAndSize PyString_AsStringAndSize #define PyBytes_Size PyString_Size #define PyBytes_AS_STRING PyString_AS_STRING #define PyBytes_GET_SIZE PyString_GET_SIZE #define PyBytes_Repr PyString_Repr #define PyBytes_Concat PyString_Concat #define PyBytes_ConcatAndDel PyString_ConcatAndDel #endif #if PY_MAJOR_VERSION >= 3 #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj) #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj) #else #define __Pyx_PyBaseString_Check(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj) || \ PyString_Check(obj) || PyUnicode_Check(obj)) #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj)) #endif #if PY_VERSION_HEX < 0x02060000 #define PySet_Check(obj) PyObject_TypeCheck(obj, &PySet_Type) #define PyFrozenSet_Check(obj) PyObject_TypeCheck(obj, &PyFrozenSet_Type) #endif #ifndef PySet_CheckExact #define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type) #endif #define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type) #if PY_MAJOR_VERSION >= 3 #define PyIntObject PyLongObject #define PyInt_Type PyLong_Type #define PyInt_Check(op) PyLong_Check(op) #define PyInt_CheckExact(op) PyLong_CheckExact(op) #define PyInt_FromString PyLong_FromString #define PyInt_FromUnicode PyLong_FromUnicode #define PyInt_FromLong PyLong_FromLong #define PyInt_FromSize_t PyLong_FromSize_t #define PyInt_FromSsize_t PyLong_FromSsize_t #define PyInt_AsLong PyLong_AsLong #define PyInt_AS_LONG PyLong_AS_LONG #define PyInt_AsSsize_t PyLong_AsSsize_t #define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask #define PyNumber_Int PyNumber_Long #endif #if PY_MAJOR_VERSION >= 3 #define PyBoolObject PyLongObject #endif #if PY_VERSION_HEX < 0x030200A4 typedef long Py_hash_t; #define __Pyx_PyInt_FromHash_t PyInt_FromLong #define __Pyx_PyInt_AsHash_t PyInt_AsLong #else #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t #define __Pyx_PyInt_AsHash_t PyInt_AsSsize_t #endif #if (PY_MAJOR_VERSION < 3) || (PY_VERSION_HEX >= 0x03010300) #define __Pyx_PySequence_GetSlice(obj, a, b) PySequence_GetSlice(obj, a, b) #define __Pyx_PySequence_SetSlice(obj, a, b, value) PySequence_SetSlice(obj, a, b, value) #define __Pyx_PySequence_DelSlice(obj, a, b) PySequence_DelSlice(obj, a, b) #else #define __Pyx_PySequence_GetSlice(obj, a, b) (unlikely(!(obj)) ? \ (PyErr_SetString(PyExc_SystemError, "null argument to internal routine"), (PyObject*)0) : \ (likely((obj)->ob_type->tp_as_mapping) ? (PySequence_GetSlice(obj, a, b)) : \ (PyErr_Format(PyExc_TypeError, "'%.200s' object is unsliceable", (obj)->ob_type->tp_name), (PyObject*)0))) #define __Pyx_PySequence_SetSlice(obj, a, b, value) (unlikely(!(obj)) ? \ (PyErr_SetString(PyExc_SystemError, "null argument to internal routine"), -1) : \ (likely((obj)->ob_type->tp_as_mapping) ? (PySequence_SetSlice(obj, a, b, value)) : \ (PyErr_Format(PyExc_TypeError, "'%.200s' object doesn't support slice assignment", (obj)->ob_type->tp_name), -1))) #define __Pyx_PySequence_DelSlice(obj, a, b) (unlikely(!(obj)) ? \ (PyErr_SetString(PyExc_SystemError, "null argument to internal routine"), -1) : \ (likely((obj)->ob_type->tp_as_mapping) ? (PySequence_DelSlice(obj, a, b)) : \ (PyErr_Format(PyExc_TypeError, "'%.200s' object doesn't support slice deletion", (obj)->ob_type->tp_name), -1))) #endif #if PY_MAJOR_VERSION >= 3 #define PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : PyInstanceMethod_New(func)) #endif #if PY_VERSION_HEX < 0x02050000 #define __Pyx_GetAttrString(o,n) PyObject_GetAttrString((o),((char *)(n))) #define __Pyx_SetAttrString(o,n,a) PyObject_SetAttrString((o),((char *)(n)),(a)) #define __Pyx_DelAttrString(o,n) PyObject_DelAttrString((o),((char *)(n))) #else #define __Pyx_GetAttrString(o,n) PyObject_GetAttrString((o),(n)) #define __Pyx_SetAttrString(o,n,a) PyObject_SetAttrString((o),(n),(a)) #define __Pyx_DelAttrString(o,n) PyObject_DelAttrString((o),(n)) #endif #if PY_VERSION_HEX < 0x02050000 #define __Pyx_NAMESTR(n) ((char *)(n)) #define __Pyx_DOCSTR(n) ((char *)(n)) #else #define __Pyx_NAMESTR(n) (n) #define __Pyx_DOCSTR(n) (n) #endif #ifndef CYTHON_INLINE #if defined(__GNUC__) #define CYTHON_INLINE __inline__ #elif defined(_MSC_VER) #define CYTHON_INLINE __inline #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L #define CYTHON_INLINE inline #else #define CYTHON_INLINE #endif #endif #ifndef CYTHON_RESTRICT #if defined(__GNUC__) #define CYTHON_RESTRICT __restrict__ #elif defined(_MSC_VER) && _MSC_VER >= 1400 #define CYTHON_RESTRICT __restrict #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L #define CYTHON_RESTRICT restrict #else #define CYTHON_RESTRICT #endif #endif #ifdef NAN #define __PYX_NAN() ((float) NAN) #else static CYTHON_INLINE float __PYX_NAN() { /* Initialize NaN. The sign is irrelevant, an exponent with all bits 1 and a nonzero mantissa means NaN. If the first bit in the mantissa is 1, it is a quiet NaN. */ float value; memset(&value, 0xFF, sizeof(value)); return value; } #endif #if PY_MAJOR_VERSION >= 3 #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) #else #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y) #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y) #endif #ifndef __PYX_EXTERN_C #ifdef __cplusplus #define __PYX_EXTERN_C extern "C" #else #define __PYX_EXTERN_C extern #endif #endif #if defined(WIN32) || defined(MS_WINDOWS) #define _USE_MATH_DEFINES #endif #include #define __PYX_HAVE__healpy___query_disc #define __PYX_HAVE_API__healpy___query_disc #include "string.h" #include "stdio.h" #include "stdlib.h" #include "numpy/arrayobject.h" #include "numpy/ufuncobject.h" #include #include "ios" #include "new" #include "stdexcept" #include "typeinfo" #include "stddef.h" #include "datatypes.h" #include "xcomplex.h" #include "arr.h" #include "rangeset.h" #include "vec3.h" #include "pointing.h" #include "healpix_base.h" #include "healpix_map.h" #include "alm.h" #ifdef _OPENMP #include #endif /* _OPENMP */ #ifdef PYREX_WITHOUT_ASSERTIONS #define CYTHON_WITHOUT_ASSERTIONS #endif #ifndef CYTHON_UNUSED # if defined(__GNUC__) # if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) # define CYTHON_UNUSED __attribute__ ((__unused__)) # else # define CYTHON_UNUSED # endif # elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) # define CYTHON_UNUSED __attribute__ ((__unused__)) # else # define CYTHON_UNUSED # endif #endif typedef struct {PyObject **p; char *s; const Py_ssize_t n; const char* encoding; const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; /*proto*/ #define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0 #define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT 0 #define __PYX_DEFAULT_STRING_ENCODING "" #define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString #define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize #define __Pyx_fits_Py_ssize_t(v, type, is_signed) ( \ (sizeof(type) < sizeof(Py_ssize_t)) || \ (sizeof(type) > sizeof(Py_ssize_t) && \ likely(v < (type)PY_SSIZE_T_MAX || \ v == (type)PY_SSIZE_T_MAX) && \ (!is_signed || likely(v > (type)PY_SSIZE_T_MIN || \ v == (type)PY_SSIZE_T_MIN))) || \ (sizeof(type) == sizeof(Py_ssize_t) && \ (is_signed || likely(v < (type)PY_SSIZE_T_MAX || \ v == (type)PY_SSIZE_T_MAX))) ) static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject*); static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); #define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s)) #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) #define __Pyx_PyBytes_FromString PyBytes_FromString #define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(char*); #if PY_MAJOR_VERSION < 3 #define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize #else #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize #endif #define __Pyx_PyObject_AsSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_AsUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_FromUString(s) __Pyx_PyObject_FromString((char*)s) #define __Pyx_PyBytes_FromUString(s) __Pyx_PyBytes_FromString((char*)s) #define __Pyx_PyByteArray_FromUString(s) __Pyx_PyByteArray_FromString((char*)s) #define __Pyx_PyStr_FromUString(s) __Pyx_PyStr_FromString((char*)s) #define __Pyx_PyUnicode_FromUString(s) __Pyx_PyUnicode_FromString((char*)s) #if PY_MAJOR_VERSION < 3 static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) { const Py_UNICODE *u_end = u; while (*u_end++) ; return u_end - u - 1; } #else #define __Pyx_Py_UNICODE_strlen Py_UNICODE_strlen #endif #define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u)) #define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode #define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode #define __Pyx_Owned_Py_None(b) (Py_INCREF(Py_None), Py_None) #define __Pyx_PyBool_FromLong(b) ((b) ? (Py_INCREF(Py_True), Py_True) : (Py_INCREF(Py_False), Py_False)) static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*); static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x); static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*); static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t); #if CYTHON_COMPILING_IN_CPYTHON #define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x)) #else #define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x) #endif #define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x)) #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII static int __Pyx_sys_getdefaultencoding_not_ascii; static int __Pyx_init_sys_getdefaultencoding_params(void) { PyObject* sys = NULL; PyObject* default_encoding = NULL; PyObject* ascii_chars_u = NULL; PyObject* ascii_chars_b = NULL; sys = PyImport_ImportModule("sys"); if (sys == NULL) goto bad; default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); if (default_encoding == NULL) goto bad; if (strcmp(PyBytes_AsString(default_encoding), "ascii") == 0) { __Pyx_sys_getdefaultencoding_not_ascii = 0; } else { const char* default_encoding_c = PyBytes_AS_STRING(default_encoding); char ascii_chars[128]; int c; for (c = 0; c < 128; c++) { ascii_chars[c] = c; } __Pyx_sys_getdefaultencoding_not_ascii = 1; ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL); if (ascii_chars_u == NULL) goto bad; ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL); if (ascii_chars_b == NULL || strncmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) { PyErr_Format( PyExc_ValueError, "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.", default_encoding_c); goto bad; } } Py_XDECREF(sys); Py_XDECREF(default_encoding); Py_XDECREF(ascii_chars_u); Py_XDECREF(ascii_chars_b); return 0; bad: Py_XDECREF(sys); Py_XDECREF(default_encoding); Py_XDECREF(ascii_chars_u); Py_XDECREF(ascii_chars_b); return -1; } #endif #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3 #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL) #else #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL) #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT static char* __PYX_DEFAULT_STRING_ENCODING; static int __Pyx_init_sys_getdefaultencoding_params(void) { PyObject* sys = NULL; PyObject* default_encoding = NULL; char* default_encoding_c; sys = PyImport_ImportModule("sys"); if (sys == NULL) goto bad; default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); if (default_encoding == NULL) goto bad; default_encoding_c = PyBytes_AS_STRING(default_encoding); __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c)); strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c); Py_DECREF(sys); Py_DECREF(default_encoding); return 0; bad: Py_XDECREF(sys); Py_XDECREF(default_encoding); return -1; } #endif #endif #ifdef __GNUC__ /* Test for GCC > 2.95 */ #if __GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)) #define likely(x) __builtin_expect(!!(x), 1) #define unlikely(x) __builtin_expect(!!(x), 0) #else /* __GNUC__ > 2 ... */ #define likely(x) (x) #define unlikely(x) (x) #endif /* __GNUC__ > 2 ... */ #else /* __GNUC__ */ #define likely(x) (x) #define unlikely(x) (x) #endif /* __GNUC__ */ static PyObject *__pyx_m; static PyObject *__pyx_d; static PyObject *__pyx_b; static PyObject *__pyx_empty_tuple; static PyObject *__pyx_empty_bytes; static int __pyx_lineno; static int __pyx_clineno = 0; static const char * __pyx_cfilenm= __FILE__; static const char *__pyx_filename; #if !defined(CYTHON_CCOMPLEX) #if defined(__cplusplus) #define CYTHON_CCOMPLEX 1 #elif defined(_Complex_I) #define CYTHON_CCOMPLEX 1 #else #define CYTHON_CCOMPLEX 0 #endif #endif #if CYTHON_CCOMPLEX #ifdef __cplusplus #include #else #include #endif #endif #if CYTHON_CCOMPLEX && !defined(__cplusplus) && defined(__sun__) && defined(__GNUC__) #undef _Complex_I #define _Complex_I 1.0fj #endif static const char *__pyx_f[] = { "_query_disc.pyx", "_common.pxd", "__init__.pxd", "type.pxd", }; #define IS_UNSIGNED(type) (((type) -1) > 0) struct __Pyx_StructField_; #define __PYX_BUF_FLAGS_PACKED_STRUCT (1 << 0) typedef struct { const char* name; /* for error messages only */ struct __Pyx_StructField_* fields; size_t size; /* sizeof(type) */ size_t arraysize[8]; /* length of array in each dimension */ int ndim; char typegroup; /* _R_eal, _C_omplex, Signed _I_nt, _U_nsigned int, _S_truct, _P_ointer, _O_bject, c_H_ar */ char is_unsigned; int flags; } __Pyx_TypeInfo; typedef struct __Pyx_StructField_ { __Pyx_TypeInfo* type; const char* name; size_t offset; } __Pyx_StructField; typedef struct { __Pyx_StructField* field; size_t parent_offset; } __Pyx_BufFmt_StackElem; typedef struct { __Pyx_StructField root; __Pyx_BufFmt_StackElem* head; size_t fmt_offset; size_t new_count, enc_count; size_t struct_alignment; int is_complex; char enc_type; char new_packmode; char enc_packmode; char is_valid_array; } __Pyx_BufFmt_Context; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":723 * # in Cython to enable them only on the right systems. * * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<< * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t */ typedef npy_int8 __pyx_t_5numpy_int8_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":724 * * ctypedef npy_int8 int8_t * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<< * ctypedef npy_int32 int32_t * ctypedef npy_int64 int64_t */ typedef npy_int16 __pyx_t_5numpy_int16_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":725 * ctypedef npy_int8 int8_t * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<< * ctypedef npy_int64 int64_t * #ctypedef npy_int96 int96_t */ typedef npy_int32 __pyx_t_5numpy_int32_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":726 * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<< * #ctypedef npy_int96 int96_t * #ctypedef npy_int128 int128_t */ typedef npy_int64 __pyx_t_5numpy_int64_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":730 * #ctypedef npy_int128 int128_t * * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<< * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t */ typedef npy_uint8 __pyx_t_5numpy_uint8_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":731 * * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<< * ctypedef npy_uint32 uint32_t * ctypedef npy_uint64 uint64_t */ typedef npy_uint16 __pyx_t_5numpy_uint16_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":732 * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<< * ctypedef npy_uint64 uint64_t * #ctypedef npy_uint96 uint96_t */ typedef npy_uint32 __pyx_t_5numpy_uint32_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":733 * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<< * #ctypedef npy_uint96 uint96_t * #ctypedef npy_uint128 uint128_t */ typedef npy_uint64 __pyx_t_5numpy_uint64_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":737 * #ctypedef npy_uint128 uint128_t * * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<< * ctypedef npy_float64 float64_t * #ctypedef npy_float80 float80_t */ typedef npy_float32 __pyx_t_5numpy_float32_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":738 * * ctypedef npy_float32 float32_t * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<< * #ctypedef npy_float80 float80_t * #ctypedef npy_float128 float128_t */ typedef npy_float64 __pyx_t_5numpy_float64_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":747 * # The int types are mapped a bit surprising -- * # numpy.int corresponds to 'l' and numpy.long to 'q' * ctypedef npy_long int_t # <<<<<<<<<<<<<< * ctypedef npy_longlong long_t * ctypedef npy_longlong longlong_t */ typedef npy_long __pyx_t_5numpy_int_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":748 * # numpy.int corresponds to 'l' and numpy.long to 'q' * ctypedef npy_long int_t * ctypedef npy_longlong long_t # <<<<<<<<<<<<<< * ctypedef npy_longlong longlong_t * */ typedef npy_longlong __pyx_t_5numpy_long_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":749 * ctypedef npy_long int_t * ctypedef npy_longlong long_t * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<< * * ctypedef npy_ulong uint_t */ typedef npy_longlong __pyx_t_5numpy_longlong_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":751 * ctypedef npy_longlong longlong_t * * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<< * ctypedef npy_ulonglong ulong_t * ctypedef npy_ulonglong ulonglong_t */ typedef npy_ulong __pyx_t_5numpy_uint_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":752 * * ctypedef npy_ulong uint_t * ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<< * ctypedef npy_ulonglong ulonglong_t * */ typedef npy_ulonglong __pyx_t_5numpy_ulong_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":753 * ctypedef npy_ulong uint_t * ctypedef npy_ulonglong ulong_t * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<< * * ctypedef npy_intp intp_t */ typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":755 * ctypedef npy_ulonglong ulonglong_t * * ctypedef npy_intp intp_t # <<<<<<<<<<<<<< * ctypedef npy_uintp uintp_t * */ typedef npy_intp __pyx_t_5numpy_intp_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":756 * * ctypedef npy_intp intp_t * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<< * * ctypedef npy_double float_t */ typedef npy_uintp __pyx_t_5numpy_uintp_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":758 * ctypedef npy_uintp uintp_t * * ctypedef npy_double float_t # <<<<<<<<<<<<<< * ctypedef npy_double double_t * ctypedef npy_longdouble longdouble_t */ typedef npy_double __pyx_t_5numpy_float_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":759 * * ctypedef npy_double float_t * ctypedef npy_double double_t # <<<<<<<<<<<<<< * ctypedef npy_longdouble longdouble_t * */ typedef npy_double __pyx_t_5numpy_double_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":760 * ctypedef npy_double float_t * ctypedef npy_double double_t * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<< * * ctypedef npy_cfloat cfloat_t */ typedef npy_longdouble __pyx_t_5numpy_longdouble_t; /* "_common.pxd":6 * from libcpp.vector cimport vector * * ctypedef unsigned size_t # <<<<<<<<<<<<<< * ctypedef size_t tsize * */ typedef unsigned int __pyx_t_7_common_size_t; /* "_common.pxd":7 * * ctypedef unsigned size_t * ctypedef size_t tsize # <<<<<<<<<<<<<< * * cdef extern from "stddef.h": */ typedef size_t __pyx_t_7_common_tsize; /* "_common.pxd":11 * cdef extern from "stddef.h": * ctypedef long ptrdiff_t * ctypedef ptrdiff_t tdiff # <<<<<<<<<<<<<< * * cdef extern from "datatypes.h": */ typedef ptrdiff_t __pyx_t_7_common_tdiff; #if CYTHON_CCOMPLEX #ifdef __cplusplus typedef ::std::complex< float > __pyx_t_float_complex; #else typedef float _Complex __pyx_t_float_complex; #endif #else typedef struct { float real, imag; } __pyx_t_float_complex; #endif #if CYTHON_CCOMPLEX #ifdef __cplusplus typedef ::std::complex< double > __pyx_t_double_complex; #else typedef double _Complex __pyx_t_double_complex; #endif #else typedef struct { double real, imag; } __pyx_t_double_complex; #endif /*--- Type declarations ---*/ /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":762 * ctypedef npy_longdouble longdouble_t * * ctypedef npy_cfloat cfloat_t # <<<<<<<<<<<<<< * ctypedef npy_cdouble cdouble_t * ctypedef npy_clongdouble clongdouble_t */ typedef npy_cfloat __pyx_t_5numpy_cfloat_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":763 * * ctypedef npy_cfloat cfloat_t * ctypedef npy_cdouble cdouble_t # <<<<<<<<<<<<<< * ctypedef npy_clongdouble clongdouble_t * */ typedef npy_cdouble __pyx_t_5numpy_cdouble_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":764 * ctypedef npy_cfloat cfloat_t * ctypedef npy_cdouble cdouble_t * ctypedef npy_clongdouble clongdouble_t # <<<<<<<<<<<<<< * * ctypedef npy_cdouble complex_t */ typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":766 * ctypedef npy_clongdouble clongdouble_t * * ctypedef npy_cdouble complex_t # <<<<<<<<<<<<<< * * cdef inline object PyArray_MultiIterNew1(a): */ typedef npy_cdouble __pyx_t_5numpy_complex_t; struct __pyx_opt_args_6healpy_11_query_disc_pixset_to_array; /* "healpy/src/_query_disc.pyx":320 * @cython.boundscheck(False) * @cython.wraparound(False) * cdef pixset_to_array(rangeset[int64] &pixset, buff=None): # <<<<<<<<<<<<<< * cdef int64 i, n * n = pixset.nval() */ struct __pyx_opt_args_6healpy_11_query_disc_pixset_to_array { int __pyx_n; 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static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index); static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void); typedef struct { Py_ssize_t shape, strides, suboffsets; } __Pyx_Buf_DimInfo; typedef struct { size_t refcount; Py_buffer pybuffer; } __Pyx_Buffer; typedef struct { __Pyx_Buffer *rcbuffer; char *data; __Pyx_Buf_DimInfo diminfo[8]; } __Pyx_LocalBuf_ND; #if PY_MAJOR_VERSION < 3 static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags); static void __Pyx_ReleaseBuffer(Py_buffer *view); #else #define __Pyx_GetBuffer PyObject_GetBuffer #define __Pyx_ReleaseBuffer PyBuffer_Release #endif static Py_ssize_t __Pyx_zeros[] = {0, 0, 0, 0, 0, 0, 0, 0}; static Py_ssize_t __Pyx_minusones[] = {-1, -1, -1, -1, -1, -1, -1, -1}; static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); /*proto*/ static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); static CYTHON_INLINE int64 __Pyx_PyInt_As_int64(PyObject *); static CYTHON_INLINE size_t __Pyx_PyInt_As_size_t(PyObject *); static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int64(int64 value); #if CYTHON_CCOMPLEX #ifdef __cplusplus #define __Pyx_CREAL(z) ((z).real()) #define __Pyx_CIMAG(z) ((z).imag()) #else #define __Pyx_CREAL(z) (__real__(z)) #define __Pyx_CIMAG(z) (__imag__(z)) #endif #else #define __Pyx_CREAL(z) ((z).real) #define __Pyx_CIMAG(z) ((z).imag) #endif #if (defined(_WIN32) || defined(__clang__)) && defined(__cplusplus) && CYTHON_CCOMPLEX #define __Pyx_SET_CREAL(z,x) ((z).real(x)) #define __Pyx_SET_CIMAG(z,y) ((z).imag(y)) #else #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x) #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y) #endif static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float, float); #if CYTHON_CCOMPLEX #define __Pyx_c_eqf(a, b) ((a)==(b)) #define __Pyx_c_sumf(a, b) ((a)+(b)) #define __Pyx_c_difff(a, b) ((a)-(b)) #define __Pyx_c_prodf(a, b) ((a)*(b)) #define __Pyx_c_quotf(a, b) ((a)/(b)) #define __Pyx_c_negf(a) (-(a)) #ifdef __cplusplus #define __Pyx_c_is_zerof(z) ((z)==(float)0) #define __Pyx_c_conjf(z) (::std::conj(z)) #if 1 #define __Pyx_c_absf(z) (::std::abs(z)) #define __Pyx_c_powf(a, b) (::std::pow(a, b)) #endif #else #define __Pyx_c_is_zerof(z) ((z)==0) #define __Pyx_c_conjf(z) (conjf(z)) #if 1 #define __Pyx_c_absf(z) (cabsf(z)) #define __Pyx_c_powf(a, b) (cpowf(a, b)) #endif #endif #else static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex); static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex); #if 1 static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex, __pyx_t_float_complex); #endif #endif static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double, double); #if CYTHON_CCOMPLEX #define __Pyx_c_eq(a, b) ((a)==(b)) #define __Pyx_c_sum(a, b) ((a)+(b)) #define __Pyx_c_diff(a, b) ((a)-(b)) #define __Pyx_c_prod(a, b) ((a)*(b)) #define __Pyx_c_quot(a, b) ((a)/(b)) #define __Pyx_c_neg(a) (-(a)) #ifdef __cplusplus #define __Pyx_c_is_zero(z) ((z)==(double)0) #define __Pyx_c_conj(z) (::std::conj(z)) #if 1 #define __Pyx_c_abs(z) (::std::abs(z)) #define __Pyx_c_pow(a, b) (::std::pow(a, b)) #endif #else #define __Pyx_c_is_zero(z) ((z)==0) #define __Pyx_c_conj(z) (conj(z)) #if 1 #define __Pyx_c_abs(z) (cabs(z)) #define __Pyx_c_pow(a, b) (cpow(a, b)) #endif #endif #else static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex); static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex); #if 1 static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex, __pyx_t_double_complex); #endif #endif static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value); static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); static int __Pyx_check_binary_version(void); #if !defined(__Pyx_PyIdentifier_FromString) #if PY_MAJOR_VERSION < 3 #define __Pyx_PyIdentifier_FromString(s) PyString_FromString(s) #else #define __Pyx_PyIdentifier_FromString(s) PyUnicode_FromString(s) #endif #endif static PyObject *__Pyx_ImportModule(const char *name); /*proto*/ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict); /*proto*/ typedef struct { int code_line; PyCodeObject* code_object; } __Pyx_CodeObjectCacheEntry; struct __Pyx_CodeObjectCache { int count; int max_count; __Pyx_CodeObjectCacheEntry* entries; }; static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL}; static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line); static PyCodeObject *__pyx_find_code_object(int code_line); static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object); static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename); /*proto*/ static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); /*proto*/ /* Module declarations from 'cpython.buffer' */ /* Module declarations from 'cpython.ref' */ /* Module declarations from 'libc.string' */ /* Module declarations from 'libc.stdio' */ /* Module declarations from 'cpython.object' */ /* Module declarations from '__builtin__' */ /* Module declarations from 'cpython.type' */ static PyTypeObject *__pyx_ptype_7cpython_4type_type = 0; /* Module declarations from 'libc.stdlib' */ /* Module declarations from 'numpy' */ /* Module declarations from 'numpy' */ static PyTypeObject *__pyx_ptype_5numpy_dtype = 0; static PyTypeObject *__pyx_ptype_5numpy_flatiter = 0; static PyTypeObject *__pyx_ptype_5numpy_broadcast = 0; static PyTypeObject *__pyx_ptype_5numpy_ndarray = 0; static PyTypeObject *__pyx_ptype_5numpy_ufunc = 0; static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, char *, char *, int *); /*proto*/ /* Module declarations from 'libcpp' */ /* Module declarations from 'libcpp.vector' */ /* Module declarations from 'cython' */ /* Module declarations from '_common' */ /* Module declarations from 'healpy._query_disc' */ static PyObject *__pyx_f_6healpy_11_query_disc_pixset_to_array(rangeset &, struct __pyx_opt_args_6healpy_11_query_disc_pixset_to_array *__pyx_optional_args); /*proto*/ static bool __pyx_f_6healpy_11_query_disc_isnsideok(int); /*proto*/ static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_5numpy_int64_t = { "int64_t", NULL, sizeof(__pyx_t_5numpy_int64_t), { 0 }, 0, IS_UNSIGNED(__pyx_t_5numpy_int64_t) ? 'U' : 'I', IS_UNSIGNED(__pyx_t_5numpy_int64_t), 0 }; static __Pyx_TypeInfo __Pyx_TypeInfo_double = { "double", NULL, sizeof(double), { 0 }, 0, 'R', 0, 0 }; static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_5numpy_float64_t = { "float64_t", NULL, sizeof(__pyx_t_5numpy_float64_t), { 0 }, 0, 'R', 0, 0 }; static __Pyx_TypeInfo __Pyx_TypeInfo___pyx_t_double_complex = { "double complex", NULL, sizeof(__pyx_t_double_complex), { 0 }, 0, 'C', 0, 0 }; #define __Pyx_MODULE_NAME "healpy._query_disc" int __pyx_module_is_main_healpy___query_disc = 0; /* Implementation of 'healpy._query_disc' */ static PyObject *__pyx_builtin_ValueError; static PyObject *__pyx_builtin_range; static PyObject *__pyx_builtin_RuntimeError; static PyObject *__pyx_pf_6healpy_11_query_disc_query_disc(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_nside, PyObject *__pyx_v_vec, PyObject *__pyx_v_radius, PyObject *__pyx_v_inclusive, PyObject *__pyx_v_fact, PyObject *__pyx_v_nest, PyArrayObject *__pyx_v_buff); /* proto */ static PyObject *__pyx_pf_6healpy_11_query_disc_2query_polygon(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_nside, PyObject *__pyx_v_vertices, PyObject *__pyx_v_inclusive, PyObject *__pyx_v_fact, PyObject *__pyx_v_nest, PyArrayObject *__pyx_v_buff); /* proto */ static PyObject *__pyx_pf_6healpy_11_query_disc_4query_strip(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_nside, PyObject *__pyx_v_theta1, PyObject *__pyx_v_theta2, PyObject *__pyx_v_inclusive, PyObject *__pyx_v_nest, PyArrayObject *__pyx_v_buff); /* proto */ static PyObject *__pyx_pf_6healpy_11_query_disc_6_boundaries_single(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_nside, PyObject *__pyx_v_pix, PyObject *__pyx_v_step, PyObject *__pyx_v_nest); /* proto */ static PyObject *__pyx_pf_6healpy_11_query_disc_8_boundaries_multiple(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_nside, PyObject *__pyx_v_pix, PyObject *__pyx_v_step, PyObject *__pyx_v_nest); /* proto */ static PyObject *__pyx_pf_6healpy_11_query_disc_10boundaries(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_nside, PyObject *__pyx_v_pix, PyObject *__pyx_v_step, PyObject *__pyx_v_nest); /* proto */ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ static char __pyx_k_B[] = "B"; static char __pyx_k_H[] = "H"; static char __pyx_k_I[] = "I"; static char __pyx_k_L[] = "L"; static char __pyx_k_O[] = "O"; static char __pyx_k_Q[] = "Q"; static char __pyx_k_b[] = "b"; static char __pyx_k_d[] = "d"; static char __pyx_k_f[] = "f"; static char __pyx_k_g[] = "g"; static char __pyx_k_h[] = "h"; static char __pyx_k_i[] = "i"; static char __pyx_k_j[] = "j"; static char __pyx_k_l[] = "l"; static char __pyx_k_n[] = "n"; static char __pyx_k_q[] = "q"; static char __pyx_k_v[] = "v"; static char __pyx_k_Zd[] = "Zd"; static char __pyx_k_Zf[] = "Zf"; static char __pyx_k_Zg[] = "Zg"; static char __pyx_k_hb[] = "hb"; static char __pyx_k_np[] = "np"; static char __pyx_k_out[] = "out"; static char __pyx_k_pix[] = "pix"; static char __pyx_k_ptg[] = "ptg"; static char __pyx_k_vec[] = "vec"; static char __pyx_k_buff[] = "buff"; static char __pyx_k_fact[] = "fact"; static char __pyx_k_main[] = "__main__"; static char __pyx_k_ndim[] = "ndim"; static char __pyx_k_nest[] = "nest"; static char __pyx_k_npix[] = "npix"; static char __pyx_k_size[] = "size"; static char __pyx_k_step[] = "step"; static char __pyx_k_test[] = "__test__"; static char __pyx_k_type[] = "type"; static char __pyx_k_vert[] = "vert"; static char __pyx_k_dtype[] = "dtype"; static char __pyx_k_empty[] = "empty"; static char __pyx_k_float[] = "float"; static char __pyx_k_int64[] = "int64"; static char __pyx_k_nside[] = "nside"; static char __pyx_k_numpy[] = "numpy"; static char __pyx_k_range[] = "range"; static char __pyx_k_bounds[] = "bounds"; static char __pyx_k_factor[] = "factor"; static char __pyx_k_import[] = "__import__"; static char __pyx_k_pixset[] = "pixset"; static char __pyx_k_radius[] = "radius"; static char __pyx_k_scheme[] = "scheme"; static char __pyx_k_theta1[] = "theta1"; static char __pyx_k_theta2[] = "theta2"; static char __pyx_k_integer[] = "integer"; static char __pyx_k_maxnpix[] = "maxnpix"; static char __pyx_k_vertices[] = "vertices"; static char __pyx_k_inclusive[] = "inclusive"; static char __pyx_k_ValueError[] = "ValueError"; static char __pyx_k_boundaries[] = "boundaries"; static char __pyx_k_query_disc[] = "query_disc"; static char __pyx_k_query_strip[] = "query_strip"; static char __pyx_k_RuntimeError[] = "RuntimeError"; static char __pyx_k_pyx_getbuffer[] = "__pyx_getbuffer"; static char __pyx_k_query_polygon[] = "query_polygon"; static char __pyx_k_boundaries_single[] = "_boundaries_single"; static char __pyx_k_pyx_releasebuffer[] = "__pyx_releasebuffer"; static char __pyx_k_healpy__query_disc[] = "healpy._query_disc"; static char __pyx_k_boundaries_line_236[] = "boundaries (line 236)"; static char __pyx_k_boundaries_multiple[] = "_boundaries_multiple"; static char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous"; static char __pyx_k_Array_has_to_one_dimensional[] = "Array has to one dimensional"; static char __pyx_k_Pixel_identifier_is_too_large[] = "Pixel identifier is too large"; static char __pyx_k_home_zonca_p_software_healpy_he[] = "/home/zonca/p/software/healpy/healpy/src/_query_disc.pyx"; static char __pyx_k_unknown_dtype_code_in_numpy_pxd[] = "unknown dtype code in numpy.pxd (%d)"; static char __pyx_k_Array_of_pixels_has_to_be_intege[] = "Array of pixels has to be integers"; static char __pyx_k_Buffer_too_small_to_contain_retu[] = "Buffer too small to contain return value"; static char __pyx_k_Format_string_allocated_too_shor[] = "Format string allocated too short, see comment in numpy.pxd"; static char __pyx_k_Non_native_byte_order_not_suppor[] = "Non-native byte order not supported"; static char __pyx_k_Returns_an_array_containing_vect[] = "Returns an array containing vectors to the boundary of\n the nominated pixel.\n\n The returned array has shape (3, 4*step), the elements of\n which are the x,y,z positions on the unit sphere of the\n pixel boundary. In order to get vector positions for just\n the corners, specify step=1.\n\n Parameters\n ----------\n nside : int\n The nside of the Healpix map.\n pix : int\n Pixel identifier\n step : int, optional\n Number of elements for each side of the pixel.\n nest : bool, optional\n if True, assume NESTED pixel ordering, otherwise, RING pixel ordering\n\n Returns\n -------\n boundary : float, array\n x,y,z for positions on the boundary of the pixel\n\n Example\n -------\n # Get corners of HEALPixel 5 in nside=2, RINGS ordering.\n\n >>> import healpy as hp\n >>> import numpy as np\n >>> nside = 2\n >>> corners = hp.boundaries(nside, 5)\n\n # Now convert to phi,theta representation:\n >>> phi_theta = hp.vec2ang(np.transpose(corners))\n\n >>> corners = hp.boundaries(nside, np.array([5,5]))\n\n # doctest moved to test_query_disc.py\n "; static char __pyx_k_Wrong_nside_value_must_be_a_powe[] = "Wrong nside value, must be a power of 2"; static char __pyx_k_fact_must_be_a_power_of_2_when_n[] = "fact must be a power of 2 when nest is True (fact=%d)"; static char __pyx_k_ndarray_is_not_Fortran_contiguou[] = "ndarray is not Fortran contiguous"; static char __pyx_k_Format_string_allocated_too_shor_2[] = "Format string allocated too short."; static PyObject *__pyx_kp_s_Array_has_to_one_dimensional; static PyObject *__pyx_kp_s_Array_of_pixels_has_to_be_intege; static PyObject *__pyx_kp_s_Buffer_too_small_to_contain_retu; static PyObject *__pyx_kp_u_Format_string_allocated_too_shor; static PyObject *__pyx_kp_u_Format_string_allocated_too_shor_2; static PyObject *__pyx_kp_u_Non_native_byte_order_not_suppor; static PyObject *__pyx_kp_s_Pixel_identifier_is_too_large; static PyObject *__pyx_kp_u_Returns_an_array_containing_vect; static PyObject *__pyx_n_s_RuntimeError; static PyObject *__pyx_n_s_ValueError; static PyObject *__pyx_kp_s_Wrong_nside_value_must_be_a_powe; static PyObject *__pyx_n_s_boundaries; static PyObject *__pyx_kp_u_boundaries_line_236; static PyObject *__pyx_n_s_boundaries_multiple; static PyObject *__pyx_n_s_boundaries_single; static PyObject *__pyx_n_s_bounds; static PyObject *__pyx_n_s_buff; static PyObject *__pyx_n_s_dtype; static PyObject *__pyx_n_s_empty; static PyObject *__pyx_n_s_fact; static PyObject *__pyx_kp_s_fact_must_be_a_power_of_2_when_n; static PyObject *__pyx_n_s_factor; static PyObject *__pyx_n_s_float; static PyObject *__pyx_n_s_hb; static PyObject *__pyx_n_s_healpy__query_disc; static PyObject *__pyx_kp_s_home_zonca_p_software_healpy_he; static PyObject *__pyx_n_s_i; static PyObject *__pyx_n_s_import; static PyObject *__pyx_n_s_inclusive; static PyObject *__pyx_n_s_int64; static PyObject *__pyx_n_s_integer; static PyObject *__pyx_n_s_j; static PyObject *__pyx_n_s_main; static PyObject *__pyx_n_s_maxnpix; static PyObject *__pyx_n_s_n; static PyObject *__pyx_kp_u_ndarray_is_not_C_contiguous; static PyObject *__pyx_kp_u_ndarray_is_not_Fortran_contiguou; static PyObject *__pyx_n_s_ndim; static PyObject *__pyx_n_s_nest; static PyObject *__pyx_n_s_np; static PyObject *__pyx_n_s_npix; static PyObject *__pyx_n_s_nside; static PyObject *__pyx_n_s_numpy; static PyObject *__pyx_n_s_out; static PyObject *__pyx_n_s_pix; static PyObject *__pyx_n_s_pixset; static PyObject *__pyx_n_s_ptg; static PyObject *__pyx_n_s_pyx_getbuffer; static PyObject *__pyx_n_s_pyx_releasebuffer; static PyObject *__pyx_n_s_query_disc; static PyObject *__pyx_n_s_query_polygon; static PyObject *__pyx_n_s_query_strip; static PyObject *__pyx_n_s_radius; static PyObject *__pyx_n_s_range; static PyObject *__pyx_n_s_scheme; static PyObject *__pyx_n_s_size; static PyObject *__pyx_n_s_step; static PyObject *__pyx_n_s_test; static PyObject *__pyx_n_s_theta1; static PyObject *__pyx_n_s_theta2; static PyObject *__pyx_n_s_type; static PyObject *__pyx_kp_u_unknown_dtype_code_in_numpy_pxd; static PyObject *__pyx_n_s_v; static PyObject *__pyx_n_s_vec; static PyObject *__pyx_n_s_vert; static PyObject *__pyx_n_s_vertices; static PyObject *__pyx_int_1; static PyObject *__pyx_int_3; static PyObject *__pyx_int_4; static PyObject *__pyx_int_12; static PyObject *__pyx_tuple_; static PyObject *__pyx_tuple__2; static PyObject *__pyx_tuple__3; static PyObject *__pyx_tuple__4; static PyObject *__pyx_tuple__5; static PyObject *__pyx_tuple__6; static PyObject *__pyx_tuple__7; static PyObject *__pyx_tuple__8; static PyObject *__pyx_tuple__9; static PyObject *__pyx_tuple__10; static PyObject *__pyx_tuple__11; static PyObject *__pyx_tuple__12; static PyObject *__pyx_tuple__13; static PyObject *__pyx_tuple__14; static PyObject *__pyx_tuple__15; static PyObject *__pyx_tuple__16; static PyObject *__pyx_tuple__18; static PyObject *__pyx_tuple__20; static PyObject *__pyx_tuple__22; static PyObject *__pyx_tuple__24; static PyObject *__pyx_tuple__26; static PyObject *__pyx_codeobj__17; static PyObject *__pyx_codeobj__19; static PyObject *__pyx_codeobj__21; static PyObject *__pyx_codeobj__23; static PyObject *__pyx_codeobj__25; static PyObject *__pyx_codeobj__27; /* "healpy/src/_query_disc.pyx":13 * @cython.boundscheck(False) * @cython.wraparound(False) * def query_disc(nside, vec, radius, inclusive = False, fact = 4, nest = False, np.ndarray[np.int64_t, ndim=1] buff=None): # <<<<<<<<<<<<<< * """Returns pixels whose centers lie within the disk defined by * *vec* and *radius* (in radians) (if *inclusive* is False), or which */ /* Python wrapper */ static PyObject *__pyx_pw_6healpy_11_query_disc_1query_disc(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ static char __pyx_doc_6healpy_11_query_disc_query_disc[] = "Returns pixels whose centers lie within the disk defined by\n *vec* and *radius* (in radians) (if *inclusive* is False), or which\n overlap with this disk (if *inclusive* is True).\n\n Parameters\n ----------\n nside : int\n The nside of the Healpix map.\n vec : float, sequence of 3 elements\n The coordinates of unit vector defining the disk center.\n radius : float\n The radius (in radians) of the disk\n inclusive : bool, optional\n If False, return the exact set of pixels whose pixel centers lie \n within the disk; if True, return all pixels that overlap with the disk,\n and maybe a few more. Default: False\n fact : int, optional\n Only used when inclusive=True. The overlapping test will be done at\n the resolution fact*nside. For NESTED ordering, fact must be a power of 2,\n else it can be any positive integer. Default: 4.\n nest: bool, optional\n if True, assume NESTED pixel ordering, otherwise, RING pixel ordering\n buff: int array, optional\n if provided, this numpy array is used to contain the return values and must be\n at least long enough to do so\n\n Returns\n -------\n ipix : int, array\n The pixels which lie within the given disk.\n\n Note\n ----\n This method is more efficient in the RING scheme.\n For inclusive=True, the algorithm may return some pixels which don't overlap\n with the disk at all. 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(unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_GOTREF(__pyx_t_1); if (PyDict_SetItem(__pyx_t_1, __pyx_kp_u_boundaries_line_236, __pyx_kp_u_Returns_an_array_containing_vect) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} if (PyDict_SetItem(__pyx_d, __pyx_n_s_test, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":976 * arr.base = baseptr * * cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<< * if arr.base is NULL: * return None */ goto __pyx_L0; __pyx_L1_error:; __Pyx_XDECREF(__pyx_t_1); if (__pyx_m) { __Pyx_AddTraceback("init healpy._query_disc", __pyx_clineno, __pyx_lineno, __pyx_filename); Py_DECREF(__pyx_m); __pyx_m = 0; } else if (!PyErr_Occurred()) { PyErr_SetString(PyExc_ImportError, "init healpy._query_disc"); } __pyx_L0:; __Pyx_RefNannyFinishContext(); #if PY_MAJOR_VERSION < 3 return; #else return __pyx_m; #endif } /* Runtime support code */ #if CYTHON_REFNANNY static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname) { PyObject *m = NULL, *p = NULL; void *r = NULL; m = PyImport_ImportModule((char *)modname); if (!m) goto end; p = PyObject_GetAttrString(m, (char *)"RefNannyAPI"); if (!p) goto end; r = PyLong_AsVoidPtr(p); end: Py_XDECREF(p); Py_XDECREF(m); return (__Pyx_RefNannyAPIStruct *)r; } #endif /* CYTHON_REFNANNY */ static PyObject *__Pyx_GetBuiltinName(PyObject *name) { PyObject* result = __Pyx_PyObject_GetAttrStr(__pyx_b, name); if (unlikely(!result)) { PyErr_Format(PyExc_NameError, #if PY_MAJOR_VERSION >= 3 "name '%U' is not defined", name); #else "name '%.200s' is not defined", PyString_AS_STRING(name)); #endif } return result; } static void __Pyx_RaiseArgtupleInvalid( const char* func_name, int exact, Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found) { Py_ssize_t num_expected; const char *more_or_less; if (num_found < num_min) { num_expected = num_min; more_or_less = "at least"; } else { num_expected = num_max; more_or_less = "at most"; } if (exact) { more_or_less = "exactly"; } PyErr_Format(PyExc_TypeError, "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)", func_name, more_or_less, num_expected, (num_expected == 1) ? "" : "s", num_found); } static void __Pyx_RaiseDoubleKeywordsError( const char* func_name, PyObject* kw_name) { PyErr_Format(PyExc_TypeError, #if PY_MAJOR_VERSION >= 3 "%s() got multiple values for keyword argument '%U'", func_name, kw_name); #else "%s() got multiple values for keyword argument '%s'", func_name, PyString_AsString(kw_name)); #endif } static int __Pyx_ParseOptionalKeywords( PyObject *kwds, PyObject **argnames[], PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, const char* function_name) { PyObject *key = 0, *value = 0; Py_ssize_t pos = 0; PyObject*** name; PyObject*** first_kw_arg = argnames + num_pos_args; while (PyDict_Next(kwds, &pos, &key, &value)) { name = first_kw_arg; while (*name && (**name != key)) name++; if (*name) { values[name-argnames] = value; continue; } name = first_kw_arg; #if PY_MAJOR_VERSION < 3 if (likely(PyString_CheckExact(key)) || likely(PyString_Check(key))) { while (*name) { if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key)) && _PyString_Eq(**name, key)) { values[name-argnames] = value; break; } name++; } if (*name) continue; else { PyObject*** argname = argnames; while (argname != first_kw_arg) { if ((**argname == key) || ( (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key)) && _PyString_Eq(**argname, key))) { goto arg_passed_twice; } argname++; } } } else #endif if (likely(PyUnicode_Check(key))) { while (*name) { int cmp = (**name == key) ? 0 : #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : #endif PyUnicode_Compare(**name, key); if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; if (cmp == 0) { values[name-argnames] = value; break; } name++; } if (*name) continue; else { PyObject*** argname = argnames; while (argname != first_kw_arg) { int cmp = (**argname == key) ? 0 : #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : #endif PyUnicode_Compare(**argname, key); if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; if (cmp == 0) goto arg_passed_twice; argname++; } } } else goto invalid_keyword_type; if (kwds2) { if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad; } else { goto invalid_keyword; } } return 0; arg_passed_twice: __Pyx_RaiseDoubleKeywordsError(function_name, key); goto bad; invalid_keyword_type: PyErr_Format(PyExc_TypeError, "%.200s() keywords must be strings", function_name); goto bad; invalid_keyword: PyErr_Format(PyExc_TypeError, #if PY_MAJOR_VERSION < 3 "%.200s() got an unexpected keyword argument '%.200s'", function_name, PyString_AsString(key)); #else "%s() got an unexpected keyword argument '%U'", function_name, key); #endif bad: return -1; } static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) { PyErr_Format(PyExc_TypeError, "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)", name, type->tp_name, Py_TYPE(obj)->tp_name); } static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, const char *name, int exact) { if (unlikely(!type)) { PyErr_SetString(PyExc_SystemError, "Missing type object"); return 0; } if (none_allowed && obj == Py_None) return 1; else if (exact) { if (likely(Py_TYPE(obj) == type)) return 1; #if PY_MAJOR_VERSION == 2 else if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1; #endif } else { if (likely(PyObject_TypeCheck(obj, type))) return 1; } __Pyx_RaiseArgumentTypeInvalid(name, obj, type); return 0; } static CYTHON_INLINE int __Pyx_IsLittleEndian(void) { unsigned int n = 1; return *(unsigned char*)(&n) != 0; } static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, __Pyx_BufFmt_StackElem* stack, __Pyx_TypeInfo* type) { stack[0].field = &ctx->root; stack[0].parent_offset = 0; ctx->root.type = type; ctx->root.name = "buffer dtype"; ctx->root.offset = 0; ctx->head = stack; ctx->head->field = &ctx->root; ctx->fmt_offset = 0; ctx->head->parent_offset = 0; ctx->new_packmode = '@'; ctx->enc_packmode = '@'; ctx->new_count = 1; ctx->enc_count = 0; ctx->enc_type = 0; ctx->is_complex = 0; ctx->is_valid_array = 0; ctx->struct_alignment = 0; while (type->typegroup == 'S') { ++ctx->head; ctx->head->field = type->fields; ctx->head->parent_offset = 0; type = type->fields->type; } } static int __Pyx_BufFmt_ParseNumber(const char** ts) { int count; const char* t = *ts; if (*t < '0' || *t > '9') { return -1; } else { count = *t++ - '0'; while (*t >= '0' && *t < '9') { count *= 10; count += *t++ - '0'; } } *ts = t; return count; } static int __Pyx_BufFmt_ExpectNumber(const char **ts) { int number = __Pyx_BufFmt_ParseNumber(ts); if (number == -1) /* First char was not a digit */ PyErr_Format(PyExc_ValueError,\ "Does not understand character buffer dtype format string ('%c')", **ts); return number; } static void __Pyx_BufFmt_RaiseUnexpectedChar(char ch) { PyErr_Format(PyExc_ValueError, "Unexpected format string character: '%c'", ch); } static const char* __Pyx_BufFmt_DescribeTypeChar(char ch, int is_complex) { switch (ch) { case 'c': return "'char'"; case 'b': return "'signed char'"; case 'B': return "'unsigned char'"; case 'h': return "'short'"; case 'H': return "'unsigned short'"; case 'i': return "'int'"; case 'I': return "'unsigned int'"; case 'l': return "'long'"; case 'L': return "'unsigned long'"; case 'q': return "'long long'"; case 'Q': return "'unsigned long long'"; case 'f': return (is_complex ? "'complex float'" : "'float'"); case 'd': return (is_complex ? "'complex double'" : "'double'"); case 'g': return (is_complex ? "'complex long double'" : "'long double'"); case 'T': return "a struct"; case 'O': return "Python object"; case 'P': return "a pointer"; case 's': case 'p': return "a string"; case 0: return "end"; default: return "unparseable format string"; } } static size_t __Pyx_BufFmt_TypeCharToStandardSize(char ch, int is_complex) { switch (ch) { case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; case 'h': case 'H': return 2; case 'i': case 'I': case 'l': case 'L': return 4; case 'q': case 'Q': return 8; case 'f': return (is_complex ? 8 : 4); case 'd': return (is_complex ? 16 : 8); case 'g': { PyErr_SetString(PyExc_ValueError, "Python does not define a standard format string size for long double ('g').."); return 0; } case 'O': case 'P': return sizeof(void*); default: __Pyx_BufFmt_RaiseUnexpectedChar(ch); return 0; } } static size_t __Pyx_BufFmt_TypeCharToNativeSize(char ch, int is_complex) { switch (ch) { case 'c': case 'b': case 'B': case 's': case 'p': return 1; case 'h': case 'H': return sizeof(short); case 'i': case 'I': return sizeof(int); case 'l': case 'L': return sizeof(long); #ifdef HAVE_LONG_LONG case 'q': case 'Q': return sizeof(PY_LONG_LONG); #endif case 'f': return sizeof(float) * (is_complex ? 2 : 1); case 'd': return sizeof(double) * (is_complex ? 2 : 1); case 'g': return sizeof(long double) * (is_complex ? 2 : 1); case 'O': case 'P': return sizeof(void*); default: { __Pyx_BufFmt_RaiseUnexpectedChar(ch); return 0; } } } typedef struct { char c; short x; } __Pyx_st_short; typedef struct { char c; int x; } __Pyx_st_int; typedef struct { char c; long x; } __Pyx_st_long; typedef struct { char c; float x; } __Pyx_st_float; typedef struct { char c; double x; } __Pyx_st_double; typedef struct { char c; long double x; } __Pyx_st_longdouble; typedef struct { char c; void *x; } __Pyx_st_void_p; #ifdef HAVE_LONG_LONG typedef struct { char c; PY_LONG_LONG x; } __Pyx_st_longlong; #endif static size_t __Pyx_BufFmt_TypeCharToAlignment(char ch, CYTHON_UNUSED int is_complex) { switch (ch) { case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; case 'h': case 'H': return sizeof(__Pyx_st_short) - sizeof(short); case 'i': case 'I': return sizeof(__Pyx_st_int) - sizeof(int); case 'l': case 'L': return sizeof(__Pyx_st_long) - sizeof(long); #ifdef HAVE_LONG_LONG case 'q': case 'Q': return sizeof(__Pyx_st_longlong) - sizeof(PY_LONG_LONG); #endif case 'f': return sizeof(__Pyx_st_float) - sizeof(float); case 'd': return sizeof(__Pyx_st_double) - sizeof(double); case 'g': return sizeof(__Pyx_st_longdouble) - sizeof(long double); case 'P': case 'O': return sizeof(__Pyx_st_void_p) - sizeof(void*); default: __Pyx_BufFmt_RaiseUnexpectedChar(ch); return 0; } } /* These are for computing the padding at the end of the struct to align on the first member of the struct. This will probably the same as above, but we don't have any guarantees. */ typedef struct { short x; char c; } __Pyx_pad_short; typedef struct { int x; char c; } __Pyx_pad_int; typedef struct { long x; char c; } __Pyx_pad_long; typedef struct { float x; char c; } __Pyx_pad_float; typedef struct { double x; char c; } __Pyx_pad_double; typedef struct { long double x; char c; } __Pyx_pad_longdouble; typedef struct { void *x; char c; } __Pyx_pad_void_p; #ifdef HAVE_LONG_LONG typedef struct { PY_LONG_LONG x; char c; } __Pyx_pad_longlong; #endif static size_t __Pyx_BufFmt_TypeCharToPadding(char ch, CYTHON_UNUSED int is_complex) { switch (ch) { case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; case 'h': case 'H': return sizeof(__Pyx_pad_short) - sizeof(short); case 'i': case 'I': return sizeof(__Pyx_pad_int) - sizeof(int); case 'l': case 'L': return sizeof(__Pyx_pad_long) - sizeof(long); #ifdef HAVE_LONG_LONG case 'q': case 'Q': return sizeof(__Pyx_pad_longlong) - sizeof(PY_LONG_LONG); #endif case 'f': return sizeof(__Pyx_pad_float) - sizeof(float); case 'd': return sizeof(__Pyx_pad_double) - sizeof(double); case 'g': return sizeof(__Pyx_pad_longdouble) - sizeof(long double); case 'P': case 'O': return sizeof(__Pyx_pad_void_p) - sizeof(void*); default: __Pyx_BufFmt_RaiseUnexpectedChar(ch); return 0; } } static char __Pyx_BufFmt_TypeCharToGroup(char ch, int is_complex) { switch (ch) { case 'c': return 'H'; case 'b': case 'h': case 'i': case 'l': case 'q': case 's': case 'p': return 'I'; case 'B': case 'H': case 'I': case 'L': case 'Q': return 'U'; case 'f': case 'd': case 'g': return (is_complex ? 'C' : 'R'); case 'O': return 'O'; case 'P': return 'P'; default: { __Pyx_BufFmt_RaiseUnexpectedChar(ch); return 0; } } } static void __Pyx_BufFmt_RaiseExpected(__Pyx_BufFmt_Context* ctx) { if (ctx->head == NULL || ctx->head->field == &ctx->root) { const char* expected; const char* quote; if (ctx->head == NULL) { expected = "end"; quote = ""; } else { expected = ctx->head->field->type->name; quote = "'"; } PyErr_Format(PyExc_ValueError, "Buffer dtype mismatch, expected %s%s%s but got %s", quote, expected, quote, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex)); } else { __Pyx_StructField* field = ctx->head->field; __Pyx_StructField* parent = (ctx->head - 1)->field; PyErr_Format(PyExc_ValueError, "Buffer dtype mismatch, expected '%s' but got %s in '%s.%s'", field->type->name, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex), parent->type->name, field->name); } } static int __Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context* ctx) { char group; size_t size, offset, arraysize = 1; if (ctx->enc_type == 0) return 0; if (ctx->head->field->type->arraysize[0]) { int i, ndim = 0; if (ctx->enc_type == 's' || ctx->enc_type == 'p') { ctx->is_valid_array = ctx->head->field->type->ndim == 1; ndim = 1; if (ctx->enc_count != ctx->head->field->type->arraysize[0]) { PyErr_Format(PyExc_ValueError, "Expected a dimension of size %zu, got %zu", ctx->head->field->type->arraysize[0], ctx->enc_count); return -1; } } if (!ctx->is_valid_array) { PyErr_Format(PyExc_ValueError, "Expected %d dimensions, got %d", ctx->head->field->type->ndim, ndim); return -1; } for (i = 0; i < ctx->head->field->type->ndim; i++) { arraysize *= ctx->head->field->type->arraysize[i]; } ctx->is_valid_array = 0; ctx->enc_count = 1; } group = __Pyx_BufFmt_TypeCharToGroup(ctx->enc_type, ctx->is_complex); do { __Pyx_StructField* field = ctx->head->field; __Pyx_TypeInfo* type = field->type; if (ctx->enc_packmode == '@' || ctx->enc_packmode == '^') { size = __Pyx_BufFmt_TypeCharToNativeSize(ctx->enc_type, ctx->is_complex); } else { size = __Pyx_BufFmt_TypeCharToStandardSize(ctx->enc_type, ctx->is_complex); } if (ctx->enc_packmode == '@') { size_t align_at = __Pyx_BufFmt_TypeCharToAlignment(ctx->enc_type, ctx->is_complex); size_t align_mod_offset; if (align_at == 0) return -1; align_mod_offset = ctx->fmt_offset % align_at; if (align_mod_offset > 0) ctx->fmt_offset += align_at - align_mod_offset; if (ctx->struct_alignment == 0) ctx->struct_alignment = __Pyx_BufFmt_TypeCharToPadding(ctx->enc_type, ctx->is_complex); } if (type->size != size || type->typegroup != group) { if (type->typegroup == 'C' && type->fields != NULL) { size_t parent_offset = ctx->head->parent_offset + field->offset; ++ctx->head; ctx->head->field = type->fields; ctx->head->parent_offset = parent_offset; continue; } if ((type->typegroup == 'H' || group == 'H') && type->size == size) { } else { __Pyx_BufFmt_RaiseExpected(ctx); return -1; } } offset = ctx->head->parent_offset + field->offset; if (ctx->fmt_offset != offset) { PyErr_Format(PyExc_ValueError, "Buffer dtype mismatch; next field is at offset %" CYTHON_FORMAT_SSIZE_T "d but %" CYTHON_FORMAT_SSIZE_T "d expected", (Py_ssize_t)ctx->fmt_offset, (Py_ssize_t)offset); return -1; } ctx->fmt_offset += size; if (arraysize) ctx->fmt_offset += (arraysize - 1) * size; --ctx->enc_count; /* Consume from buffer string */ while (1) { if (field == &ctx->root) { ctx->head = NULL; if (ctx->enc_count != 0) { __Pyx_BufFmt_RaiseExpected(ctx); return -1; } break; /* breaks both loops as ctx->enc_count == 0 */ } ctx->head->field = ++field; if (field->type == NULL) { --ctx->head; field = ctx->head->field; continue; } else if (field->type->typegroup == 'S') { size_t parent_offset = ctx->head->parent_offset + field->offset; if (field->type->fields->type == NULL) continue; /* empty struct */ field = field->type->fields; ++ctx->head; ctx->head->field = field; ctx->head->parent_offset = parent_offset; break; } else { break; } } } while (ctx->enc_count); ctx->enc_type = 0; ctx->is_complex = 0; return 0; } static CYTHON_INLINE PyObject * __pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp) { const char *ts = *tsp; int i = 0, number; int ndim = ctx->head->field->type->ndim; ; ++ts; if (ctx->new_count != 1) { PyErr_SetString(PyExc_ValueError, "Cannot handle repeated arrays in format string"); return NULL; } if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; while (*ts && *ts != ')') { switch (*ts) { case ' ': case '\f': case '\r': case '\n': case '\t': case '\v': continue; default: break; /* not a 'break' in the loop */ } number = __Pyx_BufFmt_ExpectNumber(&ts); if (number == -1) return NULL; if (i < ndim && (size_t) number != ctx->head->field->type->arraysize[i]) return PyErr_Format(PyExc_ValueError, "Expected a dimension of size %zu, got %d", ctx->head->field->type->arraysize[i], number); if (*ts != ',' && *ts != ')') return PyErr_Format(PyExc_ValueError, "Expected a comma in format string, got '%c'", *ts); if (*ts == ',') ts++; i++; } if (i != ndim) return PyErr_Format(PyExc_ValueError, "Expected %d dimension(s), got %d", ctx->head->field->type->ndim, i); if (!*ts) { PyErr_SetString(PyExc_ValueError, "Unexpected end of format string, expected ')'"); return NULL; } ctx->is_valid_array = 1; ctx->new_count = 1; *tsp = ++ts; return Py_None; } static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts) { int got_Z = 0; while (1) { switch(*ts) { case 0: if (ctx->enc_type != 0 && ctx->head == NULL) { __Pyx_BufFmt_RaiseExpected(ctx); return NULL; } if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; if (ctx->head != NULL) { __Pyx_BufFmt_RaiseExpected(ctx); return NULL; } return ts; case ' ': case 10: case 13: ++ts; break; case '<': if (!__Pyx_IsLittleEndian()) { PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler"); return NULL; } ctx->new_packmode = '='; ++ts; break; case '>': case '!': if (__Pyx_IsLittleEndian()) { PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler"); return NULL; } ctx->new_packmode = '='; ++ts; break; case '=': case '@': case '^': ctx->new_packmode = *ts++; break; case 'T': /* substruct */ { const char* ts_after_sub; size_t i, struct_count = ctx->new_count; size_t struct_alignment = ctx->struct_alignment; ctx->new_count = 1; ++ts; if (*ts != '{') { PyErr_SetString(PyExc_ValueError, "Buffer acquisition: Expected '{' after 'T'"); return NULL; } if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; ctx->enc_type = 0; /* Erase processed last struct element */ ctx->enc_count = 0; ctx->struct_alignment = 0; ++ts; ts_after_sub = ts; for (i = 0; i != struct_count; ++i) { ts_after_sub = __Pyx_BufFmt_CheckString(ctx, ts); if (!ts_after_sub) return NULL; } ts = ts_after_sub; if (struct_alignment) ctx->struct_alignment = struct_alignment; } break; case '}': /* end of substruct; either repeat or move on */ { size_t alignment = ctx->struct_alignment; ++ts; if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; ctx->enc_type = 0; /* Erase processed last struct element */ if (alignment && ctx->fmt_offset % alignment) { ctx->fmt_offset += alignment - (ctx->fmt_offset % alignment); } } return ts; case 'x': if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; ctx->fmt_offset += ctx->new_count; ctx->new_count = 1; ctx->enc_count = 0; ctx->enc_type = 0; ctx->enc_packmode = ctx->new_packmode; ++ts; break; case 'Z': got_Z = 1; ++ts; if (*ts != 'f' && *ts != 'd' && *ts != 'g') { __Pyx_BufFmt_RaiseUnexpectedChar('Z'); return NULL; } /* fall through */ case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I': case 'l': case 'L': case 'q': case 'Q': case 'f': case 'd': case 'g': case 'O': case 's': case 'p': if (ctx->enc_type == *ts && got_Z == ctx->is_complex && ctx->enc_packmode == ctx->new_packmode) { ctx->enc_count += ctx->new_count; } else { if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; ctx->enc_count = ctx->new_count; ctx->enc_packmode = ctx->new_packmode; ctx->enc_type = *ts; ctx->is_complex = got_Z; } ++ts; ctx->new_count = 1; got_Z = 0; break; case ':': ++ts; while(*ts != ':') ++ts; ++ts; break; case '(': if (!__pyx_buffmt_parse_array(ctx, &ts)) return NULL; break; default: { int number = __Pyx_BufFmt_ExpectNumber(&ts); if (number == -1) return NULL; ctx->new_count = (size_t)number; } } } } static CYTHON_INLINE void __Pyx_ZeroBuffer(Py_buffer* buf) { buf->buf = NULL; buf->obj = NULL; buf->strides = __Pyx_zeros; buf->shape = __Pyx_zeros; buf->suboffsets = __Pyx_minusones; } static CYTHON_INLINE int __Pyx_GetBufferAndValidate( Py_buffer* buf, PyObject* obj, __Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack) { if (obj == Py_None || obj == NULL) { __Pyx_ZeroBuffer(buf); return 0; } buf->buf = NULL; if (__Pyx_GetBuffer(obj, buf, flags) == -1) goto fail; if (buf->ndim != nd) { PyErr_Format(PyExc_ValueError, "Buffer has wrong number of dimensions (expected %d, got %d)", nd, buf->ndim); goto fail; } if (!cast) { __Pyx_BufFmt_Context ctx; __Pyx_BufFmt_Init(&ctx, stack, dtype); if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail; } if ((unsigned)buf->itemsize != dtype->size) { PyErr_Format(PyExc_ValueError, "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "d byte%s) does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "d byte%s)", buf->itemsize, (buf->itemsize > 1) ? "s" : "", dtype->name, (Py_ssize_t)dtype->size, (dtype->size > 1) ? "s" : ""); goto fail; } if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones; return 0; fail:; __Pyx_ZeroBuffer(buf); return -1; } static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) { if (info->buf == NULL) return; if (info->suboffsets == __Pyx_minusones) info->suboffsets = NULL; __Pyx_ReleaseBuffer(info); } #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) { PyObject *result; ternaryfunc call = func->ob_type->tp_call; if (unlikely(!call)) return PyObject_Call(func, arg, kw); #if PY_VERSION_HEX >= 0x02060000 if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) return NULL; #endif result = (*call)(func, arg, kw); #if PY_VERSION_HEX >= 0x02060000 Py_LeaveRecursiveCall(); #endif if (unlikely(!result) && unlikely(!PyErr_Occurred())) { PyErr_SetString( PyExc_SystemError, "NULL result without error in PyObject_Call"); } return result; } #endif static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb) { #if CYTHON_COMPILING_IN_CPYTHON PyObject *tmp_type, *tmp_value, *tmp_tb; PyThreadState *tstate = PyThreadState_GET(); tmp_type = tstate->curexc_type; tmp_value = tstate->curexc_value; tmp_tb = tstate->curexc_traceback; tstate->curexc_type = type; tstate->curexc_value = value; tstate->curexc_traceback = tb; Py_XDECREF(tmp_type); Py_XDECREF(tmp_value); Py_XDECREF(tmp_tb); #else PyErr_Restore(type, value, tb); #endif } static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb) { #if CYTHON_COMPILING_IN_CPYTHON PyThreadState *tstate = PyThreadState_GET(); *type = tstate->curexc_type; *value = tstate->curexc_value; *tb = tstate->curexc_traceback; tstate->curexc_type = 0; tstate->curexc_value = 0; tstate->curexc_traceback = 0; #else PyErr_Fetch(type, value, tb); #endif } #if PY_MAJOR_VERSION < 3 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, CYTHON_UNUSED PyObject *cause) { Py_XINCREF(type); if (!value || value == Py_None) value = NULL; else Py_INCREF(value); if (!tb || tb == Py_None) tb = NULL; else { Py_INCREF(tb); if (!PyTraceBack_Check(tb)) { PyErr_SetString(PyExc_TypeError, "raise: arg 3 must be a traceback or None"); goto raise_error; } } #if PY_VERSION_HEX < 0x02050000 if (PyClass_Check(type)) { #else if (PyType_Check(type)) { #endif #if CYTHON_COMPILING_IN_PYPY if (!value) { Py_INCREF(Py_None); value = Py_None; } #endif PyErr_NormalizeException(&type, &value, &tb); } else { if (value) { PyErr_SetString(PyExc_TypeError, "instance exception may not have a separate value"); goto raise_error; } value = type; #if PY_VERSION_HEX < 0x02050000 if (PyInstance_Check(type)) { type = (PyObject*) ((PyInstanceObject*)type)->in_class; Py_INCREF(type); } else { type = 0; PyErr_SetString(PyExc_TypeError, "raise: exception must be an old-style class or instance"); goto raise_error; } #else type = (PyObject*) Py_TYPE(type); Py_INCREF(type); if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) { PyErr_SetString(PyExc_TypeError, "raise: exception class must be a subclass of BaseException"); goto raise_error; } #endif } __Pyx_ErrRestore(type, value, tb); return; raise_error: Py_XDECREF(value); Py_XDECREF(type); Py_XDECREF(tb); return; } #else /* Python 3+ */ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { PyObject* owned_instance = NULL; if (tb == Py_None) { tb = 0; } else if (tb && !PyTraceBack_Check(tb)) { PyErr_SetString(PyExc_TypeError, "raise: arg 3 must be a traceback or None"); goto bad; } if (value == Py_None) value = 0; if (PyExceptionInstance_Check(type)) { if (value) { PyErr_SetString(PyExc_TypeError, "instance exception may not have a separate value"); goto bad; } value = type; type = (PyObject*) Py_TYPE(value); } else if (PyExceptionClass_Check(type)) { PyObject *instance_class = NULL; if (value && PyExceptionInstance_Check(value)) { instance_class = (PyObject*) Py_TYPE(value); if (instance_class != type) { if (PyObject_IsSubclass(instance_class, type)) { type = instance_class; } else { instance_class = NULL; } } } if (!instance_class) { PyObject *args; if (!value) args = PyTuple_New(0); else if (PyTuple_Check(value)) { Py_INCREF(value); args = value; } else args = PyTuple_Pack(1, value); if (!args) goto bad; owned_instance = PyObject_Call(type, args, NULL); Py_DECREF(args); if (!owned_instance) goto bad; value = owned_instance; if (!PyExceptionInstance_Check(value)) { PyErr_Format(PyExc_TypeError, "calling %R should have returned an instance of " "BaseException, not %R", type, Py_TYPE(value)); goto bad; } } } else { PyErr_SetString(PyExc_TypeError, "raise: exception class must be a subclass of BaseException"); goto bad; } #if PY_VERSION_HEX >= 0x03030000 if (cause) { #else if (cause && cause != Py_None) { #endif PyObject *fixed_cause; if (cause == Py_None) { fixed_cause = NULL; } else if (PyExceptionClass_Check(cause)) { fixed_cause = PyObject_CallObject(cause, NULL); if (fixed_cause == NULL) goto bad; } else if (PyExceptionInstance_Check(cause)) { fixed_cause = cause; Py_INCREF(fixed_cause); } else { PyErr_SetString(PyExc_TypeError, "exception causes must derive from " "BaseException"); goto bad; } PyException_SetCause(value, fixed_cause); } PyErr_SetObject(type, value); if (tb) { PyThreadState *tstate = PyThreadState_GET(); PyObject* tmp_tb = tstate->curexc_traceback; if (tb != tmp_tb) { Py_INCREF(tb); tstate->curexc_traceback = tb; Py_XDECREF(tmp_tb); } } bad: Py_XDECREF(owned_instance); return; } #endif static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { PyObject *r; if (!j) return NULL; r = PyObject_GetItem(o, j); Py_DECREF(j); return r; } static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, int wraparound, int boundscheck) { #if CYTHON_COMPILING_IN_CPYTHON if (wraparound & unlikely(i < 0)) i += PyList_GET_SIZE(o); if ((!boundscheck) || likely((0 <= i) & (i < PyList_GET_SIZE(o)))) { PyObject *r = PyList_GET_ITEM(o, i); Py_INCREF(r); return r; } return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); #else return PySequence_GetItem(o, i); #endif } static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, int wraparound, int boundscheck) { #if CYTHON_COMPILING_IN_CPYTHON if (wraparound & unlikely(i < 0)) i += PyTuple_GET_SIZE(o); if ((!boundscheck) || likely((0 <= i) & (i < PyTuple_GET_SIZE(o)))) { PyObject *r = PyTuple_GET_ITEM(o, i); Py_INCREF(r); return r; } return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); #else return PySequence_GetItem(o, i); #endif } static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list, int wraparound, int boundscheck) { #if CYTHON_COMPILING_IN_CPYTHON if (is_list || PyList_CheckExact(o)) { Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o); if ((!boundscheck) || (likely((n >= 0) & (n < PyList_GET_SIZE(o))))) { PyObject *r = PyList_GET_ITEM(o, n); Py_INCREF(r); return r; } } else if (PyTuple_CheckExact(o)) { Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o); if ((!boundscheck) || likely((n >= 0) & (n < PyTuple_GET_SIZE(o)))) { PyObject *r = PyTuple_GET_ITEM(o, n); Py_INCREF(r); return r; } } else { PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence; if (likely(m && m->sq_item)) { if (wraparound && unlikely(i < 0) && likely(m->sq_length)) { Py_ssize_t l = m->sq_length(o); if (likely(l >= 0)) { i += l; } else { if (PyErr_ExceptionMatches(PyExc_OverflowError)) PyErr_Clear(); else return NULL; } } return m->sq_item(o, i); } } #else if (is_list || PySequence_Check(o)) { return PySequence_GetItem(o, i); } #endif return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); } static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) { PyObject *result; #if CYTHON_COMPILING_IN_CPYTHON result = PyDict_GetItem(__pyx_d, name); if (result) { Py_INCREF(result); } else { #else result = PyObject_GetItem(__pyx_d, name); if (!result) { PyErr_Clear(); #endif result = __Pyx_GetBuiltinName(name); } return result; } static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { if (unlikely(!type)) { PyErr_SetString(PyExc_SystemError, "Missing type object"); return 0; } if (likely(PyObject_TypeCheck(obj, type))) return 1; PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", Py_TYPE(obj)->tp_name, type->tp_name); return 0; } static void __Pyx_RaiseBufferIndexError(int axis) { PyErr_Format(PyExc_IndexError, "Out of bounds on buffer access (axis %d)", axis); } static void __Pyx_RaiseBufferFallbackError(void) { PyErr_SetString(PyExc_ValueError, "Buffer acquisition failed on assignment; and then reacquiring the old buffer failed too!"); } static CYTHON_INLINE PyObject* __Pyx_PyObject_GetSlice( PyObject* obj, Py_ssize_t cstart, Py_ssize_t cstop, PyObject** _py_start, PyObject** _py_stop, PyObject** _py_slice, int has_cstart, int has_cstop, CYTHON_UNUSED int wraparound) { #if CYTHON_COMPILING_IN_CPYTHON PyMappingMethods* mp; #if PY_MAJOR_VERSION < 3 PySequenceMethods* ms = Py_TYPE(obj)->tp_as_sequence; if (likely(ms && ms->sq_slice)) { if (!has_cstart) { if (_py_start && (*_py_start != Py_None)) { cstart = __Pyx_PyIndex_AsSsize_t(*_py_start); if ((cstart == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad; } else cstart = 0; } if (!has_cstop) { if (_py_stop && (*_py_stop != Py_None)) { cstop = __Pyx_PyIndex_AsSsize_t(*_py_stop); if ((cstop == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad; } else cstop = PY_SSIZE_T_MAX; } if (wraparound && unlikely((cstart < 0) | (cstop < 0)) && likely(ms->sq_length)) { Py_ssize_t l = ms->sq_length(obj); if (likely(l >= 0)) { if (cstop < 0) { cstop += l; if (cstop < 0) cstop = 0; } if (cstart < 0) { cstart += l; if (cstart < 0) cstart = 0; } } else { if (PyErr_ExceptionMatches(PyExc_OverflowError)) PyErr_Clear(); else goto bad; } } return ms->sq_slice(obj, cstart, cstop); } #endif mp = Py_TYPE(obj)->tp_as_mapping; if (likely(mp && mp->mp_subscript)) #endif { PyObject* result; PyObject *py_slice, *py_start, *py_stop; if (_py_slice) { py_slice = *_py_slice; } else { PyObject* owned_start = NULL; PyObject* owned_stop = NULL; if (_py_start) { py_start = *_py_start; } else { if (has_cstart) { owned_start = py_start = PyInt_FromSsize_t(cstart); if (unlikely(!py_start)) goto bad; } else py_start = Py_None; } if (_py_stop) { py_stop = *_py_stop; } else { if (has_cstop) { owned_stop = py_stop = PyInt_FromSsize_t(cstop); if (unlikely(!py_stop)) { Py_XDECREF(owned_start); goto bad; } } else py_stop = Py_None; } py_slice = PySlice_New(py_start, py_stop, Py_None); Py_XDECREF(owned_start); Py_XDECREF(owned_stop); if (unlikely(!py_slice)) goto bad; } #if CYTHON_COMPILING_IN_CPYTHON result = mp->mp_subscript(obj, py_slice); #else result = PyObject_GetItem(obj, py_slice); #endif if (!_py_slice) { Py_DECREF(py_slice); } return result; } PyErr_Format(PyExc_TypeError, "'%.200s' object is unsliceable", Py_TYPE(obj)->tp_name); bad: return NULL; } static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { PyErr_Format(PyExc_ValueError, "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); } static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { PyErr_Format(PyExc_ValueError, "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", index, (index == 1) ? "" : "s"); } static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); } #if PY_MAJOR_VERSION < 3 static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags) { #if PY_VERSION_HEX >= 0x02060000 if (PyObject_CheckBuffer(obj)) return PyObject_GetBuffer(obj, view, flags); #endif if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) return __pyx_pw_5numpy_7ndarray_1__getbuffer__(obj, view, flags); #if PY_VERSION_HEX < 0x02060000 if (obj->ob_type->tp_dict) { PyObject *getbuffer_cobj = PyObject_GetItem( obj->ob_type->tp_dict, __pyx_n_s_pyx_getbuffer); if (getbuffer_cobj) { getbufferproc func = (getbufferproc) PyCObject_AsVoidPtr(getbuffer_cobj); Py_DECREF(getbuffer_cobj); if (!func) goto fail; return func(obj, view, flags); } else { PyErr_Clear(); } } #endif PyErr_Format(PyExc_TypeError, "'%.200s' does not have the buffer interface", Py_TYPE(obj)->tp_name); #if PY_VERSION_HEX < 0x02060000 fail: #endif return -1; } static void __Pyx_ReleaseBuffer(Py_buffer *view) { PyObject *obj = view->obj; if (!obj) return; #if PY_VERSION_HEX >= 0x02060000 if (PyObject_CheckBuffer(obj)) { PyBuffer_Release(view); return; } #endif if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) { __pyx_pw_5numpy_7ndarray_3__releasebuffer__(obj, view); return; } #if PY_VERSION_HEX < 0x02060000 if (obj->ob_type->tp_dict) { PyObject *releasebuffer_cobj = PyObject_GetItem( obj->ob_type->tp_dict, __pyx_n_s_pyx_releasebuffer); if (releasebuffer_cobj) { releasebufferproc func = (releasebufferproc) PyCObject_AsVoidPtr(releasebuffer_cobj); Py_DECREF(releasebuffer_cobj); if (!func) goto fail; func(obj, view); return; } else { PyErr_Clear(); } } #endif goto nofail; #if PY_VERSION_HEX < 0x02060000 fail: #endif PyErr_WriteUnraisable(obj); nofail: Py_DECREF(obj); view->obj = NULL; } #endif /* PY_MAJOR_VERSION < 3 */ static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { PyObject *empty_list = 0; PyObject *module = 0; PyObject *global_dict = 0; PyObject *empty_dict = 0; PyObject *list; #if PY_VERSION_HEX < 0x03030000 PyObject *py_import; py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); if (!py_import) goto bad; #endif if (from_list) list = from_list; else { empty_list = PyList_New(0); if (!empty_list) goto bad; list = empty_list; } global_dict = PyModule_GetDict(__pyx_m); if (!global_dict) goto bad; empty_dict = PyDict_New(); if (!empty_dict) goto bad; #if PY_VERSION_HEX >= 0x02050000 { #if PY_MAJOR_VERSION >= 3 if (level == -1) { if (strchr(__Pyx_MODULE_NAME, '.')) { #if PY_VERSION_HEX < 0x03030000 PyObject *py_level = PyInt_FromLong(1); if (!py_level) goto bad; module = PyObject_CallFunctionObjArgs(py_import, name, global_dict, empty_dict, list, py_level, NULL); Py_DECREF(py_level); #else module = PyImport_ImportModuleLevelObject( name, global_dict, empty_dict, list, 1); #endif if (!module) { if (!PyErr_ExceptionMatches(PyExc_ImportError)) goto bad; PyErr_Clear(); } } level = 0; /* try absolute import on failure */ } #endif if (!module) { #if PY_VERSION_HEX < 0x03030000 PyObject *py_level = PyInt_FromLong(level); if (!py_level) goto bad; module = PyObject_CallFunctionObjArgs(py_import, name, global_dict, empty_dict, list, py_level, NULL); Py_DECREF(py_level); #else module = PyImport_ImportModuleLevelObject( name, global_dict, empty_dict, list, level); #endif } } #else if (level>0) { PyErr_SetString(PyExc_RuntimeError, "Relative import is not supported for Python <=2.4."); goto bad; } module = PyObject_CallFunctionObjArgs(py_import, name, global_dict, empty_dict, list, NULL); #endif bad: #if PY_VERSION_HEX < 0x03030000 Py_XDECREF(py_import); #endif Py_XDECREF(empty_list); Py_XDECREF(empty_dict); return module; } #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func) \ { \ func_type value = func(x); \ if (sizeof(target_type) < sizeof(func_type)) { \ if (unlikely(value != (func_type) (target_type) value)) { \ func_type zero = 0; \ PyErr_SetString(PyExc_OverflowError, \ (is_unsigned && unlikely(value < zero)) ? \ "can't convert negative value to " #target_type : \ "value too large to convert to " #target_type); \ return (target_type) -1; \ } \ } \ return (target_type) value; \ } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { const int neg_one = (int) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(int) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to int"); return (int) -1; } return (int) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(int)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (int) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to int"); return (int) -1; } if (sizeof(int) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(int, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(int) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(int, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(int)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(int) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(int) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(int) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(int, long, PyLong_AsLong) } else if (sizeof(int) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(int, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else int val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (int) -1; } } else { int val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (int) -1; val = __Pyx_PyInt_As_int(tmp); Py_DECREF(tmp); return val; } } static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { const long neg_one = (long) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(long) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(long) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); } else if (sizeof(long) <= sizeof(unsigned long long)) { return PyLong_FromUnsignedLongLong((unsigned long long) value); } } else { if (sizeof(long) <= sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(long) <= sizeof(long long)) { return PyLong_FromLongLong((long long) value); } } { int one = 1; int little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&value; return _PyLong_FromByteArray(bytes, sizeof(long), little, !is_unsigned); } } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE int64 __Pyx_PyInt_As_int64(PyObject *x) { const int64 neg_one = (int64) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(int64) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(int64, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to int64"); return (int64) -1; } return (int64) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(int64)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (int64) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to int64"); return (int64) -1; } if (sizeof(int64) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(int64, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(int64) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(int64, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(int64)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(int64) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(int64) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(int64) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(int64, long, PyLong_AsLong) } else if (sizeof(int64) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(int64, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else int64 val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (int64) -1; } } else { int64 val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (int64) -1; val = __Pyx_PyInt_As_int64(tmp); Py_DECREF(tmp); return val; } } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE size_t __Pyx_PyInt_As_size_t(PyObject *x) { const size_t neg_one = (size_t) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(size_t) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(size_t, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to size_t"); return (size_t) -1; } return (size_t) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(size_t)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (size_t) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to size_t"); return (size_t) -1; } if (sizeof(size_t) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(size_t, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(size_t) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(size_t, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(size_t)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(size_t) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(size_t) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(size_t) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(size_t, long, PyLong_AsLong) } else if (sizeof(size_t) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(size_t, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else size_t val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (size_t) -1; } } else { size_t val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (size_t) -1; val = __Pyx_PyInt_As_size_t(tmp); Py_DECREF(tmp); return val; } } static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int64(int64 value) { const int64 neg_one = (int64) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(int64) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(int64) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); } else if (sizeof(int64) <= sizeof(unsigned long long)) { return PyLong_FromUnsignedLongLong((unsigned long long) value); } } else { if (sizeof(int64) <= sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(int64) <= sizeof(long long)) { return PyLong_FromLongLong((long long) value); } } { int one = 1; int little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&value; return _PyLong_FromByteArray(bytes, sizeof(int64), little, !is_unsigned); } } #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return ::std::complex< float >(x, y); } #else static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return x + y*(__pyx_t_float_complex)_Complex_I; } #endif #else static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { __pyx_t_float_complex z; z.real = x; z.imag = y; return z; } #endif #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex a, __pyx_t_float_complex b) { return (a.real == b.real) && (a.imag == b.imag); } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; z.real = a.real + b.real; z.imag = a.imag + b.imag; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; z.real = a.real - b.real; z.imag = a.imag - b.imag; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; z.real = a.real * b.real - a.imag * b.imag; z.imag = a.real * b.imag + a.imag * b.real; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; float denom = b.real * b.real + b.imag * b.imag; z.real = (a.real * b.real + a.imag * b.imag) / denom; z.imag = (a.imag * b.real - a.real * b.imag) / denom; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex a) { __pyx_t_float_complex z; z.real = -a.real; z.imag = -a.imag; return z; } static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex a) { return (a.real == 0) && (a.imag == 0); } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex a) { __pyx_t_float_complex z; z.real = a.real; z.imag = -a.imag; return z; } #if 1 static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex z) { #if !defined(HAVE_HYPOT) || defined(_MSC_VER) return sqrtf(z.real*z.real + z.imag*z.imag); #else return hypotf(z.real, z.imag); #endif } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; float r, lnr, theta, z_r, z_theta; if (b.imag == 0 && b.real == (int)b.real) { if (b.real < 0) { float denom = a.real * a.real + a.imag * a.imag; a.real = a.real / denom; a.imag = -a.imag / denom; b.real = -b.real; } switch ((int)b.real) { case 0: z.real = 1; z.imag = 0; return z; case 1: return a; case 2: z = __Pyx_c_prodf(a, a); return __Pyx_c_prodf(a, a); case 3: z = __Pyx_c_prodf(a, a); return __Pyx_c_prodf(z, a); case 4: z = __Pyx_c_prodf(a, a); return __Pyx_c_prodf(z, z); } } if (a.imag == 0) { if (a.real == 0) { return a; } r = a.real; theta = 0; } else { r = __Pyx_c_absf(a); theta = atan2f(a.imag, a.real); } lnr = logf(r); z_r = expf(lnr * b.real - theta * b.imag); z_theta = theta * b.real + lnr * b.imag; z.real = z_r * cosf(z_theta); z.imag = z_r * sinf(z_theta); return z; } #endif #endif #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return ::std::complex< double >(x, y); } #else static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return x + y*(__pyx_t_double_complex)_Complex_I; } #endif #else static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { __pyx_t_double_complex z; z.real = x; z.imag = y; return z; } #endif #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex a, __pyx_t_double_complex b) { return (a.real == b.real) && (a.imag == b.imag); } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; z.real = a.real + b.real; z.imag = a.imag + b.imag; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; z.real = a.real - b.real; z.imag = a.imag - b.imag; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; z.real = a.real * b.real - a.imag * b.imag; z.imag = a.real * b.imag + a.imag * b.real; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; double denom = b.real * b.real + b.imag * b.imag; z.real = (a.real * b.real + a.imag * b.imag) / denom; z.imag = (a.imag * b.real - a.real * b.imag) / denom; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex a) { __pyx_t_double_complex z; z.real = -a.real; z.imag = -a.imag; return z; } static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex a) { return (a.real == 0) && (a.imag == 0); } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex a) { __pyx_t_double_complex z; z.real = a.real; z.imag = -a.imag; return z; } #if 1 static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex z) { #if !defined(HAVE_HYPOT) || defined(_MSC_VER) return sqrt(z.real*z.real + z.imag*z.imag); #else return hypot(z.real, z.imag); #endif } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; double r, lnr, theta, z_r, z_theta; if (b.imag == 0 && b.real == (int)b.real) { if (b.real < 0) { double denom = a.real * a.real + a.imag * a.imag; a.real = a.real / denom; a.imag = -a.imag / denom; b.real = -b.real; } switch ((int)b.real) { case 0: z.real = 1; z.imag = 0; return z; case 1: return a; case 2: z = __Pyx_c_prod(a, a); return __Pyx_c_prod(a, a); case 3: z = __Pyx_c_prod(a, a); return __Pyx_c_prod(z, a); case 4: z = __Pyx_c_prod(a, a); return __Pyx_c_prod(z, z); } } if (a.imag == 0) { if (a.real == 0) { return a; } r = a.real; theta = 0; } else { r = __Pyx_c_abs(a); theta = atan2(a.imag, a.real); } lnr = log(r); z_r = exp(lnr * b.real - theta * b.imag); z_theta = theta * b.real + lnr * b.imag; z.real = z_r * cos(z_theta); z.imag = z_r * sin(z_theta); return z; } #endif #endif static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { const int neg_one = (int) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(int) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(int) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); } else if (sizeof(int) <= sizeof(unsigned long long)) { return PyLong_FromUnsignedLongLong((unsigned long long) value); } } else { if (sizeof(int) <= sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(int) <= sizeof(long long)) { return PyLong_FromLongLong((long long) value); } } { int one = 1; int little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&value; return _PyLong_FromByteArray(bytes, sizeof(int), little, !is_unsigned); } } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { const long neg_one = (long) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(long) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to long"); return (long) -1; } return (long) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(long)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (long) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to long"); return (long) -1; } if (sizeof(long) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(long, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(long) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(long, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(long)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(long) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(long) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(long) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(long, long, PyLong_AsLong) } else if (sizeof(long) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(long, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else long val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (long) -1; } } else { long val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (long) -1; val = __Pyx_PyInt_As_long(tmp); Py_DECREF(tmp); return val; } } static int __Pyx_check_binary_version(void) { char ctversion[4], rtversion[4]; PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) { char message[200]; PyOS_snprintf(message, sizeof(message), "compiletime version %s of module '%.100s' " "does not match runtime version %s", ctversion, __Pyx_MODULE_NAME, rtversion); #if PY_VERSION_HEX < 0x02050000 return PyErr_Warn(NULL, message); #else return PyErr_WarnEx(NULL, message, 1); #endif } return 0; } #ifndef __PYX_HAVE_RT_ImportModule #define __PYX_HAVE_RT_ImportModule static PyObject *__Pyx_ImportModule(const char *name) { PyObject *py_name = 0; PyObject *py_module = 0; py_name = __Pyx_PyIdentifier_FromString(name); if (!py_name) goto bad; py_module = PyImport_Import(py_name); Py_DECREF(py_name); return py_module; bad: Py_XDECREF(py_name); return 0; } #endif #ifndef __PYX_HAVE_RT_ImportType #define __PYX_HAVE_RT_ImportType static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict) { PyObject *py_module = 0; PyObject *result = 0; PyObject *py_name = 0; char warning[200]; Py_ssize_t basicsize; #ifdef Py_LIMITED_API PyObject *py_basicsize; #endif py_module = __Pyx_ImportModule(module_name); if (!py_module) goto bad; py_name = __Pyx_PyIdentifier_FromString(class_name); if (!py_name) goto bad; result = PyObject_GetAttr(py_module, py_name); Py_DECREF(py_name); py_name = 0; Py_DECREF(py_module); py_module = 0; if (!result) goto bad; if (!PyType_Check(result)) { PyErr_Format(PyExc_TypeError, "%.200s.%.200s is not a type object", module_name, class_name); goto bad; } #ifndef Py_LIMITED_API basicsize = ((PyTypeObject *)result)->tp_basicsize; #else py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); if (!py_basicsize) goto bad; basicsize = PyLong_AsSsize_t(py_basicsize); Py_DECREF(py_basicsize); py_basicsize = 0; if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) goto bad; #endif if (!strict && (size_t)basicsize > size) { PyOS_snprintf(warning, sizeof(warning), "%s.%s size changed, may indicate binary incompatibility", module_name, class_name); #if PY_VERSION_HEX < 0x02050000 if (PyErr_Warn(NULL, warning) < 0) goto bad; #else if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad; #endif } else if ((size_t)basicsize != size) { PyErr_Format(PyExc_ValueError, "%.200s.%.200s has the wrong size, try recompiling", module_name, class_name); goto bad; } return (PyTypeObject *)result; bad: Py_XDECREF(py_module); Py_XDECREF(result); return NULL; } #endif static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { int start = 0, mid = 0, end = count - 1; if (end >= 0 && code_line > entries[end].code_line) { return count; } while (start < end) { mid = (start + end) / 2; if (code_line < entries[mid].code_line) { end = mid; } else if (code_line > entries[mid].code_line) { start = mid + 1; } else { return mid; } } if (code_line <= entries[mid].code_line) { return mid; } else { return mid + 1; } } static PyCodeObject *__pyx_find_code_object(int code_line) { PyCodeObject* code_object; int pos; if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) { return NULL; } pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) { return NULL; } code_object = __pyx_code_cache.entries[pos].code_object; Py_INCREF(code_object); return code_object; } static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { int pos, i; __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries; if (unlikely(!code_line)) { return; } if (unlikely(!entries)) { entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry)); if (likely(entries)) { __pyx_code_cache.entries = entries; __pyx_code_cache.max_count = 64; __pyx_code_cache.count = 1; entries[0].code_line = code_line; entries[0].code_object = code_object; Py_INCREF(code_object); } return; } pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) { PyCodeObject* tmp = entries[pos].code_object; entries[pos].code_object = code_object; Py_DECREF(tmp); return; } if (__pyx_code_cache.count == __pyx_code_cache.max_count) { int new_max = __pyx_code_cache.max_count + 64; entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc( __pyx_code_cache.entries, new_max*sizeof(__Pyx_CodeObjectCacheEntry)); if (unlikely(!entries)) { return; } __pyx_code_cache.entries = entries; __pyx_code_cache.max_count = new_max; } for (i=__pyx_code_cache.count; i>pos; i--) { entries[i] = entries[i-1]; } entries[pos].code_line = code_line; entries[pos].code_object = code_object; __pyx_code_cache.count++; Py_INCREF(code_object); } #include "compile.h" #include "frameobject.h" #include "traceback.h" static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = 0; PyObject *py_srcfile = 0; PyObject *py_funcname = 0; #if PY_MAJOR_VERSION < 3 py_srcfile = PyString_FromString(filename); #else py_srcfile = PyUnicode_FromString(filename); #endif if (!py_srcfile) goto bad; if (c_line) { #if PY_MAJOR_VERSION < 3 py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); #else py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); #endif } else { #if PY_MAJOR_VERSION < 3 py_funcname = PyString_FromString(funcname); #else py_funcname = PyUnicode_FromString(funcname); #endif } if (!py_funcname) goto bad; py_code = __Pyx_PyCode_New( 0, /*int argcount,*/ 0, /*int kwonlyargcount,*/ 0, /*int nlocals,*/ 0, /*int stacksize,*/ 0, /*int flags,*/ __pyx_empty_bytes, /*PyObject *code,*/ __pyx_empty_tuple, /*PyObject *consts,*/ __pyx_empty_tuple, /*PyObject *names,*/ __pyx_empty_tuple, /*PyObject *varnames,*/ __pyx_empty_tuple, /*PyObject *freevars,*/ __pyx_empty_tuple, /*PyObject *cellvars,*/ py_srcfile, /*PyObject *filename,*/ py_funcname, /*PyObject *name,*/ py_line, /*int firstlineno,*/ __pyx_empty_bytes /*PyObject *lnotab*/ ); Py_DECREF(py_srcfile); Py_DECREF(py_funcname); return py_code; bad: Py_XDECREF(py_srcfile); Py_XDECREF(py_funcname); return NULL; } static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = 0; PyObject *py_globals = 0; PyFrameObject *py_frame = 0; py_code = __pyx_find_code_object(c_line ? c_line : py_line); if (!py_code) { py_code = __Pyx_CreateCodeObjectForTraceback( funcname, c_line, py_line, filename); if (!py_code) goto bad; __pyx_insert_code_object(c_line ? c_line : py_line, py_code); } py_globals = PyModule_GetDict(__pyx_m); if (!py_globals) goto bad; py_frame = PyFrame_New( PyThreadState_GET(), /*PyThreadState *tstate,*/ py_code, /*PyCodeObject *code,*/ py_globals, /*PyObject *globals,*/ 0 /*PyObject *locals*/ ); if (!py_frame) goto bad; py_frame->f_lineno = py_line; PyTraceBack_Here(py_frame); bad: Py_XDECREF(py_code); Py_XDECREF(py_frame); } static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { while (t->p) { #if PY_MAJOR_VERSION < 3 if (t->is_unicode) { *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL); } else if (t->intern) { *t->p = PyString_InternFromString(t->s); } else { *t->p = PyString_FromStringAndSize(t->s, t->n - 1); } #else /* Python 3+ has unicode identifiers */ if (t->is_unicode | t->is_str) { if (t->intern) { *t->p = PyUnicode_InternFromString(t->s); } else if (t->encoding) { *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL); } else { *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1); } } else { *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1); } #endif if (!*t->p) return -1; ++t; } return 0; } static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(char* c_str) { return __Pyx_PyUnicode_FromStringAndSize(c_str, strlen(c_str)); } static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) { Py_ssize_t ignore; return __Pyx_PyObject_AsStringAndSize(o, &ignore); } static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT if ( #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII __Pyx_sys_getdefaultencoding_not_ascii && #endif PyUnicode_Check(o)) { #if PY_VERSION_HEX < 0x03030000 char* defenc_c; PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL); if (!defenc) return NULL; defenc_c = PyBytes_AS_STRING(defenc); #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII { char* end = defenc_c + PyBytes_GET_SIZE(defenc); char* c; for (c = defenc_c; c < end; c++) { if ((unsigned char) (*c) >= 128) { PyUnicode_AsASCIIString(o); return NULL; } } } #endif /*__PYX_DEFAULT_STRING_ENCODING_IS_ASCII*/ *length = PyBytes_GET_SIZE(defenc); return defenc_c; #else /* PY_VERSION_HEX < 0x03030000 */ if (PyUnicode_READY(o) == -1) return NULL; #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII if (PyUnicode_IS_ASCII(o)) { *length = PyUnicode_GET_DATA_SIZE(o); return PyUnicode_AsUTF8(o); } else { PyUnicode_AsASCIIString(o); return NULL; } #else /* __PYX_DEFAULT_STRING_ENCODING_IS_ASCII */ return PyUnicode_AsUTF8AndSize(o, length); #endif /* __PYX_DEFAULT_STRING_ENCODING_IS_ASCII */ #endif /* PY_VERSION_HEX < 0x03030000 */ } else #endif /* __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT */ #if !CYTHON_COMPILING_IN_PYPY #if PY_VERSION_HEX >= 0x02060000 if (PyByteArray_Check(o)) { *length = PyByteArray_GET_SIZE(o); return PyByteArray_AS_STRING(o); } else #endif #endif { char* result; int r = PyBytes_AsStringAndSize(o, &result, length); if (unlikely(r < 0)) { return NULL; } else { return result; } } } static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { int is_true = x == Py_True; if (is_true | (x == Py_False) | (x == Py_None)) return is_true; else return PyObject_IsTrue(x); } static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x) { PyNumberMethods *m; const char *name = NULL; PyObject *res = NULL; #if PY_MAJOR_VERSION < 3 if (PyInt_Check(x) || PyLong_Check(x)) #else if (PyLong_Check(x)) #endif return Py_INCREF(x), x; m = Py_TYPE(x)->tp_as_number; #if PY_MAJOR_VERSION < 3 if (m && m->nb_int) { name = "int"; res = PyNumber_Int(x); } else if (m && m->nb_long) { name = "long"; res = PyNumber_Long(x); } #else if (m && m->nb_int) { name = "int"; res = PyNumber_Long(x); } #endif if (res) { #if PY_MAJOR_VERSION < 3 if (!PyInt_Check(res) && !PyLong_Check(res)) { #else if (!PyLong_Check(res)) { #endif PyErr_Format(PyExc_TypeError, "__%.4s__ returned non-%.4s (type %.200s)", name, name, Py_TYPE(res)->tp_name); Py_DECREF(res); return NULL; } } else if (!PyErr_Occurred()) { PyErr_SetString(PyExc_TypeError, "an integer is required"); } return res; } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { Py_ssize_t ival; PyObject *x; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_CheckExact(b))) return PyInt_AS_LONG(b); #endif if (likely(PyLong_CheckExact(b))) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS switch (Py_SIZE(b)) { case -1: return -(sdigit)((PyLongObject*)b)->ob_digit[0]; case 0: return 0; case 1: return ((PyLongObject*)b)->ob_digit[0]; } #endif #endif #if PY_VERSION_HEX < 0x02060000 return PyInt_AsSsize_t(b); #else return PyLong_AsSsize_t(b); #endif } x = PyNumber_Index(b); if (!x) return -1; ival = PyInt_AsSsize_t(x); Py_DECREF(x); return ival; } static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { #if PY_VERSION_HEX < 0x02050000 if (ival <= LONG_MAX) return PyInt_FromLong((long)ival); else { unsigned char *bytes = (unsigned char *) &ival; int one = 1; int little = (int)*(unsigned char*)&one; return _PyLong_FromByteArray(bytes, sizeof(size_t), little, 0); } #else return PyInt_FromSize_t(ival); #endif } #endif /* Py_PYTHON_H */ healpy-1.8.1/healpy/src/_sphtools.pyx0000644000175000017500000004606212336442722020113 0ustar zoncazonca00000000000000# coding: utf-8 # Wrapper around the query_disc method of Healpix_base class import numpy as np cimport numpy as np from libcpp.string cimport string from libc.math cimport sqrt, floor, fabs cimport libc from healpy import npix2nside, nside2npix from healpy.pixelfunc import maptype import os import cython from libcpp cimport bool as cbool from _common cimport tsize, arr, xcomplex, Healpix_Ordering_Scheme, RING, NEST, Healpix_Map, Alm, ndarray2map, ndarray2alm cdef double UNSEEN = -1.6375e30 cdef double rtol_UNSEEN = 1.e-7 * 1.6375e30 cdef extern from "alm_healpix_tools.h": cdef void map2alm_iter(Healpix_Map[double] &m, Alm[xcomplex[double]] &alm, int num_iter, arr[double] &weight) cdef void map2alm_pol_iter(Healpix_Map[double] &mapT, Healpix_Map[double] &mapQ, Healpix_Map[double] &mapU, Alm[xcomplex[double]] &almT, Alm[xcomplex[double]] &almG, Alm[xcomplex[double]] &almC, int num_iter, arr[double] &weight) cdef void map2alm_spin( Healpix_Map[double] &map1, Healpix_Map[double] &map2, Alm[xcomplex[double]] &alm1, Alm[xcomplex[double]] &alm2, int spin, arr[double] &weight, cbool add_alm) cdef void alm2map_spin( Alm[xcomplex[double]] &alm1, Alm[xcomplex[double]] &alm2, Healpix_Map[double] &map1, Healpix_Map[double] &map2, int spin) cdef extern from "alm_powspec_tools.h": cdef void c_rotate_alm "rotate_alm" (Alm[xcomplex[double]] &alm, double psi, double theta, double phi) cdef void c_rotate_alm "rotate_alm" (Alm[xcomplex[double]] &ai, Alm[xcomplex[double]] &ag, Alm[xcomplex[double]] &ac, double psi, double theta, double phi) cdef extern from "healpix_data_io.h": cdef void read_weight_ring (string &dir, int nside, arr[double] &weight) DATAPATH = None def get_datapath(): global DATAPATH if DATAPATH is None: DATAPATH = os.path.join(os.path.dirname(os.path.abspath(__file__)), 'data') return DATAPATH def map2alm_spin_healpy(maps, spin, lmax = None, mmax = None): """Computes the spinned alm of a 2 Healpix maps. Parameters ---------- m : list of 2 arrays list of 2 input maps as numpy arrays spin : int spin of the alms (either 1, 2 or 3) lmax : int, scalar, optional Maximum l of the power spectrum. Default: 3*nside-1 mmax : int, scalar, optional Maximum m of the alm. Default: lmax Returns ------- alms : list of 2 arrays list of 2 alms """ maps_c = [np.ascontiguousarray(m, dtype=np.float64) for m in maps] # create UNSEEN mask for map masks = [False if count_bad(m) == 0 else mkmask(m) for m in maps_c] # Adjust lmax and mmax cdef int lmax_, mmax_, nside, npix npix = maps_c[0].size nside = npix2nside(npix) if lmax is None: lmax_ = 3 * nside - 1 else: lmax_ = lmax if mmax is None: mmax_ = lmax_ else: mmax_ = mmax # Check all maps have same npix if maps_c[1].size != npix: raise ValueError("Input maps must have same size") # View the ndarray as a Healpix_Map M1 = ndarray2map(maps_c[0], RING) M2 = ndarray2map(maps_c[1], RING) # replace UNSEEN pixels with zeros for m, mask in zip(maps_c, masks): if mask: m[mask] = 0.0 # Create an ndarray object that will contain the alm for output (to be returned) n_alm = alm_getn(lmax_, mmax_) alms = [np.empty(n_alm, dtype=np.complex128) for m in maps] # View the ndarray as an Alm # Alms = [ndarray2alm(alm, lmax_, mmax_) for alm in alms] A1 = ndarray2alm(alms[0], lmax_, mmax_) A2 = ndarray2alm(alms[1], lmax_, mmax_) # ring weights cdef arr[double] * w_arr = new arr[double]() cdef int i cdef char *c_datapath w_arr.allocAndFill(2 * nside, 1.) map2alm_spin(M1[0], M2[0], A1[0], A2[0], spin, w_arr[0], False) # restore input map with UNSEEN pixels for m, mask in zip(maps_c, masks): if mask: m[mask] = UNSEEN del w_arr del M1, M2, A1, A2 return alms def alm2map_spin_healpy(alms, nside, spin, lmax, mmax=None): """Computes maps from a set of 2 spinned alm Parameters ---------- alms : list of 2 arrays list of 2 alms nside : int requested nside of the output map spin : int spin of the alms (either 1, 2 or 3) lmax : int, scalar Maximum l of the power spectrum. mmax : int, scalar, optional Maximum m of the alm. Default: lmax Returns ------- m : list of 2 arrays list of 2 out maps in RING scheme as numpy arrays """ alms_c = [np.ascontiguousarray(alm, dtype=np.complex128) for alm in alms] npix = nside2npix(nside) maps = [np.zeros(npix, dtype=np.float64) for alm in alms] # View the ndarray as a Healpix_Map M1 = ndarray2map(maps[0], RING) M2 = ndarray2map(maps[1], RING) if not mmax: mmax = lmax # View the ndarray as an Alm A1 = ndarray2alm(alms_c[0], lmax, mmax) A2 = ndarray2alm(alms_c[1], lmax, mmax) alm2map_spin(A1[0], A2[0], M1[0], M2[0], spin) del M1, M2, A1, A2 return maps def map2alm(m, lmax = None, mmax = None, niter = 3, use_weights = False, datapath = None): """Computes the alm of a Healpix map. Parameters ---------- m : array-like, shape (Npix,) or (3, Npix) The input map or a list of 3 input maps (polariztion). lmax : int, scalar, optional Maximum l of the power spectrum. Default: 3*nside-1 mmax : int, scalar, optional Maximum m of the alm. Default: lmax iter : int, scalar, optional Number of iteration (default: 1) use_weights: bool, scalar, optional If True, use the ring weighting. Default: False. Returns ------- alm : array or tuple of arrays alm or a tuple of 3 alm (almT, almE, almB) if polarized input. """ # Check if the input map is polarized or not info = maptype(m) if info == 0: polarization = False mi = np.ascontiguousarray(m, dtype=np.float64) elif info == 1: polarization = False mi = np.ascontiguousarray(m[0], dtype=np.float64) elif info == 3: polarization = True mi = np.ascontiguousarray(m[0], dtype=np.float64) mq = np.ascontiguousarray(m[1], dtype=np.float64) mu = np.ascontiguousarray(m[2], dtype=np.float64) else: raise ValueError("Wrong input map (must be a valid healpix map " "or a sequence of 1 or 3 maps)") # create UNSEEN mask for I map mask_mi = False if count_bad(mi) == 0 else mkmask(mi) # same for polarization maps if needed if polarization: mask_mq = False if count_bad(mq) == 0 else mkmask(mq) mask_mu = False if count_bad(mu) == 0 else mkmask(mu) # Adjust lmax and mmax cdef int lmax_, mmax_, nside, npix npix = mi.size nside = npix2nside(npix) if lmax is None: lmax_ = 3 * nside - 1 else: lmax_ = lmax if mmax is None: mmax_ = lmax_ else: mmax_ = mmax # Check all maps have same npix if polarization: if mq.size != npix or mu.size != npix: raise ValueError("Input maps must have same size") # View the ndarray as a Healpix_Map MI = ndarray2map(mi, RING) if polarization: MQ = ndarray2map(mq, RING) MU = ndarray2map(mu, RING) # replace UNSEEN pixels with zeros if mask_mi is not False: mi[mask_mi] = 0.0 if polarization: if mask_mq is not False: mq[mask_mq] = 0.0 if mask_mu is not False: mu[mask_mu] = 0.0 # Create an ndarray object that will contain the alm for output (to be returned) n_alm = alm_getn(lmax_, mmax_) almI = np.empty(n_alm, dtype=np.complex128) if polarization: almG = np.empty(n_alm, dtype=np.complex128) almC = np.empty(n_alm, dtype=np.complex128) # View the ndarray as an Alm AI = ndarray2alm(almI, lmax_, mmax_) if polarization: AG = ndarray2alm(almG, lmax_, mmax_) AC = ndarray2alm(almC, lmax_, mmax_) # ring weights cdef arr[double] * w_arr = new arr[double]() cdef int i cdef char *c_datapath if use_weights: if datapath is None: datapath = get_datapath() c_datapath = datapath weightfile = 'weight_ring_n%05d.fits' % (nside) if not os.path.isfile(os.path.join(datapath, weightfile)): raise IOError('Weight file not found in %s' % (datapath)) read_weight_ring(string(c_datapath), nside, w_arr[0]) for i in range(w_arr.size()): w_arr[0][i] += 1 else: w_arr.allocAndFill(2 * nside, 1.) if polarization: map2alm_pol_iter(MI[0], MQ[0], MU[0], AI[0], AG[0], AC[0], niter, w_arr[0]) else: map2alm_iter(MI[0], AI[0], niter, w_arr[0]) # restore input map with UNSEEN pixels if mask_mi is not False: mi[mask_mi] = UNSEEN if polarization: if mask_mq is not False: mq[mask_mq] = UNSEEN if mask_mu is not False: mu[mask_mu] = UNSEEN del w_arr if polarization: del MI, MQ, MU, AI, AG, AC return almI, almG, almC else: del MI, AI return almI def alm2cl(alms, alms2 = None, lmax = None, mmax = None, lmax_out = None): """Computes (cross-)spectra from alm(s). If alm2 is given, cross-spectra between alm and alm2 are computed. If alm (and alm2 if provided) contains n alm, then n(n+1)/2 auto and cross-spectra are returned. Parameters ---------- alms : complex, array or sequence of arrays The alm from which to compute the power spectrum. If n>=2 arrays are given, computes both auto- and cross-spectra. alms2 : complex, array or sequence of 3 arrays, optional If provided, computes cross-spectra between alm and alm2. Default: alm2=alm, so auto-spectra are computed. lmax : None or int, optional The maximum l of the input alm. Default: computed from size of alm and mmax_in mmax : None or int, optional The maximum m of the input alm. Default: assume mmax_in = lmax_in lmax_out : None or int, optional The maximum l of the returned spectra. By default: the lmax of the given alm(s). Returns ------- cl : array or tuple of n(n+1)/2 arrays the spectrum <*alm* x *alm2*> if *alm* (and *alm2*) is one alm, or the auto- and cross-spectra <*alm*[i] x *alm2*[j]> if alm (and alm2) contains more than one spectra. If more than one spectrum is returned, they are ordered by diagonal. For example, if *alm* is almT, almE, almB, then the returned spectra are: TT, EE, BB, TE, EB, TB. """ ############################# # Check alm and number of spectra # cdef int Nspec, Nspec2 if not hasattr(alms, '__len__'): raise ValueError('alms must be an array or a sequence of arrays') if not hasattr(alms[0], '__len__'): alms_lonely = True alms = [alms] else: alms_lonely = False Nspec = len(alms) if alms2 is None: alms2 = alms if not hasattr(alms2, '__len__'): raise ValueError('alms2 must be an array or a sequence of arrays') if not hasattr(alms2[0], '__len__'): alms2 = [alms2] Nspec2 = len(alms2) if Nspec != Nspec2: raise ValueError('alms and alms2 must have same number of spectra') ############################################## # Check sizes of alm's and lmax/mmax/lmax_out # cdef int almsize almsize = alms[0].size for i in xrange(Nspec): if alms[i].size != almsize or alms2[i].size != almsize: raise ValueError('all alms must have same size') lmax, mmax = alm_getlmmax(alms[0], lmax, mmax) if lmax_out is None: lmax_out = lmax ####################### # Computing the spectra # cdef int j, l, m, limit cdef int lmax_ = lmax, mmax_ = mmax cdef int lmax_out_ = lmax_out cdef np.ndarray[double, ndim=1] powspec_ cdef np.ndarray[np.complex128_t, ndim=1] alm1_ cdef np.ndarray[np.complex128_t, ndim=1] alm2_ spectra = [] for n in xrange(Nspec): # diagonal rank for m in xrange(0, Nspec - n): # position in the diagonal powspec_ = np.zeros(lmax + 1) alm1_ = alms[m] alm2_ = alms2[m + n] # compute cross-spectrum alm1[n] x alm2[n+m] # and place result in result list for l in range(lmax_ + 1): j = alm_getidx(lmax_, l, 0) powspec_[l] = alm1_[j].real * alm2_[j].real limit = l if l <= mmax else mmax for m in range(1, limit + 1): j = alm_getidx(lmax_, l, m) powspec_[l] += 2 * (alm1_[j].real * alm2_[j].real + alm1_[j].imag * alm2_[j].imag) powspec_[l] /= (2 * l + 1) spectra.append(powspec_) # if only one alm was given, returns only cl and not a list with one cl if alms_lonely: spectra = spectra[0] return spectra @cython.wraparound(False) @cython.boundscheck(False) def almxfl(alm, fl, mmax = None, inplace = False): """Multiply an a_lm by a vector b_l. Parameters ---------- alm : array, double The array representing the spherical harmonics coefficients fl : array, double The array giving the factor f_l by which to multiply a_lm mmax : None or int, optional The maximum m of the input alm inplace : bool, optional If True, performs the computation in-place if possible (input alm is modified if it is a 1d-array of type float64). Otherwise, a copy of alm is done. Returns ------- alm : array, double The result of a_lm * f_l. If *inplace* is True, returns the input alm modified """ cdef np.ndarray[np.complex128_t, ndim=1] alm_ cdef np.ndarray[np.complex128_t, ndim=1] fl_ if inplace: alm_ = np.ascontiguousarray(alm, dtype = np.complex128) else: alm_ = np.array(alm, dtype = np.complex128, copy = True) fl_ = np.ascontiguousarray(fl, dtype = np.complex128) cdef int lmax_, mmax_ cdef int l, m lmax_, mmax_ = alm_getlmmax(alm_, None, mmax) cdef np.complex128_t f cdef int maxm, i cdef int flsize = fl_.size for l in xrange(lmax_ + 1): f = fl_[l] if l < flsize else 0. maxm = l if l <= mmax_ else mmax_ for m in xrange(maxm + 1): i = alm_getidx(lmax_, l, m) alm_[i] *= f return alm_ def rotate_alm(alm not None, double psi, double theta, double phi, lmax=None, mmax=None): """ This routine transforms the scalar (and tensor) a_lm coefficients to emulate the effect of an arbitrary rotation of the underlying map. The rotation is done directly on the a_lm using the Wigner rotation matrices, computed by recursion. To rotate the a_lm for l ≤ l_max the number of operations scales like l_max^3. Parameters ---------- alm : array-like of shape (n,) or (k,n), or list of arrays Complex a_lm values before and after rotation of the coordinate system. psi : float First rotation: angle ψ about the z-axis. All angles are in radians and should lie in [-2pi,2pi], the rotations are active and the referential system is assumed to be right handed. The routine coordsys2euler zyz can be used to generate the Euler angles ψ, θ, φ for rotation between standard astronomical coordinate systems. theta : float Second rotation: angle θ about the original (unrotated) y-axis phi : float. Third rotation: angle φ about the original (unrotated) z-axis. lmax : int Maximum multipole order l of the data set. mmax : int Maximum degree m of data set. """ if isinstance(alm, np.ndarray) and alm.ndim == 1: alm = [alm] if not isinstance(alm, (list, tuple, np.ndarray)) or len(alm) == 0: raise ValueError('Invalid input.') # C++ rotate_alm only handles 1 or 3 maps. The function handling 3 maps # is faster than running 3 times the 1-map function, but gives identical # results. if len(alm) not in (1, 3): for a in alm: rotate_alm(a, psi, theta, phi) return lmax, mmax = alm_getlmmax(alm[0], lmax, mmax) ai = np.ascontiguousarray(alm[0], dtype=np.complex128) AI = ndarray2alm(ai, lmax, mmax) if len(alm) == 1: c_rotate_alm(AI[0], psi, theta, phi) del AI else: ag = np.ascontiguousarray(alm[1], dtype=np.complex128) ac = np.ascontiguousarray(alm[2], dtype=np.complex128) AG = ndarray2alm(ag, lmax, mmax) AC = ndarray2alm(ac, lmax, mmax) c_rotate_alm(AI[0], AG[0], AC[0], psi, theta, phi) del AI, AG, AC cdef int alm_getn(int l, int m): if not m <= l: raise ValueError("mmax must be <= lmax") return ((m+1)*(m+2))/2 + (m+1)*(l-m) def alm_getlmmax(a, lmax, mmax): if lmax is None: if mmax is None: lmax = alm_getlmax(a.size) mmax = lmax else: lmax = alm_getlmax2(a.size, mmax) elif mmax is None: mmax = lmax return lmax, mmax @cython.cdivision(True) cdef inline int alm_getlmax(int s): cdef double x x=(-3+np.sqrt(1+8*s))/2 if x != floor(x): return -1 else: return floor(x) @cython.cdivision(True) cdef inline int alm_getlmax2(int s, int mmax): cdef double x x = (2 * s + mmax ** 2 - mmax - 2.) / (2 * mmax + 2.) if x != floor(x): return -1 else: return floor(x) @cython.cdivision(True) cdef inline int alm_getidx(int lmax, int l, int m): return m*(2*lmax+1-m)/2+l @cython.wraparound(False) @cython.boundscheck(False) cpdef mkmask(np.ndarray[double, ndim=1] m): cdef int nbad cdef int size = m.size cdef int i # first, count number of bad pixels, to see if allocating a mask is needed nbad = count_bad(m) cdef np.ndarray[np.int8_t, ndim=1] mask #cdef np.ndarray[double, ndim=1] m_ if nbad == 0: return False else: mask = np.zeros(size, dtype = np.int8) #m_ = m for i in range(size): if fabs(m[i] - UNSEEN) < rtol_UNSEEN: mask[i] = 1 mask.dtype = bool return mask @cython.wraparound(False) @cython.boundscheck(False) cpdef int count_bad(np.ndarray[double, ndim=1] m): cdef int i cdef int nbad = 0 cdef size = m.size for i in xrange(m.size): if fabs(m[i] - UNSEEN) < rtol_UNSEEN: nbad += 1 return nbad healpy-1.8.1/healpy/src/_sphtools.cpp0000644000175000017500000227153312346122725020061 0ustar zoncazonca00000000000000/* Generated by Cython 0.20.1 on Wed Jun 11 11:54:03 2014 */ #define PY_SSIZE_T_CLEAN #ifndef CYTHON_USE_PYLONG_INTERNALS #ifdef PYLONG_BITS_IN_DIGIT #define CYTHON_USE_PYLONG_INTERNALS 0 #else #include "pyconfig.h" #ifdef PYLONG_BITS_IN_DIGIT #define CYTHON_USE_PYLONG_INTERNALS 1 #else #define CYTHON_USE_PYLONG_INTERNALS 0 #endif #endif #endif #include "Python.h" #ifndef Py_PYTHON_H #error Python headers needed to compile C extensions, please install development version of Python. #elif PY_VERSION_HEX < 0x02040000 #error Cython requires Python 2.4+. #else #define CYTHON_ABI "0_20_1" #include /* For offsetof */ #ifndef offsetof #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) #endif #if !defined(WIN32) && !defined(MS_WINDOWS) #ifndef __stdcall #define __stdcall #endif #ifndef __cdecl #define __cdecl #endif #ifndef __fastcall #define __fastcall #endif #endif #ifndef DL_IMPORT #define DL_IMPORT(t) t #endif #ifndef DL_EXPORT #define DL_EXPORT(t) t #endif #ifndef PY_LONG_LONG #define PY_LONG_LONG LONG_LONG #endif #ifndef Py_HUGE_VAL #define Py_HUGE_VAL HUGE_VAL #endif #ifdef PYPY_VERSION #define CYTHON_COMPILING_IN_PYPY 1 #define CYTHON_COMPILING_IN_CPYTHON 0 #else #define CYTHON_COMPILING_IN_PYPY 0 #define CYTHON_COMPILING_IN_CPYTHON 1 #endif #if CYTHON_COMPILING_IN_PYPY #define Py_OptimizeFlag 0 #endif #if PY_VERSION_HEX < 0x02050000 typedef int Py_ssize_t; #define PY_SSIZE_T_MAX INT_MAX #define PY_SSIZE_T_MIN INT_MIN #define PY_FORMAT_SIZE_T "" #define CYTHON_FORMAT_SSIZE_T "" #define PyInt_FromSsize_t(z) PyInt_FromLong(z) #define PyInt_AsSsize_t(o) __Pyx_PyInt_As_int(o) #define PyNumber_Index(o) ((PyNumber_Check(o) && !PyFloat_Check(o)) ? 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/* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":725 * ctypedef npy_int8 int8_t * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<< * ctypedef npy_int64 int64_t * #ctypedef npy_int96 int96_t */ typedef npy_int32 __pyx_t_5numpy_int32_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":726 * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<< * #ctypedef npy_int96 int96_t * #ctypedef npy_int128 int128_t */ typedef npy_int64 __pyx_t_5numpy_int64_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":730 * #ctypedef npy_int128 int128_t * * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<< * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t */ typedef npy_uint8 __pyx_t_5numpy_uint8_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":731 * * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<< * ctypedef npy_uint32 uint32_t * ctypedef npy_uint64 uint64_t */ typedef npy_uint16 __pyx_t_5numpy_uint16_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":732 * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<< * ctypedef npy_uint64 uint64_t * #ctypedef npy_uint96 uint96_t */ typedef npy_uint32 __pyx_t_5numpy_uint32_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":733 * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<< * #ctypedef npy_uint96 uint96_t * #ctypedef npy_uint128 uint128_t */ typedef npy_uint64 __pyx_t_5numpy_uint64_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":737 * #ctypedef npy_uint128 uint128_t * * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<< * ctypedef npy_float64 float64_t * #ctypedef npy_float80 float80_t */ typedef npy_float32 __pyx_t_5numpy_float32_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":738 * * ctypedef npy_float32 float32_t * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<< * #ctypedef npy_float80 float80_t * #ctypedef npy_float128 float128_t */ typedef npy_float64 __pyx_t_5numpy_float64_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":747 * # The int types are mapped a bit surprising -- * # numpy.int corresponds to 'l' and numpy.long to 'q' * ctypedef npy_long int_t # <<<<<<<<<<<<<< * ctypedef npy_longlong long_t * ctypedef npy_longlong longlong_t */ typedef npy_long __pyx_t_5numpy_int_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":748 * # numpy.int corresponds to 'l' and numpy.long to 'q' * ctypedef npy_long int_t * ctypedef npy_longlong long_t # <<<<<<<<<<<<<< * ctypedef npy_longlong longlong_t * */ typedef npy_longlong __pyx_t_5numpy_long_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":749 * ctypedef npy_long int_t * ctypedef npy_longlong long_t * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<< * * ctypedef npy_ulong uint_t */ typedef npy_longlong __pyx_t_5numpy_longlong_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":751 * ctypedef npy_longlong longlong_t * * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<< * ctypedef npy_ulonglong ulong_t * ctypedef npy_ulonglong ulonglong_t */ typedef npy_ulong __pyx_t_5numpy_uint_t; 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/* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":758 * ctypedef npy_uintp uintp_t * * ctypedef npy_double float_t # <<<<<<<<<<<<<< * ctypedef npy_double double_t * ctypedef npy_longdouble longdouble_t */ typedef npy_double __pyx_t_5numpy_float_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":759 * * ctypedef npy_double float_t * ctypedef npy_double double_t # <<<<<<<<<<<<<< * ctypedef npy_longdouble longdouble_t * */ typedef npy_double __pyx_t_5numpy_double_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":760 * ctypedef npy_double float_t * ctypedef npy_double double_t * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<< * * ctypedef npy_cfloat cfloat_t */ typedef npy_longdouble __pyx_t_5numpy_longdouble_t; /* "_common.pxd":6 * from libcpp.vector cimport vector * * ctypedef unsigned size_t # <<<<<<<<<<<<<< * ctypedef size_t tsize * */ typedef unsigned int __pyx_t_7_common_size_t; 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/*proto*/ static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name); /*proto*/ static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[], \ PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, \ const char* function_name); /*proto*/ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) { PyListObject* L = (PyListObject*) list; Py_ssize_t len = Py_SIZE(list); if (likely(L->allocated > len)) { Py_INCREF(x); PyList_SET_ITEM(list, len, x); Py_SIZE(list) = len+1; return 0; } return PyList_Append(list, x); } #else #define __Pyx_ListComp_Append(L,x) PyList_Append(L,x) #endif static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); /*proto*/ #define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \ (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \ __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) : \ (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) : \ __Pyx_GetItemInt_Generic(o, to_py_func(i)))) #define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \ (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \ __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) : \ (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL)) static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, int wraparound, int boundscheck); #define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \ (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \ __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) : \ (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL)) static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, int wraparound, int boundscheck); static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j); static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list, int wraparound, int boundscheck); static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb); /*proto*/ static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb); /*proto*/ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); /*proto*/ static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index); static CYTHON_INLINE int __Pyx_IterFinish(void); /*proto*/ static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected); /*proto*/ static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname); static CYTHON_INLINE int __Pyx_GetBufferAndValidate(Py_buffer* buf, PyObject* obj, __Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack); static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info); static void __Pyx_RaiseBufferFallbackError(void); /*proto*/ static void __Pyx_RaiseBufferIndexError(int axis); /*proto*/ #define __Pyx_BufPtrStrided1d(type, buf, i0, s0) (type)((char*)buf + i0 * s0) #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) { PyListObject* L = (PyListObject*) list; Py_ssize_t len = Py_SIZE(list); if (likely(L->allocated > len) & likely(len > (L->allocated >> 1))) { Py_INCREF(x); PyList_SET_ITEM(list, len, x); Py_SIZE(list) = len+1; return 0; } return PyList_Append(list, x); } #else #define __Pyx_PyList_Append(L,x) PyList_Append(L,x) #endif static PyObject* __Pyx_PyObject_CallMethodTuple(PyObject* obj, PyObject* method_name, PyObject* args) { PyObject *method, *result = NULL; if (unlikely(!args)) return NULL; method = __Pyx_PyObject_GetAttrStr(obj, method_name); if (unlikely(!method)) goto bad; result = __Pyx_PyObject_Call(method, args, NULL); Py_DECREF(method); bad: Py_DECREF(args); return result; } #define __Pyx_PyObject_CallMethod3(obj, name, arg1, arg2, arg3) \ __Pyx_PyObject_CallMethodTuple(obj, name, PyTuple_Pack(3, arg1, arg2, arg3)) #define __Pyx_PyObject_CallMethod2(obj, name, arg1, arg2) \ __Pyx_PyObject_CallMethodTuple(obj, name, PyTuple_Pack(2, arg1, arg2)) #define __Pyx_PyObject_CallMethod1(obj, name, arg1) \ __Pyx_PyObject_CallMethodTuple(obj, name, PyTuple_Pack(1, arg1)) #define __Pyx_PyObject_CallMethod0(obj, name) \ __Pyx_PyObject_CallMethodTuple(obj, name, (Py_INCREF(__pyx_empty_tuple), __pyx_empty_tuple)) static CYTHON_INLINE int __Pyx_PyObject_Append(PyObject* L, PyObject* x); /*proto*/ static CYTHON_INLINE long __Pyx_div_long(long, long); /* proto */ static void __Pyx_WriteUnraisable(const char *name, int clineno, int lineno, const char *filename, int full_traceback); /*proto*/ #if CYTHON_COMPILING_IN_CPYTHON #define __Pyx_PyObject_DelAttrStr(o,n) __Pyx_PyObject_SetAttrStr(o,n,NULL) static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value) { PyTypeObject* tp = Py_TYPE(obj); if (likely(tp->tp_setattro)) return tp->tp_setattro(obj, attr_name, value); #if PY_MAJOR_VERSION < 3 if (likely(tp->tp_setattr)) return tp->tp_setattr(obj, PyString_AS_STRING(attr_name), value); #endif return PyObject_SetAttr(obj, attr_name, value); } #else #define __Pyx_PyObject_DelAttrStr(o,n) PyObject_DelAttr(o,n) #define __Pyx_PyObject_SetAttrStr(o,n,v) PyObject_SetAttr(o,n,v) #endif static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, const char *name, int exact); /*proto*/ #define __Pyx_BufPtrCContig1d(type, buf, i0, s0) ((type)buf + i0) static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void); static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name); /*proto*/ typedef struct { Py_ssize_t shape, strides, suboffsets; } __Pyx_Buf_DimInfo; typedef struct { size_t refcount; Py_buffer pybuffer; } __Pyx_Buffer; typedef struct { __Pyx_Buffer *rcbuffer; char *data; __Pyx_Buf_DimInfo diminfo[8]; } __Pyx_LocalBuf_ND; #if PY_MAJOR_VERSION < 3 static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags); static void __Pyx_ReleaseBuffer(Py_buffer *view); #else #define __Pyx_GetBuffer PyObject_GetBuffer #define __Pyx_ReleaseBuffer PyBuffer_Release #endif static Py_ssize_t __Pyx_zeros[] = {0, 0, 0, 0, 0, 0, 0, 0}; static Py_ssize_t __Pyx_minusones[] = {-1, -1, -1, -1, -1, -1, -1, -1}; static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); /*proto*/ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value); #ifndef __Pyx_CppExn2PyErr #include #include #include #include static void __Pyx_CppExn2PyErr() { try { if (PyErr_Occurred()) ; // let the latest Python exn pass through and ignore the current one else throw; } catch (const std::bad_alloc& exn) { PyErr_SetString(PyExc_MemoryError, exn.what()); } catch (const std::bad_cast& exn) { PyErr_SetString(PyExc_TypeError, exn.what()); } catch (const std::domain_error& exn) { PyErr_SetString(PyExc_ValueError, exn.what()); } catch (const std::invalid_argument& exn) { PyErr_SetString(PyExc_ValueError, exn.what()); } catch (const std::ios_base::failure& exn) { PyErr_SetString(PyExc_IOError, exn.what()); } catch (const std::out_of_range& exn) { PyErr_SetString(PyExc_IndexError, exn.what()); } catch (const std::overflow_error& exn) { PyErr_SetString(PyExc_OverflowError, exn.what()); } catch (const std::range_error& exn) { PyErr_SetString(PyExc_ArithmeticError, exn.what()); } catch (const std::underflow_error& exn) { PyErr_SetString(PyExc_ArithmeticError, exn.what()); } catch (const std::exception& exn) { PyErr_SetString(PyExc_RuntimeError, exn.what()); } catch (...) { PyErr_SetString(PyExc_RuntimeError, "Unknown exception"); } } #endif #if CYTHON_CCOMPLEX #ifdef __cplusplus #define __Pyx_CREAL(z) ((z).real()) #define __Pyx_CIMAG(z) ((z).imag()) #else #define __Pyx_CREAL(z) (__real__(z)) #define __Pyx_CIMAG(z) (__imag__(z)) #endif #else #define __Pyx_CREAL(z) ((z).real) #define __Pyx_CIMAG(z) ((z).imag) #endif #if (defined(_WIN32) || defined(__clang__)) && defined(__cplusplus) && CYTHON_CCOMPLEX #define __Pyx_SET_CREAL(z,x) ((z).real(x)) #define __Pyx_SET_CIMAG(z,y) ((z).imag(y)) #else #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x) #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y) #endif static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double, double); #if CYTHON_CCOMPLEX #define __Pyx_c_eq(a, b) ((a)==(b)) #define __Pyx_c_sum(a, b) ((a)+(b)) #define __Pyx_c_diff(a, b) ((a)-(b)) #define __Pyx_c_prod(a, b) ((a)*(b)) #define __Pyx_c_quot(a, b) ((a)/(b)) #define __Pyx_c_neg(a) (-(a)) #ifdef __cplusplus #define __Pyx_c_is_zero(z) ((z)==(double)0) #define __Pyx_c_conj(z) (::std::conj(z)) #if 1 #define __Pyx_c_abs(z) (::std::abs(z)) #define __Pyx_c_pow(a, b) (::std::pow(a, b)) #endif #else #define __Pyx_c_is_zero(z) ((z)==0) #define __Pyx_c_conj(z) (conj(z)) #if 1 #define __Pyx_c_abs(z) (cabs(z)) #define __Pyx_c_pow(a, b) (cpow(a, b)) #endif #endif #else static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex); static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex); #if 1 static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex, __pyx_t_double_complex); #endif #endif static CYTHON_INLINE long __Pyx_pow_long(long, long); /* proto */ static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); static CYTHON_INLINE size_t __Pyx_PyInt_As_size_t(PyObject *); static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float, float); #if CYTHON_CCOMPLEX #define __Pyx_c_eqf(a, b) ((a)==(b)) #define __Pyx_c_sumf(a, b) ((a)+(b)) #define __Pyx_c_difff(a, b) ((a)-(b)) #define __Pyx_c_prodf(a, b) ((a)*(b)) #define __Pyx_c_quotf(a, b) ((a)/(b)) #define __Pyx_c_negf(a) (-(a)) #ifdef __cplusplus #define __Pyx_c_is_zerof(z) ((z)==(float)0) #define __Pyx_c_conjf(z) (::std::conj(z)) #if 1 #define __Pyx_c_absf(z) (::std::abs(z)) #define __Pyx_c_powf(a, b) (::std::pow(a, b)) #endif #else #define __Pyx_c_is_zerof(z) ((z)==0) #define __Pyx_c_conjf(z) (conjf(z)) #if 1 #define __Pyx_c_absf(z) (cabsf(z)) #define __Pyx_c_powf(a, b) (cpowf(a, b)) #endif #endif #else static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex); static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex); #if 1 static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex, __pyx_t_float_complex); #endif #endif static int __Pyx_check_binary_version(void); #if !defined(__Pyx_PyIdentifier_FromString) #if PY_MAJOR_VERSION < 3 #define __Pyx_PyIdentifier_FromString(s) PyString_FromString(s) #else #define __Pyx_PyIdentifier_FromString(s) PyUnicode_FromString(s) #endif #endif static PyObject *__Pyx_ImportModule(const char *name); /*proto*/ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict); 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/* Module declarations from 'libc.stdlib' */ /* Module declarations from 'numpy' */ /* Module declarations from 'numpy' */ static PyTypeObject *__pyx_ptype_5numpy_dtype = 0; static PyTypeObject *__pyx_ptype_5numpy_flatiter = 0; static PyTypeObject *__pyx_ptype_5numpy_broadcast = 0; static PyTypeObject *__pyx_ptype_5numpy_ndarray = 0; static PyTypeObject *__pyx_ptype_5numpy_ufunc = 0; static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, char *, char *, int *); /*proto*/ /* Module declarations from 'libcpp.string' */ /* Module declarations from 'libc.math' */ /* Module declarations from 'libc' */ /* Module declarations from 'cython' */ /* Module declarations from 'libcpp' */ /* Module declarations from 'libcpp.vector' */ /* Module declarations from '_common' */ static CYTHON_INLINE Healpix_Map *__pyx_f_7_common_ndarray2map(PyArrayObject *, enum Healpix_Ordering_Scheme); /*proto*/ static CYTHON_INLINE Alm > *__pyx_f_7_common_ndarray2alm(PyArrayObject *, int, int); /*proto*/ /* Module declarations from 'healpy._sphtools' */ static double __pyx_v_6healpy_9_sphtools_UNSEEN; static double __pyx_v_6healpy_9_sphtools_rtol_UNSEEN; static int __pyx_f_6healpy_9_sphtools_alm_getn(int, int); /*proto*/ static CYTHON_INLINE int __pyx_f_6healpy_9_sphtools_alm_getlmax(int); /*proto*/ static CYTHON_INLINE int __pyx_f_6healpy_9_sphtools_alm_getlmax2(int, int); /*proto*/ static CYTHON_INLINE int __pyx_f_6healpy_9_sphtools_alm_getidx(int, int, int); /*proto*/ static PyObject *__pyx_f_6healpy_9_sphtools_mkmask(PyArrayObject *, int __pyx_skip_dispatch); /*proto*/ static int __pyx_f_6healpy_9_sphtools_count_bad(PyArrayObject *, int __pyx_skip_dispatch); /*proto*/ static __Pyx_TypeInfo __Pyx_TypeInfo_double = { "double", NULL, sizeof(double), { 0 }, 0, 'R', 0, 0 }; static __Pyx_TypeInfo __Pyx_TypeInfo___pyx_t_double_complex = { "double complex", NULL, sizeof(__pyx_t_double_complex), { 0 }, 0, 'C', 0, 0 }; static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_5numpy_int8_t = { "int8_t", NULL, sizeof(__pyx_t_5numpy_int8_t), { 0 }, 0, IS_UNSIGNED(__pyx_t_5numpy_int8_t) ? 'U' : 'I', IS_UNSIGNED(__pyx_t_5numpy_int8_t), 0 }; static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_5numpy_float64_t = { "float64_t", NULL, sizeof(__pyx_t_5numpy_float64_t), { 0 }, 0, 'R', 0, 0 }; #define __Pyx_MODULE_NAME "healpy._sphtools" int __pyx_module_is_main_healpy___sphtools = 0; /* Implementation of 'healpy._sphtools' */ static PyObject *__pyx_builtin_ValueError; static PyObject *__pyx_builtin_zip; static PyObject *__pyx_builtin_IOError; static PyObject *__pyx_builtin_range; static PyObject *__pyx_builtin_xrange; static PyObject *__pyx_builtin_RuntimeError; static PyObject *__pyx_pf_6healpy_9_sphtools_get_datapath(CYTHON_UNUSED PyObject *__pyx_self); /* proto */ static PyObject *__pyx_pf_6healpy_9_sphtools_2map2alm_spin_healpy(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_maps, PyObject *__pyx_v_spin, PyObject *__pyx_v_lmax, PyObject *__pyx_v_mmax); /* proto */ static PyObject *__pyx_pf_6healpy_9_sphtools_4alm2map_spin_healpy(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_alms, PyObject *__pyx_v_nside, PyObject *__pyx_v_spin, PyObject *__pyx_v_lmax, PyObject *__pyx_v_mmax); /* proto */ static PyObject *__pyx_pf_6healpy_9_sphtools_6map2alm(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_m, PyObject *__pyx_v_lmax, PyObject *__pyx_v_mmax, PyObject *__pyx_v_niter, PyObject *__pyx_v_use_weights, PyObject *__pyx_v_datapath); /* proto */ static PyObject *__pyx_pf_6healpy_9_sphtools_8alm2cl(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_alms, PyObject *__pyx_v_alms2, PyObject *__pyx_v_lmax, PyObject *__pyx_v_mmax, PyObject *__pyx_v_lmax_out); /* proto */ static PyObject *__pyx_pf_6healpy_9_sphtools_10almxfl(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_alm, PyObject *__pyx_v_fl, PyObject *__pyx_v_mmax, PyObject *__pyx_v_inplace); /* proto */ static PyObject *__pyx_pf_6healpy_9_sphtools_12rotate_alm(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_alm, double __pyx_v_psi, double __pyx_v_theta, double __pyx_v_phi, PyObject *__pyx_v_lmax, PyObject *__pyx_v_mmax); /* proto */ static PyObject *__pyx_pf_6healpy_9_sphtools_14alm_getlmmax(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_a, PyObject *__pyx_v_lmax, PyObject *__pyx_v_mmax); /* proto */ static PyObject *__pyx_pf_6healpy_9_sphtools_16mkmask(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_m); /* proto */ static PyObject *__pyx_pf_6healpy_9_sphtools_18count_bad(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_m); /* proto */ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ static char __pyx_k_B[] = "B"; static char __pyx_k_H[] = "H"; static char __pyx_k_I[] = "I"; static char __pyx_k_L[] = "L"; static char __pyx_k_O[] = "O"; static char __pyx_k_Q[] = "Q"; static char __pyx_k_a[] = "a"; static char __pyx_k_b[] = "b"; static char __pyx_k_d[] = "d"; static char __pyx_k_f[] = "f"; static char __pyx_k_g[] = "g"; static char __pyx_k_h[] = "h"; static char __pyx_k_i[] = "i"; static char __pyx_k_j[] = "j"; static char __pyx_k_l[] = "l"; static char __pyx_k_m[] = "m"; static char __pyx_k_n[] = "n"; static char __pyx_k_q[] = "q"; static char __pyx_k_A1[] = "A1"; static char __pyx_k_A2[] = "A2"; static char __pyx_k_AC[] = "AC"; static char __pyx_k_AG[] = "AG"; static char __pyx_k_AI[] = "AI"; static char __pyx_k_M1[] = "M1"; static char __pyx_k_M2[] = "M2"; static char __pyx_k_MI[] = "MI"; static char __pyx_k_MQ[] = "MQ"; static char __pyx_k_MU[] = "MU"; static char __pyx_k_Zd[] = "Zd"; static char __pyx_k_Zf[] = "Zf"; static char __pyx_k_Zg[] = "Zg"; static char __pyx_k_ac[] = "ac"; static char __pyx_k_ag[] = "ag"; static char __pyx_k_ai[] = "ai"; static char __pyx_k_fl[] = "fl"; static char __pyx_k_mi[] = "mi"; static char __pyx_k_mq[] = "mq"; static char __pyx_k_mu[] = "mu"; static char __pyx_k_np[] = "np"; static char __pyx_k_os[] = "os"; static char __pyx_k_alm[] = "alm"; static char __pyx_k_len[] = "__len__"; static char __pyx_k_phi[] = "phi"; static char __pyx_k_psi[] = "psi"; static char __pyx_k_zip[] = "zip"; static char __pyx_k_alm1[] = "alm1_"; static char __pyx_k_alm2[] = "alm2_"; static char __pyx_k_almC[] = "almC"; static char __pyx_k_almG[] = "almG"; static char __pyx_k_almI[] = "almI"; static char __pyx_k_alms[] = "alms"; static char __pyx_k_copy[] = "copy"; static char __pyx_k_data[] = "data"; static char __pyx_k_file[] = "__file__"; static char __pyx_k_fl_2[] = "fl_"; static char __pyx_k_info[] = "info"; static char __pyx_k_int8[] = "int8"; static char __pyx_k_join[] = "join"; static char __pyx_k_lmax[] = "lmax"; static char __pyx_k_main[] = "__main__"; static char __pyx_k_maps[] = "maps"; static char __pyx_k_mask[] = "mask"; static char __pyx_k_maxm[] = "maxm"; static char __pyx_k_mmax[] = "mmax"; static char __pyx_k_ndim[] = "ndim"; static char __pyx_k_npix[] = "npix"; static char __pyx_k_path[] = "path"; static char __pyx_k_size[] = "size"; static char __pyx_k_spin[] = "spin"; static char __pyx_k_sqrt[] = "sqrt"; static char __pyx_k_test[] = "__test__"; static char __pyx_k_Nspec[] = "Nspec"; static char __pyx_k_alm_2[] = "alm_"; static char __pyx_k_alms2[] = "alms2"; static char __pyx_k_array[] = "array"; static char __pyx_k_dtype[] = "dtype"; static char __pyx_k_empty[] = "empty"; static char __pyx_k_limit[] = "limit"; static char __pyx_k_masks[] = "masks"; static char __pyx_k_n_alm[] = "n_alm"; static char __pyx_k_niter[] = "niter"; static char __pyx_k_nside[] = "nside"; static char __pyx_k_numpy[] = "numpy"; static char __pyx_k_range[] = "range"; static char __pyx_k_theta[] = "theta"; static char __pyx_k_w_arr[] = "w_arr"; static char __pyx_k_zeros[] = "zeros"; static char __pyx_k_Nspec2[] = "Nspec2"; static char __pyx_k_alm2cl[] = "alm2cl"; static char __pyx_k_alms_c[] = "alms_c"; static char __pyx_k_almxfl[] = "almxfl"; static char __pyx_k_append[] = "append"; static char __pyx_k_flsize[] = "flsize"; static char __pyx_k_healpy[] = "healpy"; static char __pyx_k_import[] = "__import__"; static char __pyx_k_isfile[] = "isfile"; static char __pyx_k_lmax_2[] = "lmax_"; static char __pyx_k_maps_c[] = "maps_c"; static char __pyx_k_mmax_2[] = "mmax_"; static char __pyx_k_xrange[] = "xrange"; static char __pyx_k_IOError[] = "IOError"; static char __pyx_k_abspath[] = "abspath"; static char __pyx_k_almsize[] = "almsize"; static char __pyx_k_dirname[] = "dirname"; static char __pyx_k_float64[] = "float64"; static char __pyx_k_inplace[] = "inplace"; static char __pyx_k_map2alm[] = "map2alm"; static char __pyx_k_maptype[] = "maptype"; static char __pyx_k_mask_mi[] = "mask_mi"; static char __pyx_k_mask_mq[] = "mask_mq"; static char __pyx_k_mask_mu[] = "mask_mu"; static char __pyx_k_powspec[] = "powspec_"; static char __pyx_k_spectra[] = "spectra"; static char __pyx_k_DATAPATH[] = "DATAPATH"; static char __pyx_k_datapath[] = "datapath"; static char __pyx_k_lmax_out[] = "lmax_out"; static char __pyx_k_ValueError[] = "ValueError"; static char __pyx_k_c_datapath[] = "c_datapath"; static char __pyx_k_complex128[] = "complex128"; static char __pyx_k_lmax_out_2[] = "lmax_out_"; static char __pyx_k_npix2nside[] = "npix2nside"; static char __pyx_k_nside2npix[] = "nside2npix"; static char __pyx_k_rotate_alm[] = "rotate_alm"; static char __pyx_k_weightfile[] = "weightfile"; static char __pyx_k_alms_lonely[] = "alms_lonely"; static char __pyx_k_use_weights[] = "use_weights"; static char __pyx_k_RuntimeError[] = "RuntimeError"; static char __pyx_k_alm_getlmmax[] = "alm_getlmmax"; static char __pyx_k_get_datapath[] = "get_datapath"; static char __pyx_k_polarization[] = "polarization"; static char __pyx_k_Invalid_input[] = "Invalid input."; static char __pyx_k_pyx_getbuffer[] = "__pyx_getbuffer"; static char __pyx_k_healpy__sphtools[] = "healpy._sphtools"; static char __pyx_k_healpy_pixelfunc[] = "healpy.pixelfunc"; static char __pyx_k_ascontiguousarray[] = "ascontiguousarray"; static char __pyx_k_mmax_must_be_lmax[] = "mmax must be <= lmax"; static char __pyx_k_pyx_releasebuffer[] = "__pyx_releasebuffer"; static char __pyx_k_alm2map_spin_healpy[] = "alm2map_spin_healpy"; static char __pyx_k_map2alm_spin_healpy[] = "map2alm_spin_healpy"; static char __pyx_k_weight_ring_n_05d_fits[] = "weight_ring_n%05d.fits"; static char __pyx_k_Weight_file_not_found_in_s[] = "Weight file not found in %s"; static char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous"; static char __pyx_k_all_alms_must_have_same_size[] = "all alms must have same size"; static char __pyx_k_Input_maps_must_have_same_size[] = "Input maps must have same size"; static char __pyx_k_Wrong_input_map_must_be_a_valid[] = "Wrong input map (must be a valid healpix map or a sequence of 1 or 3 maps)"; static char __pyx_k_home_zonca_p_software_healpy_he[] = "/home/zonca/p/software/healpy/healpy/src/_sphtools.pyx"; static char __pyx_k_unknown_dtype_code_in_numpy_pxd[] = "unknown dtype code in numpy.pxd (%d)"; static char __pyx_k_Format_string_allocated_too_shor[] = "Format string allocated too short, see comment in numpy.pxd"; static char __pyx_k_Non_native_byte_order_not_suppor[] = "Non-native byte order not supported"; static char __pyx_k_alms2_must_be_an_array_or_a_sequ[] = "alms2 must be an array or a sequence of arrays"; static char __pyx_k_alms_and_alms2_must_have_same_nu[] = "alms and alms2 must have same number of spectra"; static char __pyx_k_alms_must_be_an_array_or_a_seque[] = "alms must be an array or a sequence of arrays"; static char __pyx_k_ndarray_is_not_Fortran_contiguou[] = "ndarray is not Fortran contiguous"; static char __pyx_k_Format_string_allocated_too_shor_2[] = "Format string allocated too short."; static PyObject *__pyx_n_s_A1; static PyObject *__pyx_n_s_A2; static PyObject *__pyx_n_s_AC; static PyObject *__pyx_n_s_AG; static PyObject *__pyx_n_s_AI; static PyObject *__pyx_n_s_DATAPATH; static PyObject *__pyx_kp_u_Format_string_allocated_too_shor; static PyObject *__pyx_kp_u_Format_string_allocated_too_shor_2; static PyObject *__pyx_n_s_IOError; static PyObject *__pyx_kp_s_Input_maps_must_have_same_size; static PyObject *__pyx_kp_s_Invalid_input; static PyObject *__pyx_n_s_M1; static PyObject *__pyx_n_s_M2; static PyObject *__pyx_n_s_MI; static PyObject *__pyx_n_s_MQ; static PyObject *__pyx_n_s_MU; static PyObject *__pyx_kp_u_Non_native_byte_order_not_suppor; static PyObject *__pyx_n_s_Nspec; static PyObject *__pyx_n_s_Nspec2; static PyObject *__pyx_n_s_RuntimeError; static PyObject *__pyx_n_s_ValueError; static PyObject *__pyx_kp_s_Weight_file_not_found_in_s; static PyObject *__pyx_kp_s_Wrong_input_map_must_be_a_valid; static PyObject *__pyx_n_s_a; static PyObject *__pyx_n_s_abspath; static PyObject *__pyx_n_s_ac; static PyObject *__pyx_n_s_ag; static PyObject *__pyx_n_s_ai; static PyObject *__pyx_kp_s_all_alms_must_have_same_size; static PyObject *__pyx_n_s_alm; static PyObject *__pyx_n_s_alm1; static PyObject *__pyx_n_s_alm2; static PyObject *__pyx_n_s_alm2cl; static PyObject *__pyx_n_s_alm2map_spin_healpy; static PyObject *__pyx_n_s_almC; static PyObject *__pyx_n_s_almG; static PyObject *__pyx_n_s_almI; static PyObject *__pyx_n_s_alm_2; static PyObject *__pyx_n_s_alm_getlmmax; static PyObject *__pyx_n_s_alms; static PyObject *__pyx_n_s_alms2; static PyObject *__pyx_kp_s_alms2_must_be_an_array_or_a_sequ; static PyObject *__pyx_kp_s_alms_and_alms2_must_have_same_nu; static PyObject *__pyx_n_s_alms_c; static PyObject *__pyx_n_s_alms_lonely; static PyObject *__pyx_kp_s_alms_must_be_an_array_or_a_seque; static PyObject *__pyx_n_s_almsize; static PyObject *__pyx_n_s_almxfl; static PyObject *__pyx_n_s_append; static PyObject *__pyx_n_s_array; static PyObject *__pyx_n_s_ascontiguousarray; static PyObject *__pyx_n_s_c_datapath; static PyObject *__pyx_n_s_complex128; static PyObject *__pyx_n_s_copy; static PyObject *__pyx_n_s_data; static PyObject *__pyx_n_s_datapath; static PyObject *__pyx_n_s_dirname; static PyObject *__pyx_n_s_dtype; static PyObject *__pyx_n_s_empty; static PyObject *__pyx_n_s_f; static PyObject *__pyx_n_s_file; static PyObject *__pyx_n_s_fl; static PyObject *__pyx_n_s_fl_2; static PyObject *__pyx_n_s_float64; static PyObject *__pyx_n_s_flsize; static PyObject *__pyx_n_s_get_datapath; static PyObject *__pyx_n_s_healpy; static PyObject *__pyx_n_s_healpy__sphtools; static PyObject *__pyx_n_s_healpy_pixelfunc; static PyObject *__pyx_kp_s_home_zonca_p_software_healpy_he; static PyObject *__pyx_n_s_i; static PyObject *__pyx_n_s_import; static PyObject *__pyx_n_s_info; static PyObject *__pyx_n_s_inplace; static PyObject *__pyx_n_s_int8; static PyObject *__pyx_n_s_isfile; static PyObject *__pyx_n_s_j; static PyObject *__pyx_n_s_join; static PyObject *__pyx_n_s_l; static PyObject *__pyx_n_s_len; static PyObject *__pyx_n_s_limit; static PyObject *__pyx_n_s_lmax; static PyObject *__pyx_n_s_lmax_2; static PyObject *__pyx_n_s_lmax_out; static PyObject *__pyx_n_s_lmax_out_2; static PyObject *__pyx_n_s_m; static PyObject *__pyx_n_s_main; static PyObject *__pyx_n_s_map2alm; static PyObject *__pyx_n_s_map2alm_spin_healpy; static PyObject *__pyx_n_s_maps; static PyObject *__pyx_n_s_maps_c; static PyObject *__pyx_n_s_maptype; static PyObject *__pyx_n_s_mask; static PyObject *__pyx_n_s_mask_mi; static PyObject *__pyx_n_s_mask_mq; static PyObject *__pyx_n_s_mask_mu; static PyObject *__pyx_n_s_masks; static PyObject *__pyx_n_s_maxm; static PyObject *__pyx_n_s_mi; static PyObject *__pyx_n_s_mmax; static PyObject *__pyx_n_s_mmax_2; static PyObject *__pyx_kp_s_mmax_must_be_lmax; static PyObject *__pyx_n_s_mq; static PyObject *__pyx_n_s_mu; static PyObject *__pyx_n_s_n; static PyObject *__pyx_n_s_n_alm; static PyObject *__pyx_kp_u_ndarray_is_not_C_contiguous; static PyObject *__pyx_kp_u_ndarray_is_not_Fortran_contiguou; static PyObject *__pyx_n_s_ndim; static PyObject *__pyx_n_s_niter; static PyObject *__pyx_n_s_np; static PyObject *__pyx_n_s_npix; static PyObject *__pyx_n_s_npix2nside; static PyObject *__pyx_n_s_nside; static PyObject *__pyx_n_s_nside2npix; static PyObject *__pyx_n_s_numpy; static PyObject *__pyx_n_s_os; static PyObject *__pyx_n_s_path; static PyObject *__pyx_n_s_phi; static PyObject *__pyx_n_s_polarization; static PyObject *__pyx_n_s_powspec; static PyObject *__pyx_n_s_psi; static PyObject *__pyx_n_s_pyx_getbuffer; static PyObject *__pyx_n_s_pyx_releasebuffer; static PyObject *__pyx_n_s_range; static PyObject *__pyx_n_s_rotate_alm; static PyObject *__pyx_n_s_size; static PyObject *__pyx_n_s_spectra; static PyObject *__pyx_n_s_spin; static PyObject *__pyx_n_s_sqrt; static PyObject *__pyx_n_s_test; static PyObject *__pyx_n_s_theta; static PyObject *__pyx_kp_u_unknown_dtype_code_in_numpy_pxd; static PyObject *__pyx_n_s_use_weights; static PyObject *__pyx_n_s_w_arr; static PyObject *__pyx_kp_s_weight_ring_n_05d_fits; static PyObject *__pyx_n_s_weightfile; static PyObject *__pyx_n_s_xrange; static PyObject *__pyx_n_s_zeros; static PyObject *__pyx_n_s_zip; static PyObject *__pyx_float_0_0; static PyObject *__pyx_int_0; static PyObject *__pyx_int_1; static PyObject *__pyx_int_2; static PyObject *__pyx_int_3; static PyObject *__pyx_int_neg_3; static PyObject *__pyx_tuple_; static PyObject *__pyx_tuple__2; static PyObject *__pyx_tuple__3; static PyObject *__pyx_tuple__4; static PyObject *__pyx_tuple__5; static PyObject *__pyx_tuple__6; static PyObject *__pyx_tuple__7; static PyObject *__pyx_tuple__8; static PyObject *__pyx_tuple__9; 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__pyx_L1_error:; __Pyx_XDECREF(__pyx_t_1); __Pyx_XDECREF(__pyx_t_2); if (__pyx_m) { __Pyx_AddTraceback("init healpy._sphtools", __pyx_clineno, __pyx_lineno, __pyx_filename); Py_DECREF(__pyx_m); __pyx_m = 0; } else if (!PyErr_Occurred()) { PyErr_SetString(PyExc_ImportError, "init healpy._sphtools"); } __pyx_L0:; __Pyx_RefNannyFinishContext(); #if PY_MAJOR_VERSION < 3 return; #else return __pyx_m; #endif } /* Runtime support code */ #if CYTHON_REFNANNY static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname) { PyObject *m = NULL, *p = NULL; void *r = NULL; m = PyImport_ImportModule((char *)modname); if (!m) goto end; p = PyObject_GetAttrString(m, (char *)"RefNannyAPI"); if (!p) goto end; r = PyLong_AsVoidPtr(p); end: Py_XDECREF(p); Py_XDECREF(m); return (__Pyx_RefNannyAPIStruct *)r; } #endif /* CYTHON_REFNANNY */ static PyObject *__Pyx_GetBuiltinName(PyObject *name) { PyObject* result = __Pyx_PyObject_GetAttrStr(__pyx_b, name); if (unlikely(!result)) { PyErr_Format(PyExc_NameError, #if PY_MAJOR_VERSION >= 3 "name '%U' is not defined", name); #else "name '%.200s' is not defined", PyString_AS_STRING(name)); #endif } return result; } static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) { PyObject *result; #if CYTHON_COMPILING_IN_CPYTHON result = PyDict_GetItem(__pyx_d, name); if (result) { Py_INCREF(result); } else { #else result = PyObject_GetItem(__pyx_d, name); if (!result) { PyErr_Clear(); #endif result = __Pyx_GetBuiltinName(name); } return result; } #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) { PyObject *result; ternaryfunc call = func->ob_type->tp_call; if (unlikely(!call)) return PyObject_Call(func, arg, kw); #if PY_VERSION_HEX >= 0x02060000 if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) return NULL; #endif result = (*call)(func, arg, kw); #if PY_VERSION_HEX >= 0x02060000 Py_LeaveRecursiveCall(); #endif if (unlikely(!result) && unlikely(!PyErr_Occurred())) { PyErr_SetString( PyExc_SystemError, "NULL result without error in PyObject_Call"); } return result; } #endif static void __Pyx_RaiseArgtupleInvalid( const char* func_name, int exact, Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found) { Py_ssize_t num_expected; const char *more_or_less; if (num_found < num_min) { num_expected = num_min; more_or_less = "at least"; } else { num_expected = num_max; more_or_less = "at most"; } if (exact) { more_or_less = "exactly"; } PyErr_Format(PyExc_TypeError, "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)", func_name, more_or_less, num_expected, (num_expected == 1) ? "" : "s", num_found); } static void __Pyx_RaiseDoubleKeywordsError( const char* func_name, PyObject* kw_name) { PyErr_Format(PyExc_TypeError, #if PY_MAJOR_VERSION >= 3 "%s() got multiple values for keyword argument '%U'", func_name, kw_name); #else "%s() got multiple values for keyword argument '%s'", func_name, PyString_AsString(kw_name)); #endif } static int __Pyx_ParseOptionalKeywords( PyObject *kwds, PyObject **argnames[], PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, const char* function_name) { PyObject *key = 0, *value = 0; Py_ssize_t pos = 0; PyObject*** name; PyObject*** first_kw_arg = argnames + num_pos_args; while (PyDict_Next(kwds, &pos, &key, &value)) { name = first_kw_arg; while (*name && (**name != key)) name++; if (*name) { values[name-argnames] = value; continue; } name = first_kw_arg; #if PY_MAJOR_VERSION < 3 if (likely(PyString_CheckExact(key)) || likely(PyString_Check(key))) { while (*name) { if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key)) && _PyString_Eq(**name, key)) { values[name-argnames] = value; break; } name++; } if (*name) continue; else { PyObject*** argname = argnames; while (argname != first_kw_arg) { if ((**argname == key) || ( (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key)) && _PyString_Eq(**argname, key))) { goto arg_passed_twice; } argname++; } } } else #endif if (likely(PyUnicode_Check(key))) { while (*name) { int cmp = (**name == key) ? 0 : #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : #endif PyUnicode_Compare(**name, key); if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; if (cmp == 0) { values[name-argnames] = value; break; } name++; } if (*name) continue; else { PyObject*** argname = argnames; while (argname != first_kw_arg) { int cmp = (**argname == key) ? 0 : #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : #endif PyUnicode_Compare(**argname, key); if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; if (cmp == 0) goto arg_passed_twice; argname++; } } } else goto invalid_keyword_type; if (kwds2) { if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad; } else { goto invalid_keyword; } } return 0; arg_passed_twice: __Pyx_RaiseDoubleKeywordsError(function_name, key); goto bad; invalid_keyword_type: PyErr_Format(PyExc_TypeError, "%.200s() keywords must be strings", function_name); goto bad; invalid_keyword: PyErr_Format(PyExc_TypeError, #if PY_MAJOR_VERSION < 3 "%.200s() got an unexpected keyword argument '%.200s'", function_name, PyString_AsString(key)); #else "%s() got an unexpected keyword argument '%U'", function_name, key); #endif bad: return -1; } static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { if (unlikely(!type)) { PyErr_SetString(PyExc_SystemError, "Missing type object"); return 0; } if (likely(PyObject_TypeCheck(obj, type))) return 1; PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", Py_TYPE(obj)->tp_name, type->tp_name); return 0; } static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { PyObject *r; if (!j) return NULL; r = PyObject_GetItem(o, j); Py_DECREF(j); return r; } static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, int wraparound, int boundscheck) { #if CYTHON_COMPILING_IN_CPYTHON if (wraparound & unlikely(i < 0)) i += PyList_GET_SIZE(o); if ((!boundscheck) || likely((0 <= i) & (i < PyList_GET_SIZE(o)))) { PyObject *r = PyList_GET_ITEM(o, i); Py_INCREF(r); return r; } return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); #else return PySequence_GetItem(o, i); #endif } static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, int wraparound, int boundscheck) { #if CYTHON_COMPILING_IN_CPYTHON if (wraparound & unlikely(i < 0)) i += PyTuple_GET_SIZE(o); if ((!boundscheck) || likely((0 <= i) & (i < PyTuple_GET_SIZE(o)))) { PyObject *r = PyTuple_GET_ITEM(o, i); Py_INCREF(r); return r; } return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); #else return PySequence_GetItem(o, i); #endif } static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list, int wraparound, int boundscheck) { #if CYTHON_COMPILING_IN_CPYTHON if (is_list || PyList_CheckExact(o)) { Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o); if ((!boundscheck) || (likely((n >= 0) & (n < PyList_GET_SIZE(o))))) { PyObject *r = PyList_GET_ITEM(o, n); Py_INCREF(r); return r; } } else if (PyTuple_CheckExact(o)) { Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o); if ((!boundscheck) || likely((n >= 0) & (n < PyTuple_GET_SIZE(o)))) { PyObject *r = PyTuple_GET_ITEM(o, n); Py_INCREF(r); return r; } } else { PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence; if (likely(m && m->sq_item)) { if (wraparound && unlikely(i < 0) && likely(m->sq_length)) { Py_ssize_t l = m->sq_length(o); if (likely(l >= 0)) { i += l; } else { if (PyErr_ExceptionMatches(PyExc_OverflowError)) PyErr_Clear(); else return NULL; } } return m->sq_item(o, i); } } #else if (is_list || PySequence_Check(o)) { return PySequence_GetItem(o, i); } #endif return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); } static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb) { #if CYTHON_COMPILING_IN_CPYTHON PyObject *tmp_type, *tmp_value, *tmp_tb; PyThreadState *tstate = PyThreadState_GET(); tmp_type = tstate->curexc_type; tmp_value = tstate->curexc_value; tmp_tb = tstate->curexc_traceback; tstate->curexc_type = type; tstate->curexc_value = value; tstate->curexc_traceback = tb; Py_XDECREF(tmp_type); Py_XDECREF(tmp_value); Py_XDECREF(tmp_tb); #else PyErr_Restore(type, value, tb); #endif } static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb) { #if CYTHON_COMPILING_IN_CPYTHON PyThreadState *tstate = PyThreadState_GET(); *type = tstate->curexc_type; *value = tstate->curexc_value; *tb = tstate->curexc_traceback; tstate->curexc_type = 0; tstate->curexc_value = 0; tstate->curexc_traceback = 0; #else PyErr_Fetch(type, value, tb); #endif } #if PY_MAJOR_VERSION < 3 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, CYTHON_UNUSED PyObject *cause) { Py_XINCREF(type); if (!value || value == Py_None) value = NULL; else Py_INCREF(value); if (!tb || tb == Py_None) tb = NULL; else { Py_INCREF(tb); if (!PyTraceBack_Check(tb)) { PyErr_SetString(PyExc_TypeError, "raise: arg 3 must be a traceback or None"); goto raise_error; } } #if PY_VERSION_HEX < 0x02050000 if (PyClass_Check(type)) { #else if (PyType_Check(type)) { #endif #if CYTHON_COMPILING_IN_PYPY if (!value) { Py_INCREF(Py_None); value = Py_None; } #endif PyErr_NormalizeException(&type, &value, &tb); } else { if (value) { PyErr_SetString(PyExc_TypeError, "instance exception may not have a separate value"); goto raise_error; } value = type; #if PY_VERSION_HEX < 0x02050000 if (PyInstance_Check(type)) { type = (PyObject*) ((PyInstanceObject*)type)->in_class; Py_INCREF(type); } else { type = 0; PyErr_SetString(PyExc_TypeError, "raise: exception must be an old-style class or instance"); goto raise_error; } #else type = (PyObject*) Py_TYPE(type); Py_INCREF(type); if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) { PyErr_SetString(PyExc_TypeError, "raise: exception class must be a subclass of BaseException"); goto raise_error; } #endif } __Pyx_ErrRestore(type, value, tb); return; raise_error: Py_XDECREF(value); Py_XDECREF(type); Py_XDECREF(tb); return; } #else /* Python 3+ */ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { PyObject* owned_instance = NULL; if (tb == Py_None) { tb = 0; } else if (tb && !PyTraceBack_Check(tb)) { PyErr_SetString(PyExc_TypeError, "raise: arg 3 must be a traceback or None"); goto bad; } if (value == Py_None) value = 0; if (PyExceptionInstance_Check(type)) { if (value) { PyErr_SetString(PyExc_TypeError, "instance exception may not have a separate value"); goto bad; } value = type; type = (PyObject*) Py_TYPE(value); } else if (PyExceptionClass_Check(type)) { PyObject *instance_class = NULL; if (value && PyExceptionInstance_Check(value)) { instance_class = (PyObject*) Py_TYPE(value); if (instance_class != type) { if (PyObject_IsSubclass(instance_class, type)) { type = instance_class; } else { instance_class = NULL; } } } if (!instance_class) { PyObject *args; if (!value) args = PyTuple_New(0); else if (PyTuple_Check(value)) { Py_INCREF(value); args = value; } else args = PyTuple_Pack(1, value); if (!args) goto bad; owned_instance = PyObject_Call(type, args, NULL); Py_DECREF(args); if (!owned_instance) goto bad; value = owned_instance; if (!PyExceptionInstance_Check(value)) { PyErr_Format(PyExc_TypeError, "calling %R should have returned an instance of " "BaseException, not %R", type, Py_TYPE(value)); goto bad; } } } else { PyErr_SetString(PyExc_TypeError, "raise: exception class must be a subclass of BaseException"); goto bad; } #if PY_VERSION_HEX >= 0x03030000 if (cause) { #else if (cause && cause != Py_None) { #endif PyObject *fixed_cause; if (cause == Py_None) { fixed_cause = NULL; } else if (PyExceptionClass_Check(cause)) { fixed_cause = PyObject_CallObject(cause, NULL); if (fixed_cause == NULL) goto bad; } else if (PyExceptionInstance_Check(cause)) { fixed_cause = cause; Py_INCREF(fixed_cause); } else { PyErr_SetString(PyExc_TypeError, "exception causes must derive from " "BaseException"); goto bad; } PyException_SetCause(value, fixed_cause); } PyErr_SetObject(type, value); if (tb) { PyThreadState *tstate = PyThreadState_GET(); PyObject* tmp_tb = tstate->curexc_traceback; if (tb != tmp_tb) { Py_INCREF(tb); tstate->curexc_traceback = tb; Py_XDECREF(tmp_tb); } } bad: Py_XDECREF(owned_instance); return; } #endif static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { PyErr_Format(PyExc_ValueError, "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); } static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { PyErr_Format(PyExc_ValueError, "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", index, (index == 1) ? "" : "s"); } static CYTHON_INLINE int __Pyx_IterFinish(void) { #if CYTHON_COMPILING_IN_CPYTHON PyThreadState *tstate = PyThreadState_GET(); PyObject* exc_type = tstate->curexc_type; if (unlikely(exc_type)) { if (likely(exc_type == PyExc_StopIteration) || PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration)) { PyObject *exc_value, *exc_tb; exc_value = tstate->curexc_value; exc_tb = tstate->curexc_traceback; tstate->curexc_type = 0; tstate->curexc_value = 0; tstate->curexc_traceback = 0; Py_DECREF(exc_type); Py_XDECREF(exc_value); Py_XDECREF(exc_tb); return 0; } else { return -1; } } return 0; #else if (unlikely(PyErr_Occurred())) { if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) { PyErr_Clear(); return 0; } else { return -1; } } return 0; #endif } static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) { if (unlikely(retval)) { Py_DECREF(retval); __Pyx_RaiseTooManyValuesError(expected); return -1; } else { return __Pyx_IterFinish(); } return 0; } static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname) { PyErr_Format(PyExc_UnboundLocalError, "local variable '%s' referenced before assignment", varname); } static CYTHON_INLINE int __Pyx_IsLittleEndian(void) { unsigned int n = 1; return *(unsigned char*)(&n) != 0; } static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, __Pyx_BufFmt_StackElem* stack, __Pyx_TypeInfo* type) { stack[0].field = &ctx->root; stack[0].parent_offset = 0; ctx->root.type = type; ctx->root.name = "buffer dtype"; ctx->root.offset = 0; ctx->head = stack; ctx->head->field = &ctx->root; ctx->fmt_offset = 0; ctx->head->parent_offset = 0; ctx->new_packmode = '@'; ctx->enc_packmode = '@'; ctx->new_count = 1; ctx->enc_count = 0; ctx->enc_type = 0; ctx->is_complex = 0; ctx->is_valid_array = 0; ctx->struct_alignment = 0; while (type->typegroup == 'S') { ++ctx->head; ctx->head->field = type->fields; ctx->head->parent_offset = 0; type = type->fields->type; } } static int __Pyx_BufFmt_ParseNumber(const char** ts) { int count; const char* t = *ts; if (*t < '0' || *t > '9') { return -1; } else { count = *t++ - '0'; while (*t >= '0' && *t < '9') { count *= 10; count += *t++ - '0'; } } *ts = t; return count; } static int __Pyx_BufFmt_ExpectNumber(const char **ts) { int number = __Pyx_BufFmt_ParseNumber(ts); if (number == -1) /* First char was not a digit */ PyErr_Format(PyExc_ValueError,\ "Does not understand character buffer dtype format string ('%c')", **ts); return number; } static void __Pyx_BufFmt_RaiseUnexpectedChar(char ch) { PyErr_Format(PyExc_ValueError, "Unexpected format string character: '%c'", ch); } static const char* __Pyx_BufFmt_DescribeTypeChar(char ch, int is_complex) { switch (ch) { case 'c': return "'char'"; case 'b': return "'signed char'"; case 'B': return "'unsigned char'"; case 'h': return "'short'"; case 'H': return "'unsigned short'"; case 'i': return "'int'"; case 'I': return "'unsigned int'"; case 'l': return "'long'"; case 'L': return "'unsigned long'"; case 'q': return "'long long'"; case 'Q': return "'unsigned long long'"; case 'f': return (is_complex ? "'complex float'" : "'float'"); case 'd': return (is_complex ? "'complex double'" : "'double'"); case 'g': return (is_complex ? "'complex long double'" : "'long double'"); case 'T': return "a struct"; case 'O': return "Python object"; case 'P': return "a pointer"; case 's': case 'p': return "a string"; case 0: return "end"; default: return "unparseable format string"; } } static size_t __Pyx_BufFmt_TypeCharToStandardSize(char ch, int is_complex) { switch (ch) { case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; case 'h': case 'H': return 2; case 'i': case 'I': case 'l': case 'L': return 4; case 'q': case 'Q': return 8; case 'f': return (is_complex ? 8 : 4); case 'd': return (is_complex ? 16 : 8); case 'g': { PyErr_SetString(PyExc_ValueError, "Python does not define a standard format string size for long double ('g').."); return 0; } case 'O': case 'P': return sizeof(void*); default: __Pyx_BufFmt_RaiseUnexpectedChar(ch); return 0; } } static size_t __Pyx_BufFmt_TypeCharToNativeSize(char ch, int is_complex) { switch (ch) { case 'c': case 'b': case 'B': case 's': case 'p': return 1; case 'h': case 'H': return sizeof(short); case 'i': case 'I': return sizeof(int); case 'l': case 'L': return sizeof(long); #ifdef HAVE_LONG_LONG case 'q': case 'Q': return sizeof(PY_LONG_LONG); #endif case 'f': return sizeof(float) * (is_complex ? 2 : 1); case 'd': return sizeof(double) * (is_complex ? 2 : 1); case 'g': return sizeof(long double) * (is_complex ? 2 : 1); case 'O': case 'P': return sizeof(void*); default: { __Pyx_BufFmt_RaiseUnexpectedChar(ch); return 0; } } } typedef struct { char c; short x; } __Pyx_st_short; typedef struct { char c; int x; } __Pyx_st_int; typedef struct { char c; long x; } __Pyx_st_long; typedef struct { char c; float x; } __Pyx_st_float; typedef struct { char c; double x; } __Pyx_st_double; typedef struct { char c; long double x; } __Pyx_st_longdouble; typedef struct { char c; void *x; } __Pyx_st_void_p; #ifdef HAVE_LONG_LONG typedef struct { char c; PY_LONG_LONG x; } __Pyx_st_longlong; #endif static size_t __Pyx_BufFmt_TypeCharToAlignment(char ch, CYTHON_UNUSED int is_complex) { switch (ch) { case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; case 'h': case 'H': return sizeof(__Pyx_st_short) - sizeof(short); case 'i': case 'I': return sizeof(__Pyx_st_int) - sizeof(int); case 'l': case 'L': return sizeof(__Pyx_st_long) - sizeof(long); #ifdef HAVE_LONG_LONG case 'q': case 'Q': return sizeof(__Pyx_st_longlong) - sizeof(PY_LONG_LONG); #endif case 'f': return sizeof(__Pyx_st_float) - sizeof(float); case 'd': return sizeof(__Pyx_st_double) - sizeof(double); case 'g': return sizeof(__Pyx_st_longdouble) - sizeof(long double); case 'P': case 'O': return sizeof(__Pyx_st_void_p) - sizeof(void*); default: __Pyx_BufFmt_RaiseUnexpectedChar(ch); return 0; } } /* These are for computing the padding at the end of the struct to align on the first member of the struct. This will probably the same as above, but we don't have any guarantees. */ typedef struct { short x; char c; } __Pyx_pad_short; typedef struct { int x; char c; } __Pyx_pad_int; typedef struct { long x; char c; } __Pyx_pad_long; typedef struct { float x; char c; } __Pyx_pad_float; typedef struct { double x; char c; } __Pyx_pad_double; typedef struct { long double x; char c; } __Pyx_pad_longdouble; typedef struct { void *x; char c; } __Pyx_pad_void_p; #ifdef HAVE_LONG_LONG typedef struct { PY_LONG_LONG x; char c; } __Pyx_pad_longlong; #endif static size_t __Pyx_BufFmt_TypeCharToPadding(char ch, CYTHON_UNUSED int is_complex) { switch (ch) { case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; case 'h': case 'H': return sizeof(__Pyx_pad_short) - sizeof(short); case 'i': case 'I': return sizeof(__Pyx_pad_int) - sizeof(int); case 'l': case 'L': return sizeof(__Pyx_pad_long) - sizeof(long); #ifdef HAVE_LONG_LONG case 'q': case 'Q': return sizeof(__Pyx_pad_longlong) - sizeof(PY_LONG_LONG); #endif case 'f': return sizeof(__Pyx_pad_float) - sizeof(float); case 'd': return sizeof(__Pyx_pad_double) - sizeof(double); case 'g': return sizeof(__Pyx_pad_longdouble) - sizeof(long double); case 'P': case 'O': return sizeof(__Pyx_pad_void_p) - sizeof(void*); default: __Pyx_BufFmt_RaiseUnexpectedChar(ch); return 0; } } static char __Pyx_BufFmt_TypeCharToGroup(char ch, int is_complex) { switch (ch) { case 'c': return 'H'; case 'b': case 'h': case 'i': case 'l': case 'q': case 's': case 'p': return 'I'; case 'B': case 'H': case 'I': case 'L': case 'Q': return 'U'; case 'f': case 'd': case 'g': return (is_complex ? 'C' : 'R'); case 'O': return 'O'; case 'P': return 'P'; default: { __Pyx_BufFmt_RaiseUnexpectedChar(ch); return 0; } } } static void __Pyx_BufFmt_RaiseExpected(__Pyx_BufFmt_Context* ctx) { if (ctx->head == NULL || ctx->head->field == &ctx->root) { const char* expected; const char* quote; if (ctx->head == NULL) { expected = "end"; quote = ""; } else { expected = ctx->head->field->type->name; quote = "'"; } PyErr_Format(PyExc_ValueError, "Buffer dtype mismatch, expected %s%s%s but got %s", quote, expected, quote, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex)); } else { __Pyx_StructField* field = ctx->head->field; __Pyx_StructField* parent = (ctx->head - 1)->field; PyErr_Format(PyExc_ValueError, "Buffer dtype mismatch, expected '%s' but got %s in '%s.%s'", field->type->name, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex), parent->type->name, field->name); } } static int __Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context* ctx) { char group; size_t size, offset, arraysize = 1; if (ctx->enc_type == 0) return 0; if (ctx->head->field->type->arraysize[0]) { int i, ndim = 0; if (ctx->enc_type == 's' || ctx->enc_type == 'p') { ctx->is_valid_array = ctx->head->field->type->ndim == 1; ndim = 1; if (ctx->enc_count != ctx->head->field->type->arraysize[0]) { PyErr_Format(PyExc_ValueError, "Expected a dimension of size %zu, got %zu", ctx->head->field->type->arraysize[0], ctx->enc_count); return -1; } } if (!ctx->is_valid_array) { PyErr_Format(PyExc_ValueError, "Expected %d dimensions, got %d", ctx->head->field->type->ndim, ndim); return -1; } for (i = 0; i < ctx->head->field->type->ndim; i++) { arraysize *= ctx->head->field->type->arraysize[i]; } ctx->is_valid_array = 0; ctx->enc_count = 1; } group = __Pyx_BufFmt_TypeCharToGroup(ctx->enc_type, ctx->is_complex); do { __Pyx_StructField* field = ctx->head->field; __Pyx_TypeInfo* type = field->type; if (ctx->enc_packmode == '@' || ctx->enc_packmode == '^') { size = __Pyx_BufFmt_TypeCharToNativeSize(ctx->enc_type, ctx->is_complex); } else { size = __Pyx_BufFmt_TypeCharToStandardSize(ctx->enc_type, ctx->is_complex); } if (ctx->enc_packmode == '@') { size_t align_at = __Pyx_BufFmt_TypeCharToAlignment(ctx->enc_type, ctx->is_complex); size_t align_mod_offset; if (align_at == 0) return -1; align_mod_offset = ctx->fmt_offset % align_at; if (align_mod_offset > 0) ctx->fmt_offset += align_at - align_mod_offset; if (ctx->struct_alignment == 0) ctx->struct_alignment = __Pyx_BufFmt_TypeCharToPadding(ctx->enc_type, ctx->is_complex); } if (type->size != size || type->typegroup != group) { if (type->typegroup == 'C' && type->fields != NULL) { size_t parent_offset = ctx->head->parent_offset + field->offset; ++ctx->head; ctx->head->field = type->fields; ctx->head->parent_offset = parent_offset; continue; } if ((type->typegroup == 'H' || group == 'H') && type->size == size) { } else { __Pyx_BufFmt_RaiseExpected(ctx); return -1; } } offset = ctx->head->parent_offset + field->offset; if (ctx->fmt_offset != offset) { PyErr_Format(PyExc_ValueError, "Buffer dtype mismatch; next field is at offset %" CYTHON_FORMAT_SSIZE_T "d but %" CYTHON_FORMAT_SSIZE_T "d expected", (Py_ssize_t)ctx->fmt_offset, (Py_ssize_t)offset); return -1; } ctx->fmt_offset += size; if (arraysize) ctx->fmt_offset += (arraysize - 1) * size; --ctx->enc_count; /* Consume from buffer string */ while (1) { if (field == &ctx->root) { ctx->head = NULL; if (ctx->enc_count != 0) { __Pyx_BufFmt_RaiseExpected(ctx); return -1; } break; /* breaks both loops as ctx->enc_count == 0 */ } ctx->head->field = ++field; if (field->type == NULL) { --ctx->head; field = ctx->head->field; continue; } else if (field->type->typegroup == 'S') { size_t parent_offset = ctx->head->parent_offset + field->offset; if (field->type->fields->type == NULL) continue; /* empty struct */ field = field->type->fields; ++ctx->head; ctx->head->field = field; ctx->head->parent_offset = parent_offset; break; } else { break; } } } while (ctx->enc_count); ctx->enc_type = 0; ctx->is_complex = 0; return 0; } static CYTHON_INLINE PyObject * __pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp) { const char *ts = *tsp; int i = 0, number; int ndim = ctx->head->field->type->ndim; ; ++ts; if (ctx->new_count != 1) { PyErr_SetString(PyExc_ValueError, "Cannot handle repeated arrays in format string"); return NULL; } if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; while (*ts && *ts != ')') { switch (*ts) { case ' ': case '\f': case '\r': case '\n': case '\t': case '\v': continue; default: break; /* not a 'break' in the loop */ } number = __Pyx_BufFmt_ExpectNumber(&ts); if (number == -1) return NULL; if (i < ndim && (size_t) number != ctx->head->field->type->arraysize[i]) return PyErr_Format(PyExc_ValueError, "Expected a dimension of size %zu, got %d", ctx->head->field->type->arraysize[i], number); if (*ts != ',' && *ts != ')') return PyErr_Format(PyExc_ValueError, "Expected a comma in format string, got '%c'", *ts); if (*ts == ',') ts++; i++; } if (i != ndim) return PyErr_Format(PyExc_ValueError, "Expected %d dimension(s), got %d", ctx->head->field->type->ndim, i); if (!*ts) { PyErr_SetString(PyExc_ValueError, "Unexpected end of format string, expected ')'"); return NULL; } ctx->is_valid_array = 1; ctx->new_count = 1; *tsp = ++ts; return Py_None; } static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts) { int got_Z = 0; while (1) { switch(*ts) { case 0: if (ctx->enc_type != 0 && ctx->head == NULL) { __Pyx_BufFmt_RaiseExpected(ctx); return NULL; } if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; if (ctx->head != NULL) { __Pyx_BufFmt_RaiseExpected(ctx); return NULL; } return ts; case ' ': case 10: case 13: ++ts; break; case '<': if (!__Pyx_IsLittleEndian()) { PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler"); return NULL; } ctx->new_packmode = '='; ++ts; break; case '>': case '!': if (__Pyx_IsLittleEndian()) { PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler"); return NULL; } ctx->new_packmode = '='; ++ts; break; case '=': case '@': case '^': ctx->new_packmode = *ts++; break; case 'T': /* substruct */ { const char* ts_after_sub; size_t i, struct_count = ctx->new_count; size_t struct_alignment = ctx->struct_alignment; ctx->new_count = 1; ++ts; if (*ts != '{') { PyErr_SetString(PyExc_ValueError, "Buffer acquisition: Expected '{' after 'T'"); return NULL; } if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; ctx->enc_type = 0; /* Erase processed last struct element */ ctx->enc_count = 0; ctx->struct_alignment = 0; ++ts; ts_after_sub = ts; for (i = 0; i != struct_count; ++i) { ts_after_sub = __Pyx_BufFmt_CheckString(ctx, ts); if (!ts_after_sub) return NULL; } ts = ts_after_sub; if (struct_alignment) ctx->struct_alignment = struct_alignment; } break; case '}': /* end of substruct; either repeat or move on */ { size_t alignment = ctx->struct_alignment; ++ts; if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; ctx->enc_type = 0; /* Erase processed last struct element */ if (alignment && ctx->fmt_offset % alignment) { ctx->fmt_offset += alignment - (ctx->fmt_offset % alignment); } } return ts; case 'x': if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; ctx->fmt_offset += ctx->new_count; ctx->new_count = 1; ctx->enc_count = 0; ctx->enc_type = 0; ctx->enc_packmode = ctx->new_packmode; ++ts; break; case 'Z': got_Z = 1; ++ts; if (*ts != 'f' && *ts != 'd' && *ts != 'g') { __Pyx_BufFmt_RaiseUnexpectedChar('Z'); return NULL; } /* fall through */ case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I': case 'l': case 'L': case 'q': case 'Q': case 'f': case 'd': case 'g': case 'O': case 's': case 'p': if (ctx->enc_type == *ts && got_Z == ctx->is_complex && ctx->enc_packmode == ctx->new_packmode) { ctx->enc_count += ctx->new_count; } else { if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; ctx->enc_count = ctx->new_count; ctx->enc_packmode = ctx->new_packmode; ctx->enc_type = *ts; ctx->is_complex = got_Z; } ++ts; ctx->new_count = 1; got_Z = 0; break; case ':': ++ts; while(*ts != ':') ++ts; ++ts; break; case '(': if (!__pyx_buffmt_parse_array(ctx, &ts)) return NULL; break; default: { int number = __Pyx_BufFmt_ExpectNumber(&ts); if (number == -1) return NULL; ctx->new_count = (size_t)number; } } } } static CYTHON_INLINE void __Pyx_ZeroBuffer(Py_buffer* buf) { buf->buf = NULL; buf->obj = NULL; buf->strides = __Pyx_zeros; buf->shape = __Pyx_zeros; buf->suboffsets = __Pyx_minusones; } static CYTHON_INLINE int __Pyx_GetBufferAndValidate( Py_buffer* buf, PyObject* obj, __Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack) { if (obj == Py_None || obj == NULL) { __Pyx_ZeroBuffer(buf); return 0; } buf->buf = NULL; if (__Pyx_GetBuffer(obj, buf, flags) == -1) goto fail; if (buf->ndim != nd) { PyErr_Format(PyExc_ValueError, "Buffer has wrong number of dimensions (expected %d, got %d)", nd, buf->ndim); goto fail; } if (!cast) { __Pyx_BufFmt_Context ctx; __Pyx_BufFmt_Init(&ctx, stack, dtype); if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail; } if ((unsigned)buf->itemsize != dtype->size) { PyErr_Format(PyExc_ValueError, "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "d byte%s) does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "d byte%s)", buf->itemsize, (buf->itemsize > 1) ? "s" : "", dtype->name, (Py_ssize_t)dtype->size, (dtype->size > 1) ? "s" : ""); goto fail; } if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones; return 0; fail:; __Pyx_ZeroBuffer(buf); return -1; } static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) { if (info->buf == NULL) return; if (info->suboffsets == __Pyx_minusones) info->suboffsets = NULL; __Pyx_ReleaseBuffer(info); } static void __Pyx_RaiseBufferFallbackError(void) { PyErr_SetString(PyExc_ValueError, "Buffer acquisition failed on assignment; and then reacquiring the old buffer failed too!"); } static void __Pyx_RaiseBufferIndexError(int axis) { PyErr_Format(PyExc_IndexError, "Out of bounds on buffer access (axis %d)", axis); } static CYTHON_INLINE int __Pyx_PyObject_Append(PyObject* L, PyObject* x) { if (likely(PyList_CheckExact(L))) { if (unlikely(__Pyx_PyList_Append(L, x) < 0)) return -1; } else { PyObject* retval = __Pyx_PyObject_CallMethod1(L, __pyx_n_s_append, x); if (unlikely(!retval)) return -1; Py_DECREF(retval); } return 0; } static CYTHON_INLINE long __Pyx_div_long(long a, long b) { long q = a / b; long r = a - q*b; q -= ((r != 0) & ((r ^ b) < 0)); return q; } static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno, CYTHON_UNUSED int lineno, CYTHON_UNUSED const char *filename, int full_traceback) { PyObject *old_exc, *old_val, *old_tb; PyObject *ctx; __Pyx_ErrFetch(&old_exc, &old_val, &old_tb); if (full_traceback) { Py_XINCREF(old_exc); Py_XINCREF(old_val); Py_XINCREF(old_tb); __Pyx_ErrRestore(old_exc, old_val, old_tb); PyErr_PrintEx(1); } #if PY_MAJOR_VERSION < 3 ctx = PyString_FromString(name); #else ctx = PyUnicode_FromString(name); #endif __Pyx_ErrRestore(old_exc, old_val, old_tb); if (!ctx) { PyErr_WriteUnraisable(Py_None); } else { PyErr_WriteUnraisable(ctx); Py_DECREF(ctx); } } static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) { PyErr_Format(PyExc_TypeError, "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)", name, type->tp_name, Py_TYPE(obj)->tp_name); } static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, const char *name, int exact) { if (unlikely(!type)) { PyErr_SetString(PyExc_SystemError, "Missing type object"); return 0; } if (none_allowed && obj == Py_None) return 1; else if (exact) { if (likely(Py_TYPE(obj) == type)) return 1; #if PY_MAJOR_VERSION == 2 else if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1; #endif } else { if (likely(PyObject_TypeCheck(obj, type))) return 1; } __Pyx_RaiseArgumentTypeInvalid(name, obj, type); return 0; } static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); } static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { PyObject* value = __Pyx_PyObject_GetAttrStr(module, name); if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) { PyErr_Format(PyExc_ImportError, #if PY_MAJOR_VERSION < 3 "cannot import name %.230s", PyString_AS_STRING(name)); #else "cannot import name %S", name); #endif } return value; } #if PY_MAJOR_VERSION < 3 static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags) { #if PY_VERSION_HEX >= 0x02060000 if (PyObject_CheckBuffer(obj)) return PyObject_GetBuffer(obj, view, flags); #endif if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) return __pyx_pw_5numpy_7ndarray_1__getbuffer__(obj, view, flags); #if PY_VERSION_HEX < 0x02060000 if (obj->ob_type->tp_dict) { PyObject *getbuffer_cobj = PyObject_GetItem( obj->ob_type->tp_dict, __pyx_n_s_pyx_getbuffer); if (getbuffer_cobj) { getbufferproc func = (getbufferproc) PyCObject_AsVoidPtr(getbuffer_cobj); Py_DECREF(getbuffer_cobj); if (!func) goto fail; return func(obj, view, flags); } else { PyErr_Clear(); } } #endif PyErr_Format(PyExc_TypeError, "'%.200s' does not have the buffer interface", Py_TYPE(obj)->tp_name); #if PY_VERSION_HEX < 0x02060000 fail: #endif return -1; } static void __Pyx_ReleaseBuffer(Py_buffer *view) { PyObject *obj = view->obj; if (!obj) return; #if PY_VERSION_HEX >= 0x02060000 if (PyObject_CheckBuffer(obj)) { PyBuffer_Release(view); return; } #endif if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) { __pyx_pw_5numpy_7ndarray_3__releasebuffer__(obj, view); return; } #if PY_VERSION_HEX < 0x02060000 if (obj->ob_type->tp_dict) { PyObject *releasebuffer_cobj = PyObject_GetItem( obj->ob_type->tp_dict, __pyx_n_s_pyx_releasebuffer); if (releasebuffer_cobj) { releasebufferproc func = (releasebufferproc) PyCObject_AsVoidPtr(releasebuffer_cobj); Py_DECREF(releasebuffer_cobj); if (!func) goto fail; func(obj, view); return; } else { PyErr_Clear(); } } #endif goto nofail; #if PY_VERSION_HEX < 0x02060000 fail: #endif PyErr_WriteUnraisable(obj); nofail: Py_DECREF(obj); view->obj = NULL; } #endif /* PY_MAJOR_VERSION < 3 */ static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { PyObject *empty_list = 0; PyObject *module = 0; PyObject *global_dict = 0; PyObject *empty_dict = 0; PyObject *list; #if PY_VERSION_HEX < 0x03030000 PyObject *py_import; py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); if (!py_import) goto bad; #endif if (from_list) list = from_list; else { empty_list = PyList_New(0); if (!empty_list) goto bad; list = empty_list; } global_dict = PyModule_GetDict(__pyx_m); if (!global_dict) goto bad; empty_dict = PyDict_New(); if (!empty_dict) goto bad; #if PY_VERSION_HEX >= 0x02050000 { #if PY_MAJOR_VERSION >= 3 if (level == -1) { if (strchr(__Pyx_MODULE_NAME, '.')) { #if PY_VERSION_HEX < 0x03030000 PyObject *py_level = PyInt_FromLong(1); if (!py_level) goto bad; module = PyObject_CallFunctionObjArgs(py_import, name, global_dict, empty_dict, list, py_level, NULL); Py_DECREF(py_level); #else module = PyImport_ImportModuleLevelObject( name, global_dict, empty_dict, list, 1); #endif if (!module) { if (!PyErr_ExceptionMatches(PyExc_ImportError)) goto bad; PyErr_Clear(); } } level = 0; /* try absolute import on failure */ } #endif if (!module) { #if PY_VERSION_HEX < 0x03030000 PyObject *py_level = PyInt_FromLong(level); if (!py_level) goto bad; module = PyObject_CallFunctionObjArgs(py_import, name, global_dict, empty_dict, list, py_level, NULL); Py_DECREF(py_level); #else module = PyImport_ImportModuleLevelObject( name, global_dict, empty_dict, list, level); #endif } } #else if (level>0) { PyErr_SetString(PyExc_RuntimeError, "Relative import is not supported for Python <=2.4."); goto bad; } module = PyObject_CallFunctionObjArgs(py_import, name, global_dict, empty_dict, list, NULL); #endif bad: #if PY_VERSION_HEX < 0x03030000 Py_XDECREF(py_import); #endif Py_XDECREF(empty_list); Py_XDECREF(empty_dict); return module; } static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { const long neg_one = (long) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(long) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(long) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); } else if (sizeof(long) <= sizeof(unsigned long long)) { return PyLong_FromUnsignedLongLong((unsigned long long) value); } } else { if (sizeof(long) <= sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(long) <= sizeof(long long)) { return PyLong_FromLongLong((long long) value); } } { int one = 1; int little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&value; return _PyLong_FromByteArray(bytes, sizeof(long), little, !is_unsigned); } } #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func) \ { \ func_type value = func(x); \ if (sizeof(target_type) < sizeof(func_type)) { \ if (unlikely(value != (func_type) (target_type) value)) { \ func_type zero = 0; \ PyErr_SetString(PyExc_OverflowError, \ (is_unsigned && unlikely(value < zero)) ? \ "can't convert negative value to " #target_type : \ "value too large to convert to " #target_type); \ return (target_type) -1; \ } \ } \ return (target_type) value; \ } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { const int neg_one = (int) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(int) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to int"); return (int) -1; } return (int) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(int)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (int) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to int"); return (int) -1; } if (sizeof(int) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(int, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(int) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(int, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(int)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(int) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(int) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(int) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(int, long, PyLong_AsLong) } else if (sizeof(int) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(int, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else int val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (int) -1; } } else { int val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (int) -1; val = __Pyx_PyInt_As_int(tmp); Py_DECREF(tmp); return val; } } static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { const int neg_one = (int) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(int) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(int) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); } else if (sizeof(int) <= sizeof(unsigned long long)) { return PyLong_FromUnsignedLongLong((unsigned long long) value); } } else { if (sizeof(int) <= sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(int) <= sizeof(long long)) { return PyLong_FromLongLong((long long) value); } } { int one = 1; int little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&value; return _PyLong_FromByteArray(bytes, sizeof(int), little, !is_unsigned); } } #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return ::std::complex< double >(x, y); } #else static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return x + y*(__pyx_t_double_complex)_Complex_I; } #endif #else static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { __pyx_t_double_complex z; z.real = x; z.imag = y; return z; } #endif #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex a, __pyx_t_double_complex b) { return (a.real == b.real) && (a.imag == b.imag); } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; z.real = a.real + b.real; z.imag = a.imag + b.imag; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; z.real = a.real - b.real; z.imag = a.imag - b.imag; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; z.real = a.real * b.real - a.imag * b.imag; z.imag = a.real * b.imag + a.imag * b.real; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; double denom = b.real * b.real + b.imag * b.imag; z.real = (a.real * b.real + a.imag * b.imag) / denom; z.imag = (a.imag * b.real - a.real * b.imag) / denom; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex a) { __pyx_t_double_complex z; z.real = -a.real; z.imag = -a.imag; return z; } static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex a) { return (a.real == 0) && (a.imag == 0); } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex a) { __pyx_t_double_complex z; z.real = a.real; z.imag = -a.imag; return z; } #if 1 static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex z) { #if !defined(HAVE_HYPOT) || defined(_MSC_VER) return sqrt(z.real*z.real + z.imag*z.imag); #else return hypot(z.real, z.imag); #endif } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; double r, lnr, theta, z_r, z_theta; if (b.imag == 0 && b.real == (int)b.real) { if (b.real < 0) { double denom = a.real * a.real + a.imag * a.imag; a.real = a.real / denom; a.imag = -a.imag / denom; b.real = -b.real; } switch ((int)b.real) { case 0: z.real = 1; z.imag = 0; return z; case 1: return a; case 2: z = __Pyx_c_prod(a, a); return __Pyx_c_prod(a, a); case 3: z = __Pyx_c_prod(a, a); return __Pyx_c_prod(z, a); case 4: z = __Pyx_c_prod(a, a); return __Pyx_c_prod(z, z); } } if (a.imag == 0) { if (a.real == 0) { return a; } r = a.real; theta = 0; } else { r = __Pyx_c_abs(a); theta = atan2(a.imag, a.real); } lnr = log(r); z_r = exp(lnr * b.real - theta * b.imag); z_theta = theta * b.real + lnr * b.imag; z.real = z_r * cos(z_theta); z.imag = z_r * sin(z_theta); return z; } #endif #endif static CYTHON_INLINE long __Pyx_pow_long(long b, long e) { long t = b; switch (e) { case 3: t *= b; case 2: t *= b; case 1: return t; case 0: return 1; } #if 1 if (unlikely(e<0)) return 0; #endif t = 1; while (likely(e)) { t *= (b * (e&1)) | ((~e)&1); /* 1 or b */ b *= b; e >>= 1; } return t; } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { const long neg_one = (long) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(long) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to long"); return (long) -1; } return (long) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(long)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (long) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to long"); return (long) -1; } if (sizeof(long) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(long, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(long) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(long, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(long)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(long) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(long) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(long) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(long, long, PyLong_AsLong) } else if (sizeof(long) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(long, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else long val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (long) -1; } } else { long val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (long) -1; val = __Pyx_PyInt_As_long(tmp); Py_DECREF(tmp); return val; } } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE size_t __Pyx_PyInt_As_size_t(PyObject *x) { const size_t neg_one = (size_t) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(size_t) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(size_t, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to size_t"); return (size_t) -1; } return (size_t) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(size_t)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (size_t) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to size_t"); return (size_t) -1; } if (sizeof(size_t) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(size_t, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(size_t) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(size_t, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(size_t)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(size_t) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(size_t) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(size_t) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(size_t, long, PyLong_AsLong) } else if (sizeof(size_t) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(size_t, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else size_t val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (size_t) -1; } } else { size_t val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (size_t) -1; val = __Pyx_PyInt_As_size_t(tmp); Py_DECREF(tmp); return val; } } #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return ::std::complex< float >(x, y); } #else static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return x + y*(__pyx_t_float_complex)_Complex_I; } #endif #else static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { __pyx_t_float_complex z; z.real = x; z.imag = y; return z; } #endif #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex a, __pyx_t_float_complex b) { return (a.real == b.real) && (a.imag == b.imag); } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; z.real = a.real + b.real; z.imag = a.imag + b.imag; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; z.real = a.real - b.real; z.imag = a.imag - b.imag; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; z.real = a.real * b.real - a.imag * b.imag; z.imag = a.real * b.imag + a.imag * b.real; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; float denom = b.real * b.real + b.imag * b.imag; z.real = (a.real * b.real + a.imag * b.imag) / denom; z.imag = (a.imag * b.real - a.real * b.imag) / denom; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex a) { __pyx_t_float_complex z; z.real = -a.real; z.imag = -a.imag; return z; } static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex a) { return (a.real == 0) && (a.imag == 0); } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex a) { __pyx_t_float_complex z; z.real = a.real; z.imag = -a.imag; return z; } #if 1 static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex z) { #if !defined(HAVE_HYPOT) || defined(_MSC_VER) return sqrtf(z.real*z.real + z.imag*z.imag); #else return hypotf(z.real, z.imag); #endif } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; float r, lnr, theta, z_r, z_theta; if (b.imag == 0 && b.real == (int)b.real) { if (b.real < 0) { float denom = a.real * a.real + a.imag * a.imag; a.real = a.real / denom; a.imag = -a.imag / denom; b.real = -b.real; } switch ((int)b.real) { case 0: z.real = 1; z.imag = 0; return z; case 1: return a; case 2: z = __Pyx_c_prodf(a, a); return __Pyx_c_prodf(a, a); case 3: z = __Pyx_c_prodf(a, a); return __Pyx_c_prodf(z, a); case 4: z = __Pyx_c_prodf(a, a); return __Pyx_c_prodf(z, z); } } if (a.imag == 0) { if (a.real == 0) { return a; } r = a.real; theta = 0; } else { r = __Pyx_c_absf(a); theta = atan2f(a.imag, a.real); } lnr = logf(r); z_r = expf(lnr * b.real - theta * b.imag); z_theta = theta * b.real + lnr * b.imag; z.real = z_r * cosf(z_theta); z.imag = z_r * sinf(z_theta); return z; } #endif #endif static int __Pyx_check_binary_version(void) { char ctversion[4], rtversion[4]; PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) { char message[200]; PyOS_snprintf(message, sizeof(message), "compiletime version %s of module '%.100s' " "does not match runtime version %s", ctversion, __Pyx_MODULE_NAME, rtversion); #if PY_VERSION_HEX < 0x02050000 return PyErr_Warn(NULL, message); #else return PyErr_WarnEx(NULL, message, 1); #endif } return 0; } #ifndef __PYX_HAVE_RT_ImportModule #define __PYX_HAVE_RT_ImportModule static PyObject *__Pyx_ImportModule(const char *name) { PyObject *py_name = 0; PyObject *py_module = 0; py_name = __Pyx_PyIdentifier_FromString(name); if (!py_name) goto bad; py_module = PyImport_Import(py_name); Py_DECREF(py_name); return py_module; bad: Py_XDECREF(py_name); return 0; } #endif #ifndef __PYX_HAVE_RT_ImportType #define __PYX_HAVE_RT_ImportType static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict) { PyObject *py_module = 0; PyObject *result = 0; PyObject *py_name = 0; char warning[200]; Py_ssize_t basicsize; #ifdef Py_LIMITED_API PyObject *py_basicsize; #endif py_module = __Pyx_ImportModule(module_name); if (!py_module) goto bad; py_name = __Pyx_PyIdentifier_FromString(class_name); if (!py_name) goto bad; result = PyObject_GetAttr(py_module, py_name); Py_DECREF(py_name); py_name = 0; Py_DECREF(py_module); py_module = 0; if (!result) goto bad; if (!PyType_Check(result)) { PyErr_Format(PyExc_TypeError, "%.200s.%.200s is not a type object", module_name, class_name); goto bad; } #ifndef Py_LIMITED_API basicsize = ((PyTypeObject *)result)->tp_basicsize; #else py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); if (!py_basicsize) goto bad; basicsize = PyLong_AsSsize_t(py_basicsize); Py_DECREF(py_basicsize); py_basicsize = 0; if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) goto bad; #endif if (!strict && (size_t)basicsize > size) { PyOS_snprintf(warning, sizeof(warning), "%s.%s size changed, may indicate binary incompatibility", module_name, class_name); #if PY_VERSION_HEX < 0x02050000 if (PyErr_Warn(NULL, warning) < 0) goto bad; #else if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad; #endif } else if ((size_t)basicsize != size) { PyErr_Format(PyExc_ValueError, "%.200s.%.200s has the wrong size, try recompiling", module_name, class_name); goto bad; } return (PyTypeObject *)result; bad: Py_XDECREF(py_module); Py_XDECREF(result); return NULL; } #endif static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { int start = 0, mid = 0, end = count - 1; if (end >= 0 && code_line > entries[end].code_line) { return count; } while (start < end) { mid = (start + end) / 2; if (code_line < entries[mid].code_line) { end = mid; } else if (code_line > entries[mid].code_line) { start = mid + 1; } else { return mid; } } if (code_line <= entries[mid].code_line) { return mid; } else { return mid + 1; } } static PyCodeObject *__pyx_find_code_object(int code_line) { PyCodeObject* code_object; int pos; if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) { return NULL; } pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) { return NULL; } code_object = __pyx_code_cache.entries[pos].code_object; Py_INCREF(code_object); return code_object; } static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { int pos, i; __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries; if (unlikely(!code_line)) { return; } if (unlikely(!entries)) { entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry)); if (likely(entries)) { __pyx_code_cache.entries = entries; __pyx_code_cache.max_count = 64; __pyx_code_cache.count = 1; entries[0].code_line = code_line; entries[0].code_object = code_object; Py_INCREF(code_object); } return; } pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) { PyCodeObject* tmp = entries[pos].code_object; entries[pos].code_object = code_object; Py_DECREF(tmp); return; } if (__pyx_code_cache.count == __pyx_code_cache.max_count) { int new_max = __pyx_code_cache.max_count + 64; entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc( __pyx_code_cache.entries, new_max*sizeof(__Pyx_CodeObjectCacheEntry)); if (unlikely(!entries)) { return; } __pyx_code_cache.entries = entries; __pyx_code_cache.max_count = new_max; } for (i=__pyx_code_cache.count; i>pos; i--) { entries[i] = entries[i-1]; } entries[pos].code_line = code_line; entries[pos].code_object = code_object; __pyx_code_cache.count++; Py_INCREF(code_object); } #include "compile.h" #include "frameobject.h" #include "traceback.h" static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = 0; PyObject *py_srcfile = 0; PyObject *py_funcname = 0; #if PY_MAJOR_VERSION < 3 py_srcfile = PyString_FromString(filename); #else py_srcfile = PyUnicode_FromString(filename); #endif if (!py_srcfile) goto bad; if (c_line) { #if PY_MAJOR_VERSION < 3 py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); #else py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); #endif } else { #if PY_MAJOR_VERSION < 3 py_funcname = PyString_FromString(funcname); #else py_funcname = PyUnicode_FromString(funcname); #endif } if (!py_funcname) goto bad; py_code = __Pyx_PyCode_New( 0, /*int argcount,*/ 0, /*int kwonlyargcount,*/ 0, /*int nlocals,*/ 0, /*int stacksize,*/ 0, /*int flags,*/ __pyx_empty_bytes, /*PyObject *code,*/ __pyx_empty_tuple, /*PyObject *consts,*/ __pyx_empty_tuple, /*PyObject *names,*/ __pyx_empty_tuple, /*PyObject *varnames,*/ __pyx_empty_tuple, /*PyObject *freevars,*/ __pyx_empty_tuple, /*PyObject *cellvars,*/ py_srcfile, /*PyObject *filename,*/ py_funcname, /*PyObject *name,*/ py_line, /*int firstlineno,*/ __pyx_empty_bytes /*PyObject *lnotab*/ ); Py_DECREF(py_srcfile); Py_DECREF(py_funcname); return py_code; bad: Py_XDECREF(py_srcfile); Py_XDECREF(py_funcname); return NULL; } static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = 0; PyObject *py_globals = 0; PyFrameObject *py_frame = 0; py_code = __pyx_find_code_object(c_line ? c_line : py_line); if (!py_code) { py_code = __Pyx_CreateCodeObjectForTraceback( funcname, c_line, py_line, filename); if (!py_code) goto bad; __pyx_insert_code_object(c_line ? c_line : py_line, py_code); } py_globals = PyModule_GetDict(__pyx_m); if (!py_globals) goto bad; py_frame = PyFrame_New( PyThreadState_GET(), /*PyThreadState *tstate,*/ py_code, /*PyCodeObject *code,*/ py_globals, /*PyObject *globals,*/ 0 /*PyObject *locals*/ ); if (!py_frame) goto bad; py_frame->f_lineno = py_line; PyTraceBack_Here(py_frame); bad: Py_XDECREF(py_code); Py_XDECREF(py_frame); } static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { while (t->p) { #if PY_MAJOR_VERSION < 3 if (t->is_unicode) { *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL); } else if (t->intern) { *t->p = PyString_InternFromString(t->s); } else { *t->p = PyString_FromStringAndSize(t->s, t->n - 1); } #else /* Python 3+ has unicode identifiers */ if (t->is_unicode | t->is_str) { if (t->intern) { *t->p = PyUnicode_InternFromString(t->s); } else if (t->encoding) { *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL); } else { *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1); } } else { *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1); } #endif if (!*t->p) return -1; ++t; } return 0; } static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(char* c_str) { return __Pyx_PyUnicode_FromStringAndSize(c_str, strlen(c_str)); } static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) { Py_ssize_t ignore; return __Pyx_PyObject_AsStringAndSize(o, &ignore); } static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT if ( #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII __Pyx_sys_getdefaultencoding_not_ascii && #endif PyUnicode_Check(o)) { #if PY_VERSION_HEX < 0x03030000 char* defenc_c; PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL); if (!defenc) return NULL; defenc_c = PyBytes_AS_STRING(defenc); #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII { char* end = defenc_c + PyBytes_GET_SIZE(defenc); char* c; for (c = defenc_c; c < end; c++) { if ((unsigned char) (*c) >= 128) { PyUnicode_AsASCIIString(o); return NULL; } } } #endif /*__PYX_DEFAULT_STRING_ENCODING_IS_ASCII*/ *length = PyBytes_GET_SIZE(defenc); return defenc_c; #else /* PY_VERSION_HEX < 0x03030000 */ if (PyUnicode_READY(o) == -1) return NULL; #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII if (PyUnicode_IS_ASCII(o)) { *length = PyUnicode_GET_DATA_SIZE(o); return PyUnicode_AsUTF8(o); } else { PyUnicode_AsASCIIString(o); return NULL; } #else /* __PYX_DEFAULT_STRING_ENCODING_IS_ASCII */ return PyUnicode_AsUTF8AndSize(o, length); #endif /* __PYX_DEFAULT_STRING_ENCODING_IS_ASCII */ #endif /* PY_VERSION_HEX < 0x03030000 */ } else #endif /* __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT */ #if !CYTHON_COMPILING_IN_PYPY #if PY_VERSION_HEX >= 0x02060000 if (PyByteArray_Check(o)) { *length = PyByteArray_GET_SIZE(o); return PyByteArray_AS_STRING(o); } else #endif #endif { char* result; int r = PyBytes_AsStringAndSize(o, &result, length); if (unlikely(r < 0)) { return NULL; } else { return result; } } } static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { int is_true = x == Py_True; if (is_true | (x == Py_False) | (x == Py_None)) return is_true; else return PyObject_IsTrue(x); } static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x) { PyNumberMethods *m; const char *name = NULL; PyObject *res = NULL; #if PY_MAJOR_VERSION < 3 if (PyInt_Check(x) || PyLong_Check(x)) #else if (PyLong_Check(x)) #endif return Py_INCREF(x), x; m = Py_TYPE(x)->tp_as_number; #if PY_MAJOR_VERSION < 3 if (m && m->nb_int) { name = "int"; res = PyNumber_Int(x); } else if (m && m->nb_long) { name = "long"; res = PyNumber_Long(x); } #else if (m && m->nb_int) { name = "int"; res = PyNumber_Long(x); } #endif if (res) { #if PY_MAJOR_VERSION < 3 if (!PyInt_Check(res) && !PyLong_Check(res)) { #else if (!PyLong_Check(res)) { #endif PyErr_Format(PyExc_TypeError, "__%.4s__ returned non-%.4s (type %.200s)", name, name, Py_TYPE(res)->tp_name); Py_DECREF(res); return NULL; } } else if (!PyErr_Occurred()) { PyErr_SetString(PyExc_TypeError, "an integer is required"); } return res; } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { Py_ssize_t ival; PyObject *x; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_CheckExact(b))) return PyInt_AS_LONG(b); #endif if (likely(PyLong_CheckExact(b))) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS switch (Py_SIZE(b)) { case -1: return -(sdigit)((PyLongObject*)b)->ob_digit[0]; case 0: return 0; case 1: return ((PyLongObject*)b)->ob_digit[0]; } #endif #endif #if PY_VERSION_HEX < 0x02060000 return PyInt_AsSsize_t(b); #else return PyLong_AsSsize_t(b); #endif } x = PyNumber_Index(b); if (!x) return -1; ival = PyInt_AsSsize_t(x); Py_DECREF(x); return ival; } static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { #if PY_VERSION_HEX < 0x02050000 if (ival <= LONG_MAX) return PyInt_FromLong((long)ival); else { unsigned char *bytes = (unsigned char *) &ival; int one = 1; int little = (int)*(unsigned char*)&one; return _PyLong_FromByteArray(bytes, sizeof(size_t), little, 0); } #else return PyInt_FromSize_t(ival); #endif } #endif /* Py_PYTHON_H */ healpy-1.8.1/healpy/src/_pixelfunc.cpp0000644000175000017500000117711712346122733020204 0ustar zoncazonca00000000000000/* Generated by Cython 0.20.1 on Wed Jun 11 11:54:03 2014 */ #define PY_SSIZE_T_CLEAN #ifndef CYTHON_USE_PYLONG_INTERNALS #ifdef PYLONG_BITS_IN_DIGIT #define CYTHON_USE_PYLONG_INTERNALS 0 #else #include "pyconfig.h" #ifdef PYLONG_BITS_IN_DIGIT #define CYTHON_USE_PYLONG_INTERNALS 1 #else #define CYTHON_USE_PYLONG_INTERNALS 0 #endif #endif #endif #include "Python.h" #ifndef Py_PYTHON_H #error Python headers needed to compile C extensions, please install development version of Python. #elif PY_VERSION_HEX < 0x02040000 #error Cython requires Python 2.4+. #else #define CYTHON_ABI "0_20_1" #include /* For offsetof */ #ifndef offsetof #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) #endif #if !defined(WIN32) && !defined(MS_WINDOWS) #ifndef __stdcall #define __stdcall #endif #ifndef __cdecl #define __cdecl #endif #ifndef __fastcall #define __fastcall #endif #endif #ifndef DL_IMPORT #define DL_IMPORT(t) t #endif #ifndef DL_EXPORT #define DL_EXPORT(t) t #endif #ifndef PY_LONG_LONG #define PY_LONG_LONG LONG_LONG #endif #ifndef Py_HUGE_VAL #define Py_HUGE_VAL HUGE_VAL #endif #ifdef PYPY_VERSION #define CYTHON_COMPILING_IN_PYPY 1 #define CYTHON_COMPILING_IN_CPYTHON 0 #else #define CYTHON_COMPILING_IN_PYPY 0 #define CYTHON_COMPILING_IN_CPYTHON 1 #endif #if CYTHON_COMPILING_IN_PYPY #define Py_OptimizeFlag 0 #endif #if PY_VERSION_HEX < 0x02050000 typedef int Py_ssize_t; #define PY_SSIZE_T_MAX INT_MAX #define PY_SSIZE_T_MIN INT_MIN #define PY_FORMAT_SIZE_T "" #define CYTHON_FORMAT_SSIZE_T "" #define PyInt_FromSsize_t(z) PyInt_FromLong(z) #define PyInt_AsSsize_t(o) __Pyx_PyInt_As_int(o) #define PyNumber_Index(o) ((PyNumber_Check(o) && !PyFloat_Check(o)) ? PyNumber_Int(o) : \ (PyErr_Format(PyExc_TypeError, \ "expected index value, got %.200s", Py_TYPE(o)->tp_name), \ (PyObject*)0)) #define __Pyx_PyIndex_Check(o) (PyNumber_Check(o) && !PyFloat_Check(o) && \ !PyComplex_Check(o)) #define PyIndex_Check __Pyx_PyIndex_Check #define PyErr_WarnEx(category, message, stacklevel) PyErr_Warn(category, message) #define __PYX_BUILD_PY_SSIZE_T "i" #else #define __PYX_BUILD_PY_SSIZE_T "n" #define CYTHON_FORMAT_SSIZE_T "z" #define __Pyx_PyIndex_Check PyIndex_Check #endif #if PY_VERSION_HEX < 0x02060000 #define Py_REFCNT(ob) (((PyObject*)(ob))->ob_refcnt) #define Py_TYPE(ob) (((PyObject*)(ob))->ob_type) #define Py_SIZE(ob) (((PyVarObject*)(ob))->ob_size) #define PyVarObject_HEAD_INIT(type, size) \ PyObject_HEAD_INIT(type) size, #define PyType_Modified(t) typedef struct { void *buf; PyObject *obj; Py_ssize_t len; Py_ssize_t itemsize; int readonly; int ndim; char *format; Py_ssize_t *shape; Py_ssize_t *strides; Py_ssize_t *suboffsets; void *internal; } Py_buffer; #define PyBUF_SIMPLE 0 #define PyBUF_WRITABLE 0x0001 #define PyBUF_FORMAT 0x0004 #define PyBUF_ND 0x0008 #define PyBUF_STRIDES (0x0010 | PyBUF_ND) #define PyBUF_C_CONTIGUOUS (0x0020 | PyBUF_STRIDES) #define PyBUF_F_CONTIGUOUS (0x0040 | PyBUF_STRIDES) #define PyBUF_ANY_CONTIGUOUS (0x0080 | PyBUF_STRIDES) #define PyBUF_INDIRECT (0x0100 | PyBUF_STRIDES) #define PyBUF_RECORDS (PyBUF_STRIDES | PyBUF_FORMAT | PyBUF_WRITABLE) #define PyBUF_FULL (PyBUF_INDIRECT | PyBUF_FORMAT | PyBUF_WRITABLE) typedef int (*getbufferproc)(PyObject *, Py_buffer *, int); typedef void (*releasebufferproc)(PyObject *, Py_buffer *); #endif #if PY_MAJOR_VERSION < 3 #define __Pyx_BUILTIN_MODULE_NAME "__builtin__" #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \ PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) #define __Pyx_DefaultClassType PyClass_Type #else #define __Pyx_BUILTIN_MODULE_NAME "builtins" #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \ PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) #define __Pyx_DefaultClassType PyType_Type #endif #if PY_VERSION_HEX < 0x02060000 #define PyUnicode_FromString(s) PyUnicode_Decode(s, strlen(s), "UTF-8", "strict") #endif #if PY_MAJOR_VERSION >= 3 #define Py_TPFLAGS_CHECKTYPES 0 #define Py_TPFLAGS_HAVE_INDEX 0 #endif #if (PY_VERSION_HEX < 0x02060000) || (PY_MAJOR_VERSION >= 3) #define Py_TPFLAGS_HAVE_NEWBUFFER 0 #endif #if PY_VERSION_HEX < 0x02060000 #define Py_TPFLAGS_HAVE_VERSION_TAG 0 #endif #if PY_VERSION_HEX < 0x02060000 && !defined(Py_TPFLAGS_IS_ABSTRACT) #define Py_TPFLAGS_IS_ABSTRACT 0 #endif #if PY_VERSION_HEX < 0x030400a1 && !defined(Py_TPFLAGS_HAVE_FINALIZE) #define Py_TPFLAGS_HAVE_FINALIZE 0 #endif #if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND) #define CYTHON_PEP393_ENABLED 1 #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ? \ 0 : _PyUnicode_Ready((PyObject *)(op))) #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u) #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i) #define __Pyx_PyUnicode_KIND(u) PyUnicode_KIND(u) #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u) #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i) #else #define CYTHON_PEP393_ENABLED 0 #define __Pyx_PyUnicode_READY(op) (0) #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u) #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i])) #define __Pyx_PyUnicode_KIND(u) (sizeof(Py_UNICODE)) #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u)) #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i])) #endif #if CYTHON_COMPILING_IN_PYPY #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b) #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b) #else #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b) #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ? \ PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b)) #endif #define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b)) #define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b)) #if PY_MAJOR_VERSION >= 3 #define __Pyx_PyString_Format(a, b) PyUnicode_Format(a, b) #else #define __Pyx_PyString_Format(a, b) PyString_Format(a, b) #endif #if PY_MAJOR_VERSION >= 3 #define PyBaseString_Type PyUnicode_Type #define PyStringObject PyUnicodeObject #define PyString_Type PyUnicode_Type #define PyString_Check PyUnicode_Check #define PyString_CheckExact PyUnicode_CheckExact #endif #if PY_VERSION_HEX < 0x02060000 #define PyBytesObject PyStringObject #define PyBytes_Type PyString_Type #define PyBytes_Check PyString_Check #define PyBytes_CheckExact PyString_CheckExact #define PyBytes_FromString PyString_FromString #define PyBytes_FromStringAndSize PyString_FromStringAndSize #define PyBytes_FromFormat PyString_FromFormat #define PyBytes_DecodeEscape PyString_DecodeEscape #define PyBytes_AsString PyString_AsString #define PyBytes_AsStringAndSize PyString_AsStringAndSize #define PyBytes_Size PyString_Size #define PyBytes_AS_STRING PyString_AS_STRING #define PyBytes_GET_SIZE PyString_GET_SIZE #define PyBytes_Repr PyString_Repr #define PyBytes_Concat PyString_Concat #define PyBytes_ConcatAndDel PyString_ConcatAndDel #endif #if PY_MAJOR_VERSION >= 3 #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj) #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj) #else #define __Pyx_PyBaseString_Check(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj) || \ PyString_Check(obj) || PyUnicode_Check(obj)) #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj)) #endif #if PY_VERSION_HEX < 0x02060000 #define PySet_Check(obj) PyObject_TypeCheck(obj, &PySet_Type) #define PyFrozenSet_Check(obj) PyObject_TypeCheck(obj, &PyFrozenSet_Type) #endif #ifndef PySet_CheckExact #define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type) #endif #define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type) #if PY_MAJOR_VERSION >= 3 #define PyIntObject PyLongObject #define PyInt_Type PyLong_Type #define PyInt_Check(op) PyLong_Check(op) #define PyInt_CheckExact(op) PyLong_CheckExact(op) #define PyInt_FromString PyLong_FromString #define PyInt_FromUnicode PyLong_FromUnicode #define PyInt_FromLong PyLong_FromLong #define PyInt_FromSize_t PyLong_FromSize_t #define PyInt_FromSsize_t PyLong_FromSsize_t #define PyInt_AsLong PyLong_AsLong #define PyInt_AS_LONG PyLong_AS_LONG #define PyInt_AsSsize_t PyLong_AsSsize_t #define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask #define PyNumber_Int PyNumber_Long #endif #if PY_MAJOR_VERSION >= 3 #define PyBoolObject PyLongObject #endif #if PY_VERSION_HEX < 0x030200A4 typedef long Py_hash_t; #define __Pyx_PyInt_FromHash_t PyInt_FromLong #define __Pyx_PyInt_AsHash_t PyInt_AsLong #else #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t #define __Pyx_PyInt_AsHash_t PyInt_AsSsize_t #endif #if (PY_MAJOR_VERSION < 3) || (PY_VERSION_HEX >= 0x03010300) #define __Pyx_PySequence_GetSlice(obj, a, b) PySequence_GetSlice(obj, a, b) #define __Pyx_PySequence_SetSlice(obj, a, b, value) PySequence_SetSlice(obj, a, b, value) #define __Pyx_PySequence_DelSlice(obj, a, b) PySequence_DelSlice(obj, a, b) #else #define __Pyx_PySequence_GetSlice(obj, a, b) (unlikely(!(obj)) ? \ (PyErr_SetString(PyExc_SystemError, "null argument to internal routine"), (PyObject*)0) : \ (likely((obj)->ob_type->tp_as_mapping) ? (PySequence_GetSlice(obj, a, b)) : \ (PyErr_Format(PyExc_TypeError, "'%.200s' object is unsliceable", (obj)->ob_type->tp_name), (PyObject*)0))) #define __Pyx_PySequence_SetSlice(obj, a, b, value) (unlikely(!(obj)) ? \ (PyErr_SetString(PyExc_SystemError, "null argument to internal routine"), -1) : \ (likely((obj)->ob_type->tp_as_mapping) ? (PySequence_SetSlice(obj, a, b, value)) : \ (PyErr_Format(PyExc_TypeError, "'%.200s' object doesn't support slice assignment", (obj)->ob_type->tp_name), -1))) #define __Pyx_PySequence_DelSlice(obj, a, b) (unlikely(!(obj)) ? \ (PyErr_SetString(PyExc_SystemError, "null argument to internal routine"), -1) : \ (likely((obj)->ob_type->tp_as_mapping) ? (PySequence_DelSlice(obj, a, b)) : \ (PyErr_Format(PyExc_TypeError, "'%.200s' object doesn't support slice deletion", (obj)->ob_type->tp_name), -1))) #endif #if PY_MAJOR_VERSION >= 3 #define PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : PyInstanceMethod_New(func)) #endif #if PY_VERSION_HEX < 0x02050000 #define __Pyx_GetAttrString(o,n) PyObject_GetAttrString((o),((char *)(n))) #define __Pyx_SetAttrString(o,n,a) PyObject_SetAttrString((o),((char *)(n)),(a)) #define __Pyx_DelAttrString(o,n) PyObject_DelAttrString((o),((char *)(n))) #else #define __Pyx_GetAttrString(o,n) PyObject_GetAttrString((o),(n)) #define __Pyx_SetAttrString(o,n,a) PyObject_SetAttrString((o),(n),(a)) #define __Pyx_DelAttrString(o,n) PyObject_DelAttrString((o),(n)) #endif #if PY_VERSION_HEX < 0x02050000 #define __Pyx_NAMESTR(n) ((char *)(n)) #define __Pyx_DOCSTR(n) ((char *)(n)) #else #define __Pyx_NAMESTR(n) (n) #define __Pyx_DOCSTR(n) (n) #endif #ifndef CYTHON_INLINE #if defined(__GNUC__) #define CYTHON_INLINE __inline__ #elif defined(_MSC_VER) #define CYTHON_INLINE __inline #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L #define CYTHON_INLINE inline #else #define CYTHON_INLINE #endif #endif #ifndef CYTHON_RESTRICT #if defined(__GNUC__) #define CYTHON_RESTRICT __restrict__ #elif defined(_MSC_VER) && _MSC_VER >= 1400 #define CYTHON_RESTRICT __restrict #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L #define CYTHON_RESTRICT restrict #else #define CYTHON_RESTRICT #endif #endif #ifdef NAN #define __PYX_NAN() ((float) NAN) #else static CYTHON_INLINE float __PYX_NAN() { /* Initialize NaN. The sign is irrelevant, an exponent with all bits 1 and a nonzero mantissa means NaN. If the first bit in the mantissa is 1, it is a quiet NaN. */ float value; memset(&value, 0xFF, sizeof(value)); return value; } #endif #if PY_MAJOR_VERSION >= 3 #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) #else #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y) #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y) #endif #ifndef __PYX_EXTERN_C #ifdef __cplusplus #define __PYX_EXTERN_C extern "C" #else #define __PYX_EXTERN_C extern #endif #endif #if defined(WIN32) || defined(MS_WINDOWS) #define _USE_MATH_DEFINES #endif #include #define __PYX_HAVE__healpy___pixelfunc #define __PYX_HAVE_API__healpy___pixelfunc #include "string.h" #include "stdio.h" #include "stdlib.h" #include "numpy/arrayobject.h" #include "numpy/ufuncobject.h" #include #include "ios" #include "new" #include "stdexcept" #include "typeinfo" #include "stddef.h" #include "datatypes.h" #include "xcomplex.h" #include "arr.h" #include "rangeset.h" #include "vec3.h" #include "pointing.h" #include "healpix_base.h" #include "healpix_map.h" #include "alm.h" #ifdef _OPENMP #include #endif /* _OPENMP */ #ifdef PYREX_WITHOUT_ASSERTIONS #define CYTHON_WITHOUT_ASSERTIONS #endif #ifndef CYTHON_UNUSED # if defined(__GNUC__) # if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) # define CYTHON_UNUSED __attribute__ ((__unused__)) # else # define CYTHON_UNUSED # endif # elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) # define CYTHON_UNUSED __attribute__ ((__unused__)) # else # define CYTHON_UNUSED # endif #endif typedef struct {PyObject **p; char *s; const Py_ssize_t n; const char* encoding; const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; /*proto*/ #define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0 #define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT 0 #define __PYX_DEFAULT_STRING_ENCODING "" #define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString #define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize #define __Pyx_fits_Py_ssize_t(v, type, is_signed) ( \ (sizeof(type) < sizeof(Py_ssize_t)) || \ (sizeof(type) > sizeof(Py_ssize_t) && \ likely(v < (type)PY_SSIZE_T_MAX || \ v == (type)PY_SSIZE_T_MAX) && \ (!is_signed || likely(v > (type)PY_SSIZE_T_MIN || \ v == (type)PY_SSIZE_T_MIN))) || \ (sizeof(type) == sizeof(Py_ssize_t) && \ (is_signed || likely(v < (type)PY_SSIZE_T_MAX || \ v == (type)PY_SSIZE_T_MAX))) ) static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject*); static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); #define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s)) #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) #define __Pyx_PyBytes_FromString PyBytes_FromString #define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(char*); #if PY_MAJOR_VERSION < 3 #define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize #else #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize #endif #define __Pyx_PyObject_AsSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_AsUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_FromUString(s) __Pyx_PyObject_FromString((char*)s) #define __Pyx_PyBytes_FromUString(s) __Pyx_PyBytes_FromString((char*)s) #define __Pyx_PyByteArray_FromUString(s) __Pyx_PyByteArray_FromString((char*)s) #define __Pyx_PyStr_FromUString(s) __Pyx_PyStr_FromString((char*)s) #define __Pyx_PyUnicode_FromUString(s) __Pyx_PyUnicode_FromString((char*)s) #if PY_MAJOR_VERSION < 3 static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) { const Py_UNICODE *u_end = u; while (*u_end++) ; return u_end - u - 1; } #else #define __Pyx_Py_UNICODE_strlen Py_UNICODE_strlen #endif #define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u)) #define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode #define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode #define __Pyx_Owned_Py_None(b) (Py_INCREF(Py_None), Py_None) #define __Pyx_PyBool_FromLong(b) ((b) ? (Py_INCREF(Py_True), Py_True) : (Py_INCREF(Py_False), Py_False)) static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*); static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x); static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*); static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t); #if CYTHON_COMPILING_IN_CPYTHON #define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x)) #else #define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x) #endif #define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x)) #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII static int __Pyx_sys_getdefaultencoding_not_ascii; static int __Pyx_init_sys_getdefaultencoding_params(void) { PyObject* sys = NULL; PyObject* default_encoding = NULL; PyObject* ascii_chars_u = NULL; PyObject* ascii_chars_b = NULL; sys = PyImport_ImportModule("sys"); if (sys == NULL) goto bad; default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); if (default_encoding == NULL) goto bad; if (strcmp(PyBytes_AsString(default_encoding), "ascii") == 0) { __Pyx_sys_getdefaultencoding_not_ascii = 0; } else { const char* default_encoding_c = PyBytes_AS_STRING(default_encoding); char ascii_chars[128]; int c; for (c = 0; c < 128; c++) { ascii_chars[c] = c; } __Pyx_sys_getdefaultencoding_not_ascii = 1; ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL); if (ascii_chars_u == NULL) goto bad; ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL); if (ascii_chars_b == NULL || strncmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) { PyErr_Format( PyExc_ValueError, "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.", default_encoding_c); goto bad; } } Py_XDECREF(sys); Py_XDECREF(default_encoding); Py_XDECREF(ascii_chars_u); Py_XDECREF(ascii_chars_b); return 0; bad: Py_XDECREF(sys); Py_XDECREF(default_encoding); Py_XDECREF(ascii_chars_u); Py_XDECREF(ascii_chars_b); return -1; } #endif #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3 #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL) #else #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL) #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT static char* __PYX_DEFAULT_STRING_ENCODING; static int __Pyx_init_sys_getdefaultencoding_params(void) { PyObject* sys = NULL; PyObject* default_encoding = NULL; char* default_encoding_c; sys = PyImport_ImportModule("sys"); if (sys == NULL) goto bad; default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); if (default_encoding == NULL) goto bad; default_encoding_c = PyBytes_AS_STRING(default_encoding); __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c)); strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c); Py_DECREF(sys); Py_DECREF(default_encoding); return 0; bad: Py_XDECREF(sys); Py_XDECREF(default_encoding); return -1; } #endif #endif #ifdef __GNUC__ /* Test for GCC > 2.95 */ #if __GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)) #define likely(x) __builtin_expect(!!(x), 1) #define unlikely(x) __builtin_expect(!!(x), 0) #else /* __GNUC__ > 2 ... */ #define likely(x) (x) #define unlikely(x) (x) #endif /* __GNUC__ > 2 ... */ #else /* __GNUC__ */ #define likely(x) (x) #define unlikely(x) (x) #endif /* __GNUC__ */ static PyObject *__pyx_m; static PyObject *__pyx_d; static PyObject *__pyx_b; static PyObject *__pyx_empty_tuple; static PyObject *__pyx_empty_bytes; static int __pyx_lineno; static int __pyx_clineno = 0; static const char * __pyx_cfilenm= __FILE__; static const char *__pyx_filename; #if !defined(CYTHON_CCOMPLEX) #if defined(__cplusplus) #define CYTHON_CCOMPLEX 1 #elif defined(_Complex_I) #define CYTHON_CCOMPLEX 1 #else #define CYTHON_CCOMPLEX 0 #endif #endif #if CYTHON_CCOMPLEX #ifdef __cplusplus #include #else #include #endif #endif #if CYTHON_CCOMPLEX && !defined(__cplusplus) && defined(__sun__) && defined(__GNUC__) #undef _Complex_I #define _Complex_I 1.0fj #endif static const char *__pyx_f[] = { "_pixelfunc.pyx", "_common.pxd", "__init__.pxd", "type.pxd", }; #define IS_UNSIGNED(type) (((type) -1) > 0) struct __Pyx_StructField_; #define __PYX_BUF_FLAGS_PACKED_STRUCT (1 << 0) typedef struct { const char* name; /* for error messages only */ struct __Pyx_StructField_* fields; size_t size; /* sizeof(type) */ size_t arraysize[8]; /* length of array in each dimension */ int ndim; char typegroup; /* _R_eal, _C_omplex, Signed _I_nt, _U_nsigned int, _S_truct, _P_ointer, _O_bject, c_H_ar */ char is_unsigned; int flags; } __Pyx_TypeInfo; typedef struct __Pyx_StructField_ { __Pyx_TypeInfo* type; const char* name; size_t offset; } __Pyx_StructField; typedef struct { __Pyx_StructField* field; size_t parent_offset; } __Pyx_BufFmt_StackElem; typedef struct { __Pyx_StructField root; __Pyx_BufFmt_StackElem* head; size_t fmt_offset; size_t new_count, enc_count; size_t struct_alignment; int is_complex; char enc_type; char new_packmode; char enc_packmode; char is_valid_array; } __Pyx_BufFmt_Context; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":723 * # in Cython to enable them only on the right systems. * * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<< * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t */ typedef npy_int8 __pyx_t_5numpy_int8_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":724 * * ctypedef npy_int8 int8_t * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<< * ctypedef npy_int32 int32_t * ctypedef npy_int64 int64_t */ typedef npy_int16 __pyx_t_5numpy_int16_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":725 * ctypedef npy_int8 int8_t * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<< * ctypedef npy_int64 int64_t * #ctypedef npy_int96 int96_t */ typedef npy_int32 __pyx_t_5numpy_int32_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":726 * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<< * #ctypedef npy_int96 int96_t * #ctypedef npy_int128 int128_t */ typedef npy_int64 __pyx_t_5numpy_int64_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":730 * #ctypedef npy_int128 int128_t * * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<< * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t */ typedef npy_uint8 __pyx_t_5numpy_uint8_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":731 * * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<< * ctypedef npy_uint32 uint32_t * ctypedef npy_uint64 uint64_t */ typedef npy_uint16 __pyx_t_5numpy_uint16_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":732 * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<< * ctypedef npy_uint64 uint64_t * #ctypedef npy_uint96 uint96_t */ typedef npy_uint32 __pyx_t_5numpy_uint32_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":733 * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<< * #ctypedef npy_uint96 uint96_t * #ctypedef npy_uint128 uint128_t */ typedef npy_uint64 __pyx_t_5numpy_uint64_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":737 * #ctypedef npy_uint128 uint128_t * * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<< * ctypedef npy_float64 float64_t * #ctypedef npy_float80 float80_t */ typedef npy_float32 __pyx_t_5numpy_float32_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":738 * * ctypedef npy_float32 float32_t * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<< * #ctypedef npy_float80 float80_t * #ctypedef npy_float128 float128_t */ typedef npy_float64 __pyx_t_5numpy_float64_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":747 * # The int types are mapped a bit surprising -- * # numpy.int corresponds to 'l' and numpy.long to 'q' * ctypedef npy_long int_t # <<<<<<<<<<<<<< * ctypedef npy_longlong long_t * ctypedef npy_longlong longlong_t */ typedef npy_long __pyx_t_5numpy_int_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":748 * # numpy.int corresponds to 'l' and numpy.long to 'q' * ctypedef npy_long int_t * ctypedef npy_longlong long_t # <<<<<<<<<<<<<< * ctypedef npy_longlong longlong_t * */ typedef npy_longlong __pyx_t_5numpy_long_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":749 * ctypedef npy_long int_t * ctypedef npy_longlong long_t * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<< * * ctypedef npy_ulong uint_t */ typedef npy_longlong __pyx_t_5numpy_longlong_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":751 * ctypedef npy_longlong longlong_t * * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<< * ctypedef npy_ulonglong ulong_t * ctypedef npy_ulonglong ulonglong_t */ typedef npy_ulong __pyx_t_5numpy_uint_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":752 * * ctypedef npy_ulong uint_t * ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<< * ctypedef npy_ulonglong ulonglong_t * */ typedef npy_ulonglong __pyx_t_5numpy_ulong_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":753 * ctypedef npy_ulong uint_t * ctypedef npy_ulonglong ulong_t * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<< * * ctypedef npy_intp intp_t */ typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":755 * ctypedef npy_ulonglong ulonglong_t * * ctypedef npy_intp intp_t # <<<<<<<<<<<<<< * ctypedef npy_uintp uintp_t * */ typedef npy_intp __pyx_t_5numpy_intp_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":756 * * ctypedef npy_intp intp_t * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<< * * ctypedef npy_double float_t */ typedef npy_uintp __pyx_t_5numpy_uintp_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":758 * ctypedef npy_uintp uintp_t * * ctypedef npy_double float_t # <<<<<<<<<<<<<< * ctypedef npy_double double_t * ctypedef npy_longdouble longdouble_t */ typedef npy_double __pyx_t_5numpy_float_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":759 * * ctypedef npy_double float_t * ctypedef npy_double double_t # <<<<<<<<<<<<<< * ctypedef npy_longdouble longdouble_t * */ typedef npy_double __pyx_t_5numpy_double_t; /* "/home/zonca/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":760 * ctypedef npy_double float_t * ctypedef npy_double double_t * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<< * * ctypedef npy_cfloat cfloat_t */ typedef npy_longdouble __pyx_t_5numpy_longdouble_t; /* "_common.pxd":6 * from libcpp.vector cimport vector * * ctypedef unsigned size_t # <<<<<<<<<<<<<< * ctypedef size_t tsize * */ typedef unsigned int __pyx_t_7_common_size_t; 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/*proto*/ #define __Pyx_BufPtrCContig1d(type, buf, i0, s0) ((type)buf + i0) static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index); static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void); typedef struct { Py_ssize_t shape, strides, suboffsets; } __Pyx_Buf_DimInfo; typedef struct { size_t refcount; Py_buffer pybuffer; } __Pyx_Buffer; typedef struct { __Pyx_Buffer *rcbuffer; char *data; __Pyx_Buf_DimInfo diminfo[8]; } __Pyx_LocalBuf_ND; #if PY_MAJOR_VERSION < 3 static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags); static void __Pyx_ReleaseBuffer(Py_buffer *view); #else #define __Pyx_GetBuffer PyObject_GetBuffer #define __Pyx_ReleaseBuffer PyBuffer_Release #endif static Py_ssize_t __Pyx_zeros[] = {0, 0, 0, 0, 0, 0, 0, 0}; static Py_ssize_t __Pyx_minusones[] = {-1, -1, -1, -1, -1, -1, -1, -1}; static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); 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/* proto */ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ static char __pyx_k_B[] = "B"; static char __pyx_k_H[] = "H"; static char __pyx_k_I[] = "I"; static char __pyx_k_L[] = "L"; static char __pyx_k_O[] = "O"; static char __pyx_k_Q[] = "Q"; static char __pyx_k_b[] = "b"; static char __pyx_k_d[] = "d"; static char __pyx_k_f[] = "f"; static char __pyx_k_g[] = "g"; static char __pyx_k_h[] = "h"; static char __pyx_k_i[] = "i"; static char __pyx_k_l[] = "l"; static char __pyx_k_q[] = "q"; static char __pyx_k_Zd[] = "Zd"; static char __pyx_k_Zf[] = "Zf"; static char __pyx_k_Zg[] = "Zg"; static char __pyx_k_hb[] = "hb"; static char __pyx_k_np[] = "np"; static char __pyx_k_num[] = "num"; static char __pyx_k_pix[] = "pix"; static char __pyx_k_bool[] = "bool"; static char __pyx_k_log2[] = "log2"; static char __pyx_k_main[] = "__main__"; static char __pyx_k_nest[] = "nest"; static char __pyx_k_ring[] = "ring"; static char __pyx_k_size[] = "size"; 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static char __pyx_k_healpy__pixelfunc[] = "healpy._pixelfunc"; static char __pyx_k_pyx_releasebuffer[] = "__pyx_releasebuffer"; static char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous"; static char __pyx_k_Get_information_for_rings_Rings[] = "Get information for rings\n\n Rings are specified by a positive integer, 1 <= ring <= 4*nside-1.\n\n Parameters\n ----------\n nside : int\n The healpix nside parameter, must be a power of 2\n ring : int, scalar or array-like\n The ring number\n\n Returns\n -------\n startpix : int64, length equal to that of *ring*\n Starting pixel identifier (NEST ordering)\n ringpix : int64, length equal to that of *ring*\n Number of pixels in ring\n costheta : float, length equal to that of *ring*\n Cosine of the co-latitude\n sintheta : float, length equal to that of *ring*\n Sine of the co-latitude\n shifted : bool, length equal to that of *ring*\n If True, the center of the first pixel is not at phi=0\n\n Example\n -------\n >>> import healpy as hp\n >>> import numpy as np\n >>> nside = 2\n >>> hp.ringinfo(nside, np.arange(4*nside-1))\n (array([ 0, 0, 4, 12, 20, 28, 36]), array([0, 4, 8, 8, 8, 8, 8]), array([ 1. , 0.91666667, 0.66666667, 0.33333333, 0. ,\n -0.33333333, -0.66666667]), array([ 0. , 0.39965263, 0.74535599, 0.94280904, 1. ,\n 0.94280904, 0.74535599]), array([ True, True, True, False, True, False, True], dtype=bool))\n "; static char __pyx_k_home_zonca_p_software_healpy_he[] = "/home/zonca/p/software/healpy/healpy/src/_pixelfunc.pyx"; static char __pyx_k_unknown_dtype_code_in_numpy_pxd[] = "unknown dtype code in numpy.pxd (%d)"; static char __pyx_k_Convert_pixel_identifier_to_ring[] = "Convert pixel identifier to ring number\n\n Rings are specified by a positive integer, 1 <= ring <= 4*nside-1.\n\n Parameters\n ----------\n nside : int\n The healpix nside parameter, must be a power of 2\n pix : int64, scalar or array-like\n The pixel identifier(s)\n nest : bool\n Is *pix* specified in the NEST ordering scheme?\n\n Returns\n -------\n ring : int, length equal to that of *pix*\n Ring number\n\n Example\n -------\n >>> import healpy as hp\n >>> import numpy as np\n >>> nside = 2\n >>> hp.pix2ring(nside, np.arange(hp.nside2npix(nside)))\n array([1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 3, 3, 3, 3, 3, 3, 3, 3, 4, 4, 4,\n 4, 4, 4, 4, 4, 5, 5, 5, 5, 5, 5, 5, 5, 6, 6, 6, 6, 6, 6, 6, 6, 7, 7,\n 7, 7])\n "; static char __pyx_k_Format_string_allocated_too_shor[] = "Format string allocated too short, see comment in numpy.pxd"; static char __pyx_k_Non_native_byte_order_not_suppor[] = "Non-native byte order not supported"; static char __pyx_k_Wrong_nside_value_must_be_a_powe[] = "Wrong nside value, must be a power of 2"; static char __pyx_k_ndarray_is_not_Fortran_contiguou[] = "ndarray is not Fortran contiguous"; static char __pyx_k_Format_string_allocated_too_shor_2[] = "Format string allocated too short."; static PyObject *__pyx_kp_u_Convert_pixel_identifier_to_ring; static PyObject *__pyx_kp_u_Format_string_allocated_too_shor; static PyObject *__pyx_kp_u_Format_string_allocated_too_shor_2; static PyObject *__pyx_kp_u_Get_information_for_rings_Rings; static PyObject *__pyx_kp_u_Non_native_byte_order_not_suppor; static PyObject *__pyx_n_s_RuntimeError; static PyObject *__pyx_n_s_ValueError; static PyObject *__pyx_kp_s_Wrong_nside_value_must_be_a_powe; static PyObject *__pyx_n_s_bool; static PyObject *__pyx_n_s_costheta; static PyObject *__pyx_n_s_dtype; static PyObject *__pyx_n_s_empty; static PyObject *__pyx_n_s_float; static PyObject *__pyx_n_s_hb; static PyObject *__pyx_n_s_healpy__pixelfunc; static PyObject *__pyx_kp_s_home_zonca_p_software_healpy_he; static PyObject *__pyx_n_s_i; static PyObject *__pyx_n_s_import; static PyObject *__pyx_n_s_int64; static PyObject *__pyx_n_s_log2; static PyObject *__pyx_n_s_main; static PyObject *__pyx_kp_u_ndarray_is_not_C_contiguous; static PyObject *__pyx_kp_u_ndarray_is_not_Fortran_contiguou; static PyObject *__pyx_n_s_nest; static PyObject *__pyx_n_s_np; static PyObject *__pyx_n_s_nside; static PyObject *__pyx_n_s_num; static PyObject *__pyx_n_s_numpy; static PyObject *__pyx_n_s_pix; static PyObject *__pyx_n_s_pix2ring; static PyObject *__pyx_kp_u_pix2ring_line_58; static PyObject *__pyx_n_s_pyx_getbuffer; static PyObject *__pyx_n_s_pyx_releasebuffer; static PyObject *__pyx_n_s_range; static PyObject *__pyx_n_s_ring; static PyObject *__pyx_n_s_ringinfo; static PyObject *__pyx_kp_u_ringinfo_line_9; static PyObject *__pyx_n_s_ringpix; static PyObject *__pyx_n_s_round; 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/*proto*/ static char __pyx_doc_6healpy_10_pixelfunc_ringinfo[] = "Get information for rings\n\n Rings are specified by a positive integer, 1 <= ring <= 4*nside-1.\n\n Parameters\n ----------\n nside : int\n The healpix nside parameter, must be a power of 2\n ring : int, scalar or array-like\n The ring number\n\n Returns\n -------\n startpix : int64, length equal to that of *ring*\n Starting pixel identifier (NEST ordering)\n ringpix : int64, length equal to that of *ring*\n Number of pixels in ring\n costheta : float, length equal to that of *ring*\n Cosine of the co-latitude\n sintheta : float, length equal to that of *ring*\n Sine of the co-latitude\n shifted : bool, length equal to that of *ring*\n If True, the center of the first pixel is not at phi=0\n\n Example\n -------\n >>> import healpy as hp\n >>> import numpy as np\n >>> nside = 2\n >>> hp.ringinfo(nside, np.arange(4*nside-1))\n (array([ 0, 0, 4, 12, 20, 28, 36]), array([0, 4, 8, 8, 8, 8, 8]), array([ 1. , 0.91666667, 0.66666667, 0.33333333, 0. ,\n -0.33333333, -0.66666667]), array([ 0. , 0.39965263, 0.74535599, 0.94280904, 1. ,\n 0.94280904, 0.74535599]), array([ True, True, True, False, True, False, True], dtype=bool))\n "; 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switch (pos_args) { case 0: if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_nside)) != 0)) kw_args--; else goto __pyx_L5_argtuple_error; case 1: if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_ring)) != 0)) kw_args--; else { __Pyx_RaiseArgtupleInvalid("ringinfo", 1, 2, 2, 1); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 9; __pyx_clineno = __LINE__; goto __pyx_L3_error;} } } if (unlikely(kw_args > 0)) { if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "ringinfo") < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 9; __pyx_clineno = __LINE__; goto __pyx_L3_error;} } } else if (PyTuple_GET_SIZE(__pyx_args) != 2) { goto __pyx_L5_argtuple_error; } else { values[0] = PyTuple_GET_ITEM(__pyx_args, 0); values[1] = PyTuple_GET_ITEM(__pyx_args, 1); } __pyx_v_nside = values[0]; __pyx_v_ring = ((PyArrayObject *)values[1]); } goto __pyx_L4_argument_unpacking_done; __pyx_L5_argtuple_error:; __Pyx_RaiseArgtupleInvalid("ringinfo", 1, 2, 2, PyTuple_GET_SIZE(__pyx_args)); 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"" : "s", num_found); } static void __Pyx_RaiseDoubleKeywordsError( const char* func_name, PyObject* kw_name) { PyErr_Format(PyExc_TypeError, #if PY_MAJOR_VERSION >= 3 "%s() got multiple values for keyword argument '%U'", func_name, kw_name); #else "%s() got multiple values for keyword argument '%s'", func_name, PyString_AsString(kw_name)); #endif } static int __Pyx_ParseOptionalKeywords( PyObject *kwds, PyObject **argnames[], PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, const char* function_name) { PyObject *key = 0, *value = 0; Py_ssize_t pos = 0; PyObject*** name; PyObject*** first_kw_arg = argnames + num_pos_args; while (PyDict_Next(kwds, &pos, &key, &value)) { name = first_kw_arg; while (*name && (**name != key)) name++; if (*name) { values[name-argnames] = value; continue; } name = first_kw_arg; #if PY_MAJOR_VERSION < 3 if (likely(PyString_CheckExact(key)) || likely(PyString_Check(key))) { while (*name) { if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key)) && _PyString_Eq(**name, key)) { values[name-argnames] = value; break; } name++; } if (*name) continue; else { PyObject*** argname = argnames; while (argname != first_kw_arg) { if ((**argname == key) || ( (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key)) && _PyString_Eq(**argname, key))) { goto arg_passed_twice; } argname++; } } } else #endif if (likely(PyUnicode_Check(key))) { while (*name) { int cmp = (**name == key) ? 0 : #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : #endif PyUnicode_Compare(**name, key); if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; if (cmp == 0) { values[name-argnames] = value; break; } name++; } if (*name) continue; else { PyObject*** argname = argnames; while (argname != first_kw_arg) { int cmp = (**argname == key) ? 0 : #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : #endif PyUnicode_Compare(**argname, key); if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; if (cmp == 0) goto arg_passed_twice; argname++; } } } else goto invalid_keyword_type; if (kwds2) { if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad; } else { goto invalid_keyword; } } return 0; arg_passed_twice: __Pyx_RaiseDoubleKeywordsError(function_name, key); goto bad; invalid_keyword_type: PyErr_Format(PyExc_TypeError, "%.200s() keywords must be strings", function_name); goto bad; invalid_keyword: PyErr_Format(PyExc_TypeError, #if PY_MAJOR_VERSION < 3 "%.200s() got an unexpected keyword argument '%.200s'", function_name, PyString_AsString(key)); #else "%s() got an unexpected keyword argument '%U'", function_name, key); #endif bad: return -1; } static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) { PyErr_Format(PyExc_TypeError, "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)", name, type->tp_name, Py_TYPE(obj)->tp_name); } static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, const char *name, int exact) { if (unlikely(!type)) { PyErr_SetString(PyExc_SystemError, "Missing type object"); return 0; } if (none_allowed && obj == Py_None) return 1; else if (exact) { if (likely(Py_TYPE(obj) == type)) return 1; #if PY_MAJOR_VERSION == 2 else if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1; #endif } else { if (likely(PyObject_TypeCheck(obj, type))) return 1; } __Pyx_RaiseArgumentTypeInvalid(name, obj, type); return 0; } static CYTHON_INLINE int __Pyx_IsLittleEndian(void) { unsigned int n = 1; return *(unsigned char*)(&n) != 0; } static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, __Pyx_BufFmt_StackElem* stack, __Pyx_TypeInfo* type) { stack[0].field = &ctx->root; stack[0].parent_offset = 0; ctx->root.type = type; ctx->root.name = "buffer dtype"; ctx->root.offset = 0; ctx->head = stack; ctx->head->field = &ctx->root; ctx->fmt_offset = 0; ctx->head->parent_offset = 0; ctx->new_packmode = '@'; ctx->enc_packmode = '@'; ctx->new_count = 1; ctx->enc_count = 0; ctx->enc_type = 0; ctx->is_complex = 0; ctx->is_valid_array = 0; ctx->struct_alignment = 0; while (type->typegroup == 'S') { ++ctx->head; ctx->head->field = type->fields; ctx->head->parent_offset = 0; type = type->fields->type; } } static int __Pyx_BufFmt_ParseNumber(const char** ts) { int count; const char* t = *ts; if (*t < '0' || *t > '9') { return -1; } else { count = *t++ - '0'; while (*t >= '0' && *t < '9') { count *= 10; count += *t++ - '0'; } } *ts = t; return count; } static int __Pyx_BufFmt_ExpectNumber(const char **ts) { int number = __Pyx_BufFmt_ParseNumber(ts); if (number == -1) /* First char was not a digit */ PyErr_Format(PyExc_ValueError,\ "Does not understand character buffer dtype format string ('%c')", **ts); return number; } static void __Pyx_BufFmt_RaiseUnexpectedChar(char ch) { PyErr_Format(PyExc_ValueError, "Unexpected format string character: '%c'", ch); } static const char* __Pyx_BufFmt_DescribeTypeChar(char ch, int is_complex) { switch (ch) { case 'c': return "'char'"; case 'b': return "'signed char'"; case 'B': return "'unsigned char'"; case 'h': return "'short'"; case 'H': return "'unsigned short'"; case 'i': return "'int'"; case 'I': return "'unsigned int'"; case 'l': return "'long'"; case 'L': return "'unsigned long'"; case 'q': return "'long long'"; case 'Q': return "'unsigned long long'"; case 'f': return (is_complex ? "'complex float'" : "'float'"); case 'd': return (is_complex ? "'complex double'" : "'double'"); case 'g': return (is_complex ? "'complex long double'" : "'long double'"); case 'T': return "a struct"; case 'O': return "Python object"; case 'P': return "a pointer"; case 's': case 'p': return "a string"; case 0: return "end"; default: return "unparseable format string"; } } static size_t __Pyx_BufFmt_TypeCharToStandardSize(char ch, int is_complex) { switch (ch) { case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; case 'h': case 'H': return 2; case 'i': case 'I': case 'l': case 'L': return 4; case 'q': case 'Q': return 8; case 'f': return (is_complex ? 8 : 4); case 'd': return (is_complex ? 16 : 8); case 'g': { PyErr_SetString(PyExc_ValueError, "Python does not define a standard format string size for long double ('g').."); return 0; } case 'O': case 'P': return sizeof(void*); default: __Pyx_BufFmt_RaiseUnexpectedChar(ch); return 0; } } static size_t __Pyx_BufFmt_TypeCharToNativeSize(char ch, int is_complex) { switch (ch) { case 'c': case 'b': case 'B': case 's': case 'p': return 1; case 'h': case 'H': return sizeof(short); case 'i': case 'I': return sizeof(int); case 'l': case 'L': return sizeof(long); #ifdef HAVE_LONG_LONG case 'q': case 'Q': return sizeof(PY_LONG_LONG); #endif case 'f': return sizeof(float) * (is_complex ? 2 : 1); case 'd': return sizeof(double) * (is_complex ? 2 : 1); case 'g': return sizeof(long double) * (is_complex ? 2 : 1); case 'O': case 'P': return sizeof(void*); default: { __Pyx_BufFmt_RaiseUnexpectedChar(ch); return 0; } } } typedef struct { char c; short x; } __Pyx_st_short; typedef struct { char c; int x; } __Pyx_st_int; typedef struct { char c; long x; } __Pyx_st_long; typedef struct { char c; float x; } __Pyx_st_float; typedef struct { char c; double x; } __Pyx_st_double; typedef struct { char c; long double x; } __Pyx_st_longdouble; typedef struct { char c; void *x; } __Pyx_st_void_p; #ifdef HAVE_LONG_LONG typedef struct { char c; PY_LONG_LONG x; } __Pyx_st_longlong; #endif static size_t __Pyx_BufFmt_TypeCharToAlignment(char ch, CYTHON_UNUSED int is_complex) { switch (ch) { case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; case 'h': case 'H': return sizeof(__Pyx_st_short) - sizeof(short); case 'i': case 'I': return sizeof(__Pyx_st_int) - sizeof(int); case 'l': case 'L': return sizeof(__Pyx_st_long) - sizeof(long); #ifdef HAVE_LONG_LONG case 'q': case 'Q': return sizeof(__Pyx_st_longlong) - sizeof(PY_LONG_LONG); #endif case 'f': return sizeof(__Pyx_st_float) - sizeof(float); case 'd': return sizeof(__Pyx_st_double) - sizeof(double); case 'g': return sizeof(__Pyx_st_longdouble) - sizeof(long double); case 'P': case 'O': return sizeof(__Pyx_st_void_p) - sizeof(void*); default: __Pyx_BufFmt_RaiseUnexpectedChar(ch); return 0; } } /* These are for computing the padding at the end of the struct to align on the first member of the struct. This will probably the same as above, but we don't have any guarantees. */ typedef struct { short x; char c; } __Pyx_pad_short; typedef struct { int x; char c; } __Pyx_pad_int; typedef struct { long x; char c; } __Pyx_pad_long; typedef struct { float x; char c; } __Pyx_pad_float; typedef struct { double x; char c; } __Pyx_pad_double; typedef struct { long double x; char c; } __Pyx_pad_longdouble; typedef struct { void *x; char c; } __Pyx_pad_void_p; #ifdef HAVE_LONG_LONG typedef struct { PY_LONG_LONG x; char c; } __Pyx_pad_longlong; #endif static size_t __Pyx_BufFmt_TypeCharToPadding(char ch, CYTHON_UNUSED int is_complex) { switch (ch) { case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; case 'h': case 'H': return sizeof(__Pyx_pad_short) - sizeof(short); case 'i': case 'I': return sizeof(__Pyx_pad_int) - sizeof(int); case 'l': case 'L': return sizeof(__Pyx_pad_long) - sizeof(long); #ifdef HAVE_LONG_LONG case 'q': case 'Q': return sizeof(__Pyx_pad_longlong) - sizeof(PY_LONG_LONG); #endif case 'f': return sizeof(__Pyx_pad_float) - sizeof(float); case 'd': return sizeof(__Pyx_pad_double) - sizeof(double); case 'g': return sizeof(__Pyx_pad_longdouble) - sizeof(long double); case 'P': case 'O': return sizeof(__Pyx_pad_void_p) - sizeof(void*); default: __Pyx_BufFmt_RaiseUnexpectedChar(ch); return 0; } } static char __Pyx_BufFmt_TypeCharToGroup(char ch, int is_complex) { switch (ch) { case 'c': return 'H'; case 'b': case 'h': case 'i': case 'l': case 'q': case 's': case 'p': return 'I'; case 'B': case 'H': case 'I': case 'L': case 'Q': return 'U'; case 'f': case 'd': case 'g': return (is_complex ? 'C' : 'R'); case 'O': return 'O'; case 'P': return 'P'; default: { __Pyx_BufFmt_RaiseUnexpectedChar(ch); return 0; } } } static void __Pyx_BufFmt_RaiseExpected(__Pyx_BufFmt_Context* ctx) { if (ctx->head == NULL || ctx->head->field == &ctx->root) { const char* expected; const char* quote; if (ctx->head == NULL) { expected = "end"; quote = ""; } else { expected = ctx->head->field->type->name; quote = "'"; } PyErr_Format(PyExc_ValueError, "Buffer dtype mismatch, expected %s%s%s but got %s", quote, expected, quote, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex)); } else { __Pyx_StructField* field = ctx->head->field; __Pyx_StructField* parent = (ctx->head - 1)->field; PyErr_Format(PyExc_ValueError, "Buffer dtype mismatch, expected '%s' but got %s in '%s.%s'", field->type->name, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex), parent->type->name, field->name); } } static int __Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context* ctx) { char group; size_t size, offset, arraysize = 1; if (ctx->enc_type == 0) return 0; if (ctx->head->field->type->arraysize[0]) { int i, ndim = 0; if (ctx->enc_type == 's' || ctx->enc_type == 'p') { ctx->is_valid_array = ctx->head->field->type->ndim == 1; ndim = 1; if (ctx->enc_count != ctx->head->field->type->arraysize[0]) { PyErr_Format(PyExc_ValueError, "Expected a dimension of size %zu, got %zu", ctx->head->field->type->arraysize[0], ctx->enc_count); return -1; } } if (!ctx->is_valid_array) { PyErr_Format(PyExc_ValueError, "Expected %d dimensions, got %d", ctx->head->field->type->ndim, ndim); return -1; } for (i = 0; i < ctx->head->field->type->ndim; i++) { arraysize *= ctx->head->field->type->arraysize[i]; } ctx->is_valid_array = 0; ctx->enc_count = 1; } group = __Pyx_BufFmt_TypeCharToGroup(ctx->enc_type, ctx->is_complex); do { __Pyx_StructField* field = ctx->head->field; __Pyx_TypeInfo* type = field->type; if (ctx->enc_packmode == '@' || ctx->enc_packmode == '^') { size = __Pyx_BufFmt_TypeCharToNativeSize(ctx->enc_type, ctx->is_complex); } else { size = __Pyx_BufFmt_TypeCharToStandardSize(ctx->enc_type, ctx->is_complex); } if (ctx->enc_packmode == '@') { size_t align_at = __Pyx_BufFmt_TypeCharToAlignment(ctx->enc_type, ctx->is_complex); size_t align_mod_offset; if (align_at == 0) return -1; align_mod_offset = ctx->fmt_offset % align_at; if (align_mod_offset > 0) ctx->fmt_offset += align_at - align_mod_offset; if (ctx->struct_alignment == 0) ctx->struct_alignment = __Pyx_BufFmt_TypeCharToPadding(ctx->enc_type, ctx->is_complex); } if (type->size != size || type->typegroup != group) { if (type->typegroup == 'C' && type->fields != NULL) { size_t parent_offset = ctx->head->parent_offset + field->offset; ++ctx->head; ctx->head->field = type->fields; ctx->head->parent_offset = parent_offset; continue; } if ((type->typegroup == 'H' || group == 'H') && type->size == size) { } else { __Pyx_BufFmt_RaiseExpected(ctx); return -1; } } offset = ctx->head->parent_offset + field->offset; if (ctx->fmt_offset != offset) { PyErr_Format(PyExc_ValueError, "Buffer dtype mismatch; next field is at offset %" CYTHON_FORMAT_SSIZE_T "d but %" CYTHON_FORMAT_SSIZE_T "d expected", (Py_ssize_t)ctx->fmt_offset, (Py_ssize_t)offset); return -1; } ctx->fmt_offset += size; if (arraysize) ctx->fmt_offset += (arraysize - 1) * size; --ctx->enc_count; /* Consume from buffer string */ while (1) { if (field == &ctx->root) { ctx->head = NULL; if (ctx->enc_count != 0) { __Pyx_BufFmt_RaiseExpected(ctx); return -1; } break; /* breaks both loops as ctx->enc_count == 0 */ } ctx->head->field = ++field; if (field->type == NULL) { --ctx->head; field = ctx->head->field; continue; } else if (field->type->typegroup == 'S') { size_t parent_offset = ctx->head->parent_offset + field->offset; if (field->type->fields->type == NULL) continue; /* empty struct */ field = field->type->fields; ++ctx->head; ctx->head->field = field; ctx->head->parent_offset = parent_offset; break; } else { break; } } } while (ctx->enc_count); ctx->enc_type = 0; ctx->is_complex = 0; return 0; } static CYTHON_INLINE PyObject * __pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp) { const char *ts = *tsp; int i = 0, number; int ndim = ctx->head->field->type->ndim; ; ++ts; if (ctx->new_count != 1) { PyErr_SetString(PyExc_ValueError, "Cannot handle repeated arrays in format string"); return NULL; } if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; while (*ts && *ts != ')') { switch (*ts) { case ' ': case '\f': case '\r': case '\n': case '\t': case '\v': continue; default: break; /* not a 'break' in the loop */ } number = __Pyx_BufFmt_ExpectNumber(&ts); if (number == -1) return NULL; if (i < ndim && (size_t) number != ctx->head->field->type->arraysize[i]) return PyErr_Format(PyExc_ValueError, "Expected a dimension of size %zu, got %d", ctx->head->field->type->arraysize[i], number); if (*ts != ',' && *ts != ')') return PyErr_Format(PyExc_ValueError, "Expected a comma in format string, got '%c'", *ts); if (*ts == ',') ts++; i++; } if (i != ndim) return PyErr_Format(PyExc_ValueError, "Expected %d dimension(s), got %d", ctx->head->field->type->ndim, i); if (!*ts) { PyErr_SetString(PyExc_ValueError, "Unexpected end of format string, expected ')'"); return NULL; } ctx->is_valid_array = 1; ctx->new_count = 1; *tsp = ++ts; return Py_None; } static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts) { int got_Z = 0; while (1) { switch(*ts) { case 0: if (ctx->enc_type != 0 && ctx->head == NULL) { __Pyx_BufFmt_RaiseExpected(ctx); return NULL; } if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; if (ctx->head != NULL) { __Pyx_BufFmt_RaiseExpected(ctx); return NULL; } return ts; case ' ': case 10: case 13: ++ts; break; case '<': if (!__Pyx_IsLittleEndian()) { PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler"); return NULL; } ctx->new_packmode = '='; ++ts; break; case '>': case '!': if (__Pyx_IsLittleEndian()) { PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler"); return NULL; } ctx->new_packmode = '='; ++ts; break; case '=': case '@': case '^': ctx->new_packmode = *ts++; break; case 'T': /* substruct */ { const char* ts_after_sub; size_t i, struct_count = ctx->new_count; size_t struct_alignment = ctx->struct_alignment; ctx->new_count = 1; ++ts; if (*ts != '{') { PyErr_SetString(PyExc_ValueError, "Buffer acquisition: Expected '{' after 'T'"); return NULL; } if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; ctx->enc_type = 0; /* Erase processed last struct element */ ctx->enc_count = 0; ctx->struct_alignment = 0; ++ts; ts_after_sub = ts; for (i = 0; i != struct_count; ++i) { ts_after_sub = __Pyx_BufFmt_CheckString(ctx, ts); if (!ts_after_sub) return NULL; } ts = ts_after_sub; if (struct_alignment) ctx->struct_alignment = struct_alignment; } break; case '}': /* end of substruct; either repeat or move on */ { size_t alignment = ctx->struct_alignment; ++ts; if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; ctx->enc_type = 0; /* Erase processed last struct element */ if (alignment && ctx->fmt_offset % alignment) { ctx->fmt_offset += alignment - (ctx->fmt_offset % alignment); } } return ts; case 'x': if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; ctx->fmt_offset += ctx->new_count; ctx->new_count = 1; ctx->enc_count = 0; ctx->enc_type = 0; ctx->enc_packmode = ctx->new_packmode; ++ts; break; case 'Z': got_Z = 1; ++ts; if (*ts != 'f' && *ts != 'd' && *ts != 'g') { __Pyx_BufFmt_RaiseUnexpectedChar('Z'); return NULL; } /* fall through */ case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I': case 'l': case 'L': case 'q': case 'Q': case 'f': case 'd': case 'g': case 'O': case 's': case 'p': if (ctx->enc_type == *ts && got_Z == ctx->is_complex && ctx->enc_packmode == ctx->new_packmode) { ctx->enc_count += ctx->new_count; } else { if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; ctx->enc_count = ctx->new_count; ctx->enc_packmode = ctx->new_packmode; ctx->enc_type = *ts; ctx->is_complex = got_Z; } ++ts; ctx->new_count = 1; got_Z = 0; break; case ':': ++ts; while(*ts != ':') ++ts; ++ts; break; case '(': if (!__pyx_buffmt_parse_array(ctx, &ts)) return NULL; break; default: { int number = __Pyx_BufFmt_ExpectNumber(&ts); if (number == -1) return NULL; ctx->new_count = (size_t)number; } } } } static CYTHON_INLINE void __Pyx_ZeroBuffer(Py_buffer* buf) { buf->buf = NULL; buf->obj = NULL; buf->strides = __Pyx_zeros; buf->shape = __Pyx_zeros; buf->suboffsets = __Pyx_minusones; } static CYTHON_INLINE int __Pyx_GetBufferAndValidate( Py_buffer* buf, PyObject* obj, __Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack) { if (obj == Py_None || obj == NULL) { __Pyx_ZeroBuffer(buf); return 0; } buf->buf = NULL; if (__Pyx_GetBuffer(obj, buf, flags) == -1) goto fail; if (buf->ndim != nd) { PyErr_Format(PyExc_ValueError, "Buffer has wrong number of dimensions (expected %d, got %d)", nd, buf->ndim); goto fail; } if (!cast) { __Pyx_BufFmt_Context ctx; __Pyx_BufFmt_Init(&ctx, stack, dtype); if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail; } if ((unsigned)buf->itemsize != dtype->size) { PyErr_Format(PyExc_ValueError, "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "d byte%s) does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "d byte%s)", buf->itemsize, (buf->itemsize > 1) ? "s" : "", dtype->name, (Py_ssize_t)dtype->size, (dtype->size > 1) ? "s" : ""); goto fail; } if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones; return 0; fail:; __Pyx_ZeroBuffer(buf); return -1; } static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) { if (info->buf == NULL) return; if (info->suboffsets == __Pyx_minusones) info->suboffsets = NULL; __Pyx_ReleaseBuffer(info); } #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) { PyObject *result; ternaryfunc call = func->ob_type->tp_call; if (unlikely(!call)) return PyObject_Call(func, arg, kw); #if PY_VERSION_HEX >= 0x02060000 if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) return NULL; #endif result = (*call)(func, arg, kw); #if PY_VERSION_HEX >= 0x02060000 Py_LeaveRecursiveCall(); #endif if (unlikely(!result) && unlikely(!PyErr_Occurred())) { PyErr_SetString( PyExc_SystemError, "NULL result without error in PyObject_Call"); } return result; } #endif static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb) { #if CYTHON_COMPILING_IN_CPYTHON PyObject *tmp_type, *tmp_value, *tmp_tb; PyThreadState *tstate = PyThreadState_GET(); tmp_type = tstate->curexc_type; tmp_value = tstate->curexc_value; tmp_tb = tstate->curexc_traceback; tstate->curexc_type = type; tstate->curexc_value = value; tstate->curexc_traceback = tb; Py_XDECREF(tmp_type); Py_XDECREF(tmp_value); Py_XDECREF(tmp_tb); #else PyErr_Restore(type, value, tb); #endif } static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb) { #if CYTHON_COMPILING_IN_CPYTHON PyThreadState *tstate = PyThreadState_GET(); *type = tstate->curexc_type; *value = tstate->curexc_value; *tb = tstate->curexc_traceback; tstate->curexc_type = 0; tstate->curexc_value = 0; tstate->curexc_traceback = 0; #else PyErr_Fetch(type, value, tb); #endif } #if PY_MAJOR_VERSION < 3 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, CYTHON_UNUSED PyObject *cause) { Py_XINCREF(type); if (!value || value == Py_None) value = NULL; else Py_INCREF(value); if (!tb || tb == Py_None) tb = NULL; else { Py_INCREF(tb); if (!PyTraceBack_Check(tb)) { PyErr_SetString(PyExc_TypeError, "raise: arg 3 must be a traceback or None"); goto raise_error; } } #if PY_VERSION_HEX < 0x02050000 if (PyClass_Check(type)) { #else if (PyType_Check(type)) { #endif #if CYTHON_COMPILING_IN_PYPY if (!value) { Py_INCREF(Py_None); value = Py_None; } #endif PyErr_NormalizeException(&type, &value, &tb); } else { if (value) { PyErr_SetString(PyExc_TypeError, "instance exception may not have a separate value"); goto raise_error; } value = type; #if PY_VERSION_HEX < 0x02050000 if (PyInstance_Check(type)) { type = (PyObject*) ((PyInstanceObject*)type)->in_class; Py_INCREF(type); } else { type = 0; PyErr_SetString(PyExc_TypeError, "raise: exception must be an old-style class or instance"); goto raise_error; } #else type = (PyObject*) Py_TYPE(type); Py_INCREF(type); if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) { PyErr_SetString(PyExc_TypeError, "raise: exception class must be a subclass of BaseException"); goto raise_error; } #endif } __Pyx_ErrRestore(type, value, tb); return; raise_error: Py_XDECREF(value); Py_XDECREF(type); Py_XDECREF(tb); return; } #else /* Python 3+ */ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { PyObject* owned_instance = NULL; if (tb == Py_None) { tb = 0; } else if (tb && !PyTraceBack_Check(tb)) { PyErr_SetString(PyExc_TypeError, "raise: arg 3 must be a traceback or None"); goto bad; } if (value == Py_None) value = 0; if (PyExceptionInstance_Check(type)) { if (value) { PyErr_SetString(PyExc_TypeError, "instance exception may not have a separate value"); goto bad; } value = type; type = (PyObject*) Py_TYPE(value); } else if (PyExceptionClass_Check(type)) { PyObject *instance_class = NULL; if (value && PyExceptionInstance_Check(value)) { instance_class = (PyObject*) Py_TYPE(value); if (instance_class != type) { if (PyObject_IsSubclass(instance_class, type)) { type = instance_class; } else { instance_class = NULL; } } } if (!instance_class) { PyObject *args; if (!value) args = PyTuple_New(0); else if (PyTuple_Check(value)) { Py_INCREF(value); args = value; } else args = PyTuple_Pack(1, value); if (!args) goto bad; owned_instance = PyObject_Call(type, args, NULL); Py_DECREF(args); if (!owned_instance) goto bad; value = owned_instance; if (!PyExceptionInstance_Check(value)) { PyErr_Format(PyExc_TypeError, "calling %R should have returned an instance of " "BaseException, not %R", type, Py_TYPE(value)); goto bad; } } } else { PyErr_SetString(PyExc_TypeError, "raise: exception class must be a subclass of BaseException"); goto bad; } #if PY_VERSION_HEX >= 0x03030000 if (cause) { #else if (cause && cause != Py_None) { #endif PyObject *fixed_cause; if (cause == Py_None) { fixed_cause = NULL; } else if (PyExceptionClass_Check(cause)) { fixed_cause = PyObject_CallObject(cause, NULL); if (fixed_cause == NULL) goto bad; } else if (PyExceptionInstance_Check(cause)) { fixed_cause = cause; Py_INCREF(fixed_cause); } else { PyErr_SetString(PyExc_TypeError, "exception causes must derive from " "BaseException"); goto bad; } PyException_SetCause(value, fixed_cause); } PyErr_SetObject(type, value); if (tb) { PyThreadState *tstate = PyThreadState_GET(); PyObject* tmp_tb = tstate->curexc_traceback; if (tb != tmp_tb) { Py_INCREF(tb); tstate->curexc_traceback = tb; Py_XDECREF(tmp_tb); } } bad: Py_XDECREF(owned_instance); return; } #endif static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) { PyObject *result; #if CYTHON_COMPILING_IN_CPYTHON result = PyDict_GetItem(__pyx_d, name); if (result) { Py_INCREF(result); } else { #else result = PyObject_GetItem(__pyx_d, name); if (!result) { PyErr_Clear(); #endif result = __Pyx_GetBuiltinName(name); } return result; } static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { if (unlikely(!type)) { PyErr_SetString(PyExc_SystemError, "Missing type object"); return 0; } if (likely(PyObject_TypeCheck(obj, type))) return 1; PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", Py_TYPE(obj)->tp_name, type->tp_name); return 0; } static void __Pyx_RaiseBufferIndexError(int axis) { PyErr_Format(PyExc_IndexError, "Out of bounds on buffer access (axis %d)", axis); } static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno, CYTHON_UNUSED int lineno, CYTHON_UNUSED const char *filename, int full_traceback) { PyObject *old_exc, *old_val, *old_tb; PyObject *ctx; __Pyx_ErrFetch(&old_exc, &old_val, &old_tb); if (full_traceback) { Py_XINCREF(old_exc); Py_XINCREF(old_val); Py_XINCREF(old_tb); __Pyx_ErrRestore(old_exc, old_val, old_tb); PyErr_PrintEx(1); } #if PY_MAJOR_VERSION < 3 ctx = PyString_FromString(name); #else ctx = PyUnicode_FromString(name); #endif __Pyx_ErrRestore(old_exc, old_val, old_tb); if (!ctx) { PyErr_WriteUnraisable(Py_None); } else { PyErr_WriteUnraisable(ctx); Py_DECREF(ctx); } } static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { PyErr_Format(PyExc_ValueError, "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); } static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { PyErr_Format(PyExc_ValueError, "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", index, (index == 1) ? "" : "s"); } static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); } #if PY_MAJOR_VERSION < 3 static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags) { #if PY_VERSION_HEX >= 0x02060000 if (PyObject_CheckBuffer(obj)) return PyObject_GetBuffer(obj, view, flags); #endif if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) return __pyx_pw_5numpy_7ndarray_1__getbuffer__(obj, view, flags); #if PY_VERSION_HEX < 0x02060000 if (obj->ob_type->tp_dict) { PyObject *getbuffer_cobj = PyObject_GetItem( obj->ob_type->tp_dict, __pyx_n_s_pyx_getbuffer); if (getbuffer_cobj) { getbufferproc func = (getbufferproc) PyCObject_AsVoidPtr(getbuffer_cobj); Py_DECREF(getbuffer_cobj); if (!func) goto fail; return func(obj, view, flags); } else { PyErr_Clear(); } } #endif PyErr_Format(PyExc_TypeError, "'%.200s' does not have the buffer interface", Py_TYPE(obj)->tp_name); #if PY_VERSION_HEX < 0x02060000 fail: #endif return -1; } static void __Pyx_ReleaseBuffer(Py_buffer *view) { PyObject *obj = view->obj; if (!obj) return; #if PY_VERSION_HEX >= 0x02060000 if (PyObject_CheckBuffer(obj)) { PyBuffer_Release(view); return; } #endif if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) { __pyx_pw_5numpy_7ndarray_3__releasebuffer__(obj, view); return; } #if PY_VERSION_HEX < 0x02060000 if (obj->ob_type->tp_dict) { PyObject *releasebuffer_cobj = PyObject_GetItem( obj->ob_type->tp_dict, __pyx_n_s_pyx_releasebuffer); if (releasebuffer_cobj) { releasebufferproc func = (releasebufferproc) PyCObject_AsVoidPtr(releasebuffer_cobj); Py_DECREF(releasebuffer_cobj); if (!func) goto fail; func(obj, view); return; } else { PyErr_Clear(); } } #endif goto nofail; #if PY_VERSION_HEX < 0x02060000 fail: #endif PyErr_WriteUnraisable(obj); nofail: Py_DECREF(obj); view->obj = NULL; } #endif /* PY_MAJOR_VERSION < 3 */ static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { PyObject *empty_list = 0; PyObject *module = 0; PyObject *global_dict = 0; PyObject *empty_dict = 0; PyObject *list; #if PY_VERSION_HEX < 0x03030000 PyObject *py_import; py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); if (!py_import) goto bad; #endif if (from_list) list = from_list; else { empty_list = PyList_New(0); if (!empty_list) goto bad; list = empty_list; } global_dict = PyModule_GetDict(__pyx_m); if (!global_dict) goto bad; empty_dict = PyDict_New(); if (!empty_dict) goto bad; #if PY_VERSION_HEX >= 0x02050000 { #if PY_MAJOR_VERSION >= 3 if (level == -1) { if (strchr(__Pyx_MODULE_NAME, '.')) { #if PY_VERSION_HEX < 0x03030000 PyObject *py_level = PyInt_FromLong(1); if (!py_level) goto bad; module = PyObject_CallFunctionObjArgs(py_import, name, global_dict, empty_dict, list, py_level, NULL); Py_DECREF(py_level); #else module = PyImport_ImportModuleLevelObject( name, global_dict, empty_dict, list, 1); #endif if (!module) { if (!PyErr_ExceptionMatches(PyExc_ImportError)) goto bad; PyErr_Clear(); } } level = 0; /* try absolute import on failure */ } #endif if (!module) { #if PY_VERSION_HEX < 0x03030000 PyObject *py_level = PyInt_FromLong(level); if (!py_level) goto bad; module = PyObject_CallFunctionObjArgs(py_import, name, global_dict, empty_dict, list, py_level, NULL); Py_DECREF(py_level); #else module = PyImport_ImportModuleLevelObject( name, global_dict, empty_dict, list, level); #endif } } #else if (level>0) { PyErr_SetString(PyExc_RuntimeError, "Relative import is not supported for Python <=2.4."); goto bad; } module = PyObject_CallFunctionObjArgs(py_import, name, global_dict, empty_dict, list, NULL); #endif bad: #if PY_VERSION_HEX < 0x03030000 Py_XDECREF(py_import); #endif Py_XDECREF(empty_list); Py_XDECREF(empty_dict); return module; } #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func) \ { \ func_type value = func(x); \ if (sizeof(target_type) < sizeof(func_type)) { \ if (unlikely(value != (func_type) (target_type) value)) { \ func_type zero = 0; \ PyErr_SetString(PyExc_OverflowError, \ (is_unsigned && unlikely(value < zero)) ? \ "can't convert negative value to " #target_type : \ "value too large to convert to " #target_type); \ return (target_type) -1; \ } \ } \ return (target_type) value; \ } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { const int neg_one = (int) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(int) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to int"); return (int) -1; } return (int) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(int)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (int) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to int"); return (int) -1; } if (sizeof(int) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(int, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(int) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(int, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(int)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(int) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(int) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(int) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(int, long, PyLong_AsLong) } else if (sizeof(int) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(int, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else int val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (int) -1; } } else { int val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (int) -1; val = __Pyx_PyInt_As_int(tmp); Py_DECREF(tmp); return val; } } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE int64 __Pyx_PyInt_As_int64(PyObject *x) { const int64 neg_one = (int64) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(int64) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(int64, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to int64"); return (int64) -1; } return (int64) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(int64)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (int64) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to int64"); return (int64) -1; } if (sizeof(int64) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(int64, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(int64) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(int64, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(int64)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(int64) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(int64) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(int64) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(int64, long, PyLong_AsLong) } else if (sizeof(int64) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(int64, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else int64 val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (int64) -1; } } else { int64 val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (int64) -1; val = __Pyx_PyInt_As_int64(tmp); Py_DECREF(tmp); return val; } } static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { const Py_intptr_t neg_one = (Py_intptr_t) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(Py_intptr_t) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(Py_intptr_t) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); } else if (sizeof(Py_intptr_t) <= sizeof(unsigned long long)) { return PyLong_FromUnsignedLongLong((unsigned long long) value); } } else { if (sizeof(Py_intptr_t) <= sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(Py_intptr_t) <= sizeof(long long)) { return PyLong_FromLongLong((long long) value); } } { int one = 1; int little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&value; return _PyLong_FromByteArray(bytes, sizeof(Py_intptr_t), little, !is_unsigned); } } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE Py_intptr_t __Pyx_PyInt_As_Py_intptr_t(PyObject *x) { const Py_intptr_t neg_one = (Py_intptr_t) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(Py_intptr_t) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(Py_intptr_t, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to Py_intptr_t"); return (Py_intptr_t) -1; } return (Py_intptr_t) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(Py_intptr_t)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (Py_intptr_t) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to Py_intptr_t"); return (Py_intptr_t) -1; } if (sizeof(Py_intptr_t) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(Py_intptr_t, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(Py_intptr_t) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(Py_intptr_t, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(Py_intptr_t)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(Py_intptr_t) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(Py_intptr_t) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(Py_intptr_t) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(Py_intptr_t, long, PyLong_AsLong) } else if (sizeof(Py_intptr_t) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(Py_intptr_t, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else Py_intptr_t val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (Py_intptr_t) -1; } } else { Py_intptr_t val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (Py_intptr_t) -1; val = __Pyx_PyInt_As_Py_intptr_t(tmp); Py_DECREF(tmp); return val; } } static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { const int neg_one = (int) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(int) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(int) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); } else if (sizeof(int) <= sizeof(unsigned long long)) { return PyLong_FromUnsignedLongLong((unsigned long long) value); } } else { if (sizeof(int) <= sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(int) <= sizeof(long long)) { return PyLong_FromLongLong((long long) value); } } { int one = 1; int little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&value; return _PyLong_FromByteArray(bytes, sizeof(int), little, !is_unsigned); } } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE size_t __Pyx_PyInt_As_size_t(PyObject *x) { const size_t neg_one = (size_t) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(size_t) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(size_t, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to size_t"); return (size_t) -1; } return (size_t) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(size_t)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (size_t) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to size_t"); return (size_t) -1; } if (sizeof(size_t) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(size_t, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(size_t) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(size_t, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(size_t)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(size_t) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(size_t) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(size_t) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(size_t, long, PyLong_AsLong) } else if (sizeof(size_t) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(size_t, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else size_t val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (size_t) -1; } } else { size_t val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (size_t) -1; val = __Pyx_PyInt_As_size_t(tmp); Py_DECREF(tmp); return val; } } #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return ::std::complex< float >(x, y); } #else static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return x + y*(__pyx_t_float_complex)_Complex_I; } #endif #else static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { __pyx_t_float_complex z; z.real = x; z.imag = y; return z; } #endif #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex a, __pyx_t_float_complex b) { return (a.real == b.real) && (a.imag == b.imag); } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; z.real = a.real + b.real; z.imag = a.imag + b.imag; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; z.real = a.real - b.real; z.imag = a.imag - b.imag; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; z.real = a.real * b.real - a.imag * b.imag; z.imag = a.real * b.imag + a.imag * b.real; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; float denom = b.real * b.real + b.imag * b.imag; z.real = (a.real * b.real + a.imag * b.imag) / denom; z.imag = (a.imag * b.real - a.real * b.imag) / denom; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex a) { __pyx_t_float_complex z; z.real = -a.real; z.imag = -a.imag; return z; } static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex a) { return (a.real == 0) && (a.imag == 0); } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex a) { __pyx_t_float_complex z; z.real = a.real; z.imag = -a.imag; return z; } #if 1 static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex z) { #if !defined(HAVE_HYPOT) || defined(_MSC_VER) return sqrtf(z.real*z.real + z.imag*z.imag); #else return hypotf(z.real, z.imag); #endif } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; float r, lnr, theta, z_r, z_theta; if (b.imag == 0 && b.real == (int)b.real) { if (b.real < 0) { float denom = a.real * a.real + a.imag * a.imag; a.real = a.real / denom; a.imag = -a.imag / denom; b.real = -b.real; } switch ((int)b.real) { case 0: z.real = 1; z.imag = 0; return z; case 1: return a; case 2: z = __Pyx_c_prodf(a, a); return __Pyx_c_prodf(a, a); case 3: z = __Pyx_c_prodf(a, a); return __Pyx_c_prodf(z, a); case 4: z = __Pyx_c_prodf(a, a); return __Pyx_c_prodf(z, z); } } if (a.imag == 0) { if (a.real == 0) { return a; } r = a.real; theta = 0; } else { r = __Pyx_c_absf(a); theta = atan2f(a.imag, a.real); } lnr = logf(r); z_r = expf(lnr * b.real - theta * b.imag); z_theta = theta * b.real + lnr * b.imag; z.real = z_r * cosf(z_theta); z.imag = z_r * sinf(z_theta); return z; } #endif #endif #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return ::std::complex< double >(x, y); } #else static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return x + y*(__pyx_t_double_complex)_Complex_I; } #endif #else static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { __pyx_t_double_complex z; z.real = x; z.imag = y; return z; } #endif #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex a, __pyx_t_double_complex b) { return (a.real == b.real) && (a.imag == b.imag); } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; z.real = a.real + b.real; z.imag = a.imag + b.imag; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; z.real = a.real - b.real; z.imag = a.imag - b.imag; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; z.real = a.real * b.real - a.imag * b.imag; z.imag = a.real * b.imag + a.imag * b.real; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; double denom = b.real * b.real + b.imag * b.imag; z.real = (a.real * b.real + a.imag * b.imag) / denom; z.imag = (a.imag * b.real - a.real * b.imag) / denom; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex a) { __pyx_t_double_complex z; z.real = -a.real; z.imag = -a.imag; return z; } static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex a) { return (a.real == 0) && (a.imag == 0); } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex a) { __pyx_t_double_complex z; z.real = a.real; z.imag = -a.imag; return z; } #if 1 static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex z) { #if !defined(HAVE_HYPOT) || defined(_MSC_VER) return sqrt(z.real*z.real + z.imag*z.imag); #else return hypot(z.real, z.imag); #endif } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; double r, lnr, theta, z_r, z_theta; if (b.imag == 0 && b.real == (int)b.real) { if (b.real < 0) { double denom = a.real * a.real + a.imag * a.imag; a.real = a.real / denom; a.imag = -a.imag / denom; b.real = -b.real; } switch ((int)b.real) { case 0: z.real = 1; z.imag = 0; return z; case 1: return a; case 2: z = __Pyx_c_prod(a, a); return __Pyx_c_prod(a, a); case 3: z = __Pyx_c_prod(a, a); return __Pyx_c_prod(z, a); case 4: z = __Pyx_c_prod(a, a); return __Pyx_c_prod(z, z); } } if (a.imag == 0) { if (a.real == 0) { return a; } r = a.real; theta = 0; } else { r = __Pyx_c_abs(a); theta = atan2(a.imag, a.real); } lnr = log(r); z_r = exp(lnr * b.real - theta * b.imag); z_theta = theta * b.real + lnr * b.imag; z.real = z_r * cos(z_theta); z.imag = z_r * sin(z_theta); return z; } #endif #endif static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { const long neg_one = (long) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(long) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(long) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); } else if (sizeof(long) <= sizeof(unsigned long long)) { return PyLong_FromUnsignedLongLong((unsigned long long) value); } } else { if (sizeof(long) <= sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(long) <= sizeof(long long)) { return PyLong_FromLongLong((long long) value); } } { int one = 1; int little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&value; return _PyLong_FromByteArray(bytes, sizeof(long), little, !is_unsigned); } } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { const long neg_one = (long) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(long) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to long"); return (long) -1; } return (long) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(long)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (long) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to long"); return (long) -1; } if (sizeof(long) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(long, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(long) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(long, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(long)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(long) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(long) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(long) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(long, long, PyLong_AsLong) } else if (sizeof(long) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(long, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else long val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (long) -1; } } else { long val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (long) -1; val = __Pyx_PyInt_As_long(tmp); Py_DECREF(tmp); return val; } } static int __Pyx_check_binary_version(void) { char ctversion[4], rtversion[4]; PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) { char message[200]; PyOS_snprintf(message, sizeof(message), "compiletime version %s of module '%.100s' " "does not match runtime version %s", ctversion, __Pyx_MODULE_NAME, rtversion); #if PY_VERSION_HEX < 0x02050000 return PyErr_Warn(NULL, message); #else return PyErr_WarnEx(NULL, message, 1); #endif } return 0; } #ifndef __PYX_HAVE_RT_ImportModule #define __PYX_HAVE_RT_ImportModule static PyObject *__Pyx_ImportModule(const char *name) { PyObject *py_name = 0; PyObject *py_module = 0; py_name = __Pyx_PyIdentifier_FromString(name); if (!py_name) goto bad; py_module = PyImport_Import(py_name); Py_DECREF(py_name); return py_module; bad: Py_XDECREF(py_name); return 0; } #endif #ifndef __PYX_HAVE_RT_ImportType #define __PYX_HAVE_RT_ImportType static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict) { PyObject *py_module = 0; PyObject *result = 0; PyObject *py_name = 0; char warning[200]; Py_ssize_t basicsize; #ifdef Py_LIMITED_API PyObject *py_basicsize; #endif py_module = __Pyx_ImportModule(module_name); if (!py_module) goto bad; py_name = __Pyx_PyIdentifier_FromString(class_name); if (!py_name) goto bad; result = PyObject_GetAttr(py_module, py_name); Py_DECREF(py_name); py_name = 0; Py_DECREF(py_module); py_module = 0; if (!result) goto bad; if (!PyType_Check(result)) { PyErr_Format(PyExc_TypeError, "%.200s.%.200s is not a type object", module_name, class_name); goto bad; } #ifndef Py_LIMITED_API basicsize = ((PyTypeObject *)result)->tp_basicsize; #else py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); if (!py_basicsize) goto bad; basicsize = PyLong_AsSsize_t(py_basicsize); Py_DECREF(py_basicsize); py_basicsize = 0; if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) goto bad; #endif if (!strict && (size_t)basicsize > size) { PyOS_snprintf(warning, sizeof(warning), "%s.%s size changed, may indicate binary incompatibility", module_name, class_name); #if PY_VERSION_HEX < 0x02050000 if (PyErr_Warn(NULL, warning) < 0) goto bad; #else if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad; #endif } else if ((size_t)basicsize != size) { PyErr_Format(PyExc_ValueError, "%.200s.%.200s has the wrong size, try recompiling", module_name, class_name); goto bad; } return (PyTypeObject *)result; bad: Py_XDECREF(py_module); Py_XDECREF(result); return NULL; } #endif static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { int start = 0, mid = 0, end = count - 1; if (end >= 0 && code_line > entries[end].code_line) { return count; } while (start < end) { mid = (start + end) / 2; if (code_line < entries[mid].code_line) { end = mid; } else if (code_line > entries[mid].code_line) { start = mid + 1; } else { return mid; } } if (code_line <= entries[mid].code_line) { return mid; } else { return mid + 1; } } static PyCodeObject *__pyx_find_code_object(int code_line) { PyCodeObject* code_object; int pos; if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) { return NULL; } pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) { return NULL; } code_object = __pyx_code_cache.entries[pos].code_object; Py_INCREF(code_object); return code_object; } static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { int pos, i; __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries; if (unlikely(!code_line)) { return; } if (unlikely(!entries)) { entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry)); if (likely(entries)) { __pyx_code_cache.entries = entries; __pyx_code_cache.max_count = 64; __pyx_code_cache.count = 1; entries[0].code_line = code_line; entries[0].code_object = code_object; Py_INCREF(code_object); } return; } pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) { PyCodeObject* tmp = entries[pos].code_object; entries[pos].code_object = code_object; Py_DECREF(tmp); return; } if (__pyx_code_cache.count == __pyx_code_cache.max_count) { int new_max = __pyx_code_cache.max_count + 64; entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc( __pyx_code_cache.entries, new_max*sizeof(__Pyx_CodeObjectCacheEntry)); if (unlikely(!entries)) { return; } __pyx_code_cache.entries = entries; __pyx_code_cache.max_count = new_max; } for (i=__pyx_code_cache.count; i>pos; i--) { entries[i] = entries[i-1]; } entries[pos].code_line = code_line; entries[pos].code_object = code_object; __pyx_code_cache.count++; Py_INCREF(code_object); } #include "compile.h" #include "frameobject.h" #include "traceback.h" static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = 0; PyObject *py_srcfile = 0; PyObject *py_funcname = 0; #if PY_MAJOR_VERSION < 3 py_srcfile = PyString_FromString(filename); #else py_srcfile = PyUnicode_FromString(filename); #endif if (!py_srcfile) goto bad; if (c_line) { #if PY_MAJOR_VERSION < 3 py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); #else py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); #endif } else { #if PY_MAJOR_VERSION < 3 py_funcname = PyString_FromString(funcname); #else py_funcname = PyUnicode_FromString(funcname); #endif } if (!py_funcname) goto bad; py_code = __Pyx_PyCode_New( 0, /*int argcount,*/ 0, /*int kwonlyargcount,*/ 0, /*int nlocals,*/ 0, /*int stacksize,*/ 0, /*int flags,*/ __pyx_empty_bytes, /*PyObject *code,*/ __pyx_empty_tuple, /*PyObject *consts,*/ __pyx_empty_tuple, /*PyObject *names,*/ __pyx_empty_tuple, /*PyObject *varnames,*/ __pyx_empty_tuple, /*PyObject *freevars,*/ __pyx_empty_tuple, /*PyObject *cellvars,*/ py_srcfile, /*PyObject *filename,*/ py_funcname, /*PyObject *name,*/ py_line, /*int firstlineno,*/ __pyx_empty_bytes /*PyObject *lnotab*/ ); Py_DECREF(py_srcfile); Py_DECREF(py_funcname); return py_code; bad: Py_XDECREF(py_srcfile); Py_XDECREF(py_funcname); return NULL; } static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = 0; PyObject *py_globals = 0; PyFrameObject *py_frame = 0; py_code = __pyx_find_code_object(c_line ? c_line : py_line); if (!py_code) { py_code = __Pyx_CreateCodeObjectForTraceback( funcname, c_line, py_line, filename); if (!py_code) goto bad; __pyx_insert_code_object(c_line ? c_line : py_line, py_code); } py_globals = PyModule_GetDict(__pyx_m); if (!py_globals) goto bad; py_frame = PyFrame_New( PyThreadState_GET(), /*PyThreadState *tstate,*/ py_code, /*PyCodeObject *code,*/ py_globals, /*PyObject *globals,*/ 0 /*PyObject *locals*/ ); if (!py_frame) goto bad; py_frame->f_lineno = py_line; PyTraceBack_Here(py_frame); bad: Py_XDECREF(py_code); Py_XDECREF(py_frame); } static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { while (t->p) { #if PY_MAJOR_VERSION < 3 if (t->is_unicode) { *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL); } else if (t->intern) { *t->p = PyString_InternFromString(t->s); } else { *t->p = PyString_FromStringAndSize(t->s, t->n - 1); } #else /* Python 3+ has unicode identifiers */ if (t->is_unicode | t->is_str) { if (t->intern) { *t->p = PyUnicode_InternFromString(t->s); } else if (t->encoding) { *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL); } else { *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1); } } else { *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1); } #endif if (!*t->p) return -1; ++t; } return 0; } static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(char* c_str) { return __Pyx_PyUnicode_FromStringAndSize(c_str, strlen(c_str)); } static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) { Py_ssize_t ignore; return __Pyx_PyObject_AsStringAndSize(o, &ignore); } static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT if ( #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII __Pyx_sys_getdefaultencoding_not_ascii && #endif PyUnicode_Check(o)) { #if PY_VERSION_HEX < 0x03030000 char* defenc_c; PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL); if (!defenc) return NULL; defenc_c = PyBytes_AS_STRING(defenc); #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII { char* end = defenc_c + PyBytes_GET_SIZE(defenc); char* c; for (c = defenc_c; c < end; c++) { if ((unsigned char) (*c) >= 128) { PyUnicode_AsASCIIString(o); return NULL; } } } #endif /*__PYX_DEFAULT_STRING_ENCODING_IS_ASCII*/ *length = PyBytes_GET_SIZE(defenc); return defenc_c; #else /* PY_VERSION_HEX < 0x03030000 */ if (PyUnicode_READY(o) == -1) return NULL; #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII if (PyUnicode_IS_ASCII(o)) { *length = PyUnicode_GET_DATA_SIZE(o); return PyUnicode_AsUTF8(o); } else { PyUnicode_AsASCIIString(o); return NULL; } #else /* __PYX_DEFAULT_STRING_ENCODING_IS_ASCII */ return PyUnicode_AsUTF8AndSize(o, length); #endif /* __PYX_DEFAULT_STRING_ENCODING_IS_ASCII */ #endif /* PY_VERSION_HEX < 0x03030000 */ } else #endif /* __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT */ #if !CYTHON_COMPILING_IN_PYPY #if PY_VERSION_HEX >= 0x02060000 if (PyByteArray_Check(o)) { *length = PyByteArray_GET_SIZE(o); return PyByteArray_AS_STRING(o); } else #endif #endif { char* result; int r = PyBytes_AsStringAndSize(o, &result, length); if (unlikely(r < 0)) { return NULL; } else { return result; } } } static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { int is_true = x == Py_True; if (is_true | (x == Py_False) | (x == Py_None)) return is_true; else return PyObject_IsTrue(x); } static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x) { PyNumberMethods *m; const char *name = NULL; PyObject *res = NULL; #if PY_MAJOR_VERSION < 3 if (PyInt_Check(x) || PyLong_Check(x)) #else if (PyLong_Check(x)) #endif return Py_INCREF(x), x; m = Py_TYPE(x)->tp_as_number; #if PY_MAJOR_VERSION < 3 if (m && m->nb_int) { name = "int"; res = PyNumber_Int(x); } else if (m && m->nb_long) { name = "long"; res = PyNumber_Long(x); } #else if (m && m->nb_int) { name = "int"; res = PyNumber_Long(x); } #endif if (res) { #if PY_MAJOR_VERSION < 3 if (!PyInt_Check(res) && !PyLong_Check(res)) { #else if (!PyLong_Check(res)) { #endif PyErr_Format(PyExc_TypeError, "__%.4s__ returned non-%.4s (type %.200s)", name, name, Py_TYPE(res)->tp_name); Py_DECREF(res); return NULL; } } else if (!PyErr_Occurred()) { PyErr_SetString(PyExc_TypeError, "an integer is required"); } return res; } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { Py_ssize_t ival; PyObject *x; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_CheckExact(b))) return PyInt_AS_LONG(b); #endif if (likely(PyLong_CheckExact(b))) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS switch (Py_SIZE(b)) { case -1: return -(sdigit)((PyLongObject*)b)->ob_digit[0]; case 0: return 0; case 1: return ((PyLongObject*)b)->ob_digit[0]; } #endif #endif #if PY_VERSION_HEX < 0x02060000 return PyInt_AsSsize_t(b); #else return PyLong_AsSsize_t(b); #endif } x = PyNumber_Index(b); if (!x) return -1; ival = PyInt_AsSsize_t(x); Py_DECREF(x); return ival; } static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { #if PY_VERSION_HEX < 0x02050000 if (ival <= LONG_MAX) return PyInt_FromLong((long)ival); else { unsigned char *bytes = (unsigned char *) &ival; int one = 1; int little = (int)*(unsigned char*)&one; return _PyLong_FromByteArray(bytes, sizeof(size_t), little, 0); } #else return PyInt_FromSize_t(ival); #endif } #endif /* Py_PYTHON_H */ healpy-1.8.1/healpy/src/_healpy_pixel_lib.cc0000644000175000017500000004102012351422052021272 0ustar zoncazonca00000000000000/* * This file is part of Healpy. * * Healpy is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpy is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpy; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about Healpy, see http://code.google.com/p/healpy */ /* This module provides Healpix functions to Python. It uses the healpix_cxx library. */ #include #include "arr.h" #include "healpix_base.h" #include "healpix_map.h" #include "_healpy_utils.h" #include "numpy/arrayobject.h" #include "numpy/ufuncobject.h" #include "numpy/noprefix.h" /* ang2pix */ templatestatic void ufunc_ang2pix(char **args, intp *dimensions, intp *steps, void *func) { intp n=dimensions[0]; intp is1=steps[0],is2=steps[1],is3=steps[2], os=steps[3]; char *ip1=args[0], *ip2=args[1], *ip3=args[2], *op=args[3]; Healpix_Base2 hb; long oldnside=-1; for(intp i=0; i static void ufunc_pix2ang(char **args, intp *dimensions, intp *steps, void *func) { register intp i, n=dimensions[0]; register intp is1=steps[0],is2=steps[1],os1=steps[2],os2=steps[3]; char *ip1=args[0], *ip2=args[1], *op1=args[2], *op2=args[3]; Healpix_Base2 hb; long oldnside=-1; for(i=0; i static void ufunc_pix2vec(char **args, intp *dimensions, intp *steps, void *func) { register intp i, n=dimensions[0]; register intp is1=steps[0],is2=steps[1],os1=steps[2],os2=steps[3],os3=steps[4]; char *ip1=args[0], *ip2=args[1], *op1=args[2], *op2=args[3], *op3=args[4]; Healpix_Base2 hb; long oldnside=-1; for(i=0; i static void ufunc_vec2pix(char **args, intp *dimensions, intp *steps, void *func) { register intp i, n=dimensions[0]; register intp is1=steps[0],is2=steps[1],is3=steps[2],is4=steps[3],os1=steps[4]; char *ip1=args[0], *ip2=args[1], *ip3=args[2], *ip4=args[3], *op1=args[4]; Healpix_Base2 hb; long oldnside=-1; for(i=0; i static void ufunc_get_interpol(char **args, intp *dimensions, intp *steps, void *func) { register intp i, n=dimensions[0]; register intp is1=steps[0],is2=steps[1],is3=steps[2], os1=steps[3],os2=steps[4],os3=steps[5],os4=steps[6], os5=steps[7],os6=steps[8],os7=steps[9],os8=steps[10]; char *ip1=args[0], *ip2=args[1], *ip3=args[2], *op1=args[3],*op2=args[4],*op3=args[5],*op4=args[6], *op5=args[7],*op6=args[8],*op7=args[9],*op8=args[10]; Healpix_Base2 hb; long oldnside=-1; for(i=0; i pix; fix_arr wgt; long nside = *(long*)ip1; if (nside!=oldnside) { oldnside=nside; hb.SetNside(nside, scheme); } try { pointing ptg = pointing(*(double*)ip2, *(double*)ip3); ptg.normalize(); hb.get_interpol(ptg, pix, wgt); *(long*)op1 = (long)pix[0]; *(long*)op2 = (long)pix[1]; *(long*)op3 = (long)pix[2]; *(long*)op4 = (long)pix[3]; *(double*)op5 = wgt[0]; *(double*)op6 = wgt[1]; *(double*)op7 = wgt[2]; *(double*)op8 = wgt[3]; } catch (PlanckError &e) { *(long*)op1 = -1; *(long*)op2 = -1; *(long*)op3 = -1; *(long*)op4 = -1; *(double*)op5 = NAN; *(double*)op6 = NAN; *(double*)op7 = NAN; *(double*)op8 = NAN; } } } /* get_neighbors */ template static void ufunc_get_neighbors(char **args, intp *dimensions, intp *steps, void *func) { register intp i, n=dimensions[0]; register intp is1=steps[0],is2=steps[1], os1=steps[2],os2=steps[3],os3=steps[4],os4=steps[5], os5=steps[6],os6=steps[7],os7=steps[8],os8=steps[9]; char *ip1=args[0], *ip2=args[1], *op1=args[2],*op2=args[3],*op3=args[4],*op4=args[5], *op5=args[6],*op6=args[7],*op7=args[8],*op8=args[9]; Healpix_Base2 hb; for(i=0; i pix; hb.SetNside(*(long*)ip1, scheme); try { hb.neighbors(*(long*)ip2, pix); *(long*)op1 = (long)pix[0]; *(long*)op2 = (long)pix[1]; *(long*)op3 = (long)pix[2]; *(long*)op4 = (long)pix[3]; *(long*)op5 = (long)pix[4]; *(long*)op6 = (long)pix[5]; *(long*)op7 = (long)pix[6]; *(long*)op8 = (long)pix[7]; } catch (PlanckError & e) { *(long*)op1 = -1; *(long*)op2 = -1; *(long*)op3 = -1; *(long*)op4 = -1; *(long*)op5 = -1; *(long*)op6 = -1; *(long*)op7 = -1; *(long*)op8 = -1; } } } /* max_pixrad */ static void ufunc_max_pixrad(char **args, intp *dimensions, intp *steps, void *func) { register intp i, n=dimensions[0]; register intp is1=steps[0],os1=steps[1]; char *ip1=args[0], *op1=args[1]; Healpix_Base2 hb; long oldnside=-1; for(i=0; inest swapping, etc.\n" "\n" "Available ufunc: _ang2pix_ring, _ang2pix_nest, _pix2ang_ring,\n" " _pix2ang_nest, _ring2nest, _nest2ring,\n" " _get_interpol_ring, _get_interpol_nest."); /* to define the ufunc */ static PyUFuncGenericFunction ang2pix_ring_functions[] = { ufunc_ang2pix }; static PyUFuncGenericFunction ang2pix_nest_functions[] = { ufunc_ang2pix }; static PyUFuncGenericFunction pix2ang_ring_functions[] = { ufunc_pix2ang }; static PyUFuncGenericFunction pix2ang_nest_functions[] = { ufunc_pix2ang }; static PyUFuncGenericFunction vec2pix_ring_functions[] = { ufunc_vec2pix }; static PyUFuncGenericFunction vec2pix_nest_functions[] = { ufunc_vec2pix }; static PyUFuncGenericFunction pix2vec_ring_functions[] = { ufunc_pix2vec }; static PyUFuncGenericFunction pix2vec_nest_functions[] = { ufunc_pix2vec }; static PyUFuncGenericFunction ring2nest_functions[] = { ufunc_ring2nest }; static PyUFuncGenericFunction nest2ring_functions[] = { ufunc_nest2ring }; static PyUFuncGenericFunction get_interpol_ring_functions[] = { ufunc_get_interpol }; static PyUFuncGenericFunction get_interpol_nest_functions[] = { ufunc_get_interpol }; static PyUFuncGenericFunction get_neighbors_ring_functions[] = { ufunc_get_neighbors }; static PyUFuncGenericFunction get_neighbors_nest_functions[] = { ufunc_get_neighbors }; static PyUFuncGenericFunction max_pixrad_functions[] = { ufunc_max_pixrad }; static void * blank_data[] = { (void *)NULL }; static char ang2pix_signatures[] = { PyArray_LONG, PyArray_DOUBLE, PyArray_DOUBLE, PyArray_LONG }; static char pix2ang_signatures[] = { PyArray_LONG, PyArray_LONG, PyArray_DOUBLE, PyArray_DOUBLE }; static char pix2vec_signatures[] = { PyArray_LONG, PyArray_LONG, PyArray_DOUBLE, PyArray_DOUBLE, PyArray_DOUBLE }; static char vec2pix_signatures[] = { PyArray_LONG, PyArray_DOUBLE, PyArray_DOUBLE, PyArray_DOUBLE, PyArray_LONG }; static char ring2nest_signatures[] = { PyArray_LONG, PyArray_LONG, PyArray_LONG }; static char get_interpol_signatures[] = { PyArray_LONG, PyArray_DOUBLE, PyArray_DOUBLE, PyArray_LONG, PyArray_LONG, PyArray_LONG, PyArray_LONG, PyArray_DOUBLE, PyArray_DOUBLE, PyArray_DOUBLE, PyArray_DOUBLE }; static char get_neighbors_ring_signatures[] = { PyArray_LONG, PyArray_LONG, // input PyArray_LONG, PyArray_LONG, PyArray_LONG, PyArray_LONG, // output PyArray_LONG, PyArray_LONG, PyArray_LONG, PyArray_LONG // output }; static char get_neighbors_nest_signatures[] = { PyArray_LONG, PyArray_LONG, // input PyArray_LONG, PyArray_LONG, PyArray_LONG, PyArray_LONG, // output PyArray_LONG, PyArray_LONG, PyArray_LONG, PyArray_LONG // output }; static char max_pixrad_signatures[] = { PyArray_LONG, PyArray_DOUBLE }; #if PY_MAJOR_VERSION >= 3 static PyModuleDef moduledef = { PyModuleDef_HEAD_INIT, "_healpy_pixel_lib", NULL, -1, NULL }; #endif #if PY_MAJOR_VERSION < 3 #define FREE_MODULE_AND_FAIL do { return; } while(0) #else #define FREE_MODULE_AND_FAIL do { Py_DECREF(m); return NULL; } while(0) #endif PyMODINIT_FUNC #if PY_MAJOR_VERSION < 3 init_healpy_pixel_lib(void) #else PyInit__healpy_pixel_lib(void) #endif { PyObject *m; import_array(); import_ufunc(); #if PY_MAJOR_VERSION < 3 m = Py_InitModule3("_healpy_pixel_lib", NULL, docstring); if (!m) return; #else m = PyModule_Create(&moduledef); if (!m) return NULL; #endif if (PyModule_AddObject(m, "_ang2pix_ring", PyUFunc_FromFuncAndData( ang2pix_ring_functions, blank_data, ang2pix_signatures, 1, 3, 1, PyUFunc_None, CP_("_ang2pix_ring"), CP_("nside,theta,phi [rad] -> ipix (RING)"),0)) < 0) FREE_MODULE_AND_FAIL; if (PyModule_AddObject(m, "_ang2pix_nest", PyUFunc_FromFuncAndData( ang2pix_nest_functions, blank_data, ang2pix_signatures, 1, 3, 1, PyUFunc_None, CP_("_ang2pix_nest"), CP_("nside,theta,phi [rad] -> ipix (NEST)"),0)) < 0) FREE_MODULE_AND_FAIL; if (PyModule_AddObject(m, "_pix2ang_ring", PyUFunc_FromFuncAndData( pix2ang_ring_functions, blank_data, pix2ang_signatures, 1, 2, 2, PyUFunc_None, CP_("_pix2ang_ring"), CP_("nside,ipix -> theta,phi [rad] (RING)"),0)) < 0) FREE_MODULE_AND_FAIL; if (PyModule_AddObject(m, "_pix2ang_nest", PyUFunc_FromFuncAndData( pix2ang_nest_functions, blank_data, pix2ang_signatures, 1, 2, 2, PyUFunc_None, CP_("_pix2ang_nest"), CP_("nside,ipix -> theta,phi [rad] (NEST)"),0)) < 0) FREE_MODULE_AND_FAIL; //========= if (PyModule_AddObject(m, "_vec2pix_ring", PyUFunc_FromFuncAndData( vec2pix_ring_functions, blank_data, vec2pix_signatures, 1, 4, 1, PyUFunc_None, CP_("_vec2pix_ring"), CP_("nside,x,y,z -> ipix (RING)"),0)) < 0) FREE_MODULE_AND_FAIL; if (PyModule_AddObject(m, "_vec2pix_nest", PyUFunc_FromFuncAndData( vec2pix_nest_functions, blank_data, vec2pix_signatures, 1, 4, 1, PyUFunc_None, CP_("_vec2pix_nest"), CP_("nside,x,y,z -> ipix (NEST)"),0)) < 0) FREE_MODULE_AND_FAIL; if (PyModule_AddObject(m, "_pix2vec_ring", PyUFunc_FromFuncAndData( pix2vec_ring_functions, blank_data, pix2vec_signatures, 1, 2, 3, PyUFunc_None, CP_("_pix2vec_ring"), CP_("nside,ipix -> x,y,z (RING)"),0)) < 0) FREE_MODULE_AND_FAIL; if (PyModule_AddObject(m, "_pix2vec_nest", PyUFunc_FromFuncAndData( pix2vec_nest_functions, blank_data, pix2vec_signatures, 1, 2, 3, PyUFunc_None, CP_("_pix2vec_nest"), CP_("nside,ipix -> x,y,z (NEST)"),0)) < 0) FREE_MODULE_AND_FAIL; //============= if (PyModule_AddObject(m, "_ring2nest", PyUFunc_FromFuncAndData( ring2nest_functions, blank_data, ring2nest_signatures, 1, 2, 1, PyUFunc_None, CP_("_ring2nest"), CP_("ipix(ring) -> ipix(nest)"),0)) < 0) FREE_MODULE_AND_FAIL; if (PyModule_AddObject(m, "_nest2ring", PyUFunc_FromFuncAndData( nest2ring_functions, blank_data, ring2nest_signatures, 1, 2, 1, PyUFunc_None, CP_("_nest2ring"), CP_("ipix(nest) -> ipix(ring)"),0)) < 0) FREE_MODULE_AND_FAIL; if (PyModule_AddObject(m, "_get_interpol_ring", PyUFunc_FromFuncAndData( get_interpol_ring_functions, blank_data, get_interpol_signatures, 1, 3, 8, PyUFunc_None, CP_("_get_interpol_ring"), CP_("nside,theta,phi->4 nearest pixels+4weights"),0)) < 0) FREE_MODULE_AND_FAIL; if (PyModule_AddObject(m, "_get_interpol_nest", PyUFunc_FromFuncAndData( get_interpol_nest_functions, blank_data, get_interpol_signatures, 1, 3, 8, PyUFunc_None, CP_("_get_interpol_nest"), CP_("nside,theta,phi->4 nearest pixels+4weights"),0)) < 0) FREE_MODULE_AND_FAIL; if (PyModule_AddObject(m, "_get_neighbors_ring", PyUFunc_FromFuncAndData( get_neighbors_ring_functions, blank_data, get_neighbors_ring_signatures, 1, 2, 8, PyUFunc_None, CP_("_get_neigbors_ring"), CP_("nside, ipix [rad] -> 8 neighbors"),0)) < 0) FREE_MODULE_AND_FAIL; if (PyModule_AddObject(m, "_get_neighbors_nest", PyUFunc_FromFuncAndData( get_neighbors_nest_functions, blank_data, get_neighbors_nest_signatures, 1, 2, 8, PyUFunc_None, CP_("_get_neigbors_nest"), CP_("nside, ipix [rad] -> 8 neighbors"),0)) < 0) FREE_MODULE_AND_FAIL; if (PyModule_AddObject(m, "_max_pixrad", PyUFunc_FromFuncAndData( max_pixrad_functions, blank_data, max_pixrad_signatures, 1, 1, 1, PyUFunc_None, CP_("max_pixrad"), CP_("nside -> max_distance to pixel corners from center)"),0)) < 0) FREE_MODULE_AND_FAIL; if (PyModule_AddObject(m, "UNSEEN", PyFloat_FromDouble(Healpix_undef)) < 0) FREE_MODULE_AND_FAIL; #if PY_MAJOR_VERSION >= 3 return m; #endif } healpy-1.8.1/healpy/src/_healpy_sph_transform_lib.cc0000644000175000017500000007372312346125412023061 0ustar zoncazonca00000000000000/* * This file is part of Healpy. * * Healpy is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpy is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpy; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about Healpy, see http://code.google.com/p/healpy */ /* This module provides Healpix functions to Python. It uses the healpix_cxx library. */ #include #include "numpy/arrayobject.h" #include #include #include "arr.h" #include "alm.h" #include "lsconstants.h" #include "healpix_map.h" #include "xcomplex.h" #include "alm_healpix_tools.h" #include "powspec.h" #include "alm_powspec_tools.h" #include "healpix_data_io.h" #include "_healpy_utils.h" #define IS_DEBUG_ON 0 /* Some helpful macro */ #define XMALLOC(X,Y,Z) if( !(X = (Y*)malloc(Z*sizeof(Y))) ) { PyErr_NoMemory(); goto fail;} #define XNEW(X,Y,Z) if( !(X = new Y[Z]) ) { PyErr_NoMemory(); goto fail; } #define XFREE(X) if( X ) free(X); #define XDELETE(X) if( X ) delete[] X; #define DBGPRINTF(X,...) if( IS_DEBUG_ON ) printf(X, ## __VA_ARGS__) static long nside2npix(long nside) { return 12*nside*nside; } static long npix2nside(long npix) { long nside; long npix2; nside = (long)floor(sqrt(npix/12.)); npix2 = 12*nside*nside; if( npix2 == npix ) return nside; else return -1; } /* Helper functions */ /* static void getij(long n, long idx, long *i, long *j) { *i = (long)ceil(((2*n+1)-sqrt((2*n+1)*(2*n+1)-8*(idx-n)))/2); *j = idx - (*i)*(2*n+1- (*i) )/2; } */ static long getidx(long n, long i, long j) { long tmp; if( i > j ) {tmp = j; j=i; i=tmp;} return i*(2*n-1-i)/2+j; } static long getn(long s) { long x; x = (long)floor((-1+sqrt(1+8*s))/2); if( (x*(x+1)/2) != s ) return -1; else return x; } static void cholesky(int n, double *data, double *res) { int i,j,k; double sum; for( j=0; jj) { sum = data[getidx(n,i,j)]; for( k=0; kflags&NPY_C_CONTIGUOUS, "Array must be C contiguous for this operation."); if( polarisation ) healpyAssertValue(mapQin->flags&mapUin->flags&NPY_C_CONTIGUOUS, "Array must be C contiguous for this operation."); /* Check type of data : must be double ('d') */ healpyAssertType(mapIin->descr->type == 'd', "Type must be Float64 for this function"); if( polarisation ) { healpyAssertType(mapQin->descr->type == 'd', "Type must be Float64 for this function"); healpyAssertType(mapUin->descr->type == 'd', "Type must be Float64 for this function"); } /* Check number of dimension : must be 1 */ healpyAssertType(mapIin->nd==1,"Array must be 1D."); npix = mapIin->dimensions[0]; if( polarisation ) { healpyAssertType((mapQin->nd==1)&&(mapUin->nd==1),"Array must be 1D."); healpyAssertType((mapQin->dimensions[0]==npix)&& (mapQin->dimensions[0]==npix), "All maps must have same dimension."); } /* Check that the number of pixel is ok (12*nside^2) */ nside = npix2nside(npix); healpyAssertValue(nside>=0,"Number of pixel not valid for healpix map."); /* lmax and mmax */ if( lmax < 0 ) lmax = 3*nside-1; if( mmax <0 || mmax > lmax ) mmax = lmax; Healpix_Map mapI, mapQ, mapU; { arr arr_map((double*)mapIin->data, npix); mapI.Set(arr_map, RING); } if(polarisation) { arr arr_map((double*)mapQin->data, npix); mapQ.Set(arr_map, RING); } if( polarisation ) { arr arr_map((double*)mapUin->data, npix); mapU.Set(arr_map, RING); } npy_intp szalm = Alm >::Num_Alms(lmax,mmax); PyArrayObject *almIout = (PyArrayObject*)PyArray_SimpleNew (1, (npy_intp*)&szalm, PyArray_CDOUBLE); if( !almIout ) return NULL; PyArrayObject *almGout=NULL, *almCout=NULL; if( polarisation ) { almGout = (PyArrayObject*)PyArray_SimpleNew(1, (npy_intp*)&szalm, PyArray_CDOUBLE); if( !almGout ) { Py_DECREF(almIout); return NULL; } almCout = (PyArrayObject*)PyArray_SimpleNew(1, (npy_intp*)&szalm, PyArray_CDOUBLE); if( !almCout ) { Py_DECREF(almIout); Py_DECREF(almGout); return NULL; } } Alm< xcomplex > almIalm; { arr< xcomplex > alm_arr((xcomplex*)almIout->data, szalm); almIalm.Set(alm_arr, lmax, mmax); } Alm< xcomplex > almGalm; if( polarisation ) { arr< xcomplex > alm_arr((xcomplex*)almGout->data, szalm); almGalm.Set(alm_arr, lmax, mmax); } Alm< xcomplex > almCalm; if( polarisation ) { arr< xcomplex > alm_arr((xcomplex*)almCout->data, szalm); almCalm.Set(alm_arr, lmax, mmax); } arr weight; if( use_weights ) { read_weight_ring(datapath, nside, weight); for (tsize m=0; mflags&NPY_C_CONTIGUOUS, "Array must be C contiguous for this operation."); if( polarisation ) healpyAssertValue(almGin->flags&almCin->flags&NPY_C_CONTIGUOUS, "Array must be C contiguous for this operation."); /* Check type of data : must be double, real ('d') or complex ('D') */ healpyAssertType(almIin->descr->type == 'D', "Type must be Complex for this function"); if( polarisation ) { healpyAssertType(almGin->descr->type == 'D', "Type must be Complex for this function"); healpyAssertType(almCin->descr->type == 'D', "Type must be Complex for this function"); } /* Check number of dimension : must be 1 */ healpyAssertType(almIin->nd==1,"The a_lm must be a 1D array."); if( polarisation ) { healpyAssertType(almGin->nd==1,"The a_lm must be a 1D array."); healpyAssertType(almCin->nd==1,"The a_lm must be a 1D array."); } /* Need to have lmax and mmax defined */ if( lmax < 0 ) { /* Check that the dimension is compatible with lmax=mmax */ long imax = almIin->dimensions[0] - 1; double ell = (-3.+sqrt(9.+8.*imax))/2.; healpyAssertType(ell==floor(ell), "Wrong alm size (or give lmax and mmax)"); lmax=(int)floor(ell); mmax = lmax; } if( mmax < 0 || mmax > lmax) mmax = lmax; /* Check lmax and mmax are ok compared to alm.size */ int szalm = Alm< xcomplex >::Num_Alms(lmax,mmax); healpyAssertValue(almIin->dimensions[0]==szalm,"Wrong alm size."); if( polarisation ) { healpyAssertValue(almGin->dimensions[0]==szalm,"Wrong alm size."); healpyAssertValue(almCin->dimensions[0]==szalm,"Wrong alm size."); } /* Now we can build an Alm and give it to alm2map_iter */ Alm< xcomplex > almIalm; { arr< xcomplex > alm_arr((xcomplex*)almIin->data, szalm); almIalm.Set(alm_arr, lmax, mmax); } Alm< xcomplex > almGalm; if( polarisation ) { arr< xcomplex > alm_arr((xcomplex*)almGin->data, szalm); almGalm.Set(alm_arr, lmax, mmax); } Alm< xcomplex > almCalm; if( polarisation ) { arr< xcomplex > alm_arr((xcomplex*)almCin->data, szalm); almCalm.Set(alm_arr, lmax, mmax); } /* We must prepare the map */ npy_intp npix = nside2npix(nside); PyArrayObject *mapIout = NULL; mapIout = (PyArrayObject*)PyArray_SimpleNew(1, (npy_intp*)&npix, PyArray_DOUBLE); if( !mapIout ) return NULL; PyArrayObject *mapQout = NULL; if( polarisation ) { mapQout = (PyArrayObject*)PyArray_SimpleNew(1, (npy_intp*)&npix, PyArray_DOUBLE); if( !mapQout ) return NULL; } PyArrayObject *mapUout = NULL; if( polarisation ) { mapUout = (PyArrayObject*)PyArray_SimpleNew(1, (npy_intp*)&npix, PyArray_DOUBLE); if( !mapUout ) return NULL; } Healpix_Map mapI; { arr arr_map((double*)mapIout->data, npix); mapI.Set(arr_map, RING); } Healpix_Map mapQ; if( polarisation ) { arr arr_map((double*)mapQout->data, npix); mapQ.Set(arr_map, RING); } Healpix_Map mapU; if( polarisation ) { arr arr_map((double*)mapUout->data, npix); mapU.Set(arr_map, RING); } /* We now call alm2map */ if( !polarisation ) { double offset = almIalm(0,0).real()/sqrt(fourpi); xcomplex almI00 = almIalm(0,0); almIalm(0,0) = 0; alm2map(almIalm,mapI); mapI.Add(offset); almIalm(0,0) = almI00; } else { double offset = almIalm(0,0).real()/sqrt(fourpi); xcomplex almI00 = almIalm(0,0); almIalm(0,0) = 0; alm2map_pol(almIalm,almGalm,almCalm,mapI,mapQ,mapU); mapI.Add(offset); almIalm(0,0) = almI00; } /* We now return the map */ if( !polarisation ) return Py_BuildValue("N",mapIout); else return Py_BuildValue("NNN",mapIout,mapQout,mapUout); } /*********************************************************************** alm2map_der1 input: alm, nside, output: map in RING scheme */ static PyObject *healpy_alm2map_der1(PyObject *self, PyObject *args, PyObject *kwds) { PyArrayObject *almIin = NULL; int nside = 64; int lmax = -1; int mmax = -1; static const char* kwlist[] = {"","nside", "lmax", "mmax", NULL}; if (!PyArg_ParseTupleAndKeywords(args, kwds, "O!|iii", (char **)kwlist, &PyArray_Type, &almIin, &nside, &lmax, &mmax)) { return NULL; } /* Check array is contiguous */ healpyAssertValue(almIin->flags & NPY_C_CONTIGUOUS, "Array must be C contiguous for this operation."); /* Check type of data : must be double, real ('d') or complex ('D') */ healpyAssertType(almIin->descr->type == 'D', "Type must be Complex for this function"); /* Check number of dimension : must be 1 */ healpyAssertValue(almIin->nd==1, "The map must be a 1D array"); /* Need to have lmax and mmax defined */ if( lmax < 0 ) { /* Check that the dimension is compatible with lmax=mmax */ long imax = almIin->dimensions[0] - 1; double ell = (-3.+sqrt(9.+8.*imax))/2.; healpyAssertValue(ell == floor(ell), "Wrong alm size (or give lmax and mmax)."); lmax=(int)floor(ell); mmax = lmax; } if( mmax < 0 || mmax > lmax) { mmax = lmax; } /* Check lmax and mmax are ok compared to alm.size */ int szalm = Alm< xcomplex >::Num_Alms(lmax,mmax); healpyAssertValue(almIin->dimensions[0] == szalm,"Wrong alm size."); /* Now we can build an Alm and give it to alm2map_iter */ Alm< xcomplex > almIalm; { arr< xcomplex > alm_arr((xcomplex*)almIin->data, szalm); almIalm.Set(alm_arr, lmax, mmax); } /* We must prepare the map */ npy_intp npix = nside2npix(nside); PyArrayObject *mapIout = NULL; mapIout = (PyArrayObject*)PyArray_SimpleNew(1, (npy_intp*)&npix, PyArray_DOUBLE); if( !mapIout ) return NULL; Healpix_Map mapI; { arr arr_map((double*)mapIout->data, npix); mapI.Set(arr_map, RING); } PyArrayObject *mapDtheta = NULL; mapDtheta = (PyArrayObject*)PyArray_SimpleNew(1, (npy_intp*)&npix, PyArray_DOUBLE); if( !mapDtheta ) return NULL; Healpix_Map mapDt; { arr arr_map((double*)mapDtheta->data, npix); mapDt.Set(arr_map, RING); } PyArrayObject *mapDphi = NULL; mapDphi = (PyArrayObject*)PyArray_SimpleNew(1, (npy_intp*)&npix, PyArray_DOUBLE); if( !mapDphi ) return NULL; Healpix_Map mapDp; { arr arr_map((double*)mapDphi->data, npix); mapDp.Set(arr_map, RING); } /* We now call alm2map_der1 */ double offset = almIalm(0,0).real()/sqrt(fourpi); xcomplex almI00 = almIalm(0,0); almIalm(0,0) = 0; alm2map_der1(almIalm,mapI,mapDt,mapDp); mapI.Add(offset); almIalm(0,0) = almI00; return Py_BuildValue("NNN",mapIout,mapDtheta,mapDphi); } /* Functions needed to create alm from cl in the polarised case. The idea is as follow: - this function take as argument a sequence of n(n+1)/2 arrays, where n is the number of components - these arrays represents the symetric correlation matrices of n components - this functions use the cholesky decomposition to compute the */ /*********************************************************************** synalm input: a sequence of Cl(i,j) where 0<=i,j=j are given. output: alm */ static PyObject *healpy_synalm(PyObject *self, PyObject *args, PyObject *kwds) { int lmax=-1, mmax=-1; int ncl, nalm; const double sqrt_two = sqrt(2.); /* Take also a sequence of unit variance random vectors for the alm. */ static const char* kwlist[] = {"","", "", "", NULL}; PyObject *t = NULL; PyObject *u = NULL; DBGPRINTF("Parsing keyword\n"); if( !PyArg_ParseTupleAndKeywords(args, kwds, "OOii", (char **)kwlist, &t, &u, &lmax, &mmax) ) return NULL; DBGPRINTF("Checking sequence\n"); if( (!PySequence_Check(t)) || (!PySequence_Check(u)) ) return NULL; ncl = PySequence_Size(t); nalm = getn(ncl); DBGPRINTF("Sequence size: ncl=%d, nalm=%d\n", ncl, nalm); healpyAssertType((nalm>0)&&(PySequence_Size(u)==nalm), "First argument must be a sequence with " "n(n+1)/2 elements, and second argument " "a sequence with n elements."); DBGPRINTF("Allocating memory\n"); /* Memory allocation */ PyArrayObject **cls = NULL; PyArrayObject **alms = NULL; Alm< xcomplex > *almalms = NULL; double *mat = NULL; double *res = NULL; XMALLOC(cls, PyArrayObject*, ncl); XMALLOC(alms, PyArrayObject*, nalm); XNEW(almalms, Alm< xcomplex >, nalm); XMALLOC(mat, double, ncl); XMALLOC(res, double, ncl); /* From now on, I should do a 'goto fail' to return from the function in order to free allocated memory */ /* Get the cls objects. If an object is None, set the array to NULL */ for( int i=0; ilmax ) mmax=lmax; DBGPRINTF("lmax=%d, mmax=%d\n", lmax, mmax); /* Now, I check the arrays cls and alms are 1D and complex for alms */ DBGPRINTF("Check dimension and size of cls\n"); for( int i=0; ind != 1) //|| ((cls[i]->descr->type != 'd') && (cls[i]->descr->type != 'f')) ) || (cls[i]->descr->type != 'd') ) { PyErr_SetString(PyExc_TypeError, "Type of cls must be float64 and arrays must be 1D."); goto fail; } } DBGPRINTF("Check dimension and size of alms\n"); for( int i=0; ind != 1) || (alms[i]->descr->type != 'D') ) { PyErr_SetString(PyExc_TypeError, "Type of alms must be complex128 and arrays must be 1D."); goto fail; } } /* Now, I check that all alms have the same size and that it is compatible with lmax and mmax */ DBGPRINTF("Check alms have identical size\n"); int szalm; szalm = -1; for( int i=0; idimensions[0]; else if( alms[i]->dimensions[0] != szalm ) { PyErr_SetString(PyExc_ValueError, "All alms arrays must have same size."); goto fail; } } if( szalm != int(Alm< xcomplex >::Num_Alms(lmax,mmax)) ) { PyErr_SetString(PyExc_ValueError, "lmax and mmax are not compatible with size of alms."); goto fail; } DBGPRINTF("Alms have all size %d\n", szalm); /* Set the objects Alm */ DBGPRINTF("Set alm objects\n"); for( int i=0; i > * alm_arr; alm_arr = new arr< xcomplex >((xcomplex*)alms[i]->data, szalm); DBGPRINTF("Set...\n"); almalms[i].Set(*alm_arr, lmax, mmax); delete alm_arr; } /* Now, I can loop over l, for each l, I make the Cholesky decomposition of the correlation matrix given by the cls[*][l] */ DBGPRINTF("Start loop over l\n"); for( int l=0; l<=lmax; l++ ) { DBGPRINTF("l=%d\n", l); /* fill the matrix of cls */ for( int i=0; idimensions[0] < l ) mat[i] = 0.0; else { if( cls[i]->descr->type == 'f' ) mat[i] = (double)(*((float*)PyArray_GETPTR1(cls[i],l))); else mat[i] = *((double*)PyArray_GETPTR1(cls[i],l)); } } /* Make the Cholesky decomposition */ cholesky(nalm, mat, res); if( l == 400 ) { DBGPRINTF("matrice: "); for( int i=0; i=0; i-- ) { double x; x = 0.0; almalms[i](l,0).im = 0.0; for( int j=0; j<=i; j++ ) x += res[getidx(nalm,i,j)]*almalms[j](l,0).re; almalms[i](l,0).re = x; DBGPRINTF(" %lg %lg ;", almalms[i](l,0).re, almalms[i](l,0).im); } DBGPRINTF("\n"); /* m > 1 */ for( int m=1; m<=l; m++ ) { DBGPRINTF(" m=%d: ", m); for( int i=nalm-1; i>=0; i-- ) { double xr, xi; xi = xr = 0.0; for( int j=0; j<=i; j++ ) { xr += res[getidx(nalm,i,j)]*almalms[j](l,m).re; xi += res[getidx(nalm,i,j)]*almalms[j](l,m).im; DBGPRINTF("(res[%d]=%lg, alm=%lg,%lg) %lg %lg", (int)getidx(nalm,i,j), res[getidx(nalm,i,j)], almalms[j](l,m).re, almalms[j](l,m).im, xr, xi); } almalms[i](l,m).re = xr/sqrt_two; almalms[i](l,m).im = xi/sqrt_two; DBGPRINTF(" xre,xim[%d]: %lg %lg ;", i, almalms[i](l,m).re, almalms[i](l,m).im); } DBGPRINTF("\n"); } } /* Should be finished now... */ XFREE(cls); XFREE(alms); XDELETE(almalms); XFREE(mat); XFREE(res); Py_INCREF(Py_None); return Py_None; /* To be done before returning */ fail: XFREE(cls); XFREE(alms); XDELETE(almalms); XFREE(mat); XFREE(res); return NULL; } PyObject *healpy_getn(PyObject *self, PyObject *args) { long s; healpyAssertType (PyArg_ParseTuple(args, "l", &s), "This function takes an integer as argument."); long n = getn(s); return Py_BuildValue("l",n); } static PyMethodDef methods[] = { {"_map2alm", (PyCFunction)healpy_map2alm, METH_VARARGS | METH_KEYWORDS, "Compute alm or cl from an input map.\n" "The input map is assumed to be ordered in RING.\n" "anafast(map,lmax=3*nside-1,mmax=lmax,cl=False,\n" " iter=3,use_weights=False,data_path=None"}, {"_alm2map", (PyCFunction)healpy_alm2map, METH_VARARGS | METH_KEYWORDS, "Compute a map from alm.\n" "The output map is ordered in RING scheme.\n" "alm2map(alm,nside=64,lmax=-1,mmax=-1)"}, {"_alm2map_der1", (PyCFunction)healpy_alm2map_der1, METH_VARARGS | METH_KEYWORDS, "Compute a map and derivatives from alm.\n" "The output map is ordered in RING scheme.\n" "alm2map_der1(alm,nside=64,lmax=-1,mmax=-1)"}, {"_synalm", (PyCFunction)healpy_synalm, METH_VARARGS | METH_KEYWORDS, "Compute alm's given cl's and unit variance random arrays.\n"}, {"_getn", healpy_getn, METH_VARARGS, "Compute number n such that n(n+1)/2 is equal to the argument.\n"}, {NULL, NULL, 0, NULL} /* Sentinel */ }; #if PY_MAJOR_VERSION >= 3 static PyModuleDef moduledef = { PyModuleDef_HEAD_INIT, "_healpy_sph_transform_lib", NULL, -1, methods }; #endif PyMODINIT_FUNC #if PY_MAJOR_VERSION < 3 init_healpy_sph_transform_lib(void) #else PyInit__healpy_sph_transform_lib(void) #endif { import_array(); #if PY_MAJOR_VERSION < 3 Py_InitModule("_healpy_sph_transform_lib", methods); #else return PyModule_Create(&moduledef); #endif } healpy-1.8.1/healpy/src/_pixelfunc.pyx0000644000175000017500000000753712351601276020237 0ustar zoncazonca00000000000000# Wrapper around the geometry methods in Healpix_base class import numpy as np cimport numpy as np from libcpp cimport bool cimport cython from _common cimport int64, Healpix_Ordering_Scheme, RING, NEST, SET_NSIDE, T_Healpix_Base def ringinfo(nside, np.ndarray[int64, ndim=1] ring not None): """Get information for rings Rings are specified by a positive integer, 1 <= ring <= 4*nside-1. Parameters ---------- nside : int The healpix nside parameter, must be a power of 2, less than 2**30 ring : int, scalar or array-like The ring number Returns ------- startpix : int64, length equal to that of *ring* Starting pixel identifier (NEST ordering) ringpix : int64, length equal to that of *ring* Number of pixels in ring costheta : float, length equal to that of *ring* Cosine of the co-latitude sintheta : float, length equal to that of *ring* Sine of the co-latitude shifted : bool, length equal to that of *ring* If True, the center of the first pixel is not at phi=0 Example ------- >>> import healpy as hp >>> import numpy as np >>> nside = 2 >>> hp.ringinfo(nside, np.arange(4*nside-1)) (array([ 0, 0, 4, 12, 20, 28, 36]), array([0, 4, 8, 8, 8, 8, 8]), array([ 1. , 0.91666667, 0.66666667, 0.33333333, 0. , -0.33333333, -0.66666667]), array([ 0. , 0.39965263, 0.74535599, 0.94280904, 1. , 0.94280904, 0.74535599]), array([ True, True, True, False, True, False, True], dtype=bool)) """ if not isnsideok(nside): raise ValueError('Wrong nside value, must be a power of 2, less than 2**30') cdef Healpix_Ordering_Scheme scheme = NEST cdef T_Healpix_Base[int64] hb = T_Healpix_Base[int64](nside, scheme, SET_NSIDE) num = ring.shape[0] cdef np.ndarray[int64, ndim=1] startpix = np.empty(num, dtype=np.int64) cdef np.ndarray[int64, ndim=1] ringpix = np.empty(num, dtype=np.int64) cdef np.ndarray[double, ndim=1] costheta = np.empty(num, dtype=np.float) cdef np.ndarray[double, ndim=1] sintheta = np.empty(num, dtype=np.float) cdef np.ndarray[bool, ndim=1, cast=True] shifted = np.empty(num, dtype=np.bool) for i in range(num): hb.get_ring_info(ring[i], startpix[i], ringpix[i], costheta[i], sintheta[i], shifted[i]) return startpix, ringpix, costheta, sintheta, shifted def pix2ring(nside, np.ndarray[int64, ndim=1] pix not None, nest=False): """Convert pixel identifier to ring number Rings are specified by a positive integer, 1 <= ring <= 4*nside-1. Parameters ---------- nside : int The healpix nside parameter, must be a power of 2, less than 2**30 pix : int64, scalar or array-like The pixel identifier(s) nest : bool Is *pix* specified in the NEST ordering scheme? Returns ------- ring : int, length equal to that of *pix* Ring number Example ------- >>> import healpy as hp >>> import numpy as np >>> nside = 2 >>> hp.pix2ring(nside, np.arange(hp.nside2npix(nside))) array([1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 3, 3, 3, 3, 3, 3, 3, 3, 4, 4, 4, 4, 4, 4, 4, 4, 5, 5, 5, 5, 5, 5, 5, 5, 6, 6, 6, 6, 6, 6, 6, 6, 7, 7, 7, 7]) """ if not isnsideok(nside): raise ValueError('Wrong nside value, must be a power of 2, less than 2**30') cdef Healpix_Ordering_Scheme scheme if nest: scheme = NEST else: scheme = RING cdef T_Healpix_Base[int64] hb = T_Healpix_Base[int64](nside, scheme, SET_NSIDE) num = pix.shape[0] cdef np.ndarray[int64, ndim=1] ring = np.empty(num, dtype=np.int64) for i in range(num): ring[i] = hb.pix2ring(pix[i]) return ring cdef bool isnsideok(int nside): if nside < 0 or nside != 2**int(round(np.log2(nside))): return False else: return True healpy-1.8.1/healpy/src/_healpy_utils.h0000650000175000017530000000053611705033043020472 0ustar zoncaplanck00000000000000#ifndef HEALPY_UTILS_H #define HEALPY_UTILS_H #define healpyAssertType(testval,msg) \ do { if (testval); else { PyErr_SetString(PyExc_TypeError, msg); return NULL; } } while(0) #define healpyAssertValue(testval,msg) \ do { if (testval); else { PyErr_SetString(PyExc_ValueError, msg); return NULL; } } while(0) #define CP_(str)(char *)(str) #endif healpy-1.8.1/healpy/src/_healpy_fitsio_lib.cc0000644000175000017500000000613612351601276021466 0ustar zoncazonca00000000000000/* * This file is part of Healpy. * * Healpy is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpy is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpy; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about Healpy, see http://code.google.com/p/healpy */ /* This module provides Healpix functions to Python. It uses the healpix_cxx library. */ #include #include #include #include "numpy/arrayobject.h" #include "healpix_data_io.h" #include "arr.h" #include "_healpy_utils.h" /*********************************************************************** healpy_pixwin input: nside, data_path, pol=False output: W(l), the pixel window function */ static PyObject *healpy_pixwin(PyObject *self, PyObject *args, PyObject *kwds) { int nside; char * datapath=NULL; int polarisation = 0; /* not polarised by default */ static const char* kwlist[] = {"","", "pol", NULL}; if (!PyArg_ParseTupleAndKeywords(args, kwds, "is|i", (char **)kwlist, &nside, &datapath, &polarisation)) return NULL; healpyAssertValue((nside&(nside-1))==0, "Wrong nside value (must be a power of 2, less than 2**30)"); arr pw_temp, pw_pol; read_pixwin(datapath, nside, pw_temp, pw_pol); npy_intp szpw; szpw = pw_temp.size(); PyArrayObject *pixwin_temp = (PyArrayObject*)PyArray_SimpleNew(1, (npy_intp*)&szpw, PyArray_DOUBLE); if( !pixwin_temp ) return NULL; PyArrayObject *pixwin_pol = (PyArrayObject*)PyArray_SimpleNew(1, (npy_intp*)&szpw, PyArray_DOUBLE); if( !pixwin_pol ) return NULL; for(int i=0; i= 3 static PyModuleDef moduledef = { PyModuleDef_HEAD_INIT, "_healpy_sph_transform_lib", NULL, -1, methods }; #endif PyMODINIT_FUNC #if PY_MAJOR_VERSION < 3 init_healpy_fitsio_lib(void) #else PyInit__healpy_fitsio_lib(void) #endif { import_array(); #if PY_MAJOR_VERSION < 3 Py_InitModule("_healpy_fitsio_lib", methods); #else return PyModule_Create(&moduledef); #endif } healpy-1.8.1/healpy/src/_common.pxd0000644000175000017500000001153412351422052017466 0ustar zoncazonca00000000000000import numpy as np cimport numpy as np from libcpp cimport bool from libcpp.vector cimport vector ctypedef unsigned size_t ctypedef size_t tsize cdef extern from "stddef.h": ctypedef long ptrdiff_t ctypedef ptrdiff_t tdiff cdef extern from "datatypes.h": ctypedef int int64 cdef extern from "xcomplex.h": cdef cppclass xcomplex[T]: T re, im cdef extern from "arr.h": cdef cppclass arr[T]: arr() arr(T *ptr, tsize sz) void allocAndFill (tsize sz, T &inival) tsize size() T &operator[] (tsize n) cdef cppclass fix_arr[T, int]: pass cdef extern from "rangeset.h": cdef cppclass rangeset[T]: tsize size() int64 nval() T ivbegin(tdiff i) T ivend(tdiff i) cdef extern from "vec3.h": cdef cppclass vec3: double x, y, z vec3() vec3(double xc, double yc, double zc) cdef extern from "pointing.h": cdef cppclass pointing: pointing() pointing(vec3 inp) void normalize() double theta double phi cdef extern from "healpix_base.h": ctypedef int val_4 "4" ctypedef int val_8 "8" cdef enum Healpix_Ordering_Scheme: RING, NEST cdef cppclass nside_dummy: pass cdef nside_dummy SET_NSIDE cdef cppclass T_Healpix_Base[I]: int nside2order(I nside) I npix2nside(I npix) T_Healpix_Base() T_Healpix_Base(int order, Healpix_Ordering_Scheme scheme) T_Healpix_Base(I nside, Healpix_Ordering_Scheme scheme, nside_dummy) void Set(int order, Healpix_Ordering_Scheme scheme) void SetNside(I nside, Healpix_Ordering_Scheme scheme) double ring2z(I ring) I pix2ring(I pix) I xyf2pix(int ix, int iy, int face_num) void pix2xyf(I pix, int &ix, int &iy, int &face_num) I nest2ring(I pix) I ring2nest(I pix) I nest2peano(I pix) I peano2nest(I pix) I zphi2pix(double z, double phi) I ang2pix(pointing &ang) I vec2pix(vec3 &vec) void pix2zphi(I pix, double &z, double &phi) pointing pix2ang(I pix) vec3 pix2vec(I pix) void get_ring_info(I ring, I &startpix, I &ringpix, double &costheta, double &sintheta, bool &shifted) void get_ring_info2(I ring, I &startpix, I &ringpix, double &theta, bool &shifted) void get_ring_info_small(I ring, I &startpix, I &ringpix, bool &shifted) void neighbors(I pix, fix_arr[I,val_8] &result) void get_interpol(pointing &ptg, fix_arr[I,val_4] &pix, fix_arr[double,val_4] &wgt) int Order() I Nside() I Npix() Healpix_Ordering_Scheme Scheme() bool conformable(T_Healpix_Base &other) void swap(T_Healpix_Base &other) double max_pixrad() double max_pixrad(I ring) void boundaries(I pix, size_t step, vector[vec3] &out) arr[int] swap_cycles() void query_disc(pointing ptg, double radius, rangeset[I]& pixset) void query_disc_inclusive(pointing ptg, double radius, rangeset[I]& pixset, int fact) void query_polygon(vector[pointing] vert, rangeset[I]& pixset) void query_polygon_inclusive(vector[pointing] vert, rangeset[I]& pixset, int fact) void query_strip(double theta1, double theta2, bool inclusive, rangeset[I]& pixset) cdef extern from "healpix_map.h": cdef cppclass Healpix_Map[T]: Healpix_Map() void Set(arr[T] &data, Healpix_Ordering_Scheme scheme) T average() void Add(T x) cdef extern from "alm.h": cdef cppclass Alm[T]: Alm() Alm(int lmax_, int mmax_) void Set (int lmax_, int mmax_) void Set (arr[T] &data, int lmax_, int mmax_) tsize Num_Alms (int l, int m) cdef inline Healpix_Map[double]* ndarray2map(np.ndarray[np.float64_t, ndim=1, mode='c'] array, Healpix_Ordering_Scheme scheme) except *: """ View a contiguous ndarray as a Healpix Map. """ # To ensure that the output map is a view of the input array, the latter # is forced to be contiguous, of correct type and dimensions (otherwise, an # exception is raised). cdef arr[double] *a = new arr[double](&array[0], array.size) cdef Healpix_Map[double] *map = new Healpix_Map[double]() map.Set(a[0], scheme) del a # a does not own its buffer, so it won't be deallocated return map cdef inline Alm[xcomplex[double]]* ndarray2alm(np.ndarray[np.complex128_t, ndim=1, mode='c'] array, int lmax, int mmax) except *: """ View a contiguous ndarray as an Alm. """ cdef arr[xcomplex[double]] *a = new arr[xcomplex[double]](&array[0], array.size) cdef Alm[xcomplex[double]] *alm = new Alm[xcomplex[double]]() alm.Set(a[0], lmax, mmax) del a return alm healpy-1.8.1/healpy/projector.py0000644000175000017500000010215012346125412017113 0ustar zoncazonca00000000000000# # This file is part of Healpy. # # Healpy is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # Healpy is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with Healpy; if not, write to the Free Software # Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA # # For more information about Healpy, see http://code.google.com/p/healpy # """This module provides classes for some spherical projection. To be used when calling SphereProjAxes class. SphericalProj : a virtual class (do nothing). Just a template for derived (useful) classes GnomonicProj : Gnomonic projection """ from . import rotator as R import numpy as np from . import pixelfunc from .pixelfunc import UNSEEN pi = np.pi dtor = np.pi/180. class SphericalProj(object): """ This class defines functions for spherical projection. This class contains class method for spherical projection computation. It should not be instantiated. It should be inherited from and methods should be overloaded for desired projection. """ name = "None" def __init__(self, rot=None, coord=None, flipconv=None, **kwds): self.rotator = R.Rotator(rot=rot, coord=None, eulertype='ZYX') self.coordsys = R.Rotator(coord=coord).coordout self.coordsysstr = R.Rotator(coord=coord).coordoutstr self.set_flip(flipconv) self.set_proj_plane_info(**kwds) def set_proj_plane_info(self, **kwds): allNone = True for v in kwds.values(): if v is not None: allNone = False if not allNone: self._arrayinfo = dict(kwds) else: self._arrayinfo = None def get_proj_plane_info(self): return self._arrayinfo arrayinfo = property(get_proj_plane_info, doc="Dictionary with information on the projection array") def __eq__(self, a): if type(a) is not type(self): return False return ( (self.rotator == a.rotator) and (self.coordsys == a.coordsys ) ) def ang2xy(self, theta, phi=None, lonlat=False, direct=False): """From angular direction to position in the projection plane (%s). Input: - theta: if phi is None, theta[0] contains theta, theta[1] contains phi - phi : if phi is not None, theta,phi are direction - lonlat: if True, angle are assumed in degree, and longitude, latitude - flipconv is either 'astro' or 'geo'. None will be default. Return: - x, y: position in %s plane. """ pass def vec2xy(self, vx, vy=None, vz=None, direct=False): """From unit vector direction to position in the projection plane (%s). Input: - vx: if vy and vz are None, vx[0],vx[1],vx[2] defines the unit vector. - vy,vz: if defined, vx,vy,vz define the unit vector - lonlat: if True, angle are assumed in degree, and longitude, latitude - flipconv is either 'astro' or 'geo'. None will be default. Return: - x, y: position in %s plane. """ pass def xy2ang(self, x, y=None, lonlat=False, direct=False): """From position in the projection plane to angular direction (%s). Input: - x : if y is None, x[0], x[1] define the position in %s plane. - y : if defined, x,y define the position in projection plane. - lonlat: if True, angle are assumed in degree, and longitude, latitude - flipconv is either 'astro' or 'geo'. None will be default. Return: - theta, phi : angular direction. """ pass def xy2vec(self, x, y=None, direct=False): """From position in the projection plane to unit vector direction (%s). Input: - x : if y is None, x[0], x[1] define the position in %s plane. - y : if defined, x,y define the position in projection plane. - lonlat: if True, angle are assumed in degree, and longitude, latitude - flipconv is either 'astro' or 'geo'. None will be default. Return: - theta, phi : angular direction. """ pass def xy2ij(self, x, y=None): """From position in the projection plane to image array index (%s). Input: - x : if y is None, x[0], x[1] define the position in %s plane. - y : if defined, x,y define the position in projection plane. - projinfo : additional projection information. Return: - i,j : image array indices. """ pass def ij2xy(self, i=None, j=None): """From image array indices to position in projection plane (%s). Input: - if i and j are None, generate arrays of i and j as input - i : if j is None, i[0], j[1] define array indices in %s image. - j : if defined, i,j define array indices in image. - projinfo : additional projection information. Return: - x,y : position in projection plane. """ pass def projmap(self, map, vec2pix_func,rot=None,coord=None): """Create an array containing the projection of the map. Input: - vec2pix_func: a function taking theta,phi and returning pixel number - map: an array containing the spherical map to project, the pixelisation is described by vec2pix_func Return: - a 2D array with the projection of the map. Note: the Projector must contain information on the array. """ x,y = self.ij2xy() if np.__version__ >= '1.1': matype = np.ma.core.MaskedArray else: matype = np.ma.array if type(x) is matype and x.mask is not np.ma.nomask: w = (x.mask == False) else: w = slice(None) img=np.zeros(x.shape,np.float64)-np.inf vec = self.xy2vec(np.asarray(x[w]),np.asarray(y[w])) vec = (R.Rotator(rot=rot,coord=self.mkcoord(coord))).I(vec) pix=vec2pix_func(vec[0],vec[1],vec[2]) # support masked array for map, or a dictionnary (for explicit pixelisation) if isinstance(map, matype) and map.mask is not np.ma.nomask: mpix = map[pix] mpix[map.mask[pix]] = UNSEEN elif isinstance(map, dict): is_pix_seen = np.in1d(pix, map.keys()).reshape(pix.shape) is_pix_unseen = ~is_pix_seen mpix = np.zeros_like(img[w]) mpix[is_pix_unseen] = UNSEEN pix_seen = pix[is_pix_seen] iterable = (map[p] for p in pix_seen) mpix[is_pix_seen] = np.fromiter(iterable, mpix.dtype, count = pix_seen.size) else: mpix = map[pix] img[w] = mpix return img def set_flip(self, flipconv): """flipconv is either 'astro' or 'geo'. None will be default. With 'astro', east is toward left and west toward right. It is the opposite for 'geo' """ if flipconv is None: flipconv = 'astro' # default if flipconv == 'astro': self._flip = -1 elif flipconv == 'geo': self._flip = 1 else: raise ValueError("flipconv must be 'astro', 'geo' or None for default.") def get_extent(self): """Get the extension of the projection plane. Return: extent = (left,right,bottom,top) """ pass def get_fov(self): """Get the field of view in degree of the plane of projection Return: fov: the diameter in radian of the field of view """ return 2.*pi def get_center(self,lonlat=False): """Get the center of the projection. Input: - lonlat : if True, will return longitude and latitude in degree, otherwise, theta and phi in radian Return: - theta,phi or lonlat depending on lonlat keyword """ lon, lat = np.asarray(self.rotator.rots[0][0:2])*180/pi if lonlat: return lon,lat else: return pi/2.-lat*dtor, lon*dtor def mkcoord(self,coord): if self.coordsys is None: return (coord,coord) elif coord is None: return (self.coordsys,self.coordsys) elif type(coord) is str: return (coord,self.coordsys) else: return (tuple(coord)[0],self.coordsys) class GnomonicProj(SphericalProj): """This class provides class methods for Gnomonic projection. """ name = "Gnomonic" def __init__(self, rot=None, coord=None, xsize=None, ysize=None, reso=None, **kwds): super(GnomonicProj,self).__init__(rot=rot, coord=coord, xsize=xsize, ysize=ysize,reso=reso, **kwds) def set_proj_plane_info(self, xsize=200,ysize=None,reso=1.5): if xsize is None: xsize=200 if ysize is None: ysize=xsize if reso is None: reso=1.5 super(GnomonicProj,self).set_proj_plane_info(xsize=xsize, ysize=ysize,reso=reso) def vec2xy(self, vx, vy=None, vz=None, direct=False): if not direct: vec = self.rotator(vx,vy,vz) elif vy is None and vz is None: vec=vx elif vy is not None and vz is not None: vec=vx,vy,vz else: raise ValueError("vy and vz must be both defined or both not defined") flip = self._flip mask = (np.asarray(vec[0])<=0.) w = np.where(mask == False) if not mask.any(): mask=np.ma.nomask if not hasattr(vec[0],'__len__'): if mask is not np.ma.nomask: x = np.nan y = np.nan else: x = flip*vec[1]/vec[0] y = vec[2]/vec[0] else: x = np.zeros(vec[0].shape)+np.nan y = np.zeros(vec[0].shape)+np.nan x[w] = flip*vec[1][w]/vec[0][w] y[w] = vec[2][w]/vec[0][w] return x,y vec2xy.__doc__ = SphericalProj.ang2xy.__doc__ % (name,name) def xy2vec(self, x, y=None, direct=False): flip = self._flip if y is None: x,y = x x,y=np.asarray(x),np.asarray(y) rm1=1./np.sqrt(1.+x**2+y**2) vec = (rm1,flip*rm1*x,rm1*y) if not direct: return self.rotator.I(vec) else: return vec xy2vec.__doc__ = SphericalProj.xy2vec.__doc__ % (name,name) def ang2xy(self, theta, phi=None, lonlat=False, direct=False): vec=R.dir2vec(theta,phi,lonlat=lonlat) return self.vec2xy(vec,direct=direct) ang2xy.__doc__ = SphericalProj.ang2xy.__doc__ % (name,name) def xy2ang(self, x, y=None, lonlat=False, direct=False): return R.vec2dir(self.xy2vec(x,y,direct=direct),lonlat=lonlat) xy2ang.__doc__ = SphericalProj.xy2ang.__doc__ % (name,name) def xy2ij(self, x, y=None): if self.arrayinfo is None: raise TypeError("No projection plane array information defined for " "this projector") xsize,ysize = self.arrayinfo['xsize'],self.arrayinfo['ysize'] reso = self.arrayinfo['reso'] if y is None: x,y = x dx = reso/60. * dtor xc,yc = 0.5*(xsize-1), 0.5*(ysize-1) j = np.around(xc+x/dx).astype(np.long) i = np.around(yc+y/dx).astype(np.long) return i,j xy2ij.__doc__ = SphericalProj.xy2ij.__doc__ % (name,name) def ij2xy(self, i=None, j=None): if self.arrayinfo is None: raise TypeError("No projection plane array information defined for " "this projector") xsize,ysize = self.arrayinfo['xsize'],self.arrayinfo['ysize'] reso = self.arrayinfo['reso'] dx = reso/60. * dtor xc,yc = 0.5*(xsize-1), 0.5*(ysize-1) if i is None and j is None: idx=np.outer(np.ones(xsize),np.arange(ysize)) x=(idx-xc) * dx # astro= '-' sign, geo '+' sign idx=np.outer(np.arange(xsize),np.ones(ysize)) y=(idx-yc)*dx #(idx-yc) * dx elif i is not None and j is not None: x=(np.asarray(j)-xc) * dx y=(np.asarray(i)-yc) * dx #(asarray(i)-yc) * dx elif i is not None and j is None: i, j = i x=(np.asarray(j)-xc) * dx y=(np.asarray(i)-yc) * dx #(i-yc) * dx else: raise TypeError("Wrong parameters") return x,y ij2xy.__doc__ = SphericalProj.ij2xy.__doc__ % (name,name) def get_extent(self): xsize,ysize = self.arrayinfo['xsize'],self.arrayinfo['ysize'] left,bottom = self.ij2xy(0,0) right,top = self.ij2xy(xsize-1,ysize-1) return (left,right,bottom,top) def get_fov(self): vx,vy,vz = self.xy2vec(self.ij2xy(0,0), direct=True) a = np.arccos(vx) return 2.*a class MollweideProj(SphericalProj): """This class provides class methods for Mollweide projection. """ name = "Mollweide" __molldata = [] def __init__(self, rot=None, coord=None, xsize=800, **kwds): self.__initialise_data() super(MollweideProj,self).__init__(rot=rot, coord=coord, xsize=xsize, **kwds) def set_proj_plane_info(self,xsize): super(MollweideProj,self).set_proj_plane_info(xsize=xsize) def vec2xy(self, vx, vy=None, vz=None, direct=False): if not direct: theta,phi=R.vec2dir(self.rotator(vx,vy,vz)) else: theta,phi=R.vec2dir(vx,vy,vz) flip = self._flip X,Y = MollweideProj.__molldata # set phi in [-pi,pi] phi = (phi+pi)%(2*pi)-pi lat = pi/2. - theta A = MollweideProj.__lininterp(X,Y,lat) x = flip*2./pi * phi * np.cos(A) y = np.sin(A) return x,y vec2xy.__doc__ = SphericalProj.vec2xy.__doc__ % (name,name) def xy2vec(self, x, y=None, direct=False): flip = self._flip if y is None: x,y = x mask = (np.asarray(x)**2/4.+np.asarray(y)**2 > 1.) w=np.where(mask == False) if not mask.any(): mask = np.ma.nomask if not hasattr(x,'__len__'): if mask is not np.ma.nomask: return np.nan,np.nan,np.nan else: s = np.sqrt((1-y)*(1+y)) a = np.arcsin(y) z = 2./pi * (a + y*s) phi = flip * pi/2. * x/np.maximum(s,1.e-6) sz = np.sqrt((1-z)*(1+z)) vec = sz*np.cos(phi),sz*np.sin(phi),z if not direct: return self.rotator.I(vec) else: return vec else: vec = (np.zeros(x.shape)+np.nan, np.zeros(x.shape)+np.nan, np.zeros(x.shape)+np.nan) s = np.sqrt((1-y[w])*(1+y[w])) a = np.arcsin(y[w]) vec[2][w] = 2./pi * (a + y[w]*s) phi = flip * pi/2. * x[w]/np.maximum(s,1.e-6) sz = np.sqrt((1-vec[2][w])*(1+vec[2][w])) vec[0][w] = sz*np.cos(phi) vec[1][w] = sz*np.sin(phi) if not direct: return self.rotator.I(vec) else: return vec xy2vec.__doc__ = SphericalProj.xy2vec.__doc__ % (name,name) def ang2xy(self, theta, phi=None, lonlat=False, direct=False): return self.vec2xy(R.dir2vec(theta,phi,lonlat=lonlat),direct=direct) ang2xy.__doc__ = SphericalProj.ang2xy.__doc__ % (name,name) def xy2ang(self, x, y=None, lonlat=False, direct=False): vec = self.xy2vec(x,y,direct=direct) return R.vec2dir(vec,lonlat=lonlat) xy2ang.__doc__ = SphericalProj.xy2ang.__doc__ % (name,name) def xy2ij(self, x, y=None): if self.arrayinfo is None: raise TypeError("No projection plane array information defined for " "this projector") xsize = self.arrayinfo['xsize'] ysize=xsize/2 if y is None: x,y = x xc,yc = (xsize-1.)/2., (ysize-1.)/2. if hasattr(x,'__len__'): j = np.around(x*xc/2.+xc).astype(np.long) i = np.around(yc+y*yc).astype(np.long) mask = (x**2/4.+y**2>1.) if not mask.any(): mask=np.ma.nomask j=np.ma.array(j,mask=mask) i=np.ma.array(i,mask=mask) else: if x**2/4.+y**2 > 1.: i,j=np.nan,np.nan else: j = np.around(x*xc/2.+xc).astype(np.long) i = np.around(yc+y*yc).astype(np.long) return i,j xy2ij.__doc__ = SphericalProj.xy2ij.__doc__ % (name,name) def ij2xy(self, i=None, j=None): if self.arrayinfo is None: raise TypeError("No projection plane array information defined for " "this projector") xsize = self.arrayinfo['xsize'] ysize=xsize/2 xc,yc=(xsize-1.)/2.,(ysize-1.)/2. if i is None and j is None: idx = np.outer(np.arange(ysize),np.ones(xsize)) y = (idx-yc)/yc idx = np.outer(np.ones(ysize),np.arange(xsize)) x = 2.*(idx-xc)/xc mask = x**2/4.+y**2 > 1. if not mask.any(): mask=np.ma.nomask x = np.ma.array(x,mask=mask) y = np.ma.array(y,mask=mask) elif i is not None and j is not None: y = (np.asarray(i)-yc)/yc x=2.*(np.asarray(j)-xc)/xc if x**2/4.+y**2 > 1.: x,y=np.nan,np.nan elif i is not None and j is None: i,j = i y=(np.asarray(i)-yc)/yc x=2.*(np.asarray(j)-xc)/xc if x**2/4.+y**2 > 1.: x,y=np.nan,np.nan else: raise TypeError("i and j must be both given or both not given") return x,y ij2xy.__doc__ = SphericalProj.ij2xy.__doc__ % (name,name) def get_extent(self): return (-2.0,2.0,-1.0,1.0) @staticmethod def __initialise_data(): if len(MollweideProj.__molldata) == 0: X = (np.arange(1.,180.,1.)-90.)*dtor Y = MollweideProj.__findRoot(MollweideProj.__fmoll, MollweideProj.__dfmoll, X.copy(),X,niter=10) X = np.concatenate([[-pi/2],X,[pi/2]]) Y = np.concatenate([[-pi/2],Y,[pi/2]]) MollweideProj.__molldata.append( X ) MollweideProj.__molldata.append( Y ) return @staticmethod def __findRoot(f, df, x0, argsf=None, argsdf=None, niter=100): x = x0 niter = min(abs(niter),1000) i = 0 while i < niter: dx = -f(x,argsf)/df(x,argsdf) x += dx i += 1 return x @staticmethod def __fmoll(x,args): return 2.*x+np.sin(2.*x)-pi*np.sin(args) @staticmethod def __dfmoll(x,args): return 2.*(1.+np.cos(2.*x)) @staticmethod def __lininterp(X,Y,x): idx = X.searchsorted(x) y = Y[idx-1] + (Y[idx]-Y[idx-1])/(X[idx]-X[idx-1]) * (x-X[idx-1]) return y class CartesianProj(SphericalProj): """This class provides class methods for Cartesian projection. """ name = "Cartesian" def __init__(self, rot=None, coord=None, xsize=800, ysize=None, lonra=None, latra=None, **kwds): super(CartesianProj,self).__init__(rot=rot, coord=coord, xsize=xsize, ysize=ysize, lonra=lonra, latra=latra, **kwds) def set_proj_plane_info(self,xsize,ysize,lonra,latra): if lonra is None: lonra = [-180.,180.] if latra is None: latra = [-90.,90.] if (len(lonra)!=2 or len(latra)!=2 or lonra[0]<-180. or lonra[1]>180. or latra[0]<-90 or latra[1]>90 or lonra[0]>=lonra[1] or latra[0]>=latra[1]): raise TypeError("Wrong argument lonra or latra. Must be lonra=[a,b],latra=[c,d] " "with a=-180, b<=180, c>=-90, d<=+90") lonra = self._flip*np.float64(lonra)[::self._flip] latra = np.float64(latra) xsize = np.long(xsize) if ysize is None: ratio = (latra[1]-latra[0])/(lonra[1]-lonra[0]) ysize = np.long(round(ratio*xsize)) else: ysize = np.long(ysize) ratio = float(ysize)/float(xsize) if max(xsize,ysize) > 2000: if max(xsize,ysize) == xsize: xsize = 2000 ysize = np.long(round(ratio*xsize)) else: ysize = 2000 xsize = np.long(round(ysize/ratio)) super(CartesianProj,self).set_proj_plane_info(xsize=xsize, lonra=lonra, latra=latra, ysize=ysize, ratio=ratio) def vec2xy(self, vx, vy=None, vz=None, direct=False): if not direct: theta,phi=R.vec2dir(self.rotator(vx,vy,vz)) else: theta,phi=R.vec2dir(vx,vy,vz) flip = self._flip # set phi in [-pi,pi] x = flip*((phi+pi)%(2*pi)-pi) x /= dtor # convert in degree y = pi/2. - theta y /= dtor # convert in degree return x,y vec2xy.__doc__ = SphericalProj.vec2xy.__doc__ % (name,name) def xy2vec(self, x, y=None, direct=False): if y is None: x,y = np.asarray(x) else: x,y = np.asarray(x),np.asarray(y) flip = self._flip theta = pi/2.-y*dtor # convert in radian phi = flip*x*dtor # convert in radian # dir2vec does not support 2d arrays, so first use flatten and then # reshape back to previous shape if not direct: vec = self.rotator.I(R.dir2vec(theta.flatten(),phi.flatten())) else: vec = R.dir2vec(theta.flatten(),phi.flatten()) vec = [v.reshape(theta.shape) for v in vec] return vec xy2vec.__doc__ = SphericalProj.xy2vec.__doc__ % (name,name) def ang2xy(self, theta, phi=None, lonlat=False, direct=False): return self.vec2xy(R.dir2vec(theta,phi,lonlat=lonlat),direct=direct) ang2xy.__doc__ = SphericalProj.ang2xy.__doc__ % (name,name) def xy2ang(self, x, y=None, lonlat=False, direct=False): vec = self.xy2vec(x,y,direct=direct) return R.vec2dir(vec,lonlat=lonlat) xy2ang.__doc__ = SphericalProj.xy2ang.__doc__ % (name,name) def xy2ij(self, x, y=None): if self.arrayinfo is None: raise TypeError("No projection plane array information defined for " "this projector") xsize = self.arrayinfo['xsize'] ysize = self.arrayinfo['ysize'] lonra = self.arrayinfo['lonra'] latra = self.arrayinfo['latra'] if y is None: x,y = np.asarray(x) else: x,y = np.asarray(x), np.asarray(y) j = np.around((x-lonra[0])/(lonra[1]-lonra[0])*(xsize-1)).astype(np.int64) i = np.around((y-latra[0])/(latra[1]-latra[0])*(ysize-1)).astype(np.int64) if len(x.shape) > 0: mask = ((i<0)|(i>=ysize)|(j<0)|(j>=xsize)) if not mask.any(): mask=np.ma.nomask j=np.ma.array(j,mask=mask) i=np.ma.array(i,mask=mask) else: if j<0 or j>=xsize or i<0 or i>=ysize: i=j=None return i,j xy2ij.__doc__ = SphericalProj.xy2ij.__doc__ % (name,name) def ij2xy(self, i=None, j=None): if self.arrayinfo is None: raise TypeError("No projection plane array information defined for " "this projector") xsize = self.arrayinfo['xsize'] ysize = self.arrayinfo['ysize'] lonra = self.arrayinfo['lonra'] latra = self.arrayinfo['latra'] if i is not None and j is None: i,j = np.asarray(i) elif i is not None and j is not None: i,j = np.asarray(i),np.asarray(j) if i is None and j is None: idx = np.outer(np.arange(ysize),np.ones(xsize)) y = (float(latra[1]-latra[0])/(ysize-1.)) * idx y += latra[0] idx = np.outer(np.ones(ysize),np.arange(xsize)) x = (float(lonra[1]-lonra[0])/(xsize-1.) * idx) x += lonra[0] x = np.ma.array(x) y = np.ma.array(y) elif i is not None and j is not None: y = (float(latra[1]-latra[0])/(ysize-1) ) * i y += latra[0] x = (float(lonra[1]-lonra[0])/(xsize-1)) * j x += lonra[0] if len(i.shape) > 0: mask = ((x<-180)|(x>180)|(y<-90)|(y>90)) if not mask.any(): mask = np.ma.nomask x = np.ma.array(x,mask=mask) y = np.ma.array(y,mask=mask) else: if x<-180 or x>180 or y<-90 or y>90: x = y = np.nan else: raise TypeError("i and j must be both given or both not given") return x,y ij2xy.__doc__ = SphericalProj.ij2xy.__doc__ % (name,name) def get_extent(self): lonra = self.arrayinfo['lonra'] latra = self.arrayinfo['latra'] return (lonra[0],lonra[1],latra[0],latra[1]) get_extent.__doc__ = SphericalProj.get_extent.__doc__ def get_fov(self): xsize = self.arrayinfo['xsize'] ysize = self.arrayinfo['ysize'] v1 = np.asarray(self.xy2vec(self.ij2xy(0,0), direct=True)) v2 = np.asarray(self.xy2vec(self.ij2xy(ysize-1,xsize-1), direct=True)) a = np.arccos((v1*v2).sum()) return 2*a # def get_fov(self): # lonra = self.arrayinfo['lonra'] # latra = self.arrayinfo['latra'] # return np.sqrt((lonra[1]-lonra[0])**2+(latra[1]-latra[0])**2) def get_center(self,lonlat=False): lonra = self.arrayinfo['lonra'] latra = self.arrayinfo['latra'] xc = 0.5*(lonra[1]+lonra[0]) yc = 0.5*(latra[1]+latra[0]) return self.xy2ang(xc,yc,lonlat=lonlat) get_center.__doc__ = SphericalProj.get_center.__doc__ class OrthographicProj(SphericalProj): """This class provides methods for orthographic projection """ name = "Orthographic" def __init__(self, rot=None, coord=None, xsize=800, half_sky=False,**kwds): super(OrthographicProj,self).__init__(rot=rot, coord=coord,xsize=xsize, half_sky=half_sky,**kwds) def set_proj_plane_info(self,xsize,half_sky): super(OrthographicProj,self).set_proj_plane_info(xsize=xsize, half_sky=half_sky) def vec2xy(self, vx, vy=None, vz=None, direct=False): if not direct: theta,phi=R.vec2dir(self.rotator(vx,vy,vz)) else: theta,phi=R.vec2dir(vx,vy,vz) if self.arrayinfo is None: raise TypeError("No projection plane array information defined for" " this projector") half_sky = self.arrayinfo['half_sky'] flip = self._flip # set phi in [-pi,pi] phi = flip*(phi+pi)%(2*pi)-pi lat = pi/2. - theta x = np.cos(lat)*np.sin(phi) if not half_sky: x -= 1.0 y = np.sin(lat) # unfold back of sphere cosc = np.cos(lat)*np.cos(phi) if np.any(cosc<0): hmask = (cosc<0) if hasattr(x,'__len__'): if half_sky: x[hmask] = np.nan else: x[hmask] *= -1 elif hmask: if half_sky: x = np.nan else: x *= 1 if half_sky: mask = (np.asarray(x)**2+np.asarray(y)**2>1.0) else: mask = ((np.mod(np.asarray(x)+2.0,2.0)-1.0)**2 + \ np.asarray(y)**2>1.0) if mask.any(): if not hasattr(x,'__len__'): x = np.nan y = np.nan else: x[mask] = np.nan y[mask] = np.nan return x,y vec2xy.__doc__ = SphericalProj.vec2xy.__doc__ % (name,name) def xy2vec(self, x, y=None, direct=False): if y is None: x,y = x if hasattr(x,'__len__'): x,y = np.asarray(x),np.asarray(y) if self.arrayinfo is None: raise TypeError("No projection plane array information defined for" " this projector") half_sky = self.arrayinfo['half_sky'] flip = self._flip # re-fold back of sphere mask = None if not half_sky: if hasattr(x,'__len__'): if np.any(x>0.0): mask = (x>0.0) x[mask] *= -1 elif x>0: mask = 0 x = -x x+=1.0 r = np.sqrt(x**2+y**2) if hasattr(r,'__len__'): r[r>1] = np.nan elif r>1: r = np.nan c = np.arcsin(r) if hasattr(y,'__len__'): y[np.abs(y)>1] = np.nan elif np.abs(y)>1: y = np.nan lat = np.arcsin(y) phi = np.arctan2(x,np.cos(c)) phi *= flip if not mask is None: if hasattr(phi,'__len__'): phi[mask] = pi-phi[mask] else: phi = pi-phi theta = pi/2. - lat vec = R.dir2vec(theta,phi) if not direct: return self.rotator.I(vec) else: return vec xy2vec.__doc__ = SphericalProj.xy2vec.__doc__ % (name,name) def ang2xy(self, theta, phi=None, lonlat=False, direct=False): return self.vec2xy(R.dir2vec(theta,phi,lonlat=lonlat),direct=direct) ang2xy.__doc__ = SphericalProj.ang2xy.__doc__ % (name,name) def xy2ang(self, x, y=None, lonlat=False, direct=False): return R.vec2dir(self.xy2vec(x,y,direct=direct),lonlat=lonlat) xy2ang.__doc__ = SphericalProj.xy2ang.__doc__ % (name,name) def xy2ij(self, x, y=None): if self.arrayinfo is None: raise TypeError("No projection plane array information defined for" " this projector") xsize = self.arrayinfo['xsize'] half_sky = self.arrayinfo['half_sky'] if half_sky: ratio = 1.0 else: ratio = 2.0 ysize = xsize/ratio if y is None: x,y = np.asarray(x) else: x,y = np.asarray(x), np.asarray(y) xc,yc = (xsize-1.)/2., (ysize-1.)/2. if hasattr(x,'__len__'): if half_sky: mask = (x**2+y**2>1.0) else: mask = ((np.mod(x+2.0,2.0)-1.0)**2+y**2>1.0) if not mask.any(): mask = np.ma.nomask j=np.ma.array(np.around(x*xc/ratio+xc).astype(np.long),mask=mask) i=np.ma.array(np.around(yc+y*yc).astype(np.long),mask=mask) else: if ( half_sky and x**2+y**2>1.0 ) or \ ( not half_sky and (np.mod(x+2.0,2.0)-1.0)**2+y**2>1.0 ): i,j,=np.nan,np.nan else: j = np.around(x*xc/ratio+xc).astype(np.long) i = np.around(yc+y*yc).astype(np.long) return i,j xy2ij.__doc__ = SphericalProj.xy2ij.__doc__ % (name,name) def ij2xy(self, i=None, j=None): if self.arrayinfo is None: raise TypeError("No projection plane array information defined for" " this projector") xsize = self.arrayinfo['xsize'] half_sky = self.arrayinfo['half_sky'] if half_sky: ratio = 1.0 else: ratio = 2.0 ysize=xsize/ratio xc,yc=(xsize-1.)/2.,(ysize-1.)/2. if i is None and j is None: idx = np.outer(np.arange(ysize),np.ones(xsize)) y = (idx-yc)/yc idx = np.outer(np.ones(ysize),np.arange(xsize)) x = ratio*(idx-xc)/xc elif i is not None and j is not None: y = (np.asarray(i)-yc)/yc x = ratio*(np.asarray(j)-xc)/xc # if np.mod(x,1.0)**2+y**2 > 1.0: x,y=np.nan,np.nan elif i is not None and j is None: i,j = i y=(np.asarray(i)-yc)/yc x=ratio*(np.asarray(j)-xc)/xc # if np.mod(x,1.0)**2.+y**2 > 1.: x,y=np.nan,np.nan else: raise TypeError("i and j must be both given or both not given") if half_sky: mask = (x**2+y**2>1.) else: mask = ((np.mod(x+2.0,2.0)-1.0)**2+y**2 > 1.) if not mask.any(): mask=np.ma.nomask x = np.ma.array(x,mask=mask) y = np.ma.array(y,mask=mask) if len(x)==0: x = x[0] if len(y)==0: y = y[0] return x,y ij2xy.__doc__ = SphericalProj.ij2xy.__doc__ % (name,name) def get_extent(self): if self.arrayinfo is None: raise TypeError("No projection plane array information defined for" " this projector") half_sky = self.arrayinfo['half_sky'] if half_sky: ratio = 1.0 else: ratio = 2.0 return (-ratio,ratio,-1.0,1.0) get_extent.__doc__ = SphericalProj.get_extent.__doc__ healpy-1.8.1/healpy/version.py0000654000175000017530000000002412351601344016727 0ustar zoncaplanck00000000000000__version__='1.8.1' healpy-1.8.1/healpy/newvisufunc.py0000644000175000017500000001557512346125412017476 0ustar zoncazonca00000000000000__all__ = ['mollview', 'projplot'] import numpy as np from .pixelfunc import ang2pix, npix2nside from .rotator import Rotator from matplotlib.projections.geo import GeoAxes ###### WARNING ################# # this module is work in progress, the aim is to reimplement the healpy # plot functions using the new features of matplotlib and remove most # of the custom projection code class ThetaFormatterShiftPi(GeoAxes.ThetaFormatter): """Shifts labelling by pi Shifts labelling from -180,180 to 0-360""" def __call__(self, x, pos=None): if x != 0: x *= -1 if x < 0: x += 2*np.pi return super(ThetaFormatterShiftPi, self).__call__(x, pos) def lonlat(theta, phi): """Converts theta and phi to longitude and latitude From colatitude to latitude and from astro longitude to geo longitude""" longitude = -1*np.asarray(phi) latitude = np.pi/2 - np.asarray(theta) return longitude, latitude def mollview(m=None, rot=None, coord=None, unit='', xsize=1000, nest=False, min=None, max=None, flip='astro', format='%g', cbar=True, cmap=None, norm=None, graticule=False, graticule_labels=False, **kwargs): """Plot an healpix map (given as an array) in Mollweide projection. Parameters ---------- map : float, array-like or None An array containing the map, supports masked maps, see the `ma` function. If None, will display a blank map, useful for overplotting. rot : scalar or sequence, optional Describe the rotation to apply. In the form (lon, lat, psi) (unit: degrees) : the point at longitude *lon* and latitude *lat* will be at the center. An additional rotation of angle *psi* around this direction is applied. coord : sequence of character, optional Either one of 'G', 'E' or 'C' to describe the coordinate system of the map, or a sequence of 2 of these to rotate the map from the first to the second coordinate system. unit : str, optional A text describing the unit of the data. Default: '' xsize : int, optional The size of the image. Default: 800 nest : bool, optional If True, ordering scheme is NESTED. Default: False (RING) min : float, optional The minimum range value max : float, optional The maximum range value flip : {'astro', 'geo'}, optional Defines the convention of projection : 'astro' (default, east towards left, west towards right) or 'geo' (east towards roght, west towards left) format : str, optional The format of the scale label. Default: '%g' cbar : bool, optional Display the colorbar. Default: True norm : {'hist', 'log', None} Color normalization, hist= histogram equalized color mapping, log= logarithmic color mapping, default: None (linear color mapping) kwargs : keywords any additional keyword is passed to pcolormesh graticule : bool add graticule graticule_labels : bool longitude and latitude labels """ # not implemented features if not (norm is None): raise NotImplementedError() # Create the figure import matplotlib.pyplot as plt width = 8.5 fig = plt.figure(figsize=(width,width*.63)) ax = fig.add_subplot(111, projection="mollweide") # FIXME: make a more general axes creation that works also with subplots #ax = plt.gcf().add_axes((.125, .1, .9, .9), projection="mollweide") # remove white space around the image plt.subplots_adjust(left=0.02, right=0.98, top=0.95, bottom=0.05) if graticule and graticule_labels: plt.subplots_adjust(left=0.04, right=0.98, top=0.95, bottom=0.05) if not m is None: # auto min and max if min is None: min = m.min() if max is None: max = m.max() # allow callers to override the hold state by passing hold=True|False washold = ax.ishold() hold = kwargs.pop('hold', None) if hold is not None: ax.hold(hold) try: ysize = xsize/2 theta = np.linspace(np.pi, 0, ysize) phi = np.linspace(-np.pi, np.pi, xsize) longitude = np.radians(np.linspace(-180, 180, xsize)) if flip == "astro": longitude = longitude[::-1] latitude = np.radians(np.linspace(-90, 90, ysize)) # project the map to a rectangular matrix xsize x ysize PHI, THETA = np.meshgrid(phi, theta) # coord or rotation if coord or rot: r = Rotator(coord=coord, rot=rot, inv=True) THETA, PHI = r(THETA.flatten(), PHI.flatten()) THETA = THETA.reshape(ysize, xsize) PHI = PHI.reshape(ysize, xsize) nside = npix2nside(len(m)) if not m is None: grid_pix = ang2pix(nside, THETA, PHI, nest=nest) grid_map = m[grid_pix] # plot ret = plt.pcolormesh(longitude, latitude, grid_map, vmin=min, vmax=max, rasterized=True, **kwargs) # graticule plt.grid(graticule) if graticule: longitude_grid_spacing = 60 # deg ax.set_longitude_grid(longitude_grid_spacing) if width < 10: ax.set_latitude_grid(45) ax.set_longitude_grid_ends(90) if graticule_labels: ax.xaxis.set_major_formatter(ThetaFormatterShiftPi(longitude_grid_spacing)) else: # remove longitude and latitude labels ax.xaxis.set_ticklabels([]) ax.yaxis.set_ticklabels([]) # colorbar if cbar and not m is None: cb = fig.colorbar(ret, orientation='horizontal', shrink=.4, pad=0.05, ticks=[min, max]) cb.ax.xaxis.set_label_text(unit) cb.ax.xaxis.labelpad = -8 # workaround for issue with viewers, see colorbar docstring cb.solids.set_edgecolor("face") plt.draw() finally: ax.hold(washold) return ret def projplot(theta, phi, fmt=None, **kwargs): """projplot is a wrapper around :func:`matplotlib.Axes.plot` to take into account the spherical projection. You can call this function as:: projplot(theta, phi) # plot a line going through points at coord (theta, phi) projplot(theta, phi, 'bo') # plot 'o' in blue at coord (theta, phi) Parameters ---------- theta, phi : float, array-like Coordinates of point to plot in radians. fmt : str A format string (see :func:`matplotlib.Axes.plot` for details) Notes ----- Other keywords are passed to :func:`matplotlib.Axes.plot`. See Also -------- projscatter, projtext """ import matplotlib.pyplot as plt longitude, latitude = lonlat(theta, phi) if fmt is None: ret = plt.plot(longitude, latitude, **kwargs) else: ret = plt.plot(longitude, latitude, fmt, **kwargs) return ret healpy-1.8.1/healpy/__init__.py0000644000175000017500000000710312346125412016645 0ustar zoncazonca00000000000000# # This file is part of Healpy. # # Healpy is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # Healpy is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with Healpy; if not, write to the Free Software # Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA # # For more information about Healpy, see http://code.google.com/p/healpy # """HealPy is a package to manipulate Healpix maps (ang2pix, pix2ang) and compute spherical harmonics tranforms on them. """ import warnings try: ImportWarning except NameError: class ImportWarning(Warning): pass from .version import __version__ from .pixelfunc import (ma, mask_good, mask_bad, ang2pix, pix2ang, pix2vec, vec2pix, vec2ang, ang2vec, nside2npix, npix2nside, isnsideok, isnpixok, ring2nest, nest2ring, reorder, get_neighbours, get_all_neighbours, max_pixrad, get_interp_val, fit_dipole, fit_monopole, remove_dipole, remove_monopole, get_nside, maptype, ud_grade, nside2resol, nside2pixarea, get_map_size) from .sphtfunc import (anafast, map2alm, alm2map, Alm, synalm, synfast, smoothing, smoothalm, almxfl, alm2cl, pixwin, alm2map_der1, gauss_beam) try: from ._query_disc import query_disc, query_strip, query_polygon, boundaries except ImportError: warnings.warn('Warning: cannot import query disc module') try: from ._pixelfunc import ringinfo, pix2ring except ImportError: warnings.warn('Warning: cannot import pixelfunc module') try: from ._sphtools import rotate_alm from ._sphtools import alm2map_spin_healpy as alm2map_spin from ._sphtools import map2alm_spin_healpy as map2alm_spin except ImportError: warnings.warn('Warning: cannot import _sphtools module') from .rotator import Rotator, vec2dir, dir2vec try: from ._healpy_pixel_lib import UNSEEN except ImportError: warnings.warn('Warning: cannot import pixel lib module') try: from pshyt import job from pshyt import * except ImportError: warnings.warn("Warning: Cannot import pshyt module)", category=ImportWarning) try: from .visufunc import (mollview,graticule,delgraticules,gnomview, projplot,projscatter, projtext, cartview, orthview) from .zoomtool import mollzoom,set_g_clim if visufunc.matplotlib.__version__ == '0.98,3': warnings.warn("Bug in matplotlib 0.98.3 prevents mollview from working\n"+ "You should upgrade to matplotlib 0.98.4 or above", category=ImportWarning) except ImportError: warnings.warn("Warning: Cannot import visualisation tools (needs matplotlib)", category=ImportWarning) try: from .fitsfunc import write_map,read_map,mrdfits,mwrfits,read_alm,write_alm,write_cl,read_cl except: warnings.warn("Warning: Cannot import fits i/o tools (needs pyfits)", category=ImportWarning) healpy-1.8.1/healpy/visufunc.py0000644000175000017500000010267012346125412016755 0ustar zoncazonca00000000000000# # This file is part of Healpy. # # Healpy is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # Healpy is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with Healpy; if not, write to the Free Software # Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA # # For more information about Healpy, see http://code.google.com/p/healpy # """ ===================================================== visufunc.py : Healpix visualization functions ===================================================== This module provides functions to display Healpix map. Map projections --------------- - :func:`mollview` displays a map using Mollweide projection (full sky) - :func:`gnomview` displays a map using Gnomonic projection (local map) - :func:`cartview` displays a map using Cartesian projection - :func:`orthview` displays a map using Orthographic projection (full or half sky) Graticules ---------- - :func:`graticule` adds a graticule to the current map - :func:`delgraticules` deletes all graticules of a map Tracing lines or points ----------------------- - :func:`projplot` plots data points on the current map - :func:`projscatter` displays scatter points - :func:`projtext` display a text on the current map """ __all__ = ['mollview', 'gnomview', 'cartview', 'orthview', 'graticule', 'delgraticules', 'projplot', 'projscatter', 'projtext'] from . import projaxes as PA import numpy as np import matplotlib from . import pixelfunc pi = np.pi dtor = pi/180. def mollview(map=None,fig=None,rot=None,coord=None,unit='', xsize=800,title='Mollweide view',nest=False, min=None,max=None,flip='astro', remove_dip=False,remove_mono=False, gal_cut=0, format='%g',format2='%g', cbar=True,cmap=None, notext=False, norm=None,hold=False,margins=None,sub=None, return_projected_map=False): """Plot an healpix map (given as an array) in Mollweide projection. Parameters ---------- map : float, array-like or None An array containing the map, supports masked maps, see the `ma` function. If None, will display a blank map, useful for overplotting. fig : int or None, optional The figure number to use. Default: create a new figure rot : scalar or sequence, optional Describe the rotation to apply. In the form (lon, lat, psi) (unit: degrees) : the point at longitude *lon* and latitude *lat* will be at the center. An additional rotation of angle *psi* around this direction is applied. coord : sequence of character, optional Either one of 'G', 'E' or 'C' to describe the coordinate system of the map, or a sequence of 2 of these to rotate the map from the first to the second coordinate system. unit : str, optional A text describing the unit of the data. Default: '' xsize : int, optional The size of the image. Default: 800 title : str, optional The title of the plot. Default: 'Mollweide view' nest : bool, optional If True, ordering scheme is NESTED. Default: False (RING) min : float, optional The minimum range value max : float, optional The maximum range value flip : {'astro', 'geo'}, optional Defines the convention of projection : 'astro' (default, east towards left, west towards right) or 'geo' (east towards roght, west towards left) remove_dip : bool, optional If :const:`True`, remove the dipole+monopole remove_mono : bool, optional If :const:`True`, remove the monopole gal_cut : float, scalar, optional Symmetric galactic cut for the dipole/monopole fit. Removes points in latitude range [-gal_cut, +gal_cut] format : str, optional The format of the scale label. Default: '%g' format2 : str, optional Format of the pixel value under mouse. Default: '%g' cbar : bool, optional Display the colorbar. Default: True notext : bool, optional If True, no text is printed around the map norm : {'hist', 'log', None} Color normalization, hist= histogram equalized color mapping, log= logarithmic color mapping, default: None (linear color mapping) hold : bool, optional If True, replace the current Axes by a MollweideAxes. use this if you want to have multiple maps on the same figure. Default: False sub : int, scalar or sequence, optional Use only a zone of the current figure (same syntax as subplot). Default: None margins : None or sequence, optional Either None, or a sequence (left,bottom,right,top) giving the margins on left,bottom,right and top of the axes. Values are relative to figure (0-1). Default: None return_projected_map : bool if True returns the projected map in a 2d numpy array See Also -------- gnomview, cartview, orthview """ # Create the figure import pylab if not (hold or sub): f=pylab.figure(fig,figsize=(8.5,5.4)) extent = (0.02,0.05,0.96,0.9) elif hold: f=pylab.gcf() left,bottom,right,top = np.array(f.gca().get_position()).ravel() extent = (left,bottom,right-left,top-bottom) f.delaxes(f.gca()) else: # using subplot syntax f=pylab.gcf() if hasattr(sub,'__len__'): nrows, ncols, idx = sub else: nrows, ncols, idx = sub/100, (sub%100)/10, (sub%10) if idx < 1 or idx > ncols*nrows: raise ValueError('Wrong values for sub: %d, %d, %d'%(nrows, ncols, idx)) c,r = (idx-1)%ncols,(idx-1)/ncols if not margins: margins = (0.01,0.0,0.0,0.02) extent = (c*1./ncols+margins[0], 1.-(r+1)*1./nrows+margins[1], 1./ncols-margins[2]-margins[0], 1./nrows-margins[3]-margins[1]) extent = (extent[0]+margins[0], extent[1]+margins[1], extent[2]-margins[2]-margins[0], extent[3]-margins[3]-margins[1]) #extent = (c*1./ncols, 1.-(r+1)*1./nrows,1./ncols,1./nrows) #f=pylab.figure(fig,figsize=(8.5,5.4)) # Starting to draw : turn interactive off wasinteractive = pylab.isinteractive() pylab.ioff() try: if map is None: map = np.zeros(12)+np.inf cbar=False map = pixelfunc.ma_to_array(map) ax=PA.HpxMollweideAxes(f,extent,coord=coord,rot=rot, format=format2,flipconv=flip) f.add_axes(ax) if remove_dip: map=pixelfunc.remove_dipole(map,gal_cut=gal_cut, nest=nest,copy=True, verbose=True) elif remove_mono: map=pixelfunc.remove_monopole(map,gal_cut=gal_cut,nest=nest, copy=True,verbose=True) img = ax.projmap(map,nest=nest,xsize=xsize,coord=coord,vmin=min,vmax=max, cmap=cmap,norm=norm) if cbar: im = ax.get_images()[0] b = im.norm.inverse(np.linspace(0,1,im.cmap.N+1)) v = np.linspace(im.norm.vmin,im.norm.vmax,im.cmap.N) if matplotlib.__version__ >= '0.91.0': cb=f.colorbar(im,ax=ax, orientation='horizontal', shrink=0.5,aspect=25,ticks=PA.BoundaryLocator(), pad=0.05,fraction=0.1,boundaries=b,values=v, format=format) else: # for older matplotlib versions, no ax kwarg cb=f.colorbar(im,orientation='horizontal', shrink=0.5,aspect=25,ticks=PA.BoundaryLocator(), pad=0.05,fraction=0.1,boundaries=b,values=v, format=format) ax.set_title(title) if not notext: ax.text(0.86,0.05,ax.proj.coordsysstr,fontsize=14, fontweight='bold',transform=ax.transAxes) if cbar: cb.ax.text(0.5,-1.0,unit,fontsize=14, transform=cb.ax.transAxes,ha='center',va='center') f.sca(ax) finally: pylab.draw() if wasinteractive: pylab.ion() #pylab.show() if return_projected_map: return img def gnomview(map=None,fig=None,rot=None,coord=None,unit='', xsize=200,ysize=None,reso=1.5,degree=False, title='Gnomonic view',nest=False,remove_dip=False, remove_mono=False,gal_cut=0, min=None,max=None,flip='astro', format='%.3g',cbar=True, cmap=None, norm=None, hold=False,sub=None,margins=None,notext=False, return_projected_map=False): """Plot an healpix map (given as an array) in Gnomonic projection. Parameters ---------- map : array-like The map to project, supports masked maps, see the `ma` function. If None, use a blank map, useful for overplotting. fig : None or int, optional A figure number. Default: None= create a new figure rot : scalar or sequence, optional Describe the rotation to apply. In the form (lon, lat, psi) (unit: degrees) : the point at longitude *lon* and latitude *lat* will be at the center. An additional rotation of angle *psi* around this direction is applied. coord : sequence of character, optional Either one of 'G', 'E' or 'C' to describe the coordinate system of the map, or a sequence of 2 of these to rotate the map from the first to the second coordinate system. unit : str, optional A text describing the unit of the data. Default: '' xsize : int, optional The size of the image. Default: 200 ysize : None or int, optional The size of the image. Default: None= xsize reso : float, optional Resolution (in arcmin if degree is False). Default: 1.5 arcmin degree : bool, optional if True, reso is in degree. Default: False title : str, optional The title of the plot. Default: 'Gnomonic view' nest : bool, optional If True, ordering scheme is NESTED. Default: False (RING) min : float, scalar, optional The minimum range value max : float, scalar, optional The maximum range value flip : {'astro', 'geo'}, optional Defines the convention of projection : 'astro' (default, east towards left, west towards right) or 'geo' (east towards roght, west towards left) remove_dip : bool, optional If :const:`True`, remove the dipole+monopole remove_mono : bool, optional If :const:`True`, remove the monopole gal_cut : float, scalar, optional Symmetric galactic cut for the dipole/monopole fit. Removes points in latitude range [-gal_cut, +gal_cut] format : str, optional The format of the scale label. Default: '%g' hold : bool, optional If True, replace the current Axes by a MollweideAxes. use this if you want to have multiple maps on the same figure. Default: False sub : int or sequence, optional Use only a zone of the current figure (same syntax as subplot). Default: None margins : None or sequence, optional Either None, or a sequence (left,bottom,right,top) giving the margins on left,bottom,right and top of the axes. Values are relative to figure (0-1). Default: None notext: bool, optional If True: do not add resolution info text. Default=False return_projected_map : bool if True returns the projected map in a 2d numpy array See Also -------- mollview, cartview, orthview """ import pylab if not (hold or sub): f=pylab.figure(fig,figsize=(5.8,6.4)) if not margins: margins = (0.075,0.05,0.075,0.05) extent = (0.0,0.0,1.0,1.0) elif hold: f=pylab.gcf() left,bottom,right,top = np.array(pylab.gca().get_position()).ravel() if not margins: margins = (0.0,0.0,0.0,0.0) extent = (left,bottom,right-left,top-bottom) f.delaxes(pylab.gca()) else: # using subplot syntax f=pylab.gcf() if hasattr(sub,'__len__'): nrows, ncols, idx = sub else: nrows, ncols, idx = sub/100, (sub%100)/10, (sub%10) if idx < 1 or idx > ncols*nrows: raise ValueError('Wrong values for sub: %d, %d, %d'%(nrows, ncols, idx)) c,r = (idx-1)%ncols,(idx-1)/ncols if not margins: margins = (0.01,0.0,0.0,0.02) extent = (c*1./ncols+margins[0], 1.-(r+1)*1./nrows+margins[1], 1./ncols-margins[2]-margins[0], 1./nrows-margins[3]-margins[1]) extent = (extent[0]+margins[0], extent[1]+margins[1], extent[2]-margins[2]-margins[0], extent[3]-margins[3]-margins[1]) #f=pylab.figure(fig,figsize=(5.5,6)) # Starting to draw : turn interactive off wasinteractive = pylab.isinteractive() pylab.ioff() try: if map is None: map = np.zeros(12)+np.inf cbar=False map = pixelfunc.ma_to_array(map) ax=PA.HpxGnomonicAxes(f,extent,coord=coord,rot=rot, format=format,flipconv=flip) f.add_axes(ax) if remove_dip: map=pixelfunc.remove_dipole(map,gal_cut=gal_cut,nest=nest,copy=True) elif remove_mono: map=pixelfunc.remove_monopole(map,gal_cut=gal_cut,nest=nest,copy=True) img = ax.projmap(map,nest=nest,coord=coord,vmin=min,vmax=max, xsize=xsize,ysize=ysize,reso=reso,cmap=cmap,norm=norm) if cbar: im = ax.get_images()[0] b = im.norm.inverse(np.linspace(0,1,im.cmap.N+1)) v = np.linspace(im.norm.vmin,im.norm.vmax,im.cmap.N) if matplotlib.__version__ >= '0.91.0': cb=f.colorbar(im,ax=ax, orientation='horizontal', shrink=0.5,aspect=25,ticks=PA.BoundaryLocator(), pad=0.08,fraction=0.1,boundaries=b,values=v, format=format) else: cb=f.colorbar(im,orientation='horizontal', shrink=0.5,aspect=25,ticks=PA.BoundaryLocator(), pad=0.08,fraction=0.1,boundaries=b,values=v, format=format) ax.set_title(title) if not notext: ax.text(-0.07,0.02, "%g '/pix, %dx%d pix"%(ax.proj.arrayinfo['reso'], ax.proj.arrayinfo['xsize'], ax.proj.arrayinfo['ysize']), fontsize=12,verticalalignment='bottom', transform=ax.transAxes,rotation=90) ax.text(-0.07,0.6,ax.proj.coordsysstr,fontsize=14, fontweight='bold',rotation=90,transform=ax.transAxes) lon,lat = np.around(ax.proj.get_center(lonlat=True),ax._coordprec) ax.text(0.5,-0.03,'(%g,%g)'%(lon,lat), verticalalignment='center', horizontalalignment='center', transform=ax.transAxes) if cbar: cb.ax.text(1.05,0.30,unit,fontsize=14,fontweight='bold', transform=cb.ax.transAxes,ha='left',va='center') f.sca(ax) finally: pylab.draw() if wasinteractive: pylab.ion() #pylab.show() if return_projected_map: return img def cartview(map=None,fig=None,rot=None,zat=None,coord=None,unit='', xsize=800,ysize=None,lonra=None,latra=None, title='Cartesian view',nest=False,remove_dip=False, remove_mono=False,gal_cut=0, min=None,max=None,flip='astro', format='%.3g',cbar=True, cmap=None, norm=None,aspect=None, hold=False,sub=None,margins=None,notext=False, return_projected_map=False): """Plot an healpix map (given as an array) in Cartesian projection. Parameters ---------- map : float, array-like or None An array containing the map, supports masked maps, see the `ma` function. If None, will display a blank map, useful for overplotting. fig : int or None, optional The figure number to use. Default: create a new figure rot : scalar or sequence, optional Describe the rotation to apply. In the form (lon, lat, psi) (unit: degrees) : the point at longitude *lon* and latitude *lat* will be at the center. An additional rotation of angle *psi* around this direction is applied. coord : sequence of character, optional Either one of 'G', 'E' or 'C' to describe the coordinate system of the map, or a sequence of 2 of these to rotate the map from the first to the second coordinate system. unit : str, optional A text describing the unit of the data. Default: '' xsize : int, optional The size of the image. Default: 800 lonra : sequence, optional Range in longitude. Default: [-180,180] latra : sequence, optional Range in latitude. Default: [-90,90] title : str, optional The title of the plot. Default: 'Mollweide view' nest : bool, optional If True, ordering scheme is NESTED. Default: False (RING) min : float, optional The minimum range value max : float, optional The maximum range value flip : {'astro', 'geo'}, optional Defines the convention of projection : 'astro' (default, east towards left, west towards right) or 'geo' (east towards roght, west towards left) remove_dip : bool, optional If :const:`True`, remove the dipole+monopole remove_mono : bool, optional If :const:`True`, remove the monopole gal_cut : float, scalar, optional Symmetric galactic cut for the dipole/monopole fit. Removes points in latitude range [-gal_cut, +gal_cut] format : str, optional The format of the scale label. Default: '%g' cbar : bool, optional Display the colorbar. Default: True notext : bool, optional If True, no text is printed around the map norm : {'hist', 'log', None}, optional Color normalization, hist= histogram equalized color mapping, log= logarithmic color mapping, default: None (linear color mapping) hold : bool, optional If True, replace the current Axes by a CartesianAxes. use this if you want to have multiple maps on the same figure. Default: False sub : int, scalar or sequence, optional Use only a zone of the current figure (same syntax as subplot). Default: None margins : None or sequence, optional Either None, or a sequence (left,bottom,right,top) giving the margins on left,bottom,right and top of the axes. Values are relative to figure (0-1). Default: None return_projected_map : bool if True returns the projected map in a 2d numpy array See Also -------- mollview, gnomview, orthview """ import pylab if not (hold or sub): f=pylab.figure(fig,figsize=(8.5,5.4)) if not margins: margins = (0.075,0.05,0.075,0.05) extent = (0.0,0.0,1.0,1.0) elif hold: f=pylab.gcf() left,bottom,right,top = np.array(pylab.gca().get_position()).ravel() if not margins: margins = (0.0,0.0,0.0,0.0) extent = (left,bottom,right-left,top-bottom) f.delaxes(pylab.gca()) else: # using subplot syntax f=pylab.gcf() if hasattr(sub,'__len__'): nrows, ncols, idx = sub else: nrows, ncols, idx = sub/100, (sub%100)/10, (sub%10) if idx < 1 or idx > ncols*nrows: raise ValueError('Wrong values for sub: %d, %d, %d'%(nrows, ncols, idx)) c,r = (idx-1)%ncols,(idx-1)/ncols if not margins: margins = (0.01,0.0,0.0,0.02) extent = (c*1./ncols+margins[0], 1.-(r+1)*1./nrows+margins[1], 1./ncols-margins[2]-margins[0], 1./nrows-margins[3]-margins[1]) extent = (extent[0]+margins[0], extent[1]+margins[1], extent[2]-margins[2]-margins[0], extent[3]-margins[3]-margins[1]) #f=pylab.figure(fig,figsize=(5.5,6)) # Starting to draw : turn interactive off wasinteractive = pylab.isinteractive() pylab.ioff() try: if map is None: map = np.zeros(12)+np.inf cbar=False map = pixelfunc.ma_to_array(map) if zat and rot: raise ValueError('Only give rot or zat, not both') if zat: rot = np.array(zat,dtype=np.float64) rot.resize(3) rot[1] -= 90 ax=PA.HpxCartesianAxes(f,extent,coord=coord,rot=rot, format=format,flipconv=flip) f.add_axes(ax) if remove_dip: map=pixelfunc.remove_dipole(map,gal_cut=gal_cut,nest=nest,copy=True) elif remove_mono: map=pixelfunc.remove_monopole(map,gal_cut=gal_cut,nest=nest,copy=True) img = ax.projmap(map,nest=nest,coord=coord,vmin=min,vmax=max, xsize=xsize,ysize=ysize,lonra=lonra,latra=latra, cmap=cmap,norm=norm,aspect=aspect) if cbar: im = ax.get_images()[0] b = im.norm.inverse(np.linspace(0,1,im.cmap.N+1)) v = np.linspace(im.norm.vmin,im.norm.vmax,im.cmap.N) if matplotlib.__version__ >= '0.91.0': cb=f.colorbar(im,ax=ax, orientation='horizontal', shrink=0.5,aspect=25,ticks=PA.BoundaryLocator(), pad=0.08,fraction=0.1,boundaries=b,values=v, format=format) else: cb=f.colorbar(im,orientation='horizontal', shrink=0.5,aspect=25,ticks=PA.BoundaryLocator(), pad=0.08,fraction=0.1,boundaries=b,values=v, format=format) ax.set_title(title) if not notext: ax.text(-0.07,0.6,ax.proj.coordsysstr,fontsize=14, fontweight='bold',rotation=90,transform=ax.transAxes) if cbar: cb.ax.text(1.05,0.30,unit,fontsize=14,fontweight='bold', transform=cb.ax.transAxes,ha='left',va='center') f.sca(ax) finally: if wasinteractive: pylab.ion() pylab.draw() #pylab.show() if return_projected_map: return img def orthview(map=None,fig=None,rot=None,coord=None,unit='', xsize=800,half_sky=False, title='Orthographic view',nest=False, min=None,max=None,flip='astro', remove_dip=False,remove_mono=False, gal_cut=0, format='%g',format2='%g', cbar=True,cmap=None, notext=False, norm=None,hold=False,margins=None,sub=None, return_projected_map=False): """Plot an healpix map (given as an array) in Orthographic projection. Parameters ---------- map : float, array-like or None An array containing the map. If None, will display a blank map, useful for overplotting. fig : int or None, optional The figure number to use. Default: create a new figure rot : scalar or sequence, optional Describe the rotation to apply. In the form (lon, lat, psi) (unit: degrees) : the point at longitude *lon* and latitude *lat* will be at the center. An additional rotation of angle *psi* around this direction is applied. coord : sequence of character, optional Either one of 'G', 'E' or 'C' to describe the coordinate system of the map, or a sequence of 2 of these to rotate the map from the first to the second coordinate system. half_sky : bool, optional Plot only one side of the sphere. Default: False unit : str, optional A text describing the unit of the data. Default: '' xsize : int, optional The size of the image. Default: 800 title : str, optional The title of the plot. Default: 'Orthographic view' nest : bool, optional If True, ordering scheme is NESTED. Default: False (RING) min : float, optional The minimum range value max : float, optional The maximum range value flip : {'astro', 'geo'}, optional Defines the convention of projection : 'astro' (default, east towards left, west towards right) or 'geo' (east towards roght, west towards left) remove_dip : bool, optional If :const:`True`, remove the dipole+monopole remove_mono : bool, optional If :const:`True`, remove the monopole gal_cut : float, scalar, optional Symmetric galactic cut for the dipole/monopole fit. Removes points in latitude range [-gal_cut, +gal_cut] format : str, optional The format of the scale label. Default: '%g' format2 : str, optional Format of the pixel value under mouse. Default: '%g' cbar : bool, optional Display the colorbar. Default: True notext : bool, optional If True, no text is printed around the map norm : {'hist', 'log', None} Color normalization, hist= histogram equalized color mapping, log= logarithmic color mapping, default: None (linear color mapping) hold : bool, optional If True, replace the current Axes by an OrthographicAxes. use this if you want to have multiple maps on the same figure. Default: False sub : int, scalar or sequence, optional Use only a zone of the current figure (same syntax as subplot). Default: None margins : None or sequence, optional Either None, or a sequence (left,bottom,right,top) giving the margins on left,bottom,right and top of the axes. Values are relative to figure (0-1). Default: None return_projected_map : bool if True returns the projected map in a 2d numpy array See Also -------- mollview, gnomview, cartview """ # Create the figure import pylab if not (hold or sub): f=pylab.figure(fig,figsize=(8.5,5.4)) extent = (0.02,0.05,0.96,0.9) elif hold: f=pylab.gcf() left,bottom,right,top = np.array(f.gca().get_position()).ravel() extent = (left,bottom,right-left,top-bottom) f.delaxes(f.gca()) else: # using subplot syntax f=pylab.gcf() if hasattr(sub,'__len__'): nrows, ncols, idx = sub else: nrows, ncols, idx = sub/100, (sub%100)/10, (sub%10) if idx < 1 or idx > ncols*nrows: raise ValueError('Wrong values for sub: %d, %d, %d'%(nrows, ncols, idx)) c,r = (idx-1)%ncols,(idx-1)/ncols if not margins: margins = (0.01,0.0,0.0,0.02) extent = (c*1./ncols+margins[0], 1.-(r+1)*1./nrows+margins[1], 1./ncols-margins[2]-margins[0], 1./nrows-margins[3]-margins[1]) extent = (extent[0]+margins[0], extent[1]+margins[1], extent[2]-margins[2]-margins[0], extent[3]-margins[3]-margins[1]) #extent = (c*1./ncols, 1.-(r+1)*1./nrows,1./ncols,1./nrows) #f=pylab.figure(fig,figsize=(8.5,5.4)) # Starting to draw : turn interactive off wasinteractive = pylab.isinteractive() pylab.ioff() try: if map is None: map = np.zeros(12)+np.inf cbar=False ax=PA.HpxOrthographicAxes(f,extent,coord=coord,rot=rot, format=format2,flipconv=flip) f.add_axes(ax) if remove_dip: map=pixelfunc.remove_dipole(map,gal_cut=gal_cut, nest=nest,copy=True, verbose=True) elif remove_mono: map=pixelfunc.remove_monopole(map,gal_cut=gal_cut,nest=nest, copy=True,verbose=True) img = ax.projmap(map,nest=nest,xsize=xsize,half_sky=half_sky, coord=coord,vmin=min,vmax=max, cmap=cmap,norm=norm) if cbar: im = ax.get_images()[0] b = im.norm.inverse(np.linspace(0,1,im.cmap.N+1)) v = np.linspace(im.norm.vmin,im.norm.vmax,im.cmap.N) if matplotlib.__version__ >= '0.91.0': cb=f.colorbar(im,ax=ax, orientation='horizontal', shrink=0.5,aspect=25,ticks=PA.BoundaryLocator(), pad=0.05,fraction=0.1,boundaries=b,values=v, format=format) else: # for older matplotlib versions, no ax kwarg cb=f.colorbar(im,orientation='horizontal', shrink=0.5,aspect=25,ticks=PA.BoundaryLocator(), pad=0.05,fraction=0.1,boundaries=b,values=v, format=format) ax.set_title(title) if not notext: ax.text(0.86,0.05,ax.proj.coordsysstr,fontsize=14, fontweight='bold',transform=ax.transAxes) if cbar: cb.ax.text(0.5,-1.0,unit,fontsize=14, transform=cb.ax.transAxes,ha='center',va='center') f.sca(ax) finally: pylab.draw() if wasinteractive: pylab.ion() #pylab.show() if return_projected_map: return img def graticule(dpar=None,dmer=None,coord=None,local=None,**kwds): """Draw a graticule on the current Axes. Parameters ---------- dpar, dmer : float, scalars Interval in degrees between meridians and between parallels coord : {'E', 'G', 'C'} The coordinate system of the graticule (make rotation if needed, using coordinate system of the map if it is defined). local : bool If True, draw a local graticule (no rotation is performed, useful for a gnomonic view, for example) Notes ----- Other keyword parameters will be transmitted to the projplot function. See Also -------- delgraticules """ import pylab f = pylab.gcf() wasinteractive = pylab.isinteractive() pylab.ioff() try: if len(f.get_axes()) == 0: ax=PA.HpxMollweideAxes(f,(0.02,0.05,0.96,0.9),coord=coord) f.add_axes(ax) ax.text(0.86,0.05,ax.proj.coordsysstr,fontsize=14, fontweight='bold',transform=ax.transAxes) for ax in f.get_axes(): if isinstance(ax,PA.SphericalProjAxes): ax.graticule(dpar=dpar,dmer=dmer,coord=coord, local=local,**kwds) finally: pylab.draw() if wasinteractive: pylab.ion() def delgraticules(): """Delete all graticules previously created on the Axes. See Also -------- graticule """ import pylab f = pylab.gcf() wasinteractive = pylab.isinteractive() pylab.ioff() try: for ax in f.get_axes(): if isinstance(ax,PA.SphericalProjAxes): ax.delgraticules() finally: pylab.draw() if wasinteractive: pylab.ion() #pylab.show() def projplot(*args,**kwds): import pylab f = pylab.gcf() wasinteractive = pylab.isinteractive() pylab.ioff() ret = None try: for ax in f.get_axes(): if isinstance(ax,PA.SphericalProjAxes): ret = ax.projplot(*args,**kwds) finally: pylab.draw() if wasinteractive: pylab.ion() #pylab.show() return ret projplot.__doc__ = PA.SphericalProjAxes.projplot.__doc__ def projscatter(*args,**kwds): import pylab f = pylab.gcf() wasinteractive = pylab.isinteractive() pylab.ioff() ret=None try: for ax in f.get_axes(): if isinstance(ax,PA.SphericalProjAxes): ret = ax.projscatter(*args,**kwds) finally: pylab.draw() if wasinteractive: pylab.ion() #pylab.show() return ret projscatter.__doc__ = PA.SphericalProjAxes.projscatter.__doc__ def projtext(*args,**kwds): import pylab f = pylab.gcf() wasinteractive = pylab.isinteractive() pylab.ioff() ret = None try: for ax in f.get_axes(): if isinstance(ax,PA.SphericalProjAxes): ret = ax.projtext(*args,**kwds) finally: pylab.draw() if wasinteractive: pylab.ion() #pylab.show() return ret projtext.__doc__ = PA.SphericalProjAxes.projtext.__doc__ healpy-1.8.1/healpy/fitsfunc.py0000644000175000017500000004004112346125412016725 0ustar zoncazonca00000000000000# # This file is part of Healpy. # # Healpy is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # Healpy is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with Healpy; if not, write to the Free Software # Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA # # For more information about Healpy, see http://code.google.com/p/healpy # """Provides input and output functions for Healpix maps, alm, and cl. """ import pyfits as pf import numpy as np from . import pixelfunc from .sphtfunc import Alm import warnings from .pixelfunc import UNSEEN standard_column_names = { 1 : "I_STOKES", 3 : ["%s_STOKES" % comp for comp in "IQU"], 6 : ["II", "IQ", "IU", "QQ", "QU", "UU"] } class HealpixFitsWarning(Warning): pass def read_cl(filename, dtype=np.float64, h=False): """Reads Cl from an healpix file, as IDL fits2cl. Parameters ---------- filename : str the fits file name dtype : data type, optional the data type of the returned array Returns ------- cl : array the cl array """ hdulist=pf.open(filename) cl = [hdulist[1].data.field(n) for n in range(len(hdulist[1].data.columns))] hdulist.close() if len(cl) == 1: return cl[0] else: return cl def write_cl(filename, cl, dtype=np.float64): """Writes Cl into an healpix file, as IDL cl2fits. Parameters ---------- filename : str the fits file name cl : array the cl array to write to file, currently TT only """ # check the dtype and convert it fitsformat = getformat(dtype) column_names = ['TEMPERATURE','GRADIENT','CURL','G-T','C-T','C-G'] if isinstance(cl, list): cols = [pf.Column(name=column_name, format='%s'%fitsformat, array=column_cl) for column_name, column_cl in zip(column_names[:len(cl)], cl)] else: # we write only one TT cols = [pf.Column(name='TEMPERATURE', format='%s'%fitsformat, array=cl)] tbhdu = pf.new_table(cols) # add needed keywords tbhdu.header.update('CREATOR','healpy') tbhdu.writeto(filename,clobber=True) def write_map(filename,m,nest=False,dtype=np.float32,fits_IDL=True,coord=None,column_names=None): """Writes an healpix map into an healpix file. Parameters ---------- filename : str the fits file name m : array or sequence of 3 arrays the map to write. Possibly a sequence of 3 maps of same size. They will be considered as I, Q, U maps. Supports masked maps, see the `ma` function. nest : bool, optional If True, ordering scheme is assumed to be NESTED, otherwise, RING. Default: RING. The map ordering is not modified by this function, the input map array should already be in the desired ordering (run `ud_grade` beforehand). fits_IDL : bool, optional If True, reshapes columns in rows of 1024, otherwise all the data will go in one column. Default: True coord : str The coordinate system, typically 'E' for Ecliptic, 'G' for Galactic or 'C' for Celestial (equatorial) column_names : str or list Column name or list of column names, if None we use: I_STOKES for 1 component, I/Q/U_STOKES for 3 components, II, IQ, IU, QQ, QU, UU for 6 components, COLUMN_0, COLUMN_1... otherwise """ if not hasattr(m, '__len__'): raise TypeError('The map must be a sequence') # check the dtype and convert it fitsformat = getformat(dtype) m = pixelfunc.ma_to_array(m) if pixelfunc.maptype(m) == 0: # a single map is converted to a list m = [m] if column_names is None: column_names = standard_column_names.get(len(m), ["COLUMN_%d" % n for n in range(len(m))]) else: assert len(column_names) == len(m), "Length column_names != number of maps" # maps must have same length assert len(set(map(len, m))) == 1, "Maps must have same length" nside = pixelfunc.npix2nside(len(m[0])) if nside < 0: raise ValueError('Invalid healpix map : wrong number of pixel') cols=[] for cn, mm in zip(column_names, m): if len(mm) > 1024 and fits_IDL: # I need an ndarray, for reshape: mm2 = np.asarray(mm) cols.append(pf.Column(name=cn, format='1024%s' % fitsformat, array=mm2.reshape(mm2.size/1024,1024))) else: cols.append(pf.Column(name=cn, format='%s' % fitsformat, array=mm)) tbhdu = pf.new_table(cols) # add needed keywords tbhdu.header.update('PIXTYPE','HEALPIX','HEALPIX pixelisation') if nest: ordering = 'NESTED' else: ordering = 'RING' tbhdu.header.update('ORDERING',ordering, 'Pixel ordering scheme, either RING or NESTED') if coord: tbhdu.header.update('COORDSYS',coord, 'Ecliptic, Galactic or Celestial (equatorial)') tbhdu.header.update('EXTNAME','xtension', 'name of this binary table extension') tbhdu.header.update('NSIDE',nside,'Resolution parameter of HEALPIX') tbhdu.header.update('FIRSTPIX', 0, 'First pixel # (0 based)') tbhdu.header.update('LASTPIX',pixelfunc.nside2npix(nside)-1, 'Last pixel # (0 based)') tbhdu.header.update('INDXSCHM','IMPLICIT', 'Indexing: IMPLICIT or EXPLICIT') tbhdu.writeto(filename,clobber=True) def read_map(filename,field=0,dtype=np.float64,nest=False,hdu=1,h=False, verbose=True,memmap=False): """Read an healpix map from a fits file. Parameters ---------- filename : str the fits file name field : int or tuple of int, optional The column to read. Default: 0. By convention 0 is temperature, 1 is Q, 2 is U. Field can be a tuple to read multiple columns (0,1,2) dtype : data type, optional Force the conversion to some type. Default: np.float64 nest : bool, optional If True return the map in NEST ordering, otherwise in RING ordering; use fits keyword ORDERING to decide whether conversion is needed or not If None, no conversion is performed. hdu : int, optional the header number to look at (start at 0) h : bool, optional If True, return also the header. Default: False. verbose : bool, optional If True, print a number of diagnostic messages memmap : bool, optional Argument passed to pyfits.open, if True, the map is not read into memory, but only the required pixels are read when needed. Default: False. Returns ------- m | (m0, m1, ...) [, header] : array or a tuple of arrays, optionally with header appended The map(s) read from the file, and the header if *h* is True. """ hdulist=pf.open(filename, memmap=memmap) #print hdulist[1].header nside = hdulist[hdu].header.get('NSIDE') if nside is None: warnings.warn("No NSIDE in the header file : will use length of array", HealpixFitsWarning) else: nside = int(nside) if verbose: print('NSIDE = {0:d}'.format(nside)) if not pixelfunc.isnsideok(nside): raise ValueError('Wrong nside parameter.') ordering = hdulist[hdu].header.get('ORDERING','UNDEF').strip() if ordering == 'UNDEF': ordering = (nest and 'NESTED' or 'RING') warnings.warn("No ORDERING keyword in header file : " "assume %s"%ordering) if verbose: print('ORDERING = {0:s} in fits file'.format(ordering)) sz=pixelfunc.nside2npix(nside) if not (hasattr(field, '__len__') or isinstance(field, str)): field = (field,) ret = [] for ff in field: try: m=hdulist[hdu].data.field(ff).astype(dtype).ravel() except pf.VerifyError as e: print(e) print("Trying to fix a badly formatted header") m=hdulist[hdu].verify("fix") m=hdulist[hdu].data.field(ff).astype(dtype).ravel() if (not pixelfunc.isnpixok(m.size) or (sz>0 and sz != m.size)) and verbose: print('nside={0:d}, sz={1:d}, m.size={2:d}'.format(nside,sz,m.size)) raise ValueError('Wrong nside parameter.') if not nest is None: # no conversion with None if nest and ordering == 'RING': idx = pixelfunc.nest2ring(nside,np.arange(m.size,dtype=np.int32)) m = m[idx] if verbose: print('Ordering converted to NEST') elif (not nest) and ordering == 'NESTED': idx = pixelfunc.ring2nest(nside,np.arange(m.size,dtype=np.int32)) m = m[idx] if verbose: print('Ordering converted to RING') try: m[pixelfunc.mask_bad(m)] = UNSEEN except OverflowError: pass ret.append(m) if len(ret) == 1: if h: return ret[0],hdulist[hdu].header.items() else: return ret[0] else: if h: ret.append(hdulist[hdu].header.items()) return tuple(ret) else: return tuple(ret) def write_alm(filename,alms,out_dtype=None,lmax=-1,mmax=-1,mmax_in=-1): """Write alms to a fits file. In the fits file the alms are written with explicit index scheme, index = l*l + l + m +1, possibly out of order. By default write_alm makes a table with the same precision as the alms. If specified, the lmax and mmax parameters truncate the input data to include only alms for which l <= lmax and m <= mmax. Parameters ---------- filename : str The filename of the output fits file alms : array, complex A complex ndarray holding the alms, index = m*(2*lmax+1-m)/2+l, see Alm.getidx lmax : int, optional The maximum l in the output file mmax : int, optional The maximum m in the output file out_dtype : data type, optional data type in the output file (must be a numpy dtype). Default: *alms*.real.dtype mmax_in : int, optional maximum m in the input array """ l2max = Alm.getlmax(len(alms),mmax=mmax_in) if (lmax != -1 and lmax > l2max): raise ValueError("Too big lmax in parameter") elif lmax == -1: lmax = l2max if mmax_in == -1: mmax_in = l2max if mmax == -1: mmax = lmax if mmax > mmax_in: mmax = mmax_in if (out_dtype == None): out_dtype = alms.real.dtype l,m = Alm.getlm(lmax) idx = np.where((l <= lmax)*(m <= mmax)) l = l[idx] m = m[idx] idx_in_original = Alm.getidx(l2max, l=l, m=m) index = l**2 + l + m + 1 out_data = np.empty(len(index), dtype=[('index','i'), ('real',out_dtype), ('imag',out_dtype)]) out_data['index'] = index out_data['real'] = alms.real[idx_in_original] out_data['imag'] = alms.imag[idx_in_original] cindex = pf.Column(name="index", format=getformat(np.int32), unit="l*l+l+m+1", array=out_data['index']) creal = pf.Column(name="real", format=getformat(out_dtype), unit="unknown", array=out_data['real']) cimag = pf.Column(name="imag", format=getformat(out_dtype), unit="unknown", array=out_data['imag']) tbhdu = pf.new_table([cindex,creal,cimag]) tbhdu.writeto(filename,clobber=True) def read_alm(filename,hdu=1,return_mmax=False): """Read alm from a fits file. In the fits file, the alm are written with explicit index scheme, index = l**2+l+m+1, while healpix cxx uses index = m*(2*lmax+1-m)/2+l. The conversion is done in this function. Parameters ---------- filename : str The name of the fits file to read hdu : int, optional The header to read. Start at 0. Default: hdu=1 return_mmax : bool, optional If true, both the alms and mmax is returned in a tuple. Default: return_mmax=False Returns ------- alms[, mmax] : complex array or tuple of a complex array and an int The alms read from the file and optionally mmax read from the file """ idx, almr, almi = mrdfits(filename,hdu=hdu) l = np.floor(np.sqrt(idx-1)).astype(np.long) m = idx - l**2 - l - 1 if (m<0).any(): raise ValueError('Negative m value encountered !') lmax = l.max() mmax = m.max() alm = almr*(0+0j) i = Alm.getidx(lmax,l,m) alm.real[i] = almr alm.imag[i] = almi if return_mmax: return alm, mmax else: return alm ## Generic functions to read and write column of data in fits file def mrdfits(filename,hdu=1): """Read a table in a fits file. Parameters ---------- filename : str The name of the fits file to read hdu : int, optional The header to read. Start at 0. Default: hdu=1 Returns ------- cols : a list of arrays A list of column data in the given header """ hdulist=pf.open(filename) if hdu>=len(hdulist): raise ValueError('Available hdu in [0-%d]'%len(hdulist)) hdu=hdulist[hdu] val=[] for i in range(len(hdu.columns)): val.append(hdu.data.field(i)) hdulist.close() del hdulist return val def mwrfits(filename,data,hdu=1,colnames=None,keys=None): """Write columns to a fits file in a table extension. Parameters ---------- filename : str The fits file name data : list of 1D arrays A list of 1D arrays to write in the table hdu : int, optional The header where to write the data. Default: 1 colnames : list of str The column names keys : dict-like A dictionary with keywords to write in the header """ # Check the inputs if colnames is not None: if len(colnames) != len(data): raise ValueError("colnames and data must the same length") else: colnames = ['']*len(data) cols=[] for line in xrange(len(data)): cols.append(pf.Column(name=colnames[line], format=getformat(data[line]), array=data[line])) tbhdu = pf.new_table(cols) if type(keys) is dict: for k,v in keys.items(): tbhdu.header.update(k,v) # write the file tbhdu.writeto(filename,clobber=True) def getformat(t): """Get the FITS convention format string of data type t. Parameters ---------- t : data type The data type for which the FITS type is requested Returns ------- fits_type : str or None The FITS string code describing the data type, or None if unknown type. """ conv = { np.dtype(np.bool): 'L', np.dtype(np.uint8): 'B', np.dtype(np.int16): 'I', np.dtype(np.int32): 'J', np.dtype(np.int64): 'K', np.dtype(np.float32): 'E', np.dtype(np.float64): 'D', np.dtype(np.complex64): 'C', np.dtype(np.complex128): 'M' } try: if t in conv: return conv[t] except: pass try: if np.dtype(t) in conv: return conv[np.dtype(t)] except: pass try: if np.dtype(type(t)) in conv: return conv[np.dtype(type(t))] except: pass try: if np.dtype(type(t[0])) in conv: return conv[np.dtype(type(t[0]))] except: pass try: if t is str: return 'A' except: pass try: if type(t) is str: return 'A%d'%(len(t)) except: pass try: if type(t[0]) is str: l=max(len(s) for s in t) return 'A%d'%(l) except: pass healpy-1.8.1/healpy/rotator.py0000644000175000017500000010426712346125412016611 0ustar zoncazonca00000000000000# # This file is part of Healpy. # # Healpy is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # Healpy is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with Healpy; if not, write to the Free Software # Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA # # For more information about Healpy, see http://code.google.com/p/healpy # import numpy as np import warnings coordname = {'G': 'Galactic', 'E': 'Ecliptic', 'C': 'Equatorial'} class ConsistencyWarning(Warning): """Warns for a problem in the consistency of data """ pass if __name__ != '__main__': warnings.filterwarnings("always", category=ConsistencyWarning, module=__name__) class Rotator(object): """Rotation operator, including astronomical coordinate systems. This class provides tools for spherical rotations. It is meant to be used in the healpy library for plotting, and for this reason reflects the convention used in the Healpix IDL library. Parameters ---------- rot : None or sequence Describe the rotation by its euler angle. See :func:`euler_matrix_new`. coord : None or sequence of str Describe the coordinate system transform. If *rot* is also given, the coordinate transform is applied first, and then the rotation. inv : bool If True, the inverse rotation is defined. (Default: False) deg : bool If True, angles are assumed to be in degree. (Default: True) eulertype : str The Euler angle convention used. See :func:`euler_matrix_new`. Attributes ---------- mat coordin coordout coordinstr coordoutstr rots coords Examples -------- >>> r = Rotator(coord=['G','E']) # Transforms galactic to ecliptic coordinates >>> theta_gal, phi_gal = np.pi/2., 0. >>> theta_ecl, phi_ecl = r(theta_gal, phi_gal) # Apply the conversion >>> print(theta_ecl) 1.66742286715 >>> print(phi_ecl) -1.62596400306 >>> theta_ecl, phi_ecl = Rotator(coord='ge')(theta_gal, phi_gal) # In one line >>> print(theta_ecl) 1.66742286715 >>> print(phi_ecl) -1.62596400306 >>> vec_gal = np.array([1, 0, 0]) #Using vectors >>> vec_ecl = r(vec_gal) >>> print(vec_ecl) [-0.05488249 -0.99382103 -0.09647625] """ ErrMessWrongPar = ("rot and coord must be single elements or " "sequence of same size.") def __init__(self,rot=None,coord=None,inv=None,deg=True, eulertype='ZYX'): """Create a rotator with given parameters. - rot: a float, a tuple of 1,2 or 3 floats or a sequence of tuples. If it is a sequence of tuple, it must have the same length as coord. - coord: a string or a tuple of 1 or 2 strings or a sequence of tuple If it is a sequence of tuple, it must have same length as rot. - inv: whether to use inverse rotation or not - deg: if True, angles in rot are assumed in degree (default: True) - eulertype: the convention for Euler angles in rot. Note: the coord system conversion is applied first, then the rotation. """ rot_is_seq = (hasattr(rot,'__len__') and hasattr(rot[0], '__len__')) coord_is_seq = (hasattr(coord,'__len__') and hasattr(coord[0],'__len__') and type(coord[0]) is not str) if rot_is_seq and coord_is_seq: if len(rot) != len(coord): raise ValueError(Rotator.ErrMessWrongPar) else: rots = rot coords = coord elif (rot_is_seq or coord_is_seq) and (rot is not None and coord is not None): raise ValueError(Rotator.ErrMessWrongPar) else: rots = [rot] coords = [coord] inv_is_seq = hasattr(inv,'__len__') if inv_is_seq: if len(inv) != len(rots): raise ValueError("inv must have same length as rot and/or coord") invs = inv else: invs = [inv]*len(rots) # check the argument and normalize them if eulertype in ['ZYX','X','Y']: self._eultype = eulertype else: self._eultype = 'ZYX' self._rots = [] self._coords = [] self._invs = [] for r,c,i in zip(rots,coords,invs): rn = normalise_rot(r,deg=deg) # if self._eultype in ['X','Y']: # rn[1] = -rn[1] cn = normalise_coord(c) self._rots.append(rn) # append(rn) or insert(0, rn) ? self._coords.append(cn) # append(cn) or insert(0, cn) ? self._invs.append(bool(i)) if not self.consistent: warnings.warn("The chain of coord system rotations is not consistent", category=ConsistencyWarning) self._update_matrix() def _update_matrix(self): self._matrix = np.identity(3) self._do_rotation = False for r,c,i in zip(self._rots, self._coords,self._invs): rotmat,do_rot,rotnorm = get_rotation_matrix(r, eulertype=self._eultype) convmat,do_conv,coordnorm = get_coordconv_matrix(c) r = np.dot(rotmat,convmat) if i: r = r.T self._matrix = np.dot(self._matrix, r) self._do_rotation = self._do_rotation or (do_rot or do_conv) def _is_coords_consistent(self): for c,i in zip(self._coords,self._invs): break for cnext,inext in zip(self._coords[1:],self._invs[1:]): if c[i] != cnext[not inext]: return False c,i = cnext,inext return True consistent = property(_is_coords_consistent, doc="consistency of the coords transform chain") def __eq__(self,a): if type(a) is not type(self): return False # compare the _rots v = [np.allclose(x,y,rtol=0,atol=1e-15) for x,y in zip(self._rots,a._rots)] return ( np.array(v).all() and (self._coords == a._coords) and (self._invs == a._invs) ) def __call__(self,*args,**kwds): """Use the rotator to rotate either spherical coordinates (theta, phi) or a vector (x,y,z). You can use lonla keyword to use longitude, latitude (in degree) instead of theta, phi (in radian). In this case, returns longitude, latitude in degree. Accepted forms: r(x,y,z) # x,y,z either scalars or arrays r(theta,phi) # theta, phi scalars or arrays r(lon,lat,lonlat=True) # lon, lat scalars or arrays r(vec) # vec 1-D array with 3 elements, or 2-D array 3xN r(direction) # direction 1-D array with 2 elements, or 2xN array Parameters ---------- vec_or_dir : array or multiple arrays The direction to rotate. See above for accepted formats. lonlat : bool, optional If True, assumes the input direction is longitude/latitude in degrees. Otherwise, assumes co-latitude/longitude in radians. Default: False inv : bool, optional If True, applies the inverse rotation. Default: False. """ if kwds.pop('inv',False): m=self._matrix.T else: m=self._matrix lonlat = kwds.pop('lonlat',False) if len(args) == 1: arg=args[0] if not hasattr(arg,'__len__') or len(arg) < 2 or len(arg) > 3: raise TypeError('Argument must be a sequence of 2 or 3 ' 'elements') if len(arg) == 2: return rotateDirection(m,arg[0],arg[1], self._do_rotation,lonlat=lonlat) else: return rotateVector(m,arg[0],arg[1],arg[2], self._do_rotation) elif len(args) == 2: return rotateDirection(m,args[0],args[1], self._do_rotation,lonlat=lonlat) elif len(args) == 3: return rotateVector(m,args[0],args[1],args[2], self._do_rotation) else: raise TypeError('Either 1, 2 or 3 arguments accepted') def __mul__(self,a): """Composition of rotation. """ if not isinstance(a,Rotator): raise TypeError("A Rotator can only multiply another Rotator " "(composition of rotations)") rots = self._rots + a._rots coords = self._coords + a._coords invs = self._invs + a._invs return Rotator(rot=rots,coord=coords,inv=invs,deg=False) def __rmul__(self,b): if not isinstance(b,Rotator): raise TypeError("A Rotator can only be multiplied by another Rotator " "(composition of rotations)") rots = b._rots + self._rots coords = b._coords + self._coords invs = self._invs + a._invs return Rotator(rot=rots,coord=coords,inv=invs,deg=False) def __nonzero__(self): return self._do_rotation def get_inverse(self): rots = self._rots[::-1] coords = self._coords[::-1] invs = [ not i for i in self._invs[::-1]] return Rotator(rot=rots,coord=coords,inv=invs,deg=False) #I = property(get_inverse,doc='Return a new rotator representing the ' # 'inverse rotation') def I(self,*args,**kwds): """Rotate the given vector or direction using the inverse matrix. rot.I(vec) <==> rot(vec,inv=True) """ kwds['inv'] = True return self.__call__(*args,**kwds) @property def mat(self): """The matrix representing the rotation. """ return np.matrix(self._matrix) @property def coordin(self): """The input coordinate system. """ if not self.consistent: return None for c,i in zip(self._coords,self._invs): pass return c[i] @property def coordout(self): """The output coordinate system. """ if not self.consistent: return None for c,i in zip(self._coords,self._invs): pass return c[not i] @property def coordinstr(self): """The input coordinate system in str. """ return coordname.get(self.coordin,'') @property def coordoutstr(self): """The output coordinate system in str. """ return coordname.get(self.coordout,'') @property def rots(self): """The sequence of rots defining the rotation. """ return self._rots @property def coords(self): """The sequence of coords defining the rotation. """ return self._coords def do_rot(self,i): """Returns True if rotation is not (close to) identity. """ return not np.allclose(self.rots[i],np.zeros(3),rtol=0.,atol=1.e-15) def angle_ref(self,*args,**kwds): """Compute the angle between transverse reference direction of initial and final frames For example, if angle of polarisation is psi in initial frame, it will be psi+angle_ref in final frame. Parameters ---------- dir_or_vec : array Direction or vector (see Rotator.__call__) lonlat: bool, optional If True, assume input is longitude,latitude in degrees. Otherwise, theta,phi in radian. Default: False inv : bool, optional If True, use the inverse transforms. Default: False Returns ------- angle : float, scalar or array Angle in radian (a scalar or an array if input is a sequence of direction/vector) """ R = self lonlat = kwds.get('lonlat',False) inv = kwds.get('inv',False) if len(args) == 1: arg=args[0] if not hasattr(arg,'__len__') or len(arg) < 2 or len(arg) > 3: raise TypeError('Argument must be a sequence of 2 or 3 ' 'elements') if len(arg) == 2: v = dir2vec(arg[0],arg[1],lonlat=lonlat) else: v = arg elif len(args) == 2: v = dir2vec(args[0],args[1],lonlat=lonlat) elif len(args) == 3: v = args else: raise TypeError('Either 1, 2 or 3 arguments accepted') vp = R(v,inv=inv) north_pole = R([0.,0.,1.],inv=inv) sinalpha = north_pole[0]*vp[1]-north_pole[1]*vp[0] cosalpha = north_pole[2] - vp[2]*np.dot(north_pole,vp) return np.arctan2(sinalpha,cosalpha) def __repr__(self): return '[ '+', '.join([str(self._coords), str(self._rots), str(self._invs)]) +' ]' __str__ = __repr__ ################################################################ # # Helpers function for rotation # used in the Rotator class. def rotateVector(rotmat,vec,vy=None,vz=None, do_rot=True): """Rotate a vector (or a list of vectors) using the rotation matrix given as first argument. Parameters ---------- rotmat : float, array-like shape (3,3) The rotation matrix vec : float, scalar or array-like The vector to transform (shape (3,) or (3,N)), or x component (scalar or shape (N,)) if vy and vz are given vy : float, scalar or array-like, optional The y component of the vector (scalar or shape (N,)) vz : float, scalar or array-like, optional The z component of the vector (scalar or shape (N,)) do_rot : bool, optional if True, really perform the operation, if False do nothing. Returns ------- vec : float, array The component of the rotated vector(s). See Also -------- Rotator """ if vy is None and vz is None: if do_rot: return np.tensordot(rotmat,vec,axes=(1,0)) else: return vec elif vy is not None and vz is not None: if do_rot: return np.tensordot(rotmat,np.array([vec,vy,vz]),axes=(1,0)) else: return vec,vy,vz else: raise TypeError("You must give either vec only or vec, vy " "and vz parameters") def rotateDirection(rotmat,theta,phi=None,do_rot=True,lonlat=False): """Rotate the vector described by angles theta,phi using the rotation matrix given as first argument. Parameters ---------- rotmat : float, array-like shape (3,3) The rotation matrix theta : float, scalar or array-like The angle theta (scalar or shape (N,)) or both angles (scalar or shape (2, N)) if phi is not given. phi : float, scalar or array-like, optionnal The angle phi (scalar or shape (N,)). do_rot : bool, optional if True, really perform the operation, if False do nothing. lonlat : bool If True, input angles are assumed to be longitude and latitude in degree, otherwise, they are co-latitude and longitude in radians. Returns ------- angles : float, array The angles of describing the rotated vector(s). See Also -------- Rotator """ vx,vy,vz=rotateVector(rotmat,dir2vec(theta,phi,lonlat=lonlat),do_rot=do_rot) return vec2dir(vx,vy,vz,lonlat=lonlat) def vec2dir(vec,vy=None,vz=None,lonlat=False): """Transform a vector to angle given by theta,phi. Parameters ---------- vec : float, scalar or array-like The vector to transform (shape (3,) or (3,N)), or x component (scalar or shape (N,)) if vy and vz are given vy : float, scalar or array-like, optional The y component of the vector (scalar or shape (N,)) vz : float, scalar or array-like, optional The z component of the vector (scalar or shape (N,)) lonlat : bool, optional If True, return angles will be longitude and latitude in degree, otherwise, angles will be longitude and co-latitude in radians (default) Returns ------- angles : float, array The angles (unit depending on *lonlat*) in an array of shape (2,) (if scalar input) or (2, N) See Also -------- :func:`dir2vec`, :func:`pixelfunc.ang2vec`, :func:`pixelfunc.vec2ang` """ if np.any(np.isnan(vec)): return np.nan, np.nan if vy is None and vz is None: vx,vy,vz = vec elif vy is not None and vz is not None: vx=vec else: raise TypeError("You must either give both vy and vz or none of them") r = np.sqrt(vx**2+vy**2+vz**2) ang = np.empty((2, r.size)) ang[0, :] = np.arccos(vz / r) ang[1, :] = np.arctan2(vy, vx) if lonlat: ang = np.degrees(ang) np.negative(ang[0, :], ang[0, :]) ang[0, :] += 90. return ang[::-1,:].squeeze() else: return ang.squeeze() def dir2vec(theta,phi=None,lonlat=False): """Transform a direction theta,phi to a unit vector. Parameters ---------- theta : float, scalar or array-like The angle theta (scalar or shape (N,)) or both angles (scalar or shape (2, N)) if phi is not given. phi : float, scalar or array-like, optionnal The angle phi (scalar or shape (N,)). lonlat : bool If True, input angles are assumed to be longitude and latitude in degree, otherwise, they are co-latitude and longitude in radians. Returns ------- vec : array The vector(s) corresponding to given angles, shape is (3,) or (3, N). See Also -------- :func:`vec2dir`, :func:`pixelfunc.ang2vec`, :func:`pixelfunc.vec2ang` """ if phi is None: theta,phi=theta if lonlat: lon,lat=theta,phi theta,phi = np.pi/2.-np.radians(lat),np.radians(lon) ct,st,cp,sp = np.cos(theta),np.sin(theta),np.cos(phi),np.sin(phi) vec = np.empty((3, ct.size), np.float64) vec[0, :] = st * cp vec[1, :] = st * sp vec[2, :] = ct return vec.squeeze() def angdist(dir1,dir2,lonlat=False): """Returns the angular distance between dir1 and dir2. Parameters ---------- dir1, dir2 : float, array-like The directions between which computing the angular distance. Angular if len(dir) == 2 or vector if len(dir) == 3. See *lonlat* for unit lonlat : bool, scalar or sequence If True, angles are assumed to be longitude and latitude in degree, otherwise they are interpreted as colatitude and longitude in radian. If a sequence, lonlat[0] applies to dir1 and lonlat[1] applies to dir2. Returns ------- angles : float, scalar or array-like The angle(s) between dir1 and dir2 in radian. Examples -------- >>> import healpy as hp >>> hp.rotator.angdist([.2,0], [.2, 1e-6]) array([ 1.98669331e-07]) """ if hasattr(lonlat,'__len__') and len(lonlat) == 2: lonlat1,lonlat2 = lonlat else: lonlat1=lonlat2=lonlat dir1 = np.asarray(dir1) dir2 = np.asarray(dir2) if dir1.ndim == 2: if dir1.shape[0] == 2: # theta, phi -> vec vec1 = dir2vec(dir1, lonlat = lonlat1) else: vec1 = np.reshape(dir1, (3, -1)) vec1 = normalize_vec(vec1) elif dir1.ndim == 1: if dir1.shape[0] == 2: # theta, phi -> vec vec1 = np.reshape(dir2vec(dir1, lonlat = lonlat1), (3, 1)) else: vec1 = np.reshape(dir1, (3, 1)) vec1 = normalize_vec(vec1) if dir2.ndim == 2: if dir2.shape[0] == 2: # theta, phi -> vec vec2 = dir2vec(dir2, lonlat = lonlat2) else: vec2 = np.reshape(dir2, (3, -1)) vec2 = normalize_vec(vec2) elif dir2.ndim == 1: if dir2.shape[0] == 2: # theta, phi -> vec vec2 = np.reshape(dir2vec(dir2, lonlat = lonlat2), (3, 1)) else: vec2 = np.reshape(dir2, (3, 1)) vec2 = normalize_vec(vec2) # compute vec product vec_prod = np.sqrt((np.cross(vec1.T, vec2.T)**2).sum(axis=1)) # compute scalar product scal_prod = (vec1*vec2).sum(axis=0) return np.arctan2(vec_prod, scal_prod) def normalize_vec(vec): """Normalize the vector(s) *vec* (in-place if it is a ndarray). Parameters ---------- vec : float, array-like of shape (D,) or (D, N) The D-vector(s) to normalize. Returns ------- vec_normed : float, array Normalized vec, shape (D,) or (D, N) """ vec = np.array(vec, np.float64) r = np.sqrt(np.sum(vec ** 2, axis = 0)) vec /= r return vec ####################################################### # # Manage the coord system conventions # def check_coord(c): """Check if parameter is a valid coord system. Raise a TypeError exception if it is not, otherwise returns the normalized coordinate system name. """ if c is None: return c if type(c) is not str: raise TypeError('Coordinate must be a string (G[alactic],' ' E[cliptic], C[elestial]' ' or Equatorial=Celestial)') if c[0].upper() == 'G': x='G' elif c[0].upper() == 'E' and c != 'Equatorial': x='E' elif c[0].upper() == 'C' or c == 'Equatorial': x='C' else: raise ValueError('Wrong coordinate (either G[alactic],' ' E[cliptic], C[elestial]' ' or Equatorial=Celestial)') return x def normalise_coord(coord): """Normalise the coord argument. Coord sys are either 'E','G', 'C' or 'X' if undefined. Input: either a string or a sequence of string. Output: a tuple of two strings, each being one of the norm coord sys name above. eg, 'E' -> ['E','E'], ['Ecliptic','G'] -> ['E','G'] None -> ['X','X'] etc. """ coord_norm = [] if coord is None: coord = (None,None) coord=tuple(coord) if len(coord) > 2: raise TypeError('Coordinate must be a string (G[alactic],' ' E[cliptic] or C[elestial])' ' or a sequence of 2 strings') for x in coord: coord_norm.append(check_coord(x)) if len(coord_norm) < 2: coord_norm.append(coord_norm[0]) return tuple(coord_norm) def normalise_rot(rot,deg=False): """Return rot possibly completed with zeroes to reach size 3. If rot is None, return a vector of 0. If deg is True, convert from degree to radian, otherwise assume input is in radian. """ if deg: convert=np.pi/180. else: convert=1. if rot is None: rot=np.zeros(3) else: rot=np.array(rot,np.float64).flatten()*convert rot.resize(3) return rot def get_rotation_matrix(rot, deg=False, eulertype='ZYX'): """Return the rotation matrix corresponding to angles given in rot. Usage: matrot,do_rot,normrot = get_rotation_matrix(rot) Input: - rot: either None, an angle or a tuple of 1,2 or 3 angles corresponding to Euler angles. Output: - matrot: 3x3 rotation matrix - do_rot: True if rotation is not identity, False otherwise - normrot: the normalized version of the input rot. """ rot = normalise_rot(rot, deg=deg) if not np.allclose(rot,np.zeros(3),rtol=0.,atol=1.e-15): do_rot = True else: do_rot = False if eulertype == 'X': matrot=euler_matrix_new(rot[0],-rot[1],rot[2],X=True) elif eulertype == 'Y': matrot=euler_matrix_new(rot[0],-rot[1],rot[2],Y=True) else: matrot=euler_matrix_new(rot[0],-rot[1],rot[2],ZYX=True) return matrot,do_rot,rot def get_coordconv_matrix(coord): """Return the rotation matrix corresponding to coord systems given in coord. Usage: matconv,do_conv,normcoord = get_coordconv_matrix(coord) Input: - coord: a tuple with initial and final coord systems. See normalise_coord. Output: - matconv: the euler matrix for coord sys conversion - do_conv: True if matconv is not identity, False otherwise - normcoord: the tuple of initial and final coord sys. History: adapted from CGIS IDL library. """ coord_norm = normalise_coord(coord) if coord_norm[0] == coord_norm[1]: matconv = np.identity(3) do_conv = False else: eps = 23.452294 - 0.0130125 - 1.63889E-6 + 5.02778E-7 eps = eps * np.pi / 180. # ecliptic to galactic e2g = np.array([[-0.054882486, -0.993821033, -0.096476249], [ 0.494116468, -0.110993846, 0.862281440], [-0.867661702, -0.000346354, 0.497154957]]) # ecliptic to equatorial e2q = np.array([[1., 0. , 0. ], [0., np.cos( eps ), -1. * np.sin( eps )], [0., np.sin( eps ), np.cos( eps ) ]]) # galactic to ecliptic g2e = np.linalg.inv(e2g) # galactic to equatorial g2q = np.dot(e2q , g2e) # equatorial to ecliptic q2e = np.linalg.inv(e2q) # equatorial to galactic q2g = np.dot(e2g , q2e) if coord_norm == ('E','G'): matconv = e2g elif coord_norm == ('G','E'): matconv = g2e elif coord_norm == ('E','C'): matconv = e2q elif coord_norm == ('C','E'): matconv = q2e elif coord_norm == ('C','G'): matconv = q2g elif coord_norm == ('G','C'): matconv = g2q else: raise ValueError('Wrong coord transform :',coord_norm) do_conv = True return matconv,do_conv,coord_norm ################################################### ## ## ## euler functions ## ## ## ###### ####### def euler(ai, bi, select, FK4 = 0): """ NAME: euler PURPOSE: Transform between Galactic, celestial, and ecliptic coordinates. EXPLANATION: Use the procedure ASTRO to use this routine interactively CALLING SEQUENCE: EULER, AI, BI, AO, BO, [ SELECT, /FK4, SELECT = ] INPUTS: AI - Input Longitude in DEGREES, scalar or vector. If only two parameters are supplied, then AI and BI will be modified to contain the output longitude and latitude. BI - Input Latitude in DEGREES OPTIONAL INPUT: SELECT - Integer (1-6) specifying type of coordinate transformation. SELECT From To | SELECT From To 1 RA-Dec (2000) Galactic | 4 Ecliptic RA-Dec 2 Galactic RA-DEC | 5 Ecliptic Galactic 3 RA-Dec Ecliptic | 6 Galactic Ecliptic If not supplied as a parameter or keyword, then EULER will prompt for the value of SELECT Celestial coordinates (RA, Dec) should be given in equinox J2000 unless the /FK4 keyword is set. OUTPUTS: AO - Output Longitude in DEGREES BO - Output Latitude in DEGREES INPUT KEYWORD: /FK4 - If this keyword is set and non-zero, then input and output celestial and ecliptic coordinates should be given in equinox B1950. /SELECT - The coordinate conversion integer (1-6) may alternatively be specified as a keyword NOTES: EULER was changed in December 1998 to use J2000 coordinates as the default, ** and may be incompatible with earlier versions***. REVISION HISTORY: Written W. Landsman, February 1987 Adapted from Fortran by Daryl Yentis NRL Converted to IDL V5.0 W. Landsman September 1997 Made J2000 the default, added /FK4 keyword W. Landsman December 1998 Add option to specify SELECT as a keyword W. Landsman March 2003 Converted to python by K. Ganga December 2007 """ # npar = N_params() # if npar LT 2 then begin # print,'Syntax - EULER, AI, BI, A0, B0, [ SELECT, /FK4, SELECT= ]' # print,' AI,BI - Input longitude,latitude in degrees' # print,' AO,BO - Output longitude, latitude in degrees' # print,' SELECT - Scalar (1-6) specifying transformation type' # return # endif PI = np.pi twopi = 2.0*PI fourpi = 4.0*PI deg_to_rad = 180.0/PI # # ; J2000 coordinate conversions are based on the following constants # ; (see the Hipparcos explanatory supplement). # ; eps = 23.4392911111 # Obliquity of the ecliptic # ; alphaG = 192.85948d Right Ascension of Galactic North Pole # ; deltaG = 27.12825d Declination of Galactic North Pole # ; lomega = 32.93192d Galactic longitude of celestial equator # ; alphaE = 180.02322d Ecliptic longitude of Galactic North Pole # ; deltaE = 29.811438523d Ecliptic latitude of Galactic North Pole # ; Eomega = 6.3839743d Galactic longitude of ecliptic equator # if FK4 == 1: equinox = '(B1950)' psi = [ 0.57595865315, 4.9261918136, 0.00000000000, 0.0000000000, 0.11129056012, 4.7005372834] stheta =[ 0.88781538514,-0.88781538514, 0.39788119938,-0.39788119938, 0.86766174755,-0.86766174755] ctheta =[ 0.46019978478, 0.46019978478, 0.91743694670, 0.91743694670, 0.49715499774, 0.49715499774] phi = [ 4.9261918136, 0.57595865315, 0.0000000000, 0.00000000000, 4.7005372834, 0.11129056012] else: equinox = '(J2000)' psi = [ 0.57477043300, 4.9368292465, 0.00000000000, 0.0000000000, 0.11142137093, 4.71279419371] stheta =[ 0.88998808748,-0.88998808748, 0.39777715593,-0.39777715593, 0.86766622025,-0.86766622025] ctheta =[ 0.45598377618, 0.45598377618, 0.91748206207, 0.91748206207, 0.49714719172, 0.49714719172] phi = [ 4.9368292465, 0.57477043300, 0.0000000000, 0.00000000000, 4.71279419371, 0.11142137093] # i = select - 1 # IDL offset a = ai/deg_to_rad - phi[i] b = bi/deg_to_rad sb = np.sin(b) cb = np.cos(b) cbsa = cb * np.sin(a) b = -stheta[i] * cbsa + ctheta[i] * sb #bo = math.asin(where(b<1.0, b, 1.0)*deg_to_rad) bo = np.arcsin(b)*deg_to_rad # a = np.arctan2( ctheta[i] * cbsa + stheta[i] * sb, cb * np.cos(a) ) ao = np.fmod( (a+psi[i]+fourpi), twopi) * deg_to_rad return ao, bo def euler_matrix_new(a1,a2,a3,X=True,Y=False,ZYX=False,deg=False): """ NAME: euler_matrix_new PURPOSE: computes the Euler matrix of an arbitrary rotation described by 3 Euler angles correct bugs present in Euler_Matrix CALLING SEQUENCE: result = euler_matrix_new (a1, a2, a3 [,X, Y, ZYX, DEG ]) INPUTS: a1, a2, a3 = Euler angles, scalar (in radian by default, in degree if DEG is set) all the angles are measured counterclockwise correspond to x, y, zyx-conventions (see Goldstein) the default is x KEYWORD PARAMETERS: DEG : if set the angle are measured in degree X : rotation a1 around original Z rotation a2 around interm X rotation a3 around final Z DEFAULT, classical mechanics convention Y : rotation a1 around original Z rotation a2 around interm Y rotation a3 around final Z quantum mechanics convention (override X) ZYX : rotation a1 around original Z rotation a2 around interm Y rotation a3 around final X aeronautics convention (override X) * these last three keywords are obviously mutually exclusive * OUTPUTS: result is a 3x3 matrix USAGE: if vec is an Nx3 array containing N 3D vectors, vec # euler_matrix_new(a1,a2,a3,/Y) will be the rotated vectors MODIFICATION HISTORY: March 2002, EH, Caltech, rewritting of euler_matrix convention euler_matrix_new euler_matrix X: M_new(a,b,c,/X) = M_old(-a,-b,-c,/X) = Transpose( M_old(c, b, a,/X)) Y: M_new(a,b,c,/Y) = M_old(-a, b,-c,/Y) = Transpose( M_old(c,-b, a,/Y)) ZYX: M_new(a,b,c,/Z) = M_old(-a, b,-c,/Z) """ t_k = 0 if ZYX: t_k = t_k + 1 #if X: t_k = t_k + 1 if Y: t_k = t_k + 1 if t_k > 1: raise ValueError('Choose either X, Y or ZYX convention') convert = 1.0 if deg: convert = np.pi/180. c1 = np.cos(a1*convert) s1 = np.sin(a1*convert) c2 = np.cos(a2*convert) s2 = np.sin(a2*convert) c3 = np.cos(a3*convert) s3 = np.sin(a3*convert) if ZYX: m1 = np.array([[ c1,-s1, 0], [ s1, c1, 0], [ 0, 0, 1]]) # around z m2 = np.array([[ c2, 0, s2], [ 0, 1, 0], [-s2, 0, c2]]) # around y m3 = np.array([[ 1, 0, 0], [ 0, c3,-s3], [ 0, s3, c3]]) # around x elif Y: m1 = np.array([[ c1,-s1, 0], [ s1, c1, 0], [ 0, 0, 1]]) # around z m2 = np.array([[ c2, 0, s2], [ 0, 1, 0], [-s2, 0, c2]]) # around y m3 = np.array([[ c3,-s3, 0], [ s3, c3, 0], [ 0, 0, 1]]) # around z else: m1 = np.array([[ c1,-s1, 0], [ s1, c1, 0], [ 0, 0, 1]]) # around z m2 = np.array([[ 1, 0, 0], [ 0, c2,-s2], [ 0, s2, c2]]) # around x m3 = np.array([[ c3,-s3, 0], [ s3, c3, 0], [ 0, 0, 1]]) # around z M = np.dot(m3.T,np.dot(m2.T,m1.T)) return M healpy-1.8.1/healpy/zoomtool.py0000644000175000017500000004613412346125412016777 0ustar zoncazonca00000000000000# # This file is part of Healpy. # # Healpy is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # Healpy is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with Healpy; if not, write to the Free Software # Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA # # For more information about Healpy, see http://code.google.com/p/healpy # from . import projaxes as PA from . import rotator as R import numpy as np import matplotlib from ._healpy_pixel_lib import UNSEEN from . import pixelfunc pi = np.pi dtor = pi/180. def mollzoom(map=None,fig=None,rot=None,coord=None,unit='', xsize=800,title='Mollweide view',nest=False, min=None,max=None,flip='astro', remove_dip=False,remove_mono=False, gal_cut=0, format='%g',cmap=None, norm=None,hold=False,margins=None,sub=None): """Interactive mollweide plot with zoomed gnomview. Parameters: ----------- map : float, array-like shape (Npix,) An array containing the map, supports masked maps, see the `ma` function. if None, use map with inf value (white map), useful for overplotting fig : a figure number. Default: create a new figure rot : scalar or sequence, optional Describe the rotation to apply. In the form (lon, lat, psi) (unit: degrees) : the point at longitude *lon* and latitude *lat* will be at the center. An additional rotation of angle *psi* around this direction is applied. coord : sequence of character, optional Either one of 'G', 'E' or 'C' to describe the coordinate system of the map, or a sequence of 2 of these to rotate the map from the first to the second coordinate system. unit : str, optional A text describing the unit of the data. Default: '' xsize : int, optional The size of the image. Default: 800 title : str, optional The title of the plot. Default: 'Mollweide view' nest : bool, optional If True, ordering scheme is NESTED. Default: False (RING) min : float, optional The minimum range value max : float, optional The maximum range value flip : {'astro', 'geo'}, optional Defines the convention of projection : 'astro' (default, east towards left, west towards right) or 'geo' (east towards roght, west towards left) remove_dip : bool, optional If :const:`True`, remove the dipole+monopole remove_mono : bool, optional If :const:`True`, remove the monopole gal_cut : float, scalar, optional Symmetric galactic cut for the dipole/monopole fit. Removes points in latitude range [-gal_cut, +gal_cut] format : str, optional The format of the scale label. Default: '%g' """ import pylab # create the figure (if interactive, it will open the window now) f=pylab.figure(fig,figsize=(10.5,5.4)) extent = (0.02,0.25,0.56,0.72) # Starting to draw : turn interactive off wasinteractive = pylab.isinteractive() pylab.ioff() try: if map is None: map = np.zeros(12)+np.inf map = pixelfunc.ma_to_array(map) ax=PA.HpxMollweideAxes(f,extent,coord=coord,rot=rot, format=format,flipconv=flip) f.add_axes(ax) if remove_dip: map=pixelfunc.remove_dipole(map,gal_cut=gal_cut, nest=nest,copy=True, verbose=True) elif remove_mono: map=pixelfunc.remove_monopole(map,gal_cut=gal_cut,nest=nest, copy=True,verbose=True) ax.projmap(map,nest=nest,xsize=xsize,coord=coord,vmin=min,vmax=max, cmap=cmap,norm=norm) im = ax.get_images()[0] b = im.norm.inverse(np.linspace(0,1,im.cmap.N+1)) v = np.linspace(im.norm.vmin,im.norm.vmax,im.cmap.N) if matplotlib.__version__ >= '0.91.0': cb=f.colorbar(ax.get_images()[0],ax=ax, orientation='horizontal', shrink=0.5,aspect=25,ticks=PA.BoundaryLocator(), pad=0.05,fraction=0.1,boundaries=b,values=v) else: # for older matplotlib versions, no ax kwarg cb=f.colorbar(ax.get_images()[0],orientation='horizontal', shrink=0.5,aspect=25,ticks=PA.BoundaryLocator(), pad=0.05,fraction=0.1,boundaries=b,values=v) ax.set_title(title) ax.text(0.86,0.05,ax.proj.coordsysstr,fontsize=14, fontweight='bold',transform=ax.transAxes) cb.ax.text(1.05,0.30,unit,fontsize=14,fontweight='bold', transform=cb.ax.transAxes,ha='left',va='center') f.sca(ax) ## Gnomonic axes #extent = (0.02,0.25,0.56,0.72) g_xsize=600 g_reso = 1. extent = (0.60,0.04,0.38,0.94) g_ax=PA.HpxGnomonicAxes(f,extent,coord=coord,rot=rot, format=format,flipconv=flip) f.add_axes(g_ax) if remove_dip: map=pixelfunc.remove_dipole(map,gal_cut=gal_cut,nest=nest,copy=True) elif remove_mono: map=pixelfunc.remove_monopole(map,gal_cut=gal_cut,nest=nest,copy=True) g_ax.projmap(map,nest=nest,coord=coord,vmin=min,vmax=max, xsize=g_xsize,ysize=g_xsize,reso=g_reso,cmap=cmap,norm=norm) im = g_ax.get_images()[0] b = im.norm.inverse(np.linspace(0,1,im.cmap.N+1)) v = np.linspace(im.norm.vmin,im.norm.vmax,im.cmap.N) if matplotlib.__version__ >= '0.91.0': cb=f.colorbar(g_ax.get_images()[0],ax=g_ax, orientation='horizontal', shrink=0.5,aspect=25,ticks=PA.BoundaryLocator(), pad=0.08,fraction=0.1,boundaries=b,values=v) else: cb=f.colorbar(g_ax.get_images()[0],orientation='horizontal', shrink=0.5,aspect=25,ticks=PA.BoundaryLocator(), pad=0.08,fraction=0.1,boundaries=b,values=v) g_ax.set_title(title) g_ax.text(-0.07,0.02, "%g '/pix, %dx%d pix"%(g_ax.proj.arrayinfo['reso'], g_ax.proj.arrayinfo['xsize'], g_ax.proj.arrayinfo['ysize']), fontsize=12,verticalalignment='bottom', transform=g_ax.transAxes,rotation=90) g_ax.text(-0.07,0.8,g_ax.proj.coordsysstr,fontsize=14, fontweight='bold',rotation=90,transform=g_ax.transAxes) lon,lat = np.around(g_ax.proj.get_center(lonlat=True),g_ax._coordprec) g_ax.text(0.5,-0.03,'on (%g,%g)'%(lon,lat), verticalalignment='center', horizontalalignment='center', transform=g_ax.transAxes) cb.ax.text(1.05,0.30,unit,fontsize=14,fontweight='bold', transform=cb.ax.transAxes,ha='left',va='center') # Add graticule info axes grat_ax = pylab.axes([0.25, 0.02, 0.22,0.25]) grat_ax.axis('off') # Add help text help_ax = pylab.axes([0.02,0.02,0.22,0.25]) help_ax.axis('off') t = help_ax.transAxes help_ax.text(0.1, 0.8, 'r/t .... zoom out/in',transform=t,va='baseline') help_ax.text(0.1, 0.65,'p/v .... print coord/val',transform=t,va='baseline') help_ax.text(0.1, 0.5, 'c ...... go to center',transform=t,va='baseline') help_ax.text(0.1, 0.35,'f ...... next color scale',transform=t,va='baseline') help_ax.text(0.1, 0.2, 'k ...... save current scale',transform=t, va='baseline') help_ax.text(0.1, 0.05,'g ...... toggle graticule',transform=t,va='baseline') f.sca(g_ax) # Set up the zoom capability zt=ZoomTool(map,fig=f.number,nest=nest,cmap=cmap,norm=norm,coord=coord) finally: pylab.draw() if wasinteractive: pylab.ion() def set_g_clim(vmin,vmax): """Set min/max value of the gnomview part of a mollzoom. """ import pylab f=pylab.gcf() if not hasattr(f,'zoomtool'): raise TypeError('The current figure has no zoomtool') f.zoomtool.save_min = vmin f.zoomtool.save_max = vmax f.zoomtool._range_status = 2 f.zoomtool.draw_gnom() class ZoomTool(object): """A class providing zoom capability to a figure containing a Mollweide and a Gnomonic axis. """ def __init__(self,m,fig=None,nest=False,cmap=None,norm=None, coord=None): """m: the map to be zoomed (already plotted in Mollweide view) fig: the figure to instrument (None->gcf()) """ import pylab self.reso_list = [0.05,0.1,0.2,0.3,0.5,0.75,1.,1.5,3.,5.,10.,15., 30.,45.,60.] self._map = m self._nest = nest self._cmap = cmap self._norm = norm self._coord = coord self._range_status = 0 #0:normal, 1:global map min,max, 2: saved self.save_min = self.save_max = None self._graton = False # find min, max of map if isinstance(m, dict): if len(m) == 0: self._mapmin, self._mapmax = -1., 1. else: self._mapmin,self._mapmax = min(m.values()), max(m.values()) else: mgood = m[m!=UNSEEN] if mgood.size == 0: self._mapmin, self._mapmax = -1., 1. else: self._mapmin,self._mapmax = mgood.min(),mgood.max() del mgood if fig is None: f=pylab.gcf() else: f=pylab.figure(fig) self.f = f f.zoomtool = self (self._moll_ax, self._moll_cb_ax, self._gnom_ax, self._gnom_cb_ax) = f.get_axes()[:4] self._grat_ax = f.get_axes()[4] self._text_reso, self._text_coord, self._text_loc = self._gnom_ax.texts self._xsize = self._gnom_ax.proj.arrayinfo['xsize'] self._ysize = self._gnom_ax.proj.arrayinfo['ysize'] try: self._reso_idx = self.reso_list.index(self._gnom_ax.proj._arrayinfo['reso']) except ValueError as e: raise ValueError('Resolution not in %s'%self.reso_list) self.zoomcenter, = self._moll_ax.plot([0],[0],'ok', mew=1,ms=15,alpha=0.1) self.zoomcenter2, = self._moll_ax.plot([0], [0], 'xr', ms=15, alpha=0.5, mew=3) self._text_range = self._gnom_ax.text(-0.4, -0.2, 'scale mode: loc', transform= self._gnom_ax.transAxes, va='baseline', ha='left') self.draw_gnom(0,0) self._connected = False self.connect_callbacks() def _zoom_on_click(self, ev): import pylab try: ax = ev.inaxes lon,lat = ax.get_lonlat(ev.xdata,ev.ydata) if np.isnan(lon) or np.isnan(lat): raise ValueError('invalid position') val = ax.get_value(ev.xdata,ev.ydata) self.lastval = val self._move_zoom_center(lon,lat) self.draw_gnom(lon,lat) except Exception as s: self._move_zoom_center(0,0,False) pylab.draw_if_interactive() #print s return def _reso_on_key(self, ev): if ev.key == 'r': self._decrease_reso() elif ev.key == 't': self._increase_reso() elif ev.key == 'p': print('lon,lat = %.17g,%.17g'%(self.lon,self.lat)) elif ev.key == 'c': self._move_zoom_center(0,0) self.draw_gnom(0,0) elif ev.key == 'v': print('val = %.17g'%(self.lastval)) elif ev.key == 'f': self._range_status += 1 self._range_status %= 3 self.draw_gnom() elif ev.key == 'k': self.save_min = self._gnom_ax.images[0].norm.vmin self.save_max = self._gnom_ax.images[0].norm.vmax elif ev.key == 'g': if hasattr(self,'_graton') and self._graton == True: self._gnom_ax.delgraticules() self._moll_ax.delgraticules() self._graton = False else: (self._g_dpar, self._g_dmer) = self._gnom_ax.graticule(local=False, verbose=False) (self._m_dpar, self._m_dmer) = self._moll_ax.graticule(verbose=False) self._graton = True self.draw_gnom() def _update_grat_info(self): self._grat_ax.cla() self._grat_ax.axis('off') if self._graton: a = self._grat_ax t = a.transAxes a.text(0.1, 0.8, 'moll. grat.:',transform=t,weight='bold') vdeg = np.floor(np.around(self._m_dpar/dtor,10)) varcmin = (self._m_dpar/dtor-vdeg)*60. a.text(0.1, 0.65, " -par: %d d %.2f '"%(vdeg,varcmin), transform=t) vdeg = np.floor(np.around(self._m_dmer/dtor,10)) varcmin = (self._m_dmer/dtor-vdeg)*60. a.text(0.1, 0.5, " -mer: %d d %.2f '"%(vdeg,varcmin), transform=t) a.text(0.1, 0.35, 'gnom. grat.:',transform=t,weight='bold') vdeg = np.floor(np.around(self._g_dpar/dtor,10)) varcmin = (self._g_dpar/dtor-vdeg)*60. a.text(0.1, 0.2, " -par: %d d %.2f '"%(vdeg,varcmin), transform=t) vdeg = np.floor(np.around(self._g_dmer/dtor,10)) varcmin = (self._g_dmer/dtor-vdeg)*60. a.text(0.1, 0.05, " -mer: %d d %.2f '"%(vdeg,varcmin), transform=t) def _increase_reso(self): if self._reso_idx > 0: self._reso_idx -= 1 self.draw_gnom(self.lon,self.lat) def _decrease_reso(self): if self._reso_idx < len(self.reso_list)-1: self._reso_idx += 1 self.draw_gnom(self.lon,self.lat) def get_reso(self): return self.reso_list[self._reso_idx] def connect_callbacks(self): if not self._connected: self._callbacks_id = [] cid = self.f.canvas.mpl_connect('button_press_event', self._zoom_on_click) self._callbacks_id.append(cid) cid = self.f.canvas.mpl_connect('key_press_event', self._reso_on_key) self._callbacks_id.append(cid) self._connected = True def disconnect_callbacks(self): if self._connected: for cid in self._callbacks_id: self.figure.canvas.mpl_disconnect(cid) def _move_zoom_center(self, lon, lat, visible=True): # Move the zoom center marker. if self.zoomcenter: x,y = self._moll_ax.proj.ang2xy(lon,lat,lonlat=True) self.zoomcenter.set_xdata([x]) self.zoomcenter.set_ydata([y]) self.zoomcenter.set_visible(visible) if self.zoomcenter2: x,y = self._moll_ax.proj.ang2xy(lon,lat,lonlat=True) self.zoomcenter2.set_xdata([x]) self.zoomcenter2.set_ydata([y]) self.zoomcenter2.set_visible(visible) def draw_gnom(self,lon=None,lat=None): import pylab wasinteractive = pylab.isinteractive() pylab.ioff() try: # modify rot of the gnom_ax if lon is None: lon = self._lon else: self._lon = lon if lat is None: lat = self._lat else: self._lat = lat self._gnom_ax.proj.rotator._rots.pop() self._gnom_ax.proj.rotator._rots.append(R.normalise_rot((lon,lat),deg=True)) self._gnom_ax.proj.rotator._update_matrix() if self._range_status == 0: vmin=vmax = None elif self._range_status == 1: vmin,vmax = self._mapmin,self._mapmax elif self._range_status == 2: vmin,vmax = self.save_min, self.save_max self._gnom_ax.images.pop() self._gnom_ax.projmap(self._map,nest=self._nest,coord=self._coord, vmin=vmin,vmax=vmax, xsize=self._xsize,ysize=self._ysize, reso=self.get_reso(), cmap=self._cmap, norm=self._norm) if hasattr(self._gnom_ax, '_scatter_data'): l = [x for x in self._gnom_ax._scatter_data] #print l for sd in l: s, input_data = sd #print input_data self._gnom_ax.collections.remove(s) self._gnom_ax._scatter_data.remove(sd) theta, phi, args, kwds = input_data self._gnom_ax.projscatter(theta, phi = phi, *args, **kwds) del l if self._graton: self._gnom_ax.delgraticules() (self._g_dpar, self._g_dmer) = self._gnom_ax.graticule(local=False, verbose=False) self._gnom_cb_ax.cla() im = self._gnom_ax.images[0] if matplotlib.__version__ >= '0.91.0': cb=self.f.colorbar(im,ax=self._gnom_ax, cax=self._gnom_cb_ax,orientation='horizontal', ticks=PA.BoundaryLocator()) else: cb=self.f.colorbar(im,cax=self._gnom_cb_ax, orientation='horizontal',ticks=PA.BoundaryLocator()) lon,lat = np.around(self._gnom_ax.proj.get_center(lonlat=True), self._gnom_ax._coordprec) self._text_loc.set_text('on (%g,%g)'%(lon,lat)) reso = self._gnom_ax.proj.arrayinfo['reso'] xsize = self._gnom_ax.proj.arrayinfo['xsize'] ysize = self._gnom_ax.proj.arrayinfo['ysize'] self._text_reso.set_text("%g '/pix, %dx%d pix"% (reso, xsize, ysize)) mode = ['loc','map','sav'][self._range_status] self._text_range.set_text('scale mode: %s'%mode) self.lon,self.lat = lon,lat self._update_grat_info() except Exception as e: pass #print e finally: if wasinteractive: pylab.ion() pylab.draw() pylab.show() healpy-1.8.1/healpy/test/0000755000175000017500000000000012351601662015514 5ustar zoncazonca00000000000000healpy-1.8.1/healpy/test/test_sphtfunc.py0000644000175000017500000001443512346125412020764 0ustar zoncazonca00000000000000import pyfits import os import numpy as np from copy import deepcopy from itertools import chain import unittest import healpy as hp import warnings # disable new order warnings in tests warnings.filterwarnings('ignore') class TestSphtFunc(unittest.TestCase): def setUp(self): self.lmax = 64 self.path = os.path.dirname( os.path.realpath( __file__ ) ) self.map1 = [hp.ma(m) for m in hp.read_map(os.path.join(self.path, 'data', 'wmap_band_iqumap_r9_7yr_W_v4_udgraded32.fits'), (0,1,2))] self.map2 = [hp.ma(m) for m in hp.read_map(os.path.join(self.path, 'data', 'wmap_band_iqumap_r9_7yr_V_v4_udgraded32.fits'), (0,1,2))] self.mask = hp.read_map(os.path.join(self.path, 'data', 'wmap_temperature_analysis_mask_r9_7yr_v4_udgraded32.fits')).astype(np.bool) for m in chain(self.map1, self.map2): m.mask = np.logical_not(self.mask) self.cla = hp.read_cl(os.path.join(self.path, 'data', 'cl_wmap_band_iqumap_r9_7yr_W_v4_udgraded32_II_lmax64_rmmono_3iter.fits')) self.cl_fortran_nomask = hp.read_cl(os.path.join(self.path, 'data', 'cl_wmap_band_iqumap_r9_7yr_W_v4_udgraded32_II_lmax64_rmmono_3iter_nomask.fits')) cls_file = pyfits.open(os.path.join(self.path, 'data', 'cl_wmap_band_iqumap_r9_7yr_W_v4_udgraded32_IQU_lmax64_rmmono_3iter.fits')) # fix for pyfits to read the file with duplicate column names for i in range(2, 6): cls_file[1].header['TTYPE%d' % i] += '-%d' % i cls = cls_file[1].data # order of HEALPIX is TB, EB while in healpy is EB, TB self.cliqu = [np.array(cls.field(i)) for i in (0,1,2,3,5,4)] nside = 32 lmax = 64 fwhm_deg = 7. seed = 12345 np.random.seed(seed) self.mapiqu = hp.synfast(self.cliqu, nside, lmax=lmax, pixwin=False, fwhm=np.radians(fwhm_deg), new=False) def test_anafast(self): cl = hp.anafast(hp.remove_monopole(self.map1[0].filled()), lmax = self.lmax) self.assertEqual(len(cl), 65) np.testing.assert_array_almost_equal(cl, self.cla, decimal=8) def test_anafast_nomask(self): cl = hp.anafast(hp.remove_monopole(self.map1[0].data), lmax = self.lmax) self.assertEqual(len(cl), 65) np.testing.assert_array_almost_equal(cl, self.cl_fortran_nomask, decimal=8) def test_anafast_iqu(self): self.map1[0] = hp.remove_monopole(self.map1[0]) cl = hp.anafast(self.map1, lmax = self.lmax) self.assertEqual(len(cl[0]), 65) self.assertEqual(len(cl), 6) for i in range(6): np.testing.assert_array_almost_equal(cl[i], self.cliqu[i], decimal=8) def test_anafast_xspectra(self): cl = hp.anafast(hp.remove_monopole(self.map1[0]), hp.remove_monopole(self.map2[0]), lmax = self.lmax) self.assertEqual(len(cl), self.lmax+1) clx = hp.read_cl(os.path.join(self.path, 'data', 'cl_wmap_band_iqumap_r9_7yr_WVxspec_v4_udgraded32_II_lmax64_rmmono_3iter.fits')) np.testing.assert_array_almost_equal(cl, clx, decimal=8) def test_synfast(self): nside = 32 lmax = 64 fwhm_deg = 7. seed = 12345 np.random.seed(seed) map_pregen = hp.read_map(os.path.join(self.path, 'data', 'map_synfast_seed%d.fits' % seed), (0,1,2)) sim_map = hp.synfast(self.cliqu, nside, lmax = lmax, pixwin=False, fwhm=np.radians(fwhm_deg), new=False, pol=True) np.testing.assert_array_almost_equal(sim_map, map_pregen, decimal=8) def test_smoothing_notmasked(self): smoothed = hp.smoothing([m.data for m in self.map1], fwhm=np.radians(10), lmax=self.lmax) smoothed_f90 = hp.read_map(os.path.join(self.path, 'data', 'wmap_band_iqumap_r9_7yr_W_v4_udgraded32_smoothed10deg_fortran.fits'), (0,1,2)) np.testing.assert_array_almost_equal(smoothed, smoothed_f90, decimal=6) def test_smoothing_masked(self): smoothed = hp.smoothing(self.map1, fwhm=np.radians(10), lmax=self.lmax) smoothed_f90 = hp.ma(hp.read_map(os.path.join(self.path, 'data', 'wmap_band_iqumap_r9_7yr_W_v4_udgraded32_masked_smoothed10deg_fortran.fits'), (0,1,2))) # fortran does not restore the mask for mm in smoothed_f90: mm.mask = smoothed[0].mask for i in range(3): np.testing.assert_array_almost_equal(smoothed[i].filled(), smoothed_f90[i].filled(), decimal=6) def test_gauss_beam(self): idl_gauss_beam = np.array(pyfits.open(os.path.join(self.path, 'data', 'gaussbeam_10arcmin_lmax512_pol.fits'))[0].data).T gauss_beam = hp.gauss_beam(np.radians(10./60.), lmax=512, pol=True) np.testing.assert_allclose(idl_gauss_beam, gauss_beam) def test_map2alm(self): nside = 32 lmax = 64 fwhm_deg = 7. seed = 12345 np.random.seed(seed) orig = hp.synfast(self.cla, nside, lmax=lmax, pixwin=False, fwhm=np.radians(fwhm_deg), new=False) tmp = np.empty(orig.size * 2) tmp[::2] = orig maps = [orig, orig.astype(np.float32), tmp[::2]] for input in maps: alm = hp.map2alm(input, iter=10) output = hp.alm2map(alm, nside) np.testing.assert_allclose(input, output, atol=1e-4) def test_map2alm_pol(self): tmp = [np.empty(o.size*2) for o in self.mapiqu] for t, o in zip(tmp, self.mapiqu): t[::2] = o maps = [self.mapiqu, [o.astype(np.float32) for o in self.mapiqu], [t[::2] for t in tmp]] for input in maps: alm = hp.map2alm(input, iter=10) output = hp.alm2map(alm, 32) for i, o in zip(input, output): np.testing.assert_allclose(i, o, atol=1e-4) def test_rotate_alm(self): almigc = hp.map2alm(self.mapiqu) alms = [almigc[0], almigc[0:2], almigc, np.vstack(almigc)] for i in alms: o = deepcopy(i) hp.rotate_alm(o, 0.1, 0.2, 0.3) hp.rotate_alm(o, -0.3, -0.2, -0.1) np.testing.assert_allclose(i, o, rtol=1e-6) if __name__ == '__main__': unittest.main() healpy-1.8.1/healpy/test/test_query_disc.py0000644000175000017500000000644612346125412021304 0ustar zoncazonca00000000000000import unittest import numpy as np from .. import query_disc, boundaries, nside2npix class TestQueryDisc(unittest.TestCase): def setUp(self): self.NSIDE = 8 self.vec = np.array([ 0.17101007, 0.03015369, 0.98480775]) self.radius = np.radians(6) def test_not_inclusive(self): #HIDL> query_disc, 8, [ 0.17101007, 0.03015369, 0.98480775],6,listpix,/DEG,NESTED=0 #HIDL> print,listpix # 4 np.testing.assert_array_equal( query_disc(self.NSIDE, self.vec, self.radius, inclusive=False), np.array([4]) ) def test_inclusive(self): #HIDL> query_disc, 8, [ 0.17101007, 0.03015369, 0.98480775],6,listpix,/DEG,NESTED=0,/inclusive #HIDL> print,listpix # 0 3 4 5 11 12 13 23 np.testing.assert_array_equal( query_disc(self.NSIDE, self.vec, self.radius, inclusive=True), np.array([ 0, 3, 4, 5, 11, 12, 13, 23 ]) ) def test_boundaries(self): nside = 2 corners = boundaries(nside, 5) corners_precomp = np.array( [[ 2.44708573e-17, 5.27046277e-01, 3.60797400e-01, 4.56383842e-17], [ 3.99652627e-01, 5.27046277e-01, 8.71041977e-01, 7.45355992e-01], [ 9.16666667e-01, 6.66666667e-01, 3.33333333e-01, 6.66666667e-01]]) np.testing.assert_array_almost_equal(corners, corners_precomp, decimal=8) def test_boundaries_phi_theta(self): nside = 2 corners = boundaries(nside, np.array([5,5])) corners_precomp = np.array( [[[ 2.44708573e-17, 5.27046277e-01, 3.60797400e-01, 4.56383842e-17], [ 3.99652627e-01, 5.27046277e-01, 8.71041977e-01, 7.45355992e-01], [ 9.16666667e-01, 6.66666667e-01, 3.33333333e-01, 6.66666667e-01]], [[ 2.44708573e-17, 5.27046277e-01, 3.60797400e-01, 4.56383842e-17], [ 3.99652627e-01, 5.27046277e-01, 8.71041977e-01, 7.45355992e-01], [ 9.16666667e-01, 6.66666667e-01, 3.33333333e-01, 6.66666667e-01]]] ) np.testing.assert_array_almost_equal(corners, corners_precomp, decimal=8) def test_buffer_mode(self) : # allocate something manifestly too short, should raise a value error buff = np.empty(0, dtype=np.int64) self.assertRaises(ValueError, query_disc, self.NSIDE, self.vec, self.radius, inclusive=True, buff=buff) # allocate something of wrong type, should raise a value error buff = np.empty(nside2npix(self.NSIDE), dtype=np.float64) self.assertRaises(ValueError, query_disc, self.NSIDE, self.vec, self.radius, inclusive=True, buff=buff) # allocate something acceptable, should succeed and return a subview buff = np.empty(nside2npix(self.NSIDE), dtype=np.int64) result = query_disc(self.NSIDE, self.vec, self.radius, inclusive=True, buff=buff) assert result.base is buff np.testing.assert_array_equal( result, np.array([ 0, 3, 4, 5, 11, 12, 13, 23 ]) ) healpy-1.8.1/healpy/test/__init__.py0000650000175000017530000000000012076101224017742 0ustar zoncaplanck00000000000000healpy-1.8.1/healpy/test/test_pixelfunc.py0000644000175000017500000001073612351601276021132 0ustar zoncazonca00000000000000from ..pixelfunc import * from .._query_disc import boundaries from .._pixelfunc import ringinfo, pix2ring import numpy as np import unittest class TestPixelFunc(unittest.TestCase): def setUp(self): # data fixture self.theta0 = [ 1.52911759, 0.78550497, 1.57079633, 0.05103658, 3.09055608] self.phi0 = [ 0. , 0.78539816, 1.61988371, 0.78539816, 0.78539816] def test_nside2npix(self): self.assertEqual(nside2npix(512), 3145728) self.assertEqual(nside2npix(1024), 12582912) def test_nside2resol(self): self.assertAlmostEqual(nside2resol(512,arcmin=True), 6.87097282363) self.assertAlmostEqual(nside2resol(1024,arcmin=True), 3.43548641181) def test_nside2pixarea(self): self.assertAlmostEqual(nside2pixarea(512), 3.9947416351188569e-06) def test_ang2pix_ring(self): # ensure nside = 1 << 23 is correctly calculated # by comparing the original theta phi are restored. # NOTE: nside needs to be sufficiently large! id = ang2pix(1048576 * 8, self.theta0, self.phi0, nest=False) theta1, phi1 = pix2ang(1048576 * 8, id, nest=False) np.testing.assert_array_almost_equal(theta1, self.theta0) np.testing.assert_array_almost_equal(phi1, self.phi0) def test_ang2pix_ring_outofrange(self): # Healpy_Base2 works up to nside = 2**29. # Check that a ValueError is raised for nside = 2**30. self.assertRaises( ValueError, ang2pix, 1<<30, self.theta0, self.phi0, nest=False) def test_ang2pix_nest(self): # ensure nside = 1 << 23 is correctly calculated # by comparing the original theta phi are restored. # NOTE: nside needs to be sufficiently large! # NOTE: with Healpy_Base this will fail because nside # is limited to 1 << 13 with Healpy_Base. id = ang2pix(1048576 * 8, self.theta0, self.phi0, nest=True) theta1, phi1 = pix2ang(1048576 * 8, id, nest=True) np.testing.assert_array_almost_equal(theta1, self.theta0) np.testing.assert_array_almost_equal(phi1, self.phi0) self.assertTrue(np.allclose(theta1, self.theta0)) self.assertTrue(np.allclose(phi1, self.phi0)) def test_ang2pix_nest_outofrange_doesntcrash(self): # Healpy_Base2 works up to nside = 2**29. # Check that a ValueError is raised for nside = 2**30. self.assertRaises( ValueError, ang2pix, 1<<30, self.theta0, self.phi0, nest=False) def test_ang2pix_negative_theta(self): self.assertRaises(AssertionError, ang2pix, 32, -1, 0) def test_fit_dipole(self): nside = 32 npix = nside2npix(nside) d = [0.3, 0.5, 0.2] vec = np.transpose(pix2vec(nside, np.arange(npix))) signal = vec.dot(d) mono, dipole = fit_dipole(signal) self.assertAlmostEqual(mono, 0.) self.assertAlmostEqual(d[0], dipole[0]) self.assertAlmostEqual(d[1], dipole[1]) self.assertAlmostEqual(d[2], dipole[2]) def test_boundaries(self): """Test whether the boundary shapes look sane""" for lgNside in range(1, 5): nside = 1<€Ñ©?ïô¸G_^ ?ïô.Þéû?ïó¢E}?ïó|—;?ïò„»;„?ïñé]°‰Ó?ïñP¤%3?ïð³‚Ä‚?ïðÏ?-?ïïpíE!?ïîÊÝÓ®?ïî!ž¶1r?ïíu2…Ñ;?ïìŘ©Yô?ïìÑUe‰?ïë\Ü¿€È?ïꣻ+N?ïéçl¨×g?ïé'ñ—éò?ïèeJ$ºH?ïçŸv‰’?ïæÖw­f?ïæ KÉ:3?ïå:õXœ?ïähs<œ?ïã’Ædƒó?ïâ¹îÖŠ?ïáÝìÓÈ?ïàþÀ›ù…?ïàjtÖ?ïß6êžðw?ïÞNAah$?ïÝbox?ïÜssÄ^Ï?ïÛOòé?ïÚŒÕÂ?ïÙ“´Cƒ?ïØ—óÚÁC?ï×™0“Íõ?ïÖ—F+˜l?ïÕ’4ï?6?ïÔ‰ý,Ð|?ïÓ~Ÿ3IÓ?ïÒpR˜?ïÑ^qÛ—N?ïÐI£ g?ïÏ1¯rÃ+?ïΗ'R?ïÌøZ’Uà?ïËÖú Sô?ïʲuâ¿¥?ïÉŠÎuúQ?ïÈ`S*?ïÇ2,?ïÆ@0?ïÄÌÖùE?ïÕ„lÿ?ïÂ[¹™?ïÁ|>Æ?ï¿ÜÇXÏA?リòi|Ú?ï½QýÐÂ+?ï¼éð.Ô?ﺺ·*>H?ï¹jeâWž?ï¸ö|Í_?ï¶Ài^ÝT?ïµf¾î°U?ï´ ÷“Z?ﲪ´Øê?ï±G¼¦?ï¯àøãX?ï®wÁ#ÿ?ï­ o[Ù?﫜$¦*?ïª)|î< ?勉Ý&4¦?ï§;$;Ü2?勵RŸg£?ï¤@hÁô|?gˆ›?ï¡9N 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NAXIS1 = 15 / width of table in characters NAXIS2 = 65 / number of rows in table PCOUNT = 0 / no group parameters (required keyword) GCOUNT = 1 / one data group (required keyword) TFIELDS = 1 / number of fields in each row COMMENT ----------------------------------------------- COMMENT Map Analysis Specific Keywords COMMENT ----------------------------------------------- EXTNAME = 'ANALYSED AUTO POWER SPECTRUM' COMMENT CREATOR = 'ANAFAST ' / Software creating the FITS file VERSION = '3.11 ' / Version of the simulation software COMMENT MAX-LPOL= 64 / Maximum Legendre order L COMMENT POLAR = F / Polarisation included (True/False) BCROSS = F / Magnetic cross terms included (True/False) COMMENT NSIDE = 32 / Resolution Parameter of Input Map COORDSYS= 'unknown ' / Input Map Coordinate system COMMENT G = Galactic, E = ecliptic, C = celestial = equatorial COMMENT TBCOL1 = 1 / beginning column of field 1 TFORM1 = 'E15.7 ' TTYPE1 = 'TEMPERATURE' / Temperature C(l) TUNIT1 = '^2 ' / square of map units COMMENT CUT-SKY = 0.000000000000E+00 / [deg] Symmetric Cut Sky NITERALM= 3 / Number of iterations for a_lms extraction LREGRESS= 1 / Regression of low multipoles (0/1/2) NMAPS_IN= 1 / Number of maps (co-)analysed (1/2) COMMENT HISTORY Input Map = wmap_band_iqumap_r9_7yr_W_v4_udgraded32_masked.fits END 3.3414573E-11 3.3517558E-06 4.8989430E-05 1.0169477E-04 1.2062433E-04 1.1325596E-04 4.7197471E-05 4.6721838E-05 3.1373249E-05 2.9179017E-05 1.6283797E-05 2.8455279E-05 1.5565542E-05 1.7469347E-05 1.7716973E-05 1.2910575E-05 1.2409597E-05 1.1831381E-05 6.3309044E-06 9.5228725E-06 5.5759465E-06 5.0533667E-06 4.0194614E-06 4.6285672E-06 5.7274942E-06 4.6215828E-06 5.1510547E-06 5.0876070E-06 4.6781470E-06 4.5110633E-06 3.7194425E-06 4.3340710E-06 5.3396429E-06 3.4312413E-06 3.6795705E-06 2.3858963E-06 3.5362266E-06 2.5809411E-06 3.5526471E-06 3.5767098E-06 3.3679785E-06 3.5763799E-06 3.6576841E-06 3.3139222E-06 2.2850354E-06 2.2602651E-06 2.4078142E-06 2.5892639E-06 1.8113082E-06 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zoncaplanck00000000000000SIMPLE = T / file does conform to FITS standard BITPIX = 32 / number of bits per data pixel NAXIS = 0 / number of data axes EXTEND = T / FITS dataset may contain extensions COMMENT FITS (Flexible Image Transport System) format is defined in 'AstronomyCOMMENT and Astrophysics', volume 376, page 359; bibcode: 2001A&A...376..359H DATE = '2014-01-14T18:50:12' / file creation date (YYYY-MM-DDThh:mm:ss UT) END XTENSION= 'TABLE ' / ASCII table extension BITPIX = 8 / 8-bit ASCII characters NAXIS = 2 / 2-dimensional ASCII table NAXIS1 = 95 / width of table in characters NAXIS2 = 65 / number of rows in table PCOUNT = 0 / no group parameters (required keyword) GCOUNT = 1 / one data group (required keyword) TFIELDS = 6 / number of fields in each row COMMENT ----------------------------------------------- COMMENT Map Analysis Specific Keywords COMMENT ----------------------------------------------- EXTNAME = 'ANALYSED AUTO POWER SPECTRUM' COMMENT CREATOR = 'ANAFAST ' / Software creating the FITS file VERSION = '3.11 ' / Version of the simulation software COMMENT MAX-LPOL= 64 / Maximum Legendre order L COMMENT POLAR = T / Polarisation included (True/False) BCROSS = T / Magnetic cross terms included (True/False) COMMENT NSIDE = 32 / Resolution Parameter of Input Map COORDSYS= 'unknown ' / Input Map Coordinate system COMMENT G = Galactic, E = ecliptic, C = celestial = equatorial COMMENT TBCOL1 = 1 / beginning column of field 1 TFORM1 = 'E15.7 ' TTYPE1 = 'TEMPERATURE' / Temperature C(l) TUNIT1 = '^2 ' / square of map units COMMENT TBCOL2 = 17 / beginning column of field 2 TFORM2 = 'E15.7 ' TTYPE2 = 'GRADIENT' / Gradient (=ELECTRIC) polarisation C(l) TUNIT2 = '^2 ' / power spectrum units COMMENT TBCOL3 = 33 / beginning column of field 3 TFORM3 = 'E15.7 ' TTYPE3 = 'CURL ' / Curl (=MAGNETIC) polarisation C(l) TUNIT3 = '^2 ' / power spectrum units COMMENT TBCOL4 = 49 / beginning column of field 4 TFORM4 = 'E15.7 ' TTYPE4 = 'G-T ' / Gradient-Temperature (=CROSS) terms TUNIT4 = '^2 ' / power spectrum units COMMENT TBCOL5 = 65 / beginning column of field 5 TFORM5 = 'E15.7 ' TTYPE5 = 'C-T ' / Curl-Temperature terms TUNIT5 = '^2 ' / power spectrum units COMMENT TBCOL6 = 81 / beginning column of field 6 TFORM6 = 'E15.7 ' TTYPE6 = 'C-G ' / Curl-Gradient terms TUNIT6 = '^2 ' / power spectrum units COMMENT COMMENT The polarisation power spectra have the same definition as in CMBFAST COMMENT CUT-SKY = 0.000000000000E+00 / [deg] Symmetric Cut Sky NITERALM= 3 / Number of iterations for a_lms extraction LREGRESS= 1 / Regression of low multipoles (0/1/2) NMAPS_IN= 1 / Number of maps (co-)analysed (1/2) COMMENT HISTORY Input Map = wmap_band_iqumap_r9_7yr_W_v4_udgraded32_masked.fits END 3.3414573E-11 0.0000000E+00 0.0000000E+00 0.0000000E+00 0.0000000E+00 0.0000000E+00 3.3517558E-06 0.0000000E+00 0.0000000E+00 0.0000000E+00 0.0000000E+00 0.0000000E+00 4.8989430E-05 1.1326727E-05 1.5167591E-06 1.8729554E-05 -5.0660765E-07 -1.2990840E-06 1.0169477E-04 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S<ìq»)É–¼ Ÿt»àº;“5:™8,:Áû;Ësß¼± :a1 <$ôT»ãdð;]’ »¯îZ:øù‚»¶7»›3 ºÞ¿pºV¡;:½¡;þ«ºc¦—»._°»´p;Ê3/»£ª\;ByŠ»XyN;íÜ9øO»Àwcºíª<zÏhealpy-1.8.1/healpy/test/data/wmap_band_iqumap_r9_7yr_W_v4_udgraded32_masked.fits0000654000175000017530000045760012276746731030455 0ustar zoncaplanck00000000000000SIMPLE = T / conforms to FITS standard BITPIX = 8 / array data type NAXIS = 0 / number of array dimensions EXTEND = T END XTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / array data type NAXIS = 2 / number of array dimensions NAXIS1 = 12288 / length of dimension 1 NAXIS2 = 12 / length of dimension 2 PCOUNT = 0 / number of group parameters GCOUNT = 1 / number of groups TFIELDS = 3 / number of table fields TTYPE1 = 'I_STOKES' TFORM1 = '1024E ' TTYPE2 = 'Q_STOKES' TFORM2 = '1024E ' TTYPE3 = 'U_STOKES' TFORM3 = '1024E ' PIXTYPE = 'HEALPIX ' / HEALPIX pixelisation ORDERING= 'RING ' / Pixel ordering scheme, either RING or NESTED EXTNAME = 'xtension' / name of this binary table extension NSIDE = 32 / 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keyword) TFIELDS = 1 / number of fields in each row COMMENT ----------------------------------------------- COMMENT Map Analysis Specific Keywords COMMENT ----------------------------------------------- EXTNAME = 'ANALYSED CROSS POWER SPECTRUM' COMMENT CREATOR = 'ANAFAST ' / Software creating the FITS file VERSION = '3.11 ' / Version of the simulation software COMMENT MAX-LPOL= 64 / Maximum Legendre order L COMMENT POLAR = F / Polarisation included (True/False) BCROSS = F / Magnetic cross terms included (True/False) COMMENT NSIDE = 32 / Resolution Parameter of Input Map COORDSYS= 'unknown ' / Input Map Coordinate system COMMENT G = Galactic, E = ecliptic, C = celestial = equatorial COMMENT TBCOL1 = 1 / beginning column of field 1 TFORM1 = 'E15.7 ' TTYPE1 = 'TEMPERATURE' / Temperature C(l) TUNIT1 = '^2 ' / square of map units COMMENT CUT-SKY = 0.000000000000E+00 / [deg] Symmetric Cut Sky NITERALM= 3 / Number of iterations for a_lms extraction LREGRESS= 1 / Regression of low multipoles (0/1/2) NMAPS_IN= 2 / Number of maps (co-)analysed (1/2) COMMENT HISTORY Input Map1 = wmap_band_iqumap_r9_7yr_W_v4_udgraded32_masked.fits HISTORY Input Map2 = wmap_band_iqumap_r9_7yr_V_v4_udgraded32_masked.fits END 3.8113821E-11 3.9654506E-06 4.5803368E-05 9.6292591E-05 1.1860339E-04 1.1168914E-04 4.4884171E-05 4.6054989E-05 3.0653522E-05 2.9247529E-05 1.6336451E-05 2.8232542E-05 1.5068387E-05 1.7006696E-05 1.7160228E-05 1.2958244E-05 1.2032266E-05 1.1709052E-05 6.1748001E-06 9.3632098E-06 5.5478167E-06 4.8620650E-06 3.9769957E-06 4.6241457E-06 5.6935928E-06 4.4905291E-06 4.9183400E-06 4.9639752E-06 4.5160127E-06 4.5209140E-06 3.6474119E-06 4.2834340E-06 5.3268277E-06 3.3172198E-06 3.6983699E-06 2.3960129E-06 3.4645136E-06 2.5494594E-06 3.4671673E-06 3.5282451E-06 3.3109943E-06 3.5375799E-06 3.5123887E-06 3.3512979E-06 2.2368963E-06 2.2496997E-06 2.3724469E-06 2.5460008E-06 1.7534456E-06 2.3832351E-06 2.0410664E-06 2.1037938E-06 2.1080539E-06 1.6286394E-06 1.9294610E-06 2.0597274E-06 1.6830304E-06 1.6431676E-06 1.6247285E-06 1.6202574E-06 1.7479871E-06 1.5648384E-06 1.5660847E-06 1.2259272E-06 1.1410553E-06 healpy-1.8.1/healpy/test/data/wmap_band_iqumap_r9_7yr_W_v4_udgraded32.fits0000654000175000017530000045760012276746731027131 0ustar zoncaplanck00000000000000SIMPLE = T / conforms to FITS standard BITPIX = 8 / array data type NAXIS = 0 / number of array dimensions EXTEND = T END XTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / array data type NAXIS = 2 / number of array dimensions NAXIS1 = 12288 / length of dimension 1 NAXIS2 = 12 / length of dimension 2 PCOUNT = 0 / number of group parameters GCOUNT = 1 / number of groups TFIELDS = 3 / number of table fields TTYPE1 = 'I_STOKES' TFORM1 = '1024E ' TTYPE2 = 'Q_STOKES' TFORM2 = '1024E ' TTYPE3 = 'U_STOKES' TFORM3 = '1024E ' PIXTYPE = 'HEALPIX ' / HEALPIX pixelisation ORDERING= 'RING ' / Pixel ordering scheme, either RING or NESTED EXTNAME = 'xtension' / name of this binary table extension NSIDE = 32 / 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2-dimensional binary table NAXIS1 = 12288 / width of table in bytes NAXIS2 = 12 / number of rows in table PCOUNT = 0 / size of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 3 / number of fields in each row COMMENT COMMENT ----------------------------------------------- COMMENT Sky Map Pixelisation Specific Keywords COMMENT ----------------------------------------------- PIXTYPE = 'HEALPIX ' / HEALPIX Pixelisation ORDERING= 'RING ' / Pixel ordering scheme, either RING or NESTED NSIDE = 32 / Resolution parameter for HEALPIX FIRSTPIX= 0 / First pixel # (0 based) LASTPIX = 12287 / Last pixel # (0 based) COORDSYS= 'unknown ' / Pixelisation coordinate system COMMENT G = Galactic, E = ecliptic, C = celestial = equatorial BAD_DATA= -1.637500000000E+30 / Sentinel value given to bad pixels COMMENT COMMENT ----------------------------------------------- COMMENT Planck Simulation Specific Keywords COMMENT ----------------------------------------------- EXTNAME = 'SMOOTHED DATA' CREATOR = 'SMOOTHING' / Software creating the FITS file VERSION = '3.11 ' / Version of the simulation software COMMENT MAX-LPOL= 64 / Maximum Legendre order L POLCCONV= 'COSMO ' / Coord. convention for polarisation (COSMO/IAU) FWHM = 1.000000000000E+01 / [deg] FWHM of gaussian symmetric beam COMMENT ----------------------------------------------- COMMENT Data Description Specific Keywords COMMENT ----------------------------------------------- COMMENT COMMENT Full sky data OBJECT = 'FULLSKY ' INDXSCHM= 'IMPLICIT' / Indexing : IMPLICIT or EXPLICIT GRAIN = 0 / Grain of pixel indexing COMMENT GRAIN=0 : no indexing of pixel data (IMPLICIT) COMMENT GRAIN=1 : 1 pixel index -> 1 pixel data (EXPLICIT) COMMENT GRAIN>1 : 1 pixel index -> data of GRAIN consecutive pixels (EXPLICIT) COMMENT POLAR = T / Polarisation included (True/False) DERIV = 0 / Derivative included (0, 1 or 2) COMMENT TTYPE1 = 'TEMPERATURE' / Temperature map TFORM1 = '1024E ' / data format of field: 4-byte REAL TUNIT1 = 'unknown ' / map unit COMMENT TTYPE2 = 'Q-POLARISATION' / Q Polarisation map TFORM2 = '1024E ' / data format of field: 4-byte REAL TUNIT2 = 'unknown ' / map unit COMMENT TTYPE3 = 'U-POLARISATION' / U Polarisation map TFORM3 = '1024E ' / data format of field: 4-byte REAL TUNIT3 = 'unknown ' / map unit COMMENT COMMENT COMMENT ************************* Input data ************************* COMMENT Input Map in wmap_band_iqumap_r9_7yr_W_v4_udgraded32_masked.fits COMMENT *************************************************************** COMMENT END <ħÕ<æ2|<Öø<¸þç<º-™<Ê”<ózR= ü˜<þ„<Ê£›<«ÄT<­ž|<µPû<¼¥Ú<ÌØÚ<üO_=ýQ=&7ë=Ûø<ñ•<»™/<›vI<™P4<§ë<°P]<´vÆ<·$<Ê]/=«Æ=&ÕÍ=A!{=AÊ=,p= »¸<ßA<©ø<…ó><~â<Žš?<£L<«>º<¬t<©XM<«ê<ß±="=-U¯=S”'=cQÇ=Zl¶=@¤x= ¸+=Á<ÍÀ&<–$=CG`=+€ë=4ê=©€<Ò–><“ŸÙ<~Ï<¥Ç½<èÕ*=Aí=M©ö=w¶K=Šá =‘½==r=‡*ñ=t4í=Y¢8=CãJ=1ûì=Âs= Ѫ<êù_<³A‡l=³?=sA=(n=*ú=,ÛÂ=.y=-¿ó=$u_= æÿ<Òß.<Œo<¥Ö<ôÒ¡=Ü·=-™È=3B¨=+¹]=$fC=ö¬= üo=.lü=@J1=Fõ¡=7Ú=Zƒ<Ô8%<‚¨U< 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:l~[;I³¨;†æ,;Ii;>¿ž;PX:ЉO:tÕ–¹ÔOºšj*º×õPºh:“=è;Q(½;‹Ø–;‡wç;måºT€/»“v=»îdØ»òÓl»˜> º-æs;#“Y;‚^d;q€%;p:Â¥F::ìïº5;ºâ«ÿºâ@Ó8P”3;*M˜;‰# ;„Ö@:½»Ü»7Ê÷»Òã)»×À£»@}œ:ÁìÇ;},;göµ:þŠ:‚¯ºŒÒ»¬@º®ê:×Ú¡;„ÿ;kX¹Ë¼»²q±»¶öº ;qT²;c2Ê:„ºÑ4T»4e·DäV;yõŠ;Wµ¶»ƒ‡"»‡ù¬;Gê•;Mn™ºç‰"»4š÷;J%·%!̹—âÛ9øC¹ºªhealpy-1.8.1/healpy/test/test_visufunc.py0000644000175000017500000000177212346125412020774 0ustar zoncazonca00000000000000import unittest import numpy as np import healpy as hp from ..visufunc import * from ..zoomtool import mollzoom class TestNoCrash(unittest.TestCase): def setUp(self): self.nside = 1 self.m = np.arange(hp.nside2npix(self.nside), dtype=np.double) self.ma = self.m.copy() self.ma[3] = hp.UNSEEN self.ma = hp.ma(self.ma) def test_cartview_nocrash(self): cartview(self.m) def test_mollview_nocrash(self): mollview(self.m) def test_gnomview_nocrash(self): gnomview(self.m) def test_orthview_nocrash(self): orthview(self.m) def test_mollzoom_nocrash(self): mollzoom(self.m) def test_cartview_ma_nocrash(self): cartview(self.ma) def test_mollview_ma_nocrash(self): mollview(self.ma) def test_gnomview_ma_nocrash(self): gnomview(self.ma) def test_orthview_ma_nocrash(self): orthview(self.ma) def test_mollzoom_ma_nocrash(self): mollzoom(self.ma) healpy-1.8.1/healpy/test/test_doctest_cython.py0000644000175000017500000000100012346125412022143 0ustar zoncazonca00000000000000import unittest import doctest from .. import _query_disc from .. import _pixelfunc # FIXME: I can't get py.test to recognize test suites returned with # doctest.DocTestSuite. class TestDoctestCython(unittest.TestCase): def test_query_disc(self): failed, passed = doctest.testmod(_query_disc) self.assertEqual(failed, 0) def test_pixelfunc(self): failed, passed = doctest.testmod(_pixelfunc) self.assertEqual(failed, 0) if __name__ == '__main__': unittest.main() healpy-1.8.1/healpy/test/test_fitsfunc.py0000644000175000017500000000657312346125412020757 0ustar zoncazonca00000000000000import os import pyfits import unittest import numpy as np import healpy from ..fitsfunc import * from ..sphtfunc import * class TestFitsFunc(unittest.TestCase): def setUp(self): self.nside = 512 self.m = np.arange(healpy.nside2npix(self.nside)) self.filename = 'testmap.fits' def test_write_map_IDL(self): write_map(self.filename, self.m, fits_IDL=True) read_m = pyfits.open(self.filename)[1].data.field(0) self.assertEqual(read_m.ndim, 2) self.assertEqual(read_m.shape[1], 1024) self.assertTrue(np.all(self.m == read_m.flatten())) def test_write_map_C(self): write_map(self.filename, self.m, fits_IDL=False) read_m = pyfits.open(self.filename)[1].data.field(0) self.assertEqual(read_m.ndim, 1) self.assertTrue(np.all(self.m == read_m)) def test_write_map_C_3comp(self): write_map(self.filename, [self.m, self.m, self.m], fits_IDL=False) read_m = pyfits.open(self.filename)[1].data for comp in range(3): self.assertTrue(np.all(self.m == read_m.field(comp))) def tearDown(self): os.remove(self.filename) class TestReadWriteAlm(unittest.TestCase): def setUp(self): s=Alm.getsize(256) self.alms = np.arange(s, dtype=np.complex128) def test_write_alm(self): write_alm('testalm_128.fits',self.alms,lmax=128,mmax=128) a0 = read_alm('testalm_128.fits') # Sanity check of the file self.assertEqual(Alm.getlmax(len(a0)),128) # Check the written data a0 = read_alm('testalm_128.fits') l0,m0 = Alm.getlm(128) # We extract 0 <= l <= 128 and 0 <= m <= 128 from self.alms idx = Alm.getidx(256,l0,m0) np.testing.assert_array_almost_equal(self.alms[idx],a0) def test_write_alm_256_128(self): write_alm('testalm_256_128.fits',self.alms,lmax=256,mmax=128) a0,mmax = read_alm('testalm_256_128.fits',return_mmax=True) self.assertEqual(mmax, 128) self.assertEqual(Alm.getlmax(len(a0),mmax=mmax),256) # Check the written data a0 = read_alm('testalm_256_128.fits') l0,m0 = Alm.getlm(256) idx = Alm.getidx(256, l0, m0) # Extract 0 <= l <= 256 and 0 <= m <= 128 idx_mmax = np.where(m0 <= mmax) idx = idx[idx_mmax] np.testing.assert_array_almost_equal(self.alms[idx], a0) class TestReadWriteCl(unittest.TestCase): def tearDown(self): os.remove("test_cl.fits") def test_write_read_cl_II(self): cl = np.arange(1025, dtype=np.double) write_cl("test_cl.fits", cl) cl_read = read_cl("test_cl.fits") np.testing.assert_array_almost_equal(cl, cl_read) def test_write_read_cl_4comp(self): cl = [np.arange(1025, dtype=np.double) for n in range(4)] write_cl("test_cl.fits", cl) cl_read = read_cl("test_cl.fits") for cl_column, cl_read_column in zip(cl, cl_read): np.testing.assert_array_almost_equal(cl_column, cl_read_column) def test_write_read_cl_6comp(self): cl = [np.arange(1025, dtype=np.double) for n in range(6)] write_cl("test_cl.fits", cl) cl_read = read_cl("test_cl.fits") for cl_column, cl_read_column in zip(cl, cl_read): np.testing.assert_array_almost_equal(cl_column, cl_read_column) if __name__ == '__main__': unittest.main() healpy-1.8.1/healpy/data/0000755000175000017500000000000012351601662015446 5ustar zoncazonca00000000000000healpy-1.8.1/healpy/data/pixel_window_n0008.fits0000650000175000017530000002070011705033043022021 0ustar zoncaplanck00000000000000SIMPLE = T / Written by IDL: Fri Nov 29 16:12:11 2002 BITPIX = 16 / Number of bits per data pixel NAXIS = 0 / Number of data axes EXTEND = T / FITS data may contain extensions DATE = '2002-11-30' / Creation UTC (CCCC-MM-DD) date of FITS header COMMENT FITS (Flexible Image Transport System) format is defined in 'Astronomy COMMENT and Astrophysics', volume 376, page 359; bibcode 2001A&A...376..359H END XTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / 8-bit bytes NAXIS = 2 / 2-dimensional binary table NAXIS1 = 16 / width of table in bytes NAXIS2 = 33 / number of rows in table PCOUNT = 0 / size of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 2 / number of fields in each row COMMENT EXTNAME = 'PIXEL WINDOW' / NSIDE = 8 / Resolution parameter for HEALPIX MAX-LPOL= 32 / Maximum multipole l=4*nside COMMENT COMMENT COMMENT COMMENT Contains pixel window smoothing factors COMMENT for temperature and polarization for NSIDE = 8 COMMENT for multipoles in range [0, 32] COMMENT TTYPE1 = 'TEMPERATURE' / TEMPERATURE pixel window smoothing factors TFORM1 = '1D ' / data format of field: 8-byte REAL TUNIT1 = 'unknown ' / no unit COMMENT TTYPE2 = 'POLARIZATION' / POLARIZATION pixel window smoothing factors TFORM2 = '1D ' / data format of field: 8-byte REAL TUNIT2 = 'unknown ' / no unit HISTORY HISTORY For NSIDE <= 128, the T and P windows are computed exactly HISTORY by averaging the individual pixel windows. HISTORY For NSIDE > 128 : HISTORY * The average T window is extrapolated from smaller NSIDE HISTORY assuming a scaling of the window function with the pixel radius HISTORY similar to the one exhibited by a tophat window HISTORY * The P window is assumed proportional to T HISTORY E. Hivon, Nov 2002 END ?ð ?ïôQú’q?ïÜbÖ@˜¹?ïô` åƒ?ï¸æ>Ò ?ïÐd@ä?ï‰Çí07ç?ï¡QçkŒ?ïO2Ì4L?ïf˜åìíª?ï \ »M©?ï —[08?Ûò P?îÏŒš‰¢á?î\ðèk?îsÁ£cßË?íöõɤ?î ˆ¼|­¶?í†îèXÅ ?í='õÔ?í >±,Y'?í#Ad?ìŠP4v¡²?ì εçÑ?ëþ•Å~V?ìò4G«?ëjˆc·II?ë‰b®^Y?êΧ'oï?êãG°dͳ?ê+vq–µÚ?ê?±ã9Ä?é¢ì¥?é•QŒô°&?èÑPf?èä´_Ukª?èxª§V?è.k…ËÄN?ç`ܳ^?çs ú¾ë²?æ¡"ü‘4{?æ³(à¾_ä?åÝÑä‡x?åï\ÞÝ~*?å1úš’‹?å(?‚ N´?äMÛÊ·î?ä^i¥˜ÆÀ?ã‚g ã™Ä?ã’sâäÆ?âµmgg¡?âÄö Ís?áç‚??áö†µýͰ?á;ò¨&ñ?á'ºÅÇ^?àK,¾±­?àY%a]¥?ÞûÉóGC?߬ hÇ?Ýcäÿpª2?Ý}¸ä°b ?ÛÏÁ:$Äæ?Ûè†ÿã7healpy-1.8.1/healpy/data/pixel_window_n8192.fits0000650000175000017530000202050011705033043022035 0ustar zoncaplanck00000000000000SIMPLE = T / Written by IDL: Fri Nov 29 16:12:12 2002 BITPIX = 16 / Number of bits per data pixel NAXIS = 0 / Number of data axes EXTEND = T / FITS data may contain extensions DATE = '2002-11-30' / Creation UTC (CCCC-MM-DD) date of FITS header COMMENT FITS (Flexible Image Transport System) format is defined in 'Astronomy COMMENT and Astrophysics', volume 376, page 359; bibcode 2001A&A...376..359H END XTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / 8-bit bytes NAXIS = 2 / 2-dimensional binary table NAXIS1 = 16 / width of table in bytes NAXIS2 = 32769 / number of rows in table PCOUNT = 0 / size of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 2 / number of fields in each row COMMENT EXTNAME = 'PIXEL WINDOW' / NSIDE = 8192 / Resolution parameter for HEALPIX MAX-LPOL= 32768 / Maximum multipole l=4*nside COMMENT COMMENT COMMENT COMMENT Contains pixel window smoothing factors COMMENT for temperature and polarization for NSIDE = 8192 COMMENT for multipoles in range [0,32768] COMMENT TTYPE1 = 'TEMPERATURE' / TEMPERATURE pixel window smoothing factors TFORM1 = '1D ' / data format of field: 8-byte REAL TUNIT1 = 'unknown ' / no unit COMMENT TTYPE2 = 'POLARIZATION' / POLARIZATION pixel window smoothing factors TFORM2 = '1D ' / data format of field: 8-byte REAL TUNIT2 = 'unknown ' / no unit HISTORY HISTORY For NSIDE <= 128, the T and P windows are computed exactly HISTORY by averaging the individual pixel windows. HISTORY For NSIDE > 128 : HISTORY * The average T window is extrapolated from smaller NSIDE HISTORY assuming a scaling of the window function with the pixel radius HISTORY similar to the one exhibited by a tophat window HISTORY * The P window is assumed proportional to T HISTORY E. 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'AstronomyCOMMENT and Astrophysics', volume 376, page 359; bibcode: 2001A&A...376..359H DATE = '2005-08-17T23:04:27' / file creation date (YYYY-MM-DDThh:mm:ss UT) END XTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / 8-bit bytes NAXIS = 2 / 2-dimensional binary table NAXIS1 = 24 / width of table in bytes NAXIS2 = 256 / number of rows in table PCOUNT = 0 / size of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 3 / number of fields in each row NSIDE = 128 / Resolution parameter for HEALPIX CREATOR = 'QUAD_RING' / Software creating the FITS file VERSION = '1.3.0 ' / Version of the simulation software MAX-LPOL= 454 / Maximum multipole l used in map synthesis COMMENT COMMENT ----------------------------------------------- COMMENT Data Description Specific Keywords COMMENT ----------------------------------------------- COMMENT COMMENT contains D_weight for the north hemisphere of HEALPIX COMMENT each ring has to be multiplied by (1+D_weight) COMMENT in order to improve the quadrature when analyzing a map COMMENT COMMENT computed by SVD using DGESDD from Lapack library COMMENT TTYPE1 = 'TEMPERATURE WEIGHTS' / Temperature weights TUNIT1 = '1 ' / unit TFORM1 = '1D ' MAXVAL1 = 1.770797556810E-01 / maximum value of T weights MINVAL1 = -9.340929615201E-02 / minimum value of T weights COMMENT TTYPE2 = 'Q-POLARISATION WEIGHTS' / Q Polarisation weights TUNIT2 = '1 ' / unit TFORM2 = '1D ' MAXVAL2 = 1.770797556810E-01 / maximum value of Q weights MINVAL2 = -9.340929615201E-02 / minimum value of Q weights COMMENT TTYPE3 = 'U-POLARISATION WEIGHTS' / U Polarisation weights TUNIT3 = '1 ' / unit TFORM3 = '1D ' MAXVAL3 = 1.770797556810E-01 / maximum value of U weights MINVAL3 = -9.340929615201E-02 / minimum value of U weights COMMENT END ?ƪŒ§·~h?ƪŒ§·~h?ƪŒ§·~h¿·é«ðÚ¿·é«ðÚ¿·é«ðÚ?¯ '¾€?¯ '¾€?¯ '¾€¿¥çn~ĵ¿¥çn~ĵ¿¥çn~ĵ?  Ȩ÷v?  Ȩ÷v?  Ȩ÷v¿—ÖålÆl¿—ÖålÆl¿—ÖålÆl?‘© ­êò±?‘© ­êò±?‘© 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HISTORY For NSIDE > 128 : HISTORY * The average T window is extrapolated from smaller NSIDE HISTORY assuming a scaling of the window function with the pixel radius HISTORY similar to the one exhibited by a tophat window HISTORY * The P window is assumed proportional to T HISTORY E. Hivon, Nov 2002 END ?ð?ïÿôÏ4(?ïÿÜ5xµT?ïÿôÑS¯?ïÿ¸kµ•?ïÿÐGU!ï?ïÿˆ²¾»?ïÿ ŽãT1?ïÿM ¨w2?ïÿdè¨Mý?ïÿyË?ïÿTÛ‹J?ïþ±øõr?ïþÉÓ¿ ?ïþRŠ=»ž?ïþje¢8*?ïýç/º-I?ïýÿ ܈?ïýoèù#Ò?ïý‡ÃÑó?ïüì¶iŽø?ïýð#Z?ïü]˜…t?ïüur³GB?ïûÂÑìî?ïûÚiŸšÿ?ïûœß'Õ?ïû3vEM?ïúhÀHf ?ïú€™?žê?ïù©ú³û??ïùÁÓ4äÛ?ïøßLÓL{?ïø÷$Ö„P?ïø·bÏ4?ïø Žàó ?ï÷&;*?ï÷>¶Y?ïö7ØûŠ&?ïöO¯Yaƒ?ïõ=‘´õ?ïõUgw”ç?ïô7f>ôv?ïôO;^ü“?ïó%W>(?ïó=,Nè?ïòfžß?ïò:cKQ?ïðÝ”|³?ïðõgˆ¸¯?ïï§â.ô?ïèén ?ïé<+5?ïçl”4¨h?ïç„ae¡ß?ïåãã—?ïåû¯@?ïäO[äŽø?ïäg''”?ïâ¯RC ?ïâÆÊ’ˆÙ?ïáÑÎYË?ïá› ¿?ïßJÑæj’?ïßbš 3˜?ï݇2ûÙ?ïÝžÉ@‡»?ïÛ·dW€X?ïÛÏ*E{Ø?ïÙÛúTó?ïÙó¾ÉmÌ?ï×ôÄì¾?ïØ ˆ…£?ïÖÆÚåu?ïÖ‰>FS?ïÔ›×?ïÔÂÂd³?ïÑøw ~Ø?ïÒ6ëë5?ïÏâ)¦?ïÏù矤3?ïÍÀˆð?ïÍ×ÖÍ4U?ïW!'Knv?ïW8šôi ?ïS0ð BQ?ïSHaAfê?ïO5j†Y%?ïOLÙDŸ~?ïK.šjH??ïKF¨ªÖÇ^?ï>íô\?ï:¢º¿Šj?ï:º¸Ic?ï6c® 9?ï6{ bl(?ï2m•°Ú?ï20ÊA³?ï-ÃýL=š?ï-ÛWGnŠ?ï)ca+‡Ç?ï)z¸nóU?ï$÷8à ?ï%ñ½”t?ï €µƒ§?ï ˜B‡?ïþ®$Ò‘?ïýLö?ïq‹?Ѻ?ïˆ×^Íò?ïÙQœ®?ïðšF2¥?ï6¡$?ïMJn?ï ‡§_3+?ï žêÚN?ïÎ@†j?ïåu+?ï Ók7\?ï!T‰?îû:dkÑè?îûQŸ%‘?îö_÷ð2¶?îöw/…ãÇ?îñz’j5?îñ‘ÆõFc?îìŠ8TΣ?îì¡iκ?îçŽî5ŒÄ?î禗ZB?î∸› ú?îâŸãÝë ?îÝwœ©‰?îÝŽÄ:Òe?îØ[_j ?îØrÂP—?îÓ4Á ÞÃ?îÓKâÉ>©?îÎ Ø)?îÎ*[}¶?îÈÆ‚‚ñ¡?îÈÝÅz*?îÃ)Ôa?îÖAÏ_ã?î¾-ž¨?î¾DJÔ¢?î¸Ð»5§?î¸ç/ðÓ?î³ht1? 8â?î­öŠô:?î® $–?î¨xò"Ú?î¨ùSO´?î¢ñ#Ø:G?î£'™¾?î^¨µB÷?îu¨ÿŸô?î—Á…Í?î—Ø‚šZ—?î’À<?î’0¹…«B?îŒg]( ³?îŒ~RçC“?a¿Ä??î†ÁSîÜ?î€âÓ;Ug?î€ùÁÒé?î{¶ÛíË?î{'¡Ôw[?îu4ëÚ?îuJù?¦n?îoLé¾}³?îocÍfúU?îi[C°FÃ?îir#¦å¯?îc_%&«:?îcvdàÿ?î]X“?î]olc?îWG”d ø?îW^iÙ??îQ,-"ÉO?îQBþŸ?îKcU™p?îK0pù"?îDÖ<Žš—?îDíÑn?î>›¾hÃ4?î>²ƒËÇ?î8Vî‡Ù)?î8m°þg?î2Ò˜iÒ?î2)>ú?î+®pOÂ?î+Å)íÙ?î%JÍkæR?î%aƒÔI?îÜﳊ)?îó¡Xç½?îdÜö’?î{Š•qÉ?îâ› [œ?îùDžoÈ?î V/Ô%?î lÕTv+?î¿¡9QÇ?îÖB §Õ?íþõ,º\?íþ5’t®#?í÷t1¨qÁ?í÷ŠÊʰ?íð¿\¯‡?íðÕñ¥Kå?íê|K Y?íê Ф?íã7–‘‰Õ?íãN#Û¸?íÜd±œ•°?íÜ{9é w?íÕ‡Óß|?íÕžW˜6 ?íΡšÍé?íη‚VȦ?íǰDï #?íÇÆÀYo'?íÀµ ÊwZ?íÀÌÝa?í¹±r)á?í¹Ç&ÄG?í²¢¾3^™?í²¹,ƒËW?í«ŠŒcr ?í« öI…Õ?í¤h_ן?í¤~òÕjÜ?í<ÇŽí?íS(Œÿ²?í–A[¤¤?í–ÝÎÈ?íŽÈ>¼?íŽÞY=^Û?í‡ ²Ú‚?퇕a)*?í€,m?Sž?í€B¼&”¢?íxÐ&pÂ÷?íxæpÂäu?íqj?ÜBÑ?íq€…“7Œ?íiúÀ¼X?íj4zó?íb­Üß?íb—êKaó?íZÿÃô?í[G„\š?íSrì…„?íS‰“Ž–?íKÝJßðt?íKóy4Æ?íD>1•Ç”?íDT[+rm?í<•§r ¾?í<«ÌBšÆ?í4ã³GQ£?í4ùÓLÔÃ?í-([ï­?í->w$;C?í%c¨L±Â?í%y¾ªdú?핟Gdz?í«°ÈZ§?í¾GÐ3!?íÔTnŽ/?í ݨÞê§?í ó°”У?íóÉr®?í Ì:Hÿ?ìþ°‘ìp?ìþ®ejw?ìöeJWœ?ìö^#êç?ìíþî°Úw?ìî⊹d?ìåðSá9?ìæBµô/?ìÝØ›ÿµÝ?ìÝî…Èß[?ìÕ·Î5ªS?ìÕͲíÛ?ìÍñ´ÚÞ?ìÍ£ÑVYÈ?ìÅ[ µ¾0?ìÅpè:ÖM?ì½)wɵ?ì½4þÚÊ:?ì´ÚLAgÐ?ì´ð|¤*?쬌}_í¹?쬢Hm½—?ì¤5Ä'‘û?ì¤KŠQC?ì›Ö'óbJ?ì›ëè•q?ì“m°%9š?쓃kˆü}?ìŠüd%¶{?ì‹E–?ì‚‚Kd0€?ì‚—ü:™¼?ìyÿmV®æ?ìzÞ?ìqsÑyÝú?ìq‰w¬²Ù?ìhßQ€?ìhõ )Äü?ì`B~eþR?ì`Xß&®?ìWœÖI(W?ìW²l]Ì¡É?ì=Ä´q?ì4°F yê?ì4ÅÆV®Ç?ì+ßÌNé??ì+õGÙ?ì#ÙG¤‰?ì#NŠìz?ì%t´  ?ì:älá¶?ì;¦Yu?ìQ€æä?ìIuþ)k?ì^ÚUE?ëÿNësd?ëÿdJj¦¦?ëöLŽ™?ëöagåkl?ëí@ç+7?ëíV:Ü?©?ëä-}*h?ëäBË0ÁU?ëÛØtI?ëÛ' Ê…G?ëÑîö(„?ëÒC— a?ëÈÁþ£e¬?ëÈ×;‰½•?ë¿Ùu7ð?ë¿£›ÑÆ?ë¶Q™j£Û?ë¶fÊÌS?ë­ FˆpÀ?ë­"r z?ë£ÀèÙT?ë£Ö¡…O?ëšlˆlÚ?뚨`ì?ë‘-YtR?ë‘%Gt?뇫ߺV™?ë‡Àóöw ?ë~?§°wý?ë~T¶ ï?ëtËbS"?ëtà•Ò>¦?ëkO˜ûÛˆ?ëkd›~B?ëaËÒ®r´?ëaàÏ> ?ëX@B°Ýà?ëXU9HÎî?ëN¬ñ?:õ?ëNÁáÚŠƒ?ëEæšö?ëE&Ñ4¯±?ë;o+ ¾ù?ë;„òÒ?ë1ÄÆÚ}å?ë1Ù¥bA?ë(Â[IR?ë('šÒµ?ëY%ã[?ëmøE?ë—ùΚ?ë¬Æ$—?ë ÏF{¨ý?ë ä ¤Û?ëÿQ¨›?ëÔWÌ?ê÷'kº_ò?ê÷<%—Cð?êíHU%3?êí]Ô¤—?êãaÙý(?êãv†ƒmJ?êÙsÿÖ•?êÙˆ§¦³?êÏ~Ò):?êÏ“s&o?êÅ‚X?ÔB?êÅ–ó „{?ê»~šã^/?껓/i=?ê±s¢‰¾?ê!õ¸ ?ê" ìWdÍ?ê‚XXˆ?ê–†PŸ?ê HÈ´Í?ê oþ3?ꇒ)©µ?꛲Èýà?éø=S´Œ?éøWX‹x?éírS#ˆS?éí†f‰“Ò?éâÝÜyªŽ?éâñé<¡?éØBâ:hŽ?éØVèV×?éÍ¡mMÌm?é͵l½Òÿ?éÂù†Ÿ’Ý7•Ë?é ?*tÆ?é .ÃÊF?èÿ]Ê™?èÿÛqéÑ?èóé¶­fk?èóý-X]b?èèÈRÿŒ?èèÛªU`?èÝ¡;ð†Ç?èÝ´¤—S„?èÒtz²•?èÒ‡ÜQœ?èÇBz®ô?èÇUs*Ê?è¼ €vz?è¼r¨D?è°Ì•þ1…?è°ßâo_?襉ˆ0¼â?襜͋16?èš@þW©?èšT<—ŒÜ?èŽó´jÀ?è8Öb%?胟›‹Ùã?胲ˌú?èxFÕ$g?ç‘&|{†¹?ç‘9‘í?ç…e>Ü71?ç…w΄õ^?çyŸo$½Þ?çy±÷]{í?çmÕÈ1c?çmç—Æs?çb?;€?çb¸Š_Û?çV2ñó[?çVEcÉ8@?çJ[8hA–?çJm¢ÁšG?ç>`ü?ç>‘~ì!?ç2ž¦k•[?ç2±­í?ç&¹àîö³?ç&Ì4À^?çÐÕÏ?çã!a€¡?çãŒf¢?çõÑ#Œ?æ)øªT?æ*Õu7G?æÛyÆ~8?æí}‰?æš^U?æ«úC?åøUá1¸€?åøguT®v?åì éíØ?åì˜?NV?åßÂè mA?åßÔl¹ë?åÓt$?åÓ…ûÖ× ?åÇ"ÚÁïz?åÇ4OŸ­¾?åºÎs 7?åºßqyY/?å®vÅX?宇jòÿ?å¢èG§ç?å¢,E—Ü^?啼µ‡uÂ?å•Î ù C?å‰[wv?å‰lÄ£«F?å|÷6xs ?å}|%¿‡?åpýE~?åp¡; *œ?åd%ÕäC?åd7 ç¥l?åW¸ÇM&ô?åWÉõB¶Ö!•À?å>ç?¯þ?å2`œ±rn?å2q²Ú÷º?å%èX„E?å%ùfºq>?åm^˜Êo?å~dÙïØ?å ï¸{XS?å ¶ÅÞ?åoo¶Ô¤?å€fù ?äóìÕë×?äóý|*_å?äçgbÈ~?äçx¹rí?äÚß$ç ›?äÚð=×#?äÎT°ë¿!?äÎe‡@žp?äÁÇÉùW_?äÁؘJ? 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˜é>¶¨²Äßò>¶¨²Äßò>¶¨²Äßò¾ªf’j½V¾ªf’j½V¾ªf’j½V¾«eœ©è;¾«eœ©è;¾«eœ©è;>¼/9GüX>¼/9GüX>¼/9GüXhealpy-1.8.1/healpy/data/pixel_window_n4096.fits0000650000175000017530000102060011705033043022034 0ustar zoncaplanck00000000000000SIMPLE = T / Written by IDL: Fri Nov 29 16:12:12 2002 BITPIX = 16 / Number of bits per data pixel NAXIS = 0 / Number of data axes EXTEND = T / FITS data may contain extensions DATE = '2002-11-30' / Creation UTC (CCCC-MM-DD) date of FITS header COMMENT FITS (Flexible Image Transport System) format is defined in 'Astronomy COMMENT and Astrophysics', volume 376, page 359; bibcode 2001A&A...376..359H END XTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / 8-bit bytes NAXIS = 2 / 2-dimensional binary table NAXIS1 = 16 / width of table in bytes NAXIS2 = 16385 / number of rows in table PCOUNT = 0 / size of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 2 / number of fields in each row COMMENT EXTNAME = 'PIXEL WINDOW' / NSIDE = 4096 / Resolution parameter for HEALPIX MAX-LPOL= 16384 / Maximum multipole l=4*nside COMMENT COMMENT COMMENT COMMENT Contains pixel window smoothing factors COMMENT for temperature and polarization for NSIDE = 4096 COMMENT for multipoles in range [0,16384] COMMENT TTYPE1 = 'TEMPERATURE' / TEMPERATURE pixel window smoothing factors TFORM1 = '1D ' / data format of field: 8-byte REAL TUNIT1 = 'unknown ' / no unit COMMENT TTYPE2 = 'POLARIZATION' / POLARIZATION pixel window smoothing factors TFORM2 = '1D ' / data format of field: 8-byte REAL TUNIT2 = 'unknown ' / no unit HISTORY HISTORY For NSIDE <= 128, the T and P windows are computed exactly HISTORY by averaging the individual pixel windows. 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contain extensions COMMENT FITS (Flexible Image Transport System) format is defined in 'AstronomyCOMMENT and Astrophysics', volume 376, page 359; bibcode: 2001A&A...376..359H DATE = '2005-08-17T23:03:57' / file creation date (YYYY-MM-DDThh:mm:ss UT) END XTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / 8-bit bytes NAXIS = 2 / 2-dimensional binary table NAXIS1 = 24 / width of table in bytes NAXIS2 = 32 / number of rows in table PCOUNT = 0 / size of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 3 / number of fields in each row NSIDE = 16 / Resolution parameter for HEALPIX CREATOR = 'QUAD_RING' / Software creating the FITS file VERSION = '1.3.0 ' / Version of the simulation software MAX-LPOL= 48 / Maximum multipole l used in map synthesis COMMENT COMMENT ----------------------------------------------- COMMENT Data Description Specific Keywords COMMENT ----------------------------------------------- COMMENT COMMENT contains D_weight for the north hemisphere of HEALPIX COMMENT each ring has to be multiplied by (1+D_weight) COMMENT in order to improve the quadrature when analyzing a map COMMENT COMMENT computed by SVD using DGESDD from Lapack library COMMENT TTYPE1 = 'TEMPERATURE WEIGHTS' / Temperature weights TUNIT1 = '1 ' / unit TFORM1 = '1D ' MAXVAL1 = 1.657766897421E-01 / maximum value of T weights MINVAL1 = -7.241365388457E-02 / minimum value of T weights COMMENT TTYPE2 = 'Q-POLARISATION WEIGHTS' / Q Polarisation weights TUNIT2 = '1 ' / unit TFORM2 = '1D ' MAXVAL2 = 1.657766897421E-01 / maximum value of Q weights MINVAL2 = -7.241365388457E-02 / minimum value of Q weights COMMENT TTYPE3 = 'U-POLARISATION WEIGHTS' / U Polarisation weights TUNIT3 = '1 ' / unit TFORM3 = '1D ' MAXVAL3 = 1.657766897421E-01 / maximum value of U weights MINVAL3 = -7.241365388457E-02 / minimum value of U weights COMMENT END ?Å8+ªpÎ?Å8+ªpÎ?Å8+ªpﲉ³ƒ7Ôf¿²‰³ƒ7Ôf¿²‰³ƒ7Ôf? Êë P'? Êë P'? Êë 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0.00000E+00 -0.19423E+02 1976 0.21464E+03 0.10427E+02 0.00000E+00 -0.19506E+02 1977 0.21486E+03 0.10368E+02 0.00000E+00 -0.19587E+02 1978 0.21508E+03 0.10307E+02 0.00000E+00 -0.19666E+02 1979 0.21531E+03 0.10246E+02 0.00000E+00 -0.19744E+02 1980 0.21555E+03 0.10184E+02 0.00000E+00 -0.19820E+02 1981 0.21579E+03 0.10122E+02 0.00000E+00 -0.19894E+02 1982 0.21603E+03 0.10059E+02 0.00000E+00 -0.19966E+02 1983 0.21628E+03 0.99962E+01 0.00000E+00 -0.20037E+02 1984 0.21653E+03 0.99325E+01 0.00000E+00 -0.20107E+02 1985 0.21679E+03 0.98684E+01 0.00000E+00 -0.20176E+02 1986 0.21705E+03 0.98038E+01 0.00000E+00 -0.20243E+02 1987 0.21731E+03 0.97388E+01 0.00000E+00 -0.20309E+02 1988 0.21758E+03 0.96735E+01 0.00000E+00 -0.20374E+02 1989 0.21785E+03 0.96079E+01 0.00000E+00 -0.20438E+02 1990 0.21812E+03 0.95419E+01 0.00000E+00 -0.20501E+02 1991 0.21840E+03 0.94757E+01 0.00000E+00 -0.20564E+02 1992 0.21868E+03 0.94092E+01 0.00000E+00 -0.20625E+02 1993 0.21896E+03 0.93425E+01 0.00000E+00 -0.20686E+02 1994 0.21924E+03 0.92756E+01 0.00000E+00 -0.20747E+02 1995 0.21952E+03 0.92085E+01 0.00000E+00 -0.20806E+02 1996 0.21980E+03 0.91413E+01 0.00000E+00 -0.20866E+02 1997 0.22009E+03 0.90740E+01 0.00000E+00 -0.20925E+02 1998 0.22037E+03 0.90066E+01 0.00000E+00 -0.20984E+02 1999 0.22066E+03 0.89392E+01 0.00000E+00 -0.21043E+02 2000 0.22095E+03 0.88717E+01 0.00000E+00 -0.21102E+02 healpy-1.8.1/healpy/data/weight_ring_n01024.fits0000650000175000017530000016610011705033043021703 0ustar zoncaplanck00000000000000SIMPLE = T / file does conform to FITS standard BITPIX = 32 / number of bits per data pixel NAXIS = 0 / number of data axes EXTEND = T / FITS dataset may contain extensions COMMENT FITS (Flexible Image Transport System) format is defined in 'AstronomyCOMMENT and Astrophysics', volume 376, page 359; bibcode: 2001A&A...376..359H DATE = '2005-08-17T23:15:45' / file creation date (YYYY-MM-DDThh:mm:ss UT) END XTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / 8-bit bytes NAXIS = 2 / 2-dimensional binary table NAXIS1 = 24576 / width of table in bytes NAXIS2 = 2 / number of rows in table PCOUNT = 0 / size of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 3 / number of fields in each row NSIDE = 1024 / Resolution parameter for HEALPIX CREATOR = 'QUAD_RING' / Software creating the FITS file VERSION = '1.3.0 ' / Version of the simulation software MAX-LPOL= 3500 / Maximum multipole l used in map synthesis COMMENT COMMENT ----------------------------------------------- COMMENT Data Description Specific Keywords COMMENT ----------------------------------------------- COMMENT COMMENT contains D_weight for the north hemisphere of HEALPIX COMMENT each ring has to be multiplied by (1+D_weight) COMMENT in order to improve the quadrature when analyzing a map COMMENT COMMENT computed by SVD using DGESDD from Lapack library COMMENT TTYPE1 = 'TEMPERATURE WEIGHTS' / Temperature weights TUNIT1 = '1 ' / unit TFORM1 = '1024D ' MAXVAL1 = 1.748933828406E-01 / maximum value of T weights MINVAL1 = -8.915246089061E-02 / minimum value of T weights COMMENT TTYPE2 = 'Q-POLARISATION WEIGHTS' / Q Polarisation weights TUNIT2 = '1 ' / unit TFORM2 = '1024D ' MAXVAL2 = 1.748933828406E-01 / maximum value of Q weights MINVAL2 = -8.915246089061E-02 / minimum value of Q weights COMMENT TTYPE3 = 'U-POLARISATION WEIGHTS' / U Polarisation weights TUNIT3 = '1 ' / unit TFORM3 = '1024D ' MAXVAL3 = 1.748933828406E-01 / maximum value of U weights MINVAL3 = -8.915246089061E-02 / minimum value of U weights COMMENT END ?ÆbèË%6¿¶Ò²âp?«é±/a¿¡ÿ # 2‹?—œNfÒÕ¿ŒHèÚÝW…?~ÜÅd×±­¿iR?N~¾Þ72‚Wì?`)¼Ýåׂ¿i n}Ï@?lR9ÅZûí¿keÀË›¸å?g’ùDî¿b> S‰4?WYÿòá’h¿EªínÅJß¾òØÉù »?BV¯]ÔŽ¿Nž>ÔØ*x?R•F³¿S)-wmäÑ?QrRQ¬€D¿L‹iƒq?B÷îí¤ö¿2+“õš}>¾ë´üŒaCt?1-ç5wÁ¿=WI+W?BFWbÀc/¿CQÞ<Ê »?BŸ1͇ڿ=‡çdø8V?4_Xýup¿#¾z öÚŽ¾ägá”gèÄ?#ï`ÿìJy¿1/øGâ ?5¯…j“k¿79‰›ÞNY?5ë8ËŽ7¿2/6 ’£?)XyÙrÀ¿³eï© é¾Þ† ¼*Ÿ?lN>fV¿&K^µ?,­Ô\i§M¿.÷¿¸M?-uϨ¥%¿( f[¨v?!G‹ê‡)¿é±g¿S•¾ÖÖìËòèùŸ-mê.¿-ýg-?DÍ/%Èÿ¿ÇÕœ_ïî?bíµPÃÀ¿ *¯¶?p©3f;u¾õ@)rùy¾vtØìÜO>ô‘}8·Z\¿éöðK¼ 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HISTORY For NSIDE > 128 : HISTORY * The average T window is extrapolated from smaller NSIDE HISTORY assuming a scaling of the window function with the pixel radius HISTORY similar to the one exhibited by a tophat window HISTORY * The P window is assumed proportional to T HISTORY E. Hivon, Nov 2002 END ?ðD?ïý}ÕÇ?ï÷)»Ó?ïýŸ`¨ð?ïî$céŶ?ïôy=]ö?ïâA<Í?ïè2|»?ïÓjp²å?ïÙYfÙðî?ïÁ£mòLo?ïǦ$μ?ï¬ðL5—?ï²ÙSN¢Z?ï•UÐM½?ï›;2Ì‚?ïzÙfE‰å?²‘ ?ï]"õR?ïc]çÆyt?ï=SÀ êC?ïC+Kæ2?ïXš˜P?ï +¡Ts?îô—­±=?îúd?Ÿ 6?îÌ”÷ªÆ?îÑßå‰s?î ç„=Å»?(d ?îs Fë1 ?îxÃÔ…Æ?îB<þH?îH@IÿC¶?î~RŒ?€?î'zpc?êøÊ¿nÊ¢?ê£ÂL®?ê¨ã5Ká.?êRÅ ý?êW1;*å?éþ¾¥ÈUð?êÆÿOD?驹/µÄå?鮳ZûÓ¶?éS*†eÊ?éX Ë6d 128 : HISTORY * The average T window is extrapolated from smaller NSIDE HISTORY assuming a scaling of the window function with the pixel radius HISTORY similar to the one exhibited by a tophat window HISTORY * The P window is assumed proportional to T HISTORY E. Hivon, Nov 2002 END ?ð$@?ïÐÃûz2O?ïrô~šMc?ïÐãFL½˜?îçß–òG?ïD~ïùf¼?î1oŽÅýÍ?îŒWE“$?íR%ƒÎÄÓ?íªñ_Þ¾Ò?ìM³Ø" ?ì£Z|Ö5¤?ë%”YWˆ}?ëyXšcÀ?é߯²=.G?ê0…´¼?è‘j½+?è̘Dx?ç ®ÎÓ3x?çSw!˜?傪£¨A?åÈIZó~(?ãï=žxÝ?ä0ç°? T?âT%ý÷<?⑽ü?à¶Çhe?àï…×et?Þ3Tð£Ûô?ÞÇJ€ ’?Û³çtÅ?Ûh®`Ò(healpy-1.8.1/healpy/data/pixel_window_n1024.fits0000650000175000017530000021450011705033043022023 0ustar zoncaplanck00000000000000SIMPLE = T / Written by IDL: Fri Nov 29 16:12:11 2002 BITPIX = 16 / Number of bits per data pixel NAXIS = 0 / Number of data axes EXTEND = T / FITS data may contain extensions DATE = '2002-11-30' / Creation UTC (CCCC-MM-DD) date of FITS header COMMENT FITS (Flexible Image Transport System) format is defined in 'Astronomy COMMENT and Astrophysics', volume 376, page 359; bibcode 2001A&A...376..359H END XTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / 8-bit bytes NAXIS = 2 / 2-dimensional binary table NAXIS1 = 16 / width of table in bytes NAXIS2 = 4097 / number of rows in table PCOUNT = 0 / size of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 2 / number of fields in each row COMMENT EXTNAME = 'PIXEL WINDOW' / NSIDE = 1024 / Resolution parameter for HEALPIX MAX-LPOL= 4096 / Maximum multipole l=4*nside COMMENT COMMENT COMMENT COMMENT Contains pixel window smoothing factors COMMENT for temperature and polarization for NSIDE = 1024 COMMENT for multipoles in range [0, 4096] COMMENT TTYPE1 = 'TEMPERATURE' / TEMPERATURE pixel window smoothing factors TFORM1 = '1D ' / data format of field: 8-byte REAL TUNIT1 = 'unknown ' / no unit COMMENT TTYPE2 = 'POLARIZATION' / POLARIZATION pixel window smoothing factors TFORM2 = '1D ' / data format of field: 8-byte REAL TUNIT2 = 'unknown ' / no unit HISTORY HISTORY For NSIDE <= 128, the T and P windows are computed exactly HISTORY by averaging the individual pixel windows. 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bibcode 2001A&A...376..359H END XTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / 8-bit bytes NAXIS = 2 / 2-dimensional binary table NAXIS1 = 16 / width of table in bytes NAXIS2 = 9 / number of rows in table PCOUNT = 0 / size of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 2 / number of fields in each row COMMENT EXTNAME = 'PIXEL WINDOW' / NSIDE = 2 / Resolution parameter for HEALPIX MAX-LPOL= 8 / Maximum multipole l=4*nside COMMENT COMMENT COMMENT COMMENT Contains pixel window smoothing factors COMMENT for temperature and polarization for NSIDE = 2 COMMENT for multipoles in range [0, 8] COMMENT TTYPE1 = 'TEMPERATURE' / TEMPERATURE pixel window smoothing factors TFORM1 = '1D ' / data format of field: 8-byte REAL TUNIT1 = 'unknown ' / no unit COMMENT TTYPE2 = 'POLARIZATION' / POLARIZATION pixel window smoothing factors TFORM2 = '1D ' / data format of field: 8-byte REAL TUNIT2 = 'unknown ' / no unit HISTORY HISTORY For NSIDE <= 128, the T and P windows are computed exactly HISTORY by averaging the individual pixel windows. HISTORY For NSIDE > 128 : HISTORY * The average T window is extrapolated from smaller NSIDE HISTORY assuming a scaling of the window function with the pixel radius HISTORY similar to the one exhibited by a tophat window HISTORY * The P window is assumed proportional to T HISTORY E. Hivon, Nov 2002 END ?ð‘?ïFñµî?íÜ?/ÞØ?ïGÒ –žr?ëÔ»ñhHU?í-a—-ý?éJÐÓd ?ê‹>¤üµ?æ^¢ž?ç‚ÍOgq:?ã4*ç*«?ä9"Ȳ^^?ßá„pFþ3?àÔ³Xìß`?Ùrm3=?Úö’ÙÊt®healpy-1.8.1/healpy/data/weight_ring_n08192.fits0000650000175000017530000142340011705033043021720 0ustar zoncaplanck00000000000000SIMPLE = T / file does conform to FITS standard BITPIX = 32 / number of bits per data pixel NAXIS = 0 / number of data axes EXTEND = T / FITS dataset may contain extensions COMMENT FITS (Flexible Image Transport System) format is defined in 'AstronomyCOMMENT and Astrophysics', volume 376, page 359; bibcode: 2001A&A...376..359H DATE = '2005-08-18T00:57:38' / file creation date (YYYY-MM-DDThh:mm:ss UT) END XTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / 8-bit bytes NAXIS = 2 / 2-dimensional binary table NAXIS1 = 24576 / width of table in bytes NAXIS2 = 16 / number of rows in table PCOUNT = 0 / size of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 3 / number of fields in each row NSIDE = 8192 / Resolution parameter for HEALPIX CREATOR = 'QUAD_RING' / Software creating the FITS file VERSION = '1.3.0 ' / Version of the simulation software MAX-LPOL= 24576 / Maximum multipole l used in map synthesis COMMENT COMMENT ----------------------------------------------- COMMENT Data Description Specific Keywords COMMENT ----------------------------------------------- COMMENT COMMENT contains D_weight for the north hemisphere of HEALPIX COMMENT each ring has to be multiplied by (1+D_weight) COMMENT in order to improve the quadrature when analyzing a map COMMENT COMMENT computed by SVD using DGESDD from Lapack library COMMENT TTYPE1 = 'TEMPERATURE WEIGHTS' / Temperature weights TUNIT1 = '1 ' / unit TFORM1 = '1024D ' MAXVAL1 = 1.634629503848E-01 / maximum value of T weights MINVAL1 = -6.828799286753E-02 / minimum value of T weights COMMENT TTYPE2 = 'Q-POLARISATION WEIGHTS' / Q Polarisation weights TUNIT2 = '1 ' / unit TFORM2 = '1024D ' MAXVAL2 = 1.634629503848E-01 / maximum value of Q weights MINVAL2 = -6.828799286753E-02 / minimum value of Q weights COMMENT TTYPE3 = 'U-POLARISATION WEIGHTS' / U Polarisation weights TUNIT3 = '1 ' / unit TFORM3 = '1024D ' MAXVAL3 = 1.634629503848E-01 / maximum value of U weights MINVAL3 = -6.828799286753E-02 / minimum value of U weights COMMENT END ?ÄìZQ_¿±{RhTÄ?œiBˆ•ág¿{¡Ú÷õfi¿k­4­¸ºª?{ é1Ñ¿w¦’ºÀ?håF˜õ¿-PF,ög ¿[Ml4™m…?b—«‰¿] k%jÓ½?G)ê_BòV?8Œº51¿PÈg™Ëc?Rôª…{¿G8ÆeH ž?c²eægá?<pS@&,¿F+É]˜Y¶?Cz8K!âz¿2’íaŽB¿n.¨cîÕ?9.}i¿=¸,èŽ?4Ú¡”<¿0éÅ9¯Q¿'§ÀÐc?4´>?í¿3}/UQ©?#ù¼:éœ?’½úûè}¿)oRŽFß]?0Tû‚H¿(…Ù3·? ‚3"G²?y,®-]¿'–¡2šn€?'xÄØÇ±p¿$»³¦ð¾ðŸ¾¬T†™?ÏÑåIÕ¿$„;ñ³É?² w+l¿>ÚÒ~¯øÉ6„¿˜í»É?/JxZò¿£$C¶k?¿,éV ?.=gˆðD¿‹ì0u¡>?Šéh9m¤¿ ¿¥ƒ0`>¶„ªuø¸e†vck>ë2Û×;a¿ä3Üù;? `¸®¿Î,ˆîøü>Ù€õN×¢>ú#¡Kþèm¿¦( >·?–¹_W¾õÅâþÙå¾àÂ?Õìu?ªrÆ+¡¿Á6§÷ä>ÿ•&¤ƒ¼'¾ÝFf?ÅS}¾ó"MZZ[?å/–f¿Í[ÂÑ™>óf%o#)>ÓU4fÛ×¾ùØËt´ù?)ª¶dÄ̾úûÿË&>ß)–nkØ…>ì>Ô9”³ã¾üÆš†I>ýÝ…pÓU¾ñpÚçú/,¾ÂÙ&øgš>ôPXîÚÂÔ¾üh¬Ä‰9I>÷_Oîž™­¾ßé¿â¹ ¾äß‘×ë÷”>÷srÞej¾ùd (Ç>ï–ãà(æ¥>¢ßE*º¾ð ÿ áf>÷ί,‹a¾ôw$3ÇÑ“>ßõ³àÍzÔ>Þ§°-øu+¾óPvŠ>õÔhÁh‘6¾ìÆß…NñX>¦ ñ9FW<>é»dÑØ”¾ô&ºg[Ü›>ò*Õˆäü¾ßâ¼¹¼J¾Ö(1êr">ð\”ï˾òï# N>êWb#Ѹ¾¹öùïýä¾äš¢Ëa@Î>ñ1‡2¹Þä¯ é5>Ï–Æé¾êÇVMGæ½>ðЏÅÍ#¾è5/ ïäc>Âx«ñê‘>à¶ø³ãý¾í†Ù¡XÏ>ìË'H(*Q¾Þ ÿȸyh¾Ä°¹7³ÿÓ>æu#oõϾí?—J;ì>æQá·¿è¾Æ}Û¤LU9¾ÚW™½9À>ézöTAP¾éå?Ž£ì%>ÝØB.·ñ>¸Õø±zÙ¾âáÀ+ÒRÁ>é¬ÂÆ¥Ué¾ä¢yî>U¬>ÉkÙ~?À–>ÔãA¡#2¾æƒÀì}Â>çaÐŒ4–!¾ÜçuÔÅv¾§)¬ë†>ßȧ.Fjå¾æÂˆ2¤kG>ãodçäØ¾Ë„íÝ)À’¾Ð`®ò9>ã,J]Œ"«¾å.U,(>Û‹™$˜>lÛ–Å7뫾ڼ˜«9 >ä<¯²5íý¾á¿½O>ÌúÉÛ‹>Éã<Ò•¨(;¾Ùø"6Ÿ4>žòRñØDH>Öqyµ23¾â .#ÂÄO>à~âé> ¾Íñh¶¢3¼¾ÂîWHÖ >Ý€ïöÛ5¾á‚1ÍOaÿ>Øèæ[q^!¾­yì?FRv¾ÒÄ÷úá>àΑ¾Þ³UA()>΄ 0ׂ>»8ñkþS¾ÙPÇ=œ1>ßëÊ T×¾×Ü`¤Õ?>´iÁ¼;Å«>Ï1‚;;±ì¾ÜÇ+êàÅ>Ü—¥ªRFоÎÈáms­‡¾²6»è]¼R>ÖëC#‡O¾Ý!ÎY,è˜>ÖÓ겎¼?¾¹Å„£c;ɳÐÈ(DE>Ù»/©eվڤ߼^s>ÎΣ,Ó[>¥[Û4ã¾Ó#H²¼2>Ú›vˈ`¾Õк¾ú!'>¼²¢^>Äìí%Ýnf¾×¥Rî¬Ø>ØÖ(+cxì¾Î¢p‚•Ô¾$5ˆHY>Гà…³O¾ØOtY㢠>ÔÓGµk)¾¿¥þ(v]˾ÀÀÀAeiµ>ÔŽÓ2yQö¾×'mf‘´ò>ÎMGSP¼3¾xv¶ž«™¾Ì› Ëê9q>Ö6vöÃC¾ÓÜ"¤íh¯>ÀüðªZNk>º2DnÕX¿¾ÒYn²ê¹m>Õ•@'Ÿð¾Í×Ô|ÇH2>™-â5±>ÈŒv`ë̾ÔJäÏG[>ÒëWk'uܾÁã¶KŽg[¾³ÆŽ-íp‹>ÐYx2A¤¾Ô¶De‚ >ÍHHFΣ¾¤§aû»1–¾Äë„Sì\>Ò…L^ÎV¾Ò'9DcD>‘• 㜬>¬A5žDd¾Í%„#Ô|>Ò»Rœ?x¾Ì£[sÛè³>«ŒgHí%>Áªx’¸²Þ¾Ðã‰üØ>Ñk56|/¾Ãý”‘¥µ¾¢Ln˜ö)>ÉÂ6ŸåV¾Ñnñ?‹µ/>Ëíx[:J;¾°³ƒÍ1û¸¾½{—ÕY¨>ÎÂ{ŸD(K¾Ð@=žHå¸>ÃbòÙ.Â>“ žË” ¾Æ½/‡©S#>Ð5º< Ë×¾Ë)®cèž>³,CKùF>¸7‹Ó¤ª¾Ëö0 Žÿ>ÎÒÄûL—Á¾Ã“N¦o5m¾l‚o™‘bª>Ãùå0)«Ä¾Î%¿û>Ê[*‘Jl¾µ?Œî¿Õ&¾³xB¶cÐ>É] 6·e¾Í1Å\m >äüP«Šn¾„'_ã ¾Áqãgì>Ëí.zŒ¾Ò¾ÉƒœÔyÑ >¶ù$š~>®_:Ø÷¦ž¾ÆòitÓV>ËœõYëBl¾Ãœ$~]å>–þhS >¾>2¢r¾ÉÜ-Ð’#>È¥Œl2r澸dVï)¾¦¢í[$ë>ıuÈ>¼t¾ÊW•Ѐ>Ã|SºVü¾ Qòák¾¹ùU>>ÇæÌÜTþ¾ÇÂ8e–U¢>¹ˆïêÍÖÍ>ŸMKhÀ¦¾Â—o6Ã7S>È—f×s ¾ÃH‘‚ßž>¤ñ ”;ï,>¶ ¨\â¡¾Æ [ K-´>ÆÛ@u3÷ÿ¾ºoòÿV®¾’°Ou-êÔ>À¡#›uuŒ¾Ç&! 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data group (required keyword) TFIELDS = 3 / number of fields in each row NSIDE = 2048 / Resolution parameter for HEALPIX CREATOR = 'QUAD_RING' / Software creating the FITS file VERSION = '1.3.0 ' / Version of the simulation software MAX-LPOL= 6144 / Maximum multipole l used in map synthesis COMMENT COMMENT ----------------------------------------------- COMMENT Data Description Specific Keywords COMMENT ----------------------------------------------- COMMENT COMMENT contains D_weight for the north hemisphere of HEALPIX COMMENT each ring has to be multiplied by (1+D_weight) COMMENT in order to improve the quadrature when analyzing a map COMMENT COMMENT computed by SVD using DGESDD from Lapack library COMMENT TTYPE1 = 'TEMPERATURE WEIGHTS' / Temperature weights TUNIT1 = '1 ' / unit TFORM1 = '1024D ' MAXVAL1 = 1.634779014281E-01 / maximum value of T weights MINVAL1 = -6.831377479844E-02 / minimum value of T weights COMMENT TTYPE2 = 'Q-POLARISATION WEIGHTS' / Q Polarisation weights TUNIT2 = '1 ' / unit TFORM2 = '1024D ' MAXVAL2 = 1.634779014281E-01 / maximum value of Q weights MINVAL2 = -6.831377479844E-02 / minimum value of Q weights COMMENT TTYPE3 = 'U-POLARISATION WEIGHTS' / U Polarisation weights TUNIT3 = '1 ' / unit TFORM3 = '1024D ' MAXVAL3 = 1.634779014281E-01 / maximum value of U weights MINVAL3 = -6.831377479844E-02 / minimum value of U weights COMMENT END ?ÄìØ P?¿±}ô &ç?œq .Š¿{½N]ýó¿k‰¢ûä ?{:»ºœ¿wƒõ``Q"?hûd?\²Ù¿.ÃuÓë|¿[/†nYè?b”ß¡m¿]3%³ë?Gf÷ Tòq?7«.˜üY¿Pº gc:p?R Rz:a¿G]½œgR?Øâ?ÌÚÖ?;Éê1S8Y¿F" hÞªú?C‹ß$k¬%¿2GLL"@¿Q«K^#?9b$X¡œ¿=¼Õºëp·?5ª› ª¿+ßä’p¿'@¤Š £?4¡ò¶j­™¿3’©¼’ä?$ZW¢¤ùb?ê3.ðg¿),çùýå?0 ü,¢C¿(OyW²~e? ÿ¹æqt?Òwï}å¿'sÚûV*?'“ðöšŸî¿¹-Öb'Ú¾ëß²n+¯?Zyòç.u¿#ük”Ša,? 2yGeê¿sÃ)0:‰¿ ÙpTÌŽ?É»õ/w¿“ËÔb l?FXBmåH>­¨6¼§.¿¨l$±?l $¿ìŽ(–`0?Ä¢¸ÛúË?/Ý‹´Z—¿Iº®0?¢ í™V™¿ †ù:)›±>Ëe¾¯Hß? 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contain extensions DATE = '2002-11-30' / Creation UTC (CCCC-MM-DD) date of FITS header COMMENT FITS (Flexible Image Transport System) format is defined in 'Astronomy COMMENT and Astrophysics', volume 376, page 359; bibcode 2001A&A...376..359H END XTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / 8-bit bytes NAXIS = 2 / 2-dimensional binary table NAXIS1 = 16 / width of table in bytes NAXIS2 = 8193 / number of rows in table PCOUNT = 0 / size of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 2 / number of fields in each row COMMENT EXTNAME = 'PIXEL WINDOW' / NSIDE = 2048 / Resolution parameter for HEALPIX MAX-LPOL= 8192 / Maximum multipole l=4*nside COMMENT COMMENT COMMENT COMMENT Contains pixel window smoothing factors COMMENT for temperature and polarization for NSIDE = 2048 COMMENT for multipoles in range [0, 8192] COMMENT TTYPE1 = 'TEMPERATURE' / TEMPERATURE pixel window smoothing factors TFORM1 = '1D ' / data format of field: 8-byte REAL TUNIT1 = 'unknown ' / no unit COMMENT TTYPE2 = 'POLARIZATION' / POLARIZATION pixel window smoothing factors TFORM2 = '1D ' / data format of field: 8-byte REAL TUNIT2 = 'unknown ' / no unit HISTORY HISTORY For NSIDE <= 128, the T and P windows are computed exactly HISTORY by averaging the individual pixel windows. HISTORY For NSIDE > 128 : HISTORY * The average T window is extrapolated from smaller NSIDE HISTORY assuming a scaling of the window function with the pixel radius HISTORY similar to the one exhibited by a tophat window HISTORY * The P window is assumed proportional to T HISTORY E. 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“n?ܱ};H•=?ܯêí†f?ܯê,\?Ü®Vý?ª?Ü®W\YÈ?ܬÃ蜦ž?ܬÃðÚLä?Ü«0Øi¦Ø?Ü«0à¦ÙH?ܩ̆#,?Ü©ÔÂáÈ?ܨ Äóp?ܨ Í/P8?ܦwÁ±:+?ܦwÉí!?ܤäÂË‘¾?ܤäËôã?Ü£QÈDët?Ü£QÐÚÉ?Ü¡¾Ò½ñ?Ü¡¾ÚO9x?Ü +à;í?Ü +èuôÌ?Üž˜ò»b-?Üž˜úôö?Ü ”‰?ÜÍ&¬?Ü›s$ƾî?Ü›s,ÿkH?Ü™àDTw"?Ü™àLŒ¯³?ܘMh>|?ܘMpuÛFhealpy-1.8.1/healpy/data/pixel_window_n0032.fits0000650000175000017530000002070011705033043022016 0ustar zoncaplanck00000000000000SIMPLE = T / Written by IDL: Fri Nov 29 16:12:11 2002 BITPIX = 16 / Number of bits per data pixel NAXIS = 0 / Number of data axes EXTEND = T / FITS data may contain extensions DATE = '2002-11-30' / Creation UTC (CCCC-MM-DD) date of FITS header COMMENT FITS (Flexible Image Transport System) format is defined in 'Astronomy COMMENT and Astrophysics', volume 376, page 359; bibcode 2001A&A...376..359H END XTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / 8-bit bytes NAXIS = 2 / 2-dimensional binary table NAXIS1 = 16 / width of table in bytes NAXIS2 = 129 / number of rows in table PCOUNT = 0 / size of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 2 / number of fields in each row COMMENT EXTNAME = 'PIXEL WINDOW' / NSIDE = 32 / Resolution parameter for HEALPIX MAX-LPOL= 128 / Maximum multipole l=4*nside COMMENT COMMENT COMMENT COMMENT Contains pixel window smoothing factors COMMENT for temperature and polarization for NSIDE = 32 COMMENT for multipoles in range [0, 128] COMMENT TTYPE1 = 'TEMPERATURE' / TEMPERATURE pixel window smoothing factors TFORM1 = '1D ' / data format of field: 8-byte REAL TUNIT1 = 'unknown ' / no unit COMMENT TTYPE2 = 'POLARIZATION' / POLARIZATION pixel window smoothing factors TFORM2 = '1D ' / data format of field: 8-byte REAL TUNIT2 = 'unknown ' / no unit HISTORY HISTORY For NSIDE <= 128, the T and P windows are computed exactly HISTORY by averaging the individual pixel windows. HISTORY For NSIDE > 128 : HISTORY * The average T window is extrapolated from smaller NSIDE HISTORY assuming a scaling of the window function with the pixel radius HISTORY similar to the one exhibited by a tophat window HISTORY * The P window is assumed proportional to T HISTORY E. 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of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 3 / number of fields in each row NSIDE = 4 / Resolution parameter for HEALPIX CREATOR = 'QUAD_RING' / Software creating the FITS file VERSION = '1.3.0 ' / Version of the simulation software MAX-LPOL= 8 / Maximum multipole l used in map synthesis COMMENT COMMENT ----------------------------------------------- COMMENT Data Description Specific Keywords COMMENT ----------------------------------------------- COMMENT COMMENT contains D_weight for the north hemisphere of HEALPIX COMMENT each ring has to be multiplied by (1+D_weight) COMMENT in order to improve the quadrature when analyzing a map COMMENT COMMENT computed by SVD using DGESDD from Lapack library COMMENT TTYPE1 = 'TEMPERATURE WEIGHTS' / Temperature weights TUNIT1 = '1 ' / unit TFORM1 = '1D ' MAXVAL1 = 1.198278418678E-01 / maximum value of T weights MINVAL1 = -1.931310224103E-02 / minimum value of T weights COMMENT TTYPE2 = 'Q-POLARISATION WEIGHTS' / Q Polarisation weights TUNIT2 = '1 ' / unit TFORM2 = '1D ' MAXVAL2 = 1.198278418678E-01 / maximum value of Q weights MINVAL2 = -1.931310224103E-02 / minimum value of Q weights COMMENT TTYPE3 = 'U-POLARISATION WEIGHTS' / U Polarisation weights TUNIT3 = '1 ' / unit TFORM3 = '1D ' MAXVAL3 = 1.198278418678E-01 / maximum value of U weights MINVAL3 = -1.931310224103E-02 / minimum value of U weights COMMENT END ?¾­ •ù“?¾­ •ù“?¾­ •ù“¿z¶î¦îU¿z¶î¦îU¿z¶î¦îU¿“ÆÐZ Äf¿“ÆÐZ Äf¿“ÆÐZ Äf¿~aFηk¤¿~aFηk¤¿~aFηk¤¿q0y$Žã~¿q0y$Žã~¿q0y$Žã~¿jžb¤v´\¿jžb¤v´\¿jžb¤v´\?,£C±0Û?,£C±0Û?,£C±0Û?sï5»áô?sï5»áô?sï5»áôhealpy-1.8.1/healpy/data/pixel_window_n0512.fits0000650000175000017530000011660011705033043022026 0ustar zoncaplanck00000000000000SIMPLE = T / Written by IDL: Fri Nov 29 16:12:11 2002 BITPIX = 16 / Number of bits per data pixel NAXIS = 0 / Number of data axes EXTEND = T / FITS data may contain extensions DATE = '2002-11-30' / Creation UTC (CCCC-MM-DD) date of FITS header COMMENT FITS (Flexible Image Transport System) format is defined in 'Astronomy COMMENT and Astrophysics', volume 376, page 359; bibcode 2001A&A...376..359H END XTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / 8-bit bytes NAXIS = 2 / 2-dimensional binary table NAXIS1 = 16 / width of table in bytes NAXIS2 = 2049 / number of rows in table PCOUNT = 0 / size of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 2 / number of fields in each row COMMENT EXTNAME = 'PIXEL WINDOW' / NSIDE = 512 / Resolution parameter for HEALPIX MAX-LPOL= 2048 / Maximum multipole l=4*nside COMMENT COMMENT COMMENT COMMENT Contains pixel window smoothing factors COMMENT for temperature and polarization for NSIDE = 512 COMMENT for multipoles in range [0, 2048] COMMENT TTYPE1 = 'TEMPERATURE' / TEMPERATURE pixel window smoothing factors TFORM1 = '1D ' / data format of field: 8-byte REAL TUNIT1 = 'unknown ' / no unit COMMENT TTYPE2 = 'POLARIZATION' / POLARIZATION pixel window smoothing factors TFORM2 = '1D ' / data format of field: 8-byte REAL TUNIT2 = 'unknown ' / no unit HISTORY HISTORY For NSIDE <= 128, the T and P windows are computed exactly HISTORY by averaging the individual pixel windows. 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ÖoxåC¿%S4?Á:_¿%S4?Á:_¿%S4?Á:_?(’hòwY?(’hòwY?(’hòwY¿°g*J†¿°g*J†¿°g*J†¾þV»£*71¾þV»£*71¾þV»£*71?#Ê—ŽA£s?#Ê—ŽA£s?#Ê—ŽA£s¿(«‹—=òF¿(«‹—=òF¿(«‹—=òF?6ž¶ ûË?6ž¶ ûË?6ž¶ ûË>òµi©Ô>òµi©Ô>òµi©Ô¿"õ—¶Y¿"õ—¶Y¿"õ—¶Y?(£ŠJÝ”Ü?(£ŠJÝ”Ü?(£ŠJݔܿ·Ã¿ø¯6¿·Ã¿ø¯6¿·Ã¿ø¯6¾õ›×ëƒØ;¾õ›×ëƒØ;¾õ›×ëƒØ;?$¼6€=?$¼6€=?$¼6€=¿,"6ºy“B¿,"6ºy“B¿,"6ºy“Bhealpy-1.8.1/healpy/pixelfunc.py0000644000175000017500000013266012351601276017115 0ustar zoncazonca00000000000000# # This file is part of Healpy. # # Healpy is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # Healpy is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with Healpy; if not, write to the Free Software # Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA # # For more information about Healpy, see http://code.google.com/p/healpy # """ ===================================================== pixelfunc.py : Healpix pixelization related functions ===================================================== This module provides functions related to Healpix pixelization scheme. conversion from/to sky coordinates ---------------------------------- - :func:`pix2ang` converts pixel number to angular coordinates - :func:`pix2vec` converts pixel number to unit 3-vector direction - :func:`ang2pix` converts angular coordinates to pixel number - :func:`vec2pix` converts 3-vector to pixel number - :func:`vec2ang` converts 3-vector to angular coordinates - :func:`ang2vec` converts angular coordinates to unit 3-vector - :func:`get_neighbours` returns the 4 nearest pixels for given angular coordinates - :func:`get_all_neighbours` return the 8 nearest pixels for given angular coordinates conversion between NESTED and RING schemes ------------------------------------------ - :func:`nest2ring` converts NESTED scheme pixel numbers to RING scheme pixel number - :func:`ring2nest` converts RING scheme pixel number to NESTED scheme pixel number - :func:`reorder` reorders a healpix map pixels from one scheme to another nside/npix/resolution --------------------- - :func:`nside2npix` converts healpix nside parameter to number of pixel - :func:`npix2nside` converts number of pixel to healpix nside parameter - :func:`nside2resol` converts nside to mean angular resolution - :func:`nside2pixarea` converts nside to pixel area - :func:`isnsideok` checks the validity of nside - :func:`isnpixok` checks the validity of npix - :func:`get_map_size` gives the number of pixel of a map - :func:`get_min_valid_nside` gives the minimum nside possible for a given number of pixel - :func:`get_nside` returns the nside of a map - :func:`maptype` checks the type of a map (one map or sequence of maps) - :func:`ud_grade` upgrades or degrades the resolution (nside) of a map Masking pixels -------------- - :const:`UNSEEN` is a constant value interpreted as a masked pixel - :func:`mask_bad` returns a map with ``True`` where map is :const:`UNSEEN` - :func:`mask_good` returns a map with ``False`` where map is :const:`UNSEEN` - :func:`ma` returns a masked array as map, with mask given by :func:`mask_bad` Map data manipulation --------------------- - :func:`fit_dipole` fits a monopole+dipole on the map - :func:`fit_monopole` fits a monopole on the map - :func:`remove_dipole` fits and removes a monopole+dipole from the map - :func:`remove_monopole` fits and remove a monopole from the map - :func:`get_interp_val` computes a bilinear interpolation of the map at given angular coordinates, using 4 nearest neighbours """ import numpy as np from . import _healpy_pixel_lib as pixlib from functools import wraps #: Special value used for masked pixels UNSEEN = pixlib.UNSEEN # We are using 64-bit integer types. # nside > 2**29 requires extended integer types. max_nside = 1 << 29 __all__ = ['pix2ang', 'pix2vec', 'ang2pix', 'vec2pix', 'ang2vec', 'vec2ang', 'get_neighbours', 'get_interp_val', 'get_all_neighbours', 'max_pixrad', 'nest2ring', 'ring2nest', 'reorder', 'ud_grade', 'UNSEEN', 'mask_good', 'mask_bad', 'ma', 'fit_dipole', 'remove_dipole', 'fit_monopole', 'remove_monopole', 'nside2npix', 'npix2nside', 'nside2resol', 'nside2pixarea', 'isnsideok', 'isnpixok', 'get_map_size', 'get_min_valid_nside', 'get_nside', 'maptype', 'ma_to_array'] def check_theta_valid(theta): """Raises exception if theta is not within 0 and pi""" assert (np.asarray(theta) >= 0).all() & (np.asarray(theta) <= np.pi + 1e-5).all(), "Theta is defined between 0 and pi" def maptype(m): """Describe the type of the map (valid, single, sequence of maps). Checks : the number of maps, that all maps have same length and that this length is a valid map size (using :func:`isnpixok`). Parameters ---------- m : sequence the map to get info from Returns ------- info : int -1 if the given object is not a valid map, 0 if it is a single map, *info* > 0 if it is a sequence of maps (*info* is then the number of maps) Examples -------- >>> import healpy as hp >>> hp.pixelfunc.maptype(np.arange(12)) 0 >>> hp.pixelfunc.maptype([np.arange(12), np.arange(12)]) 2 """ if not hasattr(m, '__len__'): raise TypeError('input map is a scalar') if len(m) == 0: raise TypeError('input map has length zero') if hasattr(m[0], '__len__'): npix=len(m[0]) for mm in m[1:]: if len(mm) != npix: raise TypeError('input maps have different npix') if isnpixok(len(m[0])): return len(m) else: raise TypeError('bad number of pixels') else: if isnpixok(len(m)): return 0 else: raise TypeError('bad number of pixels') def ma_to_array(m): """Converts a masked array or a list of masked arrays to filled numpy arrays Parameters ---------- m : a map (may be a sequence of maps) Returns ------- m : filled map or tuple of filled maps Examples -------- >>> import healpy as hp >>> m = hp.ma(np.array([2., 2., 3, 4, 5, 0, 0, 0, 0, 0, 0, 0])) >>> m.mask = np.array([0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], dtype=np.bool) >>> print(m.data[1]) # data is not affected by mask 2.0 >>> print(m[1]) # shows that the value is masked -- >>> print(ma_to_array(m)[1]) # filled array, masked values replace by UNSEEN -1.6375e+30 """ try: return m.filled() except AttributeError: try: return tuple([mm.filled() for mm in m]) except AttributeError: pass return m def is_ma(m): """Converts a masked array or a list of masked arrays to filled numpy arrays Parameters ---------- m : a map (may be a sequence of maps) Returns ------- is_ma : bool whether the input map was a ma or not """ return hasattr(m, 'filled') or hasattr(m[0], 'filled') def accept_ma(f): """Wraps a function in order to convert the input map from a masked to a regular numpy array, and convert back the output from a regular array to a masked array""" @wraps(f) def wrapper(*args, **kwds): return_ma = is_ma(args[0]) m = ma_to_array(args[0]) out = f(m, *args[1:], **kwds) return ma(out) if return_ma else out return wrapper def mask_bad(m, badval = UNSEEN, rtol = 1.e-5, atol = 1.e-8): """Returns a bool array with ``True`` where m is close to badval. Parameters ---------- m : a map (may be a sequence of maps) badval : float, optional The value of the pixel considered as bad (:const:`UNSEEN` by default) rtol : float, optional The relative tolerance atol : float, optional The absolute tolerance Returns ------- mask a bool array with the same shape as the input map, ``True`` where input map is close to badval, and ``False`` elsewhere. See Also -------- mask_good, ma Examples -------- >>> import healpy as hp >>> import numpy as np >>> m = np.arange(12.) >>> m[3] = hp.UNSEEN >>> hp.mask_bad(m) array([False, False, False, True, False, False, False, False, False, False, False, False], dtype=bool) """ m = np.asarray(m) atol = np.absolute(atol) rtol = np.absolute(rtol) return np.absolute(m - badval) <= atol + rtol * np.absolute(badval) def mask_good(m, badval = UNSEEN, rtol = 1.e-5, atol = 1.e-8): """Returns a bool array with ``False`` where m is close to badval. Parameters ---------- m : a map (may be a sequence of maps) badval : float, optional The value of the pixel considered as bad (:const:`UNSEEN` by default) rtol : float, optional The relative tolerance atol : float, optional The absolute tolerance Returns ------- a bool array with the same shape as the input map, ``False`` where input map is close to badval, and ``True`` elsewhere. See Also -------- mask_bad, ma Examples -------- >>> import healpy as hp >>> m = np.arange(12.) >>> m[3] = hp.UNSEEN >>> hp.mask_good(m) array([ True, True, True, False, True, True, True, True, True, True, True, True], dtype=bool) """ m = np.asarray(m) atol = np.absolute(atol) rtol = np.absolute(rtol) return np.absolute(m - badval) > atol + rtol * np.absolute(badval) def ma(m, badval = UNSEEN, rtol = 1e-5, atol = 1e-8, copy = True): """Return map as a masked array, with ``badval`` pixels masked. Parameters ---------- m : a map (may be a sequence of maps) badval : float, optional The value of the pixel considered as bad (:const:`UNSEEN` by default) rtol : float, optional The relative tolerance atol : float, optional The absolute tolerance copy : bool, optional If ``True``, a copy of the input map is made. Returns ------- a masked array with the same shape as the input map, masked where input map is close to badval. See Also -------- mask_good, mask_bad, numpy.ma.masked_values Examples -------- >>> import healpy as hp >>> m = np.arange(12.) >>> m[3] = hp.UNSEEN >>> hp.ma(m) masked_array(data = [0.0 1.0 2.0 -- 4.0 5.0 6.0 7.0 8.0 9.0 10.0 11.0], mask = [False False False True False False False False False False False False], fill_value = -1.6375e+30) """ if maptype(m) == 0: return np.ma.masked_values(m, badval, rtol = rtol, atol = atol, copy = copy) else: return tuple([ma(mm) for mm in m]) def ang2pix(nside,theta,phi,nest=False): """ang2pix : nside,theta[rad],phi[rad],nest=False -> ipix (default:RING) Parameters ---------- nside : int, scalar or array-like The healpix nside parameter, must be a power of 2, less than 2**30 theta, phi : float, scalars or array-like Angular coordinates of a point on the sphere nest : bool, optional if True, assume NESTED pixel ordering, otherwise, RING pixel ordering Returns ------- pix : int or array of int The healpix pixel numbers. Scalar if all input are scalar, array otherwise. Usual numpy broadcasting rules apply. See Also -------- pix2ang, pix2vec, vec2pix Examples -------- >>> import healpy as hp >>> hp.ang2pix(16, np.pi/2, 0) 1440 >>> hp.ang2pix(16, [np.pi/2, np.pi/4, np.pi/2, 0, np.pi], [0., np.pi/4, np.pi/2, 0, 0]) array([1440, 427, 1520, 0, 3068]) >>> hp.ang2pix(16, np.pi/2, [0, np.pi/2]) array([1440, 1520]) >>> hp.ang2pix([1, 2, 4, 8, 16], np.pi/2, 0) array([ 4, 12, 72, 336, 1440]) """ check_theta_valid(theta) check_nside(nside) if nest: return pixlib._ang2pix_nest(nside,theta,phi) else: return pixlib._ang2pix_ring(nside,theta,phi) def pix2ang(nside,ipix,nest=False): """pix2ang : nside,ipix,nest=False -> theta[rad],phi[rad] (default RING) Parameters ---------- nside : int or array-like The healpix nside parameter, must be a power of 2, less than 2**30 ipix : int or array-like Pixel indices nest : bool, optional if True, assume NESTED pixel ordering, otherwise, RING pixel ordering Returns ------- theta, phi : float, scalar or array-like The angular coordinates corresponding to ipix. Scalar if all input are scalar, array otherwise. Usual numpy broadcasting rules apply. See Also -------- ang2pix, vec2pix, pix2vec Examples -------- >>> import healpy as hp >>> hp.pix2ang(16, 1440) (1.5291175943723188, 0.0) >>> hp.pix2ang(16, [1440, 427, 1520, 0, 3068]) (array([ 1.52911759, 0.78550497, 1.57079633, 0.05103658, 3.09055608]), array([ 0. , 0.78539816, 1.61988371, 0.78539816, 0.78539816])) >>> hp.pix2ang([1, 2, 4, 8], 11) (array([ 2.30052398, 0.84106867, 0.41113786, 0.2044802 ]), array([ 5.49778714, 5.89048623, 5.89048623, 5.89048623])) """ check_nside(nside) if nest: return pixlib._pix2ang_nest(nside, ipix) else: return pixlib._pix2ang_ring(nside,ipix) def vec2pix(nside,x,y,z,nest=False): """vec2pix : nside,x,y,z,nest=False -> ipix (default:RING) Parameters ---------- nside : int or array-like The healpix nside parameter, must be a power of 2, less than 2**30 x,y,z : floats or array-like vector coordinates defining point on the sphere nest : bool, optional if True, assume NESTED pixel ordering, otherwise, RING pixel ordering Returns ------- ipix : int, scalar or array-like The healpix pixel number corresponding to input vector. Scalar if all input are scalar, array otherwise. Usual numpy broadcasting rules apply. See Also -------- ang2pix, pix2ang, pix2vec Examples -------- >>> import healpy as hp >>> hp.vec2pix(16, 1, 0, 0) 1504 >>> hp.vec2pix(16, [1, 0], [0, 1], [0, 0]) array([1504, 1520]) >>> hp.vec2pix([1, 2, 4, 8], 1, 0, 0) array([ 4, 20, 88, 368]) """ if nest: return pixlib._vec2pix_nest(nside,x,y,z) else: return pixlib._vec2pix_ring(nside,x,y,z) def pix2vec(nside,ipix,nest=False): """pix2vec : nside,ipix,nest=False -> x,y,z (default RING) Parameters ---------- nside : int, scalar or array-like The healpix nside parameter, must be a power of 2, less than 2**30 ipix : int, scalar or array-like Healpix pixel number nest : bool, optional if True, assume NESTED pixel ordering, otherwise, RING pixel ordering Returns ------- x, y, z : floats, scalar or array-like The coordinates of vector corresponding to input pixels. Scalar if all input are scalar, array otherwise. Usual numpy broadcasting rules apply. See Also -------- ang2pix, pix2ang, vec2pix Examples -------- >>> import healpy as hp >>> hp.pix2vec(16, 1504) (0.99879545620517241, 0.049067674327418015, 0.0) >>> hp.pix2vec(16, [1440, 427]) (array([ 0.99913157, 0.5000534 ]), array([ 0. , 0.5000534]), array([ 0.04166667, 0.70703125])) >>> hp.pix2vec([1, 2], 11) (array([ 0.52704628, 0.68861915]), array([-0.52704628, -0.28523539]), array([-0.66666667, 0.66666667])) """ check_nside(nside) if nest: return pixlib._pix2vec_nest(nside,ipix) else: return pixlib._pix2vec_ring(nside,ipix) def ang2vec(theta, phi): """ang2vec : convert angles to 3D position vector Parameters ---------- theta : float, scalar or arry-like colatitude in radians measured southward from north pole (in [0,pi]). phi : float, scalar or array-like longitude in radians measured eastward (in [0, 2*pi]). Returns ------- vec : float, array if theta and phi are vectors, the result is a 2D array with a vector per row otherwise, it is a 1D array of shape (3,) See Also -------- vec2ang, rotator.dir2vec, rotator.vec2dir """ check_theta_valid(theta) if np.any(theta < 0) or np.any(theta > np.pi): raise ValueError('THETA is out of range [0,pi]') sintheta = np.sin(theta) return np.array([sintheta*np.cos(phi), sintheta*np.sin(phi), np.cos(theta)]).T def vec2ang(vectors): """vec2ang: vectors [x, y, z] -> theta[rad], phi[rad] Parameters ---------- vectors : float, array-like the vector(s) to convert, shape is (3,) or (N, 3) Returns ------- theta, phi : float, tuple of two arrays the colatitude and longitude in radians See Also -------- ang2vec, rotator.vec2dir, rotator.dir2vec """ vectors = vectors.reshape(-1,3) dnorm = np.sqrt(np.sum(np.square(vectors),axis=1)) theta = np.arccos(vectors[:,2]/dnorm) phi = np.arctan2(vectors[:,1],vectors[:,0]) phi[phi < 0] += 2*np.pi return theta, phi def ring2nest(nside, ipix): """Convert pixel number from RING ordering to NESTED ordering. Parameters ---------- nside : int, scalar or array-like the healpix nside parameter ipix : int, scalar or array-like the pixel number in RING scheme Returns ------- ipix : int, scalar or array-like the pixel number in NESTED scheme See Also -------- nest2ring, reorder Examples -------- >>> import healpy as hp >>> hp.ring2nest(16, 1504) 1130 >>> hp.ring2nest(2, np.arange(10)) array([ 3, 7, 11, 15, 2, 1, 6, 5, 10, 9]) >>> hp.ring2nest([1, 2, 4, 8], 11) array([ 11, 13, 61, 253]) """ check_nside(nside) return pixlib._ring2nest(nside, ipix) def nest2ring(nside, ipix): """Convert pixel number from NESTED ordering to RING ordering. Parameters ---------- nside : int, scalar or array-like the healpix nside parameter ipix : int, scalar or array-like the pixel number in NESTED scheme Returns ------- ipix : int, scalar or array-like the pixel number in RING scheme See Also -------- ring2nest, reorder Examples -------- >>> import healpy as hp >>> hp.nest2ring(16, 1130) 1504 >>> hp.nest2ring(2, np.arange(10)) array([13, 5, 4, 0, 15, 7, 6, 1, 17, 9]) >>> hp.nest2ring([1, 2, 4, 8], 11) array([ 11, 2, 12, 211]) """ check_nside(nside) return pixlib._nest2ring(nside, ipix) @accept_ma def reorder(map_in, inp=None, out=None, r2n=None, n2r=None): """Reorder an healpix map from RING/NESTED ordering to NESTED/RING Parameters ---------- map_in : array-like the input map to reorder, accepts masked arrays inp, out : ``'RING'`` or ``'NESTED'`` define the input and output ordering r2n : bool if True, reorder from RING to NESTED n2r : bool if True, reorder from NESTED to RING Returns ------- map_out : array-like the reordered map, as masked array if the input was a masked array Notes ----- if ``r2n`` or ``n2r`` is defined, override ``inp`` and ``out``. See Also -------- nest2ring, ring2nest Examples -------- >>> import healpy as hp >>> hp.reorder(np.arange(48), r2n = True) array([13, 5, 4, 0, 15, 7, 6, 1, 17, 9, 8, 2, 19, 11, 10, 3, 28, 20, 27, 12, 30, 22, 21, 14, 32, 24, 23, 16, 34, 26, 25, 18, 44, 37, 36, 29, 45, 39, 38, 31, 46, 41, 40, 33, 47, 43, 42, 35]) >>> hp.reorder(np.arange(12), n2r = True) array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11]) >>> hp.reorder(hp.ma(np.arange(12)), n2r = True) masked_array(data = [ 0 1 2 3 4 5 6 7 8 9 10 11], mask = False, fill_value = 999999) >>> m = [np.arange(12.), np.arange(12.), np.arange(12.)] >>> m[0][2] = hp.UNSEEN >>> m[1][2] = hp.UNSEEN >>> m[2][2] = hp.UNSEEN >>> m = hp.ma(m) >>> hp.reorder(m, n2r = True) (masked_array(data = [0.0 1.0 -- 3.0 4.0 5.0 6.0 7.0 8.0 9.0 10.0 11.0], mask = [False False True False False False False False False False False False], fill_value = -1.6375e+30) , masked_array(data = [0.0 1.0 -- 3.0 4.0 5.0 6.0 7.0 8.0 9.0 10.0 11.0], mask = [False False True False False False False False False False False False], fill_value = -1.6375e+30) , masked_array(data = [0.0 1.0 -- 3.0 4.0 5.0 6.0 7.0 8.0 9.0 10.0 11.0], mask = [False False True False False False False False False False False False], fill_value = -1.6375e+30) ) """ typ = maptype(map_in) if typ == 0: npix = len(map_in) else: npix = len(map_in[0]) nside = npix2nside(npix) if nside>128: bunchsize = npix/24 else: bunchsize = npix if r2n: inp='RING' out='NEST' if n2r: inp='NEST' out='RING' inp = str(inp).upper()[0:4] out = str(out).upper()[0:4] if inp not in ['RING','NEST'] or out not in ['RING','NEST']: raise ValueError('inp and out must be either RING or NEST') if typ == 0: mapin = [map_in] else: mapin = map_in mapout = [] for m_in in mapin: if inp == out: mapout.append(m_in) elif inp == 'RING': m_out = np.zeros(npix,dtype=type(m_in[0])) for ibunch in range(npix//bunchsize): ipix_n = np.arange(ibunch*bunchsize, (ibunch+1)*bunchsize) ipix_r = nest2ring(nside, ipix_n) m_out[ipix_n] = np.asarray(m_in)[ipix_r] mapout.append(m_out) elif inp == 'NEST': m_out = np.zeros(npix,dtype=type(m_in[0])) for ibunch in range(npix//bunchsize): ipix_r = np.arange(ibunch*bunchsize, (ibunch+1)*bunchsize) ipix_n = ring2nest(nside, ipix_r) m_out[ipix_r] = np.asarray(m_in)[ipix_n] mapout.append(m_out) if typ == 0: return mapout[0] else: return mapout def nside2npix(nside): """Give the number of pixel for the given nside. Parameters ---------- nside : int healpix nside parameter; an exception is raised if nside is not valid (nside must be a power of 2, less than 2**30) Returns ------- npix : int corresponding number of pixels Notes ----- Raise a ValueError exception if nside is not valid. Examples -------- >>> import healpy as hp >>> import numpy as np >>> hp.nside2npix(8) 768 >>> np.all([hp.nside2npix(nside) == 12 * nside**2 for nside in [2**n for n in range(12)]]) True >>> hp.nside2npix(7) Traceback (most recent call last): ... ValueError: 7 is not a valid nside parameter (must be a power of 2, less than 2**30) """ check_nside(nside) return 12*nside**2 def nside2resol(nside, arcmin=False): """Give approximate resolution for nside. Resolution is just the square root of the pixel area, which is a gross approximation given the different pixel shapes Parameters ---------- nside : int healpix nside parameter, must be a power of 2, less than 2**30 arcmin : bool if True, return resolution in arcmin, otherwise in radian Returns ------- resol : float approximate pixel size in radians or arcmin Notes ----- Raise a ValueError exception if nside is not valid. Examples -------- >>> import healpy as hp >>> hp.nside2resol(128, arcmin = True) 27.483891294539248 >>> hp.nside2resol(256) 0.0039973699529159707 >>> hp.nside2resol(7) Traceback (most recent call last): ... ValueError: 7 is not a valid nside parameter (must be a power of 2, less than 2**30) """ check_nside(nside) resol = np.sqrt(nside2pixarea(nside)) if arcmin: resol = np.rad2deg(resol) * 60 return resol def nside2pixarea(nside, degrees=False): """Give pixel area given nside. Parameters ---------- nside : int healpix nside parameter, must be a power of 2, less than 2**30 degrees : bool if True, returns pixel area in square degrees, in square radians otherwise Returns ------- pixarea : float pixel area in square radian or square degree Notes ----- Raise a ValueError exception if nside is not valid. Examples -------- >>> import healpy as hp >>> hp.nside2pixarea(128, degrees = True) 0.2098234113027917 >>> hp.nside2pixarea(256) 1.5978966540475428e-05 >>> hp.nside2pixarea(7) Traceback (most recent call last): ... ValueError: 7 is not a valid nside parameter (must be a power of 2, less than 2**30) """ check_nside(nside) pixarea = 4*np.pi/nside2npix(nside) if degrees: pixarea = np.rad2deg(np.rad2deg(pixarea)) return pixarea def npix2nside(npix): """Give the nside parameter for the given number of pixels. Parameters ---------- npix : int the number of pixels Returns ------- nside : int the nside parameter corresponding to npix Notes ----- Raise a ValueError exception if number of pixel does not correspond to the number of pixel of an healpix map. Examples -------- >>> import healpy as hp >>> hp.npix2nside(768) 8 >>> np.all([hp.npix2nside(12 * nside**2) == nside for nside in [2**n for n in range(12)]]) True >>> hp.npix2nside(1000) Traceback (most recent call last): ... ValueError: Wrong pixel number (it is not 12*nside**2) """ nside = np.sqrt(npix/12.) if nside != np.floor(nside): raise ValueError("Wrong pixel number (it is not 12*nside**2)") nside=int(np.floor(nside)) check_nside(nside) return nside def isnsideok(nside): """Returns :const:`True` if nside is a valid nside parameter, :const:`False` otherwise. Parameters ---------- nside : int, scalar or array-like integer value to be tested Returns ------- ok : bool, scalar or array-like :const:`True` if given value is a valid nside, :const:`False` otherwise. Examples -------- >>> import healpy as hp >>> hp.isnsideok(13) False >>> hp.isnsideok(32) True >>> hp.isnsideok([1, 2, 3, 4, 8, 16]) array([ True, True, False, True, True, True], dtype=bool) """ # we use standard bithacks from http://graphics.stanford.edu/~seander/bithacks.html#DetermineIfPowerOf2 if hasattr(nside, '__len__'): if not isinstance(nside, np.ndarray): nside = np.asarray(nside) return ((nside == nside.astype(np.int)) & (0 < nside) & (nside <= max_nside) & ((nside.astype(np.int) & (nside.astype(np.int) - 1)) == 0)) else: return (nside == int(nside) and 0 < nside <= max_nside and (int(nside) & (int(nside) - 1)) == 0) def check_nside(nside): """Raises exception is nside is not valid""" if not np.all(isnsideok(nside)): raise ValueError("%s is not a valid nside parameter (must be a power of 2, less than 2**30)" % str(nside)) def isnpixok(npix): """Return :const:`True` if npix is a valid value for healpix map size, :const:`False` otherwise. Parameters ---------- npix : int, scalar or array-like integer value to be tested Returns ------- ok : bool, scalar or array-like :const:`True` if given value is a valid number of pixel, :const:`False` otherwise Examples -------- >>> import healpy as hp >>> hp.isnpixok(12) True >>> hp.isnpixok(768) True >>> hp.isnpixok([12, 768, 1002]) array([ True, True, False], dtype=bool) """ if hasattr(npix,'__len__'): nside = np.sqrt(np.asarray(npix)/12.) return isnsideok(nside) else: nside = np.sqrt(npix/12.) return isnsideok(nside) def get_interp_val(m,theta,phi,nest=False): """Return the bi-linear interpolation value of a map using 4 nearest neighbours. Parameters ---------- m : array-like an healpix map, accepts masked arrays theta, phi : float, scalar or array-like angular coordinates of point at which to interpolate the map nest : bool if True, the is assumed to be in NESTED ordering. Returns ------- val : float, scalar or arry-like the interpolated value(s), usual numpy broadcasting rules apply. See Also -------- get_neighbours, get_all_neighbours Examples -------- >>> import healpy as hp >>> hp.get_interp_val(np.arange(12.), np.pi/2, 0) 4.0 >>> hp.get_interp_val(np.arange(12.), np.pi/2, np.pi/2) 5.0 >>> hp.get_interp_val(np.arange(12.), np.pi/2, np.pi/2 + 2*np.pi) 5.0 >>> hp.get_interp_val(np.arange(12.), np.linspace(0, np.pi, 10), 0) array([ 1.5 , 1.5 , 1.5 , 2.20618428, 3.40206143, 5.31546486, 7.94639458, 9.5 , 9.5 , 9.5 ]) """ m2=m.ravel() nside=npix2nside(m2.size) if nest: r=pixlib._get_interpol_nest(nside,theta,phi) else: r=pixlib._get_interpol_ring(nside,theta,phi) p=np.array(r[0:4]) w=np.array(r[4:8]) del r return np.sum(m2[p]*w,0) def get_neighbours(nside,theta,phi=None,nest=False): """Return the 4 nearest pixels and corresponding weights. Parameters ---------- nside : int the healpix nside theta, phi : float, scalar or array-like if phi is not given, theta is interpreted as pixel number, otherwise theta[rad],phi[rad] are angular coordinates nest : bool if ``True``, NESTED ordering, otherwise RING ordering. Returns ------- res : tuple of length 2 contains pixel numbers in res[0] and weights in res[1]. Usual numpy broadcasting rules apply. See Also -------- get_interp_val, get_all_neighbours Examples -------- >>> import healpy as hp >>> hp.get_neighbours(1, 0) (array([0, 1, 4, 5]), array([ 1., 0., 0., 0.])) >>> hp.get_neighbours(1, 0, 0) (array([1, 2, 3, 0]), array([ 0.25, 0.25, 0.25, 0.25])) >>> hp.get_neighbours(1, [0, np.pi/2], 0) (array([[ 1, 4], [ 2, 5], [ 3, 11], [ 0, 8]]), array([[ 0.25, 1. ], [ 0.25, 0. ], [ 0.25, 0. ], [ 0.25, 0. ]])) """ check_nside(nside) if phi == None: theta,phi = pix2ang(nside,theta,nest=nest) if nest: r=pixlib._get_interpol_nest(nside,theta,phi) else: r=pixlib._get_interpol_ring(nside,theta,phi) p=np.array(r[0:4]) w=np.array(r[4:8]) return (p,w) def get_all_neighbours(nside, theta, phi=None, nest=False): """Return the 8 nearest pixels. Parameters ---------- nside : int the nside to work with theta, phi : scalar or array-like if phi is not given or None, theta is interpreted as pixel number, otherwise, theta[rad],phi[rad] are angular coordinates nest : bool if ``True``, pixel number will be NESTED ordering, otherwise RING ordering. Returns ------- ipix : int, array pixel number of the SW, W, NW, N, NE, E, SE and S neighbours, shape is (8,) if input is scalar, otherwise shape is (8, N) if input is of length N. If a neighbor does not exist (it can be the case for W, N, E and S) the corresponding pixel number will be -1. See Also -------- get_neighbours, get_interp_val Examples -------- >>> import healpy as hp >>> hp.get_all_neighbours(1, 4) array([11, 7, 3, -1, 0, 5, 8, -1]) >>> hp.get_all_neighbours(1, np.pi/2, np.pi/2) array([ 8, 4, 0, -1, 1, 6, 9, -1]) """ check_nside(nside) if phi is not None: theta = ang2pix(nside,theta, phi,nest=nest) if nest: r=pixlib._get_neighbors_nest(nside,theta) else: r=pixlib._get_neighbors_ring(nside,theta) res=np.array(r[0:8]) return res def max_pixrad(nside): """Maximum angular distance between any pixel center and its corners Parameters ---------- nside : int the nside to work with Returns ------- rads: double angular distance (in radians) Examples -------- >>> '%.15f' % max_pixrad(1) '0.841068670567930' >>> '%.15f' % max_pixrad(16) '0.066014761432513' """ check_nside(nside) return pixlib._max_pixrad(nside) def fit_dipole(m, nest=False, bad=UNSEEN, gal_cut=0): """Fit a dipole and a monopole to the map, excluding bad pixels. Parameters ---------- m : float, array-like the map to which a dipole is fitted and subtracted, accepts masked maps nest : bool if ``False`` m is assumed in RING scheme, otherwise map is NESTED bad : float bad values of pixel, default to :const:`UNSEEN`. gal_cut : float pixels at latitude in [-gal_cut;+gal_cut] degrees are not taken into account Returns ------- res : tuple of length 2 the monopole value in res[0] and the dipole vector (as array) in res[1] See Also -------- remove_dipole, fit_monopole, remove_monopole """ m=ma_to_array(m) m=np.asarray(m) npix = m.size nside = npix2nside(npix) if nside>128: bunchsize = npix/24 else: bunchsize = npix aa = np.zeros((4,4),dtype=np.float64) v = np.zeros(4,dtype=np.float64) for ibunch in range(npix//bunchsize): ipix = np.arange(ibunch*bunchsize, (ibunch+1)*bunchsize) ipix = ipix[(m.flat[ipix]!=bad) & (np.isfinite(m.flat[ipix]))] x,y,z = pix2vec(nside, ipix, nest) if gal_cut>0: w = (np.abs(z)>=np.sin(gal_cut*np.pi/180)) ipix=ipix[w] x=x[w] y=y[w] z=z[w] del w aa[0,0] += ipix.size aa[1,0] += x.sum() aa[2,0] += y.sum() aa[3,0] += z.sum() aa[1,1] += (x**2).sum() aa[2,1] += (x*y).sum() aa[3,1] += (x*z).sum() aa[2,2] += (y**2).sum() aa[3,2] += (y*z).sum() aa[3,3] += (z**2).sum() v[0] += m.flat[ipix].sum() v[1] += (m.flat[ipix]*x).sum() v[2] += (m.flat[ipix]*y).sum() v[3] += (m.flat[ipix]*z).sum() aa[0,1] = aa[1,0] aa[0,2] = aa[2,0] aa[0,3] = aa[3,0] aa[1,2] = aa[2,1] aa[1,3] = aa[3,1] aa[2,3] = aa[3,2] res = np.dot(np.linalg.inv(aa),v) mono = res[0] dipole = res[1:4] return mono,dipole def remove_dipole(m,nest=False,bad=UNSEEN,gal_cut=0,fitval=False, copy=True,verbose=True): """Fit and subtract the dipole and the monopole from the given map m. Parameters ---------- m : float, array-like the map to which a dipole is fitted and subtracted, accepts masked arrays nest : bool if ``False`` m is assumed in RING scheme, otherwise map is NESTED bad : float bad values of pixel, default to :const:`UNSEEN`. gal_cut : float pixels at latitude in [-gal_cut;+gal_cut] are not taken into account fitval : bool whether to return or not the fitted values of monopole and dipole copy : bool whether to modify input map or not (by default, make a copy) verbose : bool print values of monopole and dipole Returns ------- res : array or tuple of length 3 if fitval is False, returns map with monopole and dipole subtracted, otherwise, returns map (array, in res[0]), monopole (float, in res[1]), dipole_vector (array, in res[2]) See Also -------- fit_dipole, fit_monopole, remove_monopole """ input_ma = is_ma(m) m=ma_to_array(m) m=np.array(m,copy=copy) npix = m.size nside = npix2nside(npix) if nside>128: bunchsize = npix/24 else: bunchsize = npix mono,dipole = fit_dipole(m,nest=nest,bad=bad,gal_cut=gal_cut) for ibunch in range(npix//bunchsize): ipix = np.arange(ibunch*bunchsize, (ibunch+1)*bunchsize) ipix = ipix[(m.flat[ipix]!=bad) & (np.isfinite(m.flat[ipix]))] x,y,z = pix2vec(nside, ipix, nest) m.flat[ipix] -= (dipole[0]*x) m.flat[ipix] -= dipole[1]*y m.flat[ipix] -= dipole[2]*z m.flat[ipix] -= mono if verbose: import rotator as R lon,lat = R.vec2dir(dipole,lonlat=True) amp = np.sqrt((dipole**2).sum()) print( 'monopole: {0:g} dipole: lon: {1:g}, lat: {2:g}, amp: {3:g}' .format(mono, lon, lat, amp)) if is_ma: m = ma(m) if fitval: return m,mono,dipole else: return m def fit_monopole(m,nest=False,bad=pixlib.UNSEEN,gal_cut=0): """Fit a monopole to the map, excluding unseen pixels. Parameters ---------- m : float, array-like the map to which a dipole is fitted and subtracted, accepts masked arrays nest : bool if ``False`` m is assumed in RING scheme, otherwise map is NESTED bad : float bad values of pixel, default to :const:`UNSEEN`. gal_cut : float pixels at latitude in [-gal_cut;+gal_cut] degrees are not taken into account Returns ------- res: float fitted monopole value See Also -------- fit_dipole, remove_monopole, remove_monopole """ m=ma_to_array(m) m=np.asarray(m) npix=m.size nside = npix2nside(npix) if nside>128: bunchsize=npix/24 else: bunchsize=npix aa = v = 0.0 for ibunch in range(npix//bunchsize): ipix = np.arange(ibunch*bunchsize, (ibunch+1)*bunchsize) ipix = ipix[(m.flat[ipix]!=bad) & (np.isfinite(m.flat[ipix]))] x,y,z = pix2vec(nside, ipix, nest) if gal_cut>0: w = (np.abs(z)>=np.sin(gal_cut*np.pi/180)) ipix=ipix[w] x=x[w] y=y[w] z=z[w] del w aa += ipix.size v += m.flat[ipix].sum() mono = v/aa return mono def remove_monopole(m,nest=False,bad=pixlib.UNSEEN,gal_cut=0,fitval=False, copy=True,verbose=True): """Fit and subtract the monopole from the given map m. Parameters ---------- m : float, array-like the map to which a monopole is fitted and subtracted nest : bool if ``False`` m is assumed in RING scheme, otherwise map is NESTED bad : float bad values of pixel, default to :const:`UNSEEN`. gal_cut : float pixels at latitude in [-gal_cut;+gal_cut] are not taken into account fitval : bool whether to return or not the fitted value of monopole copy : bool whether to modify input map or not (by default, make a copy) verbose: bool whether to print values of monopole Returns ------- res : array or tuple of length 3 if fitval is False, returns map with monopole subtracted, otherwise, returns map (array, in res[0]) and monopole (float, in res[1]) See Also -------- fit_dipole, fit_monopole, remove_dipole """ input_ma = is_ma(m) m= ma_to_array(m) m=np.array(m,copy=copy) npix = m.size nside = npix2nside(npix) if nside>128: bunchsize = npix/24 else: bunchsize = npix mono = fit_monopole(m,nest=nest,bad=bad,gal_cut=gal_cut) for ibunch in range(npix//bunchsize): ipix = np.arange(ibunch*bunchsize, (ibunch+1)*bunchsize) ipix = ipix[(m.flat[ipix]!=bad) & (np.isfinite(m.flat[ipix]))] x,y,z = pix2vec(nside, ipix, nest) m.flat[ipix] -= mono if verbose: print('monopole: {0:g}'.format(mono)) if input_ma: m = ma(m) if fitval: return m,mono else: return m def get_map_size(m): """Returns the npix of a given map (implicit or explicit pixelization). If map is a dict type, assumes explicit pixelization: use nside key if present, or use nside attribute if present, otherwise use the smallest valid npix given the maximum key value. otherwise assumes implicit pixelization and returns len(m). Parameters ---------- m : array-like or dict-like a map with implicit (array-like) or explicit (dict-like) pixellization Returns ------- npix : int a valid number of pixel Notes ----- In implicit pixellization, raise a ValueError exception if the size of the input is not a valid pixel number. Examples -------- >>> import healpy as hp >>> m = {0: 1, 1: 1, 2: 1, 'nside': 1} >>> print(hp.get_map_size(m)) 12 >>> m = {0: 1, 767: 1} >>> print(hp.get_map_size(m)) 768 >>> print(hp.get_map_size(np.zeros(12 * 8 ** 2))) 768 """ if isinstance(m, dict): if 'nside' in m: return nside2npix(m['nside']) elif hasattr(ma, 'nside'): return nside2npix(m.nside) else: nside = get_min_valid_nside(max(m.keys())+1) return nside2npix(nside) else: if isnpixok(len(m)): return len(m) else: raise ValueError("Wrong pixel number (it is not 12*nside**2)") def get_min_valid_nside(npix): """Returns the minimum acceptable nside so that npix <= nside2npix(nside). Parameters ---------- npix : int a minimal number of pixel Returns ------- nside : int a valid healpix nside so that 12 * nside ** 2 >= npix Examples -------- >>> import healpy as hp >>> hp.pixelfunc.get_min_valid_nside(355) 8 >>> hp.pixelfunc.get_min_valid_nside(768) 8 """ order = 0.5 * np.log2(npix / 12.) return 2**int(np.ceil(order)) def get_nside(m): """Return the nside of the given map. Parameters ---------- m : sequence the map to get the nside from. Returns ------- nside : int the healpix nside parameter of the map (or sequence of maps) Notes ----- If the input is a sequence of maps, all of them must have same size. If the input is not a valid map (not a sequence, unvalid number of pixels), a TypeError exception is raised. """ typ = maptype(m) if typ == 0: return npix2nside(len(m)) else: return npix2nside(len(m[0])) @accept_ma def ud_grade(map_in,nside_out,pess=False,order_in='RING',order_out=None, power=None, dtype=None): """Upgrade or degrade resolution of a map (or list of maps). in degrading the resolution, ud_grade sets the value of the superpixel as the mean of the children pixels. Parameters ---------- map_in : array-like or sequence of array-like the input map(s) (if a sequence of maps, all must have same size) nside_out : int the desired nside of the output map(s) pess : bool if ``True``, in degrading, reject pixels which contains a bad sub_pixel. Otherwise, estimate average with good pixels order_in, order_out : str pixel ordering of input and output ('RING' or 'NESTED') power : float if non-zero, divide the result by (nside_in/nside_out)**power Examples: power=-2 keeps the sum of the map invariant (useful for hitmaps), power=2 divides the mean by another factor of (nside_in/nside_out)**2 (useful for variance maps) dtype : type the type of the output map Returns ------- map_out : array-like or sequence of array-like the upgraded or degraded map(s) Examples -------- >>> import healpy as hp >>> hp.ud_grade(np.arange(48.), 1) array([ 5.5 , 7.25, 9. , 10.75, 21.75, 21.75, 23.75, 25.75, 36.5 , 38.25, 40. , 41.75]) """ check_nside(nside_out) typ = maptype(map_in) if typ<0: raise TypeError('Invalid map') if typ == 0: m_in = [map_in] else: m_in = map_in mapout = [] if order_out is None: order_out = order_in for m in m_in: if str(order_in).upper()[0:4] == 'RING': m = reorder(m,r2n=True) mout = _ud_grade_core(m,nside_out,pess=pess, power=power, dtype=dtype) if str(order_out).upper()[0:4] == 'RING': mout = reorder(mout,n2r=True) mapout.append(mout) if typ == 0: return mapout[0] else: return mapout def _ud_grade_core(m,nside_out,pess=False,power=None, dtype=None): """Internal routine used by ud_grade. It assumes that the map is NESTED and single (not a list of maps) """ nside_in = get_nside(m) if dtype: type_out = dtype else: type_out = type(m[0]) check_nside(nside_out) npix_in = nside2npix(nside_in) npix_out = nside2npix(nside_out) if power: power = float(power) ratio = (float(nside_out)/float(nside_in))**power else: ratio = 1 if nside_out > nside_in: rat2 = npix_out/npix_in fact = np.ones(rat2, dtype=type_out)*ratio map_out = np.outer(m,fact).reshape(npix_out) elif nside_out < nside_in: rat2 = npix_in/npix_out bads = (mask_bad(m) | (~np.isfinite(m))) hit = np.ones(npix_in,dtype=np.int16) hit[bads] = 0 m[bads] = 0 mr = m.reshape(npix_out,rat2) hit = hit.reshape(npix_out,rat2) map_out = mr.sum(axis=1).astype(type_out) nhit = hit.sum(axis=1) if pess: badout = np.where(nhit != rat2) else: badout = np.where(nhit == 0) if power: nhit /= ratio map_out[nhit!=0] /= nhit[nhit!=0] try: map_out[badout] = UNSEEN m[bads] = UNSEEN except OverflowError: pass else: map_out = m return map_out.astype(type_out) healpy-1.8.1/healpy/projaxes.py0000644000175000017500000011356012346125412016746 0ustar zoncazonca00000000000000# # This file is part of Healpy. # # Healpy is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # Healpy is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with Healpy; if not, write to the Free Software # Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA # # For more information about Healpy, see http://code.google.com/p/healpy # from . import projector as P from . import rotator as R from . import pixelfunc import matplotlib from matplotlib import axes,ticker,colors,cm,lines,cbook,figure import numpy as np from ._healpy_pixel_lib import UNSEEN pi = np.pi dtor = pi/180. class SphericalProjAxes(axes.Axes): """Define a special Axes to take care of spherical projection. Parameters ---------- projection : a SphericalProj class or a class derived from it. type of projection rot : list or string define rotation. See rotator. coord : list or string define coordinate system. See rotator. coordprec : number of digit after floating point for coordinates display. format : format string for value display. Notes ----- Other keywords from Axes (see Axes). """ def __init__(self, ProjClass, *args, **kwds): if not issubclass(ProjClass, P.SphericalProj): raise TypeError("First argument must be a SphericalProj class " "(or derived from)") self.proj = ProjClass(rot = kwds.pop('rot',None), coord = kwds.pop('coord',None), flipconv = kwds.pop('flipconv',None), **kwds.pop('arrayinfo', {})) kwds.setdefault('format','%g') kwds.setdefault('coordprec',2) kwds['aspect'] = 'equal' super(SphericalProjAxes,self).__init__(*args, **kwds) self.axis('off') self.set_autoscale_on(False) xmin,xmax,ymin,ymax = self.proj.get_extent() self.set_xlim(xmin,xmax) self.set_ylim(ymin,ymax) dx,dy = self.proj.ang2xy(pi/2.,1.*dtor,direct=True) self._segment_threshold = 16.*np.sqrt(dx**2+dy**2) self._segment_step_rad = 0.1*pi/180 self._do_border = True self._gratdef = {} self._gratdef['local'] = False self._gratdef['dpar'] = 30. def set_format(self,f): """Set the format string for value display """ self._format=f return f def set_coordprec(self,n): """Set the number of digits after floating point for coord display. """ self._coordprec = n def format_coord(self,x,y): """Format the coordinate for display in status bar. Take projection into account. """ format=self._format+' at ' pos=self.get_lonlat(x,y) if pos is None or np.isnan(pos).any(): return '' lon,lat = np.around(pos,decimals=self._coordprec) val = self.get_value(x,y) if val is None: format = '%s' val = '' elif type(val) is str: format='%s @ ' coordsys = self.proj.coordsysstr if coordsys != '': res=(format+'(%g, %g) in %s')%(val,lon,lat, coordsys[0:3]) else: res=(format+'lon=%g, lat=%g')%(val,lon,lat) return res def get_lonlat(self,x,y): """Get the coordinate in the coord system of the image, in lon/lat in deg. """ lon,lat = self.proj.xy2ang(x,y,lonlat=True) return lon,lat def get_value(self,x,y): """Get the value of the map at position x,y """ if len(self.get_images()) < 1: return None im = self.get_images()[-1] arr=im.get_array() i,j = self.proj.xy2ij(x,y) if i is None or j is None: return None elif arr.mask is not np.ma.nomask and arr.mask[i,j]: return 'UNSEEN' else: return arr[i,j] def projmap(self,map,vec2pix_func,vmin=None,vmax=None,badval=UNSEEN, cmap=None,norm=None,rot=None,coord=None,**kwds): """Project a map on the SphericalProjAxes. Parameters ---------- map : array-like The map to project. vec2pix_func : function The function describing the pixelisation. vmin, vmax : float, scalars min and max value to use instead of min max of the map badval : float The value of the bad pixels cmap : a color map The colormap to use (see matplotlib.cm) rot : sequence In the form (lon, lat, psi) (unit: degree):the center of the map is at (lon, lat) and rotated by angle psi around that direction. coord : {'G', 'E', 'C', None} The coordinate system of the map ('G','E' or 'C'), rotate the map if different from the axes coord syst. Notes ----- Other keywords are transmitted to :func:`matplotlib.Axes.imshow` """ img = self.proj.projmap(map,vec2pix_func,rot=rot,coord=coord) w = ~( np.isnan(img) | np.isinf(img) | pixelfunc.mask_bad(img, badval = badval) ) try: if vmin is None: vmin = img[w].min() except ValueError: vmin = 0. try: if vmax is None: vmax = img[w].max() except ValueError: vmax = 0. if vmin > vmax: vmin = vmax if vmin == vmax: vmin -= 1. vmax += 1. cm,nn = get_color_table(vmin,vmax,img[w],cmap=cmap,norm=norm) ext = self.proj.get_extent() img = np.ma.masked_values(img, badval) aximg = self.imshow(img,extent = ext,cmap=cm,norm=nn, interpolation='nearest',origin='lower', vmin=vmin,vmax=vmax,**kwds) xmin,xmax,ymin,ymax = self.proj.get_extent() self.set_xlim(xmin,xmax) self.set_ylim(ymin,ymax) return img def projplot(self,*args,**kwds): """projplot is a wrapper around :func:`matplotlib.Axes.plot` to take into account the spherical projection. You can call this function as:: projplot(theta, phi) # plot a line going through points at coord (theta, phi) projplot(theta, phi, 'bo') # plot 'o' in blue at coord (theta, phi) projplot(thetaphi) # plot a line going through points at coord (thetaphi[0], thetaphi[1]) projplot(thetaphi, 'bx') # idem but with blue 'x' Parameters ---------- theta, phi : float, array-like Coordinates of point to plot. Can be put into one 2-d array, first line is then *theta* and second line is *phi*. See *lonlat* parameter for unit. fmt : str A format string (see :func:`matplotlib.Axes.plot` for details) lonlat : bool, optional If True, theta and phi are interpreted as longitude and latitude in degree, otherwise, as colatitude and longitude in radian coord : {'E', 'G', 'C', None} The coordinate system of the points, only used if the coordinate coordinate system of the Axes has been defined and in this case, a rotation is performed rot : None or sequence rotation to be applied =(lon, lat, psi) : lon, lat will be position of the new Z axis, and psi is rotation around this axis, all in degree. if None, no rotation is performed direct : bool if True, the rotation to center the projection is not taken into account Notes ----- Other keywords are passed to :func:`matplotlib.Axes.plot`. See Also -------- projscatter, projtext """ fmt = None if len(args) < 1: raise ValueError("No argument given") if len(args) == 1: theta,phi = np.asarray(args[0]) elif len(args) == 2: if type(args[1]) is str: fmt=args[1] theta,phi = np.asarray(args[0]) else: theta,phi = np.asarray(args[0]),np.asarray(args[1]) elif len(args) == 3: if type(args[2]) is not str: raise TypeError("Third argument must be a string") else: theta,phi = np.asarray(args[0]),np.asarray(args[1]) fmt = args[2] else: raise TypeError("Three args maximum") rot=kwds.pop('rot',None) if rot is not None: rot = np.array(np.atleast_1d(rot),copy=1) rot.resize(3) rot[1] = rot[1]-90. coord=self.proj.mkcoord(kwds.pop('coord',None))[::-1] lonlat=kwds.pop('lonlat',False) vec = R.dir2vec(theta,phi,lonlat=lonlat) vec = (R.Rotator(rot=rot,coord=coord,eulertype='Y')).I(vec) x,y = self.proj.vec2xy(vec,direct=kwds.pop('direct',False)) x,y = self._make_segment(x,y,threshold=kwds.pop('threshold', self._segment_threshold)) thelines = [] for xx,yy in zip(x,y): if fmt is not None: linestyle, marker, color = axes._process_plot_format(fmt) kwds.setdefault('linestyle',linestyle) kwds.setdefault('marker',marker) if color is not None: kwds.setdefault('color',color) l = lines.Line2D(xx,yy,**kwds) self.add_line(l) thelines.append(l) return thelines def projscatter(self,theta, phi=None,*args,**kwds): """Projscatter is a wrapper around :func:`matplotlib.Axes.scatter` to take into account the spherical projection. You can call this function as:: projscatter(theta, phi) # plot points at coord (theta, phi) projplot(thetaphi) # plot points at coord (thetaphi[0], thetaphi[1]) Parameters ---------- theta, phi : float, array-like Coordinates of point to plot. Can be put into one 2-d array, first line is then *theta* and second line is *phi*. See *lonlat* parameter for unit. lonlat : bool, optional If True, theta and phi are interpreted as longitude and latitude in degree, otherwise, as colatitude and longitude in radian coord : {'E', 'G', 'C', None}, optional The coordinate system of the points, only used if the coordinate coordinate system of the axes has been defined and in this case, a rotation is performed rot : None or sequence, optional rotation to be applied =(lon, lat, psi) : lon, lat will be position of the new Z axis, and psi is rotation around this axis, all in degree. if None, no rotation is performed direct : bool, optional if True, the rotation to center the projection is not taken into account Notes ----- Other keywords are passed to :func:`matplotlib.Axes.plot`. See Also -------- projplot, projtext """ save_input_data = hasattr(self.figure, 'zoomtool') if save_input_data: input_data = (theta, phi, args, kwds.copy()) if phi is None: theta,phi = np.asarray(theta) else: theta, phi = np.asarray(theta), np.asarray(phi) rot=kwds.pop('rot',None) if rot is not None: rot = np.array(np.atleast_1d(rot),copy=1) rot.resize(3) rot[1] = rot[1]-90. coord=self.proj.mkcoord(kwds.pop('coord',None))[::-1] lonlat=kwds.pop('lonlat',False) vec = R.dir2vec(theta,phi,lonlat=lonlat) vec = (R.Rotator(rot=rot,coord=coord,eulertype='Y')).I(vec) x,y = self.proj.vec2xy(vec,direct=kwds.pop('direct',False)) s = self.scatter(x, y, *args, **kwds) if save_input_data: if not hasattr(self, '_scatter_data'): self._scatter_data = [] self._scatter_data.append((s, input_data)) return s def projtext(self, theta, phi, s, **kwds): """Projtext is a wrapper around :func:`matplotlib.Axes.text` to take into account the spherical projection. Parameters ---------- theta, phi : float, array-like Coordinates of point to plot. Can be put into one 2-d array, first line is then *theta* and second line is *phi*. See *lonlat* parameter for unit. text : str The text to be displayed. lonlat : bool, optional If True, theta and phi are interpreted as longitude and latitude in degree, otherwise, as colatitude and longitude in radian coord : {'E', 'G', 'C', None}, optional The coordinate system of the points, only used if the coordinate coordinate system of the axes has been defined and in this case, a rotation is performed rot : None or sequence, optional rotation to be applied =(lon, lat, psi) : lon, lat will be position of the new Z axis, and psi is rotation around this axis, all in degree. if None, no rotation is performed direct : bool, optional if True, the rotation to center the projection is not taken into account Notes ----- Other keywords are passed to :func:`matplotlib.Axes.text`. See Also -------- projplot, projscatter """ if phi is None: theta,phi = np.asarray(theta) else: theta, phi = np.asarray(theta), np.asarray(phi) rot=kwds.pop('rot',None) if rot is not None: rot = np.array(np.atleast_1d(rot),copy=1) rot.resize(3) rot[1] = rot[1]-90. coord=self.proj.mkcoord(kwds.pop('coord',None))[::-1] lonlat=kwds.pop('lonlat',False) vec = R.dir2vec(theta,phi,lonlat=lonlat) vec = (R.Rotator(rot=rot,coord=coord,eulertype='Y')).I(vec) x,y = self.proj.vec2xy(vec,direct=kwds.pop('direct',False)) return self.text(x,y,s,**kwds) def _make_segment(self,x,y,threshold=None): if threshold is None: threshold = self._segment_threshold x,y=np.atleast_1d(x),np.atleast_1d(y) d2 = np.sqrt((np.roll(x,1)-x)**2+(np.roll(y,1)-y)**2) w=np.where(d2 > threshold)[0] #w=w[w!=0] xx=[] yy=[] if len(w) == 1: x=np.roll(x,-w[0]) y=np.roll(y,-w[0]) xx.append(x) yy.append(y) elif len(w) >= 2: xx.append(x[0:w[0]]) yy.append(y[0:w[0]]) for i in xrange(len(w)-1): xx.append(x[w[i]:w[i+1]]) yy.append(y[w[i]:w[i+1]]) xx.append(x[w[-1]:]) yy.append(y[w[-1]:]) else: xx.append(x) yy.append(y) return xx,yy def get_parallel_interval(self,vx,vy=None,vz=None): """Get the min and max value of theta of the parallel to cover the field of view. Input: - the normalized vector of the direction of the center of the projection, in the reference frame of the graticule. Return: - vmin,vmax : between 0 and pi, vmin max_n_par: dpar = set_prec((pmax-pmin)/dtor,max_n_par/2)*dtor if n_mer > max_n_mer: dmer = set_prec((mmax-mmin)/dtor,max_n_mer/2,nn=1)*dtor if dmer/dpar < 0.2 or dmer/dpar > 5.: dmer = dpar = max(dmer,dpar) vdeg = np.floor(np.around(dpar/dtor,10)) varcmin = (dpar/dtor-vdeg)*60. if verbose: print("The interval between parallels is {0:d} deg {1:.2f}'.".format(vdeg,varcmin)) vdeg = np.floor(np.around(dmer/dtor,10)) varcmin = (dmer/dtor-vdeg)*60. if verbose: print("The interval between meridians is {0:d} deg {1:.2f}'.".format(vdeg,varcmin)) return dpar,dmer class GnomonicAxes(SphericalProjAxes): """Define a gnomonic Axes to handle gnomonic projection. Input: - rot=, coord= : define rotation and coordinate system. See rotator. - coordprec= : number of digit after floating point for coordinates display. - format= : format string for value display. Other keywords from Axes (see Axes). """ def __init__(self,*args,**kwds): kwds.setdefault('coordprec',3) super(GnomonicAxes,self).__init__(P.GnomonicProj, *args,**kwds) self._do_border = False self._gratdef['local'] = True self._gratdef['dpar'] = 1. def projmap(self,map,vec2pix_func,xsize=200,ysize=None,reso=1.5,**kwds): self.proj.set_proj_plane_info(xsize=xsize,ysize=ysize,reso=reso) return super(GnomonicAxes,self).projmap(map,vec2pix_func,**kwds) class HpxGnomonicAxes(GnomonicAxes): def projmap(self,map,nest=False,**kwds): nside = pixelfunc.npix2nside(pixelfunc.get_map_size(map)) f = lambda x,y,z: pixelfunc.vec2pix(nside,x,y,z,nest=nest) xsize = kwds.pop('xsize',200) ysize = kwds.pop('ysize',None) reso = kwds.pop('reso',1.5) return super(HpxGnomonicAxes,self).projmap(map,f,xsize=xsize, ysize=ysize,reso=reso,**kwds) class MollweideAxes(SphericalProjAxes): """Define a mollweide Axes to handle mollweide projection. Input: - rot=, coord= : define rotation and coordinate system. See rotator. - coordprec= : number of digit after floating point for coordinates display. - format= : format string for value display. Other keywords from Axes (see Axes). """ def __init__(self,*args,**kwds): kwds.setdefault('coordprec',2) super(MollweideAxes,self).__init__(P.MollweideProj, *args,**kwds) self.set_xlim(-2.01,2.01) self.set_ylim(-1.01,1.01) def projmap(self,map,vec2pix_func,xsize=800,**kwds): self.proj.set_proj_plane_info(xsize=xsize) img = super(MollweideAxes,self).projmap(map,vec2pix_func,**kwds) self.set_xlim(-2.01,2.01) self.set_ylim(-1.01,1.01) return img class HpxMollweideAxes(MollweideAxes): def projmap(self,map,nest=False,**kwds): nside = pixelfunc.npix2nside(pixelfunc.get_map_size(map)) f = lambda x,y,z: pixelfunc.vec2pix(nside,x,y,z,nest=nest) return super(HpxMollweideAxes,self).projmap(map,f,**kwds) class CartesianAxes(SphericalProjAxes): """Define a cylindrical Axes to handle cylindrical projection. """ def __init__(self,*args,**kwds): kwds.setdefault('coordprec',2) super(CartesianAxes,self).__init__(P.CartesianProj, *args, **kwds) self._segment_threshold = 180 self._segment_step_rad = 0.1*pi/180 self._do_border = True def projmap(self,map,vec2pix_func,xsize=800,ysize=None,lonra=None,latra=None,**kwds): self.proj.set_proj_plane_info(xsize=xsize,ysize=ysize,lonra=lonra,latra=latra) return super(CartesianAxes,self).projmap(map,vec2pix_func,**kwds) class HpxCartesianAxes(CartesianAxes): def projmap(self,map,nest=False,**kwds): nside = pixelfunc.npix2nside(pixelfunc.get_map_size(map)) f = lambda x,y,z: pixelfunc.vec2pix(nside,x,y,z,nest=nest) return super(HpxCartesianAxes,self).projmap(map,f,**kwds) class OrthographicAxes(SphericalProjAxes): """Define an orthographic Axes to handle orthographic projection. Input: - rot=, coord= : define rotation and coordinate system. See rotator. - coordprec= : num of digits after floating point for coordinates display. - format= : format string for value display. Other keywords from Axes (see Axes). """ def __init__(self,*args,**kwds): kwds.setdefault('coordprec',2) super(OrthographicAxes,self).__init__(P.OrthographicProj, *args,**kwds) self._segment_threshold = 0.01 self._do_border = False def projmap(self,map,vec2pix_func,xsize=800,half_sky=False,**kwds): self.proj.set_proj_plane_info(xsize=xsize,half_sky=half_sky) img = super(OrthographicAxes,self).projmap(map,vec2pix_func,**kwds) if half_sky: ratio = 1.01 else: ratio = 2.01 self.set_xlim(-ratio,ratio) self.set_ylim(-1.01,1.01) return img class HpxOrthographicAxes(OrthographicAxes): def projmap(self,map,nest=False,**kwds): nside = pixelfunc.npix2nside(len(map)) f = lambda x,y,z: pixelfunc.vec2pix(nside,x,y,z,nest=nest) return super(HpxOrthographicAxes,self).projmap(map,f,**kwds) ################################################################### # # Table color for mollview and gnomview, ... def get_color_table(vmin,vmax,val,cmap=None,norm=None): # Create color table newjet = create_colormap(cmap) if type(norm) is str: if norm.lower().startswith('log'): norm = LogNorm2(clip=False) elif norm.lower().startswith('hist'): norm = HistEqNorm(clip=False) else: norm = None if norm is None: norm = LinNorm2(clip=False) norm.vmin = vmin norm.vmax = vmax norm.autoscale_None(val) return newjet,norm def create_colormap(cmap): if cmap is not None: return cmap cmap0 = cm.jet newcm = colors.LinearSegmentedColormap('newcm',cmap0._segmentdata, cmap0.N) newcm.set_over(newcm(1.0)) newcm.set_under('w') newcm.set_bad('gray') return newcm ################################################################## # # A Locator that gives the bounds of the interval # class BoundaryLocator(ticker.Locator): def __init__(self,N=2): if N < 2: raise ValueError("Number of locs must be greater than 1") self.Nlocs=N def __call__(self): if matplotlib.__version__ < '0.98': vmin,vmax = self.viewInterval.get_bounds() else: vmin, vmax = self.axis.get_view_interval() locs = vmin + np.arange(self.Nlocs)*(vmax-vmin)/(self.Nlocs-1.) return locs def autoscale(self): self.verify_intervals() vmin,vmax = self.dataInterval.get_bounds() if vmax vmax: raise ValueError("minvalue must be less than or equal to maxvalue") elif vmin==vmax: return 0.0 * val else: if clip: mask = np.ma.getmask(val) val = np.ma.array(np.clip(val.filled(vmax), vmin, vmax), mask=mask) result = np.ma.array(np.interp(val, self.xval, self.yval), mask=np.ma.getmask(val)) result[np.isinf(val.data)] = -np.inf if vtype == 'scalar': result = result[0] return result def inverse(self, value): if not self.scaled(): raise ValueError("Not invertible until scaled") if cbook.iterable(value): vtype='array' val = np.ma.array(value) else: vtype='scalar' val = np.ma.array([value]) result = np.ma.array(self._lininterp(val, self.yval, self.xval), mask=np.ma.getmask(val)) result[np.isinf(val.data)] = -np.inf if vtype == 'scalar': result = result[0] return result def autoscale_None(self, val): changed = False if self.vmin is None: self.vmin = val.min() changed = True if self.vmax is None: self.vmax = val.max() changed = True if changed or self.xval is None or self.yval is None: self._set_xyvals(val) def autoscale(self, val): self.vmin = val.min() self.vmax = val.max() self._set_xyvals(val) def _set_xyvals(self,val): data = np.ma.asarray(val).ravel() w=np.isinf(data.data) if data.mask is not np.ma.nomask: w = w|data.mask data2 = data.data[~w] bins = long(min(data2.size/20, 5000)) if bins < 3: bins=data2.size try: # for numpy 1.1, use new bins format (left and right edges) hist, bins = np.histogram(data2,bins=bins, range=(self.vmin,self.vmax), new=True) except TypeError: # for numpy <= 1.0 or numpy >= 1.2, no new keyword hist, bins = np.histogram(data2,bins=bins, range=(self.vmin,self.vmax)) if bins.size == hist.size+1: # new bins format, remove last point bins = bins[:-1] hist = hist.astype(np.float)/np.float(hist.sum()) self.yval = np.concatenate([[0.], hist.cumsum(), [1.]]) self.xval = np.concatenate([[self.vmin], bins + 0.5*(bins[1]-bins[0]), [self.vmax]]) def _lininterp(self,x,X,Y): if hasattr(x,'__len__'): xtype = 'array' xx=np.asarray(x).astype(np.float) else: xtype = 'scalar' xx=np.asarray([x]).astype(np.float) idx = X.searchsorted(xx) yy = xx*0 yy[idx>len(X)-1] = Y[-1] # over yy[idx<=0] = Y[0] # under wok = np.where((idx>0) & (idx vmax: raise ValueError("minvalue must be less than or equal to maxvalue") elif vmin<=0: raise ValueError("values must all be positive") elif vmin==vmax: return type(value)(0.0 * np.asarray(value)) else: if clip: mask = np.ma.getmask(val) val = np.ma.array(np.clip(val.filled(vmax), vmin, vmax), mask=mask) result = (np.ma.log(val)-np.log(vmin))/(np.log(vmax)-np.log(vmin)) result.data[result.data<0]=0.0 result.data[result.data>1]=1.0 result[np.isinf(val.data)] = -np.inf if result.mask is not np.ma.nomask: result.mask[np.isinf(val.data)] = False if vtype == 'scalar': result = result[0] return result def autoscale_None(self, A): ' autoscale only None-valued vmin or vmax' if self.vmin is None or self.vmax is None: val = np.ma.masked_where(np.isinf(A.data),A) colors.Normalize.autoscale_None(self,val) def inverse(self, value): if not self.scaled(): raise ValueError("Not invertible until scaled") vmin, vmax = float(self.vmin), float(self.vmax) if cbook.iterable(value): val = np.ma.asarray(value) return vmin * np.ma.power((vmax/vmin), val) else: return vmin * np.pow((vmax/vmin), value) ################################################################## # # A normalization class to get linear color table # class LinNorm2(colors.Normalize): """ Normalize a given value to the 0-1 range on a lin scale """ def __call__(self, value, clip=None): if clip is None: clip = self.clip if cbook.iterable(value): vtype = 'array' val = np.ma.asarray(value).astype(np.float) else: vtype = 'scalar' val = np.ma.array([value]).astype(np.float) winf = np.isinf(val.data) val = np.ma.masked_where(winf,val) self.autoscale_None(val) vmin, vmax = float(self.vmin), float(self.vmax) if vmin > vmax: raise ValueError("minvalue must be less than or equal to maxvalue") elif vmin==vmax: return type(value)(0.0 * np.asarray(value)) else: if clip: mask = np.ma.getmask(val) val = np.ma.array(np.clip(val.filled(vmax), vmin, vmax), mask=mask) result = (val-vmin) * (1./(vmax-vmin)) result.data[result.data<0]=0.0 result.data[result.data>1]=1.0 result[winf] = -np.inf if result.mask is not np.ma.nomask: result.mask[winf] = False if vtype == 'scalar': result = result[0] return result def autoscale_None(self, A): ' autoscale only None-valued vmin or vmax' if self.vmin is None or self.vmax is None: val = np.ma.masked_where(np.isinf(A.data),A) colors.Normalize.autoscale_None(self,val) def inverse(self, value): if not self.scaled(): raise ValueError("Not invertible until scaled") vmin, vmax = float(self.vmin), float(self.vmax) if cbook.iterable(value): val = np.ma.asarray(value) return vmin + (vmax-vmin) * val else: return vmin + (vmax-vmin) * value healpy-1.8.1/healpy/cookbook.py0000650000175000017530000000314112120662776017061 0ustar zoncaplanck00000000000000"""Various generic useful functions """ def is_seq(o): """Check if the object is a sequence. Parameters ---------- o : any object The object to check Returns ------- is_seq : bool, scalar True if *o* is a sequence, False otherwise """ return hasattr(o, '__len__') def is_seq_of_seq(o): """Check if the object is a sequence of sequences. No check is done on the sizes of the sequences. Parameters ---------- o : any object The object to check Returns ------- is_seq_of_seq : bool True if *o* is a sequence of sequences, False otherwise. """ if not is_seq(o): return False for s in o: if not is_seq(s): return False return True def is_like2d(o): """Check if *o* is conformable to a 2d array. Parameters ---------- o : any object The object to check Returns ------- is_like2d : bool, scalar True if *o* is conformable to a 2d array, False otherwise. 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cxxsupport/fftpack_support.h \ cxxsupport/fitshandle.h \ cxxsupport/geom_utils.h \ cxxsupport/levels_facilities.h \ cxxsupport/ls_image.h \ cxxsupport/lsconstants.h \ cxxsupport/math_utils.h \ cxxsupport/openmp_support.h \ cxxsupport/paramfile.h \ cxxsupport/planck_rng.h \ cxxsupport/pointing.h \ cxxsupport/rangeset.h \ cxxsupport/rotmatrix.h \ cxxsupport/safe_cast.h \ cxxsupport/safe_ptr.h \ cxxsupport/share_utils.h \ cxxsupport/sse_utils_cxx.h \ cxxsupport/string_utils.h \ cxxsupport/trafos.h \ cxxsupport/vec3.h \ cxxsupport/walltimer.h \ cxxsupport/wigner.h \ cxxsupport/xcomplex.h src_healpix_cxx = \ Healpix_cxx/alm.cc \ Healpix_cxx/alm.h \ Healpix_cxx/alm2map_cxx_module.cc \ Healpix_cxx/alm_fitsio.cc \ Healpix_cxx/alm_fitsio.h \ Healpix_cxx/alm_healpix_tools.cc \ Healpix_cxx/alm_healpix_tools.h \ Healpix_cxx/alm_powspec_tools.cc \ Healpix_cxx/alm_powspec_tools.h \ Healpix_cxx/anafast_cxx_module.cc \ Healpix_cxx/calc_powspec_module.cc \ Healpix_cxx/healpix_base.cc \ 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We just wanted to have am__tar # and am__untar set. test -n "${am_cv_prog_tar_$1}" && break # tar/untar a dummy directory, and stop if the command works. rm -rf conftest.dir mkdir conftest.dir echo GrepMe > conftest.dir/file AM_RUN_LOG([tardir=conftest.dir && eval $am__tar_ >conftest.tar]) rm -rf conftest.dir if test -s conftest.tar; then AM_RUN_LOG([$am__untar /dev/null 2>&1 && break fi done rm -rf conftest.dir AC_CACHE_VAL([am_cv_prog_tar_$1], [am_cv_prog_tar_$1=$_am_tool]) AC_MSG_RESULT([$am_cv_prog_tar_$1])]) AC_SUBST([am__tar]) AC_SUBST([am__untar]) ]) # _AM_PROG_TAR m4_include([m4/libtool.m4]) m4_include([m4/ltoptions.m4]) m4_include([m4/ltsugar.m4]) m4_include([m4/ltversion.m4]) m4_include([m4/lt~obsolete.m4]) m4_include([m4/m4_ax_create_pkgconfig_info.m4]) healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libsharp/0000755000175000017500000000000012351601662024053 5ustar zoncazonca00000000000000healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libsharp/sharp.h0000650000175000017530000000240312255154051025474 0ustar zoncaplanck00000000000000/* * This file is part of libsharp. * * libsharp is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libsharp is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libsharp; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libsharp is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file sharp.h * Interface for the spherical transform library. * * Copyright (C) 2006-2012 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_SHARP_H #define PLANCK_SHARP_H #ifdef __cplusplus #error This header file cannot be included from C++, only from C #endif #include #include "sharp_lowlevel.h" #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libsharp/sharp_ylmgen_c.c0000650000175000017530000001521212255154051027346 0ustar zoncaplanck00000000000000/* * This file is part of libsharp. * * libsharp is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libsharp is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libsharp; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libsharp is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Helper code for efficient calculation of Y_lm(theta,phi=0) * * Copyright (C) 2005-2012 Max-Planck-Society * Author: Martin Reinecke */ #include #include #include "sharp_ylmgen_c.h" #include "c_utils.h" static inline void normalize (double *val, int *scale, double xfmax) { while (fabs(*val)>xfmax) { *val*=sharp_fsmall; ++*scale; } if (*val!=0.) while (fabs(*val)lmax = l_max; gen->mmax = m_max; UTIL_ASSERT(spin>=0,"incorrect spin: must be nonnegative"); UTIL_ASSERT(m_max>=spin,"incorrect m_max: must be >= spin"); UTIL_ASSERT(l_max>=m_max,"incorrect l_max: must be >= m_max"); gen->s = spin; UTIL_ASSERT((sharp_minscale<=0)&&(sharp_maxscale>0), "bad value for min/maxscale"); gen->cf=RALLOC(double,sharp_maxscale-sharp_minscale+1); gen->cf[-sharp_minscale]=1.; for (int m=-sharp_minscale-1; m>=0; --m) gen->cf[m]=gen->cf[m+1]*sharp_fsmall; for (int m=-sharp_minscale+1; m<(sharp_maxscale-sharp_minscale+1); ++m) gen->cf[m]=gen->cf[m-1]*sharp_fbig; gen->m = -1; if (spin==0) { gen->rf = RALLOC(sharp_ylmgen_dbl2,gen->lmax+1); gen->mfac = RALLOC(double,gen->mmax+1); gen->mfac[0] = inv_sqrt4pi; for (int m=1; m<=gen->mmax; ++m) gen->mfac[m] = gen->mfac[m-1]*sqrt((2*m+1.)/(2*m)); gen->root = RALLOC(double,2*gen->lmax+5); gen->iroot = RALLOC(double,2*gen->lmax+5); for (int m=0; m<2*gen->lmax+5; ++m) { gen->root[m] = sqrt(m); gen->iroot[m] = (m==0) ? 0. : 1./gen->root[m]; } } else { gen->m=gen->mlo=gen->mhi=-1234567890; ALLOC(gen->fx,sharp_ylmgen_dbl3,gen->lmax+2); for (int m=0; mlmax+2; ++m) gen->fx[m].f[0]=gen->fx[m].f[1]=gen->fx[m].f[2]=0.; ALLOC(gen->inv,double,gen->lmax+1); gen->inv[0]=0; for (int m=1; mlmax+1; ++m) gen->inv[m]=1./m; ALLOC(gen->flm1,double,2*gen->lmax+1); ALLOC(gen->flm2,double,2*gen->lmax+1); for (int m=0; m<2*gen->lmax+1; ++m) { gen->flm1[m] = sqrt(1./(m+1.)); gen->flm2[m] = sqrt(m/(m+1.)); } ALLOC(gen->prefac,double,gen->mmax+1); ALLOC(gen->fscale,int,gen->mmax+1); double *fac = RALLOC(double,2*gen->lmax+1); int *facscale = RALLOC(int,2*gen->lmax+1); fac[0]=1; facscale[0]=0; for (int m=1; m<2*gen->lmax+1; ++m) { fac[m]=fac[m-1]*sqrt(m); facscale[m]=facscale[m-1]; normalize(&fac[m],&facscale[m],sharp_fbighalf); } for (int m=0; m<=gen->mmax; ++m) { int mlo=gen->s, mhi=m; if (mhiprefac[m]=tfac; gen->fscale[m]=tscale; } DEALLOC(fac); DEALLOC(facscale); } } void sharp_Ylmgen_destroy (sharp_Ylmgen_C *gen) { DEALLOC(gen->cf); if (gen->s==0) { DEALLOC(gen->rf); DEALLOC(gen->mfac); DEALLOC(gen->root); DEALLOC(gen->iroot); } else { DEALLOC(gen->fx); DEALLOC(gen->prefac); DEALLOC(gen->fscale); DEALLOC(gen->flm1); DEALLOC(gen->flm2); DEALLOC(gen->inv); } } void sharp_Ylmgen_prepare (sharp_Ylmgen_C *gen, int m) { if (m==gen->m) return; UTIL_ASSERT(m>=0,"incorrect m"); gen->m = m; if (gen->s==0) { gen->rf[m].f[0] = gen->root[2*m+3]; gen->rf[m].f[1] = 0.; for (int l=m+1; l<=gen->lmax; ++l) { double tmp=gen->root[2*l+3]*gen->iroot[l+1+m]*gen->iroot[l+1-m]; gen->rf[l].f[0] = tmp*gen->root[2*l+1]; gen->rf[l].f[1] = tmp*gen->root[l+m]*gen->root[l-m]*gen->iroot[2*l-1]; } } else { int mlo_=m, mhi_=gen->s; if (mhi_mhi==mhi_) && (gen->mlo==mlo_)); gen->mlo = mlo_; gen->mhi = mhi_; if (!ms_similar) { for (int l=gen->mhi; llmax; ++l) { double t = gen->flm1[l+gen->m]*gen->flm1[l-gen->m] *gen->flm1[l+gen->s]*gen->flm1[l-gen->s]; double lt = 2*l+1; double l1 = l+1; gen->fx[l+1].f[0]=l1*lt*t; gen->fx[l+1].f[1]=gen->m*gen->s*gen->inv[l]*gen->inv[l+1]; t = gen->flm2[l+gen->m]*gen->flm2[l-gen->m] *gen->flm2[l+gen->s]*gen->flm2[l-gen->s]; gen->fx[l+1].f[2]=t*l1*gen->inv[l]; } } gen->preMinus_p = gen->preMinus_m = 0; if (gen->mhi==gen->m) { gen->cosPow = gen->mhi+gen->s; gen->sinPow = gen->mhi-gen->s; gen->preMinus_p = gen->preMinus_m = ((gen->mhi-gen->s)&1); } else { gen->cosPow = gen->mhi+gen->m; gen->sinPow = gen->mhi-gen->m; gen->preMinus_m = ((gen->mhi+gen->m)&1); } } } double *sharp_Ylmgen_get_norm (int lmax, int spin) { const double pi = 3.141592653589793238462643383279502884197; double *res=RALLOC(double,lmax+1); /* sign convention for H=1 (LensPix paper) */ #if 1 double spinsign = (spin>0) ? -1.0 : 1.0; #else double spinsign = 1.0; #endif if (spin==0) { for (int l=0; l<=lmax; ++l) res[l]=1.; return res; } spinsign = (spin&1) ? -spinsign : spinsign; for (int l=0; l<=lmax; ++l) res[l] = (l
  • \ref introduction "Introduction"
  • Programming interface */ /*! \page introduction Introduction to libsharp "SHARP" is an acronym for Spherical HARmonic Package. All user-visible data types and functions in this library start with the prefix "sharp_" to avoid pollution of the global C namespace. libsharp's main functionality is the conversion between maps on the sphere and spherical harmonic coefficients (or a_lm). A map is defined as a set of rings, which in turn consist of individual pixels that
    • all have the same colatitude and
    • are uniformly spaced in azimuthal direction.
    Consequently, a ring is completely defined by
    • its colatitute (in radians)
    • the number of pixels it contains
    • the azimuth (in radians) of the first pixel in the ring
    • the weight that must be multiplied to every pixel during a map analysis (typically the solid angle of a pixel in the ring)
    • the offset of the first ring pixel in the map array
    • the stride between consecutive pixels in the ring.
    The map array is a one-dimensional array of type float or double, which contains the values of all map pixels. It is assumed that the pixels of every ring are stored inside this array in order of increasing azimuth and with the specified stride. Note however that the rings themselves can be stored in any order inside the array. The a_lm array is a one-dimensional array of type complex float or complex double, which contains all spherical harmonic coefficients for a full or partial set of m quantum numbers with 0<=m<=mmax and m<=l<=lmax. There is only one constraint on the internal structure of the array, which is: Index[a_l+1,m] = Index[a_l,m] + stride That means that coefficients with identical m but different l can be interpreted as a one-dimensional array in l with a unique stride. Several functions are provided for efficient index computation in this array; they are documented \ref almgroup "here". Information about a pixelisation of the sphere is stored in objects of type sharp_geom_info. It is possible to create such an object for any supported pixelisation by using the function sharp_make_geometry_info(); however, several easier-to-use functions are \ref geominfogroup "supplied" for generating often-used pixelisations like ECP grids, Gaussian grids, and Healpix grids. Currently, libsharp supports the following kinds of transforms:
    • scalar a_lm to map
    • scalar map to a_lm
    • spin a_lm to map
    • spin map to a_lm
    • scalar a_lm to maps of first derivatives
    libsharp supports shared-memory parallelisation via OpenMP; this feature will be automatically enabled if the compiler supports it. Libsharp will also make use of SSE2 and AVX instructions when compiled for a platform known to support them. Support for MPI-parallel transforms is also available; in this mode, every MPI task must provide a unique subset of the map and a_lm coefficients. The spherical harmonic transforms can be executed on double-precision and single-precision maps and a_lm, but for accuracy reasons the computations will always be performed in double precision. As a consequence, single-precision transforms will most likely not be faster than their double-precision counterparts, but they will require significantly less memory. */ healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libsharp/sharp_almhelpers.c0000650000175000017530000000403612255154051027707 0ustar zoncaplanck00000000000000/* * This file is part of libsharp. * * libsharp is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libsharp is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libsharp; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libsharp is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file sharp_almhelpers.c * Spherical transform library * * Copyright (C) 2008-2013 Max-Planck-Society * \author Martin Reinecke */ #include "sharp_almhelpers.h" #include "c_utils.h" void sharp_make_triangular_alm_info (int lmax, int mmax, int stride, sharp_alm_info **alm_info) { sharp_alm_info *info = RALLOC(sharp_alm_info,1); info->lmax = lmax; info->nm = mmax+1; info->mval = RALLOC(int,mmax+1); info->mvstart = RALLOC(ptrdiff_t,mmax+1); info->stride = stride; info->flags = 0; ptrdiff_t tval = 2*lmax+1; for (ptrdiff_t m=0; m<=mmax; ++m) { info->mval[m] = m; info->mvstart[m] = stride*((m*(tval-m))>>1); } *alm_info = info; } void sharp_make_rectangular_alm_info (int lmax, int mmax, int stride, sharp_alm_info **alm_info) { sharp_alm_info *info = RALLOC(sharp_alm_info,1); info->lmax = lmax; info->nm = mmax+1; info->mval = RALLOC(int,mmax+1); info->mvstart = RALLOC(ptrdiff_t,mmax+1); info->stride = stride; info->flags = 0; for (ptrdiff_t m=0; m<=mmax; ++m) { info->mval[m] = m; info->mvstart[m] = stride*m*(lmax+1); } *alm_info = info; } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libsharp/sharp_vecutil.h0000650000175000017530000000236612255154051027237 0ustar zoncaplanck00000000000000/* * This file is part of libc_utils. * * libc_utils is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libc_utils is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libc_utils; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libc_utils is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file sharp_vecutil.h * Functionality related to vector instruction support * * Copyright (C) 2012 Max-Planck-Society * \author Martin Reinecke */ #ifndef SHARP_VECUTIL_H #define SHARP_VECUTIL_H #if (defined (__AVX__)) #define VLEN 4 #elif (defined (__SSE2__)) #define VLEN 2 #else #define VLEN 1 #endif #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libsharp/sharp_geomhelpers.c0000650000175000017530000002430512255154051030066 0ustar zoncaplanck00000000000000/* * This file is part of libsharp. * * libsharp is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libsharp is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libsharp; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libsharp is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file sharp_geomhelpers.c * Spherical transform library * * Copyright (C) 2006-2012 Max-Planck-Society
    * Copyright (C) 2007-2008 Pavel Holoborodko (for gauss_legendre_tbl) * \author Martin Reinecke \author Pavel Holoborodko */ #include #include "sharp_geomhelpers.h" #include "c_utils.h" #include "ls_fft.h" void sharp_make_weighted_healpix_geom_info (int nside, int stride, const double *weight, sharp_geom_info **geom_info) { const double pi=3.141592653589793238462643383279502884197; ptrdiff_t npix=(ptrdiff_t)nside*nside*12; ptrdiff_t ncap=2*(ptrdiff_t)nside*(nside-1); int nrings=4*nside-1; double *theta=RALLOC(double,nrings); double *weight_=RALLOC(double,nrings); int *nph=RALLOC(int,nrings); double *phi0=RALLOC(double,nrings); ptrdiff_t *ofs=RALLOC(ptrdiff_t,nrings); int *stride_=RALLOC(int,nrings); for (int m=0; m2*nside) ? 4*nside-ring : ring; stride_[m] = stride; if (northring < nside) { theta[m] = 2*asin(northring/(sqrt(6.)*nside)); nph[m] = 4*northring; phi0[m] = pi/nph[m]; ofs[m] = 2*northring*(northring-1)*stride; } else { double fact1 = (8.*nside)/npix; double costheta = (2*nside-northring)*fact1; theta[m] = acos(costheta); nph[m] = 4*nside; if ((northring-nside) & 1) phi0[m] = 0; else phi0[m] = pi/nph[m]; ofs[m] = (ncap + (northring-nside)*nph[m])*stride; } if (northring != ring) /* southern hemisphere */ { theta[m] = pi-theta[m]; ofs[m] = (npix - nph[m])*stride - ofs[m]; } weight_[m]=4.*pi/npix*((weight==NULL) ? 1. : weight[northring-1]); } sharp_make_geom_info (nrings, nph, ofs, stride_, phi0, theta, weight_, geom_info); DEALLOC(theta); DEALLOC(weight_); DEALLOC(nph); DEALLOC(phi0); DEALLOC(ofs); DEALLOC(stride_); } static inline double one_minus_x2 (double x) { return (fabs(x)>0.1) ? (1.+x)*(1.-x) : 1.-x*x; } /* Function adapted from GNU GSL file glfixed.c Original author: Pavel Holoborodko (http://www.holoborodko.com) Adjustments by M. Reinecke - adjusted interface (keep epsilon internal, return full number of points) - removed precomputed tables - tweaked Newton iteration to obtain higher accuracy */ static void gauss_legendre_tbl(int n, double *x, double *w) { const double pi = 3.141592653589793238462643383279502884197; const double eps = 3e-14; int m = (n+1)>>1; double t0 = 1 - (1-1./n) / (8.*n*n); double t1 = 1./(4.*n+2.); #pragma omp parallel { int i; #pragma omp for schedule(dynamic,100) for (i=1; i<=m; ++i) { double x0 = cos(pi * ((i<<2)-1) * t1) * t0; int dobreak=0; int j=0; double dpdx; while(1) { double P_1 = 1.0; double P0 = x0; double dx, x1; for (int k=2; k<=n; k++) { double P_2 = P_1; P_1 = P0; // P0 = ((2*k-1)*x0*P_1-(k-1)*P_2)/k; P0 = x0*P_1 + (k-1.)/k * (x0*P_1-P_2); } dpdx = (P_1 - x0*P0) * n / one_minus_x2(x0); /* Newton step */ x1 = x0 - P0/dpdx; dx = x0-x1; x0 = x1; if (dobreak) break; if (fabs(dx)<=eps) dobreak=1; UTIL_ASSERT(++j<100,"convergence problem"); } x[i-1] = -x0; x[n-i] = x0; w[i-1] = w[n-i] = 2. / (one_minus_x2(x0) * dpdx * dpdx); } } // end of parallel region } void sharp_make_gauss_geom_info (int nrings, int nphi, double phi0, int stride_lon, int stride_lat, sharp_geom_info **geom_info) { const double pi=3.141592653589793238462643383279502884197; double *theta=RALLOC(double,nrings); double *weight=RALLOC(double,nrings); int *nph=RALLOC(int,nrings); double *phi0_=RALLOC(double,nrings); ptrdiff_t *ofs=RALLOC(ptrdiff_t,nrings); int *stride_=RALLOC(int,nrings); gauss_legendre_tbl(nrings,theta,weight); for (int m=0; mpi-1e-15) theta[m]=pi-1e-15; nph[m]=ppring; phi0_[m]=phi0; ofs[m]=(ptrdiff_t)m*stride_lat; stride_[m]=stride_lon; } sharp_make_geom_info (nrings, nph, ofs, stride_, phi0_, theta, NULL, geom_info); DEALLOC(theta); DEALLOC(nph); DEALLOC(phi0_); DEALLOC(ofs); DEALLOC(stride_); } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libsharp/sharp.c0000650000175000017530000005732012255154051025477 0ustar zoncaplanck00000000000000/* * This file is part of libsharp. * * libsharp is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libsharp is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libsharp; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libsharp is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file sharp.c * Spherical transform library * * Copyright (C) 2006-2013 Max-Planck-Society * \author Martin Reinecke \author Dag Sverre Seljebotn */ #include #include "ls_fft.h" #include "sharp_ylmgen_c.h" #include "sharp_internal.h" #include "c_utils.h" #include "sharp_core.h" #include "sharp_vecutil.h" #include "walltime_c.h" #include "sharp_almhelpers.h" #include "sharp_geomhelpers.h" typedef complex double dcmplx; typedef complex float fcmplx; static const double sqrt_one_half = 0.707106781186547572737310929369; static const double sqrt_two = 1.414213562373095145474621858739; static int chunksize_min=500, nchunks_max=10; static void get_chunk_info (int ndata, int nmult, int *nchunks, int *chunksize) { *chunksize = (ndata+nchunks_max-1)/nchunks_max; if (*chunksize>=chunksize_min) // use max number of chunks *chunksize = ((*chunksize+nmult-1)/nmult)*nmult; else // need to adjust chunksize and nchunks { *nchunks = (ndata+chunksize_min-1)/chunksize_min; *chunksize = (ndata+(*nchunks)-1)/(*nchunks); if (*nchunks>1) *chunksize = ((*chunksize+nmult-1)/nmult)*nmult; } *nchunks = (ndata+(*chunksize)-1)/(*chunksize); } int sharp_get_mlim (int lmax, int spin, double sth, double cth) { double ofs=lmax*0.01; if (ofs<100.) ofs=100.; double b = -2*spin*fabs(cth); double t1 = lmax*sth+ofs; double c = (double)spin*spin-t1*t1; double discr = b*b-4*c; if (discr<=0) return lmax; double res=(-b+sqrt(discr))/2.; if (res>lmax) res=lmax; return (int)(res+0.5); } typedef struct { double phi0_; dcmplx *shiftarr, *work; int s_shift, s_work; real_plan plan; int norot; } ringhelper; static void ringhelper_init (ringhelper *self) { static ringhelper rh_null = { 0, NULL, NULL, 0, 0, NULL, 0 }; *self = rh_null; } static void ringhelper_destroy (ringhelper *self) { if (self->plan) kill_real_plan(self->plan); DEALLOC(self->shiftarr); DEALLOC(self->work); ringhelper_init(self); } static void ringhelper_update (ringhelper *self, int nph, int mmax, double phi0) { self->norot = (fabs(phi0)<1e-14); if (!(self->norot)) if ((mmax!=self->s_shift-1) || (!FAPPROX(phi0,self->phi0_,1e-12))) { RESIZE (self->shiftarr,dcmplx,mmax+1); self->s_shift = mmax+1; self->phi0_ = phi0; for (int m=0; m<=mmax; ++m) self->shiftarr[m] = cos(m*phi0) + _Complex_I*sin(m*phi0); } if (!self->plan) self->plan=make_real_plan(nph); if (nph!=(int)self->plan->length) { kill_real_plan(self->plan); self->plan=make_real_plan(nph); } GROW(self->work,dcmplx,self->s_work,nph); } static int ringinfo_compare (const void *xa, const void *xb) { const sharp_ringinfo *a=xa, *b=xb; return (a->sth < b->sth) ? -1 : (a->sth > b->sth) ? 1 : 0; } static int ringpair_compare (const void *xa, const void *xb) { const sharp_ringpair *a=xa, *b=xb; if (a->r1.nph==b->r1.nph) return (a->r1.phi0 < b->r1.phi0) ? -1 : ((a->r1.phi0 > b->r1.phi0) ? 1 : (a->r1.cth>b->r1.cth ? -1 : 1)); return (a->r1.nphr1.nph) ? -1 : 1; } void sharp_make_general_alm_info (int lmax, int nm, int stride, const int *mval, const ptrdiff_t *mstart, int flags, sharp_alm_info **alm_info) { sharp_alm_info *info = RALLOC(sharp_alm_info,1); info->lmax = lmax; info->nm = nm; info->mval = RALLOC(int,nm); info->mvstart = RALLOC(ptrdiff_t,nm); info->stride = stride; info->flags = flags; for (int mi=0; mimval[mi] = mval[mi]; info->mvstart[mi] = mstart[mi]; } *alm_info = info; } void sharp_make_alm_info (int lmax, int mmax, int stride, const ptrdiff_t *mstart, sharp_alm_info **alm_info) { int *mval=RALLOC(int,mmax+1); for (int i=0; i<=mmax; ++i) mval[i]=i; sharp_make_general_alm_info (lmax, mmax+1, stride, mval, mstart, 0, alm_info); DEALLOC(mval); } ptrdiff_t sharp_alm_index (const sharp_alm_info *self, int l, int mi) { UTIL_ASSERT(!(self->flags & SHARP_PACKED), "sharp_alm_index not applicable with SHARP_PACKED alms"); return self->mvstart[mi]+self->stride*l; } void sharp_destroy_alm_info (sharp_alm_info *info) { DEALLOC (info->mval); DEALLOC (info->mvstart); DEALLOC (info); } void sharp_make_geom_info (int nrings, const int *nph, const ptrdiff_t *ofs, const int *stride, const double *phi0, const double *theta, const double *wgt, sharp_geom_info **geom_info) { sharp_geom_info *info = RALLOC(sharp_geom_info,1); sharp_ringinfo *infos = RALLOC(sharp_ringinfo,nrings); int pos=0; info->pair=RALLOC(sharp_ringpair,nrings); info->npairs=0; *geom_info = info; for (int m=0; mpair[info->npairs].r1=infos[pos]; if ((pos0) // make sure northern ring is in r1 info->pair[info->npairs].r2=infos[pos+1]; else { info->pair[info->npairs].r1=infos[pos+1]; info->pair[info->npairs].r2=infos[pos]; } ++pos; } else info->pair[info->npairs].r2.nph=-1; ++pos; ++info->npairs; } DEALLOC(infos); qsort(info->pair,info->npairs,sizeof(sharp_ringpair),ringpair_compare); } void sharp_destroy_geom_info (sharp_geom_info *geom_info) { DEALLOC (geom_info->pair); DEALLOC (geom_info); } /* This currently requires all m values from 0 to nm-1 to be present. It might be worthwhile to relax this criterion such that holes in the m distribution are permissible. */ static int sharp_get_mmax (int *mval, int nm) { int *mcheck=RALLOC(int,nm); SET_ARRAY(mcheck,0,nm,0); for (int i=0; i=0) && (m_curnph; int stride = info->stride; ringhelper_update (self, nph, mmax, info->phi0); self->work[0]=phase[0]; if (nph>=2*mmax+1) { for (int m=1; m<=mmax; ++m) { dcmplx tmp = phase[m*pstride]; if(!self->norot) tmp*=self->shiftarr[m]; self->work[m]=tmp; self->work[nph-m]=conj(tmp); } for (int m=mmax+1; m<(nph-mmax); ++m) self->work[m]=0.; } else { SET_ARRAY(self->work,1,nph,0.); int idx1=1, idx2=nph-1; for (int m=1; m<=mmax; ++m) { dcmplx tmp = phase[m*pstride]; if(!self->norot) tmp*=self->shiftarr[m]; self->work[idx1]+=tmp; self->work[idx2]+=conj(tmp); if (++idx1>=nph) idx1=0; if (--idx2<0) idx2=nph-1; } } real_plan_backward_c (self->plan, (double *)(self->work)); double wgt = (flags&SHARP_USE_WEIGHTS) ? info->weight : 1.; if (flags&SHARP_REAL_HARMONICS) wgt *= sqrt_one_half; if (flags&SHARP_DP) for (int m=0; mofs]+=creal(self->work[m])*wgt; else for (int m=0; mofs] += (float)(creal(self->work[m])*wgt); } static void ringhelper_ring2phase (ringhelper *self, const sharp_ringinfo *info, const void *data, int mmax, dcmplx *phase, int pstride, int flags) { int nph = info->nph; #if 1 int maxidx = mmax; /* Enable this for traditional Healpix compatibility */ #else int maxidx = IMIN(nph-1,mmax); #endif ringhelper_update (self, nph, mmax, -info->phi0); double wgt = (flags&SHARP_USE_WEIGHTS) ? info->weight : 1; if (flags&SHARP_REAL_HARMONICS) wgt *= sqrt_two; if (flags&SHARP_DP) for (int m=0; mwork[m] = ((double *)data)[info->ofs+m*info->stride]*wgt; else for (int m=0; mwork[m] = ((float *)data)[info->ofs+m*info->stride]*wgt; real_plan_forward_c (self->plan, (double *)self->work); if (maxidxnorot) for (int m=0; m<=maxidx; ++m) phase[m*pstride] = self->work[m]; else for (int m=0; m<=maxidx; ++m) phase[m*pstride]=self->work[m]*self->shiftarr[m]; } else { if (self->norot) for (int m=0; m<=maxidx; ++m) phase[m*pstride] = self->work[m%nph]; else for (int m=0; m<=maxidx; ++m) phase[m*pstride]=self->work[m%nph]*self->shiftarr[m]; } for (int m=maxidx+1;m<=mmax; ++m) phase[m*pstride]=0.; } static void ringhelper_pair2phase (ringhelper *self, int mmax, const sharp_ringpair *pair, const void *data, dcmplx *phase1, dcmplx *phase2, int pstride, int flags) { ringhelper_ring2phase (self,&(pair->r1),data,mmax,phase1,pstride,flags); if (pair->r2.nph>0) ringhelper_ring2phase (self,&(pair->r2),data,mmax,phase2,pstride,flags); } static void ringhelper_phase2pair (ringhelper *self, int mmax, const dcmplx *phase1, const dcmplx *phase2, int pstride, const sharp_ringpair *pair, void *data, int flags) { ringhelper_phase2ring (self,&(pair->r1),data,mmax,phase1,pstride,flags); if (pair->r2.nph>0) ringhelper_phase2ring (self,&(pair->r2),data,mmax,phase2,pstride,flags); } static void fill_map (const sharp_geom_info *ginfo, void *map, double value, int flags) { for (int j=0;jnpairs;++j) { if (flags&SHARP_DP) { for (ptrdiff_t i=0;ipair[j].r1.nph;++i) ((double *)map)[ginfo->pair[j].r1.ofs+i*ginfo->pair[j].r1.stride]=value; for (ptrdiff_t i=0;ipair[j].r2.nph;++i) ((double *)map)[ginfo->pair[j].r2.ofs+i*ginfo->pair[j].r2.stride]=value; } else { for (ptrdiff_t i=0;ipair[j].r1.nph;++i) ((float *)map)[ginfo->pair[j].r1.ofs+i*ginfo->pair[j].r1.stride] =(float)value; for (ptrdiff_t i=0;ipair[j].r2.nph;++i) ((float *)map)[ginfo->pair[j].r2.ofs+i*ginfo->pair[j].r2.stride] =(float)value; } } } static void clear_alm (const sharp_alm_info *ainfo, void *alm, int flags) { #define CLEARLOOP(real_t,body) \ { \ real_t *talm = (real_t *)alm; \ for (int l=m;l<=ainfo->lmax;++l) \ body \ } for (int mi=0;minm;++mi) { int m=ainfo->mval[mi]; ptrdiff_t mvstart = ainfo->mvstart[mi]; ptrdiff_t stride = ainfo->stride; if (!(ainfo->flags&SHARP_PACKED)) mvstart*=2; if ((ainfo->flags&SHARP_PACKED)&&(m==0)) { if (flags&SHARP_DP) CLEARLOOP(double, talm[mvstart+l*stride] = 0.;) else CLEARLOOP(float, talm[mvstart+l*stride] = 0.;) } else { stride*=2; if (flags&SHARP_DP) CLEARLOOP(double,talm[mvstart+l*stride]=talm[mvstart+l*stride+1]=0.;) else CLEARLOOP(float,talm[mvstart+l*stride]=talm[mvstart+l*stride+1]=0.;) } #undef CLEARLOOP } } static void init_output (sharp_job *job) { if (job->flags&SHARP_ADD) return; if (job->type == SHARP_MAP2ALM) for (int i=0; intrans*job->nalm; ++i) clear_alm (job->ainfo,job->alm[i],job->flags); else for (int i=0; intrans*job->nmaps; ++i) fill_map (job->ginfo,job->map[i],0.,job->flags); } static void alloc_phase (sharp_job *job, int nm, int ntheta) { if (job->type==SHARP_MAP2ALM) { if ((nm&1023)==0) nm+=3; // hack to avoid critical strides job->s_m=2*job->ntrans*job->nmaps; job->s_th=job->s_m*nm; } else { if ((ntheta&1023)==0) ntheta+=3; // hack to avoid critical strides job->s_th=2*job->ntrans*job->nmaps; job->s_m=job->s_th*ntheta; } job->phase=RALLOC(dcmplx,2*job->ntrans*job->nmaps*nm*ntheta); } static void dealloc_phase (sharp_job *job) { DEALLOC(job->phase); } //FIXME: set phase to zero if not SHARP_MAP2ALM? static void map2phase (sharp_job *job, int mmax, int llim, int ulim) { if (job->type != SHARP_MAP2ALM) return; int pstride = job->s_m; #pragma omp parallel if ((job->flags&SHARP_NO_OPENMP)==0) { ringhelper helper; ringhelper_init(&helper); #pragma omp for schedule(dynamic,1) for (int ith=llim; iths_th*(ith-llim); for (int i=0; intrans*job->nmaps; ++i) ringhelper_pair2phase(&helper,mmax,&job->ginfo->pair[ith], job->map[i], &job->phase[dim2+2*i], &job->phase[dim2+2*i+1], pstride, job->flags); } ringhelper_destroy(&helper); } /* end of parallel region */ } static void alloc_almtmp (sharp_job *job, int lmax) { job->almtmp=RALLOC(dcmplx,job->ntrans*job->nalm*(lmax+1)); } static void dealloc_almtmp (sharp_job *job) { DEALLOC(job->almtmp); } static void alm2almtmp (sharp_job *job, int lmax, int mi) { #define COPY_LOOP(real_t, source_t, expr_of_x) \ for (int l=job->ainfo->mval[mi]; l<=lmax; ++l) \ for (int i=0; intrans*job->nalm; ++i) \ { \ source_t x = *(source_t *)(((real_t *)job->alm[i])+ofs+l*stride); \ job->almtmp[job->ntrans*job->nalm*l+i] = expr_of_x; \ } if (job->type!=SHARP_MAP2ALM) { ptrdiff_t ofs=job->ainfo->mvstart[mi]; int stride=job->ainfo->stride; int m=job->ainfo->mval[mi]; /* in the case of SHARP_REAL_HARMONICS, phase2ring scales all the coefficients by sqrt_one_half; here we must compensate to avoid scaling m=0 */ double norm_m0=(job->flags&SHARP_REAL_HARMONICS) ? sqrt_two : 1.; if (!(job->ainfo->flags&SHARP_PACKED)) ofs *= 2; if (!((job->ainfo->flags&SHARP_PACKED)&&(m==0))) stride *= 2; if (job->spin==0) { if (m==0) { if (job->flags&SHARP_DP) COPY_LOOP(double, double, x*norm_m0) else COPY_LOOP(float, float, x*norm_m0) } else { if (job->flags&SHARP_DP) COPY_LOOP(double, dcmplx, x) else COPY_LOOP(float, fcmplx, x) } } else { if (m==0) { if (job->flags&SHARP_DP) COPY_LOOP(double, double, x*job->norm_l[l]*norm_m0) else COPY_LOOP(float, float, x*job->norm_l[l]*norm_m0) } else { if (job->flags&SHARP_DP) COPY_LOOP(double, dcmplx, x*job->norm_l[l]) else COPY_LOOP(float, fcmplx, x*job->norm_l[l]) } } } else SET_ARRAY(job->almtmp,job->ntrans*job->nalm*job->ainfo->mval[mi], job->ntrans*job->nalm*(lmax+1),0.); #undef COPY_LOOP } static void almtmp2alm (sharp_job *job, int lmax, int mi) { #define COPY_LOOP(real_t, target_t, expr_of_x) \ for (int l=job->ainfo->mval[mi]; l<=lmax; ++l) \ for (int i=0; intrans*job->nalm; ++i) \ { \ dcmplx x = job->almtmp[job->ntrans*job->nalm*l+i]; \ *(target_t *)(((real_t *)job->alm[i])+ofs+l*stride) += expr_of_x; \ } if (job->type != SHARP_MAP2ALM) return; ptrdiff_t ofs=job->ainfo->mvstart[mi]; int stride=job->ainfo->stride; int m=job->ainfo->mval[mi]; /* in the case of SHARP_REAL_HARMONICS, ring2phase scales all the coefficients by sqrt_two; here we must compensate to avoid scaling m=0 */ double norm_m0=(job->flags&SHARP_REAL_HARMONICS) ? sqrt_one_half : 1.; if (!(job->ainfo->flags&SHARP_PACKED)) ofs *= 2; if (!((job->ainfo->flags&SHARP_PACKED)&&(m==0))) stride *= 2; if (job->spin==0) { if (m==0) { if (job->flags&SHARP_DP) COPY_LOOP(double, double, creal(x)*norm_m0) else COPY_LOOP(float, float, crealf(x)*norm_m0) } else { if (job->flags&SHARP_DP) COPY_LOOP(double, dcmplx, x) else COPY_LOOP(float, fcmplx, (fcmplx)x) } } else { if (m==0) { if (job->flags&SHARP_DP) COPY_LOOP(double, double, creal(x)*job->norm_l[l]*norm_m0) else COPY_LOOP(float, fcmplx, (float)(creal(x)*job->norm_l[l]*norm_m0)) } else { if (job->flags&SHARP_DP) COPY_LOOP(double, dcmplx, x*job->norm_l[l]) else COPY_LOOP(float, fcmplx, (fcmplx)(x*job->norm_l[l])) } } #undef COPY_LOOP } static void phase2map (sharp_job *job, int mmax, int llim, int ulim) { if (job->type == SHARP_MAP2ALM) return; int pstride = job->s_m; #pragma omp parallel if ((job->flags&SHARP_NO_OPENMP)==0) { ringhelper helper; ringhelper_init(&helper); #pragma omp for schedule(dynamic,1) for (int ith=llim; iths_th*(ith-llim); for (int i=0; intrans*job->nmaps; ++i) ringhelper_phase2pair(&helper,mmax,&job->phase[dim2+2*i], &job->phase[dim2+2*i+1],pstride,&job->ginfo->pair[ith],job->map[i], job->flags); } ringhelper_destroy(&helper); } /* end of parallel region */ } static void sharp_execute_job (sharp_job *job) { double timer=wallTime(); job->opcnt=0; int lmax = job->ainfo->lmax, mmax=sharp_get_mmax(job->ainfo->mval, job->ainfo->nm); job->norm_l = (job->type==SHARP_ALM2MAP_DERIV1) ? sharp_Ylmgen_get_d1norm (lmax) : sharp_Ylmgen_get_norm (lmax, job->spin); /* clear output arrays if requested */ init_output (job); int nchunks, chunksize; get_chunk_info(job->ginfo->npairs,(job->flags&SHARP_NVMAX)*VLEN,&nchunks, &chunksize); alloc_phase (job,mmax+1,chunksize); /* chunk loop */ for (int chunk=0; chunkginfo->npairs); int *ispair = RALLOC(int,ulim-llim); int *mlim = RALLOC(int,ulim-llim); double *cth = RALLOC(double,ulim-llim), *sth = RALLOC(double,ulim-llim); for (int i=0; iginfo->pair[i+llim].r2.nph>0; cth[i] = job->ginfo->pair[i+llim].r1.cth; sth[i] = job->ginfo->pair[i+llim].r1.sth; mlim[i] = sharp_get_mlim(lmax, job->spin, sth[i], cth[i]); } /* map->phase where necessary */ map2phase (job, mmax, llim, ulim); #pragma omp parallel if ((job->flags&SHARP_NO_OPENMP)==0) { sharp_job ljob = *job; ljob.opcnt=0; sharp_Ylmgen_C generator; sharp_Ylmgen_init (&generator,lmax,mmax,ljob.spin); alloc_almtmp(&ljob,lmax); #pragma omp for schedule(dynamic,1) for (int mi=0; miainfo->nm; ++mi) { /* alm->alm_tmp where necessary */ alm2almtmp (&ljob, lmax, mi); inner_loop (&ljob, ispair, cth, sth, llim, ulim, &generator, mi, mlim); /* alm_tmp->alm where necessary */ almtmp2alm (&ljob, lmax, mi); } sharp_Ylmgen_destroy(&generator); dealloc_almtmp(&ljob); #pragma omp critical job->opcnt+=ljob.opcnt; } /* end of parallel region */ /* phase->map where necessary */ phase2map (job, mmax, llim, ulim); DEALLOC(ispair); DEALLOC(mlim); DEALLOC(cth); DEALLOC(sth); } /* end of chunk loop */ DEALLOC(job->norm_l); dealloc_phase (job); job->time=wallTime()-timer; } static void sharp_build_job_common (sharp_job *job, sharp_jobtype type, int spin, void *alm, void *map, const sharp_geom_info *geom_info, const sharp_alm_info *alm_info, int ntrans, int flags) { UTIL_ASSERT((ntrans>0)&&(ntrans<=SHARP_MAXTRANS), "bad number of simultaneous transforms"); if (type==SHARP_ALM2MAP_DERIV1) spin=1; if (type==SHARP_MAP2ALM) flags|=SHARP_USE_WEIGHTS; if (type==SHARP_Yt) type=SHARP_MAP2ALM; if (type==SHARP_WY) { type=SHARP_ALM2MAP; flags|=SHARP_USE_WEIGHTS; } UTIL_ASSERT((spin>=0)&&(spin<=alm_info->lmax), "bad spin"); job->type = type; job->spin = spin; job->norm_l = NULL; job->nmaps = (type==SHARP_ALM2MAP_DERIV1) ? 2 : ((spin>0) ? 2 : 1); job->nalm = (type==SHARP_ALM2MAP_DERIV1) ? 1 : ((spin>0) ? 2 : 1); job->ginfo = geom_info; job->ainfo = alm_info; job->flags = flags; if ((job->flags&SHARP_NVMAX)==0) job->flags|=sharp_nv_oracle (type, spin, ntrans); job->time = 0.; job->opcnt = 0; job->ntrans = ntrans; job->alm=alm; job->map=map; } void sharp_execute (sharp_jobtype type, int spin, void *alm, void *map, const sharp_geom_info *geom_info, const sharp_alm_info *alm_info, int ntrans, int flags, double *time, unsigned long long *opcnt) { sharp_job job; sharp_build_job_common (&job, type, spin, alm, map, geom_info, alm_info, ntrans, flags); sharp_execute_job (&job); if (time!=NULL) *time = job.time; if (opcnt!=NULL) *opcnt = job.opcnt; } void sharp_set_chunksize_min(int new_chunksize_min) { chunksize_min=new_chunksize_min; } void sharp_set_nchunks_max(int new_nchunks_max) { nchunks_max=new_nchunks_max; } int sharp_get_nv_max (void) { return 6; } static int sharp_oracle (sharp_jobtype type, int spin, int ntrans) { int lmax=511; int mmax=(lmax+1)/2; int nrings=(lmax+1)/4; int ppring=1; spin = (spin!=0) ? 2 : 0; ptrdiff_t npix=(ptrdiff_t)nrings*ppring; sharp_geom_info *tinfo; sharp_make_gauss_geom_info (nrings, ppring, 0., 1, ppring, &tinfo); ptrdiff_t nalms = ((mmax+1)*(mmax+2))/2 + (mmax+1)*(lmax-mmax); int ncomp = ntrans*((spin==0) ? 1 : 2); double **map; ALLOC2D(map,double,ncomp,npix); SET_ARRAY(map[0],0,npix*ncomp,0.); sharp_alm_info *alms; sharp_make_triangular_alm_info(lmax,mmax,1,&alms); dcmplx **alm; ALLOC2D(alm,dcmplx,ncomp,nalms); SET_ARRAY(alm[0],0,nalms*ncomp,0.); double time=1e30; int nvbest=-1; for (int nv=1; nv<=sharp_get_nv_max(); ++nv) { double time_acc=0.; double jtime; int ntries=0; do { sharp_execute(type,spin,&alm[0],&map[0],tinfo,alms,ntrans, nv|SHARP_DP|SHARP_NO_OPENMP,&jtime,NULL); if (jtime0),"bad number of simultaneous transforms"); UTIL_ASSERT(spin>=0, "bad spin"); ntrans=IMIN(ntrans,maxtr); if (nv_opt[ntrans-1][spin!=0][type]==0) nv_opt[ntrans-1][spin!=0][type]=sharp_oracle(type,spin,ntrans); return nv_opt[ntrans-1][spin!=0][type]; } #ifdef USE_MPI #include "sharp_mpi.c" #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libsharp/planck.make0000650000175000017530000000077512255154051026327 0ustar zoncaplanck00000000000000PKG:=libsharp SD:=$(SRCROOT)/$(PKG) OD:=$(BLDROOT)/$(PKG) FULL_INCLUDE+= -I$(SD) HDR_$(PKG):=$(SD)/*.h LIB_$(PKG):=$(LIBDIR)/libsharp.a LIBOBJ:=sharp_ylmgen_c.o sharp.o sharp_geomhelpers.o sharp_almhelpers.o sharp_core.o LIBOBJ:=$(LIBOBJ:%=$(OD)/%) ODEP:=$(HDR_$(PKG)) $(HDR_libfftpack) $(HDR_c_utils) $(OD)/sharp_core.o: $(SD)/sharp_core_inchelper.c $(SD)/sharp_core_inc.c $(SD)/sharp_core_inc2.c $(LIB_$(PKG)): $(LIBOBJ) $(LIBOBJ): $(ODEP) | $(OD)_mkdir all_hdr+=$(HDR_$(PKG)) all_lib+=$(LIB_$(PKG)) healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libsharp/sharp_vecsupport.h0000650000175000017530000001227212255154051027773 0ustar zoncaplanck00000000000000/* * This file is part of libsharp. * * libsharp is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libsharp is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libsharp; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libsharp is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* \file sharp_vecsupport.h * Convenience functions for vector arithmetics * * Copyright (C) 2012 Max-Planck-Society * Author: Martin Reinecke */ #ifndef SHARP_VECSUPPORT_H #define SHARP_VECSUPPORT_H #include #include "sharp_vecutil.h" typedef double Ts; #if (VLEN==1) typedef double Tv; #define vadd(a,b) ((a)+(b)) #define vaddeq(a,b) ((a)+=(b)) #define vsub(a,b) ((a)-(b)) #define vsubeq(a,b) ((a)-=(b)) #define vmul(a,b) ((a)*(b)) #define vmuleq(a,b) ((a)*=(b)) #define vfmaeq(a,b,c) ((a)+=(b)*(c)) #define vfmseq(a,b,c) ((a)-=(b)*(c)) #define vfmaaeq(a,b,c,d,e) ((a)+=(b)*(c)+(d)*(e)) #define vfmaseq(a,b,c,d,e) ((a)+=(b)*(c)-(d)*(e)) #define vneg(a) (-(a)) #define vload(a) (a) #define vabs(a) fabs(a) #define vsqrt(a) sqrt(a) #define vlt(a,b) (((a)<(b))?1.:0.) #define vgt(a,b) (((a)>(b))?1.:0.) #define vge(a,b) (((a)>=(b))?1.:0.) #define vne(a,b) (((a)!=(b))?1.:0.) #define vand(a,b) ((((a)*(b))!=0.)?1.:0.) #define vor(a,b) ((((a)+(b))!=0.)?1.:0.) static inline Tv vmin (Tv a, Tv b) { return (ab) ? a : b; } #define vanyTrue(a) ((a)!=0.) #define vallTrue(a) ((a)!=0.) #define vblend(m,a,b) (((m)!=0.) ? (a) : (b)) #define vzero 0. #define vone 1. #endif #if (VLEN==2) #include #if defined (__SSE3__) #include #endif #if defined (__SSE4_1__) #include #endif typedef __m128d Tv; #define vadd(a,b) _mm_add_pd(a,b) #define vaddeq(a,b) a=_mm_add_pd(a,b) #define vsub(a,b) _mm_sub_pd(a,b) #define vsubeq(a,b) a=_mm_sub_pd(a,b) #define vmul(a,b) _mm_mul_pd(a,b) #define vmuleq(a,b) a=_mm_mul_pd(a,b) #define vfmaeq(a,b,c) a=_mm_add_pd(a,_mm_mul_pd(b,c)) #define vfmseq(a,b,c) a=_mm_sub_pd(a,_mm_mul_pd(b,c)) #define vfmaaeq(a,b,c,d,e) \ a=_mm_add_pd(a,_mm_add_pd(_mm_mul_pd(b,c),_mm_mul_pd(d,e))) #define vfmaseq(a,b,c,d,e) \ a=_mm_add_pd(a,_mm_sub_pd(_mm_mul_pd(b,c),_mm_mul_pd(d,e))) #define vneg(a) _mm_xor_pd(_mm_set1_pd(-0.),a) #define vload(a) _mm_set1_pd(a) #define vabs(a) _mm_andnot_pd(_mm_set1_pd(-0.),a) #define vsqrt(a) _mm_sqrt_pd(a) #define vlt(a,b) _mm_cmplt_pd(a,b) #define vgt(a,b) _mm_cmpgt_pd(a,b) #define vge(a,b) _mm_cmpge_pd(a,b) #define vne(a,b) _mm_cmpneq_pd(a,b) #define vand(a,b) _mm_and_pd(a,b) #define vor(a,b) _mm_or_pd(a,b) #define vmin(a,b) _mm_min_pd(a,b) #define vmax(a,b) _mm_max_pd(a,b); #define vanyTrue(a) (_mm_movemask_pd(a)!=0) #define vallTrue(a) (_mm_movemask_pd(a)==3) #if defined(__SSE4_1__) #define vblend(m,a,b) _mm_blendv_pd(b,a,m) #else static inline Tv vblend(Tv m, Tv a, Tv b) { return _mm_or_pd(_mm_and_pd(a,m),_mm_andnot_pd(m,b)); } #endif #define vzero _mm_setzero_pd() #define vone _mm_set1_pd(1.) #endif #if (VLEN==4) #include #ifdef __FMA4__ #include #endif typedef __m256d Tv; #define vadd(a,b) _mm256_add_pd(a,b) #define vaddeq(a,b) a=_mm256_add_pd(a,b) #define vsub(a,b) _mm256_sub_pd(a,b) #define vsubeq(a,b) a=_mm256_sub_pd(a,b) #define vmul(a,b) _mm256_mul_pd(a,b) #define vmuleq(a,b) a=_mm256_mul_pd(a,b) #ifdef __FMA4__ #define vfmaeq(a,b,c) a=_mm256_macc_pd(b,c,a) #define vfmseq(a,b,c) a=_mm256_nmacc_pd(b,c,a) #define vfmaaeq(a,b,c,d,e) a=_mm256_macc_pd(d,e,_mm256_macc_pd(b,c,a)) #define vfmaseq(a,b,c,d,e) a=_mm256_nmacc_pd(d,e,_mm256_macc_pd(b,c,a)) #else #define vfmaeq(a,b,c) a=_mm256_add_pd(a,_mm256_mul_pd(b,c)) #define vfmseq(a,b,c) a=_mm256_sub_pd(a,_mm256_mul_pd(b,c)) #define vfmaaeq(a,b,c,d,e) \ a=_mm256_add_pd(a,_mm256_add_pd(_mm256_mul_pd(b,c),_mm256_mul_pd(d,e))) #define vfmaseq(a,b,c,d,e) \ a=_mm256_add_pd(a,_mm256_sub_pd(_mm256_mul_pd(b,c),_mm256_mul_pd(d,e))) #endif #define vneg(a) _mm256_xor_pd(_mm256_set1_pd(-0.),a) #define vload(a) _mm256_set1_pd(a) #define vabs(a) _mm256_andnot_pd(_mm256_set1_pd(-0.),a) #define vsqrt(a) _mm256_sqrt_pd(a) #define vlt(a,b) _mm256_cmp_pd(a,b,_CMP_LT_OQ) #define vgt(a,b) _mm256_cmp_pd(a,b,_CMP_GT_OQ) #define vge(a,b) _mm256_cmp_pd(a,b,_CMP_GE_OQ) #define vne(a,b) _mm256_cmp_pd(a,b,_CMP_NEQ_OQ) #define vand(a,b) _mm256_and_pd(a,b) #define vor(a,b) _mm256_or_pd(a,b) #define vmin(a,b) _mm256_min_pd(a,b) #define vmax(a,b) _mm256_max_pd(a,b) #define vanyTrue(a) (_mm256_movemask_pd(a)!=0) #define vallTrue(a) (_mm256_movemask_pd(a)==15) #define vblend(m,a,b) _mm256_blendv_pd(b,a,m) #define vzero _mm256_setzero_pd() #define vone _mm256_set1_pd(1.) #endif #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libsharp/sharp_lowlevel.h0000650000175000017530000002277012255154051027416 0ustar zoncaplanck00000000000000/* * This file is part of libsharp. * * libsharp is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libsharp is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libsharp; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libsharp is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file sharp_lowlevel.h * Low-level, portable interface for the spherical transform library. * * Copyright (C) 2012-2013 Max-Planck-Society * \author Martin Reinecke \author Dag Sverre Seljebotn */ #ifndef PLANCK_SHARP_LOWLEVEL_H #define PLANCK_SHARP_LOWLEVEL_H #include #ifdef __cplusplus extern "C" { #endif /*! \internal Helper type containing information about a single ring. */ typedef struct { double theta, phi0, weight, cth, sth; ptrdiff_t ofs; int nph, stride; } sharp_ringinfo; /*! \internal Helper type containing information about a pair of rings with colatitudes symmetric around the equator. */ typedef struct { sharp_ringinfo r1,r2; } sharp_ringpair; /*! \internal Type holding all required information about a map geometry. */ typedef struct { sharp_ringpair *pair; int npairs; } sharp_geom_info; /*! \defgroup almgroup Helpers for dealing with a_lm */ /*! \{ */ /*! \internal Helper type for index calculation in a_lm arrays. */ typedef struct { /*! Maximum \a l index of the array */ int lmax; /*! Number of different \a m values in this object */ int nm; /*! Array with \a nm entries containing the individual m values */ int *mval; /*! Combination of flags from sharp_almflags */ int flags; /*! Array with \a nm entries containing the (hypothetical) indices of the coefficients with quantum numbers 0,\a mval[i] */ ptrdiff_t *mvstart; /*! Stride between a_lm and a_(l+1),m */ ptrdiff_t stride; } sharp_alm_info; /*! alm_info flags */ typedef enum { SHARP_PACKED = 1 /*< m=0-coefficients are packed so that the (zero) imaginary part is not present. mvstart is in units of *real* float/double for all m; stride is in units of reals for m=0 and complex for m!=0 */ } sharp_almflags; /*! Creates an a_lm data structure from the following parameters: \param lmax maximum \a l quantum number (>=0) \param mmax maximum \a m quantum number (0<= \a mmax <= \a lmax) \param stride the stride between entries with identical \a m, and \a l differing by 1. \param mstart the index of the (hypothetical) coefficient with the quantum numbers 0,\a m. Must have \a mmax+1 entries. \param alm_info will hold a pointer to the newly created data structure */ void sharp_make_alm_info (int lmax, int mmax, int stride, const ptrdiff_t *mstart, sharp_alm_info **alm_info); /*! Creates an a_lm data structure which from the following parameters: \param lmax maximum \a l quantum number (\a >=0) \param nm number of different \a m (\a 0<=nm<=lmax+1) \param stride the stride between entries with identical \a m, and \a l differing by 1. \param mval array with \a nm entries containing the individual m values \param mvstart array with \a nm entries containing the (hypothetical) indices of the coefficients with the quantum numbers 0,\a mval[i] \param flags a combination of sharp_almflags (pass 0 unless you know you need this) \param alm_info will hold a pointer to the newly created data structure */ void sharp_make_general_alm_info (int lmax, int nm, int stride, const int *mval, const ptrdiff_t *mvstart, int flags, sharp_alm_info **alm_info); /*! Returns the index of the coefficient with quantum numbers \a l, \a mval[mi]. \note for a \a sharp_alm_info generated by sharp_make_alm_info() this is the index for the coefficient with the quantum numbers \a l, \a mi. */ ptrdiff_t sharp_alm_index (const sharp_alm_info *self, int l, int mi); /*! Deallocates the a_lm info object. */ void sharp_destroy_alm_info (sharp_alm_info *info); /*! \} */ /*! \defgroup geominfogroup Functions for dealing with geometry information */ /*! \{ */ /*! Creates a geometry information from a set of ring descriptions. All arrays passed to this function must have \a nrings elements. \param nrings the number of rings in the map \param nph the number of pixels in each ring \param ofs the index of the first pixel in each ring in the map array \param stride the stride between consecutive pixels \param phi0 the azimuth (in radians) of the first pixel in each ring \param theta the colatitude (in radians) of each ring \param wgt the pixel weight to be used for the ring in map2alm and adjoint map2alm transforms. Pass NULL to use 1.0 as weight for all rings. \param geom_info will hold a pointer to the newly created data structure */ void sharp_make_geom_info (int nrings, const int *nph, const ptrdiff_t *ofs, const int *stride, const double *phi0, const double *theta, const double *wgt, sharp_geom_info **geom_info); /*! Deallocates the geometry information in \a info. */ void sharp_destroy_geom_info (sharp_geom_info *info); /*! \} */ /*! \defgroup lowlevelgroup Low-level libsharp SHT interface */ /*! \{ */ /*! Enumeration of SHARP job types. */ typedef enum { SHARP_YtW=0, /*!< analysis */ SHARP_MAP2ALM=SHARP_YtW, /*!< analysis */ SHARP_Y=1, /*!< synthesis */ SHARP_ALM2MAP=SHARP_Y, /*!< synthesis */ SHARP_Yt=2, /*!< adjoint synthesis */ SHARP_WY=3, /*!< adjoint analysis */ SHARP_ALM2MAP_DERIV1=4 /*!< synthesis of first derivatives */ } sharp_jobtype; /*! Job flags */ typedef enum { SHARP_DP = 1<<4, /*!< map and a_lm are in double precision */ SHARP_ADD = 1<<5, /*!< results are added to the output arrays, instead of overwriting them */ SHARP_REAL_HARMONICS = 1<<6, /*!< Use the real spherical harmonic convention. For m==0, the alm are treated exactly the same as in the complex case. For m!=0, alm[i] represent a pair (+abs(m), -abs(m)) instead of (real, imag), and the coefficients are scaled by a factor of sqrt(2) relative to the complex case. In other words, (sqrt(.5) * alm[i]) recovers the corresponding complex coefficient (when accessed as complex). */ SHARP_USE_WEIGHTS = 1<<20, /* internal use only */ SHARP_NO_OPENMP = 1<<21, /* internal use only */ SHARP_NVMAX = (1<<4)-1 /* internal use only */ } sharp_jobflags; /*! Performs a libsharp SHT job. The interface deliberately does not use the C99 "complex" data type, in order to be callable from C89 and C++. \param type the type of SHT \param spin the spin of the quantities to be transformed \param alm contains pointers to the a_lm coefficients. If \a spin==0, alm[0] points to the a_lm of the first SHT, alm[1] to those of the second etc. If \a spin>0, alm[0] and alm[1] point to the a_lm of the first SHT, alm[2] and alm[3] to those of the second, etc. The exact data type of \a alm depends on whether the SHARP_DP flag is set. \param map contains pointers to the maps. If \a spin==0, map[0] points to the map of the first SHT, map[1] to that of the second etc. If \a spin>0, or \a type is SHARP_ALM2MAP_DERIV1, map[0] and map[1] point to the maps of the first SHT, map[2] and map[3] to those of the second, etc. The exact data type of \a map depends on whether the SHARP_DP flag is set. \param geom_info A \c sharp_geom_info object compatible with the provided \a map arrays. \param alm_info A \c sharp_alm_info object compatible with the provided \a alm arrays. All \c m values from 0 to some \c mmax<=lmax must be present exactly once. \param ntrans the number of simultaneous SHTs \param flags See sharp_jobflags. In particular, if SHARP_DP is set, then \a alm is expected to have the type "complex double **" and \a map is expected to have the type "double **"; otherwise, the expected types are "complex float **" and "float **", respectively. \param time If not NULL, the wall clock time required for this SHT (in seconds) will be written here. \param opcnt If not NULL, a conservative estimate of the total floating point operation count for this SHT will be written here. */ void sharp_execute (sharp_jobtype type, int spin, void *alm, void *map, const sharp_geom_info *geom_info, const sharp_alm_info *alm_info, int ntrans, int flags, double *time, unsigned long long *opcnt); void sharp_set_chunksize_min(int new_chunksize_min); void sharp_set_nchunks_max(int new_nchunks_max); /*! \} */ #ifdef __cplusplus } #endif #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libsharp/sharp_almhelpers.h0000650000175000017530000000326512255154051027717 0ustar zoncaplanck00000000000000/* * This file is part of libsharp. * * libsharp is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libsharp is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libsharp; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libsharp is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file sharp_almhelpers.h * SHARP helper function for the creation of a_lm data structures * * Copyright (C) 2008-2011 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_SHARP_ALMHELPERS_H #define PLANCK_SHARP_ALMHELPERS_H #include "sharp_lowlevel.h" #ifdef __cplusplus extern "C" { #endif /*! Initialises an a_lm data structure according to the scheme used by Healpix_cxx. \ingroup almgroup */ void sharp_make_triangular_alm_info (int lmax, int mmax, int stride, sharp_alm_info **alm_info); /*! Initialises an a_lm data structure according to the scheme used by Fortran Healpix \ingroup almgroup */ void sharp_make_rectangular_alm_info (int lmax, int mmax, int stride, sharp_alm_info **alm_info); #ifdef __cplusplus } #endif #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libsharp/sharp_core.c0000650000175000017530000001630612255154051026506 0ustar zoncaplanck00000000000000/* * This file is part of libsharp. * * libsharp is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libsharp is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libsharp; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libsharp is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file sharp_core.c * Computational core * * Copyright (C) 2012-2013 Max-Planck-Society * \author Martin Reinecke */ #include #include #include #include "sharp_vecsupport.h" #include "sharp_complex_hacks.h" #include "sharp_ylmgen_c.h" #include "sharp.h" #include "sharp_core.h" #include "c_utils.h" typedef complex double dcmplx; // must be in the range [0;6] #define MAXJOB_SPECIAL 2 #define XCONCAT2(a,b) a##_##b #define CONCAT2(a,b) XCONCAT2(a,b) #define XCONCAT3(a,b,c) a##_##b##_##c #define CONCAT3(a,b,c) XCONCAT3(a,b,c) #define nvec 1 #include "sharp_core_inchelper.c" #undef nvec #define nvec 2 #include "sharp_core_inchelper.c" #undef nvec #define nvec 3 #include "sharp_core_inchelper.c" #undef nvec #define nvec 4 #include "sharp_core_inchelper.c" #undef nvec #define nvec 5 #include "sharp_core_inchelper.c" #undef nvec #define nvec 6 #include "sharp_core_inchelper.c" #undef nvec void inner_loop (sharp_job *job, const int *ispair,const double *cth, const double *sth, int llim, int ulim, sharp_Ylmgen_C *gen, int mi, const int *mlim) { int njobs=job->ntrans, nv=job->flags&SHARP_NVMAX; if (njobs<=MAXJOB_SPECIAL) { switch (njobs*16+nv) { #if ((MAXJOB_SPECIAL>=1)&&(SHARP_MAXTRANS>=1)) case 0x11: CONCAT3(inner_loop,1,1) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x12: CONCAT3(inner_loop,2,1) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x13: CONCAT3(inner_loop,3,1) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x14: CONCAT3(inner_loop,4,1) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x15: CONCAT3(inner_loop,5,1) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x16: CONCAT3(inner_loop,6,1) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; #endif #if ((MAXJOB_SPECIAL>=2)&&(SHARP_MAXTRANS>=2)) case 0x21: CONCAT3(inner_loop,1,2) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x22: CONCAT3(inner_loop,2,2) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x23: CONCAT3(inner_loop,3,2) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x24: CONCAT3(inner_loop,4,2) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x25: CONCAT3(inner_loop,5,2) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x26: CONCAT3(inner_loop,6,2) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; #endif #if ((MAXJOB_SPECIAL>=3)&&(SHARP_MAXTRANS>=3)) case 0x31: CONCAT3(inner_loop,1,3) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x32: CONCAT3(inner_loop,2,3) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x33: CONCAT3(inner_loop,3,3) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x34: CONCAT3(inner_loop,4,3) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x35: CONCAT3(inner_loop,5,3) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x36: CONCAT3(inner_loop,6,3) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; #endif #if ((MAXJOB_SPECIAL>=4)&&(SHARP_MAXTRANS>=4)) case 0x41: CONCAT3(inner_loop,1,4) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x42: CONCAT3(inner_loop,2,4) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x43: CONCAT3(inner_loop,3,4) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x44: CONCAT3(inner_loop,4,4) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x45: CONCAT3(inner_loop,5,4) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x46: CONCAT3(inner_loop,6,4) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; #endif #if ((MAXJOB_SPECIAL>=5)&&(SHARP_MAXTRANS>=5)) case 0x51: CONCAT3(inner_loop,1,5) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x52: CONCAT3(inner_loop,2,5) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x53: CONCAT3(inner_loop,3,5) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x54: CONCAT3(inner_loop,4,5) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x55: CONCAT3(inner_loop,5,5) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x56: CONCAT3(inner_loop,6,5) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; #endif #if ((MAXJOB_SPECIAL>=6)&&(SHARP_MAXTRANS>=6)) case 0x61: CONCAT3(inner_loop,1,6) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x62: CONCAT3(inner_loop,2,6) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x63: CONCAT3(inner_loop,3,6) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x64: CONCAT3(inner_loop,4,6) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x65: CONCAT3(inner_loop,5,6) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; case 0x66: CONCAT3(inner_loop,6,6) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim); return; #endif } } #if (SHARP_MAXTRANS>MAXJOB_SPECIAL) else { switch (nv) { case 1: CONCAT2(inner_loop,1) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim,job->ntrans); return; case 2: CONCAT2(inner_loop,2) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim,job->ntrans); return; case 3: CONCAT2(inner_loop,3) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim,job->ntrans); return; case 4: CONCAT2(inner_loop,4) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim,job->ntrans); return; case 5: CONCAT2(inner_loop,5) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim,job->ntrans); return; case 6: CONCAT2(inner_loop,6) (job, ispair,cth,sth,llim,ulim,gen,mi,mlim,job->ntrans); return; } } #endif UTIL_FAIL("Incorrect vector parameters"); } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libsharp/sharp_ylmgen_c.h0000650000175000017530000000575012255154051027361 0ustar zoncaplanck00000000000000/* * This file is part of libsharp. * * libsharp is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libsharp is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libsharp; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libsharp is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file sharp_ylmgen_c.h * Code for efficient calculation of Y_lm(phi=0,theta) * * Copyright (C) 2005-2012 Max-Planck-Society * \author Martin Reinecke */ #ifndef SHARP_YLMGEN_C_H #define SHARP_YLMGEN_C_H #ifdef __cplusplus extern "C" { #endif enum { sharp_minscale=0, sharp_limscale=1, sharp_maxscale=1 }; static const double sharp_fbig=0x1p+800,sharp_fsmall=0x1p-800; static const double sharp_ftol=0x1p-60; static const double sharp_fbighalf=0x1p+400; typedef struct { double f[2]; } sharp_ylmgen_dbl2; typedef struct { double f[3]; } sharp_ylmgen_dbl3; typedef struct { /* for public use; immutable during lifetime */ int lmax, mmax, s; double *cf; /* for public use; will typically change after call to Ylmgen_prepare() */ int m; /* used if s==0 */ double *mfac; sharp_ylmgen_dbl2 *rf; /* used if s!=0 */ int sinPow, cosPow, preMinus_p, preMinus_m; double *prefac; int *fscale; sharp_ylmgen_dbl3 *fx; /* internal usage only */ /* used if s==0 */ double *root, *iroot; /* used if s!=0 */ double *flm1, *flm2, *inv; int mlo, mhi; } sharp_Ylmgen_C; /*! Creates a generator which will calculate helper data for Y_lm calculation up to \a l=l_max and \a m=m_max. */ void sharp_Ylmgen_init (sharp_Ylmgen_C *gen, int l_max, int m_max, int spin); /*! Deallocates a generator previously initialised by Ylmgen_init(). */ void sharp_Ylmgen_destroy (sharp_Ylmgen_C *gen); /*! Prepares the object for the calculation at \a m. */ void sharp_Ylmgen_prepare (sharp_Ylmgen_C *gen, int m); /*! Returns a pointer to an array with \a lmax+1 entries containing normalisation factors that must be applied to Y_lm values computed for \a spin. The array must be deallocated (using free()) by the user. */ double *sharp_Ylmgen_get_norm (int lmax, int spin); /*! Returns a pointer to an array with \a lmax+1 entries containing normalisation factors that must be applied to Y_lm values computed for first derivatives. The array must be deallocated (using free()) by the user. */ double *sharp_Ylmgen_get_d1norm (int lmax); #ifdef __cplusplus } #endif #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libsharp/sharp_core_inc.c0000650000175000017530000002112112255154051027326 0ustar zoncaplanck00000000000000/* * This file is part of libsharp. * * libsharp is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libsharp is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libsharp; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libsharp is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file sharp_core_inc.c * Type-dependent code for the computational core * * Copyright (C) 2012 Max-Planck-Society * \author Martin Reinecke */ typedef struct { Tv v[nvec]; } Tb; typedef union { Tb b; double s[VLEN*nvec]; } Y(Tbu); typedef struct { Tb r, i; } Y(Tbri); typedef struct { Tb qr, qi, ur, ui; } Y(Tbqu); typedef struct { double r[VLEN*nvec], i[VLEN*nvec]; } Y(Tsri); typedef struct { double qr[VLEN*nvec],qi[VLEN*nvec],ur[VLEN*nvec],ui[VLEN*nvec]; } Y(Tsqu); typedef union { Y(Tbri) b; Y(Tsri)s; } Y(Tburi); typedef union { Y(Tbqu) b; Y(Tsqu)s; } Y(Tbuqu); static inline Tb Y(Tbconst)(double val) { Tv v=vload(val); Tb res; for (int i=0; iv[i],v); } static inline Tb Y(Tbprod)(Tb a, Tb b) { Tb r; for (int i=0; iv[i],b.v[i]); } static void Y(Tbnormalize) (Tb * restrict val, Tb * restrict scale, double maxval) { const Tv vfsmall=vload(sharp_fsmall), vfbig=vload(sharp_fbig); const Tv vfmin=vload(sharp_fsmall*maxval), vfmax=vload(maxval); for (int i=0;iv[i]),vfmax); while (vanyTrue(mask)) { vmuleq(val->v[i],vblend(mask,vfsmall,vone)); vaddeq(scale->v[i],vblend(mask,vone,vzero)); mask = vgt(vabs(val->v[i]),vfmax); } mask = vand(vlt(vabs(val->v[i]),vfmin),vne(val->v[i],vzero)); while (vanyTrue(mask)) { vmuleq(val->v[i],vblend(mask,vfbig,vone)); vsubeq(scale->v[i],vblend(mask,vone,vzero)); mask = vand(vlt(vabs(val->v[i]),vfmin),vne(val->v[i],vzero)); } } } static void Y(mypow) (Tb val, int npow, Tb * restrict resd, Tb * restrict ress) { Tb scale=Y(Tbconst)(0.), scaleint=Y(Tbconst)(0.), res=Y(Tbconst)(1.); Y(Tbnormalize)(&val,&scaleint,sharp_fbighalf); do { if (npow&1) { for (int i=0; i>=1); *resd=res; *ress=scale; } static inline int Y(rescale) (Tb * restrict lam1, Tb * restrict lam2, Tb * restrict scale) { int did_scale=0; for (int i=0;iv[i]),vload(sharp_ftol)); if (vanyTrue(mask)) { did_scale=1; Tv fact = vblend(mask,vload(sharp_fsmall),vone); vmuleq(lam1->v[i],fact); vmuleq(lam2->v[i],fact); vaddeq(scale->v[i],vblend(mask,vone,vzero)); } } return did_scale; } static inline int Y(TballLt)(Tb a,double b) { Tv vb=vload(b); Tv res=vlt(a.v[0],vb); for (int i=1; im; Tb lam_1=Y(Tbconst)(0.), lam_2, scale; Y(mypow) (sth,l,&lam_2,&scale); Y(Tbmuleq1) (&lam_2,(gen->m&1) ? -gen->mfac[gen->m]:gen->mfac[gen->m]); Y(Tbnormalize)(&lam_2,&scale,sharp_ftol); int below_limit = Y(TballLt)(scale,sharp_limscale); while (below_limit) { if (l+2>gen->lmax) {*l_=gen->lmax+1;return;} Tv r0=vload(gen->rf[l].f[0]),r1=vload(gen->rf[l].f[1]); for (int i=0; irf[l+1].f[0]); r1=vload(gen->rf[l+1].f[1]); for (int i=0; iv[i] = vsub(vmul(vsub(cth.v[i],fx1),vmul(fx0,ryp->v[i])), vmul(fx2,rxp->v[i])); rxm->v[i] = vsub(vmul(vadd(cth.v[i],fx1),vmul(fx0,rym->v[i])), vmul(fx2,rxm->v[i])); } } static void Y(iter_to_ieee_spin) (const Tb cth, const Tb sth, int *l_, Tb * rec1p_, Tb * rec1m_, Tb * rec2p_, Tb * rec2m_, Tb * scalep_, Tb * scalem_, const sharp_Ylmgen_C * restrict gen) { const sharp_ylmgen_dbl3 * restrict fx = gen->fx; Tb cth2, sth2; for (int i=0; icosPow,&ccp,&ccps); Y(mypow)(sth2,gen->sinPow,&ssp,&ssps); Y(mypow)(cth2,gen->sinPow,&csp,&csps); Y(mypow)(sth2,gen->cosPow,&scp,&scps); Tb rec2p, rec2m, scalep, scalem; Tb rec1p=Y(Tbconst)(0.), rec1m=Y(Tbconst)(0.); Tv prefac=vload(gen->prefac[gen->m]), prescale=vload(gen->fscale[gen->m]); for (int i=0; ipreMinus_p) rec2p.v[i]=vneg(rec2p.v[i]); if (gen->preMinus_m) rec2m.v[i]=vneg(rec2m.v[i]); if (gen->s&1) rec2p.v[i]=vneg(rec2p.v[i]); } Y(Tbnormalize)(&rec2m,&scalem,sharp_ftol); Y(Tbnormalize)(&rec2p,&scalep,sharp_ftol); int l=gen->mhi; int below_limit = Y(TballLt)(scalep,sharp_limscale) && Y(TballLt)(scalem,sharp_limscale); while (below_limit) { if (l+2>gen->lmax) {*l_=gen->lmax+1;return;} Y(rec_step)(&rec1p,&rec1m,&rec2p,&rec2m,cth,fx[l+1]); Y(rec_step)(&rec2p,&rec2m,&rec1p,&rec1m,cth,fx[l+2]); if (Y(rescale)(&rec1p,&rec2p,&scalep) | Y(rescale)(&rec1m,&rec2m,&scalem)) below_limit = Y(TballLt)(scalep,sharp_limscale) && Y(TballLt)(scalem,sharp_limscale); l+=2; } *l_=l; *rec1p_=rec1p; *rec2p_=rec2p; *scalep_=scalep; *rec1m_=rec1m; *rec2m_=rec2m; *scalem_=scalem; } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libsharp/sharp_core_inchelper.c0000650000175000017530000000243012255154051030530 0ustar zoncaplanck00000000000000#define Tb CONCAT2(Tb,nvec) #define Y(arg) CONCAT2(arg,nvec) #include "sharp_core_inc.c" #if (SHARP_MAXTRANS>MAXJOB_SPECIAL) #define NJ1 , int njobs #define NJ2 , njobs #define Z(arg) CONCAT2(arg,nvec) #include "sharp_core_inc2.c" #undef Z #undef NJ1 #undef NJ2 #endif #define NJ1 #define NJ2 #if ((MAXJOB_SPECIAL>=1)&&(SHARP_MAXTRANS>=1)) #define njobs 1 #define Z(arg) CONCAT3(arg,nvec,njobs) #include "sharp_core_inc2.c" #undef Z #undef njobs #endif #if ((MAXJOB_SPECIAL>=2)&&(SHARP_MAXTRANS>=2)) #define njobs 2 #define Z(arg) CONCAT3(arg,nvec,njobs) #include "sharp_core_inc2.c" #undef Z #undef njobs #endif #if ((MAXJOB_SPECIAL>=3)&&(SHARP_MAXTRANS>=3)) #define njobs 3 #define Z(arg) CONCAT3(arg,nvec,njobs) #include "sharp_core_inc2.c" #undef Z #undef njobs #endif #if ((MAXJOB_SPECIAL>=4)&&(SHARP_MAXTRANS>=4)) #define njobs 4 #define Z(arg) CONCAT3(arg,nvec,njobs) #include "sharp_core_inc2.c" #undef Z #undef njobs #endif #if ((MAXJOB_SPECIAL>=5)&&(SHARP_MAXTRANS>=5)) #define njobs 5 #define Z(arg) CONCAT3(arg,nvec,njobs) #include "sharp_core_inc2.c" #undef Z #undef njobs #endif #if ((MAXJOB_SPECIAL>=6)&&(SHARP_MAXTRANS>=6)) #define njobs 6 #define Z(arg) CONCAT3(arg,nvec,njobs) #include "sharp_core_inc2.c" #undef Z #undef njobs #endif #undef NJ1 #undef NJ2 #undef Y #undef Tb healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libsharp/sharp_complex_hacks.h0000650000175000017530000000740712255154051030405 0ustar zoncaplanck00000000000000/* * This file is part of libsharp. * * libsharp is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libsharp is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libsharp; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libsharp is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* \file sharp_complex_hacks.h * support for converting vector types and complex numbers * * Copyright (C) 2012 Max-Planck-Society * Author: Martin Reinecke */ #ifndef SHARP_COMPLEX_HACKS_H #define SHARP_COMPLEX_HACKS_H #ifdef __cplusplus #error This header file cannot be included from C++, only from C #endif #include #include #include "sharp_vecsupport.h" #define UNSAFE_CODE #if (VLEN==1) static inline complex double vhsum_cmplx(Tv a, Tv b) { return a+_Complex_I*b; } static inline void vhsum_cmplx2 (Tv a, Tv b, Tv c, Tv d, complex double * restrict c1, complex double * restrict c2) { *c1 += a+_Complex_I*b; *c2 += c+_Complex_I*d; } #endif #if (VLEN==2) static inline complex double vhsum_cmplx (Tv a, Tv b) { #if defined(__SSE3__) Tv tmp = _mm_hadd_pd(a,b); #else Tv tmp = vadd(_mm_shuffle_pd(a,b,_MM_SHUFFLE2(0,1)), _mm_shuffle_pd(a,b,_MM_SHUFFLE2(1,0))); #endif union {Tv v; complex double c; } u; u.v=tmp; return u.c; } static inline void vhsum_cmplx2 (Tv a, Tv b, Tv c, Tv d, complex double * restrict c1, complex double * restrict c2) { #ifdef UNSAFE_CODE #if defined(__SSE3__) vaddeq(*((__m128d *)c1),_mm_hadd_pd(a,b)); vaddeq(*((__m128d *)c2),_mm_hadd_pd(c,d)); #else vaddeq(*((__m128d *)c1),vadd(_mm_shuffle_pd(a,b,_MM_SHUFFLE2(0,1)), _mm_shuffle_pd(a,b,_MM_SHUFFLE2(1,0)))); vaddeq(*((__m128d *)c2),vadd(_mm_shuffle_pd(c,d,_MM_SHUFFLE2(0,1)), _mm_shuffle_pd(c,d,_MM_SHUFFLE2(1,0)))); #endif #else union {Tv v; complex double c; } u1, u2; #if defined(__SSE3__) u1.v = _mm_hadd_pd(a,b); u2.v=_mm_hadd_pd(c,d); #else u1.v = vadd(_mm_shuffle_pd(a,b,_MM_SHUFFLE2(0,1)), _mm_shuffle_pd(a,b,_MM_SHUFFLE2(1,0))); u2.v = vadd(_mm_shuffle_pd(c,d,_MM_SHUFFLE2(0,1)), _mm_shuffle_pd(c,d,_MM_SHUFFLE2(1,0))); #endif *c1+=u1.c; *c2+=u2.c; #endif } #endif #if (VLEN==4) static inline complex double vhsum_cmplx (Tv a, Tv b) { Tv tmp=_mm256_hadd_pd(a,b); Tv tmp2=_mm256_permute2f128_pd(tmp,tmp,1); tmp=_mm256_add_pd(tmp,tmp2); #ifdef UNSAFE_CODE complex double ret; *((__m128d *)&ret)=_mm256_extractf128_pd(tmp, 0); return ret; #else union {Tv v; complex double c[2]; } u; u.v=tmp; return u.c[0]; #endif } static inline void vhsum_cmplx2 (Tv a, Tv b, Tv c, Tv d, complex double * restrict c1, complex double * restrict c2) { Tv tmp1=_mm256_hadd_pd(a,b), tmp2=_mm256_hadd_pd(c,d); Tv tmp3=_mm256_permute2f128_pd(tmp1,tmp2,49), tmp4=_mm256_permute2f128_pd(tmp1,tmp2,32); tmp1=vadd(tmp3,tmp4); #ifdef UNSAFE_CODE *((__m128d *)c1)=_mm_add_pd(*((__m128d *)c1),_mm256_extractf128_pd(tmp1, 0)); *((__m128d *)c2)=_mm_add_pd(*((__m128d *)c2),_mm256_extractf128_pd(tmp1, 1)); #else union {Tv v; complex double c[2]; } u; u.v=tmp1; *c1+=u.c[0]; *c2+=u.c[1]; #endif } #endif #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libsharp/sharp_geomhelpers.h0000650000175000017530000001447212255154051030077 0ustar zoncaplanck00000000000000/* * This file is part of libsharp. * * libsharp is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libsharp is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libsharp; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libsharp is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file sharp_geomhelpers.h * SHARP helper function for the creation of grid geometries * * Copyright (C) 2006-2013 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_SHARP_GEOMHELPERS_H #define PLANCK_SHARP_GEOMHELPERS_H #include "sharp_lowlevel.h" #ifdef __cplusplus extern "C" { #endif /*! Creates a geometry information describing a HEALPix map with an Nside parameter \a nside. \a weight contains the relative ring weights and must have \a 2*nside entries. \note if \a weight is a null pointer, all weights are assumed to be 1. \ingroup geominfogroup */ void sharp_make_weighted_healpix_geom_info (int nside, int stride, const double *weight, sharp_geom_info **geom_info); /*! Creates a geometry information describing a HEALPix map with an Nside parameter \a nside. \ingroup geominfogroup */ static inline void sharp_make_healpix_geom_info (int nside, int stride, sharp_geom_info **geom_info) { sharp_make_weighted_healpix_geom_info (nside, stride, NULL, geom_info); } /*! Creates a geometry information describing a Gaussian map with \a nrings iso-latitude rings and \a nphi pixels per ring. The azimuth of the first pixel in each ring is \a phi0 (in radians). The index difference between two adjacent pixels in an iso-latitude ring is \a stride_lon, the index difference between the two start pixels in consecutive iso-latitude rings is \a stride_lat. \ingroup geominfogroup */ void sharp_make_gauss_geom_info (int nrings, int nphi, double phi0, int stride_lon, int stride_lat, sharp_geom_info **geom_info); /*! Creates a geometry information describing an ECP map with \a nrings iso-latitude rings and \a nphi pixels per ring. The azimuth of the first pixel in each ring is \a phi0 (in radians). The index difference between two adjacent pixels in an iso-latitude ring is \a stride_lon, the index difference between the two start pixels in consecutive iso-latitude rings is \a stride_lat. \note The spacing of pixel centers is equidistant in colatitude and longitude. \note The sphere is pixelized in a way that the colatitude of the first ring is \a 0.5*(pi/nrings) and the colatitude of the last ring is \a pi-0.5*(pi/nrings). There are no pixel centers at the poles. \note This grid corresponds to Fejer's first rule. \ingroup geominfogroup */ void sharp_make_fejer1_geom_info (int nrings, int nphi, double phi0, int stride_lon, int stride_lat, sharp_geom_info **geom_info); /*! Old name for sharp_make_fejer1_geom_info() \ingroup geominfogroup */ static inline void sharp_make_ecp_geom_info (int nrings, int nphi, double phi0, int stride_lon, int stride_lat, sharp_geom_info **geom_info) { sharp_make_fejer1_geom_info (nrings, nphi, phi0, stride_lon, stride_lat, geom_info); } /*! Creates a geometry information describing an ECP map with \a nrings iso-latitude rings and \a nphi pixels per ring. The azimuth of the first pixel in each ring is \a phi0 (in radians). The index difference between two adjacent pixels in an iso-latitude ring is \a stride_lon, the index difference between the two start pixels in consecutive iso-latitude rings is \a stride_lat. \note The spacing of pixel centers is equidistant in colatitude and longitude. \note The sphere is pixelized in a way that the colatitude of the first ring is \a 0 and that of the last ring is \a pi. \note This grid corresponds to Clenshaw-Curtis integration. \ingroup geominfogroup */ void sharp_make_cc_geom_info (int nrings, int ppring, double phi0, int stride_lon, int stride_lat, sharp_geom_info **geom_info); /*! Creates a geometry information describing an ECP map with \a nrings iso-latitude rings and \a nphi pixels per ring. The azimuth of the first pixel in each ring is \a phi0 (in radians). The index difference between two adjacent pixels in an iso-latitude ring is \a stride_lon, the index difference between the two start pixels in consecutive iso-latitude rings is \a stride_lat. \note The spacing of pixel centers is equidistant in colatitude and longitude. \note The sphere is pixelized in a way that the colatitude of the first ring is \a pi/(nrings+1) and that of the last ring is \a pi-pi/(nrings+1). \note This grid corresponds to Fejer's second rule. \ingroup geominfogroup */ void sharp_make_fejer2_geom_info (int nrings, int ppring, double phi0, int stride_lon, int stride_lat, sharp_geom_info **geom_info); /*! Creates a geometry information describing a map with \a nrings iso-latitude rings and \a nphi pixels per ring. The azimuth of the first pixel in each ring is \a phi0 (in radians). The index difference between two adjacent pixels in an iso-latitude ring is \a stride_lon, the index difference between the two start pixels in consecutive iso-latitude rings is \a stride_lat. \note The spacing of pixel centers is equidistant in colatitude and longitude. \note The sphere is pixelized in a way that the colatitude of the first ring is \a pi/(2*nrings-1) and that of the last ring is \a pi. \note This is the grid introduced by McEwen & Wiaux 2011. \note This function does \e not define any quadrature weights. \ingroup geominfogroup */ void sharp_make_mw_geom_info (int nrings, int ppring, double phi0, int stride_lon, int stride_lat, sharp_geom_info **geom_info); #ifdef __cplusplus } #endif #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libsharp/sharp_core_inc2.c0000650000175000017530000006461012255154051027422 0ustar zoncaplanck00000000000000/* * This file is part of libsharp. * * libsharp is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libsharp is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libsharp; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libsharp is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file sharp_core_inc2.c * Type-dependent code for the computational core * * Copyright (C) 2012-2013 Max-Planck-Society * \author Martin Reinecke */ static void Z(alm2map_kernel) (const Tb cth, Y(Tbri) * restrict p1, Y(Tbri) * restrict p2, Tb lam_1, Tb lam_2, const sharp_ylmgen_dbl2 * restrict rf, const dcmplx * restrict alm, int l, int lmax NJ1) { if (njobs>1) { while (llmax; Tb lam_1,lam_2,scale; Y(iter_to_ieee) (sth,cth,&l,&lam_1,&lam_2,&scale,gen); job->opcnt += (l-gen->m) * 4*VLEN*nvec; if (l>lmax) return; job->opcnt += (lmax+1-l) * (4+4*njobs)*VLEN*nvec; Tb corfac; Y(getCorfac)(scale,&corfac,gen->cf); const sharp_ylmgen_dbl2 * restrict rf = gen->rf; const dcmplx * restrict alm=job->almtmp; int full_ieee = Y(TballGe)(scale,sharp_minscale); while (!full_ieee) { for (int j=0; jlmax) break; Tv r0=vload(rf[l-1].f[0]),r1=vload(rf[l-1].f[1]); for (int i=0; ilmax) break; r0=vload(rf[l-1].f[0]); r1=vload(rf[l-1].f[1]); for (int i=0; icf); full_ieee = Y(TballGe)(scale,sharp_minscale); } } if (l>lmax) return; Y(Tbmuleq)(&lam_1,corfac); Y(Tbmuleq)(&lam_2,corfac); Z(alm2map_kernel) (cth, p1, p2, lam_1, lam_2, rf, alm, l, lmax NJ2); } static void Z(calc_map2alm) (const Tb cth, const Tb sth, const sharp_Ylmgen_C *gen, sharp_job *job, const Y(Tbri) * restrict p1, const Y(Tbri) * restrict p2 NJ1) { int lmax=gen->lmax; Tb lam_1,lam_2,scale; int l=gen->m; Y(iter_to_ieee) (sth,cth,&l,&lam_1,&lam_2,&scale,gen); job->opcnt += (l-gen->m) * 4*VLEN*nvec; if (l>lmax) return; job->opcnt += (lmax+1-l) * (4+4*njobs)*VLEN*nvec; const sharp_ylmgen_dbl2 * restrict rf = gen->rf; Tb corfac; Y(getCorfac)(scale,&corfac,gen->cf); dcmplx * restrict alm=job->almtmp; int full_ieee = Y(TballGe)(scale,sharp_minscale); while (!full_ieee) { for (int j=0; jlmax) return; Tv r0=vload(rf[l-1].f[0]),r1=vload(rf[l-1].f[1]); for (int i=0; ilmax) return; r0=vload(rf[l-1].f[0]); r1=vload(rf[l-1].f[1]); for (int i=0; icf); full_ieee = Y(TballGe)(scale,sharp_minscale); } } Y(Tbmuleq)(&lam_1,corfac); Y(Tbmuleq)(&lam_2,corfac); Z(map2alm_kernel) (cth, p1, p2, lam_1, lam_2, rf, alm, l, lmax NJ2); } static inline void Z(saddstep) (Y(Tbqu) * restrict px, Y(Tbqu) * restrict py, const Tb rxp, const Tb rxm, const dcmplx * restrict alm NJ1) { for (int j=0; jv[i],rxm->v[i]); vfmaeq(agr,px[j].qr.v[i],lw); vfmaeq(agi,px[j].qi.v[i],lw); vfmaeq(acr,px[j].ur.v[i],lw); vfmaeq(aci,px[j].ui.v[i],lw); } for (int i=0; iv[i],rxp->v[i]); vfmseq(agr,py[j].ui.v[i],lx); vfmaeq(agi,py[j].ur.v[i],lx); vfmaeq(acr,py[j].qi.v[i],lx); vfmseq(aci,py[j].qr.v[i],lx); } vhsum_cmplx2(agr,agi,acr,aci,&alm[2*j],&alm[2*j+1]); } } static void Z(alm2map_spin_kernel) (Tb cth, Y(Tbqu) * restrict p1, Y(Tbqu) * restrict p2, Tb rec1p, Tb rec1m, Tb rec2p, Tb rec2m, const sharp_ylmgen_dbl3 * restrict fx, const dcmplx * restrict alm, int l, int lmax NJ1) { while (llmax; Tb rec1p, rec1m, rec2p, rec2m, scalem, scalep; Y(iter_to_ieee_spin) (cth,sth,&l,&rec1p,&rec1m,&rec2p,&rec2m,&scalep,&scalem,gen); job->opcnt += (l-gen->m) * 10*VLEN*nvec; if (l>lmax) return; job->opcnt += (lmax+1-l) * (12+16*njobs)*VLEN*nvec; const sharp_ylmgen_dbl3 * restrict fx = gen->fx; Tb corfacp,corfacm; Y(getCorfac)(scalep,&corfacp,gen->cf); Y(getCorfac)(scalem,&corfacm,gen->cf); const dcmplx * restrict alm=job->almtmp; int full_ieee = Y(TballGe)(scalep,sharp_minscale) && Y(TballGe)(scalem,sharp_minscale); while (!full_ieee) { Z(saddstep)(p1, p2, Y(Tbprod)(rec2p,corfacp), Y(Tbprod)(rec2m,corfacm), &alm[2*njobs*l] NJ2); if (++l>lmax) break; Y(rec_step)(&rec1p,&rec1m,&rec2p,&rec2m,cth,fx[l]); Z(saddstep)(p2, p1, Y(Tbprod)(rec1p,corfacp), Y(Tbprod)(rec1m,corfacm), &alm[2*njobs*l] NJ2); if (++l>lmax) break; Y(rec_step)(&rec2p,&rec2m,&rec1p,&rec1m,cth,fx[l]); if (Y(rescale)(&rec1p,&rec2p,&scalep) | Y(rescale)(&rec1m,&rec2m,&scalem)) { Y(getCorfac)(scalep,&corfacp,gen->cf); Y(getCorfac)(scalem,&corfacm,gen->cf); full_ieee = Y(TballGe)(scalep,sharp_minscale) && Y(TballGe)(scalem,sharp_minscale); } } if (l>lmax) return; Y(Tbmuleq)(&rec1p,corfacp); Y(Tbmuleq)(&rec2p,corfacp); Y(Tbmuleq)(&rec1m,corfacm); Y(Tbmuleq)(&rec2m,corfacm); Z(alm2map_spin_kernel) (cth, p1, p2, rec1p, rec1m, rec2p, rec2m, fx, alm, l, lmax NJ2); } static void Z(calc_map2alm_spin) (Tb cth, Tb sth, const sharp_Ylmgen_C * restrict gen, sharp_job *job, const Y(Tbqu) * restrict p1, const Y(Tbqu) * restrict p2 NJ1) { int l, lmax=gen->lmax; Tb rec1p, rec1m, rec2p, rec2m, scalem, scalep; Y(iter_to_ieee_spin) (cth,sth,&l,&rec1p,&rec1m,&rec2p,&rec2m,&scalep,&scalem,gen); job->opcnt += (l-gen->m) * 10*VLEN*nvec; if (l>lmax) return; job->opcnt += (lmax+1-l) * (12+16*njobs)*VLEN*nvec; const sharp_ylmgen_dbl3 * restrict fx = gen->fx; Tb corfacp,corfacm; Y(getCorfac)(scalep,&corfacp,gen->cf); Y(getCorfac)(scalem,&corfacm,gen->cf); dcmplx * restrict alm=job->almtmp; int full_ieee = Y(TballGe)(scalep,sharp_minscale) && Y(TballGe)(scalem,sharp_minscale); while (!full_ieee) { Tb t1=Y(Tbprod)(rec2p,corfacp), t2=Y(Tbprod)(rec2m,corfacm); Z(saddstep2)(p1, p2, &t1, &t2, &alm[2*njobs*l] NJ2); if (++l>lmax) return; Y(rec_step)(&rec1p,&rec1m,&rec2p,&rec2m,cth,fx[l]); t1=Y(Tbprod)(rec1p,corfacp); t2=Y(Tbprod)(rec1m,corfacm); Z(saddstep2)(p2, p1, &t1, &t2, &alm[2*njobs*l] NJ2); if (++l>lmax) return; Y(rec_step)(&rec2p,&rec2m,&rec1p,&rec1m,cth,fx[l]); if (Y(rescale)(&rec1p,&rec2p,&scalep) | Y(rescale)(&rec1m,&rec2m,&scalem)) { Y(getCorfac)(scalep,&corfacp,gen->cf); Y(getCorfac)(scalem,&corfacm,gen->cf); full_ieee = Y(TballGe)(scalep,sharp_minscale) && Y(TballGe)(scalem,sharp_minscale); } } Y(Tbmuleq)(&rec1p,corfacp); Y(Tbmuleq)(&rec2p,corfacp); Y(Tbmuleq)(&rec1m,corfacm); Y(Tbmuleq)(&rec2m,corfacm); Z(map2alm_spin_kernel)(cth,p1,p2,rec1p,rec1m,rec2p,rec2m,fx,alm,l,lmax NJ2); } static inline void Z(saddstep_d) (Y(Tbqu) * restrict px, Y(Tbqu) * restrict py, const Tb rxp, const Tb rxm, const dcmplx * restrict alm NJ1) { for (int j=0; jlmax; Tb rec1p, rec1m, rec2p, rec2m, scalem, scalep; Y(iter_to_ieee_spin) (cth,sth,&l,&rec1p,&rec1m,&rec2p,&rec2m,&scalep,&scalem,gen); job->opcnt += (l-gen->m) * 10*VLEN*nvec; if (l>lmax) return; job->opcnt += (lmax+1-l) * (12+8*njobs)*VLEN*nvec; const sharp_ylmgen_dbl3 * restrict fx = gen->fx; Tb corfacp,corfacm; Y(getCorfac)(scalep,&corfacp,gen->cf); Y(getCorfac)(scalem,&corfacm,gen->cf); const dcmplx * restrict alm=job->almtmp; int full_ieee = Y(TballGe)(scalep,sharp_minscale) && Y(TballGe)(scalem,sharp_minscale); while (!full_ieee) { Z(saddstep_d)(p1, p2, Y(Tbprod)(rec2p,corfacp), Y(Tbprod)(rec2m,corfacm), &alm[njobs*l] NJ2); if (++l>lmax) break; Y(rec_step)(&rec1p,&rec1m,&rec2p,&rec2m,cth,fx[l]); Z(saddstep_d)(p2, p1, Y(Tbprod)(rec1p,corfacp), Y(Tbprod)(rec1m,corfacm), &alm[njobs*l] NJ2); if (++l>lmax) break; Y(rec_step)(&rec2p,&rec2m,&rec1p,&rec1m,cth,fx[l]); if (Y(rescale)(&rec1p,&rec2p,&scalep) | Y(rescale)(&rec1m,&rec2m,&scalem)) { Y(getCorfac)(scalep,&corfacp,gen->cf); Y(getCorfac)(scalem,&corfacm,gen->cf); full_ieee = Y(TballGe)(scalep,sharp_minscale) && Y(TballGe)(scalem,sharp_minscale); } } if (l>lmax) return; Y(Tbmuleq)(&rec1p,corfacp); Y(Tbmuleq)(&rec2p,corfacp); Y(Tbmuleq)(&rec1m,corfacm); Y(Tbmuleq)(&rec2m,corfacm); Z(alm2map_deriv1_kernel) (cth, p1, p2, rec1p, rec1m, rec2p, rec2m, fx, alm, l, lmax NJ2); } #define VZERO(var) do { memset(&(var),0,sizeof(var)); } while(0) static void Z(inner_loop) (sharp_job *job, const int *ispair, const double *cth_, const double *sth_, int llim, int ulim, sharp_Ylmgen_C *gen, int mi, const int *mlim NJ1) { const int nval=nvec*VLEN; const int m = job->ainfo->mval[mi]; sharp_Ylmgen_prepare (gen, m); switch (job->type) { case SHARP_ALM2MAP: case SHARP_ALM2MAP_DERIV1: { if (job->spin==0) { for (int ith=0; ith=ulim-llim) itot=ulim-llim-1; if (mlim[itot]>=m) skip=0; cth.s[i]=cth_[itot]; sth.s[i]=sth_[itot]; } if (!skip) Z(calc_alm2map) (cth.b,sth.b,gen,job,&p1[0].b,&p2[0].b NJ2); for (int i=0; is_th + mi*job->s_m + 2*j; complex double r1 = p1[j].s.r[i] + p1[j].s.i[i]*_Complex_I, r2 = p2[j].s.r[i] + p2[j].s.i[i]*_Complex_I; job->phase[phas_idx] = r1+r2; if (ispair[itot]) job->phase[phas_idx+1] = r1-r2; } } } } } else { for (int ith=0; ith=ulim-llim) itot=ulim-llim-1; if (mlim[itot]>=m) skip=0; cth.s[i]=cth_[itot]; sth.s[i]=sth_[itot]; } if (!skip) (job->type==SHARP_ALM2MAP) ? Z(calc_alm2map_spin ) (cth.b,sth.b,gen,job,&p1[0].b,&p2[0].b NJ2) : Z(calc_alm2map_deriv1) (cth.b,sth.b,gen,job,&p1[0].b,&p2[0].b NJ2); for (int i=0; is_th + mi*job->s_m + 4*j; complex double q1 = p1[j].s.qr[i] + p1[j].s.qi[i]*_Complex_I, q2 = p2[j].s.qr[i] + p2[j].s.qi[i]*_Complex_I, u1 = p1[j].s.ur[i] + p1[j].s.ui[i]*_Complex_I, u2 = p2[j].s.ur[i] + p2[j].s.ui[i]*_Complex_I; job->phase[phas_idx] = q1+q2; job->phase[phas_idx+2] = u1+u2; if (ispair[itot]) { dcmplx *phQ = &(job->phase[phas_idx+1]), *phU = &(job->phase[phas_idx+3]); *phQ = q1-q2; *phU = u1-u2; if ((gen->mhi-gen->m+gen->s)&1) { *phQ=-(*phQ); *phU=-(*phU); } } } } } } } break; } case SHARP_MAP2ALM: { if (job->spin==0) { for (int ith=0; ith=ulim-llim) itot=ulim-llim-1; if (mlim[itot]>=m) skip=0; cth.s[i]=cth_[itot]; sth.s[i]=sth_[itot]; if ((i+ith=m)) { for (int j=0; js_th + mi*job->s_m + 2*j; dcmplx ph1=job->phase[phas_idx]; dcmplx ph2=ispair[itot] ? job->phase[phas_idx+1] : 0.; p1[j].s.r[i]=creal(ph1+ph2); p1[j].s.i[i]=cimag(ph1+ph2); p2[j].s.r[i]=creal(ph1-ph2); p2[j].s.i[i]=cimag(ph1-ph2); } } } if (!skip) Z(calc_map2alm)(cth.b,sth.b,gen,job,&p1[0].b,&p2[0].b NJ2); } } else { for (int ith=0; ith=ulim-llim) itot=ulim-llim-1; if (mlim[itot]>=m) skip=0; cth.s[i]=cth_[itot]; sth.s[i]=sth_[itot]; if (i+iths_th + mi*job->s_m + 4*j; dcmplx p1Q=job->phase[phas_idx], p1U=job->phase[phas_idx+2], p2Q=ispair[itot] ? job->phase[phas_idx+1]:0., p2U=ispair[itot] ? job->phase[phas_idx+3]:0.; if ((gen->mhi-gen->m+gen->s)&1) { p2Q=-p2Q; p2U=-p2U; } p1[j].s.qr[i]=creal(p1Q+p2Q); p1[j].s.qi[i]=cimag(p1Q+p2Q); p1[j].s.ur[i]=creal(p1U+p2U); p1[j].s.ui[i]=cimag(p1U+p2U); p2[j].s.qr[i]=creal(p1Q-p2Q); p2[j].s.qi[i]=cimag(p1Q-p2Q); p2[j].s.ur[i]=creal(p1U-p2U); p2[j].s.ui[i]=cimag(p1U-p2U); } } } if (!skip) Z(calc_map2alm_spin) (cth.b,sth.b,gen,job,&p1[0].b,&p2[0].b NJ2); } } break; } default: { UTIL_FAIL("must not happen"); break; } } } #undef VZERO healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libsharp/sharp_internal.h0000650000175000017530000000353412255154051027376 0ustar zoncaplanck00000000000000/* * This file is part of libsharp. * * libsharp is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libsharp is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libsharp; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libsharp is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file sharp_internal.h * Internally used functionality for the spherical transform library. * * Copyright (C) 2006-2013 Max-Planck-Society * \author Martin Reinecke \author Dag Sverre Seljebotn */ #ifndef PLANCK_SHARP_INTERNAL_H #define PLANCK_SHARP_INTERNAL_H #ifdef __cplusplus #error This header file cannot be included from C++, only from C #endif #include "sharp.h" #define SHARP_MAXTRANS 1 typedef struct { sharp_jobtype type; int spin; int nmaps, nalm; int flags; void **map; void **alm; int s_m, s_th; // strides in m and theta direction complex double *phase; double *norm_l; complex double *almtmp; const sharp_geom_info *ginfo; const sharp_alm_info *ainfo; double time; int ntrans; unsigned long long opcnt; } sharp_job; int sharp_get_nv_max (void); int sharp_nv_oracle (sharp_jobtype type, int spin, int ntrans); int sharp_get_mlim (int lmax, int spin, double sth, double cth); #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libsharp/sharp_cxx.h0000650000175000017530000001123312255154051026357 0ustar zoncaplanck00000000000000/* * This file is part of libsharp. * * libsharp is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libsharp is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libsharp; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libsharp is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file sharp_cxx.h * Spherical transform library * * Copyright (C) 2012 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_SHARP_CXX_H #define PLANCK_SHARP_CXX_H #include "sharp_lowlevel.h" #include "sharp_geomhelpers.h" #include "sharp_almhelpers.h" class sharp_base { protected: sharp_alm_info *ainfo; sharp_geom_info *ginfo; public: sharp_base() : ainfo(0), ginfo(0) {} ~sharp_base() { sharp_destroy_geom_info(ginfo); sharp_destroy_alm_info(ainfo); } void set_general_geometry (int nrings, const int *nph, const ptrdiff_t *ofs, const int *stride, const double *phi0, const double *theta, const double *wgt) { if (ginfo) sharp_destroy_geom_info(ginfo); sharp_make_geom_info (nrings, nph, ofs, stride, phi0, theta, wgt, &ginfo); } void set_ECP_geometry (int nrings, int nphi) { if (ginfo) sharp_destroy_geom_info(ginfo); sharp_make_ecp_geom_info (nrings, nphi, 0., 1, nphi, &ginfo); } void set_Gauss_geometry (int nrings, int nphi) { if (ginfo) sharp_destroy_geom_info(ginfo); sharp_make_gauss_geom_info (nrings, nphi, 0., 1, nphi, &ginfo); } void set_Healpix_geometry (int nside) { if (ginfo) sharp_destroy_geom_info(ginfo); sharp_make_healpix_geom_info (nside, 1, &ginfo); } void set_weighted_Healpix_geometry (int nside, const double *weight) { if (ginfo) sharp_destroy_geom_info(ginfo); sharp_make_weighted_healpix_geom_info (nside, 1, weight, &ginfo); } void set_triangular_alm_info (int lmax, int mmax) { if (ainfo) sharp_destroy_alm_info(ainfo); sharp_make_triangular_alm_info (lmax, mmax, 1, &ainfo); } }; template struct cxxjobhelper__ {}; template<> struct cxxjobhelper__ { enum {val=SHARP_DP}; }; template<> struct cxxjobhelper__ { enum {val=0}; }; template class sharp_cxxjob: public sharp_base { private: static void *conv (T *ptr) { return reinterpret_cast(ptr); } static void *conv (const T *ptr) { return const_cast(reinterpret_cast(ptr)); } public: void alm2map (const T *alm, T *map, bool add) { void *aptr=conv(alm), *mptr=conv(map); int flags=cxxjobhelper__::val | (add ? SHARP_ADD : 0); sharp_execute (SHARP_ALM2MAP, 0, &aptr, &mptr, ginfo, ainfo, 1, flags,0,0); } void alm2map_spin (const T *alm1, const T *alm2, T *map1, T *map2, int spin, bool add) { void *aptr[2], *mptr[2]; aptr[0]=conv(alm1); aptr[1]=conv(alm2); mptr[0]=conv(map1); mptr[1]=conv(map2); int flags=cxxjobhelper__::val | (add ? SHARP_ADD : 0); sharp_execute (SHARP_ALM2MAP,spin,aptr,mptr,ginfo,ainfo,1,flags,0,0); } void alm2map_der1 (const T *alm, T *map1, T *map2, bool add) { void *aptr=conv(alm), *mptr[2]; mptr[0]=conv(map1); mptr[1]=conv(map2); int flags=cxxjobhelper__::val | (add ? SHARP_ADD : 0); sharp_execute (SHARP_ALM2MAP_DERIV1,1,&aptr,mptr,ginfo,ainfo,1,flags,0,0); } void map2alm (const T *map, T *alm, bool add) { void *aptr=conv(alm), *mptr=conv(map); int flags=cxxjobhelper__::val | (add ? SHARP_ADD : 0); sharp_execute (SHARP_MAP2ALM,0,&aptr,&mptr,ginfo,ainfo,1,flags,0,0); } void map2alm_spin (const T *map1, const T *map2, T *alm1, T *alm2, int spin, bool add) { void *aptr[2], *mptr[2]; aptr[0]=conv(alm1); aptr[1]=conv(alm2); mptr[0]=conv(map1); mptr[1]=conv(map2); int flags=cxxjobhelper__::val | (add ? SHARP_ADD : 0); sharp_execute (SHARP_MAP2ALM,spin,aptr,mptr,ginfo,ainfo,1,flags,0,0); } }; #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libsharp/sharp_core.h0000650000175000017530000000263012255154051026506 0ustar zoncaplanck00000000000000/* * This file is part of libsharp. * * libsharp is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libsharp is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libsharp; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libsharp is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file sharp_core.h * Interface for the computational core * * Copyright (C) 2012-2013 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_SHARP_CORE_H #define PLANCK_SHARP_CORE_H #include "sharp_internal.h" #include "sharp_ylmgen_c.h" #ifdef __cplusplus extern "C" { #endif void inner_loop (sharp_job *job, const int *ispair,const double *cth, const double *sth, int llim, int ulim, sharp_Ylmgen_C *gen, int mi, const int *mlim); #ifdef __cplusplus } #endif #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/compile0000755000175000017500000001624512346122572023637 0ustar zoncazonca00000000000000#! /bin/sh # Wrapper for compilers which do not understand '-c -o'. scriptversion=2012-10-14.11; # UTC # Copyright (C) 1999-2013 Free Software Foundation, Inc. # Written by Tom Tromey . # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2, or (at your option) # any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program. If not, see . # As a special exception to the GNU General Public License, if you # distribute this file as part of a program that contains a # configuration script generated by Autoconf, you may include it under # the same distribution terms that you use for the rest of that program. # This file is maintained in Automake, please report # bugs to or send patches to # . nl=' ' # We need space, tab and new line, in precisely that order. Quoting is # there to prevent tools from complaining about whitespace usage. IFS=" "" $nl" file_conv= # func_file_conv build_file lazy # Convert a $build file to $host form and store it in $file # Currently only supports Windows hosts. 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That is also # ok. exec "$@" fi # Name of file we expect compiler to create. cofile=`echo "$cfile" | sed 's|^.*[\\/]||; s|^[a-zA-Z]:||; s/\.c$/.o/'` # Create the lock directory. # Note: use '[/\\:.-]' here to ensure that we don't use the same name # that we are using for the .o file. Also, base the name on the expected # object file name, since that is what matters with a parallel build. lockdir=`echo "$cofile" | sed -e 's|[/\\:.-]|_|g'`.d while true; do if mkdir "$lockdir" >/dev/null 2>&1; then break fi sleep 1 done # FIXME: race condition here if user kills between mkdir and trap. trap "rmdir '$lockdir'; exit 1" 1 2 15 # Run the compile. "$@" ret=$? if test -f "$cofile"; then test "$cofile" = "$ofile" || mv "$cofile" "$ofile" elif test -f "${cofile}bj"; then test "${cofile}bj" = "$ofile" || mv "${cofile}bj" "$ofile" fi rmdir "$lockdir" exit $ret # Local Variables: # mode: shell-script # sh-indentation: 2 # eval: (add-hook 'write-file-hooks 'time-stamp) # time-stamp-start: "scriptversion=" # time-stamp-format: "%:y-%02m-%02d.%02H" # time-stamp-time-zone: "UTC" # time-stamp-end: "; # UTC" # End: healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libfftpack/0000755000175000017500000000000012351601662024354 5ustar zoncazonca00000000000000healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libfftpack/ls_fft.c0000650000175000017530000001546612255154051026145 0ustar zoncaplanck00000000000000/* * This file is part of libfftpack. * * libfftpack is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libfftpack is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libfftpack; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libfftpack is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2005 Max-Planck-Society * \author Martin Reinecke */ #include #include #include #include "bluestein.h" #include "fftpack.h" #include "ls_fft.h" complex_plan make_complex_plan (size_t length) { complex_plan plan = RALLOC(complex_plan_i,1); size_t pfsum = prime_factor_sum(length); double comp1 = (double)(length*pfsum); double comp2 = 2*3*length*log(3.*length); comp2*=3.; /* fudge factor that appears to give good overall performance */ plan->length=length; plan->bluestein = (comp2bluestein) bluestein_i (length,&(plan->work),&(plan->worksize)); else { plan->worksize=4*length+15; plan->work=RALLOC(double,4*length+15); cffti(length, plan->work); } return plan; } complex_plan copy_complex_plan (complex_plan plan) { if (!plan) return NULL; { complex_plan newplan = RALLOC(complex_plan_i,1); *newplan = *plan; newplan->work=RALLOC(double,newplan->worksize); memcpy(newplan->work,plan->work,sizeof(double)*newplan->worksize); return newplan; } } void kill_complex_plan (complex_plan plan) { DEALLOC(plan->work); DEALLOC(plan); } void complex_plan_forward (complex_plan plan, double *data) { if (plan->bluestein) bluestein (plan->length, data, plan->work, -1); else cfftf (plan->length, data, plan->work); } void complex_plan_backward (complex_plan plan, double *data) { if (plan->bluestein) bluestein (plan->length, data, plan->work, 1); else cfftb (plan->length, data, plan->work); } real_plan make_real_plan (size_t length) { real_plan plan = RALLOC(real_plan_i,1); size_t pfsum = prime_factor_sum(length); double comp1 = .5*length*pfsum; double comp2 = 2*3*length*log(3.*length); comp2*=3; /* fudge factor that appears to give good overall performance */ plan->length=length; plan->bluestein = (comp2bluestein) bluestein_i (length,&(plan->work),&(plan->worksize)); else { plan->worksize=2*length+15; plan->work=RALLOC(double,2*length+15); rffti(length, plan->work); } return plan; } real_plan copy_real_plan (real_plan plan) { if (!plan) return NULL; { real_plan newplan = RALLOC(real_plan_i,1); *newplan = *plan; newplan->work=RALLOC(double,newplan->worksize); memcpy(newplan->work,plan->work,sizeof(double)*newplan->worksize); return newplan; } } void kill_real_plan (real_plan plan) { DEALLOC(plan->work); DEALLOC(plan); } void real_plan_forward_fftpack (real_plan plan, double *data) { if (plan->bluestein) { size_t m; size_t n=plan->length; double *tmp = RALLOC(double,2*n); for (m=0; mwork,-1); data[0] = tmp[0]; memcpy (data+1, tmp+2, (n-1)*sizeof(double)); DEALLOC(tmp); } else rfftf (plan->length, data, plan->work); } static void fftpack2halfcomplex (double *data, size_t n) { size_t m; double *tmp = RALLOC(double,n); tmp[0]=data[0]; for (m=1; m<(n+1)/2; ++m) { tmp[m]=data[2*m-1]; tmp[n-m]=data[2*m]; } if (!(n&1)) tmp[n/2]=data[n-1]; memcpy (data,tmp,n*sizeof(double)); DEALLOC(tmp); } static void halfcomplex2fftpack (double *data, size_t n) { size_t m; double *tmp = RALLOC(double,n); tmp[0]=data[0]; for (m=1; m<(n+1)/2; ++m) { tmp[2*m-1]=data[m]; tmp[2*m]=data[n-m]; } if (!(n&1)) tmp[n-1]=data[n/2]; memcpy (data,tmp,n*sizeof(double)); DEALLOC(tmp); } void real_plan_forward_fftw (real_plan plan, double *data) { real_plan_forward_fftpack (plan, data); fftpack2halfcomplex (data,plan->length); } void real_plan_backward_fftpack (real_plan plan, double *data) { if (plan->bluestein) { size_t m; size_t n=plan->length; double *tmp = RALLOC(double,2*n); tmp[0]=data[0]; tmp[1]=0.; memcpy (tmp+2,data+1, (n-1)*sizeof(double)); if ((n&1)==0) tmp[n+1]=0.; for (m=2; mwork, 1); for (m=0; mlength, data, plan->work); } void real_plan_backward_fftw (real_plan plan, double *data) { halfcomplex2fftpack (data,plan->length); real_plan_backward_fftpack (plan, data); } void real_plan_forward_c (real_plan plan, double *data) { size_t m; size_t n=plan->length; if (plan->bluestein) { for (m=1; m<2*n; m+=2) data[m]=0; bluestein (plan->length, data, plan->work, -1); data[1]=0; for (m=2; mwork); data[0] = data[1]; data[1] = 0; for (m=2; mlength; if (plan->bluestein) { size_t m; data[1]=0; for (m=2; mlength, data, plan->work, 1); for (m=1; m<2*n; m+=2) data[m]=0; } else { ptrdiff_t m; data[1] = data[0]; rfftb (n, data+1, plan->work); for (m=n-1; m>=0; --m) { data[2*m] = data[m+1]; data[2*m+1] = 0.; } } } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libfftpack/libfftpack.dox0000650000175000017530000000014612255154051027332 0ustar zoncaplanck00000000000000/*! \mainpage Libfftpack documentation
    • \ref fftgroup "Programming interface"
    */ healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libfftpack/ls_fft.h0000650000175000017530000001442312255154051026142 0ustar zoncaplanck00000000000000/* * This file is part of libfftpack. * * libfftpack is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libfftpack is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libfftpack; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libfftpack is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file ls_fft.h * Interface for the LevelS FFT package. * * Copyright (C) 2004 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_LS_FFT_H #define PLANCK_LS_FFT_H #include "c_utils.h" #ifdef __cplusplus extern "C" { #endif /*!\defgroup fftgroup FFT interface This package is intended to calculate one-dimensional real or complex FFTs with high accuracy and good efficiency even for lengths containing large prime factors. The code is written in C, but a Fortran wrapper exists as well. Before any FFT is executed, a plan must be generated for it. Plan creation is designed to be fast, so that there is no significant overhead if the plan is only used once or a few times. The main component of the code is based on Paul N. Swarztrauber's FFTPACK in the double precision incarnation by Hugh C. Pumphrey (http://www.netlib.org/fftpack/dp.tgz). I replaced the iterative sine and cosine calculations in radfg() and radbg() by an exact calculation, which slightly improves the transform accuracy for real FFTs with lengths containing large prime factors. Since FFTPACK becomes quite slow for FFT lengths with large prime factors (in the worst case of prime lengths it reaches \f$\mathcal{O}(n^2)\f$ complexity), I implemented Bluestein's algorithm, which computes a FFT of length \f$n\f$ by several FFTs of length \f$n_2\ge 2n-1\f$ and a convolution. Since \f$n_2\f$ can be chosen to be highly composite, this algorithm is more efficient if \f$n\f$ has large prime factors. The longer FFTs themselves are then computed using the FFTPACK routines. Bluestein's algorithm was implemented according to the description on Wikipedia ( http://en.wikipedia.org/wiki/Bluestein%27s_FFT_algorithm). \b Thread-safety: All routines can be called concurrently; all information needed by ls_fft is stored in the plan variable. However, using the same plan variable on multiple threads simultaneously is not supported and will lead to data corruption. */ /*! \{ */ typedef struct { double *work; size_t length, worksize; int bluestein; } complex_plan_i; /*! The opaque handle type for complex-FFT plans. */ typedef complex_plan_i * complex_plan; /*! Returns a plan for a complex FFT with \a length elements. */ complex_plan make_complex_plan (size_t length); /*! Constructs a copy of \a plan. */ complex_plan copy_complex_plan (complex_plan plan); /*! Destroys a plan for a complex FFT. */ void kill_complex_plan (complex_plan plan); /*! Computes a complex forward FFT on \a data, using \a plan. \a Data has the form r0, i0, r1, i1, ..., r[length-1], i[length-1]. */ void complex_plan_forward (complex_plan plan, double *data); /*! Computes a complex backward FFT on \a data, using \a plan. \a Data has the form r0, i0, r1, i1, ..., r[length-1], i[length-1]. */ void complex_plan_backward (complex_plan plan, double *data); typedef struct { double *work; size_t length, worksize; int bluestein; } real_plan_i; /*! The opaque handle type for real-FFT plans. */ typedef real_plan_i * real_plan; /*! Returns a plan for a real FFT with \a length elements. */ real_plan make_real_plan (size_t length); /*! Constructs a copy of \a plan. */ real_plan copy_real_plan (real_plan plan); /*! Destroys a plan for a real FFT. */ void kill_real_plan (real_plan plan); /*! Computes a real forward FFT on \a data, using \a plan and assuming the FFTPACK storage scheme: - on entry, \a data has the form r0, r1, ..., r[length-1]; - on exit, it has the form r0, r1, i1, r2, i2, ... (a total of \a length values). */ void real_plan_forward_fftpack (real_plan plan, double *data); /*! Computes a real backward FFT on \a data, using \a plan and assuming the FFTPACK storage scheme: - on entry, \a data has the form r0, r1, i1, r2, i2, ... (a total of \a length values); - on exit, it has the form r0, r1, ..., r[length-1]. */ void real_plan_backward_fftpack (real_plan plan, double *data); /*! Computes a real forward FFT on \a data, using \a plan and assuming the FFTW halfcomplex storage scheme: - on entry, \a data has the form r0, r1, ..., r[length-1]; - on exit, it has the form r0, r1, r2, ..., i2, i1. */ void real_plan_forward_fftw (real_plan plan, double *data); /*! Computes a real backward FFT on \a data, using \a plan and assuming the FFTW halfcomplex storage scheme: - on entry, \a data has the form r0, r1, r2, ..., i2, i1. - on exit, it has the form r0, r1, ..., r[length-1]. */ void real_plan_backward_fftw (real_plan plan, double *data); /*! Computes a real forward FFT on \a data, using \a plan and assuming a full-complex storage scheme: - on entry, \a data has the form r0, [ignored], r1, [ignored], ..., r[length-1], [ignored]; - on exit, it has the form r0, i0, r1, i1, ..., r[length-1], i[length-1]. */ void real_plan_forward_c (real_plan plan, double *data); /*! Computes a real backward FFT on \a data, using \a plan and assuming a full-complex storage scheme: - on entry, \a data has the form r0, i0, r1, i1, ..., r[length-1], i[length-1]; - on exit, it has the form r0, 0, r1, 0, ..., r[length-1], 0. */ void real_plan_backward_c (real_plan plan, double *data); /*! \} */ #ifdef __cplusplus } #endif #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libfftpack/planck.make0000650000175000017530000000056712255154051026627 0ustar zoncaplanck00000000000000PKG:=libfftpack SD:=$(SRCROOT)/$(PKG) OD:=$(BLDROOT)/$(PKG) FULL_INCLUDE+= -I$(SD) HDR_$(PKG):=$(SD)/*.h LIB_$(PKG):=$(LIBDIR)/libfftpack.a OBJ:=fftpack.o bluestein.o ls_fft.o OBJ:=$(OBJ:%=$(OD)/%) ODEP:=$(HDR_$(PKG)) $(HDR_c_utils) $(OD)/fftpack.o: $(SD)/fftpack_inc.c $(OBJ): $(ODEP) | $(OD)_mkdir $(LIB_$(PKG)): $(OBJ) all_hdr+=$(HDR_$(PKG)) all_lib+=$(LIB_$(PKG)) healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libfftpack/fftpack_inc.c0000650000175000017530000002047712255154051027135 0ustar zoncaplanck00000000000000/* * This file is part of libfftpack. * * libfftpack is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libfftpack is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libfftpack; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libfftpack is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* fftpack.c : A set of FFT routines in C. Algorithmically based on Fortran-77 FFTPACK by Paul N. Swarztrauber (Version 4, 1985). C port by Martin Reinecke (2010) */ #ifdef BACKWARD #define PSIGN + #define PMSIGNC(a,b,c,d) { a.r=c.r+d.r; a.i=c.i+d.i; b.r=c.r-d.r; b.i=c.i-d.i; } /* a = b*c */ #define MULPMSIGNC(a,b,c) { a.r=b.r*c.r-b.i*c.i; a.i=b.r*c.i+b.i*c.r; } #else #define PSIGN - #define PMSIGNC(a,b,c,d) { a.r=c.r-d.r; a.i=c.i-d.i; b.r=c.r+d.r; b.i=c.i+d.i; } /* a = conj(b)*c */ #define MULPMSIGNC(a,b,c) { a.r=b.r*c.r+b.i*c.i; a.i=b.r*c.i-b.i*c.r; } #endif static void X(2) (size_t ido, size_t l1, const cmplx *cc, cmplx *ch, const cmplx *wa) { const size_t cdim=2; size_t k,i; cmplx t; if (ido==1) for (k=0;kip) iang-=ip; abr.r += ccl[l ].r*wal[iang].r; abr.i += ccl[l ].i*wal[iang].r; abi.r += ccl[lc].r*wal[iang].i; abi.i += ccl[lc].i*wal[iang].i; } #ifndef BACKWARD { abi.i=-abi.i; abi.r=-abi.r; } #endif CONJFLIPC(abi) PMC(CH(i,k,j),CH(i,k,jc),abr,abi) } } DEALLOC(tarr); if (ido==1) return; for (j=1; j=2*n-1 and a convolution. Since n2 can be chosen to be highly composite, this algorithm is more efficient if n has large prime factors. The longer FFTs themselves are then computed using the FFTPACK routines. Bluestein's algorithm was implemented according to the description at http://en.wikipedia.org/wiki/Bluestein's_FFT_algorithm. Thread-safety: All routines can be called concurrently; all information needed by ls_fft is stored in the plan variable. However, using the same plan variable on multiple threads simultaneously is not supported and will lead to data corruption. healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libfftpack/bluestein.h0000654000175000017530000000260512264023644026665 0ustar zoncaplanck00000000000000/* * This file is part of libfftpack. * * libfftpack is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libfftpack is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libfftpack; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libfftpack is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file bluestein.h * Interface for the Bluestein algorithm * * Copyright (C) 2005 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_BLUESTEIN_H #define PLANCK_BLUESTEIN_H #include "c_utils.h" #ifdef __cplusplus extern "C" { #endif size_t prime_factor_sum (size_t n); void bluestein_i (size_t n, double **tstorage, size_t *worksize); void bluestein (size_t n, double *data, double *tstorage, int isign); #ifdef __cplusplus } #endif #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/libfftpack/fftpack.c0000650000175000017530000005333312255154051026301 0ustar zoncaplanck00000000000000/* * This file is part of libfftpack. * * libfftpack is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libfftpack is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libfftpack; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libfftpack is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* fftpack.c : A set of FFT routines in C. Algorithmically based on Fortran-77 FFTPACK by Paul N. Swarztrauber (Version 4, 1985). C port by Martin Reinecke (2010) */ #include #include #include #include "fftpack.h" #define WA(x,i) wa[(i)+(x)*ido] #define CH(a,b,c) ch[(a)+ido*((b)+l1*(c))] #define CC(a,b,c) cc[(a)+ido*((b)+cdim*(c))] #define PM(a,b,c,d) { a=c+d; b=c-d; } #define PMC(a,b,c,d) { a.r=c.r+d.r; a.i=c.i+d.i; b.r=c.r-d.r; b.i=c.i-d.i; } #define ADDC(a,b,c) { a.r=b.r+c.r; a.i=b.i+c.i; } #define SCALEC(a,b) { a.r*=b; a.i*=b; } #define CONJFLIPC(a) { double tmp_=a.r; a.r=-a.i; a.i=tmp_; } /* (a+ib) = conj(c+id) * (e+if) */ #define MULPM(a,b,c,d,e,f) { a=c*e+d*f; b=c*f-d*e; } typedef struct { double r,i; } cmplx; #define CONCAT(a,b) a ## b #define X(arg) CONCAT(passb,arg) #define BACKWARD #include "fftpack_inc.c" #undef BACKWARD #undef X #define X(arg) CONCAT(passf,arg) #include "fftpack_inc.c" #undef X #undef CC #undef CH #define CC(a,b,c) cc[(a)+ido*((b)+l1*(c))] #define CH(a,b,c) ch[(a)+ido*((b)+cdim*(c))] static void radf2 (size_t ido, size_t l1, const double *cc, double *ch, const double *wa) { const size_t cdim=2; size_t i, k, ic; double ti2, tr2; for (k=0; k=2*ip) aidx-=2*ip; ar2=csarr[aidx]; ai2=csarr[aidx+1]; for(ik=0; ik=2*ip) aidx-=2*ip; ar2=csarr[aidx]; ai2=csarr[aidx+1]; for(ik=0; ik0) ? passb4(ido, l1, p1, p2, wa+iw) : passf4(ido, l1, p1, p2, wa+iw); else if(ip==2) (isign>0) ? passb2(ido, l1, p1, p2, wa+iw) : passf2(ido, l1, p1, p2, wa+iw); else if(ip==3) (isign>0) ? passb3(ido, l1, p1, p2, wa+iw) : passf3(ido, l1, p1, p2, wa+iw); else if(ip==5) (isign>0) ? passb5(ido, l1, p1, p2, wa+iw) : passf5(ido, l1, p1, p2, wa+iw); else if(ip==6) (isign>0) ? passb6(ido, l1, p1, p2, wa+iw) : passf6(ido, l1, p1, p2, wa+iw); else (isign>0) ? passbg(ido, ip, l1, p1, p2, wa+iw) : passfg(ido, ip, l1, p1, p2, wa+iw); SWAP(p1,p2,cmplx *); l1=l2; iw+=(ip-1)*ido; } if (p1!=c) memcpy (c,p1,n*sizeof(cmplx)); } void cfftf(size_t n, double c[], double wsave[]) { if (n!=1) cfft1(n, (cmplx*)c, (cmplx*)wsave, (cmplx*)(wsave+2*n), (size_t*)(wsave+4*n),-1); } void cfftb(size_t n, double c[], double wsave[]) { if (n!=1) cfft1(n, (cmplx*)c, (cmplx*)wsave, (cmplx*)(wsave+2*n), (size_t*)(wsave+4*n),+1); } static void factorize (size_t n, const size_t *pf, size_t npf, size_t *ifac) { size_t nl=n, nf=0, ntry=0, j=0, i; startloop: j++; ntry = (j<=npf) ? pf[j-1] : ntry+2; do { size_t nq=nl / ntry; size_t nr=nl-ntry*nq; if (nr!=0) goto startloop; nf++; ifac[nf+1]=ntry; nl=nq; if ((ntry==2) && (nf!=1)) { for (i=nf+1; i>2; --i) ifac[i]=ifac[i-1]; ifac[2]=2; } } while(nl!=1); ifac[0]=n; ifac[1]=nf; } static void cffti1(size_t n, double wa[], size_t ifac[]) { static const size_t ntryh[5]={4,6,3,2,5}; static const double twopi=6.28318530717958647692; size_t j, k, fi; double argh=twopi/n; size_t i=0, l1=1; factorize (n,ntryh,5,ifac); for(k=1; k<=ifac[1]; k++) { size_t ip=ifac[k+1]; size_t ido=n/(l1*ip); for(j=1; j6) { wa[is ]=wa[i ]; wa[is+1]=wa[i+1]; } } l1*=ip; } } void cffti(size_t n, double wsave[]) { if (n!=1) cffti1(n, wsave+2*n,(size_t*)(wsave+4*n)); } /*---------------------------------------------------------------------- rfftf1, rfftb1, rfftf, rfftb, rffti1, rffti. Real FFTs. ----------------------------------------------------------------------*/ static void rfftf1(size_t n, double c[], double ch[], const double wa[], const size_t ifac[]) { size_t k1, l1=n, nf=ifac[1], iw=n-1; double *p1=ch, *p2=c; for(k1=1; k1<=nf;++k1) { size_t ip=ifac[nf-k1+2]; size_t ido=n / l1; l1 /= ip; iw-=(ip-1)*ido; SWAP (p1,p2,double *); if(ip==4) radf4(ido, l1, p1, p2, wa+iw); else if(ip==2) radf2(ido, l1, p1, p2, wa+iw); else if(ip==3) radf3(ido, l1, p1, p2, wa+iw); else if(ip==5) radf5(ido, l1, p1, p2, wa+iw); else { if (ido==1) SWAP (p1,p2,double *); radfg(ido, ip, l1, ido*l1, p1, p2, wa+iw); SWAP (p1,p2,double *); } } if (p1==c) memcpy (c,ch,n*sizeof(double)); } static void rfftb1(size_t n, double c[], double ch[], const double wa[], const size_t ifac[]) { size_t k1, l1=1, nf=ifac[1], iw=0; double *p1=c, *p2=ch; for(k1=1; k1<=nf; k1++) { size_t ip = ifac[k1+1], ido= n/(ip*l1); if(ip==4) radb4(ido, l1, p1, p2, wa+iw); else if(ip==2) radb2(ido, l1, p1, p2, wa+iw); else if(ip==3) radb3(ido, l1, p1, p2, wa+iw); else if(ip==5) radb5(ido, l1, p1, p2, wa+iw); else { radbg(ido, ip, l1, ido*l1, p1, p2, wa+iw); if (ido!=1) SWAP (p1,p2,double *); } SWAP (p1,p2,double *); l1*=ip; iw+=(ip-1)*ido; } if (p1!=c) memcpy (c,ch,n*sizeof(double)); } void rfftf(size_t n, double r[], double wsave[]) { if(n!=1) rfftf1(n, r, wsave, wsave+n,(size_t*)(wsave+2*n)); } void rfftb(size_t n, double r[], double wsave[]) { if(n!=1) rfftb1(n, r, wsave, wsave+n,(size_t*)(wsave+2*n)); } static void rffti1(size_t n, double wa[], size_t ifac[]) { static const size_t ntryh[4]={4,2,3,5}; static const double twopi=6.28318530717958647692; size_t i, j, k, fi; double argh=twopi/n; size_t is=0, l1=1; factorize (n,ntryh,4,ifac); for (k=1; k #include #include "fftpack.h" #include "bluestein.h" /* returns the sum of all prime factors of n */ size_t prime_factor_sum (size_t n) { size_t result=0,x,limit,tmp; while (((tmp=(n>>1))<<1)==n) { result+=2; n=tmp; } limit=(size_t)sqrt(n+0.01); for (x=3; x<=limit; x+=2) while ((tmp=(n/x))*x==n) { result+=x; n=tmp; limit=(size_t)sqrt(n+0.01); } if (n>1) result+=n; return result; } /* returns the smallest composite of 2, 3 and 5 which is >= n */ static size_t good_size(size_t n) { size_t f2, f23, f235, bestfac=2*n; if (n<=6) return n; for (f2=1; f2=n) bestfac=f235; return bestfac; } void bluestein_i (size_t n, double **tstorage, size_t *worksize) { static const double pi=3.14159265358979323846; size_t n2=good_size(n*2-1); size_t m, coeff; double angle, xn2; double *bk, *bkf, *work; double pibyn=pi/n; *worksize=2+2*n+8*n2+16; *tstorage = RALLOC(double,2+2*n+8*n2+16); ((size_t *)(*tstorage))[0]=n2; bk = *tstorage+2; bkf = *tstorage+2+2*n; work= *tstorage+2+2*(n+n2); /* initialize b_k */ bk[0] = 1; bk[1] = 0; coeff=0; for (m=1; m=2*n) coeff-=2*n; angle = pibyn*coeff; bk[2*m] = cos(angle); bk[2*m+1] = sin(angle); } /* initialize the zero-padded, Fourier transformed b_k. Add normalisation. */ xn2 = 1./n2; bkf[0] = bk[0]*xn2; bkf[1] = bk[1]*xn2; for (m=2; m<2*n; m+=2) { bkf[m] = bkf[2*n2-m] = bk[m] *xn2; bkf[m+1] = bkf[2*n2-m+1] = bk[m+1] *xn2; } for (m=2*n;m<=(2*n2-2*n+1);++m) bkf[m]=0.; cffti (n2,work); cfftf (n2,bkf,work); } void bluestein (size_t n, double *data, double *tstorage, int isign) { size_t n2=*((size_t *)tstorage); size_t m; double *bk, *bkf, *akf, *work; bk = tstorage+2; bkf = tstorage+2+2*n; work= tstorage+2+2*(n+n2); akf = tstorage+2+2*n+6*n2+16; /* initialize a_k and FFT it */ if (isign>0) for (m=0; m<2*n; m+=2) { akf[m] = data[m]*bk[m] - data[m+1]*bk[m+1]; akf[m+1] = data[m]*bk[m+1] + data[m+1]*bk[m]; } else for (m=0; m<2*n; m+=2) { akf[m] = data[m]*bk[m] + data[m+1]*bk[m+1]; akf[m+1] =-data[m]*bk[m+1] + data[m+1]*bk[m]; } for (m=2*n; m<2*n2; ++m) akf[m]=0; cfftf (n2,akf,work); /* do the convolution */ if (isign>0) for (m=0; m<2*n2; m+=2) { double im = -akf[m]*bkf[m+1] + akf[m+1]*bkf[m]; akf[m ] = akf[m]*bkf[m] + akf[m+1]*bkf[m+1]; akf[m+1] = im; } else for (m=0; m<2*n2; m+=2) { double im = akf[m]*bkf[m+1] + akf[m+1]*bkf[m]; akf[m ] = akf[m]*bkf[m] - akf[m+1]*bkf[m+1]; akf[m+1] = im; } /* inverse FFT */ cfftb (n2,akf,work); /* multiply by b_k* */ if (isign>0) for (m=0; m<2*n; m+=2) { data[m] = bk[m] *akf[m] - bk[m+1]*akf[m+1]; data[m+1] = bk[m+1]*akf[m] + bk[m] *akf[m+1]; } else for (m=0; m<2*n; m+=2) { data[m] = bk[m] *akf[m] + bk[m+1]*akf[m+1]; data[m+1] =-bk[m+1]*akf[m] + bk[m] *akf[m+1]; } } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/0000755000175000017500000000000012351601662024523 5ustar zoncazonca00000000000000healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/smoothing_cxx_module.cc0000654000175000017530000000757412264023644031450 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2005-2013 Max-Planck-Society * Author: Martin Reinecke */ #include "xcomplex.h" #include "paramfile.h" #include "healpix_data_io.h" #include "alm.h" #include "healpix_map.h" #include "healpix_map_fitsio.h" #include "alm_healpix_tools.h" #include "alm_powspec_tools.h" #include "fitshandle.h" #include "levels_facilities.h" #include "lsconstants.h" #include "announce.h" using namespace std; namespace { template void smoothing_cxx (paramfile ¶ms) { int nlmax = params.template find("nlmax"); string infile = params.template find("infile"); string outfile = params.template find("outfile"); bool polarisation = params.template find("polarisation"); int num_iter = params.template find("iter_order",0); double fwhm = arcmin2rad*params.template find("fwhm_arcmin"); if (fwhm<0) cout << "NOTE: negative FWHM supplied, doing a deconvolution..." << endl; if (!polarisation) { Healpix_Map map; read_Healpix_map_from_fits(infile,map,1,2); double avg=map.average(); map.Add(T(-avg)); tsize nmod = map.replaceUndefWith0(); if (nmod!=0) cout << "WARNING: replaced " << nmod << " undefined map pixels with a value of 0" << endl; arr weight; get_ring_weights (params,map.Nside(),weight); Alm > alm(nlmax,nlmax); if (map.Scheme()==NEST) map.swap_scheme(); map2alm_iter(map,alm,num_iter,weight); smoothWithGauss (alm, fwhm); alm2map(alm,map); map.Add(T(avg)); write_Healpix_map_to_fits (outfile,map,planckType()); } else { Healpix_Map mapT, mapQ, mapU; read_Healpix_map_from_fits(infile,mapT,mapQ,mapU); double avg=mapT.average(); mapT.Add(T(-avg)); tsize nmod = mapT.replaceUndefWith0()+mapQ.replaceUndefWith0() +mapU.replaceUndefWith0(); if (nmod!=0) cout << "WARNING: replaced " << nmod << " undefined map pixels with a value of 0" << endl; arr weight; get_ring_weights (params,mapT.Nside(),weight); Alm > almT(nlmax,nlmax), almG(nlmax,nlmax), almC(nlmax,nlmax); if (mapT.Scheme()==NEST) mapT.swap_scheme(); if (mapQ.Scheme()==NEST) mapQ.swap_scheme(); if (mapU.Scheme()==NEST) mapU.swap_scheme(); map2alm_pol_iter (mapT,mapQ,mapU,almT,almG,almC,num_iter,weight); smoothWithGauss (almT, almG, almC, fwhm); alm2map_pol(almT,almG,almC,mapT,mapQ,mapU); mapT.Add(T(avg)); write_Healpix_map_to_fits (outfile,mapT,mapQ,mapU,planckType()); } } } // unnamed namespace int smoothing_cxx_module (int argc, const char **argv) { module_startup ("smoothing_cxx", argc, argv); paramfile params (getParamsFromCmdline(argc,argv)); bool dp = params.find ("double_precision",false); dp ? smoothing_cxx(params) : smoothing_cxx(params); return 0; } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/alm_healpix_tools.cc0000650000175000017530000003542312255154051030700 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2003-2012 Max-Planck-Society * Author: Martin Reinecke */ #include "alm_healpix_tools.h" #include "alm.h" #include "healpix_map.h" #include "xcomplex.h" #include "sharp_cxx.h" using namespace std; namespace { void checkLmaxNside(tsize lmax, tsize nside) { if (lmax>4*nside) cout << "\nWARNING: map analysis requested with lmax>4*nside...\n" "is this really what you want?\n\n"; } } template void map2alm (const Healpix_Map &map, Alm > &alm, const arr &weight, bool add_alm) { planck_assert (map.Scheme()==RING, "map2alm: map must be in RING scheme"); planck_assert (int(weight.size())>=2*map.Nside(), "map2alm: weight array has too few entries"); planck_assert (map.fullyDefined(),"map contains undefined pixels"); checkLmaxNside(alm.Lmax(), map.Nside()); sharp_cxxjob job; job.set_weighted_Healpix_geometry (map.Nside(),&weight[0]); job.set_triangular_alm_info (alm.Lmax(), alm.Mmax()); job.map2alm(&map[0], &alm(0,0).re, add_alm); } template void map2alm (const Healpix_Map &map, Alm > &alm, const arr &weight, bool add_alm); template void map2alm (const Healpix_Map &map, Alm > &alm, const arr &weight, bool add_alm); template void map2alm_iter (const Healpix_Map &map, Alm > &alm, int num_iter, const arr &weight) { map2alm(map,alm,weight); for (int iter=1; iter<=num_iter; ++iter) { Healpix_Map map2(map.Nside(),map.Scheme(),SET_NSIDE); alm2map(alm,map2); for (int m=0; m &map, Alm > &alm, int num_iter, const arr &weight); template void map2alm_iter (const Healpix_Map &map, Alm > &alm, int num_iter, const arr &weight); template void map2alm_iter2 (const Healpix_Map &map, Alm > &alm, double err_abs, double err_rel) { double x_err_abs=1./err_abs, x_err_rel=1./err_rel; arr wgt(2*map.Nside()); wgt.fill(1); Healpix_Map map2(map); alm.SetToZero(); while(true) { map2alm(map2,alm,wgt,true); alm2map(alm,map2); double errmeasure=0; for (int m=0; m &map, Alm > &alm, double err_abs, double err_rel); template void map2alm_spin (const Healpix_Map &map1, const Healpix_Map &map2, Alm > &alm1, Alm > &alm2, int spin, const arr &weight, bool add_alm) { planck_assert (map1.Scheme()==RING, "map2alm_spin: maps must be in RING scheme"); planck_assert (map1.conformable(map2), "map2alm_spin: maps are not conformable"); planck_assert (alm1.conformable(alm1), "map2alm_spin: a_lm are not conformable"); planck_assert (int(weight.size())>=2*map1.Nside(), "map2alm_spin: weight array has too few entries"); planck_assert (map1.fullyDefined()&&map2.fullyDefined(), "map contains undefined pixels"); checkLmaxNside(alm1.Lmax(), map1.Nside()); sharp_cxxjob job; job.set_weighted_Healpix_geometry (map1.Nside(),&weight[0]); job.set_triangular_alm_info (alm1.Lmax(), alm1.Mmax()); job.map2alm_spin(&map1[0],&map2[0],&alm1(0,0).re,&alm2(0,0).re,spin,add_alm); } template void map2alm_spin (const Healpix_Map &map1, const Healpix_Map &map2, Alm > &alm1, Alm > &alm2, int spin, const arr &weight, bool add_alm); template void map2alm_spin (const Healpix_Map &map1, const Healpix_Map &map2, Alm > &alm1, Alm > &alm2, int spin, const arr &weight, bool add_alm); template void map2alm_spin_iter2 (const Healpix_Map &map1, const Healpix_Map &map2, Alm > &alm1, Alm > &alm2, int spin, double err_abs, double err_rel) { arr wgt(2*map1.Nside()); wgt.fill(1); Healpix_Map map1b(map1), map2b(map2); alm1.SetToZero(); alm2.SetToZero(); while(true) { map2alm_spin(map1b,map2b,alm1,alm2,spin,wgt,true); alm2map_spin(alm1,alm2,map1b,map2b,spin); double errmeasure=0; for (int m=0; m &map1, const Healpix_Map &map2, Alm > &alm1, Alm > &alm2, int spin, double err_abs, double err_rel); template void map2alm_pol (const Healpix_Map &mapT, const Healpix_Map &mapQ, const Healpix_Map &mapU, Alm > &almT, Alm > &almG, Alm > &almC, const arr &weight, bool add_alm) { planck_assert (mapT.Scheme()==RING, "map2alm_pol: maps must be in RING scheme"); planck_assert (mapT.conformable(mapQ) && mapT.conformable(mapU), "map2alm_pol: maps are not conformable"); planck_assert (almT.conformable(almG) && almT.conformable(almC), "map2alm_pol: a_lm are not conformable"); planck_assert (int(weight.size())>=2*mapT.Nside(), "map2alm_pol: weight array has too few entries"); planck_assert (mapT.fullyDefined()&&mapQ.fullyDefined()&&mapU.fullyDefined(), "map contains undefined pixels"); checkLmaxNside(almT.Lmax(), mapT.Nside()); sharp_cxxjob job; job.set_weighted_Healpix_geometry (mapT.Nside(),&weight[0]); job.set_triangular_alm_info (almT.Lmax(), almT.Mmax()); job.map2alm(&mapT[0], &almT(0,0).re, add_alm); job.map2alm_spin(&mapQ[0],&mapU[0],&almG(0,0).re,&almC(0,0).re,2,add_alm); } template void map2alm_pol (const Healpix_Map &mapT, const Healpix_Map &mapQ, const Healpix_Map &mapU, Alm > &almT, Alm > &almG, Alm > &almC, const arr &weight, bool add_alm); template void map2alm_pol (const Healpix_Map &mapT, const Healpix_Map &mapQ, const Healpix_Map &mapU, Alm > &almT, Alm > &almG, Alm > &almC, const arr &weight, bool add_alm); template void map2alm_pol_iter (const Healpix_Map &mapT, const Healpix_Map &mapQ, const Healpix_Map &mapU, Alm > &almT, Alm > &almG, Alm > &almC, int num_iter, const arr &weight) { map2alm_pol(mapT,mapQ,mapU,almT,almG,almC,weight); for (int iter=1; iter<=num_iter; ++iter) { Healpix_Map mapT2(mapT.Nside(),mapT.Scheme(),SET_NSIDE), mapQ2(mapT.Nside(),mapT.Scheme(),SET_NSIDE), mapU2(mapT.Nside(),mapT.Scheme(),SET_NSIDE); alm2map_pol(almT,almG,almC,mapT2,mapQ2,mapU2); for (int m=0; m &mapT, const Healpix_Map &mapQ, const Healpix_Map &mapU, Alm > &almT, Alm > &almG, Alm > &almC, int num_iter, const arr &weight); template void map2alm_pol_iter (const Healpix_Map &mapT, const Healpix_Map &mapQ, const Healpix_Map &mapU, Alm > &almT, Alm > &almG, Alm > &almC, int num_iter, const arr &weight); template void map2alm_pol_iter2 (const Healpix_Map &mapT, const Healpix_Map &mapQ, const Healpix_Map &mapU, Alm > &almT, Alm > &almG, Alm > &almC, double err_abs, double err_rel) { arr wgt(2*mapT.Nside()); wgt.fill(1); Healpix_Map mapT2(mapT), mapQ2(mapQ), mapU2(mapU); almT.SetToZero(); almG.SetToZero(); almC.SetToZero(); while(true) { map2alm_pol(mapT2,mapQ2,mapU2,almT,almG,almC,wgt,true); alm2map_pol(almT,almG,almC,mapT2,mapQ2,mapU2); double errmeasure=0; for (int m=0; m &mapT, const Healpix_Map &mapQ, const Healpix_Map &mapU, Alm > &almT, Alm > &almG, Alm > &almC, double err_abs, double err_rel); template void alm2map (const Alm > &alm, Healpix_Map &map) { planck_assert (map.Scheme()==RING, "alm2map: map must be in RING scheme"); sharp_cxxjob job; job.set_Healpix_geometry (map.Nside()); job.set_triangular_alm_info (alm.Lmax(), alm.Mmax()); job.alm2map(&alm(0,0).re, &map[0], false); } template void alm2map (const Alm > &alm, Healpix_Map &map); template void alm2map (const Alm > &alm, Healpix_Map &map); template void alm2map_spin (const Alm > &alm1, const Alm > &alm2, Healpix_Map &map1, Healpix_Map &map2, int spin) { planck_assert (map1.Scheme()==RING, "alm2map_spin: maps must be in RING scheme"); planck_assert (map1.conformable(map2), "alm2map_spin: maps are not conformable"); planck_assert (alm1.conformable(alm2), "alm2map_spin: a_lm are not conformable"); sharp_cxxjob job; job.set_Healpix_geometry (map1.Nside()); job.set_triangular_alm_info (alm1.Lmax(), alm1.Mmax()); job.alm2map_spin(&alm1(0,0).re,&alm2(0,0).re,&map1[0],&map2[0],spin,false); } template void alm2map_spin (const Alm > &alm1, const Alm > &alm2, Healpix_Map &map, Healpix_Map &map2, int spin); template void alm2map_spin (const Alm > &alm1, const Alm > &alm2, Healpix_Map &map, Healpix_Map &map2, int spin); template void alm2map_pol (const Alm > &almT, const Alm > &almG, const Alm > &almC, Healpix_Map &mapT, Healpix_Map &mapQ, Healpix_Map &mapU) { planck_assert (mapT.Scheme()==RING, "alm2map_pol: maps must be in RING scheme"); planck_assert (mapT.conformable(mapQ) && mapT.conformable(mapU), "alm2map_pol: maps are not conformable"); planck_assert (almT.conformable(almG) && almT.conformable(almC), "alm2map_pol: a_lm are not conformable"); sharp_cxxjob job; job.set_Healpix_geometry (mapT.Nside()); job.set_triangular_alm_info (almT.Lmax(), almT.Mmax()); job.alm2map(&almT(0,0).re, &mapT[0], false); job.alm2map_spin(&almG(0,0).re, &almC(0,0).re, &mapQ[0], &mapU[0], 2, false); } template void alm2map_pol (const Alm > &almT, const Alm > &almG, const Alm > &almC, Healpix_Map &mapT, Healpix_Map &mapQ, Healpix_Map &mapU); template void alm2map_pol (const Alm > &almT, const Alm > &almG, const Alm > &almC, Healpix_Map &mapT, Healpix_Map &mapQ, Healpix_Map &mapU); template void alm2map_der1 (const Alm > &alm, Healpix_Map &map, Healpix_Map &mapdth, Healpix_Map &mapdph) { planck_assert (map.Scheme()==RING, "alm2map_der1: maps must be in RING scheme"); planck_assert (map.conformable(mapdth) && map.conformable(mapdph), "alm2map_der1: maps are not conformable"); sharp_cxxjob job; job.set_Healpix_geometry (map.Nside()); job.set_triangular_alm_info (alm.Lmax(), alm.Mmax()); job.alm2map(&alm(0,0).re, &map[0], false); job.alm2map_der1(&alm(0,0).re, &mapdth[0], &mapdph[0], false); } template void alm2map_der1 (const Alm > &alm, Healpix_Map &map, Healpix_Map &map_dth, Healpix_Map &map_dph); template void alm2map_der1 (const Alm > &alm, Healpix_Map &map, Healpix_Map &map_dth, Healpix_Map &map_dph); healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/smoothing_cxx.cc0000650000175000017530000000030012255154051030050 0ustar zoncaplanck00000000000000#include "levels_facilities.h" #include "error_handling.h" int main (int argc, const char **argv) { PLANCK_DIAGNOSIS_BEGIN smoothing_cxx_module (argc, argv); PLANCK_DIAGNOSIS_END } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/map2tga_module.cc0000650000175000017530000002320312255154051030066 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2003-2011 Max-Planck-Society * Author: Martin Reinecke */ #include #include #include #include "safe_ptr.h" #include "healpix_map.h" #include "healpix_map_fitsio.h" #include "rotmatrix.h" #include "pointing.h" #include "ls_image.h" #include "paramfile.h" #include "levels_facilities.h" #include "lsconstants.h" #include "announce.h" #include "string_utils.h" using namespace std; namespace { void histo_eq (arr2 &img, float &minv, float &maxv, arr &newpos) { const int nbins=100; arr bincnt (nbins); bincnt.fill(0); int pixels=0; double fact = 1./(maxv-minv); for (tsize i=0; i-1e30) { img[i][j] = float((img[i][j]-minv)*fact); int idx = int(img[i][j]*nbins); idx=max(0,min(idx,nbins-1)); ++bincnt[idx]; ++pixels; } newpos.alloc(nbins+1); int accu=0; for (int m=0; m-1e30) { int idx = int(img[i][j]*nbins); idx=max(0,min(idx,nbins-1)); double frac = nbins*img[i][j] - idx; img[i][j] = float((1-frac)*newpos[idx] + frac*newpos[idx+1]); img[i][j] = float(minv+(maxv-minv)*img[i][j]); } } void pro_mollw (const Healpix_Map &map, double lon0, double lat0, int xsize, arr2 &img, float &minv, float &maxv, bool smooth) { int ysize=xsize/2; img.alloc(xsize,ysize); img.fill(-1e35); double xc=(xsize-1)/2., yc=(ysize-1)/2.; rotmatrix rot; rot.Make_CPAC_Euler_Matrix(0,-lat0,-lon0); minv=1e30; maxv=-1e30; for (tsize i=0; i(img[i][j],Healpix_undef)) { if (img[i][j]maxv) maxv=img[i][j]; } } } } void pro_gno (const Healpix_Map &map, double lon0, double lat0, int xsize, double delta, arr2 &img, float &minv, float &maxv, bool smooth) { rotmatrix rot; rot.Make_CPAC_Euler_Matrix(lon0,-lat0,0); double start=-(xsize/2.)*delta; img.alloc(xsize,xsize); minv=1e30; maxv=-1e30; for (tsize i=0; i(img[i][j],Healpix_undef)) { if (img[i][j]maxv) maxv=img[i][j]; } } } void colorbar (LS_Image &img, const Palette &pal, int xmin, int xmax, int ymin, int ymax, bool flippal, const arr &newpos) { int nbins = newpos.size()-1; for (int i=xmin; i<=xmax; ++i) { double val = (double(i)-xmin)/(xmax-xmin); if (nbins>0) { int idx = int(val*nbins); idx=max(0,min(idx,nbins-1)); double frac = nbins*val - idx; val = (1-frac)*newpos[idx] + frac*newpos[idx+1]; } if (flippal) val=1-val; Colour c = pal.Get_Colour(float(val)); for (int j=ymin; j<=ymax; ++j) img.put_pixel(i,j,c); } } string conv (double val) { ostringstream os; if (abs(val)>100 || abs(val)<0.01) { os << setw(10) << setprecision(3) << scientific << val; return os.str(); } os << setw(10) << setprecision(6) << fixed << val; return trim(os.str()); } } // unnamed namespace int map2tga_module (int argc, const char **argv) { module_startup ("map2tga",argc>=2, "\nUsage:\n" " map2tga \n\n" "or:\n" " map2tga [-sig ] [-pal ]\n" " [-xsz ] [-bar] [-log] [-asinh] [-lon ] [-lat ]\n" " [-mul ] [-add ] [-min ] [-max ]\n" " [-res ] [-title ] [-flippal] [-gnomonic]\n" " [-interpol] [-equalize] [-viewer ]\n\n"); safe_ptr params; if (argc>2) { vector leading; map dict; leading.push_back("infile"); leading.push_back("outfile"); parse_cmdline_classic (argc,argv,leading,dict); if (dict.find("gnomonic")!=dict.end()) { dict["pro"]="gno"; dict.erase("gnomonic"); } params = new paramfile(dict,false); } else params = new paramfile(argv[1]); string infile = params->find("infile"); string outfile = params->find("outfile"); int colnum = params->find("sig",1); int palnr = params->find("pal",4); bool flippal = params->find("flippal",false); int xres = params->find("xsz",1024); bool bar = params->find("bar",false); bool logflag = params->find("log",false); bool eqflag = params->find("equalize",false); bool asinhflag = params->find("asinh",false); double lon0 = degr2rad*params->find("lon",0); double lat0 = degr2rad*params->find("lat",0); double factor = params->find("mul",1); double offset = params->find("add",0); float usermin = params->find("min", -1e30); bool min_supplied = (usermin>-1e29); float usermax = params->find("max", 1e30); bool max_supplied = (usermax<1e29); double res = arcmin2rad*params->find("res",1); string title = params->find("title",""); string viewer = params->find("viewer",""); bool mollpro = (params->find("pro","")!="gno"); bool interpol = params->find("interpol",false); Healpix_Map map(0,RING); read_Healpix_map_from_fits(infile,map,colnum,2); for (int m=0; m(map[m],Healpix_undef)) { map[m] = float((map[m]+offset)*factor); if (logflag) map[m] = (map[m]<=0) ? float(Healpix_undef) : float(log(double(map[m]))/ln10); if (asinhflag) map[m] = (map[m]>=0) ? float( log(double( map[m]+sqrt(map[m]*map[m]+1)))) : float(-log(double(-map[m]+sqrt(map[m]*map[m]+1)))); if (min_supplied) if (map[m] < usermin) map[m] = usermin; if (max_supplied) if (map[m] > usermax) map[m] = usermax; } } arr2 imgarr; float minv, maxv; mollpro ? pro_mollw (map,lon0,lat0,xres,imgarr,minv,maxv,interpol) : pro_gno (map,lon0,lat0,xres,res,imgarr,minv,maxv,interpol); arr newpos; if (eqflag) histo_eq(imgarr,minv,maxv,newpos); if (min_supplied) minv = usermin; if (max_supplied) maxv = usermax; if (maxv==minv) maxv=minv+1e-10f; int xsz=imgarr.size1(); int ysz=imgarr.size2(); int yofs=ysz; int scale = max(1,xsz/800); if (bar) ysz+=60*scale; if (title != "") { ysz+=50*scale; yofs+=50*scale; } LS_Image img(xsz,ysz); img.fill(Colour(1,1,1)); img.set_font (giant_font); Palette pal; pal.setPredefined(palnr); if (title != "") img.annotate_centered(xsz/2,25*scale,Colour(0,0,0),title,scale); for (tsize i=0; i-1e32) { Colour c(0.5,0.5,0.5); if (!approx(imgarr[i][j],Healpix_undef)) { int col = int((imgarr[i][j]-minv)/(maxv-minv)*256); col = min(255,max(col,0)); float colfrac = (imgarr[i][j]-minv)/(maxv-minv); if (flippal) colfrac = 1-colfrac; c = pal.Get_Colour(colfrac); } img.put_pixel(i,yofs-j-1,c); } } if (bar) { colorbar (img,pal,xsz/10,(xsz*9)/10,ysz-40*scale,ysz-20*scale,flippal, newpos); img.set_font (medium_bold_font); img.annotate_centered (xsz/20,ysz-30*scale,Colour(0,0,0),conv(minv),scale); img.annotate_centered ((xsz*19)/20,ysz-30*scale,Colour(0,0,0),conv(maxv), scale); } img.write_TGA(outfile); if (viewer!="") { int retcode = system((viewer+" "+outfile).c_str()); if (retcode != 0) cout << "Warning: viewer return code was " << retcode << endl; } return 0; } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/powspec.cc0000650000175000017530000001020112255154051026640 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2003-2011 Max-Planck-Society * Author: Martin Reinecke */ #include "powspec.h" #include "lsconstants.h" using namespace std; void PowSpec::dealloc() { tt_.dealloc(); gg_.dealloc(); cc_.dealloc(); tg_.dealloc(); tc_.dealloc(); gc_.dealloc(); } PowSpec::PowSpec(int nspec, int lmax) { Set(nspec,lmax); } PowSpec::~PowSpec() {} void PowSpec::assertArraySizes() const { planck_assert((num_specs==1) || (num_specs==4) || (num_specs==6), "incorrect number of spectral components"); if (num_specs==1) planck_assert(multiequal(tsize(0),gg_.size(),cc_.size(),tg_.size(), tc_.size(),gc_.size()), "incorrect array sizes"); if (num_specs==4) { planck_assert(multiequal(tt_.size(),gg_.size(),cc_.size(),tg_.size()), "incorrect array sizes"); planck_assert(multiequal(tsize(0),tc_.size(),gc_.size()), "incorrect array sizes"); } if (num_specs==6) planck_assert(multiequal(tt_.size(),gg_.size(),cc_.size(),tg_.size(), tc_.size(),gc_.size()), "incorrect array sizes"); } bool PowSpec::consistentAutoPowspec() const { for (tsize l=0; l=4) for (tsize l=0; lsqrt(tt_[l]*gg_[l])) return false; } if (num_specs==6) for (tsize l=0; lsqrt(tt_[l]*cc_[l])) return false; if (abs(gc_[l])>sqrt(gg_[l]*cc_[l])) return false; } return true; } void PowSpec::Set(int nspec, int lmax) { num_specs=nspec; planck_assert ((num_specs==1) || (num_specs==4) || (num_specs==6), "wrong number of spectrums"); tt_.alloc(lmax+1); if (num_specs>1) { gg_.alloc(lmax+1); cc_.alloc(lmax+1); tg_.alloc(lmax+1); } if (num_specs>4) { tc_.alloc(lmax+1); gc_.alloc(lmax+1); } } void PowSpec::Set(arr &tt_new) { dealloc(); num_specs = 1; tt_.transfer(tt_new); //FIXME: temporarily relaxed to allow cross-spectra if (!consistentAutoPowspec()) cerr << "Warning: negative values in TT spectrum" << endl; } void PowSpec::Set(arr &tt_new, arr &gg_new, arr &cc_new, arr &tg_new) { dealloc(); num_specs = 4; tt_.transfer(tt_new); gg_.transfer(gg_new); cc_.transfer(cc_new); tg_.transfer(tg_new); assertArraySizes(); } void PowSpec::Set(arr &tt_new, arr &gg_new, arr &cc_new, arr &tg_new, arr &tc_new, arr &gc_new) { Set (tt_new, gg_new, cc_new, tg_new); num_specs = 6; tc_.transfer(tc_new); gc_.transfer(gc_new); assertArraySizes(); } void PowSpec::smoothWithGauss (double fwhm) { planck_assert (num_specs<=4, "not yet implemented for num_specs>4"); double sigma = fwhm*fwhm2sigma; double fact_pol = exp(2*sigma*sigma); for (tsize l=0; l1) { gg_[l] *= f2*f2; cc_[l] *= f2*f2; tg_[l] *= f1*f2; } } } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/healpix_base.h0000650000175000017530000004001612255154051027455 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file healpix_base.h * Copyright (C) 2003-2012 Max-Planck-Society * \author Martin Reinecke */ #ifndef HEALPIX_BASE_H #define HEALPIX_BASE_H #include #include "healpix_tables.h" #include "pointing.h" #include "arr.h" #include "rangeset.h" /*! Functionality related to the HEALPix pixelisation. */ template class T_Healpix_Base: public Healpix_Tables { protected: /*! The order of the map; -1 for nonhierarchical map. */ int order_; /*! The N_side parameter of the map; 0 if not allocated. */ I nside_; I npface_, ncap_, npix_; double fact1_, fact2_; /*! The map's ordering scheme. */ Healpix_Ordering_Scheme scheme_; /*! Returns the number of the next ring to the north of \a z=cos(theta). It may return 0; in this case \a z lies north of all rings. */ inline I ring_above (double z) const; void in_ring (I iz, double phi0, double dphi, rangeset &pixset) const; template void query_multidisc (const arr &norm, const arr &rad, int fact, rangeset &pixset) const; void query_multidisc_general (const arr &norm, const arr &rad, bool inclusive, const std::vector &cmds, rangeset &pixset) const; void query_strip_internal (double theta1, double theta2, bool inclusive, rangeset &pixset) const; inline I spread_bits (int v) const; inline int compress_bits (I v) const; I xyf2nest(int ix, int iy, int face_num) const; void nest2xyf(I pix, int &ix, int &iy, int &face_num) const; I xyf2ring(int ix, int iy, int face_num) const; void ring2xyf(I pix, int &ix, int &iy, int &face_num) const; I loc2pix (double z, double phi, double sth, bool have_sth) const; void pix2loc (I pix, double &z, double &phi, double &sth, bool &have_sth) const; void xyf2loc(double x, double y, int face, double &z, double &ph, double &sth, bool &have_sth) const; I nest_peano_helper (I pix, int dir) const; typedef I (T_Healpix_Base::*swapfunc)(I pix) const; public: static const int order_max; /*! Calculates the map order from its \a N_side parameter. Returns -1 if \a nside is not a power of 2. \param nside the \a N_side parameter */ static int nside2order (I nside); /*! Calculates the \a N_side parameter from the number of pixels. \param npix the number of pixels */ static I npix2nside (I npix); /*! Constructs an unallocated object. */ T_Healpix_Base (); /*! Constructs an object with a given \a order and the ordering scheme \a scheme. */ T_Healpix_Base (int order, Healpix_Ordering_Scheme scheme) { Set (order, scheme); } /*! Constructs an object with a given \a nside and the ordering scheme \a scheme. The \a nside_dummy parameter must be set to SET_NSIDE. */ T_Healpix_Base (I nside, Healpix_Ordering_Scheme scheme, const nside_dummy) { SetNside (nside, scheme); } /*! Adjusts the object to \a order and \a scheme. */ void Set (int order, Healpix_Ordering_Scheme scheme); /*! Adjusts the object to \a nside and \a scheme. */ void SetNside (I nside, Healpix_Ordering_Scheme scheme); /*! Returns the z-coordinate of the ring \a ring. This also works for the (not really existing) rings 0 and 4*nside. */ double ring2z (I ring) const; /*! Returns the number of the ring in which \a pix lies. */ I pix2ring (I pix) const; I xyf2pix(int ix, int iy, int face_num) const { return (scheme_==RING) ? xyf2ring(ix,iy,face_num) : xyf2nest(ix,iy,face_num); } void pix2xyf(I pix, int &ix, int &iy, int &face_num) const { (scheme_==RING) ? ring2xyf(pix,ix,iy,face_num) : nest2xyf(pix,ix,iy,face_num); } /*! Translates a pixel number from NEST to RING. */ I nest2ring (I pix) const; /*! Translates a pixel number from RING to NEST. */ I ring2nest (I pix) const; /*! Translates a pixel number from NEST to its Peano index. */ I nest2peano (I pix) const; /*! Translates a pixel number from its Peano index to NEST. */ I peano2nest (I pix) const; /*! Returns the number of the pixel which contains the angular coordinates (\a z:=cos(theta), \a phi). \note This method is inaccurate near the poles at high resolutions. */ I zphi2pix (double z, double phi) const { return loc2pix(z,phi,0.,false); } /*! Returns the number of the pixel which contains the angular coordinates \a ang. */ I ang2pix (const pointing &ang) const { const double pi_=3.141592653589793238462643383279502884197; planck_assert((ang.theta>=0)&&(ang.theta<=pi_),"invalid theta value"); return ((ang.theta<0.01) || (ang.theta > 3.14159-0.01)) ? loc2pix(cos(ang.theta),ang.phi,sin(ang.theta),true) : loc2pix(cos(ang.theta),ang.phi,0.,false); } /*! Returns the number of the pixel which contains the vector \a vec (\a vec is normalized if necessary). */ I vec2pix (const vec3 &vec) const { double xl = 1./vec.Length(); double phi = safe_atan2(vec.y,vec.x); double nz = vec.z*xl; if (std::abs(nz)>0.99) return loc2pix (nz,phi,sqrt(vec.x*vec.x+vec.y*vec.y)*xl,true); else return loc2pix (nz,phi,0,false); } /*! Returns the angular coordinates (\a z:=cos(theta), \a phi) of the center of the pixel with number \a pix. \note This method is inaccurate near the poles at high resolutions. */ void pix2zphi (I pix, double &z, double &phi) const { bool dum_b; double dum_d; pix2loc(pix,z,phi,dum_d,dum_b); } /*! Returns the angular coordinates of the center of the pixel with number \a pix. */ pointing pix2ang (I pix) const { double z, phi, sth; bool have_sth; pix2loc (pix,z,phi,sth,have_sth); return have_sth ? pointing(atan2(sth,z),phi) : pointing(acos(z),phi); } /*! Returns the vector to the center of the pixel with number \a pix. */ vec3 pix2vec (I pix) const { double z, phi, sth; bool have_sth; pix2loc (pix,z,phi,sth,have_sth); if (have_sth) return vec3(sth*cos(phi),sth*sin(phi),z); else { vec3 res; res.set_z_phi (z, phi); return res; } } template void query_disc_internal (pointing ptg, double radius, int fact, rangeset &pixset) const; /*! Returns the range set of all pixels whose centers lie within the disk defined by \a dir and \a radius. \param dir the angular coordinates of the disk center \param radius the radius (in radians) of the disk \param pixset a \a rangeset object containing the indices of all pixels whose centers lie inside the disk \note This method is more efficient in the RING scheme. */ void query_disc (pointing ptg, double radius, rangeset &pixset) const; /*! Returns the range set of all pixels which overlap with the disk defined by \a dir and \a radius. \param dir the angular coordinates of the disk center \param radius the radius (in radians) of the disk \param pixset a \a rangeset object containing the indices of all pixels overlapping with the disk. \param fact The overlapping test will be done at the resolution \a fact*nside. For NESTED ordering, \a fact must be a power of 2, else it can be any positive integer. A typical choice would be 4. \note This method may return some pixels which don't overlap with the disk at all. The higher \a fact is chosen, the fewer false positives are returned, at the cost of increased run time. \note This method is more efficient in the RING scheme. */ void query_disc_inclusive (pointing ptg, double radius, rangeset &pixset, int fact=1) const; /*! \deprecated Please use the version based on \a rangeset */ void query_disc (const pointing &dir, double radius, std::vector &listpix) const { rangeset pixset; query_disc(dir,radius,pixset); pixset.toVector(listpix); } /*! \deprecated Please use the version based on \a rangeset */ void query_disc_inclusive (const pointing &dir, double radius, std::vector &listpix, int fact=1) const { rangeset pixset; query_disc_inclusive(dir,radius,pixset,fact); pixset.toVector(listpix); } template void query_polygon_internal (const std::vector &vertex, int fact, rangeset &pixset) const; /*! Returns a range set of pixels whose centers lie within the convex polygon defined by the \a vertex array. \param vertex array containing the vertices of the polygon. \param pixset a \a rangeset object containing the indices of all pixels whose centers lie inside the polygon \note This method is more efficient in the RING scheme. */ void query_polygon (const std::vector &vertex, rangeset &pixset) const; /*! Returns a range set of pixels which overlap with the convex polygon defined by the \a vertex array. \param vertex array containing the vertices of the polygon. \param pixset a \a rangeset object containing the indices of all pixels overlapping with the polygon. \param fact The overlapping test will be done at the resolution \a fact*nside. For NESTED ordering, \a fact must be a power of 2, else it can be any positive integer. A typical choice would be 4. \note This method may return some pixels which don't overlap with the polygon at all. The higher \a fact is chosen, the fewer false positives are returned, at the cost of increased run time. \note This method is more efficient in the RING scheme. */ void query_polygon_inclusive (const std::vector &vertex, rangeset &pixset, int fact=1) const; /*! Returns a range set of pixels whose centers lie within the colatitude range defined by \a theta1 and \a theta2 (if \a inclusive==false), or which overlap with this region (if \a inclusive==true). If \a theta1 &pixset) const; /*! Returns useful information about a given ring of the map. \param ring the ring number (the number of the first ring is 1) \param startpix the number of the first pixel in the ring (NOTE: this is always given in the RING numbering scheme!) \param ringpix the number of pixels in the ring \param costheta the cosine of the colatitude of the ring \param sintheta the sine of the colatitude of the ring \param shifted if \a true, the center of the first pixel is not at \a phi=0 */ void get_ring_info (I ring, I &startpix, I &ringpix, double &costheta, double &sintheta, bool &shifted) const; /*! Returns useful information about a given ring of the map. \param ring the ring number (the number of the first ring is 1) \param startpix the number of the first pixel in the ring (NOTE: this is always given in the RING numbering scheme!) \param ringpix the number of pixels in the ring \param theta the colatitude (in radians) of the ring \param shifted if \a true, the center of the first pixel is not at \a phi=0 */ void get_ring_info2 (I ring, I &startpix, I &ringpix, double &theta, bool &shifted) const; /*! Returns useful information about a given ring of the map. \param ring the ring number (the number of the first ring is 1) \param startpix the number of the first pixel in the ring (NOTE: this is always given in the RING numbering scheme!) \param ringpix the number of pixels in the ring \param shifted if \a true, the center of the first pixel is not at \a phi=0 */ void get_ring_info_small (I ring, I &startpix, I &ringpix, bool &shifted) const; /*! Returns the neighboring pixels of \a pix in \a result. On exit, \a result contains (in this order) the pixel numbers of the SW, W, NW, N, NE, E, SE and S neighbor of \a pix. If a neighbor does not exist (this can only be the case for the W, N, E and S neighbors), its entry is set to -1. \note This method works in both RING and NEST schemes, but is considerably faster in the NEST scheme. */ void neighbors (I pix, fix_arr &result) const; /*! Returns interpolation information for the direction \a ptg. The surrounding pixels are returned in \a pix, their corresponding weights in \a wgt. \note This method works in both RING and NEST schemes, but is considerably faster in the RING scheme. */ void get_interpol (const pointing &ptg, fix_arr &pix, fix_arr &wgt) const; /*! Returns the order parameter of the object. */ int Order() const { return order_; } /*! Returns the \a N_side parameter of the object. */ I Nside() const { return nside_; } /*! Returns the number of pixels of the object. */ I Npix() const { return npix_; } /*! Returns the ordering scheme of the object. */ Healpix_Ordering_Scheme Scheme() const { return scheme_; } /*! Returns \a true, if both objects have the same nside and scheme, else \a false. */ bool conformable (const T_Healpix_Base &other) const { return ((nside_==other.nside_) && (scheme_==other.scheme_)); } /*! Swaps the contents of two Healpix_Base objects. */ void swap (T_Healpix_Base &other); /*! Returns the maximum angular distance (in radian) between any pixel center and its corners. */ double max_pixrad() const; /*! Returns the maximum angular distance (in radian) between any pixel center and its corners in a given ring. */ double max_pixrad(I ring) const; /*! Returns a set of points along the boundary of the given pixel. \a step=1 gives 4 points on the corners. The first point corresponds to the northernmost corner, the subsequent points follow the pixel boundary through west, south and east corners. \param pix pixel index number \param step the number of returned points is 4*step. */ void boundaries (I pix, tsize step, std::vector &out) const; arr swap_cycles() const; }; /*! T_Healpix_Base for Nside up to 2^13. */ typedef T_Healpix_Base Healpix_Base; /*! T_Healpix_Base for Nside up to 2^29. */ typedef T_Healpix_Base Healpix_Base2; #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/mult_alm_module.cc0000650000175000017530000001150512255154051030347 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2003-2011 Max-Planck-Society * Author: Martin Reinecke */ #include "xcomplex.h" #include "paramfile.h" #include "healpix_data_io.h" #include "powspec.h" #include "powspec_fitsio.h" #include "alm.h" #include "alm_fitsio.h" #include "alm_powspec_tools.h" #include "fitshandle.h" #include "levels_facilities.h" #include "lsconstants.h" #include "announce.h" using namespace std; namespace { template void mult_alm (paramfile ¶ms) { string infile = params.template find("infile"); string outfile = params.template find("outfile"); int nside_pixwin_in = params.template find("nside_pixwin_in",0); planck_assert (nside_pixwin_in>=0,"nside_pixwin_in must be >= 0"); int nside_pixwin_out = params.template find("nside_pixwin_out",0); planck_assert (nside_pixwin_out>=0,"nside_pixwin_out must be >= 0"); string cl_in = params.template find("cl_in",""); string cl_out = params.template find("cl_out",""); double fwhm_in = arcmin2rad*params.template find("fwhm_arcmin_in",0); planck_assert (fwhm_in>=0,"fwhm_arcmin_in must be >= 0"); double fwhm_out = arcmin2rad*params.template find("fwhm_arcmin_out",0); planck_assert (fwhm_out>=0,"fwhm_arcmin_out must be >= 0"); string datadir; if ((nside_pixwin_in>0) || (nside_pixwin_out>0)) datadir = params.template find("healpix_data"); bool polarisation = params.template find("polarisation"); if (!polarisation) { int nlmax, nmmax; get_almsize(infile, nlmax, nmmax, 2); Alm > alm; read_Alm_from_fits(infile,alm,nlmax,nmmax,2); if (fwhm_in>0) smoothWithGauss (alm, -fwhm_in); arr temp(nlmax+1); PowSpec tps; if (nside_pixwin_in>0) { read_pixwin(datadir,nside_pixwin_in,temp); for (int l=0; l<=nlmax; ++l) temp[l] = 1/temp[l]; alm.ScaleL (temp); } if (cl_in!="") { read_powspec_from_fits (cl_in,tps,1,alm.Lmax()); for (int l=0; l<=nlmax; ++l) temp[l] = 1./sqrt(tps.tt(l)); alm.ScaleL (temp); } if (nside_pixwin_out>0) { read_pixwin(datadir,nside_pixwin_out,temp); alm.ScaleL (temp); } if (cl_out!="") { read_powspec_from_fits (cl_out,tps,1,alm.Lmax()); for (int l=0; l<=nlmax; ++l) temp[l] = sqrt(tps.tt(l)); alm.ScaleL (temp); } if (fwhm_out>0) smoothWithGauss (alm, fwhm_out); write_Alm_to_fits (outfile,alm,nlmax,nmmax,planckType()); } else { int nlmax, nmmax; get_almsize_pol(infile, nlmax, nmmax); Alm > almT, almG, almC; read_Alm_from_fits(infile,almT,almG,almC,nlmax,nmmax,2); if (fwhm_in>0) smoothWithGauss (almT, almG, almC, -fwhm_in); arr temp(nlmax+1), pol(nlmax+1); if (nside_pixwin_in>0) { read_pixwin(datadir,nside_pixwin_in,temp,pol); for (int l=0; l<=nlmax; ++l) { temp[l] = 1/temp[l]; if (pol[l]!=0) pol[l] = 1/pol[l]; } almT.ScaleL(temp); almG.ScaleL(pol); almC.ScaleL(pol); } if (cl_in!="") planck_fail ("power spectra not (yet) supported with polarisation"); if (nside_pixwin_out>0) { read_pixwin(datadir,nside_pixwin_out,temp,pol); almT.ScaleL(temp); almG.ScaleL(pol); almC.ScaleL(pol); } if (cl_out!="") planck_fail ("power spectra not (yet) supported with polarisation"); if (fwhm_out>0) smoothWithGauss (almT, almG, almC, fwhm_out); write_Alm_to_fits (outfile,almT,almG,almC,nlmax,nmmax,planckType()); } } } // unnamed namespace int mult_alm_module (int argc, const char **argv) { module_startup ("mult_alm", argc, argv); paramfile params (getParamsFromCmdline(argc,argv)); bool dp = params.find ("double_precision",false); dp ? mult_alm(params) : mult_alm(params); return 0; } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/alm_powspec_tools.h0000650000175000017530000001115212255154051030561 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file alm_powspec_tools.h * Copyright (C) 2003, 2004, 2005 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_ALM_POWSPEC_TOOLS_H #define PLANCK_ALM_POWSPEC_TOOLS_H #include "xcomplex.h" template class Alm; class PowSpec; class planck_rng; class rotmatrix; /*! \defgroup alm_ps_group Conversions between a_lm and power spectra */ /*! \{ */ /*! Creates a Gaussian realisation of the input power spectrum \a powspec, using the random number generator \a rng, and returns the result in \a alm. */ template void create_alm (const PowSpec &powspec, Alm > &alm, planck_rng &rng); /*! Creates a Gaussian realisation of the polarised input power spectrum \a powspec, using the random number generator \a rng, and returns the result in \a almT, \a almG and \a almC. */ template void create_alm_pol (const PowSpec &powspec, Alm > &almT, Alm > &almG, Alm > &almC, planck_rng &rng); /*! Returns the unpolarised power spectrum of \a alm in \a powspec. */ template void extract_powspec (const Alm > &alm, PowSpec &powspec); /*! Returns the cross power spectrum of \a alm1 and \a alm2 in \a powspec. */ template void extract_crosspowspec (const Alm > &alm1, const Alm > &alm2, PowSpec &powspec); /*! Returns the polarised power spectrum of \a almT, \a almG and \a almC in \a powspec. */ template void extract_powspec (const Alm > &almT, const Alm > &almG, const Alm > &almC, PowSpec &powspec); /*! \} */ /*! Applies a convolution with a Gaussian beam with an FWHM of \a fwhm (in radian) to \a alm. \note If \a fwhm<0, a deconvolution with \a -fwhm is performed. \relates Alm */ template void smoothWithGauss (Alm > &alm, double fwhm); /*! Applies a convolution with a Gaussian beam with an FWHM of \a fwhm (in radian) to \a almT, \a almG and \a almC. \note If \a fwhm<0, a deconvolution with \a -fwhm is performed. \relates Alm */ template void smoothWithGauss (Alm > &almT, Alm > &almG, Alm > &almC, double fwhm); /*! Rotates \a alm through the Euler angles \a psi, \a theta and \a phi. The Euler angle convention is right handed, rotations are active. - \a psi is the first rotation about the z-axis (vertical) - then \a theta about the ORIGINAL (unrotated) y-axis - then \a phi about the ORIGINAL (unrotated) z-axis (vertical) \relates Alm */ template void rotate_alm (Alm > &alm, double psi, double theta, double phi); /*! Rotates \a almT, \a almG and \a almC through the Euler angles \a psi, \a theta and \a phi. The Euler angle convention is right handed, rotations are active. - \a psi is the first rotation about the z-axis (vertical) - then \a theta about the ORIGINAL (unrotated) y-axis - then \a phi about the ORIGINAL (unrotated) z-axis (vertical) \relates Alm */ template void rotate_alm (Alm > &almT, Alm > &almG, Alm > &almC, double psi, double theta, double phi); /*! Rotates \a alm through the rotation matrix \a mat. \relates Alm */ template void rotate_alm (Alm > &alm, const rotmatrix &mat); /*! Rotates \a almT, \a almG and \a almC through the rotation matrix \a mat. \relates Alm */ template void rotate_alm (Alm > &almT, Alm > &almG, Alm > &almC, const rotmatrix &mat); #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/syn_alm_cxx.cc0000650000175000017530000000027612255154051027517 0ustar zoncaplanck00000000000000#include "levels_facilities.h" #include "error_handling.h" int main (int argc, const char **argv) { PLANCK_DIAGNOSIS_BEGIN syn_alm_cxx_module (argc, argv); PLANCK_DIAGNOSIS_END } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/udgrade_cxx_module.cc0000650000175000017530000001155412255154051031036 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2003-2012 Max-Planck-Society * Author: Martin Reinecke */ #include "paramfile.h" #include "healpix_map.h" #include "healpix_map_fitsio.h" #include "fitshandle.h" #include "levels_facilities.h" #include "geom_utils.h" #include "xcomplex.h" #include "announce.h" using namespace std; namespace { double alpha (const pointing &p1, const pointing &p2) { vec3 v1(p1), v2(p2); vec3 dir(v2-v1); return orientation (v2, dir) - orientation (v1,dir); } template void degrade_pol (const Healpix_Map &q1, const Healpix_Map &u1, Healpix_Map &q2, Healpix_Map &u2, bool pessimistic) { planck_assert(q1.conformable(u1) && q2.conformable(u2), "map mismatch"); planck_assert(q2.Nside() sum = 0; for (int j=fact*y; j(q1[opix],Healpix_undef) ||approx(u1[opix],Healpix_undef))) { ++hits; xcomplex val(q1[opix],u1[opix]); double ang=alpha(q2.pix2ang(m),q1.pix2ang(opix)); xcomplex mul(cos(2*ang),sin(2*ang)); sum += val*mul; } } q2[m] = T((hits void udgrade_cxx (paramfile ¶ms) { string infile = params.template find("infile"); string outfile = params.template find("outfile"); int nside = params.template find("nside"); bool polarisation = params.template find("polarisation",false); bool pessimistic = params.template find("pessimistic",false); if (!polarisation) { Healpix_Map inmap; read_Healpix_map_from_fits(infile,inmap,1,2); Healpix_Map outmap (nside,inmap.Scheme(),SET_NSIDE); outmap.Import(inmap,pessimistic); write_Healpix_map_to_fits (outfile,outmap,planckType()); } else { Healpix_Map inmap; read_Healpix_map_from_fits(infile,inmap,1,2); Healpix_Map outmapT (nside,inmap.Scheme(),SET_NSIDE), outmapQ (nside,inmap.Scheme(),SET_NSIDE), outmapU (nside,inmap.Scheme(),SET_NSIDE); // planck_assert(inmap.Nside()<=outmapT.Nside(), // "degrading not supported for polarised maps"); outmapT.Import(inmap,pessimistic); if ((outmapQ.Nside()("parallel_transport",true)) { cout << "Experimental: polarised degrade with parallel transport" << endl; read_Healpix_map_from_fits(infile,inmap,2,2); Healpix_Map inmap2; read_Healpix_map_from_fits(infile,inmap2,3,2); degrade_pol (inmap, inmap2, outmapQ, outmapU, pessimistic); } else { cout << "WARNING: polarised degrade without parallel transport" << endl; read_Healpix_map_from_fits(infile,inmap,2,2); outmapQ.Import(inmap,pessimistic); read_Healpix_map_from_fits(infile,inmap,3,2); outmapU.Import(inmap,pessimistic); } write_Healpix_map_to_fits (outfile,outmapT,outmapQ,outmapU,planckType()); } } } // unnamed namespace int udgrade_cxx_module (int argc, const char **argv) { module_startup ("udgrade_cxx", argc, argv); paramfile params (getParamsFromCmdline(argc,argv)); bool dp = params.find ("double_precision",false); dp ? udgrade_cxx(params) : udgrade_cxx(params); return 0; } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/healpix_base.cc0000650000175000017530000011567312255154051027627 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2003-2012 Max-Planck-Society * Author: Martin Reinecke */ #include "healpix_base.h" #include "geom_utils.h" #include "lsconstants.h" using namespace std; template<> const int T_Healpix_Base::order_max=13; template<> const int T_Healpix_Base::order_max=29; template int T_Healpix_Base::nside2order (I nside) { planck_assert (nside>I(0), "invalid value for Nside"); return ((nside)&(nside-1)) ? -1 : ilog2(nside); } template I T_Healpix_Base::npix2nside (I npix) { I res=isqrt(npix/I(12)); planck_assert (npix==res*res*I(12), "invalid value for npix"); return res; } template I T_Healpix_Base::ring_above (double z) const { double az=abs(z); if (az<=twothird) // equatorial region return I(nside_*(2-1.5*z)); I iring = I(nside_*sqrt(3*(1-az))); return (z>0) ? iring : 4*nside_-iring-1; } namespace { /* Short note on the "zone": zone = 0: pixel lies completely outside the queried shape 1: pixel may overlap with the shape, pixel center is outside 2: pixel center is inside the shape, but maybe not the complete pixel 3: pixel lies completely inside the shape */ template inline void check_pixel (int o, int order_, int omax, int zone, rangeset &pixset, I pix, vector > &stk, bool inclusive, int &stacktop) { if (zone==0) return; if (o=3) { int sdist=2*(order_-o); // the "bit-shift distance" between map orders pixset.append(pix<=1) for (int i=0; i<4; ++i) stk.push_back(make_pair(4*pix+3-i,o+1)); // add children } else if (o>order_) // this implies that inclusive==true { if (zone>=2) // pixel center in shape { pixset.append(pix>>(2*(o-order_))); // output the parent pixel at order_ stk.resize(stacktop); // unwind the stack } else // (zone>=1): pixel center in safety range { if (o>(2*(o-order_))); // output the parent pixel at order_ stk.resize(stacktop); // unwind the stack } } } else // o==order_ { if (zone>=2) pixset.append(pix); else if (inclusive) // and (zone>=1) { if (order_ bool check_pixel_ring (const T_Healpix_Base &b1, const T_Healpix_Base &b2, I pix, I nr, I ipix1, int fct, double cz, double cphi, double cosrp2, I cpix) { if (pix>=nr) pix-=nr; if (pix<0) pix+=nr; pix+=ipix1; if (pix==cpix) return false; // disk center in pixel => overlap int px,py,pf; b1.pix2xyf(pix,px,py,pf); for (int i=0; icosrp2) // overlap return false; b2.pix2zphi(b2.xyf2pix(ox+fct-1,oy+i,pf),pz,pphi); if (cosdist_zphi(pz,pphi,cz,cphi)>cosrp2) // overlap return false; b2.pix2zphi(b2.xyf2pix(ox+fct-1-i,oy+fct-1,pf),pz,pphi); if (cosdist_zphi(pz,pphi,cz,cphi)>cosrp2) // overlap return false; b2.pix2zphi(b2.xyf2pix(ox,oy+fct-1-i,pf),pz,pphi); if (cosdist_zphi(pz,pphi,cz,cphi)>cosrp2) // overlap return false; } return true; } } // unnamed namespace template template void T_Healpix_Base::query_disc_internal (pointing ptg, double radius, int fact, rangeset &pixset) const { bool inclusive = (fact!=0); pixset.clear(); ptg.normalize(); if (scheme_==RING) { I fct=1; if (inclusive) { planck_assert (((I(1)<=fact, "invalid oversampling factor"); fct = fact; } T_Healpix_Base b2; double rsmall, rbig; if (fct>1) { b2.SetNside(fct*nside_,RING); rsmall = radius+b2.max_pixrad(); rbig = radius+max_pixrad(); } else rsmall = rbig = inclusive ? radius+max_pixrad() : radius; if (rsmall>=pi) { pixset.append(0,npix_); return; } rbig = min(pi,rbig); double cosrsmall = cos(rsmall); double cosrbig = cos(rbig); double z0 = cos(ptg.theta); double xa = 1./sqrt((1-z0)*(1+z0)); I cpix=zphi2pix(z0,ptg.phi); double rlat1 = ptg.theta - rsmall; double zmax = cos(rlat1); I irmin = ring_above (zmax)+1; if ((rlat1<=0) && (irmin>1)) // north pole in the disk { I sp,rp; bool dummy; get_ring_info_small(irmin-1,sp,rp,dummy); pixset.append(0,sp+rp); } if ((fct>1) && (rlat1>0)) irmin=max(I(1),irmin-1); double rlat2 = ptg.theta + rsmall; double zmin = cos(rlat2); I irmax = ring_above (zmin); if ((fct>1) && (rlat2(nr*inv_twopi*(ptg.phi-dphi) - shift)+1; I ip_hi = ifloor(nr*inv_twopi*(ptg.phi+dphi) - shift); if (fct>1) { while ((ip_lo<=ip_hi) && check_pixel_ring (*this,b2,ip_lo,nr,ipix1,fct,z0,ptg.phi,cosrsmall,cpix)) ++ip_lo; while ((ip_hi>ip_lo) && check_pixel_ring (*this,b2,ip_hi,nr,ipix1,fct,z0,ptg.phi,cosrsmall,cpix)) --ip_hi; } if (ip_lo<=ip_hi) { if (ip_hi>=nr) { ip_lo-=nr; ip_hi-=nr; } if (ip_lo<0) { pixset.append(ipix1,ipix1+ip_hi+1); pixset.append(ipix1+ip_lo+nr,ipix2+1); } else pixset.append(ipix1+ip_lo,ipix1+ip_hi+1); } } if ((rlat2>=pi) && (irmax+1<4*nside_)) // south pole in the disk { I sp,rp; bool dummy; get_ring_info_small(irmax+1,sp,rp,dummy); pixset.append(sp,npix_); } } else // scheme_==NEST { if (radius>=pi) // disk covers the whole sphere { pixset.append(0,npix_); return; } int oplus = 0; if (inclusive) { planck_assert ((I(1)<<(order_max-order_))>=fact, "invalid oversampling factor"); planck_assert ((fact&(fact-1))==0, "oversampling factor must be a power of 2"); oplus=ilog2(fact); } int omax=order_+oplus; // the order up to which we test vec3 vptg(ptg); arr > base(omax+1); arr crpdr(omax+1), crmdr(omax+1); double cosrad=cos(radius); for (int o=0; o<=omax; ++o) // prepare data at the required orders { base[o].Set(o,NEST); double dr=base[o].max_pixrad(); // safety distance crpdr[o] = (radius+dr>pi) ? -1. : cos(radius+dr); crmdr[o] = (radius-dr<0.) ? 1. : cos(radius-dr); } vector > stk; // stack for pixel numbers and their orders stk.reserve(12+3*omax); // reserve maximum size to avoid reallocation for (int i=0; i<12; ++i) // insert the 12 base pixels in reverse order stk.push_back(make_pair(I(11-i),0)); int stacktop=0; // a place to save a stack position while (!stk.empty()) // as long as there are pixels on the stack { // pop current pixel number and order from the stack I pix=stk.back().first; int o=stk.back().second; stk.pop_back(); double z,phi; base[o].pix2zphi(pix,z,phi); // cosine of angular distance between pixel center and disk center double cangdist=cosdist_zphi(vptg.z,ptg.phi,z,phi); if (cangdist>crpdr[o]) { int zone = (cangdist void T_Healpix_Base::query_disc (pointing ptg, double radius, rangeset &pixset) const { query_disc_internal (ptg, radius, 0, pixset); } template void T_Healpix_Base::query_disc_inclusive (pointing ptg, double radius, rangeset &pixset, int fact) const { planck_assert(fact>0,"fact must be a positive integer"); if ((sizeof(I)<8) && (((I(1)< base2(nside_,scheme_,SET_NSIDE); base2.query_disc_internal(ptg,radius,fact,pixset); return; } query_disc_internal (ptg, radius, fact, pixset); } template template void T_Healpix_Base::query_multidisc (const arr &norm, const arr &rad, int fact, rangeset &pixset) const { bool inclusive = (fact!=0); tsize nv=norm.size(); planck_assert(nv==rad.size(),"inconsistent input arrays"); pixset.clear(); if (scheme_==RING) { I fct=1; if (inclusive) { planck_assert (((I(1)<=fact, "invalid oversampling factor"); fct = fact; } T_Healpix_Base b2; double rpsmall, rpbig; if (fct>1) { b2.SetNside(fct*nside_,RING); rpsmall = b2.max_pixrad(); rpbig = max_pixrad(); } else rpsmall = rpbig = inclusive ? max_pixrad() : 0; I irmin=1, irmax=4*nside_-1; vector z0,xa,cosrsmall,cosrbig; vector ptg; vector cpix; for (tsize i=0; i1) cpix.push_back(zphi2pix(cth,pnt.phi)); xa.push_back(1./sqrt((1-cth)*(1+cth))); ptg.push_back(pnt); double rlat1 = pnt.theta - rsmall; double zmax = cos(rlat1); I irmin_t = (rlat1<=0) ? 1 : ring_above (zmax)+1; if ((fct>1) && (rlat1>0)) irmin_t=max(I(1),irmin_t-1); double rlat2 = pnt.theta + rsmall; double zmin = cos(rlat2); I irmax_t = (rlat2>=pi) ? 4*nside_-1 : ring_above (zmin); if ((fct>1) && (rlat2 irmin) irmin=irmin_t; } } for (I iz=irmin; iz<=irmax; ++iz) { double z=ring2z(iz); I ipix1,nr; bool shifted; get_ring_info_small(iz,ipix1,nr,shifted); double shift = shifted ? 0.5 : 0.; rangeset tr; tr.append(ipix1,ipix1+nr); for (tsize j=0; j(nr*inv_twopi*(ptg[j].phi-dphi) - shift)+1; I ip_hi = ifloor(nr*inv_twopi*(ptg[j].phi+dphi) - shift); if (fct>1) { while ((ip_lo<=ip_hi) && check_pixel_ring (*this,b2,ip_lo,nr,ipix1,fct,z0[j],ptg[j].phi,cosrsmall[j],cpix[j])) ++ip_lo; while ((ip_hi>ip_lo) && check_pixel_ring (*this,b2,ip_hi,nr,ipix1,fct,z0[j],ptg[j].phi,cosrsmall[j],cpix[j])) --ip_hi; } if (ip_hi>=nr) { ip_lo-=nr; ip_hi-=nr;} if (ip_lo<0) tr.remove(ipix1+ip_hi+1,ipix1+ip_lo+nr); else tr.intersect(ipix1+ip_lo,ipix1+ip_hi+1); } pixset.append(tr); } } else // scheme_ == NEST { int oplus = 0; if (inclusive) { planck_assert ((I(1)<<(order_max-order_))>=fact, "invalid oversampling factor"); planck_assert ((fact&(fact-1))==0, "oversampling factor must be a power of 2"); oplus=ilog2(fact); } int omax=order_+oplus; // the order up to which we test // TODO: ignore all disks with radius>=pi arr > base(omax+1); arr3 crlimit(omax+1,nv,3); for (int o=0; o<=omax; ++o) // prepare data at the required orders { base[o].Set(o,NEST); double dr=base[o].max_pixrad(); // safety distance for (tsize i=0; ipi) ? -1. : cos(rad[i]+dr); crlimit(o,i,1) = (o==0) ? cos(rad[i]) : crlimit(0,i,1); crlimit(o,i,2) = (rad[i]-dr<0.) ? 1. : cos(rad[i]-dr); } } vector > stk; // stack for pixel numbers and their orders stk.reserve(12+3*omax); // reserve maximum size to avoid reallocation for (int i=0; i<12; ++i) // insert the 12 base pixels in reverse order stk.push_back(make_pair(I(11-i),0)); int stacktop=0; // a place to save a stack position while (!stk.empty()) // as long as there are pixels on the stack { // pop current pixel number and order from the stack I pix=stk.back().first; int o=stk.back().second; stk.pop_back(); vec3 pv(base[o].pix2vec(pix)); tsize zone=3; for (tsize i=0; i void T_Healpix_Base::query_multidisc_general (const arr &norm, const arr &rad, bool inclusive, const vector &cmds, rangeset &pixset) const { tsize nv=norm.size(); planck_assert(nv==rad.size(),"inconsistent input arrays"); pixset.clear(); if (scheme_==RING) { planck_fail ("not yet implemented"); } else // scheme_ == NEST { int oplus=inclusive ? 2 : 0; int omax=min(order_max,order_+oplus); // the order up to which we test // TODO: ignore all disks with radius>=pi arr > base(omax+1); arr3 crlimit(omax+1,nv,3); for (int o=0; o<=omax; ++o) // prepare data at the required orders { base[o].Set(o,NEST); double dr=base[o].max_pixrad(); // safety distance for (tsize i=0; ipi) ? -1. : cos(rad[i]+dr); crlimit(o,i,1) = (o==0) ? cos(rad[i]) : crlimit(0,i,1); crlimit(o,i,2) = (rad[i]-dr<0.) ? 1. : cos(rad[i]-dr); } } vector > stk; // stack for pixel numbers and their orders stk.reserve(12+3*omax); // reserve maximum size to avoid reallocation for (int i=0; i<12; ++i) // insert the 12 base pixels in reverse order stk.push_back(make_pair(I(11-i),0)); int stacktop=0; // a place to save a stack position arr zone(nv); vector zstk; zstk.reserve(cmds.size()); while (!stk.empty()) // as long as there are pixels on the stack { // pop current pixel number and order from the stack I pix=stk.back().first; int o=stk.back().second; stk.pop_back(); vec3 pv(base[o].pix2vec(pix)); for (tsize i=0; i inline int T_Healpix_Base::spread_bits (int v) const { return utab[v&0xff] | (utab[(v>>8)&0xff]<<16); } template<> inline int64 T_Healpix_Base::spread_bits (int v) const { return int64(utab[ v &0xff]) | (int64(utab[(v>> 8)&0xff])<<16) | (int64(utab[(v>>16)&0xff])<<32) | (int64(utab[(v>>24)&0xff])<<48); } template<> inline int T_Healpix_Base::compress_bits (int v) const { int raw = (v&0x5555) | ((v&0x55550000)>>15); return ctab[raw&0xff] | (ctab[raw>>8]<<4); } template<> inline int T_Healpix_Base::compress_bits (int64 v) const { int64 raw = v&0x5555555555555555ull; raw|=raw>>15; return ctab[ raw &0xff] | (ctab[(raw>> 8)&0xff]<< 4) | (ctab[(raw>>32)&0xff]<<16) | (ctab[(raw>>40)&0xff]<<20); } template inline void T_Healpix_Base::nest2xyf (I pix, int &ix, int &iy, int &face_num) const { face_num = pix>>(2*order_); pix &= (npface_-1); ix = compress_bits(pix); iy = compress_bits(pix>>1); } template inline I T_Healpix_Base::xyf2nest (int ix, int iy, int face_num) const { return (I(face_num)<<(2*order_)) + spread_bits(ix) + (spread_bits(iy)<<1); } template void T_Healpix_Base::ring2xyf (I pix, int &ix, int &iy, int &face_num) const { I iring, iphi, kshift, nr; I nl2 = 2*nside_; if (pix>1; //counted from North pole iphi = (pix+1) - 2*iring*(iring-1); kshift = 0; nr = iring; face_num=(iphi-1)/nr; } else if (pix<(npix_-ncap_)) // Equatorial region { I ip = pix - ncap_; I tmp = (order_>=0) ? ip>>(order_+2) : ip/(4*nside_); iring = tmp+nside_; iphi = ip-tmp*4*nside_ + 1; kshift = (iring+nside_)&1; nr = nside_; I ire = iring-nside_+1, irm = nl2+2-ire; I ifm = iphi - ire/2 + nside_ -1, ifp = iphi - irm/2 + nside_ -1; if (order_>=0) { ifm >>= order_; ifp >>= order_; } else { ifm /= nside_; ifp /= nside_; } face_num = (ifp==ifm) ? (ifp|4) : ((ifp>1; //counted from South pole iphi = 4*iring + 1 - (ip - 2*iring*(iring-1)); kshift = 0; nr = iring; iring = 2*nl2-iring; face_num = 8 + (iphi-1)/nr; } I irt = iring - (jrll[face_num]*nside_) + 1; I ipt = 2*iphi- jpll[face_num]*nr - kshift -1; if (ipt>=nl2) ipt-=8*nside_; ix = (ipt-irt) >>1; iy = (-ipt-irt) >>1; } template I T_Healpix_Base::xyf2ring (int ix, int iy, int face_num) const { I nl4 = 4*nside_; I jr = (jrll[face_num]*nside_) - ix - iy - 1; I nr, kshift, n_before; bool shifted; get_ring_info_small(jr,n_before,nr,shifted); nr>>=2; kshift=1-shifted; I jp = (jpll[face_num]*nr + ix - iy + 1 + kshift) / 2; planck_assert(jp<=4*nr,"must not happen"); if (jp<1) jp+=nl4; // assumption: if this triggers, then nl4==4*nr return n_before + jp - 1; } template T_Healpix_Base::T_Healpix_Base () : order_(-1), nside_(0), npface_(0), ncap_(0), npix_(0), fact1_(0), fact2_(0), scheme_(RING) {} template void T_Healpix_Base::Set (int order, Healpix_Ordering_Scheme scheme) { planck_assert ((order>=0)&&(order<=order_max), "bad order"); order_ = order; nside_ = I(1)< void T_Healpix_Base::SetNside (I nside, Healpix_Ordering_Scheme scheme) { order_ = nside2order(nside); planck_assert ((scheme!=NEST) || (order_>=0), "SetNside: nside must be power of 2 for nested maps"); nside_ = nside; npface_ = nside_*nside_; ncap_ = (npface_-nside_)<<1; npix_ = 12*npface_; fact2_ = 4./npix_; fact1_ = (nside_<<1)*fact2_; scheme_ = scheme; } template double T_Healpix_Base::ring2z (I ring) const { if (ring I T_Healpix_Base::pix2ring (I pix) const { if (scheme_==RING) { if (pix>1; // counted from North pole else if (pix<(npix_-ncap_)) // Equatorial region return (pix-ncap_)/(4*nside_) + nside_; // counted from North pole else // South Polar cap return 4*nside_-((1+I(isqrt(2*(npix_-pix)-1)))>>1); } else { int face_num, ix, iy; nest2xyf(pix,ix,iy,face_num); return (I(jrll[face_num])< I T_Healpix_Base::nest2ring (I pix) const { planck_assert(order_>=0, "hierarchical map required"); int ix, iy, face_num; nest2xyf (pix, ix, iy, face_num); return xyf2ring (ix, iy, face_num); } template I T_Healpix_Base::ring2nest (I pix) const { planck_assert(order_>=0, "hierarchical map required"); int ix, iy, face_num; ring2xyf (pix, ix, iy, face_num); return xyf2nest (ix, iy, face_num); } template inline I T_Healpix_Base::nest_peano_helper (I pix, int dir) const { int face = pix>>(2*order_); I result = 0; uint8 path = peano_face2path[dir][face]; for (int shift=2*order_-2; shift>=0; shift-=2) { uint8 spix = uint8((pix>>shift) & 0x3); result <<= 2; result |= peano_subpix[dir][path][spix]; path=peano_subpath[dir][path][spix]; } return result + (I(peano_face2face[dir][face])<<(2*order_)); } template I T_Healpix_Base::nest2peano (I pix) const { return nest_peano_helper(pix,0); } template I T_Healpix_Base::peano2nest (I pix) const { return nest_peano_helper(pix,1); } template I T_Healpix_Base::loc2pix (double z, double phi, double sth, bool have_sth) const { double za = abs(z); double tt = fmodulo(phi*inv_halfpi,4.0); // in [0,4) if (scheme_==RING) { if (za<=twothird) // Equatorial region { I nl4 = 4*nside_; double temp1 = nside_*(0.5+tt); double temp2 = nside_*z*0.75; I jp = I(temp1-temp2); // index of ascending edge line I jm = I(temp1+temp2); // index of descending edge line // ring number counted from z=2/3 I ir = nside_ + 1 + jp - jm; // in {1,2n+1} I kshift = 1-(ir&1); // kshift=1 if ir even, 0 otherwise I t1 = jp+jm-nside_+kshift+1+nl4+nl4; I ip = (order_>0) ? (t1>>1)&(nl4-1) : ((t1>>1)%nl4); // in {0,4n-1} return ncap_ + (ir-1)*nl4 + ip; } else // North & South polar caps { double tp = tt-I(tt); double tmp = ((za<0.99)||(!have_sth)) ? nside_*sqrt(3*(1-za)) : nside_*sth/sqrt((1.+za)/3.); I jp = I(tp*tmp); // increasing edge line index I jm = I((1.0-tp)*tmp); // decreasing edge line index I ir = jp+jm+1; // ring number counted from the closest pole I ip = I(tt*ir); // in {0,4*ir-1} planck_assert((ip>=0)&&(ip<4*ir),"must not happen"); //ip %= 4*ir; return (z>0) ? 2*ir*(ir-1) + ip : npix_ - 2*ir*(ir+1) + ip; } } else // scheme_ == NEST { if (za<=twothird) // Equatorial region { double temp1 = nside_*(0.5+tt); double temp2 = nside_*(z*0.75); I jp = I(temp1-temp2); // index of ascending edge line I jm = I(temp1+temp2); // index of descending edge line I ifp = jp >> order_; // in {0,4} I ifm = jm >> order_; int face_num = (ifp==ifm) ? (ifp|4) : ((ifp 2/3 { int ntt = min(3,int(tt)); double tp = tt-ntt; double tmp = ((za<0.99)||(!have_sth)) ? nside_*sqrt(3*(1-za)) : nside_*sth/sqrt((1.+za)/3.); I jp = I(tp*tmp); // increasing edge line index I jm = I((1.0-tp)*tmp); // decreasing edge line index jp=min(jp,nside_-1); // for points too close to the boundary jm=min(jm,nside_-1); return (z>=0) ? xyf2nest(nside_-jm -1,nside_-jp-1,ntt) : xyf2nest(jp,jm,ntt+8); } } } template void T_Healpix_Base::pix2loc (I pix, double &z, double &phi, double &sth, bool &have_sth) const { have_sth=false; if (scheme_==RING) { if (pix>1; // counted from North pole I iphi = (pix+1) - 2*iring*(iring-1); double tmp=(iring*iring)*fact2_; z = 1.0 - tmp; if (z>0.99) { sth=sqrt(tmp*(2.-tmp)); have_sth=true; } phi = (iphi-0.5) * halfpi/iring; } else if (pix<(npix_-ncap_)) // Equatorial region { I nl4 = 4*nside_; I ip = pix - ncap_; I tmp = (order_>=0) ? ip>>(order_+2) : ip/nl4; I iring = tmp + nside_, iphi = ip-nl4*tmp+1; // 1 if iring+nside is odd, 1/2 otherwise double fodd = ((iring+nside_)&1) ? 1 : 0.5; z = (2*nside_-iring)*fact1_; phi = (iphi-fodd) * pi*0.75*fact1_; } else // South Polar cap { I ip = npix_ - pix; I iring = (1+I(isqrt(2*ip-1)))>>1; // counted from South pole I iphi = 4*iring + 1 - (ip - 2*iring*(iring-1)); double tmp=(iring*iring)*fact2_; z = tmp - 1.0; if (z<-0.99) { sth=sqrt(tmp*(2.-tmp)); have_sth=true; } phi = (iphi-0.5) * halfpi/iring; } } else { int face_num, ix, iy; nest2xyf(pix,ix,iy,face_num); I jr = (I(jrll[face_num])<0.99) { sth=sqrt(tmp*(2.-tmp)); have_sth=true; } } else if (jr > 3*nside_) { nr = nside_*4-jr; double tmp=(nr*nr)*fact2_; z = tmp - 1; if (z<-0.99) { sth=sqrt(tmp*(2.-tmp)); have_sth=true; } } else { nr = nside_; z = (2*nside_-jr)*fact1_; } I tmp=I(jpll[face_num])*nr+ix-iy; planck_assert(tmp<8*nr,"must not happen"); if (tmp<0) tmp+=8*nr; phi = (nr==nside_) ? 0.75*halfpi*tmp*fact1_ : (0.5*halfpi*tmp)/nr; } } template template void T_Healpix_Base::query_polygon_internal (const vector &vertex, int fact, rangeset &pixset) const { bool inclusive = (fact!=0); tsize nv=vertex.size(); tsize ncirc = inclusive ? nv+1 : nv; planck_assert(nv>=3,"not enough vertices in polygon"); arr vv(nv); for (tsize i=0; i normal(ncirc); int flip=0; for (tsize i=0; i1e-10,"degenerate corner"); if (i==0) flip = (hnd<0.) ? -1 : 1; else planck_assert(flip*hnd>0,"polygon is not convex"); normal[i]*=flip/normal[i].Length(); } arr rad(ncirc,halfpi); if (inclusive) { double cosrad; find_enclosing_circle (vv, normal[nv], cosrad); rad[nv]=acos(cosrad); } query_multidisc(normal,rad,fact,pixset); } template void T_Healpix_Base::query_polygon (const vector &vertex, rangeset &pixset) const { query_polygon_internal(vertex, 0, pixset); } template void T_Healpix_Base::query_polygon_inclusive (const vector &vertex, rangeset &pixset, int fact) const { planck_assert(fact>0,"fact must be a positive integer"); if ((sizeof(I)<8) && (((I(1)< base2(nside_,scheme_,SET_NSIDE); base2.query_polygon_internal(vertex,fact,pixset); return; } query_polygon_internal(vertex, fact, pixset); } template void T_Healpix_Base::query_strip_internal (double theta1, double theta2, bool inclusive, rangeset &pixset) const { if (scheme_==RING) { I ring1 = max(I(1),1+ring_above(cos(theta1))), ring2 = min(4*nside_-1,ring_above(cos(theta2))); if (inclusive) { ring1 = max(I(1),ring1-1); ring2 = min(4*nside_-1,ring2+1); } I sp1,rp1,sp2,rp2; bool dummy; get_ring_info_small(ring1,sp1,rp1,dummy); get_ring_info_small(ring2,sp2,rp2,dummy); I pix1 = sp1, pix2 = sp2+rp2; if (pix1<=pix2) pixset.append(pix1,pix2); } else planck_fail("query_strip not yet implemented for NESTED"); } template void T_Healpix_Base::query_strip (double theta1, double theta2, bool inclusive, rangeset &pixset) const { pixset.clear(); if (theta1 ps2; query_strip_internal(theta1,pi,inclusive,ps2); pixset.append(ps2); } } template inline void T_Healpix_Base::get_ring_info_small (I ring, I &startpix, I &ringpix, bool &shifted) const { if (ring < nside_) { shifted = true; ringpix = 4*ring; startpix = 2*ring*(ring-1); } else if (ring < 3*nside_) { shifted = ((ring-nside_) & 1) == 0; ringpix = 4*nside_; startpix = ncap_ + (ring-nside_)*ringpix; } else { shifted = true; I nr= 4*nside_-ring; ringpix = 4*nr; startpix = npix_-2*nr*(nr+1); } } template void T_Healpix_Base::get_ring_info (I ring, I &startpix, I &ringpix, double &costheta, double &sintheta, bool &shifted) const { I northring = (ring>2*nside_) ? 4*nside_-ring : ring; if (northring < nside_) { double tmp = northring*northring*fact2_; costheta = 1 - tmp; sintheta = sqrt(tmp*(2-tmp)); ringpix = 4*northring; shifted = true; startpix = 2*northring*(northring-1); } else { costheta = (2*nside_-northring)*fact1_; sintheta = sqrt((1+costheta)*(1-costheta)); ringpix = 4*nside_; shifted = ((northring-nside_) & 1) == 0; startpix = ncap_ + (northring-nside_)*ringpix; } if (northring != ring) // southern hemisphere { costheta = -costheta; startpix = npix_ - startpix - ringpix; } } template void T_Healpix_Base::get_ring_info2 (I ring, I &startpix, I &ringpix, double &theta, bool &shifted) const { I northring = (ring>2*nside_) ? 4*nside_-ring : ring; if (northring < nside_) { double tmp = northring*northring*fact2_; double costheta = 1 - tmp; double sintheta = sqrt(tmp*(2-tmp)); theta = atan2(sintheta,costheta); ringpix = 4*northring; shifted = true; startpix = 2*northring*(northring-1); } else { theta = acos((2*nside_-northring)*fact1_); ringpix = 4*nside_; shifted = ((northring-nside_) & 1) == 0; startpix = ncap_ + (northring-nside_)*ringpix; } if (northring != ring) // southern hemisphere { theta = pi-theta; startpix = npix_ - startpix - ringpix; } } template void T_Healpix_Base::neighbors (I pix, fix_arr &result) const { int ix, iy, face_num; (scheme_==RING) ? ring2xyf(pix,ix,iy,face_num) : nest2xyf(pix,ix,iy,face_num); const I nsm1 = nside_-1; if ((ix>0)&&(ix0)&&(iy=nside_) { x-=nside_; nbnum+=1; } if (y<0) { y+=nside_; nbnum-=3; } else if (y>=nside_) { y-=nside_; nbnum+=3; } int f = nb_facearray[nbnum][face_num]; if (f>=0) { int bits = nb_swaparray[nbnum][face_num>>2]; if (bits&1) x=nside_-x-1; if (bits&2) y=nside_-y-1; if (bits&4) std::swap(x,y); result[i] = (scheme_==RING) ? xyf2ring(x,y,f) : xyf2nest(x,y,f); } else result[i] = -1; } } } template void T_Healpix_Base::get_interpol (const pointing &ptg, fix_arr &pix, fix_arr &wgt) const { planck_assert((ptg.theta>=0)&&(ptg.theta<=pi),"invalid theta value"); double z = cos (ptg.theta); I ir1 = ring_above(z); I ir2 = ir1+1; double theta1, theta2, w1, tmp, dphi; I sp,nr; bool shift; I i1,i2; if (ir1>0) { get_ring_info2 (ir1, sp, nr, theta1, shift); dphi = twopi/nr; tmp = (ptg.phi/dphi - .5*shift); i1 = (tmp<0) ? I(tmp)-1 : I(tmp); w1 = (ptg.phi-(i1+.5*shift)*dphi)/dphi; i2 = i1+1; if (i1<0) i1 +=nr; if (i2>=nr) i2 -=nr; pix[0] = sp+i1; pix[1] = sp+i2; wgt[0] = 1-w1; wgt[1] = w1; } if (ir2<(4*nside_)) { get_ring_info2 (ir2, sp, nr, theta2, shift); dphi = twopi/nr; tmp = (ptg.phi/dphi - .5*shift); i1 = (tmp<0) ? I(tmp)-1 : I(tmp); w1 = (ptg.phi-(i1+.5*shift)*dphi)/dphi; i2 = i1+1; if (i1<0) i1 +=nr; if (i2>=nr) i2 -=nr; pix[2] = sp+i1; pix[3] = sp+i2; wgt[2] = 1-w1; wgt[3] = w1; } if (ir1==0) { double wtheta = ptg.theta/theta2; wgt[2] *= wtheta; wgt[3] *= wtheta; double fac = (1-wtheta)*0.25; wgt[0] = fac; wgt[1] = fac; wgt[2] += fac; wgt[3] +=fac; pix[0] = (pix[2]+2)&3; pix[1] = (pix[3]+2)&3; } else if (ir2==4*nside_) { double wtheta = (ptg.theta-theta1)/(pi-theta1); wgt[0] *= (1-wtheta); wgt[1] *= (1-wtheta); double fac = wtheta*0.25; wgt[0] += fac; wgt[1] += fac; wgt[2] = fac; wgt[3] =fac; pix[2] = ((pix[0]+2)&3)+npix_-4; pix[3] = ((pix[1]+2)&3)+npix_-4; } else { double wtheta = (ptg.theta-theta1)/(theta2-theta1); wgt[0] *= (1-wtheta); wgt[1] *= (1-wtheta); wgt[2] *= wtheta; wgt[3] *= wtheta; } if (scheme_==NEST) for (tsize m=0; m void T_Healpix_Base::swap (T_Healpix_Base &other) { std::swap(order_,other.order_); std::swap(nside_,other.nside_); std::swap(npface_,other.npface_); std::swap(ncap_,other.ncap_); std::swap(npix_,other.npix_); std::swap(fact1_,other.fact1_); std::swap(fact2_,other.fact2_); std::swap(scheme_,other.scheme_); } template double T_Healpix_Base::max_pixrad() const { vec3 va,vb; va.set_z_phi (2./3., pi/(4*nside_)); double t1 = 1.-1./nside_; t1*=t1; vb.set_z_phi (1-t1/3, 0); return v_angle(va,vb); } template double T_Healpix_Base::max_pixrad(I ring) const { if (ring>=2*nside_) ring=4*nside_-ring; double z=ring2z(ring), z_up=(ring>1) ? ring2z(ring-1) : 1.; vec3 mypos, uppos; uppos.set_z_phi(z_up,0); if (ring<=nside_) { mypos.set_z_phi(z,pi/(4*ring)); return v_angle(mypos,uppos); } mypos.set_z_phi(z,0); double vdist=v_angle(mypos,uppos); double hdist=sqrt(1.-z*z)*pi/(4*nside_); return max(hdist,vdist); } template void T_Healpix_Base::xyf2loc (double x, double y, int face, double &z, double &phi, double &sth, bool &have_sth) const { have_sth = false; double jr = jrll[face] - x - y; double nr; if (jr<1) { nr = jr; double tmp = nr*nr/3.; z = 1 - tmp; if (z > 0.99) { sth = std::sqrt(tmp*(2.0-tmp)); have_sth = true; } } else if (jr>3) { nr = 4-jr; double tmp = nr*nr/3.; z = tmp - 1; if (z<-0.99) { sth = std::sqrt(tmp*(2.-tmp)); have_sth = true; } } else { nr = 1; z = (2-jr)*2./3.; } double tmp=jpll[face]*nr+x-y; if (tmp<0) tmp+=8; if (tmp>=8) tmp-=8; phi = (nr<1e-15) ? 0 : (0.5*halfpi*tmp)/nr; } namespace { vec3 locToVec3 (double z, double phi, double sth, bool have_sth) { if (have_sth) return vec3(sth*cos(phi),sth*sin(phi),z); else { vec3 res; res.set_z_phi (z, phi); return res; } } } // unnamed namespace template void T_Healpix_Base::boundaries(I pix, tsize step, vector &out) const { out.resize(4*step); int ix, iy, face; pix2xyf(pix, ix, iy, face); double dc = 0.5 / nside_; double xc = (ix + 0.5)/nside_, yc = (iy + 0.5)/nside_; double d = 1.0/(step*nside_); for (tsize i=0; i arr T_Healpix_Base::swap_cycles() const { planck_assert(order_>=0, "need hierarchical map"); planck_assert(order_<=13, "map too large"); arr result(swap_clen[order_]); tsize ofs=0; for (int m=0; m; template class T_Healpix_Base; healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/Healpix_cxx.dox0000650000175000017530000001250112255154051027646 0ustar zoncaplanck00000000000000/*! \mainpage HEALPix C++ documentation
    • \ref components "Programming interface"
    • \ref facilities "Facilities"
    */ /*! \page components Code components Classes: - Healpix_Base contains all functionality related to the HEALPix pixelisation which does not require actual map data. - Healpix_Base2 is analogous to Healpix_Base, but allows for much higher resolutions. - Healpix_Map is derived from Healpix_Base and implements additional functionality like change of the ordering scheme, up- and degrading and interpolation. - Alm is used to store spherical harmonic coefficients. - PowSpec is used to store \f$C_l\f$ coefficients. Conversions between different data types: - \ref alm_healpix_group "HEALPix maps <-> a_lm". - \ref alm_ps_group "power spectra <-> a_lm". FITS I/O: - for \ref healpix_map_fitsio_group "HEALPix Maps" - for \ref alm_fitsio_group "spherical harmonic coefficients" - for \ref powspec_fitsio_group "power spectra" */ /*! \page facilities HEALPix C++ facilities \section syn_alm_cxx This program reads a set of \f$C_l\f$ from disk and converts it to a set of \f$a_{lm}\f$. \verbinclude syn_alm_cxx.par.txt \section alm2map_cxx This program reads a set of \f$a_{lm}\f$ from disk and converts them to a HEALPix map. \verbinclude alm2map_cxx.par.txt \section anafast_cxx This program performs harmonic analysis of a HEALPix map up to a user-specified maximum spherical harmonic order \f$l_{\mbox{max}}\f$. The integrals are computed on the whole sphere. Scalar, or scalar and tensor, spherical harmonic coefficients are evaluated from the map(s) if the input provides, respectively, only the temperature, or temperature and polarisation maps. The total operation count scales as \f${\cal {O}}(N_{\mbox{pix}}^{3/2})\f$ with a prefactor depending on \f$l_{\mbox{max}}\f$. Anafast_cxx reads a file containing the map(s) and produces a file containing the temperature power spectrum \f$C^T_l\f$ and, if requested, also the polarisation power spectra \f$C^E_l\f$, \f$C^B_l\f$ and \f$C^{T\times E}_l\f$. The \f$a_{lm}\f$ coefficients computed during the execution also can be written to a file if requested. Anafast_cxx executes an approximate, discrete point-set quadrature on a sphere sampled at the HEALPix pixel centers. Spherical harmonic transforms are computed using recurrence relations for Legendre polynomials on co-latitude (\f$\vartheta\f$) and Fast Fourier transforms on longitude (\f$\varphi\f$). Anafast permits two execution options which allow a significant improvement of accuracy of the approximate quadrature performed by this facility: - An improved analysis using the provided ring weights, which correct the quadrature on latitude, and/or - An iterative scheme using in succession several backward and forward harmonic transforms of the maps. \verbinclude anafast_cxx.par.txt \section map2tga This program reads in a HEALPix sky map in FITS format and generates an image in TGA format. map2tga allows the selection of the projection scheme (Mollweide or Gnomonic for small patches of the sky), color table, color bar inclusion, linear or log scaling, maximum and minimum range for the plot and plot-title. The facility provides a command-line interface, but can also read a parameter file. \verbinclude map2tga.par.txt \section rotalm_cxx Performs a coordinate transformation on a set of \f$a_{lm}\f$. \verbatim Usage: rotalm_cxx Transform 1: Equatorial (2000) -> Galactic (2000) 2: Galactic (2000) -> Equatorial (2000) 3: Equatorial (2000) -> Ecliptic (2000) 4: Ecliptic (2000) -> Equatorial (2000) 5: Ecliptic (2000) -> Galactic (2000) 6: Galactic (2000) -> Ecliptic (2000) 7: Equatorial (1950) -> Galactic (1950) 8: Galactic (1950) -> Equatorial (1950) 9: Equatorial (1950) -> Ecliptic (1950) 10: Ecliptic (1950) -> Equatorial (1950) 11: Ecliptic (1950) -> Galactic (1950) 12: Galactic (1950) -> Ecliptic (1950) \endverbatim \section mult_alm This program reads a set of (unpolarised or polarised) \f$a_{lm}\f$, removes pixel window functions and/or Gaussian beams, applies different pixel window functions or Gaussian beams, and outputs the result. \verbinclude mult_alm.par.txt \section smoothing_cxx This program reads a (unpolarised or polarised) HEALPix map, converts it to \f$a_{lm}\f$, performs a smoothing operation with a Gaussian beam, converts the \f$a_{lm}\f$ back to a map and outputs the result. \verbinclude smoothing_cxx.par.txt \section calc_powspec This program reads one or two sets of \f$a_{lm}\f$, extracts the (unpolarised or polarised) power spectrum or the unpolarised cross power spectrum, and outputs the result. \verbatim Usage: calc_powspec [] \endverbatim \section median_filter_cxx This program inputs a HEALPix map, runs a median filter with the desired radius on it and saves the result to another file. \verbatim Usage: median_filter_cxx \endverbatim */ healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/median_filter_cxx.cc0000650000175000017530000000030412255154051030647 0ustar zoncaplanck00000000000000#include "levels_facilities.h" #include "error_handling.h" int main (int argc, const char **argv) { PLANCK_DIAGNOSIS_BEGIN median_filter_cxx_module (argc, argv); PLANCK_DIAGNOSIS_END } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/healpix_data_io.h0000650000175000017530000000332512255154051030145 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2003, 2005 Max-Planck-Society * Author: Martin Reinecke */ #ifndef HEALPIX_DATA_IO_H #define HEALPIX_DATA_IO_H #include class paramfile; template class arr; void read_weight_ring (const std::string &dir, int nside, arr &weight); void get_ring_weights (paramfile ¶ms, int nside, arr &weight); void read_pixwin (const std::string &dir, int nside, arr &temp); void read_pixwin (const std::string &dir, int nside, arr &temp, arr &pol); void get_pixwin (paramfile ¶ms, int lmax, int nside, arr &pixwin); void get_pixwin (paramfile ¶ms, int lmax, int nside, arr &pixwin, arr &pixwin_pol); #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/udgrade_harmonic_cxx.cc0000650000175000017530000000030712255154051031343 0ustar zoncaplanck00000000000000#include "levels_facilities.h" #include "error_handling.h" int main (int argc, const char **argv) { PLANCK_DIAGNOSIS_BEGIN udgrade_harmonic_cxx_module (argc, argv); PLANCK_DIAGNOSIS_END } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/hotspots_cxx_module.cc0000650000175000017530000000601312255154051031300 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2003-2010 Max-Planck-Society * Author: Martin Reinecke */ #include #include "paramfile.h" #include "healpix_map.h" #include "healpix_map_fitsio.h" #include "fitshandle.h" #include "levels_facilities.h" #include "announce.h" using namespace std; int hotspots_cxx_module (int argc, const char **argv) { module_startup ("hotspots_cxx", argc, argv); paramfile params (getParamsFromCmdline(argc,argv)); string infile = params.find("infile"); string mapfile = params.find("outmap",""); bool have_mapfile = mapfile!=""; string minfile = params.find("minfile",""); bool have_minfile = minfile!=""; string maxfile = params.find("maxfile",""); bool have_maxfile = maxfile!=""; planck_assert (have_mapfile || have_minfile || have_maxfile, "no output file specified"); Healpix_Map inmap; read_Healpix_map_from_fits(infile,inmap,1,2); Healpix_Map outmap; if (have_mapfile) outmap.Set(inmap.Order(),inmap.Scheme()); ofstream minout, maxout; if (have_minfile) minout.open(minfile.c_str()); if (have_maxfile) maxout.open(maxfile.c_str()); fix_arr nb; // FIXME: This should be parallelized for (int m=0; m(value, Healpix_undef)) { inmap.neighbors(m,nb); bool ismax=true, ismin=true; for (tsize n=0; n=0) { float nbval = inmap[nb[n]]; if (!approx(nbval, Healpix_undef)) { if (nbval>=value) ismax=false; if (nbval<=value) ismin=false; } } } if (have_mapfile) outmap[m] = float((ismax||ismin) ? value : Healpix_undef); if (have_minfile && ismin) minout << m << " " << value << endl; if (have_maxfile && ismax) maxout << m << " " << value << endl; } } if (have_mapfile) write_Healpix_map_to_fits (mapfile,outmap,PLANCK_FLOAT32); return 0; } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/alm_powspec_tools.cc0000650000175000017530000003246112255154051030725 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2003-2011 Max-Planck-Society * Author: Martin Reinecke */ #include "alm_powspec_tools.h" #include "string_utils.h" #include "alm.h" #include "planck_rng.h" #include "powspec.h" #include "xcomplex.h" #include "rotmatrix.h" #include "openmp_support.h" #include "wigner.h" #include "lsconstants.h" using namespace std; template void create_alm (const PowSpec &powspec, Alm > &alm, planck_rng &rng) { int lmax = alm.Lmax(); int mmax = alm.Mmax(); const double hsqrt2 = 1/sqrt(2.); for (int l=0; l<=lmax; ++l) { double rms_tt = sqrt(powspec.tt(l)); double zeta1_r = rng.rand_gauss(); alm(l,0) = T(zeta1_r * rms_tt); for (int m=1; m<=min(l,mmax); ++m) { zeta1_r = rng.rand_gauss()*hsqrt2; double zeta1_i = rng.rand_gauss()*hsqrt2; alm(l,m).Set (T(zeta1_r*rms_tt), T(zeta1_i*rms_tt)); } } } template void create_alm (const PowSpec &powspec, Alm > &alm, planck_rng &rng); template void create_alm (const PowSpec &powspec, Alm > &alm, planck_rng &rng); template void create_alm_pol (const PowSpec &powspec, Alm > &almT, Alm > &almG, Alm > &almC, planck_rng &rng) { int lmax = almT.Lmax(); int mmax = almT.Mmax(); const double hsqrt2 = 1/sqrt(2.); for (int l=0; l<=lmax; ++l) { double rms_tt=0, rms_g1=0; if (powspec.tt(l) != 0) { rms_tt = sqrt(powspec.tt(l)); rms_g1 = powspec.tg(l)/rms_tt; } double zeta1_r = rng.rand_gauss(); almT(l,0) = T(zeta1_r * rms_tt); almG(l,0) = T(zeta1_r * rms_g1); for (int m=1; m<=min(l,mmax); ++m) { zeta1_r = rng.rand_gauss()*hsqrt2; double zeta1_i = rng.rand_gauss()*hsqrt2; almT(l,m).Set (T(zeta1_r*rms_tt), T(zeta1_i*rms_tt)); almG(l,m).Set (T(zeta1_r*rms_g1), T(zeta1_i*rms_g1)); } } for (int l=0; l<=lmax; ++l) { double rms_g2 = 0; double rms_cc = 0; if (powspec.tt(l) != 0) { rms_g2 = powspec.gg(l) - (powspec.tg(l)/powspec.tt(l))*powspec.tg(l); if (rms_g2 <= 0) { planck_assert (abs(rms_g2) <= 1e-8*abs(powspec.gg(l)), "Inconsistent TT, GG and TG spectra at l="+dataToString(l)); rms_g2 = 0; } rms_g2 = sqrt(rms_g2); rms_cc = sqrt(powspec.cc(l)); } almG(l,0) += T(rng.rand_gauss()*rms_g2); almC(l,0) = T(rng.rand_gauss()*rms_cc); for (int m=1; m<=min(l,mmax); ++m) { double zeta2_r = rng.rand_gauss()*hsqrt2; double zeta2_i = rng.rand_gauss()*hsqrt2; double zeta3_r = rng.rand_gauss()*hsqrt2; double zeta3_i = rng.rand_gauss()*hsqrt2; almG(l,m) += xcomplex (T(zeta2_r*rms_g2),T(zeta2_i*rms_g2)); almC(l,m).Set (T(zeta3_r*rms_cc),T(zeta3_i*rms_cc)); } } } template void create_alm_pol (const PowSpec &powspec, Alm > &almT, Alm > &almG, Alm > &almC, planck_rng &rng); template void create_alm_pol (const PowSpec &powspec, Alm > &almT, Alm > &almG, Alm > &almC, planck_rng &rng); template void extract_crosspowspec (const Alm > &alm1, const Alm > &alm2,PowSpec &powspec) { planck_assert (alm1.conformable(alm2), "a_lm are not conformable"); arr tt(alm1.Lmax()+1); for (int l=0; l<=alm1.Lmax(); ++l) { tt[l] = alm1(l,0).re*alm2(l,0).re; int limit = min(l,alm1.Mmax()); for (int m=1; m<=limit; ++m) tt[l] += 2 * (alm1(l,m).re*alm2(l,m).re + alm1(l,m).im*alm2(l,m).im); tt[l] /= (2*l+1); } powspec.Set(tt); } template void extract_crosspowspec (const Alm > &alm1, const Alm > &alm2, PowSpec &powspec); template void extract_crosspowspec (const Alm > &alm1, const Alm > &alm2, PowSpec &powspec); template void extract_powspec (const Alm > &alm, PowSpec &powspec) { extract_crosspowspec (alm,alm,powspec); } template void extract_powspec (const Alm > &alm, PowSpec &powspec); template void extract_powspec (const Alm > &alm, PowSpec &powspec); namespace { template void extract_crosspowspec (const Alm > &almT1, const Alm > &almG1, const Alm > &almC1, const Alm > &almT2, const Alm > &almG2, const Alm > &almC2, PowSpec &powspec) { planck_assert (almT1.conformable(almG1) && almT1.conformable(almC1) && almT1.conformable(almT2) && almT1.conformable(almG2) && almT1.conformable(almC2), "a_lm are not conformable"); int lmax = almT1.Lmax(); arr tt(lmax+1), gg(lmax+1), cc(lmax+1), tg(lmax+1), tc(lmax+1), gc(lmax+1); for (int l=0; l<=lmax; ++l) { tt[l] = almT1(l,0).re*almT2(l,0).re; gg[l] = almG1(l,0).re*almG2(l,0).re; cc[l] = almC1(l,0).re*almC2(l,0).re; tg[l] = almT1(l,0).re*almG2(l,0).re; tc[l] = almT1(l,0).re*almC2(l,0).re; gc[l] = almG1(l,0).re*almC2(l,0).re; int limit = min(l,almT1.Mmax()); for (int m=1; m<=limit; ++m) { tt[l] += 2 * (almT1(l,m).re*almT2(l,m).re + almT1(l,m).im*almT2(l,m).im); gg[l] += 2 * (almG1(l,m).re*almG2(l,m).re + almG1(l,m).im*almG2(l,m).im); cc[l] += 2 * (almC1(l,m).re*almC2(l,m).re + almC1(l,m).im*almC2(l,m).im); tg[l] += 2 * (almT1(l,m).re*almG2(l,m).re + almT1(l,m).im*almG2(l,m).im); tc[l] += 2 * (almT1(l,m).re*almC2(l,m).re + almT1(l,m).im*almC2(l,m).im); gc[l] += 2 * (almG1(l,m).re*almC2(l,m).re + almG1(l,m).im*almC2(l,m).im); } tt[l] /= (2*l+1); gg[l] /= (2*l+1); cc[l] /= (2*l+1); tg[l] /= (2*l+1); tc[l] /= (2*l+1); gc[l] /= (2*l+1); } powspec.Set(tt,gg,cc,tg,tc,gc); } } // unnamed namespace template void extract_powspec (const Alm > &almT, const Alm > &almG, const Alm > &almC, PowSpec &powspec) { extract_crosspowspec(almT,almG,almC,almT,almG,almC,powspec); } template void extract_powspec (const Alm > &almT, const Alm > &almG, const Alm > &almC, PowSpec &powspec); template void extract_powspec (const Alm > &almT, const Alm > &almG, const Alm > &almC, PowSpec &powspec); template void smoothWithGauss (Alm > &alm, double fwhm) { int fct = (fwhm>=0) ? 1 : -1; double sigma = fwhm*fwhm2sigma; arr gb(alm.Lmax()+1); for (int l=0; l<=alm.Lmax(); ++l) gb[l] = exp(-.5*fct*l*(l+1)*sigma*sigma); alm.ScaleL(gb); } template void smoothWithGauss (Alm > &alm, double fwhm); template void smoothWithGauss (Alm > &alm, double fwhm); template void smoothWithGauss (Alm > &almT, Alm > &almG, Alm > &almC, double fwhm) { int fct = (fwhm>=0) ? 1 : -1; double sigma = fwhm*fwhm2sigma; double fact_pol = exp(2*fct*sigma*sigma); arr gb(almT.Lmax()+1); for (int l=0; l<=almT.Lmax(); ++l) gb[l] = exp(-.5*fct*l*(l+1)*sigma*sigma); almT.ScaleL(gb); for (int l=0; l<=almT.Lmax(); ++l) gb[l] *= fact_pol; almG.ScaleL(gb); almC.ScaleL(gb); } template void smoothWithGauss (Alm > &almT, Alm > &almG, Alm > &almC, double fwhm); template void smoothWithGauss (Alm > &almT, Alm > &almG, Alm > &almC, double fwhm); template void rotate_alm (Alm > &alm, double psi, double theta, double phi) { planck_assert (alm.Lmax()==alm.Mmax(), "rotate_alm: lmax must be equal to mmax"); int lmax=alm.Lmax(); arr > exppsi(lmax+1), expphi(lmax+1); for (int m=0; m<=lmax; ++m) { exppsi[m].Set (cos(psi*m),-sin(psi*m)); expphi[m].Set (cos(phi*m),-sin(phi*m)); } wigner_d_risbo_openmp rec(lmax,theta); arr > almtmp(lmax+1); for (int l=0; l<=lmax; ++l) { const arr2 &d(rec.recurse()); for (int m=0; m<=l; ++m) almtmp[m] = xcomplex(alm(l,0))*d[l][l+m]; #pragma omp parallel { int64 lo,hi; openmp_calc_share(0,l+1,lo,hi); bool flip = true; for (int mm=1; mm<=l; ++mm) { xcomplex t1 = xcomplex(alm(l,mm))*exppsi[mm]; bool flip2 = ((mm+lo)&1) ? true : false; for (int m=lo; m(almtmp[m]*expphi[m]); } } template void rotate_alm (Alm > &alm, double psi, double theta, double phi); template void rotate_alm (Alm > &alm, double psi, double theta, double phi); template void rotate_alm (Alm > &almT, Alm > &almG, Alm > &almC, double psi, double theta, double phi) { planck_assert (almT.Lmax()==almT.Mmax(), "rotate_alm: lmax must be equal to mmax"); planck_assert (almG.conformable(almT) && almC.conformable(almT), "rotate_alm: a_lm are not conformable"); int lmax=almT.Lmax(); arr > exppsi(lmax+1), expphi(lmax+1); for (int m=0; m<=lmax; ++m) { exppsi[m].Set (cos(psi*m),-sin(psi*m)); expphi[m].Set (cos(phi*m),-sin(phi*m)); } wigner_d_risbo_openmp rec(lmax,theta); arr > almtmpT(lmax+1), almtmpG(lmax+1), almtmpC(lmax+1); for (int l=0; l<=lmax; ++l) { const arr2 &d(rec.recurse()); for (int m=0; m<=l; ++m) { almtmpT[m] = xcomplex(almT(l,0))*d[l][m+l]; almtmpG[m] = xcomplex(almG(l,0))*d[l][m+l]; almtmpC[m] = xcomplex(almC(l,0))*d[l][m+l]; } #pragma omp parallel { int64 lo,hi; openmp_calc_share(0,l+1,lo,hi); bool flip = true; for (int mm=1; mm<=l; ++mm) { xcomplex t1T = xcomplex(almT(l,mm))*exppsi[mm]; xcomplex t1G = xcomplex(almG(l,mm))*exppsi[mm]; xcomplex t1C = xcomplex(almC(l,mm))*exppsi[mm]; bool flip2 = ((mm+lo)&1) ? true : false; for (int m=lo; m(almtmpT[m]*expphi[m]); almG(l,m) = xcomplex(almtmpG[m]*expphi[m]); almC(l,m) = xcomplex(almtmpC[m]*expphi[m]); } } } template void rotate_alm (Alm > &almT, Alm > &almG, Alm > &almC, double psi, double theta, double phi); template void rotate_alm (Alm > &almT, Alm > &almG, Alm > &almC, double psi, double theta, double phi); template void rotate_alm (Alm > &alm, const rotmatrix &mat) { double a1, a2, a3; mat.Extract_CPAC_Euler_Angles (a1, a2, a3); rotate_alm (alm, a3, a2, a1); } template void rotate_alm (Alm > &alm, const rotmatrix &mat); template void rotate_alm (Alm > &alm, const rotmatrix &mat); template void rotate_alm (Alm > &almT, Alm > &almG, Alm > &almC, const rotmatrix &mat) { double a1, a2, a3; mat.Extract_CPAC_Euler_Angles (a1, a2, a3); rotate_alm (almT, almG, almC, a3, a2, a1); } template void rotate_alm (Alm > &almT, Alm > &almG, Alm > &almC, const rotmatrix &mat); template void rotate_alm (Alm > &almT, Alm > &almG, Alm > &almC, const rotmatrix &mat); healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/calc_powspec_module.cc0000650000175000017530000000507712255154051031206 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2004-2011 Max-Planck-Society * Author: Martin Reinecke */ #include "fitshandle.h" #include "paramfile.h" #include "alm.h" #include "alm_fitsio.h" #include "powspec.h" #include "powspec_fitsio.h" #include "alm_powspec_tools.h" #include "levels_facilities.h" #include "announce.h" using namespace std; int calc_powspec_module (int argc, const char **argv) { module_startup ("calc_powspec",argc,argv); paramfile params (getParamsFromCmdline(argc,argv)); bool pol=params.find("pol",false); string alm1=params.find("alm1"); string ps=params.find("ps"); if (!params.param_present("alm2")) { int lmax,mmax; pol ? get_almsize_pol(alm1,lmax,mmax) : get_almsize (alm1,lmax,mmax); Alm > almT, almG, almC; pol ? read_Alm_from_fits (alm1,almT,almG,almC,lmax,mmax) : read_Alm_from_fits (alm1,almT,lmax,mmax); PowSpec powspec; pol ? extract_powspec (almT,almG,almC,powspec) : extract_powspec (almT,powspec); write_powspec_to_fits (ps,powspec,pol ? 6 : 1); } else { planck_assert(!pol, "polarisation not supported for cross-powerspectra"); int lmax,mmax; get_almsize(alm1,lmax,mmax); Alm > Alm1; read_Alm_from_fits (alm1,Alm1,lmax,mmax); string alm2=params.find("alm2"); get_almsize(alm2,lmax,mmax); Alm > Alm2; read_Alm_from_fits (alm2,Alm2,lmax,mmax); PowSpec powspec; extract_crosspowspec (Alm1,Alm2,powspec); write_powspec_to_fits (ps,powspec,1); } return 0; } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/healpix_tables.h0000650000175000017530000000366512255154051030026 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file healpix_tables.h * Copyright (C) 2011 Max-Planck-Society * \author Martin Reinecke */ #ifndef HEALPIX_TABLES_H #define HEALPIX_TABLES_H #include "datatypes.h" /*! The two possible ordering schemes of a HEALPix map. */ enum Healpix_Ordering_Scheme { RING, /*!< RING scheme */ NEST /*!< NESTED scheme */ }; Healpix_Ordering_Scheme string2HealpixScheme (const std::string &inp); class nside_dummy {}; extern const nside_dummy SET_NSIDE; class Healpix_Tables { protected: static const uint16 ctab[], utab[]; static const int jrll[], jpll[]; static const uint8 peano_subpix[2][8][4], peano_subpath[2][8][4], peano_face2path[2][12], peano_face2face[2][12]; static const int nb_xoffset[], nb_yoffset[], nb_facearray[][12], nb_swaparray[][3]; static const int swap_clen[], swap_cycle[]; }; #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/planck.make0000650000175000017530000000245612255154051026775 0ustar zoncaplanck00000000000000PKG:=Healpix_cxx SD:=$(SRCROOT)/$(PKG) OD:=$(BLDROOT)/$(PKG) FULL_INCLUDE+= -I$(SD) HDR_$(PKG):=$(SD)/*.h LIB_$(PKG):=$(LIBDIR)/libhealpix_cxx.a CXXBIN:=syn_alm_cxx alm2map_cxx anafast_cxx map2tga udgrade_cxx udgrade_harmonic_cxx hotspots_cxx calc_powspec median_filter_cxx hpxtest smoothing_cxx mult_alm rotalm_cxx SPHERE_OBJ:= powspec.o alm.o alm_powspec_tools.o HEALPIX_OBJ:= healpix_tables.o healpix_base.o healpix_map.o alm_healpix_tools.o IO_OBJ:= alm_fitsio.o powspec_fitsio.o healpix_data_io.o healpix_map_fitsio.o MOD_OBJ:= syn_alm_cxx_module.o anafast_cxx_module.o alm2map_cxx_module.o map2tga_module.o udgrade_cxx_module.o udgrade_harmonic_cxx_module.o smoothing_cxx_module.o hotspots_cxx_module.o calc_powspec_module.o median_filter_cxx_module.o mult_alm_module.o LIBOBJ:= $(SPHERE_OBJ) $(HEALPIX_OBJ) $(IO_OBJ) $(MOD_OBJ) ALLOBJ:=$(LIBOBJ) $(CXXBIN:%=%.o) LIBOBJ:=$(LIBOBJ:%=$(OD)/%) ALLOBJ:=$(ALLOBJ:%=$(OD)/%) ODEP:=$(HDR_$(PKG)) $(HDR_cxxsupport) $(HDR_libsharp) $(HDR_libfftpack) $(HDR_c_utils) BDEP:=$(LIB_$(PKG)) $(LIB_cxxsupport) $(LIB_libsharp) $(LIB_libfftpack) $(LIB_c_utils) $(LIB_libcfitsio) $(LIB_$(PKG)): $(LIBOBJ) $(ALLOBJ): $(ODEP) | $(OD)_mkdir CXXBIN:=$(CXXBIN:%=$(BINDIR)/%) $(CXXBIN): $(BINDIR)/% : $(OD)/%.o $(BDEP) all_hdr+=$(HDR_$(PKG)) all_lib+=$(LIB_$(PKG)) all_cxxbin+=$(CXXBIN) healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/udgrade_harmonic_cxx_module.cc0000654000175000017530000001120112264023644032712 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2012-2013 Max-Planck-Society * Author: Martin Reinecke */ #include "paramfile.h" #include "alm.h" #include "xcomplex.h" #include "healpix_data_io.h" #include "healpix_map.h" #include "healpix_map_fitsio.h" #include "alm_healpix_tools.h" #include "levels_facilities.h" #include "announce.h" #include "lsconstants.h" using namespace std; namespace { template void udgrade_harmonic_cxx (paramfile ¶ms) { string infile = params.template find("infile"); string outfile = params.template find("outfile"); int nlmax = params.template find("nlmax"); int nside = params.template find("nside"); int nside_pixwin_in = params.template find("nside_pixwin_in",0); planck_assert (nside_pixwin_in>=0,"nside_pixwin_in must be >= 0"); int nside_pixwin_out = params.template find("nside_pixwin_out",0); planck_assert (nside_pixwin_out>=0,"nside_pixwin_out must be >= 0"); int num_iter = params.template find("iter_order",0); bool polarisation = params.template find("polarisation",false); string datadir; if ((nside_pixwin_in>0) || (nside_pixwin_out>0)) datadir = params.template find("healpix_data"); if (!polarisation) { Healpix_Map map; read_Healpix_map_from_fits(infile,map,1,2); double avg=map.average(); map.Add(T(-avg)); arr weight; get_ring_weights (params,map.Nside(),weight); Alm > alm(nlmax,nlmax); if (map.Scheme()==NEST) map.swap_scheme(); map2alm_iter(map,alm,num_iter,weight); arr temp(nlmax+1); if (nside_pixwin_in>0) { read_pixwin(datadir,nside_pixwin_in,temp); for (int l=0; l<=nlmax; ++l) temp[l] = 1/temp[l]; alm.ScaleL (temp); } if (nside_pixwin_out>0) { read_pixwin(datadir,nside_pixwin_out,temp); alm.ScaleL (temp); } alm(0,0) += T(avg*sqrt(fourpi)); map.SetNside(nside,RING); alm2map (alm,map); write_Healpix_map_to_fits (outfile,map,planckType()); } else { Healpix_Map mapT, mapQ, mapU; read_Healpix_map_from_fits(infile,mapT,mapQ,mapU,2); double avg=mapT.average(); mapT.Add(T(-avg)); arr weight; get_ring_weights (params,mapT.Nside(),weight); Alm > almT(nlmax,nlmax), almG(nlmax,nlmax), almC(nlmax,nlmax); if (mapT.Scheme()==NEST) mapT.swap_scheme(); if (mapQ.Scheme()==NEST) mapQ.swap_scheme(); if (mapU.Scheme()==NEST) mapU.swap_scheme(); map2alm_pol_iter (mapT,mapQ,mapU,almT,almG,almC,num_iter,weight); arr temp(nlmax+1), pol(nlmax+1); if (nside_pixwin_in>0) { read_pixwin(datadir,nside_pixwin_in,temp,pol); for (int l=0; l<=nlmax; ++l) { temp[l] = 1/temp[l]; if (pol[l]!=0.) pol[l] = 1/pol[l]; } almT.ScaleL(temp); almG.ScaleL(pol); almC.ScaleL(pol); } if (nside_pixwin_out>0) { read_pixwin(datadir,nside_pixwin_out,temp,pol); almT.ScaleL(temp); almG.ScaleL(pol); almC.ScaleL(pol); } almT(0,0) += T(avg*sqrt(fourpi)); mapT.SetNside(nside,RING); mapQ.SetNside(nside,RING); mapU.SetNside(nside,RING); alm2map_pol (almT,almG,almC,mapT,mapQ,mapU); write_Healpix_map_to_fits (outfile,mapT,mapQ,mapU,planckType()); } } } // unnamed namespace int udgrade_harmonic_cxx_module (int argc, const char **argv) { module_startup ("udgrade_harmonic_cxx", argc, argv); paramfile params (getParamsFromCmdline(argc,argv)); bool dp = params.find ("double_precision",false); dp ? udgrade_harmonic_cxx(params) : udgrade_harmonic_cxx (params); return 0; } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/healpix_map_fitsio.h0000650000175000017530000001001712255154051030673 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file healpix_map_fitsio.h * Copyright (C) 2003-2011 Max-Planck-Society * \author Martin Reinecke */ #ifndef HEALPIX_MAP_FITSIO_H #define HEALPIX_MAP_FITSIO_H #include #include "datatypes.h" #include "fitshandle.h" #include "healpix_base.h" template class arr; template class Healpix_Map; /*! \defgroup healpix_map_fitsio_group FITS-based I/O of HEALPix maps */ /*! \{ */ /*! Reads the map stored in column \a colnum of the FITS binary table pointed to by \a inp into \a map. */ template void read_Healpix_map_from_fits (fitshandle &inp, Healpix_Map &map, int colnum=1); /*! Opens the FITS file \a filename, jumps to the HDU \a hdunum, and reads the column \a colnum into \a map. */ template void read_Healpix_map_from_fits (const std::string &filename, Healpix_Map &map, int colnum=1, int hdunum=2); template void read_Healpix_map_from_fits (fitshandle &inp, Healpix_Map &mapT, Healpix_Map &mapQ, Healpix_Map &mapU); template void read_Healpix_map_from_fits (const std::string &filename, Healpix_Map &mapT, Healpix_Map &mapQ, Healpix_Map &mapU, int hdunum=2); /*! Inserts a new binary table into \a out, which contains one column of Planck type \a datatype with the name \a name, and writes all HEALPix specific keywords based on the information in \a base. */ void prepare_Healpix_fitsmap (fitshandle &out, const Healpix_Base &base, PDT datatype, const arr &colname); /*! Inserts a new binary table into \a out, which contains one column of Planck type \a datatype, and stores \a map into this column. */ template void write_Healpix_map_to_fits (fitshandle &out, const Healpix_Map &map, PDT datatype); /*! Inserts a new binary table into \a out, which contains three columns of Planck type \a datatype, and stores \a mapT, \a mapQ and \a mapU into these columns. */ template void write_Healpix_map_to_fits (fitshandle &out, const Healpix_Map &mapT, const Healpix_Map &mapQ, const Healpix_Map &mapU, PDT datatype); /*! Creates a new FITS file with the name \a outfile, with a binary table in HDU 2, which contains one column of Planck type \a datatype, and stores \a map into this column. */ template inline void write_Healpix_map_to_fits (const std::string &outfile, const Healpix_Map &map, PDT datatype) { fitshandle out; out.create (outfile); write_Healpix_map_to_fits (out,map,datatype); } /*! Creates a new FITS file with the name \a outfile, with a binary table in HDU 2, which contains three columns of Planck type \a datatype, and stores \a mapT, \a mapQ and \a mapU into this column. */ template inline void write_Healpix_map_to_fits (const std::string &outfile, const Healpix_Map &mapT, const Healpix_Map &mapQ, const Healpix_Map &mapU, PDT datatype) { fitshandle out; out.create (outfile); write_Healpix_map_to_fits (out,mapT,mapQ,mapU,datatype); } /*! \} */ #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/map2tga.cc0000650000175000017530000000027212255154051026522 0ustar zoncaplanck00000000000000#include "levels_facilities.h" #include "error_handling.h" int main (int argc, const char **argv) { PLANCK_DIAGNOSIS_BEGIN map2tga_module (argc, argv); PLANCK_DIAGNOSIS_END } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/alm.cc0000650000175000017530000000275612255154051025751 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file alm.cc * Class for storing spherical harmonic coefficients. * * Copyright (C) 2003-2011 Max-Planck-Society * \author Martin Reinecke */ #include "alm.h" using namespace std; //static tsize Alm_Base::Num_Alms (int l, int m) { planck_assert(m<=l,"mmax must not be larger than lmax"); return ((m+1)*(m+2))/2 + (m+1)*(l-m); } void Alm_Base::swap (Alm_Base &other) { std::swap(lmax, other.lmax); std::swap(mmax, other.mmax); std::swap(tval, other.tval); } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/alm.h0000650000175000017530000001320312255154051025600 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file alm.h * Class for storing spherical harmonic coefficients. * * Copyright (C) 2003-2012 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_ALM_H #define PLANCK_ALM_H #include "arr.h" /*! Base class for calculating the storage layout of spherical harmonic coefficients. */ class Alm_Base { protected: int lmax, mmax, tval; public: /*! Returns the total number of coefficients for maximum quantum numbers \a l and \a m. */ static tsize Num_Alms (int l, int m); /*! Constructs an Alm_Base object with given \a lmax and \a mmax. */ Alm_Base (int lmax_=0, int mmax_=0) : lmax(lmax_), mmax(mmax_), tval(2*lmax+1) {} /*! Changes the object's maximum quantum numbers to \a lmax and \a mmax. */ void Set (int lmax_, int mmax_) { lmax=lmax_; mmax=mmax_; tval=2*lmax+1; } /*! Returns the maximum \a l */ int Lmax() const { return lmax; } /*! Returns the maximum \a m */ int Mmax() const { return mmax; } /*! Returns an array index for a given m, from which the index of a_lm can be obtained by adding l. */ int index_l0 (int m) const { return ((m*(tval-m))>>1); } /*! Returns the array index of the specified coefficient. */ int index (int l, int m) const { return index_l0(m) + l; } /*! Returns \a true, if both objects have the same \a lmax and \a mmax, else \a false. */ bool conformable (const Alm_Base &other) const { return ((lmax==other.lmax) && (mmax==other.mmax)); } /*! Swaps the contents of two Alm_Base objects. */ void swap (Alm_Base &other); }; /*! Class for storing spherical harmonic coefficients. */ template class Alm: public Alm_Base { private: arr alm; public: /*! Constructs an Alm object with given \a lmax and \a mmax. */ Alm (int lmax_=0, int mmax_=0) : Alm_Base(lmax_,mmax_), alm (Num_Alms(lmax,mmax)) {} /*! Deletes the old coefficients and allocates storage according to \a lmax and \a mmax. */ void Set (int lmax_, int mmax_) { Alm_Base::Set(lmax_, mmax_); alm.alloc(Num_Alms(lmax,mmax)); } /*! Deallocates the old coefficients and uses the content of \a data for storage. \a data is deallocated during the call. */ void Set (arr &data, int lmax_, int mmax_) { planck_assert (Num_Alms(lmax_,mmax_)==data.size(),"wrong array size"); Alm_Base::Set(lmax_, mmax_); alm.transfer(data); } /*! Sets all coefficients to zero. */ void SetToZero () { alm.fill (0); } /*! Multiplies all coefficients by \a factor. */ template void Scale (const T2 &factor) { for (tsize m=0; m void ScaleL (const arr &factor) { planck_assert(factor.size()>tsize(lmax), "alm.ScaleL: factor array too short"); for (int m=0; m<=mmax; ++m) for (int l=m; l<=lmax; ++l) operator()(l,m)*=factor[l]; } /*! \a a(l,m) *= \a factor[m] for all \a l,m. */ template void ScaleM (const arr &factor) { planck_assert(factor.size()>tsize(mmax), "alm.ScaleM: factor array too short"); for (int m=0; m<=mmax; ++m) for (int l=m; l<=lmax; ++l) operator()(l,m)*=factor[m]; } /*! Adds \a num to a_00. */ template void Add (const T2 &num) { alm[0]+=num; } /*! Returns a reference to the specified coefficient. */ T &operator() (int l, int m) { return alm[index(l,m)]; } /*! Returns a constant reference to the specified coefficient. */ const T &operator() (int l, int m) const { return alm[index(l,m)]; } /*! Returns a pointer for a given m, from which the address of a_lm can be obtained by adding l. */ T *mstart (int m) { return &alm[index_l0(m)]; } /*! Returns a pointer for a given m, from which the address of a_lm can be obtained by adding l. */ const T *mstart (int m) const { return &alm[index_l0(m)]; } /*! Returns a constant reference to the a_lm data. */ const arr &Alms () const { return alm; } /*! Swaps the contents of two Alm objects. */ void swap (Alm &other) { Alm_Base::swap(other); alm.swap(other.alm); } /*! Adds all coefficients from \a other to the own coefficients. */ void Add (const Alm &other) { planck_assert (conformable(other), "A_lm are not conformable"); for (tsize m=0; m #include "alm_fitsio.h" #include "alm.h" #include "fitshandle.h" #include "xcomplex.h" #include "safe_cast.h" #include "share_utils.h" using namespace std; void get_almsize(fitshandle &inp, int &lmax, int &mmax) { if (inp.key_present("MAX-LPOL") && inp.key_present("MAX-MPOL")) { inp.get_key ("MAX-LPOL",lmax); inp.get_key ("MAX-MPOL",mmax); return; } int n_alms = safe_cast(inp.nelems(1)); arr index; lmax=mmax=-1; chunkMaker cm(n_alms,inp.efficientChunkSize(1)); uint64 offset,ppix; while(cm.getNext(offset,ppix)) { index.alloc(ppix); inp.read_column(1,index,offset); for (tsize i=0; ilmax) lmax=l; if (m>mmax) mmax=m; } } } void get_almsize(const string &filename, int &lmax, int &mmax, int hdunum) { fitshandle inp; inp.open (filename); inp.goto_hdu(hdunum); get_almsize (inp, lmax, mmax); } void get_almsize_pol(const string &filename, int &lmax, int &mmax) { int tlmax, tmmax; fitshandle inp; inp.open (filename); lmax=mmax=0; for (int hdu=2; hdu<=4; ++hdu) { inp.goto_hdu(hdu); get_almsize (inp,tlmax,tmmax); if (tlmax>lmax) lmax=tlmax; if (tmmax>mmax) mmax=tmmax; } } template void read_Alm_from_fits (fitshandle &inp, Alm >&alms, int lmax, int mmax) { int n_alms = safe_cast(inp.nelems(1)); arr index; arr re, im; alms.Set(lmax, mmax); alms.SetToZero(); int max_index = lmax*lmax + lmax + mmax + 1; chunkMaker cm(n_alms,inp.efficientChunkSize(1)); uint64 offset,ppix; while(cm.getNext(offset,ppix)) { index.alloc(ppix); re.alloc(ppix); im.alloc(ppix); inp.read_column(1,index,offset); inp.read_column(2,re,offset); inp.read_column(3,im,offset); for (tsize i=0; imax_index) continue; int l = isqrt(index[i]-1); int m = index[i] - l*l - l - 1; planck_assert(m>=0,"negative m encountered"); planck_assert(l>=m, "wrong l,m combination"); if ((l<=lmax) && (m<=mmax)) alms(l,m).Set (re[i], im[i]); } } } template void read_Alm_from_fits (fitshandle &inp, Alm > &alms, int lmax, int mmax); template void read_Alm_from_fits (fitshandle &inp, Alm > &alms, int lmax, int mmax); template void read_Alm_from_fits (const string &filename, Alm >&alms, int lmax, int mmax, int hdunum) { fitshandle inp; inp.open (filename); inp.goto_hdu(hdunum); read_Alm_from_fits(inp,alms,lmax,mmax); } template void read_Alm_from_fits (const string &filename, Alm > &alms, int lmax, int mmax, int hdunum); template void read_Alm_from_fits (const string &filename, Alm > &alms, int lmax, int mmax, int hdunum); template void write_Alm_to_fits (fitshandle &out, const Alm > &alms, int lmax, int mmax, PDT datatype) { vector cols; cols.push_back (fitscolumn("index","l*l+l+m+1",1,PLANCK_INT32)); cols.push_back (fitscolumn("real","unknown",1,datatype)); cols.push_back (fitscolumn("imag","unknown",1,datatype)); out.insert_bintab(cols); arr index; arr re, im; int lm=alms.Lmax(), mm=alms.Mmax(); int n_alms = ((mmax+1)*(mmax+2))/2 + (mmax+1)*(lmax-mmax); int l=0, m=0; chunkMaker cm(n_alms,out.efficientChunkSize(1)); uint64 offset,ppix; while(cm.getNext(offset,ppix)) { index.alloc(ppix); re.alloc(ppix); im.alloc(ppix); for (tsize i=0; il) || (m>mmax)) { ++l; m=0; } } out.write_column(1,index,offset); out.write_column(2,re,offset); out.write_column(3,im,offset); } out.set_key("MAX-LPOL",lmax,"highest l in the table"); out.set_key("MAX-MPOL",mmax,"highest m in the table"); } template void write_Alm_to_fits (fitshandle &out, const Alm > &alms, int lmax, int mmax, PDT datatype); template void write_Alm_to_fits (fitshandle &out, const Alm > &alms, int lmax, int mmax, PDT datatype); template void write_compressed_Alm_to_fits (fitshandle &out, const Alm > &alms, int lmax, int mmax, PDT datatype) { vector cols; cols.push_back (fitscolumn("index","l*l+l+m+1",1,PLANCK_INT32)); cols.push_back (fitscolumn("real","unknown",1,datatype)); cols.push_back (fitscolumn("imag","unknown",1,datatype)); out.insert_bintab(cols); arr index; arr re, im; int n_alms = 0; for (int m=0; m<=mmax; ++m) for (int l=m; l<=lmax; ++l) if (alms(l,m).norm()>0) ++n_alms; int l=0, m=0; int real_lmax=0, real_mmax=0; chunkMaker cm(n_alms,out.efficientChunkSize(1)); uint64 offset,ppix; while(cm.getNext(offset,ppix)) { index.alloc(ppix); re.alloc(ppix); im.alloc(ppix); for (tsize i=0; il) || (m>mmax)) { ++l; m=0; } } index[i] = l*l + l + m + 1; re[i] = alms(l,m).re; im[i] = alms(l,m).im; if (l>real_lmax) real_lmax=l; if (m>real_mmax) real_mmax=m; ++m; if ((m>l) || (m>mmax)) { ++l; m=0; } } out.write_column(1,index,offset); out.write_column(2,re,offset); out.write_column(3,im,offset); } out.set_key("MAX-LPOL",real_lmax,"highest l in the table"); out.set_key("MAX-MPOL",real_mmax,"highest m in the table"); } template void write_compressed_Alm_to_fits (fitshandle &out, const Alm > &alms, int lmax, int mmax, PDT datatype); template void write_compressed_Alm_to_fits (fitshandle &out, const Alm > &alms, int lmax, int mmax, PDT datatype); healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/powspec.h0000650000175000017530000001073312255154051026514 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2003-2011 Max-Planck-Society * Author: Martin Reinecke */ #ifndef POWSPEC_H #define POWSPEC_H #include "arr.h" /*! Class for storing unpolarised and polarised power spectra. */ class PowSpec { private: arr tt_, gg_, cc_, tg_, tc_, gc_; int num_specs; void dealloc(); public: /*! */ PowSpec() {} /*! Constructs a \a PowSpec with \a nspec components and a maximum multipole of \a lmax. \a nspec can be 1 (TT), 4 (TT,GG,CC,TG) or 6 (TT,GG,CC,TG,TC,GC). */ PowSpec(int nspec, int lmax); ~PowSpec(); /*! Ensures that the internal array sizes are consistent with the \a num_specs variable. */ void assertArraySizes() const; /*! Checks whether the object can be an auto power spectrum. If this is not the case, an exception is thrown. */ bool consistentAutoPowspec() const; /*! Returns the number of spectral components. */ int Num_specs() const { return num_specs; } /*! Returns the maximum \a l. */ int Lmax() const { return tt_.size()-1; } /*! Returns the TT array (read-only). */ const arr &tt() const { return tt_; } /*! Returns the GG array (read-only). */ const arr &gg() const { return gg_; } /*! Returns the CC array (read-only). */ const arr &cc() const { return cc_; } /*! Returns the TG array (read-only). */ const arr &tg() const { return tg_; } /*! Returns the TC array (read-only). */ const arr &tc() const { return tc_; } /*! Returns the GC array (read-only). */ const arr &gc() const { return gc_; } /*! Returns TT(l) (read-write). */ double &tt (int l) { return tt_[l]; } /*! Returns GG(l) (read-write). */ double &gg (int l) { return gg_[l]; } /*! Returns CC(l) (read-write). */ double &cc (int l) { return cc_[l]; } /*! Returns TG(l) (read-write). */ double &tg (int l) { return tg_[l]; } /*! Returns TC(l) (read-write). */ double &tc (int l) { return tc_[l]; } /*! Returns GC(l) (read-write). */ double &gc (int l) { return gc_[l]; } /*! Returns TT(l) (read-only). */ const double &tt (int l) const { return tt_[l]; } /*! Returns GG(l) (read-only). */ const double &gg (int l) const { return gg_[l]; } /*! Returns CC(l) (read-only). */ const double &cc (int l) const { return cc_[l]; } /*! Returns TG(l) (read-only). */ const double &tg (int l) const { return tg_[l]; } /*! Returns TC(l) (read-only). */ const double &tc (int l) const { return tc_[l]; } /*! Returns GC(l) (read-only). */ const double &gc (int l) const { return gc_[l]; } /*! Re-allocates the object */ void Set(int nspec, int lmax); /*! Sets the whole TT array. \note On exit, \a tt_new is zero-sized! */ void Set(arr &tt_new); /*! Sets the four first components. \note On exit, all arguments are zero-sized! */ void Set(arr &tt_new, arr &gg_new, arr &cc_new, arr &tg_new); /*! Sets all components. \note On exit, all arguments are zero-sized! */ void Set(arr &tt_new, arr &gg_new, arr &cc_new, arr &tg_new, arr &tc_new, arr &gc_new); /*! Smooths the spectrum with a Gaussian beam. \a fwhm is given in radian. \note This is only implememted for 1 and 4 spectra so far. */ void smoothWithGauss (double fwhm); }; #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/map2tga.par.txt0000650000175000017530000000377412255154051027547 0ustar zoncaplanck00000000000000Usage: map2tga or: map2tga [-sig ] [-pal ] [-xsz ] [-bar] [-log] [-asinh] [-lon ] [-lat ] [-mul ] [-add ] [-min ] [-max ] [-res ] [-title ] [-flippal] [-gnomonic] [-interpol] [-equalize] [-viewer ] Parameters read by map2tga: infile (string): input file containing the Healpix map outfile (string): output TGA file sig (integer, default=1): column number of the requested Healpix map pal (integer, default=4): number of the color palette flippal (bool, default=false): whether the palette should be flipped xsz (integer, default=1024): number of image pixels in x direction bar (logical, default=false): whether a color bar should be added to the image log (logical, default=false): whether the logarithm of the map values should be displayed equalize (logical, default=false): whether histogram equalisation should be performed asinh (logical, default=false): whether the hyperbolic arcsine of the map values should be displayed lon (double, default=0): the longitude (in degrees) of the image center lat (double, default=0): the latitude (in degrees) of the image center mul (double, default=1): scale factor applied to the data add (double, default=0): offset added to the data (before multiplication) min (double, optional): if specified, this value is used as minimum of the color scale max (double, optional): if specified, this value is used as maximum of the color scale res (double, default=1): only for gnomonic projection: the size (in arcmin) of an image pixel title (string, optional): if specified, this value is used as the image title viewer (string, optional): if specified, this executable is used to show the resulting image pro (string, default="mollw"): if this is equal to "gno", gnomonic projection is used, else Mollweide interpol (bool, default=false): false: no interpolation true : bilinear interpolation healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/alm_healpix_tools.h0000650000175000017530000001720112310173024030525 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file alm_healpix_tools.h * Copyright (C) 2003-2011 Max-Planck-Society * \author Martin Reinecke */ #ifndef HEALPIX_ALM_HEALPIX_TOOLS_H #define HEALPIX_ALM_HEALPIX_TOOLS_H #include "xcomplex.h" #include "arr.h" template class Alm; template class Healpix_Map; /*! \defgroup alm_healpix_group Conversions between a_lm and HEALPix maps */ /*! \{ */ /*! Converts a Healpix map to a set of a_lms. \param map the input map, which must have RING ordering \param alm the output a_lms. l_max and m_max of the conversion are determined from this object. \param weight array containing the weights for the individual rings of the map. It must have at least 2*\a map.Nside() entries. \param add_alm If this is \a true, then the computed a_lm are added to the values already residing in \a alm. */ template void map2alm (const Healpix_Map &map, Alm > &alm, const arr &weight, bool add_alm=false); /*! Converts a Healpix map to a set of a_lms, using an iterative scheme which is more accurate than plain map2alm(). \param map the input map, which must have RING ordering. \param alm the output a_lms. l_max and m_max of the conversion are determined from this object. \param num_iter the number of iterations (0 is identical to map2alm()). \param weight array containing the weights for the individual rings of the map. It must have at least 2*\a map.Nside() entries. */ template void map2alm_iter (const Healpix_Map &map, Alm > &alm, int num_iter, const arr &weight); template inline void map2alm_iter (const Healpix_Map &map, Alm > &alm, int num_iter) { arr wgt(2*map.Nside(),1.); map2alm_iter(map,alm,num_iter,wgt); } template void map2alm_iter2 (const Healpix_Map &map, Alm > &alm, double err_abs, double err_rel); template void map2alm_spin (const Healpix_Map &map1, const Healpix_Map &map2, Alm > &alm1, Alm > &alm2, int spin, const arr &weight, bool add_alm); template void map2alm_spin_iter2 (const Healpix_Map &map1, const Healpix_Map &map2, Alm > &alm1, Alm > &alm2, int spin, double err_abs, double err_rel); /*! Converts Healpix maps containing the I, Q and U Stokes parameters to sets of a_lms. \param mapT the I-Stokes parameter input map \param mapQ the Q-Stokes parameter input map \param mapU the U-Stokes parameter input map \note All maps must have the same nside, and must be in RING scheme. \param almT the output temperature a_lms \param almG the output gradient a_lms \param almC the output curl a_lms \note all a_lm sets must have the the same lmax and mmax. \param weight ring weights for the maps. \param add_alm If this is \a true, then the computed a_lm are added to the values already residing in \a alm. \note The weight array must have at least 2*\a mapT.Nside() entries. */ template void map2alm_pol (const Healpix_Map &mapT, const Healpix_Map &mapQ, const Healpix_Map &mapU, Alm > &almT, Alm > &almG, Alm > &almC, const arr &weight, bool add_alm=false); /*! Converts Healpix maps containing the I, Q and U Stokes parameters to sets of a_lms, using an iterative scheme which is more accurate than plain map2alm_pol(). \param mapT the I-Stokes parameter input map \param mapQ the Q-Stokes parameter input map \param mapU the U-Stokes parameter input map \note All maps must have the same nside, and must be in RING scheme. \param almT the output temperature a_lms \param almG the output gradient a_lms \param almC the output curl a_lms \note all a_lm sets must have the the same lmax and mmax. \param num_iter the number of iterations (0 is identical to map2alm_pol()). \param weight ring weights for the maps. \note The weight array must have at least 2*\a mapT.Nside() entries. */ template void map2alm_pol_iter (const Healpix_Map &mapT, const Healpix_Map &mapQ, const Healpix_Map &mapU, Alm > &almT, Alm > &almG, Alm > &almC, int num_iter, const arr &weight); template inline void map2alm_pol_iter (const Healpix_Map &mapT, const Healpix_Map &mapQ, const Healpix_Map &mapU, Alm > &almT, Alm > &almG, Alm > &almC, int num_iter) { arr wgt(2*mapT.Nside(),1.); map2alm_pol_iter(mapT,mapQ,mapU,almT,almG,almC,num_iter,wgt); } template void map2alm_pol_iter2 (const Healpix_Map &mapT, const Healpix_Map &mapQ, const Healpix_Map &mapU, Alm > &almT, Alm > &almG, Alm > &almC, double err_abs, double err_rel); /*! Converts a a set of a_lm to a HEALPix map. \param alm the input a_lms. l_max and m_max of the conversion are determined from this object. \param map the output map, which must have RING ordering. */ template void alm2map (const Alm > &alm, Healpix_Map &map); template void alm2map_spin (const Alm > &alm1, const Alm > &alm2, Healpix_Map &map1, Healpix_Map &map2, int spin); /*! Converts a a set of polarised a_lm to a HEALPix map. \param almT the input temperature a_lms \param almG the input gradient a_lms \param almC the input curl a_lms \param mapT the I-Stokes parameter output map \param mapQ the Q-Stokes parameter output map \param mapU the U-Stokes parameter output map */ template void alm2map_pol (const Alm > &almT, const Alm > &almG, const Alm > &almC, Healpix_Map &mapT, Healpix_Map &mapQ, Healpix_Map &mapU); /*! Converts a a set of a_lm to a HEALPix map and its first derivatives. \param alm the input a_lms. l_max and m_max of the conversion are determined from this object. \param map the output map, which must have RING ordering. \param mapdth an output map containing \f$d (\mbox{map})/d\vartheta\f$, which must have RING ordering. \param mapdph an output map containing \f$(\sin\vartheta)^{-1}d(\mbox{map})/d\varphi\f$, which must have RING ordering. */ template void alm2map_der1 (const Alm > &alm, Healpix_Map &map, Healpix_Map &mapdth, Healpix_Map &mapdph); /*! \} */ #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/healpix_data_io.cc0000650000175000017530000000625712255154051030312 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2003, 2005, 2009 Max-Planck-Society * Author: Martin Reinecke */ #include "healpix_data_io.h" #include "arr.h" #include "fitshandle.h" #include "paramfile.h" #include "string_utils.h" using namespace std; void read_weight_ring (const string &dir, int nside, arr &weight) { fitshandle inp; inp.open(dir+"/weight_ring_n"+intToString(nside,5)+".fits"); inp.goto_hdu(2); weight.alloc (2*nside); inp.read_column(1,weight); } void get_ring_weights (paramfile ¶ms, int nside, arr &weight) { bool weighted = params.find("weighted",false); weight.alloc (2*nside); if (weighted) { string datadir = params.find("healpix_data"); read_weight_ring (datadir, nside, weight); for (tsize m=0; m &temp) { fitshandle inp; inp.open(dir+"/pixel_window_n"+intToString(nside,4)+".fits"); inp.goto_hdu(2); if (temp.size()==0) inp.read_entire_column(1,temp); else inp.read_column(1,temp); } void read_pixwin (const string &dir, int nside, arr &temp, arr &pol) { fitshandle inp; inp.open(dir+"/pixel_window_n"+intToString(nside,4)+".fits"); inp.goto_hdu(2); if (temp.size()==0) inp.read_entire_column(1,temp); else inp.read_column(1,temp); if (pol.size()==0) inp.read_entire_column(2,pol); else inp.read_column(2,pol); } void get_pixwin (paramfile ¶ms, int lmax, int nside, arr &pixwin) { bool do_pixwin = params.find("pixel_window",false); pixwin.alloc(lmax+1); pixwin.fill(1); if (do_pixwin) { string datadir = params.find("healpix_data"); read_pixwin (datadir,nside,pixwin); } } void get_pixwin (paramfile ¶ms, int lmax, int nside, arr &pixwin, arr &pixwin_pol) { bool do_pixwin = params.find("pixel_window",false); pixwin.alloc(lmax+1); pixwin.fill(1); pixwin_pol.alloc(lmax+1); pixwin_pol.fill(1); if (do_pixwin) { string datadir = params.find("healpix_data"); read_pixwin (datadir,nside,pixwin,pixwin_pol); } } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/calc_powspec.cc0000650000175000017530000000027712255154051027636 0ustar zoncaplanck00000000000000#include "levels_facilities.h" #include "error_handling.h" int main (int argc, const char **argv) { PLANCK_DIAGNOSIS_BEGIN calc_powspec_module (argc, argv); PLANCK_DIAGNOSIS_END } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/alm2map_cxx_module.cc0000650000175000017530000000764112255154051030756 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2003-2010 Max-Planck-Society * Author: Martin Reinecke */ #include "xcomplex.h" #include "paramfile.h" #include "healpix_data_io.h" #include "alm.h" #include "alm_fitsio.h" #include "healpix_map.h" #include "healpix_map_fitsio.h" #include "alm_healpix_tools.h" #include "alm_powspec_tools.h" #include "fitshandle.h" #include "levels_facilities.h" #include "lsconstants.h" #include "announce.h" using namespace std; namespace { template void alm2map_cxx (paramfile ¶ms) { int nlmax = params.template find("nlmax"); int nmmax = params.template find("nmmax",nlmax); planck_assert(nmmax<=nlmax,"nmmax must not be larger than nlmax"); string infile = params.template find("infile"); string outfile = params.template find("outfile"); int nside = params.template find("nside"); double fwhm = arcmin2rad*params.template find("fwhm_arcmin",0); arr temp, pol; get_pixwin (params,nlmax,nside,temp,pol); bool deriv = params.template find("derivatives",false); if (deriv) { Alm > alm; read_Alm_from_fits(infile,alm,nlmax,nmmax,2); if (fwhm>0) smoothWithGauss (alm, fwhm); Healpix_Map map(nside,RING,SET_NSIDE), mapdth(nside,RING,SET_NSIDE), mapdph(nside,RING,SET_NSIDE); alm.ScaleL(temp); double offset = alm(0,0).real()/sqrt(fourpi); alm(0,0) = 0; alm2map_der1(alm,map,mapdth,mapdph); map.Add(T(offset)); write_Healpix_map_to_fits (outfile,map,mapdth,mapdph,planckType()); return; } bool polarisation = params.template find("polarisation"); if (!polarisation) { Alm > alm; read_Alm_from_fits(infile,alm,nlmax,nmmax,2); if (fwhm>0) smoothWithGauss (alm, fwhm); Healpix_Map map(nside,RING,SET_NSIDE); alm.ScaleL(temp); double offset = alm(0,0).real()/sqrt(fourpi); alm(0,0) = 0; alm2map(alm,map); map.Add(T(offset)); write_Healpix_map_to_fits (outfile,map,planckType()); } else { Alm > almT, almG, almC; read_Alm_from_fits(infile,almT,almG,almC,nlmax,nmmax,2); if (fwhm>0) smoothWithGauss (almT, almG, almC, fwhm); Healpix_Map mapT(nside,RING,SET_NSIDE), mapQ(nside,RING,SET_NSIDE), mapU(nside,RING,SET_NSIDE); almT.ScaleL(temp); almG.ScaleL(pol); almC.ScaleL(pol); double offset = almT(0,0).real()/sqrt(fourpi); almT(0,0) = 0; alm2map_pol(almT,almG,almC,mapT,mapQ,mapU); mapT.Add(T(offset)); write_Healpix_map_to_fits (outfile,mapT,mapQ,mapU,planckType()); } } } // unnamed namespace int alm2map_cxx_module (int argc, const char **argv) { module_startup ("alm2map_cxx", argc, argv); paramfile params (getParamsFromCmdline(argc,argv)); bool dp = params.find ("double_precision",false); dp ? alm2map_cxx(params) : alm2map_cxx(params); return 0; } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/syn_alm_cxx.par.txt0000650000175000017530000000126212255154051030526 0ustar zoncaplanck00000000000000Parameters read by syn_alm_cxx: nlmax (integer): maximum order of l nmmax (integer): maximum order of m (must not be larger than nlmax, default=nlmax) infile (string): input file containing the CMB power spectrum outfile (string): output file name for the calculated a_lm rand_seed (integer): random-number seed fwhm_arcmin (real): FWHM (in arcmin) of a Gaussian beam, which is used to smooth the resulting sky a_lm (default=0) polarisation (bool): if false, only the intensity a_lm are generated, if true, T, G and C a_lm are generated double_precision (bool, default=false): if false, the a_lm are created in single precision, otherwise in double precision. healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/smoothing_cxx.par.txt0000650000175000017530000000161712255154051031077 0ustar zoncaplanck00000000000000Parameters read by smoothing_cxx: fwhm_arcmin (double): FWHM (in arcmin) of the Gaussian beam used for smoothing. If the value is negative, the smoothing of a Gaussian beam with an FWHM of -fwhm_arcmin will be _removed_ from the input map. nlmax (integer): maximum order of l infile (string): input file containing the Healpix map outfile (string, default=""): output file for the smoothed Healpix map polarisation (bool): if false, only an intensity map is smoothed if true, an IQU map is smoothed weighted (bool, default=false): if true, weighted quadrature is used if (weighted) healpix_data (string): directory containing the Healpix data files endif iter_order (integer, default=0) number of iterations for the analysis (0: standard analysis) double_precision (bool, default=false): if false, a_lm are read/written in single precision, otherwise in double precision. healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/mult_alm.cc0000650000175000017530000000027312255154051027002 0ustar zoncaplanck00000000000000#include "levels_facilities.h" #include "error_handling.h" int main (int argc, const char **argv) { PLANCK_DIAGNOSIS_BEGIN mult_alm_module (argc, argv); PLANCK_DIAGNOSIS_END } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/anafast_cxx.par.txt0000654000175000017530000000244212264023644030511 0ustar zoncaplanck00000000000000Parameters read by anafast_cxx: nlmax (integer): maximum order of l nmmax (integer): maximum order of m (must not be larger than nlmax, default=nlmax) infile (string): input file containing the Healpix map outfile (string, default=""): output file name for power spectrum; if empty, no spectrum is written outfile_alms (string, default=""): output file name for the a_lm; if empty, no a_lm are written polarisation (bool): if false, only the intensity a_lm are generated, if true, a_lm for T, G and C component are generated weighted (bool, default=false): if true, weighted quadrature is used if (weighted) healpix_data (string): directory containing the Healpix data files endif iter_order (integer, default=0) number of iterations for the analysis (0: standard analysis) double_precision (bool, default=false): if false, maps and a_lm are read/written in single precision, otherwise in double precision. if (polarisation==true && outfile!="") full_powerspectrum (bool, default=false): if true, write a 6-column power spectrum; if false, write a 4-column power spectrum. endif remove_monopole (bool, default=false): if true, subtract the average pixel value from the temperature map, and add the corresponding value to almT(0,0) after the map2alm transform. healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/healpix_tables.cc0000650000175000017530000001137612255154051030162 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2011 Max-Planck-Society * Author: Martin Reinecke */ #include "healpix_tables.h" #include "string_utils.h" using namespace std; const nside_dummy SET_NSIDE=nside_dummy(); Healpix_Ordering_Scheme string2HealpixScheme (const string &inp) { string tmp=trim(inp); if (equal_nocase(tmp,"RING")) return RING; if (equal_nocase(tmp,"NESTED")) return NEST; planck_fail ("bad Healpix ordering scheme '"+tmp+ "': expected 'RING' or 'NESTED'"); } const uint16 Healpix_Tables::utab[] = { #define Z(a) 0x##a##0, 0x##a##1, 0x##a##4, 0x##a##5 #define Y(a) Z(a##0), Z(a##1), Z(a##4), Z(a##5) #define X(a) Y(a##0), Y(a##1), Y(a##4), Y(a##5) X(0),X(1),X(4),X(5) #undef X #undef Y #undef Z }; const uint16 Healpix_Tables::ctab[] = { #define Z(a) a,a+1,a+256,a+257 #define Y(a) Z(a),Z(a+2),Z(a+512),Z(a+514) #define X(a) Y(a),Y(a+4),Y(a+1024),Y(a+1028) X(0),X(8),X(2048),X(2056) #undef X #undef Y #undef Z }; const int Healpix_Tables::jrll[] = { 2,2,2,2,3,3,3,3,4,4,4,4 }, Healpix_Tables::jpll[] = { 1,3,5,7,0,2,4,6,1,3,5,7 }; const uint8 Healpix_Tables::peano_subpix[2][8][4] = { { {0,1,3,2}, {3,0,2,1}, {2,3,1,0}, {1,2,0,3}, {0,3,1,2}, {1,0,2,3}, {2,1,3,0}, {3,2,0,1} }, { {0,1,3,2}, {1,3,2,0}, {3,2,0,1}, {2,0,1,3}, {0,2,3,1}, {1,0,2,3}, {3,1,0,2}, {2,3,1,0} } }; const uint8 Healpix_Tables::peano_subpath[2][8][4] = { { {4,0,6,0}, {7,5,1,1}, {2,4,2,6}, {3,3,7,5}, {0,2,4,4}, {5,1,5,3}, {6,6,0,2}, {1,7,3,7} }, { {4,0,0,6}, {5,1,1,7}, {6,2,2,4}, {7,3,3,5}, {0,4,4,2}, {1,5,5,3}, {2,6,6,0}, {3,7,7,1} } }; const uint8 Healpix_Tables::peano_face2path[2][12] = { { 2,5,2,5,3,6,3,6,2,3,2,3 }, { 2,6,2,3,3,5,2,6,2,3,3,5 } }; const uint8 Healpix_Tables::peano_face2face[2][12] = { { 0,5,6,11,10,1,4,7,2,3,8,9 }, { 0,5,8,9,6,1,2,7,10,11,4,3 } }; const int Healpix_Tables::nb_xoffset[] = { -1,-1, 0, 1, 1, 1, 0,-1 }, Healpix_Tables::nb_yoffset[] = { 0, 1, 1, 1, 0,-1,-1,-1 }; const int Healpix_Tables::nb_facearray[][12] = { { 8, 9,10,11,-1,-1,-1,-1,10,11, 8, 9 }, // S { 5, 6, 7, 4, 8, 9,10,11, 9,10,11, 8 }, // SE { -1,-1,-1,-1, 5, 6, 7, 4,-1,-1,-1,-1 }, // E { 4, 5, 6, 7,11, 8, 9,10,11, 8, 9,10 }, // SW { 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,10,11 }, // center { 1, 2, 3, 0, 0, 1, 2, 3, 5, 6, 7, 4 }, // NE { -1,-1,-1,-1, 7, 4, 5, 6,-1,-1,-1,-1 }, // W { 3, 0, 1, 2, 3, 0, 1, 2, 4, 5, 6, 7 }, // NW { 2, 3, 0, 1,-1,-1,-1,-1, 0, 1, 2, 3 } }; // N const int Healpix_Tables::nb_swaparray[][3] = { { 0,0,3 }, // S { 0,0,6 }, // SE { 0,0,0 }, // E { 0,0,5 }, // SW { 0,0,0 }, // center { 5,0,0 }, // NE { 0,0,0 }, // W { 6,0,0 }, // NW { 3,0,0 } }; // N const int Healpix_Tables::swap_clen[] = { 0,7,5,4,12,10,13,18,14,19,18,17,27,21 }; const int Healpix_Tables::swap_cycle[] = { 0,1,8,12,16,21,40, 0,1,2,40,114, 0,4,160,263, 0,4,30,49,51,87,526,1027,1105,1387,1807,2637, 0,8,10,18,39,74,146,307,452,4737, 0,1,2,7,9,17,80,410,1526,1921,32859,33566,38931, 0,5,6,10,12,24,27,95,372,494,924,1409,3492,4248,9137,66043,103369,156899, 0,1,2,3,4,45,125,351,697,24337,102940,266194,341855,419857, 0,1,2,3,9,16,1705,2082,2126,8177,12753,15410,52642,80493,83235,88387,99444, 1675361,2495125, 0,2,6,8,9,11,20,50,93,152,183,2137,13671,44794,486954,741908,4803258, 5692573, 0,1,5,6,44,53,470,2847,3433,4906,13654,14710,400447,1797382,2744492, 18775974,23541521, 0,4,9,10,16,33,83,117,318,451,5759,10015,128975,171834,211256,347608, 1278690,2154097,2590798,3427694,5581717,21012301,27023976,72522811, 95032729,139166747,171822389, 0,5,10,267,344,363,2968,3159,9083,18437,76602,147614,1246902,1593138, 2035574,6529391,9511830,11340287,29565945,281666026,677946848 }; healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/hpxtest.cc0000650000175000017530000007456112255154051026702 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2004-2013 Max-Planck-Society * Author: Martin Reinecke */ /* Candidates for testing the validity of the Healpix routines: - done: ang2pix(pix2ang(i)) = i for all Healpix_Bases - done: pix2ang(ang2pix(ptg)) dot ptg > 1-delta for all Healpix_Bases - done: ring2nest(nest2ring(i)) = i for all hierarchical Healpix_Bases - done: downgrade(upgrade(map)) = map for all maps - done: map and downgraded map should have same average - done: alm2map(map2alm(map)) approx map (same for pol) - partly done: neighbor tests - powspec -> alm -> powspec (should produce similar powspecs, also for pol) - done: two swap_schemes() should produce original map - done: query_disc tests (dot products etc.) - a_lms: test Set(), Scale(), Add(), alm(l,m) = alm.mstart(m)[l], etc. */ #include #include "healpix_base.h" #include "healpix_map.h" #include "arr.h" #include "planck_rng.h" #include "lsconstants.h" #include "alm.h" #include "alm_healpix_tools.h" #include "alm_powspec_tools.h" #include "geom_utils.h" #include "walltimer.h" #include "announce.h" using namespace std; const int nsamples = 1000000; planck_rng rng; namespace { void random_dir (pointing &ptg) { ptg.theta = acos(rng.rand_uni()*2-1); ptg.phi = rng.rand_uni()*twopi; } void random_zphi (double &z, double &phi) { z = rng.rand_uni()*2-1; phi = rng.rand_uni()*twopi; } template string bname() { return string("(basetype: ")+type2typename()+")"; } template void check_ringnestring() { cout << "testing ring2nest(nest2ring(m))==m " << bname() << endl; for (int order=0; order<=T_Healpix_Base::order_max; ++order) { T_Healpix_Base base (order,RING); for (int m=0; m() << endl; for (int order=0; order<=T_Healpix_Base::order_max; ++order) { T_Healpix_Base base (order,NEST); for (int m=0; m() << endl; int omax=T_Healpix_Base::order_max; for (int order=0; order<=omax; ++order) { T_Healpix_Base base1 (order,RING), base2 (order,NEST); for (int m=0; m() << endl; int omax=T_Healpix_Base::order_max; for (int order=0; order<=omax; ++order) { T_Healpix_Base base1 (order,NEST), base2 (order,RING); double mincos = min (cos(base1.max_pixrad()),0.999999999999999); for (int m=0; m base (nside,RING,SET_NSIDE); double mincos = min (cos(base.max_pixrad()),0.999999999999999); for (int m=0; m void check_pixangpix() { cout << "testing ang2pix(pix2ang(m))==m " << bname() << endl; int omax=T_Healpix_Base::order_max; for (int order=0; order<=omax; ++order) { T_Healpix_Base base1 (order,RING), base2 (order,NEST); for (int m=0; m() << endl; int omax=T_Healpix_Base::order_max; for (int order=0; order<=omax; ++order) { T_Healpix_Base base (order,NEST), base2(order,RING); double maxang = 2.01*base.max_pixrad(); for (int m=0; m nb,nb2; vec3 pixpt = base.pix2vec(pix); base.neighbors(pix,nb); base2.neighbors(base.nest2ring(pix),nb2); for (int n=0; n<8; ++n) if (nb[n]<0) planck_assert(nb2[n]<0,"neighbor inconsistency"); else planck_assert(base.nest2ring(nb[n])==nb2[n],"neighbor inconsistency"); sort(&nb[0],&nb[0]+8); int check=0; for (int n=0; n<8; ++n) { if (nb[n]<0) ++check; else { if (v_angle(base.pix2vec(nb[n]),pixpt)>maxang) cout << " PROBLEM: order = " << order << ", pix = " << pix << endl; if ((n>0) && (nb[n]==nb[n-1])) cout << " PROBLEM: order = " << order << ", pix = " << pix << endl; } } planck_assert((check<=1)||((order==0)&&(check<=2)),"too few neighbors"); } } for (I nside=3; nside<(I(1)< base (nside,RING,SET_NSIDE); double maxang = 2.01*base.max_pixrad(); for (int m=0; m nb; vec3 pixpt = base.pix2vec(pix); base.neighbors(pix,nb); for (int n=0; n<8; ++n) if ((nb[n]>=0) && (v_angle(base.pix2vec(nb[n]),pixpt)>maxang)) cout << " PROBLEM: nside = " << nside << ", pix = " << pix << endl; } } } void check_swap_scheme() { cout << "testing whether double swap_scheme() returns the original map" << endl << "(for orders 0 to 10)." << endl; for (int order=0; order<=10; ++order) { Healpix_Map map(order,NEST); for (int m=0; m map (order,scheme); map.fill(false); Healpix_Map vmap(order,scheme); for (int m=0; m pixset; for (int m=0; m<100000; ++m) { pointing ptg; random_dir (ptg); double rad = pi/1 * rng.rand_uni(); map.query_disc(ptg,rad,pixset); vec3 vptg=ptg; double cosrad=cos(rad); for (tsize j=0; jcosrad; if (inside^map[i]) cout << " PROBLEM: order = " << order << ", ptg = " << ptg << endl; } for (tsize j=0; jvoid check_query_disc() { cout << "checking query_disc() " << bname() << endl; int omax=min(20,T_Healpix_Base::order_max); for (int order=0; order<=omax; ++order) { T_Healpix_Base rbase (order,RING), nbase (order,NEST); rangeset pr,pn; int niter=max(1,min(1000,100000>>order)); for (int m=0; m0; fct>>=1) { rangeset pri,pni; rbase.query_disc_inclusive(ptg,rad,pri,fct); nbase.query_disc_inclusive(ptg,rad,pni,fct); if (pni.nval()>pri.nval()) cout << "PROBLEM: RING inclusive < NEST inclusive" << endl; if (pni.nval() NEST inclusive " << order << " " << fct << endl; if (order<5) // takes too long for high resolutions { for (tsize i=0; ivoid check_query_polygon() { cout << "checking query_polygon() " << bname() << endl; int omax=min(20,T_Healpix_Base::order_max); for (int order=0; order<=omax; ++order) { T_Healpix_Base rbase (order,RING), nbase (order,NEST); rangeset pixset; int niter=max(1,min(1000,100000>>order)); for (int m=0; m corner(3); random_dir(corner[0]); random_dir(corner[1]); random_dir(corner[2]); rbase.query_polygon(corner,pixset); I nval = pixset.nval(); nbase.query_polygon(corner,pixset); if (nval!=pixset.nval()) cout << " PROBLEM: number of pixels different: " << nval << " vs. " << pixset.nval() << endl; rbase.query_polygon_inclusive(corner,pixset,4); I nv1=pixset.nval(); nbase.query_polygon_inclusive(corner,pixset,4); I nv2=pixset.nval(); if (nv1 map (order,RING), map2 (order,NEST), map3 (order,RING); for (int m=0; m map (order,RING), map2(1,RING); for (int m=0; m map (nside,RING,SET_NSIDE), map2(1,RING,SET_NSIDE); for (int m=0; m >&almT, Alm >&almG, Alm >&almC, int lmax, int mmax) { almT.Set(lmax,mmax); almG.Set(lmax,mmax); almC.Set(lmax,mmax); for (int l=0; l<=lmax; ++l) { almT(l,0).re=rng.rand_gauss(); almT(l,0).im=0.; almG(l,0).re=rng.rand_gauss(); almG(l,0).im=0.; almC(l,0).re=rng.rand_gauss(); almC(l,0).im=0.; } for (int m=1; m<=mmax; ++m) for (int l=m; l<=lmax; ++l) { almT(l,m).re=rng.rand_gauss(); almT(l,m).im=rng.rand_gauss(); almG(l,m).re=rng.rand_gauss(); almG(l,m).im=rng.rand_gauss(); almC(l,m).re=rng.rand_gauss(); almC(l,m).im=rng.rand_gauss(); } almG(0,0)=almC(0,0)=almG(1,0)=almC(1,0)=almG(1,1)=almC(1,1)=0; } void random_alm (Alm >&alm, int lmax, int mmax) { alm.Set(lmax,mmax); for (int l=0; l<=lmax; ++l) { alm(l,0).re=rng.rand_gauss(); alm(l,0).im=0.; } for (int m=1; m<=mmax; ++m) for (int l=m; l<=lmax; ++l) { alm(l,m).re=rng.rand_gauss(); alm(l,m).im=rng.rand_gauss(); } } void check_alm (const Alm >&oalm, const Alm >&alm, double epsilon) { for (int m=0; m<=alm.Mmax(); ++m) for (int l=m; l<=alm.Lmax(); ++l) { if (!abs_approx(oalm(l,m).re,alm(l,m).re,epsilon)) cout << "Problemr " << l << " " << m << endl; if (!abs_approx(oalm(l,m).im,alm(l,m).im,epsilon)) cout << "Problemi " << l << " " << m << endl; } } void check_alm2map2alm (int lmax, int mmax, int nside) { cout << "testing whether a_lm->map->a_lm returns original a_lm" << endl; cout << "lmax=" << lmax <<", mmax=" << mmax << ", nside=" << nside << endl; const double epsilon = 1e-8; Alm > oalmT(lmax,mmax),almT(lmax,mmax), oalmG(lmax,mmax),almG(lmax,mmax),oalmC(lmax,mmax),almC(lmax,mmax); Healpix_Map mapT(nside,RING,SET_NSIDE), mapQ(nside,RING,SET_NSIDE), mapU(nside,RING,SET_NSIDE); random_alm(oalmT,oalmG,oalmC,lmax,mmax); alm2map(oalmT,mapT); map2alm_iter2(mapT,almT,1e-12,1e-12); check_alm (oalmT, almT, epsilon); alm2map_spin(oalmG,oalmC,mapQ,mapU,1); map2alm_spin_iter2(mapQ,mapU,almG,almC,1,1e-12,1e-12); check_alm (oalmG, almG, epsilon); check_alm (oalmC, almC, epsilon); alm2map_pol(oalmT,oalmG,oalmC,mapT,mapQ,mapU); map2alm_pol_iter2(mapT,mapQ,mapU,almT,almG,almC,1e-12,1e-12); check_alm (oalmT, almT, epsilon); check_alm (oalmG, almG, epsilon); check_alm (oalmC, almC, epsilon); } void check_smooth_alm () { cout << "testing whether unsmooth(smooth(a_lm)) returns a_lm" << endl; const double epsilon = 1e-14; const double fwhm = 100.*arcmin2rad; const int lmax=300, mmax=300; Alm > oalmT(lmax,mmax),almT(lmax,mmax), oalmG(lmax,mmax),almG(lmax,mmax),oalmC(lmax,mmax),almC(lmax,mmax); random_alm(oalmT,oalmG,oalmC,lmax,mmax); almT=oalmT; almG=oalmG; almC=oalmC; smoothWithGauss (almT, fwhm); smoothWithGauss (almT, -fwhm); check_alm (oalmT, almT, epsilon); almT=oalmT; smoothWithGauss (almT, almG, almC, fwhm); smoothWithGauss (almT, almG, almC, -fwhm); check_alm (oalmT, almT, epsilon); check_alm (oalmG, almG, epsilon); check_alm (oalmC, almC, epsilon); } void check_rot_alm () { cout << "testing whether rot^-1(rot(a_lm)) returns a_lm" << endl; const double epsilon = 2e-13; const int lmax=300; Alm > oalm(lmax,lmax),alm(lmax,lmax); random_alm(oalm,lmax,lmax); alm=oalm; rotate_alm (alm,3,4,5); rotate_alm (alm,-5,-4,-3); check_alm (oalm, alm, epsilon); } void check_isqrt() { cout << "testing whether isqrt() works reliably" << endl; uint64 val=uint64(0xF234)<<16, valsq=val*val; if (isqrt(valsq)!=val) cout << "PROBLEM1" << endl; if (isqrt(valsq-1)!=val-1) cout << "PROBLEM2" << endl; } void check_pix2ang_acc() { cout << "testing accuracy of pix2ang at the poles" << endl; for (int m=0; m<=29;++m) { Healpix_Base2 base(m,RING); if (base.pix2ang(1).theta==0.) cout << "PROBLEM: order " << m << endl; } } const int nsteps=1000000; templatevoid perf_neighbors(const string &name, Healpix_Ordering_Scheme scheme) { tsize cnt=0; wallTimers.start(name); int omax=T_Healpix_Base::order_max; for (int order=0; order<=omax; ++order) { T_Healpix_Base base (order,scheme); I dpix=max(base.Npix()/nsteps,I(1)); fix_arr nres; for (I pix=0; pixvoid perf_pix2ang(const string &name, Healpix_Ordering_Scheme scheme, double &dummy) { tsize cnt=0; wallTimers.start(name); int omax=T_Healpix_Base::order_max; for (int order=0; order<=omax; ++order) { T_Healpix_Base base (order,scheme); I dpix=max(base.Npix()/nsteps,I(1)); for (I pix=0; pixvoid perf_pix2vec(const string &name, Healpix_Ordering_Scheme scheme, double &dummy) { tsize cnt=0; wallTimers.start(name); int omax=T_Healpix_Base::order_max; for (int order=0; order<=omax; ++order) { T_Healpix_Base base (order,scheme); I dpix=max(base.Npix()/nsteps,I(1)); for (I pix=0; pixvoid perf_pix2zphi(const string &name, Healpix_Ordering_Scheme scheme, double &dummy) { tsize cnt=0; wallTimers.start(name); int omax=T_Healpix_Base::order_max; for (int order=0; order<=omax; ++order) { T_Healpix_Base base (order,scheme); I dpix=max(base.Npix()/nsteps,I(1)); double z,phi; for (I pix=0; pixvoid perf_zphi2pix(const string &name, Healpix_Ordering_Scheme scheme, double &dummy) { tsize cnt=0; wallTimers.start(name); int omax=T_Healpix_Base::order_max; double dz=2./sqrt(nsteps); double dph=twopi/sqrt(nsteps); for (int order=0; order<=omax; ++order) { T_Healpix_Base base (order,scheme); for (double z=-1; z<1; z+=dz) for (double phi=0; phivoid perf_ang2pix(const string &name, Healpix_Ordering_Scheme scheme, double &dummy) { tsize cnt=0; wallTimers.start(name); int omax=T_Healpix_Base::order_max; double dth=pi/sqrt(nsteps); double dph=twopi/sqrt(nsteps); for (int order=0; order<=omax; ++order) { T_Healpix_Base base (order,scheme); for (double theta=0; thetavoid perf_ring2nest(const string &name,double &dummy) { tsize cnt=0; wallTimers.start(name); int omax=T_Healpix_Base::order_max; for (int order=0; order<=omax; ++order) { T_Healpix_Base base (order,RING); I dpix=max(base.Npix()/nsteps,I(1)); for (I pix=0; pixvoid perf_nest2ring(const string &name,double &dummy) { tsize cnt=0; wallTimers.start(name); int omax=T_Healpix_Base::order_max; for (int order=0; order<=omax; ++order) { T_Healpix_Base base (order,RING); I dpix=max(base.Npix()/nsteps,I(1)); for (I pix=0; pixvoid perf_peano2nest(const string &name,double &dummy) { tsize cnt=0; wallTimers.start(name); int omax=T_Healpix_Base::order_max; for (int order=0; order<=omax; ++order) { T_Healpix_Base base (order,NEST); I dpix=max(base.Npix()/nsteps,I(1)); for (I pix=0; pixvoid perf_nest2peano(const string &name,double &dummy) { tsize cnt=0; wallTimers.start(name); int omax=T_Healpix_Base::order_max; for (int order=0; order<=omax; ++order) { T_Healpix_Base base (order,NEST); I dpix=max(base.Npix()/nsteps,I(1)); for (I pix=0; pixvoid perf_query_disc(const string &name, Healpix_Ordering_Scheme scheme, double &dummy) { tsize cnt=0; T_Healpix_Base base(1024,scheme,SET_NSIDE); wallTimers.start(name); for (int m=0; m<1000; ++m) { rangeset pix; base.query_disc(vec3(1,0,0),halfpi/9,pix); dummy+=pix.size(); ++cnt; } wallTimers.stop(name); cout << name << ": " << cnt/wallTimers.acc(name)*1e-3 << "kOps/s" << endl; } templatevoid perf_query_triangle(const string &name, Healpix_Ordering_Scheme scheme, double &dummy) { tsize cnt=0; T_Healpix_Base base(1024,scheme,SET_NSIDE); vector corner; corner.push_back(vec3(1,0.01,0.01)); corner.push_back(vec3(0.01,1,0.01)); corner.push_back(vec3(0.01,0.01,1)); wallTimers.start(name); for (int m=0; m<1000; ++m) { rangeset pix; base.query_polygon(corner,pix); dummy+=pix.size(); ++cnt; } wallTimers.stop(name); cout << name << ": " << cnt/wallTimers.acc(name)*1e-3 << "kOps/s" << endl; } templatevoid perf_query_polygon(const string &name, Healpix_Ordering_Scheme scheme, double &dummy) { tsize cnt=0; T_Healpix_Base base(1024,scheme,SET_NSIDE); vector corner; corner.push_back(vec3(1,0.01,0.01)); corner.push_back(vec3(1,1,-0.3)); corner.push_back(vec3(0.01,1,0.01)); corner.push_back(vec3(0.01,0.01,1)); wallTimers.start(name); for (int m=0; m<1000; ++m) { rangeset pix; base.query_polygon(corner,pix); dummy+=pix.size(); ++cnt; } wallTimers.stop(name); cout << name << ": " << cnt/wallTimers.acc(name)*1e-3 << "kOps/s" << endl; } void perftest() { double dummy=0; cout << "Measuring performance of Healpix_Base methods." << endl; perf_pix2zphi ("pix2zphi (RING):int ",RING,dummy); perf_pix2zphi ("pix2zphi (NEST):int ",NEST,dummy); perf_pix2zphi ("pix2zphi (RING):int64",RING,dummy); perf_pix2zphi ("pix2zphi (NEST):int64",NEST,dummy); perf_zphi2pix ("zphi2pix (RING):int ",RING,dummy); perf_zphi2pix ("zphi2pix (NEST):int ",NEST,dummy); perf_zphi2pix ("zphi2pix (RING):int64",RING,dummy); perf_zphi2pix ("zphi2pix (NEST):int64",NEST,dummy); perf_pix2ang ("pix2ang (RING):int ",RING,dummy); perf_pix2ang ("pix2ang (NEST):int ",NEST,dummy); perf_pix2ang ("pix2ang (RING):int64",RING,dummy); perf_pix2ang ("pix2ang (NEST):int64",NEST,dummy); perf_ang2pix ("ang2pix (RING):int ",RING,dummy); perf_ang2pix ("ang2pix (NEST):int ",NEST,dummy); perf_ang2pix ("ang2pix (RING):int64",RING,dummy); perf_ang2pix ("ang2pix (NEST):int64",NEST,dummy); perf_pix2vec ("pix2vec (RING):int ",RING,dummy); perf_pix2vec ("pix2vec (NEST):int ",NEST,dummy); perf_pix2vec ("pix2vec (RING):int64",RING,dummy); perf_pix2vec ("pix2vec (NEST):int64",NEST,dummy); perf_neighbors ("neighbors(NEST):int ",NEST); perf_neighbors ("neighbors(RING):int ",RING); perf_neighbors("neighbors(NEST):int64",NEST); perf_neighbors("neighbors(RING):int64",RING); perf_ring2nest ("ring2nest :int ",dummy); perf_ring2nest("ring2nest :int64",dummy); perf_nest2ring ("nest2ring :int ",dummy); perf_nest2ring("nest2ring :int64",dummy); perf_peano2nest ("peano2nest :int ",dummy); perf_peano2nest("peano2nest :int64",dummy); perf_nest2peano ("nest2peano :int ",dummy); perf_nest2peano("nest2peano :int64",dummy); perf_query_disc ("query_disc (RING):int ",RING,dummy); perf_query_disc ("query_disc (NEST):int ",NEST,dummy); perf_query_disc ("query_disc (RING):int64",RING,dummy); perf_query_disc ("query_disc (NEST):int64",NEST,dummy); perf_query_triangle ("query_triangle(RING):int ",RING,dummy); perf_query_triangle ("query_triangle(NEST):int ",NEST,dummy); perf_query_triangle("query_triangle(RING):int64",RING,dummy); perf_query_triangle("query_triangle(NEST):int64",NEST,dummy); perf_query_polygon ("query_polygon (RING):int ",RING,dummy); perf_query_polygon ("query_polygon (NEST):int ",NEST,dummy); perf_query_polygon ("query_polygon (RING):int64",RING,dummy); perf_query_polygon ("query_polygon (NEST):int64",NEST,dummy); if (dummy<0) cout << dummy << endl; } } // unnamed namespace int main(int argc, const char **argv) { module_startup ("hpxtest",argc,argv,1,""); perftest(); check_isqrt(); check_pix2ang_acc(); check_smooth_alm(); check_rot_alm(); check_alm2map2alm(620,620,256); check_alm2map2alm(620,2,256); check_average(); check_import(); check_ringnestring(); check_ringnestring(); check_nestpeanonest(); check_nestpeanonest(); check_pixzphipix(); check_pixzphipix(); check_zphipixzphi(); check_zphipixzphi(); check_pixangpix(); check_pixangpix(); check_neighbors(); check_neighbors(); check_swap_scheme(); check_query_disc_strict(RING); check_query_disc_strict(NEST); check_query_disc(); check_query_disc(); check_query_polygon(); check_query_polygon(); } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/median_filter_cxx_module.cc0000650000175000017530000000513612255154051032224 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2005-2012 Max-Planck-Society * Author: Martin Reinecke */ #include "healpix_map.h" #include "healpix_map_fitsio.h" #include "fitshandle.h" #include "levels_facilities.h" #include "lsconstants.h" #include "announce.h" #include "string_utils.h" using namespace std; namespace { template typename iterator_traits::value_type median(Iterator first, Iterator last) { Iterator mid = first+(last-first-1)/2; nth_element(first,mid,last); if ((last-first)&1) return *mid; return typename iterator_traits::value_type (0.5*((*mid)+(*min_element(mid+1,last)))); } } // unnamed namespace int median_filter_cxx_module (int argc, const char **argv) { module_startup ("median_filter_cxx", argc, argv, 4, " "); double radius = stringToData(argv[3])*arcmin2rad; Healpix_Map inmap; read_Healpix_map_from_fits(argv[1],inmap,1,2); Healpix_Map outmap (inmap.Nside(), inmap.Scheme(), SET_NSIDE); rangeset pixset; vector list; for (int m=0; m0) ? median(list.begin(),list.begin()+cnt) : Healpix_undef; } write_Healpix_map_to_fits (argv[2],outmap,PLANCK_FLOAT32); return 0; } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/anafast_cxx_module.cc0000654000175000017530000001104712264023644031044 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2003-2013 Max-Planck-Society * Author: Martin Reinecke */ #include "xcomplex.h" #include "paramfile.h" #include "healpix_data_io.h" #include "alm.h" #include "alm_fitsio.h" #include "healpix_map.h" #include "healpix_map_fitsio.h" #include "powspec.h" #include "powspec_fitsio.h" #include "alm_healpix_tools.h" #include "alm_powspec_tools.h" #include "fitshandle.h" #include "levels_facilities.h" #include "lsconstants.h" #include "announce.h" using namespace std; namespace { template void anafast_cxx (paramfile ¶ms) { int nlmax = params.template find("nlmax"); int nmmax = params.template find("nmmax",nlmax); string infile = params.template find("infile"); string outfile = params.template find("outfile",""); string outfile_alms = params.template find("outfile_alms",""); planck_assert ((outfile!="") || (outfile_alms!=""), "no output specified, nothing done"); bool polarisation = params.template find("polarisation"); int num_iter = params.template find("iter_order",0); bool remove_mono = params.template find("remove_monopole",false); if (!polarisation) { Healpix_Map map; read_Healpix_map_from_fits(infile,map,1,2); double avg=0.; if (remove_mono) { avg=map.average(); map.Add(T(-avg)); } tsize nmod = map.replaceUndefWith0(); if (nmod!=0) cout << "WARNING: replaced " << nmod << " undefined map pixels with a value of 0" << endl; arr weight; get_ring_weights (params,map.Nside(),weight); Alm > alm(nlmax,nmmax); if (map.Scheme()==NEST) map.swap_scheme(); map2alm_iter(map,alm,num_iter,weight); alm(0,0) += T(avg*sqrt(fourpi)); if (outfile!="") { PowSpec powspec; extract_powspec (alm,powspec); write_powspec_to_fits (outfile,powspec,1); } if (outfile_alms!="") write_Alm_to_fits(outfile_alms,alm,nlmax,nmmax,planckType()); } else { Healpix_Map mapT, mapQ, mapU; read_Healpix_map_from_fits(infile,mapT,mapQ,mapU,2); double avg=0.; if (remove_mono) { avg=mapT.average(); mapT.Add(T(-avg)); } tsize nmod = mapT.replaceUndefWith0()+mapT.replaceUndefWith0() +mapU.replaceUndefWith0(); if (nmod!=0) cout << "WARNING: replaced " << nmod << " undefined map pixels with a value of 0" << endl; arr weight; get_ring_weights (params,mapT.Nside(),weight); Alm > almT(nlmax,nmmax), almG(nlmax,nmmax), almC(nlmax,nmmax); if (mapT.Scheme()==NEST) mapT.swap_scheme(); if (mapQ.Scheme()==NEST) mapQ.swap_scheme(); if (mapU.Scheme()==NEST) mapU.swap_scheme(); map2alm_pol_iter (mapT,mapQ,mapU,almT,almG,almC,num_iter,weight); almT(0,0) += T(avg*sqrt(fourpi)); if (outfile!="") { PowSpec powspec; extract_powspec (almT,almG,almC,powspec); params.template find("full_powerspectrum",false) ? write_powspec_to_fits (outfile,powspec,6) : write_powspec_to_fits (outfile,powspec,4); } if (outfile_alms!="") write_Alm_to_fits (outfile_alms,almT,almG,almC,nlmax,nmmax,planckType()); } } } // unamed namespace int anafast_cxx_module (int argc, const char **argv) { module_startup ("anafast_cxx", argc, argv); paramfile params (getParamsFromCmdline(argc,argv)); bool dp = params.find ("double_precision",false); dp ? anafast_cxx(params) : anafast_cxx(params); return 0; } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/healpix_map.cc0000650000175000017530000000525012255154051027457 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2003-2013 Max-Planck-Society * Author: Martin Reinecke */ #include "healpix_map.h" using namespace std; template void Healpix_Map::Import_degrade (const Healpix_Map &orig, bool pessimistic) { planck_assert(nside_ adder; for (int j=fact*y; j(orig.map[opix],Healpix_undef)) { ++hits; adder.add(orig.map[opix]); } } map[m] = T((hits::Import_degrade (const Healpix_Map &orig, bool pessimistic); template void Healpix_Map::Import_degrade (const Healpix_Map &orig, bool pessimistic); template void Healpix_Map::minmax (T &Min, T &Max) const { Min = T(1e30); Max = T(-1e30); for (int m=0; m(val,Healpix_undef)) { if (val>Max) Max=val; if (val::minmax (float &Min, float &Max) const; template void Healpix_Map::minmax (double &Min, double &Max) const; healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/anafast_cxx.cc0000650000175000017530000000027612255154051027472 0ustar zoncaplanck00000000000000#include "levels_facilities.h" #include "error_handling.h" int main (int argc, const char **argv) { PLANCK_DIAGNOSIS_BEGIN anafast_cxx_module (argc, argv); PLANCK_DIAGNOSIS_END } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/alm_fitsio.h0000650000175000017530000001140212255154051027154 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file alm_fitsio.h * FITS I/O for spherical harmonic coefficients * * Copyright (C) 2003-2010 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_ALM_FITSIO_H #define PLANCK_ALM_FITSIO_H #include #include "xcomplex.h" #include "datatypes.h" #include "fitshandle.h" template class Alm; /*! \defgroup alm_fitsio_group FITS-based I/O of a_lm */ /*! \{ */ /*! Returns the maximum \a l and \a m multipole moments found in the FITS HDU pointed to be \a inp in \a lmax and \a mmax. */ void get_almsize(fitshandle &inp, int &lmax, int &mmax); /*! Returns the maximum \a l and \a m multipole moments found in the HDU \a hdunum of file \a filename in \a lmax and \a mmax. */ void get_almsize(const std::string &filename, int &lmax, int &mmax, int hdunum=2); /*! Returns the maximum \a l and \a m multipole moments found in the HDUs 2, 3 and 4 of file \a filename in \a lmax and \a mmax. */ void get_almsize_pol(const std::string &filename, int &lmax, int &mmax); /*! Reads the a_lm of the FITS binary table pointed to by \a inp into \a alms. \a alms is reallocated with the parameters \a lmax and \a mmax. Values not present in the FITS table are set to zero; values outside the requested (l,m) range are ignored. */ template void read_Alm_from_fits (fitshandle &inp, Alm > &alms, int lmax, int mmax); /*! Opens the FITS file \a filename, jumps to the HDU \a hdunum, then reads the a_lm from the FITS binary table there into \a alms. \a alms is reallocated with the parameters \a lmax and \a mmax. Values not present in the FITS table are set to zero; values outside the requested \a (l,m) range are ignored. */ template void read_Alm_from_fits (const std::string &filename, Alm > &alms, int lmax, int mmax, int hdunum=2); template inline void read_Alm_from_fits (const std::string &filename, Alm > &almT, Alm > &almG, Alm > &almC, int lmax, int mmax, int firsthdu=2) { read_Alm_from_fits (filename, almT, lmax, mmax, firsthdu); read_Alm_from_fits (filename, almG, lmax, mmax, firsthdu+1); read_Alm_from_fits (filename, almC, lmax, mmax, firsthdu+2); } /*! Inserts a new binary table into \a out, which contains three columns of type PLANCK_INT32, \a datatype and \a datatype, respectively. The data in \a alms is written into this table; values outside the requested (\a lmax, \a mmax) range are omitted. */ template void write_Alm_to_fits (fitshandle &out, const Alm > &alms, int lmax, int mmax, PDT datatype); template inline void write_Alm_to_fits (const std::string &outfile, const Alm > &alms, int lmax, int mmax, PDT datatype) { fitshandle out; out.create(outfile); write_Alm_to_fits (out, alms, lmax, mmax, datatype); } template inline void write_Alm_to_fits (const std::string &outfile, const Alm > &almT, const Alm > &almG, const Alm > &almC, int lmax, int mmax, PDT datatype) { fitshandle out; out.create(outfile); write_Alm_to_fits (out, almT, lmax, mmax, datatype); write_Alm_to_fits (out, almG, lmax, mmax, datatype); write_Alm_to_fits (out, almC, lmax, mmax, datatype); } /*! Inserts a new binary table into \a out, which contains three columns of type PLANCK_INT32, \a datatype and \a datatype, respectively. The data in \a alms is written into this table; values outside the requested (\a lmax, \a mmax) range are omitted. Values with an absolute magnitude of zero are not written. */ template void write_compressed_Alm_to_fits (fitshandle &out, const Alm > &alms, int lmax, int mmax, PDT datatype); /*! \} */ #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/hotspots_cxx.cc0000650000175000017530000000027712255154051027741 0ustar zoncaplanck00000000000000#include "levels_facilities.h" #include "error_handling.h" int main (int argc, const char **argv) { PLANCK_DIAGNOSIS_BEGIN hotspots_cxx_module (argc, argv); PLANCK_DIAGNOSIS_END } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/powspec_fitsio.cc0000650000175000017530000000705612255154051030233 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2003-2013 Max-Planck-Society * Author: Martin Reinecke */ #include "powspec_fitsio.h" #include "powspec.h" #include "fitshandle.h" using namespace std; void read_powspec_from_fits (fitshandle &inp, PowSpec &powspec, int nspecs, int lmax) { planck_assert ((nspecs==1)||(nspecs==4)||(nspecs==6), "wrong number of spectra"); arr tt(lmax+1,0),gg(lmax+1,0),cc(lmax+1,0),tg(lmax+1,0), tc(lmax+1,0),gc(lmax+1,0); int lmax_file = safe_cast(inp.nelems(1)-1); if (lmax_file=4) { inp.read_column_raw (2,&gg[0],lmax_read+1); inp.read_column_raw (3,&cc[0],lmax_read+1); inp.read_column_raw (4,&tg[0],lmax_read+1); } if (nspecs==6) { inp.read_column_raw (5,&tc[0],lmax_read+1); inp.read_column_raw (6,&gc[0],lmax_read+1); } if (nspecs==1) powspec.Set(tt); if (nspecs==4) powspec.Set(tt,gg,cc,tg); if (nspecs==6) powspec.Set(tt,gg,cc,tg,tc,gc); } void read_powspec_from_fits (const string &infile, PowSpec &powspec, int nspecs, int lmax, int hdunum) { fitshandle inp; inp.open(infile); inp.goto_hdu(hdunum); read_powspec_from_fits (inp,powspec,nspecs,lmax); } void write_powspec_to_fits (fitshandle &out, const PowSpec &powspec, int nspecs) { planck_assert ((nspecs==1)||(nspecs==4)||(nspecs==6), "incorrect number of spectra"); vector cols; cols.push_back(fitscolumn("Temperature C_l","unknown",1,PLANCK_FLOAT64)); if (nspecs>1) { cols.push_back(fitscolumn("E-mode C_l","unknown",1,PLANCK_FLOAT64)); cols.push_back(fitscolumn("B-mode C_l","unknown",1,PLANCK_FLOAT64)); cols.push_back(fitscolumn("T-E cross-corr.","unknown",1, PLANCK_FLOAT64)); } if (nspecs>4) { cols.push_back(fitscolumn("T-B cross-corr.","unknown",1,PLANCK_FLOAT64)); cols.push_back(fitscolumn("E-B cross-corr.","unknown",1,PLANCK_FLOAT64)); } out.insert_bintab(cols); out.write_column(1,powspec.tt()); if (nspecs>1) { out.write_column(2,powspec.gg()); out.write_column(3,powspec.cc()); out.write_column(4,powspec.tg()); } if (nspecs>4) { out.write_column(5,powspec.tc()); out.write_column(6,powspec.gc()); } } void write_powspec_to_fits (const string &outfile, const PowSpec &powspec, int nspecs) { fitshandle out; out.create(outfile); write_powspec_to_fits(out,powspec,nspecs); } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/alm2map_cxx.cc0000650000175000017530000000027612255154051027406 0ustar zoncaplanck00000000000000#include "levels_facilities.h" #include "error_handling.h" int main (int argc, const char **argv) { PLANCK_DIAGNOSIS_BEGIN alm2map_cxx_module (argc, argv); PLANCK_DIAGNOSIS_END } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/healpix_map_fitsio.cc0000650000175000017530000001546512255154051031045 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2003-2011 Max-Planck-Society * Author: Martin Reinecke */ #include "healpix_map_fitsio.h" #include "healpix_map.h" #include "fitshandle.h" #include "share_utils.h" #include "string_utils.h" using namespace std; namespace { unsigned int healpix_repcount (tsize npix) { if (npix<1024) return 1; if ((npix%1024)==0) return 1024; return isqrt (npix/12); } } // unnamed namespace template void read_Healpix_map_from_fits (fitshandle &inp, Healpix_Map &map, int colnum) { arr myarr; inp.read_entire_column (colnum, myarr); int64 nside = inp.get_key("NSIDE"); planck_assert (int64(myarr.size())==12*nside*nside, string("mismatch between number of map pixels (" +dataToString(myarr.size())+") and Nside ("+dataToString(nside)+")")); map.Set (myarr, string2HealpixScheme(inp.get_key("ORDERING"))); } template void read_Healpix_map_from_fits (fitshandle &inp, Healpix_Map &map, int colnum); template void read_Healpix_map_from_fits (fitshandle &inp, Healpix_Map &map, int colnum); template void read_Healpix_map_from_fits (fitshandle &inp, Healpix_Map &map, int colnum); template void read_Healpix_map_from_fits (const string &filename, Healpix_Map &map, int colnum, int hdunum) { fitshandle inp; inp.open (filename); inp.goto_hdu (hdunum); read_Healpix_map_from_fits (inp,map,colnum); } template void read_Healpix_map_from_fits (const string &filename, Healpix_Map &map, int colnum, int hdunum); template void read_Healpix_map_from_fits (const string &filename, Healpix_Map &map, int colnum, int hdunum); template void read_Healpix_map_from_fits (const string &filename, Healpix_Map &map, int colnum, int hdunum); template void read_Healpix_map_from_fits (fitshandle &inp, Healpix_Map &mapT, Healpix_Map &mapQ, Healpix_Map &mapU) { int64 nside = inp.get_key("NSIDE"); Healpix_Ordering_Scheme scheme = string2HealpixScheme(inp.get_key("ORDERING")); mapT.SetNside(nside,scheme); mapQ.SetNside(nside,scheme); mapU.SetNside(nside,scheme); planck_assert (multiequal(int64(mapT.Npix()),inp.nelems(1),inp.nelems(2), inp.nelems(3)), "mismatch between number of map pixels and Nside"); chunkMaker cm(mapT.Npix(),inp.efficientChunkSize(1)); uint64 offset,ppix; while(cm.getNext(offset,ppix)) { inp.read_column_raw(1,&mapT[offset],ppix,offset); inp.read_column_raw(2,&mapQ[offset],ppix,offset); inp.read_column_raw(3,&mapU[offset],ppix,offset); } } template void read_Healpix_map_from_fits (fitshandle &inp, Healpix_Map &mapT, Healpix_Map &mapQ, Healpix_Map &mapU); template void read_Healpix_map_from_fits (fitshandle &inp, Healpix_Map &mapT, Healpix_Map &mapQ, Healpix_Map &mapU); template void read_Healpix_map_from_fits (const string &filename, Healpix_Map &mapT, Healpix_Map &mapQ, Healpix_Map &mapU, int hdunum) { fitshandle inp; inp.open(filename); inp.goto_hdu(hdunum); read_Healpix_map_from_fits (inp,mapT,mapQ,mapU); } template void read_Healpix_map_from_fits (const string &filename, Healpix_Map &mapT, Healpix_Map &mapQ, Healpix_Map &mapU, int hdunum); template void read_Healpix_map_from_fits (const string &filename, Healpix_Map &mapT, Healpix_Map &mapQ, Healpix_Map &mapU, int hdunum); void prepare_Healpix_fitsmap (fitshandle &out, const Healpix_Base &base, PDT datatype, const arr &colname) { vector cols; int repcount = healpix_repcount (base.Npix()); for (tsize m=0; m void write_Healpix_map_to_fits (fitshandle &out, const Healpix_Map &map, PDT datatype) { arr colname(1); colname[0] = "signal"; prepare_Healpix_fitsmap (out, map, datatype, colname); out.write_column(1,map.Map()); } template void write_Healpix_map_to_fits (fitshandle &out, const Healpix_Map &map, PDT datatype); template void write_Healpix_map_to_fits (fitshandle &out, const Healpix_Map &map, PDT datatype); template void write_Healpix_map_to_fits (fitshandle &out, const Healpix_Map &map, PDT datatype); template void write_Healpix_map_to_fits (fitshandle &out, const Healpix_Map &mapT, const Healpix_Map &mapQ, const Healpix_Map &mapU, PDT datatype) { arr colname(3); colname[0] = "signal"; colname[1] = "Q-pol"; colname[2] = "U-pol"; prepare_Healpix_fitsmap (out, mapT, datatype, colname); chunkMaker cm(mapT.Npix(),out.efficientChunkSize(1)); uint64 offset,ppix; while(cm.getNext(offset,ppix)) { out.write_column_raw(1,&mapT[offset],ppix,offset); out.write_column_raw(2,&mapQ[offset],ppix,offset); out.write_column_raw(3,&mapU[offset],ppix,offset); } } template void write_Healpix_map_to_fits (fitshandle &out, const Healpix_Map &mapT, const Healpix_Map &mapQ, const Healpix_Map &mapU, PDT datatype); template void write_Healpix_map_to_fits (fitshandle &out, const Healpix_Map &mapT, const Healpix_Map &mapQ, const Healpix_Map &mapU, PDT datatype); healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/healpix_map.h0000650000175000017530000002431112255154051027320 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file healpix_map.h * Copyright (C) 2003-2013 Max-Planck-Society * \author Martin Reinecke */ #ifndef HEALPIX_MAP_H #define HEALPIX_MAP_H #include "arr.h" #include "healpix_base.h" //! Healpix value representing "undefined" const double Healpix_undef=-1.6375e30; /*! A HEALPix map of a given datatype */ template class Healpix_Map: public Healpix_Base { private: arr map; public: /*! Constructs an unallocated map. */ Healpix_Map () {} /*! Constructs a map with a given \a order and the ordering scheme \a scheme. */ Healpix_Map (int order, Healpix_Ordering_Scheme scheme) : Healpix_Base (order, scheme), map(npix_) {} /*! Constructs a map with a given \a nside and the ordering scheme \a scheme. */ Healpix_Map (int nside, Healpix_Ordering_Scheme scheme, const nside_dummy) : Healpix_Base (nside, scheme, SET_NSIDE), map(npix_) {} /*! Constructs a map from the contents of \a data and sets the ordering scheme to \a Scheme. The size of \a data must be a valid HEALPix map size. */ Healpix_Map (const arr &data, Healpix_Ordering_Scheme scheme) : Healpix_Base (npix2nside(data.size()), scheme, SET_NSIDE), map(data) {} /*! Deletes the old map, creates a map from the contents of \a data and sets the ordering scheme to \a scheme. The size of \a data must be a valid HEALPix map size. \note On exit, \a data is zero-sized! */ void Set (arr &data, Healpix_Ordering_Scheme scheme) { Healpix_Base::SetNside(npix2nside (data.size()), scheme); map.transfer(data); } /*! Deletes the old map and creates a new map with a given \a order and the ordering scheme \a scheme. */ void Set (int order, Healpix_Ordering_Scheme scheme) { Healpix_Base::Set(order, scheme); map.alloc(npix_); } /*! Deletes the old map and creates a new map with a given \a nside and the ordering scheme \a scheme. */ void SetNside (int nside, Healpix_Ordering_Scheme scheme) { Healpix_Base::SetNside(nside, scheme); map.alloc(npix_); } /*! Fills the map with \a val. */ void fill (const T &val) { map.fill(val); } /*! Imports the map \a orig into the current map, adjusting the ordering scheme. \a orig must have the same resolution as the current map. */ void Import_nograde (const Healpix_Map &orig) { planck_assert (nside_==orig.nside_, "Import_nograde: maps have different nside"); if (orig.scheme_ == scheme_) for (int m=0; m*swapper)(m)] = orig.map[m]; } } } /*! Imports the map \a orig into the current map, adjusting the ordering scheme and the map resolution. \a orig must have lower resolution than the current map, and \a this->Nside() must be an integer multiple of \a orig.Nside(). */ void Import_upgrade (const Healpix_Map &orig) { planck_assert(nside_>orig.nside_,"Import_upgrade: this is no upgrade"); int fact = nside_/orig.nside_; planck_assert (nside_==orig.nside_*fact, "the larger Nside must be a multiple of the smaller one"); #pragma omp parallel { int m; #pragma omp for schedule (dynamic,5000) for (m=0; mNside(). \a pessimistic determines whether or not pixels are set to \a Healpix_undef when not all of the corresponding high-resolution pixels are defined. This method is instantiated for \a float and \a double only. */ void Import_degrade (const Healpix_Map &orig, bool pessimistic=false); /*! Imports the map \a orig into the current map, adjusting the ordering scheme and the map resolution if necessary. When downgrading, \a pessimistic determines whether or not pixels are set to \a Healpix_undef when not all of the corresponding high-resolution pixels are defined. This method is instantiated for \a float and \a double only. */ void Import (const Healpix_Map &orig, bool pessimistic=false) { if (orig.nside_ == nside_) // no up/degrading Import_nograde(orig); else if (orig.nside_ < nside_) // upgrading Import_upgrade(orig); else Import_degrade(orig,pessimistic); } /*! Returns a constant reference to the pixel with the number \a pix. */ const T &operator[] (int pix) const { return map[pix]; } /*! Returns a reference to the pixel with the number \a pix. */ T &operator[] (int pix) { return map[pix]; } /*! Swaps the map ordering from RING to NEST and vice versa. This is done in-place (i.e. with negligible space overhead). */ void swap_scheme() { swapfunc swapper = (scheme_ == NEST) ? &Healpix_Base::ring2nest : &Healpix_Base::nest2ring; arr cycle=swap_cycles(); for (tsize m=0; m*swapper)(istart); while (inew != istart) { map[iold] = map[inew]; iold = inew; inew = (this->*swapper)(inew); } map[iold] = pixbuf; } scheme_ = (scheme_==RING) ? NEST : RING; } /*! performs the actual interpolation using \a pix and \a wgt. */ T interpolation (const fix_arr &pix, const fix_arr &wgt) const { double wtot=0; T res=T(0); for (tsize i=0; i<4; ++i) { T val=map[pix[i]]; if (!approx(val,Healpix_undef)) { res+=T(val*wgt[i]); wtot+=wgt[i]; } } return (wtot==0.) ? T(Healpix_undef) : T(res/wtot); } /*! Returns the interpolated map value at \a ptg */ T interpolated_value (const pointing &ptg) const { fix_arr pix; fix_arr wgt; get_interpol (ptg, pix, wgt); return interpolation (pix, wgt); } /*! Returns a constant reference to the map data. */ const arr &Map() const { return map; } /*! Returns the minimum and maximum value of the map in \a Min and \a Max. This method is instantiated for \a float and \a double only. */ void minmax (T &Min, T &Max) const; /*! Swaps the contents of two Healpix_Map objects. */ void swap (Healpix_Map &other) { Healpix_Base::swap(other); map.swap(other.map); } /*! Returns the average of all defined map pixels. */ double average() const { kahan_adder adder; int pix=0; for (int m=0; m(map[m],Healpix_undef)) { ++pix; adder.add(map[m]); } return (pix>0) ? adder.result()/pix : Healpix_undef; } /*! Adds \a val to all defined map pixels. */ void Add (T val) { for (int m=0; m(map[m],Healpix_undef)) { map[m]+=val; } } /*! Multiplies all defined map pixels by \a val. */ void Scale (T val) { for (int m=0; m(map[m],Healpix_undef)) { map[m]*=val; } } /*! Returns the root mean square of the map, not counting undefined pixels. */ double rms() const { using namespace std; double result=0; int pix=0; for (int m=0; m(map[m],Healpix_undef)) { ++pix; result+=map[m]*map[m]; } return (pix>0) ? sqrt(result/pix) : Healpix_undef; } /*! Returns the maximum absolute value in the map, ignoring undefined pixels. */ T absmax() const { using namespace std; T result=0; for (int m=0; m(map[m],Healpix_undef)) { result = max(result,abs(map[m])); } return result; } /*! Returns \a true, if no pixel has the value \a Healpix_undef, else \a false. */ bool fullyDefined() const { for (int m=0; m(map[m],Healpix_undef)) return false; return true; } /*! Sets all pixels with the value \a Healpix_undef to 0, and returns the number of modified pixels. */ tsize replaceUndefWith0() { tsize res=0; for (int m=0; m(map[m],Healpix_undef)) { map[m]=0.; ++res; } return res; } }; #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/powspec_fitsio.h0000650000175000017530000000450612255154051030072 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file powspec_fitsio.h * Copyright (C) 2003-2013 Max-Planck-Society * \author Martin Reinecke */ #ifndef POWSPEC_FITSIO_H #define POWSPEC_FITSIO_H #include class fitshandle; class PowSpec; /*! \defgroup powspec_fitsio_group FITS-based I/O of power spectra */ /*! \{ */ /*! Reads the power spectrum stored in the FITS binary table pointed to by \a inp into \a powspec. */ void read_powspec_from_fits (fitshandle &inp, PowSpec &powspec, int nspecs, int lmax); /*! Opens the FITS file \a filename, jumps to HDU \a hdunum, and reads \a nspecs columns into \a powspec. \a nspecs must be 1, 4, or 6. */ void read_powspec_from_fits (const std::string &infile, PowSpec &powspec, int nspecs, int lmax, int hdunum=2); /*! Inserts a new binary table into \a out, which contains \a nspecs columns of FITS type TDOUBLE, and writes the components of \a powspec into it. \a nspecs must be 1, 4, or 6. */ void write_powspec_to_fits (fitshandle &out, const PowSpec &powspec, int nspecs); /*! Creates a new FITS file called \a outfile, inserts a binary table, which contains \a nspecs columns of FITS type TDOUBLE, and writes the components of \a powspec into it. \a nspecs must be 1, 4, or 6. */ void write_powspec_to_fits (const std::string &outfile, const PowSpec &powspec, int nspecs); /*! \} */ #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/syn_alm_cxx_module.cc0000650000175000017530000000553112255154051031063 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2003-2011 Max-Planck-Society * Author: Martin Reinecke */ #include "xcomplex.h" #include "paramfile.h" #include "planck_rng.h" #include "alm.h" #include "alm_fitsio.h" #include "powspec.h" #include "powspec_fitsio.h" #include "alm_powspec_tools.h" #include "fitshandle.h" #include "levels_facilities.h" #include "lsconstants.h" #include "announce.h" using namespace std; namespace { template void syn_alm_cxx (paramfile ¶ms) { int nlmax = params.template find("nlmax"); int nmmax = params.template find("nmmax",nlmax); planck_assert(nmmax<=nlmax,"nmmax must not be larger than nlmax"); string infile = params.template find("infile"); string outfile = params.template find("outfile"); int rand_seed = params.template find("rand_seed"); double fwhm = arcmin2rad*params.template find("fwhm_arcmin",0.); bool polarisation = params.template find("polarisation"); PowSpec powspec; int nspecs = polarisation ? 4 : 1; read_powspec_from_fits (infile, powspec, nspecs, nlmax); powspec.smoothWithGauss(fwhm); planck_rng rng(rand_seed); if (polarisation) { Alm > almT(nlmax,nmmax), almG(nlmax,nmmax), almC(nlmax,nmmax); create_alm_pol (powspec, almT, almG, almC, rng); write_Alm_to_fits(outfile,almT,almG,almC,nlmax,nmmax,planckType()); } else { Alm > almT(nlmax,nmmax); create_alm (powspec, almT, rng); write_Alm_to_fits(outfile,almT,nlmax,nmmax,planckType()); } } } // unnamed namespace int syn_alm_cxx_module (int argc, const char **argv) { module_startup ("syn_alm_cxx", argc, argv); paramfile params (getParamsFromCmdline(argc,argv)); bool dp = params.find ("double_precision",false); dp ? syn_alm_cxx(params) : syn_alm_cxx(params); return 0; } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/mult_alm.par.txt0000650000175000017530000000256612255154051030024 0ustar zoncaplanck00000000000000Parameters read by mult_alm: infile (string): input file containing the a_lm outfile (string): output file name for the calculated a_lm fwhm_arcmin_in (real, default=0): FWHM (in arcmin) of a Gaussian beam, which will be _removed_ from the input a_lm fwhm_arcmin_out (real, default=0): FWHM (in arcmin) of a Gaussian beam, which will be used to smoothe the output a_lm nside_pixwin_in (integer, default=0): If this is different from 0, the corresponding pixel window function will be _removed_ from the input a_lm nside_pixwin_out (integer, default=0): If this is different from 0, the corresponding pixel window function will be applied to the output a_lm if ((nside_pixwin_in>0)||(nside_pixwin_out>0)) healpix_data (string): directory containing the Healpix data files endif cl_in (string, default=""): if supplied, the power spectrum from this file will be _removed_ from the input a_lm NOTE: currently only supported for unpolarised a_lm cl_out (string, default=""): if supplied, the power pectrum from this file will be applied to the output a_lm NOTE: currently only supported for unpolarised a_lm polarisation (bool): if false, only the intensity a_lm are generated, if true, T, G and C a_lm are generated double_precision (bool, default=false): if false, the a_lm are read/written in single precision, otherwise in double precision. healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/udgrade_cxx.cc0000650000175000017530000000027612255154051027470 0ustar zoncaplanck00000000000000#include "levels_facilities.h" #include "error_handling.h" int main (int argc, const char **argv) { PLANCK_DIAGNOSIS_BEGIN udgrade_cxx_module (argc, argv); PLANCK_DIAGNOSIS_END } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/alm2map_cxx.par.txt0000650000175000017530000000160712255154051030420 0ustar zoncaplanck00000000000000Parameters read by alm2map_cxx: nlmax (integer): maximum order of l nmmax (integer): maximum order of m (must not be larger than nlmax, default=nlmax) infile (string): input file containing the a_lm outfile (string): output file name for the Healpix map(s) nside (integer): nside parameter for the output map(s) polarisation (bool): if false, only the intensity map is generated, if true, maps for I, Q and U are generated fwhm_arcmin (double, default=0): FWHM in arc minutes of a Gaussian beam, which is used to smooth the a_lm pixel_window (bool, default=false): if true, the a_lm are multiplied by the appropriate pixel window function if (pixel_window) healpix_data (string): directory containing the Healpix data files endif double_precision (bool, default=false): if false, a_lm and maps are read/written in single precision, otherwise in double precision. healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Healpix_cxx/rotalm_cxx.cc0000650000175000017530000001030512255154051027345 0ustar zoncaplanck00000000000000/* * This file is part of Healpix_cxx. * * Healpix_cxx is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Healpix_cxx is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Healpix_cxx; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA * * For more information about HEALPix, see http://healpix.sourceforge.net */ /* * Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2005-2011 Max-Planck-Society * Author: Martin Reinecke */ #include "alm.h" #include "alm_fitsio.h" #include "fitshandle.h" #include "alm_powspec_tools.h" #include "trafos.h" #include "announce.h" #include "string_utils.h" #include "lsconstants.h" using namespace std; namespace { Trafo maketrafo (int num) { switch (num) { case 1: return Trafo(2000,2000,Equatorial,Galactic); case 2: return Trafo(2000,2000,Galactic,Equatorial); case 3: return Trafo(2000,2000,Equatorial,Ecliptic); case 4: return Trafo(2000,2000,Ecliptic,Equatorial); case 5: return Trafo(2000,2000,Ecliptic,Galactic); case 6: return Trafo(2000,2000,Galactic,Ecliptic); case 7: return Trafo(1950,1950,Equatorial,Galactic); case 8: return Trafo(1950,1950,Galactic,Equatorial); case 9: return Trafo(1950,1950,Equatorial,Ecliptic); case 10: return Trafo(1950,1950,Ecliptic,Equatorial); case 11: return Trafo(1950,1950,Ecliptic,Galactic); case 12: return Trafo(1950,1950,Galactic,Ecliptic); default: planck_fail("Unsupported transformation "+dataToString(num)); } } } // unnamed namespace int main(int argc, const char **argv) { PLANCK_DIAGNOSIS_BEGIN module_startup("rotalm_cxx", (argc==5)||(argc==7), "Usage: rotalm_cxx \n" "or : rotalm_cxx \n\n" "itransform: 1: Equatorial (2000) -> Galactic (2000)\n" " 2: Galactic (2000) -> Equatorial (2000)\n" " 3: Equatorial (2000) -> Ecliptic (2000)\n" " 4: Ecliptic (2000) -> Equatorial (2000)\n" " 5: Ecliptic (2000) -> Galactic (2000)\n" " 6: Galactic (2000) -> Ecliptic (2000)\n" " 7: Equatorial (1950) -> Galactic (1950)\n" " 8: Galactic (1950) -> Equatorial (1950)\n" " 9: Equatorial (1950) -> Ecliptic (1950)\n" " 10: Ecliptic (1950) -> Equatorial (1950)\n" " 11: Ecliptic (1950) -> Galactic (1950)\n" " 12: Galactic (1950) -> Ecliptic (1950)\n\n" "psi, theta, phi: Euler angles (in degrees)\n\n" "pol: T or F\n"); string infile = argv[1]; string outfile = argv[2]; bool polarisation = stringToData(argv[argc-1]); rotmatrix rm; if (argc==5) { int trafo = stringToData(argv[3]); Trafo tr(maketrafo(trafo)); rm=tr.Matrix(); } else { rm.Make_CPAC_Euler_Matrix(degr2rad*stringToData(argv[5]), degr2rad*stringToData(argv[4]), degr2rad*stringToData(argv[3])); } Alm > almT,almG,almC; if (!polarisation) { int lmax, dummy; get_almsize (infile,lmax,dummy); read_Alm_from_fits (infile, almT, lmax, lmax); rotate_alm(almT,rm); write_Alm_to_fits (outfile,almT,lmax,lmax,PLANCK_FLOAT32); } else { int lmax, dummy; get_almsize_pol (infile,lmax,dummy); read_Alm_from_fits (infile, almT, almG, almC, lmax, lmax); rotate_alm(almT,almG,almC,rm); write_Alm_to_fits (outfile,almT,almG,almC,lmax,lmax,PLANCK_FLOAT32); } PLANCK_DIAGNOSIS_END } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/0000755000175000017500000000000012351601662024506 5ustar zoncazonca00000000000000healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/walltimer.h0000650000175000017530000000531312255154051027015 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file walltimer.h * Functionality related to wall-clock timers * * Copyright (C) 2010, 2011 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_WALLTIMER_H #define PLANCK_WALLTIMER_H #include #include #include class wallTimer { private: double t_acc, t_started; bool running; public: wallTimer() : t_acc(0.), t_started(0.), running(false) {} void start(double wtime_now) { if (!running) { t_started=wtime_now; running=true; } } void start(); void stop(double wtime_now) { if (running) { t_acc+=wtime_now-t_started; running=false; } } void stop(); void reset() { t_acc=t_started=0.; running=false;} double acc(double wtime_now) const { return running ? t_acc+wtime_now-t_started : t_acc; } double acc() const; }; class wallTimerSet { public: typedef std::map maptype; private: maptype lut; std::vector timer; public: int getIndex(const std::string &name); void start(int index); void stop(int index); void stopstart(int index1, int index2); void reset(int index); double acc(int index); void start(const std::string &name); void stop(const std::string &name); void stopstart(const std::string &name1, const std::string &name2); void reset(const std::string &name); double acc(const std::string &name); void report() const; const maptype &table() const { return lut; } }; extern wallTimerSet wallTimers; void tstack_push(const std::string &name); void tstack_pop(const std::string &name); void tstack_pop(); void tstack_replace(const std::string &name1, const std::string &name2); void tstack_replace(const std::string &name); void tstack_report(const std::string &stem); #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/sse_utils_cxx.h0000650000175000017530000003122312255154051027710 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file sse_utils_cxx.h * SSE/SSE2/SSE3-related functionality for C++ * * Copyright (C) 2011, 2012 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_SSE_UTILS_CXX_H #define PLANCK_SSE_UTILS_CXX_H template class svec; #if (defined(__SSE2__)) #include #include template<> class svec { public: typedef int Ts; typedef __m128i Tv; typedef union { Tv v; Ts d[4]; } Tu; Tv v; svec () {} svec (const svec &b) : v(b.v) {} svec (const Tv &b) : v(b) {} svec (const Ts &val) : v(_mm_set1_epi32(val)) {} svec (const Ts &val1, const Ts &val2, const Ts &val3, const Ts &val4) : v(_mm_set_epi32(val4,val3,val2,val1)) {} const svec &operator= (const Ts &val) { v=_mm_set1_epi32(val); return *this; } const svec &operator= (const svec &b) { v=b.v; return *this; } Ts operator[] (int p) const { Tu u; u.v=v; return u.d[p]; } void set (int p, Ts val) { Tu u; u.v=v; u.d[p]=val; v=u.v; } const svec &operator+= (const svec &b) { v=_mm_add_epi32(v,b.v); return *this; } const svec &operator-= (const svec &b) { v=_mm_sub_epi32(v,b.v); return *this; } svec operator+ (const svec &b) const { return svec(_mm_add_epi32(v,b.v)); } svec operator- (const svec &b) const { return svec(_mm_sub_epi32(v,b.v)); } const svec &operator&= (const svec &b) { v=_mm_and_si128(v,b.v); return *this; } const svec &operator|= (const svec &b) { v=_mm_or_si128(v,b.v); return *this; } const svec &operator^= (const svec &b) { v=_mm_xor_si128(v,b.v); return *this; } svec operator& (const svec &b) const { return svec(_mm_and_si128(v,b.v)); } svec operator| (const svec &b) const { return svec(_mm_or_si128(v,b.v)); } svec operator^ (const svec &b) const { return svec(_mm_xor_si128(v,b.v)); } svec andnot (const svec &b) const { return svec(_mm_andnot_si128(v,b.v)); } const svec &operator<<= (int b) { v=_mm_slli_epi32(v,b); return *this; } svec operator<< (int b) const { return svec(_mm_slli_epi32(v,b)); } const svec &operator>>= (int b) { v=_mm_srai_epi32(v,b); return *this; } svec operator>> (int b) const { return svec(_mm_srai_epi32(v,b)); } svec eq (const svec &b) const { return svec(_mm_cmpeq_epi32(v,b.v)); } svec gt (const svec &b) const { return svec(_mm_cmpgt_epi32(v,b.v)); } svec lt (const svec &b) const { return svec(_mm_cmplt_epi32(v,b.v)); } }; typedef svec V4si; #if 0 template<> class svec { public: typedef long long Ts; typedef __m128i Tv; typedef union { Tv v; Ts d[2]; } Tu; Tv v; svec () {} svec (const svec &b) : v(b.v) {} svec (const Tv &b) : v(b) {} svec (const Ts &val) : v(_mm_set1_epi64x(val)) {} svec (const Ts &val1, const Ts &val2) : v(_mm_set_epi64x(val2,val1)) {} const svec &operator= (const Ts &val) { v=_mm_set1_epi64x(val); return *this; } const svec &operator= (const svec &b) { v=b.v; return *this; } int operator[] (int p) const { Tu u; u.v=v; return u.d[p]; } void set (int p, int val) { Tu u; u.v=v; u.d[p]=val; v=u.v; } const svec &operator+= (const svec &b) { v=_mm_add_epi64(v,b.v); return *this; } const svec &operator-= (const svec &b) { v=_mm_sub_epi64(v,b.v); return *this; } svec operator+ (const svec &b) const { return svec(_mm_add_epi64(v,b.v)); } svec operator- (const svec &b) const { return svec(_mm_sub_epi64(v,b.v)); } const svec &operator&= (const svec &b) { v=_mm_and_si128(v,b.v); return *this; } const svec &operator|= (const svec &b) { v=_mm_or_si128(v,b.v); return *this; } const svec &operator^= (const svec &b) { v=_mm_xor_si128(v,b.v); return *this; } svec operator& (const svec &b) const { return svec(_mm_and_si128(v,b.v)); } svec operator| (const svec &b) const { return svec(_mm_or_si128(v,b.v)); } svec operator^ (const svec &b) const { return svec(_mm_xor_si128(v,b.v)); } svec andnot (const svec &b) const { return svec(_mm_andnot_si128(v,b.v)); } const svec &operator<<= (int b) { v=_mm_slli_epi64(v,b); return *this; } svec operator<< (int b) const { return svec(_mm_slli_epi64(v,b)); } }; typedef svec V2di; #endif template<> class svec { public: typedef float Ts; typedef __m128 Tv; typedef union { Tv v; Ts d[4]; } Tu; Tv v; svec () {} svec (const svec &b) : v(b.v) {} svec (const Tv &b) : v(b) {} svec (const Ts &val) : v(_mm_set1_ps(val)) {} svec (Ts val1, Ts val2, Ts val3, Ts val4) : v(_mm_set_ps(val4,val3,val2,val1)) {} explicit svec (const svec &b) : v(_mm_cvtepi32_ps(b.v)) {} operator svec() const { return svec (_mm_cvtps_epi32(v)); } const svec &operator= (const Ts &val) { v=_mm_set1_ps(val); return *this; } const svec &operator= (const svec &b) { v=b.v; return *this; } Ts operator[] (int p) const { Tu u; u.v=v; return u.d[p]; } void set (int p, Ts val) { Tu u; u.v=v; u.d[p]=val; v=u.v; } const svec &operator+= (const svec &b) { v=_mm_add_ps(v,b.v); return *this; } const svec &operator-= (const svec &b) { v=_mm_sub_ps(v,b.v); return *this; } const svec &operator*= (const svec &b) { v=_mm_mul_ps(v,b.v); return *this; } const svec &operator/= (const svec &b) { v=_mm_div_ps(v,b.v); return *this; } svec operator+ (const svec &b) const { return svec(_mm_add_ps(v,b.v)); } svec operator- (const svec &b) const { return svec(_mm_sub_ps(v,b.v)); } svec operator* (const svec &b) const { return svec(_mm_mul_ps(v,b.v)); } svec operator/ (const svec &b) const { return svec(_mm_div_ps(v,b.v)); } const svec &operator&= (const svec &b) { v=_mm_and_ps(v,b.v); return *this; } const svec &operator|= (const svec &b) { v=_mm_or_ps(v,b.v); return *this; } const svec &operator^= (const svec &b) { v=_mm_xor_ps(v,b.v); return *this; } svec operator& (const svec &b) const { return svec(_mm_and_ps(v,b.v)); } svec andnot (const svec &b) const { return svec(_mm_andnot_ps(v,b.v)); } svec operator| (const svec &b) const { return svec(_mm_or_ps(v,b.v)); } svec operator^ (const svec &b) const { return svec(_mm_xor_ps(v,b.v)); } svec operator- () const { return svec(_mm_xor_ps(_mm_set1_ps(-0.),v)); } svec eq (const svec &b) const { return svec(_mm_cmpeq_ps(v,b.v)); } svec neq (const svec &b) const { return svec(_mm_cmpneq_ps(v,b.v)); } svec lt (const svec &b) const { return svec(_mm_cmplt_ps(v,b.v)); } svec le (const svec &b) const { return svec(_mm_cmple_ps(v,b.v)); } svec gt (const svec &b) const { return svec(_mm_cmpgt_ps(v,b.v)); } svec ge (const svec &b) const { return svec(_mm_cmpge_ps(v,b.v)); } void writeTo (Ts *val) const { _mm_storeu_ps (val, v); } void writeTo (Ts &a, Ts &b, Ts &c, Ts &d) const { Tu u; u.v=v; a=u.d[0]; b=u.d[1]; c=u.d[2]; d=u.d[3]; } void readFrom (const Ts *val) { v=_mm_loadu_ps(val); } void readFrom (Ts a, Ts b, Ts c, Ts d) { v=_mm_set_ps(d,c,b,a); } }; typedef svec V4sf; inline V4sf sqrt(const V4sf &v) { return V4sf(_mm_sqrt_ps(v.v)); } inline V4sf abs(const V4sf &v) { return V4sf(_mm_andnot_ps(_mm_set1_ps(-0.),v.v)); } inline V4sf blend(const V4sf &mask, const V4sf &a, const V4sf &b) { return (mask&a)|(mask.andnot(b)); } inline bool any (const V4sf &a) { return _mm_movemask_ps(a.v)!=0; } inline bool all (const V4sf &a) { return _mm_movemask_ps(a.v)==15; } inline bool none (const V4sf &a) { return _mm_movemask_ps(a.v)==0; } inline V4sf min (const V4sf &a, const V4sf &b) { return _mm_min_ps(a.v,b.v); } inline V4sf max (const V4sf &a, const V4sf &b) { return _mm_max_ps(a.v,b.v); } template<> class svec { public: typedef double Ts; typedef __m128d Tv; typedef union { Tv v; Ts d[2]; } Tu; Tv v; svec () {} svec (const svec &b) : v(b.v) {} svec (const Tv &b) : v(b) {} svec (const Ts &val) : v(_mm_set1_pd(val)) {} svec (const Ts &val1, const Ts &val2) : v(_mm_set_pd(val2,val1)) {} explicit svec (const svec &b) : v(_mm_cvtepi32_pd(b.v)) {} operator svec() const { return svec (_mm_cvtpd_epi32(v)); } const svec &operator= (const Ts &val) { v=_mm_set1_pd(val); return *this; } const svec &operator= (const svec &b) { v=b.v; return *this; } Ts operator[] (int p) const { Tu u; u.v=v; return u.d[p]; } void set (int p, Ts val) { Tu u; u.v=v; u.d[p]=val; v=u.v; } const svec &operator+= (const svec &b) { v=_mm_add_pd(v,b.v); return *this; } const svec &operator-= (const svec &b) { v=_mm_sub_pd(v,b.v); return *this; } const svec &operator*= (const svec &b) { v=_mm_mul_pd(v,b.v); return *this; } const svec &operator/= (const svec &b) { v=_mm_div_pd(v,b.v); return *this; } svec operator+ (const svec &b) const { return svec(_mm_add_pd(v,b.v)); } svec operator- (const svec &b) const { return svec(_mm_sub_pd(v,b.v)); } svec operator* (const svec &b) const { return svec(_mm_mul_pd(v,b.v)); } svec operator/ (const svec &b) const { return svec(_mm_div_pd(v,b.v)); } const svec &operator&= (const svec &b) { v=_mm_and_pd(v,b.v); return *this; } const svec &operator|= (const svec &b) { v=_mm_or_pd(v,b.v); return *this; } const svec &operator^= (const svec &b) { v=_mm_xor_pd(v,b.v); return *this; } svec operator& (const svec &b) const { return svec(_mm_and_pd(v,b.v)); } svec operator| (const svec &b) const { return svec(_mm_or_pd(v,b.v)); } svec operator^ (const svec &b) const { return svec(_mm_xor_pd(v,b.v)); } svec operator- () const { return svec(_mm_xor_pd(_mm_set1_pd(-0.),v)); } svec eq (const svec &b) const { return svec(_mm_cmpeq_pd(v,b.v)); } svec neq (const svec &b) const { return svec(_mm_cmpneq_pd(v,b.v)); } svec lt (const svec &b) const { return svec(_mm_cmplt_pd(v,b.v)); } svec le (const svec &b) const { return svec(_mm_cmple_pd(v,b.v)); } svec gt (const svec &b) const { return svec(_mm_cmpgt_pd(v,b.v)); } svec ge (const svec &b) const { return svec(_mm_cmpge_pd(v,b.v)); } void writeTo (Ts *val) const { _mm_storeu_pd (val, v); } void writeTo (Ts &a, Ts &b) const { _mm_store_sd(&a,v); _mm_storeh_pd(&b,v); } void readFrom (const Ts *val) { v=_mm_loadu_pd(val); } void readFrom (const Ts &a, const Ts &b) { v=_mm_set_pd(b,a); } }; typedef svec V2df; inline V2df sqrt(const V2df &v) { return V2df(_mm_sqrt_pd(v.v)); } inline V2df abs(const V2df &v) { return V2df(_mm_andnot_pd(_mm_set1_pd(-0.),v.v)); } inline V2df blend(const V2df &mask, const V2df &a, const V2df &b) { return V2df(_mm_or_pd(_mm_and_pd(a.v,mask.v),_mm_andnot_pd(mask.v,b.v))); } inline bool any (const V2df &a) { return _mm_movemask_pd(a.v)!=0; } inline bool all (const V2df &a) { return _mm_movemask_pd(a.v)==3; } inline bool none (const V2df &a) { return _mm_movemask_pd(a.v)==0; } template inline T vcast(const V4si &a); template inline T vcast(const V4sf &a); template inline T vcast(const V2df &a); template<> inline V4si vcast (const V4sf &a) { return V4si (_mm_castps_si128(a.v)); } template<> inline V4sf vcast (const V4si &a) { return V4sf (_mm_castsi128_ps(a.v)); } template<> inline V2df vcast (const V4si &a) { return V2df (_mm_castsi128_pd(a.v)); } #endif #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/walltimer.cc0000650000175000017530000001461612255154051027161 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * This file contains functionality related to wall-clock timers * * Copyright (C) 2010, 2011, 2012 Max-Planck-Society * Author: Martin Reinecke */ #include #include #include #include #include #include "walltimer.h" #include "walltime_c.h" #include "error_handling.h" using namespace std; void wallTimer::start() { start(wallTime()); } void wallTimer::stop() { stop(wallTime()); } double wallTimer::acc() const { return acc(wallTime()); } int wallTimerSet::getIndex(const string &name) { maptype::const_iterator it = lut.find(name); if (it!=lut.end()) return it->second; timer.push_back(wallTimer()); lut[name]=timer.size()-1; return timer.size()-1; } void wallTimerSet::start(int index) { timer[index].start(); } void wallTimerSet::stop(int index) { timer[index].stop(); } void wallTimerSet::stopstart(int index1, int index2) { double t=wallTime(); timer[index1].stop(t); timer[index2].start(t); } void wallTimerSet::reset(int index) { timer[index].reset(); } double wallTimerSet::acc(int index) { return timer[index].acc(); } void wallTimerSet::start(const string &name) { start(getIndex(name)); } void wallTimerSet::stop(const string &name) { stop(getIndex(name)); } void wallTimerSet::stopstart(const string &name1, const string &name2) { stopstart(getIndex(name1),getIndex(name2)); } void wallTimerSet::reset(const string &name) { reset(getIndex(name)); } double wallTimerSet::acc(const string &name) { return acc(getIndex(name)); } void wallTimerSet::report() const { cout << "\nWall clock timer report:" << endl; for (maptype::const_iterator it=lut.begin(); it!=lut.end(); ++it) printf(" %-15s: %10.5fs\n", it->first.c_str(), timer[it->second].acc()); cout << "End wall clock timer report\n" << endl; } wallTimerSet wallTimers; namespace { class tstack_node; typedef map::iterator Ti; typedef map::const_iterator Tci; typedef pair Tipair; class tstack_node { public: tstack_node *parent; wallTimer wt; string name; map child; tstack_node(const string &name_, tstack_node *parent_) : parent(parent_), name(name_) {} int max_namelen() const { int res=name.length(); for (Tci it=child.begin(); it!=child.end(); ++it) res=max(res,it->second.max_namelen()); return res; } }; tstack_node tstack_root("root",0); tstack_node *curnode=0; double overhead=0.; struct timecomp { bool operator() (const Tipair &a, const Tipair &b) const { return a.second>b.second; } }; void tstack_report(const tstack_node &node, const string &indent, int twidth, int slen) { double total=node.wt.acc(); vector tmp; for (Tci it=node.child.begin(); it!=node.child.end(); ++it) tmp.push_back(make_pair(it,it->second.wt.acc())); if (tmp.size()>0) { sort(tmp.begin(),tmp.end(),timecomp()); double tsum=0; printf("%s|\n", indent.c_str()); for (unsigned i=0; ifirst).c_str(), 100*tmp[i].second/total,twidth, tmp[i].second); tstack_report(tmp[i].first->second,indent+"| ",twidth,slen); tsum+=tmp[i].second; } printf("%s+- %-*s:%6.2f%% (%*.4fs)\n%s\n",indent.c_str(),slen, "",100*(total-tsum)/total,twidth,total-tsum,indent.c_str()); } } } // unnamed namespace void tstack_push(const string &name) { double t0=wallTime(); if (curnode==0) curnode=&tstack_root; Ti it=curnode->child.find(name); if (it==curnode->child.end()) it=curnode->child.insert (make_pair(name,tstack_node(name,curnode))).first; curnode=&(it->second); double t1=wallTime(); curnode->wt.start(0.5*(t0+t1)); overhead+=t1-t0; } void tstack_pop(const string &name) { double t0=wallTime(); planck_assert(curnode && (curnode->name==name), "invalid tstack operation"); double t1=wallTime(); curnode->wt.stop(0.5*(t0+t1)); curnode=curnode->parent; overhead+=t1-t0; } void tstack_pop() { double t0=wallTime(); planck_assert(curnode, "invalid tstack operation"); double t1=wallTime(); curnode->wt.stop(0.5*(t0+t1)); curnode=curnode->parent; overhead+=t1-t0; } void tstack_replace(const string &name2) { double t0=wallTime(); planck_assert(curnode, "invalid tstack operation"); tstack_node *savenode=curnode; curnode=curnode->parent; Ti it=curnode->child.find(name2); if (it==curnode->child.end()) it=curnode->child.insert(make_pair(name2,tstack_node(name2,curnode))).first; curnode=&(it->second); double t1=wallTime(); double t=0.5*(t0+t1); savenode->wt.stop(t); curnode->wt.start(t); overhead+=t1-t0; } void tstack_replace(const string &name1, const string &name2) { planck_assert(curnode && (curnode->name==name1), "invalid tstack operation"); tstack_replace(name2); } void tstack_report(const string &stem) { const tstack_node *ptr = 0; for (Tci it=tstack_root.child.begin(); it!=tstack_root.child.end(); ++it) if (it->first==stem) ptr=&(it->second); planck_assert(ptr,"invalid stem"); int slen=string("").size(); slen = max(slen,ptr->max_namelen()); double total=ptr->wt.acc(); printf("\nTotal wall clock time for '%s': %1.4fs\n",stem.c_str(),total); int logtime=max(1,int(log10(total)+1)); tstack_report(*ptr,"",logtime+5,slen); printf("\nAccumulated timing overhead: approx. %1.4fs\n",overhead); } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/ls_image.h0000650000175000017530000001362512255154051026602 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file ls_image.h * Classes for creation and output of image files * * Copyright (C) 2003-2012 Max-Planck-Society * \author Martin Reinecke, David Larson */ #ifndef PLANCK_LS_IMAGE_H #define PLANCK_LS_IMAGE_H #include #include #include #include #include "arr.h" #include "datatypes.h" /*! \defgroup imagegroup Image creation */ /*! \{ */ /*! A very simple class for storing RGB colours. */ class Colour { public: float r, /*!< the red component */ g, /*!< the green component */ b; /*!< the blue component */ /*! Default constructor. Does not initialize \a r, \a g and \a b. */ Colour() {} /*! Initializes the colour with \a R, \a G and \a B. */ Colour (float R, float G, float B) : r(R), g(G), b(B) {} /*! Multiplies all components with \a fact. */ const Colour &operator*= (float fact) { r*=fact; g*=fact; b*=fact; return *this; } /*! Returns the sum colour of \a *this and \a c2. */ const Colour operator+ (const Colour &c2) const { return Colour(r+c2.r, g+c2.g, b+c2.b); } /*! Returns \a *this, scaled by \a f. */ const Colour operator* (double f) const { return Colour(float(r*f), float(g*f), float(b*f)); } }; /*! A class for mapping floting-point values into colours. */ class Palette { private: std::vector cv; std::vector fv; public: /*! Adds a new data point \a f, with the corresponding colour \a c. The additions must be done in the order of ascending \a f. */ void add (float f, const Colour &c) { fv.push_back(f); cv.push_back(c); } /*! Sets the palette to the predefined palette \a num. */ void setPredefined(int num); /*! Returns the colour corresponding to the value \a f. The colour is determined by linear interpolation between neighbouring data points. */ Colour Get_Colour (float f) const { if (f<=fv[0]) return cv[0]; if (f>=fv[fv.size()-1]) return cv[cv.size()-1]; int i=0; while (f>fv[i]) ++i; return cv[i-1]*((fv[i]-f)/(fv[i]-fv[i-1])) + cv[i]*((f-fv[i-1])/(fv[i]-fv[i-1])); } }; class Colour8 { private: void import (const Colour &col) { using namespace std; r = uint8(max(0,min(255,int(col.r*256)))); g = uint8(max(0,min(255,int(col.g*256)))); b = uint8(max(0,min(255,int(col.b*256)))); } public: uint8 r,g,b; Colour8() {} Colour8 (uint8 R, uint8 G, uint8 B) : r(R), g(G), b(B) {} Colour8 (const Colour &col) { import (col); } const Colour8 &operator= (const Colour &col) { import (col); return *this; } bool operator== (const Colour8 &that) { return (r == that.r) && (g == that.g) && (b == that.b); } bool operator!= (const Colour8 &that) { return (r != that.r) || (g != that.g) || (b != that.b); } }; class MP_Font { public: int offset, num_chars, xpix, ypix; const char *data; }; extern const MP_Font medium_bold_font; extern const MP_Font giant_font; /*! Class for creating and storing image files. */ class LS_Image { private: MP_Font font; arr2 pixel; void write_char (int xpos, int ypos, const Colour &col, char c, int scale=1); public: /*! */ LS_Image (); /*! Creates an image object with a resolution of \a xres by \a yres. */ LS_Image (int xres, int yres); /*! */ ~LS_Image () {} /*! Fills the entire image with colour \a col. */ void fill (const Colour &col) { pixel.fill(col); } /*! Sets the font used for annotations to \a fnt. */ void set_font (const MP_Font &fnt); /*! Outputs the string \a text in colour \a col. \a xpos, \a ypos is the lower left corner; the font is scaled by \a scale. */ void annotate (int xpos, int ypos, const Colour &col, const std::string &text, int scale=1); /*! Outputs the string \a text centered at position \a xpos, \a ypos in colour \a col. The font is scaled by \a scale. */ void annotate_centered (int xpos, int ypos, const Colour &col, const std::string &text, int scale=1); /*! Sets the pixel \a i, \a j, to the colour \a col. */ void put_pixel (tsize i, tsize j, const Colour &col) { if ((i #endif #include "share_utils.h" inline bool openmp_enabled() { #ifdef _OPENMP return true; #else return false; #endif } inline int openmp_max_threads () { #ifdef _OPENMP return omp_get_max_threads(); #else return 1; #endif } inline int openmp_num_threads () { #ifdef _OPENMP return omp_get_num_threads(); #else return 1; #endif } inline int openmp_thread_num () { #ifdef _OPENMP return omp_get_thread_num(); #else return 0; #endif } /*! Calculates the range of indices between \a glo and \a ghi which must be processed by this thread and returns it in \a lo and \a hi. The indices \a ghi and \a hi are "one past the last real index", in analogy to the STL iterators. */ inline void openmp_calc_share (int64 glo, int64 ghi, int64 &lo, int64 &hi) { #ifdef _OPENMP calcShareGeneral (glo,ghi,omp_get_num_threads(),omp_get_thread_num(),lo,hi); #else lo=glo; hi=ghi; #endif } #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/announce.h0000650000175000017530000000420612255154051026623 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file announce.h * Functions for printing information at startup. * * Copyright (C) 2002-2011 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_ANNOUNCE_H #define PLANCK_ANNOUNCE_H #include /*! Prints a banner containing \a name, as well as some information about the source code and the parallelisation techniques enabled. */ void announce (const std::string &name); /*! Prints a banner containing \a name and checks if \a argc_valid is true. If not, the string \a usage is printed and the program is terminated. */ void module_startup (const std::string &name, bool argc_valid, const std::string &usage, bool verbose=true); /*! Prints a banner containing \a name and checks if \a argc==argc_expected. If not, a usage description is given and the program is terminated. */ void module_startup (const std::string &name, int argc, const char **argv, int argc_expected, const std::string &argv_expected, bool verbose=true); /*! Prints a banner containing \a name and checks if \a argc>=2. If not, a usage description is given and the program is terminated. */ void module_startup (const std::string &name, int argc, const char **argv, bool verbose=true); #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/trafos.cc0000650000175000017530000001436012255154051026453 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file trafos.cc * Celestial coordinate transformations. * * Copyright (C) 2005-2011 Max-Planck-Society * \author Martin Reinecke */ #include "trafos.h" #include "geom_utils.h" #include "lsconstants.h" using namespace std; vec3 Trafo::xcc_dp_precess (const vec3 &iv, double iepoch, double oepoch) { // Z-axis rotation by OBL_LONG: double Tm = ((oepoch+iepoch)*0.5 - 1900.) *0.01; double gp_long = degr2rad * ((oepoch-iepoch) * (50.2564+0.0222*Tm) / 3600.); double obl_long = degr2rad * (180. - (173. + (57.06+54.77*Tm) / 60.)) + gp_long*0.5; double dco = cos(obl_long), dso = sin(obl_long); vec3 ov (iv.x*dco-iv.y*dso, iv.x*dso+iv.y*dco, iv.z); // X-axis rotation by dE: double dE = degr2rad * ((oepoch-iepoch) * (0.4711-0.0007*Tm) / 3600.); double dce = cos(dE), dse = sin(dE); double temp = ov.y*dce - ov.z*dse; ov.z = ov.y*dse + ov.z*dce; ov.y = temp; // Z-axis rotation by GP_LONG - OBL_LONG: double dL = gp_long - obl_long; double dcl = cos(dL), dsl = sin(dL); temp = ov.x*dcl - ov.y*dsl; ov.y = ov.x*dsl + ov.y*dcl; ov.x = temp; return ov; } double Trafo::get_epsilon (double epoch) { double T = (epoch - 1900.) * 0.01; return degr2rad * (23.452294 - 0.0130125*T - 1.63889e-6*T*T + 5.02778e-7*T*T*T); } /*! Routine to convert from ecliptic coordinates to equatorial (celestial) coordinates at the given epoch. Adapted from the COBLIB routine by Dr. E. Wright. */ vec3 Trafo::xcc_dp_e_to_q (const vec3 &iv, double epoch) { double epsilon=get_epsilon(epoch); double dc = cos(epsilon), ds = sin(epsilon); return vec3 (iv.x, dc*iv.y-ds*iv.z, dc*iv.z+ds*iv.y); } vec3 Trafo::xcc_dp_q_to_e (const vec3 &iv, double epoch) { double epsilon=-get_epsilon(epoch); double dc = cos(epsilon), ds = sin(epsilon); return vec3 (iv.x, dc*iv.y-ds*iv.z, dc*iv.z+ds*iv.y); } /*! Routine to convert galactic coordinates to ecliptic (celestial) coordinates at the given epoch. First the conversion to ecliptic 2000 is done, then if necessary the results are precessed. */ vec3 Trafo::xcc_dp_g_to_e (const vec3 &iv, double epoch) { static const rotmatrix T (-0.054882486, 0.494116468, -0.867661702, -0.993821033, -0.110993846, -0.000346354, -0.096476249, 0.862281440, 0.497154957); vec3 hv=T.Transform(iv); if (!approx(epoch,2000.)) hv=xcc_dp_precess(hv,2000.,epoch); return hv; } /*! Routine to convert ecliptic (celestial) coordinates at the given epoch to galactic coordinates. The ecliptic coordinates are first precessed to 2000.0, then converted. */ vec3 Trafo::xcc_dp_e_to_g (const vec3 &iv, double epoch) { static const rotmatrix T (-0.054882486, -0.993821033, -0.096476249, 0.494116468, -0.110993846, 0.862281440, -0.867661702, -0.000346354, 0.497154957); vec3 hv=iv; if (!approx(epoch,2000.)) hv=xcc_dp_precess(hv,epoch,2000.); return T.Transform(hv); } /*! Function to convert between standard coordinate systems, including precession. */ vec3 Trafo::xcc_v_convert(const vec3 &iv, double iepoch, double oepoch, coordsys isys,coordsys osys) { vec3 xv; if (isys == Ecliptic) xv=iv; else if (isys == Equatorial) xv = xcc_dp_q_to_e(iv,iepoch); else if (isys == Galactic) xv = xcc_dp_g_to_e(iv,iepoch); else planck_fail("Unsupported input coordinate system"); vec3 yv = approx(iepoch,oepoch) ? xv : xcc_dp_precess(xv,iepoch,oepoch); vec3 ov; if (osys == Ecliptic) ov = yv; else if (osys == Equatorial) ov = xcc_dp_e_to_q(yv,oepoch); else if (osys == Galactic) ov = xcc_dp_e_to_g(yv,oepoch); else planck_fail("Unsupported output coordinate system"); return ov; } void Trafo::coordsys2matrix (double iepoch, double oepoch, coordsys isys, coordsys osys, rotmatrix &matrix) { vec3 v1p = xcc_v_convert(vec3(1,0,0),iepoch,oepoch,isys,osys), v2p = xcc_v_convert(vec3(0,1,0),iepoch,oepoch,isys,osys), v3p = xcc_v_convert(vec3(0,0,1),iepoch,oepoch,isys,osys); v1p.Normalize(); v2p.Normalize(); v3p.Normalize(); matrix=rotmatrix(v1p,v2p,v3p); } Trafo::Trafo (double iepoch, double oepoch, coordsys isys, coordsys osys) { coordsys2matrix (iepoch, oepoch, isys, osys, mat); } pointing Trafo::operator() (const pointing &ptg) const { return pointing(operator()(vec3(ptg))); } void Trafo::rotatefull (const pointing &ptg, pointing &newptg, double &delta_psi) const { vec3 vec (ptg); vec3 east (-vec.y,vec.x,0.); vec3 newvec = operator()(vec); vec3 neweast = operator()(east); delta_psi = orientation(newvec,neweast)+halfpi; newptg = newvec; } void Trafo::rotatefull (pointing &ptg, double &psi) const { vec3 vec (ptg); vec3 east (-vec.y,vec.x,0.); vec3 newvec = operator()(vec); vec3 neweast = operator()(east); psi += orientation(newvec,neweast)+halfpi; ptg = newvec; } void Trafo::rotatefull (const vec3 &vec, vec3 &newvec, double &delta_psi) const { vec3 east (-vec.y,vec.x,0.); newvec = operator()(vec); vec3 neweast = operator()(east); delta_psi = orientation(newvec,neweast)+halfpi; } void Trafo::rotatefull (vec3 &vec, double &psi) const { vec3 east (-vec.y,vec.x,0.); vec3 newvec = operator()(vec); vec3 neweast = operator()(east); psi += orientation(newvec,neweast)+halfpi; vec = newvec; } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/safe_cast.h0000650000175000017530000000530512255154051026746 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file safe_cast.h * Numerical cast operator with additional checks that the value is preserved. * * Copyright (C) 2009 Max-Planck-Society * Author: Martin Reinecke */ #ifndef PLANCK_SAFE_CAST_H #define PLANCK_SAFE_CAST_H #include #include "error_handling.h" template struct safe_cast_helper__ {}; template struct safe_cast_helper__ { static T1 cast (const T2 &arg) { T1 res = T1(arg); planck_assert(T2(res)==arg, "safe_cast: value changed during cast"); return res; } }; template struct safe_cast_helper__ { static T1 cast (const T2 &arg) { T1 res = T1(arg); planck_assert(T2(res)==arg, "safe_cast: value changed during cast"); return res; } }; template struct safe_cast_helper__ { static T1 cast (const T2 &arg) { T1 res = T1(arg); planck_assert((res>=0) && (T2(res)==arg), "safe_cast: value changed during cast"); return res; } }; template struct safe_cast_helper__ { static T1 cast (const T2 &arg) { T1 res = T1(arg); planck_assert((arg>=0) && (T2(res)==arg), "safe_cast: value changed during cast"); return res; } }; /*! Tries to cast \a arg from its type to a variable of type \c T1. If this conversion leads to a change of the actual value (e.g. due to overflow or truncation), an exception is thrown. */ template inline T1 safe_cast(const T2 &arg) { return safe_cast_helper__::is_signed, std::numeric_limits::is_signed>::cast(arg); } #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/trafos.h0000650000175000017530000000626412255154051026321 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file trafos.h * Celestial coordinate transformations. * * Copyright (C) 2005-2011 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_TRAFOS_H #define PLANCK_TRAFOS_H #include "vec3.h" #include "pointing.h" #include "rotmatrix.h" enum coordsys { Ecliptic, Equatorial, Galactic }; /*! Class for celestial coordinate transformations. */ class Trafo { private: rotmatrix mat; static vec3 xcc_dp_precess (const vec3 &iv, double iepoch, double oepoch); static double get_epsilon (double epoch); static vec3 xcc_dp_e_to_q (const vec3 &iv, double epoch); static vec3 xcc_dp_q_to_e (const vec3 &iv, double epoch); static vec3 xcc_dp_g_to_e (const vec3 &iv, double epoch); static vec3 xcc_dp_e_to_g (const vec3 &iv, double epoch); static vec3 xcc_v_convert(const vec3 &iv, double iepoch, double oepoch, coordsys isys,coordsys osys); static void coordsys2matrix (double iepoch, double oepoch, coordsys isys, coordsys osys, rotmatrix &matrix); public: /*! Creates a \a Trafo for transformation from \a iepoch and \a isys to \a oepoch and \a osys. */ Trafo (double iepoch, double oepoch, coordsys isys, coordsys osys); /*! Transforms the vector \a vec and returns the result. */ vec3 operator() (const vec3 &vec) const { return mat.Transform(vec); } /*! Transforms the pointing \a ptg and returns the result. */ pointing operator() (const pointing &ptg) const; /*! Transforms the pointing \a ptg and returns it in \a newptg. On exit, \a delta_psi holds the change in orientation. */ void rotatefull (const pointing &ptg, pointing &newptg, double &delta_psi) const; /*! Transforms the pointing \a ptg and adjusts \a psi accordingly. */ void rotatefull (pointing &ptg, double &psi) const; /*! Transforms the vector \a vec and returns it in \a newvec. On exit, \a delta_psi holds the change in orientation. */ void rotatefull (const vec3 &vec, vec3 &newvec, double &delta_psi) const; /*! Transforms the vector \a vec and adjusts \a psi accordingly. */ void rotatefull (vec3 &vec, double &psi) const; /*! Returns the internally used rotation matrix. */ const rotmatrix &Matrix() const { return mat; } }; #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/cxxsupport.dox0000650000175000017530000000025212255154051027614 0ustar zoncaplanck00000000000000/*! \mainpage LevelS C++ support library documentation Please refer to the Modules page for an overview of the supplied functionality. */ healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/rotmatrix.h0000650000175000017530000001127412255154051027051 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file rotmatrix.h * Class for rotation transforms in 3D space * * Copyright (C) 2003-2011 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_ROTMATRIX_H #define PLANCK_ROTMATRIX_H #include #include "vec3.h" /*! \defgroup rotmatrixgroup Rotation matrices */ /*! \{ */ /*! Class for rotation transforms in 3D space */ class rotmatrix { public: double entry[3][3]; rotmatrix () {} /*! Constructs a rotation matrix from its nine entries */ rotmatrix (double a00, double a01, double a02, double a10, double a11, double a12, double a20, double a21, double a22) { entry[0][0]=a00; entry[0][1]=a01; entry[0][2]=a02; entry[1][0]=a10; entry[1][1]=a11; entry[1][2]=a12; entry[2][0]=a20; entry[2][1]=a21; entry[2][2]=a22; } /*! Constructs a rotation matrix so that \a a is the first column, \a b is the second column and \a c is the third column. \note The vectors \a a, \a b and \a c must form an orthonormal system! */ rotmatrix (const vec3 &a, const vec3 &b, const vec3 &c); /*! Sets the matrix to the identity matrix. */ void SetToIdentity (); /*! Sets all matrix elements to zero. */ void SetToZero (); /*! Transposes the matrix. */ void Transpose (); /*! Extracts a unit-length rotation axis \a axis and a rotation angle \a angle (in radian) from the matrix. */ void toAxisAngle (vec3 &axis, double &angle) const; /*! Constructs a matrix which causes a rotation by \a angle radians around \a axis. \a axis must have unit length. */ void Make_Axis_Rotation_Transform (const vec3 &axis, double angle); /*! Creates a rotation matrix \a A, which performs the following operations on a vector \a v, when \a Av is calculated: -# rotate \a v around the z-axis by \a gamma, -# rotate \a v' around the y-axis by \a beta, -# rotate \a v'' around the z-axis by \a alpha. \note \a alpha, \a beta and \a gamma are given in radians, the rotations are right handed. \note This transformation rotates the \e vectors, not the coordinate axes! */ void Make_CPAC_Euler_Matrix (double alpha, double beta, double gamma); /*! Extracts the Euler angles \a alpha, \a beta and \a gamma from the matrix. For their definition see Make_CPAC_Euler_Matrix(). \note In case of ambiguity \a alpha will be 0. */ void Extract_CPAC_Euler_Angles (double &alpha, double &beta, double &gamma) const; /*! Returns the vector \a vec, transformed by the matrix. */ vec3 Transform (const vec3 &vec) const { return vec3 (vec.x*entry[0][0] + vec.y*entry[0][1] + vec.z*entry[0][2], vec.x*entry[1][0] + vec.y*entry[1][1] + vec.z*entry[1][2], vec.x*entry[2][0] + vec.y*entry[2][1] + vec.z*entry[2][2]); } /*! Returns the vector \a vec, transformed by the matrix, in \a vec2. */ void Transform (const vec3 &vec, vec3 &vec2) const { vec2.x = vec.x*entry[0][0] + vec.y*entry[0][1] + vec.z*entry[0][2]; vec2.y = vec.x*entry[1][0] + vec.y*entry[1][1] + vec.z*entry[1][2]; vec2.z = vec.x*entry[2][0] + vec.y*entry[2][1] + vec.z*entry[2][2]; } }; /*! Returns \a a * \a b. \relates rotmatrix */ rotmatrix operator* (const rotmatrix &a, const rotmatrix &b); /*! Returns \a a * \a b in \a res. \relates rotmatrix */ void matmult (const rotmatrix &a, const rotmatrix &b, rotmatrix &res); /*! Returns \a a^T * \a b in \a res. \relates rotmatrix */ void TransposeTimes (const rotmatrix &a, const rotmatrix &b, rotmatrix &res); /*! Writes \a mat to \a os. \relates rotmatrix */ std::ostream &operator<< (std::ostream &os, const rotmatrix &mat); /*! \} */ #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/rotmatrix.cc0000650000175000017530000001305412255154051027205 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Class for rotation transforms in 3D space * * Copyright (C) 2003-2011 Max-Planck-Society * Author: Martin Reinecke */ #include #include "rotmatrix.h" #include "lsconstants.h" using namespace std; rotmatrix::rotmatrix (const vec3 &a, const vec3 &b, const vec3 &c) { entry[0][0]=a.x; entry[0][1]=b.x; entry[0][2]=c.x; entry[1][0]=a.y; entry[1][1]=b.y; entry[1][2]=c.y; entry[2][0]=a.z; entry[2][1]=b.z; entry[2][2]=c.z; } void rotmatrix::SetToIdentity () { entry[0][0] = entry[1][1] = entry[2][2] = 1.; entry[0][1] = entry[1][0] = entry[0][2] = entry[2][0] = entry[1][2] = entry[2][1] = 0.; } void rotmatrix::SetToZero () { for (int m=0; m<3; ++m) entry[m][0] = entry[m][1] = entry[m][2] = 0; } void rotmatrix::Transpose () { swap(entry[0][1], entry[1][0]); swap(entry[0][2], entry[2][0]); swap(entry[1][2], entry[2][1]); } void rotmatrix::toAxisAngle (vec3 &axis, double &angle) const { double c2 = entry[0][0] + entry[1][1] + entry[2][2] - 1; axis.x = entry[2][1] - entry[1][2]; axis.y = entry[0][2] - entry[2][0]; axis.z = entry[1][0] - entry[0][1]; double s2 = axis.Length(); if (s2>0) { angle = atan2(s2,c2); axis *= 1/s2; return; } if (c2>=2) // angle is 0 { axis = vec3(1,0,0); angle = 0; return; } angle = pi; int choice = 0; // assume entry[0][0] is the largest if ((entry[1][1]>entry[0][0]) && (entry[1][1]>entry[2][2])) choice=1; if ((entry[2][2]>entry[0][0]) && (entry[2][2]>entry[1][1])) choice=2; if (choice==0) { axis.x = 0.5*sqrt(entry[0][0]-entry[1][1]-entry[2][2]+1); double half_inv = 0.5/axis.x; axis.y = half_inv*entry[0][1]; axis.z = half_inv*entry[0][2]; return; } if (choice==1) { axis.y = 0.5*sqrt(entry[1][1]-entry[0][0]-entry[2][2]+1); double half_inv = 0.5/axis.y; axis.x = half_inv*entry[0][1]; axis.z = half_inv*entry[1][2]; return; } axis.z = 0.5*sqrt(entry[2][2]-entry[0][0]-entry[1][1]+1); double half_inv = 0.5/axis.z; axis.x = half_inv*entry[0][2]; axis.y = half_inv*entry[1][2]; } void rotmatrix::Make_Axis_Rotation_Transform (const vec3 &axis, double angle) { double sa=sin(angle), ca=cos(angle); double ica=1-ca; entry[0][0] = axis.x*axis.x*ica + ca; entry[1][1] = axis.y*axis.y*ica + ca; entry[2][2] = axis.z*axis.z*ica + ca; double t1 = axis.x*axis.y*ica, t2 = axis.z*sa; entry[1][0] = t1 + t2; entry[0][1] = t1 - t2; t1 = axis.x*axis.z*ica; t2 = axis.y*sa; entry[2][0] = t1 - t2; entry[0][2] = t1 + t2; t1 = axis.y*axis.z*ica; t2 = axis.x*sa; entry[1][2] = t1 - t2; entry[2][1] = t1 + t2; } void rotmatrix::Make_CPAC_Euler_Matrix (double alpha, double beta, double gamma) { double ca=cos(alpha), cb=cos(beta), cg=cos(gamma); double sa=sin(alpha), sb=sin(beta), sg=sin(gamma); entry[0][0]= ca*cb*cg-sa*sg; entry[0][1]=-ca*cb*sg-sa*cg; entry[0][2]= ca*sb; entry[1][0]= sa*cb*cg+ca*sg; entry[1][1]=-sa*cb*sg+ca*cg; entry[1][2]= sa*sb; entry[2][0]=-sb*cg; entry[2][1]= sb*sg; entry[2][2]= cb; } void rotmatrix::Extract_CPAC_Euler_Angles (double &alpha, double &beta, double &gamma) const { double cb = entry[2][2]; double sb = sqrt(entry[0][2]*entry[0][2] + entry[1][2]*entry[1][2]); beta=atan2(sb,cb); if (abs(sb)<=1e-6) { alpha=0; if (cb>0) gamma=atan2(entry[1][0],entry[0][0]); else gamma=atan2(entry[0][1],-entry[0][0]); } else { alpha=atan2(entry[1][2],entry[0][2]); gamma=atan2(entry[2][1],-entry[2][0]); } } rotmatrix operator* (const rotmatrix &a, const rotmatrix &b) { rotmatrix res; for (int i=0; i<3; ++i) for (int j=0; j<3; ++j) res.entry[i][j] = a.entry[i][0] * b.entry[0][j] + a.entry[i][1] * b.entry[1][j] + a.entry[i][2] * b.entry[2][j]; return res; } void matmult (const rotmatrix &a, const rotmatrix &b, rotmatrix &res) { for (int i=0; i<3; ++i) for (int j=0; j<3; ++j) res.entry[i][j] = a.entry[i][0] * b.entry[0][j] + a.entry[i][1] * b.entry[1][j] + a.entry[i][2] * b.entry[2][j]; } void TransposeTimes (const rotmatrix &a, const rotmatrix &b, rotmatrix &res) { for (int i=0; i<3; ++i) for (int j=0; j<3; ++j) res.entry[i][j] = a.entry[0][i] * b.entry[0][j] + a.entry[1][i] * b.entry[1][j] + a.entry[2][i] * b.entry[2][j]; } ostream &operator<< (ostream &os, const rotmatrix &mat) { for (int i=0;i<3;++i) os << mat.entry[i][0] << ' ' << mat.entry[i][1] << ' ' << mat.entry[i][2] << endl; return os; } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/geom_utils.cc0000650000175000017530000000440412255154051027322 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Copyright (C) 2011 Max-Planck-Society * \author Martin Reinecke */ #include "geom_utils.h" #include "arr.h" using namespace std; namespace { void get_circle (const arr &point, tsize q1, tsize q2, vec3 ¢er, double &cosrad) { center = (point[q1]+point[q2]).Norm(); cosrad = dotprod(point[q1],center); for (tsize i=0; i &point, tsize q, vec3 ¢er, double &cosrad) { center = (point[0]+point[q]).Norm(); cosrad = dotprod(point[0],center); for (tsize i=1; i &point, vec3 ¢er, double &cosrad) { tsize np=point.size(); planck_assert(np>=3,"too few points"); center = (point[0]+point[1]).Norm(); cosrad = dotprod(point[0],center); for (tsize i=2; i class safe_ptr { private: T *p; bool set; // forbid copying of safe_ptrs, at least until we know how to do it safe_ptr (const safe_ptr &) {} safe_ptr &operator= (const safe_ptr &) { return *this; } public: safe_ptr() : p(0), set(false) {} safe_ptr (T *p2) : p(p2), set(true) {} ~safe_ptr() { delete p; } void operator= (T *p2) { planck_assert (!set, "safe_ptr: already set"); set = true; p=p2; } void reset() { delete p; p=0; set=false; } operator T*() { return p; } operator const T*() const { return p; } T *operator->() { return p; } const T *operator->() const { return p; } }; #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/paramfile.h0000650000175000017530000001006212255154051026752 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file paramfile.h * Class for parsing parameter files * * Copyright (C) 2003-2012 Max-Planck-Society * Authors: Martin Reinecke */ #ifndef PLANCK_PARAMFILE_H #define PLANCK_PARAMFILE_H #include #include #include #include "datatypes.h" #include "string_utils.h" /*! Class for storing and querying key/value pairs. The name is historical; the parameters can actually be obtained from othersources as well (e.g. the command line). */ class paramfile { private: typedef std::map params_type; params_type params; mutable std::set read_params; bool verbose; std::string get_valstr(const std::string &key) const; bool param_unread (const std::string &key) const; void findhelper (const std::string &key, const std::string &value, NDT type, bool deflt) const; void setParamString (const std::string &key, const std::string &value); public: paramfile () {} /*! Constructs a paramfile object from the contents of \a filename. If \a verbose_==true, diagnostic output is generated when calling methods on this object, otherwise not. */ paramfile (const std::string &filename, bool verbose_=true); /*! Constructs a paramfile object from the contents of \a par. If \a verbose_==true, diagnostic output is generated when calling methods on this object, otherwise not. */ paramfile (const params_type &par, bool verbose_=true); ~paramfile(); /*! Allows adjusting the verbosity. */ void setVerbosity (bool verbose_) { verbose = verbose_; } /*! Returns the verbosity setting of the object. */ bool getVerbosity () const { return verbose; } /*! Returns \c true, if a paremeter called \a key is stored in the object, else \c false. */ bool param_present(const std::string &key) const; /*! Returns the value stored for the parameter name \a key, after converting it to the requested type. If \a key is not present, an exception is thrown. */ template T find (const std::string &key) const; /*! Returns the value stored for the parameter name \a key, after converting it to the requested type. If \a key is not present, \a deflt is returned instead, and is also entered into the parameter set. */ template T find (const std::string &key, const T &deflt); /*! Returns the entire set of currently stored parameters. */ const params_type &getParams() const { return params; } /*! Sets the parameter with the name \a key to \a value. */ template void setParam (const std::string &key, const T &value) { setParamString(key,dataToString(value)); } }; /*! Tries to build a \a paramfile object from the contents of a command line. If \a argc==2 and \a argv[1] does not contain the character "=", the function tries to input parameters from the file \a argv[1]. Otherwise the function interprets each command line argument as a "key=value" statement. */ paramfile getParamsFromCmdline (int argc, const char **argv, bool verbose=true); #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/lsconstants.h0000654000175000017530000000564612264023644027410 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file lsconstants.h * Mathematical, physical and technical constants for LevelS. */ #ifndef PLANCK_CONSTANTS_H #define PLANCK_CONSTANTS_H /*! \defgroup mathconstgroup Mathematical constants */ /*! \{ */ const double pi=3.141592653589793238462643383279502884197; const double twopi=6.283185307179586476925286766559005768394; const double inv_twopi=1.0/twopi; const double fourpi=12.56637061435917295385057353311801153679; const double halfpi=1.570796326794896619231321691639751442099; const double inv_halfpi=0.6366197723675813430755350534900574; const double inv_sqrt4pi = 0.2820947917738781434740397257803862929220; const double ln2 = 0.6931471805599453094172321214581766; const double inv_ln2 = 1.4426950408889634073599246810018921; const double ln10 = 2.3025850929940456840179914546843642; const double onethird=1.0/3.0; const double twothird=2.0/3.0; const double fourthird=4.0/3.0; const double degr2rad=pi/180.0; const double arcmin2rad=degr2rad/60; const double rad2degr=180.0/pi; //! Ratio between FWHM and sigma of a Gauss curve (\f$\sqrt{8\ln2}\f$). const double sigma2fwhm=2.3548200450309493; // sqrt(8*log(2.)) const double fwhm2sigma=1/sigma2fwhm; /*! \} */ /*! \defgroup physconstgroup Physical constants */ /*! \{ */ const double Jansky2SI=1.0e-26; const double SI2Jansky=1.0e+26; //! Light speed in m/s (CODATA 2006) const double speedOfLight=2.99792458e8; //! Boltzmann's constant in J/K (CODATA 2006) const double kBoltzmann=1.3806504e-23; //! Stefan-Boltzmann constant in W/m^2/K^4 (CODATA 2006) const double sigmaStefanBoltzmann=5.6704e-8; //! Planck's constant in J s (CODATA 2006) const double hPlanck=6.62606896e-34; //! Astronomical unit in m const double astronomicalUnit=1.49597870691e11; //! Solar constant in W/m^2 const double solarConstant=1368.0; //! Average CMB temperature in K (Fixsen, ApJ 709 (2009), arXiv:0911.1955) const double tcmb = 2.72548; //! offset (in seconds) between Jan 1, 1958 and Jan 1, 1970 const double sec_58_70 = 378691200.; /*! \} */ #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/error_handling.cc0000650000175000017530000000334312255154051030151 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Utilities for error reporting * * Copyright (C) 2003-2011 Max-Planck-Society * Author: Martin Reinecke */ #include "error_handling.h" using namespace std; PlanckError::PlanckError(const string &message) : msg (message) {} PlanckError::PlanckError(const char *message) : msg (message) {} //virtual PlanckError::~PlanckError() {} void planck_failure__(const char *file, int line, const char *func, const string &msg) { cerr << "Error encountered at " << file << ", line " << line << endl; if (func) cerr << "(function " << func << ")" << endl; if (msg!="") cerr << endl << msg << endl; cerr << endl; } void planck_failure__(const char *file, int line, const char *func, const char *msg) { planck_failure__ (file,line,func,string(msg)); } void killjob__() { throw; } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/planck.make0000650000175000017530000000111212255154051026744 0ustar zoncaplanck00000000000000PKG:=cxxsupport SD:=$(SRCROOT)/$(PKG) OD:=$(BLDROOT)/$(PKG) FULL_INCLUDE+= -I$(SD) HDR_$(PKG):=$(SD)/*.h LIB_$(PKG):=$(LIBDIR)/libcxxsupport.a SUPPORT_OBJ:= error_handling.o string_utils.o paramfile.o walltimer.o ls_image.o MATH_OBJ:= rotmatrix.o trafos.o wigner.o pointing.o geom_utils.o FITS_OBJ:= fitshandle.o OBJ:=$(SUPPORT_OBJ) $(MATH_OBJ) $(FITS_OBJ) announce.o OBJ:=$(OBJ:%=$(OD)/%) ODEP:=$(HDR_$(PKG)) $(HDR_libfftpack) $(HDR_c_utils) $(OBJ): $(ODEP) | $(OD)_mkdir $(LIB_$(PKG)): $(OBJ) $(OD)/ls_image.o: $(SD)/font_data.inc all_hdr+=$(HDR_$(PKG)) all_lib+=$(LIB_$(PKG)) healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/bstream.h0000650000175000017530000001654612255154051026464 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file bstream.h * Classes for binary I/O with streams * * Copyright (C) 2010 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_BSTREAM_H #define PLANCK_BSTREAM_H #include #include #include #include "datatypes.h" /*! An object of this class can be cast to a \a bool, which indicates whether the computer architecture is big-endian (true) or little-endian (false). */ class EndianTest__ { private: bool big_end; public: EndianTest__() { union { uint16 i16; uint8 i8; } tmp; tmp.i16 = 1; big_end = (tmp.i8==0); } operator bool() const { return big_end; } }; const EndianTest__ big_endian; template inline void byteswap_helper__ (char *); template<> inline void byteswap_helper__<1> (char *) {} template<> inline void byteswap_helper__<2> (char *val) { using namespace std; swap (val[0],val[1]); } template<> inline void byteswap_helper__<4> (char *val) { using namespace std; swap (val[0],val[3]); swap (val[1],val[2]); } template<> inline void byteswap_helper__<8> (char *val) { using namespace std; swap (val[0],val[7]); swap (val[1],val[6]); swap (val[2],val[5]); swap (val[3],val[4]); } /*! Performs an endianness conversion on \a val. \note \a T must be a primitive data type! */ template inline void byteswap (T &val) { byteswap_helper__ (reinterpret_cast (&val)); } const bool file_is_lsb=big_endian, file_is_msb=!big_endian, file_is_natural=false; /*! Class for writing binary data to a stream. */ class bostream { private: std::ostream &s; bool doswap; public: /*! Creates a new object which is attached to \a s_ and performs endianness conversion if \a doswap_==true. */ bostream (std::ostream &s_, bool doswap_=false) : s(s_), doswap(doswap_) {} /*! Writes a binary representation of \a num objects of type \a T (stored in \a data) to the attached stream. Endianness conversion is performed if requested in the constructor. \note \a T must be a primitive data type! */ template bostream &put (const T *data, size_t num) { if ((sizeof(T)>1) && doswap) for (size_t m=0; m (&tmp), sizeof(T)); } else s.write (reinterpret_cast (data), num*sizeof(T)); return *this; } /*! Writes a binary representation of \a data to the attached stream. Endianness conversion is performed if requested in the constructor. \note \a T must be a primitive data type! */ template bostream &operator<< (const T &data) { put(&data,1); return *this; } bool getSwap() const { return doswap; } void setSwap(bool newswap) { doswap=newswap; } void flipSwap() { doswap=!doswap; } }; /*! Class for reading binary data from a stream. */ class bistream { private: std::istream &s; bool doswap; public: /*! Creates a new object which is attached to \a s_ and performs endianness conversion if \a doswap_==true. */ bistream (std::istream &s_, bool doswap_=false) : s(s_), doswap(doswap_) {} /*! Reads a binary representation of \a num objects of type \a T from the attached stream and stores them in \a data. Endianness conversion is performed if requested in the constructor. \note \a T must be a primitive data type! */ template bistream &get (T *data, size_t num) { s.read (reinterpret_cast (data), num*sizeof(T)); if ((sizeof(T)>1) && doswap) for (size_t m=0; m bistream &operator>> (T &data) { get (&data,1); return *this; } bool getSwap() const { return doswap; } void setSwap(bool newswap) { doswap=newswap; } void flipSwap() { doswap=!doswap; } }; class bofstream: public std::ofstream { private: bool doswap; public: /*! */ bofstream (const char *fname, bool doswap_) : std::ofstream(fname,std::ios::binary), doswap(doswap_) {} template bofstream &operator<< (const T &data) { if (doswap) { T tmp = data; byteswap (tmp); write (reinterpret_cast (&tmp), sizeof(T)); } else write (reinterpret_cast (&data), sizeof(T)); return *this; } template bofstream &put (const T *data, size_t num) { if (doswap) for (size_t m=0; m (&tmp), sizeof(T)); } else write (reinterpret_cast (data), num*sizeof(T)); return *this; } bool getSwap() const { return doswap; } void setSwap(bool newswap) { doswap=newswap; } void flipSwap() { doswap=!doswap; } }; class bifstream: public std::ifstream { private: bool doswap; public: /*! */ bifstream () : doswap(false) {} bifstream (const char *fname, bool doswap_) : std::ifstream(fname,std::ios::binary), doswap(doswap_) {} void open (const char *fname, bool doswap_) { doswap=doswap_; std::ifstream::open(fname,std::ios::binary); } template bifstream &operator>> (T &data) { read (reinterpret_cast (&data), sizeof(T)); if (doswap) byteswap (data); return *this; } template bifstream &get (T *data, size_t num) { read (reinterpret_cast (data), num*sizeof(T)); if (doswap) for (size_t m=0; m #include #include #include "alloc_utils.h" #include "datatypes.h" #include "math_utils.h" /*! \defgroup arraygroup Array classes */ /*! \{ */ /*! View of a 1D array */ template class arr_ref { protected: tsize s; T *d; public: /*! Constructs an \a arr_ref of size \a s_, starting at \a d_. */ arr_ref(T *d_, tsize s_) : s(s_),d(d_) {} /*! Returns the current array size. */ tsize size() const { return s; } /*! Writes \a val into every element of the array. */ void fill (const T &val) { for (tsize m=0; m T &operator[] (T2 n) {return d[n];} /*! Returns a constant reference to element \a n */ template const T &operator[] (T2 n) const {return d[n];} /*! Returns a pointer to the first array element, or NULL if the array is zero-sized. */ T *begin() { return d; } /*! Returns a pointer to the one-past-last array element, or NULL if the array is zero-sized. */ T *end() { return d+s; } /*! Returns a constant pointer to the first array element, or NULL if the array is zero-sized. */ const T *begin() const { return d; } /*! Returns a constant pointer to the one-past-last array element, or NULL if the array is zero-sized. */ const T *end() const { return d+s; } /*! Copies all array elements to \a ptr. */ template void copyToPtr (T *ptr) const { for (tsize m=0; m void sort(Comp comp) { std::sort (d,d+s,comp); } /*! Helper function for linear interpolation (or extrapolation). \a idx and \a val are computed such that \a val=d[idx]+frac*(d[idx+1]-d[idx]). If \a vald[s-1], frac will be larger than 1. In all other cases \a 0<=frac<=1. The array must be ordered in ascending order; no two values may be equal. */ void interpol_helper (const T &val, tsize &idx, double &frac) const { ::interpol_helper (d, d+s, val, idx, frac); } /*! Helper function for linear interpolation (or extrapolation). \a idx and \a val are computed such that \a val=d[idx]+frac*(d[idx+1]-d[idx]). If \a comp(val,d[0])==true, \a frac will be negative, if \a comp(val,d[s-1])==false, frac will be larger than 1. In all other cases \a 0<=frac<=1. The array must be ordered such that \a comp(d[i],d[j])==true for \a i void interpol_helper (const T &val, Comp comp, tsize &idx, double &frac) const { ::interpol_helper (d, d+s, val, comp, idx, frac); } /*! Returns the minimum and maximum entry in \a minv and \a maxv, respectively. Throws an exception if the array is zero-sized. */ void minmax (T &minv, T &maxv) const { planck_assert(s>0,"trying to find min and max of a zero-sized array"); minv=maxv=d[0]; for (tsize m=1; mmaxv) maxv=d[m]; } } /*! Returns \a true, if \a val is found in the array, else \a false. */ bool contains (const T &val) const { for (tsize m=0; m class fix_arr { private: T d[sz]; public: /*! Returns the size of the array. */ tsize size() const { return sz; } /*! Returns a reference to element \a n */ template T &operator[] (T2 n) {return d[n];} /*! Returns a constant reference to element \a n */ template const T &operator[] (T2 n) const {return d[n];} }; /*! One-dimensional array type, with selectable storage management. */ template class arrT: public arr_ref { private: storageManager stm; bool own; void reset() { this->d=0; this->s=0; own=true; } public: /*! Creates a zero-sized array. */ arrT() : arr_ref(0,0), own(true) {} /*! Creates an array with \a sz entries. */ explicit arrT(tsize sz) : arr_ref(stm.alloc(sz),sz), own(true) {} /*! Creates an array with \a sz entries, and initializes them with \a inival. */ arrT(tsize sz, const T &inival) : arr_ref(stm.alloc(sz),sz), own(true) { this->fill(inival); } /*! Creates an array with \a sz entries, which uses the memory pointed to by \a ptr. \note \a ptr will not be deallocated by the destructor. \warning Only use this if you REALLY know what you are doing. In particular, this is only safely usable if
    • \a T is a POD type
    • \a ptr survives during the lifetime of the array object
    • \a ptr is not subject to garbage collection
    Other restrictions may apply. You have been warned. */ arrT (T *ptr, tsize sz): arr_ref(ptr,sz), own(false) {} /*! Creates an array which is a copy of \a orig. The data in \a orig is duplicated. */ arrT (const arrT &orig): arr_ref(stm.alloc(orig.s),orig.s), own(true) { for (tsize m=0; ms; ++m) this->d[m] = orig.d[m]; } /*! Frees the memory allocated by the object. */ ~arrT() { if (own) stm.dealloc(this->d); } /*! Allocates space for \a sz elements. The content of the array is undefined on exit. \a sz can be 0. If \a sz is the same as the current size, no reallocation is performed. */ void alloc (tsize sz) { if (sz==this->s) return; if (own) stm.dealloc(this->d); this->s = sz; this->d = stm.alloc(sz); own = true; } /*! Allocates space for \a sz elements. If \a sz is the same as the current size, no reallocation is performed. All elements are set to \a inival. */ void allocAndFill (tsize sz, const T &inival) { alloc(sz); this->fill(inival); } /*! Deallocates the memory held by the array, and sets the array size to 0. */ void dealloc() {if (own) stm.dealloc(this->d); reset();} /*! Resizes the array to hold \a sz elements. The existing content of the array is copied over to the new array to the extent possible. \a sz can be 0. If \a sz is the same as the current size, no reallocation is performed. */ void resize (tsize sz) { using namespace std; if (sz==this->s) return; T *tmp = stm.alloc(sz); for (tsize m=0; ms); ++m) tmp[m]=this->d[m]; if (own) stm.dealloc(this->d); this->s = sz; this->d = tmp; own = true; } /*! Changes the array to be a copy of \a orig. */ arrT &operator= (const arrT &orig) { if (this==&orig) return *this; alloc (orig.s); for (tsize m=0; ms; ++m) this->d[m] = orig.d[m]; return *this; } /*! Changes the array to be a copy of the std::vector \a orig. */ template void copyFrom (const std::vector &orig) { alloc (orig.size()); for (tsize m=0; ms; ++m) this->d[m] = orig[m]; } /*! Changes the std::vector \a vec to be a copy of the object. */ template void copyTo (std::vector &vec) const { vec.clear(); vec.reserve(this->s); for (tsize m=0; ms; ++m) vec.push_back(this->d[m]); } /*! Reserves space for \a sz elements, then copies \a sz elements from \a ptr into the array. */ template void copyFromPtr (const T2 *ptr, tsize sz) { alloc(sz); for (tsize m=0; ms; ++m) this->d[m]=ptr[m]; } /*! Assigns the contents and size of \a other to the array. \note On exit, \a other is zero-sized! */ void transfer (arrT &other) { if (own) stm.dealloc(this->d); this->d=other.d; this->s=other.s; own=other.own; other.reset(); } /*! Swaps contents and size with \a other. */ void swap (arrT &other) { std::swap(this->d,other.d); std::swap(this->s,other.s); std::swap(own,other.own); } }; /*! One-dimensional array type. */ template class arr: public arrT > { public: /*! Creates a zero-sized array. */ arr() : arrT >() {} /*! Creates an array with \a sz entries. */ explicit arr(tsize sz) : arrT >(sz) {} /*! Creates an array with \a sz entries, and initializes them with \a inival. */ arr(tsize sz, const T &inival) : arrT >(sz,inival) {} /*! Creates an array with \a sz entries, which uses the memory pointed to by \a ptr. \note \a ptr will not be deallocated by the destructor. \warning Only use this if you REALLY know what you are doing. In particular, this is only safely usable if
    • \a T is a POD type
    • \a ptr survives during the lifetime of the array object
    • \a ptr is not subject to garbage collection
    Other restrictions may apply. You have been warned. */ arr (T *ptr, tsize sz): arrT >(ptr,sz) {} /*! Creates an array which is a copy of \a orig. The data in \a orig is duplicated. */ arr (const arr &orig): arrT >(orig) {} }; /*! One-dimensional array type, with selectable storage alignment. */ template class arr_align: public arrT > { public: /*! Creates a zero-sized array. */ arr_align() : arrT >() {} /*! Creates an array with \a sz entries. */ explicit arr_align(tsize sz) : arrT >(sz) {} /*! Creates an array with \a sz entries, and initializes them with \a inival. */ arr_align(tsize sz, const T &inival) : arrT >(sz,inival) {} }; /*! Two-dimensional array type, with selectable storage management. The storage ordering is the same as in C. An entry is located by address arithmetic, not by double dereferencing. The indices start at zero. */ template class arr2T { private: tsize s1, s2; arrT d; public: /*! Creates a zero-sized array. */ arr2T() : s1(0), s2(0) {} /*! Creates an array with the dimensions \a sz1 and \a sz2. */ arr2T(tsize sz1, tsize sz2) : s1(sz1), s2(sz2), d(s1*s2) {} /*! Creates an array with the dimensions \a sz1 and \a sz2 and initializes them with \a inival. */ arr2T(tsize sz1, tsize sz2, const T &inival) : s1(sz1), s2(sz2), d (s1*s2) { fill(inival); } /*! Creates the array as a copy of \a orig. */ arr2T(const arr2T &orig) : s1(orig.s1), s2(orig.s2), d(orig.d) {} /*! Frees the memory associated with the array. */ ~arr2T() {} /*! Returns the first array dimension. */ tsize size1() const { return s1; } /*! Returns the second array dimension. */ tsize size2() const { return s2; } /*! Returns the total array size, i.e. the product of both dimensions. */ tsize size () const { return s1*s2; } /*! Allocates space for an array with \a sz1*sz2 elements. The content of the array is undefined on exit. \a sz1 or \a sz2 can be 0. If \a sz1*sz2 is the same as the currently allocated space, no reallocation is performed. */ void alloc (tsize sz1, tsize sz2) { if (sz1*sz2 != d.size()) d.alloc(sz1*sz2); s1=sz1; s2=sz2; } /*! Allocates space for an array with \a sz1*sz2 elements. All elements are set to \a inival. \a sz1 or \a sz2 can be 0. If \a sz1*sz2 is the same as the currently allocated space, no reallocation is performed. */ void allocAndFill (tsize sz1, tsize sz2, const T &inival) { alloc(sz1,sz2); fill(inival); } /*! Allocates space for an array with \a sz1*sz2 elements. The content of the array is undefined on exit. \a sz1 or \a sz2 can be 0. If \a sz1*sz2 is smaller than the currently allocated space, no reallocation is performed. */ void fast_alloc (tsize sz1, tsize sz2) { if (sz1*sz2<=d.size()) { s1=sz1; s2=sz2; } else alloc(sz1,sz2); } /*! Deallocates the space and makes the array zero-sized. */ void dealloc () {d.dealloc(); s1=0; s2=0;} /*! Sets all array elements to \a val. */ void fill (const T &val) { for (tsize m=0; m T *operator[] (T2 n) {return &d[n*s2];} /*! Returns a constant pointer to the beginning of slice \a n. */ template const T *operator[] (T2 n) const {return &d[n*s2];} /*! Returns a reference to the element with the indices \a n1 and \a n2. */ template T &operator() (T2 n1, T3 n2) {return d[n1*s2 + n2];} /*! Returns a constant reference to the element with the indices \a n1 and \a n2. */ template const T &operator() (T2 n1, T3 n2) const {return d[n1*s2 + n2];} /*! Returns the minimum and maximum entry in \a minv and \a maxv, respectively. Throws an exception if the array is zero-sized. */ void minmax (T &minv, T &maxv) const { planck_assert(s1*s2>0, "trying to find min and max of a zero-sized array"); minv=maxv=d[0]; for (tsize m=1; mmaxv) maxv=d[m]; } } /*! Swaps contents and sizes with \a other. */ void swap (arr2T &other) { d.swap(other.d); std::swap(s1,other.s1); std::swap(s2,other.s2); } /*! Returns \c true if the array and \a other have the same dimensions, else \c false. */ template bool conformable (const arr2T &other) const { return (other.size1()==s1) && (other.size2()==s2); } }; /*! Two-dimensional array type. The storage ordering is the same as in C. An entry is located by address arithmetic, not by double dereferencing. The indices start at zero. */ template class arr2: public arr2T > { public: /*! Creates a zero-sized array. */ arr2() : arr2T > () {} /*! Creates an array with the dimensions \a sz1 and \a sz2. */ arr2(tsize sz1, tsize sz2) : arr2T > (sz1,sz2) {} /*! Creates an array with the dimensions \a sz1 and \a sz2 and initializes them with \a inival. */ arr2(tsize sz1, tsize sz2, const T &inival) : arr2T > (sz1,sz2,inival) {} }; /*! Two-dimensional array type, with selectable storage alignment. The storage ordering is the same as in C. An entry is located by address arithmetic, not by double dereferencing. The indices start at zero. */ template class arr2_align: public arr2T > { public: /*! Creates a zero-sized array. */ arr2_align() : arr2T > () {} /*! Creates an array with the dimensions \a sz1 and \a sz2. */ arr2_align(tsize sz1, tsize sz2) : arr2T > (sz1,sz2) {} /*! Creates an array with the dimensions \a sz1 and \a sz2 and initializes them with \a inival. */ arr2_align(tsize sz1, tsize sz2, const T &inival) : arr2T > (sz1,sz2,inival) {} }; /*! Two-dimensional array type. An entry is located by double dereferencing, i.e. via an array of pointers. The indices start at zero. */ template class arr2b { private: tsize s1, s2; arr d; arr d1; void fill_d1() { for (tsize m=0; m T *operator[] (T2 n) {return d1[n];} /*! Returns a constant pointer to the beginning of slice \a n. */ template const T *operator[] (T2 n) const {return d1[n];} /*! Returns a pointer to the beginning of the pointer array. */ T **p0() {return &d1[0];} }; /*! Three-dimensional array type. The storage ordering is the same as in C. An entry is located by address arithmetic, not by multiple dereferencing. The indices start at zero. */ template class arr3 { private: tsize s1, s2, s3, s2s3; arr d; public: /*! Creates a zero-sized array. */ arr3() : s1(0), s2(0), s3(0), s2s3(0), d(0) {} /*! Creates an array with the dimensions \a sz1, \a sz2 and \a sz3. */ arr3(tsize sz1, tsize sz2, tsize sz3) : s1(sz1), s2(sz2), s3(sz3), s2s3(s2*s3), d(s1*s2*s3) {} /*! Creates the array as a copy of \a orig. */ arr3(const arr3 &orig) : s1(orig.s1), s2(orig.s2), s3(orig.s3), s2s3(orig.s2s3), d(orig.d) {} /*! Frees the memory associated with the array. */ ~arr3() {} /*! Returns the first array dimension. */ tsize size1() const { return s1; } /*! Returns the second array dimension. */ tsize size2() const { return s2; } /*! Returns the third array dimension. */ tsize size3() const { return s3; } /*! Returns the total array size, i.e. the product of all dimensions. */ tsize size () const { return s1*s2*s3; } /*! Allocates space for an array with \a sz1*sz2*sz3 elements. The content of the array is undefined on exit. */ void alloc (tsize sz1, tsize sz2, tsize sz3) { d.alloc(sz1*sz2*sz3); s1=sz1; s2=sz2; s3=sz3; s2s3=s2*s3; } /*! Deallocates the space and makes the array zero-sized. */ void dealloc () {d.dealloc(); s1=0; s2=0; s3=0; s2s3=0;} /*! Sets all array elements to \a val. */ void fill (const T &val) { d.fill(val); } /*! Changes the array to be a copy of \a orig. */ arr3 &operator= (const arr3 &orig) { if (this==&orig) return *this; alloc (orig.s1, orig.s2, orig.s3); d = orig.d; return *this; } /*! Returns a reference to the element with the indices \a n1, \a n2 and \a n3. */ template T &operator() (T2 n1, T3 n2, T4 n3) {return d[n1*s2s3 + n2*s3 + n3];} /*! Returns a constant reference to the element with the indices \a n1, \a n2 and \a n3. */ template const T &operator() (T2 n1, T3 n2, T4 n3) const {return d[n1*s2s3 + n2*s3 + n3];} /*! Swaps contents and sizes with \a other. */ void swap (arr3 &other) { d.swap(other.d); std::swap(s1,other.s1); std::swap(s2,other.s2); std::swap(s3,other.s3); std::swap(s2s3,other.s2s3); } /*! Returns \c true if the array and \a other have the same dimensions, else \c false. */ template bool conformable (const arr3 &other) const { return (other.size1()==s1)&&(other.size2()==s2)&&(other.size3()==s3); } }; /*! \} */ #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/alloc_utils.h0000650000175000017530000000502212255154051027324 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file alloc_utils.h * Classes providing raw memory allocation and deallocation support. * * Copyright (C) 2011-2013 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_ALLOC_UTILS_H #define PLANCK_ALLOC_UTILS_H #include #include "datatypes.h" template class normalAlloc__ { public: T *alloc(tsize sz) const { return (sz>0) ? new T[sz] : 0; } void dealloc (T *ptr) const { delete[] ptr; } }; template class alignAlloc__ { private: enum { max_nat_align = sizeof(void *) }; // C++11: alignof(std::max_align_t) public: T *alloc(tsize sz) const { using namespace std; if (sz==0) return 0; planck_assert((align&(align-1))==0,"alignment must be power of 2"); void *res; if (align<=max_nat_align) { res=malloc(sz*sizeof(T)); planck_assert(res!=0,"error in malloc()"); } else { tsize overhead=align-1+sizeof(void*); void *ptr=malloc(sz*sizeof(T)+overhead); planck_assert(ptr!=0,"error in malloc()"); tsize sptr=reinterpret_cast(ptr); sptr = (sptr+overhead) & ~(align-1); void **ptr2 = reinterpret_cast(sptr); ptr2[-1]=ptr; res=ptr2; } return static_cast(res); } void dealloc(T *ptr) const { using namespace std; if (align<=max_nat_align) free(ptr); else { if (ptr==0) return; void **ptr2 = reinterpret_cast(ptr); free (ptr2[-1]); } } }; #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/fitshandle.h0000650000175000017530000002660112255154051027141 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file fitshandle.h * Declaration of the FITS I/O helper class used by LevelS * * Copyright (C) 2002-2011 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_FITSHANDLE_H #define PLANCK_FITSHANDLE_H #include #include #include "arr.h" #include "datatypes.h" #include "safe_cast.h" /*! \defgroup fitsgroup FITS-related functionality */ /*! \{ */ /*! Class containing information about a single column in a FITS table. */ class fitscolumn { private: std::string name_, unit_; int64 repcount_; PDT type_; public: fitscolumn(); /*! Creates a \a fitscolumn with name \a nm, unit \a un, a repetition count of \a rc, and a Planck type of \a tp. */ fitscolumn (const std::string &nm, const std::string &un, int64 rc, PDT tp); ~fitscolumn(); /*! Returns the column name. */ const std::string &name() const {return name_;} /*! Returns the column unit string. */ const std::string &unit() const {return unit_;} /*! Returns the repetition count of the column. */ int64 repcount() const {return repcount_;} /*! Returns the Planck type of the column. */ PDT type() const {return type_;} }; /*! Class for performing I/O from/to FITS files. */ class fitshandle { private: enum { INVALID = -4711 }; mutable int status; void *fptr; int hdutype_, bitpix_; std::vector axes_; std::vector columns_; int64 nrows_; void check_errors() const; void clean_data(); void clean_all(); bool connected() const { return (hdutype_!=INVALID); } bool table_hdu (tsize col) const; bool image_hdu () const; void init_image(); void init_asciitab(); void init_bintab(); void init_data(); void read_col (int colnum, void *data, int64 ndata, PDT type, int64 offset) const; void write_col (int colnum, const void *data, int64 ndata, PDT type, int64 offset); void getKeyHelper(const std::string &name) const; public: /*! the list of modes in which a \a fitshandle can be opened. */ enum openmethod { CREATE, /*!< the file must not yet exist */ OPEN /*!< the file must already exist */ }; /*! \name File-level access and manipulation. */ /*! \{ */ /*! Creates an unconnected \a fitshandle. */ fitshandle (); /*! Performs all necessary cleanups. */ ~fitshandle(); /*! Connects to the file \a fname. */ void open (const std::string &fname); /*! Creates the file \a fname and connects to it. */ void create (const std::string &fname); /*! Closes the current file. */ void close () { clean_all(); } /*! Deletes the file with name \a name. */ static void delete_file (const std::string &name); /*! Returns the name of the connected file. */ std::string fileName() const; /*! Jumps to the HDU with the absolute number \a hdu. */ void goto_hdu (int hdu); /*! Returns the number of HDUs in the file. */ int num_hdus () const; /*! Asserts that the PDMTYPE of the current HDU is \a pdmtype. */ void assert_pdmtype (const std::string &pdmtype) const; /*! Inserts a binary table described by \a cols. The HDU has the name \a extname. */ void insert_bintab (const std::vector &cols, const std::string &extname="xtension"); /*! Inserts an ASCII table described by \a cols. The width of the columns is chosen automatically, in a way that avoids truncation. The HDU has the name \a extname. */ void insert_asctab (const std::vector &cols, const std::string &extname="xtension"); /*! Inserts a FITS image with the type given by \a type and dimensions given by \a Axes. */ void insert_image (PDT type, const std::vector &Axes); /*! Inserts a 2D FITS image with the type given by \a type, whose contents are given in \a data. */ template void insert_image (PDT type, const arr2 &data); /*! Computes the checksum for the current HDU and writes it into the header. */ void write_checksum(); /*! \} */ /*! \name Information about the current HDU */ /*! \{ */ /*! Returns the dimensions of the current image. */ const std::vector &axes() const; /*! Returns the name of column \a #i. */ const std::string &colname(int i) const; /*! Returns the unit of column \a #i. */ const std::string &colunit(int i) const; /*! Returns repetition count of column \a #i. */ int64 repcount(int i) const; /*! Returns the Planck type for column \a #i. */ PDT coltype(int i) const; /*! Returns the number of columns in the current table. */ int ncols() const; /*! Returns the number of rows in the current table. */ int64 nrows() const; /*! Returns the total number of elements (nrows*repcount) in column \a #i. */ int64 nelems(int i) const; /*! Returns the number of elements that should be read/written in a single call for optimum performance. This depends on the current HDU. */ int64 efficientChunkSize(int i) const; /*! \} */ /*! \name Keyword-handling methods */ /*! \{ */ /*! Returns a list of all user-defined keys in the current HDU in \a keys. */ void get_all_keys (std::vector &keys) const; void set_key_void (const std::string &key, const void *value, PDT type, const std::string &comment=""); /*! Updates \a key with \a value and \a comment. */ template void set_key (const std::string &name, const T &value, const std::string &comment="") { set_key_void (name, &value, planckType(), comment); } /*! Deletes \a key from the header. */ void delete_key (const std::string &name); /*! Adds \a comment as a comment line. */ void add_comment (const std::string &comment); void get_key_void (const std::string &key, void *value, PDT type) const; /*! Reads the value belonging to \a key and returns it in \a value. */ template void get_key (const std::string &name, T &value) const { get_key_void (name,&value,planckType()); } /*! Returms the value belonging to \a key. */ template T get_key (const std::string &name) const { T tmp; get_key(name, tmp); return tmp; } /*! Returns \a true if \a key is present, else \a false. */ bool key_present (const std::string &name) const; /*! \} */ /*! \name Methods for table data I/O */ /*! \{ */ void read_column_raw_void (int colnum, void *data, PDT type, int64 num, int64 offset=0) const; /*! Copies \a num elements from column \a colnum to the memory pointed to by \a data, starting at offset \a offset in the column. */ template void read_column_raw (int colnum, T *data, int64 num, int64 offset=0) const { read_column_raw_void (colnum, data, planckType(), num, offset); } /*! Fills \a data with elements from column \a colnum, starting at offset \a offset in the column. */ template void read_column (int colnum, arr &data, int64 offset=0) const { read_column_raw (colnum, &(data[0]), data.size(), offset); } /*! Reads the element \a #offset from column \a colnum into \a data. */ template void read_column (int colnum, T &data, int64 offset=0) const { read_column_raw (colnum, &data, 1, offset); } /*! Reads the whole column \a colnum into \a data (which is resized accordingly). */ template void read_entire_column (int colnum, arr &data) const { data.alloc(safe_cast(nelems(colnum))); read_column (colnum, data); } void write_column_raw_void (int colnum, const void *data, PDT type, int64 num, int64 offset=0); /*! Copies \a num elements from the memory pointed to by \a data to the column \a colnum, starting at offset \a offset in the column. */ template void write_column_raw (int colnum, const T *data, int64 num, int64 offset=0) { write_column_raw_void (colnum, data, planckType(), num, offset); } /*! Copies all elements from \a data to the column \a colnum, starting at offset \a offset in the column. */ template void write_column (int colnum, const arr &data, int64 offset=0) { write_column_raw (colnum, &(data[0]), data.size(), offset); } /*! Copies \a data to the column \a colnum, at the position \a offset. */ template void write_column (int colnum, const T &data, int64 offset=0) { write_column_raw (colnum, &data, 1, offset); } /*! \} */ /*! \name Methods for image data I/O */ /*! \{ */ /*! Reads the current image into \a data, which is resized accordingly. */ template void read_image (arr2 &data) const; /*! Reads the current image into \a data, which is resized accordingly. */ template void read_image (arr3 &data) const; /*! Reads a partial image, whose dimensions are given by the dimensions of \a data, into data. The starting pixel indices are given by \a xl and \a yl. */ template void read_subimage (arr2 &data, int xl, int yl) const; void read_subimage_void (void *data, PDT type, tsize ndata, int64 offset=0) const; /*! Fills \a data with values from the image, starting at the offset \a offset in the image. The image is treated as a one-dimensional array. */ template void read_subimage (arr &data, int64 offset=0) const { read_subimage_void (&data[0],planckType(),data.size(),offset); } void write_image2D_void (const void *data, PDT type, tsize s1, tsize s2); /*! Writes \a data into the current image. \a data must have the same dimensions as specified in the HDU. */ template void write_image (const arr2 &data) { write_image2D_void (&data[0][0],planckType(),data.size1(), data.size2()); } void write_subimage_void (const void *data, PDT type, tsize sz, int64 offset); /*! Copies \a data to the image, starting at the offset \a offset in the image. The image is treated as a one-dimensional array. */ template void write_subimage (const arr &data, int64 offset=0) { write_subimage_void(&data[0],planckType(),data.size(),offset); } /*! \} */ }; /*! \} */ #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/datatypes.h0000654000175000017530000002555412264023644027033 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file datatypes.h * This file defines various platform-independent data types. * If any of the requested types is not available, compilation aborts * with an error (unfortunately a rather obscure one). * * Copyright (C) 2004-2011 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_DATATYPES_H #define PLANCK_DATATYPES_H #include #include #include #include "xcomplex.h" #include "error_handling.h" // Template magic to select the proper data types. These templates // should not be used outside this file. template struct sizeChooserHelper__ { typedef void TYPE; }; template struct sizeChooserHelper__ { typedef T TYPE; }; template struct sizeChooserHelper2__ { typedef T1 TYPE; }; template struct sizeChooserHelper2__ { typedef T2 TYPE; }; template struct sizeChooserHelper2__ { typedef T3 TYPE; }; template <> struct sizeChooserHelper2__ { }; template struct sizeChooser__ { typedef typename sizeChooserHelper2__ ::TYPE, typename sizeChooserHelper__::TYPE, typename sizeChooserHelper__::TYPE >::TYPE TYPE; }; typedef signed char int8; typedef unsigned char uint8; typedef sizeChooser__<2, short, int>::TYPE int16; typedef sizeChooser__<2, unsigned short, unsigned int>::TYPE uint16; typedef sizeChooser__<4, int, long, short>::TYPE int32; typedef sizeChooser__<4, unsigned int, unsigned long, unsigned short>::TYPE uint32; typedef sizeChooser__<8, long, long long>::TYPE int64; typedef sizeChooser__<8, unsigned long, unsigned long long>::TYPE uint64; typedef sizeChooser__<4, float, double>::TYPE float32; typedef sizeChooser__<8, double, long double>::TYPE float64; /*! unsigned integer type which should be used for array sizes */ typedef std::size_t tsize; /*! signed integer type which should be used for relative array indices */ typedef std::ptrdiff_t tdiff; /*! mapping of Planck data types to integer constants */ enum PDT { PLANCK_INT8 = 0, PLANCK_UINT8 = 1, PLANCK_INT16 = 2, PLANCK_UINT16 = 3, PLANCK_INT32 = 4, PLANCK_UINT32 = 5, PLANCK_INT64 = 6, PLANCK_UINT64 = 7, PLANCK_FLOAT32 = 8, PLANCK_FLOAT64 = 9, PLANCK_BOOL = 10, PLANCK_STRING = 11, PLANCK_INVALID = -1 }; /*! Returns the \a PDT constant associated with \a T. */ template inline PDT planckType() { planck_fail(T::UNSUPPORTED_DATA_TYPE); } template<> inline PDT planckType () { return PLANCK_INT8; } template<> inline PDT planckType () { return PLANCK_UINT8; } template<> inline PDT planckType () { return PLANCK_INT16; } template<> inline PDT planckType () { return PLANCK_UINT16; } template<> inline PDT planckType () { return PLANCK_INT32; } template<> inline PDT planckType () { return PLANCK_UINT32; } template<> inline PDT planckType () { return PLANCK_INT64; } template<> inline PDT planckType () { return PLANCK_UINT64; } template<> inline PDT planckType () { return PLANCK_FLOAT32;} template<> inline PDT planckType () { return PLANCK_FLOAT64;} template<> inline PDT planckType () { return PLANCK_BOOL; } template<> inline PDT planckType() { return PLANCK_STRING; } /*! Returns the size (in bytes) of the Planck data type \a type. */ inline int type2size (PDT type) { switch (type) { case PLANCK_INT8 : case PLANCK_UINT8 : case PLANCK_BOOL : case PLANCK_STRING : return 1; case PLANCK_INT16 : case PLANCK_UINT16 : return 2; case PLANCK_INT32 : case PLANCK_UINT32 : case PLANCK_FLOAT32: return 4; case PLANCK_INT64 : case PLANCK_UINT64 : case PLANCK_FLOAT64: return 8; default: planck_fail ("type2size: unsupported data type"); } } /*! Converts the string \a type to a \a PDT. */ inline PDT string2type(const std::string &type) { if (type=="FLOAT64") return PLANCK_FLOAT64; if (type=="FLOAT32") return PLANCK_FLOAT32; if (type=="INT8") return PLANCK_INT8; if (type=="UINT8") return PLANCK_UINT8; if (type=="INT16") return PLANCK_INT16; if (type=="UINT16") return PLANCK_UINT16; if (type=="INT32") return PLANCK_INT32; if (type=="UINT32") return PLANCK_UINT32; if (type=="INT64") return PLANCK_INT64; if (type=="UINT64") return PLANCK_UINT64; if (type=="BOOL") return PLANCK_BOOL; if (type=="STRING") return PLANCK_STRING; planck_fail ("string2type: unknown data type '"+type+"'"); } /*! Converts the Planck data type \a type to a C string. */ inline const char *type2string (PDT type) { switch (type) { case PLANCK_INT8 : return "INT8"; case PLANCK_UINT8 : return "UINT8"; case PLANCK_INT16 : return "INT16"; case PLANCK_UINT16 : return "UINT16"; case PLANCK_INT32 : return "INT32"; case PLANCK_UINT32 : return "UINT32"; case PLANCK_INT64 : return "INT64"; case PLANCK_UINT64 : return "UINT64"; case PLANCK_FLOAT32: return "FLOAT32"; case PLANCK_FLOAT64: return "FLOAT64"; case PLANCK_BOOL : return "BOOL"; case PLANCK_STRING : return "STRING"; default: planck_fail ("type2string: unsupported data type"); } } /*! Returns a C string describing the data type \a T. */ template inline const char *type2typename () { planck_fail(T::UNSUPPORTED_DATA_TYPE); } template<> inline const char *type2typename () { return "signed char"; } template<> inline const char *type2typename () { return "unsigned char"; } template<> inline const char *type2typename () { return "short"; } template<> inline const char *type2typename () { return "unsigned short"; } template<> inline const char *type2typename () { return "int"; } template<> inline const char *type2typename () { return "unsigned int"; } template<> inline const char *type2typename () { return "long"; } template<> inline const char *type2typename () { return "unsigned long"; } template<> inline const char *type2typename () { return "long long"; } template<> inline const char *type2typename () { return "unsigned long long"; } template<> inline const char *type2typename () { return "float"; } template<> inline const char *type2typename () { return "double"; } template<> inline const char *type2typename () { return "long double"; } template<> inline const char *type2typename () { return "bool"; } template<> inline const char *type2typename () { return "std::string"; } /*! mapping of "native" data types to integer constants */ enum NDT { NAT_CHAR, NAT_SCHAR, NAT_UCHAR, NAT_SHORT, NAT_USHORT, NAT_INT, NAT_UINT, NAT_LONG, NAT_ULONG, NAT_LONGLONG, NAT_ULONGLONG, NAT_FLOAT, NAT_DOUBLE, NAT_LONGDOUBLE, NAT_FCMPLX, NAT_DCMPLX, NAT_BOOL, NAT_STRING }; /*! Returns the \a NDT constant associated with \a T. */ template inline NDT nativeType() { planck_fail(T::UNSUPPORTED_DATA_TYPE); } template<> inline NDT nativeType () { return NAT_CHAR; } template<> inline NDT nativeType () { return NAT_SCHAR; } template<> inline NDT nativeType () { return NAT_UCHAR; } template<> inline NDT nativeType () { return NAT_SHORT; } template<> inline NDT nativeType () { return NAT_USHORT; } template<> inline NDT nativeType () { return NAT_INT; } template<> inline NDT nativeType () { return NAT_UINT; } template<> inline NDT nativeType () { return NAT_LONG; } template<> inline NDT nativeType () { return NAT_ULONG; } template<> inline NDT nativeType () { return NAT_LONGLONG; } template<> inline NDT nativeType() { return NAT_ULONGLONG; } template<> inline NDT nativeType () { return NAT_FLOAT; } template<> inline NDT nativeType () { return NAT_DOUBLE; } template<> inline NDT nativeType () { return NAT_LONGDOUBLE;} template<> inline NDT nativeType >() { return NAT_FCMPLX; } template<> inline NDT nativeType >() { return NAT_DCMPLX; } template<> inline NDT nativeType >() { return NAT_FCMPLX; } template<> inline NDT nativeType >() { return NAT_DCMPLX; } template<> inline NDT nativeType () { return NAT_BOOL; } template<> inline NDT nativeType () { return NAT_STRING; } /*! Returns the size (in bytes) of the native data type \a type. */ inline int ndt2size (NDT type) { switch (type) { case NAT_CHAR : case NAT_SCHAR : case NAT_UCHAR : return sizeof(char); case NAT_SHORT : case NAT_USHORT : return sizeof(short); case NAT_INT : case NAT_UINT : return sizeof(int); case NAT_LONG : case NAT_ULONG : return sizeof(long); case NAT_LONGLONG : case NAT_ULONGLONG : return sizeof(long long); case NAT_FLOAT : return sizeof(float); case NAT_DOUBLE : return sizeof(double); case NAT_LONGDOUBLE: return sizeof(long double); case NAT_FCMPLX : return sizeof(std::complex); case NAT_DCMPLX : return sizeof(std::complex); case NAT_BOOL : return sizeof(bool); default: planck_fail ("ndt2size: unsupported data type"); } } #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/math_utils.h0000654000175000017530000001537612264023644027207 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file math_utils.h * Various convenience mathematical functions. * * Copyright (C) 2002-2013 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_MATH_UTILS_H #define PLANCK_MATH_UTILS_H #include #include #include "datatypes.h" /*! \defgroup mathutilsgroup Mathematical helper functions */ /*! \{ */ /*! Returns \e true if | \a a-b | <= \a epsilon * | \a b |, else \e false. */ template inline bool approx (F a, F b, F epsilon=1e-5) { using namespace std; return abs(a-b) <= (epsilon*abs(b)); } /*! Returns \e true if | \a a-b | <= \a epsilon, else \e false. */ template inline bool abs_approx (F a, F b, F epsilon=1e-5) { using namespace std; return abs(a-b) <= epsilon; } /*! Returns the largest integer which is smaller than (or equal to) \a arg. */ template inline I ifloor (F arg) { using namespace std; return I(floor(arg)); } /*! Returns the integer which is nearest to \a arg. */ template inline I nearest (F arg) { return ifloor(arg+0.5); } /*! Returns the remainder of the division \a v1/v2. The result is non-negative. \a v1 can be positive or negative; \a v2 must be positive. */ inline double fmodulo (double v1, double v2) { using namespace std; if (v1>=0) return (v1=0) ? ((v1 inline I imodulo (I v1, I v2) { I v=v1%v2; return (v>=0) ? v : v+v2; } /*! Returns -1 if \a signvalue is negative, else +1. */ template inline T sign (const T& signvalue) { return (signvalue>=0) ? 1 : -1; } /*! Returns \a val*pow(-1,m) */ template inline T xpow (I m, T val) { return (m&1) ? -val : val; } template struct isqrt_helper__ {}; template struct isqrt_helper__ { static uint32 isqrt (I arg) { using namespace std; return uint32 (sqrt(arg+0.5)); } }; template struct isqrt_helper__ { static uint32 isqrt (I arg) { using namespace std; I res = sqrt(double(arg)+0.5); if (arg<(int64(1)<<50)) return uint32(res); if (res*res>arg) --res; else if ((res+1)*(res+1)<=arg) ++res; return uint32(res); } }; /*! Returns the integer \a n, which fulfills \a n*n<=arg<(n+1)*(n+1). */ template inline uint32 isqrt (I arg) { return isqrt_helper__4)>::isqrt(arg); } /*! Returns the largest integer \a n that fulfills \a 2^n<=arg. */ template inline int ilog2 (I arg) { #ifdef __GNUC__ if (arg==0) return 0; if (sizeof(I)==sizeof(int)) return 8*sizeof(int)-1-__builtin_clz(arg); if (sizeof(I)==sizeof(long)) return 8*sizeof(long)-1-__builtin_clzl(arg); if (sizeof(I)==sizeof(long long)) return 8*sizeof(long long)-1-__builtin_clzll(arg); #endif int res=0; while (arg > 0x0000FFFF) { res+=16; arg>>=16; } if (arg > 0x000000FF) { res|=8; arg>>=8; } if (arg > 0x0000000F) { res|=4; arg>>=4; } if (arg > 0x00000003) { res|=2; arg>>=2; } if (arg > 0x00000001) { res|=1; } return res; } template inline int ilog2_nonnull (I arg) { #ifdef __GNUC__ if (sizeof(I)<=sizeof(int)) return 8*sizeof(int)-1-__builtin_clz(arg); if (sizeof(I)==sizeof(long)) return 8*sizeof(long)-1-__builtin_clzl(arg); if (sizeof(I)==sizeof(long long)) return 8*sizeof(long long)-1-__builtin_clzll(arg); #endif return ilog2 (arg); } /*! Returns the number of bits needed to encode a value in the range [0; \a arg] */ template int nbits(I arg) { if (arg<=1) return 0; return 1+ilog2(arg-1); } /*! Returns \a atan2(y,x) if \a x!=0 or \a y!=0; else returns 0. */ inline double safe_atan2 (double y, double x) { using namespace std; return ((x==0.) && (y==0.)) ? 0.0 : atan2(y,x); } /*! Helper function for linear interpolation (or extrapolation). The array must be ordered in ascending order; no two values may be equal. */ template inline void interpol_helper (const Iter &begin, const Iter &end, const T &val, Comp comp, tsize &idx, T &frac) { using namespace std; planck_assert((end-begin)>1,"sequence too small for interpolation"); idx = lower_bound(begin,end,val,comp)-begin; if (idx>0) --idx; idx = min(tsize(end-begin-2),idx); frac = (val-begin[idx])/(begin[idx+1]-begin[idx]); } /*! Helper function for linear interpolation (or extrapolation). The array must be ordered in ascending order; no two values may be equal. */ template inline void interpol_helper (const Iter &begin, const Iter &end, const T &val, tsize &idx, T &frac) { interpol_helper (begin,end,val,std::less(),idx,frac); } /*! \} */ template inline bool multiequal (const T &a, const T &b, const T &c) { return (a==b) && (a==c); } template inline bool multiequal (const T &a, const T &b, const T &c, const T &d) { return (a==b) && (a==c) && (a==d); } template inline bool multiequal (const T &a, const T &b, const T &c, const T &d, const T &e) { return (a==b) && (a==c) && (a==d) && (a==e); } template inline bool multiequal (const T &a, const T &b, const T &c, const T &d, const T &e, const T &f) { return (a==b) && (a==c) && (a==d) && (a==e) && (a==f); } template class kahan_adder { private: T sum, c; public: kahan_adder(): sum(0), c(0) {} void add (const T &val) { T y=val-c; T t=sum+y; c=(t-sum)-y; sum=t; } T result() const { return sum; } }; #endif 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" " " " " " XXXXXXXX" " XX " " XX " " XX " " XX " " XX " " XXXXXXXX" " " " " " " " " " " " XXXX" " XX " " XX " " XX " " XXX " " XXX " " XX " " XX " " XX " " XXXX" " " " " " " " " " " " XX " " XX " " XX " " XX " " XX " " XX " " XX " " XX " " XX " " XX " " " " " " " " " " " " XXXX " " XX " " XX " " XX " " XXX " " XXX " " XX " " XX " " XX " " XXXX " " " " " " " " " " " " XXX XX" " XX XX XX" " XX XXX " " " " " " " " " " " " " " " " " " " " " " " " " " " " " " " " " " " " " " " " " " " " " " " " " " " ; #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/vec3.h0000650000175000017530000001132112255154051025651 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file vec3.h * Class representing 3D cartesian vectors * * Copyright (C) 2003, 2006 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_VEC3_H #define PLANCK_VEC3_H #include #include #include "datatypes.h" /*! \defgroup vec3group 3D vectors */ /*! \{ */ /*! Class representing a 3D cartesian vector. */ templateclass vec3_t { public: T x, /*!< x-coordinate */ y, /*!< y-coordinate */ z; /*!< z-coordinate */ /*! Default constructor. Does not initialize \a x, \a y, and \a z. */ vec3_t () {} /*! Creates a vector with the coordinates \a xc, \a yc, and \a zc. */ vec3_t (T xc, T yc, T zc) : x(xc), y(yc), z(zc) {} template explicit vec3_t (const vec3_t &orig) : x(orig.x), y(orig.y), z(orig.z) {} /*! Sets the vector components to \a xc, \a yc, and \a zc. */ void Set (T xc, T yc, T zc) { x=xc; y=yc; z=zc; } /*! Creates a unit vector from a z coordinate and an azimuthal angle. */ void set_z_phi (T z_, T phi) { using namespace std; T sintheta = sqrt((T(1)-z_)*(T(1)+z_)); x = sintheta*cos(phi); y = sintheta*sin(phi); z = z_; } /*! Normalizes the vector to length 1. */ void Normalize () { using namespace std; T l = T(1)/sqrt (x*x + y*y + z*z); x*=l; y*=l; z*=l; } vec3_t Norm() const { vec3_t res(*this); res.Normalize(); return res; } /*! Returns the length of the vector. */ T Length () const { return sqrt (x*x + y*y + z*z); } /*! Returns the squared length of the vector. */ T SquaredLength () const { return (x*x + y*y + z*z); } /*! Returns the vector with the signs of all coordinates flipped. */ const vec3_t operator- () const { return vec3_t (-x, -y, -z); } /*! Flips the signs of all coordinates. */ void Flip () { x=-x; y=-y; z=-z; } /*! Returns (\a *this + \a vec). */ const vec3_t operator+ (const vec3_t &vec) const { return vec3_t (x+vec.x, y+vec.y, z+vec.z); } /*! Adds \a vec to \a *this. */ vec3_t &operator+= (const vec3_t &vec) { x+=vec.x; y+=vec.y; z+=vec.z; return *this; } /*! Returns (\a *this - \a vec). */ const vec3_t operator- (const vec3_t &vec) const { return vec3_t (x-vec.x, y-vec.y, z-vec.z); } /*! Subtracts \a vec from \a *this. */ vec3_t &operator-= (const vec3_t &vec) { x-=vec.x; y-=vec.y; z-=vec.z; return *this; } /*! Returns the vector scaled by \a fact. */ const vec3_t operator* (T fact) const { return vec3_t (x*fact, y*fact, z*fact); } /*! Returns the vector scaled by \a 1/fact. */ const vec3_t operator/ (T fact) const { T xfact = T(1)/fact; return vec3_t (x*xfact, y*xfact, z*xfact); } /*! Scales the vector by \a fact. */ vec3_t &operator*= (T fact) { x*=fact; y*=fact; z*=fact; return *this; } }; /*! Returns the dot product of \a v1 and \a v2. \relates vec3_t */ template inline T dotprod(const vec3_t &v1, const vec3_t &v2) { return v1.x*v2.x + v1.y*v2.y + v1.z*v2.z; } /*! Returns the cross product of \a a and \a b. \relates vec3_t */ template inline vec3_t crossprod (const vec3_t &a, const vec3_t &b) { return vec3_t(a.y*b.z - a.z*b.y, a.z*b.x - a.x*b.z, a.x*b.y - a.y*b.x); } /*! Writes \a v to \a os. \relates vec3_t */ template inline std::ostream &operator<< (std::ostream &os, const vec3_t &v) { os << v.x << ", " << v.y << ", " << v.z << std::endl; return os; } /*! Specialisation of vec3_t for 64-bit floating point components */ typedef vec3_t vec3; /*! Specialisation of vec3_t for 32-bit floating point components */ typedef vec3_t vec3f; /*! \} */ #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/planck_rng.h0000650000175000017530000001014512255154051027132 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file planck_rng.h * This file contains the random number generator * used by the Planck LevelS package. * The generator is a C++ port of the xorshift generator xor128() described * in Marsaglia, Journal of Statistical Software 2003, vol 8. * It has a period of 2^128 - 1. * * Copyright (C) 2003, 2004, 2005 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_RNG_H #define PLANCK_RNG_H #include #include "error_handling.h" /*! C++ port of the xorshift generator xor128() described in Marsaglia, Journal of Statistical Software 2003, vol 8. It has a period of 2^128 - 1. */ class planck_rng { private: unsigned int x,y,z,w; double small, gset; bool empty; void twiddle (unsigned int &v) { for (int i=0; i<9; ++i) { v ^= v<<13; v ^= v>>17; v ^= v<<5; } } void init_rng () { // avoid zero seeds if (x==0) x = 123456789; if (y==0) y = 362436069; if (z==0) z = 521288629; if (w==0) w = 88675123; // shuffle the bits of the seeds twiddle(x); twiddle(y); twiddle(z); twiddle(w); // burn in the RNG for (int i=0; i<16; ++i) int_rand_uni(); } public: /*! Initializes the generator with 0 to 4 seed values. */ planck_rng (unsigned int x1=123456789, unsigned int y1=362436069, unsigned int z1=521288629, unsigned int w1=88675123) : x(x1), y(y1), z(z1), w(w1), small(1./(1.+double(0xFFFFFFFF))), gset(0.), empty(true) { planck_assert (sizeof(unsigned int)==4, "wrong integer size for RNG"); init_rng(); } /*! Re-initializes the generator with 0 to 4 seed values. */ void seed (unsigned int x1=123456789, unsigned int y1=362436069, unsigned int z1=521288629, unsigned int w1=88675123) { x = x1; y = y1; z = z1; w = w1; empty = true; init_rng(); } /*! Returns uniformly distributed random integer numbers from the interval [0;0xFFFFFFFF]. */ unsigned int int_rand_uni() { unsigned int t = x^(x<<11); x = y; y = z; z = w; return w=(w^(w>>19))^(t^(t>>8)); } //! Returns uniformly distributed random numbers from the interval [0;1[. double rand_uni() { return small*int_rand_uni(); } //! Returns random numbers with Gaussian distribution (mean=0, sigma=1). /*! Uses rand_uni() internally. */ double rand_gauss() { using namespace std; if (empty) { double v1,v2,rsq; do { v1=2*rand_uni()-1.; v2=2*rand_uni()-1.; rsq=v1*v1+v2*v2; } while ((rsq>=1) || (rsq==0)); double fac=sqrt(-2*log(rsq)/rsq); gset=v1*fac; empty=false; return v2*fac; } else { empty=true; return gset; } } //! Returns exponentially distributed random numbers (mean=1, nonnegative) /*! Uses rand_uni() internally. */ double rand_exp() { using namespace std; double val=rand_uni(); if (val==0.) val=1.; return -log(val); } }; #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/levels_facilities.h0000650000175000017530000000123712255154051030504 0ustar zoncaplanck00000000000000#ifndef LEVELS_FACILITIES_H #define LEVELS_FACILITIES_H int syn_alm_cxx_module (int argc, const char **argv); int alm2map_cxx_module (int argc, const char **argv); int anafast_cxx_module (int argc, const char **argv); int calc_powspec_module (int argc, const char **argv); int hotspots_cxx_module (int argc, const char **argv); int map2tga_module (int argc, const char **argv); int median_filter_cxx_module (int argc, const char **argv); int mult_alm_module (int argc, const char **argv); int smoothing_cxx_module (int argc, const char **argv); int udgrade_cxx_module (int argc, const char **argv); int udgrade_harmonic_cxx_module (int argc, const char **argv); #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/pointing.h0000650000175000017530000000511712255154051026646 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file pointing.h * Class representing a direction in 3D space * * Copyright (C) 2003-2012 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_POINTING_H #define PLANCK_POINTING_H #include #include "vec3.h" /*! \defgroup pointinggroup Pointings */ /*! \{ */ /*! Class representing a direction in 3D space or a location on the unit sphere. All angles in radians. */ class pointing { public: /*! Colatitude of the pointing (i.e. the North pole is at \a theta=0). */ double theta; /*! Longitude of the pointing. */ double phi; /*! Default constructor. \a theta and \a phi are not initialized. */ pointing() {} /*! Creates a pointing with \a Theta and \a Phi. */ pointing (double Theta, double Phi) : theta(Theta), phi(Phi) {} // FIXME: should become "explicit" some time /*! Creates a pointing from the vector \a inp. \a inp need not be normalized. */ pointing (const vec3 &inp) { from_vec3(inp); } // FIXME: should be removed some time /*! Returns a normalized vector pointing in the same direction. */ operator vec3() const { return to_vec3(); } /*! Returns a normalized vector pointing in the same direction. */ vec3 to_vec3() const; /*! Converts \a inp to \a ptg. \a inp need not be normalized. */ void from_vec3 (const vec3 &inp); /*! Changes the angles so that \a 0<=theta<=pi. */ void normalize_theta(); /*! Changes the angles so that \a 0<=theta<=pi and \a 0<=phi<2*pi. */ void normalize(); }; /*! Writes \a p to \a os. \relates pointing */ std::ostream &operator<< (std::ostream &os, const pointing &p); /*! \} */ #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/wigner.h0000650000175000017530000001353612255154051026316 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file wigner.h * Several C++ classes for calculating Wigner matrices * * Copyright (C) 2009-2011 Max-Planck-Society * \author Martin Reinecke and others (see individual classes) */ #ifndef PLANCK_WIGNER_H #define PLANCK_WIGNER_H #include #include "arr.h" #include "sse_utils_cxx.h" /*! Class for calculation of the Wigner matrix at pi/2, using Risbo recursion in a way that cannot easily be parallelised, but is fairly efficient on scalar machines. */ class wigner_d_halfpi_risbo_scalar { private: double pq; arr sqt; arr2 d; int n; void do_line0 (double *l1, int j); void do_line (const double *l1, double *l2, int j, int k); public: wigner_d_halfpi_risbo_scalar(int lmax); const arr2 &recurse (); }; /*! Class for calculation of the Wigner matrix at arbitrary angles, using Risbo recursion in a way that cannot easily be parallelised, but is fairly efficient on scalar machines. */ class wigner_d_risbo_scalar { private: double p,q; arr sqt; arr2 d; int n; void do_line0 (double *l1, int j); void do_line (const double *l1, double *l2, int j, int k); public: wigner_d_risbo_scalar(int lmax, double ang); const arr2 &recurse (); }; /*! Class for calculation of the Wigner matrix at pi/2, using Risbo recursion in a way that can be OpenMP-parallelised. This approach uses more memory and is slightly slower than wigner_d_halfpi_risbo_scalar. */ class wigner_d_halfpi_risbo_openmp { private: double pq; arr sqt; arr2 d,dd; int n; public: wigner_d_halfpi_risbo_openmp(int lmax); const arr2 &recurse (); }; /*! Class for calculation of the Wigner matrix at arbitrary angles, using Risbo recursion in a way that can be OpenMP-parallelised. This approach uses more memory and is slightly slower than wigner_d_risbo_scalar. */ class wigner_d_risbo_openmp { private: double p,q; arr sqt; arr2 d, dd; int n; public: wigner_d_risbo_openmp(int lmax, double ang); const arr2 &recurse (); }; /*! Class for calculation of the Wigner matrix elements by l-recursion. For details, see Prezeau & Reinecke 2010, http://arxiv.org/pdf/1002.1050 */ class wignergen_scalar { protected: typedef double dbl3[3]; // members set in the constructor and kept fixed afterwards double fsmall, fbig, eps; int lmax; arr logsum, lc05, ls05; arr flm1, flm2, cf, costh, xl; arr thetaflip; // members depending on m and m' int m1, m2, am1, am2, mlo, mhi, cosPow, sinPow; long double prefactor; arr fx; bool preMinus; // members depending on theta arr result; enum { large_exponent2=90, minscale=-4, maxscale=14 }; public: /*! Constructs an object that can compute Wigner matrix elements up to a maximum \a l value of \a lmax_, at the colatitudes provided in \a thetas. The generator will be allowed to regard values with absolute magnitudes smaller than \a epsilon as zero; a typical value is 1e-30. */ wignergen_scalar (int lmax_, const arr &thetas, double epsilon); /*! Prepares the object to produce Wigner matrix elements with \a m=m1_ and \a m'=m2_ in subsequent calls to calc(). This operation is not cheap so it is recommended to use calc() for many different colatitudes after every call to prepare(), if possible. */ void prepare (int m1_, int m2_); /*! Computes the Wigner matrix elements for the values of \a m and \a m' set by the preceding call to prepare(), for all \a l up to \a lmax (set in the constructor), and for the \a nth colatitude passed to the constructor. On return, \a firstl contains the index of the first matrix element larger than \a epsilon; all values with smaller indices in the result array are undefined. */ const arr &calc (int nth, int &firstl); void calc (int nth, int &firstl, arr &resx) const; }; class wignergen: public wignergen_scalar { #ifdef __SSE2__ private: arr_align result2; public: wignergen (int lmax_, const arr &thetas, double epsilon) : wignergen_scalar (lmax_,thetas,epsilon), result2(lmax_+1) {} using wignergen_scalar::calc; const arr_align &calc (int nth1, int nth2, int &firstl); void calc (int nth1, int nth2, int &firstl, arr_align &resx) const; #else public: wignergen (int lmax_, const arr &thetas, double epsilon) : wignergen_scalar (lmax_,thetas,epsilon) {} #endif }; class wigner_estimator { private: int lmax, m1, m2, mbig; double xlmax, epsPow, cosm1m2; public: wigner_estimator (int lmax_, double epsPow_); void prepare_m (int m1_, int m2_); bool canSkip (double theta) const; }; #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/xcomplex.h0000650000175000017530000001661012255154051026656 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file xcomplex.h * Class for representing complex numbers, strongly inspired by C++'s * std::complex * * Copyright (C) 2003-2011 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_XCOMPLEX_H #define PLANCK_XCOMPLEX_H #include #include /*! \defgroup complexgroup Complex number support */ /*! \{ */ /*! A class for representing complex numbers. This template is intended as an (under-encapsulated) replacement for the (over-encapsulated) std::complex<>. The goal is to include the whole functionality of std::complex<>, with some additional methods that allow higher performance. The (known and intentional) differences between xcomplex<> and std::complex<> are: - the default constructor of xcomplex<> does nothing, in contrast to std::complex<>, which initialises its members to zero. - xcomplex<> implements the methods real() and imag() according to defect report DR387 */ template class xcomplex { public: T re, /*!< real part */ im; /*!< imaginary part */ /*! Default constructor. \a re and \a im are not initialised. */ xcomplex () {} /*! Creates the complex number (\a re_, \a im_). */ xcomplex (const T &re_, const T &im_) : re(re_), im(im_) {} /*! Creates the complex number (\a re_, 0). */ xcomplex (const T &re_) : re(re_), im(0) {} /*! Creates an xcomplex from a std::complex of identical precision. */ xcomplex (const std::complex &orig) : re(orig.real()), im(orig.imag()) {} /*! Creates a complex number as a copy of \a orig. */ template explicit xcomplex (const xcomplex &orig) : re(T(orig.re)), im(T(orig.im)) {} /*! Conversion operator to std::complex */ operator std::complex () const { return std::complex(re,im); } /*! Returns the real part as lvalue. */ T &real() { return re; } /*! Returns the real part. */ const T &real() const { return re; } /*! Returns the imaginary part as lvalue. */ T &imag() { return im; } /*! Returns the imaginary part. */ const T &imag() const { return im; } /*! Sets the number to (\a re_, \a im_). */ void Set (const T &re_, const T &im_) { re = re_; im = im_; } /*! Sets the number to \a orig. */ xcomplex &operator= (const xcomplex &orig) { re=orig.re; im=orig.im; return *this; } /*! Sets the number to \a orig. */ xcomplex &operator= (const std::complex &orig) { re=orig.real(); im=orig.imag(); return *this; } /*! Sets the number to (\a orig, 0). */ xcomplex &operator= (const T &orig) { re=orig; im=0; return *this; } /*! Adds \a b to \a *this. */ xcomplex &operator+= (const xcomplex &b) { re+=b.re; im+=b.im; return *this; } /*! Subtracts \a b from \a *this. */ xcomplex &operator-= (const xcomplex &b) { re-=b.re; im-=b.im; return *this; } /*! Multiplies \a *this by \a b. */ xcomplex &operator*= (const xcomplex &b) { T tr=re*b.re-im*b.im, ti=re*b.im+im*b.re; re=tr; im=ti; return *this; } /*! Divides \a *this by \a b. */ xcomplex &operator/= (const xcomplex &b) { std::complex tmp=*this; tmp /= std::complex(b); *this=tmp; return *this; } /*! Multiplies \a *this by \a fact. */ xcomplex &operator*= (const T &fact) { re*=fact; im*=fact; return *this; } /*! Divides \a *this by \a div. */ xcomplex &operator/= (const T &div) { re/=div; im/=div; return *this; } /*! Returns \a *this * \a fact. */ xcomplex operator* (const T &fact) const { return xcomplex (re*fact,im*fact); } /*! Returns \a *this * \a b. */ xcomplex operator* (const xcomplex &b) const { return xcomplex (re*b.re-im*b.im, re*b.im+im*b.re); } /*! Returns \a *this / \a b. */ xcomplex operator/ (const xcomplex &b) const { return xcomplex(std::complex(*this)/std::complex(b)); } /*! Returns \a *this / \a div. */ xcomplex operator/ (const T &div) const { return xcomplex (re/div,im/div); } /*! Returns \a *this + \a b. */ xcomplex operator+ (const xcomplex &b) const { return xcomplex (re+b.re, im+b.im); } /*! Returns \a *this - \a b. */ xcomplex operator- (const xcomplex &b) const { return xcomplex (re-b.re, im-b.im); } /*! Returns \a -(*this) */ xcomplex operator- () const { return xcomplex (-re,-im); } /*! Flips the signs of both components. */ void Negate() { re=-re; im=-im; } /*! Flips the signs of the imaginary component. */ void Conjugate() { im=-im; } /*! Multiplies the number by exp(i*\a angle) */ void Rotate(T angle) { T ca=cos(angle), sa=sin(angle); T tmp=re; re=tmp*ca-im*sa; im=tmp*sa+im*ca; } /*! Returns the complex conjugate of \a *this. */ xcomplex conj() const { return xcomplex (re,-im); } /*! Returns \a *this*i. */ xcomplex times_i() const { return xcomplex (-im,re); } /*! Returns the norm of \a *this. */ T norm() const { return re*re + im*im; } }; /*! Returns the complex conjugate of \a num. \relates xcomplex */ template inline xcomplex conj (const xcomplex &num) { return xcomplex (num.re, -num.im); } /*! Returns the norm of \a num. \relates xcomplex */ template inline T norm (const xcomplex &num) { return num.re*num.re + num.im*num.im; } /*! Returns the absolute value of \a num. \relates xcomplex */ template inline T abs (const xcomplex &num) { using namespace std; return abs(complex(num)); } /*! Returns the exponential of \a num. \relates xcomplex */ template inline xcomplex exp (const xcomplex &num) { using namespace std; return xcomplex(exp(complex(num))); } /*! Returns \a f1*f2. \relates xcomplex */ template inline xcomplex operator* (const T &f1, const xcomplex &f2) { return xcomplex (f1*f2.re, f1*f2.im); } /*! Returns \a f1/f2. \relates xcomplex */ template inline xcomplex operator/ (const T &f1, const xcomplex &f2) { return xcomplex(f1)/f2; } /*! Writes \a val to \a os. \relates xcomplex */ template inline std::ostream &operator<< (std::ostream &os, const xcomplex &val) { os << "(" << val.re << "," << val.im << ")"; return os; } typedef xcomplex dcomplex; typedef xcomplex fcomplex; /*! \} */ #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/share_utils.h0000650000175000017530000000533012255154051027336 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file share_utils.h * Various convenience functions for subdividing tasks into chunks * * Copyright (C) 2002-2011 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_SHARE_UTILS_H #define PLANCK_SHARE_UTILS_H #include "datatypes.h" /*! Divides the index range [\a glo; \a ghi) into \a nshares approximately equal parts, and returns the sub-range [\a lo; \a hi) of the part with the number \a myshare (first part has index 0). */ inline void calcShareGeneral (int64 glo, int64 ghi, int64 nshares, int64 myshare, int64 &lo, int64 &hi) { int64 nwork = ghi-glo; int64 nbase = nwork/nshares; int64 additional = nwork%nshares; lo = glo+myshare*nbase + ((myshare=s_full) return false; start=offset; size=min(s_chunk,s_full-offset); offset+=s_chunk; return true; } }; #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/ls_image.cc0000650000175000017530000001440512255154051026735 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Classes for creation and output of image files * * Copyright (C) 2003-2012 Max-Planck-Society * Author: Martin Reinecke */ #include #include #include "ls_image.h" #include "bstream.h" #include "font_data.inc" #include "string_utils.h" #include "share_utils.h" using namespace std; const MP_Font medium_bold_font = { 0, 128, 7, 13, medium_bold_font_data }; const MP_Font giant_font = { 0, 128, 9, 15, giant_font_data }; void Palette::setPredefined (int num) { fv.clear(); cv.clear(); switch(num) { case 0: add(0,Colour(0,0,0)); add(1,Colour(1,1,1)); break; case 1: add(0,Colour(0,0,0)); add(0.4f,Colour(0,0,0.5f)); add(0.75f,Colour(0,0.6f,1)); add(1,Colour(1,1,1)); break; case 4: add(0,Colour(0,0,.5f)); add(0.15f,Colour(0,0,1)); add(0.4f,Colour(0,1,1)); add(0.7f,Colour(1,1,0)); add(0.9f,Colour(1,.33f,0)); add(1,Colour(.5f,0,0)); break; default: planck_fail("Palette #"+dataToString(num)+" not yet supported."); } } void LS_Image::write_char (int xpos, int ypos, const Colour &col, char c, int scale) { planck_assert ((c>=font.offset) && (c &px, tsize begin, tsize end, bostream &file) { chunkMaker cm (end-begin,128); uint64 cbeg, csz; while (cm.getNext(cbeg,csz)) { file << uint8(csz-1+128); file << px[begin].b << px[begin].g << px[begin].r; } } void write_unequal_range (const arr &px, tsize begin, tsize end, bostream &file) { chunkMaker cm (end-begin,128); uint64 cbeg, csz; while (cm.getNext(cbeg,csz)) { file << uint8(csz-1); for (tsize cnt=begin+cbeg; cnt< begin+cbeg+csz; ++cnt) file << px[cnt].b << px[cnt].g << px[cnt].r; } } } // unnamed namespace void LS_Image::write_TGA_rle(const string &file) const { ofstream out(file.c_str(), ios_base::out | ios_base::binary); planck_assert(out, "could not create file '" + file + "'"); tsize xres=pixel.size1(), yres=pixel.size2(); bostream bo(out); const uint8 header[18] = { 0, 0, 10, 0, 0, 0, 0, 0, 0, 0, 0, 0, uint8(xres%256), uint8(xres/256), uint8(yres%256), uint8(yres/256), 24, 32}; bo.put(header,18); for (tsize y=0; y px(xres); for (tsize x=0; x *data) { complex_plan_forward(plan,&(data->re)); } void backward (xcomplex *data) { complex_plan_backward(plan,&(data->re)); } void forward (arr >&data) { forward(&(data[0].re)); } void backward (arr >&data) { backward(&(data[0].re)); } }; class rfft { private: tsize n; real_plan plan; public: rfft () : n(0), plan(0) {} rfft (const rfft &orig) : n(orig.n), plan(copy_real_plan(orig.plan)) {} rfft (tsize size_) : n(size_), plan(make_real_plan(size_)) {} ~rfft () { if (plan!=0) kill_real_plan (plan); } rfft &operator=(const rfft &orig) { if (n!=orig.n) { if (plan!=0) kill_real_plan (plan); n=orig.n; plan = copy_real_plan(orig.plan); } return *this; } void Set (tsize size_) { if (n==size_) return; if (plan!=0) kill_real_plan (plan); n=size_; plan=make_real_plan(size_); } tsize size() const { return n; } void forward_fftpack (double *data) { real_plan_forward_fftpack(plan,data); } void backward_fftpack (double *data) { real_plan_backward_fftpack(plan,data); } void forward_fftpack (arr &data) { forward_fftpack(&(data[0])); } void backward_fftpack (arr &data) { backward_fftpack(&(data[0])); } void forward_c (arr >&data) { real_plan_forward_c(plan,&(data[0].re)); } void backward_c (arr >&data) { real_plan_backward_c(plan,&(data[0].re)); } }; #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/paramfile.cc0000654000175000017530000001332512264023644027124 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Class for parsing parameter files * * Copyright (C) 2003-2011 Max-Planck-Society * Authors: Martin Reinecke, Reinhard Hell */ #include #include "paramfile.h" #include "string_utils.h" using namespace std; string paramfile::get_valstr(const string &key) const { params_type::const_iterator loc=params.find(key); if (loc!=params.end()) return loc->second; planck_fail ("Cannot find the key '" + key + "'."); } bool paramfile::param_unread (const string &key) const { return (read_params.find(key)==read_params.end()); } paramfile::paramfile (const string &filename, bool verbose_) : verbose(verbose_) { parse_file (filename, params); } paramfile::paramfile (const params_type &par, bool verbose_) : params (par), verbose(verbose_) {} paramfile::~paramfile() { if (verbose) for (params_type::const_iterator loc=params.begin(); loc!=params.end(); ++loc) if (param_unread(loc->first)) cout << "Parser warning: unused parameter '" << loc->first << "'" << endl; } bool paramfile::param_present(const string &key) const { return (params.find(key)!=params.end()); } void paramfile::findhelper (const string &key, const string &value, NDT type, bool deflt) const { string output = value; if (type==NAT_STRING) output = "'"+output+"'"; if (verbose && param_unread(key)) cout << "Parser: " << key << " = " << output << (deflt ? " " : "") << endl; read_params.insert(key); } template T paramfile::find (const string &key) const { T result = stringToData(get_valstr(key)); findhelper (key, dataToString(result), nativeType(), false); return result; } template unsigned char paramfile::find (const string &key) const; template signed char paramfile::find (const string &key) const; template unsigned short paramfile::find (const string &key) const; template short paramfile::find (const string &key) const; template unsigned int paramfile::find (const string &key) const; template int paramfile::find (const string &key) const; template unsigned long paramfile::find (const string &key) const; template long paramfile::find (const string &key) const; template unsigned long long paramfile::find (const string &key) const; template long long paramfile::find (const string &key) const; template float paramfile::find (const string &key) const; template double paramfile::find (const string &key) const; template long double paramfile::find (const string &key) const; template bool paramfile::find (const string &key) const; template string paramfile::find (const string &key) const; template T paramfile::find (const string &key, const T &deflt) { if (param_present(key)) return find(key); string sdeflt=dataToString(deflt); findhelper (key, sdeflt, nativeType(), true); params[key]=sdeflt; return deflt; } template unsigned char paramfile::find (const string &key, const unsigned char &deflt); template signed char paramfile::find (const string &key, const signed char &deflt); template unsigned short paramfile::find (const string &key, const unsigned short &deflt); template short paramfile::find (const string &key, const short &deflt); template unsigned int paramfile::find (const string &key, const unsigned int &deflt); template int paramfile::find (const string &key, const int &deflt); template unsigned long paramfile::find (const string &key, const unsigned long &deflt); template long paramfile::find (const string &key, const long &deflt); template unsigned long long paramfile::find (const string &key, const unsigned long long &deflt); template long long paramfile::find (const string &key, const long long &deflt); template float paramfile::find (const string &key, const float &deflt); template double paramfile::find (const string &key, const double &deflt); template long double paramfile::find (const string &key, const long double &deflt); template bool paramfile::find (const string &key, const bool &deflt); template string paramfile::find (const string &key, const string &deflt); void paramfile::setParamString (const string &key, const string &value) { if (param_present(key)) { if (params[key]!=value) { if (verbose) cout << "Parser: altering value of key '"<=2,"incorrect command line format"); if ((argc==2) && (string(argv[1]).find("=")==string::npos)) return paramfile(argv[1],verbose); map pmap; parse_cmdline_equalsign(argc,argv,pmap); return paramfile(pmap,verbose); } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/rangeset.h0000654000175000017530000002266212271533767026654 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file rangeset.h * Class for storing sets of ranges of integer numbers * * Copyright (C) 2011-2013 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_RANGESET_H #define PLANCK_RANGESET_H #include #include #include #include #include "datatypes.h" #include "error_handling.h" /*! Class for storing sets of ranges of integer numbers */ template class rangeset { private: typedef std::vector rtype; typedef typename rtype::iterator iterator; typedef typename rtype::const_iterator c_iterator; rtype r; /*! Returns the index of the last number in \c r which is <= \a val. If \a val is smaller than all numbers in \c r, returns -1. */ tdiff iiv (const T &val) const { return tdiff(std::upper_bound(r.begin(),r.end(),val)-r.begin())-1; } void addRemove (T a, T b, tdiff v) { tdiff pos1=iiv(a), pos2=iiv(b); if ((pos1>=0) && (r[pos1]==a)) --pos1; // first to delete is at pos1+1; last is at pos2 bool insert_a = (pos1&1)==v; bool insert_b = (pos2&1)==v; int rmstart=pos1+1+(insert_a ? 1 : 0); int rmend =pos2-(insert_b?1:0); planck_assert((rmend-rmstart)&1,"cannot happen"); if (insert_a && insert_b && (pos1+1>pos2)) // insert { r.insert(r.begin()+pos1+1,2,a); r[pos1+2]=b; } else { if (insert_a) r[pos1+1]=a; if (insert_b) r[pos2]=b; r.erase(r.begin()+rmstart,r.begin()+rmend+1); } } static void generalUnion (const rtype &a, const rtype &b, bool flip_a, bool flip_b, rtype &c) { planck_assert((&c!=&a)&&(&c!=&b), "cannot overwrite the rangeset"); c.clear(); bool state_a=flip_a, state_b=flip_b, state_res=state_a||state_b; tsize ia=0, ea=a.size(), ib=0, eb=b.size(); bool runa = ia!=ea, runb = ib!=eb; while(runa||runb) { bool adv_a=false, adv_b=false; T val,va=T(),vb=T(); if (runa) va = a[ia]; if (runb) vb = b[ib]; if (runa && (!runb || (va<=vb))) { adv_a=true; val=va; } if (runb && (!runa || (vb<=va))) { adv_b=true; val=vb; } if (adv_a) { state_a=!state_a; ++ia; runa = ia!=ea; } if (adv_b) { state_b=!state_b; ++ib; runb = ib!=eb; } if ((state_a||state_b)!=state_res) { c.push_back(val); state_res = !state_res; } } } public: /*! Removes all rangeset entries. */ void clear() { r.clear(); } /*! Reserves space for \a n ranges. */ void reserve(tsize n) { r.reserve(2*n); } /*! Returns the current number of ranges. */ tsize size() const { return r.size()>>1; } /*! Returns the current vector of ranges. */ const rtype &data() const { return r; } /*! Returns the first value of range \a i. */ const T &ivbegin (tdiff i) const { return r[2*i]; } /*! Returns the one-past-last value of range \a i. */ const T &ivend (tdiff i) const { return r[2*i+1]; } /*! Returns the length of range \a i. */ T ivlen (tdiff i) const { return r[2*i+1]-r[2*i]; } /*! Appends \a [v1;v2[ to the rangeset. \a v1 must be larger than the minimum of the last range in the rangeset. */ void append(const T &v1, const T &v2) { if (v2<=v1) return; if ((!r.empty()) && (v1<=r.back())) { planck_assert (v1>=r[r.size()-2],"bad append operation"); if (v2>r.back()) r.back()=v2; } else { r.push_back(v1); r.push_back(v2); } } /*! Appends \a [v;v+1[ to the rangeset. \a v must be larger than the minimum of the last range in the rangeset. */ void append(const T &v) { append(v,v+1); } /*! Appends \a other to the rangeset. All values in \a other must be larger than the minimum of the last range in the rangeset. */ void append (const rangeset &other) { for (tsize j=0; j=r.back())) { r.clear(); return; } // no overlap if ((a<=r[0]) && (b>=r.back())) return; // full rangeset in interval tdiff pos2=iiv(b); if ((pos2>=0) && (r[pos2]==b)) --pos2; bool insert_b = (pos2&1)==0; r.erase(r.begin()+pos2+1,r.end()); if (insert_b) r.push_back(b); tdiff pos1=iiv(a); bool insert_a = (pos1&1)==0; if (insert_a) r[pos1--]=a; if (pos1>=0) r.erase(r.begin(),r.begin()+pos1+1); } /*! Returns the total number of elements in the rangeset. */ T nval() const { T result=T(0); for (tsize i=0; i &res) const { res.clear(); res.reserve(nval()); for (tsize i=0; i>1; } /*! Returns \a true if the rangeset is identical to \a other, else \a false. */ bool equals (const rangeset &other) const { return r==other.data(); } /*! Returns \a true if the rangeset contains all values in the range \a [a;b[, else \a false. */ bool containsAll (T a,T b) const { tdiff res=iiv(a); if (res&1) return false; return (b<=r[res+1]); } /*! Returns \a true if the rangeset contains the value \a v, else \a false. */ bool contains (T v) const { return !(iiv(v)&1); } /*! Returns \a true if the rangeset contains all values stored in \a other, else \a false. */ bool contains (const rangeset &other) const { tsize im=0, em=r.size(); for (tsize i=0; ia) || (r[im+1] inline std::ostream &operator<< (std::ostream &os, const rangeset &rs) { os << "{ "; for (tsize i=0; ipi) { phi+=pi; theta=twopi-theta; } } void pointing::normalize() { normalize_theta(); phi=fmodulo(phi,twopi); } ostream &operator<< (ostream &os, const pointing &p) { os << p.theta << ", " << p.phi << std::endl; return os; } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/geom_utils.h0000650000175000017530000000554712255154051027175 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file geom_utils.h * Geometric utility functions. * * Copyright (C) 2003-2011 Max-Planck-Society * \author Martin Reinecke * \author Reinhard Hell */ #ifndef PLANCK_GEOM_UTILS_H #define PLANCK_GEOM_UTILS_H #include "math_utils.h" #include "vec3.h" template class arr; /*! Returns the orientation when looking from point \a loc on the unit sphere in the direction \a dir. \a loc must be normalized. The result ranges from -pi to pi, is 0 for North and pi/2 for West, i.e. the angle is given in mathematically positive sense. If \a loc is the North or South pole, the returned angle is \a atan2(dir.y,dir.x). */ inline double orientation (const vec3 &loc, const vec3 &dir) { // FIXME: here is still optimization potential if (loc.x==0 && loc.y==0) return (loc.z>0) ? safe_atan2(dir.y,-dir.x) : safe_atan2(dir.y,dir.x); vec3 east (-loc.y, loc.x, 0); vec3 north = crossprod(loc,east); return safe_atan2(-dotprod(dir,east),dotprod(dir,north)); } /*! Returns the angle between \a v1 and \a v2 in radians. */ inline double v_angle (const vec3 &v1, const vec3 &v2) { using namespace std; return atan2 (crossprod(v1,v2).Length(), dotprod(v1,v2)); } /*! Returns the cosine of the angle between the two points on the sphere defined by (\a z1, \a phi1) and (\a z2, \a phi2), respectively. \a z is the cosine of the colatitude, and \a phi is the longitude. */ inline double cosdist_zphi (double z1, double phi1, double z2, double phi2) { using namespace std; return z1*z2+cos(phi1-phi2)*sqrt((1.-z1*z1)*(1.-z2*z2)); } /*! Finds the smallest enclosing cone for a point set on the sphere according to Barequet & Elber: Information Processing Letters 93(2005), p.83. All points are expected to be passed as unit vectors. The enclosing cone must have an opening angle &point, vec3 ¢er, double &cosrad); #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/string_utils.cc0000650000175000017530000002374212255154051027707 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * This file contains the implementation of various convenience functions * used by the Planck LevelS package. * * Copyright (C) 2002-2012 Max-Planck-Society * Author: Martin Reinecke */ #include #include #include #include #include #include #include #include "string_utils.h" using namespace std; string trim (const string &orig) { string::size_type p1=orig.find_first_not_of(" \t"); if (p1==string::npos) return ""; string::size_type p2=orig.find_last_not_of(" \t"); return orig.substr(p1,p2-p1+1); } template string dataToString (const T &x) { ostringstream strstrm; strstrm << x; return trim(strstrm.str()); } template<> string dataToString (const bool &x) { return x ? "T" : "F"; } template<> string dataToString (const string &x) { return trim(x); } template<> string dataToString (const float &x) { ostringstream strstrm; strstrm << setprecision(8) << x; return trim(strstrm.str()); } template<> string dataToString (const double &x) { ostringstream strstrm; strstrm << setprecision(16) << x; return trim(strstrm.str()); } template<> string dataToString (const long double &x) { ostringstream strstrm; strstrm << setprecision(25) << x; return trim(strstrm.str()); } template string dataToString (const signed char &x); template string dataToString (const unsigned char &x); template string dataToString (const short &x); template string dataToString (const unsigned short &x); template string dataToString (const int &x); template string dataToString (const unsigned int &x); template string dataToString (const long &x); template string dataToString (const unsigned long &x); template string dataToString (const long long &x); template string dataToString (const unsigned long long &x); string intToString(int64 x, tsize width) { ostringstream strstrm; (x>=0) ? strstrm << setw(width) << setfill('0') << x : strstrm << "-" << setw(width-1) << setfill('0') << -x; string res = strstrm.str(); planck_assert(res.size()==width,"number too large"); return trim(res); } namespace { void end_stringToData (const string &x, const char *tn, istringstream &strstrm) { string error = string("conversion error in stringToData<")+tn+">(\""+x+"\")"; planck_assert (strstrm,error); string rest; strstrm >> rest; // rest=trim(rest); planck_assert (rest.length()==0,error); } } // unnamed namespace template void stringToData (const string &x, T &value) { istringstream strstrm(x); strstrm >> value; end_stringToData (x,type2typename(),strstrm); } template<> void stringToData (const string &x, string &value) { value = trim(x); } template<> void stringToData (const string &x, bool &value) { const char *x2 = x.c_str(); const char *fval[] = {"F","f","n","N","false",".false.","FALSE",".FALSE." }; const char *tval[] = {"T","t","y","Y","true",".true.","TRUE",".TRUE." }; for (tsize i=0; i< sizeof(fval)/sizeof(fval[0]); ++i) if (strcmp(x2,fval[i])==0) { value=false; return; } for (tsize i=0; i< sizeof(tval)/sizeof(tval[0]); ++i) if (strcmp(x2,tval[i])==0) { value=true; return; } planck_fail("conversion error in stringToData(\""+x+"\")"); } template void stringToData (const string &x, signed char &value); template void stringToData (const string &x, unsigned char &value); template void stringToData (const string &x, short &value); template void stringToData (const string &x, unsigned short &value); template void stringToData (const string &x, int &value); template void stringToData (const string &x, unsigned int &value); template void stringToData (const string &x, long &value); template void stringToData (const string &x, unsigned long &value); template void stringToData (const string &x, long long &value); template void stringToData (const string &x, unsigned long long &value); template void stringToData (const string &x, float &value); template void stringToData (const string &x, double &value); template void stringToData (const string &x, long double &value); bool equal_nocase (const string &a, const string &b) { if (a.size()!=b.size()) return false; for (tsize m=0; m &dict) { int lineno=0; dict.clear(); ifstream inp(filename.c_str()); planck_assert (inp,"Could not open parameter file '"+filename+"'."); while (inp) { string line; getline(inp, line); ++lineno; // remove potential carriage returns at the end of the line line=line.substr(0,line.find("\r")); line=line.substr(0,line.find("#")); line=trim(line); if (line.size()>0) { string::size_type eqpos=line.find("="); if (eqpos!=string::npos) { string key=trim(line.substr(0,eqpos)), value=trim(line.substr(eqpos+1,string::npos)); if (key=="") cerr << "Warning: empty key in '" << filename << "', line " << lineno << endl; else { if (dict.find(key)!=dict.end()) cerr << "Warning: key '" << key << "' multiply defined in '" << filename << "', line " << lineno << endl; dict[key]=value; } } else cerr << "Warning: unrecognized format in '" << filename << "', line " << lineno << ":\n" << line << endl; } } } namespace { bool isParam (const string &s) { if (s.size()<2) return false; if (s[0]!='-') return false; return !(isdigit(s[1]) || (s[1]=='.')); } } // unnamed namespace void parse_cmdline_classic (int argc, const char **argv, const vector &leading_args, map &dict) { dict.clear(); planck_assert(tsize(argc)>leading_args.size(),"not enough arguments"); for (tsize i=0; i &dict) { parse_cmdline_classic (argc, argv, vector(), dict); } void parse_cmdline_equalsign (int argc, const char **argv, const vector &leading_args, map &dict) { dict.clear(); planck_assert(tsize(argc)>leading_args.size(),"not enough arguments"); for (tsize i=0; i0) { string::size_type eqpos=arg.find("="); if (eqpos!=string::npos) { string key=trim(arg.substr(0,eqpos)), value=trim(arg.substr(eqpos+1,string::npos)); if (key=="") cerr << "Warning: empty key in argument'" << arg << "'" << endl; else { if (dict.find(key)!=dict.end()) cerr << "Warning: key '" << key << "' multiply defined" << endl; dict[key]=value; } } else cerr << "Warning: unrecognized format in argument '" << arg << "'" << endl; } } } void parse_cmdline_equalsign (int argc, const char **argv, map &dict) { parse_cmdline_equalsign (argc, argv, vector(), dict); } namespace { template void split (istream &stream, vector &list) { list.clear(); while (stream) { string word; stream >> word; planck_assert (stream||stream.eof(), string("error while splitting stream into ") + type2typename() + "components"); if (stream) list.push_back(stringToData(word)); } } } // unnamed namespace template void split (const string &inp, vector &list) { istringstream stream(inp); split (stream,list); } template void split (const string &inp, vector &list); template void split (const string &inp, vector &list); template void split (const string &inp, vector &list); template void split (const string &inp, vector &list); template void split (const string &inp, vector &list); void tokenize (const string &inp, char delim, vector &list) { istringstream stream(inp); string token; list.clear(); while (getline(stream,token,delim)) list.push_back(token); } void parse_words_from_file (const string &filename, vector &words) { words.clear(); ifstream inp(filename.c_str()); planck_assert (inp,"Could not open file '"+filename+"'."); while (inp) { string word; inp>>word; word=trim(word); if (word!="") words.push_back(word); } } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/wigner.cc0000650000175000017530000003721212255154051026451 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file wigner.cc * Several C++ classes for calculating Wigner matrices * * Copyright (C) 2009-2011 Max-Planck-Society * \author Martin Reinecke and others (see individual classes) */ #include "wigner.h" #include "lsconstants.h" using namespace std; void wigner_d_halfpi_risbo_scalar::do_line0 (double *l1, int j) { double xj = pq/j; for (int i=n; i>=1; --i) l1[i] = xj*sqt[j]*(sqt[j-i]*l1[i] - sqt[i]*l1[i-1]); l1[0] = pq*l1[0]; } void wigner_d_halfpi_risbo_scalar::do_line (const double *l1, double *l2, int j, int k) { double xj = pq/j; double t1 = xj*sqt[j-k]; double t2 = xj*sqt[k]; for (int i=n; i>=1; --i) l2[i] = t1 * (sqt[j-i]*l2[i] - sqt[i]*l2[i-1]) +t2 * (sqt[j-i]*l1[i] + sqt[i]*l1[i-1]); l2[0] = sqt[j] * (t2*l1[0]+t1*l2[0]); } wigner_d_halfpi_risbo_scalar::wigner_d_halfpi_risbo_scalar(int lmax) : pq(.5*sqrt(2.)), sqt(2*lmax+1), d(lmax+2,lmax+2), n(-1) { for (tsize m=0; m &wigner_d_halfpi_risbo_scalar::recurse () { ++n; if (n==0) d[0][0] = 1; else if (n==1) { d[0][0] = .5; d[0][1] =-pq; d[1][0] = pq; d[1][1] = 0.; } else { //padding int flip = 1; for (int i=0; i=2; --k) { do_line (d[k-2],d[k-1],2*n-1,k-1); do_line (d[k-1],d[k],2*n,k); } do_line0 (d[0],2*n-1); do_line (d[0],d[1],2*n,1); do_line0 (d[0],2*n); } return d; } void wigner_d_risbo_scalar::do_line0 (double *l1, int j) { double xj = 1./j; l1[j] = -p*l1[j-1]; for (int i=j-1; i>=1; --i) l1[i] = xj*sqt[j]*(q*sqt[j-i]*l1[i] - p*sqt[i]*l1[i-1]); l1[0] = q*l1[0]; } void wigner_d_risbo_scalar::do_line (const double *l1, double *l2, int j, int k) { double xj = 1./j; double t1 = xj*sqt[j-k]*q, t2 = xj*sqt[j-k]*p; double t3 = xj*sqt[k]*p, t4 = xj*sqt[k]*q; l2[j] = sqt[j] * (t4*l1[j-1]-t2*l2[j-1]); for (int i=j-1; i>=1; --i) l2[i] = t1*sqt[j-i]*l2[i] - t2*sqt[i]*l2[i-1] +t3*sqt[j-i]*l1[i] + t4*sqt[i]*l1[i-1]; l2[0] = sqt[j] * (t3*l1[0]+t1*l2[0]); } wigner_d_risbo_scalar::wigner_d_risbo_scalar(int lmax, double ang) : p(sin(ang/2)), q(cos(ang/2)), sqt(2*lmax+1), d(lmax+1,2*lmax+1), n(-1) { for (tsize m=0; m &wigner_d_risbo_scalar::recurse () { ++n; if (n==0) d[0][0] = 1; else if (n==1) { d[0][0] = q*q; d[0][1] = -p*q*sqt[2]; d[0][2] = p*p; d[1][0] = -d[0][1]; d[1][1] = q*q-p*p; d[1][2] = d[0][1]; } else { // padding int sign = (n&1)? -1 : 1; for (int i=0; i<=2*n-2; ++i) { d[n][i] = sign*d[n-2][2*n-2-i]; sign=-sign; } do_line (d[n-1],d[n],2*n-1,n); for (int k=n; k>=2; --k) { do_line (d[k-2],d[k-1],2*n-1,k-1); do_line (d[k-1],d[k],2*n,k); } do_line0 (d[0],2*n-1); do_line (d[0],d[1],2*n,1); do_line0 (d[0],2*n); } return d; } wigner_d_halfpi_risbo_openmp::wigner_d_halfpi_risbo_openmp(int lmax) : pq(.5*sqrt(2.)), sqt(2*lmax+1), d(lmax+2,lmax+2), dd(lmax+2,lmax+2), n(-1) { for (tsize m=0; m &wigner_d_halfpi_risbo_openmp::recurse () { ++n; if (n==0) d[0][0] = 1; else if (n==1) { d.fast_alloc(3,3); d[0][0] = .5; d[0][1] =-pq; d[1][0] = pq; d[1][1] = 0.; } else { //padding int flip = 1; for (int i=0; i &wigner_d_risbo_openmp::recurse () { ++n; if (n==0) d[0][0] = 1; else if (n==1) { d[0][0] = q*q; d[0][1] = -p*q*sqt[2]; d[0][2] = p*p; d[1][0] = -d[0][1]; d[1][1] = q*q-p*p; d[1][2] = d[0][1]; } else { // padding int sign = (n&1)? -1 : 1; for (int i=0; i<=2*n-2; ++i) { d[n][i] = sign*d[n-2][2*n-2-i]; sign=-sign; } for (int j=2*n-1; j<=2*n; ++j) { double xj = 1./j; dd[0][0] = q*d[0][0]; for (int i=1;i &thetas, double epsilon) : eps(epsilon), lmax(lmax_), logsum(2*lmax+1), lc05(thetas.size()), ls05(thetas.size()), flm1(2*lmax+1), flm2(2*lmax+1), cf(maxscale+1-minscale), costh(thetas.size()), xl(lmax+1), thetaflip(thetas.size()), m1(-1234567890), m2(-1234567890), am1(-1234567890), am2(-1234567890), mlo(-1234567890), mhi(-1234567890), fx(lmax+2), result(lmax+1) { planck_assert(lmax>0,"lmax too small"); logsum[0] = 0.; for (tsize m=1; m(m)); for (tsize lm=0; lmpi) theta-=twopi; thetaflip[i]=(theta<0); theta=abs(theta); // now theta is in (0; pi) // tiny adjustments to make sure cos and sin (theta/2) are positive if (theta==0.) theta=1e-16; if (abs_approx(theta,pi,1e-15)) theta=pi-1e-15; costh[i]=cos(theta); lc05[i]=log(cos(0.5L*theta)); ls05[i]=log(sin(0.5L*theta)); } xl[0]=0; for (tsize l=1; l=0) { swap(cosPow, sinPow); preMinus=((mhi-m2)&1); } } else { cosPow = mhi+m1; sinPow = mhi-m1; if (m2<0) { swap(cosPow, sinPow); preMinus=((mhi+m1)&1); } } } const arr &wignergen_scalar::calc (int nth, int &firstl) { calc(nth, firstl, result); return result; } void wignergen_scalar::calc (int nth, int &firstl, arr &resx) const { int l=mhi; const dbl3 *fy = &fx[0]; const double cth = costh[nth]; double *res = &resx[0]; long double logval = prefactor + lc05[nth]*cosPow + ls05[nth]*sinPow; logval *= inv_ln2; int scale = int (logval/large_exponent2)-minscale; double rec1 = 0.; double rec2 = double(exp(ln2*(logval-(scale+minscale)*large_exponent2))); if (preMinus ^ (thetaflip[nth] && ((am1+am2)&1))) rec2 = -rec2; while(scale<0) // iterate until we reach the realm of IEEE numbers { if (++l>lmax) break; rec1 = (cth - fy[l][1])*fy[l][0]*rec2 - fy[l][2]*rec1; if (++l>lmax) break; rec2 = (cth - fy[l][1])*fy[l][0]*rec1 - fy[l][2]*rec2; while (abs(rec2)>fbig) { rec1 *= fsmall; rec2 *= fsmall; ++scale; } } if (scale<0) { firstl=lmax+1; return; } rec1 *= cf[scale]; rec2 *= cf[scale]; for (;leps) break; rec1 = (cth - fy[l+1][1])*fy[l+1][0]*rec2 - fy[l+1][2]*rec1; if (abs(rec1)>eps) { swap(rec1,rec2); ++l; break; } rec2 = (cth - fy[l+2][1])*fy[l+2][0]*rec1 - fy[l+2][2]*rec2; } if ((abs(rec2)<=eps) && (++l<=lmax)) { rec1 = (cth - fy[l][1])*fy[l][0]*rec2 - fy[l][2]*rec1; swap (rec1,rec2); } firstl = l; if (l>lmax) return; res[l]=rec2; for (;llmax) break; res[l] = rec1 = (cth - fy[l][1])*fy[l][0]*rec2 - fy[l][2]*rec1; if (++l>lmax) break; res[l] = rec2 = (cth - fy[l][1])*fy[l][0]*rec1 - fy[l][2]*rec2; } } #ifdef __SSE2__ #define RENORMALIZE \ do \ { \ double rec1a, rec1b, rec2a, rec2b, cfa, cfb; \ rec1.writeTo(rec1a,rec1b); rec2.writeTo(rec2a,rec2b); \ corfac.writeTo(cfa,cfb); \ while (abs(rec2a)>fbig) \ { \ rec1a*=fsmall; rec2a*=fsmall; ++scale1; \ cfa = (scale1<0) ? 0. : cf[scale1]; \ } \ while (abs(rec2b)>fbig) \ { \ rec1b*=fsmall; rec2b*=fsmall; ++scale2; \ cfb = (scale2<0) ? 0. : cf[scale2]; \ } \ rec1.readFrom(rec1a,rec1b); rec2.readFrom(rec2a,rec2b); \ corfac.readFrom(cfa,cfb); \ } \ while(0) #define GETPRE(prea,preb,lv) \ prea=(cth-fy[lv][1])*fy[lv][0]; \ preb=fy[lv][2]; #define NEXTSTEP(prea,preb,prec,pred,reca,recb,lv) \ { \ prec = fy[lv][1]; \ preb *= reca; \ prea *= recb; \ V2df t0 (fy[lv][0]); \ prec = cth-prec; \ pred = fy[lv][2]; \ reca = prea-preb; \ prec *= t0; \ } const arr_align &wignergen::calc (int nth1, int nth2, int &firstl) { calc(nth1, nth2, firstl, result2); return result2; } void wignergen::calc (int nth1, int nth2, int &firstl, arr_align &resx) const { int l=mhi; const dbl3 *fy = &fx[0]; const V2df cth(costh[nth1],costh[nth2]); V2df *res = &resx[0]; long double logval1 = prefactor + lc05[nth1]*cosPow + ls05[nth1]*sinPow, logval2 = prefactor + lc05[nth2]*cosPow + ls05[nth2]*sinPow; logval1 *= inv_ln2; logval2 *= inv_ln2; int scale1 = int (logval1/large_exponent2)-minscale, scale2 = int (logval2/large_exponent2)-minscale; V2df rec1(0.); double tr1 = double(exp(ln2*(logval1-(scale1+minscale)*large_exponent2))), tr2 = double(exp(ln2*(logval2-(scale2+minscale)*large_exponent2))); if (preMinus ^ (thetaflip[nth1] && ((am1+am2)&1))) tr1 = -tr1; if (preMinus ^ (thetaflip[nth2] && ((am1+am2)&1))) tr2 = -tr2; V2df rec2(tr1,tr2); V2df corfac ((scale1<0) ? 0. : cf[scale1], (scale2<0) ? 0. : cf[scale2]); V2df eps2(eps); V2df fbig2(fbig); V2df pre0,pre1,pre2,pre3; GETPRE(pre0,pre1,l+1) if ((scale1<0) && (scale2<0)) { while (true) { if (++l>lmax) break; NEXTSTEP(pre0,pre1,pre2,pre3,rec1,rec2,l+1) if (++l>lmax) break; NEXTSTEP(pre2,pre3,pre0,pre1,rec2,rec1,l+1) if (any(abs(rec2).gt(fbig2))) { RENORMALIZE; if ((scale1>=0) || (scale2>=0)) break; } } } if (l<=lmax) { GETPRE(pre0,pre1,l+1) while (true) { V2df t1; res[l]=t1=rec2*corfac; if (any(abs(t1).gt(eps2))) break; if (++l>lmax) break; NEXTSTEP(pre0,pre1,pre2,pre3,rec1,rec2,l+1) res[l]=t1=rec1*corfac; if (any(abs(t1).gt(eps2))) { swap(rec1,rec2); break; } if (++l>lmax) break; NEXTSTEP(pre2,pre3,pre0,pre1,rec2,rec1,l+1) if (any(abs(rec2).gt(fbig2))) RENORMALIZE; } } firstl=l; if (l>lmax) return; GETPRE(pre0,pre1,l+1) while (true) { V2df t1; res[l]=t1=rec2*corfac; if (all(abs(t1).ge(eps2))) break; if (++l>lmax) break; NEXTSTEP(pre0,pre1,pre2,pre3,rec1,rec2,l+1) res[l]=t1=rec1*corfac; if (all(abs(t1).ge(eps2))) { swap(rec1,rec2); break; } if (++l>lmax) break; NEXTSTEP(pre2,pre3,pre0,pre1,rec2,rec1,l+1) if (any(abs(rec2).gt(fbig2))) RENORMALIZE; } if (l>lmax) return; rec1*=corfac; rec2*=corfac; GETPRE(pre0,pre1,l+1) for (;l1.); // close to a pole return (((sqrt(delta)-epsPow)*cosm1m2/abs(sth)) > lmax); } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/fitshandle.cc0000650000175000017530000005525212255154051027303 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * This file contains the implementation of the FITS I/O helper class * used by the Planck LevelS package. * * Copyright (C) 2002-2011 Max-Planck-Society * Author: Martin Reinecke */ #include #include #include #include "fitsio.h" #include "fitshandle.h" #include "string_utils.h" #define FPTR (static_cast (fptr)) #define OFPTR (static_cast (orig.fptr)) using namespace std; namespace { template inline int fitsType(); template<> inline int fitsType () { return TFLOAT; } template<> inline int fitsType() { return TDOUBLE; } int type2bitpix (PDT type) { switch (type) { case PLANCK_FLOAT32: return FLOAT_IMG; case PLANCK_FLOAT64: return DOUBLE_IMG; default: planck_fail ("unsupported component type"); } } /*! Converts a FITS type code (i.e. the data type of a FITS column) to the corresponding Planck type code. */ PDT ftc2type (int ftc) { switch (ftc) { case TLOGICAL : return PLANCK_BOOL; case TBYTE : return PLANCK_INT8; case TSHORT : return PLANCK_INT16; case TINT : case TINT32BIT: return PLANCK_INT32; case TLONGLONG: return PLANCK_INT64; case TFLOAT : return PLANCK_FLOAT32; case TDOUBLE : return PLANCK_FLOAT64; case TSTRING : return PLANCK_STRING; default: planck_fail ("unsupported component type"); } } /*! Converts a Planck type code to the corresponding FITS type code (i.e. the data type of a FITS column). */ int type2ftc (PDT type) { switch (type) { case PLANCK_BOOL : return TLOGICAL; case PLANCK_INT8 : case PLANCK_UINT8 : return TBYTE; case PLANCK_INT16 : return TSHORT; case PLANCK_INT32 : return TINT; case PLANCK_INT64 : return TLONGLONG; case PLANCK_FLOAT32: return TFLOAT; case PLANCK_FLOAT64: return TDOUBLE; case PLANCK_STRING : return TSTRING; default: planck_fail ("unsupported component type"); } } const char *type2fitschar (PDT type) { switch (type) { case PLANCK_BOOL : return "L"; case PLANCK_FLOAT32: return "E"; case PLANCK_FLOAT64: return "D"; case PLANCK_INT8 : case PLANCK_UINT8 : return "B"; case PLANCK_INT16 : return "I"; case PLANCK_INT32 : return "J"; case PLANCK_INT64 : return "K"; case PLANCK_STRING : return "A"; default: planck_fail(string("unknown data type ")+type2string(type)); } } const char *type2asciiform (PDT type) { switch (type) { case PLANCK_FLOAT32: return "E14.7"; case PLANCK_FLOAT64: return "D23.15"; case PLANCK_UINT8 : return "I3"; case PLANCK_INT8 : return "I4"; case PLANCK_INT16 : return "I6"; case PLANCK_INT32 : return "I11"; case PLANCK_INT64 : return "I22"; default: planck_fail(string("unknown data type ")+type2string(type)); } } string fixkey (const string &key) { for (tsize m=0; mcolumns_.size())) return false; return true; } bool fitshandle::image_hdu () const { return hdutype_==IMAGE_HDU; } void fitshandle::init_image() { int naxis; fits_get_img_type (FPTR, &bitpix_, &status); fits_get_img_dim (FPTR, &naxis, &status); check_errors(); arr naxes(naxis); fits_get_img_sizell (FPTR, naxis, &naxes[0], &status); for (long m=0; m(data), &status); nrows_ = max(nrows_,offset+ndata); check_errors(); } void fitshandle::getKeyHelper(const string &name) const { if (status==KEY_NO_EXIST) { fits_clear_errmsg(); status=0; planck_fail("fitshandle::get_key(): key '"+name+"' not found"); } check_errors(); } fitshandle::fitshandle () : status(0), fptr(0), hdutype_(INVALID), bitpix_(INVALID), nrows_(0) {} fitshandle::~fitshandle() { clean_all(); } void fitshandle::open (const string &fname) { clean_all(); fitsfile *ptr; fits_open_file(&ptr, fname.c_str(), READONLY, &status); fptr=ptr; check_errors(); init_data(); } void fitshandle::create (const string &fname) { clean_all(); fitsfile *ptr; fits_create_file(&ptr, fname.c_str(), &status); fptr=ptr; fits_write_imghdr(FPTR, 8, 0, 0, &status); // insert empty PHDU fits_write_date(FPTR, &status); check_errors(); init_data(); } // static void fitshandle::delete_file (const string &name) { fitsfile *ptr; int stat = 0; fits_open_file(&ptr, name.c_str(), READWRITE, &stat); fits_delete_file(ptr, &stat); if (stat==0) return; char msg[81]; fits_get_errstatus (stat, msg); cerr << msg << endl; while (fits_read_errmsg(msg)) cerr << msg << endl; planck_fail("FITS error"); } string fitshandle::fileName() const { planck_assert(connected(),"handle not connected to a file"); char *fname = new char[2048]; fits_file_name(FPTR, fname, &status); check_errors(); string result(fname); delete[] fname; return result; } void fitshandle::goto_hdu (int hdu) { int curhdu; fits_get_hdu_num(FPTR,&curhdu); if (curhdu!=hdu) { fits_movabs_hdu(FPTR, hdu, &hdutype_, &status); check_errors(); init_data(); } } int fitshandle::num_hdus () const { int result; fits_get_num_hdus (FPTR, &result, &status); check_errors(); return result; } void fitshandle::insert_bintab (const vector &cols, const string &extname) { clean_data(); int ncol=cols.size(); arr2b ttype(ncol,81), tform(ncol,81), tunit(ncol,81); for (long m=0; m(extname.c_str()), 0, &status); check_errors(); init_data(); } void fitshandle::insert_asctab (const vector &cols, const string &extname) { clean_data(); int ncol=cols.size(); arr2b ttype(ncol,81), tform(ncol,81), tunit(ncol,81); for (long m=0; m(extname.c_str()), &status); check_errors(); init_data(); } void fitshandle::insert_image (PDT type, const vector &Axes) { clean_data(); arr tmpax(Axes.size()); for (long m=0; m void fitshandle::insert_image (PDT type, const arr2 &data) { clean_data(); arr tmpax(2); tmpax[0] = data.size2(); tmpax[1] = data.size1(); fits_insert_imgll (FPTR, type2bitpix(type), 2, &tmpax[0], &status); arr2 &tmparr = const_cast &> (data); fits_write_img (FPTR, fitsType(), 1, tmpax[0]*tmpax[1], &tmparr[0][0], &status); check_errors(); init_data(); } template void fitshandle::insert_image (PDT type, const arr2 &data); template void fitshandle::insert_image (PDT type, const arr2 &data); void fitshandle::write_checksum() { planck_assert(connected(),"handle not connected to a file"); fits_write_chksum (FPTR, &status); check_errors(); } const vector &fitshandle::axes() const { planck_assert(image_hdu(),"not connected to an image"); return axes_; } const string &fitshandle::colname(int i) const { planck_assert(table_hdu(i),"incorrect FITS table access"); return columns_[i-1].name(); } const string &fitshandle::colunit(int i) const { planck_assert(table_hdu(i),"incorrect FITS table access"); return columns_[i-1].unit(); } int64 fitshandle::repcount(int i) const { planck_assert(table_hdu(i),"incorrect FITS table access"); return columns_[i-1].repcount(); } PDT fitshandle::coltype(int i) const { planck_assert(table_hdu(i),"incorrect FITS table access"); return columns_[i-1].type(); } int fitshandle::ncols() const { planck_assert(table_hdu(1),"incorrect FITS table access"); return columns_.size(); } int64 fitshandle::nrows() const { planck_assert(table_hdu(1),"incorrect FITS table access"); return nrows_; } int64 fitshandle::nelems(int i) const { planck_assert(table_hdu(i),"incorrect FITS table access"); if (columns_[i-1].type()==PLANCK_STRING) return nrows_; return nrows_*columns_[i-1].repcount(); } int64 fitshandle::efficientChunkSize(int i) const { planck_assert(table_hdu(1),"incorrect FITS table access"); long int res; fits_get_rowsize(FPTR, &res, &status); planck_assert(res>=1,"bad recommended FITS chunk size"); check_errors(); return res*columns_[i-1].repcount(); } void fitshandle::get_all_keys(vector &keys) const { keys.clear(); char card[81]; const char *inclist[] = { "*" }; planck_assert(connected(),"handle not connected to a file"); fits_read_record (FPTR, 0, card, &status); check_errors(); while (true) { fits_find_nextkey (FPTR, const_cast(inclist), 1, 0, 0, card, &status); if (status!=0) break; if (fits_get_keyclass(card)==TYP_USER_KEY) { char keyname[80]; int dummy; fits_get_keyname(card, keyname, &dummy, &status); check_errors(); keys.push_back(trim(keyname)); } check_errors(); } if (status==KEY_NO_EXIST) { fits_clear_errmsg(); status=0; } check_errors(); } void fitshandle::set_key_void (const string &key, const void *value, PDT type, const string &comment) { planck_assert(connected(),"handle not connected to a file"); string key2 = fixkey(key); switch (type) { case PLANCK_INT8: case PLANCK_UINT8: case PLANCK_INT16: case PLANCK_INT32: case PLANCK_INT64: case PLANCK_FLOAT32: case PLANCK_FLOAT64: fits_update_key (FPTR, type2ftc(type), const_cast(key2.c_str()), const_cast(value), const_cast(comment.c_str()), &status); break; case PLANCK_BOOL: { int val = *(static_cast(value)); fits_update_key (FPTR, TLOGICAL, const_cast(key2.c_str()), &val, const_cast(comment.c_str()), &status); break; } case PLANCK_STRING: { string val = *(static_cast(value)); fits_update_key_longstr (FPTR, const_cast(key2.c_str()), const_cast(val.c_str()), const_cast(comment.c_str()), &status); break; } default: planck_fail ("unsupported data type in set_key_void()"); } check_errors(); } void fitshandle::get_key_void (const string &name, void *value, PDT type) const { planck_assert(connected(),"handle not connected to a file"); switch (type) { case PLANCK_INT8: case PLANCK_UINT8: case PLANCK_INT16: case PLANCK_INT32: case PLANCK_INT64: case PLANCK_FLOAT32: case PLANCK_FLOAT64: fits_read_key (FPTR, type2ftc(type), const_cast(name.c_str()), value, 0, &status); getKeyHelper(name); break; case PLANCK_BOOL: { int val; fits_read_key (FPTR, TLOGICAL, const_cast(name.c_str()), &val, 0, &status); getKeyHelper(name); *(static_cast(value))=val; break; } case PLANCK_STRING: { char *tmp=0; fits_read_key_longstr (FPTR, const_cast(name.c_str()), &tmp, 0, &status); getKeyHelper(name); *(static_cast(value))=tmp; if (tmp) free(tmp); break; } default: planck_fail ("unsupported data type in get_key_void()"); } check_errors(); } void fitshandle::delete_key (const string &name) { planck_assert(connected(),"handle not connected to a file"); fits_delete_key (FPTR, const_cast(name.c_str()), &status); check_errors(); } void fitshandle::add_comment(const string &comment) { planck_assert(connected(),"handle not connected to a file"); fits_write_comment(FPTR,const_cast(comment.c_str()),&status); check_errors(); } bool fitshandle::key_present(const string &name) const { char card[81]; planck_assert(connected(),"handle not connected to a file"); fits_read_card(FPTR, const_cast(name.c_str()), card, &status); if (status==KEY_NO_EXIST) { fits_clear_errmsg(); status=0; return false; } check_errors(); return true; } void fitshandle::assert_pdmtype (const string &pdmtype) const { string type; get_key("PDMTYPE",type); if (pdmtype==type) return; cerr << "PDMTYPE " << pdmtype << " expected, but found " << type << endl; } void fitshandle::read_column_raw_void (int colnum, void *data, PDT type, int64 num, int64 offset) const { switch (type) { case PLANCK_INT8: case PLANCK_UINT8: case PLANCK_INT16: case PLANCK_INT32: case PLANCK_INT64: case PLANCK_FLOAT32: case PLANCK_FLOAT64: case PLANCK_BOOL: read_col (colnum, data, num, type, offset); break; case PLANCK_STRING: { string *data2 = static_cast (data); planck_assert(table_hdu(colnum),"incorrect FITS table access"); planck_assert (num<=(nrows_-offset), "read_column(): array too large"); arr2b tdata(safe_cast(num), safe_cast(columns_[colnum-1].repcount()+1)); int dispwidth; fits_get_col_display_width(FPTR, colnum, &dispwidth, &status); planck_assert(dispwidth<=columns_[colnum-1].repcount(),"column too wide"); fits_read_col (FPTR, TSTRING, colnum, offset+1, 1, num, 0, tdata.p0(), 0, &status); check_errors(); for (long m=0;m (data); planck_assert(table_hdu(colnum),"incorrect FITS table access"); tsize stringlen = safe_cast(columns_[colnum-1].repcount()+1); arr2b tdata(safe_cast(num), stringlen); for (long m=0;m(data), &status); check_errors(); } void fitshandle::write_subimage_void (const void *data, PDT type, tsize sz, int64 offset) { planck_assert(image_hdu(),"not connected to an image"); fits_write_img (FPTR, type2ftc(type), 1+offset, sz, const_cast(data), &status); check_errors(); } template void fitshandle::read_image (arr2 &data) const { planck_assert(image_hdu(),"not connected to an image"); planck_assert (axes_.size()==2, "wrong number of dimensions"); data.alloc(safe_cast(axes_[0]), safe_cast(axes_[1])); fits_read_img (FPTR, fitsType(), 1, axes_[0]*axes_[1], 0, &data[0][0], 0, &status); check_errors(); } template void fitshandle::read_image (arr2 &data) const; template void fitshandle::read_image (arr2 &data) const; template void fitshandle::read_image (arr3 &data) const { planck_assert(image_hdu(),"not connected to an image"); planck_assert (axes_.size()==3, "wrong number of dimensions"); data.alloc(safe_cast(axes_[0]), safe_cast(axes_[1]), safe_cast(axes_[2])); fits_read_img (FPTR, fitsType(), 1, axes_[0]*axes_[1]*axes_[2], 0, &data(0,0,0), 0, &status); check_errors(); } template void fitshandle::read_image (arr3 &data) const; template void fitshandle::read_image (arr3 &data) const; template void fitshandle::read_subimage (arr2 &data, int xl, int yl) const { planck_assert(image_hdu(),"not connected to an image"); planck_assert (axes_.size()==2, "wrong number of dimensions"); for (tsize m=0; m(), (xl+m)*axes_[1]+yl+1, data.size2(), 0, &data[m][0], 0, &status); check_errors(); } template void fitshandle::read_subimage (arr2 &data, int xl, int yl) const; template void fitshandle::read_subimage (arr2 &data, int xl, int yl) const; void fitshandle::read_subimage_void (void *data, PDT type, tsize ndata, int64 offset) const { planck_assert(image_hdu(),"not connected to an image"); fits_read_img (FPTR, type2ftc(type), 1+offset, ndata, 0, data, 0, &status); check_errors(); } namespace { class cfitsio_checker { public: cfitsio_checker() { float fitsversion; planck_assert(fits_get_version(&fitsversion), "error calling fits_get_version()"); int v_header = nearest(1000.*CFITSIO_VERSION), v_library = nearest(1000.*fitsversion); if (v_header!=v_library) cerr << endl << "WARNING: version mismatch between CFITSIO header (v" << dataToString(v_header*0.001) << ") and linked library (v" << dataToString(v_library*0.001) << ")." << endl << endl; } }; cfitsio_checker Cfitsio_Checker; } // unnamed namespace healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/announce.cc0000650000175000017530000000631612255154051026765 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * This file contains the implementation of various convenience functions * used by the Planck LevelS package. * * Copyright (C) 2002-2011 Max-Planck-Society * Authors: Martin Reinecke, Reinhard Hell */ // if we are using g++, check for version 4.0 or higher #ifdef __GNUC__ #if (__GNUC__<4) #error your C++ compiler is too old. g++ version 4.0 or higher is required. #endif #endif #include #include "announce.h" #include "openmp_support.h" using namespace std; namespace { void openmp_status() { #ifndef _OPENMP cout << "OpenMP: not supported by this binary" << endl; #else int threads = openmp_max_threads(); if (threads>1) cout << "OpenMP active: max. " << threads << " threads." << endl; else cout << "OpenMP active, but running with 1 thread only." << endl; #endif } void vec_status() { cout << "Vector math: "; #if(defined(__AVX__)) cout << "AVX" << endl; #elif(defined(__SSE2__)) cout << "SSE2" << endl; #elif(defined(__SSE__)) cout << "SSE" << endl; #else cout << "not supported by this binary" << endl; #endif } } //unnamed namespace void announce (const string &name) { #ifndef VERSION #define VERSION "?.?" #endif string version = "v" VERSION; string name2 = name+" "+version; cout << endl << "+-"; for (tsize m=0; m=2, string("Usage:\n ")+name+" \nor:\n " +name+" par1=val1 par2=val2 ...", verbose); } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/string_utils.h0000650000175000017530000000777012255154051027554 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file string_utils.h * Various functions for manipulating strings. * * Copyright (C) 2002-2012 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_STRING_UTILS_H #define PLANCK_STRING_UTILS_H #include #include #include "datatypes.h" /*! \defgroup stringutilsgroup String handling helper functions */ /*! \{ */ /*! Returns the string \a orig without leading and trailing whitespace. */ std::string trim (const std::string &orig); /*! Returns a string containing the text representation of \a x. Care is taken that no information is lost in the conversion. */ template std::string dataToString(const T &x); template<> std::string dataToString (const bool &x); template<> std::string dataToString (const std::string &x); template<> std::string dataToString (const float &x); template<> std::string dataToString (const double &x); template<> std::string dataToString (const long double &x); /*! Returns a string containing the text representation of \a x, padded with leading zeroes to \a width characters. */ std::string intToString(int64 x, tsize width); /*! Reads a value of a given datatype from a string */ template void stringToData (const std::string &x, T &value); template<> void stringToData (const std::string &x, std::string &value); template<> void stringToData (const std::string &x, bool &value); /*! Reads a value of a given datatype from a string */ template inline T stringToData (const std::string &x) { T result; stringToData(x,result); return result; } /*! Parses the file \a filename and returns the key/value pairs in \a dict. */ void parse_file (const std::string &filename, std::map &dict); void parse_cmdline_classic (int argc, const char **argv, const std::vector &leading_args, std::map &dict); void parse_cmdline_classic (int argc, const char **argv, std::map &dict); void parse_cmdline_equalsign (int argc, const char **argv, const std::vector &leading_args, std::map &dict); void parse_cmdline_equalsign (int argc, const char **argv, std::map &dict); /*! Case-insensitive string comparison Returns \a true, if \a a and \a b differ only in capitalisation, else \a false. */ bool equal_nocase (const std::string &a, const std::string &b); /*! Returns lowercase version of \a input. */ std::string tolower(const std::string &input); /*! Tries to split \a inp into a white-space separated list of values of type \a T, and appends them to \a list. */ template void split (const std::string &inp, std::vector &list); /*! Breaks the string \a inp into tokens separated by \a delim, and returns them in \a list. */ void tokenize (const std::string &inp, char delim, std::vector &list); /*! Reads all white-space separated strings from \a filename, and returns them in \a words. */ void parse_words_from_file (const std::string &filename, std::vector &words); /*! \} */ #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/cxxsupport/error_handling.h0000650000175000017530000000605712255154051030020 0ustar zoncaplanck00000000000000/* * This file is part of libcxxsupport. * * libcxxsupport is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libcxxsupport is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libcxxsupport; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libcxxsupport is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file error_handling.h * Utilities for error reporting * * Copyright (C) 2003-2011 Max-Planck-Society * Authors: Reinhard Hell, Martin Reinecke */ #ifndef PLANCK_ERROR_HANDLING_H #define PLANCK_ERROR_HANDLING_H #include #include #if defined (__GNUC__) #define PLANCK_FUNC_NAME__ __PRETTY_FUNCTION__ #else #define PLANCK_FUNC_NAME__ 0 #endif void planck_failure__(const char *file, int line, const char *func, const std::string &msg); void planck_failure__(const char *file, int line, const char *func, const char *msg); void killjob__(); class PlanckError { private: std::string msg; public: explicit PlanckError(const std::string &message); explicit PlanckError(const char *message); virtual const char* what() const { return msg.c_str(); } virtual ~PlanckError(); }; /*! \defgroup errorgroup Error handling */ /*! \{ */ /*! Writes diagnostic output and exits with an error status. */ #define planck_fail(msg) \ do { planck_failure__(__FILE__,__LINE__,PLANCK_FUNC_NAME__,msg); \ throw PlanckError(msg); } while(0) /*! Throws a PlanckError without diagnostic message. */ #define planck_fail_quietly(msg) \ do { throw PlanckError(msg); } while(0) /*! Writes diagnostic output and exits with an error status if \a testval is \a false. */ #define planck_assert(testval,msg) \ do { if (testval); else planck_fail(msg); } while(0) /*! Macro for improving error diagnostics. Should be placed immediately after the opening brace of \c main(). Must be used in conjunction with \c PLANCK_DIAGNOSIS_END. */ #define PLANCK_DIAGNOSIS_BEGIN try { /*! Macro for improving error diagnostics. Should be placed immediately before the closing brace of \c main(). Must be used in conjunction with \c PLANCK_DIAGNOSIS_BEGIN. */ #define PLANCK_DIAGNOSIS_END \ } \ catch (PlanckError &) \ { killjob__(); /* no need for further diagnostics; they were shown already */ } \ catch (std::exception &e) \ { std::cerr << "std::exception: " << e.what() << std::endl; killjob__(); } \ catch (...) \ { std::cerr << "Unknown exception" << std::endl; killjob__(); } /*! \} */ #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/install-sh0000755000175000017500000003325512346122572024265 0ustar zoncazonca00000000000000#!/bin/sh # install - install a program, script, or datafile scriptversion=2011-11-20.07; # UTC # This originates from X11R5 (mit/util/scripts/install.sh), which was # later released in X11R6 (xc/config/util/install.sh) with the # following copyright and license. # # Copyright (C) 1994 X Consortium # # Permission is hereby granted, free of charge, to any person obtaining a copy # of this software and associated documentation files (the "Software"), to # deal in the Software without restriction, including without limitation the # rights to use, copy, modify, merge, publish, distribute, sublicense, and/or # sell copies of the Software, and to permit persons to whom the Software is # furnished to do so, subject to the following conditions: # # The above copyright notice and this permission notice shall be included in # all copies or substantial portions of the Software. # # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. 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(umask $mkdir_umask && eval "\$doit_exec \$mkdirprog $prefixes") || test -d "$dstdir" || exit 1 obsolete_mkdir_used=true fi fi fi if test -n "$dir_arg"; then { test -z "$chowncmd" || $doit $chowncmd "$dst"; } && { test -z "$chgrpcmd" || $doit $chgrpcmd "$dst"; } && { test "$obsolete_mkdir_used$chowncmd$chgrpcmd" = false || test -z "$chmodcmd" || $doit $chmodcmd $mode "$dst"; } || exit 1 else # Make a couple of temp file names in the proper directory. dsttmp=$dstdir/_inst.$$_ rmtmp=$dstdir/_rm.$$_ # Trap to clean up those temp files at exit. trap 'ret=$?; rm -f "$dsttmp" "$rmtmp" && exit $ret' 0 # Copy the file name to the temp name. (umask $cp_umask && $doit_exec $cpprog "$src" "$dsttmp") && # and set any options; do chmod last to preserve setuid bits. # # If any of these fail, we abort the whole thing. If we want to # ignore errors from any of these, just make sure not to ignore # errors from the above "$doit $cpprog $src $dsttmp" command. # { test -z "$chowncmd" || $doit $chowncmd "$dsttmp"; } && { test -z "$chgrpcmd" || $doit $chgrpcmd "$dsttmp"; } && { test -z "$stripcmd" || $doit $stripcmd "$dsttmp"; } && { test -z "$chmodcmd" || $doit $chmodcmd $mode "$dsttmp"; } && # If -C, don't bother to copy if it wouldn't change the file. if $copy_on_change && old=`LC_ALL=C ls -dlL "$dst" 2>/dev/null` && new=`LC_ALL=C ls -dlL "$dsttmp" 2>/dev/null` && eval "$initialize_posix_glob" && $posix_glob set -f && set X $old && old=:$2:$4:$5:$6 && set X $new && new=:$2:$4:$5:$6 && $posix_glob set +f && test "$old" = "$new" && $cmpprog "$dst" "$dsttmp" >/dev/null 2>&1 then rm -f "$dsttmp" else # Rename the file to the real destination. $doit $mvcmd -f "$dsttmp" "$dst" 2>/dev/null || # The rename failed, perhaps because mv can't rename something else # to itself, or perhaps because mv is so ancient that it does not # support -f. { # Now remove or move aside any old file at destination location. # We try this two ways since rm can't unlink itself on some # systems and the destination file might be busy for other # reasons. In this case, the final cleanup might fail but the new # file should still install successfully. { test ! -f "$dst" || $doit $rmcmd -f "$dst" 2>/dev/null || { $doit $mvcmd -f "$dst" "$rmtmp" 2>/dev/null && { $doit $rmcmd -f "$rmtmp" 2>/dev/null; :; } } || { echo "$0: cannot unlink or rename $dst" >&2 (exit 1); exit 1 } } && # Now rename the file to the real destination. $doit $mvcmd "$dsttmp" "$dst" } fi || exit 1 trap '' 0 fi done # Local variables: # eval: (add-hook 'write-file-hooks 'time-stamp) # time-stamp-start: "scriptversion=" # time-stamp-format: "%:y-%02m-%02d.%02H" # time-stamp-time-zone: "UTC" # time-stamp-end: "; # UTC" # End: healpy-1.8.1/healpixsubmodule/src/cxx/autotools/Makefile.am0000650000175000017530000001472612255154051024451 0ustar zoncaplanck00000000000000ACLOCAL_AMFLAGS = -I m4 lib_LTLIBRARIES = libhealpix_cxx.la src_c_utils = \ c_utils/c_utils.c \ c_utils/c_utils.h \ c_utils/walltime_c.c \ c_utils/walltime_c.h src_libfftpack = \ libfftpack/bluestein.h \ libfftpack/bluestein.c \ libfftpack/fftpack.h \ libfftpack/fftpack.c \ libfftpack/ls_fft.h \ libfftpack/ls_fft.c src_libsharp = \ libsharp/sharp.c \ libsharp/sharp.h \ libsharp/sharp_cxx.h \ libsharp/sharp_almhelpers.c \ libsharp/sharp_almhelpers.h \ libsharp/sharp_complex_hacks.h \ libsharp/sharp_core.c \ libsharp/sharp_core.h \ libsharp/sharp_geomhelpers.c \ libsharp/sharp_geomhelpers.h \ libsharp/sharp_internal.h \ libsharp/sharp_lowlevel.h \ libsharp/sharp_vecsupport.h \ libsharp/sharp_vecutil.h \ libsharp/sharp_ylmgen_c.c \ libsharp/sharp_ylmgen_c.h src_cxxsupport = \ cxxsupport/announce.cc \ cxxsupport/fitshandle.cc \ cxxsupport/geom_utils.cc \ cxxsupport/string_utils.cc \ cxxsupport/ls_image.cc \ cxxsupport/paramfile.cc \ cxxsupport/pointing.cc \ cxxsupport/rotmatrix.cc \ cxxsupport/trafos.cc \ cxxsupport/walltimer.cc \ cxxsupport/wigner.cc \ cxxsupport/error_handling.cc \ cxxsupport/alloc_utils.h \ cxxsupport/announce.h \ cxxsupport/arr.h \ cxxsupport/bstream.h \ cxxsupport/datatypes.h \ cxxsupport/error_handling.h \ cxxsupport/fftpack_support.h \ cxxsupport/fitshandle.h \ cxxsupport/geom_utils.h \ cxxsupport/levels_facilities.h \ cxxsupport/ls_image.h \ cxxsupport/lsconstants.h \ cxxsupport/math_utils.h \ cxxsupport/openmp_support.h \ cxxsupport/paramfile.h \ cxxsupport/planck_rng.h \ cxxsupport/pointing.h \ cxxsupport/rangeset.h \ cxxsupport/rotmatrix.h \ cxxsupport/safe_cast.h \ cxxsupport/safe_ptr.h \ cxxsupport/share_utils.h \ cxxsupport/sse_utils_cxx.h \ cxxsupport/string_utils.h \ cxxsupport/trafos.h \ cxxsupport/vec3.h \ cxxsupport/walltimer.h \ cxxsupport/wigner.h \ cxxsupport/xcomplex.h src_healpix_cxx= \ Healpix_cxx/alm.cc \ Healpix_cxx/alm.h \ Healpix_cxx/alm2map_cxx_module.cc \ Healpix_cxx/alm_fitsio.cc \ Healpix_cxx/alm_fitsio.h \ Healpix_cxx/alm_healpix_tools.cc \ Healpix_cxx/alm_healpix_tools.h \ Healpix_cxx/alm_powspec_tools.cc \ Healpix_cxx/alm_powspec_tools.h \ Healpix_cxx/anafast_cxx_module.cc \ Healpix_cxx/calc_powspec_module.cc \ Healpix_cxx/healpix_base.cc \ Healpix_cxx/healpix_base.h \ Healpix_cxx/healpix_data_io.cc \ Healpix_cxx/healpix_data_io.h \ Healpix_cxx/healpix_map.cc \ Healpix_cxx/healpix_map.h \ Healpix_cxx/healpix_map_fitsio.cc \ Healpix_cxx/healpix_map_fitsio.h \ Healpix_cxx/healpix_tables.cc \ Healpix_cxx/healpix_tables.h \ Healpix_cxx/hotspots_cxx_module.cc \ Healpix_cxx/map2tga_module.cc \ Healpix_cxx/median_filter_cxx_module.cc \ Healpix_cxx/mult_alm_module.cc \ Healpix_cxx/powspec.cc \ Healpix_cxx/powspec.h \ Healpix_cxx/powspec_fitsio.cc \ Healpix_cxx/powspec_fitsio.h \ Healpix_cxx/smoothing_cxx_module.cc \ Healpix_cxx/syn_alm_cxx_module.cc \ Healpix_cxx/udgrade_cxx_module.cc \ Healpix_cxx/udgrade_harmonic_cxx_module.cc EXTRA_DIST = \ libfftpack/fftpack_inc.c \ libsharp/sharp_core_inc.c \ libsharp/sharp_core_inc2.c \ libsharp/sharp_core_inchelper.c \ cxxsupport/font_data.inc include_HEADERS = \ libsharp/sharp.h \ libsharp/sharp_lowlevel.h \ libsharp/sharp_geomhelpers.c \ libsharp/sharp_geomhelpers.h \ cxxsupport/arr.h \ cxxsupport/xcomplex.h \ cxxsupport/datatypes.h \ cxxsupport/pointing.h \ cxxsupport/rangeset.h \ cxxsupport/fitshandle.h \ cxxsupport/alloc_utils.h \ cxxsupport/math_utils.h \ cxxsupport/error_handling.h \ cxxsupport/lsconstants.h \ cxxsupport/safe_cast.h \ cxxsupport/vec3.h \ cxxsupport/wigner.h \ cxxsupport/rotmatrix.h \ cxxsupport/sse_utils_cxx.h \ cxxsupport/string_utils.h \ Healpix_cxx/alm.h \ Healpix_cxx/alm_fitsio.h \ Healpix_cxx/alm_healpix_tools.h \ Healpix_cxx/alm_powspec_tools.h \ Healpix_cxx/healpix_base.h \ Healpix_cxx/healpix_data_io.h \ Healpix_cxx/healpix_map.h \ Healpix_cxx/healpix_map_fitsio.h \ Healpix_cxx/healpix_tables.h \ Healpix_cxx/powspec.h \ Healpix_cxx/powspec_fitsio.h libhealpix_cxx_la_SOURCES = $(src_c_utils) $(src_libfftpack) $(src_libsharp) $(src_cxxsupport) $(src_healpix_cxx) libhealpix_cxx_la_LIBADD = $(CFITSIO_LIBS) bin_PROGRAMS = alm2map_cxx anafast_cxx calc_powspec hotspots_cxx map2tga \ median_filter_cxx mult_alm rotalm_cxx smoothing_cxx syn_alm_cxx udgrade_cxx \ udgrade_harmonic_cxx hpxtest alm2map_cxx_SOURCES = Healpix_cxx/alm2map_cxx.cc alm2map_cxx_LDADD = libhealpix_cxx.la alm2map_cxx_LDFLAGS = -static-libtool-libs anafast_cxx_SOURCES = Healpix_cxx/anafast_cxx.cc anafast_cxx_LDADD = libhealpix_cxx.la anafast_cxx_LDFLAGS = -static-libtool-libs calc_powspec_SOURCES = Healpix_cxx/calc_powspec.cc calc_powspec_LDADD = libhealpix_cxx.la calc_powspec_LDFLAGS = -static-libtool-libs hotspots_cxx_SOURCES = Healpix_cxx/hotspots_cxx.cc hotspots_cxx_LDADD = libhealpix_cxx.la hotspots_cxx_LDFLAGS = -static-libtool-libs map2tga_SOURCES = Healpix_cxx/map2tga.cc map2tga_LDADD = libhealpix_cxx.la map2tga_LDFLAGS = -static-libtool-libs median_filter_cxx_SOURCES = Healpix_cxx/median_filter_cxx.cc median_filter_cxx_LDADD = libhealpix_cxx.la median_filter_cxx_LDFLAGS = -static-libtool-libs mult_alm_SOURCES = Healpix_cxx/mult_alm.cc mult_alm_LDADD = libhealpix_cxx.la mult_alm_LDFLAGS = -static-libtool-libs rotalm_cxx_SOURCES = Healpix_cxx/rotalm_cxx.cc rotalm_cxx_LDADD = libhealpix_cxx.la rotalm_cxx_LDFLAGS = -static-libtool-libs smoothing_cxx_SOURCES = Healpix_cxx/smoothing_cxx.cc smoothing_cxx_LDADD = libhealpix_cxx.la smoothing_cxx_LDFLAGS = -static-libtool-libs syn_alm_cxx_SOURCES = Healpix_cxx/syn_alm_cxx.cc syn_alm_cxx_LDADD = libhealpix_cxx.la syn_alm_cxx_LDFLAGS = -static-libtool-libs udgrade_cxx_SOURCES = Healpix_cxx/udgrade_cxx.cc udgrade_cxx_LDADD = libhealpix_cxx.la udgrade_cxx_LDFLAGS = -static-libtool-libs udgrade_harmonic_cxx_SOURCES = Healpix_cxx/udgrade_harmonic_cxx.cc udgrade_harmonic_cxx_LDADD = libhealpix_cxx.la udgrade_harmonic_cxx_LDFLAGS = -static-libtool-libs hpxtest_SOURCES=Healpix_cxx/hpxtest.cc hpxtest_LDADD = libhealpix_cxx.la hpxtest_LDFLAGS = -static-libtool-libs TESTS=hpxtest AM_CPPFLAGS = $(CFITSIO_CFLAGS) -I$(top_srcdir)/c_utils -I$(top_srcdir)/libfftpack -I$(top_srcdir)/libsharp -I$(top_srcdir)/cxxsupport pkgconfigdir = $(libdir)/pkgconfig nodist_pkgconfig_DATA = @PACKAGE_NAME@.pc DISTCLEANFILES=@PACKAGE_NAME@.pc @PACKAGE_NAME@.pc.in @PACKAGE_NAME@-uninstalled.pc @PACKAGE_NAME@-uninstalled.sh healpy-1.8.1/healpixsubmodule/src/cxx/autotools/config.sub0000755000175000017500000010563412346122572024245 0ustar zoncazonca00000000000000#! /bin/sh # Configuration validation subroutine script. # Copyright 1992-2014 Free Software Foundation, Inc. timestamp='2014-05-01' # This file is free software; you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU # General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; if not, see . # # As a special exception to the GNU General Public License, if you # distribute this file as part of a program that contains a # configuration script generated by Autoconf, you may include it under # the same distribution terms that you use for the rest of that # program. This Exception is an additional permission under section 7 # of the GNU General Public License, version 3 ("GPLv3"). # Please send patches with a ChangeLog entry to config-patches@gnu.org. # # Configuration subroutine to validate and canonicalize a configuration type. # Supply the specified configuration type as an argument. # If it is invalid, we print an error message on stderr and exit with code 1. # Otherwise, we print the canonical config type on stdout and succeed. # You can get the latest version of this script from: # http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.sub;hb=HEAD # This file is supposed to be the same for all GNU packages # and recognize all the CPU types, system types and aliases # that are meaningful with *any* GNU software. # Each package is responsible for reporting which valid configurations # it does not support. The user should be able to distinguish # a failure to support a valid configuration from a meaningless # configuration. # The goal of this file is to map all the various variations of a given # machine specification into a single specification in the form: # CPU_TYPE-MANUFACTURER-OPERATING_SYSTEM # or in some cases, the newer four-part form: # CPU_TYPE-MANUFACTURER-KERNEL-OPERATING_SYSTEM # It is wrong to echo any other type of specification. me=`echo "$0" | sed -e 's,.*/,,'` usage="\ Usage: $0 [OPTION] CPU-MFR-OPSYS $0 [OPTION] ALIAS Canonicalize a configuration name. Operation modes: -h, --help print this help, then exit -t, --time-stamp print date of last modification, then exit -v, --version print version number, then exit Report bugs and patches to ." version="\ GNU config.sub ($timestamp) Copyright 1992-2014 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE." help=" Try \`$me --help' for more information." # Parse command line while test $# -gt 0 ; do case $1 in --time-stamp | --time* | -t ) echo "$timestamp" ; exit ;; --version | -v ) echo "$version" ; exit ;; --help | --h* | -h ) echo "$usage"; exit ;; -- ) # Stop option processing shift; break ;; - ) # Use stdin as input. break ;; -* ) echo "$me: invalid option $1$help" exit 1 ;; *local*) # First pass through any local machine types. echo $1 exit ;; * ) break ;; esac done case $# in 0) echo "$me: missing argument$help" >&2 exit 1;; 1) ;; *) echo "$me: too many arguments$help" >&2 exit 1;; esac # Separate what the user gave into CPU-COMPANY and OS or KERNEL-OS (if any). # Here we must recognize all the valid KERNEL-OS combinations. maybe_os=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\2/'` case $maybe_os in nto-qnx* | linux-gnu* | linux-android* | linux-dietlibc | linux-newlib* | \ linux-musl* | linux-uclibc* | uclinux-uclibc* | uclinux-gnu* | kfreebsd*-gnu* | \ knetbsd*-gnu* | netbsd*-gnu* | \ kopensolaris*-gnu* | \ storm-chaos* | os2-emx* | rtmk-nova*) os=-$maybe_os basic_machine=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\1/'` ;; android-linux) os=-linux-android basic_machine=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\1/'`-unknown ;; *) basic_machine=`echo $1 | sed 's/-[^-]*$//'` if [ $basic_machine != $1 ] then os=`echo $1 | sed 's/.*-/-/'` else os=; fi ;; esac ### Let's recognize common machines as not being operating systems so ### that things like config.sub decstation-3100 work. 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-mint | -mint[0-9]*) basic_machine=m68k-atari os=-mint ;; esac # Decode aliases for certain CPU-COMPANY combinations. case $basic_machine in # Recognize the basic CPU types without company name. # Some are omitted here because they have special meanings below. 1750a | 580 \ | a29k \ | aarch64 | aarch64_be \ | alpha | alphaev[4-8] | alphaev56 | alphaev6[78] | alphapca5[67] \ | alpha64 | alpha64ev[4-8] | alpha64ev56 | alpha64ev6[78] | alpha64pca5[67] \ | am33_2.0 \ | arc | arceb \ | arm | arm[bl]e | arme[lb] | armv[2-8] | armv[3-8][lb] | armv7[arm] \ | avr | avr32 \ | be32 | be64 \ | bfin \ | c4x | c8051 | clipper \ | d10v | d30v | dlx | dsp16xx \ | epiphany \ | fido | fr30 | frv \ | h8300 | h8500 | hppa | hppa1.[01] | hppa2.0 | hppa2.0[nw] | hppa64 \ | hexagon \ | i370 | i860 | i960 | ia64 \ | ip2k | iq2000 \ | k1om \ | le32 | le64 \ | lm32 \ | m32c | m32r | m32rle | m68000 | m68k | m88k \ | maxq | mb | microblaze | microblazeel | mcore | mep | metag \ | mips | mipsbe | mipseb | mipsel | mipsle \ | mips16 \ | mips64 | mips64el \ | mips64octeon | mips64octeonel \ | mips64orion | mips64orionel \ | mips64r5900 | mips64r5900el \ | mips64vr | mips64vrel \ | mips64vr4100 | mips64vr4100el \ | mips64vr4300 | mips64vr4300el \ | mips64vr5000 | mips64vr5000el \ | mips64vr5900 | mips64vr5900el \ | mipsisa32 | mipsisa32el \ | mipsisa32r2 | mipsisa32r2el \ | mipsisa32r6 | mipsisa32r6el \ | mipsisa64 | mipsisa64el \ | mipsisa64r2 | mipsisa64r2el \ | mipsisa64r6 | mipsisa64r6el \ | mipsisa64sb1 | mipsisa64sb1el \ | mipsisa64sr71k | mipsisa64sr71kel \ | mipsr5900 | mipsr5900el \ | mipstx39 | mipstx39el \ | mn10200 | mn10300 \ | moxie \ | mt \ | msp430 \ | nds32 | nds32le | nds32be \ | nios | nios2 | nios2eb | nios2el \ | ns16k | ns32k \ | open8 | or1k | or1knd | or32 \ | pdp10 | pdp11 | pj | pjl \ | powerpc | powerpc64 | powerpc64le | powerpcle \ | pyramid \ | rl78 | rx \ | score \ | sh | sh[1234] | sh[24]a | sh[24]aeb | sh[23]e | sh[34]eb | sheb | shbe | shle | sh[1234]le | sh3ele \ | sh64 | sh64le \ | sparc | sparc64 | sparc64b | sparc64v | sparc86x | sparclet | sparclite \ | sparcv8 | sparcv9 | sparcv9b | sparcv9v \ | spu \ | tahoe | tic4x | tic54x | tic55x | tic6x | tic80 | tron \ | ubicom32 \ | v850 | v850e | v850e1 | v850e2 | v850es | v850e2v3 \ | we32k \ | x86 | xc16x | xstormy16 | xtensa \ | z8k | z80) basic_machine=$basic_machine-unknown ;; c54x) basic_machine=tic54x-unknown ;; c55x) basic_machine=tic55x-unknown ;; c6x) basic_machine=tic6x-unknown ;; m6811 | m68hc11 | m6812 | m68hc12 | m68hcs12x | nvptx | picochip) basic_machine=$basic_machine-unknown os=-none ;; m88110 | m680[12346]0 | m683?2 | m68360 | m5200 | v70 | w65 | z8k) ;; ms1) basic_machine=mt-unknown ;; strongarm | thumb | xscale) basic_machine=arm-unknown ;; xgate) basic_machine=$basic_machine-unknown os=-none ;; xscaleeb) basic_machine=armeb-unknown ;; xscaleel) basic_machine=armel-unknown ;; # We use `pc' rather than `unknown' # because (1) that's what they normally are, and # (2) the word "unknown" tends to confuse beginning users. i*86 | x86_64) basic_machine=$basic_machine-pc ;; # Object if more than one company name word. *-*-*) echo Invalid configuration \`$1\': machine \`$basic_machine\' not recognized 1>&2 exit 1 ;; # Recognize the basic CPU types with company name. 580-* \ | a29k-* \ | aarch64-* | aarch64_be-* \ | alpha-* | alphaev[4-8]-* | alphaev56-* | alphaev6[78]-* \ | alpha64-* | alpha64ev[4-8]-* | alpha64ev56-* | alpha64ev6[78]-* \ | alphapca5[67]-* | alpha64pca5[67]-* | arc-* | arceb-* \ | arm-* | armbe-* | armle-* | armeb-* | armv*-* \ | avr-* | avr32-* \ | be32-* | be64-* \ | bfin-* | bs2000-* \ | c[123]* | c30-* | [cjt]90-* | c4x-* \ | c8051-* | clipper-* | craynv-* | cydra-* \ | d10v-* | d30v-* | dlx-* \ | elxsi-* \ | f30[01]-* | f700-* | fido-* | fr30-* | frv-* | fx80-* \ | h8300-* | h8500-* \ | hppa-* | hppa1.[01]-* | hppa2.0-* | hppa2.0[nw]-* | hppa64-* \ | hexagon-* \ | i*86-* | i860-* | i960-* | ia64-* \ | ip2k-* | iq2000-* \ | k1om-* \ | le32-* | le64-* \ | lm32-* \ | m32c-* | m32r-* | m32rle-* \ | m68000-* | m680[012346]0-* | m68360-* | m683?2-* | m68k-* \ | m88110-* | m88k-* | maxq-* | mcore-* | metag-* \ | microblaze-* | microblazeel-* \ | mips-* | mipsbe-* | mipseb-* | mipsel-* | mipsle-* \ | mips16-* \ | mips64-* | mips64el-* \ | mips64octeon-* | mips64octeonel-* \ | mips64orion-* | mips64orionel-* \ | mips64r5900-* | mips64r5900el-* \ | mips64vr-* | mips64vrel-* \ | mips64vr4100-* | mips64vr4100el-* \ | mips64vr4300-* | mips64vr4300el-* \ | mips64vr5000-* | mips64vr5000el-* \ | mips64vr5900-* | mips64vr5900el-* \ | mipsisa32-* | mipsisa32el-* \ | mipsisa32r2-* | mipsisa32r2el-* \ | mipsisa32r6-* | mipsisa32r6el-* \ | mipsisa64-* | mipsisa64el-* \ | mipsisa64r2-* | mipsisa64r2el-* \ | mipsisa64r6-* | mipsisa64r6el-* \ | mipsisa64sb1-* | mipsisa64sb1el-* \ | mipsisa64sr71k-* | mipsisa64sr71kel-* \ | mipsr5900-* | mipsr5900el-* \ | mipstx39-* | mipstx39el-* \ | mmix-* \ | mt-* \ | msp430-* \ | nds32-* | nds32le-* | nds32be-* \ | nios-* | nios2-* | nios2eb-* | nios2el-* \ | none-* | np1-* | ns16k-* | ns32k-* \ | open8-* \ | or1k*-* \ | orion-* \ | pdp10-* | pdp11-* | pj-* | pjl-* | pn-* | power-* \ | powerpc-* | powerpc64-* | powerpc64le-* | powerpcle-* \ | pyramid-* \ | rl78-* | romp-* | rs6000-* | rx-* \ | sh-* | sh[1234]-* | sh[24]a-* | sh[24]aeb-* | sh[23]e-* | sh[34]eb-* | sheb-* | shbe-* \ | shle-* | sh[1234]le-* | sh3ele-* | sh64-* | sh64le-* \ | sparc-* | sparc64-* | sparc64b-* | sparc64v-* | sparc86x-* | sparclet-* \ | sparclite-* \ | sparcv8-* | sparcv9-* | sparcv9b-* | sparcv9v-* | sv1-* | sx?-* \ | tahoe-* \ | tic30-* | tic4x-* | tic54x-* | tic55x-* | tic6x-* | tic80-* \ | tile*-* \ | tron-* \ | ubicom32-* \ | v850-* | v850e-* | v850e1-* | v850es-* | v850e2-* | v850e2v3-* \ | vax-* \ | we32k-* \ | x86-* | x86_64-* | xc16x-* | xps100-* \ | xstormy16-* | xtensa*-* \ | ymp-* \ | z8k-* | z80-*) ;; # Recognize the basic CPU types without company name, with glob match. xtensa*) basic_machine=$basic_machine-unknown ;; # Recognize the various machine names and aliases which stand # for a CPU type and a company and sometimes even an OS. 386bsd) basic_machine=i386-unknown os=-bsd ;; 3b1 | 7300 | 7300-att | att-7300 | pc7300 | safari | unixpc) basic_machine=m68000-att ;; 3b*) basic_machine=we32k-att ;; a29khif) basic_machine=a29k-amd os=-udi ;; abacus) basic_machine=abacus-unknown ;; adobe68k) basic_machine=m68010-adobe os=-scout ;; alliant | fx80) basic_machine=fx80-alliant ;; altos | altos3068) basic_machine=m68k-altos ;; am29k) basic_machine=a29k-none os=-bsd ;; amd64) basic_machine=x86_64-pc ;; amd64-*) basic_machine=x86_64-`echo $basic_machine | sed 's/^[^-]*-//'` ;; amdahl) basic_machine=580-amdahl os=-sysv ;; amiga | amiga-*) basic_machine=m68k-unknown ;; amigaos | amigados) basic_machine=m68k-unknown os=-amigaos ;; amigaunix | amix) basic_machine=m68k-unknown os=-sysv4 ;; apollo68) basic_machine=m68k-apollo os=-sysv ;; apollo68bsd) basic_machine=m68k-apollo os=-bsd ;; aros) basic_machine=i386-pc os=-aros ;; aux) basic_machine=m68k-apple os=-aux ;; balance) basic_machine=ns32k-sequent os=-dynix ;; blackfin) basic_machine=bfin-unknown os=-linux ;; blackfin-*) basic_machine=bfin-`echo $basic_machine | sed 's/^[^-]*-//'` os=-linux ;; bluegene*) basic_machine=powerpc-ibm os=-cnk ;; c54x-*) basic_machine=tic54x-`echo $basic_machine | sed 's/^[^-]*-//'` ;; c55x-*) basic_machine=tic55x-`echo $basic_machine | sed 's/^[^-]*-//'` ;; c6x-*) basic_machine=tic6x-`echo $basic_machine | sed 's/^[^-]*-//'` ;; c90) basic_machine=c90-cray os=-unicos ;; cegcc) basic_machine=arm-unknown os=-cegcc ;; convex-c1) basic_machine=c1-convex os=-bsd ;; convex-c2) basic_machine=c2-convex os=-bsd ;; convex-c32) basic_machine=c32-convex os=-bsd ;; convex-c34) basic_machine=c34-convex os=-bsd ;; convex-c38) basic_machine=c38-convex os=-bsd ;; cray | j90) basic_machine=j90-cray os=-unicos ;; craynv) basic_machine=craynv-cray os=-unicosmp ;; cr16 | cr16-*) basic_machine=cr16-unknown os=-elf ;; crds | unos) basic_machine=m68k-crds ;; crisv32 | crisv32-* | etraxfs*) basic_machine=crisv32-axis ;; cris | cris-* | etrax*) basic_machine=cris-axis ;; crx) basic_machine=crx-unknown os=-elf ;; da30 | da30-*) basic_machine=m68k-da30 ;; decstation | decstation-3100 | pmax | pmax-* | pmin | dec3100 | decstatn) basic_machine=mips-dec ;; decsystem10* | dec10*) basic_machine=pdp10-dec os=-tops10 ;; decsystem20* | dec20*) basic_machine=pdp10-dec os=-tops20 ;; delta | 3300 | motorola-3300 | motorola-delta \ | 3300-motorola | delta-motorola) basic_machine=m68k-motorola ;; delta88) basic_machine=m88k-motorola os=-sysv3 ;; dicos) basic_machine=i686-pc os=-dicos ;; djgpp) basic_machine=i586-pc os=-msdosdjgpp ;; dpx20 | dpx20-*) basic_machine=rs6000-bull os=-bosx ;; dpx2* | dpx2*-bull) basic_machine=m68k-bull os=-sysv3 ;; ebmon29k) basic_machine=a29k-amd os=-ebmon ;; elxsi) basic_machine=elxsi-elxsi os=-bsd ;; encore | umax | mmax) basic_machine=ns32k-encore ;; es1800 | OSE68k | ose68k | ose | OSE) basic_machine=m68k-ericsson os=-ose ;; fx2800) basic_machine=i860-alliant ;; genix) basic_machine=ns32k-ns ;; gmicro) basic_machine=tron-gmicro os=-sysv ;; go32) basic_machine=i386-pc os=-go32 ;; h3050r* | hiux*) basic_machine=hppa1.1-hitachi os=-hiuxwe2 ;; h8300hms) basic_machine=h8300-hitachi os=-hms ;; h8300xray) basic_machine=h8300-hitachi os=-xray ;; h8500hms) basic_machine=h8500-hitachi os=-hms ;; harris) basic_machine=m88k-harris os=-sysv3 ;; hp300-*) basic_machine=m68k-hp ;; hp300bsd) basic_machine=m68k-hp os=-bsd ;; hp300hpux) basic_machine=m68k-hp os=-hpux ;; hp3k9[0-9][0-9] | hp9[0-9][0-9]) basic_machine=hppa1.0-hp ;; hp9k2[0-9][0-9] | hp9k31[0-9]) basic_machine=m68000-hp ;; hp9k3[2-9][0-9]) basic_machine=m68k-hp ;; hp9k6[0-9][0-9] | hp6[0-9][0-9]) basic_machine=hppa1.0-hp ;; hp9k7[0-79][0-9] | hp7[0-79][0-9]) basic_machine=hppa1.1-hp ;; hp9k78[0-9] | hp78[0-9]) # FIXME: really hppa2.0-hp basic_machine=hppa1.1-hp ;; hp9k8[67]1 | hp8[67]1 | hp9k80[24] | hp80[24] | hp9k8[78]9 | hp8[78]9 | hp9k893 | hp893) # FIXME: really hppa2.0-hp basic_machine=hppa1.1-hp ;; hp9k8[0-9][13679] | hp8[0-9][13679]) basic_machine=hppa1.1-hp ;; hp9k8[0-9][0-9] | hp8[0-9][0-9]) basic_machine=hppa1.0-hp ;; hppa-next) os=-nextstep3 ;; hppaosf) basic_machine=hppa1.1-hp os=-osf ;; hppro) basic_machine=hppa1.1-hp os=-proelf ;; i370-ibm* | ibm*) basic_machine=i370-ibm ;; i*86v32) basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'` os=-sysv32 ;; i*86v4*) basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'` os=-sysv4 ;; i*86v) basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'` os=-sysv ;; i*86sol2) basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'` os=-solaris2 ;; i386mach) basic_machine=i386-mach os=-mach ;; i386-vsta | vsta) basic_machine=i386-unknown os=-vsta ;; iris | iris4d) basic_machine=mips-sgi case $os in -irix*) ;; *) os=-irix4 ;; esac ;; isi68 | isi) basic_machine=m68k-isi os=-sysv ;; m68knommu) basic_machine=m68k-unknown os=-linux ;; m68knommu-*) basic_machine=m68k-`echo $basic_machine | sed 's/^[^-]*-//'` os=-linux ;; m88k-omron*) basic_machine=m88k-omron ;; magnum | m3230) basic_machine=mips-mips os=-sysv ;; merlin) basic_machine=ns32k-utek os=-sysv ;; microblaze*) basic_machine=microblaze-xilinx ;; mingw64) basic_machine=x86_64-pc os=-mingw64 ;; mingw32) basic_machine=i686-pc os=-mingw32 ;; mingw32ce) basic_machine=arm-unknown os=-mingw32ce ;; miniframe) basic_machine=m68000-convergent ;; *mint | -mint[0-9]* | *MiNT | *MiNT[0-9]*) basic_machine=m68k-atari os=-mint ;; mips3*-*) basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'` ;; mips3*) basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'`-unknown ;; monitor) basic_machine=m68k-rom68k os=-coff ;; morphos) basic_machine=powerpc-unknown os=-morphos ;; msdos) basic_machine=i386-pc os=-msdos ;; ms1-*) basic_machine=`echo $basic_machine | sed -e 's/ms1-/mt-/'` ;; msys) basic_machine=i686-pc os=-msys ;; mvs) basic_machine=i370-ibm os=-mvs ;; nacl) basic_machine=le32-unknown os=-nacl ;; ncr3000) basic_machine=i486-ncr os=-sysv4 ;; netbsd386) basic_machine=i386-unknown os=-netbsd ;; netwinder) basic_machine=armv4l-rebel os=-linux ;; news | news700 | news800 | news900) basic_machine=m68k-sony os=-newsos ;; news1000) basic_machine=m68030-sony os=-newsos ;; news-3600 | risc-news) basic_machine=mips-sony os=-newsos ;; necv70) basic_machine=v70-nec os=-sysv ;; next | m*-next ) basic_machine=m68k-next case $os in -nextstep* ) ;; -ns2*) os=-nextstep2 ;; *) os=-nextstep3 ;; esac ;; nh3000) basic_machine=m68k-harris os=-cxux ;; nh[45]000) basic_machine=m88k-harris os=-cxux ;; nindy960) basic_machine=i960-intel os=-nindy ;; mon960) basic_machine=i960-intel os=-mon960 ;; nonstopux) basic_machine=mips-compaq os=-nonstopux ;; np1) basic_machine=np1-gould ;; neo-tandem) basic_machine=neo-tandem ;; nse-tandem) basic_machine=nse-tandem ;; nsr-tandem) basic_machine=nsr-tandem ;; op50n-* | op60c-*) basic_machine=hppa1.1-oki os=-proelf ;; openrisc | openrisc-*) basic_machine=or32-unknown ;; os400) basic_machine=powerpc-ibm os=-os400 ;; OSE68000 | ose68000) basic_machine=m68000-ericsson os=-ose ;; os68k) basic_machine=m68k-none os=-os68k ;; pa-hitachi) basic_machine=hppa1.1-hitachi os=-hiuxwe2 ;; paragon) basic_machine=i860-intel os=-osf ;; parisc) basic_machine=hppa-unknown os=-linux ;; parisc-*) basic_machine=hppa-`echo $basic_machine | sed 's/^[^-]*-//'` os=-linux ;; pbd) basic_machine=sparc-tti ;; pbb) basic_machine=m68k-tti ;; pc532 | pc532-*) basic_machine=ns32k-pc532 ;; pc98) basic_machine=i386-pc ;; pc98-*) basic_machine=i386-`echo $basic_machine | sed 's/^[^-]*-//'` ;; pentium | p5 | k5 | k6 | nexgen | viac3) basic_machine=i586-pc ;; pentiumpro | p6 | 6x86 | athlon | athlon_*) basic_machine=i686-pc ;; pentiumii | pentium2 | pentiumiii | pentium3) basic_machine=i686-pc ;; pentium4) basic_machine=i786-pc ;; pentium-* | p5-* | k5-* | k6-* | nexgen-* | viac3-*) basic_machine=i586-`echo $basic_machine | sed 's/^[^-]*-//'` ;; pentiumpro-* | p6-* | 6x86-* | athlon-*) basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'` ;; pentiumii-* | pentium2-* | pentiumiii-* | pentium3-*) basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'` ;; pentium4-*) basic_machine=i786-`echo $basic_machine | sed 's/^[^-]*-//'` ;; pn) basic_machine=pn-gould ;; power) basic_machine=power-ibm ;; ppc | ppcbe) basic_machine=powerpc-unknown ;; ppc-* | ppcbe-*) basic_machine=powerpc-`echo $basic_machine | sed 's/^[^-]*-//'` ;; ppcle | powerpclittle | ppc-le | powerpc-little) basic_machine=powerpcle-unknown ;; ppcle-* | powerpclittle-*) basic_machine=powerpcle-`echo $basic_machine | sed 's/^[^-]*-//'` ;; ppc64) basic_machine=powerpc64-unknown ;; ppc64-*) basic_machine=powerpc64-`echo $basic_machine | sed 's/^[^-]*-//'` ;; ppc64le | powerpc64little | ppc64-le | powerpc64-little) basic_machine=powerpc64le-unknown ;; ppc64le-* | powerpc64little-*) basic_machine=powerpc64le-`echo $basic_machine | sed 's/^[^-]*-//'` ;; ps2) basic_machine=i386-ibm ;; pw32) basic_machine=i586-unknown os=-pw32 ;; rdos | rdos64) basic_machine=x86_64-pc os=-rdos ;; rdos32) basic_machine=i386-pc os=-rdos ;; rom68k) basic_machine=m68k-rom68k os=-coff ;; rm[46]00) basic_machine=mips-siemens ;; rtpc | rtpc-*) basic_machine=romp-ibm ;; s390 | s390-*) basic_machine=s390-ibm ;; s390x | s390x-*) basic_machine=s390x-ibm ;; sa29200) basic_machine=a29k-amd os=-udi ;; sb1) basic_machine=mipsisa64sb1-unknown ;; sb1el) basic_machine=mipsisa64sb1el-unknown ;; sde) basic_machine=mipsisa32-sde os=-elf ;; sei) basic_machine=mips-sei os=-seiux ;; sequent) basic_machine=i386-sequent ;; sh) basic_machine=sh-hitachi os=-hms ;; sh5el) basic_machine=sh5le-unknown ;; sh64) basic_machine=sh64-unknown ;; sparclite-wrs | simso-wrs) basic_machine=sparclite-wrs os=-vxworks ;; sps7) basic_machine=m68k-bull os=-sysv2 ;; spur) basic_machine=spur-unknown ;; st2000) basic_machine=m68k-tandem ;; stratus) basic_machine=i860-stratus os=-sysv4 ;; strongarm-* | thumb-*) basic_machine=arm-`echo $basic_machine | sed 's/^[^-]*-//'` ;; sun2) basic_machine=m68000-sun ;; sun2os3) basic_machine=m68000-sun os=-sunos3 ;; sun2os4) basic_machine=m68000-sun os=-sunos4 ;; sun3os3) basic_machine=m68k-sun os=-sunos3 ;; sun3os4) basic_machine=m68k-sun os=-sunos4 ;; sun4os3) basic_machine=sparc-sun os=-sunos3 ;; sun4os4) basic_machine=sparc-sun os=-sunos4 ;; sun4sol2) basic_machine=sparc-sun os=-solaris2 ;; sun3 | sun3-*) basic_machine=m68k-sun ;; sun4) basic_machine=sparc-sun ;; sun386 | sun386i | roadrunner) basic_machine=i386-sun ;; sv1) basic_machine=sv1-cray os=-unicos ;; symmetry) basic_machine=i386-sequent os=-dynix ;; t3e) basic_machine=alphaev5-cray os=-unicos ;; t90) basic_machine=t90-cray os=-unicos ;; tile*) basic_machine=$basic_machine-unknown os=-linux-gnu ;; tx39) basic_machine=mipstx39-unknown ;; tx39el) basic_machine=mipstx39el-unknown ;; toad1) basic_machine=pdp10-xkl os=-tops20 ;; tower | tower-32) basic_machine=m68k-ncr ;; tpf) basic_machine=s390x-ibm os=-tpf ;; udi29k) basic_machine=a29k-amd os=-udi ;; ultra3) basic_machine=a29k-nyu os=-sym1 ;; v810 | necv810) basic_machine=v810-nec os=-none ;; vaxv) basic_machine=vax-dec os=-sysv ;; vms) basic_machine=vax-dec os=-vms ;; vpp*|vx|vx-*) basic_machine=f301-fujitsu ;; vxworks960) basic_machine=i960-wrs os=-vxworks ;; vxworks68) basic_machine=m68k-wrs os=-vxworks ;; vxworks29k) basic_machine=a29k-wrs os=-vxworks ;; w65*) basic_machine=w65-wdc os=-none ;; w89k-*) basic_machine=hppa1.1-winbond os=-proelf ;; xbox) basic_machine=i686-pc os=-mingw32 ;; xps | xps100) basic_machine=xps100-honeywell ;; xscale-* | xscalee[bl]-*) basic_machine=`echo $basic_machine | sed 's/^xscale/arm/'` ;; ymp) basic_machine=ymp-cray os=-unicos ;; z8k-*-coff) basic_machine=z8k-unknown os=-sim ;; z80-*-coff) basic_machine=z80-unknown os=-sim ;; none) basic_machine=none-none os=-none ;; # Here we handle the default manufacturer of certain CPU types. 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When you make and distribute a # modified version of the Autoconf Macro, you may extend this special # exception to the GPL to apply to your modified version as well. #serial 12 AC_DEFUN([AX_CREATE_PKGCONFIG_INFO],[dnl AS_VAR_PUSHDEF([PKGCONFIG_suffix],[ax_create_pkgconfig_suffix])dnl AS_VAR_PUSHDEF([PKGCONFIG_libdir],[ax_create_pkgconfig_libdir])dnl AS_VAR_PUSHDEF([PKGCONFIG_libfile],[ax_create_pkgconfig_libfile])dnl AS_VAR_PUSHDEF([PKGCONFIG_libname],[ax_create_pkgconfig_libname])dnl AS_VAR_PUSHDEF([PKGCONFIG_version],[ax_create_pkgconfig_version])dnl AS_VAR_PUSHDEF([PKGCONFIG_description],[ax_create_pkgconfig_description])dnl AS_VAR_PUSHDEF([PKGCONFIG_requires],[ax_create_pkgconfig_requires])dnl AS_VAR_PUSHDEF([PKGCONFIG_pkglibs],[ax_create_pkgconfig_pkglibs])dnl AS_VAR_PUSHDEF([PKGCONFIG_libs],[ax_create_pkgconfig_libs])dnl AS_VAR_PUSHDEF([PKGCONFIG_ldflags],[ax_create_pkgconfig_ldflags])dnl AS_VAR_PUSHDEF([PKGCONFIG_cppflags],[ax_create_pkgconfig_cppflags])dnl AS_VAR_PUSHDEF([PKGCONFIG_generate],[ax_create_pkgconfig_generate])dnl AS_VAR_PUSHDEF([PKGCONFIG_src_libdir],[ax_create_pkgconfig_src_libdir])dnl AS_VAR_PUSHDEF([PKGCONFIG_src_headers],[ax_create_pkgconfig_src_headers])dnl # we need the expanded forms... test "x$prefix" = xNONE && prefix=$ac_default_prefix test "x$exec_prefix" = xNONE && exec_prefix='${prefix}' AC_MSG_CHECKING(our pkgconfig libname) test ".$PKGCONFIG_libname" != "." || \ PKGCONFIG_libname="ifelse($1,,${PACKAGE_NAME},`basename $1 .pc`)" test ".$PKGCONFIG_libname" != "." || \ PKGCONFIG_libname="$PACKAGE" PKGCONFIG_libname=`eval echo "$PKGCONFIG_libname"` PKGCONFIG_libname=`eval echo "$PKGCONFIG_libname"` AC_MSG_RESULT($PKGCONFIG_libname) AC_MSG_CHECKING(our pkgconfig version) test ".$PKGCONFIG_version" != "." || \ PKGCONFIG_version="${PACKAGE_VERSION}" test ".$PKGCONFIG_version" != "." || \ PKGCONFIG_version="$VERSION" PKGCONFIG_version=`eval echo "$PKGCONFIG_version"` PKGCONFIG_version=`eval echo "$PKGCONFIG_version"` AC_MSG_RESULT($PKGCONFIG_version) AC_MSG_CHECKING(our pkgconfig_libdir) test ".$pkgconfig_libdir" = "." && \ pkgconfig_libdir='${libdir}/pkgconfig' PKGCONFIG_libdir=`eval echo "$pkgconfig_libdir"` PKGCONFIG_libdir=`eval echo "$PKGCONFIG_libdir"` PKGCONFIG_libdir=`eval echo "$PKGCONFIG_libdir"` AC_MSG_RESULT($pkgconfig_libdir) test "$pkgconfig_libdir" != "$PKGCONFIG_libdir" && ( AC_MSG_RESULT(expanded our pkgconfig_libdir... $PKGCONFIG_libdir)) AC_SUBST([pkgconfig_libdir]) AC_MSG_CHECKING(our pkgconfig_libfile) test ".$pkgconfig_libfile" != "." || \ pkgconfig_libfile="ifelse($1,,$PKGCONFIG_libname.pc,`basename $1`)" PKGCONFIG_libfile=`eval echo "$pkgconfig_libfile"` PKGCONFIG_libfile=`eval echo "$PKGCONFIG_libfile"` AC_MSG_RESULT($pkgconfig_libfile) test "$pkgconfig_libfile" != "$PKGCONFIG_libfile" && ( AC_MSG_RESULT(expanded our pkgconfig_libfile... $PKGCONFIG_libfile)) AC_SUBST([pkgconfig_libfile]) AC_MSG_CHECKING(our package / suffix) PKGCONFIG_suffix="$program_suffix" test ".$PKGCONFIG_suffix" != .NONE || PKGCONFIG_suffix="" AC_MSG_RESULT(${PACKAGE_NAME} / ${PKGCONFIG_suffix}) AC_MSG_CHECKING(our pkgconfig description) PKGCONFIG_description="ifelse($4,,$PACKAGE_SUMMARY,$4)" test ".$PKGCONFIG_description" != "." || \ PKGCONFIG_description="$PKGCONFIG_libname Library" PKGCONFIG_description=`eval echo "$PKGCONFIG_description"` PKGCONFIG_description=`eval echo "$PKGCONFIG_description"` AC_MSG_RESULT($PKGCONFIG_description) AC_MSG_CHECKING(our pkgconfig requires) PKGCONFIG_requires="ifelse($2,,$PACKAGE_REQUIRES,$2)" PKGCONFIG_requires=`eval echo "$PKGCONFIG_requires"` PKGCONFIG_requires=`eval echo "$PKGCONFIG_requires"` AC_MSG_RESULT($PKGCONFIG_requires) AC_MSG_CHECKING(our pkgconfig ext libs) PKGCONFIG_pkglibs="$PACKAGE_LIBS" test ".$PKGCONFIG_pkglibs" != "." || PKGCONFIG_pkglibs="-l$PKGCONFIG_libname" PKGCONFIG_libs="ifelse($3,,$PKGCONFIG_pkglibs $LIBS,$3)" PKGCONFIG_libs=`eval echo "$PKGCONFIG_libs"` PKGCONFIG_libs=`eval echo "$PKGCONFIG_libs"` AC_MSG_RESULT($PKGCONFIG_libs) AC_MSG_CHECKING(our pkgconfig cppflags) PKGCONFIG_cppflags="ifelse($5,,$PACKAGE_CFLAGS,$5)" PKGCONFIG_cppflags=`eval echo "$PKGCONFIG_cppflags"` PKGCONFIG_cppflags=`eval echo "$PKGCONFIG_cppflags"` AC_MSG_RESULT($PKGCONFIG_cppflags) AC_MSG_CHECKING(our pkgconfig ldflags) PKGCONFIG_ldflags="ifelse($6,,$PACKAGE_LDFLAGS,$5)" PKGCONFIG_ldflags=`eval echo "$PKGCONFIG_ldflags"` PKGCONFIG_ldflags=`eval echo "$PKGCONFIG_ldflags"` AC_MSG_RESULT($PKGCONFIG_ldflags) test ".$PKGCONFIG_generate" != "." || \ PKGCONFIG_generate="ifelse($1,,$PKGCONFIG_libname.pc,$1)" PKGCONFIG_generate=`eval echo "$PKGCONFIG_generate"` PKGCONFIG_generate=`eval echo "$PKGCONFIG_generate"` test "$pkgconfig_libfile" != "$PKGCONFIG_generate" && ( AC_MSG_RESULT(generate the pkgconfig later... $PKGCONFIG_generate)) if test ".$PKGCONFIG_src_libdir" = "." ; then PKGCONFIG_src_libdir=`pwd` PKGCONFIG_src_libdir=`AS_DIRNAME("$PKGCONFIG_src_libdir/$PKGCONFIG_generate")` test ! 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Vaughan, 2004 # # This file is free software; the Free Software Foundation gives # unlimited permission to copy and/or distribute it, with or without # modifications, as long as this notice is preserved. # serial 6 ltsugar.m4 # This is to help aclocal find these macros, as it can't see m4_define. AC_DEFUN([LTSUGAR_VERSION], [m4_if([0.1])]) # lt_join(SEP, ARG1, [ARG2...]) # ----------------------------- # Produce ARG1SEPARG2...SEPARGn, omitting [] arguments and their # associated separator. # Needed until we can rely on m4_join from Autoconf 2.62, since all earlier # versions in m4sugar had bugs. m4_define([lt_join], [m4_if([$#], [1], [], [$#], [2], [[$2]], [m4_if([$2], [], [], [[$2]_])$0([$1], m4_shift(m4_shift($@)))])]) m4_define([_lt_join], [m4_if([$#$2], [2], [], [m4_if([$2], [], [], [[$1$2]])$0([$1], m4_shift(m4_shift($@)))])]) # lt_car(LIST) # lt_cdr(LIST) # ------------ # Manipulate m4 lists. # These macros are necessary as long as will still need to support # Autoconf-2.59 which quotes differently. m4_define([lt_car], [[$1]]) m4_define([lt_cdr], [m4_if([$#], 0, [m4_fatal([$0: cannot be called without arguments])], [$#], 1, [], [m4_dquote(m4_shift($@))])]) m4_define([lt_unquote], $1) # lt_append(MACRO-NAME, STRING, [SEPARATOR]) # ------------------------------------------ # Redefine MACRO-NAME to hold its former content plus `SEPARATOR'`STRING'. # Note that neither SEPARATOR nor STRING are expanded; they are appended # to MACRO-NAME as is (leaving the expansion for when MACRO-NAME is invoked). # No SEPARATOR is output if MACRO-NAME was previously undefined (different # than defined and empty). # # This macro is needed until we can rely on Autoconf 2.62, since earlier # versions of m4sugar mistakenly expanded SEPARATOR but not STRING. m4_define([lt_append], [m4_define([$1], m4_ifdef([$1], [m4_defn([$1])[$3]])[$2])]) # lt_combine(SEP, PREFIX-LIST, INFIX, SUFFIX1, [SUFFIX2...]) # ---------------------------------------------------------- # Produce a SEP delimited list of all paired combinations of elements of # PREFIX-LIST with SUFFIX1 through SUFFIXn. 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See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with GNU Libtool; see the file COPYING. If not, a copy # can be downloaded from http://www.gnu.org/licenses/gpl.html, or # obtained by writing to the Free Software Foundation, Inc., # 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. ]) # serial 57 LT_INIT # LT_PREREQ(VERSION) # ------------------ # Complain and exit if this libtool version is less that VERSION. m4_defun([LT_PREREQ], [m4_if(m4_version_compare(m4_defn([LT_PACKAGE_VERSION]), [$1]), -1, [m4_default([$3], [m4_fatal([Libtool version $1 or higher is required], 63)])], [$2])]) # _LT_CHECK_BUILDDIR # ------------------ # Complain if the absolute build directory name contains unusual characters m4_defun([_LT_CHECK_BUILDDIR], [case `pwd` in *\ * | *\ *) AC_MSG_WARN([Libtool does not cope well with whitespace in `pwd`]) ;; esac ]) # LT_INIT([OPTIONS]) # ------------------ AC_DEFUN([LT_INIT], [AC_PREREQ([2.58])dnl We use AC_INCLUDES_DEFAULT AC_REQUIRE([AC_CONFIG_AUX_DIR_DEFAULT])dnl AC_BEFORE([$0], [LT_LANG])dnl AC_BEFORE([$0], [LT_OUTPUT])dnl AC_BEFORE([$0], [LTDL_INIT])dnl m4_require([_LT_CHECK_BUILDDIR])dnl dnl Autoconf doesn't catch unexpanded LT_ macros by default: m4_pattern_forbid([^_?LT_[A-Z_]+$])dnl m4_pattern_allow([^(_LT_EOF|LT_DLGLOBAL|LT_DLLAZY_OR_NOW|LT_MULTI_MODULE)$])dnl dnl aclocal doesn't pull ltoptions.m4, ltsugar.m4, or ltversion.m4 dnl unless we require an AC_DEFUNed macro: AC_REQUIRE([LTOPTIONS_VERSION])dnl AC_REQUIRE([LTSUGAR_VERSION])dnl AC_REQUIRE([LTVERSION_VERSION])dnl AC_REQUIRE([LTOBSOLETE_VERSION])dnl m4_require([_LT_PROG_LTMAIN])dnl _LT_SHELL_INIT([SHELL=${CONFIG_SHELL-/bin/sh}]) dnl Parse OPTIONS _LT_SET_OPTIONS([$0], [$1]) # This can be used to rebuild libtool when needed LIBTOOL_DEPS="$ltmain" # Always use our own libtool. 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#endif int fnord () { return 42; } int main () { void *self = dlopen (0, LT_DLGLOBAL|LT_DLLAZY_OR_NOW); int status = $lt_dlunknown; if (self) { if (dlsym (self,"fnord")) status = $lt_dlno_uscore; else { if (dlsym( self,"_fnord")) status = $lt_dlneed_uscore; else puts (dlerror ()); } /* dlclose (self); */ } else puts (dlerror ()); return status; }] _LT_EOF if AC_TRY_EVAL(ac_link) && test -s conftest${ac_exeext} 2>/dev/null; then (./conftest; exit; ) >&AS_MESSAGE_LOG_FD 2>/dev/null lt_status=$? case x$lt_status in x$lt_dlno_uscore) $1 ;; x$lt_dlneed_uscore) $2 ;; x$lt_dlunknown|x*) $3 ;; esac else : # compilation failed $3 fi fi rm -fr conftest* ])# _LT_TRY_DLOPEN_SELF # LT_SYS_DLOPEN_SELF # ------------------ AC_DEFUN([LT_SYS_DLOPEN_SELF], [m4_require([_LT_HEADER_DLFCN])dnl if test "x$enable_dlopen" != xyes; then enable_dlopen=unknown enable_dlopen_self=unknown enable_dlopen_self_static=unknown else lt_cv_dlopen=no lt_cv_dlopen_libs= case $host_os in beos*) lt_cv_dlopen="load_add_on" lt_cv_dlopen_libs= lt_cv_dlopen_self=yes ;; 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esac # HP-UX runs *really* slowly unless shared libraries are mode 555, ... postinstall_cmds='chmod 555 $lib' # or fails outright, so override atomically: install_override_mode=555 ;; interix[[3-9]]*) version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' dynamic_linker='Interix 3.x ld.so.1 (PE, like ELF)' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=no hardcode_into_libs=yes ;; irix5* | irix6* | nonstopux*) case $host_os in nonstopux*) version_type=nonstopux ;; *) if test "$lt_cv_prog_gnu_ld" = yes; then version_type=linux # correct to gnu/linux during the next big refactor else version_type=irix fi ;; esac need_lib_prefix=no need_version=no soname_spec='${libname}${release}${shared_ext}$major' library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${release}${shared_ext} $libname${shared_ext}' case $host_os in irix5* | nonstopux*) libsuff= shlibsuff= ;; *) case $LD in # libtool.m4 will add one of these switches to LD *-32|*"-32 "|*-melf32bsmip|*"-melf32bsmip ") libsuff= shlibsuff= libmagic=32-bit;; *-n32|*"-n32 "|*-melf32bmipn32|*"-melf32bmipn32 ") libsuff=32 shlibsuff=N32 libmagic=N32;; *-64|*"-64 "|*-melf64bmip|*"-melf64bmip ") libsuff=64 shlibsuff=64 libmagic=64-bit;; *) libsuff= shlibsuff= libmagic=never-match;; esac ;; esac shlibpath_var=LD_LIBRARY${shlibsuff}_PATH shlibpath_overrides_runpath=no sys_lib_search_path_spec="/usr/lib${libsuff} /lib${libsuff} /usr/local/lib${libsuff}" sys_lib_dlsearch_path_spec="/usr/lib${libsuff} /lib${libsuff}" hardcode_into_libs=yes ;; # No shared lib support for Linux oldld, aout, or coff. linux*oldld* | linux*aout* | linux*coff*) dynamic_linker=no ;; # This must be glibc/ELF. linux* | k*bsd*-gnu | kopensolaris*-gnu | gnu*) version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' finish_cmds='PATH="\$PATH:/sbin" ldconfig -n $libdir' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=no # Some binutils ld are patched to set DT_RUNPATH AC_CACHE_VAL([lt_cv_shlibpath_overrides_runpath], [lt_cv_shlibpath_overrides_runpath=no save_LDFLAGS=$LDFLAGS save_libdir=$libdir eval "libdir=/foo; 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newsos6) version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=yes ;; *nto* | *qnx*) version_type=qnx need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=no hardcode_into_libs=yes dynamic_linker='ldqnx.so' ;; openbsd*) version_type=sunos sys_lib_dlsearch_path_spec="/usr/lib" need_lib_prefix=no # Some older versions of OpenBSD (3.3 at least) *do* need versioned libs. case $host_os in openbsd3.3 | openbsd3.3.*) need_version=yes ;; *) need_version=no ;; esac library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${shared_ext}$versuffix' finish_cmds='PATH="\$PATH:/sbin" ldconfig -m $libdir' shlibpath_var=LD_LIBRARY_PATH if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; 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*) lt_cv_deplibs_check_method='file_magic (s[[0-9]][[0-9]][[0-9]]|PA-RISC[[0-9]]\.[[0-9]]) shared library' lt_cv_file_magic_test_file=/usr/lib/libc.sl ;; esac ;; interix[[3-9]]*) # PIC code is broken on Interix 3.x, that's why |\.a not |_pic\.a here lt_cv_deplibs_check_method='match_pattern /lib[[^/]]+(\.so|\.a)$' ;; irix5* | irix6* | nonstopux*) case $LD in *-32|*"-32 ") libmagic=32-bit;; *-n32|*"-n32 ") libmagic=N32;; *-64|*"-64 ") libmagic=64-bit;; *) libmagic=never-match;; esac lt_cv_deplibs_check_method=pass_all ;; # This must be glibc/ELF. linux* | k*bsd*-gnu | kopensolaris*-gnu | gnu*) lt_cv_deplibs_check_method=pass_all ;; netbsd* | netbsdelf*-gnu) if echo __ELF__ | $CC -E - | $GREP __ELF__ > /dev/null; then lt_cv_deplibs_check_method='match_pattern /lib[[^/]]+(\.so\.[[0-9]]+\.[[0-9]]+|_pic\.a)$' else lt_cv_deplibs_check_method='match_pattern /lib[[^/]]+(\.so|_pic\.a)$' fi ;; newos6*) lt_cv_deplibs_check_method='file_magic ELF [[0-9]][[0-9]]*-bit [[ML]]SB (executable|dynamic lib)' lt_cv_file_magic_cmd=/usr/bin/file lt_cv_file_magic_test_file=/usr/lib/libnls.so ;; *nto* | *qnx*) lt_cv_deplibs_check_method=pass_all ;; openbsd*) if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then lt_cv_deplibs_check_method='match_pattern /lib[[^/]]+(\.so\.[[0-9]]+\.[[0-9]]+|\.so|_pic\.a)$' else lt_cv_deplibs_check_method='match_pattern /lib[[^/]]+(\.so\.[[0-9]]+\.[[0-9]]+|_pic\.a)$' fi ;; osf3* | osf4* | osf5*) lt_cv_deplibs_check_method=pass_all ;; rdos*) lt_cv_deplibs_check_method=pass_all ;; solaris*) lt_cv_deplibs_check_method=pass_all ;; sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX* | sysv4*uw2*) lt_cv_deplibs_check_method=pass_all ;; sysv4 | sysv4.3*) case $host_vendor in motorola) lt_cv_deplibs_check_method='file_magic ELF [[0-9]][[0-9]]*-bit [[ML]]SB (shared object|dynamic lib) M[[0-9]][[0-9]]* Version [[0-9]]' lt_cv_file_magic_test_file=`echo /usr/lib/libc.so*` ;; ncr) lt_cv_deplibs_check_method=pass_all ;; sequent) lt_cv_file_magic_cmd='/bin/file' lt_cv_deplibs_check_method='file_magic ELF [[0-9]][[0-9]]*-bit [[LM]]SB (shared object|dynamic lib )' ;; sni) lt_cv_file_magic_cmd='/bin/file' lt_cv_deplibs_check_method="file_magic ELF [[0-9]][[0-9]]*-bit [[LM]]SB dynamic lib" lt_cv_file_magic_test_file=/lib/libc.so ;; siemens) lt_cv_deplibs_check_method=pass_all ;; pc) lt_cv_deplibs_check_method=pass_all ;; esac ;; tpf*) lt_cv_deplibs_check_method=pass_all ;; esac ]) file_magic_glob= want_nocaseglob=no if test "$build" = "$host"; then case $host_os in mingw* | pw32*) if ( shopt | grep nocaseglob ) >/dev/null 2>&1; then want_nocaseglob=yes else file_magic_glob=`echo aAbBcCdDeEfFgGhHiIjJkKlLmMnNoOpPqQrRsStTuUvVwWxXyYzZ | $SED -e "s/\(..\)/s\/[[\1]]\/[[\1]]\/g;/g"` fi ;; esac fi file_magic_cmd=$lt_cv_file_magic_cmd deplibs_check_method=$lt_cv_deplibs_check_method test -z "$deplibs_check_method" && deplibs_check_method=unknown _LT_DECL([], [deplibs_check_method], [1], [Method to check whether dependent libraries are shared objects]) _LT_DECL([], [file_magic_cmd], [1], [Command to use when deplibs_check_method = "file_magic"]) _LT_DECL([], [file_magic_glob], [1], [How to find potential files when deplibs_check_method = "file_magic"]) _LT_DECL([], [want_nocaseglob], [1], [Find potential files using nocaseglob when deplibs_check_method = "file_magic"]) ])# _LT_CHECK_MAGIC_METHOD # LT_PATH_NM # ---------- # find the pathname to a BSD- or MS-compatible name lister AC_DEFUN([LT_PATH_NM], [AC_REQUIRE([AC_PROG_CC])dnl AC_CACHE_CHECK([for BSD- or MS-compatible name lister (nm)], lt_cv_path_NM, [if test -n "$NM"; then # Let the user override the test. lt_cv_path_NM="$NM" else lt_nm_to_check="${ac_tool_prefix}nm" if test -n "$ac_tool_prefix" && test "$build" = "$host"; then lt_nm_to_check="$lt_nm_to_check nm" fi for lt_tmp_nm in $lt_nm_to_check; do lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR for ac_dir in $PATH /usr/ccs/bin/elf /usr/ccs/bin /usr/ucb /bin; do IFS="$lt_save_ifs" test -z "$ac_dir" && ac_dir=. tmp_nm="$ac_dir/$lt_tmp_nm" if test -f "$tmp_nm" || test -f "$tmp_nm$ac_exeext" ; then # Check to see if the nm accepts a BSD-compat flag. # Adding the `sed 1q' prevents false positives on HP-UX, which says: # nm: unknown option "B" ignored # Tru64's nm complains that /dev/null is an invalid object file case `"$tmp_nm" -B /dev/null 2>&1 | sed '1q'` in */dev/null* | *'Invalid file or object type'*) lt_cv_path_NM="$tmp_nm -B" break ;; *) case `"$tmp_nm" -p /dev/null 2>&1 | sed '1q'` in */dev/null*) lt_cv_path_NM="$tmp_nm -p" break ;; *) lt_cv_path_NM=${lt_cv_path_NM="$tmp_nm"} # keep the first match, but continue # so that we can try to find one that supports BSD flags ;; esac ;; esac fi done IFS="$lt_save_ifs" done : ${lt_cv_path_NM=no} fi]) if test "$lt_cv_path_NM" != "no"; then NM="$lt_cv_path_NM" else # Didn't find any BSD compatible name lister, look for dumpbin. if test -n "$DUMPBIN"; then : # Let the user override the test. else AC_CHECK_TOOLS(DUMPBIN, [dumpbin "link -dump"], :) case `$DUMPBIN -symbols /dev/null 2>&1 | sed '1q'` in *COFF*) DUMPBIN="$DUMPBIN -symbols" ;; *) DUMPBIN=: ;; esac fi AC_SUBST([DUMPBIN]) if test "$DUMPBIN" != ":"; then NM="$DUMPBIN" fi fi test -z "$NM" && NM=nm AC_SUBST([NM]) _LT_DECL([], [NM], [1], [A BSD- or MS-compatible name lister])dnl AC_CACHE_CHECK([the name lister ($NM) interface], [lt_cv_nm_interface], [lt_cv_nm_interface="BSD nm" echo "int some_variable = 0;" > conftest.$ac_ext (eval echo "\"\$as_me:$LINENO: $ac_compile\"" >&AS_MESSAGE_LOG_FD) (eval "$ac_compile" 2>conftest.err) cat conftest.err >&AS_MESSAGE_LOG_FD (eval echo "\"\$as_me:$LINENO: $NM \\\"conftest.$ac_objext\\\"\"" >&AS_MESSAGE_LOG_FD) (eval "$NM \"conftest.$ac_objext\"" 2>conftest.err > conftest.out) cat conftest.err >&AS_MESSAGE_LOG_FD (eval echo "\"\$as_me:$LINENO: output\"" >&AS_MESSAGE_LOG_FD) cat conftest.out >&AS_MESSAGE_LOG_FD if $GREP 'External.*some_variable' conftest.out > /dev/null; then lt_cv_nm_interface="MS dumpbin" fi rm -f conftest*]) ])# LT_PATH_NM # Old names: AU_ALIAS([AM_PROG_NM], [LT_PATH_NM]) AU_ALIAS([AC_PROG_NM], [LT_PATH_NM]) dnl aclocal-1.4 backwards compatibility: dnl AC_DEFUN([AM_PROG_NM], []) dnl AC_DEFUN([AC_PROG_NM], []) # _LT_CHECK_SHAREDLIB_FROM_LINKLIB # -------------------------------- # how to determine the name of the shared library # associated with a specific link library. # -- PORTME fill in with the dynamic library characteristics m4_defun([_LT_CHECK_SHAREDLIB_FROM_LINKLIB], [m4_require([_LT_DECL_EGREP]) m4_require([_LT_DECL_OBJDUMP]) m4_require([_LT_DECL_DLLTOOL]) AC_CACHE_CHECK([how to associate runtime and link libraries], lt_cv_sharedlib_from_linklib_cmd, [lt_cv_sharedlib_from_linklib_cmd='unknown' case $host_os in cygwin* | mingw* | pw32* | cegcc*) # two different shell functions defined in ltmain.sh # decide which to use based on capabilities of $DLLTOOL case `$DLLTOOL --help 2>&1` in *--identify-strict*) lt_cv_sharedlib_from_linklib_cmd=func_cygming_dll_for_implib ;; *) lt_cv_sharedlib_from_linklib_cmd=func_cygming_dll_for_implib_fallback ;; esac ;; *) # fallback: assume linklib IS sharedlib lt_cv_sharedlib_from_linklib_cmd="$ECHO" ;; esac ]) sharedlib_from_linklib_cmd=$lt_cv_sharedlib_from_linklib_cmd test -z "$sharedlib_from_linklib_cmd" && sharedlib_from_linklib_cmd=$ECHO _LT_DECL([], [sharedlib_from_linklib_cmd], [1], [Command to associate shared and link libraries]) ])# _LT_CHECK_SHAREDLIB_FROM_LINKLIB # _LT_PATH_MANIFEST_TOOL # ---------------------- # locate the manifest tool m4_defun([_LT_PATH_MANIFEST_TOOL], [AC_CHECK_TOOL(MANIFEST_TOOL, mt, :) test -z "$MANIFEST_TOOL" && MANIFEST_TOOL=mt AC_CACHE_CHECK([if $MANIFEST_TOOL is a manifest tool], [lt_cv_path_mainfest_tool], [lt_cv_path_mainfest_tool=no echo "$as_me:$LINENO: $MANIFEST_TOOL '-?'" >&AS_MESSAGE_LOG_FD $MANIFEST_TOOL '-?' 2>conftest.err > conftest.out cat conftest.err >&AS_MESSAGE_LOG_FD if $GREP 'Manifest Tool' conftest.out > /dev/null; then lt_cv_path_mainfest_tool=yes fi rm -f conftest*]) if test "x$lt_cv_path_mainfest_tool" != xyes; then MANIFEST_TOOL=: fi _LT_DECL([], [MANIFEST_TOOL], [1], [Manifest tool])dnl ])# _LT_PATH_MANIFEST_TOOL # LT_LIB_M # -------- # check for math library AC_DEFUN([LT_LIB_M], [AC_REQUIRE([AC_CANONICAL_HOST])dnl LIBM= case $host in *-*-beos* | *-*-cegcc* | *-*-cygwin* | *-*-haiku* | *-*-pw32* | *-*-darwin*) # These system don't have libm, or don't need it ;; *-ncr-sysv4.3*) AC_CHECK_LIB(mw, _mwvalidcheckl, LIBM="-lmw") AC_CHECK_LIB(m, cos, LIBM="$LIBM -lm") ;; *) AC_CHECK_LIB(m, cos, LIBM="-lm") ;; esac AC_SUBST([LIBM]) ])# LT_LIB_M # Old name: AU_ALIAS([AC_CHECK_LIBM], [LT_LIB_M]) dnl aclocal-1.4 backwards compatibility: dnl AC_DEFUN([AC_CHECK_LIBM], []) # _LT_COMPILER_NO_RTTI([TAGNAME]) # ------------------------------- m4_defun([_LT_COMPILER_NO_RTTI], [m4_require([_LT_TAG_COMPILER])dnl _LT_TAGVAR(lt_prog_compiler_no_builtin_flag, $1)= if test "$GCC" = yes; then case $cc_basename in nvcc*) _LT_TAGVAR(lt_prog_compiler_no_builtin_flag, $1)=' -Xcompiler -fno-builtin' ;; *) _LT_TAGVAR(lt_prog_compiler_no_builtin_flag, $1)=' -fno-builtin' ;; esac _LT_COMPILER_OPTION([if $compiler supports -fno-rtti -fno-exceptions], lt_cv_prog_compiler_rtti_exceptions, [-fno-rtti -fno-exceptions], [], [_LT_TAGVAR(lt_prog_compiler_no_builtin_flag, $1)="$_LT_TAGVAR(lt_prog_compiler_no_builtin_flag, $1) -fno-rtti -fno-exceptions"]) fi _LT_TAGDECL([no_builtin_flag], [lt_prog_compiler_no_builtin_flag], [1], [Compiler flag to turn off builtin functions]) ])# _LT_COMPILER_NO_RTTI # _LT_CMD_GLOBAL_SYMBOLS # ---------------------- m4_defun([_LT_CMD_GLOBAL_SYMBOLS], [AC_REQUIRE([AC_CANONICAL_HOST])dnl AC_REQUIRE([AC_PROG_CC])dnl AC_REQUIRE([AC_PROG_AWK])dnl AC_REQUIRE([LT_PATH_NM])dnl AC_REQUIRE([LT_PATH_LD])dnl m4_require([_LT_DECL_SED])dnl m4_require([_LT_DECL_EGREP])dnl m4_require([_LT_TAG_COMPILER])dnl # Check for command to grab the raw symbol name followed by C symbol from nm. AC_MSG_CHECKING([command to parse $NM output from $compiler object]) AC_CACHE_VAL([lt_cv_sys_global_symbol_pipe], [ # These are sane defaults that work on at least a few old systems. # [They come from Ultrix. What could be older than Ultrix?!! ;)] # Character class describing NM global symbol codes. symcode='[[BCDEGRST]]' # Regexp to match symbols that can be accessed directly from C. sympat='\([[_A-Za-z]][[_A-Za-z0-9]]*\)' # Define system-specific variables. case $host_os in aix*) symcode='[[BCDT]]' ;; cygwin* | mingw* | pw32* | cegcc*) symcode='[[ABCDGISTW]]' ;; hpux*) if test "$host_cpu" = ia64; then symcode='[[ABCDEGRST]]' fi ;; irix* | nonstopux*) symcode='[[BCDEGRST]]' ;; osf*) symcode='[[BCDEGQRST]]' ;; solaris*) symcode='[[BDRT]]' ;; sco3.2v5*) symcode='[[DT]]' ;; sysv4.2uw2*) symcode='[[DT]]' ;; sysv5* | sco5v6* | unixware* | OpenUNIX*) symcode='[[ABDT]]' ;; sysv4) symcode='[[DFNSTU]]' ;; esac # If we're using GNU nm, then use its standard symbol codes. case `$NM -V 2>&1` in *GNU* | *'with BFD'*) symcode='[[ABCDGIRSTW]]' ;; esac # Transform an extracted symbol line into a proper C declaration. # Some systems (esp. on ia64) link data and code symbols differently, # so use this general approach. lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" # Transform an extracted symbol line into symbol name and symbol address lt_cv_sys_global_symbol_to_c_name_address="sed -n -e 's/^: \([[^ ]]*\)[[ ]]*$/ {\\\"\1\\\", (void *) 0},/p' -e 's/^$symcode* \([[^ ]]*\) \([[^ ]]*\)$/ {\"\2\", (void *) \&\2},/p'" lt_cv_sys_global_symbol_to_c_name_address_lib_prefix="sed -n -e 's/^: \([[^ ]]*\)[[ ]]*$/ {\\\"\1\\\", (void *) 0},/p' -e 's/^$symcode* \([[^ ]]*\) \(lib[[^ ]]*\)$/ {\"\2\", (void *) \&\2},/p' -e 's/^$symcode* \([[^ ]]*\) \([[^ ]]*\)$/ {\"lib\2\", (void *) \&\2},/p'" # Handle CRLF in mingw tool chain opt_cr= case $build_os in mingw*) opt_cr=`$ECHO 'x\{0,1\}' | tr x '\015'` # option cr in regexp ;; esac # Try without a prefix underscore, then with it. for ac_symprfx in "" "_"; do # Transform symcode, sympat, and symprfx into a raw symbol and a C symbol. symxfrm="\\1 $ac_symprfx\\2 \\2" # Write the raw and C identifiers. if test "$lt_cv_nm_interface" = "MS dumpbin"; then # Fake it for dumpbin and say T for any non-static function # and D for any global variable. # Also find C++ and __fastcall symbols from MSVC++, # which start with @ or ?. lt_cv_sys_global_symbol_pipe="$AWK ['"\ " {last_section=section; section=\$ 3};"\ " /^COFF SYMBOL TABLE/{for(i in hide) delete hide[i]};"\ " /Section length .*#relocs.*(pick any)/{hide[last_section]=1};"\ " \$ 0!~/External *\|/{next};"\ " / 0+ UNDEF /{next}; / UNDEF \([^|]\)*()/{next};"\ " {if(hide[section]) next};"\ " {f=0}; \$ 0~/\(\).*\|/{f=1}; {printf f ? \"T \" : \"D \"};"\ " {split(\$ 0, a, /\||\r/); split(a[2], s)};"\ " s[1]~/^[@?]/{print s[1], s[1]; next};"\ " s[1]~prfx {split(s[1],t,\"@\"); print t[1], substr(t[1],length(prfx))}"\ " ' prfx=^$ac_symprfx]" else lt_cv_sys_global_symbol_pipe="sed -n -e 's/^.*[[ ]]\($symcode$symcode*\)[[ ]][[ ]]*$ac_symprfx$sympat$opt_cr$/$symxfrm/p'" fi lt_cv_sys_global_symbol_pipe="$lt_cv_sys_global_symbol_pipe | sed '/ __gnu_lto/d'" # Check to see that the pipe works correctly. pipe_works=no rm -f conftest* cat > conftest.$ac_ext <<_LT_EOF #ifdef __cplusplus extern "C" { #endif char nm_test_var; void nm_test_func(void); void nm_test_func(void){} #ifdef __cplusplus } #endif int main(){nm_test_var='a';nm_test_func();return(0);} _LT_EOF if AC_TRY_EVAL(ac_compile); then # Now try to grab the symbols. nlist=conftest.nm if AC_TRY_EVAL(NM conftest.$ac_objext \| "$lt_cv_sys_global_symbol_pipe" \> $nlist) && test -s "$nlist"; then # Try sorting and uniquifying the output. if sort "$nlist" | uniq > "$nlist"T; then mv -f "$nlist"T "$nlist" else rm -f "$nlist"T fi # Make sure that we snagged all the symbols we need. if $GREP ' nm_test_var$' "$nlist" >/dev/null; then if $GREP ' nm_test_func$' "$nlist" >/dev/null; then cat <<_LT_EOF > conftest.$ac_ext /* Keep this code in sync between libtool.m4, ltmain, lt_system.h, and tests. */ #if defined(_WIN32) || defined(__CYGWIN__) || defined(_WIN32_WCE) /* DATA imports from DLLs on WIN32 con't be const, because runtime relocations are performed -- see ld's documentation on pseudo-relocs. */ # define LT@&t@_DLSYM_CONST #elif defined(__osf__) /* This system does not cope well with relocations in const data. */ # define LT@&t@_DLSYM_CONST #else # define LT@&t@_DLSYM_CONST const #endif #ifdef __cplusplus extern "C" { #endif _LT_EOF # Now generate the symbol file. eval "$lt_cv_sys_global_symbol_to_cdecl"' < "$nlist" | $GREP -v main >> conftest.$ac_ext' cat <<_LT_EOF >> conftest.$ac_ext /* The mapping between symbol names and symbols. */ LT@&t@_DLSYM_CONST struct { const char *name; void *address; } lt__PROGRAM__LTX_preloaded_symbols[[]] = { { "@PROGRAM@", (void *) 0 }, _LT_EOF $SED "s/^$symcode$symcode* \(.*\) \(.*\)$/ {\"\2\", (void *) \&\2},/" < "$nlist" | $GREP -v main >> conftest.$ac_ext cat <<\_LT_EOF >> conftest.$ac_ext {0, (void *) 0} }; /* This works around a problem in FreeBSD linker */ #ifdef FREEBSD_WORKAROUND static const void *lt_preloaded_setup() { return lt__PROGRAM__LTX_preloaded_symbols; } #endif #ifdef __cplusplus } #endif _LT_EOF # Now try linking the two files. mv conftest.$ac_objext conftstm.$ac_objext lt_globsym_save_LIBS=$LIBS lt_globsym_save_CFLAGS=$CFLAGS LIBS="conftstm.$ac_objext" CFLAGS="$CFLAGS$_LT_TAGVAR(lt_prog_compiler_no_builtin_flag, $1)" if AC_TRY_EVAL(ac_link) && test -s conftest${ac_exeext}; then pipe_works=yes fi LIBS=$lt_globsym_save_LIBS CFLAGS=$lt_globsym_save_CFLAGS else echo "cannot find nm_test_func in $nlist" >&AS_MESSAGE_LOG_FD fi else echo "cannot find nm_test_var in $nlist" >&AS_MESSAGE_LOG_FD fi else echo "cannot run $lt_cv_sys_global_symbol_pipe" >&AS_MESSAGE_LOG_FD fi else echo "$progname: failed program was:" >&AS_MESSAGE_LOG_FD cat conftest.$ac_ext >&5 fi rm -rf conftest* conftst* # Do not use the global_symbol_pipe unless it works. if test "$pipe_works" = yes; then break else lt_cv_sys_global_symbol_pipe= fi done ]) if test -z "$lt_cv_sys_global_symbol_pipe"; then lt_cv_sys_global_symbol_to_cdecl= fi if test -z "$lt_cv_sys_global_symbol_pipe$lt_cv_sys_global_symbol_to_cdecl"; then AC_MSG_RESULT(failed) else AC_MSG_RESULT(ok) fi # Response file support. if test "$lt_cv_nm_interface" = "MS dumpbin"; then nm_file_list_spec='@' elif $NM --help 2>/dev/null | grep '[[@]]FILE' >/dev/null; then nm_file_list_spec='@' fi _LT_DECL([global_symbol_pipe], [lt_cv_sys_global_symbol_pipe], [1], [Take the output of nm and produce a listing of raw symbols and C names]) _LT_DECL([global_symbol_to_cdecl], [lt_cv_sys_global_symbol_to_cdecl], [1], [Transform the output of nm in a proper C declaration]) _LT_DECL([global_symbol_to_c_name_address], [lt_cv_sys_global_symbol_to_c_name_address], [1], [Transform the output of nm in a C name address pair]) _LT_DECL([global_symbol_to_c_name_address_lib_prefix], [lt_cv_sys_global_symbol_to_c_name_address_lib_prefix], [1], [Transform the output of nm in a C name address pair when lib prefix is needed]) _LT_DECL([], [nm_file_list_spec], [1], [Specify filename containing input files for $NM]) ]) # _LT_CMD_GLOBAL_SYMBOLS # _LT_COMPILER_PIC([TAGNAME]) # --------------------------- m4_defun([_LT_COMPILER_PIC], [m4_require([_LT_TAG_COMPILER])dnl _LT_TAGVAR(lt_prog_compiler_wl, $1)= _LT_TAGVAR(lt_prog_compiler_pic, $1)= _LT_TAGVAR(lt_prog_compiler_static, $1)= m4_if([$1], [CXX], [ # C++ specific cases for pic, static, wl, etc. if test "$GXX" = yes; then _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_static, $1)='-static' case $host_os in aix*) # All AIX code is PIC. if test "$host_cpu" = ia64; then # AIX 5 now supports IA64 processor _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' fi ;; amigaos*) case $host_cpu in powerpc) # see comment about AmigaOS4 .so support _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' ;; m68k) # FIXME: we need at least 68020 code to build shared libraries, but # adding the `-m68020' flag to GCC prevents building anything better, # like `-m68040'. _LT_TAGVAR(lt_prog_compiler_pic, $1)='-m68020 -resident32 -malways-restore-a4' ;; esac ;; beos* | irix5* | irix6* | nonstopux* | osf3* | osf4* | osf5*) # PIC is the default for these OSes. ;; mingw* | cygwin* | os2* | pw32* | cegcc*) # This hack is so that the source file can tell whether it is being # built for inclusion in a dll (and should export symbols for example). # Although the cygwin gcc ignores -fPIC, still need this for old-style # (--disable-auto-import) libraries m4_if([$1], [GCJ], [], [_LT_TAGVAR(lt_prog_compiler_pic, $1)='-DDLL_EXPORT']) ;; darwin* | rhapsody*) # PIC is the default on this platform # Common symbols not allowed in MH_DYLIB files _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fno-common' ;; *djgpp*) # DJGPP does not support shared libraries at all _LT_TAGVAR(lt_prog_compiler_pic, $1)= ;; haiku*) # PIC is the default for Haiku. # The "-static" flag exists, but is broken. _LT_TAGVAR(lt_prog_compiler_static, $1)= ;; interix[[3-9]]*) # Interix 3.x gcc -fpic/-fPIC options generate broken code. # Instead, we relocate shared libraries at runtime. ;; sysv4*MP*) if test -d /usr/nec; then _LT_TAGVAR(lt_prog_compiler_pic, $1)=-Kconform_pic fi ;; hpux*) # PIC is the default for 64-bit PA HP-UX, but not for 32-bit # PA HP-UX. On IA64 HP-UX, PIC is the default but the pic flag # sets the default TLS model and affects inlining. case $host_cpu in hppa*64*) ;; *) _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' ;; esac ;; *qnx* | *nto*) # QNX uses GNU C++, but need to define -shared option too, otherwise # it will coredump. _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC -shared' ;; *) _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' ;; esac else case $host_os in aix[[4-9]]*) # All AIX code is PIC. if test "$host_cpu" = ia64; then # AIX 5 now supports IA64 processor _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' else _LT_TAGVAR(lt_prog_compiler_static, $1)='-bnso -bI:/lib/syscalls.exp' fi ;; chorus*) case $cc_basename in cxch68*) # Green Hills C++ Compiler # _LT_TAGVAR(lt_prog_compiler_static, $1)="--no_auto_instantiation -u __main -u __premain -u _abort -r $COOL_DIR/lib/libOrb.a $MVME_DIR/lib/CC/libC.a $MVME_DIR/lib/classix/libcx.s.a" ;; esac ;; mingw* | cygwin* | os2* | pw32* | cegcc*) # This hack is so that the source file can tell whether it is being # built for inclusion in a dll (and should export symbols for example). m4_if([$1], [GCJ], [], [_LT_TAGVAR(lt_prog_compiler_pic, $1)='-DDLL_EXPORT']) ;; dgux*) case $cc_basename in ec++*) _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' ;; ghcx*) # Green Hills C++ Compiler _LT_TAGVAR(lt_prog_compiler_pic, $1)='-pic' ;; *) ;; esac ;; freebsd* | dragonfly*) # FreeBSD uses GNU C++ ;; hpux9* | hpux10* | hpux11*) case $cc_basename in CC*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_static, $1)='${wl}-a ${wl}archive' if test "$host_cpu" != ia64; then _LT_TAGVAR(lt_prog_compiler_pic, $1)='+Z' fi ;; aCC*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_static, $1)='${wl}-a ${wl}archive' case $host_cpu in hppa*64*|ia64*) # +Z the default ;; *) _LT_TAGVAR(lt_prog_compiler_pic, $1)='+Z' ;; esac ;; *) ;; esac ;; interix*) # This is c89, which is MS Visual C++ (no shared libs) # Anyone wants to do a port? ;; irix5* | irix6* | nonstopux*) case $cc_basename in CC*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_static, $1)='-non_shared' # CC pic flag -KPIC is the default. ;; *) ;; esac ;; linux* | k*bsd*-gnu | kopensolaris*-gnu | gnu*) case $cc_basename in KCC*) # KAI C++ Compiler _LT_TAGVAR(lt_prog_compiler_wl, $1)='--backend -Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' ;; ecpc* ) # old Intel C++ for x86_64 which still supported -KPIC. _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-static' ;; icpc* ) # Intel C++, used to be incompatible with GCC. # ICC 10 doesn't accept -KPIC any more. _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-static' ;; pgCC* | pgcpp*) # Portland Group C++ compiler _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fpic' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; cxx*) # Compaq C++ # Make sure the PIC flag is empty. It appears that all Alpha # Linux and Compaq Tru64 Unix objects are PIC. _LT_TAGVAR(lt_prog_compiler_pic, $1)= _LT_TAGVAR(lt_prog_compiler_static, $1)='-non_shared' ;; xlc* | xlC* | bgxl[[cC]]* | mpixl[[cC]]*) # IBM XL 8.0, 9.0 on PPC and BlueGene _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-qpic' _LT_TAGVAR(lt_prog_compiler_static, $1)='-qstaticlink' ;; *) case `$CC -V 2>&1 | sed 5q` in *Sun\ C*) # Sun C++ 5.9 _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Qoption ld ' ;; esac ;; esac ;; lynxos*) ;; m88k*) ;; mvs*) case $cc_basename in cxx*) _LT_TAGVAR(lt_prog_compiler_pic, $1)='-W c,exportall' ;; *) ;; esac ;; netbsd* | netbsdelf*-gnu) ;; *qnx* | *nto*) # QNX uses GNU C++, but need to define -shared option too, otherwise # it will coredump. _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC -shared' ;; osf3* | osf4* | osf5*) case $cc_basename in KCC*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='--backend -Wl,' ;; RCC*) # Rational C++ 2.4.1 _LT_TAGVAR(lt_prog_compiler_pic, $1)='-pic' ;; cxx*) # Digital/Compaq C++ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' # Make sure the PIC flag is empty. It appears that all Alpha # Linux and Compaq Tru64 Unix objects are PIC. _LT_TAGVAR(lt_prog_compiler_pic, $1)= _LT_TAGVAR(lt_prog_compiler_static, $1)='-non_shared' ;; *) ;; esac ;; psos*) ;; solaris*) case $cc_basename in CC* | sunCC*) # Sun C++ 4.2, 5.x and Centerline C++ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Qoption ld ' ;; gcx*) # Green Hills C++ Compiler _LT_TAGVAR(lt_prog_compiler_pic, $1)='-PIC' ;; *) ;; esac ;; sunos4*) case $cc_basename in CC*) # Sun C++ 4.x _LT_TAGVAR(lt_prog_compiler_pic, $1)='-pic' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; lcc*) # Lucid _LT_TAGVAR(lt_prog_compiler_pic, $1)='-pic' ;; *) ;; esac ;; sysv5* | unixware* | sco3.2v5* | sco5v6* | OpenUNIX*) case $cc_basename in CC*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; esac ;; tandem*) case $cc_basename in NCC*) # NonStop-UX NCC 3.20 _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' ;; *) ;; esac ;; vxworks*) ;; *) _LT_TAGVAR(lt_prog_compiler_can_build_shared, $1)=no ;; esac fi ], [ if test "$GCC" = yes; then _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_static, $1)='-static' case $host_os in aix*) # All AIX code is PIC. if test "$host_cpu" = ia64; then # AIX 5 now supports IA64 processor _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' fi ;; amigaos*) case $host_cpu in powerpc) # see comment about AmigaOS4 .so support _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' ;; m68k) # FIXME: we need at least 68020 code to build shared libraries, but # adding the `-m68020' flag to GCC prevents building anything better, # like `-m68040'. _LT_TAGVAR(lt_prog_compiler_pic, $1)='-m68020 -resident32 -malways-restore-a4' ;; esac ;; beos* | irix5* | irix6* | nonstopux* | osf3* | osf4* | osf5*) # PIC is the default for these OSes. ;; mingw* | cygwin* | pw32* | os2* | cegcc*) # This hack is so that the source file can tell whether it is being # built for inclusion in a dll (and should export symbols for example). # Although the cygwin gcc ignores -fPIC, still need this for old-style # (--disable-auto-import) libraries m4_if([$1], [GCJ], [], [_LT_TAGVAR(lt_prog_compiler_pic, $1)='-DDLL_EXPORT']) ;; darwin* | rhapsody*) # PIC is the default on this platform # Common symbols not allowed in MH_DYLIB files _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fno-common' ;; haiku*) # PIC is the default for Haiku. # The "-static" flag exists, but is broken. _LT_TAGVAR(lt_prog_compiler_static, $1)= ;; hpux*) # PIC is the default for 64-bit PA HP-UX, but not for 32-bit # PA HP-UX. On IA64 HP-UX, PIC is the default but the pic flag # sets the default TLS model and affects inlining. case $host_cpu in hppa*64*) # +Z the default ;; *) _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' ;; esac ;; interix[[3-9]]*) # Interix 3.x gcc -fpic/-fPIC options generate broken code. # Instead, we relocate shared libraries at runtime. ;; msdosdjgpp*) # Just because we use GCC doesn't mean we suddenly get shared libraries # on systems that don't support them. _LT_TAGVAR(lt_prog_compiler_can_build_shared, $1)=no enable_shared=no ;; *nto* | *qnx*) # QNX uses GNU C++, but need to define -shared option too, otherwise # it will coredump. _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC -shared' ;; sysv4*MP*) if test -d /usr/nec; then _LT_TAGVAR(lt_prog_compiler_pic, $1)=-Kconform_pic fi ;; *) _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' ;; esac case $cc_basename in nvcc*) # Cuda Compiler Driver 2.2 _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Xlinker ' if test -n "$_LT_TAGVAR(lt_prog_compiler_pic, $1)"; then _LT_TAGVAR(lt_prog_compiler_pic, $1)="-Xcompiler $_LT_TAGVAR(lt_prog_compiler_pic, $1)" fi ;; esac else # PORTME Check for flag to pass linker flags through the system compiler. case $host_os in aix*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' if test "$host_cpu" = ia64; then # AIX 5 now supports IA64 processor _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' else _LT_TAGVAR(lt_prog_compiler_static, $1)='-bnso -bI:/lib/syscalls.exp' fi ;; mingw* | cygwin* | pw32* | os2* | cegcc*) # This hack is so that the source file can tell whether it is being # built for inclusion in a dll (and should export symbols for example). m4_if([$1], [GCJ], [], [_LT_TAGVAR(lt_prog_compiler_pic, $1)='-DDLL_EXPORT']) ;; hpux9* | hpux10* | hpux11*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' # PIC is the default for IA64 HP-UX and 64-bit HP-UX, but # not for PA HP-UX. case $host_cpu in hppa*64*|ia64*) # +Z the default ;; *) _LT_TAGVAR(lt_prog_compiler_pic, $1)='+Z' ;; esac # Is there a better lt_prog_compiler_static that works with the bundled CC? _LT_TAGVAR(lt_prog_compiler_static, $1)='${wl}-a ${wl}archive' ;; irix5* | irix6* | nonstopux*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' # PIC (with -KPIC) is the default. _LT_TAGVAR(lt_prog_compiler_static, $1)='-non_shared' ;; linux* | k*bsd*-gnu | kopensolaris*-gnu | gnu*) case $cc_basename in # old Intel for x86_64 which still supported -KPIC. ecc*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-static' ;; # icc used to be incompatible with GCC. # ICC 10 doesn't accept -KPIC any more. icc* | ifort*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-static' ;; # Lahey Fortran 8.1. lf95*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='--shared' _LT_TAGVAR(lt_prog_compiler_static, $1)='--static' ;; nagfor*) # NAG Fortran compiler _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,-Wl,,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-PIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; pgcc* | pgf77* | pgf90* | pgf95* | pgfortran*) # Portland Group compilers (*not* the Pentium gcc compiler, # which looks to be a dead project) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fpic' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; ccc*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' # All Alpha code is PIC. _LT_TAGVAR(lt_prog_compiler_static, $1)='-non_shared' ;; xl* | bgxl* | bgf* | mpixl*) # IBM XL C 8.0/Fortran 10.1, 11.1 on PPC and BlueGene _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-qpic' _LT_TAGVAR(lt_prog_compiler_static, $1)='-qstaticlink' ;; *) case `$CC -V 2>&1 | sed 5q` in *Sun\ Ceres\ Fortran* | *Sun*Fortran*\ [[1-7]].* | *Sun*Fortran*\ 8.[[0-3]]*) # Sun Fortran 8.3 passes all unrecognized flags to the linker _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' _LT_TAGVAR(lt_prog_compiler_wl, $1)='' ;; *Sun\ F* | *Sun*Fortran*) _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Qoption ld ' ;; *Sun\ C*) # Sun C 5.9 _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' ;; *Intel*\ [[CF]]*Compiler*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-static' ;; *Portland\ Group*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fpic' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; esac ;; esac ;; newsos6) _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; *nto* | *qnx*) # QNX uses GNU C++, but need to define -shared option too, otherwise # it will coredump. _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC -shared' ;; osf3* | osf4* | osf5*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' # All OSF/1 code is PIC. _LT_TAGVAR(lt_prog_compiler_static, $1)='-non_shared' ;; rdos*) _LT_TAGVAR(lt_prog_compiler_static, $1)='-non_shared' ;; solaris*) _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' case $cc_basename in f77* | f90* | f95* | sunf77* | sunf90* | sunf95*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Qoption ld ';; *) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,';; esac ;; sunos4*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Qoption ld ' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-PIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; sysv4 | sysv4.2uw2* | sysv4.3*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; sysv4*MP*) if test -d /usr/nec ;then _LT_TAGVAR(lt_prog_compiler_pic, $1)='-Kconform_pic' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' fi ;; sysv5* | unixware* | sco3.2v5* | sco5v6* | OpenUNIX*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; unicos*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_can_build_shared, $1)=no ;; uts4*) _LT_TAGVAR(lt_prog_compiler_pic, $1)='-pic' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; *) _LT_TAGVAR(lt_prog_compiler_can_build_shared, $1)=no ;; esac fi ]) case $host_os in # For platforms which do not support PIC, -DPIC is meaningless: *djgpp*) _LT_TAGVAR(lt_prog_compiler_pic, $1)= ;; *) _LT_TAGVAR(lt_prog_compiler_pic, $1)="$_LT_TAGVAR(lt_prog_compiler_pic, $1)@&t@m4_if([$1],[],[ -DPIC],[m4_if([$1],[CXX],[ -DPIC],[])])" ;; esac AC_CACHE_CHECK([for $compiler option to produce PIC], [_LT_TAGVAR(lt_cv_prog_compiler_pic, $1)], [_LT_TAGVAR(lt_cv_prog_compiler_pic, $1)=$_LT_TAGVAR(lt_prog_compiler_pic, $1)]) _LT_TAGVAR(lt_prog_compiler_pic, $1)=$_LT_TAGVAR(lt_cv_prog_compiler_pic, $1) # # Check to make sure the PIC flag actually works. # if test -n "$_LT_TAGVAR(lt_prog_compiler_pic, $1)"; then _LT_COMPILER_OPTION([if $compiler PIC flag $_LT_TAGVAR(lt_prog_compiler_pic, $1) works], [_LT_TAGVAR(lt_cv_prog_compiler_pic_works, $1)], [$_LT_TAGVAR(lt_prog_compiler_pic, $1)@&t@m4_if([$1],[],[ -DPIC],[m4_if([$1],[CXX],[ -DPIC],[])])], [], [case $_LT_TAGVAR(lt_prog_compiler_pic, $1) in "" | " "*) ;; *) _LT_TAGVAR(lt_prog_compiler_pic, $1)=" $_LT_TAGVAR(lt_prog_compiler_pic, $1)" ;; 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(KAI) C++ Compiler # KCC will only create a shared library if the output file # ends with ".so" (or ".sl" for HP-UX), so rename the library # to its proper name (with version) after linking. _LT_TAGVAR(archive_cmds, $1)='tempext=`echo $shared_ext | $SED -e '\''s/\([[^()0-9A-Za-z{}]]\)/\\\\\1/g'\''`; templib=`echo $lib | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib; mv \$templib $lib' _LT_TAGVAR(archive_expsym_cmds, $1)='tempext=`echo $shared_ext | $SED -e '\''s/\([[^()0-9A-Za-z{}]]\)/\\\\\1/g'\''`; templib=`echo $lib | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib ${wl}-retain-symbols-file,$export_symbols; mv \$templib $lib' # Commands to make compiler produce verbose output that lists # what "hidden" libraries, object files and flags are used when # linking a shared library. # # There doesn't appear to be a way to prevent this compiler from # explicitly linking system object files so we need to strip them # from the output so that they don't get included in the library # dependencies. output_verbose_link_cmd='templist=`$CC $CFLAGS -v conftest.$objext -o libconftest$shared_ext 2>&1 | $GREP "ld"`; rm -f libconftest$shared_ext; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; func_echo_all "$list"' _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath,$libdir' _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}--export-dynamic' # Archives containing C++ object files must be created using # "CC -Bstatic", where "CC" is the KAI C++ compiler. _LT_TAGVAR(old_archive_cmds, $1)='$CC -Bstatic -o $oldlib $oldobjs' ;; icpc* | ecpc* ) # Intel C++ with_gnu_ld=yes # version 8.0 and above of icpc choke on multiply defined symbols # if we add $predep_objects and $postdep_objects, however 7.1 and # earlier do not add the objects themselves. case `$CC -V 2>&1` in *"Version 7."*) _LT_TAGVAR(archive_cmds, $1)='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname -o $lib' _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib' ;; *) # Version 8.0 or newer tmp_idyn= case $host_cpu in ia64*) tmp_idyn=' -i_dynamic';; esac _LT_TAGVAR(archive_cmds, $1)='$CC -shared'"$tmp_idyn"' $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared'"$tmp_idyn"' $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib' ;; esac _LT_TAGVAR(archive_cmds_need_lc, $1)=no _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath,$libdir' _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}--export-dynamic' _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive$convenience ${wl}--no-whole-archive' ;; pgCC* | pgcpp*) # Portland Group C++ compiler case `$CC -V` in *pgCC\ [[1-5]].* | *pgcpp\ [[1-5]].*) _LT_TAGVAR(prelink_cmds, $1)='tpldir=Template.dir~ rm -rf $tpldir~ $CC --prelink_objects --instantiation_dir $tpldir $objs $libobjs $compile_deplibs~ compile_command="$compile_command `find $tpldir -name \*.o | sort | $NL2SP`"' _LT_TAGVAR(old_archive_cmds, $1)='tpldir=Template.dir~ rm -rf $tpldir~ $CC --prelink_objects --instantiation_dir $tpldir $oldobjs$old_deplibs~ $AR $AR_FLAGS $oldlib$oldobjs$old_deplibs `find $tpldir -name \*.o | sort | $NL2SP`~ $RANLIB $oldlib' _LT_TAGVAR(archive_cmds, $1)='tpldir=Template.dir~ rm -rf $tpldir~ $CC --prelink_objects --instantiation_dir $tpldir $predep_objects $libobjs $deplibs $convenience $postdep_objects~ $CC -shared $pic_flag $predep_objects $libobjs $deplibs `find $tpldir -name \*.o | sort | $NL2SP` $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname -o $lib' _LT_TAGVAR(archive_expsym_cmds, $1)='tpldir=Template.dir~ rm -rf $tpldir~ $CC --prelink_objects --instantiation_dir $tpldir $predep_objects $libobjs $deplibs $convenience $postdep_objects~ $CC -shared $pic_flag $predep_objects $libobjs $deplibs `find $tpldir -name \*.o | sort | $NL2SP` $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname ${wl}-retain-symbols-file ${wl}$export_symbols -o $lib' ;; *) # Version 6 and above use weak symbols _LT_TAGVAR(archive_cmds, $1)='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname -o $lib' _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname ${wl}-retain-symbols-file ${wl}$export_symbols -o $lib' ;; esac _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}--rpath ${wl}$libdir' _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}--export-dynamic' _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` ${wl}--no-whole-archive' ;; cxx*) # Compaq C++ _LT_TAGVAR(archive_cmds, $1)='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname -o $lib' _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname -o $lib ${wl}-retain-symbols-file $wl$export_symbols' runpath_var=LD_RUN_PATH _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-rpath $libdir' _LT_TAGVAR(hardcode_libdir_separator, $1)=: # Commands to make compiler produce verbose output that lists # what "hidden" libraries, object files and flags are used when # linking a shared library. # # There doesn't appear to be a way to prevent this compiler from # explicitly linking system object files so we need to strip them # from the output so that they don't get included in the library # dependencies. output_verbose_link_cmd='templist=`$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP "ld"`; templist=`func_echo_all "$templist" | $SED "s/\(^.*ld.*\)\( .*ld .*$\)/\1/"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; func_echo_all "X$list" | $Xsed' ;; xl* | mpixl* | bgxl*) # IBM XL 8.0 on PPC, with GNU ld _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir' _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}--export-dynamic' _LT_TAGVAR(archive_cmds, $1)='$CC -qmkshrobj $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' if test "x$supports_anon_versioning" = xyes; then _LT_TAGVAR(archive_expsym_cmds, $1)='echo "{ global:" > $output_objdir/$libname.ver~ cat $export_symbols | sed -e "s/\(.*\)/\1;/" >> $output_objdir/$libname.ver~ echo "local: *; };" >> $output_objdir/$libname.ver~ $CC -qmkshrobj $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-version-script ${wl}$output_objdir/$libname.ver -o $lib' fi ;; *) case `$CC -V 2>&1 | sed 5q` in *Sun\ C*) # Sun C++ 5.9 _LT_TAGVAR(no_undefined_flag, $1)=' -zdefs' _LT_TAGVAR(archive_cmds, $1)='$CC -G${allow_undefined_flag} -h$soname -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags' _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -G${allow_undefined_flag} -h$soname -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-retain-symbols-file ${wl}$export_symbols' _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-R$libdir' _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive`new_convenience=; for conv in $convenience\"\"; do test -z \"$conv\" || new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` ${wl}--no-whole-archive' _LT_TAGVAR(compiler_needs_object, $1)=yes # Not sure whether something based on # $CC $CFLAGS -v conftest.$objext -o libconftest$shared_ext 2>&1 # would be better. output_verbose_link_cmd='func_echo_all' # Archives containing C++ object files must be created using # "CC -xar", where "CC" is the Sun C++ compiler. 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*) _LT_TAGVAR(allow_undefined_flag, $1)=' -expect_unresolved \*' _LT_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -msym -soname $soname `test -n "$verstring" && func_echo_all "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib' _LT_TAGVAR(archive_expsym_cmds, $1)='for i in `cat $export_symbols`; do printf "%s %s\\n" -exported_symbol "\$i" >> $lib.exp; done~ echo "-hidden">> $lib.exp~ $CC -shared$allow_undefined_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -msym -soname $soname ${wl}-input ${wl}$lib.exp `test -n "$verstring" && $ECHO "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib~ $RM $lib.exp' _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-rpath $libdir' ;; esac _LT_TAGVAR(hardcode_libdir_separator, $1)=: # Commands to make compiler produce verbose output that lists # what "hidden" libraries, object files and flags are used when # linking a shared library. # # There doesn't appear to be a way to prevent this compiler from # explicitly linking system object files so we need to strip them # from the output so that they don't get included in the library # dependencies. output_verbose_link_cmd='templist=`$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP "ld" | $GREP -v "ld:"`; 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Vaughan, 2004 # # This file is free software; the Free Software Foundation gives # unlimited permission to copy and/or distribute it, with or without # modifications, as long as this notice is preserved. # serial 7 ltoptions.m4 # This is to help aclocal find these macros, as it can't see m4_define. AC_DEFUN([LTOPTIONS_VERSION], [m4_if([1])]) # _LT_MANGLE_OPTION(MACRO-NAME, OPTION-NAME) # ------------------------------------------ m4_define([_LT_MANGLE_OPTION], [[_LT_OPTION_]m4_bpatsubst($1__$2, [[^a-zA-Z0-9_]], [_])]) # _LT_SET_OPTION(MACRO-NAME, OPTION-NAME) # --------------------------------------- # Set option OPTION-NAME for macro MACRO-NAME, and if there is a # matching handler defined, dispatch to it. Other OPTION-NAMEs are # saved as a flag. m4_define([_LT_SET_OPTION], [m4_define(_LT_MANGLE_OPTION([$1], [$2]))dnl m4_ifdef(_LT_MANGLE_DEFUN([$1], [$2]), _LT_MANGLE_DEFUN([$1], [$2]), [m4_warning([Unknown $1 option `$2'])])[]dnl ]) # _LT_IF_OPTION(MACRO-NAME, OPTION-NAME, IF-SET, [IF-NOT-SET]) # ------------------------------------------------------------ # Execute IF-SET if OPTION is set, IF-NOT-SET otherwise. m4_define([_LT_IF_OPTION], [m4_ifdef(_LT_MANGLE_OPTION([$1], [$2]), [$3], [$4])]) # _LT_UNLESS_OPTIONS(MACRO-NAME, OPTION-LIST, IF-NOT-SET) # ------------------------------------------------------- # Execute IF-NOT-SET unless all options in OPTION-LIST for MACRO-NAME # are set. m4_define([_LT_UNLESS_OPTIONS], [m4_foreach([_LT_Option], m4_split(m4_normalize([$2])), [m4_ifdef(_LT_MANGLE_OPTION([$1], _LT_Option), [m4_define([$0_found])])])[]dnl m4_ifdef([$0_found], [m4_undefine([$0_found])], [$3 ])[]dnl ]) # _LT_SET_OPTIONS(MACRO-NAME, OPTION-LIST) # ---------------------------------------- # OPTION-LIST is a space-separated list of Libtool options associated # with MACRO-NAME. 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For example, if neither dnl `shared' nor `disable-shared' was passed, we enable building of shared dnl archives by default: _LT_UNLESS_OPTIONS([LT_INIT], [shared disable-shared], [_LT_ENABLE_SHARED]) _LT_UNLESS_OPTIONS([LT_INIT], [static disable-static], [_LT_ENABLE_STATIC]) _LT_UNLESS_OPTIONS([LT_INIT], [pic-only no-pic], [_LT_WITH_PIC]) _LT_UNLESS_OPTIONS([LT_INIT], [fast-install disable-fast-install], [_LT_ENABLE_FAST_INSTALL]) ]) ])# _LT_SET_OPTIONS ## --------------------------------- ## ## Macros to handle LT_INIT options. ## ## --------------------------------- ## # _LT_MANGLE_DEFUN(MACRO-NAME, OPTION-NAME) # ----------------------------------------- m4_define([_LT_MANGLE_DEFUN], [[_LT_OPTION_DEFUN_]m4_bpatsubst(m4_toupper([$1__$2]), [[^A-Z0-9_]], [_])]) # LT_OPTION_DEFINE(MACRO-NAME, OPTION-NAME, CODE) # ----------------------------------------------- m4_define([LT_OPTION_DEFINE], [m4_define(_LT_MANGLE_DEFUN([$1], [$2]), [$3])[]dnl ])# LT_OPTION_DEFINE # dlopen # ------ LT_OPTION_DEFINE([LT_INIT], [dlopen], [enable_dlopen=yes ]) AU_DEFUN([AC_LIBTOOL_DLOPEN], [_LT_SET_OPTION([LT_INIT], [dlopen]) AC_DIAGNOSE([obsolete], [$0: Remove this warning and the call to _LT_SET_OPTION when you put the `dlopen' option into LT_INIT's first parameter.]) ]) dnl aclocal-1.4 backwards compatibility: dnl AC_DEFUN([AC_LIBTOOL_DLOPEN], []) # win32-dll # --------- # Declare package support for building win32 dll's. 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See the # GNU General Public License for more details. # You should have received a copy of the GNU General Public License # along with this program. If not, see . # As a special exception to the GNU General Public License, if you # distribute this file as part of a program that contains a # configuration script generated by Autoconf, you may include it under # the same distribution terms that you use for the rest of that program. # Originally written by Alexandre Oliva . case $1 in '') echo "$0: No command. Try '$0 --help' for more information." 1>&2 exit 1; ;; -h | --h*) cat <<\EOF Usage: depcomp [--help] [--version] PROGRAM [ARGS] Run PROGRAMS ARGS to compile a file, generating dependencies as side-effects. Environment variables: depmode Dependency tracking mode. source Source file read by 'PROGRAMS ARGS'. object Object file output by 'PROGRAMS ARGS'. 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We # parameterize here, but still list the modes in the big case below, # to make depend.m4 easier to write. Note that we *cannot* use a case # here, because this file can only contain one case statement. if test "$depmode" = hp; then # HP compiler uses -M and no extra arg. gccflag=-M depmode=gcc fi if test "$depmode" = dashXmstdout; then # This is just like dashmstdout with a different argument. dashmflag=-xM depmode=dashmstdout fi cygpath_u="cygpath -u -f -" if test "$depmode" = msvcmsys; then # This is just like msvisualcpp but w/o cygpath translation. # Just convert the backslash-escaped backslashes to single forward # slashes to satisfy depend.m4 cygpath_u='sed s,\\\\,/,g' depmode=msvisualcpp fi if test "$depmode" = msvc7msys; then # This is just like msvc7 but w/o cygpath translation. # Just convert the backslash-escaped backslashes to single forward # slashes to satisfy depend.m4 cygpath_u='sed s,\\\\,/,g' depmode=msvc7 fi if test "$depmode" = xlc; then # IBM C/C++ Compilers xlc/xlC can output gcc-like dependency information. gccflag=-qmakedep=gcc,-MF depmode=gcc fi case "$depmode" in gcc3) ## gcc 3 implements dependency tracking that does exactly what ## we want. Yay! Note: for some reason libtool 1.4 doesn't like ## it if -MD -MP comes after the -MF stuff. Hmm. ## Unfortunately, FreeBSD c89 acceptance of flags depends upon ## the command line argument order; so add the flags where they ## appear in depend2.am. Note that the slowdown incurred here ## affects only configure: in makefiles, %FASTDEP% shortcuts this. for arg do case $arg in -c) set fnord "$@" -MT "$object" -MD -MP -MF "$tmpdepfile" "$arg" ;; *) set fnord "$@" "$arg" ;; esac shift # fnord shift # $arg done "$@" stat=$? if test $stat -ne 0; then rm -f "$tmpdepfile" exit $stat fi mv "$tmpdepfile" "$depfile" ;; gcc) ## Note that this doesn't just cater to obsosete pre-3.x GCC compilers. ## but also to in-use compilers like IMB xlc/xlC and the HP C compiler. ## (see the conditional assignment to $gccflag above). ## There are various ways to get dependency output from gcc. Here's ## why we pick this rather obscure method: ## - Don't want to use -MD because we'd like the dependencies to end ## up in a subdir. Having to rename by hand is ugly. ## (We might end up doing this anyway to support other compilers.) ## - The DEPENDENCIES_OUTPUT environment variable makes gcc act like ## -MM, not -M (despite what the docs say). Also, it might not be ## supported by the other compilers which use the 'gcc' depmode. ## - Using -M directly means running the compiler twice (even worse ## than renaming). if test -z "$gccflag"; then gccflag=-MD, fi "$@" -Wp,"$gccflag$tmpdepfile" stat=$? if test $stat -ne 0; then rm -f "$tmpdepfile" exit $stat fi rm -f "$depfile" echo "$object : \\" > "$depfile" # The second -e expression handles DOS-style file names with drive # letters. sed -e 's/^[^:]*: / /' \ -e 's/^['$alpha']:\/[^:]*: / /' < "$tmpdepfile" >> "$depfile" ## This next piece of magic avoids the "deleted header file" problem. ## The problem is that when a header file which appears in a .P file ## is deleted, the dependency causes make to die (because there is ## typically no way to rebuild the header). We avoid this by adding ## dummy dependencies for each header file. Too bad gcc doesn't do ## this for us directly. ## Some versions of gcc put a space before the ':'. On the theory ## that the space means something, we add a space to the output as ## well. hp depmode also adds that space, but also prefixes the VPATH ## to the object. Take care to not repeat it in the output. ## Some versions of the HPUX 10.20 sed can't process this invocation ## correctly. Breaking it into two sed invocations is a workaround. tr ' ' "$nl" < "$tmpdepfile" \ | sed -e 's/^\\$//' -e '/^$/d' -e "s|.*$object$||" -e '/:$/d' \ | sed -e 's/$/ :/' >> "$depfile" rm -f "$tmpdepfile" ;; hp) # This case exists only to let depend.m4 do its work. It works by # looking at the text of this script. This case will never be run, # since it is checked for above. exit 1 ;; sgi) if test "$libtool" = yes; then "$@" "-Wp,-MDupdate,$tmpdepfile" else "$@" -MDupdate "$tmpdepfile" fi stat=$? if test $stat -ne 0; then rm -f "$tmpdepfile" exit $stat fi rm -f "$depfile" if test -f "$tmpdepfile"; then # yes, the sourcefile depend on other files echo "$object : \\" > "$depfile" # Clip off the initial element (the dependent). Don't try to be # clever and replace this with sed code, as IRIX sed won't handle # lines with more than a fixed number of characters (4096 in # IRIX 6.2 sed, 8192 in IRIX 6.5). We also remove comment lines; # the IRIX cc adds comments like '#:fec' to the end of the # dependency line. tr ' ' "$nl" < "$tmpdepfile" \ | sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' \ | tr "$nl" ' ' >> "$depfile" echo >> "$depfile" # The second pass generates a dummy entry for each header file. tr ' ' "$nl" < "$tmpdepfile" \ | sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' -e 's/$/:/' \ >> "$depfile" else make_dummy_depfile fi rm -f "$tmpdepfile" ;; xlc) # This case exists only to let depend.m4 do its work. It works by # looking at the text of this script. This case will never be run, # since it is checked for above. exit 1 ;; aix) # The C for AIX Compiler uses -M and outputs the dependencies # in a .u file. In older versions, this file always lives in the # current directory. Also, the AIX compiler puts '$object:' at the # start of each line; $object doesn't have directory information. # Version 6 uses the directory in both cases. set_dir_from "$object" set_base_from "$object" if test "$libtool" = yes; then tmpdepfile1=$dir$base.u tmpdepfile2=$base.u tmpdepfile3=$dir.libs/$base.u "$@" -Wc,-M else tmpdepfile1=$dir$base.u tmpdepfile2=$dir$base.u tmpdepfile3=$dir$base.u "$@" -M fi stat=$? if test $stat -ne 0; then rm -f "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3" exit $stat fi for tmpdepfile in "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3" do test -f "$tmpdepfile" && break done aix_post_process_depfile ;; tcc) # tcc (Tiny C Compiler) understand '-MD -MF file' since version 0.9.26 # FIXME: That version still under development at the moment of writing. # Make that this statement remains true also for stable, released # versions. # It will wrap lines (doesn't matter whether long or short) with a # trailing '\', as in: # # foo.o : \ # foo.c \ # foo.h \ # # It will put a trailing '\' even on the last line, and will use leading # spaces rather than leading tabs (at least since its commit 0394caf7 # "Emit spaces for -MD"). "$@" -MD -MF "$tmpdepfile" stat=$? if test $stat -ne 0; then rm -f "$tmpdepfile" exit $stat fi rm -f "$depfile" # Each non-empty line is of the form 'foo.o : \' or ' dep.h \'. # We have to change lines of the first kind to '$object: \'. sed -e "s|.*:|$object :|" < "$tmpdepfile" > "$depfile" # And for each line of the second kind, we have to emit a 'dep.h:' # dummy dependency, to avoid the deleted-header problem. sed -n -e 's|^ *\(.*\) *\\$|\1:|p' < "$tmpdepfile" >> "$depfile" rm -f "$tmpdepfile" ;; ## The order of this option in the case statement is important, since the ## shell code in configure will try each of these formats in the order ## listed in this file. A plain '-MD' option would be understood by many ## compilers, so we must ensure this comes after the gcc and icc options. pgcc) # Portland's C compiler understands '-MD'. # Will always output deps to 'file.d' where file is the root name of the # source file under compilation, even if file resides in a subdirectory. # The object file name does not affect the name of the '.d' file. # pgcc 10.2 will output # foo.o: sub/foo.c sub/foo.h # and will wrap long lines using '\' : # foo.o: sub/foo.c ... \ # sub/foo.h ... \ # ... set_dir_from "$object" # Use the source, not the object, to determine the base name, since # that's sadly what pgcc will do too. set_base_from "$source" tmpdepfile=$base.d # For projects that build the same source file twice into different object # files, the pgcc approach of using the *source* file root name can cause # problems in parallel builds. Use a locking strategy to avoid stomping on # the same $tmpdepfile. lockdir=$base.d-lock trap " echo '$0: caught signal, cleaning up...' >&2 rmdir '$lockdir' exit 1 " 1 2 13 15 numtries=100 i=$numtries while test $i -gt 0; do # mkdir is a portable test-and-set. if mkdir "$lockdir" 2>/dev/null; then # This process acquired the lock. "$@" -MD stat=$? # Release the lock. rmdir "$lockdir" break else # If the lock is being held by a different process, wait # until the winning process is done or we timeout. while test -d "$lockdir" && test $i -gt 0; do sleep 1 i=`expr $i - 1` done fi i=`expr $i - 1` done trap - 1 2 13 15 if test $i -le 0; then echo "$0: failed to acquire lock after $numtries attempts" >&2 echo "$0: check lockdir '$lockdir'" >&2 exit 1 fi if test $stat -ne 0; then rm -f "$tmpdepfile" exit $stat fi rm -f "$depfile" # Each line is of the form `foo.o: dependent.h', # or `foo.o: dep1.h dep2.h \', or ` dep3.h dep4.h \'. # Do two passes, one to just change these to # `$object: dependent.h' and one to simply `dependent.h:'. sed "s,^[^:]*:,$object :," < "$tmpdepfile" > "$depfile" # Some versions of the HPUX 10.20 sed can't process this invocation # correctly. Breaking it into two sed invocations is a workaround. sed 's,^[^:]*: \(.*\)$,\1,;s/^\\$//;/^$/d;/:$/d' < "$tmpdepfile" \ | sed -e 's/$/ :/' >> "$depfile" rm -f "$tmpdepfile" ;; hp2) # The "hp" stanza above does not work with aCC (C++) and HP's ia64 # compilers, which have integrated preprocessors. 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This case will never be run, # since it is checked for above. exit 1 ;; none) exec "$@" ;; *) echo "Unknown depmode $depmode" 1>&2 exit 1 ;; esac exit 0 # Local Variables: # mode: shell-script # sh-indentation: 2 # eval: (add-hook 'write-file-hooks 'time-stamp) # time-stamp-start: "scriptversion=" # time-stamp-format: "%:y-%02m-%02d.%02H" # time-stamp-time-zone: "UTC" # time-stamp-end: "; # UTC" # End: healpy-1.8.1/healpixsubmodule/src/cxx/autotools/make_release0000650000175000017530000000050412255154051024742 0ustar zoncaplanck00000000000000#!/bin/sh NAME=HealpixCxx-3.12_experimental URL=http://svn.code.sf.net/p/healpix/code/trunk/src/cxx REV=HEAD svn export -r ${REV} ${URL} ${NAME} &&\ cd ${NAME}/autotools &&\ autoreconf --install &&\ ./configure &&\ make -j2 distcheck &&\ cd - &&\ mv ${NAME}/autotools/*tar.gz . &&\ chmod -R a+w ${NAME} &&\ rm -rf ${NAME} healpy-1.8.1/healpixsubmodule/src/cxx/autotools/config.guess0000755000175000017500000012355012346122572024577 0ustar zoncazonca00000000000000#! /bin/sh # Attempt to guess a canonical system name. # Copyright 1992-2014 Free Software Foundation, Inc. timestamp='2014-03-23' # This file is free software; you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. 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Operation modes: -h, --help print this help, then exit -t, --time-stamp print date of last modification, then exit -v, --version print version number, then exit Report bugs and patches to ." version="\ GNU config.guess ($timestamp) Originally written by Per Bothner. Copyright 1992-2014 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE." help=" Try \`$me --help' for more information." # Parse command line while test $# -gt 0 ; do case $1 in --time-stamp | --time* | -t ) echo "$timestamp" ; exit ;; --version | -v ) echo "$version" ; exit ;; --help | --h* | -h ) echo "$usage"; exit ;; -- ) # Stop option processing shift; break ;; - ) # Use stdin as input. break ;; -* ) echo "$me: invalid option $1$help" >&2 exit 1 ;; * ) break ;; esac done if test $# != 0; then echo "$me: too many arguments$help" >&2 exit 1 fi trap 'exit 1' 1 2 15 # CC_FOR_BUILD -- compiler used by this script. Note that the use of a # compiler to aid in system detection is discouraged as it requires # temporary files to be created and, as you can see below, it is a # headache to deal with in a portable fashion. # Historically, `CC_FOR_BUILD' used to be named `HOST_CC'. We still # use `HOST_CC' if defined, but it is deprecated. # Portable tmp directory creation inspired by the Autoconf team. set_cc_for_build=' trap "exitcode=\$?; (rm -f \$tmpfiles 2>/dev/null; rmdir \$tmp 2>/dev/null) && exit \$exitcode" 0 ; trap "rm -f \$tmpfiles 2>/dev/null; rmdir \$tmp 2>/dev/null; exit 1" 1 2 13 15 ; : ${TMPDIR=/tmp} ; { tmp=`(umask 077 && mktemp -d "$TMPDIR/cgXXXXXX") 2>/dev/null` && test -n "$tmp" && test -d "$tmp" ; } || { test -n "$RANDOM" && tmp=$TMPDIR/cg$$-$RANDOM && (umask 077 && mkdir $tmp) ; } || { tmp=$TMPDIR/cg-$$ && (umask 077 && mkdir $tmp) && echo "Warning: creating insecure temp directory" >&2 ; } || { echo "$me: cannot create a temporary directory in $TMPDIR" >&2 ; exit 1 ; } ; dummy=$tmp/dummy ; tmpfiles="$dummy.c $dummy.o $dummy.rel $dummy" ; case $CC_FOR_BUILD,$HOST_CC,$CC in ,,) echo "int x;" > $dummy.c ; for c in cc gcc c89 c99 ; do if ($c -c -o $dummy.o $dummy.c) >/dev/null 2>&1 ; then CC_FOR_BUILD="$c"; break ; fi ; done ; if test x"$CC_FOR_BUILD" = x ; then CC_FOR_BUILD=no_compiler_found ; fi ;; ,,*) CC_FOR_BUILD=$CC ;; ,*,*) CC_FOR_BUILD=$HOST_CC ;; esac ; set_cc_for_build= ;' # This is needed to find uname on a Pyramid OSx when run in the BSD universe. # (ghazi@noc.rutgers.edu 1994-08-24) if (test -f /.attbin/uname) >/dev/null 2>&1 ; then PATH=$PATH:/.attbin ; export PATH fi UNAME_MACHINE=`(uname -m) 2>/dev/null` || UNAME_MACHINE=unknown UNAME_RELEASE=`(uname -r) 2>/dev/null` || UNAME_RELEASE=unknown UNAME_SYSTEM=`(uname -s) 2>/dev/null` || UNAME_SYSTEM=unknown UNAME_VERSION=`(uname -v) 2>/dev/null` || UNAME_VERSION=unknown case "${UNAME_SYSTEM}" in Linux|GNU|GNU/*) # If the system lacks a compiler, then just pick glibc. # We could probably try harder. LIBC=gnu eval $set_cc_for_build cat <<-EOF > $dummy.c #include #if defined(__UCLIBC__) LIBC=uclibc #elif defined(__dietlibc__) LIBC=dietlibc #else LIBC=gnu #endif EOF eval `$CC_FOR_BUILD -E $dummy.c 2>/dev/null | grep '^LIBC' | sed 's, ,,g'` ;; esac # Note: order is significant - the case branches are not exclusive. case "${UNAME_MACHINE}:${UNAME_SYSTEM}:${UNAME_RELEASE}:${UNAME_VERSION}" in *:NetBSD:*:*) # NetBSD (nbsd) targets should (where applicable) match one or # more of the tuples: *-*-netbsdelf*, *-*-netbsdaout*, # *-*-netbsdecoff* and *-*-netbsd*. For targets that recently # switched to ELF, *-*-netbsd* would select the old # object file format. This provides both forward # compatibility and a consistent mechanism for selecting the # object file format. # # Note: NetBSD doesn't particularly care about the vendor # portion of the name. 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Ake) contributed MIS and NILE. if test "`(/bin/universe) 2>/dev/null`" = att ; then echo pyramid-pyramid-sysv3 else echo pyramid-pyramid-bsd fi exit ;; NILE*:*:*:dcosx) echo pyramid-pyramid-svr4 exit ;; DRS?6000:unix:4.0:6*) echo sparc-icl-nx6 exit ;; DRS?6000:UNIX_SV:4.2*:7* | DRS?6000:isis:4.2*:7*) case `/usr/bin/uname -p` in sparc) echo sparc-icl-nx7; exit ;; esac ;; s390x:SunOS:*:*) echo ${UNAME_MACHINE}-ibm-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'` exit ;; sun4H:SunOS:5.*:*) echo sparc-hal-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'` exit ;; sun4*:SunOS:5.*:* | tadpole*:SunOS:5.*:*) echo sparc-sun-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'` exit ;; i86pc:AuroraUX:5.*:* | i86xen:AuroraUX:5.*:*) echo i386-pc-auroraux${UNAME_RELEASE} exit ;; i86pc:SunOS:5.*:* | i86xen:SunOS:5.*:*) eval $set_cc_for_build SUN_ARCH="i386" # If there is a compiler, see if it is configured for 64-bit objects. # Note that the Sun cc does not turn __LP64__ into 1 like gcc does. # This test works for both compilers. if [ "$CC_FOR_BUILD" != 'no_compiler_found' ]; then if (echo '#ifdef __amd64'; echo IS_64BIT_ARCH; echo '#endif') | \ (CCOPTS= $CC_FOR_BUILD -E - 2>/dev/null) | \ grep IS_64BIT_ARCH >/dev/null then SUN_ARCH="x86_64" fi fi echo ${SUN_ARCH}-pc-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'` exit ;; sun4*:SunOS:6*:*) # According to config.sub, this is the proper way to canonicalize # SunOS6. 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The system name ranges from "MiNT" over "FreeMiNT" # to the lowercase version "mint" (or "freemint"). Finally # the system name "TOS" denotes a system which is actually not # MiNT. But MiNT is downward compatible to TOS, so this should # be no problem. atarist[e]:*MiNT:*:* | atarist[e]:*mint:*:* | atarist[e]:*TOS:*:*) echo m68k-atari-mint${UNAME_RELEASE} exit ;; atari*:*MiNT:*:* | atari*:*mint:*:* | atarist[e]:*TOS:*:*) echo m68k-atari-mint${UNAME_RELEASE} exit ;; *falcon*:*MiNT:*:* | *falcon*:*mint:*:* | *falcon*:*TOS:*:*) echo m68k-atari-mint${UNAME_RELEASE} exit ;; milan*:*MiNT:*:* | milan*:*mint:*:* | *milan*:*TOS:*:*) echo m68k-milan-mint${UNAME_RELEASE} exit ;; hades*:*MiNT:*:* | hades*:*mint:*:* | *hades*:*TOS:*:*) echo m68k-hades-mint${UNAME_RELEASE} exit ;; *:*MiNT:*:* | *:*mint:*:* | *:*TOS:*:*) echo m68k-unknown-mint${UNAME_RELEASE} exit ;; m68k:machten:*:*) echo m68k-apple-machten${UNAME_RELEASE} exit ;; powerpc:machten:*:*) echo powerpc-apple-machten${UNAME_RELEASE} exit ;; RISC*:Mach:*:*) echo mips-dec-mach_bsd4.3 exit ;; RISC*:ULTRIX:*:*) echo mips-dec-ultrix${UNAME_RELEASE} exit ;; VAX*:ULTRIX*:*:*) echo vax-dec-ultrix${UNAME_RELEASE} exit ;; 2020:CLIX:*:* | 2430:CLIX:*:*) echo clipper-intergraph-clix${UNAME_RELEASE} exit ;; mips:*:*:UMIPS | mips:*:*:RISCos) eval $set_cc_for_build sed 's/^ //' << EOF >$dummy.c #ifdef __cplusplus #include /* for printf() prototype */ int main (int argc, char *argv[]) { #else int main (argc, argv) int argc; char *argv[]; { #endif #if defined (host_mips) && defined (MIPSEB) #if defined (SYSTYPE_SYSV) printf ("mips-mips-riscos%ssysv\n", argv[1]); exit (0); #endif #if defined (SYSTYPE_SVR4) printf ("mips-mips-riscos%ssvr4\n", argv[1]); exit (0); #endif #if defined (SYSTYPE_BSD43) || defined(SYSTYPE_BSD) printf ("mips-mips-riscos%sbsd\n", argv[1]); exit (0); #endif #endif exit (-1); } EOF $CC_FOR_BUILD -o $dummy $dummy.c && dummyarg=`echo "${UNAME_RELEASE}" | sed -n 's/\([0-9]*\).*/\1/p'` && SYSTEM_NAME=`$dummy $dummyarg` && { echo "$SYSTEM_NAME"; exit; } echo mips-mips-riscos${UNAME_RELEASE} exit ;; Motorola:PowerMAX_OS:*:*) echo powerpc-motorola-powermax exit ;; Motorola:*:4.3:PL8-*) echo powerpc-harris-powermax exit ;; Night_Hawk:*:*:PowerMAX_OS | Synergy:PowerMAX_OS:*:*) echo powerpc-harris-powermax exit ;; Night_Hawk:Power_UNIX:*:*) echo powerpc-harris-powerunix exit ;; m88k:CX/UX:7*:*) echo m88k-harris-cxux7 exit ;; m88k:*:4*:R4*) echo m88k-motorola-sysv4 exit ;; m88k:*:3*:R3*) echo m88k-motorola-sysv3 exit ;; AViiON:dgux:*:*) # DG/UX returns AViiON for all architectures UNAME_PROCESSOR=`/usr/bin/uname -p` if [ $UNAME_PROCESSOR = mc88100 ] || [ $UNAME_PROCESSOR = mc88110 ] then if [ ${TARGET_BINARY_INTERFACE}x = m88kdguxelfx ] || \ [ ${TARGET_BINARY_INTERFACE}x = x ] then echo m88k-dg-dgux${UNAME_RELEASE} else echo m88k-dg-dguxbcs${UNAME_RELEASE} fi else echo i586-dg-dgux${UNAME_RELEASE} fi exit ;; M88*:DolphinOS:*:*) # DolphinOS (SVR3) echo m88k-dolphin-sysv3 exit ;; M88*:*:R3*:*) # Delta 88k system running SVR3 echo m88k-motorola-sysv3 exit ;; XD88*:*:*:*) # Tektronix XD88 system running UTekV (SVR3) echo m88k-tektronix-sysv3 exit ;; Tek43[0-9][0-9]:UTek:*:*) # Tektronix 4300 system running UTek (BSD) echo m68k-tektronix-bsd exit ;; *:IRIX*:*:*) echo mips-sgi-irix`echo ${UNAME_RELEASE}|sed -e 's/-/_/g'` exit ;; ????????:AIX?:[12].1:2) # AIX 2.2.1 or AIX 2.1.1 is RT/PC AIX. echo romp-ibm-aix # uname -m gives an 8 hex-code CPU id exit ;; # Note that: echo "'`uname -s`'" gives 'AIX ' i*86:AIX:*:*) echo i386-ibm-aix exit ;; ia64:AIX:*:*) if [ -x /usr/bin/oslevel ] ; then IBM_REV=`/usr/bin/oslevel` else IBM_REV=${UNAME_VERSION}.${UNAME_RELEASE} fi echo ${UNAME_MACHINE}-ibm-aix${IBM_REV} exit ;; *:AIX:2:3) if grep bos325 /usr/include/stdio.h >/dev/null 2>&1; then eval $set_cc_for_build sed 's/^ //' << EOF >$dummy.c #include main() { if (!__power_pc()) exit(1); puts("powerpc-ibm-aix3.2.5"); exit(0); } EOF if $CC_FOR_BUILD -o $dummy $dummy.c && SYSTEM_NAME=`$dummy` then echo "$SYSTEM_NAME" else echo rs6000-ibm-aix3.2.5 fi elif grep bos324 /usr/include/stdio.h >/dev/null 2>&1; then echo rs6000-ibm-aix3.2.4 else echo rs6000-ibm-aix3.2 fi exit ;; *:AIX:*:[4567]) IBM_CPU_ID=`/usr/sbin/lsdev -C -c processor -S available | sed 1q | awk '{ print $1 }'` if /usr/sbin/lsattr -El ${IBM_CPU_ID} | grep ' POWER' >/dev/null 2>&1; then IBM_ARCH=rs6000 else IBM_ARCH=powerpc fi if [ -x /usr/bin/oslevel ] ; then IBM_REV=`/usr/bin/oslevel` else IBM_REV=${UNAME_VERSION}.${UNAME_RELEASE} fi echo ${IBM_ARCH}-ibm-aix${IBM_REV} exit ;; *:AIX:*:*) echo rs6000-ibm-aix exit ;; ibmrt:4.4BSD:*|romp-ibm:BSD:*) echo romp-ibm-bsd4.4 exit ;; ibmrt:*BSD:*|romp-ibm:BSD:*) # covers RT/PC BSD and echo romp-ibm-bsd${UNAME_RELEASE} # 4.3 with uname added to exit ;; # report: romp-ibm BSD 4.3 *:BOSX:*:*) echo rs6000-bull-bosx exit ;; DPX/2?00:B.O.S.:*:*) echo m68k-bull-sysv3 exit ;; 9000/[34]??:4.3bsd:1.*:*) echo m68k-hp-bsd exit ;; hp300:4.4BSD:*:* | 9000/[34]??:4.3bsd:2.*:*) echo m68k-hp-bsd4.4 exit ;; 9000/[34678]??:HP-UX:*:*) HPUX_REV=`echo ${UNAME_RELEASE}|sed -e 's/[^.]*.[0B]*//'` case "${UNAME_MACHINE}" in 9000/31? ) HP_ARCH=m68000 ;; 9000/[34]?? ) HP_ARCH=m68k ;; 9000/[678][0-9][0-9]) if [ -x /usr/bin/getconf ]; then sc_cpu_version=`/usr/bin/getconf SC_CPU_VERSION 2>/dev/null` sc_kernel_bits=`/usr/bin/getconf SC_KERNEL_BITS 2>/dev/null` case "${sc_cpu_version}" in 523) HP_ARCH="hppa1.0" ;; # CPU_PA_RISC1_0 528) HP_ARCH="hppa1.1" ;; # CPU_PA_RISC1_1 532) # CPU_PA_RISC2_0 case "${sc_kernel_bits}" in 32) HP_ARCH="hppa2.0n" ;; 64) HP_ARCH="hppa2.0w" ;; '') HP_ARCH="hppa2.0" ;; # HP-UX 10.20 esac ;; esac fi if [ "${HP_ARCH}" = "" ]; then eval $set_cc_for_build sed 's/^ //' << EOF >$dummy.c #define _HPUX_SOURCE #include #include int main () { #if defined(_SC_KERNEL_BITS) long bits = sysconf(_SC_KERNEL_BITS); #endif long cpu = sysconf (_SC_CPU_VERSION); switch (cpu) { case CPU_PA_RISC1_0: puts ("hppa1.0"); break; case CPU_PA_RISC1_1: puts ("hppa1.1"); break; case CPU_PA_RISC2_0: #if defined(_SC_KERNEL_BITS) switch (bits) { case 64: puts ("hppa2.0w"); break; case 32: puts ("hppa2.0n"); break; default: puts ("hppa2.0"); break; } break; #else /* !defined(_SC_KERNEL_BITS) */ puts ("hppa2.0"); break; #endif default: puts ("hppa1.0"); break; } exit (0); } EOF (CCOPTS= $CC_FOR_BUILD -o $dummy $dummy.c 2>/dev/null) && HP_ARCH=`$dummy` test -z "$HP_ARCH" && HP_ARCH=hppa fi ;; esac if [ ${HP_ARCH} = "hppa2.0w" ] then eval $set_cc_for_build # hppa2.0w-hp-hpux* has a 64-bit kernel and a compiler generating # 32-bit code. hppa64-hp-hpux* has the same kernel and a compiler # generating 64-bit code. GNU and HP use different nomenclature: # # $ CC_FOR_BUILD=cc ./config.guess # => hppa2.0w-hp-hpux11.23 # $ CC_FOR_BUILD="cc +DA2.0w" ./config.guess # => hppa64-hp-hpux11.23 if echo __LP64__ | (CCOPTS= $CC_FOR_BUILD -E - 2>/dev/null) | grep -q __LP64__ then HP_ARCH="hppa2.0w" else HP_ARCH="hppa64" fi fi echo ${HP_ARCH}-hp-hpux${HPUX_REV} exit ;; ia64:HP-UX:*:*) HPUX_REV=`echo ${UNAME_RELEASE}|sed -e 's/[^.]*.[0B]*//'` echo ia64-hp-hpux${HPUX_REV} exit ;; 3050*:HI-UX:*:*) eval $set_cc_for_build sed 's/^ //' << EOF >$dummy.c #include int main () { long cpu = sysconf (_SC_CPU_VERSION); /* The order matters, because CPU_IS_HP_MC68K erroneously returns true for CPU_PA_RISC1_0. CPU_IS_PA_RISC returns correct results, however. */ if (CPU_IS_PA_RISC (cpu)) { switch (cpu) { case CPU_PA_RISC1_0: puts ("hppa1.0-hitachi-hiuxwe2"); break; case CPU_PA_RISC1_1: puts ("hppa1.1-hitachi-hiuxwe2"); break; case CPU_PA_RISC2_0: puts ("hppa2.0-hitachi-hiuxwe2"); break; default: puts ("hppa-hitachi-hiuxwe2"); break; } } else if (CPU_IS_HP_MC68K (cpu)) puts ("m68k-hitachi-hiuxwe2"); else puts ("unknown-hitachi-hiuxwe2"); exit (0); } EOF $CC_FOR_BUILD -o $dummy $dummy.c && SYSTEM_NAME=`$dummy` && { echo "$SYSTEM_NAME"; exit; } echo unknown-hitachi-hiuxwe2 exit ;; 9000/7??:4.3bsd:*:* | 9000/8?[79]:4.3bsd:*:* ) echo hppa1.1-hp-bsd exit ;; 9000/8??:4.3bsd:*:*) echo hppa1.0-hp-bsd exit ;; *9??*:MPE/iX:*:* | *3000*:MPE/iX:*:*) echo hppa1.0-hp-mpeix exit ;; hp7??:OSF1:*:* | hp8?[79]:OSF1:*:* ) echo hppa1.1-hp-osf exit ;; hp8??:OSF1:*:*) echo hppa1.0-hp-osf exit ;; i*86:OSF1:*:*) if [ -x /usr/sbin/sysversion ] ; then echo ${UNAME_MACHINE}-unknown-osf1mk else echo ${UNAME_MACHINE}-unknown-osf1 fi exit ;; parisc*:Lites*:*:*) echo hppa1.1-hp-lites exit ;; C1*:ConvexOS:*:* | convex:ConvexOS:C1*:*) echo c1-convex-bsd exit ;; C2*:ConvexOS:*:* | convex:ConvexOS:C2*:*) if getsysinfo -f scalar_acc then echo c32-convex-bsd else echo c2-convex-bsd fi exit ;; C34*:ConvexOS:*:* | convex:ConvexOS:C34*:*) echo c34-convex-bsd exit ;; C38*:ConvexOS:*:* | convex:ConvexOS:C38*:*) echo c38-convex-bsd exit ;; C4*:ConvexOS:*:* | convex:ConvexOS:C4*:*) echo c4-convex-bsd exit ;; CRAY*Y-MP:*:*:*) echo ymp-cray-unicos${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/' exit ;; CRAY*[A-Z]90:*:*:*) echo ${UNAME_MACHINE}-cray-unicos${UNAME_RELEASE} \ | sed -e 's/CRAY.*\([A-Z]90\)/\1/' \ -e y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/ \ -e 's/\.[^.]*$/.X/' exit ;; CRAY*TS:*:*:*) echo t90-cray-unicos${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/' exit ;; CRAY*T3E:*:*:*) echo alphaev5-cray-unicosmk${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/' exit ;; CRAY*SV1:*:*:*) echo sv1-cray-unicos${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/' exit ;; *:UNICOS/mp:*:*) echo craynv-cray-unicosmp${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/' exit ;; F30[01]:UNIX_System_V:*:* | F700:UNIX_System_V:*:*) FUJITSU_PROC=`uname -m | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz'` FUJITSU_SYS=`uname -p | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/\///'` FUJITSU_REL=`echo ${UNAME_RELEASE} | sed -e 's/ /_/'` echo "${FUJITSU_PROC}-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}" exit ;; 5000:UNIX_System_V:4.*:*) FUJITSU_SYS=`uname -p | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/\///'` FUJITSU_REL=`echo ${UNAME_RELEASE} | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/ /_/'` echo "sparc-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}" exit ;; i*86:BSD/386:*:* | i*86:BSD/OS:*:* | *:Ascend\ Embedded/OS:*:*) echo ${UNAME_MACHINE}-pc-bsdi${UNAME_RELEASE} exit ;; sparc*:BSD/OS:*:*) echo sparc-unknown-bsdi${UNAME_RELEASE} exit ;; *:BSD/OS:*:*) echo ${UNAME_MACHINE}-unknown-bsdi${UNAME_RELEASE} exit ;; *:FreeBSD:*:*) UNAME_PROCESSOR=`/usr/bin/uname -p` case ${UNAME_PROCESSOR} in amd64) echo x86_64-unknown-freebsd`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'` ;; *) echo ${UNAME_PROCESSOR}-unknown-freebsd`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'` ;; esac exit ;; i*:CYGWIN*:*) echo ${UNAME_MACHINE}-pc-cygwin exit ;; *:MINGW64*:*) echo ${UNAME_MACHINE}-pc-mingw64 exit ;; *:MINGW*:*) echo ${UNAME_MACHINE}-pc-mingw32 exit ;; *:MSYS*:*) echo ${UNAME_MACHINE}-pc-msys exit ;; i*:windows32*:*) # uname -m includes "-pc" on this system. echo ${UNAME_MACHINE}-mingw32 exit ;; i*:PW*:*) echo ${UNAME_MACHINE}-pc-pw32 exit ;; *:Interix*:*) case ${UNAME_MACHINE} in x86) echo i586-pc-interix${UNAME_RELEASE} exit ;; authenticamd | genuineintel | EM64T) echo x86_64-unknown-interix${UNAME_RELEASE} exit ;; IA64) echo ia64-unknown-interix${UNAME_RELEASE} exit ;; esac ;; [345]86:Windows_95:* | [345]86:Windows_98:* | [345]86:Windows_NT:*) echo i${UNAME_MACHINE}-pc-mks exit ;; 8664:Windows_NT:*) echo x86_64-pc-mks exit ;; i*:Windows_NT*:* | Pentium*:Windows_NT*:*) # How do we know it's Interix rather than the generic POSIX subsystem? # It also conflicts with pre-2.0 versions of AT&T UWIN. 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EV56) UNAME_MACHINE=alphaev56 ;; PCA56) UNAME_MACHINE=alphapca56 ;; PCA57) UNAME_MACHINE=alphapca56 ;; EV6) UNAME_MACHINE=alphaev6 ;; EV67) UNAME_MACHINE=alphaev67 ;; EV68*) UNAME_MACHINE=alphaev68 ;; esac objdump --private-headers /bin/sh | grep -q ld.so.1 if test "$?" = 0 ; then LIBC="gnulibc1" ; fi echo ${UNAME_MACHINE}-unknown-linux-${LIBC} exit ;; arc:Linux:*:* | arceb:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-${LIBC} exit ;; arm*:Linux:*:*) eval $set_cc_for_build if echo __ARM_EABI__ | $CC_FOR_BUILD -E - 2>/dev/null \ | grep -q __ARM_EABI__ then echo ${UNAME_MACHINE}-unknown-linux-${LIBC} else if echo __ARM_PCS_VFP | $CC_FOR_BUILD -E - 2>/dev/null \ | grep -q __ARM_PCS_VFP then echo ${UNAME_MACHINE}-unknown-linux-${LIBC}eabi else echo ${UNAME_MACHINE}-unknown-linux-${LIBC}eabihf fi fi exit ;; avr32*:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-${LIBC} exit ;; cris:Linux:*:*) echo ${UNAME_MACHINE}-axis-linux-${LIBC} exit ;; crisv32:Linux:*:*) echo ${UNAME_MACHINE}-axis-linux-${LIBC} exit ;; frv:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-${LIBC} exit ;; hexagon:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-${LIBC} exit ;; i*86:Linux:*:*) echo ${UNAME_MACHINE}-pc-linux-${LIBC} exit ;; ia64:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-${LIBC} exit ;; m32r*:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-${LIBC} exit ;; m68*:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-${LIBC} exit ;; mips:Linux:*:* | mips64:Linux:*:*) eval $set_cc_for_build sed 's/^ //' << EOF >$dummy.c #undef CPU #undef ${UNAME_MACHINE} #undef ${UNAME_MACHINE}el #if defined(__MIPSEL__) || defined(__MIPSEL) || defined(_MIPSEL) || defined(MIPSEL) CPU=${UNAME_MACHINE}el #else #if defined(__MIPSEB__) || defined(__MIPSEB) || defined(_MIPSEB) || defined(MIPSEB) CPU=${UNAME_MACHINE} #else CPU= #endif #endif EOF eval `$CC_FOR_BUILD -E $dummy.c 2>/dev/null | grep '^CPU'` test x"${CPU}" != x && { echo "${CPU}-unknown-linux-${LIBC}"; exit; } ;; openrisc*:Linux:*:*) echo or1k-unknown-linux-${LIBC} exit ;; or32:Linux:*:* | or1k*:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-${LIBC} exit ;; padre:Linux:*:*) echo sparc-unknown-linux-${LIBC} exit ;; parisc64:Linux:*:* | hppa64:Linux:*:*) echo hppa64-unknown-linux-${LIBC} exit ;; parisc:Linux:*:* | hppa:Linux:*:*) # Look for CPU level case `grep '^cpu[^a-z]*:' /proc/cpuinfo 2>/dev/null | cut -d' ' -f2` in PA7*) echo hppa1.1-unknown-linux-${LIBC} ;; PA8*) echo hppa2.0-unknown-linux-${LIBC} ;; *) echo hppa-unknown-linux-${LIBC} ;; esac exit ;; ppc64:Linux:*:*) echo powerpc64-unknown-linux-${LIBC} exit ;; ppc:Linux:*:*) echo powerpc-unknown-linux-${LIBC} exit ;; ppc64le:Linux:*:*) echo powerpc64le-unknown-linux-${LIBC} exit ;; ppcle:Linux:*:*) echo powerpcle-unknown-linux-${LIBC} exit ;; s390:Linux:*:* | s390x:Linux:*:*) echo ${UNAME_MACHINE}-ibm-linux-${LIBC} exit ;; sh64*:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-${LIBC} exit ;; sh*:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-${LIBC} exit ;; sparc:Linux:*:* | sparc64:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-${LIBC} exit ;; tile*:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-${LIBC} exit ;; vax:Linux:*:*) echo ${UNAME_MACHINE}-dec-linux-${LIBC} exit ;; x86_64:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-${LIBC} exit ;; xtensa*:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-${LIBC} exit ;; i*86:DYNIX/ptx:4*:*) # ptx 4.0 does uname -s correctly, with DYNIX/ptx in there. # earlier versions are messed up and put the nodename in both # sysname and nodename. echo i386-sequent-sysv4 exit ;; i*86:UNIX_SV:4.2MP:2.*) # Unixware is an offshoot of SVR4, but it has its own version # number series starting with 2... # I am not positive that other SVR4 systems won't match this, # I just have to hope. -- rms. # Use sysv4.2uw... so that sysv4* matches it. echo ${UNAME_MACHINE}-pc-sysv4.2uw${UNAME_VERSION} exit ;; i*86:OS/2:*:*) # If we were able to find `uname', then EMX Unix compatibility # is probably installed. echo ${UNAME_MACHINE}-pc-os2-emx exit ;; i*86:XTS-300:*:STOP) echo ${UNAME_MACHINE}-unknown-stop exit ;; i*86:atheos:*:*) echo ${UNAME_MACHINE}-unknown-atheos exit ;; i*86:syllable:*:*) echo ${UNAME_MACHINE}-pc-syllable exit ;; i*86:LynxOS:2.*:* | i*86:LynxOS:3.[01]*:* | i*86:LynxOS:4.[02]*:*) echo i386-unknown-lynxos${UNAME_RELEASE} exit ;; i*86:*DOS:*:*) echo ${UNAME_MACHINE}-pc-msdosdjgpp exit ;; i*86:*:4.*:* | i*86:SYSTEM_V:4.*:*) UNAME_REL=`echo ${UNAME_RELEASE} | sed 's/\/MP$//'` if grep Novell /usr/include/link.h >/dev/null 2>/dev/null; then echo ${UNAME_MACHINE}-univel-sysv${UNAME_REL} else echo ${UNAME_MACHINE}-pc-sysv${UNAME_REL} fi exit ;; i*86:*:5:[678]*) # UnixWare 7.x, OpenUNIX and OpenServer 6. case `/bin/uname -X | grep "^Machine"` in *486*) UNAME_MACHINE=i486 ;; *Pentium) UNAME_MACHINE=i586 ;; *Pent*|*Celeron) UNAME_MACHINE=i686 ;; esac echo ${UNAME_MACHINE}-unknown-sysv${UNAME_RELEASE}${UNAME_SYSTEM}${UNAME_VERSION} exit ;; i*86:*:3.2:*) if test -f /usr/options/cb.name; then UNAME_REL=`sed -n 's/.*Version //p' /dev/null >/dev/null ; then UNAME_REL=`(/bin/uname -X|grep Release|sed -e 's/.*= //')` (/bin/uname -X|grep i80486 >/dev/null) && UNAME_MACHINE=i486 (/bin/uname -X|grep '^Machine.*Pentium' >/dev/null) \ && UNAME_MACHINE=i586 (/bin/uname -X|grep '^Machine.*Pent *II' >/dev/null) \ && UNAME_MACHINE=i686 (/bin/uname -X|grep '^Machine.*Pentium Pro' >/dev/null) \ && UNAME_MACHINE=i686 echo ${UNAME_MACHINE}-pc-sco$UNAME_REL else echo ${UNAME_MACHINE}-pc-sysv32 fi exit ;; pc:*:*:*) # Left here for compatibility: # uname -m prints for DJGPP always 'pc', but it prints nothing about # the processor, so we play safe by assuming i586. # Note: whatever this is, it MUST be the same as what config.sub # prints for the "djgpp" host, or else GDB configury will decide that # this is a cross-build. echo i586-pc-msdosdjgpp exit ;; Intel:Mach:3*:*) echo i386-pc-mach3 exit ;; paragon:*:*:*) echo i860-intel-osf1 exit ;; i860:*:4.*:*) # i860-SVR4 if grep Stardent /usr/include/sys/uadmin.h >/dev/null 2>&1 ; then echo i860-stardent-sysv${UNAME_RELEASE} # Stardent Vistra i860-SVR4 else # Add other i860-SVR4 vendors below as they are discovered. echo i860-unknown-sysv${UNAME_RELEASE} # Unknown i860-SVR4 fi exit ;; mini*:CTIX:SYS*5:*) # "miniframe" echo m68010-convergent-sysv exit ;; mc68k:UNIX:SYSTEM5:3.51m) echo m68k-convergent-sysv exit ;; M680?0:D-NIX:5.3:*) echo m68k-diab-dnix exit ;; M68*:*:R3V[5678]*:*) test -r /sysV68 && { echo 'm68k-motorola-sysv'; exit; } ;; 3[345]??:*:4.0:3.0 | 3[34]??A:*:4.0:3.0 | 3[34]??,*:*:4.0:3.0 | 3[34]??/*:*:4.0:3.0 | 4400:*:4.0:3.0 | 4850:*:4.0:3.0 | SKA40:*:4.0:3.0 | SDS2:*:4.0:3.0 | SHG2:*:4.0:3.0 | S7501*:*:4.0:3.0) OS_REL='' test -r /etc/.relid \ && OS_REL=.`sed -n 's/[^ ]* [^ ]* \([0-9][0-9]\).*/\1/p' < /etc/.relid` /bin/uname -p 2>/dev/null | grep 86 >/dev/null \ && { echo i486-ncr-sysv4.3${OS_REL}; exit; } /bin/uname -p 2>/dev/null | /bin/grep entium >/dev/null \ && { echo i586-ncr-sysv4.3${OS_REL}; exit; } ;; 3[34]??:*:4.0:* | 3[34]??,*:*:4.0:*) /bin/uname -p 2>/dev/null | grep 86 >/dev/null \ && { echo i486-ncr-sysv4; exit; } ;; NCR*:*:4.2:* | MPRAS*:*:4.2:*) OS_REL='.3' test -r /etc/.relid \ && OS_REL=.`sed -n 's/[^ ]* [^ ]* \([0-9][0-9]\).*/\1/p' < /etc/.relid` /bin/uname -p 2>/dev/null | grep 86 >/dev/null \ && { echo i486-ncr-sysv4.3${OS_REL}; exit; } /bin/uname -p 2>/dev/null | /bin/grep entium >/dev/null \ && { echo i586-ncr-sysv4.3${OS_REL}; exit; } /bin/uname -p 2>/dev/null | /bin/grep pteron >/dev/null \ && { echo i586-ncr-sysv4.3${OS_REL}; exit; } ;; m68*:LynxOS:2.*:* | m68*:LynxOS:3.0*:*) echo m68k-unknown-lynxos${UNAME_RELEASE} exit ;; mc68030:UNIX_System_V:4.*:*) echo m68k-atari-sysv4 exit ;; TSUNAMI:LynxOS:2.*:*) echo sparc-unknown-lynxos${UNAME_RELEASE} exit ;; rs6000:LynxOS:2.*:*) echo rs6000-unknown-lynxos${UNAME_RELEASE} exit ;; PowerPC:LynxOS:2.*:* | PowerPC:LynxOS:3.[01]*:* | PowerPC:LynxOS:4.[02]*:*) echo powerpc-unknown-lynxos${UNAME_RELEASE} exit ;; SM[BE]S:UNIX_SV:*:*) echo mips-dde-sysv${UNAME_RELEASE} exit ;; RM*:ReliantUNIX-*:*:*) echo mips-sni-sysv4 exit ;; RM*:SINIX-*:*:*) echo mips-sni-sysv4 exit ;; *:SINIX-*:*:*) if uname -p 2>/dev/null >/dev/null ; then UNAME_MACHINE=`(uname -p) 2>/dev/null` echo ${UNAME_MACHINE}-sni-sysv4 else echo ns32k-sni-sysv fi exit ;; PENTIUM:*:4.0*:*) # Unisys `ClearPath HMP IX 4000' SVR4/MP effort # says echo i586-unisys-sysv4 exit ;; *:UNIX_System_V:4*:FTX*) # From Gerald Hewes . # How about differentiating between stratus architectures? -djm echo hppa1.1-stratus-sysv4 exit ;; *:*:*:FTX*) # From seanf@swdc.stratus.com. echo i860-stratus-sysv4 exit ;; i*86:VOS:*:*) # From Paul.Green@stratus.com. echo ${UNAME_MACHINE}-stratus-vos exit ;; *:VOS:*:*) # From Paul.Green@stratus.com. echo hppa1.1-stratus-vos exit ;; mc68*:A/UX:*:*) echo m68k-apple-aux${UNAME_RELEASE} exit ;; news*:NEWS-OS:6*:*) echo mips-sony-newsos6 exit ;; R[34]000:*System_V*:*:* | R4000:UNIX_SYSV:*:* | R*000:UNIX_SV:*:*) if [ -d /usr/nec ]; then echo mips-nec-sysv${UNAME_RELEASE} else echo mips-unknown-sysv${UNAME_RELEASE} fi exit ;; BeBox:BeOS:*:*) # BeOS running on hardware made by Be, PPC only. echo powerpc-be-beos exit ;; BeMac:BeOS:*:*) # BeOS running on Mac or Mac clone, PPC only. echo powerpc-apple-beos exit ;; BePC:BeOS:*:*) # BeOS running on Intel PC compatible. echo i586-pc-beos exit ;; BePC:Haiku:*:*) # Haiku running on Intel PC compatible. echo i586-pc-haiku exit ;; x86_64:Haiku:*:*) echo x86_64-unknown-haiku exit ;; SX-4:SUPER-UX:*:*) echo sx4-nec-superux${UNAME_RELEASE} exit ;; SX-5:SUPER-UX:*:*) echo sx5-nec-superux${UNAME_RELEASE} exit ;; SX-6:SUPER-UX:*:*) echo sx6-nec-superux${UNAME_RELEASE} exit ;; SX-7:SUPER-UX:*:*) echo sx7-nec-superux${UNAME_RELEASE} exit ;; SX-8:SUPER-UX:*:*) echo sx8-nec-superux${UNAME_RELEASE} exit ;; SX-8R:SUPER-UX:*:*) echo sx8r-nec-superux${UNAME_RELEASE} exit ;; Power*:Rhapsody:*:*) echo powerpc-apple-rhapsody${UNAME_RELEASE} exit ;; *:Rhapsody:*:*) echo ${UNAME_MACHINE}-apple-rhapsody${UNAME_RELEASE} exit ;; *:Darwin:*:*) UNAME_PROCESSOR=`uname -p` || UNAME_PROCESSOR=unknown eval $set_cc_for_build if test "$UNAME_PROCESSOR" = unknown ; then UNAME_PROCESSOR=powerpc fi if test `echo "$UNAME_RELEASE" | sed -e 's/\..*//'` -le 10 ; then if [ "$CC_FOR_BUILD" != 'no_compiler_found' ]; then if (echo '#ifdef __LP64__'; echo IS_64BIT_ARCH; echo '#endif') | \ (CCOPTS= $CC_FOR_BUILD -E - 2>/dev/null) | \ grep IS_64BIT_ARCH >/dev/null then case $UNAME_PROCESSOR in i386) UNAME_PROCESSOR=x86_64 ;; powerpc) UNAME_PROCESSOR=powerpc64 ;; esac fi fi elif test "$UNAME_PROCESSOR" = i386 ; then # Avoid executing cc on OS X 10.9, as it ships with a stub # that puts up a graphical alert prompting to install # developer tools. Any system running Mac OS X 10.7 or # later (Darwin 11 and later) is required to have a 64-bit # processor. This is not true of the ARM version of Darwin # that Apple uses in portable devices. 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There is NO # warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. # GNU Libtool is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # As a special exception to the GNU General Public License, # if you distribute this file as part of a program or library that # is built using GNU Libtool, you may include this file under the # same distribution terms that you use for the rest of that program. # # GNU Libtool is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU # General Public License for more details. # # You should have received a copy of the GNU General Public License # along with GNU Libtool; see the file COPYING. If not, a copy # can be downloaded from http://www.gnu.org/licenses/gpl.html, # or obtained by writing to the Free Software Foundation, Inc., # 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. # Usage: $progname [OPTION]... [MODE-ARG]... # # Provide generalized library-building support services. # # --config show all configuration variables # --debug enable verbose shell tracing # -n, --dry-run display commands without modifying any files # --features display basic configuration information and exit # --mode=MODE use operation mode MODE # --preserve-dup-deps don't remove duplicate dependency libraries # --quiet, --silent don't print informational messages # --no-quiet, --no-silent # print informational messages (default) # --no-warn don't display warning messages # --tag=TAG use configuration variables from tag TAG # -v, --verbose print more informational messages than default # --no-verbose don't print the extra informational messages # --version print version information # -h, --help, --help-all print short, long, or detailed help message # # MODE must be one of the following: # # clean remove files from the build directory # compile compile a source file into a libtool object # execute automatically set library path, then run a program # finish complete the installation of libtool libraries # install install libraries or executables # link create a library or an executable # uninstall remove libraries from an installed directory # # MODE-ARGS vary depending on the MODE. When passed as first option, # `--mode=MODE' may be abbreviated as `MODE' or a unique abbreviation of that. # Try `$progname --help --mode=MODE' for a more detailed description of MODE. # # When reporting a bug, please describe a test case to reproduce it and # include the following information: # # host-triplet: $host # shell: $SHELL # compiler: $LTCC # compiler flags: $LTCFLAGS # linker: $LD (gnu? $with_gnu_ld) # $progname: (GNU libtool) 2.4.2 Debian-2.4.2-1.7 # automake: $automake_version # autoconf: $autoconf_version # # Report bugs to . # GNU libtool home page: . # General help using GNU software: . PROGRAM=libtool PACKAGE=libtool VERSION="2.4.2 Debian-2.4.2-1.7" TIMESTAMP="" package_revision=1.3337 # Be Bourne compatible if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then emulate sh NULLCMD=: # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which # is contrary to our usage. Disable this feature. alias -g '${1+"$@"}'='"$@"' setopt NO_GLOB_SUBST else case `(set -o) 2>/dev/null` in *posix*) set -o posix;; esac fi BIN_SH=xpg4; export BIN_SH # for Tru64 DUALCASE=1; export DUALCASE # for MKS sh # A function that is used when there is no print builtin or printf. func_fallback_echo () { eval 'cat <<_LTECHO_EOF $1 _LTECHO_EOF' } # NLS nuisances: We save the old values to restore during execute mode. lt_user_locale= lt_safe_locale= for lt_var in LANG LANGUAGE LC_ALL LC_CTYPE LC_COLLATE LC_MESSAGES do eval "if test \"\${$lt_var+set}\" = set; then save_$lt_var=\$$lt_var $lt_var=C export $lt_var lt_user_locale=\"$lt_var=\\\$save_\$lt_var; \$lt_user_locale\" lt_safe_locale=\"$lt_var=C; \$lt_safe_locale\" fi" done LC_ALL=C LANGUAGE=C export LANGUAGE LC_ALL $lt_unset CDPATH # Work around backward compatibility issue on IRIX 6.5. On IRIX 6.4+, sh # is ksh but when the shell is invoked as "sh" and the current value of # the _XPG environment variable is not equal to 1 (one), the special # positional parameter $0, within a function call, is the name of the # function. progpath="$0" : ${CP="cp -f"} test "${ECHO+set}" = set || ECHO=${as_echo-'printf %s\n'} : ${MAKE="make"} : ${MKDIR="mkdir"} : ${MV="mv -f"} : ${RM="rm -f"} : ${SHELL="${CONFIG_SHELL-/bin/sh}"} : ${Xsed="$SED -e 1s/^X//"} # Global variables: EXIT_SUCCESS=0 EXIT_FAILURE=1 EXIT_MISMATCH=63 # $? = 63 is used to indicate version mismatch to missing. EXIT_SKIP=77 # $? = 77 is used to indicate a skipped test to automake. exit_status=$EXIT_SUCCESS # Make sure IFS has a sensible default lt_nl=' ' IFS=" $lt_nl" dirname="s,/[^/]*$,," basename="s,^.*/,," # func_dirname file append nondir_replacement # Compute the dirname of FILE. If nonempty, add APPEND to the result, # otherwise set result to NONDIR_REPLACEMENT. func_dirname () { func_dirname_result=`$ECHO "${1}" | $SED "$dirname"` if test "X$func_dirname_result" = "X${1}"; then func_dirname_result="${3}" else func_dirname_result="$func_dirname_result${2}" fi } # func_dirname may be replaced by extended shell implementation # func_basename file func_basename () { func_basename_result=`$ECHO "${1}" | $SED "$basename"` } # func_basename may be replaced by extended shell implementation # func_dirname_and_basename file append nondir_replacement # perform func_basename and func_dirname in a single function # call: # dirname: Compute the dirname of FILE. If nonempty, # add APPEND to the result, otherwise set result # to NONDIR_REPLACEMENT. # value returned in "$func_dirname_result" # basename: Compute filename of FILE. # value retuned in "$func_basename_result" # Implementation must be kept synchronized with func_dirname # and func_basename. For efficiency, we do not delegate to # those functions but instead duplicate the functionality here. func_dirname_and_basename () { # Extract subdirectory from the argument. func_dirname_result=`$ECHO "${1}" | $SED -e "$dirname"` if test "X$func_dirname_result" = "X${1}"; then func_dirname_result="${3}" else func_dirname_result="$func_dirname_result${2}" fi func_basename_result=`$ECHO "${1}" | $SED -e "$basename"` } # func_dirname_and_basename may be replaced by extended shell implementation # func_stripname prefix suffix name # strip PREFIX and SUFFIX off of NAME. # PREFIX and SUFFIX must not contain globbing or regex special # characters, hashes, percent signs, but SUFFIX may contain a leading # dot (in which case that matches only a dot). # func_strip_suffix prefix name func_stripname () { case ${2} in .*) func_stripname_result=`$ECHO "${3}" | $SED "s%^${1}%%; s%\\\\${2}\$%%"`;; *) func_stripname_result=`$ECHO "${3}" | $SED "s%^${1}%%; s%${2}\$%%"`;; esac } # func_stripname may be replaced by extended shell implementation # These SED scripts presuppose an absolute path with a trailing slash. pathcar='s,^/\([^/]*\).*$,\1,' pathcdr='s,^/[^/]*,,' removedotparts=':dotsl s@/\./@/@g t dotsl s,/\.$,/,' collapseslashes='s@/\{1,\}@/@g' finalslash='s,/*$,/,' # func_normal_abspath PATH # Remove doubled-up and trailing slashes, "." path components, # and cancel out any ".." path components in PATH after making # it an absolute path. # value returned in "$func_normal_abspath_result" func_normal_abspath () { # Start from root dir and reassemble the path. func_normal_abspath_result= func_normal_abspath_tpath=$1 func_normal_abspath_altnamespace= case $func_normal_abspath_tpath in "") # Empty path, that just means $cwd. func_stripname '' '/' "`pwd`" func_normal_abspath_result=$func_stripname_result return ;; # The next three entries are used to spot a run of precisely # two leading slashes without using negated character classes; # we take advantage of case's first-match behaviour. ///*) # Unusual form of absolute path, do nothing. ;; //*) # Not necessarily an ordinary path; POSIX reserves leading '//' # and for example Cygwin uses it to access remote file shares # over CIFS/SMB, so we conserve a leading double slash if found. func_normal_abspath_altnamespace=/ ;; /*) # Absolute path, do nothing. ;; *) # Relative path, prepend $cwd. func_normal_abspath_tpath=`pwd`/$func_normal_abspath_tpath ;; esac # Cancel out all the simple stuff to save iterations. 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If bindir is libdir, return empty string, # else relative path ending with a slash; either way, target # file name can be directly appended. if test ! -z "$func_relative_path_result"; then func_stripname './' '' "$func_relative_path_result/" func_relative_path_result=$func_stripname_result fi } # The name of this program: func_dirname_and_basename "$progpath" progname=$func_basename_result # Make sure we have an absolute path for reexecution: case $progpath in [\\/]*|[A-Za-z]:\\*) ;; *[\\/]*) progdir=$func_dirname_result progdir=`cd "$progdir" && pwd` progpath="$progdir/$progname" ;; *) save_IFS="$IFS" IFS=${PATH_SEPARATOR-:} for progdir in $PATH; do IFS="$save_IFS" test -x "$progdir/$progname" && break done IFS="$save_IFS" test -n "$progdir" || progdir=`pwd` progpath="$progdir/$progname" ;; esac # Sed substitution that helps us do robust quoting. It backslashifies # metacharacters that are still active within double-quoted strings. Xsed="${SED}"' -e 1s/^X//' sed_quote_subst='s/\([`"$\\]\)/\\\1/g' # Same as above, but do not quote variable references. double_quote_subst='s/\(["`\\]\)/\\\1/g' # Sed substitution that turns a string into a regex matching for the # string literally. sed_make_literal_regex='s,[].[^$\\*\/],\\&,g' # Sed substitution that converts a w32 file name or path # which contains forward slashes, into one that contains # (escaped) backslashes. A very naive implementation. lt_sed_naive_backslashify='s|\\\\*|\\|g;s|/|\\|g;s|\\|\\\\|g' # Re-`\' parameter expansions in output of double_quote_subst that were # `\'-ed in input to the same. If an odd number of `\' preceded a '$' # in input to double_quote_subst, that '$' was protected from expansion. # Since each input `\' is now two `\'s, look for any number of runs of # four `\'s followed by two `\'s and then a '$'. `\' that '$'. bs='\\' bs2='\\\\' bs4='\\\\\\\\' dollar='\$' sed_double_backslash="\ s/$bs4/&\\ /g s/^$bs2$dollar/$bs&/ s/\\([^$bs]\\)$bs2$dollar/\\1$bs2$bs$dollar/g s/\n//g" # Standard options: opt_dry_run=false opt_help=false opt_quiet=false opt_verbose=false opt_warning=: # func_echo arg... # Echo program name prefixed message, along with the current mode # name if it has been set yet. func_echo () { $ECHO "$progname: ${opt_mode+$opt_mode: }$*" } # func_verbose arg... # Echo program name prefixed message in verbose mode only. func_verbose () { $opt_verbose && func_echo ${1+"$@"} # A bug in bash halts the script if the last line of a function # fails when set -e is in force, so we need another command to # work around that: : } # func_echo_all arg... # Invoke $ECHO with all args, space-separated. func_echo_all () { $ECHO "$*" } # func_error arg... # Echo program name prefixed message to standard error. func_error () { $ECHO "$progname: ${opt_mode+$opt_mode: }"${1+"$@"} 1>&2 } # func_warning arg... # Echo program name prefixed warning message to standard error. func_warning () { $opt_warning && $ECHO "$progname: ${opt_mode+$opt_mode: }warning: "${1+"$@"} 1>&2 # bash bug again: : } # func_fatal_error arg... # Echo program name prefixed message to standard error, and exit. func_fatal_error () { func_error ${1+"$@"} exit $EXIT_FAILURE } # func_fatal_help arg... # Echo program name prefixed message to standard error, followed by # a help hint, and exit. func_fatal_help () { func_error ${1+"$@"} func_fatal_error "$help" } help="Try \`$progname --help' for more information." ## default # func_grep expression filename # Check whether EXPRESSION matches any line of FILENAME, without output. func_grep () { $GREP "$1" "$2" >/dev/null 2>&1 } # func_mkdir_p directory-path # Make sure the entire path to DIRECTORY-PATH is available. func_mkdir_p () { my_directory_path="$1" my_dir_list= if test -n "$my_directory_path" && test "$opt_dry_run" != ":"; then # Protect directory names starting with `-' case $my_directory_path in -*) my_directory_path="./$my_directory_path" ;; esac # While some portion of DIR does not yet exist... while test ! -d "$my_directory_path"; do # ...make a list in topmost first order. Use a colon delimited # list incase some portion of path contains whitespace. my_dir_list="$my_directory_path:$my_dir_list" # If the last portion added has no slash in it, the list is done case $my_directory_path in */*) ;; *) break ;; esac # ...otherwise throw away the child directory and loop my_directory_path=`$ECHO "$my_directory_path" | $SED -e "$dirname"` done my_dir_list=`$ECHO "$my_dir_list" | $SED 's,:*$,,'` save_mkdir_p_IFS="$IFS"; IFS=':' for my_dir in $my_dir_list; do IFS="$save_mkdir_p_IFS" # mkdir can fail with a `File exist' error if two processes # try to create one of the directories concurrently. Don't # stop in that case! $MKDIR "$my_dir" 2>/dev/null || : done IFS="$save_mkdir_p_IFS" # Bail out if we (or some other process) failed to create a directory. test -d "$my_directory_path" || \ func_fatal_error "Failed to create \`$1'" fi } # func_mktempdir [string] # Make a temporary directory that won't clash with other running # libtool processes, and avoids race conditions if possible. If # given, STRING is the basename for that directory. func_mktempdir () { my_template="${TMPDIR-/tmp}/${1-$progname}" if test "$opt_dry_run" = ":"; then # Return a directory name, but don't create it in dry-run mode my_tmpdir="${my_template}-$$" else # If mktemp works, use that first and foremost my_tmpdir=`mktemp -d "${my_template}-XXXXXXXX" 2>/dev/null` if test ! -d "$my_tmpdir"; then # Failing that, at least try and use $RANDOM to avoid a race my_tmpdir="${my_template}-${RANDOM-0}$$" save_mktempdir_umask=`umask` umask 0077 $MKDIR "$my_tmpdir" umask $save_mktempdir_umask fi # If we're not in dry-run mode, bomb out on failure test -d "$my_tmpdir" || \ func_fatal_error "cannot create temporary directory \`$my_tmpdir'" fi $ECHO "$my_tmpdir" } # func_quote_for_eval arg # Aesthetically quote ARG to be evaled later. # This function returns two values: FUNC_QUOTE_FOR_EVAL_RESULT # is double-quoted, suitable for a subsequent eval, whereas # FUNC_QUOTE_FOR_EVAL_UNQUOTED_RESULT has merely all characters # which are still active within double quotes backslashified. func_quote_for_eval () { case $1 in *[\\\`\"\$]*) func_quote_for_eval_unquoted_result=`$ECHO "$1" | $SED "$sed_quote_subst"` ;; *) func_quote_for_eval_unquoted_result="$1" ;; esac case $func_quote_for_eval_unquoted_result in # Double-quote args containing shell metacharacters to delay # word splitting, command substitution and and variable # expansion for a subsequent eval. # Many Bourne shells cannot handle close brackets correctly # in scan sets, so we specify it separately. *[\[\~\#\^\&\*\(\)\{\}\|\;\<\>\?\'\ \ ]*|*]*|"") func_quote_for_eval_result="\"$func_quote_for_eval_unquoted_result\"" ;; *) func_quote_for_eval_result="$func_quote_for_eval_unquoted_result" esac } # func_quote_for_expand arg # Aesthetically quote ARG to be evaled later; same as above, # but do not quote variable references. func_quote_for_expand () { case $1 in *[\\\`\"]*) my_arg=`$ECHO "$1" | $SED \ -e "$double_quote_subst" -e "$sed_double_backslash"` ;; *) my_arg="$1" ;; esac case $my_arg in # Double-quote args containing shell metacharacters to delay # word splitting and command substitution for a subsequent eval. # Many Bourne shells cannot handle close brackets correctly # in scan sets, so we specify it separately. *[\[\~\#\^\&\*\(\)\{\}\|\;\<\>\?\'\ \ ]*|*]*|"") my_arg="\"$my_arg\"" ;; esac func_quote_for_expand_result="$my_arg" } # func_show_eval cmd [fail_exp] # Unless opt_silent is true, then output CMD. Then, if opt_dryrun is # not true, evaluate CMD. If the evaluation of CMD fails, and FAIL_EXP # is given, then evaluate it. func_show_eval () { my_cmd="$1" my_fail_exp="${2-:}" ${opt_silent-false} || { func_quote_for_expand "$my_cmd" eval "func_echo $func_quote_for_expand_result" } if ${opt_dry_run-false}; then :; else eval "$my_cmd" my_status=$? if test "$my_status" -eq 0; then :; else eval "(exit $my_status); $my_fail_exp" fi fi } # func_show_eval_locale cmd [fail_exp] # Unless opt_silent is true, then output CMD. Then, if opt_dryrun is # not true, evaluate CMD. If the evaluation of CMD fails, and FAIL_EXP # is given, then evaluate it. Use the saved locale for evaluation. func_show_eval_locale () { my_cmd="$1" my_fail_exp="${2-:}" ${opt_silent-false} || { func_quote_for_expand "$my_cmd" eval "func_echo $func_quote_for_expand_result" } if ${opt_dry_run-false}; then :; else eval "$lt_user_locale $my_cmd" my_status=$? eval "$lt_safe_locale" if test "$my_status" -eq 0; then :; else eval "(exit $my_status); $my_fail_exp" fi fi } # func_tr_sh # Turn $1 into a string suitable for a shell variable name. # Result is stored in $func_tr_sh_result. All characters # not in the set a-zA-Z0-9_ are replaced with '_'. Further, # if $1 begins with a digit, a '_' is prepended as well. func_tr_sh () { case $1 in [0-9]* | *[!a-zA-Z0-9_]*) func_tr_sh_result=`$ECHO "$1" | $SED 's/^\([0-9]\)/_\1/; s/[^a-zA-Z0-9_]/_/g'` ;; * ) func_tr_sh_result=$1 ;; esac } # func_version # Echo version message to standard output and exit. func_version () { $opt_debug $SED -n '/(C)/!b go :more /\./!{ N s/\n# / / b more } :go /^# '$PROGRAM' (GNU /,/# warranty; / { s/^# // s/^# *$// s/\((C)\)[ 0-9,-]*\( [1-9][0-9]*\)/\1\2/ p }' < "$progpath" exit $? } # func_usage # Echo short help message to standard output and exit. func_usage () { $opt_debug $SED -n '/^# Usage:/,/^# *.*--help/ { s/^# // s/^# *$// s/\$progname/'$progname'/ p }' < "$progpath" echo $ECHO "run \`$progname --help | more' for full usage" exit $? } # func_help [NOEXIT] # Echo long help message to standard output and exit, # unless 'noexit' is passed as argument. func_help () { $opt_debug $SED -n '/^# Usage:/,/# Report bugs to/ { :print s/^# // s/^# *$// s*\$progname*'$progname'* s*\$host*'"$host"'* s*\$SHELL*'"$SHELL"'* s*\$LTCC*'"$LTCC"'* s*\$LTCFLAGS*'"$LTCFLAGS"'* s*\$LD*'"$LD"'* s/\$with_gnu_ld/'"$with_gnu_ld"'/ s/\$automake_version/'"`(${AUTOMAKE-automake} --version) 2>/dev/null |$SED 1q`"'/ s/\$autoconf_version/'"`(${AUTOCONF-autoconf} --version) 2>/dev/null |$SED 1q`"'/ p d } /^# .* home page:/b print /^# General help using/b print ' < "$progpath" ret=$? if test -z "$1"; then exit $ret fi } # func_missing_arg argname # Echo program name prefixed message to standard error and set global # exit_cmd. func_missing_arg () { $opt_debug func_error "missing argument for $1." exit_cmd=exit } # func_split_short_opt shortopt # Set func_split_short_opt_name and func_split_short_opt_arg shell # variables after splitting SHORTOPT after the 2nd character. func_split_short_opt () { my_sed_short_opt='1s/^\(..\).*$/\1/;q' my_sed_short_rest='1s/^..\(.*\)$/\1/;q' func_split_short_opt_name=`$ECHO "$1" | $SED "$my_sed_short_opt"` func_split_short_opt_arg=`$ECHO "$1" | $SED "$my_sed_short_rest"` } # func_split_short_opt may be replaced by extended shell implementation # func_split_long_opt longopt # Set func_split_long_opt_name and func_split_long_opt_arg shell # variables after splitting LONGOPT at the `=' sign. func_split_long_opt () { my_sed_long_opt='1s/^\(--[^=]*\)=.*/\1/;q' my_sed_long_arg='1s/^--[^=]*=//' func_split_long_opt_name=`$ECHO "$1" | $SED "$my_sed_long_opt"` func_split_long_opt_arg=`$ECHO "$1" | $SED "$my_sed_long_arg"` } # func_split_long_opt may be replaced by extended shell implementation exit_cmd=: magic="%%%MAGIC variable%%%" magic_exe="%%%MAGIC EXE variable%%%" # Global variables. nonopt= preserve_args= lo2o="s/\\.lo\$/.${objext}/" o2lo="s/\\.${objext}\$/.lo/" extracted_archives= extracted_serial=0 # If this variable is set in any of the actions, the command in it # will be execed at the end. This prevents here-documents from being # left over by shells. exec_cmd= # func_append var value # Append VALUE to the end of shell variable VAR. func_append () { eval "${1}=\$${1}\${2}" } # func_append may be replaced by extended shell implementation # func_append_quoted var value # Quote VALUE and append to the end of shell variable VAR, separated # by a space. func_append_quoted () { func_quote_for_eval "${2}" eval "${1}=\$${1}\\ \$func_quote_for_eval_result" } # func_append_quoted may be replaced by extended shell implementation # func_arith arithmetic-term... func_arith () { func_arith_result=`expr "${@}"` } # func_arith may be replaced by extended shell implementation # func_len string # STRING may not start with a hyphen. func_len () { func_len_result=`expr "${1}" : ".*" 2>/dev/null || echo $max_cmd_len` } # func_len may be replaced by extended shell implementation # func_lo2o object func_lo2o () { func_lo2o_result=`$ECHO "${1}" | $SED "$lo2o"` } # func_lo2o may be replaced by extended shell implementation # func_xform libobj-or-source func_xform () { func_xform_result=`$ECHO "${1}" | $SED 's/\.[^.]*$/.lo/'` } # func_xform may be replaced by extended shell implementation # func_fatal_configuration arg... # Echo program name prefixed message to standard error, followed by # a configuration failure hint, and exit. func_fatal_configuration () { func_error ${1+"$@"} func_error "See the $PACKAGE documentation for more information." func_fatal_error "Fatal configuration error." } # func_config # Display the configuration for all the tags in this script. func_config () { re_begincf='^# ### BEGIN LIBTOOL' re_endcf='^# ### END LIBTOOL' # Default configuration. $SED "1,/$re_begincf CONFIG/d;/$re_endcf CONFIG/,\$d" < "$progpath" # Now print the configurations for the tags. for tagname in $taglist; do $SED -n "/$re_begincf TAG CONFIG: $tagname\$/,/$re_endcf TAG CONFIG: $tagname\$/p" < "$progpath" done exit $? } # func_features # Display the features supported by this script. func_features () { echo "host: $host" if test "$build_libtool_libs" = yes; then echo "enable shared libraries" else echo "disable shared libraries" fi if test "$build_old_libs" = yes; then echo "enable static libraries" else echo "disable static libraries" fi exit $? } # func_enable_tag tagname # Verify that TAGNAME is valid, and either flag an error and exit, or # enable the TAGNAME tag. We also add TAGNAME to the global $taglist # variable here. func_enable_tag () { # Global variable: tagname="$1" re_begincf="^# ### BEGIN LIBTOOL TAG CONFIG: $tagname\$" re_endcf="^# ### END LIBTOOL TAG CONFIG: $tagname\$" sed_extractcf="/$re_begincf/,/$re_endcf/p" # Validate tagname. case $tagname in *[!-_A-Za-z0-9,/]*) func_fatal_error "invalid tag name: $tagname" ;; esac # Don't test for the "default" C tag, as we know it's # there but not specially marked. case $tagname in CC) ;; *) if $GREP "$re_begincf" "$progpath" >/dev/null 2>&1; then taglist="$taglist $tagname" # Evaluate the configuration. Be careful to quote the path # and the sed script, to avoid splitting on whitespace, but # also don't use non-portable quotes within backquotes within # quotes we have to do it in 2 steps: extractedcf=`$SED -n -e "$sed_extractcf" < "$progpath"` eval "$extractedcf" else func_error "ignoring unknown tag $tagname" fi ;; esac } # func_check_version_match # Ensure that we are using m4 macros, and libtool script from the same # release of libtool. func_check_version_match () { if test "$package_revision" != "$macro_revision"; then if test "$VERSION" != "$macro_version"; then if test -z "$macro_version"; then cat >&2 <<_LT_EOF $progname: Version mismatch error. This is $PACKAGE $VERSION, but the $progname: definition of this LT_INIT comes from an older release. $progname: You should recreate aclocal.m4 with macros from $PACKAGE $VERSION $progname: and run autoconf again. _LT_EOF else cat >&2 <<_LT_EOF $progname: Version mismatch error. This is $PACKAGE $VERSION, but the $progname: definition of this LT_INIT comes from $PACKAGE $macro_version. $progname: You should recreate aclocal.m4 with macros from $PACKAGE $VERSION $progname: and run autoconf again. _LT_EOF fi else cat >&2 <<_LT_EOF $progname: Version mismatch error. This is $PACKAGE $VERSION, revision $package_revision, $progname: but the definition of this LT_INIT comes from revision $macro_revision. $progname: You should recreate aclocal.m4 with macros from revision $package_revision $progname: of $PACKAGE $VERSION and run autoconf again. _LT_EOF fi exit $EXIT_MISMATCH fi } # Shorthand for --mode=foo, only valid as the first argument case $1 in clean|clea|cle|cl) shift; set dummy --mode clean ${1+"$@"}; shift ;; compile|compil|compi|comp|com|co|c) shift; set dummy --mode compile ${1+"$@"}; shift ;; execute|execut|execu|exec|exe|ex|e) shift; set dummy --mode execute ${1+"$@"}; shift ;; finish|finis|fini|fin|fi|f) shift; set dummy --mode finish ${1+"$@"}; shift ;; install|instal|insta|inst|ins|in|i) shift; set dummy --mode install ${1+"$@"}; shift ;; link|lin|li|l) shift; set dummy --mode link ${1+"$@"}; shift ;; uninstall|uninstal|uninsta|uninst|unins|unin|uni|un|u) shift; set dummy --mode uninstall ${1+"$@"}; shift ;; esac # Option defaults: opt_debug=: opt_dry_run=false opt_config=false opt_preserve_dup_deps=false opt_features=false opt_finish=false opt_help=false opt_help_all=false opt_silent=: opt_warning=: opt_verbose=: opt_silent=false opt_verbose=false # Parse options once, thoroughly. This comes as soon as possible in the # script to make things like `--version' happen as quickly as we can. { # this just eases exit handling while test $# -gt 0; do opt="$1" shift case $opt in --debug|-x) opt_debug='set -x' func_echo "enabling shell trace mode" $opt_debug ;; --dry-run|--dryrun|-n) opt_dry_run=: ;; --config) opt_config=: func_config ;; --dlopen|-dlopen) optarg="$1" opt_dlopen="${opt_dlopen+$opt_dlopen }$optarg" shift ;; --preserve-dup-deps) opt_preserve_dup_deps=: ;; --features) opt_features=: func_features ;; --finish) opt_finish=: set dummy --mode finish ${1+"$@"}; shift ;; --help) opt_help=: ;; --help-all) opt_help_all=: opt_help=': help-all' ;; --mode) test $# = 0 && func_missing_arg $opt && break optarg="$1" opt_mode="$optarg" case $optarg in # Valid mode arguments: clean|compile|execute|finish|install|link|relink|uninstall) ;; # Catch anything else as an error *) func_error "invalid argument for $opt" exit_cmd=exit break ;; esac shift ;; --no-silent|--no-quiet) opt_silent=false func_append preserve_args " $opt" ;; --no-warning|--no-warn) opt_warning=false func_append preserve_args " $opt" ;; --no-verbose) opt_verbose=false func_append preserve_args " $opt" ;; --silent|--quiet) opt_silent=: func_append preserve_args " $opt" opt_verbose=false ;; --verbose|-v) opt_verbose=: func_append preserve_args " $opt" opt_silent=false ;; --tag) test $# = 0 && func_missing_arg $opt && break optarg="$1" opt_tag="$optarg" func_append preserve_args " $opt $optarg" func_enable_tag "$optarg" shift ;; -\?|-h) func_usage ;; --help) func_help ;; --version) func_version ;; # Separate optargs to long options: --*=*) func_split_long_opt "$opt" set dummy "$func_split_long_opt_name" "$func_split_long_opt_arg" ${1+"$@"} shift ;; # Separate non-argument short options: -\?*|-h*|-n*|-v*) func_split_short_opt "$opt" set dummy "$func_split_short_opt_name" "-$func_split_short_opt_arg" ${1+"$@"} shift ;; --) break ;; -*) func_fatal_help "unrecognized option \`$opt'" ;; *) set dummy "$opt" ${1+"$@"}; shift; break ;; esac done # Validate options: # save first non-option argument if test "$#" -gt 0; then nonopt="$opt" shift fi # preserve --debug test "$opt_debug" = : || func_append preserve_args " --debug" case $host in *cygwin* | *mingw* | *pw32* | *cegcc*) # don't eliminate duplications in $postdeps and $predeps opt_duplicate_compiler_generated_deps=: ;; *) opt_duplicate_compiler_generated_deps=$opt_preserve_dup_deps ;; esac $opt_help || { # Sanity checks first: func_check_version_match if test "$build_libtool_libs" != yes && test "$build_old_libs" != yes; then func_fatal_configuration "not configured to build any kind of library" fi # Darwin sucks eval std_shrext=\"$shrext_cmds\" # Only execute mode is allowed to have -dlopen flags. if test -n "$opt_dlopen" && test "$opt_mode" != execute; then func_error "unrecognized option \`-dlopen'" $ECHO "$help" 1>&2 exit $EXIT_FAILURE fi # Change the help message to a mode-specific one. generic_help="$help" help="Try \`$progname --help --mode=$opt_mode' for more information." } # Bail if the options were screwed $exit_cmd $EXIT_FAILURE } ## ----------- ## ## Main. ## ## ----------- ## # func_lalib_p file # True iff FILE is a libtool `.la' library or `.lo' object file. # This function is only a basic sanity check; it will hardly flush out # determined imposters. func_lalib_p () { test -f "$1" && $SED -e 4q "$1" 2>/dev/null \ | $GREP "^# Generated by .*$PACKAGE" > /dev/null 2>&1 } # func_lalib_unsafe_p file # True iff FILE is a libtool `.la' library or `.lo' object file. # This function implements the same check as func_lalib_p without # resorting to external programs. To this end, it redirects stdin and # closes it afterwards, without saving the original file descriptor. # As a safety measure, use it only where a negative result would be # fatal anyway. Works if `file' does not exist. func_lalib_unsafe_p () { lalib_p=no if test -f "$1" && test -r "$1" && exec 5<&0 <"$1"; then for lalib_p_l in 1 2 3 4 do read lalib_p_line case "$lalib_p_line" in \#\ Generated\ by\ *$PACKAGE* ) lalib_p=yes; break;; esac done exec 0<&5 5<&- fi test "$lalib_p" = yes } # func_ltwrapper_script_p file # True iff FILE is a libtool wrapper script # This function is only a basic sanity check; it will hardly flush out # determined imposters. func_ltwrapper_script_p () { func_lalib_p "$1" } # func_ltwrapper_executable_p file # True iff FILE is a libtool wrapper executable # This function is only a basic sanity check; it will hardly flush out # determined imposters. func_ltwrapper_executable_p () { func_ltwrapper_exec_suffix= case $1 in *.exe) ;; *) func_ltwrapper_exec_suffix=.exe ;; esac $GREP "$magic_exe" "$1$func_ltwrapper_exec_suffix" >/dev/null 2>&1 } # func_ltwrapper_scriptname file # Assumes file is an ltwrapper_executable # uses $file to determine the appropriate filename for a # temporary ltwrapper_script. func_ltwrapper_scriptname () { func_dirname_and_basename "$1" "" "." func_stripname '' '.exe' "$func_basename_result" func_ltwrapper_scriptname_result="$func_dirname_result/$objdir/${func_stripname_result}_ltshwrapper" } # func_ltwrapper_p file # True iff FILE is a libtool wrapper script or wrapper executable # This function is only a basic sanity check; it will hardly flush out # determined imposters. func_ltwrapper_p () { func_ltwrapper_script_p "$1" || func_ltwrapper_executable_p "$1" } # func_execute_cmds commands fail_cmd # Execute tilde-delimited COMMANDS. # If FAIL_CMD is given, eval that upon failure. # FAIL_CMD may read-access the current command in variable CMD! func_execute_cmds () { $opt_debug save_ifs=$IFS; IFS='~' for cmd in $1; do IFS=$save_ifs eval cmd=\"$cmd\" func_show_eval "$cmd" "${2-:}" done IFS=$save_ifs } # func_source file # Source FILE, adding directory component if necessary. # Note that it is not necessary on cygwin/mingw to append a dot to # FILE even if both FILE and FILE.exe exist: automatic-append-.exe # behavior happens only for exec(3), not for open(2)! Also, sourcing # `FILE.' does not work on cygwin managed mounts. func_source () { $opt_debug case $1 in */* | *\\*) . "$1" ;; *) . "./$1" ;; esac } # func_resolve_sysroot PATH # Replace a leading = in PATH with a sysroot. Store the result into # func_resolve_sysroot_result func_resolve_sysroot () { func_resolve_sysroot_result=$1 case $func_resolve_sysroot_result in =*) func_stripname '=' '' "$func_resolve_sysroot_result" func_resolve_sysroot_result=$lt_sysroot$func_stripname_result ;; esac } # func_replace_sysroot PATH # If PATH begins with the sysroot, replace it with = and # store the result into func_replace_sysroot_result. func_replace_sysroot () { case "$lt_sysroot:$1" in ?*:"$lt_sysroot"*) func_stripname "$lt_sysroot" '' "$1" func_replace_sysroot_result="=$func_stripname_result" ;; *) # Including no sysroot. func_replace_sysroot_result=$1 ;; esac } # func_infer_tag arg # Infer tagged configuration to use if any are available and # if one wasn't chosen via the "--tag" command line option. # Only attempt this if the compiler in the base compile # command doesn't match the default compiler. # arg is usually of the form 'gcc ...' func_infer_tag () { $opt_debug if test -n "$available_tags" && test -z "$tagname"; then CC_quoted= for arg in $CC; do func_append_quoted CC_quoted "$arg" done CC_expanded=`func_echo_all $CC` CC_quoted_expanded=`func_echo_all $CC_quoted` case $@ in # Blanks in the command may have been stripped by the calling shell, # but not from the CC environment variable when configure was run. " $CC "* | "$CC "* | " $CC_expanded "* | "$CC_expanded "* | \ " $CC_quoted"* | "$CC_quoted "* | " $CC_quoted_expanded "* | "$CC_quoted_expanded "*) ;; # Blanks at the start of $base_compile will cause this to fail # if we don't check for them as well. *) for z in $available_tags; do if $GREP "^# ### BEGIN LIBTOOL TAG CONFIG: $z$" < "$progpath" > /dev/null; then # Evaluate the configuration. eval "`${SED} -n -e '/^# ### BEGIN LIBTOOL TAG CONFIG: '$z'$/,/^# ### END LIBTOOL TAG CONFIG: '$z'$/p' < $progpath`" CC_quoted= for arg in $CC; do # Double-quote args containing other shell metacharacters. func_append_quoted CC_quoted "$arg" done CC_expanded=`func_echo_all $CC` CC_quoted_expanded=`func_echo_all $CC_quoted` case "$@ " in " $CC "* | "$CC "* | " $CC_expanded "* | "$CC_expanded "* | \ " $CC_quoted"* | "$CC_quoted "* | " $CC_quoted_expanded "* | "$CC_quoted_expanded "*) # The compiler in the base compile command matches # the one in the tagged configuration. # Assume this is the tagged configuration we want. tagname=$z break ;; esac fi done # If $tagname still isn't set, then no tagged configuration # was found and let the user know that the "--tag" command # line option must be used. if test -z "$tagname"; then func_echo "unable to infer tagged configuration" func_fatal_error "specify a tag with \`--tag'" # else # func_verbose "using $tagname tagged configuration" fi ;; esac fi } # func_write_libtool_object output_name pic_name nonpic_name # Create a libtool object file (analogous to a ".la" file), # but don't create it if we're doing a dry run. func_write_libtool_object () { write_libobj=${1} if test "$build_libtool_libs" = yes; then write_lobj=\'${2}\' else write_lobj=none fi if test "$build_old_libs" = yes; then write_oldobj=\'${3}\' else write_oldobj=none fi $opt_dry_run || { cat >${write_libobj}T </dev/null` if test "$?" -eq 0 && test -n "${func_convert_core_file_wine_to_w32_tmp}"; then func_convert_core_file_wine_to_w32_result=`$ECHO "$func_convert_core_file_wine_to_w32_tmp" | $SED -e "$lt_sed_naive_backslashify"` else func_convert_core_file_wine_to_w32_result= fi fi } # end: func_convert_core_file_wine_to_w32 # func_convert_core_path_wine_to_w32 ARG # Helper function used by path conversion functions when $build is *nix, and # $host is mingw, cygwin, or some other w32 environment. Relies on a correctly # configured wine environment available, with the winepath program in $build's # $PATH. Assumes ARG has no leading or trailing path separator characters. # # ARG is path to be converted from $build format to win32. # Result is available in $func_convert_core_path_wine_to_w32_result. # Unconvertible file (directory) names in ARG are skipped; if no directory names # are convertible, then the result may be empty. func_convert_core_path_wine_to_w32 () { $opt_debug # unfortunately, winepath doesn't convert paths, only file names func_convert_core_path_wine_to_w32_result="" if test -n "$1"; then oldIFS=$IFS IFS=: for func_convert_core_path_wine_to_w32_f in $1; do IFS=$oldIFS func_convert_core_file_wine_to_w32 "$func_convert_core_path_wine_to_w32_f" if test -n "$func_convert_core_file_wine_to_w32_result" ; then if test -z "$func_convert_core_path_wine_to_w32_result"; then func_convert_core_path_wine_to_w32_result="$func_convert_core_file_wine_to_w32_result" else func_append func_convert_core_path_wine_to_w32_result ";$func_convert_core_file_wine_to_w32_result" fi fi done IFS=$oldIFS fi } # end: func_convert_core_path_wine_to_w32 # func_cygpath ARGS... # Wrapper around calling the cygpath program via LT_CYGPATH. This is used when # when (1) $build is *nix and Cygwin is hosted via a wine environment; or (2) # $build is MSYS and $host is Cygwin, or (3) $build is Cygwin. In case (1) or # (2), returns the Cygwin file name or path in func_cygpath_result (input # file name or path is assumed to be in w32 format, as previously converted # from $build's *nix or MSYS format). In case (3), returns the w32 file name # or path in func_cygpath_result (input file name or path is assumed to be in # Cygwin format). Returns an empty string on error. # # ARGS are passed to cygpath, with the last one being the file name or path to # be converted. # # Specify the absolute *nix (or w32) name to cygpath in the LT_CYGPATH # environment variable; do not put it in $PATH. func_cygpath () { $opt_debug if test -n "$LT_CYGPATH" && test -f "$LT_CYGPATH"; then func_cygpath_result=`$LT_CYGPATH "$@" 2>/dev/null` if test "$?" -ne 0; then # on failure, ensure result is empty func_cygpath_result= fi else func_cygpath_result= func_error "LT_CYGPATH is empty or specifies non-existent file: \`$LT_CYGPATH'" fi } #end: func_cygpath # func_convert_core_msys_to_w32 ARG # Convert file name or path ARG from MSYS format to w32 format. Return # result in func_convert_core_msys_to_w32_result. func_convert_core_msys_to_w32 () { $opt_debug # awkward: cmd appends spaces to result func_convert_core_msys_to_w32_result=`( cmd //c echo "$1" ) 2>/dev/null | $SED -e 's/[ ]*$//' -e "$lt_sed_naive_backslashify"` } #end: func_convert_core_msys_to_w32 # func_convert_file_check ARG1 ARG2 # Verify that ARG1 (a file name in $build format) was converted to $host # format in ARG2. Otherwise, emit an error message, but continue (resetting # func_to_host_file_result to ARG1). func_convert_file_check () { $opt_debug if test -z "$2" && test -n "$1" ; then func_error "Could not determine host file name corresponding to" func_error " \`$1'" func_error "Continuing, but uninstalled executables may not work." # Fallback: func_to_host_file_result="$1" fi } # end func_convert_file_check # func_convert_path_check FROM_PATHSEP TO_PATHSEP FROM_PATH TO_PATH # Verify that FROM_PATH (a path in $build format) was converted to $host # format in TO_PATH. Otherwise, emit an error message, but continue, resetting # func_to_host_file_result to a simplistic fallback value (see below). func_convert_path_check () { $opt_debug if test -z "$4" && test -n "$3"; then func_error "Could not determine the host path corresponding to" func_error " \`$3'" func_error "Continuing, but uninstalled executables may not work." # Fallback. This is a deliberately simplistic "conversion" and # should not be "improved". See libtool.info. if test "x$1" != "x$2"; then lt_replace_pathsep_chars="s|$1|$2|g" func_to_host_path_result=`echo "$3" | $SED -e "$lt_replace_pathsep_chars"` else func_to_host_path_result="$3" fi fi } # end func_convert_path_check # func_convert_path_front_back_pathsep FRONTPAT BACKPAT REPL ORIG # Modifies func_to_host_path_result by prepending REPL if ORIG matches FRONTPAT # and appending REPL if ORIG matches BACKPAT. func_convert_path_front_back_pathsep () { $opt_debug case $4 in $1 ) func_to_host_path_result="$3$func_to_host_path_result" ;; esac case $4 in $2 ) func_append func_to_host_path_result "$3" ;; esac } # end func_convert_path_front_back_pathsep ################################################## # $build to $host FILE NAME CONVERSION FUNCTIONS # ################################################## # invoked via `$to_host_file_cmd ARG' # # In each case, ARG is the path to be converted from $build to $host format. # Result will be available in $func_to_host_file_result. # func_to_host_file ARG # Converts the file name ARG from $build format to $host format. Return result # in func_to_host_file_result. func_to_host_file () { $opt_debug $to_host_file_cmd "$1" } # end func_to_host_file # func_to_tool_file ARG LAZY # converts the file name ARG from $build format to toolchain format. Return # result in func_to_tool_file_result. If the conversion in use is listed # in (the comma separated) LAZY, no conversion takes place. func_to_tool_file () { $opt_debug case ,$2, in *,"$to_tool_file_cmd",*) func_to_tool_file_result=$1 ;; *) $to_tool_file_cmd "$1" func_to_tool_file_result=$func_to_host_file_result ;; esac } # end func_to_tool_file # func_convert_file_noop ARG # Copy ARG to func_to_host_file_result. func_convert_file_noop () { func_to_host_file_result="$1" } # end func_convert_file_noop # func_convert_file_msys_to_w32 ARG # Convert file name ARG from (mingw) MSYS to (mingw) w32 format; automatic # conversion to w32 is not available inside the cwrapper. Returns result in # func_to_host_file_result. func_convert_file_msys_to_w32 () { $opt_debug func_to_host_file_result="$1" if test -n "$1"; then func_convert_core_msys_to_w32 "$1" func_to_host_file_result="$func_convert_core_msys_to_w32_result" fi func_convert_file_check "$1" "$func_to_host_file_result" } # end func_convert_file_msys_to_w32 # func_convert_file_cygwin_to_w32 ARG # Convert file name ARG from Cygwin to w32 format. Returns result in # func_to_host_file_result. func_convert_file_cygwin_to_w32 () { $opt_debug func_to_host_file_result="$1" if test -n "$1"; then # because $build is cygwin, we call "the" cygpath in $PATH; no need to use # LT_CYGPATH in this case. func_to_host_file_result=`cygpath -m "$1"` fi func_convert_file_check "$1" "$func_to_host_file_result" } # end func_convert_file_cygwin_to_w32 # func_convert_file_nix_to_w32 ARG # Convert file name ARG from *nix to w32 format. Requires a wine environment # and a working winepath. Returns result in func_to_host_file_result. func_convert_file_nix_to_w32 () { $opt_debug func_to_host_file_result="$1" if test -n "$1"; then func_convert_core_file_wine_to_w32 "$1" func_to_host_file_result="$func_convert_core_file_wine_to_w32_result" fi func_convert_file_check "$1" "$func_to_host_file_result" } # end func_convert_file_nix_to_w32 # func_convert_file_msys_to_cygwin ARG # Convert file name ARG from MSYS to Cygwin format. Requires LT_CYGPATH set. # Returns result in func_to_host_file_result. func_convert_file_msys_to_cygwin () { $opt_debug func_to_host_file_result="$1" if test -n "$1"; then func_convert_core_msys_to_w32 "$1" func_cygpath -u "$func_convert_core_msys_to_w32_result" func_to_host_file_result="$func_cygpath_result" fi func_convert_file_check "$1" "$func_to_host_file_result" } # end func_convert_file_msys_to_cygwin # func_convert_file_nix_to_cygwin ARG # Convert file name ARG from *nix to Cygwin format. Requires Cygwin installed # in a wine environment, working winepath, and LT_CYGPATH set. Returns result # in func_to_host_file_result. func_convert_file_nix_to_cygwin () { $opt_debug func_to_host_file_result="$1" if test -n "$1"; then # convert from *nix to w32, then use cygpath to convert from w32 to cygwin. func_convert_core_file_wine_to_w32 "$1" func_cygpath -u "$func_convert_core_file_wine_to_w32_result" func_to_host_file_result="$func_cygpath_result" fi func_convert_file_check "$1" "$func_to_host_file_result" } # end func_convert_file_nix_to_cygwin ############################################# # $build to $host PATH CONVERSION FUNCTIONS # ############################################# # invoked via `$to_host_path_cmd ARG' # # In each case, ARG is the path to be converted from $build to $host format. # The result will be available in $func_to_host_path_result. # # Path separators are also converted from $build format to $host format. If # ARG begins or ends with a path separator character, it is preserved (but # converted to $host format) on output. # # All path conversion functions are named using the following convention: # file name conversion function : func_convert_file_X_to_Y () # path conversion function : func_convert_path_X_to_Y () # where, for any given $build/$host combination the 'X_to_Y' value is the # same. If conversion functions are added for new $build/$host combinations, # the two new functions must follow this pattern, or func_init_to_host_path_cmd # will break. # func_init_to_host_path_cmd # Ensures that function "pointer" variable $to_host_path_cmd is set to the # appropriate value, based on the value of $to_host_file_cmd. to_host_path_cmd= func_init_to_host_path_cmd () { $opt_debug if test -z "$to_host_path_cmd"; then func_stripname 'func_convert_file_' '' "$to_host_file_cmd" to_host_path_cmd="func_convert_path_${func_stripname_result}" fi } # func_to_host_path ARG # Converts the path ARG from $build format to $host format. Return result # in func_to_host_path_result. func_to_host_path () { $opt_debug func_init_to_host_path_cmd $to_host_path_cmd "$1" } # end func_to_host_path # func_convert_path_noop ARG # Copy ARG to func_to_host_path_result. func_convert_path_noop () { func_to_host_path_result="$1" } # end func_convert_path_noop # func_convert_path_msys_to_w32 ARG # Convert path ARG from (mingw) MSYS to (mingw) w32 format; automatic # conversion to w32 is not available inside the cwrapper. Returns result in # func_to_host_path_result. func_convert_path_msys_to_w32 () { $opt_debug func_to_host_path_result="$1" if test -n "$1"; then # Remove leading and trailing path separator characters from ARG. MSYS # behavior is inconsistent here; cygpath turns them into '.;' and ';.'; # and winepath ignores them completely. func_stripname : : "$1" func_to_host_path_tmp1=$func_stripname_result func_convert_core_msys_to_w32 "$func_to_host_path_tmp1" func_to_host_path_result="$func_convert_core_msys_to_w32_result" func_convert_path_check : ";" \ "$func_to_host_path_tmp1" "$func_to_host_path_result" func_convert_path_front_back_pathsep ":*" "*:" ";" "$1" fi } # end func_convert_path_msys_to_w32 # func_convert_path_cygwin_to_w32 ARG # Convert path ARG from Cygwin to w32 format. Returns result in # func_to_host_file_result. func_convert_path_cygwin_to_w32 () { $opt_debug func_to_host_path_result="$1" if test -n "$1"; then # See func_convert_path_msys_to_w32: func_stripname : : "$1" func_to_host_path_tmp1=$func_stripname_result func_to_host_path_result=`cygpath -m -p "$func_to_host_path_tmp1"` func_convert_path_check : ";" \ "$func_to_host_path_tmp1" "$func_to_host_path_result" func_convert_path_front_back_pathsep ":*" "*:" ";" "$1" fi } # end func_convert_path_cygwin_to_w32 # func_convert_path_nix_to_w32 ARG # Convert path ARG from *nix to w32 format. Requires a wine environment and # a working winepath. Returns result in func_to_host_file_result. func_convert_path_nix_to_w32 () { $opt_debug func_to_host_path_result="$1" if test -n "$1"; then # See func_convert_path_msys_to_w32: func_stripname : : "$1" func_to_host_path_tmp1=$func_stripname_result func_convert_core_path_wine_to_w32 "$func_to_host_path_tmp1" func_to_host_path_result="$func_convert_core_path_wine_to_w32_result" func_convert_path_check : ";" \ "$func_to_host_path_tmp1" "$func_to_host_path_result" func_convert_path_front_back_pathsep ":*" "*:" ";" "$1" fi } # end func_convert_path_nix_to_w32 # func_convert_path_msys_to_cygwin ARG # Convert path ARG from MSYS to Cygwin format. Requires LT_CYGPATH set. # Returns result in func_to_host_file_result. func_convert_path_msys_to_cygwin () { $opt_debug func_to_host_path_result="$1" if test -n "$1"; then # See func_convert_path_msys_to_w32: func_stripname : : "$1" func_to_host_path_tmp1=$func_stripname_result func_convert_core_msys_to_w32 "$func_to_host_path_tmp1" func_cygpath -u -p "$func_convert_core_msys_to_w32_result" func_to_host_path_result="$func_cygpath_result" func_convert_path_check : : \ "$func_to_host_path_tmp1" "$func_to_host_path_result" func_convert_path_front_back_pathsep ":*" "*:" : "$1" fi } # end func_convert_path_msys_to_cygwin # func_convert_path_nix_to_cygwin ARG # Convert path ARG from *nix to Cygwin format. Requires Cygwin installed in a # a wine environment, working winepath, and LT_CYGPATH set. Returns result in # func_to_host_file_result. func_convert_path_nix_to_cygwin () { $opt_debug func_to_host_path_result="$1" if test -n "$1"; then # Remove leading and trailing path separator characters from # ARG. msys behavior is inconsistent here, cygpath turns them # into '.;' and ';.', and winepath ignores them completely. func_stripname : : "$1" func_to_host_path_tmp1=$func_stripname_result func_convert_core_path_wine_to_w32 "$func_to_host_path_tmp1" func_cygpath -u -p "$func_convert_core_path_wine_to_w32_result" func_to_host_path_result="$func_cygpath_result" func_convert_path_check : : \ "$func_to_host_path_tmp1" "$func_to_host_path_result" func_convert_path_front_back_pathsep ":*" "*:" : "$1" fi } # end func_convert_path_nix_to_cygwin # func_mode_compile arg... func_mode_compile () { $opt_debug # Get the compilation command and the source file. base_compile= srcfile="$nonopt" # always keep a non-empty value in "srcfile" suppress_opt=yes suppress_output= arg_mode=normal libobj= later= pie_flag= for arg do case $arg_mode in arg ) # do not "continue". Instead, add this to base_compile lastarg="$arg" arg_mode=normal ;; target ) libobj="$arg" arg_mode=normal continue ;; normal ) # Accept any command-line options. case $arg in -o) test -n "$libobj" && \ func_fatal_error "you cannot specify \`-o' more than once" arg_mode=target continue ;; -pie | -fpie | -fPIE) func_append pie_flag " $arg" continue ;; -shared | -static | -prefer-pic | -prefer-non-pic) func_append later " $arg" continue ;; -no-suppress) suppress_opt=no continue ;; -Xcompiler) arg_mode=arg # the next one goes into the "base_compile" arg list continue # The current "srcfile" will either be retained or ;; # replaced later. I would guess that would be a bug. -Wc,*) func_stripname '-Wc,' '' "$arg" args=$func_stripname_result lastarg= save_ifs="$IFS"; IFS=',' for arg in $args; do IFS="$save_ifs" func_append_quoted lastarg "$arg" done IFS="$save_ifs" func_stripname ' ' '' "$lastarg" lastarg=$func_stripname_result # Add the arguments to base_compile. func_append base_compile " $lastarg" continue ;; *) # Accept the current argument as the source file. # The previous "srcfile" becomes the current argument. # lastarg="$srcfile" srcfile="$arg" ;; esac # case $arg ;; esac # case $arg_mode # Aesthetically quote the previous argument. func_append_quoted base_compile "$lastarg" done # for arg case $arg_mode in arg) func_fatal_error "you must specify an argument for -Xcompile" ;; target) func_fatal_error "you must specify a target with \`-o'" ;; *) # Get the name of the library object. test -z "$libobj" && { func_basename "$srcfile" libobj="$func_basename_result" } ;; esac # Recognize several different file suffixes. # If the user specifies -o file.o, it is replaced with file.lo case $libobj in *.[cCFSifmso] | \ *.ada | *.adb | *.ads | *.asm | \ *.c++ | *.cc | *.ii | *.class | *.cpp | *.cxx | \ *.[fF][09]? | *.for | *.java | *.go | *.obj | *.sx | *.cu | *.cup) func_xform "$libobj" libobj=$func_xform_result ;; esac case $libobj in *.lo) func_lo2o "$libobj"; obj=$func_lo2o_result ;; *) func_fatal_error "cannot determine name of library object from \`$libobj'" ;; esac func_infer_tag $base_compile for arg in $later; do case $arg in -shared) test "$build_libtool_libs" != yes && \ func_fatal_configuration "can not build a shared library" build_old_libs=no continue ;; -static) build_libtool_libs=no build_old_libs=yes continue ;; -prefer-pic) pic_mode=yes continue ;; -prefer-non-pic) pic_mode=no continue ;; esac done func_quote_for_eval "$libobj" test "X$libobj" != "X$func_quote_for_eval_result" \ && $ECHO "X$libobj" | $GREP '[]~#^*{};<>?"'"'"' &()|`$[]' \ && func_warning "libobj name \`$libobj' may not contain shell special characters." func_dirname_and_basename "$obj" "/" "" objname="$func_basename_result" xdir="$func_dirname_result" lobj=${xdir}$objdir/$objname test -z "$base_compile" && \ func_fatal_help "you must specify a compilation command" # Delete any leftover library objects. if test "$build_old_libs" = yes; then removelist="$obj $lobj $libobj ${libobj}T" else removelist="$lobj $libobj ${libobj}T" fi # On Cygwin there's no "real" PIC flag so we must build both object types case $host_os in cygwin* | mingw* | pw32* | os2* | cegcc*) pic_mode=default ;; esac if test "$pic_mode" = no && test "$deplibs_check_method" != pass_all; then # non-PIC code in shared libraries is not supported pic_mode=default fi # Calculate the filename of the output object if compiler does # not support -o with -c if test "$compiler_c_o" = no; then output_obj=`$ECHO "$srcfile" | $SED 's%^.*/%%; s%\.[^.]*$%%'`.${objext} lockfile="$output_obj.lock" else output_obj= need_locks=no lockfile= fi # Lock this critical section if it is needed # We use this script file to make the link, it avoids creating a new file if test "$need_locks" = yes; then until $opt_dry_run || ln "$progpath" "$lockfile" 2>/dev/null; do func_echo "Waiting for $lockfile to be removed" sleep 2 done elif test "$need_locks" = warn; then if test -f "$lockfile"; then $ECHO "\ *** ERROR, $lockfile exists and contains: `cat $lockfile 2>/dev/null` This indicates that another process is trying to use the same temporary object file, and libtool could not work around it because your compiler does not support \`-c' and \`-o' together. If you repeat this compilation, it may succeed, by chance, but you had better avoid parallel builds (make -j) in this platform, or get a better compiler." $opt_dry_run || $RM $removelist exit $EXIT_FAILURE fi func_append removelist " $output_obj" $ECHO "$srcfile" > "$lockfile" fi $opt_dry_run || $RM $removelist func_append removelist " $lockfile" trap '$opt_dry_run || $RM $removelist; exit $EXIT_FAILURE' 1 2 15 func_to_tool_file "$srcfile" func_convert_file_msys_to_w32 srcfile=$func_to_tool_file_result func_quote_for_eval "$srcfile" qsrcfile=$func_quote_for_eval_result # Only build a PIC object if we are building libtool libraries. if test "$build_libtool_libs" = yes; then # Without this assignment, base_compile gets emptied. fbsd_hideous_sh_bug=$base_compile if test "$pic_mode" != no; then command="$base_compile $qsrcfile $pic_flag" else # Don't build PIC code command="$base_compile $qsrcfile" fi func_mkdir_p "$xdir$objdir" if test -z "$output_obj"; then # Place PIC objects in $objdir func_append command " -o $lobj" fi func_show_eval_locale "$command" \ 'test -n "$output_obj" && $RM $removelist; exit $EXIT_FAILURE' if test "$need_locks" = warn && test "X`cat $lockfile 2>/dev/null`" != "X$srcfile"; then $ECHO "\ *** ERROR, $lockfile contains: `cat $lockfile 2>/dev/null` but it should contain: $srcfile This indicates that another process is trying to use the same temporary object file, and libtool could not work around it because your compiler does not support \`-c' and \`-o' together. If you repeat this compilation, it may succeed, by chance, but you had better avoid parallel builds (make -j) in this platform, or get a better compiler." $opt_dry_run || $RM $removelist exit $EXIT_FAILURE fi # Just move the object if needed, then go on to compile the next one if test -n "$output_obj" && test "X$output_obj" != "X$lobj"; then func_show_eval '$MV "$output_obj" "$lobj"' \ 'error=$?; $opt_dry_run || $RM $removelist; exit $error' fi # Allow error messages only from the first compilation. if test "$suppress_opt" = yes; then suppress_output=' >/dev/null 2>&1' fi fi # Only build a position-dependent object if we build old libraries. if test "$build_old_libs" = yes; then if test "$pic_mode" != yes; then # Don't build PIC code command="$base_compile $qsrcfile$pie_flag" else command="$base_compile $qsrcfile $pic_flag" fi if test "$compiler_c_o" = yes; then func_append command " -o $obj" fi # Suppress compiler output if we already did a PIC compilation. func_append command "$suppress_output" func_show_eval_locale "$command" \ '$opt_dry_run || $RM $removelist; exit $EXIT_FAILURE' if test "$need_locks" = warn && test "X`cat $lockfile 2>/dev/null`" != "X$srcfile"; then $ECHO "\ *** ERROR, $lockfile contains: `cat $lockfile 2>/dev/null` but it should contain: $srcfile This indicates that another process is trying to use the same temporary object file, and libtool could not work around it because your compiler does not support \`-c' and \`-o' together. If you repeat this compilation, it may succeed, by chance, but you had better avoid parallel builds (make -j) in this platform, or get a better compiler." $opt_dry_run || $RM $removelist exit $EXIT_FAILURE fi # Just move the object if needed if test -n "$output_obj" && test "X$output_obj" != "X$obj"; then func_show_eval '$MV "$output_obj" "$obj"' \ 'error=$?; $opt_dry_run || $RM $removelist; exit $error' fi fi $opt_dry_run || { func_write_libtool_object "$libobj" "$objdir/$objname" "$objname" # Unlock the critical section if it was locked if test "$need_locks" != no; then removelist=$lockfile $RM "$lockfile" fi } exit $EXIT_SUCCESS } $opt_help || { test "$opt_mode" = compile && func_mode_compile ${1+"$@"} } func_mode_help () { # We need to display help for each of the modes. case $opt_mode in "") # Generic help is extracted from the usage comments # at the start of this file. func_help ;; clean) $ECHO \ "Usage: $progname [OPTION]... --mode=clean RM [RM-OPTION]... FILE... Remove files from the build directory. RM is the name of the program to use to delete files associated with each FILE (typically \`/bin/rm'). RM-OPTIONS are options (such as \`-f') to be passed to RM. If FILE is a libtool library, object or program, all the files associated with it are deleted. Otherwise, only FILE itself is deleted using RM." ;; compile) $ECHO \ "Usage: $progname [OPTION]... --mode=compile COMPILE-COMMAND... SOURCEFILE Compile a source file into a libtool library object. This mode accepts the following additional options: -o OUTPUT-FILE set the output file name to OUTPUT-FILE -no-suppress do not suppress compiler output for multiple passes -prefer-pic try to build PIC objects only -prefer-non-pic try to build non-PIC objects only -shared do not build a \`.o' file suitable for static linking -static only build a \`.o' file suitable for static linking -Wc,FLAG pass FLAG directly to the compiler COMPILE-COMMAND is a command to be used in creating a \`standard' object file from the given SOURCEFILE. The output file name is determined by removing the directory component from SOURCEFILE, then substituting the C source code suffix \`.c' with the library object suffix, \`.lo'." ;; execute) $ECHO \ "Usage: $progname [OPTION]... --mode=execute COMMAND [ARGS]... Automatically set library path, then run a program. This mode accepts the following additional options: -dlopen FILE add the directory containing FILE to the library path This mode sets the library path environment variable according to \`-dlopen' flags. If any of the ARGS are libtool executable wrappers, then they are translated into their corresponding uninstalled binary, and any of their required library directories are added to the library path. Then, COMMAND is executed, with ARGS as arguments." ;; finish) $ECHO \ "Usage: $progname [OPTION]... --mode=finish [LIBDIR]... Complete the installation of libtool libraries. Each LIBDIR is a directory that contains libtool libraries. The commands that this mode executes may require superuser privileges. Use the \`--dry-run' option if you just want to see what would be executed." ;; install) $ECHO \ "Usage: $progname [OPTION]... --mode=install INSTALL-COMMAND... Install executables or libraries. INSTALL-COMMAND is the installation command. The first component should be either the \`install' or \`cp' program. The following components of INSTALL-COMMAND are treated specially: -inst-prefix-dir PREFIX-DIR Use PREFIX-DIR as a staging area for installation The rest of the components are interpreted as arguments to that command (only BSD-compatible install options are recognized)." ;; link) $ECHO \ "Usage: $progname [OPTION]... --mode=link LINK-COMMAND... Link object files or libraries together to form another library, or to create an executable program. LINK-COMMAND is a command using the C compiler that you would use to create a program from several object files. The following components of LINK-COMMAND are treated specially: -all-static do not do any dynamic linking at all -avoid-version do not add a version suffix if possible -bindir BINDIR specify path to binaries directory (for systems where libraries must be found in the PATH setting at runtime) -dlopen FILE \`-dlpreopen' FILE if it cannot be dlopened at runtime -dlpreopen FILE link in FILE and add its symbols to lt_preloaded_symbols -export-dynamic allow symbols from OUTPUT-FILE to be resolved with dlsym(3) -export-symbols SYMFILE try to export only the symbols listed in SYMFILE -export-symbols-regex REGEX try to export only the symbols matching REGEX -LLIBDIR search LIBDIR for required installed libraries -lNAME OUTPUT-FILE requires the installed library libNAME -module build a library that can dlopened -no-fast-install disable the fast-install mode -no-install link a not-installable executable -no-undefined declare that a library does not refer to external symbols -o OUTPUT-FILE create OUTPUT-FILE from the specified objects -objectlist FILE Use a list of object files found in FILE to specify objects -precious-files-regex REGEX don't remove output files matching REGEX -release RELEASE specify package release information -rpath LIBDIR the created library will eventually be installed in LIBDIR -R[ ]LIBDIR add LIBDIR to the runtime path of programs and libraries -shared only do dynamic linking of libtool libraries -shrext SUFFIX override the standard shared library file extension -static do not do any dynamic linking of uninstalled libtool libraries -static-libtool-libs do not do any dynamic linking of libtool libraries -version-info CURRENT[:REVISION[:AGE]] specify library version info [each variable defaults to 0] -weak LIBNAME declare that the target provides the LIBNAME interface -Wc,FLAG -Xcompiler FLAG pass linker-specific FLAG directly to the compiler -Wl,FLAG -Xlinker FLAG pass linker-specific FLAG directly to the linker -XCClinker FLAG pass link-specific FLAG to the compiler driver (CC) All other options (arguments beginning with \`-') are ignored. Every other argument is treated as a filename. Files ending in \`.la' are treated as uninstalled libtool libraries, other files are standard or library object files. If the OUTPUT-FILE ends in \`.la', then a libtool library is created, only library objects (\`.lo' files) may be specified, and \`-rpath' is required, except when creating a convenience library. If OUTPUT-FILE ends in \`.a' or \`.lib', then a standard library is created using \`ar' and \`ranlib', or on Windows using \`lib'. If OUTPUT-FILE ends in \`.lo' or \`.${objext}', then a reloadable object file is created, otherwise an executable program is created." ;; uninstall) $ECHO \ "Usage: $progname [OPTION]... --mode=uninstall RM [RM-OPTION]... FILE... Remove libraries from an installation directory. RM is the name of the program to use to delete files associated with each FILE (typically \`/bin/rm'). RM-OPTIONS are options (such as \`-f') to be passed to RM. If FILE is a libtool library, all the files associated with it are deleted. Otherwise, only FILE itself is deleted using RM." ;; *) func_fatal_help "invalid operation mode \`$opt_mode'" ;; esac echo $ECHO "Try \`$progname --help' for more information about other modes." } # Now that we've collected a possible --mode arg, show help if necessary if $opt_help; then if test "$opt_help" = :; then func_mode_help else { func_help noexit for opt_mode in compile link execute install finish uninstall clean; do func_mode_help done } | sed -n '1p; 2,$s/^Usage:/ or: /p' { func_help noexit for opt_mode in compile link execute install finish uninstall clean; do echo func_mode_help done } | sed '1d /^When reporting/,/^Report/{ H d } $x /information about other modes/d /more detailed .*MODE/d s/^Usage:.*--mode=\([^ ]*\) .*/Description of \1 mode:/' fi exit $? fi # func_mode_execute arg... func_mode_execute () { $opt_debug # The first argument is the command name. cmd="$nonopt" test -z "$cmd" && \ func_fatal_help "you must specify a COMMAND" # Handle -dlopen flags immediately. for file in $opt_dlopen; do test -f "$file" \ || func_fatal_help "\`$file' is not a file" dir= case $file in *.la) func_resolve_sysroot "$file" file=$func_resolve_sysroot_result # Check to see that this really is a libtool archive. func_lalib_unsafe_p "$file" \ || func_fatal_help "\`$lib' is not a valid libtool archive" # Read the libtool library. dlname= library_names= func_source "$file" # Skip this library if it cannot be dlopened. if test -z "$dlname"; then # Warn if it was a shared library. test -n "$library_names" && \ func_warning "\`$file' was not linked with \`-export-dynamic'" continue fi func_dirname "$file" "" "." dir="$func_dirname_result" if test -f "$dir/$objdir/$dlname"; then func_append dir "/$objdir" else if test ! -f "$dir/$dlname"; then func_fatal_error "cannot find \`$dlname' in \`$dir' or \`$dir/$objdir'" fi fi ;; *.lo) # Just add the directory containing the .lo file. func_dirname "$file" "" "." dir="$func_dirname_result" ;; *) func_warning "\`-dlopen' is ignored for non-libtool libraries and objects" continue ;; esac # Get the absolute pathname. absdir=`cd "$dir" && pwd` test -n "$absdir" && dir="$absdir" # Now add the directory to shlibpath_var. if eval "test -z \"\$$shlibpath_var\""; then eval "$shlibpath_var=\"\$dir\"" else eval "$shlibpath_var=\"\$dir:\$$shlibpath_var\"" fi done # This variable tells wrapper scripts just to set shlibpath_var # rather than running their programs. libtool_execute_magic="$magic" # Check if any of the arguments is a wrapper script. args= for file do case $file in -* | *.la | *.lo ) ;; *) # Do a test to see if this is really a libtool program. if func_ltwrapper_script_p "$file"; then func_source "$file" # Transform arg to wrapped name. file="$progdir/$program" elif func_ltwrapper_executable_p "$file"; then func_ltwrapper_scriptname "$file" func_source "$func_ltwrapper_scriptname_result" # Transform arg to wrapped name. file="$progdir/$program" fi ;; esac # Quote arguments (to preserve shell metacharacters). func_append_quoted args "$file" done if test "X$opt_dry_run" = Xfalse; then if test -n "$shlibpath_var"; then # Export the shlibpath_var. eval "export $shlibpath_var" fi # Restore saved environment variables for lt_var in LANG LANGUAGE LC_ALL LC_CTYPE LC_COLLATE LC_MESSAGES do eval "if test \"\${save_$lt_var+set}\" = set; then $lt_var=\$save_$lt_var; export $lt_var else $lt_unset $lt_var fi" done # Now prepare to actually exec the command. exec_cmd="\$cmd$args" else # Display what would be done. if test -n "$shlibpath_var"; then eval "\$ECHO \"\$shlibpath_var=\$$shlibpath_var\"" echo "export $shlibpath_var" fi $ECHO "$cmd$args" exit $EXIT_SUCCESS fi } test "$opt_mode" = execute && func_mode_execute ${1+"$@"} # func_mode_finish arg... func_mode_finish () { $opt_debug libs= libdirs= admincmds= for opt in "$nonopt" ${1+"$@"} do if test -d "$opt"; then func_append libdirs " $opt" elif test -f "$opt"; then if func_lalib_unsafe_p "$opt"; then func_append libs " $opt" else func_warning "\`$opt' is not a valid libtool archive" fi else func_fatal_error "invalid argument \`$opt'" fi done if test -n "$libs"; then if test -n "$lt_sysroot"; then sysroot_regex=`$ECHO "$lt_sysroot" | $SED "$sed_make_literal_regex"` sysroot_cmd="s/\([ ']\)$sysroot_regex/\1/g;" else sysroot_cmd= fi # Remove sysroot references if $opt_dry_run; then for lib in $libs; do echo "removing references to $lt_sysroot and \`=' prefixes from $lib" done else tmpdir=`func_mktempdir` for lib in $libs; do sed -e "${sysroot_cmd} s/\([ ']-[LR]\)=/\1/g; s/\([ ']\)=/\1/g" $lib \ > $tmpdir/tmp-la mv -f $tmpdir/tmp-la $lib done ${RM}r "$tmpdir" fi fi if test -n "$finish_cmds$finish_eval" && test -n "$libdirs"; then for libdir in $libdirs; do if test -n "$finish_cmds"; then # Do each command in the finish commands. func_execute_cmds "$finish_cmds" 'admincmds="$admincmds '"$cmd"'"' fi if test -n "$finish_eval"; then # Do the single finish_eval. eval cmds=\"$finish_eval\" $opt_dry_run || eval "$cmds" || func_append admincmds " $cmds" fi done fi # Exit here if they wanted silent mode. $opt_silent && exit $EXIT_SUCCESS if test -n "$finish_cmds$finish_eval" && test -n "$libdirs"; then echo "----------------------------------------------------------------------" echo "Libraries have been installed in:" for libdir in $libdirs; do $ECHO " $libdir" done echo echo "If you ever happen to want to link against installed libraries" echo "in a given directory, LIBDIR, you must either use libtool, and" echo "specify the full pathname of the library, or use the \`-LLIBDIR'" echo "flag during linking and do at least one of the following:" if test -n "$shlibpath_var"; then echo " - add LIBDIR to the \`$shlibpath_var' environment variable" echo " during execution" fi if test -n "$runpath_var"; then echo " - add LIBDIR to the \`$runpath_var' environment variable" echo " during linking" fi if test -n "$hardcode_libdir_flag_spec"; then libdir=LIBDIR eval flag=\"$hardcode_libdir_flag_spec\" $ECHO " - use the \`$flag' linker flag" fi if test -n "$admincmds"; then $ECHO " - have your system administrator run these commands:$admincmds" fi if test -f /etc/ld.so.conf; then echo " - have your system administrator add LIBDIR to \`/etc/ld.so.conf'" fi echo echo "See any operating system documentation about shared libraries for" case $host in solaris2.[6789]|solaris2.1[0-9]) echo "more information, such as the ld(1), crle(1) and ld.so(8) manual" echo "pages." ;; *) echo "more information, such as the ld(1) and ld.so(8) manual pages." ;; esac echo "----------------------------------------------------------------------" fi exit $EXIT_SUCCESS } test "$opt_mode" = finish && func_mode_finish ${1+"$@"} # func_mode_install arg... func_mode_install () { $opt_debug # There may be an optional sh(1) argument at the beginning of # install_prog (especially on Windows NT). if test "$nonopt" = "$SHELL" || test "$nonopt" = /bin/sh || # Allow the use of GNU shtool's install command. case $nonopt in *shtool*) :;; *) false;; esac; then # Aesthetically quote it. func_quote_for_eval "$nonopt" install_prog="$func_quote_for_eval_result " arg=$1 shift else install_prog= arg=$nonopt fi # The real first argument should be the name of the installation program. # Aesthetically quote it. func_quote_for_eval "$arg" func_append install_prog "$func_quote_for_eval_result" install_shared_prog=$install_prog case " $install_prog " in *[\\\ /]cp\ *) install_cp=: ;; *) install_cp=false ;; esac # We need to accept at least all the BSD install flags. dest= files= opts= prev= install_type= isdir=no stripme= no_mode=: for arg do arg2= if test -n "$dest"; then func_append files " $dest" dest=$arg continue fi case $arg in -d) isdir=yes ;; -f) if $install_cp; then :; else prev=$arg fi ;; -g | -m | -o) prev=$arg ;; -s) stripme=" -s" continue ;; -*) ;; *) # If the previous option needed an argument, then skip it. if test -n "$prev"; then if test "x$prev" = x-m && test -n "$install_override_mode"; then arg2=$install_override_mode no_mode=false fi prev= else dest=$arg continue fi ;; esac # Aesthetically quote the argument. func_quote_for_eval "$arg" func_append install_prog " $func_quote_for_eval_result" if test -n "$arg2"; then func_quote_for_eval "$arg2" fi func_append install_shared_prog " $func_quote_for_eval_result" done test -z "$install_prog" && \ func_fatal_help "you must specify an install program" test -n "$prev" && \ func_fatal_help "the \`$prev' option requires an argument" if test -n "$install_override_mode" && $no_mode; then if $install_cp; then :; else func_quote_for_eval "$install_override_mode" func_append install_shared_prog " -m $func_quote_for_eval_result" fi fi if test -z "$files"; then if test -z "$dest"; then func_fatal_help "no file or destination specified" else func_fatal_help "you must specify a destination" fi fi # Strip any trailing slash from the destination. func_stripname '' '/' "$dest" dest=$func_stripname_result # Check to see that the destination is a directory. test -d "$dest" && isdir=yes if test "$isdir" = yes; then destdir="$dest" destname= else func_dirname_and_basename "$dest" "" "." destdir="$func_dirname_result" destname="$func_basename_result" # Not a directory, so check to see that there is only one file specified. set dummy $files; shift test "$#" -gt 1 && \ func_fatal_help "\`$dest' is not a directory" fi case $destdir in [\\/]* | [A-Za-z]:[\\/]*) ;; *) for file in $files; do case $file in *.lo) ;; *) func_fatal_help "\`$destdir' must be an absolute directory name" ;; esac done ;; esac # This variable tells wrapper scripts just to set variables rather # than running their programs. libtool_install_magic="$magic" staticlibs= future_libdirs= current_libdirs= for file in $files; do # Do each installation. case $file in *.$libext) # Do the static libraries later. func_append staticlibs " $file" ;; *.la) func_resolve_sysroot "$file" file=$func_resolve_sysroot_result # Check to see that this really is a libtool archive. func_lalib_unsafe_p "$file" \ || func_fatal_help "\`$file' is not a valid libtool archive" library_names= old_library= relink_command= func_source "$file" # Add the libdir to current_libdirs if it is the destination. if test "X$destdir" = "X$libdir"; then case "$current_libdirs " in *" $libdir "*) ;; *) func_append current_libdirs " $libdir" ;; esac else # Note the libdir as a future libdir. case "$future_libdirs " in *" $libdir "*) ;; *) func_append future_libdirs " $libdir" ;; esac fi func_dirname "$file" "/" "" dir="$func_dirname_result" func_append dir "$objdir" if test -n "$relink_command"; then # Determine the prefix the user has applied to our future dir. inst_prefix_dir=`$ECHO "$destdir" | $SED -e "s%$libdir\$%%"` # Don't allow the user to place us outside of our expected # location b/c this prevents finding dependent libraries that # are installed to the same prefix. # At present, this check doesn't affect windows .dll's that # are installed into $libdir/../bin (currently, that works fine) # but it's something to keep an eye on. test "$inst_prefix_dir" = "$destdir" && \ func_fatal_error "error: cannot install \`$file' to a directory not ending in $libdir" if test -n "$inst_prefix_dir"; then # Stick the inst_prefix_dir data into the link command. relink_command=`$ECHO "$relink_command" | $SED "s%@inst_prefix_dir@%-inst-prefix-dir $inst_prefix_dir%"` else relink_command=`$ECHO "$relink_command" | $SED "s%@inst_prefix_dir@%%"` fi func_warning "relinking \`$file'" func_show_eval "$relink_command" \ 'func_fatal_error "error: relink \`$file'\'' with the above command before installing it"' fi # See the names of the shared library. set dummy $library_names; shift if test -n "$1"; then realname="$1" shift srcname="$realname" test -n "$relink_command" && srcname="$realname"T # Install the shared library and build the symlinks. func_show_eval "$install_shared_prog $dir/$srcname $destdir/$realname" \ 'exit $?' tstripme="$stripme" case $host_os in cygwin* | mingw* | pw32* | cegcc*) case $realname in *.dll.a) tstripme="" ;; esac ;; esac if test -n "$tstripme" && test -n "$striplib"; then func_show_eval "$striplib $destdir/$realname" 'exit $?' fi if test "$#" -gt 0; then # Delete the old symlinks, and create new ones. # Try `ln -sf' first, because the `ln' binary might depend on # the symlink we replace! Solaris /bin/ln does not understand -f, # so we also need to try rm && ln -s. for linkname do test "$linkname" != "$realname" \ && func_show_eval "(cd $destdir && { $LN_S -f $realname $linkname || { $RM $linkname && $LN_S $realname $linkname; }; })" done fi # Do each command in the postinstall commands. lib="$destdir/$realname" func_execute_cmds "$postinstall_cmds" 'exit $?' fi # Install the pseudo-library for information purposes. func_basename "$file" name="$func_basename_result" instname="$dir/$name"i func_show_eval "$install_prog $instname $destdir/$name" 'exit $?' # Maybe install the static library, too. test -n "$old_library" && func_append staticlibs " $dir/$old_library" ;; *.lo) # Install (i.e. copy) a libtool object. # Figure out destination file name, if it wasn't already specified. if test -n "$destname"; then destfile="$destdir/$destname" else func_basename "$file" destfile="$func_basename_result" destfile="$destdir/$destfile" fi # Deduce the name of the destination old-style object file. case $destfile in *.lo) func_lo2o "$destfile" staticdest=$func_lo2o_result ;; *.$objext) staticdest="$destfile" destfile= ;; *) func_fatal_help "cannot copy a libtool object to \`$destfile'" ;; esac # Install the libtool object if requested. test -n "$destfile" && \ func_show_eval "$install_prog $file $destfile" 'exit $?' # Install the old object if enabled. if test "$build_old_libs" = yes; then # Deduce the name of the old-style object file. func_lo2o "$file" staticobj=$func_lo2o_result func_show_eval "$install_prog \$staticobj \$staticdest" 'exit $?' fi exit $EXIT_SUCCESS ;; *) # Figure out destination file name, if it wasn't already specified. if test -n "$destname"; then destfile="$destdir/$destname" else func_basename "$file" destfile="$func_basename_result" destfile="$destdir/$destfile" fi # If the file is missing, and there is a .exe on the end, strip it # because it is most likely a libtool script we actually want to # install stripped_ext="" case $file in *.exe) if test ! -f "$file"; then func_stripname '' '.exe' "$file" file=$func_stripname_result stripped_ext=".exe" fi ;; esac # Do a test to see if this is really a libtool program. case $host in *cygwin* | *mingw*) if func_ltwrapper_executable_p "$file"; then func_ltwrapper_scriptname "$file" wrapper=$func_ltwrapper_scriptname_result else func_stripname '' '.exe' "$file" wrapper=$func_stripname_result fi ;; *) wrapper=$file ;; esac if func_ltwrapper_script_p "$wrapper"; then notinst_deplibs= relink_command= func_source "$wrapper" # Check the variables that should have been set. test -z "$generated_by_libtool_version" && \ func_fatal_error "invalid libtool wrapper script \`$wrapper'" finalize=yes for lib in $notinst_deplibs; do # Check to see that each library is installed. libdir= if test -f "$lib"; then func_source "$lib" fi libfile="$libdir/"`$ECHO "$lib" | $SED 's%^.*/%%g'` ### testsuite: skip nested quoting test if test -n "$libdir" && test ! -f "$libfile"; then func_warning "\`$lib' has not been installed in \`$libdir'" finalize=no fi done relink_command= func_source "$wrapper" outputname= if test "$fast_install" = no && test -n "$relink_command"; then $opt_dry_run || { if test "$finalize" = yes; then tmpdir=`func_mktempdir` func_basename "$file$stripped_ext" file="$func_basename_result" outputname="$tmpdir/$file" # Replace the output file specification. relink_command=`$ECHO "$relink_command" | $SED 's%@OUTPUT@%'"$outputname"'%g'` $opt_silent || { func_quote_for_expand "$relink_command" eval "func_echo $func_quote_for_expand_result" } if eval "$relink_command"; then : else func_error "error: relink \`$file' with the above command before installing it" $opt_dry_run || ${RM}r "$tmpdir" continue fi file="$outputname" else func_warning "cannot relink \`$file'" fi } else # Install the binary that we compiled earlier. file=`$ECHO "$file$stripped_ext" | $SED "s%\([^/]*\)$%$objdir/\1%"` fi fi # remove .exe since cygwin /usr/bin/install will append another # one anyway case $install_prog,$host in */usr/bin/install*,*cygwin*) case $file:$destfile in *.exe:*.exe) # this is ok ;; *.exe:*) destfile=$destfile.exe ;; *:*.exe) func_stripname '' '.exe' "$destfile" destfile=$func_stripname_result ;; esac ;; esac func_show_eval "$install_prog\$stripme \$file \$destfile" 'exit $?' $opt_dry_run || if test -n "$outputname"; then ${RM}r "$tmpdir" fi ;; esac done for file in $staticlibs; do func_basename "$file" name="$func_basename_result" # Set up the ranlib parameters. oldlib="$destdir/$name" func_to_tool_file "$oldlib" func_convert_file_msys_to_w32 tool_oldlib=$func_to_tool_file_result func_show_eval "$install_prog \$file \$oldlib" 'exit $?' if test -n "$stripme" && test -n "$old_striplib"; then func_show_eval "$old_striplib $tool_oldlib" 'exit $?' fi # Do each command in the postinstall commands. func_execute_cmds "$old_postinstall_cmds" 'exit $?' done test -n "$future_libdirs" && \ func_warning "remember to run \`$progname --finish$future_libdirs'" if test -n "$current_libdirs"; then # Maybe just do a dry run. $opt_dry_run && current_libdirs=" -n$current_libdirs" exec_cmd='$SHELL $progpath $preserve_args --finish$current_libdirs' else exit $EXIT_SUCCESS fi } test "$opt_mode" = install && func_mode_install ${1+"$@"} # func_generate_dlsyms outputname originator pic_p # Extract symbols from dlprefiles and create ${outputname}S.o with # a dlpreopen symbol table. func_generate_dlsyms () { $opt_debug my_outputname="$1" my_originator="$2" my_pic_p="${3-no}" my_prefix=`$ECHO "$my_originator" | sed 's%[^a-zA-Z0-9]%_%g'` my_dlsyms= if test -n "$dlfiles$dlprefiles" || test "$dlself" != no; then if test -n "$NM" && test -n "$global_symbol_pipe"; then my_dlsyms="${my_outputname}S.c" else func_error "not configured to extract global symbols from dlpreopened files" fi fi if test -n "$my_dlsyms"; then case $my_dlsyms in "") ;; *.c) # Discover the nlist of each of the dlfiles. nlist="$output_objdir/${my_outputname}.nm" func_show_eval "$RM $nlist ${nlist}S ${nlist}T" # Parse the name list into a source file. func_verbose "creating $output_objdir/$my_dlsyms" $opt_dry_run || $ECHO > "$output_objdir/$my_dlsyms" "\ /* $my_dlsyms - symbol resolution table for \`$my_outputname' dlsym emulation. */ /* Generated by $PROGRAM (GNU $PACKAGE$TIMESTAMP) $VERSION */ #ifdef __cplusplus extern \"C\" { #endif #if defined(__GNUC__) && (((__GNUC__ == 4) && (__GNUC_MINOR__ >= 4)) || (__GNUC__ > 4)) #pragma GCC diagnostic ignored \"-Wstrict-prototypes\" #endif /* Keep this code in sync between libtool.m4, ltmain, lt_system.h, and tests. */ #if defined(_WIN32) || defined(__CYGWIN__) || defined(_WIN32_WCE) /* DATA imports from DLLs on WIN32 con't be const, because runtime relocations are performed -- see ld's documentation on pseudo-relocs. */ # define LT_DLSYM_CONST #elif defined(__osf__) /* This system does not cope well with relocations in const data. */ # define LT_DLSYM_CONST #else # define LT_DLSYM_CONST const #endif /* External symbol declarations for the compiler. */\ " if test "$dlself" = yes; then func_verbose "generating symbol list for \`$output'" $opt_dry_run || echo ': @PROGRAM@ ' > "$nlist" # Add our own program objects to the symbol list. progfiles=`$ECHO "$objs$old_deplibs" | $SP2NL | $SED "$lo2o" | $NL2SP` for progfile in $progfiles; do func_to_tool_file "$progfile" func_convert_file_msys_to_w32 func_verbose "extracting global C symbols from \`$func_to_tool_file_result'" $opt_dry_run || eval "$NM $func_to_tool_file_result | $global_symbol_pipe >> '$nlist'" done if test -n "$exclude_expsyms"; then $opt_dry_run || { eval '$EGREP -v " ($exclude_expsyms)$" "$nlist" > "$nlist"T' eval '$MV "$nlist"T "$nlist"' } fi if test -n "$export_symbols_regex"; then $opt_dry_run || { eval '$EGREP -e "$export_symbols_regex" "$nlist" > "$nlist"T' eval '$MV "$nlist"T "$nlist"' } fi # Prepare the list of exported symbols if test -z "$export_symbols"; then export_symbols="$output_objdir/$outputname.exp" $opt_dry_run || { $RM $export_symbols eval "${SED} -n -e '/^: @PROGRAM@ $/d' -e 's/^.* \(.*\)$/\1/p' "'< "$nlist" > "$export_symbols"' case $host in *cygwin* | *mingw* | *cegcc* ) eval "echo EXPORTS "'> "$output_objdir/$outputname.def"' eval 'cat "$export_symbols" >> "$output_objdir/$outputname.def"' ;; esac } else $opt_dry_run || { eval "${SED} -e 's/\([].[*^$]\)/\\\\\1/g' -e 's/^/ /' -e 's/$/$/'"' < "$export_symbols" > "$output_objdir/$outputname.exp"' eval '$GREP -f "$output_objdir/$outputname.exp" < "$nlist" > "$nlist"T' eval '$MV "$nlist"T "$nlist"' case $host in *cygwin* | *mingw* | *cegcc* ) eval "echo EXPORTS "'> "$output_objdir/$outputname.def"' eval 'cat "$nlist" >> "$output_objdir/$outputname.def"' ;; esac } fi fi for dlprefile in $dlprefiles; do func_verbose "extracting global C symbols from \`$dlprefile'" func_basename "$dlprefile" name="$func_basename_result" case $host in *cygwin* | *mingw* | *cegcc* ) # if an import library, we need to obtain dlname if func_win32_import_lib_p "$dlprefile"; then func_tr_sh "$dlprefile" eval "curr_lafile=\$libfile_$func_tr_sh_result" dlprefile_dlbasename="" if test -n "$curr_lafile" && func_lalib_p "$curr_lafile"; then # Use subshell, to avoid clobbering current variable values dlprefile_dlname=`source "$curr_lafile" && echo "$dlname"` if test -n "$dlprefile_dlname" ; then func_basename "$dlprefile_dlname" dlprefile_dlbasename="$func_basename_result" else # no lafile. user explicitly requested -dlpreopen . $sharedlib_from_linklib_cmd "$dlprefile" dlprefile_dlbasename=$sharedlib_from_linklib_result fi fi $opt_dry_run || { if test -n "$dlprefile_dlbasename" ; then eval '$ECHO ": $dlprefile_dlbasename" >> "$nlist"' else func_warning "Could not compute DLL name from $name" eval '$ECHO ": $name " >> "$nlist"' fi func_to_tool_file "$dlprefile" func_convert_file_msys_to_w32 eval "$NM \"$func_to_tool_file_result\" 2>/dev/null | $global_symbol_pipe | $SED -e '/I __imp/d' -e 's/I __nm_/D /;s/_nm__//' >> '$nlist'" } else # not an import lib $opt_dry_run || { eval '$ECHO ": $name " >> "$nlist"' func_to_tool_file "$dlprefile" func_convert_file_msys_to_w32 eval "$NM \"$func_to_tool_file_result\" 2>/dev/null | $global_symbol_pipe >> '$nlist'" } fi ;; *) $opt_dry_run || { eval '$ECHO ": $name " >> "$nlist"' func_to_tool_file "$dlprefile" func_convert_file_msys_to_w32 eval "$NM \"$func_to_tool_file_result\" 2>/dev/null | $global_symbol_pipe >> '$nlist'" } ;; esac done $opt_dry_run || { # Make sure we have at least an empty file. test -f "$nlist" || : > "$nlist" if test -n "$exclude_expsyms"; then $EGREP -v " ($exclude_expsyms)$" "$nlist" > "$nlist"T $MV "$nlist"T "$nlist" fi # Try sorting and uniquifying the output. if $GREP -v "^: " < "$nlist" | if sort -k 3 /dev/null 2>&1; then sort -k 3 else sort +2 fi | uniq > "$nlist"S; then : else $GREP -v "^: " < "$nlist" > "$nlist"S fi if test -f "$nlist"S; then eval "$global_symbol_to_cdecl"' < "$nlist"S >> "$output_objdir/$my_dlsyms"' else echo '/* NONE */' >> "$output_objdir/$my_dlsyms" fi echo >> "$output_objdir/$my_dlsyms" "\ /* The mapping between symbol names and symbols. */ typedef struct { const char *name; void *address; } lt_dlsymlist; extern LT_DLSYM_CONST lt_dlsymlist lt_${my_prefix}_LTX_preloaded_symbols[]; LT_DLSYM_CONST lt_dlsymlist lt_${my_prefix}_LTX_preloaded_symbols[] = {\ { \"$my_originator\", (void *) 0 }," case $need_lib_prefix in no) eval "$global_symbol_to_c_name_address" < "$nlist" >> "$output_objdir/$my_dlsyms" ;; *) eval "$global_symbol_to_c_name_address_lib_prefix" < "$nlist" >> "$output_objdir/$my_dlsyms" ;; esac echo >> "$output_objdir/$my_dlsyms" "\ {0, (void *) 0} }; /* This works around a problem in FreeBSD linker */ #ifdef FREEBSD_WORKAROUND static const void *lt_preloaded_setup() { return lt_${my_prefix}_LTX_preloaded_symbols; } #endif #ifdef __cplusplus } #endif\ " } # !$opt_dry_run pic_flag_for_symtable= case "$compile_command " in *" -static "*) ;; *) case $host in # compiling the symbol table file with pic_flag works around # a FreeBSD bug that causes programs to crash when -lm is # linked before any other PIC object. But we must not use # pic_flag when linking with -static. The problem exists in # FreeBSD 2.2.6 and is fixed in FreeBSD 3.1. *-*-freebsd2.*|*-*-freebsd3.0*|*-*-freebsdelf3.0*) pic_flag_for_symtable=" $pic_flag -DFREEBSD_WORKAROUND" ;; *-*-hpux*) pic_flag_for_symtable=" $pic_flag" ;; *) if test "X$my_pic_p" != Xno; then pic_flag_for_symtable=" $pic_flag" fi ;; esac ;; esac symtab_cflags= for arg in $LTCFLAGS; do case $arg in -pie | -fpie | -fPIE) ;; *) func_append symtab_cflags " $arg" ;; esac done # Now compile the dynamic symbol file. func_show_eval '(cd $output_objdir && $LTCC$symtab_cflags -c$no_builtin_flag$pic_flag_for_symtable "$my_dlsyms")' 'exit $?' # Clean up the generated files. func_show_eval '$RM "$output_objdir/$my_dlsyms" "$nlist" "${nlist}S" "${nlist}T"' # Transform the symbol file into the correct name. symfileobj="$output_objdir/${my_outputname}S.$objext" case $host in *cygwin* | *mingw* | *cegcc* ) if test -f "$output_objdir/$my_outputname.def"; then compile_command=`$ECHO "$compile_command" | $SED "s%@SYMFILE@%$output_objdir/$my_outputname.def $symfileobj%"` finalize_command=`$ECHO "$finalize_command" | $SED "s%@SYMFILE@%$output_objdir/$my_outputname.def $symfileobj%"` else compile_command=`$ECHO "$compile_command" | $SED "s%@SYMFILE@%$symfileobj%"` finalize_command=`$ECHO "$finalize_command" | $SED "s%@SYMFILE@%$symfileobj%"` fi ;; *) compile_command=`$ECHO "$compile_command" | $SED "s%@SYMFILE@%$symfileobj%"` finalize_command=`$ECHO "$finalize_command" | $SED "s%@SYMFILE@%$symfileobj%"` ;; esac ;; *) func_fatal_error "unknown suffix for \`$my_dlsyms'" ;; esac else # We keep going just in case the user didn't refer to # lt_preloaded_symbols. The linker will fail if global_symbol_pipe # really was required. # Nullify the symbol file. compile_command=`$ECHO "$compile_command" | $SED "s% @SYMFILE@%%"` finalize_command=`$ECHO "$finalize_command" | $SED "s% @SYMFILE@%%"` fi } # func_win32_libid arg # return the library type of file 'arg' # # Need a lot of goo to handle *both* DLLs and import libs # Has to be a shell function in order to 'eat' the argument # that is supplied when $file_magic_command is called. # Despite the name, also deal with 64 bit binaries. func_win32_libid () { $opt_debug win32_libid_type="unknown" win32_fileres=`file -L $1 2>/dev/null` case $win32_fileres in *ar\ archive\ import\ library*) # definitely import win32_libid_type="x86 archive import" ;; *ar\ archive*) # could be an import, or static # Keep the egrep pattern in sync with the one in _LT_CHECK_MAGIC_METHOD. if eval $OBJDUMP -f $1 | $SED -e '10q' 2>/dev/null | $EGREP 'file format (pei*-i386(.*architecture: i386)?|pe-arm-wince|pe-x86-64)' >/dev/null; then func_to_tool_file "$1" func_convert_file_msys_to_w32 win32_nmres=`eval $NM -f posix -A \"$func_to_tool_file_result\" | $SED -n -e ' 1,100{ / I /{ s,.*,import, p q } }'` case $win32_nmres in import*) win32_libid_type="x86 archive import";; *) win32_libid_type="x86 archive static";; esac fi ;; *DLL*) win32_libid_type="x86 DLL" ;; *executable*) # but shell scripts are "executable" too... case $win32_fileres in *MS\ Windows\ PE\ Intel*) win32_libid_type="x86 DLL" ;; esac ;; esac $ECHO "$win32_libid_type" } # func_cygming_dll_for_implib ARG # # Platform-specific function to extract the # name of the DLL associated with the specified # import library ARG. # Invoked by eval'ing the libtool variable # $sharedlib_from_linklib_cmd # Result is available in the variable # $sharedlib_from_linklib_result func_cygming_dll_for_implib () { $opt_debug sharedlib_from_linklib_result=`$DLLTOOL --identify-strict --identify "$1"` } # func_cygming_dll_for_implib_fallback_core SECTION_NAME LIBNAMEs # # The is the core of a fallback implementation of a # platform-specific function to extract the name of the # DLL associated with the specified import library LIBNAME. # # SECTION_NAME is either .idata$6 or .idata$7, depending # on the platform and compiler that created the implib. # # Echos the name of the DLL associated with the # specified import library. func_cygming_dll_for_implib_fallback_core () { $opt_debug match_literal=`$ECHO "$1" | $SED "$sed_make_literal_regex"` $OBJDUMP -s --section "$1" "$2" 2>/dev/null | $SED '/^Contents of section '"$match_literal"':/{ # Place marker at beginning of archive member dllname section s/.*/====MARK====/ p d } # These lines can sometimes be longer than 43 characters, but # are always uninteresting /:[ ]*file format pe[i]\{,1\}-/d /^In archive [^:]*:/d # Ensure marker is printed /^====MARK====/p # Remove all lines with less than 43 characters /^.\{43\}/!d # From remaining lines, remove first 43 characters s/^.\{43\}//' | $SED -n ' # Join marker and all lines until next marker into a single line /^====MARK====/ b para H $ b para b :para x s/\n//g # Remove the marker s/^====MARK====// # Remove trailing dots and whitespace s/[\. \t]*$// # Print /./p' | # we now have a list, one entry per line, of the stringified # contents of the appropriate section of all members of the # archive which possess that section. Heuristic: eliminate # all those which have a first or second character that is # a '.' (that is, objdump's representation of an unprintable # character.) This should work for all archives with less than # 0x302f exports -- but will fail for DLLs whose name actually # begins with a literal '.' or a single character followed by # a '.'. # # Of those that remain, print the first one. $SED -e '/^\./d;/^.\./d;q' } # func_cygming_gnu_implib_p ARG # This predicate returns with zero status (TRUE) if # ARG is a GNU/binutils-style import library. Returns # with nonzero status (FALSE) otherwise. func_cygming_gnu_implib_p () { $opt_debug func_to_tool_file "$1" func_convert_file_msys_to_w32 func_cygming_gnu_implib_tmp=`$NM "$func_to_tool_file_result" | eval "$global_symbol_pipe" | $EGREP ' (_head_[A-Za-z0-9_]+_[ad]l*|[A-Za-z0-9_]+_[ad]l*_iname)$'` test -n "$func_cygming_gnu_implib_tmp" } # func_cygming_ms_implib_p ARG # This predicate returns with zero status (TRUE) if # ARG is an MS-style import library. Returns # with nonzero status (FALSE) otherwise. func_cygming_ms_implib_p () { $opt_debug func_to_tool_file "$1" func_convert_file_msys_to_w32 func_cygming_ms_implib_tmp=`$NM "$func_to_tool_file_result" | eval "$global_symbol_pipe" | $GREP '_NULL_IMPORT_DESCRIPTOR'` test -n "$func_cygming_ms_implib_tmp" } # func_cygming_dll_for_implib_fallback ARG # Platform-specific function to extract the # name of the DLL associated with the specified # import library ARG. # # This fallback implementation is for use when $DLLTOOL # does not support the --identify-strict option. # Invoked by eval'ing the libtool variable # $sharedlib_from_linklib_cmd # Result is available in the variable # $sharedlib_from_linklib_result func_cygming_dll_for_implib_fallback () { $opt_debug if func_cygming_gnu_implib_p "$1" ; then # binutils import library sharedlib_from_linklib_result=`func_cygming_dll_for_implib_fallback_core '.idata$7' "$1"` elif func_cygming_ms_implib_p "$1" ; then # ms-generated import library sharedlib_from_linklib_result=`func_cygming_dll_for_implib_fallback_core '.idata$6' "$1"` else # unknown sharedlib_from_linklib_result="" fi } # func_extract_an_archive dir oldlib func_extract_an_archive () { $opt_debug f_ex_an_ar_dir="$1"; shift f_ex_an_ar_oldlib="$1" if test "$lock_old_archive_extraction" = yes; then lockfile=$f_ex_an_ar_oldlib.lock until $opt_dry_run || ln "$progpath" "$lockfile" 2>/dev/null; do func_echo "Waiting for $lockfile to be removed" sleep 2 done fi func_show_eval "(cd \$f_ex_an_ar_dir && $AR x \"\$f_ex_an_ar_oldlib\")" \ 'stat=$?; rm -f "$lockfile"; exit $stat' if test "$lock_old_archive_extraction" = yes; then $opt_dry_run || rm -f "$lockfile" fi if ($AR t "$f_ex_an_ar_oldlib" | sort | sort -uc >/dev/null 2>&1); then : else func_fatal_error "object name conflicts in archive: $f_ex_an_ar_dir/$f_ex_an_ar_oldlib" fi } # func_extract_archives gentop oldlib ... func_extract_archives () { $opt_debug my_gentop="$1"; shift my_oldlibs=${1+"$@"} my_oldobjs="" my_xlib="" my_xabs="" my_xdir="" for my_xlib in $my_oldlibs; do # Extract the objects. case $my_xlib in [\\/]* | [A-Za-z]:[\\/]*) my_xabs="$my_xlib" ;; *) my_xabs=`pwd`"/$my_xlib" ;; esac func_basename "$my_xlib" my_xlib="$func_basename_result" my_xlib_u=$my_xlib while :; do case " $extracted_archives " in *" $my_xlib_u "*) func_arith $extracted_serial + 1 extracted_serial=$func_arith_result my_xlib_u=lt$extracted_serial-$my_xlib ;; *) break ;; esac done extracted_archives="$extracted_archives $my_xlib_u" my_xdir="$my_gentop/$my_xlib_u" func_mkdir_p "$my_xdir" case $host in *-darwin*) func_verbose "Extracting $my_xabs" # Do not bother doing anything if just a dry run $opt_dry_run || { darwin_orig_dir=`pwd` cd $my_xdir || exit $? darwin_archive=$my_xabs darwin_curdir=`pwd` darwin_base_archive=`basename "$darwin_archive"` darwin_arches=`$LIPO -info "$darwin_archive" 2>/dev/null | $GREP Architectures 2>/dev/null || true` if test -n "$darwin_arches"; then darwin_arches=`$ECHO "$darwin_arches" | $SED -e 's/.*are://'` darwin_arch= func_verbose "$darwin_base_archive has multiple architectures $darwin_arches" for darwin_arch in $darwin_arches ; do func_mkdir_p "unfat-$$/${darwin_base_archive}-${darwin_arch}" $LIPO -thin $darwin_arch -output "unfat-$$/${darwin_base_archive}-${darwin_arch}/${darwin_base_archive}" "${darwin_archive}" cd "unfat-$$/${darwin_base_archive}-${darwin_arch}" func_extract_an_archive "`pwd`" "${darwin_base_archive}" cd "$darwin_curdir" $RM "unfat-$$/${darwin_base_archive}-${darwin_arch}/${darwin_base_archive}" done # $darwin_arches ## Okay now we've a bunch of thin objects, gotta fatten them up :) darwin_filelist=`find unfat-$$ -type f -name \*.o -print -o -name \*.lo -print | $SED -e "$basename" | sort -u` darwin_file= darwin_files= for darwin_file in $darwin_filelist; do darwin_files=`find unfat-$$ -name $darwin_file -print | sort | $NL2SP` $LIPO -create -output "$darwin_file" $darwin_files done # $darwin_filelist $RM -rf unfat-$$ cd "$darwin_orig_dir" else cd $darwin_orig_dir func_extract_an_archive "$my_xdir" "$my_xabs" fi # $darwin_arches } # !$opt_dry_run ;; *) func_extract_an_archive "$my_xdir" "$my_xabs" ;; esac my_oldobjs="$my_oldobjs "`find $my_xdir -name \*.$objext -print -o -name \*.lo -print | sort | $NL2SP` done func_extract_archives_result="$my_oldobjs" } # func_emit_wrapper [arg=no] # # Emit a libtool wrapper script on stdout. # Don't directly open a file because we may want to # incorporate the script contents within a cygwin/mingw # wrapper executable. Must ONLY be called from within # func_mode_link because it depends on a number of variables # set therein. # # ARG is the value that the WRAPPER_SCRIPT_BELONGS_IN_OBJDIR # variable will take. If 'yes', then the emitted script # will assume that the directory in which it is stored is # the $objdir directory. This is a cygwin/mingw-specific # behavior. func_emit_wrapper () { func_emit_wrapper_arg1=${1-no} $ECHO "\ #! $SHELL # $output - temporary wrapper script for $objdir/$outputname # Generated by $PROGRAM (GNU $PACKAGE$TIMESTAMP) $VERSION # # The $output program cannot be directly executed until all the libtool # libraries that it depends on are installed. # # This wrapper script should never be moved out of the build directory. # If it is, it will not operate correctly. # Sed substitution that helps us do robust quoting. It backslashifies # metacharacters that are still active within double-quoted strings. sed_quote_subst='$sed_quote_subst' # Be Bourne compatible if test -n \"\${ZSH_VERSION+set}\" && (emulate sh) >/dev/null 2>&1; then emulate sh NULLCMD=: # Zsh 3.x and 4.x performs word splitting on \${1+\"\$@\"}, which # is contrary to our usage. Disable this feature. alias -g '\${1+\"\$@\"}'='\"\$@\"' setopt NO_GLOB_SUBST else case \`(set -o) 2>/dev/null\` in *posix*) set -o posix;; esac fi BIN_SH=xpg4; export BIN_SH # for Tru64 DUALCASE=1; export DUALCASE # for MKS sh # The HP-UX ksh and POSIX shell print the target directory to stdout # if CDPATH is set. (unset CDPATH) >/dev/null 2>&1 && unset CDPATH relink_command=\"$relink_command\" # This environment variable determines our operation mode. if test \"\$libtool_install_magic\" = \"$magic\"; then # install mode needs the following variables: generated_by_libtool_version='$macro_version' notinst_deplibs='$notinst_deplibs' else # When we are sourced in execute mode, \$file and \$ECHO are already set. if test \"\$libtool_execute_magic\" != \"$magic\"; then file=\"\$0\"" qECHO=`$ECHO "$ECHO" | $SED "$sed_quote_subst"` $ECHO "\ # A function that is used when there is no print builtin or printf. func_fallback_echo () { eval 'cat <<_LTECHO_EOF \$1 _LTECHO_EOF' } ECHO=\"$qECHO\" fi # Very basic option parsing. These options are (a) specific to # the libtool wrapper, (b) are identical between the wrapper # /script/ and the wrapper /executable/ which is used only on # windows platforms, and (c) all begin with the string "--lt-" # (application programs are unlikely to have options which match # this pattern). # # There are only two supported options: --lt-debug and # --lt-dump-script. There is, deliberately, no --lt-help. # # The first argument to this parsing function should be the # script's $0 value, followed by "$@". lt_option_debug= func_parse_lt_options () { lt_script_arg0=\$0 shift for lt_opt do case \"\$lt_opt\" in --lt-debug) lt_option_debug=1 ;; --lt-dump-script) lt_dump_D=\`\$ECHO \"X\$lt_script_arg0\" | $SED -e 's/^X//' -e 's%/[^/]*$%%'\` test \"X\$lt_dump_D\" = \"X\$lt_script_arg0\" && lt_dump_D=. lt_dump_F=\`\$ECHO \"X\$lt_script_arg0\" | $SED -e 's/^X//' -e 's%^.*/%%'\` cat \"\$lt_dump_D/\$lt_dump_F\" exit 0 ;; --lt-*) \$ECHO \"Unrecognized --lt- option: '\$lt_opt'\" 1>&2 exit 1 ;; esac done # Print the debug banner immediately: if test -n \"\$lt_option_debug\"; then echo \"${outputname}:${output}:\${LINENO}: libtool wrapper (GNU $PACKAGE$TIMESTAMP) $VERSION\" 1>&2 fi } # Used when --lt-debug. Prints its arguments to stdout # (redirection is the responsibility of the caller) func_lt_dump_args () { lt_dump_args_N=1; for lt_arg do \$ECHO \"${outputname}:${output}:\${LINENO}: newargv[\$lt_dump_args_N]: \$lt_arg\" lt_dump_args_N=\`expr \$lt_dump_args_N + 1\` done } # Core function for launching the target application func_exec_program_core () { " case $host in # Backslashes separate directories on plain windows *-*-mingw | *-*-os2* | *-cegcc*) $ECHO "\ if test -n \"\$lt_option_debug\"; then \$ECHO \"${outputname}:${output}:\${LINENO}: newargv[0]: \$progdir\\\\\$program\" 1>&2 func_lt_dump_args \${1+\"\$@\"} 1>&2 fi exec \"\$progdir\\\\\$program\" \${1+\"\$@\"} " ;; *) $ECHO "\ if test -n \"\$lt_option_debug\"; then \$ECHO \"${outputname}:${output}:\${LINENO}: newargv[0]: \$progdir/\$program\" 1>&2 func_lt_dump_args \${1+\"\$@\"} 1>&2 fi exec \"\$progdir/\$program\" \${1+\"\$@\"} " ;; esac $ECHO "\ \$ECHO \"\$0: cannot exec \$program \$*\" 1>&2 exit 1 } # A function to encapsulate launching the target application # Strips options in the --lt-* namespace from \$@ and # launches target application with the remaining arguments. func_exec_program () { case \" \$* \" in *\\ --lt-*) for lt_wr_arg do case \$lt_wr_arg in --lt-*) ;; *) set x \"\$@\" \"\$lt_wr_arg\"; shift;; esac shift done ;; esac func_exec_program_core \${1+\"\$@\"} } # Parse options func_parse_lt_options \"\$0\" \${1+\"\$@\"} # Find the directory that this script lives in. thisdir=\`\$ECHO \"\$file\" | $SED 's%/[^/]*$%%'\` test \"x\$thisdir\" = \"x\$file\" && thisdir=. # Follow symbolic links until we get to the real thisdir. file=\`ls -ld \"\$file\" | $SED -n 's/.*-> //p'\` while test -n \"\$file\"; do destdir=\`\$ECHO \"\$file\" | $SED 's%/[^/]*\$%%'\` # If there was a directory component, then change thisdir. if test \"x\$destdir\" != \"x\$file\"; then case \"\$destdir\" in [\\\\/]* | [A-Za-z]:[\\\\/]*) thisdir=\"\$destdir\" ;; *) thisdir=\"\$thisdir/\$destdir\" ;; esac fi file=\`\$ECHO \"\$file\" | $SED 's%^.*/%%'\` file=\`ls -ld \"\$thisdir/\$file\" | $SED -n 's/.*-> //p'\` done # Usually 'no', except on cygwin/mingw when embedded into # the cwrapper. WRAPPER_SCRIPT_BELONGS_IN_OBJDIR=$func_emit_wrapper_arg1 if test \"\$WRAPPER_SCRIPT_BELONGS_IN_OBJDIR\" = \"yes\"; then # special case for '.' if test \"\$thisdir\" = \".\"; then thisdir=\`pwd\` fi # remove .libs from thisdir case \"\$thisdir\" in *[\\\\/]$objdir ) thisdir=\`\$ECHO \"\$thisdir\" | $SED 's%[\\\\/][^\\\\/]*$%%'\` ;; $objdir ) thisdir=. ;; esac fi # Try to get the absolute directory name. absdir=\`cd \"\$thisdir\" && pwd\` test -n \"\$absdir\" && thisdir=\"\$absdir\" " if test "$fast_install" = yes; then $ECHO "\ program=lt-'$outputname'$exeext progdir=\"\$thisdir/$objdir\" if test ! -f \"\$progdir/\$program\" || { file=\`ls -1dt \"\$progdir/\$program\" \"\$progdir/../\$program\" 2>/dev/null | ${SED} 1q\`; \\ test \"X\$file\" != \"X\$progdir/\$program\"; }; then file=\"\$\$-\$program\" if test ! -d \"\$progdir\"; then $MKDIR \"\$progdir\" else $RM \"\$progdir/\$file\" fi" $ECHO "\ # relink executable if necessary if test -n \"\$relink_command\"; then if relink_command_output=\`eval \$relink_command 2>&1\`; then : else $ECHO \"\$relink_command_output\" >&2 $RM \"\$progdir/\$file\" exit 1 fi fi $MV \"\$progdir/\$file\" \"\$progdir/\$program\" 2>/dev/null || { $RM \"\$progdir/\$program\"; $MV \"\$progdir/\$file\" \"\$progdir/\$program\"; } $RM \"\$progdir/\$file\" fi" else $ECHO "\ program='$outputname' progdir=\"\$thisdir/$objdir\" " fi $ECHO "\ if test -f \"\$progdir/\$program\"; then" # fixup the dll searchpath if we need to. # # Fix the DLL searchpath if we need to. Do this before prepending # to shlibpath, because on Windows, both are PATH and uninstalled # libraries must come first. if test -n "$dllsearchpath"; then $ECHO "\ # Add the dll search path components to the executable PATH PATH=$dllsearchpath:\$PATH " fi # Export our shlibpath_var if we have one. if test "$shlibpath_overrides_runpath" = yes && test -n "$shlibpath_var" && test -n "$temp_rpath"; then $ECHO "\ # Add our own library path to $shlibpath_var $shlibpath_var=\"$temp_rpath\$$shlibpath_var\" # Some systems cannot cope with colon-terminated $shlibpath_var # The second colon is a workaround for a bug in BeOS R4 sed $shlibpath_var=\`\$ECHO \"\$$shlibpath_var\" | $SED 's/::*\$//'\` export $shlibpath_var " fi $ECHO "\ if test \"\$libtool_execute_magic\" != \"$magic\"; then # Run the actual program with our arguments. func_exec_program \${1+\"\$@\"} fi else # The program doesn't exist. \$ECHO \"\$0: error: \\\`\$progdir/\$program' does not exist\" 1>&2 \$ECHO \"This script is just a wrapper for \$program.\" 1>&2 \$ECHO \"See the $PACKAGE documentation for more information.\" 1>&2 exit 1 fi fi\ " } # func_emit_cwrapperexe_src # emit the source code for a wrapper executable on stdout # Must ONLY be called from within func_mode_link because # it depends on a number of variable set therein. func_emit_cwrapperexe_src () { cat < #include #ifdef _MSC_VER # include # include # include #else # include # include # ifdef __CYGWIN__ # include # endif #endif #include #include #include #include #include #include #include #include /* declarations of non-ANSI functions */ #if defined(__MINGW32__) # ifdef __STRICT_ANSI__ int _putenv (const char *); # endif #elif defined(__CYGWIN__) # ifdef __STRICT_ANSI__ char *realpath (const char *, char *); int putenv (char *); int setenv (const char *, const char *, int); # endif /* #elif defined (other platforms) ... */ #endif /* portability defines, excluding path handling macros */ #if defined(_MSC_VER) # define setmode _setmode # define stat _stat # define chmod _chmod # define getcwd _getcwd # define putenv _putenv # define S_IXUSR _S_IEXEC # ifndef _INTPTR_T_DEFINED # define _INTPTR_T_DEFINED # define intptr_t int # endif #elif defined(__MINGW32__) # define setmode _setmode # define stat _stat # define chmod _chmod # define getcwd _getcwd # define putenv _putenv #elif defined(__CYGWIN__) # define HAVE_SETENV # define FOPEN_WB "wb" /* #elif defined (other platforms) ... */ #endif #if defined(PATH_MAX) # define LT_PATHMAX PATH_MAX #elif defined(MAXPATHLEN) # define LT_PATHMAX MAXPATHLEN #else # define LT_PATHMAX 1024 #endif #ifndef S_IXOTH # define S_IXOTH 0 #endif #ifndef S_IXGRP # define S_IXGRP 0 #endif /* path handling portability macros */ #ifndef DIR_SEPARATOR # define DIR_SEPARATOR '/' # define PATH_SEPARATOR ':' #endif #if defined (_WIN32) || defined (__MSDOS__) || defined (__DJGPP__) || \ defined (__OS2__) # define HAVE_DOS_BASED_FILE_SYSTEM # define FOPEN_WB "wb" # ifndef DIR_SEPARATOR_2 # define DIR_SEPARATOR_2 '\\' # endif # ifndef PATH_SEPARATOR_2 # define PATH_SEPARATOR_2 ';' # endif #endif #ifndef DIR_SEPARATOR_2 # define IS_DIR_SEPARATOR(ch) ((ch) == DIR_SEPARATOR) #else /* DIR_SEPARATOR_2 */ # define IS_DIR_SEPARATOR(ch) \ (((ch) == DIR_SEPARATOR) || ((ch) == DIR_SEPARATOR_2)) #endif /* DIR_SEPARATOR_2 */ #ifndef PATH_SEPARATOR_2 # define IS_PATH_SEPARATOR(ch) ((ch) == PATH_SEPARATOR) #else /* PATH_SEPARATOR_2 */ # define IS_PATH_SEPARATOR(ch) ((ch) == PATH_SEPARATOR_2) #endif /* PATH_SEPARATOR_2 */ #ifndef FOPEN_WB # define FOPEN_WB "w" #endif #ifndef _O_BINARY # define _O_BINARY 0 #endif #define XMALLOC(type, num) ((type *) xmalloc ((num) * sizeof(type))) #define XFREE(stale) do { \ if (stale) { free ((void *) stale); stale = 0; } \ } while (0) #if defined(LT_DEBUGWRAPPER) static int lt_debug = 1; #else static int lt_debug = 0; #endif const char *program_name = "libtool-wrapper"; /* in case xstrdup fails */ void *xmalloc (size_t num); char *xstrdup (const char *string); const char *base_name (const char *name); char *find_executable (const char *wrapper); char *chase_symlinks (const char *pathspec); int make_executable (const char *path); int check_executable (const char *path); char *strendzap (char *str, const char *pat); void lt_debugprintf (const char *file, int line, const char *fmt, ...); void lt_fatal (const char *file, int line, const char *message, ...); static const char *nonnull (const char *s); static const char *nonempty (const char *s); void lt_setenv (const char *name, const char *value); char *lt_extend_str (const char *orig_value, const char *add, int to_end); void lt_update_exe_path (const char *name, const char *value); void lt_update_lib_path (const char *name, const char *value); char **prepare_spawn (char **argv); void lt_dump_script (FILE *f); EOF cat <= 0) && (st.st_mode & (S_IXUSR | S_IXGRP | S_IXOTH))) return 1; else return 0; } int make_executable (const char *path) { int rval = 0; struct stat st; lt_debugprintf (__FILE__, __LINE__, "(make_executable): %s\n", nonempty (path)); if ((!path) || (!*path)) return 0; if (stat (path, &st) >= 0) { rval = chmod (path, st.st_mode | S_IXOTH | S_IXGRP | S_IXUSR); } return rval; } /* Searches for the full path of the wrapper. Returns newly allocated full path name if found, NULL otherwise Does not chase symlinks, even on platforms that support them. */ char * find_executable (const char *wrapper) { int has_slash = 0; const char *p; const char *p_next; /* static buffer for getcwd */ char tmp[LT_PATHMAX + 1]; int tmp_len; char *concat_name; lt_debugprintf (__FILE__, __LINE__, "(find_executable): %s\n", nonempty (wrapper)); if ((wrapper == NULL) || (*wrapper == '\0')) return NULL; /* Absolute path? */ #if defined (HAVE_DOS_BASED_FILE_SYSTEM) if (isalpha ((unsigned char) wrapper[0]) && wrapper[1] == ':') { concat_name = xstrdup (wrapper); if (check_executable (concat_name)) return concat_name; XFREE (concat_name); } else { #endif if (IS_DIR_SEPARATOR (wrapper[0])) { concat_name = xstrdup (wrapper); if (check_executable (concat_name)) return concat_name; XFREE (concat_name); } #if defined (HAVE_DOS_BASED_FILE_SYSTEM) } #endif for (p = wrapper; *p; p++) if (*p == '/') { has_slash = 1; break; } if (!has_slash) { /* no slashes; search PATH */ const char *path = getenv ("PATH"); if (path != NULL) { for (p = path; *p; p = p_next) { const char *q; size_t p_len; for (q = p; *q; q++) if (IS_PATH_SEPARATOR (*q)) break; p_len = q - p; p_next = (*q == '\0' ? q : q + 1); if (p_len == 0) { /* empty path: current directory */ if (getcwd (tmp, LT_PATHMAX) == NULL) lt_fatal (__FILE__, __LINE__, "getcwd failed: %s", nonnull (strerror (errno))); tmp_len = strlen (tmp); concat_name = XMALLOC (char, tmp_len + 1 + strlen (wrapper) + 1); memcpy (concat_name, tmp, tmp_len); concat_name[tmp_len] = '/'; strcpy (concat_name + tmp_len + 1, wrapper); } else { concat_name = XMALLOC (char, p_len + 1 + strlen (wrapper) + 1); memcpy (concat_name, p, p_len); concat_name[p_len] = '/'; strcpy (concat_name + p_len + 1, wrapper); } if (check_executable (concat_name)) return concat_name; XFREE (concat_name); } } /* not found in PATH; assume curdir */ } /* Relative path | not found in path: prepend cwd */ if (getcwd (tmp, LT_PATHMAX) == NULL) lt_fatal (__FILE__, __LINE__, "getcwd failed: %s", nonnull (strerror (errno))); tmp_len = strlen (tmp); concat_name = XMALLOC (char, tmp_len + 1 + strlen (wrapper) + 1); memcpy (concat_name, tmp, tmp_len); concat_name[tmp_len] = '/'; strcpy (concat_name + tmp_len + 1, wrapper); if (check_executable (concat_name)) return concat_name; XFREE (concat_name); return NULL; } char * chase_symlinks (const char *pathspec) { #ifndef S_ISLNK return xstrdup (pathspec); #else char buf[LT_PATHMAX]; struct stat s; char *tmp_pathspec = xstrdup (pathspec); char *p; int has_symlinks = 0; while (strlen (tmp_pathspec) && !has_symlinks) { lt_debugprintf (__FILE__, __LINE__, "checking path component for symlinks: %s\n", tmp_pathspec); if (lstat (tmp_pathspec, &s) == 0) { if (S_ISLNK (s.st_mode) != 0) { has_symlinks = 1; break; } /* search backwards for last DIR_SEPARATOR */ p = tmp_pathspec + strlen (tmp_pathspec) - 1; while ((p > tmp_pathspec) && (!IS_DIR_SEPARATOR (*p))) p--; if ((p == tmp_pathspec) && (!IS_DIR_SEPARATOR (*p))) { /* no more DIR_SEPARATORS left */ break; } *p = '\0'; } else { lt_fatal (__FILE__, __LINE__, "error accessing file \"%s\": %s", tmp_pathspec, nonnull (strerror (errno))); } } XFREE (tmp_pathspec); if (!has_symlinks) { return xstrdup (pathspec); } tmp_pathspec = realpath (pathspec, buf); if (tmp_pathspec == 0) { lt_fatal (__FILE__, __LINE__, "could not follow symlinks for %s", pathspec); } return xstrdup (tmp_pathspec); #endif } char * strendzap (char *str, const char *pat) { size_t len, patlen; assert (str != NULL); assert (pat != NULL); len = strlen (str); patlen = strlen (pat); if (patlen <= len) { str += len - patlen; if (strcmp (str, pat) == 0) *str = '\0'; } return str; } void lt_debugprintf (const char *file, int line, const char *fmt, ...) { va_list args; if (lt_debug) { (void) fprintf (stderr, "%s:%s:%d: ", program_name, file, line); va_start (args, fmt); (void) vfprintf (stderr, fmt, args); va_end (args); } } static void lt_error_core (int exit_status, const char *file, int line, const char *mode, const char *message, va_list ap) { fprintf (stderr, "%s:%s:%d: %s: ", program_name, file, line, mode); vfprintf (stderr, message, ap); fprintf (stderr, ".\n"); if (exit_status >= 0) exit (exit_status); } void lt_fatal (const char *file, int line, const char *message, ...) { va_list ap; va_start (ap, message); lt_error_core (EXIT_FAILURE, file, line, "FATAL", message, ap); va_end (ap); } static const char * nonnull (const char *s) { return s ? s : "(null)"; } static const char * nonempty (const char *s) { return (s && !*s) ? "(empty)" : nonnull (s); } void lt_setenv (const char *name, const char *value) { lt_debugprintf (__FILE__, __LINE__, "(lt_setenv) setting '%s' to '%s'\n", nonnull (name), nonnull (value)); { #ifdef HAVE_SETENV /* always make a copy, for consistency with !HAVE_SETENV */ char *str = xstrdup (value); setenv (name, str, 1); #else int len = strlen (name) + 1 + strlen (value) + 1; char *str = XMALLOC (char, len); sprintf (str, "%s=%s", name, value); if (putenv (str) != EXIT_SUCCESS) { XFREE (str); } #endif } } char * lt_extend_str (const char *orig_value, const char *add, int to_end) { char *new_value; if (orig_value && *orig_value) { int orig_value_len = strlen (orig_value); int add_len = strlen (add); new_value = XMALLOC (char, add_len + orig_value_len + 1); if (to_end) { strcpy (new_value, orig_value); strcpy (new_value + orig_value_len, add); } else { strcpy (new_value, add); strcpy (new_value + add_len, orig_value); } } else { new_value = xstrdup (add); } return new_value; } void lt_update_exe_path (const char *name, const char *value) { lt_debugprintf (__FILE__, __LINE__, "(lt_update_exe_path) modifying '%s' by prepending '%s'\n", nonnull (name), nonnull (value)); if (name && *name && value && *value) { char *new_value = lt_extend_str (getenv (name), value, 0); /* some systems can't cope with a ':'-terminated path #' */ int len = strlen (new_value); while (((len = strlen (new_value)) > 0) && IS_PATH_SEPARATOR (new_value[len-1])) { new_value[len-1] = '\0'; } lt_setenv (name, new_value); XFREE (new_value); } } void lt_update_lib_path (const char *name, const char *value) { lt_debugprintf (__FILE__, __LINE__, "(lt_update_lib_path) modifying '%s' by prepending '%s'\n", nonnull (name), nonnull (value)); if (name && *name && value && *value) { char *new_value = lt_extend_str (getenv (name), value, 0); lt_setenv (name, new_value); XFREE (new_value); } } EOF case $host_os in mingw*) cat <<"EOF" /* Prepares an argument vector before calling spawn(). Note that spawn() does not by itself call the command interpreter (getenv ("COMSPEC") != NULL ? getenv ("COMSPEC") : ({ OSVERSIONINFO v; v.dwOSVersionInfoSize = sizeof(OSVERSIONINFO); GetVersionEx(&v); v.dwPlatformId == VER_PLATFORM_WIN32_NT; }) ? "cmd.exe" : "command.com"). Instead it simply concatenates the arguments, separated by ' ', and calls CreateProcess(). We must quote the arguments since Win32 CreateProcess() interprets characters like ' ', '\t', '\\', '"' (but not '<' and '>') in a special way: - Space and tab are interpreted as delimiters. They are not treated as delimiters if they are surrounded by double quotes: "...". - Unescaped double quotes are removed from the input. Their only effect is that within double quotes, space and tab are treated like normal characters. - Backslashes not followed by double quotes are not special. - But 2*n+1 backslashes followed by a double quote become n backslashes followed by a double quote (n >= 0): \" -> " \\\" -> \" \\\\\" -> \\" */ #define SHELL_SPECIAL_CHARS "\"\\ \001\002\003\004\005\006\007\010\011\012\013\014\015\016\017\020\021\022\023\024\025\026\027\030\031\032\033\034\035\036\037" #define SHELL_SPACE_CHARS " \001\002\003\004\005\006\007\010\011\012\013\014\015\016\017\020\021\022\023\024\025\026\027\030\031\032\033\034\035\036\037" char ** prepare_spawn (char **argv) { size_t argc; char **new_argv; size_t i; /* Count number of arguments. */ for (argc = 0; argv[argc] != NULL; argc++) ; /* Allocate new argument vector. */ new_argv = XMALLOC (char *, argc + 1); /* Put quoted arguments into the new argument vector. */ for (i = 0; i < argc; i++) { const char *string = argv[i]; if (string[0] == '\0') new_argv[i] = xstrdup ("\"\""); else if (strpbrk (string, SHELL_SPECIAL_CHARS) != NULL) { int quote_around = (strpbrk (string, SHELL_SPACE_CHARS) != NULL); size_t length; unsigned int backslashes; const char *s; char *quoted_string; char *p; length = 0; backslashes = 0; if (quote_around) length++; for (s = string; *s != '\0'; s++) { char c = *s; if (c == '"') length += backslashes + 1; length++; if (c == '\\') backslashes++; else backslashes = 0; } if (quote_around) length += backslashes + 1; quoted_string = XMALLOC (char, length + 1); p = quoted_string; backslashes = 0; if (quote_around) *p++ = '"'; for (s = string; *s != '\0'; s++) { char c = *s; if (c == '"') { unsigned int j; for (j = backslashes + 1; j > 0; j--) *p++ = '\\'; } *p++ = c; if (c == '\\') backslashes++; else backslashes = 0; } if (quote_around) { unsigned int j; for (j = backslashes; j > 0; j--) *p++ = '\\'; *p++ = '"'; } *p = '\0'; new_argv[i] = quoted_string; } else new_argv[i] = (char *) string; } new_argv[argc] = NULL; return new_argv; } EOF ;; esac cat <<"EOF" void lt_dump_script (FILE* f) { EOF func_emit_wrapper yes | $SED -n -e ' s/^\(.\{79\}\)\(..*\)/\1\ \2/ h s/\([\\"]\)/\\\1/g s/$/\\n/ s/\([^\n]*\).*/ fputs ("\1", f);/p g D' cat <<"EOF" } EOF } # end: func_emit_cwrapperexe_src # func_win32_import_lib_p ARG # True if ARG is an import lib, as indicated by $file_magic_cmd func_win32_import_lib_p () { $opt_debug case `eval $file_magic_cmd \"\$1\" 2>/dev/null | $SED -e 10q` in *import*) : ;; *) false ;; esac } # func_mode_link arg... func_mode_link () { $opt_debug case $host in *-*-cygwin* | *-*-mingw* | *-*-pw32* | *-*-os2* | *-cegcc*) # It is impossible to link a dll without this setting, and # we shouldn't force the makefile maintainer to figure out # which system we are compiling for in order to pass an extra # flag for every libtool invocation. # allow_undefined=no # FIXME: Unfortunately, there are problems with the above when trying # to make a dll which has undefined symbols, in which case not # even a static library is built. For now, we need to specify # -no-undefined on the libtool link line when we can be certain # that all symbols are satisfied, otherwise we get a static library. allow_undefined=yes ;; *) allow_undefined=yes ;; esac libtool_args=$nonopt base_compile="$nonopt $@" compile_command=$nonopt finalize_command=$nonopt compile_rpath= finalize_rpath= compile_shlibpath= finalize_shlibpath= convenience= old_convenience= deplibs= old_deplibs= compiler_flags= linker_flags= dllsearchpath= lib_search_path=`pwd` inst_prefix_dir= new_inherited_linker_flags= avoid_version=no bindir= dlfiles= dlprefiles= dlself=no export_dynamic=no export_symbols= export_symbols_regex= generated= libobjs= ltlibs= module=no no_install=no objs= non_pic_objects= precious_files_regex= prefer_static_libs=no preload=no prev= prevarg= release= rpath= xrpath= perm_rpath= temp_rpath= thread_safe=no vinfo= vinfo_number=no weak_libs= single_module="${wl}-single_module" func_infer_tag $base_compile # We need to know -static, to get the right output filenames. for arg do case $arg in -shared) test "$build_libtool_libs" != yes && \ func_fatal_configuration "can not build a shared library" build_old_libs=no break ;; -all-static | -static | -static-libtool-libs) case $arg in -all-static) if test "$build_libtool_libs" = yes && test -z "$link_static_flag"; then func_warning "complete static linking is impossible in this configuration" fi if test -n "$link_static_flag"; then dlopen_self=$dlopen_self_static fi prefer_static_libs=yes ;; -static) if test -z "$pic_flag" && test -n "$link_static_flag"; then dlopen_self=$dlopen_self_static fi prefer_static_libs=built ;; -static-libtool-libs) if test -z "$pic_flag" && test -n "$link_static_flag"; then dlopen_self=$dlopen_self_static fi prefer_static_libs=yes ;; esac build_libtool_libs=no build_old_libs=yes break ;; esac done # See if our shared archives depend on static archives. test -n "$old_archive_from_new_cmds" && build_old_libs=yes # Go through the arguments, transforming them on the way. while test "$#" -gt 0; do arg="$1" shift func_quote_for_eval "$arg" qarg=$func_quote_for_eval_unquoted_result func_append libtool_args " $func_quote_for_eval_result" # If the previous option needs an argument, assign it. if test -n "$prev"; then case $prev in output) func_append compile_command " @OUTPUT@" func_append finalize_command " @OUTPUT@" ;; esac case $prev in bindir) bindir="$arg" prev= continue ;; dlfiles|dlprefiles) if test "$preload" = no; then # Add the symbol object into the linking commands. func_append compile_command " @SYMFILE@" func_append finalize_command " @SYMFILE@" preload=yes fi case $arg in *.la | *.lo) ;; # We handle these cases below. force) if test "$dlself" = no; then dlself=needless export_dynamic=yes fi prev= continue ;; self) if test "$prev" = dlprefiles; then dlself=yes elif test "$prev" = dlfiles && test "$dlopen_self" != yes; then dlself=yes else dlself=needless export_dynamic=yes fi prev= continue ;; *) if test "$prev" = dlfiles; then func_append dlfiles " $arg" else func_append dlprefiles " $arg" fi prev= continue ;; esac ;; expsyms) export_symbols="$arg" test -f "$arg" \ || func_fatal_error "symbol file \`$arg' does not exist" prev= continue ;; expsyms_regex) export_symbols_regex="$arg" prev= continue ;; framework) case $host in *-*-darwin*) case "$deplibs " in *" $qarg.ltframework "*) ;; *) func_append deplibs " $qarg.ltframework" # this is fixed later ;; esac ;; esac prev= continue ;; inst_prefix) inst_prefix_dir="$arg" prev= continue ;; objectlist) if test -f "$arg"; then save_arg=$arg moreargs= for fil in `cat "$save_arg"` do # func_append moreargs " $fil" arg=$fil # A libtool-controlled object. # Check to see that this really is a libtool object. if func_lalib_unsafe_p "$arg"; then pic_object= non_pic_object= # Read the .lo file func_source "$arg" if test -z "$pic_object" || test -z "$non_pic_object" || test "$pic_object" = none && test "$non_pic_object" = none; then func_fatal_error "cannot find name of object for \`$arg'" fi # Extract subdirectory from the argument. func_dirname "$arg" "/" "" xdir="$func_dirname_result" if test "$pic_object" != none; then # Prepend the subdirectory the object is found in. pic_object="$xdir$pic_object" if test "$prev" = dlfiles; then if test "$build_libtool_libs" = yes && test "$dlopen_support" = yes; then func_append dlfiles " $pic_object" prev= continue else # If libtool objects are unsupported, then we need to preload. prev=dlprefiles fi fi # CHECK ME: I think I busted this. -Ossama if test "$prev" = dlprefiles; then # Preload the old-style object. func_append dlprefiles " $pic_object" prev= fi # A PIC object. func_append libobjs " $pic_object" arg="$pic_object" fi # Non-PIC object. if test "$non_pic_object" != none; then # Prepend the subdirectory the object is found in. non_pic_object="$xdir$non_pic_object" # A standard non-PIC object func_append non_pic_objects " $non_pic_object" if test -z "$pic_object" || test "$pic_object" = none ; then arg="$non_pic_object" fi else # If the PIC object exists, use it instead. # $xdir was prepended to $pic_object above. non_pic_object="$pic_object" func_append non_pic_objects " $non_pic_object" fi else # Only an error if not doing a dry-run. if $opt_dry_run; then # Extract subdirectory from the argument. func_dirname "$arg" "/" "" xdir="$func_dirname_result" func_lo2o "$arg" pic_object=$xdir$objdir/$func_lo2o_result non_pic_object=$xdir$func_lo2o_result func_append libobjs " $pic_object" func_append non_pic_objects " $non_pic_object" else func_fatal_error "\`$arg' is not a valid libtool object" fi fi done else func_fatal_error "link input file \`$arg' does not exist" fi arg=$save_arg prev= continue ;; precious_regex) precious_files_regex="$arg" prev= continue ;; release) release="-$arg" prev= continue ;; rpath | xrpath) # We need an absolute path. case $arg in [\\/]* | [A-Za-z]:[\\/]*) ;; *) func_fatal_error "only absolute run-paths are allowed" ;; esac if test "$prev" = rpath; then case "$rpath " in *" $arg "*) ;; *) func_append rpath " $arg" ;; esac else case "$xrpath " in *" $arg "*) ;; *) func_append xrpath " $arg" ;; esac fi prev= continue ;; shrext) shrext_cmds="$arg" prev= continue ;; weak) func_append weak_libs " $arg" prev= continue ;; xcclinker) func_append linker_flags " $qarg" func_append compiler_flags " $qarg" prev= func_append compile_command " $qarg" func_append finalize_command " $qarg" continue ;; xcompiler) func_append compiler_flags " $qarg" prev= func_append compile_command " $qarg" func_append finalize_command " $qarg" continue ;; xlinker) func_append linker_flags " $qarg" func_append compiler_flags " $wl$qarg" prev= func_append compile_command " $wl$qarg" func_append finalize_command " $wl$qarg" continue ;; *) eval "$prev=\"\$arg\"" prev= continue ;; esac fi # test -n "$prev" prevarg="$arg" case $arg in -all-static) if test -n "$link_static_flag"; then # See comment for -static flag below, for more details. func_append compile_command " $link_static_flag" func_append finalize_command " $link_static_flag" fi continue ;; -allow-undefined) # FIXME: remove this flag sometime in the future. func_fatal_error "\`-allow-undefined' must not be used because it is the default" ;; -avoid-version) avoid_version=yes continue ;; -bindir) prev=bindir continue ;; -dlopen) prev=dlfiles continue ;; -dlpreopen) prev=dlprefiles continue ;; -export-dynamic) export_dynamic=yes continue ;; -export-symbols | -export-symbols-regex) if test -n "$export_symbols" || test -n "$export_symbols_regex"; then func_fatal_error "more than one -exported-symbols argument is not allowed" fi if test "X$arg" = "X-export-symbols"; then prev=expsyms else prev=expsyms_regex fi continue ;; -framework) prev=framework continue ;; -inst-prefix-dir) prev=inst_prefix continue ;; # The native IRIX linker understands -LANG:*, -LIST:* and -LNO:* # so, if we see these flags be careful not to treat them like -L -L[A-Z][A-Z]*:*) case $with_gcc/$host in no/*-*-irix* | /*-*-irix*) func_append compile_command " $arg" func_append finalize_command " $arg" ;; esac continue ;; -L*) func_stripname "-L" '' "$arg" if test -z "$func_stripname_result"; then if test "$#" -gt 0; then func_fatal_error "require no space between \`-L' and \`$1'" else func_fatal_error "need path for \`-L' option" fi fi func_resolve_sysroot "$func_stripname_result" dir=$func_resolve_sysroot_result # We need an absolute path. case $dir in [\\/]* | [A-Za-z]:[\\/]*) ;; *) absdir=`cd "$dir" && pwd` test -z "$absdir" && \ func_fatal_error "cannot determine absolute directory name of \`$dir'" dir="$absdir" ;; esac case "$deplibs " in *" -L$dir "* | *" $arg "*) # Will only happen for absolute or sysroot arguments ;; *) # Preserve sysroot, but never include relative directories case $dir in [\\/]* | [A-Za-z]:[\\/]* | =*) func_append deplibs " $arg" ;; *) func_append deplibs " -L$dir" ;; esac func_append lib_search_path " $dir" ;; esac case $host in *-*-cygwin* | *-*-mingw* | *-*-pw32* | *-*-os2* | *-cegcc*) testbindir=`$ECHO "$dir" | $SED 's*/lib$*/bin*'` case :$dllsearchpath: in *":$dir:"*) ;; ::) dllsearchpath=$dir;; *) func_append dllsearchpath ":$dir";; esac case :$dllsearchpath: in *":$testbindir:"*) ;; ::) dllsearchpath=$testbindir;; *) func_append dllsearchpath ":$testbindir";; esac ;; esac continue ;; -l*) if test "X$arg" = "X-lc" || test "X$arg" = "X-lm"; then case $host in *-*-cygwin* | *-*-mingw* | *-*-pw32* | *-*-beos* | *-cegcc* | *-*-haiku*) # These systems don't actually have a C or math library (as such) continue ;; *-*-os2*) # These systems don't actually have a C library (as such) test "X$arg" = "X-lc" && continue ;; *-*-openbsd* | *-*-freebsd* | *-*-dragonfly*) # Do not include libc due to us having libc/libc_r. test "X$arg" = "X-lc" && continue ;; *-*-rhapsody* | *-*-darwin1.[012]) # Rhapsody C and math libraries are in the System framework func_append deplibs " System.ltframework" continue ;; *-*-sco3.2v5* | *-*-sco5v6*) # Causes problems with __ctype test "X$arg" = "X-lc" && continue ;; *-*-sysv4.2uw2* | *-*-sysv5* | *-*-unixware* | *-*-OpenUNIX*) # Compiler inserts libc in the correct place for threads to work test "X$arg" = "X-lc" && continue ;; esac elif test "X$arg" = "X-lc_r"; then case $host in *-*-openbsd* | *-*-freebsd* | *-*-dragonfly*) # Do not include libc_r directly, use -pthread flag. continue ;; esac fi func_append deplibs " $arg" continue ;; -module) module=yes continue ;; # Tru64 UNIX uses -model [arg] to determine the layout of C++ # classes, name mangling, and exception handling. # Darwin uses the -arch flag to determine output architecture. -model|-arch|-isysroot|--sysroot) func_append compiler_flags " $arg" func_append compile_command " $arg" func_append finalize_command " $arg" prev=xcompiler continue ;; -mt|-mthreads|-kthread|-Kthread|-pthread|-pthreads|--thread-safe \ |-threads|-fopenmp|-openmp|-mp|-xopenmp|-omp|-qsmp=*) func_append compiler_flags " $arg" func_append compile_command " $arg" func_append finalize_command " $arg" case "$new_inherited_linker_flags " in *" $arg "*) ;; * ) func_append new_inherited_linker_flags " $arg" ;; esac continue ;; -multi_module) single_module="${wl}-multi_module" continue ;; -no-fast-install) fast_install=no continue ;; -no-install) case $host in *-*-cygwin* | *-*-mingw* | *-*-pw32* | *-*-os2* | *-*-darwin* | *-cegcc*) # The PATH hackery in wrapper scripts is required on Windows # and Darwin in order for the loader to find any dlls it needs. func_warning "\`-no-install' is ignored for $host" func_warning "assuming \`-no-fast-install' instead" fast_install=no ;; *) no_install=yes ;; esac continue ;; -no-undefined) allow_undefined=no continue ;; -objectlist) prev=objectlist continue ;; -o) prev=output ;; -precious-files-regex) prev=precious_regex continue ;; -release) prev=release continue ;; -rpath) prev=rpath continue ;; -R) prev=xrpath continue ;; -R*) func_stripname '-R' '' "$arg" dir=$func_stripname_result # We need an absolute path. case $dir in [\\/]* | [A-Za-z]:[\\/]*) ;; =*) func_stripname '=' '' "$dir" dir=$lt_sysroot$func_stripname_result ;; *) func_fatal_error "only absolute run-paths are allowed" ;; esac case "$xrpath " in *" $dir "*) ;; *) func_append xrpath " $dir" ;; esac continue ;; -shared) # The effects of -shared are defined in a previous loop. continue ;; -shrext) prev=shrext continue ;; -static | -static-libtool-libs) # The effects of -static are defined in a previous loop. # We used to do the same as -all-static on platforms that # didn't have a PIC flag, but the assumption that the effects # would be equivalent was wrong. It would break on at least # Digital Unix and AIX. continue ;; -thread-safe) thread_safe=yes continue ;; -version-info) prev=vinfo continue ;; -version-number) prev=vinfo vinfo_number=yes continue ;; -weak) prev=weak continue ;; -Wc,*) func_stripname '-Wc,' '' "$arg" args=$func_stripname_result arg= save_ifs="$IFS"; IFS=',' for flag in $args; do IFS="$save_ifs" func_quote_for_eval "$flag" func_append arg " $func_quote_for_eval_result" func_append compiler_flags " $func_quote_for_eval_result" done IFS="$save_ifs" func_stripname ' ' '' "$arg" arg=$func_stripname_result ;; -Wl,*) func_stripname '-Wl,' '' "$arg" args=$func_stripname_result arg= save_ifs="$IFS"; IFS=',' for flag in $args; do IFS="$save_ifs" func_quote_for_eval "$flag" func_append arg " $wl$func_quote_for_eval_result" func_append compiler_flags " $wl$func_quote_for_eval_result" func_append linker_flags " $func_quote_for_eval_result" done IFS="$save_ifs" func_stripname ' ' '' "$arg" arg=$func_stripname_result ;; -Xcompiler) prev=xcompiler continue ;; -Xlinker) prev=xlinker continue ;; -XCClinker) prev=xcclinker continue ;; # -msg_* for osf cc -msg_*) func_quote_for_eval "$arg" arg="$func_quote_for_eval_result" ;; # Flags to be passed through unchanged, with rationale: # -64, -mips[0-9] enable 64-bit mode for the SGI compiler # -r[0-9][0-9]* specify processor for the SGI compiler # -xarch=*, -xtarget=* enable 64-bit mode for the Sun compiler # +DA*, +DD* enable 64-bit mode for the HP compiler # -q* compiler args for the IBM compiler # -m*, -t[45]*, -txscale* architecture-specific flags for GCC # -F/path path to uninstalled frameworks, gcc on darwin # -p, -pg, --coverage, -fprofile-* profiling flags for GCC # @file GCC response files # -tp=* Portland pgcc target processor selection # --sysroot=* for sysroot support # -O*, -flto*, -fwhopr*, -fuse-linker-plugin GCC link-time optimization -64|-mips[0-9]|-r[0-9][0-9]*|-xarch=*|-xtarget=*|+DA*|+DD*|-q*|-m*| \ -t[45]*|-txscale*|-p|-pg|--coverage|-fprofile-*|-F*|@*|-tp=*|--sysroot=*| \ -O*|-flto*|-fwhopr*|-fuse-linker-plugin) func_quote_for_eval "$arg" arg="$func_quote_for_eval_result" func_append compile_command " $arg" func_append finalize_command " $arg" func_append compiler_flags " $arg" continue ;; # Some other compiler flag. -* | +*) func_quote_for_eval "$arg" arg="$func_quote_for_eval_result" ;; *.$objext) # A standard object. func_append objs " $arg" ;; *.lo) # A libtool-controlled object. # Check to see that this really is a libtool object. if func_lalib_unsafe_p "$arg"; then pic_object= non_pic_object= # Read the .lo file func_source "$arg" if test -z "$pic_object" || test -z "$non_pic_object" || test "$pic_object" = none && test "$non_pic_object" = none; then func_fatal_error "cannot find name of object for \`$arg'" fi # Extract subdirectory from the argument. func_dirname "$arg" "/" "" xdir="$func_dirname_result" if test "$pic_object" != none; then # Prepend the subdirectory the object is found in. pic_object="$xdir$pic_object" if test "$prev" = dlfiles; then if test "$build_libtool_libs" = yes && test "$dlopen_support" = yes; then func_append dlfiles " $pic_object" prev= continue else # If libtool objects are unsupported, then we need to preload. prev=dlprefiles fi fi # CHECK ME: I think I busted this. -Ossama if test "$prev" = dlprefiles; then # Preload the old-style object. func_append dlprefiles " $pic_object" prev= fi # A PIC object. func_append libobjs " $pic_object" arg="$pic_object" fi # Non-PIC object. if test "$non_pic_object" != none; then # Prepend the subdirectory the object is found in. non_pic_object="$xdir$non_pic_object" # A standard non-PIC object func_append non_pic_objects " $non_pic_object" if test -z "$pic_object" || test "$pic_object" = none ; then arg="$non_pic_object" fi else # If the PIC object exists, use it instead. # $xdir was prepended to $pic_object above. non_pic_object="$pic_object" func_append non_pic_objects " $non_pic_object" fi else # Only an error if not doing a dry-run. if $opt_dry_run; then # Extract subdirectory from the argument. func_dirname "$arg" "/" "" xdir="$func_dirname_result" func_lo2o "$arg" pic_object=$xdir$objdir/$func_lo2o_result non_pic_object=$xdir$func_lo2o_result func_append libobjs " $pic_object" func_append non_pic_objects " $non_pic_object" else func_fatal_error "\`$arg' is not a valid libtool object" fi fi ;; *.$libext) # An archive. func_append deplibs " $arg" func_append old_deplibs " $arg" continue ;; *.la) # A libtool-controlled library. func_resolve_sysroot "$arg" if test "$prev" = dlfiles; then # This library was specified with -dlopen. func_append dlfiles " $func_resolve_sysroot_result" prev= elif test "$prev" = dlprefiles; then # The library was specified with -dlpreopen. func_append dlprefiles " $func_resolve_sysroot_result" prev= else func_append deplibs " $func_resolve_sysroot_result" fi continue ;; # Some other compiler argument. *) # Unknown arguments in both finalize_command and compile_command need # to be aesthetically quoted because they are evaled later. func_quote_for_eval "$arg" arg="$func_quote_for_eval_result" ;; esac # arg # Now actually substitute the argument into the commands. if test -n "$arg"; then func_append compile_command " $arg" func_append finalize_command " $arg" fi done # argument parsing loop test -n "$prev" && \ func_fatal_help "the \`$prevarg' option requires an argument" if test "$export_dynamic" = yes && test -n "$export_dynamic_flag_spec"; then eval arg=\"$export_dynamic_flag_spec\" func_append compile_command " $arg" func_append finalize_command " $arg" fi oldlibs= # calculate the name of the file, without its directory func_basename "$output" outputname="$func_basename_result" libobjs_save="$libobjs" if test -n "$shlibpath_var"; then # get the directories listed in $shlibpath_var eval shlib_search_path=\`\$ECHO \"\${$shlibpath_var}\" \| \$SED \'s/:/ /g\'\` else shlib_search_path= fi eval sys_lib_search_path=\"$sys_lib_search_path_spec\" eval sys_lib_dlsearch_path=\"$sys_lib_dlsearch_path_spec\" func_dirname "$output" "/" "" output_objdir="$func_dirname_result$objdir" func_to_tool_file "$output_objdir/" tool_output_objdir=$func_to_tool_file_result # Create the object directory. func_mkdir_p "$output_objdir" # Determine the type of output case $output in "") func_fatal_help "you must specify an output file" ;; *.$libext) linkmode=oldlib ;; *.lo | *.$objext) linkmode=obj ;; *.la) linkmode=lib ;; *) linkmode=prog ;; # Anything else should be a program. esac specialdeplibs= libs= # Find all interdependent deplibs by searching for libraries # that are linked more than once (e.g. -la -lb -la) for deplib in $deplibs; do if $opt_preserve_dup_deps ; then case "$libs " in *" $deplib "*) func_append specialdeplibs " $deplib" ;; esac fi func_append libs " $deplib" done if test "$linkmode" = lib; then libs="$predeps $libs $compiler_lib_search_path $postdeps" # Compute libraries that are listed more than once in $predeps # $postdeps and mark them as special (i.e., whose duplicates are # not to be eliminated). pre_post_deps= if $opt_duplicate_compiler_generated_deps; then for pre_post_dep in $predeps $postdeps; do case "$pre_post_deps " in *" $pre_post_dep "*) func_append specialdeplibs " $pre_post_deps" ;; esac func_append pre_post_deps " $pre_post_dep" done fi pre_post_deps= fi deplibs= newdependency_libs= newlib_search_path= need_relink=no # whether we're linking any uninstalled libtool libraries notinst_deplibs= # not-installed libtool libraries notinst_path= # paths that contain not-installed libtool libraries case $linkmode in lib) passes="conv dlpreopen link" for file in $dlfiles $dlprefiles; do case $file in *.la) ;; *) func_fatal_help "libraries can \`-dlopen' only libtool libraries: $file" ;; esac done ;; prog) compile_deplibs= finalize_deplibs= alldeplibs=no newdlfiles= newdlprefiles= passes="conv scan dlopen dlpreopen link" ;; *) passes="conv" ;; esac for pass in $passes; do # The preopen pass in lib mode reverses $deplibs; put it back here # so that -L comes before libs that need it for instance... if test "$linkmode,$pass" = "lib,link"; then ## FIXME: Find the place where the list is rebuilt in the wrong ## order, and fix it there properly tmp_deplibs= for deplib in $deplibs; do tmp_deplibs="$deplib $tmp_deplibs" done deplibs="$tmp_deplibs" fi if test "$linkmode,$pass" = "lib,link" || test "$linkmode,$pass" = "prog,scan"; then libs="$deplibs" deplibs= fi if test "$linkmode" = prog; then case $pass in dlopen) libs="$dlfiles" ;; dlpreopen) libs="$dlprefiles" ;; link) libs="$deplibs %DEPLIBS%" test "X$link_all_deplibs" != Xno && libs="$libs $dependency_libs" ;; esac fi if test "$linkmode,$pass" = "lib,dlpreopen"; then # Collect and forward deplibs of preopened libtool libs for lib in $dlprefiles; do # Ignore non-libtool-libs dependency_libs= func_resolve_sysroot "$lib" case $lib in *.la) func_source "$func_resolve_sysroot_result" ;; esac # Collect preopened libtool deplibs, except any this library # has declared as weak libs for deplib in $dependency_libs; do func_basename "$deplib" deplib_base=$func_basename_result case " $weak_libs " in *" $deplib_base "*) ;; *) func_append deplibs " $deplib" ;; esac done done libs="$dlprefiles" fi if test "$pass" = dlopen; then # Collect dlpreopened libraries save_deplibs="$deplibs" deplibs= fi for deplib in $libs; do lib= found=no case $deplib in -mt|-mthreads|-kthread|-Kthread|-pthread|-pthreads|--thread-safe \ |-threads|-fopenmp|-openmp|-mp|-xopenmp|-omp|-qsmp=*) if test "$linkmode,$pass" = "prog,link"; then compile_deplibs="$deplib $compile_deplibs" finalize_deplibs="$deplib $finalize_deplibs" else func_append compiler_flags " $deplib" if test "$linkmode" = lib ; then case "$new_inherited_linker_flags " in *" $deplib "*) ;; * ) func_append new_inherited_linker_flags " $deplib" ;; esac fi fi continue ;; -l*) if test "$linkmode" != lib && test "$linkmode" != prog; then func_warning "\`-l' is ignored for archives/objects" continue fi func_stripname '-l' '' "$deplib" name=$func_stripname_result if test "$linkmode" = lib; then searchdirs="$newlib_search_path $lib_search_path $compiler_lib_search_dirs $sys_lib_search_path $shlib_search_path" else searchdirs="$newlib_search_path $lib_search_path $sys_lib_search_path $shlib_search_path" fi for searchdir in $searchdirs; do for search_ext in .la $std_shrext .so .a; do # Search the libtool library lib="$searchdir/lib${name}${search_ext}" if test -f "$lib"; then if test "$search_ext" = ".la"; then found=yes else found=no fi break 2 fi done done if test "$found" != yes; then # deplib doesn't seem to be a libtool library if test "$linkmode,$pass" = "prog,link"; then compile_deplibs="$deplib $compile_deplibs" finalize_deplibs="$deplib $finalize_deplibs" else deplibs="$deplib $deplibs" test "$linkmode" = lib && newdependency_libs="$deplib $newdependency_libs" fi continue else # deplib is a libtool library # If $allow_libtool_libs_with_static_runtimes && $deplib is a stdlib, # We need to do some special things here, and not later. if test "X$allow_libtool_libs_with_static_runtimes" = "Xyes" ; then case " $predeps $postdeps " in *" $deplib "*) if func_lalib_p "$lib"; then library_names= old_library= func_source "$lib" for l in $old_library $library_names; do ll="$l" done if test "X$ll" = "X$old_library" ; then # only static version available found=no func_dirname "$lib" "" "." ladir="$func_dirname_result" lib=$ladir/$old_library if test "$linkmode,$pass" = "prog,link"; then compile_deplibs="$deplib $compile_deplibs" finalize_deplibs="$deplib $finalize_deplibs" else deplibs="$deplib $deplibs" test "$linkmode" = lib && newdependency_libs="$deplib $newdependency_libs" fi continue fi fi ;; *) ;; esac fi fi ;; # -l *.ltframework) if test "$linkmode,$pass" = "prog,link"; then compile_deplibs="$deplib $compile_deplibs" finalize_deplibs="$deplib $finalize_deplibs" else deplibs="$deplib $deplibs" if test "$linkmode" = lib ; then case "$new_inherited_linker_flags " in *" $deplib "*) ;; * ) func_append new_inherited_linker_flags " $deplib" ;; esac fi fi continue ;; -L*) case $linkmode in lib) deplibs="$deplib $deplibs" test "$pass" = conv && continue newdependency_libs="$deplib $newdependency_libs" func_stripname '-L' '' "$deplib" func_resolve_sysroot "$func_stripname_result" func_append newlib_search_path " $func_resolve_sysroot_result" ;; prog) if test "$pass" = conv; then deplibs="$deplib $deplibs" continue fi if test "$pass" = scan; then deplibs="$deplib $deplibs" else compile_deplibs="$deplib $compile_deplibs" finalize_deplibs="$deplib $finalize_deplibs" fi func_stripname '-L' '' "$deplib" func_resolve_sysroot "$func_stripname_result" func_append newlib_search_path " $func_resolve_sysroot_result" ;; *) func_warning "\`-L' is ignored for archives/objects" ;; esac # linkmode continue ;; # -L -R*) if test "$pass" = link; then func_stripname '-R' '' "$deplib" func_resolve_sysroot "$func_stripname_result" dir=$func_resolve_sysroot_result # Make sure the xrpath contains only unique directories. case "$xrpath " in *" $dir "*) ;; *) func_append xrpath " $dir" ;; esac fi deplibs="$deplib $deplibs" continue ;; *.la) func_resolve_sysroot "$deplib" lib=$func_resolve_sysroot_result ;; *.$libext) if test "$pass" = conv; then deplibs="$deplib $deplibs" continue fi case $linkmode in lib) # Linking convenience modules into shared libraries is allowed, # but linking other static libraries is non-portable. case " $dlpreconveniencelibs " in *" $deplib "*) ;; *) valid_a_lib=no case $deplibs_check_method in match_pattern*) set dummy $deplibs_check_method; shift match_pattern_regex=`expr "$deplibs_check_method" : "$1 \(.*\)"` if eval "\$ECHO \"$deplib\"" 2>/dev/null | $SED 10q \ | $EGREP "$match_pattern_regex" > /dev/null; then valid_a_lib=yes fi ;; pass_all) valid_a_lib=yes ;; esac if test "$valid_a_lib" != yes; then echo $ECHO "*** Warning: Trying to link with static lib archive $deplib." echo "*** I have the capability to make that library automatically link in when" echo "*** you link to this library. But I can only do this if you have a" echo "*** shared version of the library, which you do not appear to have" echo "*** because the file extensions .$libext of this argument makes me believe" echo "*** that it is just a static archive that I should not use here." else echo $ECHO "*** Warning: Linking the shared library $output against the" $ECHO "*** static library $deplib is not portable!" deplibs="$deplib $deplibs" fi ;; esac continue ;; prog) if test "$pass" != link; then deplibs="$deplib $deplibs" else compile_deplibs="$deplib $compile_deplibs" finalize_deplibs="$deplib $finalize_deplibs" fi continue ;; esac # linkmode ;; # *.$libext *.lo | *.$objext) if test "$pass" = conv; then deplibs="$deplib $deplibs" elif test "$linkmode" = prog; then if test "$pass" = dlpreopen || test "$dlopen_support" != yes || test "$build_libtool_libs" = no; then # If there is no dlopen support or we're linking statically, # we need to preload. func_append newdlprefiles " $deplib" compile_deplibs="$deplib $compile_deplibs" finalize_deplibs="$deplib $finalize_deplibs" else func_append newdlfiles " $deplib" fi fi continue ;; %DEPLIBS%) alldeplibs=yes continue ;; esac # case $deplib if test "$found" = yes || test -f "$lib"; then : else func_fatal_error "cannot find the library \`$lib' or unhandled argument \`$deplib'" fi # Check to see that this really is a libtool archive. func_lalib_unsafe_p "$lib" \ || func_fatal_error "\`$lib' is not a valid libtool archive" func_dirname "$lib" "" "." ladir="$func_dirname_result" dlname= dlopen= dlpreopen= libdir= library_names= old_library= inherited_linker_flags= # If the library was installed with an old release of libtool, # it will not redefine variables installed, or shouldnotlink installed=yes shouldnotlink=no avoidtemprpath= # Read the .la file func_source "$lib" # Convert "-framework foo" to "foo.ltframework" if test -n "$inherited_linker_flags"; then tmp_inherited_linker_flags=`$ECHO "$inherited_linker_flags" | $SED 's/-framework \([^ $]*\)/\1.ltframework/g'` for tmp_inherited_linker_flag in $tmp_inherited_linker_flags; do case " $new_inherited_linker_flags " in *" $tmp_inherited_linker_flag "*) ;; *) func_append new_inherited_linker_flags " $tmp_inherited_linker_flag";; esac done fi dependency_libs=`$ECHO " $dependency_libs" | $SED 's% \([^ $]*\).ltframework% -framework \1%g'` if test "$linkmode,$pass" = "lib,link" || test "$linkmode,$pass" = "prog,scan" || { test "$linkmode" != prog && test "$linkmode" != lib; }; then test -n "$dlopen" && func_append dlfiles " $dlopen" test -n "$dlpreopen" && func_append dlprefiles " $dlpreopen" fi if test "$pass" = conv; then # Only check for convenience libraries deplibs="$lib $deplibs" if test -z "$libdir"; then if test -z "$old_library"; then func_fatal_error "cannot find name of link library for \`$lib'" fi # It is a libtool convenience library, so add in its objects. func_append convenience " $ladir/$objdir/$old_library" func_append old_convenience " $ladir/$objdir/$old_library" tmp_libs= for deplib in $dependency_libs; do deplibs="$deplib $deplibs" if $opt_preserve_dup_deps ; then case "$tmp_libs " in *" $deplib "*) func_append specialdeplibs " $deplib" ;; esac fi func_append tmp_libs " $deplib" done elif test "$linkmode" != prog && test "$linkmode" != lib; then func_fatal_error "\`$lib' is not a convenience library" fi continue fi # $pass = conv # Get the name of the library we link against. linklib= if test -n "$old_library" && { test "$prefer_static_libs" = yes || test "$prefer_static_libs,$installed" = "built,no"; }; then linklib=$old_library else for l in $old_library $library_names; do linklib="$l" done fi if test -z "$linklib"; then func_fatal_error "cannot find name of link library for \`$lib'" fi # This library was specified with -dlopen. if test "$pass" = dlopen; then if test -z "$libdir"; then func_fatal_error "cannot -dlopen a convenience library: \`$lib'" fi if test -z "$dlname" || test "$dlopen_support" != yes || test "$build_libtool_libs" = no; then # If there is no dlname, no dlopen support or we're linking # statically, we need to preload. We also need to preload any # dependent libraries so libltdl's deplib preloader doesn't # bomb out in the load deplibs phase. func_append dlprefiles " $lib $dependency_libs" else func_append newdlfiles " $lib" fi continue fi # $pass = dlopen # We need an absolute path. case $ladir in [\\/]* | [A-Za-z]:[\\/]*) abs_ladir="$ladir" ;; *) abs_ladir=`cd "$ladir" && pwd` if test -z "$abs_ladir"; then func_warning "cannot determine absolute directory name of \`$ladir'" func_warning "passing it literally to the linker, although it might fail" abs_ladir="$ladir" fi ;; esac func_basename "$lib" laname="$func_basename_result" # Find the relevant object directory and library name. if test "X$installed" = Xyes; then if test ! -f "$lt_sysroot$libdir/$linklib" && test -f "$abs_ladir/$linklib"; then func_warning "library \`$lib' was moved." dir="$ladir" absdir="$abs_ladir" libdir="$abs_ladir" else dir="$lt_sysroot$libdir" absdir="$lt_sysroot$libdir" fi test "X$hardcode_automatic" = Xyes && avoidtemprpath=yes else if test ! -f "$ladir/$objdir/$linklib" && test -f "$abs_ladir/$linklib"; then dir="$ladir" absdir="$abs_ladir" # Remove this search path later func_append notinst_path " $abs_ladir" else dir="$ladir/$objdir" absdir="$abs_ladir/$objdir" # Remove this search path later func_append notinst_path " $abs_ladir" fi fi # $installed = yes func_stripname 'lib' '.la' "$laname" name=$func_stripname_result # This library was specified with -dlpreopen. if test "$pass" = dlpreopen; then if test -z "$libdir" && test "$linkmode" = prog; then func_fatal_error "only libraries may -dlpreopen a convenience library: \`$lib'" fi case "$host" in # special handling for platforms with PE-DLLs. *cygwin* | *mingw* | *cegcc* ) # Linker will automatically link against shared library if both # static and shared are present. Therefore, ensure we extract # symbols from the import library if a shared library is present # (otherwise, the dlopen module name will be incorrect). We do # this by putting the import library name into $newdlprefiles. # We recover the dlopen module name by 'saving' the la file # name in a special purpose variable, and (later) extracting the # dlname from the la file. if test -n "$dlname"; then func_tr_sh "$dir/$linklib" eval "libfile_$func_tr_sh_result=\$abs_ladir/\$laname" func_append newdlprefiles " $dir/$linklib" else func_append newdlprefiles " $dir/$old_library" # Keep a list of preopened convenience libraries to check # that they are being used correctly in the link pass. test -z "$libdir" && \ func_append dlpreconveniencelibs " $dir/$old_library" fi ;; * ) # Prefer using a static library (so that no silly _DYNAMIC symbols # are required to link). if test -n "$old_library"; then func_append newdlprefiles " $dir/$old_library" # Keep a list of preopened convenience libraries to check # that they are being used correctly in the link pass. test -z "$libdir" && \ func_append dlpreconveniencelibs " $dir/$old_library" # Otherwise, use the dlname, so that lt_dlopen finds it. elif test -n "$dlname"; then func_append newdlprefiles " $dir/$dlname" else func_append newdlprefiles " $dir/$linklib" fi ;; esac fi # $pass = dlpreopen if test -z "$libdir"; then # Link the convenience library if test "$linkmode" = lib; then deplibs="$dir/$old_library $deplibs" elif test "$linkmode,$pass" = "prog,link"; then compile_deplibs="$dir/$old_library $compile_deplibs" finalize_deplibs="$dir/$old_library $finalize_deplibs" else deplibs="$lib $deplibs" # used for prog,scan pass fi continue fi if test "$linkmode" = prog && test "$pass" != link; then func_append newlib_search_path " $ladir" deplibs="$lib $deplibs" linkalldeplibs=no if test "$link_all_deplibs" != no || test -z "$library_names" || test "$build_libtool_libs" = no; then linkalldeplibs=yes fi tmp_libs= for deplib in $dependency_libs; do case $deplib in -L*) func_stripname '-L' '' "$deplib" func_resolve_sysroot "$func_stripname_result" func_append newlib_search_path " $func_resolve_sysroot_result" ;; esac # Need to link against all dependency_libs? if test "$linkalldeplibs" = yes; then deplibs="$deplib $deplibs" else # Need to hardcode shared library paths # or/and link against static libraries newdependency_libs="$deplib $newdependency_libs" fi if $opt_preserve_dup_deps ; then case "$tmp_libs " in *" $deplib "*) func_append specialdeplibs " $deplib" ;; esac fi func_append tmp_libs " $deplib" done # for deplib continue fi # $linkmode = prog... if test "$linkmode,$pass" = "prog,link"; then if test -n "$library_names" && { { test "$prefer_static_libs" = no || test "$prefer_static_libs,$installed" = "built,yes"; } || test -z "$old_library"; }; then # We need to hardcode the library path if test -n "$shlibpath_var" && test -z "$avoidtemprpath" ; then # Make sure the rpath contains only unique directories. case "$temp_rpath:" in *"$absdir:"*) ;; *) func_append temp_rpath "$absdir:" ;; esac fi # Hardcode the library path. # Skip directories that are in the system default run-time # search path. case " $sys_lib_dlsearch_path " in *" $absdir "*) ;; *) case "$compile_rpath " in *" $absdir "*) ;; *) func_append compile_rpath " $absdir" ;; esac ;; esac case " $sys_lib_dlsearch_path " in *" $libdir "*) ;; *) case "$finalize_rpath " in *" $libdir "*) ;; *) func_append finalize_rpath " $libdir" ;; esac ;; esac fi # $linkmode,$pass = prog,link... if test "$alldeplibs" = yes && { test "$deplibs_check_method" = pass_all || { test "$build_libtool_libs" = yes && test -n "$library_names"; }; }; then # We only need to search for static libraries continue fi fi link_static=no # Whether the deplib will be linked statically use_static_libs=$prefer_static_libs if test "$use_static_libs" = built && test "$installed" = yes; then use_static_libs=no fi if test -n "$library_names" && { test "$use_static_libs" = no || test -z "$old_library"; }; then case $host in *cygwin* | *mingw* | *cegcc*) # No point in relinking DLLs because paths are not encoded func_append notinst_deplibs " $lib" need_relink=no ;; *) if test "$installed" = no; then func_append notinst_deplibs " $lib" need_relink=yes fi ;; esac # This is a shared library # Warn about portability, can't link against -module's on some # systems (darwin). Don't bleat about dlopened modules though! dlopenmodule="" for dlpremoduletest in $dlprefiles; do if test "X$dlpremoduletest" = "X$lib"; then dlopenmodule="$dlpremoduletest" break fi done if test -z "$dlopenmodule" && test "$shouldnotlink" = yes && test "$pass" = link; then echo if test "$linkmode" = prog; then $ECHO "*** Warning: Linking the executable $output against the loadable module" else $ECHO "*** Warning: Linking the shared library $output against the loadable module" fi $ECHO "*** $linklib is not portable!" fi if test "$linkmode" = lib && test "$hardcode_into_libs" = yes; then # Hardcode the library path. # Skip directories that are in the system default run-time # search path. case " $sys_lib_dlsearch_path " in *" $absdir "*) ;; *) case "$compile_rpath " in *" $absdir "*) ;; *) func_append compile_rpath " $absdir" ;; esac ;; esac case " $sys_lib_dlsearch_path " in *" $libdir "*) ;; *) case "$finalize_rpath " in *" $libdir "*) ;; *) func_append finalize_rpath " $libdir" ;; esac ;; esac fi if test -n "$old_archive_from_expsyms_cmds"; then # figure out the soname set dummy $library_names shift realname="$1" shift libname=`eval "\\$ECHO \"$libname_spec\""` # use dlname if we got it. it's perfectly good, no? if test -n "$dlname"; then soname="$dlname" elif test -n "$soname_spec"; then # bleh windows case $host in *cygwin* | mingw* | *cegcc*) func_arith $current - $age major=$func_arith_result versuffix="-$major" ;; esac eval soname=\"$soname_spec\" else soname="$realname" fi # Make a new name for the extract_expsyms_cmds to use soroot="$soname" func_basename "$soroot" soname="$func_basename_result" func_stripname 'lib' '.dll' "$soname" newlib=libimp-$func_stripname_result.a # If the library has no export list, then create one now if test -f "$output_objdir/$soname-def"; then : else func_verbose "extracting exported symbol list from \`$soname'" func_execute_cmds "$extract_expsyms_cmds" 'exit $?' fi # Create $newlib if test -f "$output_objdir/$newlib"; then :; else func_verbose "generating import library for \`$soname'" func_execute_cmds "$old_archive_from_expsyms_cmds" 'exit $?' fi # make sure the library variables are pointing to the new library dir=$output_objdir linklib=$newlib fi # test -n "$old_archive_from_expsyms_cmds" if test "$linkmode" = prog || test "$opt_mode" != relink; then add_shlibpath= add_dir= add= lib_linked=yes case $hardcode_action in immediate | unsupported) if test "$hardcode_direct" = no; then add="$dir/$linklib" case $host in *-*-sco3.2v5.0.[024]*) add_dir="-L$dir" ;; *-*-sysv4*uw2*) add_dir="-L$dir" ;; *-*-sysv5OpenUNIX* | *-*-sysv5UnixWare7.[01].[10]* | \ *-*-unixware7*) add_dir="-L$dir" ;; *-*-darwin* ) # if the lib is a (non-dlopened) module then we can not # link against it, someone is ignoring the earlier warnings if /usr/bin/file -L $add 2> /dev/null | $GREP ": [^:]* bundle" >/dev/null ; then if test "X$dlopenmodule" != "X$lib"; then $ECHO "*** Warning: lib $linklib is a module, not a shared library" if test -z "$old_library" ; then echo echo "*** And there doesn't seem to be a static archive available" echo "*** The link will probably fail, sorry" else add="$dir/$old_library" fi elif test -n "$old_library"; then add="$dir/$old_library" fi fi esac elif test "$hardcode_minus_L" = no; then case $host in *-*-sunos*) add_shlibpath="$dir" ;; esac add_dir="-L$dir" add="-l$name" elif test "$hardcode_shlibpath_var" = no; then add_shlibpath="$dir" add="-l$name" else lib_linked=no fi ;; relink) if test "$hardcode_direct" = yes && test "$hardcode_direct_absolute" = no; then add="$dir/$linklib" elif test "$hardcode_minus_L" = yes; then add_dir="-L$absdir" # Try looking first in the location we're being installed to. if test -n "$inst_prefix_dir"; then case $libdir in [\\/]*) func_append add_dir " -L$inst_prefix_dir$libdir" ;; esac fi add="-l$name" elif test "$hardcode_shlibpath_var" = yes; then add_shlibpath="$dir" add="-l$name" else lib_linked=no fi ;; *) lib_linked=no ;; esac if test "$lib_linked" != yes; then func_fatal_configuration "unsupported hardcode properties" fi if test -n "$add_shlibpath"; then case :$compile_shlibpath: in *":$add_shlibpath:"*) ;; *) func_append compile_shlibpath "$add_shlibpath:" ;; esac fi if test "$linkmode" = prog; then test -n "$add_dir" && compile_deplibs="$add_dir $compile_deplibs" test -n "$add" && compile_deplibs="$add $compile_deplibs" else test -n "$add_dir" && deplibs="$add_dir $deplibs" test -n "$add" && deplibs="$add $deplibs" if test "$hardcode_direct" != yes && test "$hardcode_minus_L" != yes && test "$hardcode_shlibpath_var" = yes; then case :$finalize_shlibpath: in *":$libdir:"*) ;; *) func_append finalize_shlibpath "$libdir:" ;; esac fi fi fi if test "$linkmode" = prog || test "$opt_mode" = relink; then add_shlibpath= add_dir= add= # Finalize command for both is simple: just hardcode it. if test "$hardcode_direct" = yes && test "$hardcode_direct_absolute" = no; then add="$libdir/$linklib" elif test "$hardcode_minus_L" = yes; then add_dir="-L$libdir" add="-l$name" elif test "$hardcode_shlibpath_var" = yes; then case :$finalize_shlibpath: in *":$libdir:"*) ;; *) func_append finalize_shlibpath "$libdir:" ;; esac add="-l$name" elif test "$hardcode_automatic" = yes; then if test -n "$inst_prefix_dir" && test -f "$inst_prefix_dir$libdir/$linklib" ; then add="$inst_prefix_dir$libdir/$linklib" else add="$libdir/$linklib" fi else # We cannot seem to hardcode it, guess we'll fake it. add_dir="-L$libdir" # Try looking first in the location we're being installed to. if test -n "$inst_prefix_dir"; then case $libdir in [\\/]*) func_append add_dir " -L$inst_prefix_dir$libdir" ;; esac fi add="-l$name" fi if test "$linkmode" = prog; then test -n "$add_dir" && finalize_deplibs="$add_dir $finalize_deplibs" test -n "$add" && finalize_deplibs="$add $finalize_deplibs" else test -n "$add_dir" && deplibs="$add_dir $deplibs" test -n "$add" && deplibs="$add $deplibs" fi fi elif test "$linkmode" = prog; then # Here we assume that one of hardcode_direct or hardcode_minus_L # is not unsupported. This is valid on all known static and # shared platforms. if test "$hardcode_direct" != unsupported; then test -n "$old_library" && linklib="$old_library" compile_deplibs="$dir/$linklib $compile_deplibs" finalize_deplibs="$dir/$linklib $finalize_deplibs" else compile_deplibs="-l$name -L$dir $compile_deplibs" finalize_deplibs="-l$name -L$dir $finalize_deplibs" fi elif test "$build_libtool_libs" = yes; then # Not a shared library if test "$deplibs_check_method" != pass_all; then # We're trying link a shared library against a static one # but the system doesn't support it. # Just print a warning and add the library to dependency_libs so # that the program can be linked against the static library. echo $ECHO "*** Warning: This system can not link to static lib archive $lib." echo "*** I have the capability to make that library automatically link in when" echo "*** you link to this library. But I can only do this if you have a" echo "*** shared version of the library, which you do not appear to have." if test "$module" = yes; then echo "*** But as you try to build a module library, libtool will still create " echo "*** a static module, that should work as long as the dlopening application" echo "*** is linked with the -dlopen flag to resolve symbols at runtime." if test -z "$global_symbol_pipe"; then echo echo "*** However, this would only work if libtool was able to extract symbol" echo "*** lists from a program, using \`nm' or equivalent, but libtool could" echo "*** not find such a program. So, this module is probably useless." echo "*** \`nm' from GNU binutils and a full rebuild may help." fi if test "$build_old_libs" = no; then build_libtool_libs=module build_old_libs=yes else build_libtool_libs=no fi fi else deplibs="$dir/$old_library $deplibs" link_static=yes fi fi # link shared/static library? if test "$linkmode" = lib; then if test -n "$dependency_libs" && { test "$hardcode_into_libs" != yes || test "$build_old_libs" = yes || test "$link_static" = yes; }; then # Extract -R from dependency_libs temp_deplibs= for libdir in $dependency_libs; do case $libdir in -R*) func_stripname '-R' '' "$libdir" temp_xrpath=$func_stripname_result case " $xrpath " in *" $temp_xrpath "*) ;; *) func_append xrpath " $temp_xrpath";; esac;; *) func_append temp_deplibs " $libdir";; esac done dependency_libs="$temp_deplibs" fi func_append newlib_search_path " $absdir" # Link against this library test "$link_static" = no && newdependency_libs="$abs_ladir/$laname $newdependency_libs" # ... and its dependency_libs tmp_libs= for deplib in $dependency_libs; do newdependency_libs="$deplib $newdependency_libs" case $deplib in -L*) func_stripname '-L' '' "$deplib" func_resolve_sysroot "$func_stripname_result";; *) func_resolve_sysroot "$deplib" ;; esac if $opt_preserve_dup_deps ; then case "$tmp_libs " in *" $func_resolve_sysroot_result "*) func_append specialdeplibs " $func_resolve_sysroot_result" ;; esac fi func_append tmp_libs " $func_resolve_sysroot_result" done if test "$link_all_deplibs" != no; then # Add the search paths of all dependency libraries for deplib in $dependency_libs; do path= case $deplib in -L*) path="$deplib" ;; *.la) func_resolve_sysroot "$deplib" deplib=$func_resolve_sysroot_result func_dirname "$deplib" "" "." dir=$func_dirname_result # We need an absolute path. case $dir in [\\/]* | [A-Za-z]:[\\/]*) absdir="$dir" ;; *) absdir=`cd "$dir" && pwd` if test -z "$absdir"; then func_warning "cannot determine absolute directory name of \`$dir'" absdir="$dir" fi ;; esac if $GREP "^installed=no" $deplib > /dev/null; then case $host in *-*-darwin*) depdepl= eval deplibrary_names=`${SED} -n -e 's/^library_names=\(.*\)$/\1/p' $deplib` if test -n "$deplibrary_names" ; then for tmp in $deplibrary_names ; do depdepl=$tmp done if test -f "$absdir/$objdir/$depdepl" ; then depdepl="$absdir/$objdir/$depdepl" darwin_install_name=`${OTOOL} -L $depdepl | awk '{if (NR == 2) {print $1;exit}}'` if test -z "$darwin_install_name"; then darwin_install_name=`${OTOOL64} -L $depdepl | awk '{if (NR == 2) {print $1;exit}}'` fi func_append compiler_flags " ${wl}-dylib_file ${wl}${darwin_install_name}:${depdepl}" func_append linker_flags " -dylib_file ${darwin_install_name}:${depdepl}" path= fi fi ;; *) path="-L$absdir/$objdir" ;; esac else eval libdir=`${SED} -n -e 's/^libdir=\(.*\)$/\1/p' $deplib` test -z "$libdir" && \ func_fatal_error "\`$deplib' is not a valid libtool archive" test "$absdir" != "$libdir" && \ func_warning "\`$deplib' seems to be moved" path="-L$absdir" fi ;; esac case " $deplibs " in *" $path "*) ;; *) deplibs="$path $deplibs" ;; esac done fi # link_all_deplibs != no fi # linkmode = lib done # for deplib in $libs if test "$pass" = link; then if test "$linkmode" = "prog"; then compile_deplibs="$new_inherited_linker_flags $compile_deplibs" finalize_deplibs="$new_inherited_linker_flags $finalize_deplibs" else compiler_flags="$compiler_flags "`$ECHO " $new_inherited_linker_flags" | $SED 's% \([^ $]*\).ltframework% -framework \1%g'` fi fi dependency_libs="$newdependency_libs" if test "$pass" = dlpreopen; then # Link the dlpreopened libraries before other libraries for deplib in $save_deplibs; do deplibs="$deplib $deplibs" done fi if test "$pass" != dlopen; then if test "$pass" != conv; then # Make sure lib_search_path contains only unique directories. lib_search_path= for dir in $newlib_search_path; do case "$lib_search_path " in *" $dir "*) ;; *) func_append lib_search_path " $dir" ;; esac done newlib_search_path= fi if test "$linkmode,$pass" != "prog,link"; then vars="deplibs" else vars="compile_deplibs finalize_deplibs" fi for var in $vars dependency_libs; do # Add libraries to $var in reverse order eval tmp_libs=\"\$$var\" new_libs= for deplib in $tmp_libs; do # FIXME: Pedantically, this is the right thing to do, so # that some nasty dependency loop isn't accidentally # broken: #new_libs="$deplib $new_libs" # Pragmatically, this seems to cause very few problems in # practice: case $deplib in -L*) new_libs="$deplib $new_libs" ;; -R*) ;; *) # And here is the reason: when a library appears more # than once as an explicit dependence of a library, or # is implicitly linked in more than once by the # compiler, it is considered special, and multiple # occurrences thereof are not removed. Compare this # with having the same library being listed as a # dependency of multiple other libraries: in this case, # we know (pedantically, we assume) the library does not # need to be listed more than once, so we keep only the # last copy. This is not always right, but it is rare # enough that we require users that really mean to play # such unportable linking tricks to link the library # using -Wl,-lname, so that libtool does not consider it # for duplicate removal. case " $specialdeplibs " in *" $deplib "*) new_libs="$deplib $new_libs" ;; *) case " $new_libs " in *" $deplib "*) ;; *) new_libs="$deplib $new_libs" ;; esac ;; esac ;; esac done tmp_libs= for deplib in $new_libs; do case $deplib in -L*) case " $tmp_libs " in *" $deplib "*) ;; *) func_append tmp_libs " $deplib" ;; esac ;; *) func_append tmp_libs " $deplib" ;; esac done eval $var=\"$tmp_libs\" done # for var fi # Last step: remove runtime libs from dependency_libs # (they stay in deplibs) tmp_libs= for i in $dependency_libs ; do case " $predeps $postdeps $compiler_lib_search_path " in *" $i "*) i="" ;; esac if test -n "$i" ; then func_append tmp_libs " $i" fi done dependency_libs=$tmp_libs done # for pass if test "$linkmode" = prog; then dlfiles="$newdlfiles" fi if test "$linkmode" = prog || test "$linkmode" = lib; then dlprefiles="$newdlprefiles" fi case $linkmode in oldlib) if test -n "$dlfiles$dlprefiles" || test "$dlself" != no; then func_warning "\`-dlopen' is ignored for archives" fi case " $deplibs" in *\ -l* | *\ -L*) func_warning "\`-l' and \`-L' are ignored for archives" ;; esac test -n "$rpath" && \ func_warning "\`-rpath' is ignored for archives" test -n "$xrpath" && \ func_warning "\`-R' is ignored for archives" test -n "$vinfo" && \ func_warning "\`-version-info/-version-number' is ignored for archives" test -n "$release" && \ func_warning "\`-release' is ignored for archives" test -n "$export_symbols$export_symbols_regex" && \ func_warning "\`-export-symbols' is ignored for archives" # Now set the variables for building old libraries. build_libtool_libs=no oldlibs="$output" func_append objs "$old_deplibs" ;; lib) # Make sure we only generate libraries of the form `libNAME.la'. case $outputname in lib*) func_stripname 'lib' '.la' "$outputname" name=$func_stripname_result eval shared_ext=\"$shrext_cmds\" eval libname=\"$libname_spec\" ;; *) test "$module" = no && \ func_fatal_help "libtool library \`$output' must begin with \`lib'" if test "$need_lib_prefix" != no; then # Add the "lib" prefix for modules if required func_stripname '' '.la' "$outputname" name=$func_stripname_result eval shared_ext=\"$shrext_cmds\" eval libname=\"$libname_spec\" else func_stripname '' '.la' "$outputname" libname=$func_stripname_result fi ;; esac if test -n "$objs"; then if test "$deplibs_check_method" != pass_all; then func_fatal_error "cannot build libtool library \`$output' from non-libtool objects on this host:$objs" else echo $ECHO "*** Warning: Linking the shared library $output against the non-libtool" $ECHO "*** objects $objs is not portable!" func_append libobjs " $objs" fi fi test "$dlself" != no && \ func_warning "\`-dlopen self' is ignored for libtool libraries" set dummy $rpath shift test "$#" -gt 1 && \ func_warning "ignoring multiple \`-rpath's for a libtool library" install_libdir="$1" oldlibs= if test -z "$rpath"; then if test "$build_libtool_libs" = yes; then # Building a libtool convenience library. # Some compilers have problems with a `.al' extension so # convenience libraries should have the same extension an # archive normally would. oldlibs="$output_objdir/$libname.$libext $oldlibs" build_libtool_libs=convenience build_old_libs=yes fi test -n "$vinfo" && \ func_warning "\`-version-info/-version-number' is ignored for convenience libraries" test -n "$release" && \ func_warning "\`-release' is ignored for convenience libraries" else # Parse the version information argument. save_ifs="$IFS"; IFS=':' set dummy $vinfo 0 0 0 shift IFS="$save_ifs" test -n "$7" && \ func_fatal_help "too many parameters to \`-version-info'" # convert absolute version numbers to libtool ages # this retains compatibility with .la files and attempts # to make the code below a bit more comprehensible case $vinfo_number in yes) number_major="$1" number_minor="$2" number_revision="$3" # # There are really only two kinds -- those that # use the current revision as the major version # and those that subtract age and use age as # a minor version. But, then there is irix # which has an extra 1 added just for fun # case $version_type in # correct linux to gnu/linux during the next big refactor darwin|linux|osf|windows|none) func_arith $number_major + $number_minor current=$func_arith_result age="$number_minor" revision="$number_revision" ;; freebsd-aout|freebsd-elf|qnx|sunos) current="$number_major" revision="$number_minor" age="0" ;; irix|nonstopux) func_arith $number_major + $number_minor current=$func_arith_result age="$number_minor" revision="$number_minor" lt_irix_increment=no ;; *) func_fatal_configuration "$modename: unknown library version type \`$version_type'" ;; esac ;; no) current="$1" revision="$2" age="$3" ;; esac # Check that each of the things are valid numbers. case $current in 0|[1-9]|[1-9][0-9]|[1-9][0-9][0-9]|[1-9][0-9][0-9][0-9]|[1-9][0-9][0-9][0-9][0-9]) ;; *) func_error "CURRENT \`$current' must be a nonnegative integer" func_fatal_error "\`$vinfo' is not valid version information" ;; esac case $revision in 0|[1-9]|[1-9][0-9]|[1-9][0-9][0-9]|[1-9][0-9][0-9][0-9]|[1-9][0-9][0-9][0-9][0-9]) ;; *) func_error "REVISION \`$revision' must be a nonnegative integer" func_fatal_error "\`$vinfo' is not valid version information" ;; esac case $age in 0|[1-9]|[1-9][0-9]|[1-9][0-9][0-9]|[1-9][0-9][0-9][0-9]|[1-9][0-9][0-9][0-9][0-9]) ;; *) func_error "AGE \`$age' must be a nonnegative integer" func_fatal_error "\`$vinfo' is not valid version information" ;; esac if test "$age" -gt "$current"; then func_error "AGE \`$age' is greater than the current interface number \`$current'" func_fatal_error "\`$vinfo' is not valid version information" fi # Calculate the version variables. major= versuffix= verstring= case $version_type in none) ;; darwin) # Like Linux, but with the current version available in # verstring for coding it into the library header func_arith $current - $age major=.$func_arith_result versuffix="$major.$age.$revision" # Darwin ld doesn't like 0 for these options... func_arith $current + 1 minor_current=$func_arith_result xlcverstring="${wl}-compatibility_version ${wl}$minor_current ${wl}-current_version ${wl}$minor_current.$revision" verstring="-compatibility_version $minor_current -current_version $minor_current.$revision" ;; freebsd-aout) major=".$current" versuffix=".$current.$revision"; ;; freebsd-elf) major=".$current" versuffix=".$current" ;; irix | nonstopux) if test "X$lt_irix_increment" = "Xno"; then func_arith $current - $age else func_arith $current - $age + 1 fi major=$func_arith_result case $version_type in nonstopux) verstring_prefix=nonstopux ;; *) verstring_prefix=sgi ;; esac verstring="$verstring_prefix$major.$revision" # Add in all the interfaces that we are compatible with. loop=$revision while test "$loop" -ne 0; do func_arith $revision - $loop iface=$func_arith_result func_arith $loop - 1 loop=$func_arith_result verstring="$verstring_prefix$major.$iface:$verstring" done # Before this point, $major must not contain `.'. major=.$major versuffix="$major.$revision" ;; linux) # correct to gnu/linux during the next big refactor func_arith $current - $age major=.$func_arith_result versuffix="$major.$age.$revision" ;; osf) func_arith $current - $age major=.$func_arith_result versuffix=".$current.$age.$revision" verstring="$current.$age.$revision" # Add in all the interfaces that we are compatible with. loop=$age while test "$loop" -ne 0; do func_arith $current - $loop iface=$func_arith_result func_arith $loop - 1 loop=$func_arith_result verstring="$verstring:${iface}.0" done # Make executables depend on our current version. func_append verstring ":${current}.0" ;; qnx) major=".$current" versuffix=".$current" ;; sunos) major=".$current" versuffix=".$current.$revision" ;; windows) # Use '-' rather than '.', since we only want one # extension on DOS 8.3 filesystems. func_arith $current - $age major=$func_arith_result versuffix="-$major" ;; *) func_fatal_configuration "unknown library version type \`$version_type'" ;; esac # Clear the version info if we defaulted, and they specified a release. if test -z "$vinfo" && test -n "$release"; then major= case $version_type in darwin) # we can't check for "0.0" in archive_cmds due to quoting # problems, so we reset it completely verstring= ;; *) verstring="0.0" ;; esac if test "$need_version" = no; then versuffix= else versuffix=".0.0" fi fi # Remove version info from name if versioning should be avoided if test "$avoid_version" = yes && test "$need_version" = no; then major= versuffix= verstring="" fi # Check to see if the archive will have undefined symbols. if test "$allow_undefined" = yes; then if test "$allow_undefined_flag" = unsupported; then func_warning "undefined symbols not allowed in $host shared libraries" build_libtool_libs=no build_old_libs=yes fi else # Don't allow undefined symbols. allow_undefined_flag="$no_undefined_flag" fi fi func_generate_dlsyms "$libname" "$libname" "yes" func_append libobjs " $symfileobj" test "X$libobjs" = "X " && libobjs= if test "$opt_mode" != relink; then # Remove our outputs, but don't remove object files since they # may have been created when compiling PIC objects. removelist= tempremovelist=`$ECHO "$output_objdir/*"` for p in $tempremovelist; do case $p in *.$objext | *.gcno) ;; $output_objdir/$outputname | $output_objdir/$libname.* | $output_objdir/${libname}${release}.*) if test "X$precious_files_regex" != "X"; then if $ECHO "$p" | $EGREP -e "$precious_files_regex" >/dev/null 2>&1 then continue fi fi func_append removelist " $p" ;; *) ;; esac done test -n "$removelist" && \ func_show_eval "${RM}r \$removelist" fi # Now set the variables for building old libraries. if test "$build_old_libs" = yes && test "$build_libtool_libs" != convenience ; then func_append oldlibs " $output_objdir/$libname.$libext" # Transform .lo files to .o files. oldobjs="$objs "`$ECHO "$libobjs" | $SP2NL | $SED "/\.${libext}$/d; $lo2o" | $NL2SP` fi # Eliminate all temporary directories. #for path in $notinst_path; do # lib_search_path=`$ECHO "$lib_search_path " | $SED "s% $path % %g"` # deplibs=`$ECHO "$deplibs " | $SED "s% -L$path % %g"` # dependency_libs=`$ECHO "$dependency_libs " | $SED "s% -L$path % %g"` #done if test -n "$xrpath"; then # If the user specified any rpath flags, then add them. temp_xrpath= for libdir in $xrpath; do func_replace_sysroot "$libdir" func_append temp_xrpath " -R$func_replace_sysroot_result" case "$finalize_rpath " in *" $libdir "*) ;; *) func_append finalize_rpath " $libdir" ;; esac done if test "$hardcode_into_libs" != yes || test "$build_old_libs" = yes; then dependency_libs="$temp_xrpath $dependency_libs" fi fi # Make sure dlfiles contains only unique files that won't be dlpreopened old_dlfiles="$dlfiles" dlfiles= for lib in $old_dlfiles; do case " $dlprefiles $dlfiles " in *" $lib "*) ;; *) func_append dlfiles " $lib" ;; esac done # Make sure dlprefiles contains only unique files old_dlprefiles="$dlprefiles" dlprefiles= for lib in $old_dlprefiles; do case "$dlprefiles " in *" $lib "*) ;; *) func_append dlprefiles " $lib" ;; esac done if test "$build_libtool_libs" = yes; then if test -n "$rpath"; then case $host in *-*-cygwin* | *-*-mingw* | *-*-pw32* | *-*-os2* | *-*-beos* | *-cegcc* | *-*-haiku*) # these systems don't actually have a c library (as such)! ;; *-*-rhapsody* | *-*-darwin1.[012]) # Rhapsody C library is in the System framework func_append deplibs " System.ltframework" ;; *-*-netbsd*) # Don't link with libc until the a.out ld.so is fixed. ;; *-*-openbsd* | *-*-freebsd* | *-*-dragonfly*) # Do not include libc due to us having libc/libc_r. ;; *-*-sco3.2v5* | *-*-sco5v6*) # Causes problems with __ctype ;; *-*-sysv4.2uw2* | *-*-sysv5* | *-*-unixware* | *-*-OpenUNIX*) # Compiler inserts libc in the correct place for threads to work ;; *) # Add libc to deplibs on all other systems if necessary. if test "$build_libtool_need_lc" = "yes"; then func_append deplibs " -lc" fi ;; esac fi # Transform deplibs into only deplibs that can be linked in shared. name_save=$name libname_save=$libname release_save=$release versuffix_save=$versuffix major_save=$major # I'm not sure if I'm treating the release correctly. I think # release should show up in the -l (ie -lgmp5) so we don't want to # add it in twice. Is that correct? release="" versuffix="" major="" newdeplibs= droppeddeps=no case $deplibs_check_method in pass_all) # Don't check for shared/static. Everything works. # This might be a little naive. We might want to check # whether the library exists or not. But this is on # osf3 & osf4 and I'm not really sure... Just # implementing what was already the behavior. newdeplibs=$deplibs ;; test_compile) # This code stresses the "libraries are programs" paradigm to its # limits. Maybe even breaks it. We compile a program, linking it # against the deplibs as a proxy for the library. Then we can check # whether they linked in statically or dynamically with ldd. $opt_dry_run || $RM conftest.c cat > conftest.c </dev/null` $nocaseglob else potential_libs=`ls $i/$libnameglob[.-]* 2>/dev/null` fi for potent_lib in $potential_libs; do # Follow soft links. if ls -lLd "$potent_lib" 2>/dev/null | $GREP " -> " >/dev/null; then continue fi # The statement above tries to avoid entering an # endless loop below, in case of cyclic links. # We might still enter an endless loop, since a link # loop can be closed while we follow links, # but so what? potlib="$potent_lib" while test -h "$potlib" 2>/dev/null; do potliblink=`ls -ld $potlib | ${SED} 's/.* -> //'` case $potliblink in [\\/]* | [A-Za-z]:[\\/]*) potlib="$potliblink";; *) potlib=`$ECHO "$potlib" | $SED 's,[^/]*$,,'`"$potliblink";; esac done if eval $file_magic_cmd \"\$potlib\" 2>/dev/null | $SED -e 10q | $EGREP "$file_magic_regex" > /dev/null; then func_append newdeplibs " $a_deplib" a_deplib="" break 2 fi done done fi if test -n "$a_deplib" ; then droppeddeps=yes echo $ECHO "*** Warning: linker path does not have real file for library $a_deplib." echo "*** I have the capability to make that library automatically link in when" echo "*** you link to this library. But I can only do this if you have a" echo "*** shared version of the library, which you do not appear to have" echo "*** because I did check the linker path looking for a file starting" if test -z "$potlib" ; then $ECHO "*** with $libname but no candidates were found. (...for file magic test)" else $ECHO "*** with $libname and none of the candidates passed a file format test" $ECHO "*** using a file magic. Last file checked: $potlib" fi fi ;; *) # Add a -L argument. func_append newdeplibs " $a_deplib" ;; esac done # Gone through all deplibs. ;; match_pattern*) set dummy $deplibs_check_method; shift match_pattern_regex=`expr "$deplibs_check_method" : "$1 \(.*\)"` for a_deplib in $deplibs; do case $a_deplib in -l*) func_stripname -l '' "$a_deplib" name=$func_stripname_result if test "X$allow_libtool_libs_with_static_runtimes" = "Xyes" ; then case " $predeps $postdeps " in *" $a_deplib "*) func_append newdeplibs " $a_deplib" a_deplib="" ;; esac fi if test -n "$a_deplib" ; then libname=`eval "\\$ECHO \"$libname_spec\""` for i in $lib_search_path $sys_lib_search_path $shlib_search_path; do potential_libs=`ls $i/$libname[.-]* 2>/dev/null` for potent_lib in $potential_libs; do potlib="$potent_lib" # see symlink-check above in file_magic test if eval "\$ECHO \"$potent_lib\"" 2>/dev/null | $SED 10q | \ $EGREP "$match_pattern_regex" > /dev/null; then func_append newdeplibs " $a_deplib" a_deplib="" break 2 fi done done fi if test -n "$a_deplib" ; then droppeddeps=yes echo $ECHO "*** Warning: linker path does not have real file for library $a_deplib." echo "*** I have the capability to make that library automatically link in when" echo "*** you link to this library. But I can only do this if you have a" echo "*** shared version of the library, which you do not appear to have" echo "*** because I did check the linker path looking for a file starting" if test -z "$potlib" ; then $ECHO "*** with $libname but no candidates were found. (...for regex pattern test)" else $ECHO "*** with $libname and none of the candidates passed a file format test" $ECHO "*** using a regex pattern. Last file checked: $potlib" fi fi ;; *) # Add a -L argument. func_append newdeplibs " $a_deplib" ;; esac done # Gone through all deplibs. ;; none | unknown | *) newdeplibs="" tmp_deplibs=`$ECHO " $deplibs" | $SED 's/ -lc$//; s/ -[LR][^ ]*//g'` if test "X$allow_libtool_libs_with_static_runtimes" = "Xyes" ; then for i in $predeps $postdeps ; do # can't use Xsed below, because $i might contain '/' tmp_deplibs=`$ECHO " $tmp_deplibs" | $SED "s,$i,,"` done fi case $tmp_deplibs in *[!\ \ ]*) echo if test "X$deplibs_check_method" = "Xnone"; then echo "*** Warning: inter-library dependencies are not supported in this platform." else echo "*** Warning: inter-library dependencies are not known to be supported." fi echo "*** All declared inter-library dependencies are being dropped." droppeddeps=yes ;; esac ;; esac versuffix=$versuffix_save major=$major_save release=$release_save libname=$libname_save name=$name_save case $host in *-*-rhapsody* | *-*-darwin1.[012]) # On Rhapsody replace the C library with the System framework newdeplibs=`$ECHO " $newdeplibs" | $SED 's/ -lc / System.ltframework /'` ;; esac if test "$droppeddeps" = yes; then if test "$module" = yes; then echo echo "*** Warning: libtool could not satisfy all declared inter-library" $ECHO "*** dependencies of module $libname. Therefore, libtool will create" echo "*** a static module, that should work as long as the dlopening" echo "*** application is linked with the -dlopen flag." if test -z "$global_symbol_pipe"; then echo echo "*** However, this would only work if libtool was able to extract symbol" echo "*** lists from a program, using \`nm' or equivalent, but libtool could" echo "*** not find such a program. So, this module is probably useless." echo "*** \`nm' from GNU binutils and a full rebuild may help." fi if test "$build_old_libs" = no; then oldlibs="$output_objdir/$libname.$libext" build_libtool_libs=module build_old_libs=yes else build_libtool_libs=no fi else echo "*** The inter-library dependencies that have been dropped here will be" echo "*** automatically added whenever a program is linked with this library" echo "*** or is declared to -dlopen it." if test "$allow_undefined" = no; then echo echo "*** Since this library must not contain undefined symbols," echo "*** because either the platform does not support them or" echo "*** it was explicitly requested with -no-undefined," echo "*** libtool will only create a static version of it." if test "$build_old_libs" = no; then oldlibs="$output_objdir/$libname.$libext" build_libtool_libs=module build_old_libs=yes else build_libtool_libs=no fi fi fi fi # Done checking deplibs! deplibs=$newdeplibs fi # Time to change all our "foo.ltframework" stuff back to "-framework foo" case $host in *-*-darwin*) newdeplibs=`$ECHO " $newdeplibs" | $SED 's% \([^ $]*\).ltframework% -framework \1%g'` new_inherited_linker_flags=`$ECHO " $new_inherited_linker_flags" | $SED 's% \([^ $]*\).ltframework% -framework \1%g'` deplibs=`$ECHO " $deplibs" | $SED 's% \([^ $]*\).ltframework% -framework \1%g'` ;; esac # move library search paths that coincide with paths to not yet # installed libraries to the beginning of the library search list new_libs= for path in $notinst_path; do case " $new_libs " in *" -L$path/$objdir "*) ;; *) case " $deplibs " in *" -L$path/$objdir "*) func_append new_libs " -L$path/$objdir" ;; esac ;; esac done for deplib in $deplibs; do case $deplib in -L*) case " $new_libs " in *" $deplib "*) ;; *) func_append new_libs " $deplib" ;; esac ;; *) func_append new_libs " $deplib" ;; esac done deplibs="$new_libs" # All the library-specific variables (install_libdir is set above). library_names= old_library= dlname= # Test again, we may have decided not to build it any more if test "$build_libtool_libs" = yes; then # Remove ${wl} instances when linking with ld. # FIXME: should test the right _cmds variable. case $archive_cmds in *\$LD\ *) wl= ;; esac if test "$hardcode_into_libs" = yes; then # Hardcode the library paths hardcode_libdirs= dep_rpath= rpath="$finalize_rpath" test "$opt_mode" != relink && rpath="$compile_rpath$rpath" for libdir in $rpath; do if test -n "$hardcode_libdir_flag_spec"; then if test -n "$hardcode_libdir_separator"; then func_replace_sysroot "$libdir" libdir=$func_replace_sysroot_result if test -z "$hardcode_libdirs"; then hardcode_libdirs="$libdir" else # Just accumulate the unique libdirs. case $hardcode_libdir_separator$hardcode_libdirs$hardcode_libdir_separator in *"$hardcode_libdir_separator$libdir$hardcode_libdir_separator"*) ;; *) func_append hardcode_libdirs "$hardcode_libdir_separator$libdir" ;; esac fi else eval flag=\"$hardcode_libdir_flag_spec\" func_append dep_rpath " $flag" fi elif test -n "$runpath_var"; then case "$perm_rpath " in *" $libdir "*) ;; *) func_append perm_rpath " $libdir" ;; esac fi done # Substitute the hardcoded libdirs into the rpath. if test -n "$hardcode_libdir_separator" && test -n "$hardcode_libdirs"; then libdir="$hardcode_libdirs" eval "dep_rpath=\"$hardcode_libdir_flag_spec\"" fi if test -n "$runpath_var" && test -n "$perm_rpath"; then # We should set the runpath_var. rpath= for dir in $perm_rpath; do func_append rpath "$dir:" done eval "$runpath_var='$rpath\$$runpath_var'; export $runpath_var" fi test -n "$dep_rpath" && deplibs="$dep_rpath $deplibs" fi shlibpath="$finalize_shlibpath" test "$opt_mode" != relink && shlibpath="$compile_shlibpath$shlibpath" if test -n "$shlibpath"; then eval "$shlibpath_var='$shlibpath\$$shlibpath_var'; export $shlibpath_var" fi # Get the real and link names of the library. eval shared_ext=\"$shrext_cmds\" eval library_names=\"$library_names_spec\" set dummy $library_names shift realname="$1" shift if test -n "$soname_spec"; then eval soname=\"$soname_spec\" else soname="$realname" fi if test -z "$dlname"; then dlname=$soname fi lib="$output_objdir/$realname" linknames= for link do func_append linknames " $link" done # Use standard objects if they are pic test -z "$pic_flag" && libobjs=`$ECHO "$libobjs" | $SP2NL | $SED "$lo2o" | $NL2SP` test "X$libobjs" = "X " && libobjs= delfiles= if test -n "$export_symbols" && test -n "$include_expsyms"; then $opt_dry_run || cp "$export_symbols" "$output_objdir/$libname.uexp" export_symbols="$output_objdir/$libname.uexp" func_append delfiles " $export_symbols" fi orig_export_symbols= case $host_os in cygwin* | mingw* | cegcc*) if test -n "$export_symbols" && test -z "$export_symbols_regex"; then # exporting using user supplied symfile if test "x`$SED 1q $export_symbols`" != xEXPORTS; then # and it's NOT already a .def file. Must figure out # which of the given symbols are data symbols and tag # them as such. So, trigger use of export_symbols_cmds. # export_symbols gets reassigned inside the "prepare # the list of exported symbols" if statement, so the # include_expsyms logic still works. orig_export_symbols="$export_symbols" export_symbols= always_export_symbols=yes fi fi ;; esac # Prepare the list of exported symbols if test -z "$export_symbols"; then if test "$always_export_symbols" = yes || test -n "$export_symbols_regex"; then func_verbose "generating symbol list for \`$libname.la'" export_symbols="$output_objdir/$libname.exp" $opt_dry_run || $RM $export_symbols cmds=$export_symbols_cmds save_ifs="$IFS"; IFS='~' for cmd1 in $cmds; do IFS="$save_ifs" # Take the normal branch if the nm_file_list_spec branch # doesn't work or if tool conversion is not needed. case $nm_file_list_spec~$to_tool_file_cmd in *~func_convert_file_noop | *~func_convert_file_msys_to_w32 | ~*) try_normal_branch=yes eval cmd=\"$cmd1\" func_len " $cmd" len=$func_len_result ;; *) try_normal_branch=no ;; esac if test "$try_normal_branch" = yes \ && { test "$len" -lt "$max_cmd_len" \ || test "$max_cmd_len" -le -1; } then func_show_eval "$cmd" 'exit $?' skipped_export=false elif test -n "$nm_file_list_spec"; then func_basename "$output" output_la=$func_basename_result save_libobjs=$libobjs save_output=$output output=${output_objdir}/${output_la}.nm func_to_tool_file "$output" libobjs=$nm_file_list_spec$func_to_tool_file_result func_append delfiles " $output" func_verbose "creating $NM input file list: $output" for obj in $save_libobjs; do func_to_tool_file "$obj" $ECHO "$func_to_tool_file_result" done > "$output" eval cmd=\"$cmd1\" func_show_eval "$cmd" 'exit $?' output=$save_output libobjs=$save_libobjs skipped_export=false else # The command line is too long to execute in one step. func_verbose "using reloadable object file for export list..." skipped_export=: # Break out early, otherwise skipped_export may be # set to false by a later but shorter cmd. break fi done IFS="$save_ifs" if test -n "$export_symbols_regex" && test "X$skipped_export" != "X:"; then func_show_eval '$EGREP -e "$export_symbols_regex" "$export_symbols" > "${export_symbols}T"' func_show_eval '$MV "${export_symbols}T" "$export_symbols"' fi fi fi if test -n "$export_symbols" && test -n "$include_expsyms"; then tmp_export_symbols="$export_symbols" test -n "$orig_export_symbols" && tmp_export_symbols="$orig_export_symbols" $opt_dry_run || eval '$ECHO "$include_expsyms" | $SP2NL >> "$tmp_export_symbols"' fi if test "X$skipped_export" != "X:" && test -n "$orig_export_symbols"; then # The given exports_symbols file has to be filtered, so filter it. func_verbose "filter symbol list for \`$libname.la' to tag DATA exports" # FIXME: $output_objdir/$libname.filter potentially contains lots of # 's' commands which not all seds can handle. GNU sed should be fine # though. Also, the filter scales superlinearly with the number of # global variables. join(1) would be nice here, but unfortunately # isn't a blessed tool. $opt_dry_run || $SED -e '/[ ,]DATA/!d;s,\(.*\)\([ \,].*\),s|^\1$|\1\2|,' < $export_symbols > $output_objdir/$libname.filter func_append delfiles " $export_symbols $output_objdir/$libname.filter" export_symbols=$output_objdir/$libname.def $opt_dry_run || $SED -f $output_objdir/$libname.filter < $orig_export_symbols > $export_symbols fi tmp_deplibs= for test_deplib in $deplibs; do case " $convenience " in *" $test_deplib "*) ;; *) func_append tmp_deplibs " $test_deplib" ;; esac done deplibs="$tmp_deplibs" if test -n "$convenience"; then if test -n "$whole_archive_flag_spec" && test "$compiler_needs_object" = yes && test -z "$libobjs"; then # extract the archives, so we have objects to list. # TODO: could optimize this to just extract one archive. whole_archive_flag_spec= fi if test -n "$whole_archive_flag_spec"; then save_libobjs=$libobjs eval libobjs=\"\$libobjs $whole_archive_flag_spec\" test "X$libobjs" = "X " && libobjs= else gentop="$output_objdir/${outputname}x" func_append generated " $gentop" func_extract_archives $gentop $convenience func_append libobjs " $func_extract_archives_result" test "X$libobjs" = "X " && libobjs= fi fi if test "$thread_safe" = yes && test -n "$thread_safe_flag_spec"; then eval flag=\"$thread_safe_flag_spec\" func_append linker_flags " $flag" fi # Make a backup of the uninstalled library when relinking if test "$opt_mode" = relink; then $opt_dry_run || eval '(cd $output_objdir && $RM ${realname}U && $MV $realname ${realname}U)' || exit $? fi # Do each of the archive commands. if test "$module" = yes && test -n "$module_cmds" ; then if test -n "$export_symbols" && test -n "$module_expsym_cmds"; then eval test_cmds=\"$module_expsym_cmds\" cmds=$module_expsym_cmds else eval test_cmds=\"$module_cmds\" cmds=$module_cmds fi else if test -n "$export_symbols" && test -n "$archive_expsym_cmds"; then eval test_cmds=\"$archive_expsym_cmds\" cmds=$archive_expsym_cmds else eval test_cmds=\"$archive_cmds\" cmds=$archive_cmds fi fi if test "X$skipped_export" != "X:" && func_len " $test_cmds" && len=$func_len_result && test "$len" -lt "$max_cmd_len" || test "$max_cmd_len" -le -1; then : else # The command line is too long to link in one step, link piecewise # or, if using GNU ld and skipped_export is not :, use a linker # script. # Save the value of $output and $libobjs because we want to # use them later. If we have whole_archive_flag_spec, we # want to use save_libobjs as it was before # whole_archive_flag_spec was expanded, because we can't # assume the linker understands whole_archive_flag_spec. # This may have to be revisited, in case too many # convenience libraries get linked in and end up exceeding # the spec. if test -z "$convenience" || test -z "$whole_archive_flag_spec"; then save_libobjs=$libobjs fi save_output=$output func_basename "$output" output_la=$func_basename_result # Clear the reloadable object creation command queue and # initialize k to one. test_cmds= concat_cmds= objlist= last_robj= k=1 if test -n "$save_libobjs" && test "X$skipped_export" != "X:" && test "$with_gnu_ld" = yes; then output=${output_objdir}/${output_la}.lnkscript func_verbose "creating GNU ld script: $output" echo 'INPUT (' > $output for obj in $save_libobjs do func_to_tool_file "$obj" $ECHO "$func_to_tool_file_result" >> $output done echo ')' >> $output func_append delfiles " $output" func_to_tool_file "$output" output=$func_to_tool_file_result elif test -n "$save_libobjs" && test "X$skipped_export" != "X:" && test "X$file_list_spec" != X; then output=${output_objdir}/${output_la}.lnk func_verbose "creating linker input file list: $output" : > $output set x $save_libobjs shift firstobj= if test "$compiler_needs_object" = yes; then firstobj="$1 " shift fi for obj do func_to_tool_file "$obj" $ECHO "$func_to_tool_file_result" >> $output done func_append delfiles " $output" func_to_tool_file "$output" output=$firstobj\"$file_list_spec$func_to_tool_file_result\" else if test -n "$save_libobjs"; then func_verbose "creating reloadable object files..." output=$output_objdir/$output_la-${k}.$objext eval test_cmds=\"$reload_cmds\" func_len " $test_cmds" len0=$func_len_result len=$len0 # Loop over the list of objects to be linked. for obj in $save_libobjs do func_len " $obj" func_arith $len + $func_len_result len=$func_arith_result if test "X$objlist" = X || test "$len" -lt "$max_cmd_len"; then func_append objlist " $obj" else # The command $test_cmds is almost too long, add a # command to the queue. if test "$k" -eq 1 ; then # The first file doesn't have a previous command to add. reload_objs=$objlist eval concat_cmds=\"$reload_cmds\" else # All subsequent reloadable object files will link in # the last one created. reload_objs="$objlist $last_robj" eval concat_cmds=\"\$concat_cmds~$reload_cmds~\$RM $last_robj\" fi last_robj=$output_objdir/$output_la-${k}.$objext func_arith $k + 1 k=$func_arith_result output=$output_objdir/$output_la-${k}.$objext objlist=" $obj" func_len " $last_robj" func_arith $len0 + $func_len_result len=$func_arith_result fi done # Handle the remaining objects by creating one last # reloadable object file. All subsequent reloadable object # files will link in the last one created. test -z "$concat_cmds" || concat_cmds=$concat_cmds~ reload_objs="$objlist $last_robj" eval concat_cmds=\"\${concat_cmds}$reload_cmds\" if test -n "$last_robj"; then eval concat_cmds=\"\${concat_cmds}~\$RM $last_robj\" fi func_append delfiles " $output" else output= fi if ${skipped_export-false}; then func_verbose "generating symbol list for \`$libname.la'" export_symbols="$output_objdir/$libname.exp" $opt_dry_run || $RM $export_symbols libobjs=$output # Append the command to create the export file. test -z "$concat_cmds" || concat_cmds=$concat_cmds~ eval concat_cmds=\"\$concat_cmds$export_symbols_cmds\" if test -n "$last_robj"; then eval concat_cmds=\"\$concat_cmds~\$RM $last_robj\" fi fi test -n "$save_libobjs" && func_verbose "creating a temporary reloadable object file: $output" # Loop through the commands generated above and execute them. save_ifs="$IFS"; IFS='~' for cmd in $concat_cmds; do IFS="$save_ifs" $opt_silent || { func_quote_for_expand "$cmd" eval "func_echo $func_quote_for_expand_result" } $opt_dry_run || eval "$cmd" || { lt_exit=$? # Restore the uninstalled library and exit if test "$opt_mode" = relink; then ( cd "$output_objdir" && \ $RM "${realname}T" && \ $MV "${realname}U" "$realname" ) fi exit $lt_exit } done IFS="$save_ifs" if test -n "$export_symbols_regex" && ${skipped_export-false}; then func_show_eval '$EGREP -e "$export_symbols_regex" "$export_symbols" > "${export_symbols}T"' func_show_eval '$MV "${export_symbols}T" "$export_symbols"' fi fi if ${skipped_export-false}; then if test -n "$export_symbols" && test -n "$include_expsyms"; then tmp_export_symbols="$export_symbols" test -n "$orig_export_symbols" && tmp_export_symbols="$orig_export_symbols" $opt_dry_run || eval '$ECHO "$include_expsyms" | $SP2NL >> "$tmp_export_symbols"' fi if test -n "$orig_export_symbols"; then # The given exports_symbols file has to be filtered, so filter it. func_verbose "filter symbol list for \`$libname.la' to tag DATA exports" # FIXME: $output_objdir/$libname.filter potentially contains lots of # 's' commands which not all seds can handle. GNU sed should be fine # though. Also, the filter scales superlinearly with the number of # global variables. join(1) would be nice here, but unfortunately # isn't a blessed tool. $opt_dry_run || $SED -e '/[ ,]DATA/!d;s,\(.*\)\([ \,].*\),s|^\1$|\1\2|,' < $export_symbols > $output_objdir/$libname.filter func_append delfiles " $export_symbols $output_objdir/$libname.filter" export_symbols=$output_objdir/$libname.def $opt_dry_run || $SED -f $output_objdir/$libname.filter < $orig_export_symbols > $export_symbols fi fi libobjs=$output # Restore the value of output. output=$save_output if test -n "$convenience" && test -n "$whole_archive_flag_spec"; then eval libobjs=\"\$libobjs $whole_archive_flag_spec\" test "X$libobjs" = "X " && libobjs= fi # Expand the library linking commands again to reset the # value of $libobjs for piecewise linking. # Do each of the archive commands. if test "$module" = yes && test -n "$module_cmds" ; then if test -n "$export_symbols" && test -n "$module_expsym_cmds"; then cmds=$module_expsym_cmds else cmds=$module_cmds fi else if test -n "$export_symbols" && test -n "$archive_expsym_cmds"; then cmds=$archive_expsym_cmds else cmds=$archive_cmds fi fi fi if test -n "$delfiles"; then # Append the command to remove temporary files to $cmds. eval cmds=\"\$cmds~\$RM $delfiles\" fi # Add any objects from preloaded convenience libraries if test -n "$dlprefiles"; then gentop="$output_objdir/${outputname}x" func_append generated " $gentop" func_extract_archives $gentop $dlprefiles func_append libobjs " $func_extract_archives_result" test "X$libobjs" = "X " && libobjs= fi save_ifs="$IFS"; IFS='~' for cmd in $cmds; do IFS="$save_ifs" eval cmd=\"$cmd\" $opt_silent || { func_quote_for_expand "$cmd" eval "func_echo $func_quote_for_expand_result" } $opt_dry_run || eval "$cmd" || { lt_exit=$? # Restore the uninstalled library and exit if test "$opt_mode" = relink; then ( cd "$output_objdir" && \ $RM "${realname}T" && \ $MV "${realname}U" "$realname" ) fi exit $lt_exit } done IFS="$save_ifs" # Restore the uninstalled library and exit if test "$opt_mode" = relink; then $opt_dry_run || eval '(cd $output_objdir && $RM ${realname}T && $MV $realname ${realname}T && $MV ${realname}U $realname)' || exit $? if test -n "$convenience"; then if test -z "$whole_archive_flag_spec"; then func_show_eval '${RM}r "$gentop"' fi fi exit $EXIT_SUCCESS fi # Create links to the real library. for linkname in $linknames; do if test "$realname" != "$linkname"; then func_show_eval '(cd "$output_objdir" && $RM "$linkname" && $LN_S "$realname" "$linkname")' 'exit $?' fi done # If -module or -export-dynamic was specified, set the dlname. if test "$module" = yes || test "$export_dynamic" = yes; then # On all known operating systems, these are identical. dlname="$soname" fi fi ;; obj) if test -n "$dlfiles$dlprefiles" || test "$dlself" != no; then func_warning "\`-dlopen' is ignored for objects" fi case " $deplibs" in *\ -l* | *\ -L*) func_warning "\`-l' and \`-L' are ignored for objects" ;; esac test -n "$rpath" && \ func_warning "\`-rpath' is ignored for objects" test -n "$xrpath" && \ func_warning "\`-R' is ignored for objects" test -n "$vinfo" && \ func_warning "\`-version-info' is ignored for objects" test -n "$release" && \ func_warning "\`-release' is ignored for objects" case $output in *.lo) test -n "$objs$old_deplibs" && \ func_fatal_error "cannot build library object \`$output' from non-libtool objects" libobj=$output func_lo2o "$libobj" obj=$func_lo2o_result ;; *) libobj= obj="$output" ;; esac # Delete the old objects. $opt_dry_run || $RM $obj $libobj # Objects from convenience libraries. This assumes # single-version convenience libraries. Whenever we create # different ones for PIC/non-PIC, this we'll have to duplicate # the extraction. reload_conv_objs= gentop= # reload_cmds runs $LD directly, so let us get rid of # -Wl from whole_archive_flag_spec and hope we can get by with # turning comma into space.. wl= if test -n "$convenience"; then if test -n "$whole_archive_flag_spec"; then eval tmp_whole_archive_flags=\"$whole_archive_flag_spec\" reload_conv_objs=$reload_objs\ `$ECHO "$tmp_whole_archive_flags" | $SED 's|,| |g'` else gentop="$output_objdir/${obj}x" func_append generated " $gentop" func_extract_archives $gentop $convenience reload_conv_objs="$reload_objs $func_extract_archives_result" fi fi # If we're not building shared, we need to use non_pic_objs test "$build_libtool_libs" != yes && libobjs="$non_pic_objects" # Create the old-style object. reload_objs="$objs$old_deplibs "`$ECHO "$libobjs" | $SP2NL | $SED "/\.${libext}$/d; /\.lib$/d; $lo2o" | $NL2SP`" $reload_conv_objs" ### testsuite: skip nested quoting test output="$obj" func_execute_cmds "$reload_cmds" 'exit $?' # Exit if we aren't doing a library object file. if test -z "$libobj"; then if test -n "$gentop"; then func_show_eval '${RM}r "$gentop"' fi exit $EXIT_SUCCESS fi if test "$build_libtool_libs" != yes; then if test -n "$gentop"; then func_show_eval '${RM}r "$gentop"' fi # Create an invalid libtool object if no PIC, so that we don't # accidentally link it into a program. # $show "echo timestamp > $libobj" # $opt_dry_run || eval "echo timestamp > $libobj" || exit $? exit $EXIT_SUCCESS fi if test -n "$pic_flag" || test "$pic_mode" != default; then # Only do commands if we really have different PIC objects. reload_objs="$libobjs $reload_conv_objs" output="$libobj" func_execute_cmds "$reload_cmds" 'exit $?' fi if test -n "$gentop"; then func_show_eval '${RM}r "$gentop"' fi exit $EXIT_SUCCESS ;; prog) case $host in *cygwin*) func_stripname '' '.exe' "$output" output=$func_stripname_result.exe;; esac test -n "$vinfo" && \ func_warning "\`-version-info' is ignored for programs" test -n "$release" && \ func_warning "\`-release' is ignored for programs" test "$preload" = yes \ && test "$dlopen_support" = unknown \ && test "$dlopen_self" = unknown \ && test "$dlopen_self_static" = unknown && \ func_warning "\`LT_INIT([dlopen])' not used. Assuming no dlopen support." case $host in *-*-rhapsody* | *-*-darwin1.[012]) # On Rhapsody replace the C library is the System framework compile_deplibs=`$ECHO " $compile_deplibs" | $SED 's/ -lc / System.ltframework /'` finalize_deplibs=`$ECHO " $finalize_deplibs" | $SED 's/ -lc / System.ltframework /'` ;; esac case $host in *-*-darwin*) # Don't allow lazy linking, it breaks C++ global constructors # But is supposedly fixed on 10.4 or later (yay!). if test "$tagname" = CXX ; then case ${MACOSX_DEPLOYMENT_TARGET-10.0} in 10.[0123]) func_append compile_command " ${wl}-bind_at_load" func_append finalize_command " ${wl}-bind_at_load" ;; esac fi # Time to change all our "foo.ltframework" stuff back to "-framework foo" compile_deplibs=`$ECHO " $compile_deplibs" | $SED 's% \([^ $]*\).ltframework% -framework \1%g'` finalize_deplibs=`$ECHO " $finalize_deplibs" | $SED 's% \([^ $]*\).ltframework% -framework \1%g'` ;; esac # move library search paths that coincide with paths to not yet # installed libraries to the beginning of the library search list new_libs= for path in $notinst_path; do case " $new_libs " in *" -L$path/$objdir "*) ;; *) case " $compile_deplibs " in *" -L$path/$objdir "*) func_append new_libs " -L$path/$objdir" ;; esac ;; esac done for deplib in $compile_deplibs; do case $deplib in -L*) case " $new_libs " in *" $deplib "*) ;; *) func_append new_libs " $deplib" ;; esac ;; *) func_append new_libs " $deplib" ;; esac done compile_deplibs="$new_libs" func_append compile_command " $compile_deplibs" func_append finalize_command " $finalize_deplibs" if test -n "$rpath$xrpath"; then # If the user specified any rpath flags, then add them. for libdir in $rpath $xrpath; do # This is the magic to use -rpath. case "$finalize_rpath " in *" $libdir "*) ;; *) func_append finalize_rpath " $libdir" ;; esac done fi # Now hardcode the library paths rpath= hardcode_libdirs= for libdir in $compile_rpath $finalize_rpath; do if test -n "$hardcode_libdir_flag_spec"; then if test -n "$hardcode_libdir_separator"; then if test -z "$hardcode_libdirs"; then hardcode_libdirs="$libdir" else # Just accumulate the unique libdirs. case $hardcode_libdir_separator$hardcode_libdirs$hardcode_libdir_separator in *"$hardcode_libdir_separator$libdir$hardcode_libdir_separator"*) ;; *) func_append hardcode_libdirs "$hardcode_libdir_separator$libdir" ;; esac fi else eval flag=\"$hardcode_libdir_flag_spec\" func_append rpath " $flag" fi elif test -n "$runpath_var"; then case "$perm_rpath " in *" $libdir "*) ;; *) func_append perm_rpath " $libdir" ;; esac fi case $host in *-*-cygwin* | *-*-mingw* | *-*-pw32* | *-*-os2* | *-cegcc*) testbindir=`${ECHO} "$libdir" | ${SED} -e 's*/lib$*/bin*'` case :$dllsearchpath: in *":$libdir:"*) ;; ::) dllsearchpath=$libdir;; *) func_append dllsearchpath ":$libdir";; esac case :$dllsearchpath: in *":$testbindir:"*) ;; ::) dllsearchpath=$testbindir;; *) func_append dllsearchpath ":$testbindir";; esac ;; esac done # Substitute the hardcoded libdirs into the rpath. if test -n "$hardcode_libdir_separator" && test -n "$hardcode_libdirs"; then libdir="$hardcode_libdirs" eval rpath=\" $hardcode_libdir_flag_spec\" fi compile_rpath="$rpath" rpath= hardcode_libdirs= for libdir in $finalize_rpath; do if test -n "$hardcode_libdir_flag_spec"; then if test -n "$hardcode_libdir_separator"; then if test -z "$hardcode_libdirs"; then hardcode_libdirs="$libdir" else # Just accumulate the unique libdirs. case $hardcode_libdir_separator$hardcode_libdirs$hardcode_libdir_separator in *"$hardcode_libdir_separator$libdir$hardcode_libdir_separator"*) ;; *) func_append hardcode_libdirs "$hardcode_libdir_separator$libdir" ;; esac fi else eval flag=\"$hardcode_libdir_flag_spec\" func_append rpath " $flag" fi elif test -n "$runpath_var"; then case "$finalize_perm_rpath " in *" $libdir "*) ;; *) func_append finalize_perm_rpath " $libdir" ;; esac fi done # Substitute the hardcoded libdirs into the rpath. if test -n "$hardcode_libdir_separator" && test -n "$hardcode_libdirs"; then libdir="$hardcode_libdirs" eval rpath=\" $hardcode_libdir_flag_spec\" fi finalize_rpath="$rpath" if test -n "$libobjs" && test "$build_old_libs" = yes; then # Transform all the library objects into standard objects. compile_command=`$ECHO "$compile_command" | $SP2NL | $SED "$lo2o" | $NL2SP` finalize_command=`$ECHO "$finalize_command" | $SP2NL | $SED "$lo2o" | $NL2SP` fi func_generate_dlsyms "$outputname" "@PROGRAM@" "no" # template prelinking step if test -n "$prelink_cmds"; then func_execute_cmds "$prelink_cmds" 'exit $?' fi wrappers_required=yes case $host in *cegcc* | *mingw32ce*) # Disable wrappers for cegcc and mingw32ce hosts, we are cross compiling anyway. wrappers_required=no ;; *cygwin* | *mingw* ) if test "$build_libtool_libs" != yes; then wrappers_required=no fi ;; *) if test "$need_relink" = no || test "$build_libtool_libs" != yes; then wrappers_required=no fi ;; esac if test "$wrappers_required" = no; then # Replace the output file specification. compile_command=`$ECHO "$compile_command" | $SED 's%@OUTPUT@%'"$output"'%g'` link_command="$compile_command$compile_rpath" # We have no uninstalled library dependencies, so finalize right now. exit_status=0 func_show_eval "$link_command" 'exit_status=$?' if test -n "$postlink_cmds"; then func_to_tool_file "$output" postlink_cmds=`func_echo_all "$postlink_cmds" | $SED -e 's%@OUTPUT@%'"$output"'%g' -e 's%@TOOL_OUTPUT@%'"$func_to_tool_file_result"'%g'` func_execute_cmds "$postlink_cmds" 'exit $?' fi # Delete the generated files. if test -f "$output_objdir/${outputname}S.${objext}"; then func_show_eval '$RM "$output_objdir/${outputname}S.${objext}"' fi exit $exit_status fi if test -n "$compile_shlibpath$finalize_shlibpath"; then compile_command="$shlibpath_var=\"$compile_shlibpath$finalize_shlibpath\$$shlibpath_var\" $compile_command" fi if test -n "$finalize_shlibpath"; then finalize_command="$shlibpath_var=\"$finalize_shlibpath\$$shlibpath_var\" $finalize_command" fi compile_var= finalize_var= if test -n "$runpath_var"; then if test -n "$perm_rpath"; then # We should set the runpath_var. rpath= for dir in $perm_rpath; do func_append rpath "$dir:" done compile_var="$runpath_var=\"$rpath\$$runpath_var\" " fi if test -n "$finalize_perm_rpath"; then # We should set the runpath_var. rpath= for dir in $finalize_perm_rpath; do func_append rpath "$dir:" done finalize_var="$runpath_var=\"$rpath\$$runpath_var\" " fi fi if test "$no_install" = yes; then # We don't need to create a wrapper script. link_command="$compile_var$compile_command$compile_rpath" # Replace the output file specification. link_command=`$ECHO "$link_command" | $SED 's%@OUTPUT@%'"$output"'%g'` # Delete the old output file. $opt_dry_run || $RM $output # Link the executable and exit func_show_eval "$link_command" 'exit $?' if test -n "$postlink_cmds"; then func_to_tool_file "$output" postlink_cmds=`func_echo_all "$postlink_cmds" | $SED -e 's%@OUTPUT@%'"$output"'%g' -e 's%@TOOL_OUTPUT@%'"$func_to_tool_file_result"'%g'` func_execute_cmds "$postlink_cmds" 'exit $?' fi exit $EXIT_SUCCESS fi if test "$hardcode_action" = relink; then # Fast installation is not supported link_command="$compile_var$compile_command$compile_rpath" relink_command="$finalize_var$finalize_command$finalize_rpath" func_warning "this platform does not like uninstalled shared libraries" func_warning "\`$output' will be relinked during installation" else if test "$fast_install" != no; then link_command="$finalize_var$compile_command$finalize_rpath" if test "$fast_install" = yes; then relink_command=`$ECHO "$compile_var$compile_command$compile_rpath" | $SED 's%@OUTPUT@%\$progdir/\$file%g'` else # fast_install is set to needless relink_command= fi else link_command="$compile_var$compile_command$compile_rpath" relink_command="$finalize_var$finalize_command$finalize_rpath" fi fi # Replace the output file specification. link_command=`$ECHO "$link_command" | $SED 's%@OUTPUT@%'"$output_objdir/$outputname"'%g'` # Delete the old output files. $opt_dry_run || $RM $output $output_objdir/$outputname $output_objdir/lt-$outputname func_show_eval "$link_command" 'exit $?' if test -n "$postlink_cmds"; then func_to_tool_file "$output_objdir/$outputname" postlink_cmds=`func_echo_all "$postlink_cmds" | $SED -e 's%@OUTPUT@%'"$output_objdir/$outputname"'%g' -e 's%@TOOL_OUTPUT@%'"$func_to_tool_file_result"'%g'` func_execute_cmds "$postlink_cmds" 'exit $?' fi # Now create the wrapper script. func_verbose "creating $output" # Quote the relink command for shipping. if test -n "$relink_command"; then # Preserve any variables that may affect compiler behavior for var in $variables_saved_for_relink; do if eval test -z \"\${$var+set}\"; then relink_command="{ test -z \"\${$var+set}\" || $lt_unset $var || { $var=; export $var; }; }; $relink_command" elif eval var_value=\$$var; test -z "$var_value"; then relink_command="$var=; export $var; $relink_command" else func_quote_for_eval "$var_value" relink_command="$var=$func_quote_for_eval_result; export $var; $relink_command" fi done relink_command="(cd `pwd`; $relink_command)" relink_command=`$ECHO "$relink_command" | $SED "$sed_quote_subst"` fi # Only actually do things if not in dry run mode. $opt_dry_run || { # win32 will think the script is a binary if it has # a .exe suffix, so we strip it off here. case $output in *.exe) func_stripname '' '.exe' "$output" output=$func_stripname_result ;; esac # test for cygwin because mv fails w/o .exe extensions case $host in *cygwin*) exeext=.exe func_stripname '' '.exe' "$outputname" outputname=$func_stripname_result ;; *) exeext= ;; esac case $host in *cygwin* | *mingw* ) func_dirname_and_basename "$output" "" "." output_name=$func_basename_result output_path=$func_dirname_result cwrappersource="$output_path/$objdir/lt-$output_name.c" cwrapper="$output_path/$output_name.exe" $RM $cwrappersource $cwrapper trap "$RM $cwrappersource $cwrapper; exit $EXIT_FAILURE" 1 2 15 func_emit_cwrapperexe_src > $cwrappersource # The wrapper executable is built using the $host compiler, # because it contains $host paths and files. If cross- # compiling, it, like the target executable, must be # executed on the $host or under an emulation environment. $opt_dry_run || { $LTCC $LTCFLAGS -o $cwrapper $cwrappersource $STRIP $cwrapper } # Now, create the wrapper script for func_source use: func_ltwrapper_scriptname $cwrapper $RM $func_ltwrapper_scriptname_result trap "$RM $func_ltwrapper_scriptname_result; exit $EXIT_FAILURE" 1 2 15 $opt_dry_run || { # note: this script will not be executed, so do not chmod. if test "x$build" = "x$host" ; then $cwrapper --lt-dump-script > $func_ltwrapper_scriptname_result else func_emit_wrapper no > $func_ltwrapper_scriptname_result fi } ;; * ) $RM $output trap "$RM $output; exit $EXIT_FAILURE" 1 2 15 func_emit_wrapper no > $output chmod +x $output ;; esac } exit $EXIT_SUCCESS ;; esac # See if we need to build an old-fashioned archive. for oldlib in $oldlibs; do if test "$build_libtool_libs" = convenience; then oldobjs="$libobjs_save $symfileobj" addlibs="$convenience" build_libtool_libs=no else if test "$build_libtool_libs" = module; then oldobjs="$libobjs_save" build_libtool_libs=no else oldobjs="$old_deplibs $non_pic_objects" if test "$preload" = yes && test -f "$symfileobj"; then func_append oldobjs " $symfileobj" fi fi addlibs="$old_convenience" fi if test -n "$addlibs"; then gentop="$output_objdir/${outputname}x" func_append generated " $gentop" func_extract_archives $gentop $addlibs func_append oldobjs " $func_extract_archives_result" fi # Do each command in the archive commands. if test -n "$old_archive_from_new_cmds" && test "$build_libtool_libs" = yes; then cmds=$old_archive_from_new_cmds else # Add any objects from preloaded convenience libraries if test -n "$dlprefiles"; then gentop="$output_objdir/${outputname}x" func_append generated " $gentop" func_extract_archives $gentop $dlprefiles func_append oldobjs " $func_extract_archives_result" fi # POSIX demands no paths to be encoded in archives. We have # to avoid creating archives with duplicate basenames if we # might have to extract them afterwards, e.g., when creating a # static archive out of a convenience library, or when linking # the entirety of a libtool archive into another (currently # not supported by libtool). if (for obj in $oldobjs do func_basename "$obj" $ECHO "$func_basename_result" done | sort | sort -uc >/dev/null 2>&1); then : else echo "copying selected object files to avoid basename conflicts..." gentop="$output_objdir/${outputname}x" func_append generated " $gentop" func_mkdir_p "$gentop" save_oldobjs=$oldobjs oldobjs= counter=1 for obj in $save_oldobjs do func_basename "$obj" objbase="$func_basename_result" case " $oldobjs " in " ") oldobjs=$obj ;; *[\ /]"$objbase "*) while :; do # Make sure we don't pick an alternate name that also # overlaps. newobj=lt$counter-$objbase func_arith $counter + 1 counter=$func_arith_result case " $oldobjs " in *[\ /]"$newobj "*) ;; *) if test ! -f "$gentop/$newobj"; then break; fi ;; esac done func_show_eval "ln $obj $gentop/$newobj || cp $obj $gentop/$newobj" func_append oldobjs " $gentop/$newobj" ;; *) func_append oldobjs " $obj" ;; esac done fi func_to_tool_file "$oldlib" func_convert_file_msys_to_w32 tool_oldlib=$func_to_tool_file_result eval cmds=\"$old_archive_cmds\" func_len " $cmds" len=$func_len_result if test "$len" -lt "$max_cmd_len" || test "$max_cmd_len" -le -1; then cmds=$old_archive_cmds elif test -n "$archiver_list_spec"; then func_verbose "using command file archive linking..." for obj in $oldobjs do func_to_tool_file "$obj" $ECHO "$func_to_tool_file_result" done > $output_objdir/$libname.libcmd func_to_tool_file "$output_objdir/$libname.libcmd" oldobjs=" $archiver_list_spec$func_to_tool_file_result" cmds=$old_archive_cmds else # the command line is too long to link in one step, link in parts func_verbose "using piecewise archive linking..." save_RANLIB=$RANLIB RANLIB=: objlist= concat_cmds= save_oldobjs=$oldobjs oldobjs= # Is there a better way of finding the last object in the list? for obj in $save_oldobjs do last_oldobj=$obj done eval test_cmds=\"$old_archive_cmds\" func_len " $test_cmds" len0=$func_len_result len=$len0 for obj in $save_oldobjs do func_len " $obj" func_arith $len + $func_len_result len=$func_arith_result func_append objlist " $obj" if test "$len" -lt "$max_cmd_len"; then : else # the above command should be used before it gets too long oldobjs=$objlist if test "$obj" = "$last_oldobj" ; then RANLIB=$save_RANLIB fi test -z "$concat_cmds" || concat_cmds=$concat_cmds~ eval concat_cmds=\"\${concat_cmds}$old_archive_cmds\" objlist= len=$len0 fi done RANLIB=$save_RANLIB oldobjs=$objlist if test "X$oldobjs" = "X" ; then eval cmds=\"\$concat_cmds\" else eval cmds=\"\$concat_cmds~\$old_archive_cmds\" fi fi fi func_execute_cmds "$cmds" 'exit $?' done test -n "$generated" && \ func_show_eval "${RM}r$generated" # Now create the libtool archive. case $output in *.la) old_library= test "$build_old_libs" = yes && old_library="$libname.$libext" func_verbose "creating $output" # Preserve any variables that may affect compiler behavior for var in $variables_saved_for_relink; do if eval test -z \"\${$var+set}\"; then relink_command="{ test -z \"\${$var+set}\" || $lt_unset $var || { $var=; export $var; }; }; $relink_command" elif eval var_value=\$$var; test -z "$var_value"; then relink_command="$var=; export $var; $relink_command" else func_quote_for_eval "$var_value" relink_command="$var=$func_quote_for_eval_result; export $var; $relink_command" fi done # Quote the link command for shipping. relink_command="(cd `pwd`; $SHELL $progpath $preserve_args --mode=relink $libtool_args @inst_prefix_dir@)" relink_command=`$ECHO "$relink_command" | $SED "$sed_quote_subst"` if test "$hardcode_automatic" = yes ; then relink_command= fi # Only create the output if not a dry run. $opt_dry_run || { for installed in no yes; do if test "$installed" = yes; then if test -z "$install_libdir"; then break fi output="$output_objdir/$outputname"i # Replace all uninstalled libtool libraries with the installed ones newdependency_libs= for deplib in $dependency_libs; do case $deplib in *.la) func_basename "$deplib" name="$func_basename_result" func_resolve_sysroot "$deplib" eval libdir=`${SED} -n -e 's/^libdir=\(.*\)$/\1/p' $func_resolve_sysroot_result` test -z "$libdir" && \ func_fatal_error "\`$deplib' is not a valid libtool archive" func_append newdependency_libs " ${lt_sysroot:+=}$libdir/$name" ;; -L*) func_stripname -L '' "$deplib" func_replace_sysroot "$func_stripname_result" func_append newdependency_libs " -L$func_replace_sysroot_result" ;; -R*) func_stripname -R '' "$deplib" func_replace_sysroot "$func_stripname_result" func_append newdependency_libs " -R$func_replace_sysroot_result" ;; *) func_append newdependency_libs " $deplib" ;; esac done dependency_libs="$newdependency_libs" newdlfiles= for lib in $dlfiles; do case $lib in *.la) func_basename "$lib" name="$func_basename_result" eval libdir=`${SED} -n -e 's/^libdir=\(.*\)$/\1/p' $lib` test -z "$libdir" && \ func_fatal_error "\`$lib' is not a valid libtool archive" func_append newdlfiles " ${lt_sysroot:+=}$libdir/$name" ;; *) func_append newdlfiles " $lib" ;; esac done dlfiles="$newdlfiles" newdlprefiles= for lib in $dlprefiles; do case $lib in *.la) # Only pass preopened files to the pseudo-archive (for # eventual linking with the app. that links it) if we # didn't already link the preopened objects directly into # the library: func_basename "$lib" name="$func_basename_result" eval libdir=`${SED} -n -e 's/^libdir=\(.*\)$/\1/p' $lib` test -z "$libdir" && \ func_fatal_error "\`$lib' is not a valid libtool archive" func_append newdlprefiles " ${lt_sysroot:+=}$libdir/$name" ;; esac done dlprefiles="$newdlprefiles" else newdlfiles= for lib in $dlfiles; do case $lib in [\\/]* | [A-Za-z]:[\\/]*) abs="$lib" ;; *) abs=`pwd`"/$lib" ;; esac func_append newdlfiles " $abs" done dlfiles="$newdlfiles" newdlprefiles= for lib in $dlprefiles; do case $lib in [\\/]* | [A-Za-z]:[\\/]*) abs="$lib" ;; *) abs=`pwd`"/$lib" ;; esac func_append newdlprefiles " $abs" done dlprefiles="$newdlprefiles" fi $RM $output # place dlname in correct position for cygwin # In fact, it would be nice if we could use this code for all target # systems that can't hard-code library paths into their executables # and that have no shared library path variable independent of PATH, # but it turns out we can't easily determine that from inspecting # libtool variables, so we have to hard-code the OSs to which it # applies here; at the moment, that means platforms that use the PE # object format with DLL files. 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" >&6; } if ${lt_cv_path_NM+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$NM"; then # Let the user override the test. lt_cv_path_NM="$NM" else lt_nm_to_check="${ac_tool_prefix}nm" if test -n "$ac_tool_prefix" && test "$build" = "$host"; then lt_nm_to_check="$lt_nm_to_check nm" fi for lt_tmp_nm in $lt_nm_to_check; do lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR for ac_dir in $PATH /usr/ccs/bin/elf /usr/ccs/bin /usr/ucb /bin; do IFS="$lt_save_ifs" test -z "$ac_dir" && ac_dir=. tmp_nm="$ac_dir/$lt_tmp_nm" if test -f "$tmp_nm" || test -f "$tmp_nm$ac_exeext" ; then # Check to see if the nm accepts a BSD-compat flag. # Adding the `sed 1q' prevents false positives on HP-UX, which says: # nm: unknown option "B" ignored # Tru64's nm complains that /dev/null is an invalid object file case `"$tmp_nm" -B /dev/null 2>&1 | sed '1q'` in */dev/null* | *'Invalid file or object type'*) lt_cv_path_NM="$tmp_nm -B" break ;; *) case `"$tmp_nm" -p /dev/null 2>&1 | sed '1q'` in */dev/null*) lt_cv_path_NM="$tmp_nm -p" break ;; *) lt_cv_path_NM=${lt_cv_path_NM="$tmp_nm"} # keep the first match, but continue # so that we can try to find one that supports BSD flags ;; esac ;; esac fi done IFS="$lt_save_ifs" done : ${lt_cv_path_NM=no} fi fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_path_NM" >&5 $as_echo "$lt_cv_path_NM" >&6; } if test "$lt_cv_path_NM" != "no"; then NM="$lt_cv_path_NM" else # Didn't find any BSD compatible name lister, look for dumpbin. if test -n "$DUMPBIN"; then : # Let the user override the test. else if test -n "$ac_tool_prefix"; then for ac_prog in dumpbin "link -dump" do # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. set dummy $ac_tool_prefix$ac_prog; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_DUMPBIN+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$DUMPBIN"; then ac_cv_prog_DUMPBIN="$DUMPBIN" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_DUMPBIN="$ac_tool_prefix$ac_prog" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi DUMPBIN=$ac_cv_prog_DUMPBIN if test -n "$DUMPBIN"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $DUMPBIN" >&5 $as_echo "$DUMPBIN" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi test -n "$DUMPBIN" && break done fi if test -z "$DUMPBIN"; then ac_ct_DUMPBIN=$DUMPBIN for ac_prog in dumpbin "link -dump" do # Extract the first word of "$ac_prog", so it can be a program name with args. set dummy $ac_prog; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_DUMPBIN+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_DUMPBIN"; then ac_cv_prog_ac_ct_DUMPBIN="$ac_ct_DUMPBIN" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_DUMPBIN="$ac_prog" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_DUMPBIN=$ac_cv_prog_ac_ct_DUMPBIN if test -n "$ac_ct_DUMPBIN"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_DUMPBIN" >&5 $as_echo "$ac_ct_DUMPBIN" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi test -n "$ac_ct_DUMPBIN" && break done if test "x$ac_ct_DUMPBIN" = x; then DUMPBIN=":" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac DUMPBIN=$ac_ct_DUMPBIN fi fi case `$DUMPBIN -symbols /dev/null 2>&1 | sed '1q'` in *COFF*) DUMPBIN="$DUMPBIN -symbols" ;; *) DUMPBIN=: ;; esac fi if test "$DUMPBIN" != ":"; then NM="$DUMPBIN" fi fi test -z "$NM" && NM=nm { $as_echo "$as_me:${as_lineno-$LINENO}: checking the name lister ($NM) interface" >&5 $as_echo_n "checking the name lister ($NM) interface... " >&6; } if ${lt_cv_nm_interface+:} false; then : $as_echo_n "(cached) " >&6 else lt_cv_nm_interface="BSD nm" echo "int some_variable = 0;" > conftest.$ac_ext (eval echo "\"\$as_me:$LINENO: $ac_compile\"" >&5) (eval "$ac_compile" 2>conftest.err) cat conftest.err >&5 (eval echo "\"\$as_me:$LINENO: $NM \\\"conftest.$ac_objext\\\"\"" >&5) (eval "$NM \"conftest.$ac_objext\"" 2>conftest.err > conftest.out) cat conftest.err >&5 (eval echo "\"\$as_me:$LINENO: output\"" >&5) cat conftest.out >&5 if $GREP 'External.*some_variable' conftest.out > /dev/null; then lt_cv_nm_interface="MS dumpbin" fi rm -f conftest* fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_nm_interface" >&5 $as_echo "$lt_cv_nm_interface" >&6; } { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether ln -s works" >&5 $as_echo_n "checking whether ln -s works... " >&6; } LN_S=$as_ln_s if test "$LN_S" = "ln -s"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 $as_echo "yes" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no, using $LN_S" >&5 $as_echo "no, using $LN_S" >&6; } fi # find the maximum length of command line arguments { $as_echo "$as_me:${as_lineno-$LINENO}: checking the maximum length of command line arguments" >&5 $as_echo_n "checking the maximum length of command line arguments... " >&6; } if ${lt_cv_sys_max_cmd_len+:} false; then : $as_echo_n "(cached) " >&6 else i=0 teststring="ABCD" case $build_os in msdosdjgpp*) # On DJGPP, this test can blow up pretty badly due to problems in libc # (any single argument exceeding 2000 bytes causes a buffer overrun # during glob expansion). Even if it were fixed, the result of this # check would be larger than it should be. lt_cv_sys_max_cmd_len=12288; # 12K is about right ;; gnu*) # Under GNU Hurd, this test is not required because there is # no limit to the length of command line arguments. # Libtool will interpret -1 as no limit whatsoever lt_cv_sys_max_cmd_len=-1; ;; cygwin* | mingw* | cegcc*) # On Win9x/ME, this test blows up -- it succeeds, but takes # about 5 minutes as the teststring grows exponentially. # Worse, since 9x/ME are not pre-emptively multitasking, # you end up with a "frozen" computer, even though with patience # the test eventually succeeds (with a max line length of 256k). # Instead, let's just punt: use the minimum linelength reported by # all of the supported platforms: 8192 (on NT/2K/XP). lt_cv_sys_max_cmd_len=8192; ;; mint*) # On MiNT this can take a long time and run out of memory. lt_cv_sys_max_cmd_len=8192; ;; amigaos*) # On AmigaOS with pdksh, this test takes hours, literally. # So we just punt and use a minimum line length of 8192. lt_cv_sys_max_cmd_len=8192; ;; netbsd* | freebsd* | openbsd* | darwin* | dragonfly*) # This has been around since 386BSD, at least. Likely further. if test -x /sbin/sysctl; then lt_cv_sys_max_cmd_len=`/sbin/sysctl -n kern.argmax` elif test -x /usr/sbin/sysctl; then lt_cv_sys_max_cmd_len=`/usr/sbin/sysctl -n kern.argmax` else lt_cv_sys_max_cmd_len=65536 # usable default for all BSDs fi # And add a safety zone lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 4` lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \* 3` ;; interix*) # We know the value 262144 and hardcode it with a safety zone (like BSD) lt_cv_sys_max_cmd_len=196608 ;; os2*) # The test takes a long time on OS/2. lt_cv_sys_max_cmd_len=8192 ;; osf*) # Dr. Hans Ekkehard Plesser reports seeing a kernel panic running configure # due to this test when exec_disable_arg_limit is 1 on Tru64. It is not # nice to cause kernel panics so lets avoid the loop below. # First set a reasonable default. lt_cv_sys_max_cmd_len=16384 # if test -x /sbin/sysconfig; then case `/sbin/sysconfig -q proc exec_disable_arg_limit` in *1*) lt_cv_sys_max_cmd_len=-1 ;; esac fi ;; sco3.2v5*) lt_cv_sys_max_cmd_len=102400 ;; sysv5* | sco5v6* | sysv4.2uw2*) kargmax=`grep ARG_MAX /etc/conf/cf.d/stune 2>/dev/null` if test -n "$kargmax"; then lt_cv_sys_max_cmd_len=`echo $kargmax | sed 's/.*[ ]//'` else lt_cv_sys_max_cmd_len=32768 fi ;; *) lt_cv_sys_max_cmd_len=`(getconf ARG_MAX) 2> /dev/null` if test -n "$lt_cv_sys_max_cmd_len" && \ test undefined != "$lt_cv_sys_max_cmd_len"; then lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 4` lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \* 3` else # Make teststring a little bigger before we do anything with it. # a 1K string should be a reasonable start. for i in 1 2 3 4 5 6 7 8 ; do teststring=$teststring$teststring done SHELL=${SHELL-${CONFIG_SHELL-/bin/sh}} # If test is not a shell built-in, we'll probably end up computing a # maximum length that is only half of the actual maximum length, but # we can't tell. while { test "X"`env echo "$teststring$teststring" 2>/dev/null` \ = "X$teststring$teststring"; } >/dev/null 2>&1 && test $i != 17 # 1/2 MB should be enough do i=`expr $i + 1` teststring=$teststring$teststring done # Only check the string length outside the loop. lt_cv_sys_max_cmd_len=`expr "X$teststring" : ".*" 2>&1` teststring= # Add a significant safety factor because C++ compilers can tack on # massive amounts of additional arguments before passing them to the # linker. It appears as though 1/2 is a usable value. lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 2` fi ;; esac fi if test -n $lt_cv_sys_max_cmd_len ; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_sys_max_cmd_len" >&5 $as_echo "$lt_cv_sys_max_cmd_len" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: none" >&5 $as_echo "none" >&6; } fi max_cmd_len=$lt_cv_sys_max_cmd_len : ${CP="cp -f"} : ${MV="mv -f"} : ${RM="rm -f"} { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether the shell understands some XSI constructs" >&5 $as_echo_n "checking whether the shell understands some XSI constructs... 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" >&6; } if ${lt_cv_to_host_file_cmd+:} false; then : $as_echo_n "(cached) " >&6 else case $host in *-*-mingw* ) case $build in *-*-mingw* ) # actually msys lt_cv_to_host_file_cmd=func_convert_file_msys_to_w32 ;; *-*-cygwin* ) lt_cv_to_host_file_cmd=func_convert_file_cygwin_to_w32 ;; * ) # otherwise, assume *nix lt_cv_to_host_file_cmd=func_convert_file_nix_to_w32 ;; esac ;; *-*-cygwin* ) case $build in *-*-mingw* ) # actually msys lt_cv_to_host_file_cmd=func_convert_file_msys_to_cygwin ;; *-*-cygwin* ) lt_cv_to_host_file_cmd=func_convert_file_noop ;; * ) # otherwise, assume *nix lt_cv_to_host_file_cmd=func_convert_file_nix_to_cygwin ;; esac ;; * ) # unhandled hosts (and "normal" native builds) lt_cv_to_host_file_cmd=func_convert_file_noop ;; esac fi to_host_file_cmd=$lt_cv_to_host_file_cmd { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_to_host_file_cmd" >&5 $as_echo "$lt_cv_to_host_file_cmd" >&6; } { $as_echo "$as_me:${as_lineno-$LINENO}: checking how to convert $build file names to toolchain format" >&5 $as_echo_n "checking how to convert $build file names to toolchain format... " >&6; } if ${lt_cv_to_tool_file_cmd+:} false; then : $as_echo_n "(cached) " >&6 else #assume ordinary cross tools, or native build. lt_cv_to_tool_file_cmd=func_convert_file_noop case $host in *-*-mingw* ) case $build in *-*-mingw* ) # actually msys lt_cv_to_tool_file_cmd=func_convert_file_msys_to_w32 ;; esac ;; esac fi to_tool_file_cmd=$lt_cv_to_tool_file_cmd { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_to_tool_file_cmd" >&5 $as_echo "$lt_cv_to_tool_file_cmd" >&6; } { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $LD option to reload object files" >&5 $as_echo_n "checking for $LD option to reload object files... " >&6; } if ${lt_cv_ld_reload_flag+:} false; then : $as_echo_n "(cached) " >&6 else lt_cv_ld_reload_flag='-r' fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_ld_reload_flag" >&5 $as_echo "$lt_cv_ld_reload_flag" >&6; } reload_flag=$lt_cv_ld_reload_flag case $reload_flag in "" | " "*) ;; *) reload_flag=" $reload_flag" ;; esac reload_cmds='$LD$reload_flag -o $output$reload_objs' case $host_os in cygwin* | mingw* | pw32* | cegcc*) if test "$GCC" != yes; then reload_cmds=false fi ;; darwin*) if test "$GCC" = yes; then reload_cmds='$LTCC $LTCFLAGS -nostdlib ${wl}-r -o $output$reload_objs' else reload_cmds='$LD$reload_flag -o $output$reload_objs' fi ;; esac if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}objdump", so it can be a program name with args. set dummy ${ac_tool_prefix}objdump; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_OBJDUMP+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$OBJDUMP"; then ac_cv_prog_OBJDUMP="$OBJDUMP" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_OBJDUMP="${ac_tool_prefix}objdump" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi OBJDUMP=$ac_cv_prog_OBJDUMP if test -n "$OBJDUMP"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $OBJDUMP" >&5 $as_echo "$OBJDUMP" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi fi if test -z "$ac_cv_prog_OBJDUMP"; then ac_ct_OBJDUMP=$OBJDUMP # Extract the first word of "objdump", so it can be a program name with args. set dummy objdump; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_OBJDUMP+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_OBJDUMP"; then ac_cv_prog_ac_ct_OBJDUMP="$ac_ct_OBJDUMP" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_OBJDUMP="objdump" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_OBJDUMP=$ac_cv_prog_ac_ct_OBJDUMP if test -n "$ac_ct_OBJDUMP"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_OBJDUMP" >&5 $as_echo "$ac_ct_OBJDUMP" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi if test "x$ac_ct_OBJDUMP" = x; then OBJDUMP="false" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac OBJDUMP=$ac_ct_OBJDUMP fi else OBJDUMP="$ac_cv_prog_OBJDUMP" fi test -z "$OBJDUMP" && OBJDUMP=objdump { $as_echo "$as_me:${as_lineno-$LINENO}: checking how to recognize dependent libraries" >&5 $as_echo_n "checking how to recognize dependent libraries... " >&6; } if ${lt_cv_deplibs_check_method+:} false; then : $as_echo_n "(cached) " >&6 else lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_deplibs_check_method='unknown' # Need to set the preceding variable on all platforms that support # interlibrary dependencies. # 'none' -- dependencies not supported. # `unknown' -- same as none, but documents that we really don't know. # 'pass_all' -- all dependencies passed with no checks. # 'test_compile' -- check by making test program. # 'file_magic [[regex]]' -- check by looking for files in library path # which responds to the $file_magic_cmd with a given extended regex. # If you have `file' or equivalent on your system and you're not sure # whether `pass_all' will *always* work, you probably want this one. case $host_os in aix[4-9]*) lt_cv_deplibs_check_method=pass_all ;; beos*) lt_cv_deplibs_check_method=pass_all ;; bsdi[45]*) lt_cv_deplibs_check_method='file_magic ELF [0-9][0-9]*-bit [ML]SB (shared object|dynamic lib)' lt_cv_file_magic_cmd='/usr/bin/file -L' lt_cv_file_magic_test_file=/shlib/libc.so ;; cygwin*) # func_win32_libid is a shell function defined in ltmain.sh lt_cv_deplibs_check_method='file_magic ^x86 archive import|^x86 DLL' lt_cv_file_magic_cmd='func_win32_libid' ;; mingw* | pw32*) # Base MSYS/MinGW do not provide the 'file' command needed by # func_win32_libid shell function, so use a weaker test based on 'objdump', # unless we find 'file', for example because we are cross-compiling. # func_win32_libid assumes BSD nm, so disallow it if using MS dumpbin. if ( test "$lt_cv_nm_interface" = "BSD nm" && file / ) >/dev/null 2>&1; then lt_cv_deplibs_check_method='file_magic ^x86 archive import|^x86 DLL' lt_cv_file_magic_cmd='func_win32_libid' else # Keep this pattern in sync with the one in func_win32_libid. lt_cv_deplibs_check_method='file_magic file format (pei*-i386(.*architecture: i386)?|pe-arm-wince|pe-x86-64)' lt_cv_file_magic_cmd='$OBJDUMP -f' fi ;; cegcc*) # use the weaker test based on 'objdump'. See mingw*. lt_cv_deplibs_check_method='file_magic file format pe-arm-.*little(.*architecture: arm)?' lt_cv_file_magic_cmd='$OBJDUMP -f' ;; darwin* | rhapsody*) lt_cv_deplibs_check_method=pass_all ;; freebsd* | dragonfly*) if echo __ELF__ | $CC -E - | $GREP __ELF__ > /dev/null; then case $host_cpu in i*86 ) # Not sure whether the presence of OpenBSD here was a mistake. # Let's accept both of them until this is cleared up. lt_cv_deplibs_check_method='file_magic (FreeBSD|OpenBSD|DragonFly)/i[3-9]86 (compact )?demand paged shared library' lt_cv_file_magic_cmd=/usr/bin/file lt_cv_file_magic_test_file=`echo /usr/lib/libc.so.*` ;; esac else lt_cv_deplibs_check_method=pass_all fi ;; haiku*) lt_cv_deplibs_check_method=pass_all ;; hpux10.20* | hpux11*) lt_cv_file_magic_cmd=/usr/bin/file case $host_cpu in ia64*) lt_cv_deplibs_check_method='file_magic (s[0-9][0-9][0-9]|ELF-[0-9][0-9]) shared object file - IA64' lt_cv_file_magic_test_file=/usr/lib/hpux32/libc.so ;; hppa*64*) lt_cv_deplibs_check_method='file_magic (s[0-9][0-9][0-9]|ELF[ -][0-9][0-9])(-bit)?( [LM]SB)? shared object( file)?[, -]* PA-RISC [0-9]\.[0-9]' lt_cv_file_magic_test_file=/usr/lib/pa20_64/libc.sl ;; *) lt_cv_deplibs_check_method='file_magic (s[0-9][0-9][0-9]|PA-RISC[0-9]\.[0-9]) shared library' lt_cv_file_magic_test_file=/usr/lib/libc.sl ;; esac ;; interix[3-9]*) # PIC code is broken on Interix 3.x, that's why |\.a not |_pic\.a here lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so|\.a)$' ;; irix5* | irix6* | nonstopux*) case $LD in *-32|*"-32 ") libmagic=32-bit;; *-n32|*"-n32 ") libmagic=N32;; *-64|*"-64 ") libmagic=64-bit;; *) libmagic=never-match;; esac lt_cv_deplibs_check_method=pass_all ;; # This must be glibc/ELF. linux* | k*bsd*-gnu | kopensolaris*-gnu | gnu*) lt_cv_deplibs_check_method=pass_all ;; netbsd* | netbsdelf*-gnu) if echo __ELF__ | $CC -E - | $GREP __ELF__ > /dev/null; then lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so\.[0-9]+\.[0-9]+|_pic\.a)$' else lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so|_pic\.a)$' fi ;; newos6*) lt_cv_deplibs_check_method='file_magic ELF [0-9][0-9]*-bit [ML]SB (executable|dynamic lib)' lt_cv_file_magic_cmd=/usr/bin/file lt_cv_file_magic_test_file=/usr/lib/libnls.so ;; *nto* | *qnx*) lt_cv_deplibs_check_method=pass_all ;; openbsd*) if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so\.[0-9]+\.[0-9]+|\.so|_pic\.a)$' else lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so\.[0-9]+\.[0-9]+|_pic\.a)$' fi ;; osf3* | osf4* | osf5*) lt_cv_deplibs_check_method=pass_all ;; rdos*) lt_cv_deplibs_check_method=pass_all ;; solaris*) lt_cv_deplibs_check_method=pass_all ;; sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX* | sysv4*uw2*) lt_cv_deplibs_check_method=pass_all ;; sysv4 | sysv4.3*) case $host_vendor in motorola) lt_cv_deplibs_check_method='file_magic ELF [0-9][0-9]*-bit [ML]SB (shared object|dynamic lib) M[0-9][0-9]* Version [0-9]' lt_cv_file_magic_test_file=`echo /usr/lib/libc.so*` ;; ncr) lt_cv_deplibs_check_method=pass_all ;; sequent) lt_cv_file_magic_cmd='/bin/file' lt_cv_deplibs_check_method='file_magic ELF [0-9][0-9]*-bit [LM]SB (shared object|dynamic lib )' ;; sni) lt_cv_file_magic_cmd='/bin/file' lt_cv_deplibs_check_method="file_magic ELF [0-9][0-9]*-bit [LM]SB dynamic lib" lt_cv_file_magic_test_file=/lib/libc.so ;; siemens) lt_cv_deplibs_check_method=pass_all ;; pc) lt_cv_deplibs_check_method=pass_all ;; esac ;; tpf*) lt_cv_deplibs_check_method=pass_all ;; esac fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_deplibs_check_method" >&5 $as_echo "$lt_cv_deplibs_check_method" >&6; } file_magic_glob= want_nocaseglob=no if test "$build" = "$host"; then case $host_os in mingw* | pw32*) if ( shopt | grep nocaseglob ) >/dev/null 2>&1; then want_nocaseglob=yes else file_magic_glob=`echo aAbBcCdDeEfFgGhHiIjJkKlLmMnNoOpPqQrRsStTuUvVwWxXyYzZ | $SED -e "s/\(..\)/s\/[\1]\/[\1]\/g;/g"` fi ;; esac fi file_magic_cmd=$lt_cv_file_magic_cmd deplibs_check_method=$lt_cv_deplibs_check_method test -z "$deplibs_check_method" && deplibs_check_method=unknown if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}dlltool", so it can be a program name with args. set dummy ${ac_tool_prefix}dlltool; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_DLLTOOL+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$DLLTOOL"; then ac_cv_prog_DLLTOOL="$DLLTOOL" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_DLLTOOL="${ac_tool_prefix}dlltool" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi DLLTOOL=$ac_cv_prog_DLLTOOL if test -n "$DLLTOOL"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $DLLTOOL" >&5 $as_echo "$DLLTOOL" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi fi if test -z "$ac_cv_prog_DLLTOOL"; then ac_ct_DLLTOOL=$DLLTOOL # Extract the first word of "dlltool", so it can be a program name with args. set dummy dlltool; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_DLLTOOL+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_DLLTOOL"; then ac_cv_prog_ac_ct_DLLTOOL="$ac_ct_DLLTOOL" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_DLLTOOL="dlltool" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_DLLTOOL=$ac_cv_prog_ac_ct_DLLTOOL if test -n "$ac_ct_DLLTOOL"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_DLLTOOL" >&5 $as_echo "$ac_ct_DLLTOOL" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi if test "x$ac_ct_DLLTOOL" = x; then DLLTOOL="false" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac DLLTOOL=$ac_ct_DLLTOOL fi else DLLTOOL="$ac_cv_prog_DLLTOOL" fi test -z "$DLLTOOL" && DLLTOOL=dlltool { $as_echo "$as_me:${as_lineno-$LINENO}: checking how to associate runtime and link libraries" >&5 $as_echo_n "checking how to associate runtime and link libraries... " >&6; } if ${lt_cv_sharedlib_from_linklib_cmd+:} false; then : $as_echo_n "(cached) " >&6 else lt_cv_sharedlib_from_linklib_cmd='unknown' case $host_os in cygwin* | mingw* | pw32* | cegcc*) # two different shell functions defined in ltmain.sh # decide which to use based on capabilities of $DLLTOOL case `$DLLTOOL --help 2>&1` in *--identify-strict*) lt_cv_sharedlib_from_linklib_cmd=func_cygming_dll_for_implib ;; *) lt_cv_sharedlib_from_linklib_cmd=func_cygming_dll_for_implib_fallback ;; esac ;; *) # fallback: assume linklib IS sharedlib lt_cv_sharedlib_from_linklib_cmd="$ECHO" ;; esac fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_sharedlib_from_linklib_cmd" >&5 $as_echo "$lt_cv_sharedlib_from_linklib_cmd" >&6; } sharedlib_from_linklib_cmd=$lt_cv_sharedlib_from_linklib_cmd test -z "$sharedlib_from_linklib_cmd" && sharedlib_from_linklib_cmd=$ECHO if test -n "$ac_tool_prefix"; then for ac_prog in ar do # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. set dummy $ac_tool_prefix$ac_prog; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_AR+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$AR"; then ac_cv_prog_AR="$AR" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_AR="$ac_tool_prefix$ac_prog" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi AR=$ac_cv_prog_AR if test -n "$AR"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $AR" >&5 $as_echo "$AR" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi test -n "$AR" && break done fi if test -z "$AR"; then ac_ct_AR=$AR for ac_prog in ar do # Extract the first word of "$ac_prog", so it can be a program name with args. set dummy $ac_prog; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_AR+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_AR"; then ac_cv_prog_ac_ct_AR="$ac_ct_AR" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_AR="$ac_prog" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_AR=$ac_cv_prog_ac_ct_AR if test -n "$ac_ct_AR"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_AR" >&5 $as_echo "$ac_ct_AR" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi test -n "$ac_ct_AR" && break done if test "x$ac_ct_AR" = x; then AR="false" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac AR=$ac_ct_AR fi fi : ${AR=ar} : ${AR_FLAGS=cru} { $as_echo "$as_me:${as_lineno-$LINENO}: checking for archiver @FILE support" >&5 $as_echo_n "checking for archiver @FILE support... " >&6; } if ${lt_cv_ar_at_file+:} false; then : $as_echo_n "(cached) " >&6 else lt_cv_ar_at_file=no cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ int main () { ; return 0; } _ACEOF if ac_fn_c_try_compile "$LINENO"; then : echo conftest.$ac_objext > conftest.lst lt_ar_try='$AR $AR_FLAGS libconftest.a @conftest.lst >&5' { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$lt_ar_try\""; } >&5 (eval $lt_ar_try) 2>&5 ac_status=$? $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 test $ac_status = 0; } if test "$ac_status" -eq 0; then # Ensure the archiver fails upon bogus file names. rm -f conftest.$ac_objext libconftest.a { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$lt_ar_try\""; } >&5 (eval $lt_ar_try) 2>&5 ac_status=$? $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 test $ac_status = 0; } if test "$ac_status" -ne 0; then lt_cv_ar_at_file=@ fi fi rm -f conftest.* libconftest.a fi rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_ar_at_file" >&5 $as_echo "$lt_cv_ar_at_file" >&6; } if test "x$lt_cv_ar_at_file" = xno; then archiver_list_spec= else archiver_list_spec=$lt_cv_ar_at_file fi if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}strip", so it can be a program name with args. set dummy ${ac_tool_prefix}strip; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_STRIP+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$STRIP"; then ac_cv_prog_STRIP="$STRIP" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_STRIP="${ac_tool_prefix}strip" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi STRIP=$ac_cv_prog_STRIP if test -n "$STRIP"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $STRIP" >&5 $as_echo "$STRIP" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi fi if test -z "$ac_cv_prog_STRIP"; then ac_ct_STRIP=$STRIP # Extract the first word of "strip", so it can be a program name with args. set dummy strip; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_STRIP+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_STRIP"; then ac_cv_prog_ac_ct_STRIP="$ac_ct_STRIP" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_STRIP="strip" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_STRIP=$ac_cv_prog_ac_ct_STRIP if test -n "$ac_ct_STRIP"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_STRIP" >&5 $as_echo "$ac_ct_STRIP" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi if test "x$ac_ct_STRIP" = x; then STRIP=":" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac STRIP=$ac_ct_STRIP fi else STRIP="$ac_cv_prog_STRIP" fi test -z "$STRIP" && STRIP=: if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}ranlib", so it can be a program name with args. set dummy ${ac_tool_prefix}ranlib; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_RANLIB+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$RANLIB"; then ac_cv_prog_RANLIB="$RANLIB" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_RANLIB="${ac_tool_prefix}ranlib" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi RANLIB=$ac_cv_prog_RANLIB if test -n "$RANLIB"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $RANLIB" >&5 $as_echo "$RANLIB" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi fi if test -z "$ac_cv_prog_RANLIB"; then ac_ct_RANLIB=$RANLIB # Extract the first word of "ranlib", so it can be a program name with args. set dummy ranlib; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_RANLIB+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_RANLIB"; then ac_cv_prog_ac_ct_RANLIB="$ac_ct_RANLIB" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_RANLIB="ranlib" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_RANLIB=$ac_cv_prog_ac_ct_RANLIB if test -n "$ac_ct_RANLIB"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_RANLIB" >&5 $as_echo "$ac_ct_RANLIB" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi if test "x$ac_ct_RANLIB" = x; then RANLIB=":" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac RANLIB=$ac_ct_RANLIB fi else RANLIB="$ac_cv_prog_RANLIB" fi test -z "$RANLIB" && RANLIB=: # Determine commands to create old-style static archives. old_archive_cmds='$AR $AR_FLAGS $oldlib$oldobjs' old_postinstall_cmds='chmod 644 $oldlib' old_postuninstall_cmds= if test -n "$RANLIB"; then case $host_os in openbsd*) old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB -t \$tool_oldlib" ;; *) old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB \$tool_oldlib" ;; esac old_archive_cmds="$old_archive_cmds~\$RANLIB \$tool_oldlib" fi case $host_os in darwin*) lock_old_archive_extraction=yes ;; *) lock_old_archive_extraction=no ;; esac # If no C compiler was specified, use CC. LTCC=${LTCC-"$CC"} # If no C compiler flags were specified, use CFLAGS. LTCFLAGS=${LTCFLAGS-"$CFLAGS"} # Allow CC to be a program name with arguments. compiler=$CC # Check for command to grab the raw symbol name followed by C symbol from nm. { $as_echo "$as_me:${as_lineno-$LINENO}: checking command to parse $NM output from $compiler object" >&5 $as_echo_n "checking command to parse $NM output from $compiler object... " >&6; } if ${lt_cv_sys_global_symbol_pipe+:} false; then : $as_echo_n "(cached) " >&6 else # These are sane defaults that work on at least a few old systems. # [They come from Ultrix. What could be older than Ultrix?!! ;)] # Character class describing NM global symbol codes. symcode='[BCDEGRST]' # Regexp to match symbols that can be accessed directly from C. sympat='\([_A-Za-z][_A-Za-z0-9]*\)' # Define system-specific variables. case $host_os in aix*) symcode='[BCDT]' ;; cygwin* | mingw* | pw32* | cegcc*) symcode='[ABCDGISTW]' ;; hpux*) if test "$host_cpu" = ia64; then symcode='[ABCDEGRST]' fi ;; irix* | nonstopux*) symcode='[BCDEGRST]' ;; osf*) symcode='[BCDEGQRST]' ;; solaris*) symcode='[BDRT]' ;; sco3.2v5*) symcode='[DT]' ;; sysv4.2uw2*) symcode='[DT]' ;; sysv5* | sco5v6* | unixware* | OpenUNIX*) symcode='[ABDT]' ;; sysv4) symcode='[DFNSTU]' ;; esac # If we're using GNU nm, then use its standard symbol codes. case `$NM -V 2>&1` in *GNU* | *'with BFD'*) symcode='[ABCDGIRSTW]' ;; esac # Transform an extracted symbol line into a proper C declaration. # Some systems (esp. on ia64) link data and code symbols differently, # so use this general approach. lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" # Transform an extracted symbol line into symbol name and symbol address lt_cv_sys_global_symbol_to_c_name_address="sed -n -e 's/^: \([^ ]*\)[ ]*$/ {\\\"\1\\\", (void *) 0},/p' -e 's/^$symcode* \([^ ]*\) \([^ ]*\)$/ {\"\2\", (void *) \&\2},/p'" lt_cv_sys_global_symbol_to_c_name_address_lib_prefix="sed -n -e 's/^: \([^ ]*\)[ ]*$/ {\\\"\1\\\", (void *) 0},/p' -e 's/^$symcode* \([^ ]*\) \(lib[^ ]*\)$/ {\"\2\", (void *) \&\2},/p' -e 's/^$symcode* \([^ ]*\) \([^ ]*\)$/ {\"lib\2\", (void *) \&\2},/p'" # Handle CRLF in mingw tool chain opt_cr= case $build_os in mingw*) opt_cr=`$ECHO 'x\{0,1\}' | tr x '\015'` # option cr in regexp ;; esac # Try without a prefix underscore, then with it. for ac_symprfx in "" "_"; do # Transform symcode, sympat, and symprfx into a raw symbol and a C symbol. symxfrm="\\1 $ac_symprfx\\2 \\2" # Write the raw and C identifiers. if test "$lt_cv_nm_interface" = "MS dumpbin"; then # Fake it for dumpbin and say T for any non-static function # and D for any global variable. # Also find C++ and __fastcall symbols from MSVC++, # which start with @ or ?. lt_cv_sys_global_symbol_pipe="$AWK '"\ " {last_section=section; section=\$ 3};"\ " /^COFF SYMBOL TABLE/{for(i in hide) delete hide[i]};"\ " /Section length .*#relocs.*(pick any)/{hide[last_section]=1};"\ " \$ 0!~/External *\|/{next};"\ " / 0+ UNDEF /{next}; / UNDEF \([^|]\)*()/{next};"\ " {if(hide[section]) next};"\ " {f=0}; \$ 0~/\(\).*\|/{f=1}; {printf f ? \"T \" : \"D \"};"\ " {split(\$ 0, a, /\||\r/); split(a[2], s)};"\ " s[1]~/^[@?]/{print s[1], s[1]; next};"\ " s[1]~prfx {split(s[1],t,\"@\"); print t[1], substr(t[1],length(prfx))}"\ " ' prfx=^$ac_symprfx" else lt_cv_sys_global_symbol_pipe="sed -n -e 's/^.*[ ]\($symcode$symcode*\)[ ][ ]*$ac_symprfx$sympat$opt_cr$/$symxfrm/p'" fi lt_cv_sys_global_symbol_pipe="$lt_cv_sys_global_symbol_pipe | sed '/ __gnu_lto/d'" # Check to see that the pipe works correctly. pipe_works=no rm -f conftest* cat > conftest.$ac_ext <<_LT_EOF #ifdef __cplusplus extern "C" { #endif char nm_test_var; void nm_test_func(void); void nm_test_func(void){} #ifdef __cplusplus } #endif int main(){nm_test_var='a';nm_test_func();return(0);} _LT_EOF if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_compile\""; } >&5 (eval $ac_compile) 2>&5 ac_status=$? $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 test $ac_status = 0; }; then # Now try to grab the symbols. nlist=conftest.nm if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$NM conftest.$ac_objext \| "$lt_cv_sys_global_symbol_pipe" \> $nlist\""; } >&5 (eval $NM conftest.$ac_objext \| "$lt_cv_sys_global_symbol_pipe" \> $nlist) 2>&5 ac_status=$? $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 test $ac_status = 0; } && test -s "$nlist"; then # Try sorting and uniquifying the output. if sort "$nlist" | uniq > "$nlist"T; then mv -f "$nlist"T "$nlist" else rm -f "$nlist"T fi # Make sure that we snagged all the symbols we need. if $GREP ' nm_test_var$' "$nlist" >/dev/null; then if $GREP ' nm_test_func$' "$nlist" >/dev/null; then cat <<_LT_EOF > conftest.$ac_ext /* Keep this code in sync between libtool.m4, ltmain, lt_system.h, and tests. */ #if defined(_WIN32) || defined(__CYGWIN__) || defined(_WIN32_WCE) /* DATA imports from DLLs on WIN32 con't be const, because runtime relocations are performed -- see ld's documentation on pseudo-relocs. */ # define LT_DLSYM_CONST #elif defined(__osf__) /* This system does not cope well with relocations in const data. */ # define LT_DLSYM_CONST #else # define LT_DLSYM_CONST const #endif #ifdef __cplusplus extern "C" { #endif _LT_EOF # Now generate the symbol file. eval "$lt_cv_sys_global_symbol_to_cdecl"' < "$nlist" | $GREP -v main >> conftest.$ac_ext' cat <<_LT_EOF >> conftest.$ac_ext /* The mapping between symbol names and symbols. */ LT_DLSYM_CONST struct { const char *name; void *address; } lt__PROGRAM__LTX_preloaded_symbols[] = { { "@PROGRAM@", (void *) 0 }, _LT_EOF $SED "s/^$symcode$symcode* \(.*\) \(.*\)$/ {\"\2\", (void *) \&\2},/" < "$nlist" | $GREP -v main >> conftest.$ac_ext cat <<\_LT_EOF >> conftest.$ac_ext {0, (void *) 0} }; /* This works around a problem in FreeBSD linker */ #ifdef FREEBSD_WORKAROUND static const void *lt_preloaded_setup() { return lt__PROGRAM__LTX_preloaded_symbols; } #endif #ifdef __cplusplus } #endif _LT_EOF # Now try linking the two files. mv conftest.$ac_objext conftstm.$ac_objext lt_globsym_save_LIBS=$LIBS lt_globsym_save_CFLAGS=$CFLAGS LIBS="conftstm.$ac_objext" CFLAGS="$CFLAGS$lt_prog_compiler_no_builtin_flag" if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_link\""; } >&5 (eval $ac_link) 2>&5 ac_status=$? $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 test $ac_status = 0; } && test -s conftest${ac_exeext}; then pipe_works=yes fi LIBS=$lt_globsym_save_LIBS CFLAGS=$lt_globsym_save_CFLAGS else echo "cannot find nm_test_func in $nlist" >&5 fi else echo "cannot find nm_test_var in $nlist" >&5 fi else echo "cannot run $lt_cv_sys_global_symbol_pipe" >&5 fi else echo "$progname: failed program was:" >&5 cat conftest.$ac_ext >&5 fi rm -rf conftest* conftst* # Do not use the global_symbol_pipe unless it works. if test "$pipe_works" = yes; then break else lt_cv_sys_global_symbol_pipe= fi done fi if test -z "$lt_cv_sys_global_symbol_pipe"; then lt_cv_sys_global_symbol_to_cdecl= fi if test -z "$lt_cv_sys_global_symbol_pipe$lt_cv_sys_global_symbol_to_cdecl"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: failed" >&5 $as_echo "failed" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: ok" >&5 $as_echo "ok" >&6; } fi # Response file support. if test "$lt_cv_nm_interface" = "MS dumpbin"; then nm_file_list_spec='@' elif $NM --help 2>/dev/null | grep '[@]FILE' >/dev/null; then nm_file_list_spec='@' fi { $as_echo "$as_me:${as_lineno-$LINENO}: checking for sysroot" >&5 $as_echo_n "checking for sysroot... " >&6; } # Check whether --with-sysroot was given. if test "${with_sysroot+set}" = set; then : withval=$with_sysroot; else with_sysroot=no fi lt_sysroot= case ${with_sysroot} in #( yes) if test "$GCC" = yes; then lt_sysroot=`$CC --print-sysroot 2>/dev/null` fi ;; #( /*) lt_sysroot=`echo "$with_sysroot" | sed -e "$sed_quote_subst"` ;; #( no|'') ;; #( *) { $as_echo "$as_me:${as_lineno-$LINENO}: result: ${with_sysroot}" >&5 $as_echo "${with_sysroot}" >&6; } as_fn_error $? "The sysroot must be an absolute path." "$LINENO" 5 ;; esac { $as_echo "$as_me:${as_lineno-$LINENO}: result: ${lt_sysroot:-no}" >&5 $as_echo "${lt_sysroot:-no}" >&6; } # Check whether --enable-libtool-lock was given. if test "${enable_libtool_lock+set}" = set; then : enableval=$enable_libtool_lock; fi test "x$enable_libtool_lock" != xno && enable_libtool_lock=yes # Some flags need to be propagated to the compiler or linker for good # libtool support. case $host in ia64-*-hpux*) # Find out which ABI we are using. echo 'int i;' > conftest.$ac_ext if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_compile\""; } >&5 (eval $ac_compile) 2>&5 ac_status=$? $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 test $ac_status = 0; }; then case `/usr/bin/file conftest.$ac_objext` in *ELF-32*) HPUX_IA64_MODE="32" ;; *ELF-64*) HPUX_IA64_MODE="64" ;; esac fi rm -rf conftest* ;; *-*-irix6*) # Find out which ABI we are using. echo '#line '$LINENO' "configure"' > conftest.$ac_ext if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_compile\""; } >&5 (eval $ac_compile) 2>&5 ac_status=$? $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 test $ac_status = 0; }; then if test "$lt_cv_prog_gnu_ld" = yes; then case `/usr/bin/file conftest.$ac_objext` in *32-bit*) LD="${LD-ld} -melf32bsmip" ;; *N32*) LD="${LD-ld} -melf32bmipn32" ;; *64-bit*) LD="${LD-ld} -melf64bmip" ;; esac else case `/usr/bin/file conftest.$ac_objext` in *32-bit*) LD="${LD-ld} -32" ;; *N32*) LD="${LD-ld} -n32" ;; *64-bit*) LD="${LD-ld} -64" ;; esac fi fi rm -rf conftest* ;; x86_64-*kfreebsd*-gnu|x86_64-*linux*|powerpc*-*linux*| \ s390*-*linux*|s390*-*tpf*|sparc*-*linux*) # Find out which ABI we are using. echo 'int i;' > conftest.$ac_ext if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_compile\""; } >&5 (eval $ac_compile) 2>&5 ac_status=$? $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 test $ac_status = 0; }; then case `/usr/bin/file conftest.o` in *32-bit*) case $host in x86_64-*kfreebsd*-gnu) LD="${LD-ld} -m elf_i386_fbsd" ;; x86_64-*linux*) case `/usr/bin/file conftest.o` in *x86-64*) LD="${LD-ld} -m elf32_x86_64" ;; *) LD="${LD-ld} -m elf_i386" ;; esac ;; powerpc64le-*) LD="${LD-ld} -m elf32lppclinux" ;; powerpc64-*) LD="${LD-ld} -m elf32ppclinux" ;; s390x-*linux*) LD="${LD-ld} -m elf_s390" ;; sparc64-*linux*) LD="${LD-ld} -m elf32_sparc" ;; esac ;; *64-bit*) case $host in x86_64-*kfreebsd*-gnu) LD="${LD-ld} -m elf_x86_64_fbsd" ;; x86_64-*linux*) LD="${LD-ld} -m elf_x86_64" ;; powerpcle-*) LD="${LD-ld} -m elf64lppc" ;; powerpc-*) LD="${LD-ld} -m elf64ppc" ;; s390*-*linux*|s390*-*tpf*) LD="${LD-ld} -m elf64_s390" ;; sparc*-*linux*) LD="${LD-ld} -m elf64_sparc" ;; esac ;; esac fi rm -rf conftest* ;; *-*-sco3.2v5*) # On SCO OpenServer 5, we need -belf to get full-featured binaries. SAVE_CFLAGS="$CFLAGS" CFLAGS="$CFLAGS -belf" { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether the C compiler needs -belf" >&5 $as_echo_n "checking whether the C compiler needs -belf... " >&6; } if ${lt_cv_cc_needs_belf+:} false; then : $as_echo_n "(cached) " >&6 else ac_ext=c ac_cpp='$CPP $CPPFLAGS' ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ac_compiler_gnu=$ac_cv_c_compiler_gnu cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ int main () { ; return 0; } _ACEOF if ac_fn_c_try_link "$LINENO"; then : lt_cv_cc_needs_belf=yes else lt_cv_cc_needs_belf=no fi rm -f core conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext ac_ext=c ac_cpp='$CPP $CPPFLAGS' ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ac_compiler_gnu=$ac_cv_c_compiler_gnu fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_cc_needs_belf" >&5 $as_echo "$lt_cv_cc_needs_belf" >&6; } if test x"$lt_cv_cc_needs_belf" != x"yes"; then # this is probably gcc 2.8.0, egcs 1.0 or newer; no need for -belf CFLAGS="$SAVE_CFLAGS" fi ;; *-*solaris*) # Find out which ABI we are using. echo 'int i;' > conftest.$ac_ext if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_compile\""; } >&5 (eval $ac_compile) 2>&5 ac_status=$? $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 test $ac_status = 0; }; then case `/usr/bin/file conftest.o` in *64-bit*) case $lt_cv_prog_gnu_ld in yes*) case $host in i?86-*-solaris*) LD="${LD-ld} -m elf_x86_64" ;; sparc*-*-solaris*) LD="${LD-ld} -m elf64_sparc" ;; esac # GNU ld 2.21 introduced _sol2 emulations. Use them if available. if ${LD-ld} -V | grep _sol2 >/dev/null 2>&1; then LD="${LD-ld}_sol2" fi ;; *) if ${LD-ld} -64 -r -o conftest2.o conftest.o >/dev/null 2>&1; then LD="${LD-ld} -64" fi ;; esac ;; esac fi rm -rf conftest* ;; esac need_locks="$enable_libtool_lock" if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}mt", so it can be a program name with args. set dummy ${ac_tool_prefix}mt; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_MANIFEST_TOOL+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$MANIFEST_TOOL"; then ac_cv_prog_MANIFEST_TOOL="$MANIFEST_TOOL" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_MANIFEST_TOOL="${ac_tool_prefix}mt" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi MANIFEST_TOOL=$ac_cv_prog_MANIFEST_TOOL if test -n "$MANIFEST_TOOL"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $MANIFEST_TOOL" >&5 $as_echo "$MANIFEST_TOOL" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi fi if test -z "$ac_cv_prog_MANIFEST_TOOL"; then ac_ct_MANIFEST_TOOL=$MANIFEST_TOOL # Extract the first word of "mt", so it can be a program name with args. set dummy mt; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_MANIFEST_TOOL+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_MANIFEST_TOOL"; then ac_cv_prog_ac_ct_MANIFEST_TOOL="$ac_ct_MANIFEST_TOOL" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_MANIFEST_TOOL="mt" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_MANIFEST_TOOL=$ac_cv_prog_ac_ct_MANIFEST_TOOL if test -n "$ac_ct_MANIFEST_TOOL"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_MANIFEST_TOOL" >&5 $as_echo "$ac_ct_MANIFEST_TOOL" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi if test "x$ac_ct_MANIFEST_TOOL" = x; then MANIFEST_TOOL=":" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac MANIFEST_TOOL=$ac_ct_MANIFEST_TOOL fi else MANIFEST_TOOL="$ac_cv_prog_MANIFEST_TOOL" fi test -z "$MANIFEST_TOOL" && MANIFEST_TOOL=mt { $as_echo "$as_me:${as_lineno-$LINENO}: checking if $MANIFEST_TOOL is a manifest tool" >&5 $as_echo_n "checking if $MANIFEST_TOOL is a manifest tool... " >&6; } if ${lt_cv_path_mainfest_tool+:} false; then : $as_echo_n "(cached) " >&6 else lt_cv_path_mainfest_tool=no echo "$as_me:$LINENO: $MANIFEST_TOOL '-?'" >&5 $MANIFEST_TOOL '-?' 2>conftest.err > conftest.out cat conftest.err >&5 if $GREP 'Manifest Tool' conftest.out > /dev/null; then lt_cv_path_mainfest_tool=yes fi rm -f conftest* fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_path_mainfest_tool" >&5 $as_echo "$lt_cv_path_mainfest_tool" >&6; } if test "x$lt_cv_path_mainfest_tool" != xyes; then MANIFEST_TOOL=: fi case $host_os in rhapsody* | darwin*) if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}dsymutil", so it can be a program name with args. set dummy ${ac_tool_prefix}dsymutil; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_DSYMUTIL+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$DSYMUTIL"; then ac_cv_prog_DSYMUTIL="$DSYMUTIL" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_DSYMUTIL="${ac_tool_prefix}dsymutil" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi DSYMUTIL=$ac_cv_prog_DSYMUTIL if test -n "$DSYMUTIL"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $DSYMUTIL" >&5 $as_echo "$DSYMUTIL" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi fi if test -z "$ac_cv_prog_DSYMUTIL"; then ac_ct_DSYMUTIL=$DSYMUTIL # Extract the first word of "dsymutil", so it can be a program name with args. set dummy dsymutil; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_DSYMUTIL+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_DSYMUTIL"; then ac_cv_prog_ac_ct_DSYMUTIL="$ac_ct_DSYMUTIL" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_DSYMUTIL="dsymutil" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_DSYMUTIL=$ac_cv_prog_ac_ct_DSYMUTIL if test -n "$ac_ct_DSYMUTIL"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_DSYMUTIL" >&5 $as_echo "$ac_ct_DSYMUTIL" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi if test "x$ac_ct_DSYMUTIL" = x; then DSYMUTIL=":" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac DSYMUTIL=$ac_ct_DSYMUTIL fi else DSYMUTIL="$ac_cv_prog_DSYMUTIL" fi if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}nmedit", so it can be a program name with args. set dummy ${ac_tool_prefix}nmedit; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_NMEDIT+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$NMEDIT"; then ac_cv_prog_NMEDIT="$NMEDIT" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_NMEDIT="${ac_tool_prefix}nmedit" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi NMEDIT=$ac_cv_prog_NMEDIT if test -n "$NMEDIT"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $NMEDIT" >&5 $as_echo "$NMEDIT" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi fi if test -z "$ac_cv_prog_NMEDIT"; then ac_ct_NMEDIT=$NMEDIT # Extract the first word of "nmedit", so it can be a program name with args. set dummy nmedit; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_NMEDIT+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_NMEDIT"; then ac_cv_prog_ac_ct_NMEDIT="$ac_ct_NMEDIT" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_NMEDIT="nmedit" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_NMEDIT=$ac_cv_prog_ac_ct_NMEDIT if test -n "$ac_ct_NMEDIT"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_NMEDIT" >&5 $as_echo "$ac_ct_NMEDIT" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi if test "x$ac_ct_NMEDIT" = x; then NMEDIT=":" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac NMEDIT=$ac_ct_NMEDIT fi else NMEDIT="$ac_cv_prog_NMEDIT" fi if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}lipo", so it can be a program name with args. set dummy ${ac_tool_prefix}lipo; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_LIPO+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$LIPO"; then ac_cv_prog_LIPO="$LIPO" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_LIPO="${ac_tool_prefix}lipo" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi LIPO=$ac_cv_prog_LIPO if test -n "$LIPO"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $LIPO" >&5 $as_echo "$LIPO" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi fi if test -z "$ac_cv_prog_LIPO"; then ac_ct_LIPO=$LIPO # Extract the first word of "lipo", so it can be a program name with args. set dummy lipo; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_LIPO+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_LIPO"; then ac_cv_prog_ac_ct_LIPO="$ac_ct_LIPO" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_LIPO="lipo" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_LIPO=$ac_cv_prog_ac_ct_LIPO if test -n "$ac_ct_LIPO"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_LIPO" >&5 $as_echo "$ac_ct_LIPO" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi if test "x$ac_ct_LIPO" = x; then LIPO=":" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac LIPO=$ac_ct_LIPO fi else LIPO="$ac_cv_prog_LIPO" fi if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}otool", so it can be a program name with args. set dummy ${ac_tool_prefix}otool; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_OTOOL+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$OTOOL"; then ac_cv_prog_OTOOL="$OTOOL" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_OTOOL="${ac_tool_prefix}otool" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi OTOOL=$ac_cv_prog_OTOOL if test -n "$OTOOL"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $OTOOL" >&5 $as_echo "$OTOOL" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi fi if test -z "$ac_cv_prog_OTOOL"; then ac_ct_OTOOL=$OTOOL # Extract the first word of "otool", so it can be a program name with args. set dummy otool; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_OTOOL+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_OTOOL"; then ac_cv_prog_ac_ct_OTOOL="$ac_ct_OTOOL" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_OTOOL="otool" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_OTOOL=$ac_cv_prog_ac_ct_OTOOL if test -n "$ac_ct_OTOOL"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_OTOOL" >&5 $as_echo "$ac_ct_OTOOL" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi if test "x$ac_ct_OTOOL" = x; then OTOOL=":" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac OTOOL=$ac_ct_OTOOL fi else OTOOL="$ac_cv_prog_OTOOL" fi if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}otool64", so it can be a program name with args. set dummy ${ac_tool_prefix}otool64; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_OTOOL64+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$OTOOL64"; then ac_cv_prog_OTOOL64="$OTOOL64" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_OTOOL64="${ac_tool_prefix}otool64" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi OTOOL64=$ac_cv_prog_OTOOL64 if test -n "$OTOOL64"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $OTOOL64" >&5 $as_echo "$OTOOL64" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi fi if test -z "$ac_cv_prog_OTOOL64"; then ac_ct_OTOOL64=$OTOOL64 # Extract the first word of "otool64", so it can be a program name with args. set dummy otool64; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_OTOOL64+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_OTOOL64"; then ac_cv_prog_ac_ct_OTOOL64="$ac_ct_OTOOL64" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_OTOOL64="otool64" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_OTOOL64=$ac_cv_prog_ac_ct_OTOOL64 if test -n "$ac_ct_OTOOL64"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_OTOOL64" >&5 $as_echo "$ac_ct_OTOOL64" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi if test "x$ac_ct_OTOOL64" = x; then OTOOL64=":" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac OTOOL64=$ac_ct_OTOOL64 fi else OTOOL64="$ac_cv_prog_OTOOL64" fi { $as_echo "$as_me:${as_lineno-$LINENO}: checking for -single_module linker flag" >&5 $as_echo_n "checking for -single_module linker flag... " >&6; } if ${lt_cv_apple_cc_single_mod+:} false; then : $as_echo_n "(cached) " >&6 else lt_cv_apple_cc_single_mod=no if test -z "${LT_MULTI_MODULE}"; then # By default we will add the -single_module flag. You can override # by either setting the environment variable LT_MULTI_MODULE # non-empty at configure time, or by adding -multi_module to the # link flags. rm -rf libconftest.dylib* echo "int foo(void){return 1;}" > conftest.c echo "$LTCC $LTCFLAGS $LDFLAGS -o libconftest.dylib \ -dynamiclib -Wl,-single_module conftest.c" >&5 $LTCC $LTCFLAGS $LDFLAGS -o libconftest.dylib \ -dynamiclib -Wl,-single_module conftest.c 2>conftest.err _lt_result=$? # If there is a non-empty error log, and "single_module" # appears in it, assume the flag caused a linker warning if test -s conftest.err && $GREP single_module conftest.err; then cat conftest.err >&5 # Otherwise, if the output was created with a 0 exit code from # the compiler, it worked. elif test -f libconftest.dylib && test $_lt_result -eq 0; then lt_cv_apple_cc_single_mod=yes else cat conftest.err >&5 fi rm -rf libconftest.dylib* rm -f conftest.* fi fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_apple_cc_single_mod" >&5 $as_echo "$lt_cv_apple_cc_single_mod" >&6; } { $as_echo "$as_me:${as_lineno-$LINENO}: checking for -exported_symbols_list linker flag" >&5 $as_echo_n "checking for -exported_symbols_list linker flag... 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Therefore, libtool *** is disabling shared libraries support. We urge you to upgrade GNU *** binutils to release 2.9.1 or newer. Another option is to modify *** your PATH or compiler configuration so that the native linker is *** used, and then restart. _LT_EOF elif $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then archive_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' archive_expsym_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib' else ld_shlibs=no fi ;; sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX*) case `$LD -v 2>&1` in *\ [01].* | *\ 2.[0-9].* | *\ 2.1[0-5].*) ld_shlibs=no cat <<_LT_EOF 1>&2 *** Warning: Releases of the GNU linker prior to 2.16.91.0.3 can not *** reliably create shared libraries on SCO systems. Therefore, libtool *** is disabling shared libraries support. We urge you to upgrade GNU *** binutils to release 2.16.91.0.3 or newer. Another option is to modify *** your PATH or compiler configuration so that the native linker is *** used, and then restart. _LT_EOF ;; *) # For security reasons, it is highly recommended that you always # use absolute paths for naming shared libraries, and exclude the # DT_RUNPATH tag from executables and libraries. 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then lt_cv_aix_libpath_=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"` fi fi rm -f core conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext if test -z "$lt_cv_aix_libpath_"; then lt_cv_aix_libpath_="/usr/lib:/lib" fi fi aix_libpath=$lt_cv_aix_libpath_ fi hardcode_libdir_flag_spec='${wl}-blibpath:$libdir:'"$aix_libpath" archive_expsym_cmds='$CC -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags `if test "x${allow_undefined_flag}" != "x"; then func_echo_all "${wl}${allow_undefined_flag}"; else :; fi` '"\${wl}$exp_sym_flag:\$export_symbols $shared_flag" else if test "$host_cpu" = ia64; then hardcode_libdir_flag_spec='${wl}-R $libdir:/usr/lib:/lib' allow_undefined_flag="-z nodefs" archive_expsym_cmds="\$CC $shared_flag"' -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags ${wl}${allow_undefined_flag} '"\${wl}$exp_sym_flag:\$export_symbols" else # Determine the default libpath from the value encoded in an # empty executable. if test "${lt_cv_aix_libpath+set}" = set; 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then # We only use this code for GNU lds that support --whole-archive. whole_archive_flag_spec='${wl}--whole-archive$convenience ${wl}--no-whole-archive' else # Exported symbols can be pulled into shared objects from archives whole_archive_flag_spec='$convenience' fi archive_cmds_need_lc=yes # This is similar to how AIX traditionally builds its shared libraries. archive_expsym_cmds="\$CC $shared_flag"' -o $output_objdir/$soname $libobjs $deplibs ${wl}-bnoentry $compiler_flags ${wl}-bE:$export_symbols${allow_undefined_flag}~$AR $AR_FLAGS $output_objdir/$libname$release.a $output_objdir/$soname' fi fi ;; amigaos*) case $host_cpu in powerpc) # see comment about AmigaOS4 .so support archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' archive_expsym_cmds='' ;; m68k) archive_cmds='$RM $output_objdir/a2ixlibrary.data~$ECHO "#define NAME $libname" > $output_objdir/a2ixlibrary.data~$ECHO "#define LIBRARY_ID 1" >> $output_objdir/a2ixlibrary.data~$ECHO "#define VERSION $major" >> $output_objdir/a2ixlibrary.data~$ECHO "#define REVISION $revision" >> $output_objdir/a2ixlibrary.data~$AR $AR_FLAGS $lib $libobjs~$RANLIB $lib~(cd $output_objdir && a2ixlibrary -32)' hardcode_libdir_flag_spec='-L$libdir' hardcode_minus_L=yes ;; esac ;; bsdi[45]*) export_dynamic_flag_spec=-rdynamic ;; cygwin* | mingw* | pw32* | cegcc*) # When not using gcc, we currently assume that we are using # Microsoft Visual C++. # hardcode_libdir_flag_spec is actually meaningless, as there is # no search path for DLLs. case $cc_basename in cl*) # Native MSVC hardcode_libdir_flag_spec=' ' allow_undefined_flag=unsupported always_export_symbols=yes file_list_spec='@' # Tell ltmain to make .lib files, not .a files. libext=lib # Tell ltmain to make .dll files, not .so files. shrext_cmds=".dll" # FIXME: Setting linknames here is a bad hack. archive_cmds='$CC -o $output_objdir/$soname $libobjs $compiler_flags $deplibs -Wl,-dll~linknames=' archive_expsym_cmds='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then sed -n -e 's/\\\\\\\(.*\\\\\\\)/-link\\\ -EXPORT:\\\\\\\1/' -e '1\\\!p' < $export_symbols > $output_objdir/$soname.exp; else sed -e 's/\\\\\\\(.*\\\\\\\)/-link\\\ -EXPORT:\\\\\\\1/' < $export_symbols > $output_objdir/$soname.exp; fi~ $CC -o $tool_output_objdir$soname $libobjs $compiler_flags $deplibs "@$tool_output_objdir$soname.exp" -Wl,-DLL,-IMPLIB:"$tool_output_objdir$libname.dll.lib"~ linknames=' # The linker will not automatically build a static lib if we build a DLL. # _LT_TAGVAR(old_archive_from_new_cmds, )='true' enable_shared_with_static_runtimes=yes exclude_expsyms='_NULL_IMPORT_DESCRIPTOR|_IMPORT_DESCRIPTOR_.*' export_symbols_cmds='$NM $libobjs $convenience | $global_symbol_pipe | $SED -e '\''/^[BCDGRS][ ]/s/.*[ ]\([^ ]*\)/\1,DATA/'\'' | $SED -e '\''/^[AITW][ ]/s/.*[ ]//'\'' | sort | uniq > $export_symbols' # Don't use ranlib old_postinstall_cmds='chmod 644 $oldlib' postlink_cmds='lt_outputfile="@OUTPUT@"~ lt_tool_outputfile="@TOOL_OUTPUT@"~ case $lt_outputfile in *.exe|*.EXE) ;; *) lt_outputfile="$lt_outputfile.exe" lt_tool_outputfile="$lt_tool_outputfile.exe" ;; esac~ if test "$MANIFEST_TOOL" != ":" && test -f "$lt_outputfile.manifest"; then $MANIFEST_TOOL -manifest "$lt_tool_outputfile.manifest" -outputresource:"$lt_tool_outputfile" || exit 1; $RM "$lt_outputfile.manifest"; fi' ;; *) # Assume MSVC wrapper hardcode_libdir_flag_spec=' ' allow_undefined_flag=unsupported # Tell ltmain to make .lib files, not .a files. libext=lib # Tell ltmain to make .dll files, not .so files. shrext_cmds=".dll" # FIXME: Setting linknames here is a bad hack. archive_cmds='$CC -o $lib $libobjs $compiler_flags `func_echo_all "$deplibs" | $SED '\''s/ -lc$//'\''` -link -dll~linknames=' # The linker will automatically build a .lib file if we build a DLL. old_archive_from_new_cmds='true' # FIXME: Should let the user specify the lib program. old_archive_cmds='lib -OUT:$oldlib$oldobjs$old_deplibs' enable_shared_with_static_runtimes=yes ;; esac ;; darwin* | rhapsody*) archive_cmds_need_lc=no hardcode_direct=no hardcode_automatic=yes hardcode_shlibpath_var=unsupported if test "$lt_cv_ld_force_load" = "yes"; then whole_archive_flag_spec='`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience ${wl}-force_load,$conv\"; done; func_echo_all \"$new_convenience\"`' else whole_archive_flag_spec='' fi link_all_deplibs=yes allow_undefined_flag="$_lt_dar_allow_undefined" case $cc_basename in ifort*) _lt_dar_can_shared=yes ;; *) _lt_dar_can_shared=$GCC ;; esac if test "$_lt_dar_can_shared" = "yes"; then output_verbose_link_cmd=func_echo_all archive_cmds="\$CC -dynamiclib \$allow_undefined_flag -o \$lib \$libobjs \$deplibs \$compiler_flags -install_name \$rpath/\$soname \$verstring $_lt_dar_single_mod${_lt_dsymutil}" module_cmds="\$CC \$allow_undefined_flag -o \$lib -bundle \$libobjs \$deplibs \$compiler_flags${_lt_dsymutil}" archive_expsym_cmds="sed 's,^,_,' < \$export_symbols > \$output_objdir/\${libname}-symbols.expsym~\$CC -dynamiclib \$allow_undefined_flag -o \$lib \$libobjs \$deplibs \$compiler_flags -install_name \$rpath/\$soname \$verstring ${_lt_dar_single_mod}${_lt_dar_export_syms}${_lt_dsymutil}" module_expsym_cmds="sed -e 's,^,_,' < \$export_symbols > \$output_objdir/\${libname}-symbols.expsym~\$CC \$allow_undefined_flag -o \$lib -bundle \$libobjs \$deplibs \$compiler_flags${_lt_dar_export_syms}${_lt_dsymutil}" else ld_shlibs=no fi ;; dgux*) archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' hardcode_libdir_flag_spec='-L$libdir' hardcode_shlibpath_var=no ;; # FreeBSD 2.2.[012] allows us to include c++rt0.o to get C++ constructor # support. Future versions do this automatically, but an explicit c++rt0.o # does not break anything, and helps significantly (at the cost of a little # extra space). freebsd2.2*) archive_cmds='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags /usr/lib/c++rt0.o' hardcode_libdir_flag_spec='-R$libdir' hardcode_direct=yes hardcode_shlibpath_var=no ;; # Unfortunately, older versions of FreeBSD 2 do not have this feature. freebsd2.*) archive_cmds='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' hardcode_direct=yes hardcode_minus_L=yes hardcode_shlibpath_var=no ;; # FreeBSD 3 and greater uses gcc -shared to do shared libraries. freebsd* | dragonfly*) archive_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags' hardcode_libdir_flag_spec='-R$libdir' hardcode_direct=yes hardcode_shlibpath_var=no ;; hpux9*) if test "$GCC" = yes; then archive_cmds='$RM $output_objdir/$soname~$CC -shared $pic_flag ${wl}+b ${wl}$install_libdir -o $output_objdir/$soname $libobjs $deplibs $compiler_flags~test $output_objdir/$soname = $lib || mv $output_objdir/$soname $lib' else archive_cmds='$RM $output_objdir/$soname~$LD -b +b $install_libdir -o $output_objdir/$soname $libobjs $deplibs $linker_flags~test $output_objdir/$soname = $lib || mv $output_objdir/$soname $lib' fi hardcode_libdir_flag_spec='${wl}+b ${wl}$libdir' hardcode_libdir_separator=: hardcode_direct=yes # hardcode_minus_L: Not really in the search PATH, # but as the default location of the library. hardcode_minus_L=yes export_dynamic_flag_spec='${wl}-E' ;; hpux10*) if test "$GCC" = yes && test "$with_gnu_ld" = no; then archive_cmds='$CC -shared $pic_flag ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags' else archive_cmds='$LD -b +h $soname +b $install_libdir -o $lib $libobjs $deplibs $linker_flags' fi if test "$with_gnu_ld" = no; then hardcode_libdir_flag_spec='${wl}+b ${wl}$libdir' hardcode_libdir_separator=: hardcode_direct=yes hardcode_direct_absolute=yes export_dynamic_flag_spec='${wl}-E' # hardcode_minus_L: Not really in the search PATH, # but as the default location of the library. hardcode_minus_L=yes fi ;; hpux11*) if test "$GCC" = yes && test "$with_gnu_ld" = no; then case $host_cpu in hppa*64*) archive_cmds='$CC -shared ${wl}+h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags' ;; ia64*) archive_cmds='$CC -shared $pic_flag ${wl}+h ${wl}$soname ${wl}+nodefaultrpath -o $lib $libobjs $deplibs $compiler_flags' ;; *) archive_cmds='$CC -shared $pic_flag ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags' ;; esac else case $host_cpu in hppa*64*) archive_cmds='$CC -b ${wl}+h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags' ;; ia64*) archive_cmds='$CC -b ${wl}+h ${wl}$soname ${wl}+nodefaultrpath -o $lib $libobjs $deplibs $compiler_flags' ;; *) # Older versions of the 11.00 compiler do not understand -b yet # (HP92453-01 A.11.01.20 doesn't, HP92453-01 B.11.X.35175-35176.GP does) { $as_echo "$as_me:${as_lineno-$LINENO}: checking if $CC understands -b" >&5 $as_echo_n "checking if $CC understands -b... " >&6; } if ${lt_cv_prog_compiler__b+:} false; then : $as_echo_n "(cached) " >&6 else lt_cv_prog_compiler__b=no save_LDFLAGS="$LDFLAGS" LDFLAGS="$LDFLAGS -b" echo "$lt_simple_link_test_code" > conftest.$ac_ext if (eval $ac_link 2>conftest.err) && test -s conftest$ac_exeext; then # The linker can only warn and ignore the option if not recognized # So say no if there are warnings if test -s conftest.err; then # Append any errors to the config.log. cat conftest.err 1>&5 $ECHO "$_lt_linker_boilerplate" | $SED '/^$/d' > conftest.exp $SED '/^$/d; /^ *+/d' conftest.err >conftest.er2 if diff conftest.exp conftest.er2 >/dev/null; then lt_cv_prog_compiler__b=yes fi else lt_cv_prog_compiler__b=yes fi fi $RM -r conftest* LDFLAGS="$save_LDFLAGS" fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_prog_compiler__b" >&5 $as_echo "$lt_cv_prog_compiler__b" >&6; } if test x"$lt_cv_prog_compiler__b" = xyes; then archive_cmds='$CC -b ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags' else archive_cmds='$LD -b +h $soname +b $install_libdir -o $lib $libobjs $deplibs $linker_flags' fi ;; esac fi if test "$with_gnu_ld" = no; then hardcode_libdir_flag_spec='${wl}+b ${wl}$libdir' hardcode_libdir_separator=: case $host_cpu in hppa*64*|ia64*) hardcode_direct=no hardcode_shlibpath_var=no ;; *) hardcode_direct=yes hardcode_direct_absolute=yes export_dynamic_flag_spec='${wl}-E' # hardcode_minus_L: Not really in the search PATH, # but as the default location of the library. hardcode_minus_L=yes ;; esac fi ;; irix5* | irix6* | nonstopux*) if test "$GCC" = yes; then archive_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib' # Try to use the -exported_symbol ld option, if it does not # work, assume that -exports_file does not work either and # implicitly export all symbols. # This should be the same for all languages, so no per-tag cache variable. { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether the $host_os linker accepts -exported_symbol" >&5 $as_echo_n "checking whether the $host_os linker accepts -exported_symbol... " >&6; } if ${lt_cv_irix_exported_symbol+:} false; then : $as_echo_n "(cached) " >&6 else save_LDFLAGS="$LDFLAGS" LDFLAGS="$LDFLAGS -shared ${wl}-exported_symbol ${wl}foo ${wl}-update_registry ${wl}/dev/null" cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ int foo (void) { return 0; } _ACEOF if ac_fn_c_try_link "$LINENO"; then : lt_cv_irix_exported_symbol=yes else lt_cv_irix_exported_symbol=no fi rm -f core conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext LDFLAGS="$save_LDFLAGS" fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_irix_exported_symbol" >&5 $as_echo "$lt_cv_irix_exported_symbol" >&6; } if test "$lt_cv_irix_exported_symbol" = yes; then archive_expsym_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations ${wl}-exports_file ${wl}$export_symbols -o $lib' fi else archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && func_echo_all "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib' archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && func_echo_all "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -exports_file $export_symbols -o $lib' fi archive_cmds_need_lc='no' hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' hardcode_libdir_separator=: inherit_rpath=yes link_all_deplibs=yes ;; netbsd* | netbsdelf*-gnu) if echo __ELF__ | $CC -E - | $GREP __ELF__ >/dev/null; then archive_cmds='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' # a.out else archive_cmds='$LD -shared -o $lib $libobjs $deplibs $linker_flags' # ELF fi hardcode_libdir_flag_spec='-R$libdir' hardcode_direct=yes hardcode_shlibpath_var=no ;; newsos6) archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' hardcode_direct=yes hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' hardcode_libdir_separator=: hardcode_shlibpath_var=no ;; *nto* | *qnx*) ;; openbsd*) if test -f /usr/libexec/ld.so; then hardcode_direct=yes hardcode_shlibpath_var=no hardcode_direct_absolute=yes if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then archive_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags' archive_expsym_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags ${wl}-retain-symbols-file,$export_symbols' hardcode_libdir_flag_spec='${wl}-rpath,$libdir' export_dynamic_flag_spec='${wl}-E' else case $host_os in openbsd[01].* | openbsd2.[0-7] | openbsd2.[0-7].*) archive_cmds='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' hardcode_libdir_flag_spec='-R$libdir' ;; *) archive_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags' hardcode_libdir_flag_spec='${wl}-rpath,$libdir' ;; esac fi else ld_shlibs=no fi ;; os2*) hardcode_libdir_flag_spec='-L$libdir' hardcode_minus_L=yes allow_undefined_flag=unsupported archive_cmds='$ECHO "LIBRARY $libname INITINSTANCE" > $output_objdir/$libname.def~$ECHO "DESCRIPTION \"$libname\"" >> $output_objdir/$libname.def~echo DATA >> $output_objdir/$libname.def~echo " SINGLE NONSHARED" >> $output_objdir/$libname.def~echo EXPORTS >> $output_objdir/$libname.def~emxexp $libobjs >> $output_objdir/$libname.def~$CC -Zdll -Zcrtdll -o $lib $libobjs $deplibs $compiler_flags $output_objdir/$libname.def' old_archive_from_new_cmds='emximp -o $output_objdir/$libname.a $output_objdir/$libname.def' ;; osf3*) if test "$GCC" = yes; then allow_undefined_flag=' ${wl}-expect_unresolved ${wl}\*' archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib' else allow_undefined_flag=' -expect_unresolved \*' archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && func_echo_all "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib' fi archive_cmds_need_lc='no' hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' hardcode_libdir_separator=: ;; osf4* | osf5*) # as osf3* with the addition of -msym flag if test "$GCC" = yes; then allow_undefined_flag=' ${wl}-expect_unresolved ${wl}\*' archive_cmds='$CC -shared${allow_undefined_flag} $pic_flag $libobjs $deplibs $compiler_flags ${wl}-msym ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib' hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' else allow_undefined_flag=' -expect_unresolved \*' archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags -msym -soname $soname `test -n "$verstring" && func_echo_all "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib' archive_expsym_cmds='for i in `cat $export_symbols`; do printf "%s %s\\n" -exported_symbol "\$i" >> $lib.exp; done; printf "%s\\n" "-hidden">> $lib.exp~ $CC -shared${allow_undefined_flag} ${wl}-input ${wl}$lib.exp $compiler_flags $libobjs $deplibs -soname $soname `test -n "$verstring" && $ECHO "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib~$RM $lib.exp' # Both c and cxx compiler support -rpath directly hardcode_libdir_flag_spec='-rpath $libdir' fi archive_cmds_need_lc='no' hardcode_libdir_separator=: ;; solaris*) no_undefined_flag=' -z defs' if test "$GCC" = yes; then wlarc='${wl}' archive_cmds='$CC -shared $pic_flag ${wl}-z ${wl}text ${wl}-h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags' archive_expsym_cmds='echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~echo "local: *; };" >> $lib.exp~ $CC -shared $pic_flag ${wl}-z ${wl}text ${wl}-M ${wl}$lib.exp ${wl}-h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags~$RM $lib.exp' else case `$CC -V 2>&1` in *"Compilers 5.0"*) wlarc='' archive_cmds='$LD -G${allow_undefined_flag} -h $soname -o $lib $libobjs $deplibs $linker_flags' archive_expsym_cmds='echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~echo "local: *; };" >> $lib.exp~ $LD -G${allow_undefined_flag} -M $lib.exp -h $soname -o $lib $libobjs $deplibs $linker_flags~$RM $lib.exp' ;; *) wlarc='${wl}' archive_cmds='$CC -G${allow_undefined_flag} -h $soname -o $lib $libobjs $deplibs $compiler_flags' archive_expsym_cmds='echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~echo "local: *; };" >> $lib.exp~ $CC -G${allow_undefined_flag} -M $lib.exp -h $soname -o $lib $libobjs $deplibs $compiler_flags~$RM $lib.exp' ;; esac fi hardcode_libdir_flag_spec='-R$libdir' hardcode_shlibpath_var=no case $host_os in solaris2.[0-5] | solaris2.[0-5].*) ;; *) # The compiler driver will combine and reorder linker options, # but understands `-z linker_flag'. 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then sys_lib_search_path_spec="/usr/lib/hpux32 /usr/local/lib/hpux32 /usr/local/lib" else sys_lib_search_path_spec="/usr/lib/hpux64 /usr/local/lib/hpux64" fi sys_lib_dlsearch_path_spec=$sys_lib_search_path_spec ;; hppa*64*) shrext_cmds='.sl' hardcode_into_libs=yes dynamic_linker="$host_os dld.sl" shlibpath_var=LD_LIBRARY_PATH # How should we handle SHLIB_PATH shlibpath_overrides_runpath=yes # Unless +noenvvar is specified. library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' sys_lib_search_path_spec="/usr/lib/pa20_64 /usr/ccs/lib/pa20_64" sys_lib_dlsearch_path_spec=$sys_lib_search_path_spec ;; *) shrext_cmds='.sl' dynamic_linker="$host_os dld.sl" shlibpath_var=SHLIB_PATH shlibpath_overrides_runpath=no # +s is required to enable SHLIB_PATH library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' ;; esac # HP-UX runs *really* slowly unless shared libraries are mode 555, ... postinstall_cmds='chmod 555 $lib' # or fails outright, so override atomically: install_override_mode=555 ;; interix[3-9]*) version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' dynamic_linker='Interix 3.x ld.so.1 (PE, like ELF)' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=no hardcode_into_libs=yes ;; irix5* | irix6* | nonstopux*) case $host_os in nonstopux*) version_type=nonstopux ;; *) if test "$lt_cv_prog_gnu_ld" = yes; then version_type=linux # correct to gnu/linux during the next big refactor else version_type=irix fi ;; esac need_lib_prefix=no need_version=no soname_spec='${libname}${release}${shared_ext}$major' library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${release}${shared_ext} $libname${shared_ext}' case $host_os in irix5* | nonstopux*) libsuff= shlibsuff= ;; *) case $LD in # libtool.m4 will add one of these switches to LD *-32|*"-32 "|*-melf32bsmip|*"-melf32bsmip ") libsuff= shlibsuff= libmagic=32-bit;; *-n32|*"-n32 "|*-melf32bmipn32|*"-melf32bmipn32 ") libsuff=32 shlibsuff=N32 libmagic=N32;; *-64|*"-64 "|*-melf64bmip|*"-melf64bmip ") libsuff=64 shlibsuff=64 libmagic=64-bit;; *) libsuff= shlibsuff= libmagic=never-match;; esac ;; esac shlibpath_var=LD_LIBRARY${shlibsuff}_PATH shlibpath_overrides_runpath=no sys_lib_search_path_spec="/usr/lib${libsuff} /lib${libsuff} /usr/local/lib${libsuff}" sys_lib_dlsearch_path_spec="/usr/lib${libsuff} /lib${libsuff}" hardcode_into_libs=yes ;; # No shared lib support for Linux oldld, aout, or coff. linux*oldld* | linux*aout* | linux*coff*) dynamic_linker=no ;; # This must be glibc/ELF. linux* | k*bsd*-gnu | kopensolaris*-gnu | gnu*) version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' finish_cmds='PATH="\$PATH:/sbin" ldconfig -n $libdir' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=no # Some binutils ld are patched to set DT_RUNPATH if ${lt_cv_shlibpath_overrides_runpath+:} false; then : $as_echo_n "(cached) " >&6 else lt_cv_shlibpath_overrides_runpath=no save_LDFLAGS=$LDFLAGS save_libdir=$libdir eval "libdir=/foo; wl=\"$lt_prog_compiler_wl\"; \ LDFLAGS=\"\$LDFLAGS $hardcode_libdir_flag_spec\"" cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ int main () { ; return 0; } _ACEOF if ac_fn_c_try_link "$LINENO"; then : if ($OBJDUMP -p conftest$ac_exeext) 2>/dev/null | grep "RUNPATH.*$libdir" >/dev/null; then : lt_cv_shlibpath_overrides_runpath=yes fi fi rm -f core conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext LDFLAGS=$save_LDFLAGS libdir=$save_libdir fi shlibpath_overrides_runpath=$lt_cv_shlibpath_overrides_runpath # This implies no fast_install, which is unacceptable. # Some rework will be needed to allow for fast_install # before this can be enabled. hardcode_into_libs=yes # Append ld.so.conf contents to the search path if test -f /etc/ld.so.conf; then lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;/^[ ]*hwcap[ ]/d;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;s/"//g;/^$/d' | tr '\n' ' '` sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra" fi # We used to test for /lib/ld.so.1 and disable shared libraries on # powerpc, because MkLinux only supported shared libraries with the # GNU dynamic linker. Since this was broken with cross compilers, # most powerpc-linux boxes support dynamic linking these days and # people can always --disable-shared, the test was removed, and we # assume the GNU/Linux dynamic linker is in use. dynamic_linker='GNU/Linux ld.so' ;; netbsdelf*-gnu) version_type=linux need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=no hardcode_into_libs=yes dynamic_linker='NetBSD ld.elf_so' ;; netbsd*) version_type=sunos need_lib_prefix=no need_version=no if echo __ELF__ | $CC -E - | $GREP __ELF__ >/dev/null; then library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${shared_ext}$versuffix' finish_cmds='PATH="\$PATH:/sbin" ldconfig -m $libdir' dynamic_linker='NetBSD (a.out) ld.so' else library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' dynamic_linker='NetBSD ld.elf_so' fi shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=yes hardcode_into_libs=yes ;; newsos6) version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=yes ;; *nto* | *qnx*) version_type=qnx need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=no hardcode_into_libs=yes dynamic_linker='ldqnx.so' ;; openbsd*) version_type=sunos sys_lib_dlsearch_path_spec="/usr/lib" need_lib_prefix=no # Some older versions of OpenBSD (3.3 at least) *do* need versioned libs. case $host_os in openbsd3.3 | openbsd3.3.*) need_version=yes ;; *) need_version=no ;; esac library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${shared_ext}$versuffix' finish_cmds='PATH="\$PATH:/sbin" ldconfig -m $libdir' shlibpath_var=LD_LIBRARY_PATH if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then case $host_os in openbsd2.[89] | openbsd2.[89].*) shlibpath_overrides_runpath=no ;; *) shlibpath_overrides_runpath=yes ;; esac else shlibpath_overrides_runpath=yes fi ;; os2*) libname_spec='$name' shrext_cmds=".dll" need_lib_prefix=no library_names_spec='$libname${shared_ext} $libname.a' dynamic_linker='OS/2 ld.exe' shlibpath_var=LIBPATH ;; osf3* | osf4* | osf5*) version_type=osf need_lib_prefix=no need_version=no soname_spec='${libname}${release}${shared_ext}$major' library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' shlibpath_var=LD_LIBRARY_PATH sys_lib_search_path_spec="/usr/shlib /usr/ccs/lib /usr/lib/cmplrs/cc /usr/lib /usr/local/lib /var/shlib" sys_lib_dlsearch_path_spec="$sys_lib_search_path_spec" ;; rdos*) dynamic_linker=no ;; solaris*) version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=yes hardcode_into_libs=yes # ldd complains unless libraries are executable postinstall_cmds='chmod +x $lib' ;; sunos4*) version_type=sunos library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${shared_ext}$versuffix' finish_cmds='PATH="\$PATH:/usr/etc" ldconfig $libdir' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=yes if test "$with_gnu_ld" = yes; then need_lib_prefix=no fi need_version=yes ;; sysv4 | sysv4.3*) version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH case $host_vendor in sni) shlibpath_overrides_runpath=no need_lib_prefix=no runpath_var=LD_RUN_PATH ;; siemens) need_lib_prefix=no ;; motorola) need_lib_prefix=no need_version=no shlibpath_overrides_runpath=no sys_lib_search_path_spec='/lib /usr/lib /usr/ccs/lib' ;; esac ;; sysv4*MP*) if test -d /usr/nec ;then version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='$libname${shared_ext}.$versuffix $libname${shared_ext}.$major $libname${shared_ext}' soname_spec='$libname${shared_ext}.$major' shlibpath_var=LD_LIBRARY_PATH fi ;; sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX* | sysv4*uw2*) version_type=freebsd-elf need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext} $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=yes hardcode_into_libs=yes if test "$with_gnu_ld" = yes; then sys_lib_search_path_spec='/usr/local/lib /usr/gnu/lib /usr/ccs/lib /usr/lib /lib' else sys_lib_search_path_spec='/usr/ccs/lib /usr/lib' case $host_os in sco3.2v5*) sys_lib_search_path_spec="$sys_lib_search_path_spec /lib" ;; esac fi sys_lib_dlsearch_path_spec='/usr/lib' ;; tpf*) # TPF is a cross-target only. Preferred cross-host = GNU/Linux. version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=no hardcode_into_libs=yes ;; uts4*) version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH ;; *) dynamic_linker=no ;; esac { $as_echo "$as_me:${as_lineno-$LINENO}: result: $dynamic_linker" >&5 $as_echo "$dynamic_linker" >&6; } test "$dynamic_linker" = no && can_build_shared=no variables_saved_for_relink="PATH $shlibpath_var $runpath_var" if test "$GCC" = yes; then variables_saved_for_relink="$variables_saved_for_relink GCC_EXEC_PREFIX COMPILER_PATH LIBRARY_PATH" fi if test "${lt_cv_sys_lib_search_path_spec+set}" = set; then sys_lib_search_path_spec="$lt_cv_sys_lib_search_path_spec" fi if test "${lt_cv_sys_lib_dlsearch_path_spec+set}" = set; then sys_lib_dlsearch_path_spec="$lt_cv_sys_lib_dlsearch_path_spec" fi { $as_echo "$as_me:${as_lineno-$LINENO}: checking how to hardcode library paths into programs" >&5 $as_echo_n "checking how to hardcode library paths into programs... " >&6; } hardcode_action= if test -n "$hardcode_libdir_flag_spec" || test -n "$runpath_var" || test "X$hardcode_automatic" = "Xyes" ; then # We can hardcode non-existent directories. if test "$hardcode_direct" != no && # If the only mechanism to avoid hardcoding is shlibpath_var, we # have to relink, otherwise we might link with an installed library # when we should be linking with a yet-to-be-installed one ## test "$_LT_TAGVAR(hardcode_shlibpath_var, )" != no && test "$hardcode_minus_L" != no; then # Linking always hardcodes the temporary library directory. hardcode_action=relink else # We can link without hardcoding, and we can hardcode nonexisting dirs. hardcode_action=immediate fi else # We cannot hardcode anything, or else we can only hardcode existing # directories. hardcode_action=unsupported fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $hardcode_action" >&5 $as_echo "$hardcode_action" >&6; } if test "$hardcode_action" = relink || test "$inherit_rpath" = yes; then # Fast installation is not supported enable_fast_install=no elif test "$shlibpath_overrides_runpath" = yes || test "$enable_shared" = no; then # Fast installation is not necessary enable_fast_install=needless fi if test "x$enable_dlopen" != xyes; then enable_dlopen=unknown enable_dlopen_self=unknown enable_dlopen_self_static=unknown else lt_cv_dlopen=no lt_cv_dlopen_libs= case $host_os in beos*) lt_cv_dlopen="load_add_on" lt_cv_dlopen_libs= lt_cv_dlopen_self=yes ;; mingw* | pw32* | cegcc*) lt_cv_dlopen="LoadLibrary" lt_cv_dlopen_libs= ;; cygwin*) lt_cv_dlopen="dlopen" lt_cv_dlopen_libs= ;; darwin*) # if libdl is installed we need to link against it { $as_echo "$as_me:${as_lineno-$LINENO}: checking for dlopen in -ldl" >&5 $as_echo_n "checking for dlopen in -ldl... " >&6; } if ${ac_cv_lib_dl_dlopen+:} false; then : $as_echo_n "(cached) " >&6 else ac_check_lib_save_LIBS=$LIBS LIBS="-ldl $LIBS" cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ /* Override any GCC internal prototype to avoid an error. Use char because int might match the return type of a GCC builtin and then its argument prototype would still apply. */ #ifdef __cplusplus extern "C" #endif char dlopen (); int main () { return dlopen (); ; return 0; } _ACEOF if ac_fn_c_try_link "$LINENO"; then : ac_cv_lib_dl_dlopen=yes else ac_cv_lib_dl_dlopen=no fi rm -f core conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext LIBS=$ac_check_lib_save_LIBS fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_dl_dlopen" >&5 $as_echo "$ac_cv_lib_dl_dlopen" >&6; } if test "x$ac_cv_lib_dl_dlopen" = xyes; then : lt_cv_dlopen="dlopen" lt_cv_dlopen_libs="-ldl" else lt_cv_dlopen="dyld" lt_cv_dlopen_libs= lt_cv_dlopen_self=yes fi ;; *) ac_fn_c_check_func "$LINENO" "shl_load" "ac_cv_func_shl_load" if test "x$ac_cv_func_shl_load" = xyes; then : lt_cv_dlopen="shl_load" else { $as_echo "$as_me:${as_lineno-$LINENO}: checking for shl_load in -ldld" >&5 $as_echo_n "checking for shl_load in -ldld... " >&6; } if ${ac_cv_lib_dld_shl_load+:} false; then : $as_echo_n "(cached) " >&6 else ac_check_lib_save_LIBS=$LIBS LIBS="-ldld $LIBS" cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ /* Override any GCC internal prototype to avoid an error. Use char because int might match the return type of a GCC builtin and then its argument prototype would still apply. */ #ifdef __cplusplus extern "C" #endif char shl_load (); int main () { return shl_load (); ; return 0; } _ACEOF if ac_fn_c_try_link "$LINENO"; then : ac_cv_lib_dld_shl_load=yes else ac_cv_lib_dld_shl_load=no fi rm -f core conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext LIBS=$ac_check_lib_save_LIBS fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_dld_shl_load" >&5 $as_echo "$ac_cv_lib_dld_shl_load" >&6; } if test "x$ac_cv_lib_dld_shl_load" = xyes; then : lt_cv_dlopen="shl_load" lt_cv_dlopen_libs="-ldld" else ac_fn_c_check_func "$LINENO" "dlopen" "ac_cv_func_dlopen" if test "x$ac_cv_func_dlopen" = xyes; then : lt_cv_dlopen="dlopen" else { $as_echo "$as_me:${as_lineno-$LINENO}: checking for dlopen in -ldl" >&5 $as_echo_n "checking for dlopen in -ldl... " >&6; } if ${ac_cv_lib_dl_dlopen+:} false; then : $as_echo_n "(cached) " >&6 else ac_check_lib_save_LIBS=$LIBS LIBS="-ldl $LIBS" cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ /* Override any GCC internal prototype to avoid an error. Use char because int might match the return type of a GCC builtin and then its argument prototype would still apply. */ #ifdef __cplusplus extern "C" #endif char dlopen (); int main () { return dlopen (); ; return 0; } _ACEOF if ac_fn_c_try_link "$LINENO"; then : ac_cv_lib_dl_dlopen=yes else ac_cv_lib_dl_dlopen=no fi rm -f core conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext LIBS=$ac_check_lib_save_LIBS fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_dl_dlopen" >&5 $as_echo "$ac_cv_lib_dl_dlopen" >&6; } if test "x$ac_cv_lib_dl_dlopen" = xyes; then : lt_cv_dlopen="dlopen" lt_cv_dlopen_libs="-ldl" else { $as_echo "$as_me:${as_lineno-$LINENO}: checking for dlopen in -lsvld" >&5 $as_echo_n "checking for dlopen in -lsvld... " >&6; } if ${ac_cv_lib_svld_dlopen+:} false; then : $as_echo_n "(cached) " >&6 else ac_check_lib_save_LIBS=$LIBS LIBS="-lsvld $LIBS" cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ /* Override any GCC internal prototype to avoid an error. Use char because int might match the return type of a GCC builtin and then its argument prototype would still apply. */ #ifdef __cplusplus extern "C" #endif char dlopen (); int main () { return dlopen (); ; return 0; } _ACEOF if ac_fn_c_try_link "$LINENO"; then : ac_cv_lib_svld_dlopen=yes else ac_cv_lib_svld_dlopen=no fi rm -f core conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext LIBS=$ac_check_lib_save_LIBS fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_svld_dlopen" >&5 $as_echo "$ac_cv_lib_svld_dlopen" >&6; } if test "x$ac_cv_lib_svld_dlopen" = xyes; then : lt_cv_dlopen="dlopen" lt_cv_dlopen_libs="-lsvld" else { $as_echo "$as_me:${as_lineno-$LINENO}: checking for dld_link in -ldld" >&5 $as_echo_n "checking for dld_link in -ldld... " >&6; } if ${ac_cv_lib_dld_dld_link+:} false; then : $as_echo_n "(cached) " >&6 else ac_check_lib_save_LIBS=$LIBS LIBS="-ldld $LIBS" cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ /* Override any GCC internal prototype to avoid an error. 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See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libc_utils; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libc_utils is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file sse_utils.h * SSE/SSE2/SSE3-related functionality * * Copyright (C) 2010,2011 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_SSE_UTILS_H #define PLANCK_SSE_UTILS_H #if (defined(__SSE__)) #include #ifdef __cplusplus extern "C" { #endif typedef __m128 v4sf; /* vector of 4 floats (SSE1) */ typedef union { float f[4]; v4sf v; } V4SF; static inline v4sf build_v4sf (float a, float b, float c, float d) { return _mm_set_ps(d,c,b,a); } static inline void read_v4sf (v4sf v, float *a, float *b, float *c, float *d) { V4SF tmp; tmp.v = v; if (a) *a=tmp.f[0]; if (b) *b=tmp.f[1]; if (c) *c=tmp.f[2]; if (d) *d=tmp.f[3]; } #ifdef __cplusplus } #endif #endif #if (defined(__SSE2__)) #include #ifdef __cplusplus extern "C" { #endif typedef __m128d v2df; /* vector of 2 doubles (SSE2) */ typedef union { double d[2]; v2df v; } V2DF; typedef struct { v2df a,b; } v2df2; typedef struct { V2DF a,b; } V2DF2; #define V2DF_SIGNMASK _mm_set1_pd(-0.0) static inline v2df build_v2df (double a, double b) { return _mm_set_pd(b,a); } static inline void read_v2df (v2df v, double *a, double *b) { _mm_store_sd(a,v); _mm_storeh_pd(b,v); } static inline int v2df_any_gt (v2df a, v2df b) { return (_mm_movemask_pd(_mm_cmpgt_pd(_mm_andnot_pd(V2DF_SIGNMASK,a),b))!=0); } static inline int v2df_all_ge (v2df a, v2df b) { return (_mm_movemask_pd(_mm_cmplt_pd(_mm_andnot_pd(V2DF_SIGNMASK,a),b))==0); } static inline V2DF to_V2DF (v2df x) { V2DF X; X.v=x; return X; } static inline V2DF2 to_V2DF2 (v2df2 x) { V2DF2 X; X.a.v=x.a; X.b.v=x.b; return X; } static inline v2df2 to_v2df2 (V2DF2 X) { v2df2 x; x.a=X.a.v; x.b=X.b.v; return x; } static inline v2df2 zero_v2df2(void) { v2df2 x; x.a=x.b=_mm_setzero_pd(); return x; } #ifdef __cplusplus } #endif #endif #if (defined(__SSE3__)) #include #endif #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/c_utils/c_utils.c0000650000175000017530000000471512255154051025662 0ustar zoncaplanck00000000000000/* * This file is part of libc_utils. * * libc_utils is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libc_utils is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libc_utils; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libc_utils is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Convenience functions * * Copyright (C) 2008-2013 Max-Planck-Society * Author: Martin Reinecke */ #include #include "c_utils.h" void util_fail_ (const char *file, int line, const char *func, const char *msg) { fprintf(stderr,"%s, %i (%s):\n%s\n",file,line,func,msg); exit(1); } void util_warn_ (const char *file, int line, const char *func, const char *msg) { fprintf(stderr,"%s, %i (%s):\n%s\n",file,line,func,msg); } /* This function tries to avoid allocations with a total size close to a high power of two (called the "critical stride" here), by adding a few more bytes if necssary. This lowers the probability that two arrays differ by a multiple of the critical stride in their starting address, which in turn lowers the risk of cache line contention. */ static size_t manipsize(size_t sz) { const size_t critical_stride=4096, cacheline=64, overhead=32; if (sz < (critical_stride/2)) return sz; if (((sz+overhead)%critical_stride)>(2*cacheline)) return sz; return sz+2*cacheline; } #ifdef __SSE__ #include void *util_malloc_ (size_t sz) { void *res; if (sz==0) return NULL; res = _mm_malloc(manipsize(sz),16); UTIL_ASSERT(res,"_mm_malloc() failed"); return res; } void util_free_ (void *ptr) { if ((ptr)!=NULL) _mm_free(ptr); } #else void *util_malloc_ (size_t sz) { void *res; if (sz==0) return NULL; res = malloc(manipsize(sz)); UTIL_ASSERT(res,"malloc() failed"); return res; } void util_free_ (void *ptr) { if ((ptr)!=NULL) free(ptr); } #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/c_utils/planck.make0000650000175000017530000000045112255154051026154 0ustar zoncaplanck00000000000000PKG:=c_utils SD:=$(SRCROOT)/$(PKG) OD:=$(BLDROOT)/$(PKG) FULL_INCLUDE+= -I$(SD) HDR_$(PKG):=$(SD)/*.h LIB_$(PKG):=$(LIBDIR)/libc_utils.a OBJ:=c_utils.o walltime_c.o OBJ:=$(OBJ:%=$(OD)/%) $(OBJ): $(HDR_$(PKG)) | $(OD)_mkdir $(LIB_$(PKG)): $(OBJ) all_hdr+=$(HDR_$(PKG)) all_lib+=$(LIB_$(PKG)) healpy-1.8.1/healpixsubmodule/src/cxx/autotools/c_utils/c_utils.h0000650000175000017530000001137412255154051025666 0ustar zoncaplanck00000000000000/* * This file is part of libc_utils. * * libc_utils is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libc_utils is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libc_utils; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libc_utils is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file c_utils.h * Convenience functions * * Copyright (C) 2008-2013 Max-Planck-Society * \author Martin Reinecke * \note This file should only be included from .c files, NOT from .h files. */ #ifndef PLANCK_C_UTILS_H #define PLANCK_C_UTILS_H #include #include #include #ifdef __cplusplus extern "C" { #endif void util_fail_ (const char *file, int line, const char *func, const char *msg); void util_warn_ (const char *file, int line, const char *func, const char *msg); void *util_malloc_ (size_t sz); void util_free_ (void *ptr); #if defined (__GNUC__) #define UTIL_FUNC_NAME__ __func__ #else #define UTIL_FUNC_NAME__ "unknown" #endif /*! \def UTIL_ASSERT(cond,msg) If \a cond is false, print an error message containing function name, source file name and line number of the call, as well as \a msg; then exit the program with an error status. */ #define UTIL_ASSERT(cond,msg) \ if(!(cond)) util_fail_(__FILE__,__LINE__,UTIL_FUNC_NAME__,msg) /*! \def UTIL_WARN(cond,msg) If \a cond is false, print an warning containing function name, source file name and line number of the call, as well as \a msg. */ #define UTIL_WARN(cond,msg) \ if(!(cond)) util_warn_(__FILE__,__LINE__,UTIL_FUNC_NAME__,msg) /*! \def UTIL_FAIL(msg) Print an error message containing function name, source file name and line number of the call, as well as \a msg; then exit the program with an error status. */ #define UTIL_FAIL(msg) \ util_fail_(__FILE__,__LINE__,UTIL_FUNC_NAME__,msg) /*! \def ALLOC(ptr,type,num) Allocate space for \a num objects of type \a type. Make sure that the allocation succeeded, else stop the program with an error. Return the resulting pointer in \a ptr. */ #define ALLOC(ptr,type,num) \ do { (ptr)=(type *)util_malloc_((num)*sizeof(type)); } while (0) /*! \def RALLOC(type,num) Allocate space for \a num objects of type \a type. Make sure that the allocation succeeded, else stop the program with an error. Cast the resulting pointer to \a (type*). */ #define RALLOC(type,num) \ ((type *)util_malloc_((num)*sizeof(type))) /*! \def DEALLOC(ptr) Deallocate \a ptr. It must have been allocated using \a ALLOC or \a RALLOC. */ #define DEALLOC(ptr) \ do { util_free_(ptr); (ptr)=NULL; } while(0) #define RESIZE(ptr,type,num) \ do { util_free_(ptr); ALLOC(ptr,type,num); } while(0) #define GROW(ptr,type,sz_old,sz_new) \ do { \ if ((sz_new)>(sz_old)) \ { RESIZE(ptr,type,2*(sz_new));sz_old=2*(sz_new); } \ } while(0) /*! \def SET_ARRAY(ptr,i1,i2,val) Set the entries \a ptr[i1] ... \a ptr[i2-1] to \a val. */ #define SET_ARRAY(ptr,i1,i2,val) \ do { \ ptrdiff_t cnt_; \ for (cnt_=(i1);cnt_<(i2);++cnt_) (ptr)[cnt_]=(val); \ } while(0) /*! \def COPY_ARRAY(src,dest,i1,i2) Copy the entries \a src[i1] ... \a src[i2-1] to \a dest[i1] ... \a dest[i2-1]. */ #define COPY_ARRAY(src,dest,i1,i2) \ do { \ ptrdiff_t cnt_; \ for (cnt_=(i1);cnt_<(i2);++cnt_) (dest)[cnt_]=(src)[cnt_]; \ } while(0) #define ALLOC2D(ptr,type,num1,num2) \ do { \ size_t cnt_, num1_=(num1), num2_=(num2); \ ALLOC((ptr),type *,num1_); \ ALLOC((ptr)[0],type,num1_*num2_); \ for (cnt_=1; cnt_(b)) ? (a) : (b)) #define IMIN(a,b) \ (((a)<(b)) ? (a) : (b)) #define SWAP(a,b,type) \ do { type tmp_=(a); (a)=(b); (b)=tmp_; } while(0) #define CHECK_STACK_ALIGN(align) \ do { \ double foo; \ UTIL_WARN((((size_t)(&foo))&(align-1))==0, \ "WARNING: stack not sufficiently aligned!"); \ } while(0) #ifdef __cplusplus } #endif #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/c_utils/walltime_c.c0000650000175000017530000000266112255154051026336 0ustar zoncaplanck00000000000000/* * This file is part of libc_utils. * * libc_utils is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libc_utils is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libc_utils; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libc_utils is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /* * Functionality for reading wall clock time * * Copyright (C) 2010, 2011 Max-Planck-Society * Author: Martin Reinecke */ #if defined (_OPENMP) #include #elif defined (USE_MPI) #include "mpi.h" #else #include #include #endif #include "walltime_c.h" double wallTime(void) { #if defined (_OPENMP) return omp_get_wtime(); #elif defined (USE_MPI) return MPI_Wtime(); #else struct timeval t; gettimeofday(&t, NULL); return t.tv_sec + 1e-6*t.tv_usec; #endif } healpy-1.8.1/healpixsubmodule/src/cxx/autotools/c_utils/walltime_c.h0000650000175000017530000000320212255154051026333 0ustar zoncaplanck00000000000000/* * This file is part of libc_utils. * * libc_utils is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * libc_utils is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with libc_utils; if not, write to the Free Software * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */ /* * libc_utils is being developed at the Max-Planck-Institut fuer Astrophysik * and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt * (DLR). */ /*! \file walltime_c.h * Functionality for reading wall clock time * * Copyright (C) 2010 Max-Planck-Society * \author Martin Reinecke */ #ifndef PLANCK_WALLTIME_C_H #define PLANCK_WALLTIME_C_H #ifdef __cplusplus extern "C" { #endif /*! Returns an approximation of the current wall time (in seconds). The first available of the following timers will be used:
    • \a omp_get_wtime(), if OpenMP is available
    • \a MPI_Wtime(), if MPI is available
    • \a gettimeofday() otherwise
    \note Only useful for measuring time differences. \note This function has an execution time between 10 and 100 nanoseconds. */ double wallTime(void); #ifdef __cplusplus } #endif #endif healpy-1.8.1/healpixsubmodule/src/cxx/autotools/ar-lib0000755000175000017500000001330212346122572023344 0ustar zoncazonca00000000000000#! /bin/sh # Wrapper for Microsoft lib.exe me=ar-lib scriptversion=2012-03-01.08; # UTC # Copyright (C) 2010-2013 Free Software Foundation, Inc. # Written by Peter Rosin . # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2, or (at your option) # any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program. If not, see . # As a special exception to the GNU General Public License, if you # distribute this file as part of a program that contains a # configuration script generated by Autoconf, you may include it under # the same distribution terms that you use for the rest of that program. # This file is maintained in Automake, please report # bugs to or send patches to # . # func_error message func_error () { echo "$me: $1" 1>&2 exit 1 } file_conv= # func_file_conv build_file # Convert a $build file to $host form and store it in $file # Currently only supports Windows hosts. func_file_conv () { file=$1 case $file in / | /[!/]*) # absolute file, and not a UNC file if test -z "$file_conv"; then # lazily determine how to convert abs files case `uname -s` in MINGW*) file_conv=mingw ;; CYGWIN*) file_conv=cygwin ;; *) file_conv=wine ;; esac fi case $file_conv in mingw) file=`cmd //C echo "$file " | sed -e 's/"\(.*\) " *$/\1/'` ;; cygwin) file=`cygpath -m "$file" || echo "$file"` ;; wine) file=`winepath -w "$file" || echo "$file"` ;; esac ;; esac } # func_at_file at_file operation archive # Iterate over all members in AT_FILE performing OPERATION on ARCHIVE # for each of them. # When interpreting the content of the @FILE, do NOT use func_file_conv, # since the user would need to supply preconverted file names to # binutils ar, at least for MinGW. func_at_file () { operation=$2 archive=$3 at_file_contents=`cat "$1"` eval set x "$at_file_contents" shift for member do $AR -NOLOGO $operation:"$member" "$archive" || exit $? done } case $1 in '') func_error "no command. Try '$0 --help' for more information." ;; -h | --h*) cat <= 3.2 because of a # bug in earlier versions regarding C++ sources generated with Cython. See: # https://pypi.python.org/pypi/setuptools/3.6#id171 try: import pkg_resources pkg_resources.require("setuptools >= 3.2") except: from ez_setup import use_setuptools use_setuptools() import os from os.path import join import errno import fnmatch import sys import shlex from distutils.sysconfig import get_config_var, get_config_vars from setuptools import setup, Extension from setuptools.command.test import test as TestCommand from distutils.command.build_clib import build_clib from distutils.errors import DistutilsExecError from distutils.dir_util import mkpath from distutils.file_util import copy_file from distutils import log # Apple switched default C++ standard libraries (from gcc's libstdc++ to # clang's libc++), but some pre-packaged Python environments such as Anaconda # are built against the old C++ standard library. Luckily, we don't have to # actually detect which C++ standard library was used to build the Python # interpreter. We just have to propagate MACOSX_DEPLOYMENT_TARGET from the # configuration variables to the environment. # # This workaround fixes . if get_config_var('MACOSX_DEPLOYMENT_TARGET') and not 'MACOSX_DEPLOYMENT_TARGET' in os.environ: os.environ['MACOSX_DEPLOYMENT_TARGET'] = get_config_var('MACOSX_DEPLOYMENT_TARGET') # # FIXME: Copied from Python 2.7's subprocess.check_output, # but with the output= argument to CalledProcessError, which also # dates to Python 2.7, removed. # # When Python 2.6 becomes unsupported, replace this with: # from subprocess import check_output, CalledProcessError, check_call # from subprocess import Popen, PIPE, CalledProcessError, check_call def check_output(*popenargs, **kwargs): r"""Run command with arguments and return its output as a byte string. If the exit code was non-zero it raises a CalledProcessError. The CalledProcessError object will have the return code in the returncode attribute and output in the output attribute. The arguments are the same as for the Popen constructor. Example: >>> check_output(["ls", "-l", "/dev/null"]) 'crw-rw-rw- 1 root root 1, 3 Oct 18 2007 /dev/null\n' The stdout argument is not allowed as it is used internally. To capture standard error in the result, use stderr=STDOUT. >>> check_output(["/bin/sh", "-c", ... "ls -l non_existent_file ; exit 0"], ... stderr=STDOUT) 'ls: non_existent_file: No such file or directory\n' """ if 'stdout' in kwargs: raise ValueError('stdout argument not allowed, it will be overridden.') process = Popen(stdout=PIPE, *popenargs, **kwargs) output, unused_err = process.communicate() retcode = process.poll() if retcode: cmd = kwargs.get("args") if cmd is None: cmd = popenargs[0] raise CalledProcessError(retcode, cmd) return output # # FIXME: end section copied from Python 2.7's subprocess.check_output # # For ReadTheDocs, do not build the extensions, only install .py files on_rtd = os.environ.get('READTHEDOCS', None) == 'True' cython_require = 'Cython >= 0.16' try: pkg_resources.require(cython_require) from Cython.Distutils import build_ext ext = "pyx" extcpp = "pyx" except: # User does not have a sufficiently new version of Cython. if os.path.exists('healpy/src/_query_disc.cpp'): # This source package already contains the Cython-generated sources, # so we can just use them. from distutils.command.build_ext import build_ext ext = "c" extcpp = "cpp" else: # This source does not contain the Cython-generated sources, so fail. raise DistutilsExecError(''' It looks like you are attempting to build from the Healpy development sources, i.e., from GitHub. You need {0} to build Healpy from development sources. Either install Healpy from an official stable release from: https://pypi.python.org/pypi/healpy OR, to build from development sources, first get {0} from: https://pypi.python.org/pypi/Cython'''.format(cython_require)) if on_rtd: numpy_inc = '' else: from numpy import get_include numpy_inc = get_include() # Test if pkg-config is present. If not, fall back to pykg-config. try: check_output(['pkg-config', '--version']) setup_requires = [] except OSError as e: if e.errno != errno.ENOENT: raise ValueError log.warn('pkg-config is not installed, falling back to pykg-config') setup_requires = ['pykg-config >= 1.2.0'] os.environ['PKG_CONFIG'] = sys.executable + ' ' + os.path.abspath('pykg_config.py') class build_external_clib(build_clib): """Subclass of Distutils' standard build_clib subcommand. Adds support for libraries that are installed externally and detected with pkg-config, with an optional fallback to build from a local configure-make-install style distribution.""" def __init__(self, dist): build_clib.__init__(self, dist) self.build_args = {} @property def _environ(self): """Construct an environment dictionary suitable for having pkg-config pick up .pc files in the build_clib directory.""" pkg_config_path = os.path.join(os.path.realpath(self.build_clib), 'lib', 'pkgconfig') try: pkg_config_path += ':' + os.environ['PKG_CONFIG_PATH'] except KeyError: pass return dict(os.environ, PKG_CONFIG_PATH=pkg_config_path) def pkgconfig(self, *packages): PKG_CONFIG = tuple(shlex.split(os.environ.get('PKG_CONFIG', 'pkg-config'))) kw = {} index_key_flag = ( (2, '--cflags-only-I', ('include_dirs',)), (0, '--cflags-only-other', ('extra_compile_args', 'extra_link_args')), (2, '--libs-only-L', ('library_dirs', 'runtime_library_dirs')), (2, '--libs-only-l', ('libraries',)), (0, '--libs-only-other', ('extra_link_args',))) for index, flag, keys in index_key_flag: cmd = PKG_CONFIG + (flag,) + tuple(packages) log.debug('%s', ' '.join(cmd)) args = [token[index:].decode() for token in check_output(cmd, env=self._environ).split()] if args: for key in keys: kw.setdefault(key, []).extend(args) return kw def finalize_options(self): """Run 'autoreconf -i' for any bundled libraries to generate the configure script.""" build_clib.finalize_options(self) for lib_name, build_info in self.libraries: if 'sources' not in build_info: log.info("checking if configure script for library '%s' exists", lib_name) if not os.path.exists(os.path.join(build_info['local_source'], 'configure')): log.info("running 'autoreconf -i' for library '%s'", lib_name) check_call(['autoreconf', '-i'], cwd=build_info['local_source']) def build_library(self, library, pkg_config_name, local_source=None, supports_non_srcdir_builds=True): log.info("checking if library '%s' is installed", library) try: build_args = self.pkgconfig(pkg_config_name) log.info("found '%s' installed, using it", library) except CalledProcessError: # If local_source is not specified, then immediately fail. if local_source is None: raise DistutilsExecError("library '%s' is not installed", library) log.info("building library '%s' from source", library) # Determine which compilers we are to use, and what flags. # This is based on what distutils.sysconfig.customize_compiler() # does, but that function has a problem that it doesn't produce # necessary (e.g. architecture) flags for C++ compilers. cc, cxx, opt, cflags = get_config_vars('CC', 'CXX', 'OPT', 'CFLAGS') cxxflags = cflags if 'CC' in os.environ: cc = os.environ['CC'] if 'CXX' in os.environ: cxx = os.environ['CXX'] if 'CFLAGS' in os.environ: cflags = opt + ' ' + os.environ['CFLAGS'] if 'CXXLAGS' in os.environ: cxxflags = opt + ' ' + os.environ['CXXFLAGS'] # Use a subdirectory of build_temp as the build directory. build_temp = os.path.realpath(os.path.join(self.build_temp, library)) # Destination for headers and libraries is build_clib. build_clib = os.path.realpath(self.build_clib) # Create build directories if they do not yet exist. mkpath(build_temp) mkpath(build_clib) if not supports_non_srcdir_builds: self._stage_files_recursive(local_source, build_temp) # Run configure. cmd = ['/bin/sh', os.path.join(os.path.realpath(local_source), 'configure'), '--prefix=' + build_clib, '--disable-shared', '--with-pic', '--disable-maintainer-mode'] log.info('%s', ' '.join(cmd)) check_call(cmd, cwd=build_temp, env=dict(self._environ, CC=cc, CXX=cxx, CFLAGS=cflags, CXXFLAGS=cxxflags)) # Run make install. cmd = ['make', 'install'] log.info('%s', ' '.join(cmd)) check_call(cmd, cwd=build_temp, env=self._environ) build_args = self.pkgconfig(pkg_config_name) return build_args # Done! @staticmethod def _list_files_recursive(path, skip=('.*', '*.o', 'autom4te.cache')): """Yield paths to all of the files contained within the given path, following symlinks. If skip is a tuple of fnmatch()-style wildcard strings, skip any directory or filename matching any of the patterns in skip.""" for dirpath, dirnames, filenames in os.walk(path, followlinks=True): if not any(any(fnmatch.fnmatch(p, s) for s in skip) for p in dirpath.split(os.sep)): for filename in filenames: if not any(fnmatch.fnmatch(filename, s) for s in skip): yield os.path.join(dirpath, filename) @staticmethod def _stage_files_recursive(src, dest, skip=None): """Hard link or copy all of the files in the path src into the path dest. Subdirectories are created as needed, and files in dest are overwritten.""" # Use hard links if they are supported on this system. if hasattr(os, 'link'): link='hard' elif hasattr(os, 'symlink'): link='sym' else: link=None for dirpath, dirnames, filenames in os.walk(src, followlinks=True): if not any(p.startswith('.') for p in dirpath.split(os.sep)): dest_dirpath = os.path.join(dest, dirpath.split(src, 1)[1].lstrip(os.sep)) mkpath(dest_dirpath) for filename in filenames: if not filename.startswith('.'): src_path = os.path.join(dirpath, filename) dest_path = os.path.join(dest_dirpath, filename) if not os.path.exists(dest_path): copy_file(os.path.join(dirpath, filename), os.path.join(dest_dirpath, filename)) def get_source_files(self): """Copied from Distutils' own build_clib, but modified so that it is not an error for a build_info dictionary to lack a 'sources' key. If there is no 'sources' key, then all files contained within the path given by the 'local_sources' value are returned.""" self.check_library_list(self.libraries) filenames = [] for (lib_name, build_info) in self.libraries: sources = build_info.get('sources') if sources is None or not isinstance(sources, (list, tuple)): sources = list(self._list_files_recursive(build_info['local_source'])) filenames.extend(sources) return filenames def build_libraries(self, libraries): # Build libraries that have no 'sources' key, accumulating the output # from pkg-config. for lib_name, build_info in libraries: if 'sources' not in build_info: for key, value in self.build_library(lib_name, **build_info).items(): if key in self.build_args: self.build_args[key].extend(value) else: self.build_args[key] = value # Use parent method to build libraries that have a 'sources' key. build_clib.build_libraries(self, ((lib_name, build_info) for lib_name, build_info in libraries if 'sources' in build_info)) class custom_build_ext(build_ext): def run(self): # If we were asked to build any C/C++ libraries, add the directory # where we built them to the include path. (It's already on the library # path.) if self.distribution.has_c_libraries(): self.run_command('build_clib') build_clib = self.get_finalized_command('build_clib') for key, value in build_clib.build_args.items(): for ext in self.extensions: if not hasattr(ext, key) or getattr(ext, key) is None: setattr(ext, key, value) else: getattr(ext, key).extend(value) build_ext.run(self) class PyTest(TestCommand): """Custom Setuptools test command to run doctests with py.test. Based on http://pytest.org/latest/goodpractises.html#integration-with-setuptools-test-commands""" def finalize_options(self): TestCommand.finalize_options(self) self.test_args.insert(0, '--doctest-modules') def run_tests(self): import pytest sys.exit(pytest.main(self.test_args)) def get_version(): context = {} try: execfile except NameError: exec(open('healpy/version.py').read(), context) else: execfile('healpy/version.py', context) return context['__version__'] healpy_pixel_lib_src = '_healpy_pixel_lib.cc' healpy_spht_src = '_healpy_sph_transform_lib.cc' healpy_fitsio_src = '_healpy_fitsio_lib.cc' #start with base extension pixel_lib = Extension('healpy._healpy_pixel_lib', sources=[join('healpy','src', healpy_pixel_lib_src)], include_dirs=[numpy_inc], language='c++' ) spht_lib = Extension('healpy._healpy_sph_transform_lib', sources=[join('healpy','src', healpy_spht_src)], include_dirs=[numpy_inc], language='c++' ) hfits_lib = Extension('healpy._healpy_fitsio_lib', sources=[join('healpy','src', healpy_fitsio_src)], include_dirs=[numpy_inc], language='c++' ) if on_rtd: libraries = [] cmdclass = {} extension_list = [] else: cmdclass = { 'build_ext': custom_build_ext, 'build_clib': build_external_clib, 'test': PyTest} libraries = [ ('cfitsio', { 'pkg_config_name': 'cfitsio', 'local_source': 'cfitsio', 'supports_non_srcdir_builds': False}), ('healpix_cxx', { 'pkg_config_name': 'healpix_cxx', 'local_source': 'healpixsubmodule/src/cxx/autotools'}) ] extension_list = [pixel_lib, spht_lib, hfits_lib, Extension("healpy._query_disc", ['healpy/src/_query_disc.'+extcpp], include_dirs=[numpy_inc], language='c++'), Extension("healpy._sphtools", ['healpy/src/_sphtools.'+extcpp], include_dirs=[numpy_inc], language='c++'), Extension("healpy._pixelfunc", ['healpy/src/_pixelfunc.'+extcpp], include_dirs=[numpy_inc], language='c++'), ] for e in extension_list[-3:]: #extra setup for Cython extensions e.pyrex_directives = {"embedsignature": True} setup(name='healpy', version=get_version(), description='Healpix tools package for Python', classifiers=[ 'Development Status :: 5 - Production/Stable', 'Environment :: Console', 'Intended Audience :: Science/Research', 'License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)', 'Operating System :: POSIX', 'Programming Language :: C++', 'Programming Language :: Python :: 2.6', 'Programming Language :: Python :: 2.7', 'Programming Language :: Python :: 3.2', 'Programming Language :: Python :: 3.3', 'Programming Language :: Python :: 3.4', 'Topic :: Scientific/Engineering :: Astronomy', 'Topic :: Scientific/Engineering :: Visualization' ], author='C. Rosset, A. Zonca', author_email='cyrille.rosset@apc.univ-paris-diderot.fr', url='http://github.com/healpy', packages=['healpy','healpy.test'], libraries=libraries, py_modules=['healpy.pixelfunc','healpy.sphtfunc', 'healpy.visufunc','healpy.fitsfunc', 'healpy.projector','healpy.rotator', 'healpy.projaxes','healpy.version'], cmdclass = cmdclass, ext_modules = extension_list, package_data = {'healpy': ['data/*.fits', 'data/totcls.dat', 'test/data/*.fits', 'test/data/*.sh']}, setup_requires=setup_requires, install_requires=['pyfits', 'six'], tests_require=['pytest'], test_suite='healpy', license='GPLv2' ) healpy-1.8.1/README.rst0000644000175000017500000001104512351423510014735 0ustar zoncazonca00000000000000==================================== Healpy, a python wrapper for healpix ==================================== .. image:: https://travis-ci.org/healpy/healpy.png?branch=master :target: https://travis-ci.org/healpy/healpy Description ----------- Healpy provides a python package to manipulate healpix maps. It is based on the standard numeric and visualisation tools for Python, Numpy and matplotlib. To find more information about Healpix, please visit its home page at http://healpix.sourceforge.net/. The documentation can be found at http://healpy.readthedocs.org, tutorial at http://healpy.readthedocs.org/en/latest/tutorial.html. Characteristics --------------- * pixelisation manipulation (ang2pix, pix2ang, *etc.*) * spherical harmonic transforms (map2alm, alm2map, synfast, anafast, *etc.* both for temperature and polarisation) * plotting capabilities (mollweide and gnomonic projection) * reading and writing of Healpix FITS maps and alm Requirements ------------ * `Python `_ 2.6, 2.7, 3.2, 3.3, or 3.4 * `Numpy `_ (tested with version >=1.5.0) * `Matplotlib `_ * Python development package is required for some distribution (e.g., python-dev package for Ubuntu) * `PyFITS `_ Quick installation with Pip --------------------------- The quickest way to install Healpy is with `pip `_ (>= 1.4.2), which automatically fetches the latest version of Healpy and any missing dependencies:: pip install --user healpy If you have installed with ``pip``, you can keep your installation up to date by upgrading from time to time:: pip install --user --upgrade healpy See `INSTALL.rst `_ for further details and other installation options. Optional -------- Healpy depends on the Healpix C++ and cfitsio C libraries. Source code is include with Healpy and you do not have to install them separately. However, if you have them installed already, Healpy should detect and reuse them instead of building them from source. To use your own installations of HEALPix and cfitsio, you will also need: * `pkg-config `_ * `HEALPix `_ autotools-style C++ package * `cfitsio `_ See `INSTALL.rst `_ for further instructions. Known Issues ------------ healpy pixel functions, e.g. ang2pix, do not support 32bit platforms, we are working on fixing this issue. Support ------- For specific *HOWTO* questions please create a question on StackOverflow_ and tag it with the `healpy` tag, so that answers will be easily searchable on google. If you think you found a bug or you have install issues, open an issue on github: https://github.com/healpy/healpy/issues?state=open For more general discussion, you can write to the healpy mailing list: https://groups.google.com/d/forum/healpy .. _StackOverflow: http://stackoverflow.com/questions/ask Contribute ---------- Project development takes place on github, http://github.com/healpy/healpy, please open an issue over there for reporting bugs or suggest improvements. Collaboration is very welcome, just fork the project on github and send pull requests back to the main repository. Developers ---------- Core developers: * Cyrille Rosset * Andrea Zonca * Martin Reinecke * Leo Singer Contributors: * Pierre Chanial * Yu Feng * Duncan Hanson * Sergey Koposov * Maude Martin Lejeune * Paul Price * Maurizio Tomasi Acknowledgements ---------------- Note that, as stated `here `_ publications based on work using the HEALPix software package should include both of the following: 1. an acknowledgment statement: "Some of the results in this paper have been derived using the HEALPix (Górski et al., 2005) package". The complete reference is: Górski, K.M., E. Hivon, A.J. Banday, B.D. Wandelt, F.K. Hansen, M. Reinecke, and M. Bartelmann, HEALPix: A Framework for High-resolution Discretization and Fast Analysis of Data Distributed on the Sphere, Ap.J., 622, 759-771, 2005. 2. at the first use of the HEALPix acronym, a footnote placed in the main body of the paper referring to the HEALPix web site, currently http://healpix.sf.net As healpy is based on HEALPix Software (the C++ library), the same condition applies to it. healpy-1.8.1/CHANGELOG.rst0000654000175000017530000000475712351601560015450 0ustar zoncaplanck00000000000000Release 1.8.1, 22 Jun 2014 * Added `common.pxd` to source tarball * Check that nside is less than 2^30 Release 1.8.0, 21 Jun 2014 * Python 3 support * Fixed bug in `get_interpol_ring`: * Performance improvements in `_query_disc.pyx`: Release 1.7.4, 26 Feb 2014 * Fix bug for MAC OS X build Release 1.7.3, 28 Jan 2014 * Minor cleanup for submitting debian package Release 1.7.2, 27 Jan 2014 * now package does not require autotools, fixes #155 Release 1.7.1, 23 Jan 2014 * bugfix for Anaconda/Canopy on MAC OSX #152, #153 * fixed packaging issue #154 Release 1.7.0, 14 Jan 2014 * rewritten spherical armonics unit tests, now it uses low res maps included in the repository * fix in HEALPix C++ build flags allows easier install on MAC-OSX and other python environments (e.g. anaconda) * orthview: orthografic projection * fixed bug in monopole removal in anafast Release 1.6.3, 26 Aug 2013: * updated C++ sources to 3.11 * verbose=True default for most functions Release 1.6.2, 11 Jun 2013: * ez_setup, switch from distribute to the new setuptools Release 1.6.0, 15th March 2013: * support for NSIDE>8192, this broke compatibility with 32bit systems * using the new autotools based build system of healpix_cxx * pkg-config based install for cfitsio and healpix_cxx * common definition file for cython modules * test build script * new matplotlib based mollview in healpy.newvisufunc Release 1.5.0, 16th January 2013: * Healpix C++ sources and cython compiled files removed from the repository, they are however added for the release tarballs * Added back support for CFITSIO_EXT_INC and CFITSIO_EXT_LIB, but with same definition of HealPix * gauss_beam: gaussian beam transfer function Release 1.4.1, 5th November 2012: * Removed support for CFITSIO_EXT_INC and CFITSIO_EXT_LIB * Support for linking with libcfitsio.so or libcfitsio.dyn Release 1.4, 4th September 2012: * Support for building using an external HealPix library, by Leo Singer * fixes on masked array maps Release 1.3, 21th August 2012: * all functions covered with unit testing or doctests * rewrote setup.py using distutils, by Leo Singer * all functions accept and return masked arrays created with `hp.ma` * `read_cl` and `write_cl` support polarization * matplotlib imported only after first plotting function is called healpy-1.8.1/COPYING0000650000175000017530000004313311705033043014442 0ustar zoncaplanck00000000000000 GNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc. 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. 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You may modify your copy or copies of the Program or any portion of it, thus forming a work based on the Program, and copy and distribute such modifications or work under the terms of Section 1 above, provided that you also meet all of these conditions: a) You must cause the modified files to carry prominent notices stating that you changed the files and the date of any change. b) You must cause any work that you distribute or publish, that in whole or in part contains or is derived from the Program or any part thereof, to be licensed as a whole at no charge to all third parties under the terms of this License. c) If the modified program normally reads commands interactively when run, you must cause it, when started running for such interactive use in the most ordinary way, to print or display an announcement including an appropriate copyright notice and a notice that there is no warranty (or else, saying that you provide a warranty) and that users may redistribute the program under these conditions, and telling the user how to view a copy of this License. (Exception: if the Program itself is interactive but does not normally print such an announcement, your work based on the Program is not required to print an announcement.) These requirements apply to the modified work as a whole. If identifiable sections of that work are not derived from the Program, and can be reasonably considered independent and separate works in themselves, then this License, and its terms, do not apply to those sections when you distribute them as separate works. But when you distribute the same sections as part of a whole which is a work based on the Program, the distribution of the whole must be on the terms of this License, whose permissions for other licensees extend to the entire whole, and thus to each and every part regardless of who wrote it. Thus, it is not the intent of this section to claim rights or contest your rights to work written entirely by you; rather, the intent is to exercise the right to control the distribution of derivative or collective works based on the Program. In addition, mere aggregation of another work not based on the Program with the Program (or with a work based on the Program) on a volume of a storage or distribution medium does not bring the other work under the scope of this License. 3. You may copy and distribute the Program (or a work based on it, under Section 2) in object code or executable form under the terms of Sections 1 and 2 above provided that you also do one of the following: a) Accompany it with the complete corresponding machine-readable source code, which must be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, b) Accompany it with a written offer, valid for at least three years, to give any third party, for a charge no more than your cost of physically performing source distribution, a complete machine-readable copy of the corresponding source code, to be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, c) Accompany it with the information you received as to the offer to distribute corresponding source code. (This alternative is allowed only for noncommercial distribution and only if you received the program in object code or executable form with such an offer, in accord with Subsection b above.) The source code for a work means the preferred form of the work for making modifications to it. For an executable work, complete source code means all the source code for all modules it contains, plus any associated interface definition files, plus the scripts used to control compilation and installation of the executable. However, as a special exception, the source code distributed need not include anything that is normally distributed (in either source or binary form) with the major components (compiler, kernel, and so on) of the operating system on which the executable runs, unless that component itself accompanies the executable. If distribution of executable or object code is made by offering access to copy from a designated place, then offering equivalent access to copy the source code from the same place counts as distribution of the source code, even though third parties are not compelled to copy the source along with the object code. 4. You may not copy, modify, sublicense, or distribute the Program except as expressly provided under this License. Any attempt otherwise to copy, modify, sublicense or distribute the Program is void, and will automatically terminate your rights under this License. However, parties who have received copies, or rights, from you under this License will not have their licenses terminated so long as such parties remain in full compliance. 5. You are not required to accept this License, since you have not signed it. However, nothing else grants you permission to modify or distribute the Program or its derivative works. These actions are prohibited by law if you do not accept this License. Therefore, by modifying or distributing the Program (or any work based on the Program), you indicate your acceptance of this License to do so, and all its terms and conditions for copying, distributing or modifying the Program or works based on it. 6. Each time you redistribute the Program (or any work based on the Program), the recipient automatically receives a license from the original licensor to copy, distribute or modify the Program subject to these terms and conditions. You may not impose any further restrictions on the recipients' exercise of the rights granted herein. You are not responsible for enforcing compliance by third parties to this License. 7. If, as a consequence of a court judgment or allegation of patent infringement or for any other reason (not limited to patent issues), conditions are imposed on you (whether by court order, agreement or otherwise) that contradict the conditions of this License, they do not excuse you from the conditions of this License. If you cannot distribute so as to satisfy simultaneously your obligations under this License and any other pertinent obligations, then as a consequence you may not distribute the Program at all. For example, if a patent license would not permit royalty-free redistribution of the Program by all those who receive copies directly or indirectly through you, then the only way you could satisfy both it and this License would be to refrain entirely from distribution of the Program. If any portion of this section is held invalid or unenforceable under any particular circumstance, the balance of the section is intended to apply and the section as a whole is intended to apply in other circumstances. It is not the purpose of this section to induce you to infringe any patents or other property right claims or to contest validity of any such claims; this section has the sole purpose of protecting the integrity of the free software distribution system, which is implemented by public license practices. Many people have made generous contributions to the wide range of software distributed through that system in reliance on consistent application of that system; it is up to the author/donor to decide if he or she is willing to distribute software through any other system and a licensee cannot impose that choice. This section is intended to make thoroughly clear what is believed to be a consequence of the rest of this License. 8. If the distribution and/or use of the Program is restricted in certain countries either by patents or by copyrighted interfaces, the original copyright holder who places the Program under this License may add an explicit geographical distribution limitation excluding those countries, so that distribution is permitted only in or among countries not thus excluded. In such case, this License incorporates the limitation as if written in the body of this License. 9. The Free Software Foundation may publish revised and/or new versions of the General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns. Each version is given a distinguishing version number. If the Program specifies a version number of this License which applies to it and "any later version", you have the option of following the terms and conditions either of that version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of this License, you may choose any version ever published by the Free Software Foundation. 10. If you wish to incorporate parts of the Program into other free programs whose distribution conditions are different, write to the author to ask for permission. For software which is copyrighted by the Free Software Foundation, write to the Free Software Foundation; we sometimes make exceptions for this. Our decision will be guided by the two goals of preserving the free status of all derivatives of our free software and of promoting the sharing and reuse of software generally. NO WARRANTY 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. END OF TERMS AND CONDITIONS How to Apply These Terms to Your New Programs If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms. To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found. Copyright (C) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA Also add information on how to contact you by electronic and paper mail. If the program is interactive, make it output a short notice like this when it starts in an interactive mode: Gnomovision version 69, Copyright (C) year name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details. The hypothetical commands `show w' and `show c' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w' and `show c'; they could even be mouse-clicks or menu items--whatever suits your program. You should also get your employer (if you work as a programmer) or your school, if any, to sign a "copyright disclaimer" for the program, if necessary. Here is a sample; alter the names: Yoyodyne, Inc., hereby disclaims all copyright interest in the program `Gnomovision' (which makes passes at compilers) written by James Hacker. , 1 April 1989 Ty Coon, President of Vice This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Library General Public License instead of this License. healpy-1.8.1/PKG-INFO0000644000175000017500000000165312351601662014355 0ustar zoncazonca00000000000000Metadata-Version: 1.1 Name: healpy Version: 1.8.1 Summary: Healpix tools package for Python Home-page: http://github.com/healpy Author: C. Rosset, A. Zonca Author-email: cyrille.rosset@apc.univ-paris-diderot.fr License: GPLv2 Description: UNKNOWN Platform: UNKNOWN Classifier: Development Status :: 5 - Production/Stable Classifier: Environment :: Console Classifier: Intended Audience :: Science/Research Classifier: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) Classifier: Operating System :: POSIX Classifier: Programming Language :: C++ Classifier: Programming Language :: Python :: 2.6 Classifier: Programming Language :: Python :: 2.7 Classifier: Programming Language :: Python :: 3.2 Classifier: Programming Language :: Python :: 3.3 Classifier: Programming Language :: Python :: 3.4 Classifier: Topic :: Scientific/Engineering :: Astronomy Classifier: Topic :: Scientific/Engineering :: Visualization healpy-1.8.1/pykg_config.py0000650000175000017530000000025112255117320016254 0ustar zoncaplanck00000000000000# Helper to run pykg-config, whether it is installed or lives in a zipped egg. from pkg_resources import run_script run_script('pykg-config >= 1.2.0', 'pykg-config.py') healpy-1.8.1/CITATION0000650000175000017530000000222312255117320014541 0ustar zoncaplanck00000000000000Use of the HEALPix/healpy software package should be explicitly acknowledged in all publications in the following form: * an acknowledgment statement – "Some of the results in this paper have been derived using the HEALPix (K.M. Górski et al., 2005, ApJ, 622, p759) package" * at the first use of the HEALPix acronym, a footnote placed in the main body of the paper referring to the HEALPix website – currently http://healpix.sourceforge.net BibTeX record: @ARTICLE{2005ApJ...622..759G, author = {{G{\'o}rski}, K.~M. and {Hivon}, E. and {Banday}, A.~J. and {Wandelt}, B.~D. and {Hansen}, F.~K. and {Reinecke}, M. and {Bartelmann}, M.}, title = "{HEALPix: A Framework for High-Resolution Discretization and Fast Analysis of Data Distributed on the Sphere}", journal = {\apj}, eprint = {arXiv:astro-ph/0409513}, keywords = {Cosmology: Cosmic Microwave Background, Cosmology: Observations, Methods: Statistical}, year = 2005, month = apr, volume = 622, pages = {759-771}, doi = {10.1086/427976}, adsurl = {http://adsabs.harvard.edu/abs/2005ApJ...622..759G}, adsnote = {Provided by the SAO/NASA Astrophysics Data System} } healpy-1.8.1/cfitsio/0000755000175000017500000000000012351601662014713 5ustar zoncazonca00000000000000healpy-1.8.1/cfitsio/testprog.std0000654000175000017530000020700012272000775017437 0ustar zoncaplanck00000000000000SIMPLE = T / file does conform to FITS standard BITPIX = 32 / number of bits per data pixel NAXIS = 2 / number of data axes NAXIS1 = 10 / length of data axis 1 NAXIS2 = 2 / length of data axis 2 EXTEND = T / FITS dataset may contain extensions COMMENT FITS (Flexible Image Transport System) format is defined in 'AstronomyCOMMENT and Astrophysics', volume 376, page 359; bibcode: 2001A&A...376..359H KEY_PREC= 'This keyword was written by fxprec' / comment goes here CARD1 = '12345678901234567890123456789012345678901234567890123456789012345678'CARD2 = '1234567890123456789012345678901234567890123456789012345678901234''67'CARD3 = '1234567890123456789012345678901234567890123456789012345678901234'''''CARD4 = '1234567890123456789012345678901234567890123456789012345678901234567' KEY_PKYS= 'value_string' / fxpkys comment KEY_PKYL= T / fxpkyl comment KEY_PKYJ= 11 / [feet/second/second] fxpkyj comment KEY_PKYF= 12.12121 / fxpkyf comment KEY_PKYE= 1.313131E+01 / fxpkye comment KEY_PKYG= 14.14141414141414 / fxpkyg comment KEY_PKYD= 1.51515151515152E+01 / fxpkyd comment KEY_PKYC= (1.313131E+01, 1.414141E+01) / fxpkyc comment KEY_PKYM= (1.51515151515152E+01, 1.61616161616162E+01) / fxpkym comment KEY_PKFC= (13.131313, 14.141414) / fxpkfc comment KEY_PKFM= (15.15151515151515, 16.16161616161616) / fxpkfm comment KEY_PKLS= 'This is a very long string value that is continued over more than o&'CONTINUE 'ne keyword.' / fxpkls comment LONGSTRN= 'OGIP 1.0' / The HEASARC Long String Convention may be used.COMMENT This FITS file may contain long string keyword values that are COMMENT continued over multiple keywords. The HEASARC convention uses the & COMMENT character at the end of each substring which is then continued COMMENT on the next keyword which has the name CONTINUE. KEY_PKYT= 12345678.1234567890123456 / fxpkyt comment COMMENT This keyword was modified by fxmrec KY_UCRD = 'This keyword was updated by fxucrd' NEWIKYS = 'updated_string' / ikys comment KY_IKYJ = 51 / This is a modified comment KY_IKYL = T / ikyl comment KY_IKYE = -1.3346E+01 / ikye comment KY_IKYD = -1.33456789012346E+01 / modified comment KY_IKYF = -13.3456 / ikyf comment KY_IKYG = -13.3456789012346 / ikyg comment KY_PKNS1= 'first string' / fxpkns comment KY_PKNS2= 'second string' / fxpkns comment KY_PKNS3= ' ' / fxpkns comment KY_PKNL1= T / fxpknl comment KY_PKNL2= F / fxpknl comment KY_PKNL3= T / fxpknl comment KY_PKNJ1= 11 / fxpknj comment KY_PKNJ2= 12 / fxpknj comment KY_PKNJ3= 13 / fxpknj comment KY_PKNF1= 12.12121 / fxpknf comment KY_PKNF2= 13.13131 / fxpknf comment KY_PKNF3= 14.14141 / fxpknf comment KY_PKNE1= 1.313131E+01 / fxpkne comment KY_PKNE2= 1.414141E+01 / fxpkne comment KY_PKNE3= 1.515152E+01 / fxpkne comment KY_PKNG1= 14.1414141414141 / fxpkng comment KY_PKNG2= 15.1515151515152 / fxpkng comment KY_PKNG3= 16.1616161616162 / fxpkng comment KY_PKND1= 1.51515151515152E+01 / fxpknd comment KY_PKND2= 1.61616161616162E+01 / fxpknd comment KY_PKND3= 1.71717171717172E+01 / fxpknd comment TSTRING = '1 ' / tstring comment TLOGICAL= T / tlogical comment TBYTE = 11 / tbyte comment TSHORT = 21 / tshort comment TINT = 31 / tint comment TLONG = 41 / tlong comment TFLOAT = 42. / tfloat comment TDOUBLE = 82. / tdouble comment BLANK = -99 / value to use for undefined pixels KY_PKNE4= 1.313131E+01 / fxpkne comment TMPCARDA= 1001 / this is the 1st template card TMPCARD2= 'ABCD ' / this is the 2nd template card TMPCARD3= 1001.23 / this is the 3rd template card COMMENT this is the 5th template card HISTORY this is the 6th template card TMPCARD7= / comment for null keyword END ÿÿÿÿÿÿÿÿÿ ÿÿÿ ÿÿÿÿÿÿXTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / 8-bit bytes NAXIS = 2 / 2-dimensional binary table NAXIS1 = 61 / width of table in bytes NAXIS2 = 20 / number of rows in table PCOUNT = 0 / size of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 10 / number of fields in each row TTYPE1 = 'Avalue ' / label for field 1 TFORM1 = '15A ' / data format of field: ASCII Character TTYPE2 = 'Lvalue ' / label for field 2 TFORM2 = '1L ' / data format of field: 1-byte LOGICAL TUNIT2 = 'm**2 ' / physical unit of field TTYPE3 = 'Xvalue ' / label for field 3 TFORM3 = '16X ' / data format of field: BIT TUNIT3 = 'cm ' / physical unit of field TTYPE4 = 'Bvalue ' / label for field 4 TFORM4 = '1B ' / data format of field: BYTE TUNIT4 = 'erg/s ' / physical unit of field TTYPE5 = 'Ivalue ' / label for field 5 TFORM5 = '1I ' / data format of field: 2-byte INTEGER TUNIT5 = 'km/s ' / physical unit of field TTYPE6 = 'Jvalue ' / label for field 6 TFORM6 = '1J ' / data format of field: 4-byte INTEGER TTYPE7 = 'Evalue ' / label for field 7 TFORM7 = '1E ' / data format of field: 4-byte REAL TTYPE8 = 'Dvalue ' / label for field 8 TFORM8 = '1D ' / data format of field: 8-byte DOUBLE TTYPE9 = 'Cvalue ' / label for field 9 TFORM9 = '1C ' / data format of field: COMPLEX TTYPE10 = 'Mvalue ' / label for field 10 TFORM10 = '1M ' / data format of field: DOUBLE COMPLEX EXTNAME = 'Test-BINTABLE' / name of this binary table extension EXTVER = 3 / extension version number TNULL4 = 77 / value for undefined pixels TNULL5 = 77 / value for undefined pixels TNULL6 = 77 / value for undefined pixels TSCAL4 = 1000 / scaling factor TSCAL5 = 1 / scaling factor TSCAL6 = 100 / scaling factor TZERO4 = 0 / scaling offset TZERO5 = 32768 / scaling offset TZERO6 = 100 / scaling offset NEW_KEY = 'written by fxprec' / to change checksum END €ÿÿÿÿƒè §c!GBÿŽMMMXTENSION= 'IMAGE ' / IMAGE extension BITPIX = -32 / number of bits per data pixel NAXIS = 2 / number of data axes NAXIS1 = 15 / length of data axis 1 NAXIS2 = 25 / length of data axis 2 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 END ?€@@@@€@ @À@àAAA A0A@APA`A A0A@APA`ApA€AˆAA˜A A¨A°A¸AÀA A¨A°A¸AÀAÈAÐAØAàAèAðAøBBBAðAøBBBB BBBBB B$B(B,B0B B$B(B,¿€ÀÀ@À€À ÀÀÀàÁÁBXBHBLBPBTÁ Á0Á@ÁPÁ`ÁpÁ€ÁˆÁÁ˜B€BpBtBxB|Á Á¨Á°Á¸ÁÀÁÈÁÐÁØÁàÁèB”BŒBŽBB’ÁðÁøÂ ÂÂÂÂB¨B B¢B¤B¦Â Â$Â(Â,Â0Â4Â8Â<Â@ÂDB¼B´B¶B¸BºÂHÂLÂPÂTÂXÂ\Â`ÂdÂhÂlBÐBÈBÊBÌBÎÂpÂtÂxÂ|€‚„†ˆŠBäBÜBÞBàB⌎’”–˜šœžBøBðBòBôBö ¢¤¦¨ª¬®°²CCCCC´¶¸º¼¾ÂÀÂÂÂÄÂÆCC C CCCCCCCCCCCCCCCCCCCCCCCC C!C"C#C$C C!C"C#C$C%C&C'C(C)C*C+C,C-C.C*C+C,C-C.C/C0C1C2C3C4C5C6C7C8C4C5C6C7C8C9C:C;C<C=C>C?C@CACBC>C?C@CACBCCCDCECFCGCHCICJCKCLCHCICJCKCLCMCNCOCPCQCRCSCTCUCVCRCSCTCUCVCWCXCYCZC[C\C]C^C_C`C\C]C^C_C`CaCbCcCdCeCfCgChCiCjCfCgChCiCjCkClCmCnCoCpCqCrCsCtCpCqCrCsCtCuCvCwCxCyCzC{C|C}C~XTENSION= 'TABLE ' / ASCII table extension BITPIX = 8 / 8-bit ASCII characters NAXIS = 2 / 2-dimensional ASCII table NAXIS1 = 76 / width of table in characters NAXIS2 = 12 / number of rows in table PCOUNT = 0 / no group parameters (required keyword) GCOUNT = 1 / one data group (required keyword) TFIELDS = 5 / number of fields in each row TTYPE1 = 'Name ' / label for field 1 TBCOL1 = 1 / beginning column of field 1 TFORM1 = 'A15 ' / Fortran-77 format of field TTYPE2 = 'Ivalue ' / label for field 2 TBCOL2 = 17 / beginning column of field 2 TFORM2 = 'I10 ' / Fortran-77 format of field TUNIT2 = 'm**2 ' / physical unit of field TTYPE3 = 'Evalue ' / label for field 4 TBCOL3 = 28 / beginning column of field 4 TFORM3 = 'E12.5 ' / Fortran-77 format of field TUNIT3 = 'erg/s ' / physical unit of field TTYPE4 = 'Dvalue ' / label for field 5 TBCOL4 = 41 / beginning column of field 5 TFORM4 = 'D21.14 ' / Fortran-77 format of field TUNIT4 = 'km/s ' / physical unit of field EXTNAME = 'Test-ASCII' / name of this ASCII table extension EXTVER = 2 / extension version number TNULL1 = 'null1 ' / value for undefined pixels TNULL2 = 'null2 ' / value for undefined pixels TNULL3 = 'null4 ' / value for undefined pixels TNULL4 = 'null5 ' / value for undefined pixels TTYPE5 = 'INSERT_COL' / label for field TFORM5 = 'F14.6 ' / format of field TBCOL5 = 63 / beginning column of field END first string 1 1.00000E+00 1.00000000000000E+00 second string 2 2.00000E+00 2.00000000000000E+00 3 3.00000E+00 3.00000000000000E+00 null1 4 4.00000E+00 4.00000000000000E+00 5 5.00000E+00 5.00000000000000E+00 6 6.00000E+00 6.00000000000000E+00 9 9.00000E+00 9.00000000000000E+00 10 1.00000E+01 1.00000000000000E+01 null2 null4 null5 XTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / 8-bit bytes NAXIS = 2 / 2-dimensional binary table NAXIS1 = 61 / width of table in bytes NAXIS2 = 22 / number of rows in table PCOUNT = 0 / size of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 10 / number of fields in each row TTYPE1 = 'Avalue ' / label for field 1 TFORM1 = '15A ' / data format of field: ASCII Character TTYPE2 = 'Lvalue ' / label for field 2 TFORM2 = '1L ' / data format of field: 1-byte LOGICAL TUNIT2 = 'm**2 ' / physical unit of field TTYPE3 = 'Xvalue ' / label for field 3 TFORM3 = '16X ' / data format of field: BIT TUNIT3 = 'cm ' / physical unit of field TTYPE4 = 'Bvalue ' / label for field 4 TFORM4 = '1B ' / data format of field: BYTE TUNIT4 = 'erg/s ' / physical unit of field TTYPE5 = 'Ivalue ' / label for field 5 TFORM5 = '1I ' / data format of field: 2-byte INTEGER TUNIT5 = 'km/s ' / physical unit of field TTYPE6 = 'Evalue ' / label for field 7 TFORM6 = '1E ' / data format of field: 4-byte REAL TTYPE7 = 'Dvalue ' / label for field 8 TFORM7 = '1D ' / data format of field: 8-byte DOUBLE TTYPE9 = 'Cvalue ' / label for field 9 TFORM9 = '1C ' / data format of field: COMPLEX TTYPE10 = 'Mvalue ' / label for field 10 TFORM10 = '1M ' / data format of field: DOUBLE COMPLEX EXTNAME = 'Test-BINTABLE' / name of this binary table extension EXTVER = 1 / extension version number TNULL4 = 99 / value for undefined pixels TNULL5 = 99 / value for undefined pixels TDIM3 = '(1,2,8) ' / size of the multidimensional array KEY_PREC= 'This keyword was written by f_prec' / comment here TTYPE8 = 'INSERT_COL' / label for field TFORM8 = '1E ' / format of field END first string FLp?€?ðÿÿÿÿ?€À?ðÀsecond string Tð|@@ÿÿÿÿ@@À€@Àÿÿÿÿÿÿÿÿÿÿÿÿ F@@@ÿÿÿÿ@ ÀÀ@À FÿüÀ€Àÿÿÿÿ@àÁ@À T@ @ÿÿÿÿAÁ @"À$TÿúÀÀÀÿÿÿÿA0Á@@&À(F A@"ÿÿÿÿAˆÁ@1À2TÿöÁ À$A˜Á @3À4ccÿÿÿÿÿÿÿÿÿÿÿÿT A@@(FccÿÿÿÿÿÿÿÿÿÿÿÿFÿòÁ`À,FccÿÿÿÿÿÿÿÿÿÿÿÿFÿðÁ€À0TccÿÿÿÿÿÿÿÿÿÿÿÿTÿîÁÀ2TccÿÿÿÿÿÿÿÿÿÿÿÿTÿìÁ À4FccÿÿÿÿÿÿÿÿÿÿÿÿXTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / 8-bit bytes NAXIS = 2 / 2-dimensional binary table NAXIS1 = 80 / width of table in bytes NAXIS2 = 20 / number of rows in table PCOUNT = 4446 / size of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 10 / number of fields in each row TTYPE1 = 'Avalue ' / label for field 1 TFORM1 = '1PA(20) ' / data format of field: variable length array TTYPE2 = 'Lvalue ' / label for field 2 TFORM2 = '1PL(20) ' / data format of field: variable length array TUNIT2 = 'm**2 ' / physical unit of field TTYPE3 = 'Xvalue ' / label for field 3 TFORM3 = '1PB(3) ' / data format of field: variable length array TUNIT3 = 'cm ' / physical unit of field TTYPE4 = 'Bvalue ' / label for field 4 TFORM4 = '1PB(20) ' / data format of field: variable length array TUNIT4 = 'erg/s ' / physical unit of field TTYPE5 = 'Ivalue ' / label for field 5 TFORM5 = '1PI(20) ' / data format of field: variable length array TUNIT5 = 'km/s ' / physical unit of field TTYPE6 = 'Jvalue ' / label for field 6 TFORM6 = '1PJ(20) ' / data format of field: variable length array TTYPE7 = 'Evalue ' / label for field 7 TFORM7 = '1PE(20) ' / data format of field: variable length array TTYPE8 = 'Dvalue ' / label for field 8 TFORM8 = '1PD(20) ' / data format of field: variable length array TTYPE9 = 'Cvalue ' / label for field 9 TFORM9 = '1PC(0) ' / data format of field: variable length array TTYPE10 = 'Mvalue ' / label for field 10 TFORM10 = '1PM(0) ' / data format of field: variable length array EXTNAME = 'Test-BINTABLE' / name of this binary table extension EXTVER = 4 / extension version number TNULL4 = 88 / value for undefined pixels TNULL5 = 88 / value 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@"@$@&@(ÿÿÿÿÿÿÿÿ@,abcdefghijklmnoFTFFTTFFFTTTFFLp X X X?€@@@@€@ @À@àAAA A0A@APÿÿÿÿAp?ð@@@@@@@ @"@$@&@(@*ÿÿÿÿÿÿÿÿ@.abcdefghijklmnopFTFFTTFFFTTTFFFLp X X X?€@@@@€@ @À@àAAA A0A@APA`ÿÿÿÿA€?ð@@@@@@@ @"@$@&@(@*@,ÿÿÿÿÿÿÿÿ@0abcdefghijklmnopqFTFFTTFFFTTTFFFTLp€ X X X?€@@@@€@ @À@àAAA A0A@APA`ApÿÿÿÿAˆ?ð@@@@@@@ @"@$@&@(@*@,@.ÿÿÿÿÿÿÿÿ@1abcdefghijklmnopqrFTFFTTFFFTTTFFFFTLpÀ X X X?€@@@@€@ @À@àAAA A0A@APA`ApA€ÿÿÿÿA?ð@@@@@@@ @"@$@&@(@*@,@.@0ÿÿÿÿÿÿÿÿ@2abcdefghijklmnopqrsFTFFTTFFFTTTFFFFTTLpà X X X?€@@@@€@ @À@àAAA A0A@APA`ApA€AˆÿÿÿÿA˜?ð@@@@@@@ @"@$@&@(@*@,@.@0@1ÿÿÿÿÿÿÿÿ@3abcdefghijklmnopqrstFTFFTTFFFTTTFFFFTTTLpð X X X?€@@@@€@ @À@àAAA A0A@APA`ApA€AˆAÿÿÿÿA ?ð@@@@@@@ @"@$@&@(@*@,@.@0@1@2ÿÿÿÿÿÿÿÿ@4XTENSION= 'IMAGE ' / IMAGE extension BITPIX = 32 / number of bits per data pixel NAXIS = 2 / number of data axes NAXIS1 = 10 / length of data axis 1 NAXIS2 = 2 / length of data axis 2 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 CRVAL1 = 4.5830000000E+01 / comment CRVAL2 = 6.3570000000E+01 / comment CRPIX1 = 2.5600000000E+02 / comment CRPIX2 = 2.5700000000E+02 / comment CDELT1 = -2.7777700000E-03 / comment CDELT2 = 2.7777700000E-03 / comment CTYPE1 = 'RA---TAN' / comment CTYPE2 = 'DEC--TAN' / comment END  XTENSION= 'TABLE ' / ASCII table extension BITPIX = 8 / 8-bit ASCII characters NAXIS = 2 / 2-dimensional ASCII table NAXIS1 = 80 / width of table in characters NAXIS2 = 11 / number of rows in table PCOUNT = 0 / no group parameters (required keyword) GCOUNT = 1 / one data group (required keyword) TFIELDS = 5 / number of fields in each row TTYPE1 = 'Name ' / label for field 1 TBCOL1 = 1 / beginning column of field 1 TFORM1 = 'A15 ' / Fortran-77 format of field TTYPE2 = 'Ivalue ' / label for field 2 TBCOL2 = 17 / beginning column of field 2 TFORM2 = 'I11 ' / Fortran-77 format of field TUNIT2 = 'm**2 ' / physical unit of field TTYPE3 = 'Fvalue ' / label for field 3 TBCOL3 = 29 / beginning column of field 3 TFORM3 = 'F15.6 ' / Fortran-77 format of field TUNIT3 = 'cm ' / physical unit of field TTYPE4 = 'Evalue ' / label for field 4 TBCOL4 = 45 / beginning column of field 4 TFORM4 = 'E13.5 ' / Fortran-77 format of field TUNIT4 = 'erg/s ' / physical unit of field TTYPE5 = 'Dvalue ' / label for field 5 TBCOL5 = 59 / beginning column of field 5 TFORM5 = 'D22.14 ' / Fortran-77 format of field TUNIT5 = 'km/s ' / physical unit of field EXTNAME = 'new_table' / name of this ASCII table extension EXTVER = 5 / extension version number END first string 0 0.000000 0.00000E+00 0.00000000000000E+00second string 3 3.000000 3.00000E+00 3.00000000000000E+00 6 6.000000 6.00000E+00 6.00000000000000E+00 9 9.000000 9.00000E+00 9.00000000000000E+00 12 12.000000 1.20000E+01 1.20000000000000E+01 15 15.000000 1.50000E+01 1.50000000000000E+01 18 18.000000 1.80000E+01 1.80000000000000E+01 21 21.000000 2.10000E+01 2.10000000000000E+01 24 24.000000 2.40000E+01 2.40000000000000E+01 27 27.000000 2.70000E+01 2.70000000000000E+01 healpy-1.8.1/cfitsio/getcolb.c0000654000175000017530000022552112272000775016647 0ustar zoncaplanck00000000000000/* This file, getcolb.c, contains routines that read data elements from */ /* a FITS image or table, with unsigned char (unsigned byte) data type. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffgpvb( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ unsigned char nulval, /* I - value for undefined pixels */ unsigned char *array, /* O - array of values that are returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Undefined elements will be set equal to NULVAL, unless NULVAL=0 in which case no checking for undefined values will be performed. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { long row; char cdummy; int nullcheck = 1; unsigned char nullvalue; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ nullvalue = nulval; /* set local variable */ fits_read_compressed_pixels(fptr, TBYTE, firstelem, nelem, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgclb(fptr, 2, row, firstelem, nelem, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgpfb( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ unsigned char *array, /* O - array of values that are returned */ char *nularray, /* O - array of null pixel flags */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any undefined pixels in the returned array will be set = 0 and the corresponding nularray value will be set = 1. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { long row; int nullcheck = 2; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_read_compressed_pixels(fptr, TBYTE, firstelem, nelem, nullcheck, NULL, array, nularray, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgclb(fptr, 2, row, firstelem, nelem, 1, 2, 0, array, nularray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffg2db(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ unsigned char nulval, /* set undefined pixels equal to this */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ unsigned char *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an entire 2-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any null values in the array will be set equal to the value of nulval, unless nulval = 0 in which case no null checking will be performed. */ { /* call the 3D reading routine, with the 3rd dimension = 1 */ ffg3db(fptr, group, nulval, ncols, naxis2, naxis1, naxis2, 1, array, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffg3db(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ unsigned char nulval, /* set undefined pixels equal to this */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG nrows, /* I - number of rows in each plane of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ LONGLONG naxis3, /* I - FITS image NAXIS3 value */ unsigned char *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an entire 3-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any null values in the array will be set equal to the value of nulval, unless nulval = 0 in which case no null checking will be performed. */ { long tablerow, ii, jj; LONGLONG narray, nfits; char cdummy; int nullcheck = 1; long inc[] = {1,1,1}; LONGLONG fpixel[] = {1,1,1}; LONGLONG lpixel[3]; unsigned char nullvalue; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ lpixel[0] = ncols; lpixel[1] = nrows; lpixel[2] = naxis3; nullvalue = nulval; /* set local variable */ fits_read_compressed_img(fptr, TBYTE, fpixel, lpixel, inc, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ tablerow=maxvalue(1,group); if (ncols == naxis1 && nrows == naxis2) /* arrays have same size? */ { /* all the image pixels are contiguous, so read all at once */ ffgclb(fptr, 2, tablerow, 1, naxis1 * naxis2 * naxis3, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } if (ncols < naxis1 || nrows < naxis2) return(*status = BAD_DIMEN); nfits = 1; /* next pixel in FITS image to read */ narray = 0; /* next pixel in output array to be filled */ /* loop over naxis3 planes in the data cube */ for (jj = 0; jj < naxis3; jj++) { /* loop over the naxis2 rows in the FITS image, */ /* reading naxis1 pixels to each row */ for (ii = 0; ii < naxis2; ii++) { if (ffgclb(fptr, 2, tablerow, nfits, naxis1, 1, 1, nulval, &array[narray], &cdummy, anynul, status) > 0) return(*status); nfits += naxis1; narray += ncols; } narray += (nrows - naxis2) * ncols; } return(*status); } /*--------------------------------------------------------------------------*/ int ffgsvb(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of the column to read (1 = 1st) */ int naxis, /* I - number of dimensions in the FITS array */ long *naxes, /* I - size of each dimension */ long *blc, /* I - 'bottom left corner' of the subsection */ long *trc, /* I - 'top right corner' of the subsection */ long *inc, /* I - increment to be applied in each dimension */ unsigned char nulval, /* I - value to set undefined pixels */ unsigned char *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read a subsection of data values from an image or a table column. This routine is set up to handle a maximum of nine dimensions. */ { long ii, i0, i1, i2, i3, i4, i5, i6, i7, i8, row, rstr, rstp, rinc; long str[9], stp[9], incr[9], dir[9]; long nelem, nultyp, ninc, numcol; LONGLONG felem, dsize[10], blcll[9], trcll[9]; int hdutype, anyf; char ldummy, msg[FLEN_ERRMSG]; int nullcheck = 1; unsigned char nullvalue; if (naxis < 1 || naxis > 9) { sprintf(msg, "NAXIS = %d in call to ffgsvb is out of range", naxis); ffpmsg(msg); return(*status = BAD_DIMEN); } if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ for (ii=0; ii < naxis; ii++) { blcll[ii] = blc[ii]; trcll[ii] = trc[ii]; } nullvalue = nulval; /* set local variable */ fits_read_compressed_img(fptr, TBYTE, blcll, trcll, inc, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* if this is a primary array, then the input COLNUM parameter should be interpreted as the row number, and we will alway read the image data from column 2 (any group parameters are in column 1). */ if (ffghdt(fptr, &hdutype, status) > 0) return(*status); if (hdutype == IMAGE_HDU) { /* this is a primary array, or image extension */ if (colnum == 0) { rstr = 1; rstp = 1; } else { rstr = colnum; rstp = colnum; } rinc = 1; numcol = 2; } else { /* this is a table, so the row info is in the (naxis+1) elements */ rstr = blc[naxis]; rstp = trc[naxis]; rinc = inc[naxis]; numcol = colnum; } nultyp = 1; if (anynul) *anynul = FALSE; i0 = 0; for (ii = 0; ii < 9; ii++) { str[ii] = 1; stp[ii] = 1; incr[ii] = 1; dsize[ii] = 1; dir[ii] = 1; } for (ii = 0; ii < naxis; ii++) { if (trc[ii] < blc[ii]) { if (hdutype == IMAGE_HDU) { dir[ii] = -1; } else { sprintf(msg, "ffgsvb: illegal range specified for axis %ld", ii + 1); ffpmsg(msg); return(*status = BAD_PIX_NUM); } } str[ii] = blc[ii]; stp[ii] = trc[ii]; incr[ii] = inc[ii]; dsize[ii + 1] = dsize[ii] * naxes[ii]; dsize[ii] = dsize[ii] * dir[ii]; } dsize[naxis] = dsize[naxis] * dir[naxis]; if (naxis == 1 && naxes[0] == 1) { /* This is not a vector column, so read all the rows at once */ nelem = (rstp - rstr) / rinc + 1; ninc = rinc; rstp = rstr; } else { /* have to read each row individually, in all dimensions */ nelem = (stp[0]*dir[0] - str[0]*dir[0]) / inc[0] + 1; ninc = incr[0] * dir[0]; } for (row = rstr; row <= rstp; row += rinc) { for (i8 = str[8]*dir[8]; i8 <= stp[8]*dir[8]; i8 += incr[8]) { for (i7 = str[7]*dir[7]; i7 <= stp[7]*dir[7]; i7 += incr[7]) { for (i6 = str[6]*dir[6]; i6 <= stp[6]*dir[6]; i6 += incr[6]) { for (i5 = str[5]*dir[5]; i5 <= stp[5]*dir[5]; i5 += incr[5]) { for (i4 = str[4]*dir[4]; i4 <= stp[4]*dir[4]; i4 += incr[4]) { for (i3 = str[3]*dir[3]; i3 <= stp[3]*dir[3]; i3 += incr[3]) { for (i2 = str[2]*dir[2]; i2 <= stp[2]*dir[2]; i2 += incr[2]) { for (i1 = str[1]*dir[1]; i1 <= stp[1]*dir[1]; i1 += incr[1]) { felem=str[0] + (i1 - dir[1]) * dsize[1] + (i2 - dir[2]) * dsize[2] + (i3 - dir[3]) * dsize[3] + (i4 - dir[4]) * dsize[4] + (i5 - dir[5]) * dsize[5] + (i6 - dir[6]) * dsize[6] + (i7 - dir[7]) * dsize[7] + (i8 - dir[8]) * dsize[8]; if ( ffgclb(fptr, numcol, row, felem, nelem, ninc, nultyp, nulval, &array[i0], &ldummy, &anyf, status) > 0) return(*status); if (anyf && anynul) *anynul = TRUE; i0 += nelem; } } } } } } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffgsfb(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of the column to read (1 = 1st) */ int naxis, /* I - number of dimensions in the FITS array */ long *naxes, /* I - size of each dimension */ long *blc, /* I - 'bottom left corner' of the subsection */ long *trc, /* I - 'top right corner' of the subsection */ long *inc, /* I - increment to be applied in each dimension */ unsigned char *array, /* O - array to be filled and returned */ char *flagval, /* O - set to 1 if corresponding value is null */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read a subsection of data values from an image or a table column. This routine is set up to handle a maximum of nine dimensions. */ { long ii,i0, i1,i2,i3,i4,i5,i6,i7,i8,row,rstr,rstp,rinc; long str[9],stp[9],incr[9],dsize[10]; LONGLONG blcll[9], trcll[9]; long felem, nelem, nultyp, ninc, numcol; int hdutype, anyf; unsigned char nulval = 0; char msg[FLEN_ERRMSG]; int nullcheck = 2; if (naxis < 1 || naxis > 9) { sprintf(msg, "NAXIS = %d in call to ffgsvb is out of range", naxis); ffpmsg(msg); return(*status = BAD_DIMEN); } if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ for (ii=0; ii < naxis; ii++) { blcll[ii] = blc[ii]; trcll[ii] = trc[ii]; } fits_read_compressed_img(fptr, TBYTE, blcll, trcll, inc, nullcheck, NULL, array, flagval, anynul, status); return(*status); } /* if this is a primary array, then the input COLNUM parameter should be interpreted as the row number, and we will alway read the image data from column 2 (any group parameters are in column 1). */ if (ffghdt(fptr, &hdutype, status) > 0) return(*status); if (hdutype == IMAGE_HDU) { /* this is a primary array, or image extension */ if (colnum == 0) { rstr = 1; rstp = 1; } else { rstr = colnum; rstp = colnum; } rinc = 1; numcol = 2; } else { /* this is a table, so the row info is in the (naxis+1) elements */ rstr = blc[naxis]; rstp = trc[naxis]; rinc = inc[naxis]; numcol = colnum; } nultyp = 2; if (anynul) *anynul = FALSE; i0 = 0; for (ii = 0; ii < 9; ii++) { str[ii] = 1; stp[ii] = 1; incr[ii] = 1; dsize[ii] = 1; } for (ii = 0; ii < naxis; ii++) { if (trc[ii] < blc[ii]) { sprintf(msg, "ffgsvb: illegal range specified for axis %ld", ii + 1); ffpmsg(msg); return(*status = BAD_PIX_NUM); } str[ii] = blc[ii]; stp[ii] = trc[ii]; incr[ii] = inc[ii]; dsize[ii + 1] = dsize[ii] * naxes[ii]; } if (naxis == 1 && naxes[0] == 1) { /* This is not a vector column, so read all the rows at once */ nelem = (rstp - rstr) / rinc + 1; ninc = rinc; rstp = rstr; } else { /* have to read each row individually, in all dimensions */ nelem = (stp[0] - str[0]) / inc[0] + 1; ninc = incr[0]; } for (row = rstr; row <= rstp; row += rinc) { for (i8 = str[8]; i8 <= stp[8]; i8 += incr[8]) { for (i7 = str[7]; i7 <= stp[7]; i7 += incr[7]) { for (i6 = str[6]; i6 <= stp[6]; i6 += incr[6]) { for (i5 = str[5]; i5 <= stp[5]; i5 += incr[5]) { for (i4 = str[4]; i4 <= stp[4]; i4 += incr[4]) { for (i3 = str[3]; i3 <= stp[3]; i3 += incr[3]) { for (i2 = str[2]; i2 <= stp[2]; i2 += incr[2]) { for (i1 = str[1]; i1 <= stp[1]; i1 += incr[1]) { felem=str[0] + (i1 - 1) * dsize[1] + (i2 - 1) * dsize[2] + (i3 - 1) * dsize[3] + (i4 - 1) * dsize[4] + (i5 - 1) * dsize[5] + (i6 - 1) * dsize[6] + (i7 - 1) * dsize[7] + (i8 - 1) * dsize[8]; if ( ffgclb(fptr, numcol, row, felem, nelem, ninc, nultyp, nulval, &array[i0], &flagval[i0], &anyf, status) > 0) return(*status); if (anyf && anynul) *anynul = TRUE; i0 += nelem; } } } } } } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffggpb( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ long firstelem, /* I - first vector element to read (1 = 1st) */ long nelem, /* I - number of values to read */ unsigned char *array, /* O - array of values that are returned */ int *status) /* IO - error status */ /* Read an array of group parameters from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). */ { long row; int idummy; char cdummy; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgclb(fptr, 1, row, firstelem, nelem, 1, 1, 0, array, &cdummy, &idummy, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcvb(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ unsigned char nulval, /* I - value for null pixels */ unsigned char *array, /* O - array of values that are read */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Any undefined pixels will be set equal to the value of 'nulval' unless nulval = 0 in which case no checks for undefined pixels will be made. */ { char cdummy; ffgclb(fptr, colnum, firstrow, firstelem, nelem, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcfb(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ unsigned char *array, /* O - array of values that are read */ char *nularray, /* O - array of flags: 1 if null pixel; else 0 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Nularray will be set = 1 if the corresponding array pixel is undefined, otherwise nularray will = 0. */ { unsigned char dummy = 0; ffgclb(fptr, colnum, firstrow, firstelem, nelem, 1, 2, dummy, array, nularray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgclb( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ long elemincre, /* I - pixel increment; e.g., 2 = every other */ int nultyp, /* I - null value handling code: */ /* 1: set undefined pixels = nulval */ /* 2: set nularray=1 for undefined pixels */ unsigned char nulval, /* I - value for null pixels if nultyp = 1 */ unsigned char *array, /* O - array of values that are read */ char *nularray, /* O - array of flags = 1 if nultyp = 2 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. The column number may refer to a real column in an ASCII or binary table, or it may refer be a virtual column in a 1 or more grouped FITS primary array or image extension. FITSIO treats a primary array as a binary table with 2 vector columns: the first column contains the group parameters (often with length = 0) and the second column contains the array of image pixels. Each row of the table represents a group in the case of multigroup FITS images. The output array of values will be converted from the datatype of the column and will be scaled by the FITS TSCALn and TZEROn values if necessary. */ { double scale, zero, power = 1., dtemp; int tcode, maxelem2, hdutype, xcode, decimals; long twidth, incre, ntodo; long ii, xwidth; int convert, nulcheck, readcheck = 0; LONGLONG repeat, startpos, elemnum, readptr, tnull; LONGLONG rowlen, rownum, remain, next, rowincre, maxelem; char tform[20]; char message[81]; char snull[20]; /* the FITS null value if reading from ASCII table */ double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */ void *buffer; union u_tag { char charval; unsigned char ucharval; } u; if (*status > 0 || nelem == 0) /* inherit input status value if > 0 */ return(*status); buffer = cbuff; if (anynul) *anynul = 0; if (nultyp == 2) memset(nularray, 0, (size_t) nelem); /* initialize nullarray */ /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if (elemincre < 0) readcheck = -1; /* don't do range checking in this case */ ffgcprll( fptr, colnum, firstrow, firstelem, nelem, readcheck, &scale, &zero, tform, &twidth, &tcode, &maxelem2, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status); maxelem = maxelem2; /* special case */ if (tcode == TLOGICAL && elemincre == 1) { u.ucharval = nulval; ffgcll(fptr, colnum, firstrow, firstelem, nelem, nultyp, u.charval, (char *) array, nularray, anynul, status); return(*status); } if (strchr(tform,'A') != NULL) { if (*status == BAD_ELEM_NUM) { /* ignore this error message */ *status = 0; ffcmsg(); /* clear error stack */ } /* interpret a 'A' ASCII column as a 'B' byte column ('8A' == '8B') */ /* This is an undocumented 'feature' in CFITSIO */ /* we have to reset some of the values returned by ffgcpr */ tcode = TBYTE; incre = 1; /* each element is 1 byte wide */ repeat = twidth; /* total no. of chars in the col */ twidth = 1; /* width of each element */ scale = 1.0; /* no scaling */ zero = 0.0; tnull = NULL_UNDEFINED; /* don't test for nulls */ maxelem = DBUFFSIZE; } if (*status > 0) return(*status); incre *= elemincre; /* multiply incre to just get every nth pixel */ if (tcode == TSTRING && hdutype == ASCII_TBL) /* setup for ASCII tables */ { /* get the number of implied decimal places if no explicit decmal point */ ffasfm(tform, &xcode, &xwidth, &decimals, status); for(ii = 0; ii < decimals; ii++) power *= 10.; } /*------------------------------------------------------------------*/ /* Decide whether to check for null values in the input FITS file: */ /*------------------------------------------------------------------*/ nulcheck = nultyp; /* by default, check for null values in the FITS file */ if (nultyp == 1 && nulval == 0) nulcheck = 0; /* calling routine does not want to check for nulls */ else if (tcode%10 == 1 && /* if reading an integer column, and */ tnull == NULL_UNDEFINED) /* if a null value is not defined, */ nulcheck = 0; /* then do not check for null values. */ else if (tcode == TSHORT && (tnull > SHRT_MAX || tnull < SHRT_MIN) ) nulcheck = 0; /* Impossible null value */ else if (tcode == TBYTE && (tnull > 255 || tnull < 0) ) nulcheck = 0; /* Impossible null value */ else if (tcode == TSTRING && snull[0] == ASCII_NULL_UNDEFINED) nulcheck = 0; /*----------------------------------------------------------------------*/ /* If FITS column and output data array have same datatype, then we do */ /* not need to use a temporary buffer to store intermediate datatype. */ /*----------------------------------------------------------------------*/ convert = 1; if (tcode == TBYTE) /* Special Case: */ { /* no type convertion required, so read */ /* data directly into output buffer. */ if (nelem < (LONGLONG)INT32_MAX) { maxelem = nelem; } else { maxelem = INT32_MAX; } if (nulcheck == 0 && scale == 1. && zero == 0.) convert = 0; /* no need to scale data or find nulls */ } /*---------------------------------------------------------------------*/ /* Now read the pixels from the FITS column. If the column does not */ /* have the same datatype as the output array, then we have to read */ /* the raw values into a temporary buffer (of limited size). In */ /* the case of a vector colum read only 1 vector of values at a time */ /* then skip to the next row if more values need to be read. */ /* After reading the raw values, then call the fffXXYY routine to (1) */ /* test for undefined values, (2) convert the datatype if necessary, */ /* and (3) scale the values by the FITS TSCALn and TZEROn linear */ /* scaling parameters. */ /*---------------------------------------------------------------------*/ remain = nelem; /* remaining number of values to read */ next = 0; /* next element in array to be read */ rownum = 0; /* row number, relative to firstrow */ while (remain) { /* limit the number of pixels to read at one time to the number that will fit in the buffer or to the number of pixels that remain in the current vector, which ever is smaller. */ ntodo = (long) minvalue(remain, maxelem); if (elemincre >= 0) { ntodo = (long) minvalue(ntodo, ((repeat - elemnum - 1)/elemincre +1)); } else { ntodo = (long) minvalue(ntodo, (elemnum/(-elemincre) +1)); } readptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * (incre / elemincre)); switch (tcode) { case (TBYTE): ffgi1b(fptr, readptr, ntodo, incre, &array[next], status); if (convert) fffi1i1(&array[next], ntodo, scale, zero, nulcheck, (unsigned char) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TSHORT): ffgi2b(fptr, readptr, ntodo, incre, (short *) buffer, status); fffi2i1((short *) buffer, ntodo, scale, zero, nulcheck, (short) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TLONG): ffgi4b(fptr, readptr, ntodo, incre, (INT32BIT *) buffer, status); fffi4i1((INT32BIT *) buffer, ntodo, scale, zero, nulcheck, (INT32BIT) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TLONGLONG): ffgi8b(fptr, readptr, ntodo, incre, (long *) buffer, status); fffi8i1( (LONGLONG *) buffer, ntodo, scale, zero, nulcheck, tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TFLOAT): ffgr4b(fptr, readptr, ntodo, incre, (float *) buffer, status); fffr4i1((float *) buffer, ntodo, scale, zero, nulcheck, nulval, &nularray[next], anynul, &array[next], status); break; case (TDOUBLE): ffgr8b(fptr, readptr, ntodo, incre, (double *) buffer, status); fffr8i1((double *) buffer, ntodo, scale, zero, nulcheck, nulval, &nularray[next], anynul, &array[next], status); break; case (TSTRING): ffmbyt(fptr, readptr, REPORT_EOF, status); if (incre == twidth) /* contiguous bytes */ ffgbyt(fptr, ntodo * twidth, buffer, status); else ffgbytoff(fptr, twidth, ntodo, incre - twidth, buffer, status); /* interpret the string as an ASCII formated number */ fffstri1((char *) buffer, ntodo, scale, zero, twidth, power, nulcheck, snull, nulval, &nularray[next], anynul, &array[next], status); break; default: /* error trap for invalid column format */ sprintf(message, "Cannot read bytes from column %d which has format %s", colnum, tform); ffpmsg(message); if (hdutype == ASCII_TBL) return(*status = BAD_ATABLE_FORMAT); else return(*status = BAD_BTABLE_FORMAT); } /* End of switch block */ /*-------------------------*/ /* Check for fatal error */ /*-------------------------*/ if (*status > 0) /* test for error during previous read operation */ { dtemp = (double) next; if (hdutype > 0) sprintf(message, "Error reading elements %.0f thru %.0f from column %d (ffgclb).", dtemp+1., dtemp+ntodo, colnum); else sprintf(message, "Error reading elements %.0f thru %.0f from image (ffgclb).", dtemp+1., dtemp+ntodo); ffpmsg(message); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain -= ntodo; if (remain) { next += ntodo; elemnum = elemnum + (ntodo * elemincre); if (elemnum >= repeat) /* completed a row; start on later row */ { rowincre = elemnum / repeat; rownum += rowincre; elemnum = elemnum - (rowincre * repeat); } else if (elemnum < 0) /* completed a row; start on a previous row */ { rowincre = (-elemnum - 1) / repeat + 1; rownum -= rowincre; elemnum = (rowincre * repeat) + elemnum; } } } /* End of main while Loop */ /*--------------------------------*/ /* check for numerical overflow */ /*--------------------------------*/ if (*status == OVERFLOW_ERR) { ffpmsg( "Numerical overflow during type conversion while reading FITS data."); *status = NUM_OVERFLOW; } return(*status); } /*--------------------------------------------------------------------------*/ int ffgextn( fitsfile *fptr, /* I - FITS file pointer */ LONGLONG offset, /* I - byte offset from start of extension data */ LONGLONG nelem, /* I - number of elements to read */ void *buffer, /* I - stream of bytes to read */ int *status) /* IO - error status */ /* Read a stream of bytes from the current FITS HDU. This primative routine is mainly for reading non-standard "conforming" extensions and should not be used for standard IMAGE, TABLE or BINTABLE extensions. */ { if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); /* rescan header if data structure is undefined */ else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) return(*status); /* move to write position */ ffmbyt(fptr, (fptr->Fptr)->datastart+ offset, IGNORE_EOF, status); /* read the buffer */ ffgbyt(fptr, nelem, buffer, status); return(*status); } /*--------------------------------------------------------------------------*/ int fffi1i1(unsigned char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ unsigned char tnull, /* I - value of FITS TNULLn keyword if any */ unsigned char nullval,/* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ unsigned char *output,/* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { /* this routine is normally not called in this case */ memcpy(output, input, ntodo ); } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi2i1(short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ short tnull, /* I - value of FITS TNULLn keyword if any */ unsigned char nullval,/* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ unsigned char *output,/* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < 0) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > UCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { if (input[ii] < 0) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > UCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi4i1(INT32BIT *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ INT32BIT tnull, /* I - value of FITS TNULLn keyword if any */ unsigned char nullval,/* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ unsigned char *output,/* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < 0) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > UCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { if (input[ii] < 0) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > UCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi8i1(LONGLONG *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ LONGLONG tnull, /* I - value of FITS TNULLn keyword if any */ unsigned char nullval,/* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ unsigned char *output,/* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < 0) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > UCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { if (input[ii] < 0) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > UCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffr4i1(float *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ unsigned char nullval,/* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ unsigned char *output,/* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to NaN. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; short *sptr, iret; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) dvalue; } } } else /* must check for null values */ { sptr = (short *) input; #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS sptr++; /* point to MSBs */ #endif if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++, sptr += 2) { /* use redundant boolean logic in following statement */ /* to suppress irritating Borland compiler warning message */ if (0 != (iret = fnan(*sptr) ) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ output[ii] = 0; } else { if (input[ii] < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++, sptr += 2) { if (0 != (iret = fnan(*sptr) ) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ { if (zero < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (zero > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) zero; } } else { dvalue = input[ii] * scale + zero; if (dvalue < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffr8i1(double *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ unsigned char nullval,/* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ unsigned char *output,/* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to NaN. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; short *sptr, iret; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) dvalue; } } } else /* must check for null values */ { sptr = (short *) input; #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS sptr += 3; /* point to MSBs */ #endif if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++, sptr += 4) { if (0 != (iret = dnan(*sptr)) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ output[ii] = 0; } else { if (input[ii] < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++, sptr += 4) { if (0 != (iret = dnan(*sptr)) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ { if (zero < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (zero > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) zero; } } else { dvalue = input[ii] * scale + zero; if (dvalue < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffstri1(char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ long twidth, /* I - width of each substring of chars */ double implipower, /* I - power of 10 of implied decimal */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ char *snull, /* I - value of FITS null string, if any */ unsigned char nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ unsigned char *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to snull. If nullcheck= 0, then no special checking for nulls is performed. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { int nullen; long ii; double dvalue; char *cstring, message[81]; char *cptr, *tpos; char tempstore, chrzero = '0'; double val, power; int exponent, sign, esign, decpt; nullen = strlen(snull); cptr = input; /* pointer to start of input string */ for (ii = 0; ii < ntodo; ii++) { cstring = cptr; /* temporarily insert a null terminator at end of the string */ tpos = cptr + twidth; tempstore = *tpos; *tpos = 0; /* check if null value is defined, and if the */ /* column string is identical to the null string */ if (snull[0] != ASCII_NULL_UNDEFINED && !strncmp(snull, cptr, nullen) ) { if (nullcheck) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } cptr += twidth; } else { /* value is not the null value, so decode it */ /* remove any embedded blank characters from the string */ decpt = 0; sign = 1; val = 0.; power = 1.; exponent = 0; esign = 1; while (*cptr == ' ') /* skip leading blanks */ cptr++; if (*cptr == '-' || *cptr == '+') /* check for leading sign */ { if (*cptr == '-') sign = -1; cptr++; while (*cptr == ' ') /* skip blanks between sign and value */ cptr++; } while (*cptr >= '0' && *cptr <= '9') { val = val * 10. + *cptr - chrzero; /* accumulate the value */ cptr++; while (*cptr == ' ') /* skip embedded blanks in the value */ cptr++; } if (*cptr == '.' || *cptr == ',') /* check for decimal point */ { decpt = 1; cptr++; while (*cptr == ' ') /* skip any blanks */ cptr++; while (*cptr >= '0' && *cptr <= '9') { val = val * 10. + *cptr - chrzero; /* accumulate the value */ power = power * 10.; cptr++; while (*cptr == ' ') /* skip embedded blanks in the value */ cptr++; } } if (*cptr == 'E' || *cptr == 'D') /* check for exponent */ { cptr++; while (*cptr == ' ') /* skip blanks */ cptr++; if (*cptr == '-' || *cptr == '+') /* check for exponent sign */ { if (*cptr == '-') esign = -1; cptr++; while (*cptr == ' ') /* skip blanks between sign and exp */ cptr++; } while (*cptr >= '0' && *cptr <= '9') { exponent = exponent * 10 + *cptr - chrzero; /* accumulate exp */ cptr++; while (*cptr == ' ') /* skip embedded blanks */ cptr++; } } if (*cptr != 0) /* should end up at the null terminator */ { sprintf(message, "Cannot read number from ASCII table"); ffpmsg(message); sprintf(message, "Column field = %s.", cstring); ffpmsg(message); /* restore the char that was overwritten by the null */ *tpos = tempstore; return(*status = BAD_C2D); } if (!decpt) /* if no explicit decimal, use implied */ power = implipower; dvalue = (sign * val / power) * pow(10., (double) (esign * exponent)); dvalue = dvalue * scale + zero; /* apply the scaling */ if (dvalue < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) dvalue; } /* restore the char that was overwritten by the null */ *tpos = tempstore; } return(*status); } healpy-1.8.1/cfitsio/getcoll.c0000654000175000017530000005514112272000775016660 0ustar zoncaplanck00000000000000/* This file, getcoll.c, contains routines that read data elements from */ /* a FITS image or table, with logical datatype. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffgcvl( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ char nulval, /* I - value for null pixels */ char *array, /* O - array of values */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of logical values from a column in the current FITS HDU. Any undefined pixels will be set equal to the value of 'nulval' unless nulval = 0 in which case no checks for undefined pixels will be made. */ { char cdummy; ffgcll( fptr, colnum, firstrow, firstelem, nelem, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcl( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ char *array, /* O - array of values */ int *status) /* IO - error status */ /* !!!! THIS ROUTINE IS DEPRECATED AND SHOULD NOT BE USED !!!!!! !!!! USE ffgcvl INSTEAD !!!!!! Read an array of logical values from a column in the current FITS HDU. No checking for null values will be performed. */ { char nulval = 0; int anynul; ffgcvl( fptr, colnum, firstrow, firstelem, nelem, nulval, array, &anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcfl( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ char *array, /* O - array of values */ char *nularray, /* O - array of flags = 1 if nultyp = 2 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of logical values from a column in the current FITS HDU. */ { char nulval = 0; ffgcll( fptr, colnum, firstrow, firstelem, nelem, 2, nulval, array, nularray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcll( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ int nultyp, /* I - null value handling code: */ /* 1: set undefined pixels = nulval */ /* 2: set nularray=1 for undefined pixels */ char nulval, /* I - value for null pixels if nultyp = 1 */ char *array, /* O - array of values */ char *nularray, /* O - array of flags = 1 if nultyp = 2 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of logical values from a column in the current FITS HDU. */ { double dtemp; int tcode, maxelem, hdutype, ii, nulcheck; long twidth, incre; long ntodo; LONGLONG repeat, startpos, elemnum, readptr, tnull, rowlen, rownum, remain, next; double scale, zero; char tform[20]; char message[FLEN_ERRMSG]; char snull[20]; /* the FITS null value */ unsigned char buffer[DBUFFSIZE], *buffptr; if (*status > 0 || nelem == 0) /* inherit input status value if > 0 */ return(*status); if (anynul) *anynul = 0; if (nultyp == 2) memset(nularray, 0, (size_t) nelem); /* initialize nullarray */ /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if (ffgcprll( fptr, colnum, firstrow, firstelem, nelem, 0, &scale, &zero, tform, &twidth, &tcode, &maxelem, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0) return(*status); if (tcode != TLOGICAL) return(*status = NOT_LOGICAL_COL); /*------------------------------------------------------------------*/ /* Decide whether to check for null values in the input FITS file: */ /*------------------------------------------------------------------*/ nulcheck = nultyp; /* by default, check for null values in the FITS file */ if (nultyp == 1 && nulval == 0) nulcheck = 0; /* calling routine does not want to check for nulls */ /*---------------------------------------------------------------------*/ /* Now read the logical values from the FITS column. */ /*---------------------------------------------------------------------*/ remain = nelem; /* remaining number of values to read */ next = 0; /* next element in array to be read */ rownum = 0; /* row number, relative to firstrow */ ntodo = (long) remain; /* max number of elements to read at one time */ while (ntodo) { /* limit the number of pixels to read at one time to the number that remain in the current vector. */ ntodo = (long) minvalue(ntodo, maxelem); ntodo = (long) minvalue(ntodo, (repeat - elemnum)); readptr = startpos + (rowlen * rownum) + (elemnum * incre); ffgi1b(fptr, readptr, ntodo, incre, buffer, status); /* convert from T or F to 1 or 0 */ buffptr = buffer; for (ii = 0; ii < ntodo; ii++, next++, buffptr++) { if (*buffptr == 'T') array[next] = 1; else if (*buffptr =='F') array[next] = 0; else if (*buffptr == 0) { array[next] = nulval; /* set null values to input nulval */ if (anynul) *anynul = 1; if (nulcheck == 2) { nularray[next] = 1; /* set null flags */ } } else /* some other illegal character; return the char value */ { if (*buffptr == 1) { /* this is an unfortunate case where the illegal value is the same as what we set True values to, so set the value to the character '1' instead, which has ASCII value 49. */ array[next] = 49; } else { array[next] = (char) *buffptr; } } } if (*status > 0) /* test for error during previous read operation */ { dtemp = (double) next; sprintf(message, "Error reading elements %.0f thruough %.0f of logical array (ffgcl).", dtemp+1., dtemp + ntodo); ffpmsg(message); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain -= ntodo; if (remain) { elemnum += ntodo; if (elemnum == repeat) /* completed a row; start on later row */ { elemnum = 0; rownum++; } } ntodo = (long) remain; /* this is the maximum number to do in next loop */ } /* End of main while Loop */ return(*status); } /*--------------------------------------------------------------------------*/ int ffgcx( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG frow, /* I - first row to write (1 = 1st row) */ LONGLONG fbit, /* I - first bit to write (1 = 1st) */ LONGLONG nbit, /* I - number of bits to write */ char *larray, /* O - array of logicals corresponding to bits */ int *status) /* IO - error status */ /* read an array of logical values from a specified bit or byte column of the binary table. larray is set = TRUE, if the corresponding bit = 1, otherwise it is set to FALSE. The binary table column being read from must have datatype 'B' or 'X'. */ { LONGLONG bstart; long offset, ndone, ii, repeat, bitloc, fbyte; LONGLONG rstart, estart; int tcode, descrp; unsigned char cbuff; static unsigned char onbit[8] = {128, 64, 32, 16, 8, 4, 2, 1}; tcolumn *colptr; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* check input parameters */ if (nbit < 1) return(*status); else if (frow < 1) return(*status = BAD_ROW_NUM); else if (fbit < 1) return(*status = BAD_ELEM_NUM); /* position to the correct HDU */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); /* rescan header if data structure is undefined */ else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) return(*status); fbyte = (long) ((fbit + 7) / 8); bitloc = (long) (fbit - 1 - ((fbit - 1) / 8 * 8)); ndone = 0; rstart = frow - 1; estart = fbyte - 1; colptr = (fptr->Fptr)->tableptr; /* point to first column */ colptr += (colnum - 1); /* offset to correct column structure */ tcode = colptr->tdatatype; if (abs(tcode) > TBYTE) return(*status = NOT_LOGICAL_COL); /* not correct datatype column */ if (tcode > 0) { descrp = FALSE; /* not a variable length descriptor column */ /* N.B: REPEAT is the number of bytes, not number of bits */ repeat = (long) colptr->trepeat; if (tcode == TBIT) repeat = (repeat + 7) / 8; /* convert from bits to bytes */ if (fbyte > repeat) return(*status = BAD_ELEM_NUM); /* calc the i/o pointer location to start of sequence of pixels */ bstart = (fptr->Fptr)->datastart + ((fptr->Fptr)->rowlength * rstart) + colptr->tbcol + estart; } else { descrp = TRUE; /* a variable length descriptor column */ /* only bit arrays (tform = 'X') are supported for variable */ /* length arrays. REPEAT is the number of BITS in the array. */ ffgdes(fptr, colnum, frow, &repeat, &offset, status); if (tcode == -TBIT) repeat = (repeat + 7) / 8; if ((fbit + nbit + 6) / 8 > repeat) return(*status = BAD_ELEM_NUM); /* calc the i/o pointer location to start of sequence of pixels */ bstart = (fptr->Fptr)->datastart + offset + (fptr->Fptr)->heapstart + estart; } /* move the i/o pointer to the start of the pixel sequence */ if (ffmbyt(fptr, bstart, REPORT_EOF, status) > 0) return(*status); /* read the next byte */ while (1) { if (ffgbyt(fptr, 1, &cbuff, status) > 0) return(*status); for (ii = bitloc; (ii < 8) && (ndone < nbit); ii++, ndone++) { if(cbuff & onbit[ii]) /* test if bit is set */ larray[ndone] = TRUE; else larray[ndone] = FALSE; } if (ndone == nbit) /* finished all the bits */ return(*status); /* not done, so get the next byte */ if (!descrp) { estart++; if (estart == repeat) { /* move the i/o pointer to the next row of pixels */ estart = 0; rstart = rstart + 1; bstart = (fptr->Fptr)->datastart + ((fptr->Fptr)->rowlength * rstart) + colptr->tbcol; ffmbyt(fptr, bstart, REPORT_EOF, status); } } bitloc = 0; } } /*--------------------------------------------------------------------------*/ int ffgcxui(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG nrows, /* I - no. of rows to read */ long input_first_bit, /* I - first bit to read (1 = 1st) */ int input_nbits, /* I - number of bits to read (<= 32) */ unsigned short *array, /* O - array of integer values */ int *status) /* IO - error status */ /* Read a consecutive string of bits from an 'X' or 'B' column and interprete them as an unsigned integer. The number of bits must be less than or equal to 16 or the total number of bits in the column, which ever is less. */ { int ii, firstbit, nbits, bytenum, startbit, numbits, endbit; int firstbyte, lastbyte, nbytes, rshift, lshift; unsigned short colbyte[5]; tcolumn *colptr; char message[81]; if (*status > 0 || nrows == 0) return(*status); /* check input parameters */ if (firstrow < 1) { sprintf(message, "Starting row number is less than 1: %ld (ffgcxui)", (long) firstrow); ffpmsg(message); return(*status = BAD_ROW_NUM); } else if (input_first_bit < 1) { sprintf(message, "Starting bit number is less than 1: %ld (ffgcxui)", input_first_bit); ffpmsg(message); return(*status = BAD_ELEM_NUM); } else if (input_nbits > 16) { sprintf(message, "Number of bits to read is > 16: %d (ffgcxui)", input_nbits); ffpmsg(message); return(*status = BAD_ELEM_NUM); } /* position to the correct HDU */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); /* rescan header if data structure is undefined */ else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) return(*status); if ((fptr->Fptr)->hdutype != BINARY_TBL) { ffpmsg("This is not a binary table extension (ffgcxui)"); return(*status = NOT_BTABLE); } if (colnum > (fptr->Fptr)->tfield) { sprintf(message, "Specified column number is out of range: %d (ffgcxui)", colnum); ffpmsg(message); sprintf(message, " There are %d columns in this table.", (fptr->Fptr)->tfield ); ffpmsg(message); return(*status = BAD_COL_NUM); } colptr = (fptr->Fptr)->tableptr; /* point to first column */ colptr += (colnum - 1); /* offset to correct column structure */ if (abs(colptr->tdatatype) > TBYTE) { ffpmsg("Can only read bits from X or B type columns. (ffgcxui)"); return(*status = NOT_LOGICAL_COL); /* not correct datatype column */ } firstbyte = (input_first_bit - 1 ) / 8 + 1; lastbyte = (input_first_bit + input_nbits - 2) / 8 + 1; nbytes = lastbyte - firstbyte + 1; if (colptr->tdatatype == TBIT && input_first_bit + input_nbits - 1 > (long) colptr->trepeat) { ffpmsg("Too many bits. Tried to read past width of column (ffgcxui)"); return(*status = BAD_ELEM_NUM); } else if (colptr->tdatatype == TBYTE && lastbyte > (long) colptr->trepeat) { ffpmsg("Too many bits. Tried to read past width of column (ffgcxui)"); return(*status = BAD_ELEM_NUM); } for (ii = 0; ii < nrows; ii++) { /* read the relevant bytes from the row */ if (ffgcvui(fptr, colnum, firstrow+ii, firstbyte, nbytes, 0, colbyte, NULL, status) > 0) { ffpmsg("Error reading bytes from column (ffgcxui)"); return(*status); } firstbit = (input_first_bit - 1) % 8; /* modulus operator */ nbits = input_nbits; array[ii] = 0; /* select and shift the bits from each byte into the output word */ while(nbits) { bytenum = firstbit / 8; startbit = firstbit % 8; numbits = minvalue(nbits, 8 - startbit); endbit = startbit + numbits - 1; rshift = 7 - endbit; lshift = nbits - numbits; array[ii] = ((colbyte[bytenum] >> rshift) << lshift) | array[ii]; nbits -= numbits; firstbit += numbits; } } return(*status); } /*--------------------------------------------------------------------------*/ int ffgcxuk(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG nrows, /* I - no. of rows to read */ long input_first_bit, /* I - first bit to read (1 = 1st) */ int input_nbits, /* I - number of bits to read (<= 32) */ unsigned int *array, /* O - array of integer values */ int *status) /* IO - error status */ /* Read a consecutive string of bits from an 'X' or 'B' column and interprete them as an unsigned integer. The number of bits must be less than or equal to 32 or the total number of bits in the column, which ever is less. */ { int ii, firstbit, nbits, bytenum, startbit, numbits, endbit; int firstbyte, lastbyte, nbytes, rshift, lshift; unsigned int colbyte[5]; tcolumn *colptr; char message[81]; if (*status > 0 || nrows == 0) return(*status); /* check input parameters */ if (firstrow < 1) { sprintf(message, "Starting row number is less than 1: %ld (ffgcxuk)", (long) firstrow); ffpmsg(message); return(*status = BAD_ROW_NUM); } else if (input_first_bit < 1) { sprintf(message, "Starting bit number is less than 1: %ld (ffgcxuk)", input_first_bit); ffpmsg(message); return(*status = BAD_ELEM_NUM); } else if (input_nbits > 32) { sprintf(message, "Number of bits to read is > 32: %d (ffgcxuk)", input_nbits); ffpmsg(message); return(*status = BAD_ELEM_NUM); } /* position to the correct HDU */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); /* rescan header if data structure is undefined */ else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) return(*status); if ((fptr->Fptr)->hdutype != BINARY_TBL) { ffpmsg("This is not a binary table extension (ffgcxuk)"); return(*status = NOT_BTABLE); } if (colnum > (fptr->Fptr)->tfield) { sprintf(message, "Specified column number is out of range: %d (ffgcxuk)", colnum); ffpmsg(message); sprintf(message, " There are %d columns in this table.", (fptr->Fptr)->tfield ); ffpmsg(message); return(*status = BAD_COL_NUM); } colptr = (fptr->Fptr)->tableptr; /* point to first column */ colptr += (colnum - 1); /* offset to correct column structure */ if (abs(colptr->tdatatype) > TBYTE) { ffpmsg("Can only read bits from X or B type columns. (ffgcxuk)"); return(*status = NOT_LOGICAL_COL); /* not correct datatype column */ } firstbyte = (input_first_bit - 1 ) / 8 + 1; lastbyte = (input_first_bit + input_nbits - 2) / 8 + 1; nbytes = lastbyte - firstbyte + 1; if (colptr->tdatatype == TBIT && input_first_bit + input_nbits - 1 > (long) colptr->trepeat) { ffpmsg("Too many bits. Tried to read past width of column (ffgcxuk)"); return(*status = BAD_ELEM_NUM); } else if (colptr->tdatatype == TBYTE && lastbyte > (long) colptr->trepeat) { ffpmsg("Too many bits. Tried to read past width of column (ffgcxuk)"); return(*status = BAD_ELEM_NUM); } for (ii = 0; ii < nrows; ii++) { /* read the relevant bytes from the row */ if (ffgcvuk(fptr, colnum, firstrow+ii, firstbyte, nbytes, 0, colbyte, NULL, status) > 0) { ffpmsg("Error reading bytes from column (ffgcxuk)"); return(*status); } firstbit = (input_first_bit - 1) % 8; /* modulus operator */ nbits = input_nbits; array[ii] = 0; /* select and shift the bits from each byte into the output word */ while(nbits) { bytenum = firstbit / 8; startbit = firstbit % 8; numbits = minvalue(nbits, 8 - startbit); endbit = startbit + numbits - 1; rshift = 7 - endbit; lshift = nbits - numbits; array[ii] = ((colbyte[bytenum] >> rshift) << lshift) | array[ii]; nbits -= numbits; firstbit += numbits; } } return(*status); } healpy-1.8.1/cfitsio/vmsieee.c0000654000175000017530000000730612272000775016664 0ustar zoncaplanck00000000000000#include #include unsigned long CVT$CONVERT_FLOAT(); /* IEEVPAKR -- Pack a native floating point vector into an IEEE one. */ void ieevpr (unsigned int *native, unsigned int *ieee, int *nelem) { unsigned long status; unsigned long options; unsigned int *unanval; int nanval = -1; int i,n; unanval = (unsigned int *) &nanval; options = CVT$M_BIG_ENDIAN; n = *nelem; status = CVT$_NORMAL; for (i = 0; i < n ; i++) { status = CVT$CONVERT_FLOAT (&native[i], CVT$K_VAX_F, &ieee[i], CVT$K_IEEE_S, options); if (status != CVT$_NORMAL) { ieee[i] = *unanval; } } } /* IEEVPAKD -- Pack a native double floating point vector into an IEEE one. */ void ieevpd (unsigned long *native, unsigned long *ieee, int *nelem) { unsigned long status; unsigned long options; unsigned long *unanval; long nanval = -1; int i,n; unanval = (unsigned long *) &nanval; options = CVT$M_BIG_ENDIAN; n = *nelem * 2; status = CVT$_NORMAL; for (i = 0; i < n ; i=i+2) { status = CVT$CONVERT_FLOAT (&native[i], CVT$K_VAX_D, &ieee[i], CVT$K_IEEE_T, options); if (status != CVT$_NORMAL) { ieee[i] = *unanval; ieee[i+1] = *unanval; } } } /* IEEVUPKR -- Unpack an ieee vector into native single floating point vector. */ void ieevur (unsigned int *ieee, unsigned int *native, int *nelem) { unsigned long status; unsigned long options; unsigned int *unanval; int nanval = -1; int j,n; unanval = (unsigned int *) &nanval; options = CVT$M_ERR_UNDERFLOW+CVT$M_BIG_ENDIAN; n = *nelem; status = CVT$_NORMAL; for (j = 0; j < n ; j++) { status = CVT$CONVERT_FLOAT (&ieee[j], CVT$K_IEEE_S, &native[j], CVT$K_VAX_F, options); if (status != CVT$_NORMAL) switch(status) { case CVT$_INVVAL: case CVT$_NEGINF: case CVT$_OVERFLOW: case CVT$_POSINF: native[j] = *unanval; break; default: native[j] = 0; } } } /* IEEVUPKD -- Unpack an ieee vector into native double floating point vector. */ void ieevud (unsigned long *ieee, unsigned long *native, int *nelem) { unsigned long status; unsigned long options; unsigned long *unanval; long nanval = -1; int j,n; unanval = (unsigned long *) &nanval; options = CVT$M_BIG_ENDIAN + CVT$M_ERR_UNDERFLOW; n = *nelem * 2; status = CVT$_NORMAL; for (j = 0; j < n ; j=j+2) { status = CVT$CONVERT_FLOAT (&ieee[j], CVT$K_IEEE_T, &native[j], CVT$K_VAX_D, options); if (status != CVT$_NORMAL) switch(status) { case CVT$_INVVAL: case CVT$_NEGINF: case CVT$_OVERFLOW: case CVT$_POSINF: native[j] = *unanval; native[j+1] = *unanval; break; default: native[j] = 0; native[j+1] = 0; } } } healpy-1.8.1/cfitsio/cookbook.f0000654000175000017530000007277312272000775017052 0ustar zoncaplanck00000000000000 program main C This is the FITSIO cookbook program that contains an annotated listing of C various computer programs that read and write files in FITS format C using the FITSIO subroutine interface. These examples are C working programs which users may adapt and modify for their own C purposes. This Cookbook serves as a companion to the FITSIO User's C Guide that provides more complete documentation on all the C available FITSIO subroutines. C Call each subroutine in turn: call writeimage call writeascii call writebintable call copyhdu call selectrows call readheader call readimage call readtable print * print *,"All the fitsio cookbook routines ran successfully." end C ************************************************************************* subroutine writeimage C Create a FITS primary array containing a 2-D image integer status,unit,blocksize,bitpix,naxis,naxes(2) integer i,j,group,fpixel,nelements,array(300,200) character filename*80 logical simple,extend C The STATUS parameter must be initialized before using FITSIO. A C positive value of STATUS is returned whenever a serious error occurs. C FITSIO uses an `inherited status' convention, which means that if a C subroutine is called with a positive input value of STATUS, then the C subroutine will exit immediately, preserving the status value. For C simplicity, this program only checks the status value at the end of C the program, but it is usually better practice to check the status C value more frequently. status=0 C Name of the FITS file to be created: filename='ATESTFILEZ.FITS' C Delete the file if it already exists, so we can then recreate it. C The deletefile subroutine is listed at the end of this file. call deletefile(filename,status) C Get an unused Logical Unit Number to use to open the FITS file. C This routine is not required; programmers can choose any unused C unit number to open the file. call ftgiou(unit,status) C Create the new empty FITS file. The blocksize parameter is a C historical artifact and the value is ignored by FITSIO. blocksize=1 call ftinit(unit,filename,blocksize,status) C Initialize parameters about the FITS image. C BITPIX = 16 means that the image pixels will consist of 16-bit C integers. The size of the image is given by the NAXES values. C The EXTEND = TRUE parameter indicates that the FITS file C may contain extensions following the primary array. simple=.true. bitpix=16 naxis=2 naxes(1)=300 naxes(2)=200 extend=.true. C Write the required header keywords to the file call ftphpr(unit,simple,bitpix,naxis,naxes,0,1,extend,status) C Initialize the values in the image with a linear ramp function do j=1,naxes(2) do i=1,naxes(1) array(i,j)=i - 1 +j - 1 end do end do C Write the array to the FITS file. C The last letter of the subroutine name defines the datatype of the C array argument; in this case the 'J' indicates that the array has an C integer*4 datatype. ('I' = I*2, 'E' = Real*4, 'D' = Real*8). C The 2D array is treated as a single 1-D array with NAXIS1 * NAXIS2 C total number of pixels. GROUP is seldom used parameter that should C almost always be set = 1. group=1 fpixel=1 nelements=naxes(1)*naxes(2) call ftpprj(unit,group,fpixel,nelements,array,status) C Write another optional keyword to the header C The keyword record will look like this in the FITS file: C C EXPOSURE= 1500 / Total Exposure Time C call ftpkyj(unit,'EXPOSURE',1500,'Total Exposure Time',status) C The FITS file must always be closed before exiting the program. C Any unit numbers allocated with FTGIOU must be freed with FTFIOU. call ftclos(unit, status) call ftfiou(unit, status) C Check for any errors, and if so print out error messages. C The PRINTERROR subroutine is listed near the end of this file. if (status .gt. 0)call printerror(status) end C ************************************************************************* subroutine writeascii C Create an ASCII table containing 3 columns and 6 rows. For convenience, C the ASCII table extension is appended to the FITS image file created C previously by the WRITEIMAGE subroutine. integer status,unit,readwrite,blocksize,tfields,nrows,rowlen integer nspace,tbcol(3),diameter(6), colnum,frow,felem real density(6) character filename*40,extname*16 character*16 ttype(3),tform(3),tunit(3),name(6) data ttype/'Planet','Diameter','Density'/ data tform/'A8','I6','F4.2'/ data tunit/' ','km','g/cm'/ data name/'Mercury','Venus','Earth','Mars','Jupiter','Saturn'/ data diameter/4880,12112,12742,6800,143000,121000/ data density/5.1,5.3,5.52,3.94,1.33,0.69/ C The STATUS parameter must always be initialized. status=0 C Name of the FITS file to append the ASCII table to: filename='ATESTFILEZ.FITS' C Get an unused Logical Unit Number to use to open the FITS file. call ftgiou(unit,status) C Open the FITS file with write access. C (readwrite = 0 would open the file with readonly access). readwrite=1 call ftopen(unit,filename,readwrite,blocksize,status) C FTCRHD creates a new empty FITS extension following the current C extension and moves to it. In this case, FITSIO was initially C positioned on the primary array when the FITS file was first opened, so C FTCRHD appends an empty extension and moves to it. All future FITSIO C calls then operate on the new extension (which will be an ASCII C table). call ftcrhd(unit,status) C define parameters for the ASCII table (see the above data statements) tfields=3 nrows=6 extname='PLANETS_ASCII' C FTGABC is a convenient subroutine for calculating the total width of C the table and the starting position of each column in an ASCII table. C Any number of blank spaces (including zero) may be inserted between C each column of the table, as specified by the NSPACE parameter. nspace=1 call ftgabc(tfields,tform,nspace,rowlen,tbcol,status) C FTPHTB writes all the required header keywords which define the C structure of the ASCII table. NROWS and TFIELDS give the number of C rows and columns in the table, and the TTYPE, TBCOL, TFORM, and TUNIT C arrays give the column name, starting position, format, and units, C respectively of each column. The values of the ROWLEN and TBCOL parameters C were previously calculated by the FTGABC routine. call ftphtb(unit,rowlen,nrows,tfields,ttype,tbcol,tform,tunit, & extname,status) C Write names to the first column, diameters to 2nd col., and density to 3rd C FTPCLS writes the string values to the NAME column (column 1) of the C table. The FTPCLJ and FTPCLE routines write the diameter (integer) and C density (real) value to the 2nd and 3rd columns. The FITSIO routines C are column oriented, so it is usually easier to read or write data in a C table in a column by column order rather than row by row. frow=1 felem=1 colnum=1 call ftpcls(unit,colnum,frow,felem,nrows,name,status) colnum=2 call ftpclj(unit,colnum,frow,felem,nrows,diameter,status) colnum=3 call ftpcle(unit,colnum,frow,felem,nrows,density,status) C The FITS file must always be closed before exiting the program. C Any unit numbers allocated with FTGIOU must be freed with FTFIOU. call ftclos(unit, status) call ftfiou(unit, status) C Check for any error, and if so print out error messages. C The PRINTERROR subroutine is listed near the end of this file. if (status .gt. 0)call printerror(status) end C ************************************************************************* subroutine writebintable C This routine creates a FITS binary table, or BINTABLE, containing C 3 columns and 6 rows. This routine is nearly identical to the C previous WRITEASCII routine, except that the call to FTGABC is not C needed, and FTPHBN is called rather than FTPHTB to write the C required header keywords. integer status,unit,readwrite,blocksize,hdutype,tfields,nrows integer varidat,diameter(6), colnum,frow,felem real density(6) character filename*40,extname*16 character*16 ttype(3),tform(3),tunit(3),name(6) data ttype/'Planet','Diameter','Density'/ data tform/'8A','1J','1E'/ data tunit/' ','km','g/cm'/ data name/'Mercury','Venus','Earth','Mars','Jupiter','Saturn'/ data diameter/4880,12112,12742,6800,143000,121000/ data density/5.1,5.3,5.52,3.94,1.33,0.69/ C The STATUS parameter must always be initialized. status=0 C Name of the FITS file to append the ASCII table to: filename='ATESTFILEZ.FITS' C Get an unused Logical Unit Number to use to open the FITS file. call ftgiou(unit,status) C Open the FITS file, with write access. readwrite=1 call ftopen(unit,filename,readwrite,blocksize,status) C Move to the last (2nd) HDU in the file (the ASCII table). call ftmahd(unit,2,hdutype,status) C Append/create a new empty HDU onto the end of the file and move to it. call ftcrhd(unit,status) C Define parameters for the binary table (see the above data statements) tfields=3 nrows=6 extname='PLANETS_BINARY' varidat=0 C FTPHBN writes all the required header keywords which define the C structure of the binary table. NROWS and TFIELDS gives the number of C rows and columns in the table, and the TTYPE, TFORM, and TUNIT arrays C give the column name, format, and units, respectively of each column. call ftphbn(unit,nrows,tfields,ttype,tform,tunit, & extname,varidat,status) C Write names to the first column, diameters to 2nd col., and density to 3rd C FTPCLS writes the string values to the NAME column (column 1) of the C table. The FTPCLJ and FTPCLE routines write the diameter (integer) and C density (real) value to the 2nd and 3rd columns. The FITSIO routines C are column oriented, so it is usually easier to read or write data in a C table in a column by column order rather than row by row. Note that C the identical subroutine calls are used to write to either ASCII or C binary FITS tables. frow=1 felem=1 colnum=1 call ftpcls(unit,colnum,frow,felem,nrows,name,status) colnum=2 call ftpclj(unit,colnum,frow,felem,nrows,diameter,status) colnum=3 call ftpcle(unit,colnum,frow,felem,nrows,density,status) C The FITS file must always be closed before exiting the program. C Any unit numbers allocated with FTGIOU must be freed with FTFIOU. call ftclos(unit, status) call ftfiou(unit, status) C Check for any error, and if so print out error messages. C The PRINTERROR subroutine is listed near the end of this file. if (status .gt. 0)call printerror(status) end C ************************************************************************* subroutine copyhdu C Copy the 1st and 3rd HDUs from the input file to a new FITS file integer status,inunit,outunit,readwrite,blocksize,morekeys,hdutype character infilename*40,outfilename*40 C The STATUS parameter must always be initialized. status=0 C Name of the FITS files: infilename='ATESTFILEZ.FITS' outfilename='BTESTFILEZ.FITS' C Delete the file if it already exists, so we can then recreate it C The deletefile subroutine is listed at the end of this file. call deletefile(outfilename,status) C Get unused Logical Unit Numbers to use to open the FITS files. call ftgiou(inunit,status) call ftgiou(outunit,status) C Open the input FITS file, with readonly access readwrite=0 call ftopen(inunit,infilename,readwrite,blocksize,status) C Create the new empty FITS file (value of blocksize is ignored) blocksize=1 call ftinit(outunit,outfilename,blocksize,status) C FTCOPY copies the current HDU from the input FITS file to the output C file. The MOREKEY parameter allows one to reserve space for additional C header keywords when the HDU is created. FITSIO will automatically C insert more header space if required, so programmers do not have to C reserve space ahead of time, although it is more efficient to do so if C it is known that more keywords will be appended to the header. morekeys=0 call ftcopy(inunit,outunit,morekeys,status) C Append/create a new empty extension on the end of the output file call ftcrhd(outunit,status) C Skip to the 3rd extension in the input file which in this case C is the binary table created by the previous WRITEBINARY routine. call ftmahd(inunit,3,hdutype,status) C FTCOPY now copies the binary table from the input FITS file C to the output file. call ftcopy(inunit,outunit,morekeys,status) C The FITS files must always be closed before exiting the program. C Any unit numbers allocated with FTGIOU must be freed with FTFIOU. C Giving -1 for the value of the first argument causes all previously C allocated unit numbers to be released. call ftclos(inunit, status) call ftclos(outunit, status) call ftfiou(-1, status) C Check for any error, and if so print out error messages. C The PRINTERROR subroutine is listed near the end of this file. if (status .gt. 0)call printerror(status) end C ************************************************************************* subroutine selectrows C This routine copies selected rows from an input table into a new output C FITS table. In this example all the rows in the input table that have C a value of the DENSITY column less that 3.0 are copied to the output C table. This program illustrates several generally useful techniques, C including: C how to locate the end of a FITS file C how to create a table when the total number of rows in the table C is not known until the table is completed C how to efficiently copy entire rows from one table to another. integer status,inunit,outunit,readwrite,blocksize,hdutype integer nkeys,nspace,naxes(2),nfound,colnum,frow,felem integer noutrows,irow,temp(100),i real nullval,density(6) character infilename*40,outfilename*40,record*80 logical exact,anynulls C The STATUS parameter must always be initialized. status=0 C Names of the FITS files: infilename='ATESTFILEZ.FITS' outfilename='BTESTFILEZ.FITS' C Get unused Logical Unit Numbers to use to open the FITS files. call ftgiou(inunit,status) call ftgiou(outunit,status) C The input FITS file is opened with READONLY access, and the output C FITS file is opened with WRITE access. readwrite=0 call ftopen(inunit,infilename,readwrite,blocksize,status) readwrite=1 call ftopen(outunit,outfilename,readwrite,blocksize,status) C move to the 3rd HDU in the input file (a binary table in this case) call ftmahd(inunit,3,hdutype,status) C This do-loop illustrates how to move to the last extension in any FITS C file. The call to FTMRHD moves one extension at a time through the C FITS file until an `End-of-file' status value (= 107) is returned. do while (status .eq. 0) call ftmrhd(outunit,1,hdutype,status) end do C After locating the end of the FITS file, it is necessary to reset the C status value to zero and also clear the internal error message stack C in FITSIO. The previous `End-of-file' error will have produced C an unimportant message on the error stack which can be cleared with C the call to the FTCMSG routine (which has no arguments). if (status .eq. 107)then status=0 call ftcmsg end if C Create a new empty extension in the output file. call ftcrhd(outunit,status) C Find the number of keywords in the input table header. call ftghsp(inunit,nkeys,nspace,status) C This do-loop of calls to FTGREC and FTPREC copies all the keywords from C the input to the output FITS file. Notice that the specified number C of rows in the output table, as given by the NAXIS2 keyword, will be C incorrect. This value will be modified later after it is known how many C rows will be in the table, so it does not matter how many rows are specified C initially. do i=1,nkeys call ftgrec(inunit,i,record,status) call ftprec(outunit,record,status) end do C FTGKNJ is used to get the value of the NAXIS1 and NAXIS2 keywords, C which define the width of the table in bytes, and the number of C rows in the table. call ftgknj(inunit,'NAXIS',1,2,naxes,nfound,status) C FTGCNO gets the column number of the `DENSITY' column; the column C number is needed when reading the data in the column. The EXACT C parameter determines whether or not the match to the column names C will be case sensitive. exact=.false. call ftgcno(inunit,exact,'DENSITY',colnum,status) C FTGCVE reads all 6 rows of data in the `DENSITY' column. The number C of rows in the table is given by NAXES(2). Any null values in the C table will be returned with the corresponding value set to -99 C (= the value of NULLVAL). The ANYNULLS parameter will be set to TRUE C if any null values were found while reading the data values in the table. frow=1 felem=1 nullval=-99. call ftgcve(inunit,colnum,frow,felem,naxes(2),nullval, & density,anynulls,status) C If the density is less than 3.0, copy the row to the output table. C FTGTBB and FTPTBB are low-level routines to read and write, respectively, C a specified number of bytes in the table, starting at the specified C row number and beginning byte within the row. These routines do C not do any interpretation of the bytes, and simply pass them to or C from the FITS file without any modification. This is a faster C way of transferring large chunks of data from one FITS file to another, C than reading and then writing each column of data individually. C In this case an entire row of bytes (the row length is specified C by the naxes(1) parameter) is transferred. The datatype of the C buffer array (TEMP in this case) is immaterial so long as it is C declared large enough to hold the required number of bytes. noutrows=0 do irow=1,naxes(2) if (density(irow) .lt. 3.0)then noutrows=noutrows+1 call ftgtbb(inunit,irow,1,naxes(1),temp,status) call ftptbb(outunit,noutrows,1,naxes(1),temp,status) end if end do C Update the NAXIS2 keyword with the correct no. of rows in the output file. C After all the rows have been written to the output table, the C FTMKYJ routine is used to overwrite the NAXIS2 keyword value with C the correct number of rows. Specifying `\&' for the comment string C tells FITSIO to keep the current comment string in the keyword and C only modify the value. Because the total number of rows in the table C was unknown when the table was first created, any value (including 0) C could have been used for the initial NAXIS2 keyword value. call ftmkyj(outunit,'NAXIS2',noutrows,'&',status) C The FITS files must always be closed before exiting the program. C Any unit numbers allocated with FTGIOU must be freed with FTFIOU. call ftclos(inunit, status) call ftclos(outunit, status) call ftfiou(-1, status) C Check for any error, and if so print out error messages. C The PRINTERROR subroutine is listed near the end of this file. if (status .gt. 0)call printerror(status) end C ************************************************************************* subroutine readheader C Print out all the header keywords in all extensions of a FITS file integer status,unit,readwrite,blocksize,nkeys,nspace,hdutype,i,j character filename*80,record*80 C The STATUS parameter must always be initialized. status=0 C Get an unused Logical Unit Number to use to open the FITS file. call ftgiou(unit,status) C name of FITS file filename='ATESTFILEZ.FITS' C open the FITS file, with read-only access. The returned BLOCKSIZE C parameter is obsolete and should be ignored. readwrite=0 call ftopen(unit,filename,readwrite,blocksize,status) j = 0 100 continue j = j + 1 print *,'Header listing for HDU', j C The FTGHSP subroutine returns the number of existing keywords in the C current header data unit (CHDU), not counting the required END keyword, call ftghsp(unit,nkeys,nspace,status) C Read each 80-character keyword record, and print it out. do i = 1, nkeys call ftgrec(unit,i,record,status) print *,record end do C Print out an END record, and a blank line to mark the end of the header. if (status .eq. 0)then print *,'END' print *,' ' end if C Try moving to the next extension in the FITS file, if it exists. C The FTMRHD subroutine attempts to move to the next HDU, as specified by C the second parameter. This subroutine moves by a relative number of C HDUs from the current HDU. The related FTMAHD routine may be used to C move to an absolute HDU number in the FITS file. If the end-of-file is C encountered when trying to move to the specified extension, then a C status = 107 is returned. call ftmrhd(unit,1,hdutype,status) if (status .eq. 0)then C success, so jump back and print out keywords in this extension go to 100 else if (status .eq. 107)then C hit end of file, so quit status=0 end if C The FITS file must always be closed before exiting the program. C Any unit numbers allocated with FTGIOU must be freed with FTFIOU. call ftclos(unit, status) call ftfiou(unit, status) C Check for any error, and if so print out error messages. C The PRINTERROR subroutine is listed near the end of this file. if (status .gt. 0)call printerror(status) end C ************************************************************************* subroutine readimage C Read a FITS image and determine the minimum and maximum pixel value. C Rather than reading the entire image in C at once (which could require a very large array), the image is read C in pieces, 100 pixels at a time. integer status,unit,readwrite,blocksize,naxes(2),nfound integer group,firstpix,nbuffer,npixels,i real datamin,datamax,nullval,buffer(100) logical anynull character filename*80 C The STATUS parameter must always be initialized. status=0 C Get an unused Logical Unit Number to use to open the FITS file. call ftgiou(unit,status) C Open the FITS file previously created by WRITEIMAGE filename='ATESTFILEZ.FITS' readwrite=0 call ftopen(unit,filename,readwrite,blocksize,status) C Determine the size of the image. call ftgknj(unit,'NAXIS',1,2,naxes,nfound,status) C Check that it found both NAXIS1 and NAXIS2 keywords. if (nfound .ne. 2)then print *,'READIMAGE failed to read the NAXISn keywords.' return end if C Initialize variables npixels=naxes(1)*naxes(2) group=1 firstpix=1 nullval=-999 datamin=1.0E30 datamax=-1.0E30 do while (npixels .gt. 0) C read up to 100 pixels at a time nbuffer=min(100,npixels) call ftgpve(unit,group,firstpix,nbuffer,nullval, & buffer,anynull,status) C find the min and max values do i=1,nbuffer datamin=min(datamin,buffer(i)) datamax=max(datamax,buffer(i)) end do C increment pointers and loop back to read the next group of pixels npixels=npixels-nbuffer firstpix=firstpix+nbuffer end do print * print *,'Min and max image pixels = ',datamin,datamax C The FITS file must always be closed before exiting the program. C Any unit numbers allocated with FTGIOU must be freed with FTFIOU. call ftclos(unit, status) call ftfiou(unit, status) C Check for any error, and if so print out error messages. C The PRINTERROR subroutine is listed near the end of this file. if (status .gt. 0)call printerror(status) end C ************************************************************************* subroutine readtable C Read and print data values from an ASCII or binary table C This example reads and prints out all the data in the ASCII and C the binary tables that were previously created by WRITEASCII and C WRITEBINTABLE. Note that the exact same FITSIO routines are C used to read both types of tables. integer status,unit,readwrite,blocksize,hdutype,ntable integer felem,nelems,nullj,diameter,nfound,irow,colnum real nulle,density character filename*40,nullstr*1,name*8,ttype(3)*10 logical anynull C The STATUS parameter must always be initialized. status=0 C Get an unused Logical Unit Number to use to open the FITS file. call ftgiou(unit,status) C Open the FITS file previously created by WRITEIMAGE filename='ATESTFILEZ.FITS' readwrite=0 call ftopen(unit,filename,readwrite,blocksize,status) C Loop twice, first reading the ASCII table, then the binary table do ntable=2,3 C Move to the next extension call ftmahd(unit,ntable,hdutype,status) print *,' ' if (hdutype .eq. 1)then print *,'Reading ASCII table in HDU ',ntable else if (hdutype .eq. 2)then print *,'Reading binary table in HDU ',ntable end if C Read the TTYPEn keywords, which give the names of the columns call ftgkns(unit,'TTYPE',1,3,ttype,nfound,status) write(*,2000)ttype 2000 format(2x,"Row ",3a10) C Read the data, one row at a time, and print them out felem=1 nelems=1 nullstr=' ' nullj=0 nulle=0. do irow=1,6 C FTGCVS reads the NAMES from the first column of the table. colnum=1 call ftgcvs(unit,colnum,irow,felem,nelems,nullstr,name, & anynull,status) C FTGCVJ reads the DIAMETER values from the second column. colnum=2 call ftgcvj(unit,colnum,irow,felem,nelems,nullj,diameter, & anynull,status) C FTGCVE reads the DENSITY values from the third column. colnum=3 call ftgcve(unit,colnum,irow,felem,nelems,nulle,density, & anynull,status) write(*,2001)irow,name,diameter,density 2001 format(i5,a10,i10,f10.2) end do end do C The FITS file must always be closed before exiting the program. C Any unit numbers allocated with FTGIOU must be freed with FTFIOU. call ftclos(unit, status) call ftfiou(unit, status) C Check for any error, and if so print out error messages. C The PRINTERROR subroutine is listed near the end of this file. if (status .gt. 0)call printerror(status) end C ************************************************************************* subroutine printerror(status) C This subroutine prints out the descriptive text corresponding to the C error status value and prints out the contents of the internal C error message stack generated by FITSIO whenever an error occurs. integer status character errtext*30,errmessage*80 C Check if status is OK (no error); if so, simply return if (status .le. 0)return C The FTGERR subroutine returns a descriptive 30-character text string that C corresponds to the integer error status number. A complete list of all C the error numbers can be found in the back of the FITSIO User's Guide. call ftgerr(status,errtext) print *,'FITSIO Error Status =',status,': ',errtext C FITSIO usually generates an internal stack of error messages whenever C an error occurs. These messages provide much more information on the C cause of the problem than can be provided by the single integer error C status value. The FTGMSG subroutine retrieves the oldest message from C the stack and shifts any remaining messages on the stack down one C position. FTGMSG is called repeatedly until a blank message is C returned, which indicates that the stack is empty. Each error message C may be up to 80 characters in length. Another subroutine, called C FTCMSG, is available to simply clear the whole error message stack in C cases where one is not interested in the contents. call ftgmsg(errmessage) do while (errmessage .ne. ' ') print *,errmessage call ftgmsg(errmessage) end do end C ************************************************************************* subroutine deletefile(filename,status) C A simple little routine to delete a FITS file integer status,unit,blocksize character*(*) filename C Simply return if status is greater than zero if (status .gt. 0)return C Get an unused Logical Unit Number to use to open the FITS file call ftgiou(unit,status) C Try to open the file, to see if it exists call ftopen(unit,filename,1,blocksize,status) if (status .eq. 0)then C file was opened; so now delete it call ftdelt(unit,status) else if (status .eq. 103)then C file doesn't exist, so just reset status to zero and clear errors status=0 call ftcmsg else C there was some other error opening the file; delete the file anyway status=0 call ftcmsg call ftdelt(unit,status) end if C Free the unit number for later reuse call ftfiou(unit, status) end healpy-1.8.1/cfitsio/Makefile.in0000654000175000017530000001252212272000775017124 0ustar zoncaplanck00000000000000# # Makefile for cfitsio library: # libcfits.a # # Oct-96 : original version by # # JDD/WDP # NASA GSFC # Oct 1996 # # 25-Jan-01 : removed conditional drvrsmem.c compilation because this # is now handled within the source file itself. # 09-Mar-98 : modified to conditionally compile drvrsmem.c. Also # changes to target all (deleted clean), added DEFS, LIBS, added # DEFS to .c.o, added SOURCES_SHMEM and MY_SHMEM, expanded getcol* # and putcol* in SOURCES, modified OBJECTS, mv changed to /bin/mv # (to bypass aliasing), cp changed to /bin/cp, add smem and # testprog targets. See also changes and comments in configure.in # CFITSIO version numbers: CFITSIO_MAJOR = @CFITSIO_MAJOR@ CFITSIO_MINOR = @CFITSIO_MINOR@ CFITSIO_SONAME = @CFITSIO_SONAME@ prefix = @prefix@ exec_prefix = @exec_prefix@ DESTDIR = CFITSIO_LIB = ${DESTDIR}@libdir@ CFITSIO_INCLUDE = ${DESTDIR}@includedir@ INSTALL_DIRS = @INSTALL_ROOT@ ${CFITSIO_INCLUDE} ${CFITSIO_LIB} ${CFITSIO_LIB}/pkgconfig SHELL = /bin/sh ARCHIVE = @ARCHIVE@ RANLIB = @RANLIB@ CC = @CC@ CFLAGS = @CFLAGS@ SSE_FLAGS = @SSE_FLAGS@ FC = @FC@ LDFLAGS = $(CFLAGS) DEFS = @DEFS@ LIBS = @LIBS@ FLEX = flex BISON = bison SHLIB_LD = @SHLIB_LD@ SHLIB_SUFFIX = @SHLIB_SUFFIX@ CFITSIO_SHLIB = @CFITSIO_SHLIB@ CFITSIO_SHLIB_SONAME = @CFITSIO_SHLIB_SONAME@ CORE_SOURCES = buffers.c cfileio.c checksum.c drvrfile.c drvrmem.c \ drvrnet.c drvrsmem.c drvrgsiftp.c editcol.c edithdu.c eval_l.c \ eval_y.c eval_f.c fitscore.c getcol.c getcolb.c getcold.c getcole.c \ getcoli.c getcolj.c getcolk.c getcoll.c getcols.c getcolsb.c \ getcoluk.c getcolui.c getcoluj.c getkey.c group.c grparser.c \ histo.c iraffits.c \ modkey.c putcol.c putcolb.c putcold.c putcole.c putcoli.c \ putcolj.c putcolk.c putcoluk.c putcoll.c putcols.c putcolsb.c \ putcolu.c putcolui.c putcoluj.c putkey.c region.c scalnull.c \ swapproc.c wcssub.c wcsutil.c imcompress.c quantize.c ricecomp.c \ pliocomp.c fits_hcompress.c fits_hdecompress.c ZLIB_SOURCES = zlib/adler32.c zlib/crc32.c zlib/deflate.c zlib/infback.c \ zlib/inffast.c zlib/inflate.c zlib/inftrees.c zlib/trees.c \ zlib/uncompr.c zlib/zcompress.c zlib/zuncompress.c zlib/zutil.c SOURCES = ${CORE_SOURCES} ${ZLIB_SOURCES} @F77_WRAPPERS@ OBJECTS = ${SOURCES:.c=.o} CORE_OBJECTS = ${CORE_SOURCES:.c=.o} ${ZLIB_SOURCES:.c=.o} FITSIO_SRC = f77_wrap1.c f77_wrap2.c f77_wrap3.c f77_wrap4.c # ============ description of all targets ============= # - <<-- ignore error code all: @if [ "x${FC}" = x ]; then \ ${MAKE} all-nofitsio; \ else \ ${MAKE} stand_alone; \ fi all-nofitsio: ${MAKE} stand_alone "FITSIO_SRC=" stand_alone: libcfitsio.a libcfitsio.a: ${OBJECTS} ${ARCHIVE} libcfitsio.a ${OBJECTS}; \ ${RANLIB} libcfitsio.a; shared: libcfitsio${SHLIB_SUFFIX} libcfitsio${SHLIB_SUFFIX}: ${OBJECTS} ${SHLIB_LD} ${LDFLAGS} -o ${CFITSIO_SHLIB} ${OBJECTS} -lm ${LIBS} @if [ "x${CFITSIO_SHLIB_SONAME}" != x ]; then \ ln -sf ${CFITSIO_SHLIB} ${CFITSIO_SHLIB_SONAME}; \ ln -sf ${CFITSIO_SHLIB_SONAME} $@; \ fi install: libcfitsio.a $(INSTALL_DIRS) /bin/cp -a libcfitsio* ${CFITSIO_LIB} /bin/cp fitsio.h fitsio2.h longnam.h drvrsmem.h ${CFITSIO_INCLUDE} /bin/cp cfitsio.pc ${CFITSIO_LIB}/pkgconfig .c.o: $(CC) -c -o ${ eval_l.c1 /bin/sed -e 's/yy/ff/g' -e 's/YY/FF/g' eval_l.c1 > eval_l.c /bin/rm -f eval_l.c1 $(BISON) -d -v -y eval.y /bin/sed -e 's/yy/ff/g' -e 's/YY/FF/g' y.tab.c > eval_y.c /bin/sed -e 's/yy/ff/g' -e 's/YY/FF/g' y.tab.h > eval_tab.h /bin/rm -f y.tab.c y.tab.h clean: - /bin/rm -f *.o zlib/*.o libcfitsio* fpack funpack \ smem testprog y.output so_locations distclean: clean - /bin/rm -f Makefile cfitsio.pc config.log config.status configure.lineno # Make target which outputs the list of the .o contained in the cfitsio lib # usefull to build a single big shared library containing Tcl/Tk and other # extensions. used for the Tcl Plugin. cfitsioLibObjs: @echo ${CORE_OBJECTS} cfitsioLibSrcs: @echo ${SOURCES} # This target actually builds the objects needed for the lib in the above # case objs: ${CORE_OBJECTS} $(INSTALL_DIRS): @if [ ! -d $@ ]; then mkdir -p $@; fi healpy-1.8.1/cfitsio/group.c0000654000175000017530000052437712272000775016377 0ustar zoncaplanck00000000000000/* This file, group.c, contains the grouping convention suport routines. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ /* */ /* The group.c module of CFITSIO was written by Donald G. Jennings of */ /* the INTEGRAL Science Data Centre (ISDC) under NASA contract task */ /* 66002J6. The above copyright laws apply. Copyright guidelines of The */ /* University of Geneva might also apply. */ /* The following routines are designed to create, read, and manipulate */ /* FITS Grouping Tables as defined in the FITS Grouping Convention paper */ /* by Jennings, Pence, Folk and Schlesinger. The development of the */ /* grouping structure was partially funded under the NASA AISRP Program. */ #include "fitsio2.h" #include "group.h" #include #include #include #if defined(WIN32) || defined(__WIN32__) #include /* defines the getcwd function on Windows PCs */ #endif #if defined(unix) || defined(__unix__) || defined(__unix) #include /* needed for getcwd prototype on unix machines */ #endif #define HEX_ESCAPE '%' /*--------------------------------------------------------------------------- Change record: D. Jennings, 18/06/98, version 1.0 of group module delivered to B. Pence for integration into CFITSIO 2.005 D. Jennings, 17/11/98, fixed bug in ffgtcpr(). Now use fits_find_nextkey() correctly and insert auxiliary keyword records directly before the TTYPE1 keyword in the copied group table. D. Jennings, 22/01/99, ffgmop() now looks for relative file paths when the MEMBER_LOCATION information is given in a grouping table. D. Jennings, 01/02/99, ffgtop() now looks for relatve file paths when the GRPLCn keyword value is supplied in the member HDU header. D. Jennings, 01/02/99, ffgtam() now trys to construct relative file paths from the member's file to the group table's file (and visa versa) when both the member's file and group table file are of access type FILE://. D. Jennings, 05/05/99, removed the ffgtcn() function; made obsolete by fits_get_url(). D. Jennings, 05/05/99, updated entire module to handle partial URLs and absolute URLs more robustly. Host dependent directory paths are now converted to true URLs before being read from/written to grouping tables. D. Jennings, 05/05/99, added the following new functions (note, none of these are directly callable by the application) int fits_path2url() int fits_url2path() int fits_get_cwd() int fits_get_url() int fits_clean_url() int fits_relurl2url() int fits_encode_url() int fits_unencode_url() int fits_is_url_absolute() -----------------------------------------------------------------------------*/ /*---------------------------------------------------------------------------*/ int ffgtcr(fitsfile *fptr, /* FITS file pointer */ char *grpname, /* name of the grouping table */ int grouptype, /* code specifying the type of grouping table information: GT_ID_ALL_URI 0 ==> defualt (all columns) GT_ID_REF 1 ==> ID by reference GT_ID_POS 2 ==> ID by position GT_ID_ALL 3 ==> ID by ref. and position GT_ID_REF_URI 11 ==> (1) + URI info GT_ID_POS_URI 12 ==> (2) + URI info */ int *status )/* return status code */ /* create a grouping table at the end of the current FITS file. This function makes the last HDU in the file the CHDU, then calls the fits_insert_group() function to actually create the new grouping table. */ { int hdutype; int hdunum; if(*status != 0) return(*status); *status = fits_get_num_hdus(fptr,&hdunum,status); /* If hdunum is 0 then we are at the beginning of the file and we actually haven't closed the first header yet, so don't do anything more */ if (0 != hdunum) { *status = fits_movabs_hdu(fptr,hdunum,&hdutype,status); } /* Now, the whole point of the above two fits_ calls was to get to the end of file. Let's ignore errors at this point and keep going since any error is likely to mean that we are already at the EOF, or the file is fatally corrupted. If we are at the EOF then the next fits_ call will be ok. If it's corrupted then the next call will fail, but that's not big deal at this point. */ if (0 != *status ) *status = 0; *status = fits_insert_group(fptr,grpname,grouptype,status); return(*status); } /*---------------------------------------------------------------------------*/ int ffgtis(fitsfile *fptr, /* FITS file pointer */ char *grpname, /* name of the grouping table */ int grouptype, /* code specifying the type of grouping table information: GT_ID_ALL_URI 0 ==> defualt (all columns) GT_ID_REF 1 ==> ID by reference GT_ID_POS 2 ==> ID by position GT_ID_ALL 3 ==> ID by ref. and position GT_ID_REF_URI 11 ==> (1) + URI info GT_ID_POS_URI 12 ==> (2) + URI info */ int *status) /* return status code */ /* insert a grouping table just after the current HDU of the current FITS file. This is the same as fits_create_group() only it allows the user to select the place within the FITS file to add the grouping table. */ { int tfields = 0; int hdunum = 0; int hdutype = 0; int extver; int i; long pcount = 0; char *ttype[6]; char *tform[6]; char ttypeBuff[102]; char tformBuff[54]; char extname[] = "GROUPING"; char keyword[FLEN_KEYWORD]; char keyvalue[FLEN_VALUE]; char comment[FLEN_COMMENT]; do { /* set up the ttype and tform character buffers */ for(i = 0; i < 6; ++i) { ttype[i] = ttypeBuff+(i*17); tform[i] = tformBuff+(i*9); } /* define the columns required according to the grouptype parameter */ *status = ffgtdc(grouptype,0,0,0,0,0,0,ttype,tform,&tfields,status); /* create the grouping table using the columns defined above */ *status = fits_insert_btbl(fptr,0,tfields,ttype,tform,NULL, NULL,pcount,status); if(*status != 0) continue; /* retrieve the hdu position of the new grouping table for future use */ fits_get_hdu_num(fptr,&hdunum); /* add the EXTNAME and EXTVER keywords to the HDU just after the TFIELDS keyword; for now the EXTVER value is set to 0, it will be set to the correct value later on */ fits_read_keyword(fptr,"TFIELDS",keyvalue,comment,status); fits_insert_key_str(fptr,"EXTNAME",extname, "HDU contains a Grouping Table",status); fits_insert_key_lng(fptr,"EXTVER",0,"Grouping Table vers. (this file)", status); /* if the grpname parameter value was defined (Non NULL and non zero length) then add the GRPNAME keyword and value */ if(grpname != NULL && strlen(grpname) > 0) fits_insert_key_str(fptr,"GRPNAME",grpname,"Grouping Table name", status); /* add the TNULL keywords and values for each integer column defined; integer null values are zero (0) for the MEMBER_POSITION and MEMBER_VERSION columns. */ for(i = 0; i < tfields && *status == 0; ++i) { if(strcasecmp(ttype[i],"MEMBER_POSITION") == 0 || strcasecmp(ttype[i],"MEMBER_VERSION") == 0) { sprintf(keyword,"TFORM%d",i+1); *status = fits_read_key_str(fptr,keyword,keyvalue,comment, status); sprintf(keyword,"TNULL%d",i+1); *status = fits_insert_key_lng(fptr,keyword,0,"Column Null Value", status); } } /* determine the correct EXTVER value for the new grouping table by finding the highest numbered grouping table EXTVER value the currently exists */ for(extver = 1; (fits_movnam_hdu(fptr,ANY_HDU,"GROUPING",extver,status)) == 0; ++extver); if(*status == BAD_HDU_NUM) *status = 0; /* move back to the new grouping table HDU and update the EXTVER keyword value */ fits_movabs_hdu(fptr,hdunum,&hdutype,status); fits_modify_key_lng(fptr,"EXTVER",extver,"&",status); }while(0); return(*status); } /*---------------------------------------------------------------------------*/ int ffgtch(fitsfile *gfptr, /* FITS pointer to group */ int grouptype, /* code specifying the type of grouping table information: GT_ID_ALL_URI 0 ==> defualt (all columns) GT_ID_REF 1 ==> ID by reference GT_ID_POS 2 ==> ID by position GT_ID_ALL 3 ==> ID by ref. and position GT_ID_REF_URI 11 ==> (1) + URI info GT_ID_POS_URI 12 ==> (2) + URI info */ int *status) /* return status code */ /* Change the grouping table structure of the grouping table pointed to by gfptr. The grouptype code specifies the new structure of the table. This operation only adds or removes grouping table columns, it does not add or delete group members (i.e., table rows). If the grouping table already has the desired structure then no operations are performed and function simply returns with a (0) success status code. If the requested structure change creates new grouping table columns, then the column values for all existing members will be filled with the appropriate null values. */ { int xtensionCol, extnameCol, extverCol, positionCol, locationCol, uriCol; int ncols = 0; int colnum = 0; int nrows = 0; int grptype = 0; int i,j; long intNull = 0; long tfields = 0; char *tform[6]; char *ttype[6]; unsigned char charNull[1] = {'\0'}; char ttypeBuff[102]; char tformBuff[54]; char keyword[FLEN_KEYWORD]; char keyvalue[FLEN_VALUE]; char comment[FLEN_COMMENT]; if(*status != 0) return(*status); do { /* set up the ttype and tform character buffers */ for(i = 0; i < 6; ++i) { ttype[i] = ttypeBuff+(i*17); tform[i] = tformBuff+(i*9); } /* retrieve positions of all Grouping table reserved columns */ *status = ffgtgc(gfptr,&xtensionCol,&extnameCol,&extverCol,&positionCol, &locationCol,&uriCol,&grptype,status); if(*status != 0) continue; /* determine the total number of grouping table columns */ *status = fits_read_key_lng(gfptr,"TFIELDS",&tfields,comment,status); /* define grouping table columns to be added to the configuration */ *status = ffgtdc(grouptype,xtensionCol,extnameCol,extverCol,positionCol, locationCol,uriCol,ttype,tform,&ncols,status); /* delete any grouping tables columns that exist but do not belong to new desired configuration; note that we delete before creating new columns for (file size) efficiency reasons */ switch(grouptype) { case GT_ID_ALL_URI: /* no columns to be deleted in this case */ break; case GT_ID_REF: if(positionCol != 0) { *status = fits_delete_col(gfptr,positionCol,status); --tfields; if(uriCol > positionCol) --uriCol; if(locationCol > positionCol) --locationCol; } if(uriCol != 0) { *status = fits_delete_col(gfptr,uriCol,status); --tfields; if(locationCol > uriCol) --locationCol; } if(locationCol != 0) *status = fits_delete_col(gfptr,locationCol,status); break; case GT_ID_POS: if(xtensionCol != 0) { *status = fits_delete_col(gfptr,xtensionCol,status); --tfields; if(extnameCol > xtensionCol) --extnameCol; if(extverCol > xtensionCol) --extverCol; if(uriCol > xtensionCol) --uriCol; if(locationCol > xtensionCol) --locationCol; } if(extnameCol != 0) { *status = fits_delete_col(gfptr,extnameCol,status); --tfields; if(extverCol > extnameCol) --extverCol; if(uriCol > extnameCol) --uriCol; if(locationCol > extnameCol) --locationCol; } if(extverCol != 0) { *status = fits_delete_col(gfptr,extverCol,status); --tfields; if(uriCol > extverCol) --uriCol; if(locationCol > extverCol) --locationCol; } if(uriCol != 0) { *status = fits_delete_col(gfptr,uriCol,status); --tfields; if(locationCol > uriCol) --locationCol; } if(locationCol != 0) { *status = fits_delete_col(gfptr,locationCol,status); --tfields; } break; case GT_ID_ALL: if(uriCol != 0) { *status = fits_delete_col(gfptr,uriCol,status); --tfields; if(locationCol > uriCol) --locationCol; } if(locationCol != 0) { *status = fits_delete_col(gfptr,locationCol,status); --tfields; } break; case GT_ID_REF_URI: if(positionCol != 0) { *status = fits_delete_col(gfptr,positionCol,status); --tfields; } break; case GT_ID_POS_URI: if(xtensionCol != 0) { *status = fits_delete_col(gfptr,xtensionCol,status); --tfields; if(extnameCol > xtensionCol) --extnameCol; if(extverCol > xtensionCol) --extverCol; } if(extnameCol != 0) { *status = fits_delete_col(gfptr,extnameCol,status); --tfields; if(extverCol > extnameCol) --extverCol; } if(extverCol != 0) { *status = fits_delete_col(gfptr,extverCol,status); --tfields; } break; default: *status = BAD_OPTION; ffpmsg("Invalid value for grouptype parameter specified (ffgtch)"); break; } /* add all the new grouping table columns that were not there previously but are called for by the grouptype parameter */ for(i = 0; i < ncols && *status == 0; ++i) *status = fits_insert_col(gfptr,tfields+i+1,ttype[i],tform[i],status); /* add the TNULL keywords and values for each new integer column defined; integer null values are zero (0) for the MEMBER_POSITION and MEMBER_VERSION columns. Insert a null ("/0") into each new string column defined: MEMBER_XTENSION, MEMBER_NAME, MEMBER_URI_TYPE and MEMBER_LOCATION. Note that by convention a null string is the TNULL value for character fields so no TNULL is required. */ for(i = 0; i < ncols && *status == 0; ++i) { if(strcasecmp(ttype[i],"MEMBER_POSITION") == 0 || strcasecmp(ttype[i],"MEMBER_VERSION") == 0) { /* col contains int data; set TNULL and insert 0 for each col */ *status = fits_get_colnum(gfptr,CASESEN,ttype[i],&colnum, status); sprintf(keyword,"TFORM%d",colnum); *status = fits_read_key_str(gfptr,keyword,keyvalue,comment, status); sprintf(keyword,"TNULL%d",colnum); *status = fits_insert_key_lng(gfptr,keyword,0, "Column Null Value",status); for(j = 1; j <= nrows && *status == 0; ++j) *status = fits_write_col_lng(gfptr,colnum,j,1,1,&intNull, status); } else if(strcasecmp(ttype[i],"MEMBER_XTENSION") == 0 || strcasecmp(ttype[i],"MEMBER_NAME") == 0 || strcasecmp(ttype[i],"MEMBER_URI_TYPE") == 0 || strcasecmp(ttype[i],"MEMBER_LOCATION") == 0) { /* new col contains character data; insert NULLs into each col */ *status = fits_get_colnum(gfptr,CASESEN,ttype[i],&colnum, status); for(j = 1; j <= nrows && *status == 0; ++j) /* WILL THIS WORK FOR VAR LENTH CHAR COLS??????*/ *status = fits_write_col_byt(gfptr,colnum,j,1,1,charNull, status); } } }while(0); return(*status); } /*---------------------------------------------------------------------------*/ int ffgtrm(fitsfile *gfptr, /* FITS file pointer to group */ int rmopt, /* code specifying if member elements are to be deleted: OPT_RM_GPT ==> remove only group table OPT_RM_ALL ==> recursively remove members and their members (if groups) */ int *status) /* return status code */ /* remove a grouping table, and optionally all its members. Any groups containing the grouping table are updated, and all members (if not deleted) have their GRPIDn and GRPLCn keywords updated accordingly. If the (deleted) members are members of another grouping table then those tables are also updated. The CHDU of the FITS file pointed to by gfptr must be positioned to the grouping table to be deleted. */ { int hdutype; long i; long nmembers = 0; HDUtracker HDU; if(*status != 0) return(*status); /* remove the grouping table depending upon the rmopt parameter */ switch(rmopt) { case OPT_RM_GPT: /* for this option, the grouping table is deleted, but the member HDUs remain; in this case we only have to remove each member from the grouping table by calling fits_remove_member() with the OPT_RM_ENTRY option */ /* get the number of members contained by this table */ *status = fits_get_num_members(gfptr,&nmembers,status); /* loop over all grouping table members and remove them */ for(i = nmembers; i > 0 && *status == 0; --i) *status = fits_remove_member(gfptr,i,OPT_RM_ENTRY,status); break; case OPT_RM_ALL: /* for this option the entire Group is deleted -- this includes all members and their members (if grouping tables themselves). Call the recursive form of this function to perform the removal. */ /* add the current grouping table to the HDUtracker struct */ HDU.nHDU = 0; *status = fftsad(gfptr,&HDU,NULL,NULL); /* call the recursive group remove function */ *status = ffgtrmr(gfptr,&HDU,status); /* free the memory allocated to the HDUtracker struct */ for(i = 0; i < HDU.nHDU; ++i) { free(HDU.filename[i]); free(HDU.newFilename[i]); } break; default: *status = BAD_OPTION; ffpmsg("Invalid value for the rmopt parameter specified (ffgtrm)"); break; } /* if all went well then unlink and delete the grouping table HDU */ *status = ffgmul(gfptr,0,status); *status = fits_delete_hdu(gfptr,&hdutype,status); return(*status); } /*---------------------------------------------------------------------------*/ int ffgtcp(fitsfile *infptr, /* input FITS file pointer */ fitsfile *outfptr, /* output FITS file pointer */ int cpopt, /* code specifying copy options: OPT_GCP_GPT (0) ==> copy only grouping table OPT_GCP_ALL (2) ==> recusrively copy members and their members (if groups) */ int *status) /* return status code */ /* copy a grouping table, and optionally all its members, to a new FITS file. If the cpopt is set to OPT_GCP_GPT (copy grouping table only) then the existing members have their GRPIDn and GRPLCn keywords updated to reflect the existance of the new group, since they now belong to another group. If cpopt is set to OPT_GCP_ALL (copy grouping table and members recursively) then the original members are not updated; the new grouping table is modified to include only the copied member HDUs and not the original members. Note that the recursive version of this function, ffgtcpr(), is called to perform the group table copy. In the case of cpopt == OPT_GCP_GPT ffgtcpr() does not actually use recursion. */ { int i; HDUtracker HDU; if(*status != 0) return(*status); /* make sure infptr and outfptr are not the same pointer */ if(infptr == outfptr) *status = IDENTICAL_POINTERS; else { /* initialize the HDUtracker struct */ HDU.nHDU = 0; *status = fftsad(infptr,&HDU,NULL,NULL); /* call the recursive form of this function to copy the grouping table. If the cpopt is OPT_GCP_GPT then there is actually no recursion performed */ *status = ffgtcpr(infptr,outfptr,cpopt,&HDU,status); /* free memory allocated for the HDUtracker struct */ for(i = 0; i < HDU.nHDU; ++i) { free(HDU.filename[i]); free(HDU.newFilename[i]); } } return(*status); } /*---------------------------------------------------------------------------*/ int ffgtmg(fitsfile *infptr, /* FITS file ptr to source grouping table */ fitsfile *outfptr, /* FITS file ptr to target grouping table */ int mgopt, /* code specifying merge options: OPT_MRG_COPY (0) ==> copy members to target group, leaving source group in place OPT_MRG_MOV (1) ==> move members to target group, source group is deleted after merge */ int *status) /* return status code */ /* merge two grouping tables by combining their members into a single table. The source grouping table must be the CHDU of the fitsfile pointed to by infptr, and the target grouping table must be the CHDU of the fitsfile to by outfptr. All members of the source grouping table shall be copied to the target grouping table. If the mgopt parameter is OPT_MRG_COPY then the source grouping table continues to exist after the merge. If the mgopt parameter is OPT_MRG_MOV then the source grouping table is deleted after the merge, and all member HDUs are updated accordingly. */ { long i ; long nmembers = 0; fitsfile *tmpfptr = NULL; if(*status != 0) return(*status); do { *status = fits_get_num_members(infptr,&nmembers,status); for(i = 1; i <= nmembers && *status == 0; ++i) { *status = fits_open_member(infptr,i,&tmpfptr,status); *status = fits_add_group_member(outfptr,tmpfptr,0,status); if(*status == HDU_ALREADY_MEMBER) *status = 0; if(tmpfptr != NULL) { fits_close_file(tmpfptr,status); tmpfptr = NULL; } } if(*status != 0) continue; if(mgopt == OPT_MRG_MOV) *status = fits_remove_group(infptr,OPT_RM_GPT,status); }while(0); if(tmpfptr != NULL) { fits_close_file(tmpfptr,status); } return(*status); } /*---------------------------------------------------------------------------*/ int ffgtcm(fitsfile *gfptr, /* FITS file pointer to grouping table */ int cmopt, /* code specifying compact options OPT_CMT_MBR (1) ==> compact only direct members (if groups) OPT_CMT_MBR_DEL (11) ==> (1) + delete all compacted groups */ int *status) /* return status code */ /* "Compact" a group pointed to by the FITS file pointer gfptr. This is achieved by flattening the tree structure of a group and its (grouping table) members. All members HDUs of a grouping table which is itself a member of the grouping table gfptr are added to gfptr. Optionally, the grouping tables which are "compacted" are deleted. If the grouping table contains no members that are themselves grouping tables then this function performs a NOOP. */ { long i; long nmembers = 0; char keyvalue[FLEN_VALUE]; char comment[FLEN_COMMENT]; fitsfile *mfptr = NULL; if(*status != 0) return(*status); do { if(cmopt != OPT_CMT_MBR && cmopt != OPT_CMT_MBR_DEL) { *status = BAD_OPTION; ffpmsg("Invalid value for cmopt parameter specified (ffgtcm)"); continue; } /* reteive the number of grouping table members */ *status = fits_get_num_members(gfptr,&nmembers,status); /* loop over all the grouping table members; if the member is a grouping table then merge its members with the parent grouping table */ for(i = 1; i <= nmembers && *status == 0; ++i) { *status = fits_open_member(gfptr,i,&mfptr,status); if(*status != 0) continue; *status = fits_read_key_str(mfptr,"EXTNAME",keyvalue,comment,status); /* if no EXTNAME keyword then cannot be a grouping table */ if(*status == KEY_NO_EXIST) { *status = 0; continue; } prepare_keyvalue(keyvalue); if(*status != 0) continue; /* if EXTNAME == "GROUPING" then process member as grouping table */ if(strcasecmp(keyvalue,"GROUPING") == 0) { /* merge the member (grouping table) into the grouping table */ *status = fits_merge_groups(mfptr,gfptr,OPT_MRG_COPY,status); *status = fits_close_file(mfptr,status); mfptr = NULL; /* remove the member from the grouping table now that all of its members have been transferred; if cmopt is set to OPT_CMT_MBR_DEL then remove and delete the member */ if(cmopt == OPT_CMT_MBR) *status = fits_remove_member(gfptr,i,OPT_RM_ENTRY,status); else *status = fits_remove_member(gfptr,i,OPT_RM_MBR,status); } else { /* not a grouping table; just close the opened member */ *status = fits_close_file(mfptr,status); mfptr = NULL; } } }while(0); return(*status); } /*--------------------------------------------------------------------------*/ int ffgtvf(fitsfile *gfptr, /* FITS file pointer to group */ long *firstfailed, /* Member ID (if positive) of first failed member HDU verify check or GRPID index (if negitive) of first failed group link verify check. */ int *status) /* return status code */ /* check the integrity of a grouping table to make sure that all group members are accessible and all the links to other grouping tables are valid. The firstfailed parameter returns the member ID of the first member HDU to fail verification if positive or the first group link to fail if negative; otherwise firstfailed contains a return value of 0. */ { long i; long nmembers = 0; long ngroups = 0; char errstr[FLEN_VALUE]; fitsfile *fptr = NULL; if(*status != 0) return(*status); *firstfailed = 0; do { /* attempt to open all the members of the grouping table. We stop at the first member which cannot be opened (which implies that it cannot be located) */ *status = fits_get_num_members(gfptr,&nmembers,status); for(i = 1; i <= nmembers && *status == 0; ++i) { *status = fits_open_member(gfptr,i,&fptr,status); fits_close_file(fptr,status); } /* if the status is non-zero from the above loop then record the member index that caused the error */ if(*status != 0) { *firstfailed = i; sprintf(errstr,"Group table verify failed for member %ld (ffgtvf)", i); ffpmsg(errstr); continue; } /* attempt to open all the groups linked to this grouping table. We stop at the first group which cannot be opened (which implies that it cannot be located) */ *status = fits_get_num_groups(gfptr,&ngroups,status); for(i = 1; i <= ngroups && *status == 0; ++i) { *status = fits_open_group(gfptr,i,&fptr,status); fits_close_file(fptr,status); } /* if the status from the above loop is non-zero, then record the GRPIDn index of the group that caused the failure */ if(*status != 0) { *firstfailed = -1*i; sprintf(errstr, "Group table verify failed for GRPID index %ld (ffgtvf)",i); ffpmsg(errstr); continue; } }while(0); return(*status); } /*---------------------------------------------------------------------------*/ int ffgtop(fitsfile *mfptr, /* FITS file pointer to the member HDU */ int grpid, /* group ID (GRPIDn index) within member HDU */ fitsfile **gfptr, /* FITS file pointer to grouping table HDU */ int *status) /* return status code */ /* open the grouping table that contains the member HDU. The member HDU must be the CHDU of the FITS file pointed to by mfptr, and the grouping table is identified by the Nth index number of the GRPIDn keywords specified in the member HDU's header. The fitsfile gfptr pointer is positioned with the appropriate FITS file with the grouping table as the CHDU. If the group grouping table resides in a file other than the member then an attempt is first made to open the file readwrite, and failing that readonly. Note that it is possible for the GRPIDn/GRPLCn keywords in a member header to be non-continuous, e.g., GRPID1, GRPID2, GRPID5, GRPID6. In such cases, the grpid index value specified in the function call shall identify the (grpid)th GRPID value. In the above example, if grpid == 3, then the group specified by GRPID5 would be opened. */ { int i; int found; long ngroups = 0; long grpExtver = 0; char keyword[FLEN_KEYWORD]; char keyvalue[FLEN_FILENAME]; char *tkeyvalue; char location[FLEN_FILENAME]; char location1[FLEN_FILENAME]; char location2[FLEN_FILENAME]; char comment[FLEN_COMMENT]; char *url[2]; if(*status != 0) return(*status); do { /* set the grouping table pointer to NULL for error checking later */ *gfptr = NULL; /* make sure that the group ID requested is valid ==> cannot be larger than the number of GRPIDn keywords in the member HDU header */ *status = fits_get_num_groups(mfptr,&ngroups,status); if(grpid > ngroups) { *status = BAD_GROUP_ID; sprintf(comment, "GRPID index %d larger total GRPID keywords %ld (ffgtop)", grpid,ngroups); ffpmsg(comment); continue; } /* find the (grpid)th group that the member HDU belongs to and read the value of the GRPID(grpid) keyword; fits_get_num_groups() automatically re-enumerates the GRPIDn/GRPLCn keywords to fill in any gaps */ sprintf(keyword,"GRPID%d",grpid); *status = fits_read_key_lng(mfptr,keyword,&grpExtver,comment,status); if(*status != 0) continue; /* if the value of the GRPIDn keyword is positive then the member is in the same FITS file as the grouping table and we only have to reopen the current FITS file. Else the member and grouping table HDUs reside in different files and another FITS file must be opened as specified by the corresponding GRPLCn keyword The DO WHILE loop only executes once and is used to control the file opening logic. */ do { if(grpExtver > 0) { /* the member resides in the same file as the grouping table, so just reopen the grouping table file */ *status = fits_reopen_file(mfptr,gfptr,status); continue; } else if(grpExtver == 0) { /* a GRPIDn value of zero (0) is undefined */ *status = BAD_GROUP_ID; sprintf(comment,"Invalid value of %ld for GRPID%d (ffgtop)", grpExtver,grpid); ffpmsg(comment); continue; } /* The GRPLCn keyword value is negative, which implies that the grouping table must reside in another FITS file; search for the corresponding GRPLCn keyword */ /* set the grpExtver value positive */ grpExtver = -1*grpExtver; /* read the GRPLCn keyword value */ sprintf(keyword,"GRPLC%d",grpid); /* SPR 1738 */ *status = fits_read_key_longstr(mfptr,keyword,&tkeyvalue,comment, status); if (0 == *status) { strcpy(keyvalue,tkeyvalue); free(tkeyvalue); } /* if the GRPLCn keyword was not found then there is a problem */ if(*status == KEY_NO_EXIST) { *status = BAD_GROUP_ID; sprintf(comment,"Cannot find GRPLC%d keyword (ffgtop)", grpid); ffpmsg(comment); continue; } prepare_keyvalue(keyvalue); /* if the GRPLCn keyword value specifies an absolute URL then try to open the file; we cannot attempt any relative URL or host-dependent file path reconstruction */ if(fits_is_url_absolute(keyvalue)) { ffpmsg("Try to open group table file as absolute URL (ffgtop)"); *status = fits_open_file(gfptr,keyvalue,READWRITE,status); /* if the open was successful then continue */ if(*status == 0) continue; /* if READWRITE failed then try opening it READONLY */ ffpmsg("OK, try open group table file as READONLY (ffgtop)"); *status = 0; *status = fits_open_file(gfptr,keyvalue,READONLY,status); /* continue regardless of the outcome */ continue; } /* see if the URL gives a file path that is absolute on the host machine */ *status = fits_url2path(keyvalue,location1,status); *status = fits_open_file(gfptr,location1,READWRITE,status); /* if the file opened then continue */ if(*status == 0) continue; /* if READWRITE failed then try opening it READONLY */ ffpmsg("OK, try open group table file as READONLY (ffgtop)"); *status = 0; *status = fits_open_file(gfptr,location1,READONLY,status); /* if the file opened then continue */ if(*status == 0) continue; /* the grouping table location given by GRPLCn must specify a relative URL. We assume that this URL is relative to the member HDU's FITS file. Try to construct a full URL location for the grouping table's FITS file and then open it */ *status = 0; /* retrieve the URL information for the member HDU's file */ url[0] = location1; url[1] = location2; *status = fits_get_url(mfptr,url[0],url[1],NULL,NULL,NULL,status); /* It is possible that the member HDU file has an initial URL it was opened with and a real URL that the file actually exists at (e.g., an HTTP accessed file copied to a local file). For each possible URL try to construct a */ for(i = 0, found = 0, *gfptr = NULL; i < 2 && !found; ++i) { /* the url string could be empty */ if(*url[i] == 0) continue; /* create a full URL from the partial and the member HDU file URL */ *status = fits_relurl2url(url[i],keyvalue,location,status); /* if an error occured then contniue */ if(*status != 0) { *status = 0; continue; } /* if the location does not specify an access method then turn it into a host dependent path */ if(! fits_is_url_absolute(location)) { *status = fits_url2path(location,url[i],status); strcpy(location,url[i]); } /* try to open the grouping table file READWRITE */ *status = fits_open_file(gfptr,location,READWRITE,status); if(*status != 0) { /* try to open the grouping table file READONLY */ ffpmsg("opening file as READWRITE failed (ffgtop)"); ffpmsg("OK, try to open file as READONLY (ffgtop)"); *status = 0; *status = fits_open_file(gfptr,location,READONLY,status); } /* either set the found flag or reset the status flag */ if(*status == 0) found = 1; else *status = 0; } }while(0); /* end of file opening loop */ /* if an error occured with the file opening then exit */ if(*status != 0) continue; if(*gfptr == NULL) { ffpmsg("Cannot open or find grouping table FITS file (ffgtop)"); *status = GROUP_NOT_FOUND; continue; } /* search for the grouping table in its FITS file */ *status = fits_movnam_hdu(*gfptr,ANY_HDU,"GROUPING",(int)grpExtver, status); if(*status != 0) *status = GROUP_NOT_FOUND; }while(0); if(*status != 0 && *gfptr != NULL) { fits_close_file(*gfptr,status); *gfptr = NULL; } return(*status); } /*---------------------------------------------------------------------------*/ int ffgtam(fitsfile *gfptr, /* FITS file pointer to grouping table HDU */ fitsfile *mfptr, /* FITS file pointer to member HDU */ int hdupos, /* member HDU position IF in the same file as the grouping table AND mfptr == NULL */ int *status) /* return status code */ /* add a member HDU to an existing grouping table. The fitsfile pointer gfptr must be positioned with the grouping table as the CHDU. The member HDU may either be identifed with the fitsfile *mfptr (which must be positioned to the member HDU) or the hdupos parameter (the HDU number of the member HDU) if both reside in the same FITS file. The hdupos value is only used if the mfptr parameter has a value of NULL (0). The new member HDU shall have the appropriate GRPIDn and GRPLCn keywords created in its header. Note that if the member HDU to be added to the grouping table is already a member of the group then it will not be added a sceond time. */ { int xtensionCol,extnameCol,extverCol,positionCol,locationCol,uriCol; int memberPosition = 0; int grptype = 0; int hdutype = 0; int useLocation = 0; int nkeys = 6; int found; int i; int memberIOstate; int groupIOstate; int iomode; long memberExtver = 0; long groupExtver = 0; long memberID = 0; long nmembers = 0; long ngroups = 0; long grpid = 0; char memberAccess1[FLEN_VALUE]; char memberAccess2[FLEN_VALUE]; char memberFileName[FLEN_FILENAME]; char memberLocation[FLEN_FILENAME]; char grplc[FLEN_FILENAME]; char *tgrplc; char memberHDUtype[FLEN_VALUE]; char memberExtname[FLEN_VALUE]; char memberURI[] = "URL"; char groupAccess1[FLEN_VALUE]; char groupAccess2[FLEN_VALUE]; char groupFileName[FLEN_FILENAME]; char groupLocation[FLEN_FILENAME]; char tmprootname[FLEN_FILENAME], grootname[FLEN_FILENAME]; char cwd[FLEN_FILENAME]; char *keys[] = {"GRPNAME","EXTVER","EXTNAME","TFIELDS","GCOUNT","EXTEND"}; char *tmpPtr[1]; char keyword[FLEN_KEYWORD]; char card[FLEN_CARD]; unsigned char charNull[] = {'\0'}; fitsfile *tmpfptr = NULL; int parentStatus = 0; if(*status != 0) return(*status); do { /* make sure the grouping table can be modified before proceeding */ fits_file_mode(gfptr,&iomode,status); if(iomode != READWRITE) { ffpmsg("cannot modify grouping table (ffgtam)"); *status = BAD_GROUP_ATTACH; continue; } /* if the calling function supplied the HDU position of the member HDU instead of fitsfile pointer then get a fitsfile pointer */ if(mfptr == NULL) { *status = fits_reopen_file(gfptr,&tmpfptr,status); *status = fits_movabs_hdu(tmpfptr,hdupos,&hdutype,status); if(*status != 0) continue; } else tmpfptr = mfptr; /* determine all the information about the member HDU that will be needed later; note that we establish the default values for all information values that are not explicitly found */ *status = fits_read_key_str(tmpfptr,"XTENSION",memberHDUtype,card, status); if(*status == KEY_NO_EXIST) { strcpy(memberHDUtype,"PRIMARY"); *status = 0; } prepare_keyvalue(memberHDUtype); *status = fits_read_key_lng(tmpfptr,"EXTVER",&memberExtver,card,status); if(*status == KEY_NO_EXIST) { memberExtver = 1; *status = 0; } *status = fits_read_key_str(tmpfptr,"EXTNAME",memberExtname,card, status); if(*status == KEY_NO_EXIST) { memberExtname[0] = 0; *status = 0; } prepare_keyvalue(memberExtname); fits_get_hdu_num(tmpfptr,&memberPosition); /* Determine if the member HDU's FITS file location needs to be taken into account when building its grouping table reference If the member location needs to be used (==> grouping table and member HDU reside in different files) then create an appropriate URL for the member HDU's file and grouping table's file. Note that the logic for this is rather complicated */ /* SPR 3463, don't do this if(tmpfptr->Fptr == gfptr->Fptr) { */ /* member HDU and grouping table reside in the same file, no need to use the location information */ /* printf ("same file\n"); useLocation = 0; memberIOstate = 1; *memberFileName = 0; } else { */ /* the member HDU and grouping table FITS file location information must be used. First determine the correct driver and file name for the group table and member HDU files. If either are disk files then construct an absolute file path for them. Finally, if both are disk files construct relative file paths from the group(member) file to the member(group) file. */ /* set the USELOCATION flag to true */ useLocation = 1; /* get the location, access type and iostate (RO, RW) of the member HDU file */ *status = fits_get_url(tmpfptr,memberFileName,memberLocation, memberAccess1,memberAccess2,&memberIOstate, status); /* if the memberFileName string is empty then use the values of the memberLocation string. This corresponds to a file where the "real" file is a temporary memory file, and we must assume the the application really wants the original file to be the group member */ if(strlen(memberFileName) == 0) { strcpy(memberFileName,memberLocation); strcpy(memberAccess1,memberAccess2); } /* get the location, access type and iostate (RO, RW) of the grouping table file */ *status = fits_get_url(gfptr,groupFileName,groupLocation, groupAccess1,groupAccess2,&groupIOstate, status); if(*status != 0) continue; /* the grouping table file must be writable to continue */ if(groupIOstate == 0) { ffpmsg("cannot modify grouping table (ffgtam)"); *status = BAD_GROUP_ATTACH; continue; } /* determine how to construct the resulting URLs for the member and group files */ if(strcasecmp(groupAccess1,"file://") && strcasecmp(memberAccess1,"file://")) { *cwd = 0; /* nothing to do in this case; both the member and group files must be of an access type that already gives valid URLs; i.e., URLs that we can pass directly to the file drivers */ } else { /* retrieve the Current Working Directory as a Unix-like URL standard string */ *status = fits_get_cwd(cwd,status); /* create full file path for the member HDU FITS file URL if it is of access type file:// */ if(strcasecmp(memberAccess1,"file://") == 0) { if(*memberFileName == '/') { strcpy(memberLocation,memberFileName); } else { strcpy(memberLocation,cwd); strcat(memberLocation,"/"); strcat(memberLocation,memberFileName); } *status = fits_clean_url(memberLocation,memberFileName, status); } /* create full file path for the grouping table HDU FITS file URL if it is of access type file:// */ if(strcasecmp(groupAccess1,"file://") == 0) { if(*groupFileName == '/') { strcpy(groupLocation,groupFileName); } else { strcpy(groupLocation,cwd); strcat(groupLocation,"/"); strcat(groupLocation,groupFileName); } *status = fits_clean_url(groupLocation,groupFileName,status); } /* if both the member and group files are disk files then create a relative path (relative URL) strings with respect to the grouping table's file and the grouping table's file with respect to the member HDU's file */ if(strcasecmp(groupAccess1,"file://") == 0 && strcasecmp(memberAccess1,"file://") == 0) { fits_url2relurl(memberFileName,groupFileName, groupLocation,status); fits_url2relurl(groupFileName,memberFileName, memberLocation,status); /* copy the resulting partial URL strings to the memberFileName and groupFileName variables for latter use in the function */ strcpy(memberFileName,memberLocation); strcpy(groupFileName,groupLocation); } } /* beo done */ /* } */ /* retrieve the grouping table's EXTVER value */ *status = fits_read_key_lng(gfptr,"EXTVER",&groupExtver,card,status); /* if useLocation is true then make the group EXTVER value negative for the subsequent GRPIDn/GRPLCn matching */ /* SPR 3463 change test; WDP added test for same filename */ /* Now, if either the Fptr values are the same, or the root filenames are the same, then assume these refer to the same file. */ fits_parse_rootname(tmpfptr->Fptr->filename, tmprootname, status); fits_parse_rootname(gfptr->Fptr->filename, grootname, status); if((tmpfptr->Fptr != gfptr->Fptr) && strncmp(tmprootname, grootname, FLEN_FILENAME)) groupExtver = -1*groupExtver; /* retrieve the number of group members */ *status = fits_get_num_members(gfptr,&nmembers,status); do { /* make sure the member HDU is not already an entry in the grouping table before adding it */ *status = ffgmf(gfptr,memberHDUtype,memberExtname,memberExtver, memberPosition,memberFileName,&memberID,status); if(*status == MEMBER_NOT_FOUND) *status = 0; else if(*status == 0) { parentStatus = HDU_ALREADY_MEMBER; ffpmsg("Specified HDU is already a member of the Grouping table (ffgtam)"); continue; } else continue; /* if the member HDU is not already recorded in the grouping table then add it */ /* add a new row to the grouping table */ *status = fits_insert_rows(gfptr,nmembers,1,status); ++nmembers; /* retrieve the grouping table column IDs and structure type */ *status = ffgtgc(gfptr,&xtensionCol,&extnameCol,&extverCol,&positionCol, &locationCol,&uriCol,&grptype,status); /* fill in the member HDU data in the new grouping table row */ *tmpPtr = memberHDUtype; if(xtensionCol != 0) fits_write_col_str(gfptr,xtensionCol,nmembers,1,1,tmpPtr,status); *tmpPtr = memberExtname; if(extnameCol != 0) { if(strlen(memberExtname) != 0) fits_write_col_str(gfptr,extnameCol,nmembers,1,1,tmpPtr,status); else /* WILL THIS WORK FOR VAR LENTH CHAR COLS??????*/ fits_write_col_byt(gfptr,extnameCol,nmembers,1,1,charNull,status); } if(extverCol != 0) fits_write_col_lng(gfptr,extverCol,nmembers,1,1,&memberExtver, status); if(positionCol != 0) fits_write_col_int(gfptr,positionCol,nmembers,1,1, &memberPosition,status); *tmpPtr = memberFileName; if(locationCol != 0) { /* Change the test for SPR 3463 */ /* Now, if either the Fptr values are the same, or the root filenames are the same, then assume these refer to the same file. */ fits_parse_rootname(tmpfptr->Fptr->filename, tmprootname, status); fits_parse_rootname(gfptr->Fptr->filename, grootname, status); if((tmpfptr->Fptr != gfptr->Fptr) && strncmp(tmprootname, grootname, FLEN_FILENAME)) fits_write_col_str(gfptr,locationCol,nmembers,1,1,tmpPtr,status); else /* WILL THIS WORK FOR VAR LENTH CHAR COLS??????*/ fits_write_col_byt(gfptr,locationCol,nmembers,1,1,charNull,status); } *tmpPtr = memberURI; if(uriCol != 0) { /* Change the test for SPR 3463 */ /* Now, if either the Fptr values are the same, or the root filenames are the same, then assume these refer to the same file. */ fits_parse_rootname(tmpfptr->Fptr->filename, tmprootname, status); fits_parse_rootname(gfptr->Fptr->filename, grootname, status); if((tmpfptr->Fptr != gfptr->Fptr) && strncmp(tmprootname, grootname, FLEN_FILENAME)) fits_write_col_str(gfptr,uriCol,nmembers,1,1,tmpPtr,status); else /* WILL THIS WORK FOR VAR LENTH CHAR COLS??????*/ fits_write_col_byt(gfptr,uriCol,nmembers,1,1,charNull,status); } } while(0); if(0 != *status) continue; /* add GRPIDn/GRPLCn keywords to the member HDU header to link it to the grouing table if the they do not already exist and the member file is RW */ fits_file_mode(tmpfptr,&iomode,status); if(memberIOstate == 0 || iomode != READWRITE) { ffpmsg("cannot add GRPID/LC keywords to member HDU: (ffgtam)"); ffpmsg(memberFileName); continue; } *status = fits_get_num_groups(tmpfptr,&ngroups,status); /* look for the GRPID/LC keywords in the member HDU; if the keywords for the back-link to the grouping table already exist then no need to add them again */ for(i = 1, found = 0; i <= ngroups && !found && *status == 0; ++i) { sprintf(keyword,"GRPID%d",(int)ngroups); *status = fits_read_key_lng(tmpfptr,keyword,&grpid,card,status); if(grpid == groupExtver) { if(grpid < 0) { /* have to make sure the GRPLCn keyword matches too */ sprintf(keyword,"GRPLC%d",(int)ngroups); /* SPR 1738 */ *status = fits_read_key_longstr(mfptr,keyword,&tgrplc,card, status); if (0 == *status) { strcpy(grplc,tgrplc); free(tgrplc); } /* always compare files using absolute paths the presence of a non-empty cwd indicates that the file names may require conversion to absolute paths */ if(0 < strlen(cwd)) { /* temp buffer for use in assembling abs. path(s) */ char tmp[FLEN_FILENAME]; /* make grplc absolute if necessary */ if(!fits_is_url_absolute(grplc)) { fits_path2url(grplc,groupLocation,status); if(groupLocation[0] != '/') { strcpy(tmp, cwd); strcat(tmp,"/"); strcat(tmp,groupLocation); fits_clean_url(tmp,grplc,status); } } /* make groupFileName absolute if necessary */ if(!fits_is_url_absolute(groupFileName)) { fits_path2url(groupFileName,groupLocation,status); if(groupLocation[0] != '/') { strcpy(tmp, cwd); strcat(tmp,"/"); strcat(tmp,groupLocation); /* note: use groupLocation (which is not used below this block), to store the absolute file name instead of using groupFileName. The latter may be needed unaltered if the GRPLC is written below */ fits_clean_url(tmp,groupLocation,status); } } } /* see if the grplc value and the group file name match */ if(strcmp(grplc,groupLocation) == 0) found = 1; } else { /* the match is found with GRPIDn alone */ found = 1; } } } /* if FOUND is true then no need to continue */ if(found) { ffpmsg("HDU already has GRPID/LC keywords for group table (ffgtam)"); continue; } /* add the GRPID/LC keywords to the member header for this grouping table If NGROUPS == 0 then we must position the header pointer to the record where we want to insert the GRPID/LC keywords (the pointer is already correctly positioned if the above search loop activiated) */ if(ngroups == 0) { /* no GRPIDn/GRPLCn keywords currently exist in header so try to position the header pointer to a desirable position */ for(i = 0, *status = KEY_NO_EXIST; i < nkeys && *status == KEY_NO_EXIST; ++i) { *status = 0; *status = fits_read_card(tmpfptr,keys[i],card,status); } /* all else fails: move write pointer to end of header */ if(*status == KEY_NO_EXIST) { *status = 0; fits_get_hdrspace(tmpfptr,&nkeys,&i,status); ffgrec(tmpfptr,nkeys,card,status); } /* any other error status then abort */ if(*status != 0) continue; } /* now that the header pointer is positioned for the GRPID/LC keyword insertion increment the number of group links counter for the member HDU */ ++ngroups; /* if the member HDU and grouping table reside in the same FITS file then there is no need to add a GRPLCn keyword */ /* SPR 3463 change test */ /* Now, if either the Fptr values are the same, or the root filenames are the same, then assume these refer to the same file. */ fits_parse_rootname(tmpfptr->Fptr->filename, tmprootname, status); fits_parse_rootname(gfptr->Fptr->filename, grootname, status); if((tmpfptr->Fptr == gfptr->Fptr) || strncmp(tmprootname, grootname, FLEN_FILENAME) == 0) { /* add the GRPIDn keyword only */ sprintf(keyword,"GRPID%d",(int)ngroups); fits_insert_key_lng(tmpfptr,keyword,groupExtver, "EXTVER of Group containing this HDU",status); } else { /* add the GRPIDn and GRPLCn keywords */ sprintf(keyword,"GRPID%d",(int)ngroups); fits_insert_key_lng(tmpfptr,keyword,groupExtver, "EXTVER of Group containing this HDU",status); sprintf(keyword,"GRPLC%d",(int)ngroups); /* SPR 1738 */ fits_insert_key_longstr(tmpfptr,keyword,groupFileName, "URL of file containing Group",status); fits_write_key_longwarn(tmpfptr,status); } }while(0); /* close the tmpfptr pointer if it was opened in this function */ if(mfptr == NULL) { *status = fits_close_file(tmpfptr,status); } *status = 0 == *status ? parentStatus : *status; return(*status); } /*---------------------------------------------------------------------------*/ int ffgtnm(fitsfile *gfptr, /* FITS file pointer to grouping table */ long *nmembers, /* member count of the groping table */ int *status) /* return status code */ /* return the number of member HDUs in a grouping table. The fitsfile pointer gfptr must be positioned with the grouping table as the CHDU. The number of grouping table member HDUs is just the NAXIS2 value of the grouping table. */ { char keyvalue[FLEN_VALUE]; char comment[FLEN_COMMENT]; if(*status != 0) return(*status); *status = fits_read_keyword(gfptr,"EXTNAME",keyvalue,comment,status); if(*status == KEY_NO_EXIST) *status = NOT_GROUP_TABLE; else { prepare_keyvalue(keyvalue); if(strcasecmp(keyvalue,"GROUPING") != 0) { *status = NOT_GROUP_TABLE; ffpmsg("Specified HDU is not a Grouping table (ffgtnm)"); } *status = fits_read_key_lng(gfptr,"NAXIS2",nmembers,comment,status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffgmng(fitsfile *mfptr, /* FITS file pointer to member HDU */ long *ngroups, /* total number of groups linked to HDU */ int *status) /* return status code */ /* return the number of groups to which a HDU belongs, as defined by the number of GRPIDn/GRPLCn keyword records that appear in the HDU header. The fitsfile pointer mfptr must be positioned with the member HDU as the CHDU. Each time this function is called, the indicies of the GRPIDn/GRPLCn keywords are checked to make sure they are continuous (ie no gaps) and are re-enumerated to eliminate gaps if gaps are found to be present. */ { int offset; int index; int newIndex; int i; long grpid; char *inclist[] = {"GRPID#"}; char keyword[FLEN_KEYWORD]; char newKeyword[FLEN_KEYWORD]; char card[FLEN_CARD]; char comment[FLEN_COMMENT]; char *tkeyvalue; if(*status != 0) return(*status); *ngroups = 0; /* reset the member HDU keyword counter to the beginning */ *status = ffgrec(mfptr,0,card,status); /* search for the number of GRPIDn keywords in the member HDU header and count them with the ngroups variable */ while(*status == 0) { /* read the next GRPIDn keyword in the series */ *status = fits_find_nextkey(mfptr,inclist,1,NULL,0,card,status); if(*status != 0) continue; ++(*ngroups); } if(*status == KEY_NO_EXIST) *status = 0; /* read each GRPIDn/GRPLCn keyword and adjust their index values so that there are no gaps in the index count */ for(index = 1, offset = 0, i = 1; i <= *ngroups && *status == 0; ++index) { sprintf(keyword,"GRPID%d",index); /* try to read the next GRPIDn keyword in the series */ *status = fits_read_key_lng(mfptr,keyword,&grpid,card,status); /* if not found then increment the offset counter and continue */ if(*status == KEY_NO_EXIST) { *status = 0; ++offset; } else { /* increment the number_keys_found counter and see if the index of the keyword needs to be updated */ ++i; if(offset > 0) { /* compute the new index for the GRPIDn/GRPLCn keywords */ newIndex = index - offset; /* update the GRPIDn keyword index */ sprintf(newKeyword,"GRPID%d",newIndex); fits_modify_name(mfptr,keyword,newKeyword,status); /* If present, update the GRPLCn keyword index */ sprintf(keyword,"GRPLC%d",index); sprintf(newKeyword,"GRPLC%d",newIndex); /* SPR 1738 */ *status = fits_read_key_longstr(mfptr,keyword,&tkeyvalue,comment, status); if (0 == *status) { fits_delete_key(mfptr,keyword,status); fits_insert_key_longstr(mfptr,newKeyword,tkeyvalue,comment,status); fits_write_key_longwarn(mfptr,status); free(tkeyvalue); } if(*status == KEY_NO_EXIST) *status = 0; } } } return(*status); } /*---------------------------------------------------------------------------*/ int ffgmop(fitsfile *gfptr, /* FITS file pointer to grouping table */ long member, /* member ID (row num) within grouping table */ fitsfile **mfptr, /* FITS file pointer to member HDU */ int *status) /* return status code */ /* open a grouping table member, returning a pointer to the member's FITS file with the CHDU set to the member HDU. The grouping table must be the CHDU of the FITS file pointed to by gfptr. The member to open is identified by its row number within the grouping table (first row/member == 1). If the member resides in a FITS file different from the grouping table the member file is first opened readwrite and if this fails then it is opened readonly. For access type of FILE:// the member file is searched for assuming (1) an absolute path is given, (2) a path relative to the CWD is given, and (3) a path relative to the grouping table file but not relative to the CWD is given. If all of these fail then the error FILE_NOT_FOUND is returned. */ { int xtensionCol,extnameCol,extverCol,positionCol,locationCol,uriCol; int grptype,hdutype; int dummy; long hdupos = 0; long extver = 0; char xtension[FLEN_VALUE]; char extname[FLEN_VALUE]; char uri[FLEN_VALUE]; char grpLocation1[FLEN_FILENAME]; char grpLocation2[FLEN_FILENAME]; char mbrLocation1[FLEN_FILENAME]; char mbrLocation2[FLEN_FILENAME]; char mbrLocation3[FLEN_FILENAME]; char cwd[FLEN_FILENAME]; char card[FLEN_CARD]; char nstr[] = {'\0'}; char *tmpPtr[1]; if(*status != 0) return(*status); do { /* retrieve the Grouping Convention reserved column positions within the grouping table */ *status = ffgtgc(gfptr,&xtensionCol,&extnameCol,&extverCol,&positionCol, &locationCol,&uriCol,&grptype,status); if(*status != 0) continue; /* extract the member information from grouping table */ tmpPtr[0] = xtension; if(xtensionCol != 0) { *status = fits_read_col_str(gfptr,xtensionCol,member,1,1,nstr, tmpPtr,&dummy,status); /* convert the xtension string to a hdutype code */ if(strcasecmp(xtension,"PRIMARY") == 0) hdutype = IMAGE_HDU; else if(strcasecmp(xtension,"IMAGE") == 0) hdutype = IMAGE_HDU; else if(strcasecmp(xtension,"TABLE") == 0) hdutype = ASCII_TBL; else if(strcasecmp(xtension,"BINTABLE") == 0) hdutype = BINARY_TBL; else hdutype = ANY_HDU; } tmpPtr[0] = extname; if(extnameCol != 0) *status = fits_read_col_str(gfptr,extnameCol,member,1,1,nstr, tmpPtr,&dummy,status); if(extverCol != 0) *status = fits_read_col_lng(gfptr,extverCol,member,1,1,0, (long*)&extver,&dummy,status); if(positionCol != 0) *status = fits_read_col_lng(gfptr,positionCol,member,1,1,0, (long*)&hdupos,&dummy,status); tmpPtr[0] = mbrLocation1; if(locationCol != 0) *status = fits_read_col_str(gfptr,locationCol,member,1,1,nstr, tmpPtr,&dummy,status); tmpPtr[0] = uri; if(uriCol != 0) *status = fits_read_col_str(gfptr,uriCol,member,1,1,nstr, tmpPtr,&dummy,status); if(*status != 0) continue; /* decide what FITS file the member HDU resides in and open the file using the fitsfile* pointer mfptr; note that this logic is rather complicated and is based primiarly upon if a URL specifier is given for the member file in the grouping table */ switch(grptype) { case GT_ID_POS: case GT_ID_REF: case GT_ID_ALL: /* no location information is given so we must assume that the member HDU resides in the same FITS file as the grouping table; if the grouping table was incorrectly constructed then this assumption will be false, but there is nothing to be done about it at this point */ *status = fits_reopen_file(gfptr,mfptr,status); break; case GT_ID_REF_URI: case GT_ID_POS_URI: case GT_ID_ALL_URI: /* The member location column exists. Determine if the member resides in the same file as the grouping table or in a separate file; open the member file in either case */ if(strlen(mbrLocation1) == 0) { /* since no location information was given we must assume that the member is in the same FITS file as the grouping table */ *status = fits_reopen_file(gfptr,mfptr,status); } else { /* make sure the location specifiation is "URL"; we cannot decode any other URI types at this time */ if(strcasecmp(uri,"URL") != 0) { *status = FILE_NOT_OPENED; sprintf(card, "Cannot open member HDU file with URI type %s (ffgmop)", uri); ffpmsg(card); continue; } /* The location string for the member is not NULL, so it does not necessially reside in the same FITS file as the grouping table. Three cases are attempted for opening the member's file in the following order: 1. The URL given for the member's file is absolute (i.e., access method supplied); try to open the member 2. The URL given for the member's file is not absolute but is an absolute file path; try to open the member as a file after the file path is converted to a host-dependent form 3. The URL given for the member's file is not absolute and is given as a relative path to the location of the grouping table's file. Create an absolute URL using the grouping table's file URL and try to open the member. If all three cases fail then an error is returned. In each case the file is first opened in read/write mode and failing that readonly mode. The following DO loop is only used as a mechanism to break (continue) when the proper file opening method is found */ do { /* CASE 1: See if the member URL is absolute (i.e., includes a access directive) and if so open the file */ if(fits_is_url_absolute(mbrLocation1)) { /* the URL must specify an access method, which implies that its an absolute reference regardless of the access method, pass the whole URL to the open function for processing */ ffpmsg("member URL is absolute, try open R/W (ffgmop)"); *status = fits_open_file(mfptr,mbrLocation1,READWRITE, status); if(*status == 0) continue; *status = 0; /* now try to open file using full URL specs in readonly mode */ ffpmsg("OK, now try to open read-only (ffgmop)"); *status = fits_open_file(mfptr,mbrLocation1,READONLY, status); /* break from DO loop regardless of status */ continue; } /* CASE 2: If we got this far then the member URL location has no access type ==> FILE:// Try to open the member file using the URL as is, i.e., assume that it is given as absolute, if it starts with a '/' character */ ffpmsg("Member URL is of type FILE (ffgmop)"); if(*mbrLocation1 == '/') { ffpmsg("Member URL specifies abs file path (ffgmop)"); /* convert the URL path to a host dependent path */ *status = fits_url2path(mbrLocation1,mbrLocation2, status); ffpmsg("Try to open member URL in R/W mode (ffgmop)"); *status = fits_open_file(mfptr,mbrLocation2,READWRITE, status); if(*status == 0) continue; *status = 0; /* now try to open file using the URL as an absolute path in readonly mode */ ffpmsg("OK, now try to open read-only (ffgmop)"); *status = fits_open_file(mfptr,mbrLocation2,READONLY, status); /* break from the Do loop regardless of the status */ continue; } /* CASE 3: If we got this far then the URL does not specify an absoulte file path or URL with access method. Since the path to the group table's file is (obviously) valid for the CWD, create a full location string for the member HDU using the grouping table URL as a basis The only problem is that the grouping table file might have two URLs, the original one used to open it and the one that points to the real file being accessed (i.e., a file accessed via HTTP but transferred to a local disk file). Have to attempt to build a URL to the member HDU file using both of these URLs if defined. */ ffpmsg("Try to open member file as relative URL (ffgmop)"); /* get the URL information for the grouping table file */ *status = fits_get_url(gfptr,grpLocation1,grpLocation2, NULL,NULL,NULL,status); /* if the "real" grouping table file URL is defined then build a full url for the member HDU file using it and try to open the member HDU file */ if(*grpLocation1) { /* make sure the group location is absolute */ if(! fits_is_url_absolute(grpLocation1) && *grpLocation1 != '/') { fits_get_cwd(cwd,status); strcat(cwd,"/"); strcat(cwd,grpLocation1); strcpy(grpLocation1,cwd); } /* create a full URL for the member HDU file */ *status = fits_relurl2url(grpLocation1,mbrLocation1, mbrLocation2,status); if(*status != 0) continue; /* if the URL does not have an access method given then translate it into a host dependent file path */ if(! fits_is_url_absolute(mbrLocation2)) { *status = fits_url2path(mbrLocation2,mbrLocation3, status); strcpy(mbrLocation2,mbrLocation3); } /* try to open the member file READWRITE */ *status = fits_open_file(mfptr,mbrLocation2,READWRITE, status); if(*status == 0) continue; *status = 0; /* now try to open in readonly mode */ ffpmsg("now try to open file as READONLY (ffgmop)"); *status = fits_open_file(mfptr,mbrLocation2,READONLY, status); if(*status == 0) continue; *status = 0; } /* if we got this far then either the "real" grouping table file URL was not defined or all attempts to open the resulting member HDU file URL failed. if the "original" grouping table file URL is defined then build a full url for the member HDU file using it and try to open the member HDU file */ if(*grpLocation2) { /* make sure the group location is absolute */ if(! fits_is_url_absolute(grpLocation2) && *grpLocation2 != '/') { fits_get_cwd(cwd,status); strcat(cwd,"/"); strcat(cwd,grpLocation2); strcpy(grpLocation2,cwd); } /* create an absolute URL for the member HDU file */ *status = fits_relurl2url(grpLocation2,mbrLocation1, mbrLocation2,status); if(*status != 0) continue; /* if the URL does not have an access method given then translate it into a host dependent file path */ if(! fits_is_url_absolute(mbrLocation2)) { *status = fits_url2path(mbrLocation2,mbrLocation3, status); strcpy(mbrLocation2,mbrLocation3); } /* try to open the member file READWRITE */ *status = fits_open_file(mfptr,mbrLocation2,READWRITE, status); if(*status == 0) continue; *status = 0; /* now try to open in readonly mode */ ffpmsg("now try to open file as READONLY (ffgmop)"); *status = fits_open_file(mfptr,mbrLocation2,READONLY, status); if(*status == 0) continue; *status = 0; } /* if we got this far then the member HDU file could not be opened using any method. Log the error. */ ffpmsg("Cannot open member HDU FITS file (ffgmop)"); *status = MEMBER_NOT_FOUND; }while(0); } break; default: /* no default action */ break; } if(*status != 0) continue; /* attempt to locate the member HDU within its FITS file as determined and opened above */ switch(grptype) { case GT_ID_POS: case GT_ID_POS_URI: /* try to find the member hdu in the the FITS file pointed to by mfptr based upon its HDU posistion value. Note that is impossible to verify if the HDU is actually the correct HDU due to a lack of information. */ *status = fits_movabs_hdu(*mfptr,(int)hdupos,&hdutype,status); break; case GT_ID_REF: case GT_ID_REF_URI: /* try to find the member hdu in the FITS file pointed to by mfptr based upon its XTENSION, EXTNAME and EXTVER keyword values */ *status = fits_movnam_hdu(*mfptr,hdutype,extname,extver,status); if(*status == BAD_HDU_NUM) { *status = MEMBER_NOT_FOUND; ffpmsg("Cannot find specified member HDU (ffgmop)"); } /* if the above function returned without error then the mfptr is pointed to the member HDU */ break; case GT_ID_ALL: case GT_ID_ALL_URI: /* if the member entry has reference information then use it (ID by reference is safer than ID by position) else use the position information */ if(strlen(xtension) > 0 && strlen(extname) > 0 && extver > 0) { /* valid reference info exists so use it */ /* try to find the member hdu in the grouping table's file */ *status = fits_movnam_hdu(*mfptr,hdutype,extname,extver,status); if(*status == BAD_HDU_NUM) { *status = MEMBER_NOT_FOUND; ffpmsg("Cannot find specified member HDU (ffgmop)"); } } else { *status = fits_movabs_hdu(*mfptr,(int)hdupos,&hdutype, status); if(*status == END_OF_FILE) *status = MEMBER_NOT_FOUND; } /* if the above function returned without error then the mfptr is pointed to the member HDU */ break; default: /* no default action */ break; } }while(0); if(*status != 0 && *mfptr != NULL) { fits_close_file(*mfptr,status); } return(*status); } /*---------------------------------------------------------------------------*/ int ffgmcp(fitsfile *gfptr, /* FITS file pointer to group */ fitsfile *mfptr, /* FITS file pointer to new member FITS file */ long member, /* member ID (row num) within grouping table */ int cpopt, /* code specifying copy options: OPT_MCP_ADD (0) ==> add copied member to the grouping table OPT_MCP_NADD (1) ==> do not add member copy to the grouping table OPT_MCP_REPL (2) ==> replace current member entry with member copy */ int *status) /* return status code */ /* copy a member HDU of a grouping table to a new FITS file. The grouping table must be the CHDU of the FITS file pointed to by gfptr. The copy of the group member shall be appended to the end of the FITS file pointed to by mfptr. If the cpopt parameter is set to OPT_MCP_ADD then the copy of the member is added to the grouping table as a new member, if OPT_MCP_NADD then the copied member is not added to the grouping table, and if OPT_MCP_REPL then the copied member is used to replace the original member. The copied member HDU also has its EXTVER value updated so that its combination of XTENSION, EXTNAME and EXVTER is unique within its new FITS file. */ { int numkeys = 0; int keypos = 0; int hdunum = 0; int hdutype = 0; int i; char *incList[] = {"GRPID#","GRPLC#"}; char extname[FLEN_VALUE]; char card[FLEN_CARD]; char comment[FLEN_COMMENT]; char keyname[FLEN_CARD]; char value[FLEN_CARD]; fitsfile *tmpfptr = NULL; if(*status != 0) return(*status); do { /* open the member HDU to be copied */ *status = fits_open_member(gfptr,member,&tmpfptr,status); if(*status != 0) continue; /* if the member is a grouping table then copy it with a call to fits_copy_group() using the "copy only the grouping table" option if it is not a grouping table then copy the hdu with fits_copy_hdu() remove all GRPIDn and GRPLCn keywords, and update the EXTVER keyword value */ /* get the member HDU's EXTNAME value */ *status = fits_read_key_str(tmpfptr,"EXTNAME",extname,comment,status); /* if no EXTNAME value was found then set the extname to a null string */ if(*status == KEY_NO_EXIST) { extname[0] = 0; *status = 0; } else if(*status != 0) continue; prepare_keyvalue(extname); /* if a grouping table then copy with fits_copy_group() */ if(strcasecmp(extname,"GROUPING") == 0) *status = fits_copy_group(tmpfptr,mfptr,OPT_GCP_GPT,status); else { /* copy the non-grouping table HDU the conventional way */ *status = fits_copy_hdu(tmpfptr,mfptr,0,status); ffgrec(mfptr,0,card,status); /* delete all the GRPIDn and GRPLCn keywords in the copied HDU */ while(*status == 0) { *status = fits_find_nextkey(mfptr,incList,2,NULL,0,card,status); *status = fits_get_hdrpos(mfptr,&numkeys,&keypos,status); /* SPR 1738 */ *status = fits_read_keyn(mfptr,keypos-1,keyname,value, comment,status); *status = fits_read_record(mfptr,keypos-1,card,status); *status = fits_delete_key(mfptr,keyname,status); } if(*status == KEY_NO_EXIST) *status = 0; if(*status != 0) continue; } /* if the member HDU does not have an EXTNAME keyword then add one with a default value */ if(strlen(extname) == 0) { if(fits_get_hdu_num(tmpfptr,&hdunum) == 1) { strcpy(extname,"PRIMARY"); *status = fits_write_key_str(mfptr,"EXTNAME",extname, "HDU was Formerly a Primary Array", status); } else { strcpy(extname,"DEFAULT"); *status = fits_write_key_str(mfptr,"EXTNAME",extname, "default EXTNAME set by CFITSIO", status); } } /* update the member HDU's EXTVER value (add it if not present) */ fits_get_hdu_num(mfptr,&hdunum); fits_get_hdu_type(mfptr,&hdutype,status); /* set the EXTVER value to 0 for now */ *status = fits_modify_key_lng(mfptr,"EXTVER",0,NULL,status); /* if the EXTVER keyword was not found then add it */ if(*status == KEY_NO_EXIST) { *status = 0; *status = fits_read_key_str(mfptr,"EXTNAME",extname,comment, status); *status = fits_insert_key_lng(mfptr,"EXTVER",0, "Extension version ID",status); } if(*status != 0) continue; /* find the first available EXTVER value for the copied HDU */ for(i = 1; fits_movnam_hdu(mfptr,hdutype,extname,i,status) == 0; ++i); *status = 0; fits_movabs_hdu(mfptr,hdunum,&hdutype,status); /* reset the copied member HDUs EXTVER value */ *status = fits_modify_key_lng(mfptr,"EXTVER",(long)i,NULL,status); /* perform member copy operations that are dependent upon the cpopt parameter value */ switch(cpopt) { case OPT_MCP_ADD: /* add the copied member to the grouping table, leaving the entry for the original member in place */ *status = fits_add_group_member(gfptr,mfptr,0,status); break; case OPT_MCP_NADD: /* nothing to do for this copy option */ break; case OPT_MCP_REPL: /* remove the original member from the grouping table and add the copied member in its place */ *status = fits_remove_member(gfptr,member,OPT_RM_ENTRY,status); *status = fits_add_group_member(gfptr,mfptr,0,status); break; default: *status = BAD_OPTION; ffpmsg("Invalid value specified for the cmopt parameter (ffgmcp)"); break; } }while(0); if(tmpfptr != NULL) { fits_close_file(tmpfptr,status); } return(*status); } /*---------------------------------------------------------------------------*/ int ffgmtf(fitsfile *infptr, /* FITS file pointer to source grouping table */ fitsfile *outfptr, /* FITS file pointer to target grouping table */ long member, /* member ID within source grouping table */ int tfopt, /* code specifying transfer opts: OPT_MCP_ADD (0) ==> copy member to dest. OPT_MCP_MOV (3) ==> move member to dest. */ int *status) /* return status code */ /* transfer a group member from one grouping table to another. The source grouping table must be the CHDU of the fitsfile pointed to by infptr, and the destination grouping table must be the CHDU of the fitsfile to by outfptr. If the tfopt parameter is OPT_MCP_ADD then the member is made a member of the target group and remains a member of the source group. If the tfopt parameter is OPT_MCP_MOV then the member is deleted from the source group after the transfer to the destination group. The member to be transfered is identified by its row number within the source grouping table. */ { fitsfile *mfptr = NULL; if(*status != 0) return(*status); if(tfopt != OPT_MCP_MOV && tfopt != OPT_MCP_ADD) { *status = BAD_OPTION; ffpmsg("Invalid value specified for the tfopt parameter (ffgmtf)"); } else { /* open the member of infptr to be transfered */ *status = fits_open_member(infptr,member,&mfptr,status); /* add the member to the outfptr grouping table */ *status = fits_add_group_member(outfptr,mfptr,0,status); /* close the member HDU */ *status = fits_close_file(mfptr,status); /* if the tfopt is "move member" then remove it from the infptr grouping table */ if(tfopt == OPT_MCP_MOV) *status = fits_remove_member(infptr,member,OPT_RM_ENTRY,status); } return(*status); } /*---------------------------------------------------------------------------*/ int ffgmrm(fitsfile *gfptr, /* FITS file pointer to group table */ long member, /* member ID (row num) in the group */ int rmopt, /* code specifying the delete option: OPT_RM_ENTRY ==> delete the member entry OPT_RM_MBR ==> delete entry and member HDU */ int *status) /* return status code */ /* remove a member HDU from a grouping table. The fitsfile pointer gfptr must be positioned with the grouping table as the CHDU, and the member to delete is identified by its row number in the table (first member == 1). The rmopt parameter determines if the member entry is deleted from the grouping table (in which case GRPIDn and GRPLCn keywords in the member HDU's header shall be updated accordingly) or if the member HDU shall itself be removed from its FITS file. */ { int found; int hdutype = 0; int index; int iomode = 0; long i; long ngroups = 0; long nmembers = 0; long groupExtver = 0; long grpid = 0; char grpLocation1[FLEN_FILENAME]; char grpLocation2[FLEN_FILENAME]; char grpLocation3[FLEN_FILENAME]; char cwd[FLEN_FILENAME]; char keyword[FLEN_KEYWORD]; /* SPR 1738 This can now be longer */ char grplc[FLEN_FILENAME]; char *tgrplc; char keyvalue[FLEN_VALUE]; char card[FLEN_CARD]; char *editLocation; char mrootname[FLEN_FILENAME], grootname[FLEN_FILENAME]; fitsfile *mfptr = NULL; if(*status != 0) return(*status); do { /* make sure the grouping table can be modified before proceeding */ fits_file_mode(gfptr,&iomode,status); if(iomode != READWRITE) { ffpmsg("cannot modify grouping table (ffgtam)"); *status = BAD_GROUP_DETACH; continue; } /* open the group member to be deleted and get its IOstatus*/ *status = fits_open_member(gfptr,member,&mfptr,status); *status = fits_file_mode(mfptr,&iomode,status); /* if the member HDU is to be deleted then call fits_unlink_member() to remove it from all groups to which it belongs (including this one) and then delete it. Note that if the member is a grouping table then we have to recursively call fits_remove_member() for each member of the member before we delete the member itself. */ if(rmopt == OPT_RM_MBR) { /* cannot delete a PHDU */ if(fits_get_hdu_num(mfptr,&hdutype) == 1) { *status = BAD_HDU_NUM; continue; } /* determine if the member HDU is itself a grouping table */ *status = fits_read_key_str(mfptr,"EXTNAME",keyvalue,card,status); /* if no EXTNAME is found then the HDU cannot be a grouping table */ if(*status == KEY_NO_EXIST) { keyvalue[0] = 0; *status = 0; } prepare_keyvalue(keyvalue); /* Any other error is a reason to abort */ if(*status != 0) continue; /* if the EXTNAME == GROUPING then the member is a grouping table */ if(strcasecmp(keyvalue,"GROUPING") == 0) { /* remove each of the grouping table members */ *status = fits_get_num_members(mfptr,&nmembers,status); for(i = nmembers; i > 0 && *status == 0; --i) *status = fits_remove_member(mfptr,i,OPT_RM_ENTRY,status); if(*status != 0) continue; } /* unlink the member HDU from all groups that contain it */ *status = ffgmul(mfptr,0,status); if(*status != 0) continue; /* reset the grouping table HDU struct */ fits_set_hdustruc(gfptr,status); /* delete the member HDU */ if(iomode != READONLY) *status = fits_delete_hdu(mfptr,&hdutype,status); } else if(rmopt == OPT_RM_ENTRY) { /* The member HDU is only to be removed as an entry from this grouping table. Actions are (1) find the GRPIDn/GRPLCn keywords that link the member to the grouping table, (2) remove the GRPIDn/GRPLCn keyword from the member HDU header and (3) remove the member entry from the grouping table */ /* there is no need to seach for and remove the GRPIDn/GRPLCn keywords from the member HDU if it has not been opened in READWRITE mode */ if(iomode == READWRITE) { /* determine the group EXTVER value of the grouping table; if the member HDU and grouping table HDU do not reside in the same file then set the groupExtver value to its negative */ *status = fits_read_key_lng(gfptr,"EXTVER",&groupExtver,card, status); /* Now, if either the Fptr values are the same, or the root filenames are the same, then assume these refer to the same file. */ fits_parse_rootname(mfptr->Fptr->filename, mrootname, status); fits_parse_rootname(gfptr->Fptr->filename, grootname, status); if((mfptr->Fptr != gfptr->Fptr) && strncmp(mrootname, grootname, FLEN_FILENAME)) groupExtver = -1*groupExtver; /* retrieve the URLs for the grouping table; note that it is possible that the grouping table file has two URLs, the one used to open it and the "real" one pointing to the actual file being accessed */ *status = fits_get_url(gfptr,grpLocation1,grpLocation2,NULL, NULL,NULL,status); if(*status != 0) continue; /* if either of the group location strings specify a relative file path then convert them into absolute file paths */ *status = fits_get_cwd(cwd,status); if(*grpLocation1 != 0 && *grpLocation1 != '/' && !fits_is_url_absolute(grpLocation1)) { strcpy(grpLocation3,cwd); strcat(grpLocation3,"/"); strcat(grpLocation3,grpLocation1); fits_clean_url(grpLocation3,grpLocation1,status); } if(*grpLocation2 != 0 && *grpLocation2 != '/' && !fits_is_url_absolute(grpLocation2)) { strcpy(grpLocation3,cwd); strcat(grpLocation3,"/"); strcat(grpLocation3,grpLocation2); fits_clean_url(grpLocation3,grpLocation2,status); } /* determine the number of groups to which the member HDU belongs */ *status = fits_get_num_groups(mfptr,&ngroups,status); /* reset the HDU keyword position counter to the beginning */ *status = ffgrec(mfptr,0,card,status); /* loop over all the GRPIDn keywords in the member HDU header and find the appropriate GRPIDn and GRPLCn keywords that identify it as belonging to the group */ for(index = 1, found = 0; index <= ngroups && *status == 0 && !found; ++index) { /* read the next GRPIDn keyword in the series */ sprintf(keyword,"GRPID%d",index); *status = fits_read_key_lng(mfptr,keyword,&grpid,card, status); if(*status != 0) continue; /* grpid value == group EXTVER value then we could have a match */ if(grpid == groupExtver && grpid > 0) { /* if GRPID is positive then its a match because both the member HDU and grouping table HDU reside in the same FITS file */ found = index; } else if(grpid == groupExtver && grpid < 0) { /* have to look at the GRPLCn value to determine a match because the member HDU and grouping table HDU reside in different FITS files */ sprintf(keyword,"GRPLC%d",index); /* SPR 1738 */ *status = fits_read_key_longstr(mfptr,keyword,&tgrplc, card, status); if (0 == *status) { strcpy(grplc,tgrplc); free(tgrplc); } if(*status == KEY_NO_EXIST) { /* no GRPLCn keyword value found ==> grouping convention not followed; nothing we can do about it, so just continue */ sprintf(card,"No GRPLC%d found for GRPID%d", index,index); ffpmsg(card); *status = 0; continue; } else if (*status != 0) continue; /* construct the URL for the GRPLCn value */ prepare_keyvalue(grplc); /* if the grplc value specifies a relative path then turn it into a absolute file path for comparison purposes */ if(*grplc != 0 && !fits_is_url_absolute(grplc) && *grplc != '/') { /* No, wrong, strcpy(grpLocation3,cwd); should be */ *status = fits_file_name(mfptr,grpLocation3,status); /* Remove everything after the last / */ if (NULL != (editLocation = strrchr(grpLocation3,'/'))) { *editLocation = '\0'; } strcat(grpLocation3,"/"); strcat(grpLocation3,grplc); *status = fits_clean_url(grpLocation3,grplc, status); } /* if the absolute value of GRPIDn is equal to the EXTVER value of the grouping table and (one of the possible two) grouping table file URL matches the GRPLCn keyword value then we hava a match */ if(strcmp(grplc,grpLocation1) == 0 || strcmp(grplc,grpLocation2) == 0) found = index; } } /* if found == 0 (false) after the above search then we assume that it is due to an inpromper updating of the GRPIDn and GRPLCn keywords in the member header ==> nothing to delete in the header. Else delete the GRPLCn and GRPIDn keywords that identify the member HDU with the group HDU and re-enumerate the remaining GRPIDn and GRPLCn keywords */ if(found != 0) { sprintf(keyword,"GRPID%d",found); *status = fits_delete_key(mfptr,keyword,status); sprintf(keyword,"GRPLC%d",found); *status = fits_delete_key(mfptr,keyword,status); *status = 0; /* call fits_get_num_groups() to re-enumerate the GRPIDn */ *status = fits_get_num_groups(mfptr,&ngroups,status); } } /* finally, remove the member entry from the current grouping table pointed to by gfptr */ *status = fits_delete_rows(gfptr,member,1,status); } else { *status = BAD_OPTION; ffpmsg("Invalid value specified for the rmopt parameter (ffgmrm)"); } }while(0); if(mfptr != NULL) { fits_close_file(mfptr,status); } return(*status); } /*--------------------------------------------------------------------------- Grouping Table support functions ---------------------------------------------------------------------------*/ int ffgtgc(fitsfile *gfptr, /* pointer to the grouping table */ int *xtensionCol, /* column ID of the MEMBER_XTENSION column */ int *extnameCol, /* column ID of the MEMBER_NAME column */ int *extverCol, /* column ID of the MEMBER_VERSION column */ int *positionCol, /* column ID of the MEMBER_POSITION column */ int *locationCol, /* column ID of the MEMBER_LOCATION column */ int *uriCol, /* column ID of the MEMBER_URI_TYPE column */ int *grptype, /* group structure type code specifying the grouping table columns that are defined: GT_ID_ALL_URI (0) ==> all columns defined GT_ID_REF (1) ==> reference cols only GT_ID_POS (2) ==> position col only GT_ID_ALL (3) ==> ref & pos cols GT_ID_REF_URI (11) ==> ref & loc cols GT_ID_POS_URI (12) ==> pos & loc cols */ int *status) /* return status code */ /* examine the grouping table pointed to by gfptr and determine the column index ID of each possible grouping column. If a column is not found then an index of 0 is returned. the grptype parameter returns the structure of the grouping table ==> what columns are defined. */ { char keyvalue[FLEN_VALUE]; char comment[FLEN_COMMENT]; if(*status != 0) return(*status); do { /* if the HDU does not have an extname of "GROUPING" then it is not a grouping table */ *status = fits_read_key_str(gfptr,"EXTNAME",keyvalue,comment,status); if(*status == KEY_NO_EXIST) { *status = NOT_GROUP_TABLE; ffpmsg("Specified HDU is not a Grouping Table (ffgtgc)"); } if(*status != 0) continue; prepare_keyvalue(keyvalue); if(strcasecmp(keyvalue,"GROUPING") != 0) { *status = NOT_GROUP_TABLE; continue; } /* search for the MEMBER_XTENSION, MEMBER_NAME, MEMBER_VERSION, MEMBER_POSITION, MEMBER_LOCATION and MEMBER_URI_TYPE columns and determine their column index ID */ *status = fits_get_colnum(gfptr,CASESEN,"MEMBER_XTENSION",xtensionCol, status); if(*status == COL_NOT_FOUND) { *status = 0; *xtensionCol = 0; } if(*status != 0) continue; *status = fits_get_colnum(gfptr,CASESEN,"MEMBER_NAME",extnameCol,status); if(*status == COL_NOT_FOUND) { *status = 0; *extnameCol = 0; } if(*status != 0) continue; *status = fits_get_colnum(gfptr,CASESEN,"MEMBER_VERSION",extverCol, status); if(*status == COL_NOT_FOUND) { *status = 0; *extverCol = 0; } if(*status != 0) continue; *status = fits_get_colnum(gfptr,CASESEN,"MEMBER_POSITION",positionCol, status); if(*status == COL_NOT_FOUND) { *status = 0; *positionCol = 0; } if(*status != 0) continue; *status = fits_get_colnum(gfptr,CASESEN,"MEMBER_LOCATION",locationCol, status); if(*status == COL_NOT_FOUND) { *status = 0; *locationCol = 0; } if(*status != 0) continue; *status = fits_get_colnum(gfptr,CASESEN,"MEMBER_URI_TYPE",uriCol, status); if(*status == COL_NOT_FOUND) { *status = 0; *uriCol = 0; } if(*status != 0) continue; /* determine the type of grouping table structure used by this grouping table and record it in the grptype parameter */ if(*xtensionCol && *extnameCol && *extverCol && *positionCol && *locationCol && *uriCol) *grptype = GT_ID_ALL_URI; else if(*xtensionCol && *extnameCol && *extverCol && *locationCol && *uriCol) *grptype = GT_ID_REF_URI; else if(*xtensionCol && *extnameCol && *extverCol && *positionCol) *grptype = GT_ID_ALL; else if(*xtensionCol && *extnameCol && *extverCol) *grptype = GT_ID_REF; else if(*positionCol && *locationCol && *uriCol) *grptype = GT_ID_POS_URI; else if(*positionCol) *grptype = GT_ID_POS; else *status = NOT_GROUP_TABLE; }while(0); /* if the table contained more than one column with a reserved name then this cannot be considered a vailid grouping table */ if(*status == COL_NOT_UNIQUE) { *status = NOT_GROUP_TABLE; ffpmsg("Specified HDU has multipule Group table cols defined (ffgtgc)"); } return(*status); } /*****************************************************************************/ int ffgtdc(int grouptype, /* code specifying the type of grouping table information: GT_ID_ALL_URI 0 ==> defualt (all columns) GT_ID_REF 1 ==> ID by reference GT_ID_POS 2 ==> ID by position GT_ID_ALL 3 ==> ID by ref. and position GT_ID_REF_URI 11 ==> (1) + URI info GT_ID_POS_URI 12 ==> (2) + URI info */ int xtensioncol, /* does MEMBER_XTENSION already exist? */ int extnamecol, /* does MEMBER_NAME aleady exist? */ int extvercol, /* does MEMBER_VERSION already exist? */ int positioncol, /* does MEMBER_POSITION already exist? */ int locationcol, /* does MEMBER_LOCATION already exist? */ int uricol, /* does MEMBER_URI_TYPE aleardy exist? */ char *ttype[], /* array of grouping table column TTYPE names to define (if *col var false) */ char *tform[], /* array of grouping table column TFORM values to define (if*col variable false) */ int *ncols, /* number of TTYPE and TFORM values returned */ int *status) /* return status code */ /* create the TTYPE and TFORM values for the grouping table according to the value of the grouptype parameter and the values of the *col flags. The resulting TTYPE and TFORM are returned in ttype[] and tform[] respectively. The number of TTYPE and TFORMs returned is given by ncols. Both the TTYPE[] and TTFORM[] arrays must contain enough pre-allocated strings to hold the returned information. */ { int i = 0; char xtension[] = "MEMBER_XTENSION"; char xtenTform[] = "8A"; char name[] = "MEMBER_NAME"; char nameTform[] = "32A"; char version[] = "MEMBER_VERSION"; char verTform[] = "1J"; char position[] = "MEMBER_POSITION"; char posTform[] = "1J"; char URI[] = "MEMBER_URI_TYPE"; char URITform[] = "3A"; char location[] = "MEMBER_LOCATION"; /* SPR 01720, move from 160A to 256A */ char locTform[] = "256A"; if(*status != 0) return(*status); switch(grouptype) { case GT_ID_ALL_URI: if(xtensioncol == 0) { strcpy(ttype[i],xtension); strcpy(tform[i],xtenTform); ++i; } if(extnamecol == 0) { strcpy(ttype[i],name); strcpy(tform[i],nameTform); ++i; } if(extvercol == 0) { strcpy(ttype[i],version); strcpy(tform[i],verTform); ++i; } if(positioncol == 0) { strcpy(ttype[i],position); strcpy(tform[i],posTform); ++i; } if(locationcol == 0) { strcpy(ttype[i],location); strcpy(tform[i],locTform); ++i; } if(uricol == 0) { strcpy(ttype[i],URI); strcpy(tform[i],URITform); ++i; } break; case GT_ID_REF: if(xtensioncol == 0) { strcpy(ttype[i],xtension); strcpy(tform[i],xtenTform); ++i; } if(extnamecol == 0) { strcpy(ttype[i],name); strcpy(tform[i],nameTform); ++i; } if(extvercol == 0) { strcpy(ttype[i],version); strcpy(tform[i],verTform); ++i; } break; case GT_ID_POS: if(positioncol == 0) { strcpy(ttype[i],position); strcpy(tform[i],posTform); ++i; } break; case GT_ID_ALL: if(xtensioncol == 0) { strcpy(ttype[i],xtension); strcpy(tform[i],xtenTform); ++i; } if(extnamecol == 0) { strcpy(ttype[i],name); strcpy(tform[i],nameTform); ++i; } if(extvercol == 0) { strcpy(ttype[i],version); strcpy(tform[i],verTform); ++i; } if(positioncol == 0) { strcpy(ttype[i],position); strcpy(tform[i], posTform); ++i; } break; case GT_ID_REF_URI: if(xtensioncol == 0) { strcpy(ttype[i],xtension); strcpy(tform[i],xtenTform); ++i; } if(extnamecol == 0) { strcpy(ttype[i],name); strcpy(tform[i],nameTform); ++i; } if(extvercol == 0) { strcpy(ttype[i],version); strcpy(tform[i],verTform); ++i; } if(locationcol == 0) { strcpy(ttype[i],location); strcpy(tform[i],locTform); ++i; } if(uricol == 0) { strcpy(ttype[i],URI); strcpy(tform[i],URITform); ++i; } break; case GT_ID_POS_URI: if(positioncol == 0) { strcpy(ttype[i],position); strcpy(tform[i],posTform); ++i; } if(locationcol == 0) { strcpy(ttype[i],location); strcpy(tform[i],locTform); ++i; } if(uricol == 0) { strcpy(ttype[i],URI); strcpy(tform[i],URITform); ++i; } break; default: *status = BAD_OPTION; ffpmsg("Invalid value specified for the grouptype parameter (ffgtdc)"); break; } *ncols = i; return(*status); } /*****************************************************************************/ int ffgmul(fitsfile *mfptr, /* pointer to the grouping table member HDU */ int rmopt, /* 0 ==> leave GRPIDn/GRPLCn keywords, 1 ==> remove GRPIDn/GRPLCn keywords */ int *status) /* return status code */ /* examine all the GRPIDn and GRPLCn keywords in the member HDUs header and remove the member from the grouping tables referenced; This effectively "unlinks" the member from all of its groups. The rmopt specifies if the GRPIDn/GRPLCn keywords are to be removed from the member HDUs header after the unlinking. */ { int memberPosition = 0; int iomode; long index; long ngroups = 0; long memberExtver = 0; long memberID = 0; char mbrLocation1[FLEN_FILENAME]; char mbrLocation2[FLEN_FILENAME]; char memberHDUtype[FLEN_VALUE]; char memberExtname[FLEN_VALUE]; char keyword[FLEN_KEYWORD]; char card[FLEN_CARD]; fitsfile *gfptr = NULL; if(*status != 0) return(*status); do { /* determine location parameters of the member HDU; note that default values are supplied if the expected keywords are not found */ *status = fits_read_key_str(mfptr,"XTENSION",memberHDUtype,card,status); if(*status == KEY_NO_EXIST) { strcpy(memberHDUtype,"PRIMARY"); *status = 0; } prepare_keyvalue(memberHDUtype); *status = fits_read_key_lng(mfptr,"EXTVER",&memberExtver,card,status); if(*status == KEY_NO_EXIST) { memberExtver = 1; *status = 0; } *status = fits_read_key_str(mfptr,"EXTNAME",memberExtname,card,status); if(*status == KEY_NO_EXIST) { memberExtname[0] = 0; *status = 0; } prepare_keyvalue(memberExtname); fits_get_hdu_num(mfptr,&memberPosition); *status = fits_get_url(mfptr,mbrLocation1,mbrLocation2,NULL,NULL, NULL,status); if(*status != 0) continue; /* open each grouping table linked to this HDU and remove the member from the grouping tables */ *status = fits_get_num_groups(mfptr,&ngroups,status); /* loop over each group linked to the member HDU */ for(index = 1; index <= ngroups && *status == 0; ++index) { /* open the (index)th group linked to the member HDU */ *status = fits_open_group(mfptr,index,&gfptr,status); /* if the group could not be opened then just skip it */ if(*status != 0) { *status = 0; sprintf(card,"Cannot open the %dth group table (ffgmul)", (int)index); ffpmsg(card); continue; } /* make sure the grouping table can be modified before proceeding */ fits_file_mode(gfptr,&iomode,status); if(iomode != READWRITE) { sprintf(card,"The %dth group cannot be modified (ffgtam)", (int)index); ffpmsg(card); continue; } /* try to find the member's row within the grouping table; first try using the member HDU file's "real" URL string then try using its originally opened URL string if either string exist */ memberID = 0; if(strlen(mbrLocation1) != 0) { *status = ffgmf(gfptr,memberHDUtype,memberExtname,memberExtver, memberPosition,mbrLocation1,&memberID,status); } if(*status == MEMBER_NOT_FOUND && strlen(mbrLocation2) != 0) { *status = 0; *status = ffgmf(gfptr,memberHDUtype,memberExtname,memberExtver, memberPosition,mbrLocation2,&memberID,status); } /* if the member was found then delete it from the grouping table */ if(*status == 0) *status = fits_delete_rows(gfptr,memberID,1,status); /* continue the loop over all member groups even if an error was generated */ if(*status == MEMBER_NOT_FOUND) { ffpmsg("cannot locate member's entry in group table (ffgmul)"); } *status = 0; /* close the file pointed to by gfptr if it is non NULL to prepare for the next loop iterration */ if(gfptr != NULL) { fits_close_file(gfptr,status); gfptr = NULL; } } if(*status != 0) continue; /* if rmopt is non-zero then find and delete the GRPIDn/GRPLCn keywords from the member HDU header */ if(rmopt != 0) { fits_file_mode(mfptr,&iomode,status); if(iomode == READONLY) { ffpmsg("Cannot modify member HDU, opened READONLY (ffgmul)"); continue; } /* delete all the GRPIDn/GRPLCn keywords */ for(index = 1; index <= ngroups && *status == 0; ++index) { sprintf(keyword,"GRPID%d",(int)index); fits_delete_key(mfptr,keyword,status); sprintf(keyword,"GRPLC%d",(int)index); fits_delete_key(mfptr,keyword,status); if(*status == KEY_NO_EXIST) *status = 0; } } }while(0); /* make sure the gfptr has been closed */ if(gfptr != NULL) { fits_close_file(gfptr,status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffgmf(fitsfile *gfptr, /* pointer to grouping table HDU to search */ char *xtension, /* XTENSION value for member HDU */ char *extname, /* EXTNAME value for member HDU */ int extver, /* EXTVER value for member HDU */ int position, /* HDU position value for member HDU */ char *location, /* FITS file location value for member HDU */ long *member, /* member HDU ID within group table (if found) */ int *status) /* return status code */ /* try to find the entry for the member HDU defined by the xtension, extname, extver, position, and location parameters within the grouping table pointed to by gfptr. If the member HDU is found then its ID (row number) within the grouping table is returned in the member variable; if not found then member is returned with a value of 0 and the status return code will be set to MEMBER_NOT_FOUND. Note that the member HDU postion information is used to obtain a member match only if the grouping table type is GT_ID_POS_URI or GT_ID_POS. This is because the position information can become invalid much more easily then the reference information for a group member. */ { int xtensionCol,extnameCol,extverCol,positionCol,locationCol,uriCol; int mposition = 0; int grptype; int dummy; int i; long nmembers = 0; long mextver = 0; char charBuff1[FLEN_FILENAME]; char charBuff2[FLEN_FILENAME]; char tmpLocation[FLEN_FILENAME]; char mbrLocation1[FLEN_FILENAME]; char mbrLocation2[FLEN_FILENAME]; char mbrLocation3[FLEN_FILENAME]; char grpLocation1[FLEN_FILENAME]; char grpLocation2[FLEN_FILENAME]; char cwd[FLEN_FILENAME]; char nstr[] = {'\0'}; char *tmpPtr[2]; if(*status != 0) return(*status); *member = 0; tmpPtr[0] = charBuff1; tmpPtr[1] = charBuff2; if(*status != 0) return(*status); /* if the passed LOCATION value is not an absolute URL then turn it into an absolute path */ if(location == NULL) { *tmpLocation = 0; } else if(*location == 0) { *tmpLocation = 0; } else if(!fits_is_url_absolute(location)) { fits_path2url(location,tmpLocation,status); if(*tmpLocation != '/') { fits_get_cwd(cwd,status); strcat(cwd,"/"); strcat(cwd,tmpLocation); fits_clean_url(cwd,tmpLocation,status); } } else strcpy(tmpLocation,location); /* retrieve the Grouping Convention reserved column positions within the grouping table */ *status = ffgtgc(gfptr,&xtensionCol,&extnameCol,&extverCol,&positionCol, &locationCol,&uriCol,&grptype,status); /* retrieve the number of group members */ *status = fits_get_num_members(gfptr,&nmembers,status); /* loop over all grouping table rows until the member HDU is found */ for(i = 1; i <= nmembers && *member == 0 && *status == 0; ++i) { if(xtensionCol != 0) { fits_read_col_str(gfptr,xtensionCol,i,1,1,nstr,tmpPtr,&dummy,status); if(strcasecmp(tmpPtr[0],xtension) != 0) continue; } if(extnameCol != 0) { fits_read_col_str(gfptr,extnameCol,i,1,1,nstr,tmpPtr,&dummy,status); if(strcasecmp(tmpPtr[0],extname) != 0) continue; } if(extverCol != 0) { fits_read_col_lng(gfptr,extverCol,i,1,1,0, (long*)&mextver,&dummy,status); if(extver != mextver) continue; } /* note we only use postionCol if we have to */ if(positionCol != 0 && (grptype == GT_ID_POS || grptype == GT_ID_POS_URI)) { fits_read_col_int(gfptr,positionCol,i,1,1,0, &mposition,&dummy,status); if(position != mposition) continue; } /* if no location string was passed to the function then assume that the calling application does not wish to use it as a comparision critera ==> if we got this far then we have a match */ if(location == NULL) { ffpmsg("NULL Location string given ==> ingore location (ffgmf)"); *member = i; continue; } /* if the grouping table MEMBER_LOCATION column exists then read the location URL for the member, else set the location string to a zero-length string for subsequent comparisions */ if(locationCol != 0) { fits_read_col_str(gfptr,locationCol,i,1,1,nstr,tmpPtr,&dummy,status); strcpy(mbrLocation1,tmpPtr[0]); *mbrLocation2 = 0; } else *mbrLocation1 = 0; /* if the member location string from the grouping table is zero length (either implicitly or explicitly) then assume that the member HDU is in the same file as the grouping table HDU; retrieve the possible URL values of the grouping table HDU file */ if(*mbrLocation1 == 0) { /* retrieve the possible URLs of the grouping table file */ *status = fits_get_url(gfptr,mbrLocation1,mbrLocation2,NULL,NULL, NULL,status); /* if non-NULL, make sure the first URL is absolute or a full path */ if(*mbrLocation1 != 0 && !fits_is_url_absolute(mbrLocation1) && *mbrLocation1 != '/') { fits_get_cwd(cwd,status); strcat(cwd,"/"); strcat(cwd,mbrLocation1); fits_clean_url(cwd,mbrLocation1,status); } /* if non-NULL, make sure the first URL is absolute or a full path */ if(*mbrLocation2 != 0 && !fits_is_url_absolute(mbrLocation2) && *mbrLocation2 != '/') { fits_get_cwd(cwd,status); strcat(cwd,"/"); strcat(cwd,mbrLocation2); fits_clean_url(cwd,mbrLocation2,status); } } /* if the member location was specified, then make sure that it is either an absolute URL or specifies a full path */ else if(!fits_is_url_absolute(mbrLocation1) && *mbrLocation1 != '/') { strcpy(mbrLocation2,mbrLocation1); /* get the possible URLs for the grouping table file */ *status = fits_get_url(gfptr,grpLocation1,grpLocation2,NULL,NULL, NULL,status); if(*grpLocation1 != 0) { /* make sure the first grouping table URL is absolute */ if(!fits_is_url_absolute(grpLocation1) && *grpLocation1 != '/') { fits_get_cwd(cwd,status); strcat(cwd,"/"); strcat(cwd,grpLocation1); fits_clean_url(cwd,grpLocation1,status); } /* create an absoute URL for the member */ fits_relurl2url(grpLocation1,mbrLocation1,mbrLocation3,status); /* if URL construction succeeded then copy it to the first location string; else set the location string to empty */ if(*status == 0) { strcpy(mbrLocation1,mbrLocation3); } else if(*status == URL_PARSE_ERROR) { *status = 0; *mbrLocation1 = 0; } } else *mbrLocation1 = 0; if(*grpLocation2 != 0) { /* make sure the second grouping table URL is absolute */ if(!fits_is_url_absolute(grpLocation2) && *grpLocation2 != '/') { fits_get_cwd(cwd,status); strcat(cwd,"/"); strcat(cwd,grpLocation2); fits_clean_url(cwd,grpLocation2,status); } /* create an absolute URL for the member */ fits_relurl2url(grpLocation2,mbrLocation2,mbrLocation3,status); /* if URL construction succeeded then copy it to the second location string; else set the location string to empty */ if(*status == 0) { strcpy(mbrLocation2,mbrLocation3); } else if(*status == URL_PARSE_ERROR) { *status = 0; *mbrLocation2 = 0; } } else *mbrLocation2 = 0; } /* compare the passed member HDU file location string with the (possibly two) member location strings to see if there is a match */ if(strcmp(mbrLocation1,tmpLocation) != 0 && strcmp(mbrLocation2,tmpLocation) != 0 ) continue; /* if we made it this far then a match to the member HDU was found */ *member = i; } /* if a match was not found then set the return status code */ if(*member == 0 && *status == 0) { *status = MEMBER_NOT_FOUND; ffpmsg("Cannot find specified member HDU (ffgmf)"); } return(*status); } /*-------------------------------------------------------------------------- Recursive Group Functions --------------------------------------------------------------------------*/ int ffgtrmr(fitsfile *gfptr, /* FITS file pointer to group */ HDUtracker *HDU, /* list of processed HDUs */ int *status) /* return status code */ /* recursively remove a grouping table and all its members. Each member of the grouping table pointed to by gfptr it processed. If the member is itself a grouping table then ffgtrmr() is recursively called to process all of its members. The HDUtracker struct *HDU is used to make sure a member is not processed twice, thus avoiding an infinite loop (e.g., a grouping table contains itself as a member). */ { int i; int hdutype; long nmembers = 0; char keyvalue[FLEN_VALUE]; char comment[FLEN_COMMENT]; fitsfile *mfptr = NULL; if(*status != 0) return(*status); /* get the number of members contained by this grouping table */ *status = fits_get_num_members(gfptr,&nmembers,status); /* loop over all group members and delete them */ for(i = nmembers; i > 0 && *status == 0; --i) { /* open the member HDU */ *status = fits_open_member(gfptr,i,&mfptr,status); /* if the member cannot be opened then just skip it and continue */ if(*status == MEMBER_NOT_FOUND) { *status = 0; continue; } /* Any other error is a reason to abort */ if(*status != 0) continue; /* add the member HDU to the HDUtracker struct */ *status = fftsad(mfptr,HDU,NULL,NULL); /* status == HDU_ALREADY_TRACKED ==> HDU has already been processed */ if(*status == HDU_ALREADY_TRACKED) { *status = 0; fits_close_file(mfptr,status); continue; } else if(*status != 0) continue; /* determine if the member HDU is itself a grouping table */ *status = fits_read_key_str(mfptr,"EXTNAME",keyvalue,comment,status); /* if no EXTNAME is found then the HDU cannot be a grouping table */ if(*status == KEY_NO_EXIST) { *status = 0; keyvalue[0] = 0; } prepare_keyvalue(keyvalue); /* Any other error is a reason to abort */ if(*status != 0) continue; /* if the EXTNAME == GROUPING then the member is a grouping table and we must call ffgtrmr() to process its members */ if(strcasecmp(keyvalue,"GROUPING") == 0) *status = ffgtrmr(mfptr,HDU,status); /* unlink all the grouping tables that contain this HDU as a member and then delete the HDU (if not a PHDU) */ if(fits_get_hdu_num(mfptr,&hdutype) == 1) *status = ffgmul(mfptr,1,status); else { *status = ffgmul(mfptr,0,status); *status = fits_delete_hdu(mfptr,&hdutype,status); } /* close the fitsfile pointer */ fits_close_file(mfptr,status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffgtcpr(fitsfile *infptr, /* input FITS file pointer */ fitsfile *outfptr, /* output FITS file pointer */ int cpopt, /* code specifying copy options: OPT_GCP_GPT (0) ==> cp only grouping table OPT_GCP_ALL (2) ==> recusrively copy members and their members (if groups) */ HDUtracker *HDU, /* list of already copied HDUs */ int *status) /* return status code */ /* copy a Group to a new FITS file. If the cpopt parameter is set to OPT_GCP_GPT (copy grouping table only) then the existing members have their GRPIDn and GRPLCn keywords updated to reflect the existance of the new group, since they now belong to another group. If cpopt is set to OPT_GCP_ALL (copy grouping table and members recursively) then the original members are not updated; the new grouping table is modified to include only the copied member HDUs and not the original members. Note that this function is recursive. When copt is OPT_GCP_ALL it will call itself whenever a member HDU of the current grouping table is itself a grouping table (i.e., EXTNAME = 'GROUPING'). */ { int i; int nexclude = 8; int hdutype = 0; int groupHDUnum = 0; int numkeys = 0; int keypos = 0; int startSearch = 0; int newPosition = 0; long nmembers = 0; long tfields = 0; long newTfields = 0; char keyword[FLEN_KEYWORD]; char keyvalue[FLEN_VALUE]; char card[FLEN_CARD]; char comment[FLEN_CARD]; char *tkeyvalue; char *includeList[] = {"*"}; char *excludeList[] = {"EXTNAME","EXTVER","GRPNAME","GRPID#","GRPLC#", "THEAP","TDIM#","T????#"}; fitsfile *mfptr = NULL; if(*status != 0) return(*status); do { /* create a new grouping table in the FITS file pointed to by outptr */ *status = fits_get_num_members(infptr,&nmembers,status); *status = fits_read_key_str(infptr,"GRPNAME",keyvalue,card,status); if(*status == KEY_NO_EXIST) { keyvalue[0] = 0; *status = 0; } prepare_keyvalue(keyvalue); *status = fits_create_group(outfptr,keyvalue,GT_ID_ALL_URI,status); /* save the new grouping table's HDU position for future use */ fits_get_hdu_num(outfptr,&groupHDUnum); /* update the HDUtracker struct with the grouping table's new position */ *status = fftsud(infptr,HDU,groupHDUnum,NULL); /* Now populate the copied grouping table depending upon the copy option parameter value */ switch(cpopt) { /* for the "copy grouping table only" option we only have to add the members of the original grouping table to the new grouping table */ case OPT_GCP_GPT: for(i = 1; i <= nmembers && *status == 0; ++i) { *status = fits_open_member(infptr,i,&mfptr,status); *status = fits_add_group_member(outfptr,mfptr,0,status); fits_close_file(mfptr,status); mfptr = NULL; } break; case OPT_GCP_ALL: /* for the "copy the entire group" option */ /* loop over all the grouping table members */ for(i = 1; i <= nmembers && *status == 0; ++i) { /* open the ith member */ *status = fits_open_member(infptr,i,&mfptr,status); if(*status != 0) continue; /* add it to the HDUtracker struct */ *status = fftsad(mfptr,HDU,&newPosition,NULL); /* if already copied then just add the member to the group */ if(*status == HDU_ALREADY_TRACKED) { *status = 0; *status = fits_add_group_member(outfptr,NULL,newPosition, status); fits_close_file(mfptr,status); mfptr = NULL; continue; } else if(*status != 0) continue; /* see if the member is a grouping table */ *status = fits_read_key_str(mfptr,"EXTNAME",keyvalue,card, status); if(*status == KEY_NO_EXIST) { keyvalue[0] = 0; *status = 0; } prepare_keyvalue(keyvalue); /* if the member is a grouping table then copy it and all of its members using ffgtcpr(), else copy it using fits_copy_member(); the outptr will point to the newly copied member upon return from both functions */ if(strcasecmp(keyvalue,"GROUPING") == 0) *status = ffgtcpr(mfptr,outfptr,OPT_GCP_ALL,HDU,status); else *status = fits_copy_member(infptr,outfptr,i,OPT_MCP_NADD, status); /* retrieve the position of the newly copied member */ fits_get_hdu_num(outfptr,&newPosition); /* update the HDUtracker struct with member's new position */ if(strcasecmp(keyvalue,"GROUPING") != 0) *status = fftsud(mfptr,HDU,newPosition,NULL); /* move the outfptr back to the copied grouping table HDU */ *status = fits_movabs_hdu(outfptr,groupHDUnum,&hdutype,status); /* add the copied member HDU to the copied grouping table */ *status = fits_add_group_member(outfptr,NULL,newPosition,status); /* close the mfptr pointer */ fits_close_file(mfptr,status); mfptr = NULL; } break; default: *status = BAD_OPTION; ffpmsg("Invalid value specified for cmopt parameter (ffgtcpr)"); break; } if(*status != 0) continue; /* reposition the outfptr to the grouping table so that the grouping table is the CHDU upon return to the calling function */ fits_movabs_hdu(outfptr,groupHDUnum,&hdutype,status); /* copy all auxiliary keyword records from the original grouping table to the new grouping table; they are copied in their original order and inserted just before the TTYPE1 keyword record */ *status = fits_read_card(outfptr,"TTYPE1",card,status); *status = fits_get_hdrpos(outfptr,&numkeys,&keypos,status); --keypos; startSearch = 8; while(*status == 0) { ffgrec(infptr,startSearch,card,status); *status = fits_find_nextkey(infptr,includeList,1,excludeList, nexclude,card,status); *status = fits_get_hdrpos(infptr,&numkeys,&startSearch,status); --startSearch; /* SPR 1738 */ if (strncmp(card,"GRPLC",5)) { /* Not going to be a long string so we're ok */ *status = fits_insert_record(outfptr,keypos,card,status); } else { /* We could have a long string */ *status = fits_read_record(infptr,startSearch,card,status); card[9] = '\0'; *status = fits_read_key_longstr(infptr,card,&tkeyvalue,comment, status); if (0 == *status) { fits_insert_key_longstr(outfptr,card,tkeyvalue,comment,status); fits_write_key_longwarn(outfptr,status); free(tkeyvalue); } } ++keypos; } if(*status == KEY_NO_EXIST) *status = 0; else if(*status != 0) continue; /* search all the columns of the original grouping table and copy those to the new grouping table that were not part of the grouping convention. Note that is legal to have additional columns in a grouping table. Also note that the order of the columns may not be the same in the original and copied grouping table. */ /* retrieve the number of columns in the original and new group tables */ *status = fits_read_key_lng(infptr,"TFIELDS",&tfields,card,status); *status = fits_read_key_lng(outfptr,"TFIELDS",&newTfields,card,status); for(i = 1; i <= tfields; ++i) { sprintf(keyword,"TTYPE%d",i); *status = fits_read_key_str(infptr,keyword,keyvalue,card,status); if(*status == KEY_NO_EXIST) { *status = 0; keyvalue[0] = 0; } prepare_keyvalue(keyvalue); if(strcasecmp(keyvalue,"MEMBER_XTENSION") != 0 && strcasecmp(keyvalue,"MEMBER_NAME") != 0 && strcasecmp(keyvalue,"MEMBER_VERSION") != 0 && strcasecmp(keyvalue,"MEMBER_POSITION") != 0 && strcasecmp(keyvalue,"MEMBER_LOCATION") != 0 && strcasecmp(keyvalue,"MEMBER_URI_TYPE") != 0 ) { /* SPR 3956, add at the end of the table */ *status = fits_copy_col(infptr,outfptr,i,newTfields+1,1,status); ++newTfields; } } }while(0); if(mfptr != NULL) { fits_close_file(mfptr,status); } return(*status); } /*-------------------------------------------------------------------------- HDUtracker struct manipulation functions --------------------------------------------------------------------------*/ int fftsad(fitsfile *mfptr, /* pointer to an member HDU */ HDUtracker *HDU, /* pointer to an HDU tracker struct */ int *newPosition, /* new HDU position of the member HDU */ char *newFileName) /* file containing member HDU */ /* add an HDU to the HDUtracker struct pointed to by HDU. The HDU is only added if it does not already reside in the HDUtracker. If it already resides in the HDUtracker then the new HDU postion and file name are returned in newPosition and newFileName (if != NULL) */ { int i; int hdunum; int status = 0; char filename1[FLEN_FILENAME]; char filename2[FLEN_FILENAME]; do { /* retrieve the HDU's position within the FITS file */ fits_get_hdu_num(mfptr,&hdunum); /* retrieve the HDU's file name */ status = fits_file_name(mfptr,filename1,&status); /* parse the file name and construct the "standard" URL for it */ status = ffrtnm(filename1,filename2,&status); /* examine all the existing HDUs in the HDUtracker an see if this HDU has already been registered */ for(i = 0; i < HDU->nHDU && !(HDU->position[i] == hdunum && strcmp(HDU->filename[i],filename2) == 0); ++i); if(i != HDU->nHDU) { status = HDU_ALREADY_TRACKED; if(newPosition != NULL) *newPosition = HDU->newPosition[i]; if(newFileName != NULL) strcpy(newFileName,HDU->newFilename[i]); continue; } if(HDU->nHDU == MAX_HDU_TRACKER) { status = TOO_MANY_HDUS_TRACKED; continue; } HDU->filename[i] = (char*) malloc(FLEN_FILENAME * sizeof(char)); if(HDU->filename[i] == NULL) { status = MEMORY_ALLOCATION; continue; } HDU->newFilename[i] = (char*) malloc(FLEN_FILENAME * sizeof(char)); if(HDU->newFilename[i] == NULL) { status = MEMORY_ALLOCATION; free(HDU->filename[i]); continue; } HDU->position[i] = hdunum; HDU->newPosition[i] = hdunum; strcpy(HDU->filename[i],filename2); strcpy(HDU->newFilename[i],filename2); ++(HDU->nHDU); }while(0); return(status); } /*--------------------------------------------------------------------------*/ int fftsud(fitsfile *mfptr, /* pointer to an member HDU */ HDUtracker *HDU, /* pointer to an HDU tracker struct */ int newPosition, /* new HDU position of the member HDU */ char *newFileName) /* file containing member HDU */ /* update the HDU information in the HDUtracker struct pointed to by HDU. The HDU to update is pointed to by mfptr. If non-zero, the value of newPosition is used to update the HDU->newPosition[] value for the mfptr, and if non-NULL the newFileName value is used to update the HDU->newFilename[] value for mfptr. */ { int i; int hdunum; int status = 0; char filename1[FLEN_FILENAME]; char filename2[FLEN_FILENAME]; /* retrieve the HDU's position within the FITS file */ fits_get_hdu_num(mfptr,&hdunum); /* retrieve the HDU's file name */ status = fits_file_name(mfptr,filename1,&status); /* parse the file name and construct the "standard" URL for it */ status = ffrtnm(filename1,filename2,&status); /* examine all the existing HDUs in the HDUtracker an see if this HDU has already been registered */ for(i = 0; i < HDU->nHDU && !(HDU->position[i] == hdunum && strcmp(HDU->filename[i],filename2) == 0); ++i); /* if previously registered then change newPosition and newFileName */ if(i != HDU->nHDU) { if(newPosition != 0) HDU->newPosition[i] = newPosition; if(newFileName != NULL) { strcpy(HDU->newFilename[i],newFileName); } } else status = MEMBER_NOT_FOUND; return(status); } /*---------------------------------------------------------------------------*/ void prepare_keyvalue(char *keyvalue) /* string containing keyword value */ /* strip off all single quote characters "'" and blank spaces from a keyword value retrieved via fits_read_key*() routines this is necessary so that a standard comparision of keyword values may be made */ { int i; int length; /* strip off any leading or trailing single quotes (`) and (') from the keyword value */ length = strlen(keyvalue) - 1; if(keyvalue[0] == '\'' && keyvalue[length] == '\'') { for(i = 0; i < length - 1; ++i) keyvalue[i] = keyvalue[i+1]; keyvalue[length-1] = 0; } /* strip off any trailing blanks from the keyword value; note that if the keyvalue consists of nothing but blanks then no blanks are stripped */ length = strlen(keyvalue) - 1; for(i = 0; i < length && keyvalue[i] == ' '; ++i); if(i != length) { for(i = length; i >= 0 && keyvalue[i] == ' '; --i) keyvalue[i] = '\0'; } } /*--------------------------------------------------------------------------- Host dependent directory path to/from URL functions --------------------------------------------------------------------------*/ int fits_path2url(char *inpath, /* input file path string */ char *outpath, /* output file path string */ int *status) /* convert a file path into its Unix-style equivelent for URL purposes. Note that this process is platform dependent. This function supports Unix, MSDOS/WIN32, VMS and Macintosh platforms. The plaform dependant code is conditionally compiled depending upon the setting of the appropriate C preprocessor macros. */ { char buff[FLEN_FILENAME]; #if defined(WINNT) || defined(__WINNT__) /* Microsoft Windows NT case. We assume input file paths of the form: //disk/path/filename All path segments may be null, so that a single file name is the simplist case. The leading "//" becomes a single "/" if present. If no "//" is present, then make sure the resulting URL path is relative, i.e., does not begin with a "/". In other words, the only way that an absolute URL file path may be generated is if the drive specification is given. */ if(*status > 0) return(*status); if(inpath[0] == '/') { strcpy(buff,inpath+1); } else { strcpy(buff,inpath); } #elif defined(MSDOS) || defined(__WIN32__) || defined(WIN32) /* MSDOS or Microsoft windows/NT case. The assumed form of the input path is: disk:\path\filename All path segments may be null, so that a single file name is the simplist case. All back-slashes '\' become slashes '/'; if the path starts with a string of the form "X:" then it is replaced with "/X/" */ int i,j,k; int size; if(*status > 0) return(*status); for(i = 0, j = 0, size = strlen(inpath), buff[0] = 0; i < size; j = strlen(buff)) { switch(inpath[i]) { case ':': /* must be a disk desiginator; add a slash '/' at the start of outpath to designate that the path is absolute, then change the colon ':' to a slash '/' */ for(k = j; k >= 0; --k) buff[k+1] = buff[k]; buff[0] = '/'; strcat(buff,"/"); ++i; break; case '\\': /* just replace the '\' with a '/' IF its not the first character */ if(i != 0 && buff[(j == 0 ? 0 : j-1)] != '/') { buff[j] = '/'; buff[j+1] = 0; } ++i; break; default: /* copy the character from inpath to buff as is */ buff[j] = inpath[i]; buff[j+1] = 0; ++i; break; } } #elif defined(VMS) || defined(vms) || defined(__vms) /* VMS case. Assumed format of the input path is: node::disk:[path]filename.ext;version Any part of the file path may be missing, so that in the simplist case a single file name/extension is given. all brackets "[", "]" and dots "." become "/"; dashes "-" become "..", all single colons ":" become ":/", all double colons "::" become "FILE://" */ int i,j,k; int done; int size; if(*status > 0) return(*status); /* see if inpath contains a directory specification */ if(strchr(inpath,']') == NULL) done = 1; else done = 0; for(i = 0, j = 0, size = strlen(inpath), buff[0] = 0; i < size && j < FLEN_FILENAME - 8; j = strlen(buff)) { switch(inpath[i]) { case ':': /* must be a logical/symbol separator or (in the case of a double colon "::") machine node separator */ if(inpath[i+1] == ':') { /* insert a "FILE://" at the start of buff ==> machine given */ for(k = j; k >= 0; --k) buff[k+7] = buff[k]; strncpy(buff,"FILE://",7); i += 2; } else if(strstr(buff,"FILE://") == NULL) { /* insert a "/" at the start of buff ==> absolute path */ for(k = j; k >= 0; --k) buff[k+1] = buff[k]; buff[0] = '/'; ++i; } else ++i; /* a colon always ==> path separator */ strcat(buff,"/"); break; case ']': /* end of directory spec, file name spec begins after this */ done = 1; buff[j] = '/'; buff[j+1] = 0; ++i; break; case '[': /* begin directory specification; add a '/' only if the last char is not '/' */ if(i != 0 && buff[(j == 0 ? 0 : j-1)] != '/') { buff[j] = '/'; buff[j+1] = 0; } ++i; break; case '.': /* directory segment separator or file name/extension separator; we decide which by looking at the value of done */ if(!done) { /* must be a directory segment separator */ if(inpath[i-1] == '[') { strcat(buff,"./"); ++j; } else buff[j] = '/'; } else /* must be a filename/extension separator */ buff[j] = '.'; buff[j+1] = 0; ++i; break; case '-': /* a dash is the same as ".." in Unix speak, but lets make sure that its not part of the file name first! */ if(!done) /* must be part of the directory path specification */ strcat(buff,".."); else { /* the dash is part of the filename, so just copy it as is */ buff[j] = '-'; buff[j+1] = 0; } ++i; break; default: /* nothing special, just copy the character as is */ buff[j] = inpath[i]; buff[j+1] = 0; ++i; break; } } if(j > FLEN_FILENAME - 8) { *status = URL_PARSE_ERROR; ffpmsg("resulting path to URL conversion too big (fits_path2url)"); } #elif defined(macintosh) /* MacOS case. The assumed form of the input path is: disk:path:filename It is assumed that all paths are absolute with disk and path specified, unless no colons ":" are supplied with the string ==> a single file name only. All colons ":" become slashes "/", and if one or more colon is encountered then the path is specified as absolute. */ int i,j,k; int firstColon; int size; if(*status > 0) return(*status); for(i = 0, j = 0, firstColon = 1, size = strlen(inpath), buff[0] = 0; i < size; j = strlen(buff)) { switch(inpath[i]) { case ':': /* colons imply path separators. If its the first colon encountered then assume that its the disk designator and add a slash to the beginning of the buff string */ if(firstColon) { firstColon = 0; for(k = j; k >= 0; --k) buff[k+1] = buff[k]; buff[0] = '/'; } /* all colons become slashes */ strcat(buff,"/"); ++i; break; default: /* copy the character from inpath to buff as is */ buff[j] = inpath[i]; buff[j+1] = 0; ++i; break; } } #else /* Default Unix case. Nothing special to do here except to remove the double or more // and replace them with single / */ int ii = 0; int jj = 0; if(*status > 0) return(*status); while (inpath[ii]) { if (inpath[ii] == '/' && inpath[ii+1] == '/') { /* do nothing */ } else { buff[jj] = inpath[ii]; jj++; } ii++; } buff[jj] = '\0'; /* printf("buff is %s\ninpath is %s\n",buff,inpath); */ /* strcpy(buff,inpath); */ #endif /* encode all "unsafe" and "reserved" URL characters */ *status = fits_encode_url(buff,outpath,status); return(*status); } /*---------------------------------------------------------------------------*/ int fits_url2path(char *inpath, /* input file path string */ char *outpath, /* output file path string */ int *status) /* convert a Unix-style URL into a platform dependent directory path. Note that this process is platform dependent. This function supports Unix, MSDOS/WIN32, VMS and Macintosh platforms. Each platform dependent code segment is conditionally compiled depending upon the setting of the appropriate C preprocesser macros. */ { char buff[FLEN_FILENAME]; int absolute; #if defined(MSDOS) || defined(__WIN32__) || defined(WIN32) char *tmpStr; #elif defined(VMS) || defined(vms) || defined(__vms) int i; char *tmpStr; #elif defined(macintosh) char *tmpStr; #endif if(*status != 0) return(*status); /* make a copy of the inpath so that we can manipulate it */ strcpy(buff,inpath); /* convert any encoded characters to their unencoded values */ *status = fits_unencode_url(inpath,buff,status); /* see if the URL is given as absolute w.r.t. the "local" file system */ if(buff[0] == '/') absolute = 1; else absolute = 0; #if defined(WINNT) || defined(__WINNT__) /* Microsoft Windows NT case. We create output paths of the form //disk/path/filename All path segments but the last may be null, so that a single file name is the simplist case. */ if(absolute) { strcpy(outpath,"/"); strcat(outpath,buff); } else { strcpy(outpath,buff); } #elif defined(MSDOS) || defined(__WIN32__) || defined(WIN32) /* MSDOS or Microsoft windows/NT case. The output path will be of the form disk:\path\filename All path segments but the last may be null, so that a single file name is the simplist case. */ /* separate the URL into tokens at each slash '/' and process until all tokens have been examined */ for(tmpStr = strtok(buff,"/"), outpath[0] = 0; tmpStr != NULL; tmpStr = strtok(NULL,"/")) { strcat(outpath,tmpStr); /* if the absolute flag is set then process the token as a disk specification; else just process it as a directory path or filename */ if(absolute) { strcat(outpath,":\\"); absolute = 0; } else strcat(outpath,"\\"); } /* remove the last "\" from the outpath, it does not belong there */ outpath[strlen(outpath)-1] = 0; #elif defined(VMS) || defined(vms) || defined(__vms) /* VMS case. The output path will be of the form: node::disk:[path]filename.ext;version Any part of the file path may be missing execpt filename.ext, so that in the simplist case a single file name/extension is given. if the path is specified as relative starting with "./" then the first part of the VMS path is "[.". If the path is relative and does not start with "./" (e.g., "a/b/c") then the VMS path is constructed as "[a.b.c]" */ /* separate the URL into tokens at each slash '/' and process until all tokens have been examined */ for(tmpStr = strtok(buff,"/"), outpath[0] = 0; tmpStr != NULL; tmpStr = strtok(NULL,"/")) { if(strcasecmp(tmpStr,"FILE:") == 0) { /* the next token should contain the DECnet machine name */ tmpStr = strtok(NULL,"/"); if(tmpStr == NULL) continue; strcat(outpath,tmpStr); strcat(outpath,"::"); /* set the absolute flag to true for the next token */ absolute = 1; } else if(strcmp(tmpStr,"..") == 0) { /* replace all Unix-like ".." with VMS "-" */ if(strlen(outpath) == 0) strcat(outpath,"["); strcat(outpath,"-."); } else if(strcmp(tmpStr,".") == 0 && strlen(outpath) == 0) { /* must indicate a relative path specifier */ strcat(outpath,"[."); } else if(strchr(tmpStr,'.') != NULL) { /* must be up to the file name; turn the last "." path separator into a "]" and then add the file name to the outpath */ i = strlen(outpath); if(i > 0 && outpath[i-1] == '.') outpath[i-1] = ']'; strcat(outpath,tmpStr); } else { /* process the token as a a directory path segement */ if(absolute) { /* treat the token as a disk specifier */ absolute = 0; strcat(outpath,tmpStr); strcat(outpath,":["); } else if(strlen(outpath) == 0) { /* treat the token as the first directory path specifier */ strcat(outpath,"["); strcat(outpath,tmpStr); strcat(outpath,"."); } else { /* treat the token as an imtermediate path specifier */ strcat(outpath,tmpStr); strcat(outpath,"."); } } } #elif defined(macintosh) /* MacOS case. The output path will be of the form disk:path:filename All path segments but the last may be null, so that a single file name is the simplist case. */ /* separate the URL into tokens at each slash '/' and process until all tokens have been examined */ for(tmpStr = strtok(buff,"/"), outpath[0] = 0; tmpStr != NULL; tmpStr = strtok(NULL,"/")) { strcat(outpath,tmpStr); strcat(outpath,":"); } /* remove the last ":" from the outpath, it does not belong there */ outpath[strlen(outpath)-1] = 0; #else /* Default Unix case. Nothing special to do here */ strcpy(outpath,buff); #endif return(*status); } /****************************************************************************/ int fits_get_cwd(char *cwd, /* IO current working directory string */ int *status) /* retrieve the string containing the current working directory absolute path in Unix-like URL standard notation. It is assumed that the CWD string has a size of at least FLEN_FILENAME. Note that this process is platform dependent. This function supports Unix, MSDOS/WIN32, VMS and Macintosh platforms. Each platform dependent code segment is conditionally compiled depending upon the setting of the appropriate C preprocesser macros. */ { char buff[FLEN_FILENAME]; if(*status != 0) return(*status); #if defined(macintosh) /* MacOS case. Currently unknown !!!! */ *buff = 0; #else /* Good old getcwd() seems to work with all other platforms */ getcwd(buff,FLEN_FILENAME); #endif /* convert the cwd string to a URL standard path string */ fits_path2url(buff,cwd,status); return(*status); } /*---------------------------------------------------------------------------*/ int fits_get_url(fitsfile *fptr, /* I ptr to FITS file to evaluate */ char *realURL, /* O URL of real FITS file */ char *startURL, /* O URL of starting FITS file */ char *realAccess, /* O true access method of FITS file */ char *startAccess,/* O "official" access of FITS file */ int *iostate, /* O can this file be modified? */ int *status) /* For grouping convention purposes, determine the URL of the FITS file associated with the fitsfile pointer fptr. The true access type (file://, mem://, shmem://, root://), starting "official" access type, and iostate (0 ==> readonly, 1 ==> readwrite) are also returned. It is assumed that the url string has enough room to hold the resulting URL, and the the accessType string has enough room to hold the access type. */ { int i; int tmpIOstate = 0; char infile[FLEN_FILENAME]; char outfile[FLEN_FILENAME]; char tmpStr1[FLEN_FILENAME]; char tmpStr2[FLEN_FILENAME]; char tmpStr3[FLEN_FILENAME]; char tmpStr4[FLEN_FILENAME]; char *tmpPtr; if(*status != 0) return(*status); do { /* retrieve the member HDU's file name as opened by ffopen() and parse it into its constitutent pieces; get the currently active driver token too */ *tmpStr1 = *tmpStr2 = *tmpStr3 = *tmpStr4 = 0; *status = fits_file_name(fptr,tmpStr1,status); *status = ffiurl(tmpStr1,NULL,infile,outfile,NULL,tmpStr2,tmpStr3, tmpStr4,status); if((*tmpStr2) || (*tmpStr3) || (*tmpStr4)) tmpIOstate = -1; *status = ffurlt(fptr,tmpStr3,status); strcpy(tmpStr4,tmpStr3); *status = ffrtnm(tmpStr1,tmpStr2,status); strcpy(tmpStr1,tmpStr2); /* for grouping convention purposes (only) determine the URL of the actual FITS file being used for the given fptr, its true access type (file://, mem://, shmem://, root://) and its iostate (0 ==> read only, 1 ==> readwrite) */ /* The first set of access types are "simple" in that they do not use any redirection to temporary memory or outfiles */ /* standard disk file driver is in use */ if(strcasecmp(tmpStr3,"file://") == 0) { tmpIOstate = 1; if(strlen(outfile)) strcpy(tmpStr1,outfile); else *tmpStr2 = 0; /* make sure no FILE:// specifier is given in the tmpStr1 or tmpStr2 strings; the convention calls for local files to have no access specification */ if((tmpPtr = strstr(tmpStr1,"://")) != NULL) { strcpy(infile,tmpPtr+3); strcpy(tmpStr1,infile); } if((tmpPtr = strstr(tmpStr2,"://")) != NULL) { strcpy(infile,tmpPtr+3); strcpy(tmpStr2,infile); } } /* file stored in conventional memory */ else if(strcasecmp(tmpStr3,"mem://") == 0) { if(tmpIOstate < 0) { /* file is a temp mem file only */ ffpmsg("cannot make URL from temp MEM:// file (fits_get_url)"); *status = URL_PARSE_ERROR; } else { /* file is a "perminate" mem file for this process */ tmpIOstate = 1; *tmpStr2 = 0; } } /* file stored in conventional memory */ else if(strcasecmp(tmpStr3,"memkeep://") == 0) { strcpy(tmpStr3,"mem://"); *tmpStr4 = 0; *tmpStr2 = 0; tmpIOstate = 1; } /* file residing in shared memory */ else if(strcasecmp(tmpStr3,"shmem://") == 0) { *tmpStr4 = 0; *tmpStr2 = 0; tmpIOstate = 1; } /* file accessed via the ROOT network protocol */ else if(strcasecmp(tmpStr3,"root://") == 0) { *tmpStr4 = 0; *tmpStr2 = 0; tmpIOstate = 1; } /* the next set of access types redirect the contents of the original file to an special outfile because the original could not be directly modified (i.e., resides on the network, was compressed). In these cases the URL string takes on the value of the OUTFILE, the access type becomes file://, and the iostate is set to 1 (can read/write to the file). */ /* compressed file uncompressed and written to disk */ else if(strcasecmp(tmpStr3,"compressfile://") == 0) { strcpy(tmpStr1,outfile); strcpy(tmpStr2,infile); strcpy(tmpStr3,"file://"); strcpy(tmpStr4,"file://"); tmpIOstate = 1; } /* HTTP accessed file written locally to disk */ else if(strcasecmp(tmpStr3,"httpfile://") == 0) { strcpy(tmpStr1,outfile); strcpy(tmpStr3,"file://"); strcpy(tmpStr4,"http://"); tmpIOstate = 1; } /* FTP accessd file written locally to disk */ else if(strcasecmp(tmpStr3,"ftpfile://") == 0) { strcpy(tmpStr1,outfile); strcpy(tmpStr3,"file://"); strcpy(tmpStr4,"ftp://"); tmpIOstate = 1; } /* file from STDIN written to disk */ else if(strcasecmp(tmpStr3,"stdinfile://") == 0) { strcpy(tmpStr1,outfile); strcpy(tmpStr3,"file://"); strcpy(tmpStr4,"stdin://"); tmpIOstate = 1; } /* the following access types use memory resident files as temporary storage; they cannot be modified or be made group members for grouping conventions purposes, but their original files can be. Thus, their tmpStr3s are reset to mem://, their iostate values are set to 0 (for no-modification), and their URL string values remain set to their original values */ /* compressed disk file uncompressed into memory */ else if(strcasecmp(tmpStr3,"compress://") == 0) { *tmpStr1 = 0; strcpy(tmpStr2,infile); strcpy(tmpStr3,"mem://"); strcpy(tmpStr4,"file://"); tmpIOstate = 0; } /* HTTP accessed file transferred into memory */ else if(strcasecmp(tmpStr3,"http://") == 0) { *tmpStr1 = 0; strcpy(tmpStr3,"mem://"); strcpy(tmpStr4,"http://"); tmpIOstate = 0; } /* HTTP accessed compressed file transferred into memory */ else if(strcasecmp(tmpStr3,"httpcompress://") == 0) { *tmpStr1 = 0; strcpy(tmpStr3,"mem://"); strcpy(tmpStr4,"http://"); tmpIOstate = 0; } /* FTP accessed file transferred into memory */ else if(strcasecmp(tmpStr3,"ftp://") == 0) { *tmpStr1 = 0; strcpy(tmpStr3,"mem://"); strcpy(tmpStr4,"ftp://"); tmpIOstate = 0; } /* FTP accessed compressed file transferred into memory */ else if(strcasecmp(tmpStr3,"ftpcompress://") == 0) { *tmpStr1 = 0; strcpy(tmpStr3,"mem://"); strcpy(tmpStr4,"ftp://"); tmpIOstate = 0; } /* The last set of access types cannot be used to make a meaningful URL strings from; thus an error is generated */ else if(strcasecmp(tmpStr3,"stdin://") == 0) { *status = URL_PARSE_ERROR; ffpmsg("cannot make vaild URL from stdin:// (fits_get_url)"); *tmpStr1 = *tmpStr2 = 0; } else if(strcasecmp(tmpStr3,"stdout://") == 0) { *status = URL_PARSE_ERROR; ffpmsg("cannot make vaild URL from stdout:// (fits_get_url)"); *tmpStr1 = *tmpStr2 = 0; } else if(strcasecmp(tmpStr3,"irafmem://") == 0) { *status = URL_PARSE_ERROR; ffpmsg("cannot make vaild URL from irafmem:// (fits_get_url)"); *tmpStr1 = *tmpStr2 = 0; } if(*status != 0) continue; /* assign values to the calling parameters if they are non-NULL */ if(realURL != NULL) { if(strlen(tmpStr1) == 0) *realURL = 0; else { if((tmpPtr = strstr(tmpStr1,"://")) != NULL) { tmpPtr += 3; i = (long)tmpPtr - (long)tmpStr1; strncpy(realURL,tmpStr1,i); } else { tmpPtr = tmpStr1; i = 0; } *status = fits_path2url(tmpPtr,realURL+i,status); } } if(startURL != NULL) { if(strlen(tmpStr2) == 0) *startURL = 0; else { if((tmpPtr = strstr(tmpStr2,"://")) != NULL) { tmpPtr += 3; i = (long)tmpPtr - (long)tmpStr2; strncpy(startURL,tmpStr2,i); } else { tmpPtr = tmpStr2; i = 0; } *status = fits_path2url(tmpPtr,startURL+i,status); } } if(realAccess != NULL) strcpy(realAccess,tmpStr3); if(startAccess != NULL) strcpy(startAccess,tmpStr4); if(iostate != NULL) *iostate = tmpIOstate; }while(0); return(*status); } /*-------------------------------------------------------------------------- URL parse support functions --------------------------------------------------------------------------*/ /* simple push/pop/shift/unshift string stack for use by fits_clean_url */ typedef char* grp_stack_data; /* type of data held by grp_stack */ typedef struct grp_stack_item_struct { grp_stack_data data; /* value of this stack item */ struct grp_stack_item_struct* next; /* next stack item */ struct grp_stack_item_struct* prev; /* previous stack item */ } grp_stack_item; typedef struct grp_stack_struct { size_t stack_size; /* number of items on stack */ grp_stack_item* top; /* top item */ } grp_stack; static char* grp_stack_default = NULL; /* initial value for new instances of grp_stack_data */ /* the following functions implement the group string stack grp_stack */ static void delete_grp_stack(grp_stack** mystack); static grp_stack_item* grp_stack_append( grp_stack_item* last, grp_stack_data data ); static grp_stack_data grp_stack_remove(grp_stack_item* last); static grp_stack* new_grp_stack(void); static grp_stack_data pop_grp_stack(grp_stack* mystack); static void push_grp_stack(grp_stack* mystack, grp_stack_data data); static grp_stack_data shift_grp_stack(grp_stack* mystack); /* static void unshift_grp_stack(grp_stack* mystack, grp_stack_data data); */ int fits_clean_url(char *inURL, /* I input URL string */ char *outURL, /* O output URL string */ int *status) /* clean the URL by eliminating any ".." or "." specifiers in the inURL string, and write the output to the outURL string. Note that this function must have a valid Unix-style URL as input; platform dependent path strings are not allowed. */ { grp_stack* mystack; /* stack to hold pieces of URL */ char* tmp; if(*status) return *status; mystack = new_grp_stack(); *outURL = 0; do { /* handle URL scheme and domain if they exist */ tmp = strstr(inURL, "://"); if(tmp) { /* there is a URL scheme, so look for the end of the domain too */ tmp = strchr(tmp + 3, '/'); if(tmp) { /* tmp is now the end of the domain, so * copy URL scheme and domain as is, and terminate by hand */ size_t string_size = (size_t) (tmp - inURL); strncpy(outURL, inURL, string_size); outURL[string_size] = 0; /* now advance the input pointer to just after the domain and go on */ inURL = tmp; } else { /* '/' was not found, which means there are no path-like * portions, so copy whole inURL to outURL and we're done */ strcpy(outURL, inURL); continue; /* while(0) */ } } /* explicitly copy a leading / (absolute path) */ if('/' == *inURL) strcat(outURL, "/"); /* now clean the remainder of the inURL. push URL segments onto * stack, dealing with .. and . as we go */ tmp = strtok(inURL, "/"); /* finds first / */ while(tmp) { if(!strcmp(tmp, "..")) { /* discard previous URL segment, if there was one. if not, * add the .. to the stack if this is *not* an absolute path * (for absolute paths, leading .. has no effect, so skip it) */ if(0 < mystack->stack_size) pop_grp_stack(mystack); else if('/' != *inURL) push_grp_stack(mystack, tmp); } else { /* always just skip ., but otherwise add segment to stack */ if(strcmp(tmp, ".")) push_grp_stack(mystack, tmp); } tmp = strtok(NULL, "/"); /* get the next segment */ } /* stack now has pieces of cleaned URL, so just catenate them * onto output string until stack is empty */ while(0 < mystack->stack_size) { tmp = shift_grp_stack(mystack); strcat(outURL, tmp); strcat(outURL, "/"); } outURL[strlen(outURL) - 1] = 0; /* blank out trailing / */ } while(0); delete_grp_stack(&mystack); return *status; } /* free all stack contents using pop_grp_stack before freeing the * grp_stack itself */ static void delete_grp_stack(grp_stack** mystack) { if(!mystack || !*mystack) return; while((*mystack)->stack_size) pop_grp_stack(*mystack); free(*mystack); *mystack = NULL; } /* append an item to the stack, handling the special case of the first * item appended */ static grp_stack_item* grp_stack_append( grp_stack_item* last, grp_stack_data data ) { /* first create a new stack item, and copy data to it */ grp_stack_item* new_item = (grp_stack_item*) malloc(sizeof(grp_stack_item)); new_item->data = data; if(last) { /* attach this item between the "last" item and its "next" item */ new_item->next = last->next; new_item->prev = last; last->next->prev = new_item; last->next = new_item; } else { /* stack is empty, so "next" and "previous" both point back to it */ new_item->next = new_item; new_item->prev = new_item; } return new_item; } /* remove an item from the stack, handling the special case of the last * item removed */ static grp_stack_data grp_stack_remove(grp_stack_item* last) { grp_stack_data retval = last->data; last->prev->next = last->next; last->next->prev = last->prev; free(last); return retval; } /* create new stack dynamically, and give it valid initial values */ static grp_stack* new_grp_stack(void) { grp_stack* retval = (grp_stack*) malloc(sizeof(grp_stack)); if(retval) { retval->stack_size = 0; retval->top = NULL; } return retval; } /* return the value at the top of the stack and remove it, updating * stack_size. top->prev becomes the new "top" */ static grp_stack_data pop_grp_stack(grp_stack* mystack) { grp_stack_data retval = grp_stack_default; if(mystack && mystack->top) { grp_stack_item* newtop = mystack->top->prev; retval = grp_stack_remove(mystack->top); mystack->top = newtop; if(0 == --mystack->stack_size) mystack->top = NULL; } return retval; } /* add to the stack after the top element. the added element becomes * the new "top" */ static void push_grp_stack(grp_stack* mystack, grp_stack_data data) { if(!mystack) return; mystack->top = grp_stack_append(mystack->top, data); ++mystack->stack_size; return; } /* return the value at the bottom of the stack and remove it, updating * stack_size. "top" pointer is unaffected */ static grp_stack_data shift_grp_stack(grp_stack* mystack) { grp_stack_data retval = grp_stack_default; if(mystack && mystack->top) { retval = grp_stack_remove(mystack->top->next); /* top->next == bottom */ if(0 == --mystack->stack_size) mystack->top = NULL; } return retval; } /* add to the stack after the top element. "top" is unaffected, except * in the special case of an initially empty stack */ /* static void unshift_grp_stack(grp_stack* mystack, grp_stack_data data) { if(!mystack) return; if(mystack->top) grp_stack_append(mystack->top, data); else mystack->top = grp_stack_append(NULL, data); ++mystack->stack_size; return; } */ /*--------------------------------------------------------------------------*/ int fits_url2relurl(char *refURL, /* I reference URL string */ char *absURL, /* I absoulute URL string to process */ char *relURL, /* O resulting relative URL string */ int *status) /* create a relative URL to the file referenced by absURL with respect to the reference URL refURL. The relative URL is returned in relURL. Both refURL and absURL must be absolute URL strings; i.e. either begin with an access method specification "XXX://" or with a '/' character signifiying that they are absolute file paths. Note that it is possible to make a relative URL from two input URLs (absURL and refURL) that are not compatable. This function does not check to see if the resulting relative URL makes any sence. For instance, it is impossible to make a relative URL from the following two inputs: absURL = ftp://a.b.c.com/x/y/z/foo.fits refURL = /a/b/c/ttt.fits The resulting relURL will be: ../../../ftp://a.b.c.com/x/y/z/foo.fits Which is syntically correct but meaningless. The problem is that a file with an access method of ftp:// cannot be expressed a a relative URL to a local disk file. */ { int i,j; int refcount,abscount; int refsize,abssize; int done; if(*status != 0) return(*status); /* initialize the relative URL string */ relURL[0] = 0; do { /* refURL and absURL must be absolute to process */ if(!(fits_is_url_absolute(refURL) || *refURL == '/') || !(fits_is_url_absolute(absURL) || *absURL == '/')) { *status = URL_PARSE_ERROR; ffpmsg("Cannot make rel. URL from non abs. URLs (fits_url2relurl)"); continue; } /* determine the size of the refURL and absURL strings */ refsize = strlen(refURL); abssize = strlen(absURL); /* process the two URL strings and build the relative URL between them */ for(done = 0, refcount = 0, abscount = 0; !done && refcount < refsize && abscount < abssize; ++refcount, ++abscount) { for(; abscount < abssize && absURL[abscount] == '/'; ++abscount); for(; refcount < refsize && refURL[refcount] == '/'; ++refcount); /* find the next path segment in absURL */ for(i = abscount; absURL[i] != '/' && i < abssize; ++i); /* find the next path segment in refURL */ for(j = refcount; refURL[j] != '/' && j < refsize; ++j); /* do the two path segments match? */ if(i == j && strncmp(absURL+abscount, refURL+refcount,i-refcount) == 0) { /* they match, so ignore them and continue */ abscount = i; refcount = j; continue; } /* We found a difference in the paths in refURL and absURL. For every path segment remaining in the refURL string, append a "../" path segment to the relataive URL relURL. */ for(j = refcount; j < refsize; ++j) if(refURL[j] == '/') strcat(relURL,"../"); /* copy all remaining characters of absURL to the output relURL */ strcat(relURL,absURL+abscount); /* we are done building the relative URL */ done = 1; } }while(0); return(*status); } /*--------------------------------------------------------------------------*/ int fits_relurl2url(char *refURL, /* I reference URL string */ char *relURL, /* I relative URL string to process */ char *absURL, /* O absolute URL string */ int *status) /* create an absolute URL from a relative url and a reference URL. The reference URL is given by the FITS file pointed to by fptr. The construction of the absolute URL from the partial and reference URl is performed using the rules set forth in: http://www.w3.org/Addressing/URL/URL_TOC.html and http://www.w3.org/Addressing/URL/4_3_Partial.html Note that the relative URL string relURL must conform to the Unix-like URL syntax; host dependent partial URL strings are not allowed. */ { int i; char tmpStr[FLEN_FILENAME]; char *tmpStr1, *tmpStr2; if(*status != 0) return(*status); do { /* make a copy of the reference URL string refURL for parsing purposes */ strcpy(tmpStr,refURL); /* if the reference file has an access method of mem:// or shmem:// then we cannot use it as the basis of an absolute URL construction for a partial URL */ if(strncasecmp(tmpStr,"MEM:",4) == 0 || strncasecmp(tmpStr,"SHMEM:",6) == 0) { ffpmsg("ref URL has access mem:// or shmem:// (fits_relurl2url)"); ffpmsg(" cannot construct full URL from a partial URL and "); ffpmsg(" MEM/SHMEM base URL"); *status = URL_PARSE_ERROR; continue; } if(relURL[0] != '/') { /* just append the relative URL string to the reference URL string (minus the reference URL file name) to form the absolute URL string */ tmpStr1 = strrchr(tmpStr,'/'); if(tmpStr1 != NULL) tmpStr1[1] = 0; else tmpStr[0] = 0; strcat(tmpStr,relURL); } else { /* have to parse the refURL string for the first occurnace of the same number of '/' characters as contained in the beginning of location that is not followed by a greater number of consective '/' charaters (yes, that is a confusing statement); this is the location in the refURL string where the relURL string is to be appended to form the new absolute URL string */ /* first, build up a slash pattern string that has one more slash in it than the starting slash pattern of the relURL string */ strcpy(absURL,"/"); for(i = 0; relURL[i] == '/'; ++i) strcat(absURL,"/"); /* loop over the refURL string until the slash pattern stored in absURL is no longer found */ for(tmpStr1 = tmpStr, i = strlen(absURL); (tmpStr2 = strstr(tmpStr1,absURL)) != NULL; tmpStr1 = tmpStr2 + i); /* reduce the slash pattern string by one slash */ absURL[i-1] = 0; /* search for the slash pattern in the remaining portion of the refURL string */ tmpStr2 = strstr(tmpStr1,absURL); /* if no slash pattern match was found */ if(tmpStr2 == NULL) { /* just strip off the file name from the refURL */ tmpStr2 = strrchr(tmpStr1,'/'); if(tmpStr2 != NULL) tmpStr2[0] = 0; else tmpStr[0] = 0; } else { /* set a string terminator at the slash pattern match */ *tmpStr2 = 0; } /* conatenate the relURL string to the refURL string to form the absURL */ strcat(tmpStr,relURL); } /* normalize the absURL by removing any ".." or "." specifiers in the string */ *status = fits_clean_url(tmpStr,absURL,status); }while(0); return(*status); } /*--------------------------------------------------------------------------*/ int fits_encode_url(char *inpath, /* I URL to be encoded */ char *outpath, /* O output encoded URL */ int *status) /* encode all URL "unsafe" and "reserved" characters using the "%XX" convention, where XX stand for the two hexidecimal digits of the encode character's ASCII code. Note that the output path is at least as large as, if not larger than the input path, so that OUTPATH should be passed to this function with room for growth. If not a runtime error could result. It is assumed that OUTPATH has been allocated with enough room to hold the resulting encoded URL. This function was adopted from code in the libwww.a library available via the W3 consortium */ { unsigned char a; char *p; char *q; char *hex = "0123456789ABCDEF"; unsigned const char isAcceptable[96] = {/* 0x0 0x1 0x2 0x3 0x4 0x5 0x6 0x7 0x8 0x9 0xA 0xB 0xC 0xD 0xE 0xF */ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0xF,0xE,0x0,0xF,0xF,0xC, /* 2x !"#$%&'()*+,-./ */ 0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0x8,0x0,0x0,0x0,0x0,0x0, /* 3x 0123456789:;<=>? */ 0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF, /* 4x @ABCDEFGHIJKLMNO */ 0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0x0,0x0,0x0,0x0,0xF, /* 5X PQRSTUVWXYZ[\]^_ */ 0x0,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF, /* 6x `abcdefghijklmno */ 0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0xF,0x0,0x0,0x0,0x0,0x0 /* 7X pqrstuvwxyz{\}~DEL */ }; if(*status != 0) return(*status); /* loop over all characters in inpath until '\0' is encountered */ for(q = outpath, p = inpath; *p; p++) { a = (unsigned char)*p; /* if the charcter requires encoding then process it */ if(!( a>=32 && a<128 && (isAcceptable[a-32]))) { /* add a '%' character to the outpath */ *q++ = HEX_ESCAPE; /* add the most significant ASCII code hex value */ *q++ = hex[a >> 4]; /* add the least significant ASCII code hex value */ *q++ = hex[a & 15]; } /* else just copy the character as is */ else *q++ = *p; } /* null terminate the outpath string */ *q++ = 0; return(*status); } /*---------------------------------------------------------------------------*/ int fits_unencode_url(char *inpath, /* I input URL with encoding */ char *outpath, /* O unencoded URL */ int *status) /* unencode all URL "unsafe" and "reserved" characters to their actual ASCII representation. All tokens of the form "%XX" where XX is the hexidecimal code for an ASCII character, are searched for and translated into the actuall ASCII character (so three chars become 1 char). It is assumed that OUTPATH has enough room to hold the unencoded URL. This function was adopted from code in the libwww.a library available via the W3 consortium */ { char *p; char *q; char c; if(*status != 0) return(*status); p = inpath; q = outpath; /* loop over all characters in the inpath looking for the '%' escape character; if found the process the escape sequence */ while(*p != 0) { /* if the character is '%' then unencode the sequence, else just copy the character from inpath to outpath */ if (*p == HEX_ESCAPE) { if((c = *(++p)) != 0) { *q = ( (c >= '0' && c <= '9') ? (c - '0') : ((c >= 'A' && c <= 'F') ? (c - 'A' + 10) : (c - 'a' + 10)) )*16; if((c = *(++p)) != 0) { *q = *q + ( (c >= '0' && c <= '9') ? (c - '0') : ((c >= 'A' && c <= 'F') ? (c - 'A' + 10) : (c - 'a' + 10)) ); p++, q++; } } } else *q++ = *p++; } /* terminate the outpath */ *q = 0; return(*status); } /*---------------------------------------------------------------------------*/ int fits_is_url_absolute(char *url) /* Return a True (1) or False (0) value indicating whether or not the passed URL string contains an access method specifier or not. Note that this is a boolean function and it neither reads nor returns the standard error status parameter */ { char *tmpStr1, *tmpStr2; char reserved[] = {':',';','/','?','@','&','=','+','$',','}; /* The rule for determing if an URL is relative or absolute is that it (1) must have a colon ":" and (2) that the colon must appear before any other reserved URL character in the URL string. We first see if a colon exists, get its position in the string, and then check to see if any of the other reserved characters exists and if their position in the string is greater than that of the colons. */ if( (tmpStr1 = strchr(url,reserved[0])) != NULL && ((tmpStr2 = strchr(url,reserved[1])) == NULL || tmpStr2 > tmpStr1) && ((tmpStr2 = strchr(url,reserved[2])) == NULL || tmpStr2 > tmpStr1) && ((tmpStr2 = strchr(url,reserved[3])) == NULL || tmpStr2 > tmpStr1) && ((tmpStr2 = strchr(url,reserved[4])) == NULL || tmpStr2 > tmpStr1) && ((tmpStr2 = strchr(url,reserved[5])) == NULL || tmpStr2 > tmpStr1) && ((tmpStr2 = strchr(url,reserved[6])) == NULL || tmpStr2 > tmpStr1) && ((tmpStr2 = strchr(url,reserved[7])) == NULL || tmpStr2 > tmpStr1) && ((tmpStr2 = strchr(url,reserved[8])) == NULL || tmpStr2 > tmpStr1) && ((tmpStr2 = strchr(url,reserved[9])) == NULL || tmpStr2 > tmpStr1) ) { return(1); } else { return(0); } } healpy-1.8.1/cfitsio/eval_y.c0000654000175000017530000073314712272000775016517 0ustar zoncaplanck00000000000000 /* A Bison parser, made from eval.y by GNU Bison version 1.25 */ #define FFBISON 1 /* Identify Bison output. */ #define BOOLEAN 258 #define LONG 259 #define DOUBLE 260 #define STRING 261 #define BITSTR 262 #define FUNCTION 263 #define BFUNCTION 264 #define IFUNCTION 265 #define GTIFILTER 266 #define REGFILTER 267 #define COLUMN 268 #define BCOLUMN 269 #define SCOLUMN 270 #define BITCOL 271 #define ROWREF 272 #define NULLREF 273 #define SNULLREF 274 #define OR 275 #define AND 276 #define EQ 277 #define NE 278 #define GT 279 #define LT 280 #define LTE 281 #define GTE 282 #define POWER 283 #define NOT 284 #define INTCAST 285 #define FLTCAST 286 #define UMINUS 287 #define ACCUM 288 #define DIFF 289 #line 1 "eval.y" /************************************************************************/ /* */ /* CFITSIO Lexical Parser */ /* */ /* This file is one of 3 files containing code which parses an */ /* arithmetic expression and evaluates it in the context of an input */ /* FITS file table extension. The CFITSIO lexical parser is divided */ /* into the following 3 parts/files: the CFITSIO "front-end", */ /* eval_f.c, contains the interface between the user/CFITSIO and the */ /* real core of the parser; the FLEX interpreter, eval_l.c, takes the */ /* input string and parses it into tokens and identifies the FITS */ /* information required to evaluate the expression (ie, keywords and */ /* columns); and, the BISON grammar and evaluation routines, eval_y.c, */ /* receives the FLEX output and determines and performs the actual */ /* operations. The files eval_l.c and eval_y.c are produced from */ /* running flex and bison on the files eval.l and eval.y, respectively. */ /* (flex and bison are available from any GNU archive: see www.gnu.org) */ /* */ /* The grammar rules, rather than evaluating the expression in situ, */ /* builds a tree, or Nodal, structure mapping out the order of */ /* operations and expression dependencies. This "compilation" process */ /* allows for much faster processing of multiple rows. This technique */ /* was developed by Uwe Lammers of the XMM Science Analysis System, */ /* although the CFITSIO implementation is entirely code original. */ /* */ /* */ /* Modification History: */ /* */ /* Kent Blackburn c1992 Original parser code developed for the */ /* FTOOLS software package, in particular, */ /* the fselect task. */ /* Kent Blackburn c1995 BIT column support added */ /* Peter D Wilson Feb 1998 Vector column support added */ /* Peter D Wilson May 1998 Ported to CFITSIO library. User */ /* interface routines written, in essence */ /* making fselect, fcalc, and maketime */ /* capabilities available to all tools */ /* via single function calls. */ /* Peter D Wilson Jun 1998 Major rewrite of parser core, so as to */ /* create a run-time evaluation tree, */ /* inspired by the work of Uwe Lammers, */ /* resulting in a speed increase of */ /* 10-100 times. */ /* Peter D Wilson Jul 1998 gtifilter(a,b,c,d) function added */ /* Peter D Wilson Aug 1998 regfilter(a,b,c,d) function added */ /* Peter D Wilson Jul 1999 Make parser fitsfile-independent, */ /* allowing a purely vector-based usage */ /* Craig B Markwardt Jun 2004 Add MEDIAN() function */ /* Craig B Markwardt Jun 2004 Add SUM(), and MIN/MAX() for bit arrays */ /* Craig B Markwardt Jun 2004 Allow subscripting of nX bit arrays */ /* Craig B Markwardt Jun 2004 Implement statistical functions */ /* NVALID(), AVERAGE(), and STDDEV() */ /* for integer and floating point vectors */ /* Craig B Markwardt Jun 2004 Use NULL values for range errors instead*/ /* of throwing a parse error */ /* Craig B Markwardt Oct 2004 Add ACCUM() and SEQDIFF() functions */ /* Craig B Markwardt Feb 2005 Add ANGSEP() function */ /* Craig B Markwardt Aug 2005 CIRCLE, BOX, ELLIPSE, NEAR and REGFILTER*/ /* functions now accept vector arguments */ /* Craig B Markwardt Sum 2006 Add RANDOMN() and RANDOMP() functions */ /* Craig B Markwardt Mar 2007 Allow arguments to RANDOM and RANDOMN to*/ /* determine the output dimensions */ /* Craig B Markwardt Aug 2009 Add substring STRMID() and string search*/ /* STRSTR() functions; more overflow checks*/ /* */ /************************************************************************/ #define APPROX 1.0e-7 #include "eval_defs.h" #include "region.h" #include #include #ifndef alloca #define alloca malloc #endif /* Shrink the initial stack depth to keep local data <32K (mac limit) */ /* yacc will allocate more space if needed, though. */ #define FFINITDEPTH 100 /***************************************************************/ /* Replace Bison's BACKUP macro with one that fixes a bug -- */ /* must update state after popping the stack -- and allows */ /* popping multiple terms at one time. */ /***************************************************************/ #define FFNEWBACKUP(token, value) \ do \ if (ffchar == FFEMPTY ) \ { ffchar = (token); \ memcpy( &fflval, &(value), sizeof(value) ); \ ffchar1 = FFTRANSLATE (ffchar); \ while (fflen--) FFPOPSTACK; \ ffstate = *ffssp; \ goto ffbackup; \ } \ else \ { fferror ("syntax error: cannot back up"); FFERROR; } \ while (0) /***************************************************************/ /* Useful macros for accessing/testing Nodes */ /***************************************************************/ #define TEST(a) if( (a)<0 ) FFERROR #define SIZE(a) gParse.Nodes[ a ].value.nelem #define TYPE(a) gParse.Nodes[ a ].type #define OPER(a) gParse.Nodes[ a ].operation #define PROMOTE(a,b) if( TYPE(a) > TYPE(b) ) \ b = New_Unary( TYPE(a), 0, b ); \ else if( TYPE(a) < TYPE(b) ) \ a = New_Unary( TYPE(b), 0, a ); /***** Internal functions *****/ #ifdef __cplusplus extern "C" { #endif static int Alloc_Node ( void ); static void Free_Last_Node( void ); static void Evaluate_Node ( int thisNode ); static int New_Const ( int returnType, void *value, long len ); static int New_Column( int ColNum ); static int New_Offset( int ColNum, int offset ); static int New_Unary ( int returnType, int Op, int Node1 ); static int New_BinOp ( int returnType, int Node1, int Op, int Node2 ); static int New_Func ( int returnType, funcOp Op, int nNodes, int Node1, int Node2, int Node3, int Node4, int Node5, int Node6, int Node7 ); static int New_FuncSize( int returnType, funcOp Op, int nNodes, int Node1, int Node2, int Node3, int Node4, int Node5, int Node6, int Node7, int Size); static int New_Deref ( int Var, int nDim, int Dim1, int Dim2, int Dim3, int Dim4, int Dim5 ); static int New_GTI ( char *fname, int Node1, char *start, char *stop ); static int New_REG ( char *fname, int NodeX, int NodeY, char *colNames ); static int New_Vector( int subNode ); static int Close_Vec ( int vecNode ); static int Locate_Col( Node *this ); static int Test_Dims ( int Node1, int Node2 ); static void Copy_Dims ( int Node1, int Node2 ); static void Allocate_Ptrs( Node *this ); static void Do_Unary ( Node *this ); static void Do_Offset ( Node *this ); static void Do_BinOp_bit ( Node *this ); static void Do_BinOp_str ( Node *this ); static void Do_BinOp_log ( Node *this ); static void Do_BinOp_lng ( Node *this ); static void Do_BinOp_dbl ( Node *this ); static void Do_Func ( Node *this ); static void Do_Deref ( Node *this ); static void Do_GTI ( Node *this ); static void Do_REG ( Node *this ); static void Do_Vector ( Node *this ); static long Search_GTI ( double evtTime, long nGTI, double *start, double *stop, int ordered ); static char saobox (double xcen, double ycen, double xwid, double ywid, double rot, double xcol, double ycol); static char ellipse(double xcen, double ycen, double xrad, double yrad, double rot, double xcol, double ycol); static char circle (double xcen, double ycen, double rad, double xcol, double ycol); static char bnear (double x, double y, double tolerance); static char bitcmp (char *bitstrm1, char *bitstrm2); static char bitlgte(char *bits1, int oper, char *bits2); static void bitand(char *result, char *bitstrm1, char *bitstrm2); static void bitor (char *result, char *bitstrm1, char *bitstrm2); static void bitnot(char *result, char *bits); static int cstrmid(char *dest_str, int dest_len, char *src_str, int src_len, int pos); static void fferror(char *msg); #ifdef __cplusplus } #endif #line 189 "eval.y" typedef union { int Node; /* Index of Node */ double dbl; /* real value */ long lng; /* integer value */ char log; /* logical value */ char str[MAX_STRLEN]; /* string value */ } FFSTYPE; #include #ifndef __cplusplus #ifndef __STDC__ #define const #endif #endif #define FFFINAL 290 #define FFFLAG -32768 #define FFNTBASE 54 #define FFTRANSLATE(x) ((unsigned)(x) <= 289 ? fftranslate[x] : 62) static const char fftranslate[] = { 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 50, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 37, 41, 2, 52, 53, 38, 35, 20, 36, 2, 39, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 22, 2, 2, 21, 2, 25, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 47, 2, 51, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 23, 40, 24, 30, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 26, 27, 28, 29, 31, 32, 33, 34, 42, 43, 44, 45, 46, 48, 49 }; #if FFDEBUG != 0 static const short ffprhs[] = { 0, 0, 1, 4, 6, 9, 12, 15, 18, 21, 24, 28, 31, 35, 39, 43, 46, 49, 51, 53, 58, 62, 66, 70, 75, 82, 91, 102, 115, 118, 122, 124, 126, 128, 133, 135, 137, 141, 145, 149, 153, 157, 161, 164, 167, 171, 175, 179, 185, 191, 197, 200, 204, 208, 212, 216, 222, 228, 238, 243, 250, 259, 270, 283, 286, 289, 292, 295, 297, 299, 304, 308, 312, 316, 320, 324, 328, 332, 336, 340, 344, 348, 352, 356, 360, 364, 368, 372, 376, 380, 384, 388, 392, 396, 402, 408, 412, 416, 420, 426, 434, 446, 462, 465, 469, 475, 485, 489, 497, 507, 512, 519, 528, 539, 552, 555, 559, 561, 563, 568, 570, 574, 578, 584, 590 }; static const short ffrhs[] = { -1, 54, 55, 0, 50, 0, 58, 50, 0, 59, 50, 0, 61, 50, 0, 60, 50, 0, 1, 50, 0, 23, 59, 0, 56, 20, 59, 0, 23, 58, 0, 57, 20, 58, 0, 57, 20, 59, 0, 56, 20, 58, 0, 57, 24, 0, 56, 24, 0, 7, 0, 16, 0, 16, 23, 58, 24, 0, 60, 41, 60, 0, 60, 40, 60, 0, 60, 35, 60, 0, 60, 47, 58, 51, 0, 60, 47, 58, 20, 58, 51, 0, 60, 47, 58, 20, 58, 20, 58, 51, 0, 60, 47, 58, 20, 58, 20, 58, 20, 58, 51, 0, 60, 47, 58, 20, 58, 20, 58, 20, 58, 20, 58, 51, 0, 43, 60, 0, 52, 60, 53, 0, 4, 0, 5, 0, 13, 0, 13, 23, 58, 24, 0, 17, 0, 18, 0, 58, 37, 58, 0, 58, 35, 58, 0, 58, 36, 58, 0, 58, 38, 58, 0, 58, 39, 58, 0, 58, 42, 58, 0, 35, 58, 0, 36, 58, 0, 52, 58, 53, 0, 58, 38, 59, 0, 59, 38, 58, 0, 59, 25, 58, 22, 58, 0, 59, 25, 59, 22, 58, 0, 59, 25, 58, 22, 59, 0, 8, 53, 0, 8, 59, 53, 0, 8, 61, 53, 0, 8, 60, 53, 0, 8, 58, 53, 0, 10, 61, 20, 61, 53, 0, 8, 58, 20, 58, 53, 0, 8, 58, 20, 58, 20, 58, 20, 58, 53, 0, 58, 47, 58, 51, 0, 58, 47, 58, 20, 58, 51, 0, 58, 47, 58, 20, 58, 20, 58, 51, 0, 58, 47, 58, 20, 58, 20, 58, 20, 58, 51, 0, 58, 47, 58, 20, 58, 20, 58, 20, 58, 20, 58, 51, 0, 44, 58, 0, 44, 59, 0, 45, 58, 0, 45, 59, 0, 3, 0, 14, 0, 14, 23, 58, 24, 0, 60, 28, 60, 0, 60, 29, 60, 0, 60, 32, 60, 0, 60, 33, 60, 0, 60, 31, 60, 0, 60, 34, 60, 0, 58, 31, 58, 0, 58, 32, 58, 0, 58, 34, 58, 0, 58, 33, 58, 0, 58, 30, 58, 0, 58, 28, 58, 0, 58, 29, 58, 0, 61, 28, 61, 0, 61, 29, 61, 0, 61, 31, 61, 0, 61, 34, 61, 0, 61, 32, 61, 0, 61, 33, 61, 0, 59, 27, 59, 0, 59, 26, 59, 0, 59, 28, 59, 0, 59, 29, 59, 0, 58, 21, 58, 22, 58, 0, 59, 25, 59, 22, 59, 0, 9, 58, 53, 0, 9, 59, 53, 0, 9, 61, 53, 0, 8, 59, 20, 59, 53, 0, 9, 58, 20, 58, 20, 58, 53, 0, 9, 58, 20, 58, 20, 58, 20, 58, 20, 58, 53, 0, 9, 58, 20, 58, 20, 58, 20, 58, 20, 58, 20, 58, 20, 58, 53, 0, 11, 53, 0, 11, 6, 53, 0, 11, 6, 20, 58, 53, 0, 11, 6, 20, 58, 20, 6, 20, 6, 53, 0, 12, 6, 53, 0, 12, 6, 20, 58, 20, 58, 53, 0, 12, 6, 20, 58, 20, 58, 20, 6, 53, 0, 59, 47, 58, 51, 0, 59, 47, 58, 20, 58, 51, 0, 59, 47, 58, 20, 58, 20, 58, 51, 0, 59, 47, 58, 20, 58, 20, 58, 20, 58, 51, 0, 59, 47, 58, 20, 58, 20, 58, 20, 58, 20, 58, 51, 0, 43, 59, 0, 52, 59, 53, 0, 6, 0, 15, 0, 15, 23, 58, 24, 0, 19, 0, 52, 61, 53, 0, 61, 35, 61, 0, 59, 25, 61, 22, 61, 0, 8, 61, 20, 61, 53, 0, 8, 61, 20, 58, 20, 58, 53, 0 }; #endif #if FFDEBUG != 0 static const short ffrline[] = { 0, 241, 242, 245, 246, 252, 258, 264, 270, 273, 275, 288, 290, 303, 314, 328, 332, 336, 340, 342, 351, 354, 357, 366, 368, 370, 372, 374, 376, 379, 383, 385, 387, 389, 398, 400, 402, 405, 408, 411, 414, 417, 420, 422, 424, 426, 430, 434, 453, 472, 491, 504, 518, 530, 561, 659, 667, 729, 753, 755, 757, 759, 761, 763, 765, 767, 769, 773, 775, 777, 786, 789, 792, 795, 798, 801, 804, 807, 810, 813, 816, 819, 822, 825, 828, 831, 834, 837, 840, 843, 845, 847, 849, 852, 859, 876, 889, 902, 913, 929, 953, 981, 1018, 1022, 1026, 1029, 1033, 1037, 1040, 1044, 1046, 1048, 1050, 1052, 1054, 1056, 1060, 1063, 1065, 1074, 1076, 1078, 1087, 1106, 1125 }; #endif #if FFDEBUG != 0 || defined (FFERROR_VERBOSE) static const char * const fftname[] = { "$","error","$undefined.","BOOLEAN", "LONG","DOUBLE","STRING","BITSTR","FUNCTION","BFUNCTION","IFUNCTION","GTIFILTER", "REGFILTER","COLUMN","BCOLUMN","SCOLUMN","BITCOL","ROWREF","NULLREF","SNULLREF", "','","'='","':'","'{'","'}'","'?'","OR","AND","EQ","NE","'~'","GT","LT","LTE", "GTE","'+'","'-'","'%'","'*'","'/'","'|'","'&'","POWER","NOT","INTCAST","FLTCAST", "UMINUS","'['","ACCUM","DIFF","'\\n'","']'","'('","')'","lines","line","bvector", "vector","expr","bexpr","bits","sexpr", NULL }; #endif static const short ffr1[] = { 0, 54, 54, 55, 55, 55, 55, 55, 55, 56, 56, 57, 57, 57, 57, 58, 59, 60, 60, 60, 60, 60, 60, 60, 60, 60, 60, 60, 60, 60, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 59, 61, 61, 61, 61, 61, 61, 61, 61, 61 }; static const short ffr2[] = { 0, 0, 2, 1, 2, 2, 2, 2, 2, 2, 3, 2, 3, 3, 3, 2, 2, 1, 1, 4, 3, 3, 3, 4, 6, 8, 10, 12, 2, 3, 1, 1, 1, 4, 1, 1, 3, 3, 3, 3, 3, 3, 2, 2, 3, 3, 3, 5, 5, 5, 2, 3, 3, 3, 3, 5, 5, 9, 4, 6, 8, 10, 12, 2, 2, 2, 2, 1, 1, 4, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 5, 5, 3, 3, 3, 5, 7, 11, 15, 2, 3, 5, 9, 3, 7, 9, 4, 6, 8, 10, 12, 2, 3, 1, 1, 4, 1, 3, 3, 5, 5, 7 }; static const short ffdefact[] = { 1, 0, 0, 67, 30, 31, 116, 17, 0, 0, 0, 0, 0, 32, 68, 117, 18, 34, 35, 119, 0, 0, 0, 0, 0, 0, 3, 0, 2, 0, 0, 0, 0, 0, 0, 8, 50, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 102, 0, 0, 0, 0, 0, 11, 9, 0, 42, 43, 114, 28, 63, 64, 65, 66, 0, 0, 0, 0, 0, 16, 0, 15, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 4, 0, 0, 0, 0, 0, 0, 0, 5, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 7, 0, 0, 0, 0, 0, 0, 0, 6, 0, 54, 0, 51, 53, 0, 52, 0, 95, 96, 97, 0, 0, 103, 0, 106, 0, 0, 0, 0, 44, 115, 29, 120, 14, 10, 12, 13, 0, 81, 82, 80, 76, 77, 79, 78, 37, 38, 36, 39, 45, 40, 41, 0, 0, 0, 0, 90, 89, 91, 92, 46, 0, 0, 0, 70, 71, 74, 72, 73, 75, 22, 21, 20, 0, 83, 84, 85, 87, 88, 86, 121, 0, 0, 0, 0, 0, 0, 0, 0, 33, 69, 118, 19, 0, 0, 58, 0, 0, 0, 0, 109, 28, 0, 0, 23, 0, 56, 98, 0, 123, 0, 55, 0, 104, 0, 93, 0, 47, 49, 48, 94, 122, 0, 0, 0, 0, 0, 0, 0, 0, 59, 0, 110, 0, 24, 0, 124, 0, 99, 0, 0, 107, 0, 0, 0, 0, 0, 0, 0, 0, 60, 0, 111, 0, 25, 57, 0, 105, 108, 0, 0, 0, 0, 0, 61, 0, 112, 0, 26, 0, 100, 0, 0, 0, 0, 62, 113, 27, 0, 0, 101, 0, 0 }; static const short ffdefgoto[] = { 1, 28, 29, 30, 45, 46, 43, 57 }; static const short ffpact[] = {-32768, 301, -41,-32768,-32768,-32768,-32768,-32768, 351, 402, 402, -5, 12, 8, 33, 34, 41,-32768,-32768,-32768, 402, 402, 402, 402, 402, 402,-32768, 402,-32768, -18, 9, 1092, 403, 1438, 79,-32768,-32768, 428, 143, 294, 10, 456, 224, 1478, 125, 1390, 1436, 1523, -6,-32768, 2, 402, 402, 402, 402, 1390, 1436, 1129, 19, 19, 20, 21, 19, 20, 19, 20, 623, 240, 344, 1120, 402, -32768, 402,-32768, 402, 402, 402, 402, 402, 402, 402, 402, 402, 402, 402, 402, 402, 402, 402,-32768, 402, 402, 402, 402, 402, 402, 402,-32768, -3, -3, -3, -3, -3, -3, -3, -3, -3, 402,-32768, 402, 402, 402, 402, 402, 402, 402,-32768, 402,-32768, 402,-32768, -32768, 402,-32768, 402,-32768,-32768,-32768, 402, 402,-32768, 402,-32768, 1266, 1286, 1306, 1326,-32768,-32768,-32768,-32768, 1390, 1436, 1390, 1436, 1348, 1503, 1503, 1503, 23, 23, 23, 23, 160, 160, 160, -15, 20, -15, -15, 732, 1370, 1413, 1531, 146, -13, -35, -35, -15, 756, -3, -3, -30, -30, -30, -30, -30, -30, 50, 21, 21, 780, 67, 67, 11, 11, 11, 11,-32768, 484, 1118, 1146, 1415, 1166, 1424, 512, 1186,-32768,-32768,-32768,-32768, 402, 402,-32768, 402, 402, 402, 402,-32768, 21, 1480, 402,-32768, 402,-32768,-32768, 402,-32768, 402,-32768, 66, -32768, 402, 1461, 804, 1461, 1436, 1461, 1436, 1129, 828, 852, 1206, 650, 540, 68, 568, 402,-32768, 402,-32768, 402,-32768, 402,-32768, 402,-32768, 86, 87,-32768, 876, 900, 924, 677, 1226, 52, 56, 402,-32768, 402,-32768, 402,-32768,-32768, 402,-32768,-32768, 948, 972, 996, 596, 402,-32768, 402,-32768, 402,-32768, 402,-32768, 1020, 1044, 1068, 1246,-32768,-32768,-32768, 402, 704,-32768, 126,-32768 }; static const short ffpgoto[] = {-32768, -32768,-32768,-32768, -1, 95, 124, 27 }; #define FFLAST 1566 static const short fftable[] = { 31, 48, 70, 95, 7, 104, 71, 37, 41, 35, 105, 106, 96, 16, 129, 93, 94, 107, 50, 55, 58, 59, 131, 62, 64, 95, 66, 87, 34, 72, 122, 51, 88, 73, 96, 40, 44, 47, 109, 110, 170, 111, 112, 113, 114, 115, 115, 130, 49, 171, 133, 134, 135, 136, 69, 132, 52, 53, 82, 83, 84, 85, 86, 123, 54, 87, 88, 96, 107, 141, 88, 143, 235, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 158, 159, 160, 247, 161, 105, 106, 255, 256, 168, 169, 32, 107, 111, 112, 113, 114, 115, 38, 42, 265, 181, 109, 110, 266, 111, 112, 113, 114, 115, 56, 189, 163, 60, 63, 65, 191, 67, 193, 0, 33, 290, 0, 195, 116, 196, 0, 39, 0, 0, 0, 182, 183, 184, 185, 186, 187, 188, 0, 0, 0, 0, 61, 0, 192, 0, 68, 0, 109, 110, 194, 111, 112, 113, 114, 115, 0, 0, 119, 0, 142, 0, 144, 90, 91, 92, 93, 94, 92, 93, 94, 0, 0, 127, 0, 157, 95, 0, 0, 95, 162, 164, 165, 166, 167, 96, 0, 0, 96, 0, 0, 120, 0, 85, 86, 223, 224, 87, 225, 227, 0, 230, 88, 0, 0, 231, 0, 232, 0, 190, 233, 0, 234, 0, 0, 0, 236, 172, 173, 174, 175, 176, 177, 178, 179, 180, 0, 0, 229, 0, 0, 250, 0, 251, 0, 252, 0, 253, 0, 254, 0, 0, 0, 0, 90, 91, 92, 93, 94, 0, 0, 267, 0, 268, 0, 269, 0, 95, 270, 0, 90, 91, 92, 93, 94, 279, 96, 280, 0, 281, 0, 282, 126, 95, 0, 0, 0, 0, 0, 0, 287, 0, 96, 0, 0, 0, 0, 0, 138, 209, 210, 0, 0, 0, 226, 228, 289, 2, 0, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 0, 98, 99, 20, 100, 101, 102, 103, 104, 0, 0, 0, 0, 105, 106, 21, 22, 0, 0, 0, 107, 0, 0, 23, 24, 25, 121, 0, 0, 0, 26, 0, 27, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 0, 98, 99, 20, 100, 101, 102, 103, 104, 0, 0, 0, 0, 105, 106, 21, 22, 0, 0, 0, 107, 0, 0, 23, 24, 25, 139, 0, 0, 0, 0, 0, 27, 36, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 0, 0, 0, 20, 0, 0, 90, 91, 92, 93, 94, 0, 0, 0, 0, 21, 22, 0, 0, 95, 0, 0, 0, 23, 24, 25, 117, 74, 96, 0, 0, 97, 27, 0, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 0, 0, 0, 88, 124, 74, 0, 0, 0, 118, 0, 0, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 0, 0, 0, 88, 213, 74, 0, 0, 0, 125, 0, 0, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 0, 0, 0, 88, 220, 74, 0, 0, 0, 214, 0, 0, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 0, 0, 0, 88, 245, 74, 0, 0, 0, 221, 0, 0, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 0, 0, 0, 88, 248, 74, 0, 0, 0, 246, 0, 0, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 0, 0, 0, 88, 277, 74, 0, 0, 0, 249, 0, 0, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 0, 0, 0, 88, 74, 0, 0, 0, 0, 278, 0, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 0, 0, 0, 88, 74, 0, 0, 0, 0, 137, 0, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 0, 0, 0, 88, 74, 0, 0, 0, 0, 244, 0, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 0, 0, 0, 88, 74, 0, 0, 0, 0, 263, 0, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 0, 0, 0, 88, 202, 74, 0, 0, 0, 288, 0, 0, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 207, 74, 0, 88, 0, 0, 0, 203, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 211, 74, 0, 88, 0, 0, 0, 208, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 237, 74, 0, 88, 0, 0, 0, 212, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 239, 74, 0, 88, 0, 0, 0, 238, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 241, 74, 0, 88, 0, 0, 0, 240, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 257, 74, 0, 88, 0, 0, 0, 242, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 259, 74, 0, 88, 0, 0, 0, 258, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 261, 74, 0, 88, 0, 0, 0, 260, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 271, 74, 0, 88, 0, 0, 0, 262, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 273, 74, 0, 88, 0, 0, 0, 272, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 275, 74, 0, 88, 0, 0, 0, 274, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 0, 74, 0, 88, 0, 0, 0, 276, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 0, 74, 0, 88, 0, 0, 0, 283, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 0, 74, 0, 88, 0, 0, 0, 284, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 0, 74, 0, 88, 0, 0, 0, 285, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 0, 0, 0, 88, 0, 0, 89, 90, 91, 92, 93, 94, 109, 110, 0, 111, 112, 113, 114, 115, 95, 109, 110, 0, 111, 112, 113, 114, 115, 96, 216, 74, 0, 0, 0, 215, 0, 140, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 218, 74, 87, 0, 0, 0, 0, 88, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 222, 74, 87, 0, 0, 0, 0, 88, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 243, 74, 87, 0, 0, 0, 0, 88, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 264, 74, 87, 0, 0, 0, 0, 88, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 286, 74, 87, 0, 0, 0, 0, 88, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 74, 87, 0, 197, 0, 0, 88, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 74, 87, 0, 198, 0, 0, 88, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 74, 87, 0, 199, 0, 0, 88, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 74, 87, 0, 200, 0, 0, 88, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 74, 201, 0, 0, 88, 0, 0, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 74, 204, 0, 0, 88, 0, 0, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 74, 87, 0, 0, 0, 0, 88, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 0, 205, 0, 88, 90, 91, 92, 93, 94, 109, 110, 0, 111, 112, 113, 114, 115, 95, 109, 110, 0, 111, 112, 113, 114, 115, 96, 90, 91, 92, 93, 94, 98, 99, 217, 100, 101, 102, 103, 104, 95, 0, 0, 219, 105, 106, 0, 0, 0, 96, 0, 107, 0, 0, 108, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 0, 0, 87, 0, 0, 98, 99, 88, 100, 101, 102, 103, 104, 0, 104, 0, 0, 105, 106, 105, 106, 0, 0, 0, 107, 0, 107, 0, 0, 0, 0, 0, 139, 78, 79, 80, 81, 82, 83, 84, 85, 86, 128, 0, 87, 0, 0, 0, 0, 88, 109, 110, 206, 111, 112, 113, 114, 115, 109, 110, 0, 111, 112, 113, 114, 115 }; static const short ffcheck[] = { 1, 6, 20, 38, 7, 35, 24, 8, 9, 50, 40, 41, 47, 16, 20, 28, 29, 47, 6, 20, 21, 22, 20, 24, 25, 38, 27, 42, 1, 20, 20, 23, 47, 24, 47, 8, 9, 10, 28, 29, 43, 31, 32, 33, 34, 35, 35, 53, 53, 52, 51, 52, 53, 54, 27, 53, 23, 23, 35, 36, 37, 38, 39, 53, 23, 42, 47, 47, 47, 70, 47, 72, 6, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 20, 90, 40, 41, 6, 6, 95, 96, 1, 47, 31, 32, 33, 34, 35, 8, 9, 53, 107, 28, 29, 53, 31, 32, 33, 34, 35, 20, 117, 90, 23, 24, 25, 122, 27, 124, -1, 1, 0, -1, 129, 50, 131, -1, 8, -1, -1, -1, 109, 110, 111, 112, 113, 114, 115, -1, -1, -1, -1, 23, -1, 122, -1, 27, -1, 28, 29, 128, 31, 32, 33, 34, 35, -1, -1, 20, -1, 70, -1, 72, 25, 26, 27, 28, 29, 27, 28, 29, -1, -1, 53, -1, 85, 38, -1, -1, 38, 90, 91, 92, 93, 94, 47, -1, -1, 47, -1, -1, 53, -1, 38, 39, 201, 202, 42, 204, 205, -1, 207, 47, -1, -1, 211, -1, 213, -1, 119, 216, -1, 218, -1, -1, -1, 222, 98, 99, 100, 101, 102, 103, 104, 105, 106, -1, -1, 206, -1, -1, 237, -1, 239, -1, 241, -1, 243, -1, 245, -1, -1, -1, -1, 25, 26, 27, 28, 29, -1, -1, 257, -1, 259, -1, 261, -1, 38, 264, -1, 25, 26, 27, 28, 29, 271, 47, 273, -1, 275, -1, 277, 53, 38, -1, -1, -1, -1, -1, -1, 286, -1, 47, -1, -1, -1, -1, -1, 53, 170, 171, -1, -1, -1, 204, 205, 0, 1, -1, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, -1, 28, 29, 23, 31, 32, 33, 34, 35, -1, -1, -1, -1, 40, 41, 35, 36, -1, -1, -1, 47, -1, -1, 43, 44, 45, 53, -1, -1, -1, 50, -1, 52, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, -1, 28, 29, 23, 31, 32, 33, 34, 35, -1, -1, -1, -1, 40, 41, 35, 36, -1, -1, -1, 47, -1, -1, 43, 44, 45, 53, -1, -1, -1, -1, -1, 52, 53, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, -1, -1, -1, 23, -1, -1, 25, 26, 27, 28, 29, -1, -1, -1, -1, 35, 36, -1, -1, 38, -1, -1, -1, 43, 44, 45, 20, 21, 47, -1, -1, 50, 52, -1, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, -1, -1, -1, 47, 20, 21, -1, -1, -1, 53, -1, -1, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, -1, -1, -1, 47, 20, 21, -1, -1, -1, 53, -1, -1, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, -1, -1, -1, 47, 20, 21, -1, -1, -1, 53, -1, -1, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, -1, -1, -1, 47, 20, 21, -1, -1, -1, 53, -1, -1, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, -1, -1, -1, 47, 20, 21, -1, -1, -1, 53, -1, -1, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, -1, -1, -1, 47, 20, 21, -1, -1, -1, 53, -1, -1, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, -1, -1, -1, 47, 21, -1, -1, -1, -1, 53, -1, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, -1, -1, -1, 47, 21, -1, -1, -1, -1, 53, -1, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, -1, -1, -1, 47, 21, -1, -1, -1, -1, 53, -1, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, -1, -1, -1, 47, 21, -1, -1, -1, -1, 53, -1, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, -1, -1, -1, 47, 20, 21, -1, -1, -1, 53, -1, -1, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, 20, 21, -1, 47, -1, -1, -1, 51, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, 20, 21, -1, 47, -1, -1, -1, 51, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, 20, 21, -1, 47, -1, -1, -1, 51, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, 20, 21, -1, 47, -1, -1, -1, 51, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, 20, 21, -1, 47, -1, -1, -1, 51, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, 20, 21, -1, 47, -1, -1, -1, 51, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, 20, 21, -1, 47, -1, -1, -1, 51, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, 20, 21, -1, 47, -1, -1, -1, 51, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, 20, 21, -1, 47, -1, -1, -1, 51, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, 20, 21, -1, 47, -1, -1, -1, 51, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, 20, 21, -1, 47, -1, -1, -1, 51, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, -1, 21, -1, 47, -1, -1, -1, 51, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, -1, 21, -1, 47, -1, -1, -1, 51, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, -1, 21, -1, 47, -1, -1, -1, 51, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, -1, 21, -1, 47, -1, -1, -1, 51, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, -1, -1, -1, 47, -1, -1, 50, 25, 26, 27, 28, 29, 28, 29, -1, 31, 32, 33, 34, 35, 38, 28, 29, -1, 31, 32, 33, 34, 35, 47, 20, 21, -1, -1, -1, 53, -1, 53, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 20, 21, 42, -1, -1, -1, -1, 47, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 20, 21, 42, -1, -1, -1, -1, 47, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 20, 21, 42, -1, -1, -1, -1, 47, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 20, 21, 42, -1, -1, -1, -1, 47, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 20, 21, 42, -1, -1, -1, -1, 47, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, 21, 42, -1, 24, -1, -1, 47, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, 21, 42, -1, 24, -1, -1, 47, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, 21, 42, -1, 24, -1, -1, 47, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, 21, 42, -1, 24, -1, -1, 47, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, 21, 22, -1, -1, 47, -1, -1, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, 21, 22, -1, -1, 47, -1, -1, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, 21, 42, -1, -1, -1, -1, 47, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, -1, 22, -1, 47, 25, 26, 27, 28, 29, 28, 29, -1, 31, 32, 33, 34, 35, 38, 28, 29, -1, 31, 32, 33, 34, 35, 47, 25, 26, 27, 28, 29, 28, 29, 53, 31, 32, 33, 34, 35, 38, -1, -1, 53, 40, 41, -1, -1, -1, 47, -1, 47, -1, -1, 50, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, -1, 42, -1, -1, 28, 29, 47, 31, 32, 33, 34, 35, -1, 35, -1, -1, 40, 41, 40, 41, -1, -1, -1, 47, -1, 47, -1, -1, -1, -1, -1, 53, 31, 32, 33, 34, 35, 36, 37, 38, 39, 20, -1, 42, -1, -1, -1, -1, 47, 28, 29, 22, 31, 32, 33, 34, 35, 28, 29, -1, 31, 32, 33, 34, 35 }; /* -*-C-*- Note some compilers choke on comments on `#line' lines. */ #line 3 "/usr1/local/share/bison.simple" /* Skeleton output parser for bison, Copyright (C) 1984, 1989, 1990 Free Software Foundation, Inc. This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA. */ /* As a special exception, when this file is copied by Bison into a Bison output file, you may use that output file without restriction. This special exception was added by the Free Software Foundation in version 1.24 of Bison. */ #ifndef alloca #ifdef __GNUC__ #define alloca __builtin_alloca #else /* not GNU C. */ #if (!defined (__STDC__) && defined (sparc)) || defined (__sparc__) || defined (__sparc) || defined (__sgi) #include #else /* not sparc */ #if defined (MSDOS) && !defined (__TURBOC__) #include #else /* not MSDOS, or __TURBOC__ */ #if defined(_AIX) #include #pragma alloca #else /* not MSDOS, __TURBOC__, or _AIX */ #ifdef __hpux #ifdef __cplusplus extern "C" { void *alloca (unsigned int); }; #else /* not __cplusplus */ void *alloca (); #endif /* not __cplusplus */ #endif /* __hpux */ #endif /* not _AIX */ #endif /* not MSDOS, or __TURBOC__ */ #endif /* not sparc. */ #endif /* not GNU C. */ #endif /* alloca not defined. */ /* This is the parser code that is written into each bison parser when the %semantic_parser declaration is not specified in the grammar. It was written by Richard Stallman by simplifying the hairy parser used when %semantic_parser is specified. */ /* Note: there must be only one dollar sign in this file. It is replaced by the list of actions, each action as one case of the switch. */ #define fferrok (fferrstatus = 0) #define ffclearin (ffchar = FFEMPTY) #define FFEMPTY -2 #define FFEOF 0 #define FFACCEPT return(0) #define FFABORT return(1) #define FFERROR goto fferrlab1 /* Like FFERROR except do call fferror. This remains here temporarily to ease the transition to the new meaning of FFERROR, for GCC. Once GCC version 2 has supplanted version 1, this can go. */ #define FFFAIL goto fferrlab #define FFRECOVERING() (!!fferrstatus) #define FFBACKUP(token, value) \ do \ if (ffchar == FFEMPTY && fflen == 1) \ { ffchar = (token), fflval = (value); \ ffchar1 = FFTRANSLATE (ffchar); \ FFPOPSTACK; \ goto ffbackup; \ } \ else \ { fferror ("syntax error: cannot back up"); FFERROR; } \ while (0) #define FFTERROR 1 #define FFERRCODE 256 #ifndef FFPURE #define FFLEX fflex() #endif #ifdef FFPURE #ifdef FFLSP_NEEDED #ifdef FFLEX_PARAM #define FFLEX fflex(&fflval, &fflloc, FFLEX_PARAM) #else #define FFLEX fflex(&fflval, &fflloc) #endif #else /* not FFLSP_NEEDED */ #ifdef FFLEX_PARAM #define FFLEX fflex(&fflval, FFLEX_PARAM) #else #define FFLEX fflex(&fflval) #endif #endif /* not FFLSP_NEEDED */ #endif /* If nonreentrant, generate the variables here */ #ifndef FFPURE int ffchar; /* the lookahead symbol */ FFSTYPE fflval; /* the semantic value of the */ /* lookahead symbol */ #ifdef FFLSP_NEEDED FFLTYPE fflloc; /* location data for the lookahead */ /* symbol */ #endif int ffnerrs; /* number of parse errors so far */ #endif /* not FFPURE */ #if FFDEBUG != 0 int ffdebug; /* nonzero means print parse trace */ /* Since this is uninitialized, it does not stop multiple parsers from coexisting. */ #endif /* FFINITDEPTH indicates the initial size of the parser's stacks */ #ifndef FFINITDEPTH #define FFINITDEPTH 200 #endif /* FFMAXDEPTH is the maximum size the stacks can grow to (effective only if the built-in stack extension method is used). */ #if FFMAXDEPTH == 0 #undef FFMAXDEPTH #endif #ifndef FFMAXDEPTH #define FFMAXDEPTH 10000 #endif /* Prevent warning if -Wstrict-prototypes. */ #ifdef __GNUC__ int ffparse (void); #endif #if __GNUC__ > 1 /* GNU C and GNU C++ define this. */ #define __ff_memcpy(TO,FROM,COUNT) __builtin_memcpy(TO,FROM,COUNT) #else /* not GNU C or C++ */ #ifndef __cplusplus /* This is the most reliable way to avoid incompatibilities in available built-in functions on various systems. */ static void __ff_memcpy (to, from, count) char *to; char *from; int count; { register char *f = from; register char *t = to; register int i = count; while (i-- > 0) *t++ = *f++; } #else /* __cplusplus */ /* This is the most reliable way to avoid incompatibilities in available built-in functions on various systems. */ static void __ff_memcpy (char *to, char *from, int count) { register char *f = from; register char *t = to; register int i = count; while (i-- > 0) *t++ = *f++; } #endif #endif #line 196 "/usr1/local/share/bison.simple" /* The user can define FFPARSE_PARAM as the name of an argument to be passed into ffparse. The argument should have type void *. It should actually point to an object. Grammar actions can access the variable by casting it to the proper pointer type. */ #ifdef FFPARSE_PARAM #ifdef __cplusplus #define FFPARSE_PARAM_ARG void *FFPARSE_PARAM #define FFPARSE_PARAM_DECL #else /* not __cplusplus */ #define FFPARSE_PARAM_ARG FFPARSE_PARAM #define FFPARSE_PARAM_DECL void *FFPARSE_PARAM; #endif /* not __cplusplus */ #else /* not FFPARSE_PARAM */ #define FFPARSE_PARAM_ARG #define FFPARSE_PARAM_DECL #endif /* not FFPARSE_PARAM */ int ffparse(FFPARSE_PARAM_ARG) FFPARSE_PARAM_DECL { register int ffstate; register int ffn; register short *ffssp; register FFSTYPE *ffvsp; int fferrstatus; /* number of tokens to shift before error messages enabled */ int ffchar1 = 0; /* lookahead token as an internal (translated) token number */ short ffssa[FFINITDEPTH]; /* the state stack */ FFSTYPE ffvsa[FFINITDEPTH]; /* the semantic value stack */ short *ffss = ffssa; /* refer to the stacks thru separate pointers */ FFSTYPE *ffvs = ffvsa; /* to allow ffoverflow to reallocate them elsewhere */ #ifdef FFLSP_NEEDED FFLTYPE fflsa[FFINITDEPTH]; /* the location stack */ FFLTYPE *ffls = fflsa; FFLTYPE *fflsp; #define FFPOPSTACK (ffvsp--, ffssp--, fflsp--) #else #define FFPOPSTACK (ffvsp--, ffssp--) #endif int ffstacksize = FFINITDEPTH; #ifdef FFPURE int ffchar; FFSTYPE fflval; int ffnerrs; #ifdef FFLSP_NEEDED FFLTYPE fflloc; #endif #endif FFSTYPE ffval; /* the variable used to return */ /* semantic values from the action */ /* routines */ int fflen; #if FFDEBUG != 0 if (ffdebug) fprintf(stderr, "Starting parse\n"); #endif ffstate = 0; fferrstatus = 0; ffnerrs = 0; ffchar = FFEMPTY; /* Cause a token to be read. */ /* Initialize stack pointers. Waste one element of value and location stack so that they stay on the same level as the state stack. The wasted elements are never initialized. */ ffssp = ffss - 1; ffvsp = ffvs; #ifdef FFLSP_NEEDED fflsp = ffls; #endif /* Push a new state, which is found in ffstate . */ /* In all cases, when you get here, the value and location stacks have just been pushed. so pushing a state here evens the stacks. */ ffnewstate: *++ffssp = ffstate; if (ffssp >= ffss + ffstacksize - 1) { /* Give user a chance to reallocate the stack */ /* Use copies of these so that the &'s don't force the real ones into memory. */ FFSTYPE *ffvs1 = ffvs; short *ffss1 = ffss; #ifdef FFLSP_NEEDED FFLTYPE *ffls1 = ffls; #endif /* Get the current used size of the three stacks, in elements. */ int size = ffssp - ffss + 1; #ifdef ffoverflow /* Each stack pointer address is followed by the size of the data in use in that stack, in bytes. */ #ifdef FFLSP_NEEDED /* This used to be a conditional around just the two extra args, but that might be undefined if ffoverflow is a macro. */ ffoverflow("parser stack overflow", &ffss1, size * sizeof (*ffssp), &ffvs1, size * sizeof (*ffvsp), &ffls1, size * sizeof (*fflsp), &ffstacksize); #else ffoverflow("parser stack overflow", &ffss1, size * sizeof (*ffssp), &ffvs1, size * sizeof (*ffvsp), &ffstacksize); #endif ffss = ffss1; ffvs = ffvs1; #ifdef FFLSP_NEEDED ffls = ffls1; #endif #else /* no ffoverflow */ /* Extend the stack our own way. */ if (ffstacksize >= FFMAXDEPTH) { fferror("parser stack overflow"); return 2; } ffstacksize *= 2; if (ffstacksize > FFMAXDEPTH) ffstacksize = FFMAXDEPTH; ffss = (short *) alloca (ffstacksize * sizeof (*ffssp)); __ff_memcpy ((char *)ffss, (char *)ffss1, size * sizeof (*ffssp)); ffvs = (FFSTYPE *) alloca (ffstacksize * sizeof (*ffvsp)); __ff_memcpy ((char *)ffvs, (char *)ffvs1, size * sizeof (*ffvsp)); #ifdef FFLSP_NEEDED ffls = (FFLTYPE *) alloca (ffstacksize * sizeof (*fflsp)); __ff_memcpy ((char *)ffls, (char *)ffls1, size * sizeof (*fflsp)); #endif #endif /* no ffoverflow */ ffssp = ffss + size - 1; ffvsp = ffvs + size - 1; #ifdef FFLSP_NEEDED fflsp = ffls + size - 1; #endif #if FFDEBUG != 0 if (ffdebug) fprintf(stderr, "Stack size increased to %d\n", ffstacksize); #endif if (ffssp >= ffss + ffstacksize - 1) FFABORT; } #if FFDEBUG != 0 if (ffdebug) fprintf(stderr, "Entering state %d\n", ffstate); #endif goto ffbackup; ffbackup: /* Do appropriate processing given the current state. */ /* Read a lookahead token if we need one and don't already have one. */ /* ffresume: */ /* First try to decide what to do without reference to lookahead token. */ ffn = ffpact[ffstate]; if (ffn == FFFLAG) goto ffdefault; /* Not known => get a lookahead token if don't already have one. */ /* ffchar is either FFEMPTY or FFEOF or a valid token in external form. */ if (ffchar == FFEMPTY) { #if FFDEBUG != 0 if (ffdebug) fprintf(stderr, "Reading a token: "); #endif ffchar = FFLEX; } /* Convert token to internal form (in ffchar1) for indexing tables with */ if (ffchar <= 0) /* This means end of input. */ { ffchar1 = 0; ffchar = FFEOF; /* Don't call FFLEX any more */ #if FFDEBUG != 0 if (ffdebug) fprintf(stderr, "Now at end of input.\n"); #endif } else { ffchar1 = FFTRANSLATE(ffchar); #if FFDEBUG != 0 if (ffdebug) { fprintf (stderr, "Next token is %d (%s", ffchar, fftname[ffchar1]); /* Give the individual parser a way to print the precise meaning of a token, for further debugging info. */ #ifdef FFPRINT FFPRINT (stderr, ffchar, fflval); #endif fprintf (stderr, ")\n"); } #endif } ffn += ffchar1; if (ffn < 0 || ffn > FFLAST || ffcheck[ffn] != ffchar1) goto ffdefault; ffn = fftable[ffn]; /* ffn is what to do for this token type in this state. Negative => reduce, -ffn is rule number. Positive => shift, ffn is new state. New state is final state => don't bother to shift, just return success. 0, or most negative number => error. */ if (ffn < 0) { if (ffn == FFFLAG) goto fferrlab; ffn = -ffn; goto ffreduce; } else if (ffn == 0) goto fferrlab; if (ffn == FFFINAL) FFACCEPT; /* Shift the lookahead token. */ #if FFDEBUG != 0 if (ffdebug) fprintf(stderr, "Shifting token %d (%s), ", ffchar, fftname[ffchar1]); #endif /* Discard the token being shifted unless it is eof. */ if (ffchar != FFEOF) ffchar = FFEMPTY; *++ffvsp = fflval; #ifdef FFLSP_NEEDED *++fflsp = fflloc; #endif /* count tokens shifted since error; after three, turn off error status. */ if (fferrstatus) fferrstatus--; ffstate = ffn; goto ffnewstate; /* Do the default action for the current state. */ ffdefault: ffn = ffdefact[ffstate]; if (ffn == 0) goto fferrlab; /* Do a reduction. ffn is the number of a rule to reduce with. */ ffreduce: fflen = ffr2[ffn]; if (fflen > 0) ffval = ffvsp[1-fflen]; /* implement default value of the action */ #if FFDEBUG != 0 if (ffdebug) { int i; fprintf (stderr, "Reducing via rule %d (line %d), ", ffn, ffrline[ffn]); /* Print the symbols being reduced, and their result. */ for (i = ffprhs[ffn]; ffrhs[i] > 0; i++) fprintf (stderr, "%s ", fftname[ffrhs[i]]); fprintf (stderr, " -> %s\n", fftname[ffr1[ffn]]); } #endif switch (ffn) { case 3: #line 245 "eval.y" {; break;} case 4: #line 247 "eval.y" { if( ffvsp[-1].Node<0 ) { fferror("Couldn't build node structure: out of memory?"); FFERROR; } gParse.resultNode = ffvsp[-1].Node; ; break;} case 5: #line 253 "eval.y" { if( ffvsp[-1].Node<0 ) { fferror("Couldn't build node structure: out of memory?"); FFERROR; } gParse.resultNode = ffvsp[-1].Node; ; break;} case 6: #line 259 "eval.y" { if( ffvsp[-1].Node<0 ) { fferror("Couldn't build node structure: out of memory?"); FFERROR; } gParse.resultNode = ffvsp[-1].Node; ; break;} case 7: #line 265 "eval.y" { if( ffvsp[-1].Node<0 ) { fferror("Couldn't build node structure: out of memory?"); FFERROR; } gParse.resultNode = ffvsp[-1].Node; ; break;} case 8: #line 270 "eval.y" { fferrok; ; break;} case 9: #line 274 "eval.y" { ffval.Node = New_Vector( ffvsp[0].Node ); TEST(ffval.Node); ; break;} case 10: #line 276 "eval.y" { if( gParse.Nodes[ffvsp[-2].Node].nSubNodes >= MAXSUBS ) { ffvsp[-2].Node = Close_Vec( ffvsp[-2].Node ); TEST(ffvsp[-2].Node); ffval.Node = New_Vector( ffvsp[-2].Node ); TEST(ffval.Node); } else { ffval.Node = ffvsp[-2].Node; } gParse.Nodes[ffval.Node].SubNodes[ gParse.Nodes[ffval.Node].nSubNodes++ ] = ffvsp[0].Node; ; break;} case 11: #line 289 "eval.y" { ffval.Node = New_Vector( ffvsp[0].Node ); TEST(ffval.Node); ; break;} case 12: #line 291 "eval.y" { if( TYPE(ffvsp[-2].Node) < TYPE(ffvsp[0].Node) ) TYPE(ffvsp[-2].Node) = TYPE(ffvsp[0].Node); if( gParse.Nodes[ffvsp[-2].Node].nSubNodes >= MAXSUBS ) { ffvsp[-2].Node = Close_Vec( ffvsp[-2].Node ); TEST(ffvsp[-2].Node); ffval.Node = New_Vector( ffvsp[-2].Node ); TEST(ffval.Node); } else { ffval.Node = ffvsp[-2].Node; } gParse.Nodes[ffval.Node].SubNodes[ gParse.Nodes[ffval.Node].nSubNodes++ ] = ffvsp[0].Node; ; break;} case 13: #line 304 "eval.y" { if( gParse.Nodes[ffvsp[-2].Node].nSubNodes >= MAXSUBS ) { ffvsp[-2].Node = Close_Vec( ffvsp[-2].Node ); TEST(ffvsp[-2].Node); ffval.Node = New_Vector( ffvsp[-2].Node ); TEST(ffval.Node); } else { ffval.Node = ffvsp[-2].Node; } gParse.Nodes[ffval.Node].SubNodes[ gParse.Nodes[ffval.Node].nSubNodes++ ] = ffvsp[0].Node; ; break;} case 14: #line 315 "eval.y" { TYPE(ffvsp[-2].Node) = TYPE(ffvsp[0].Node); if( gParse.Nodes[ffvsp[-2].Node].nSubNodes >= MAXSUBS ) { ffvsp[-2].Node = Close_Vec( ffvsp[-2].Node ); TEST(ffvsp[-2].Node); ffval.Node = New_Vector( ffvsp[-2].Node ); TEST(ffval.Node); } else { ffval.Node = ffvsp[-2].Node; } gParse.Nodes[ffval.Node].SubNodes[ gParse.Nodes[ffval.Node].nSubNodes++ ] = ffvsp[0].Node; ; break;} case 15: #line 329 "eval.y" { ffval.Node = Close_Vec( ffvsp[-1].Node ); TEST(ffval.Node); ; break;} case 16: #line 333 "eval.y" { ffval.Node = Close_Vec( ffvsp[-1].Node ); TEST(ffval.Node); ; break;} case 17: #line 337 "eval.y" { ffval.Node = New_Const( BITSTR, ffvsp[0].str, strlen(ffvsp[0].str)+1 ); TEST(ffval.Node); SIZE(ffval.Node) = strlen(ffvsp[0].str); ; break;} case 18: #line 341 "eval.y" { ffval.Node = New_Column( ffvsp[0].lng ); TEST(ffval.Node); ; break;} case 19: #line 343 "eval.y" { if( TYPE(ffvsp[-1].Node) != LONG || OPER(ffvsp[-1].Node) != CONST_OP ) { fferror("Offset argument must be a constant integer"); FFERROR; } ffval.Node = New_Offset( ffvsp[-3].lng, ffvsp[-1].Node ); TEST(ffval.Node); ; break;} case 20: #line 352 "eval.y" { ffval.Node = New_BinOp( BITSTR, ffvsp[-2].Node, '&', ffvsp[0].Node ); TEST(ffval.Node); SIZE(ffval.Node) = ( SIZE(ffvsp[-2].Node)>SIZE(ffvsp[0].Node) ? SIZE(ffvsp[-2].Node) : SIZE(ffvsp[0].Node) ); ; break;} case 21: #line 355 "eval.y" { ffval.Node = New_BinOp( BITSTR, ffvsp[-2].Node, '|', ffvsp[0].Node ); TEST(ffval.Node); SIZE(ffval.Node) = ( SIZE(ffvsp[-2].Node)>SIZE(ffvsp[0].Node) ? SIZE(ffvsp[-2].Node) : SIZE(ffvsp[0].Node) ); ; break;} case 22: #line 358 "eval.y" { if (SIZE(ffvsp[-2].Node)+SIZE(ffvsp[0].Node) >= MAX_STRLEN) { fferror("Combined bit string size exceeds " MAX_STRLEN_S " bits"); FFERROR; } ffval.Node = New_BinOp( BITSTR, ffvsp[-2].Node, '+', ffvsp[0].Node ); TEST(ffval.Node); SIZE(ffval.Node) = SIZE(ffvsp[-2].Node) + SIZE(ffvsp[0].Node); ; break;} case 23: #line 367 "eval.y" { ffval.Node = New_Deref( ffvsp[-3].Node, 1, ffvsp[-1].Node, 0, 0, 0, 0 ); TEST(ffval.Node); ; break;} case 24: #line 369 "eval.y" { ffval.Node = New_Deref( ffvsp[-5].Node, 2, ffvsp[-3].Node, ffvsp[-1].Node, 0, 0, 0 ); TEST(ffval.Node); ; break;} case 25: #line 371 "eval.y" { ffval.Node = New_Deref( ffvsp[-7].Node, 3, ffvsp[-5].Node, ffvsp[-3].Node, ffvsp[-1].Node, 0, 0 ); TEST(ffval.Node); ; break;} case 26: #line 373 "eval.y" { ffval.Node = New_Deref( ffvsp[-9].Node, 4, ffvsp[-7].Node, ffvsp[-5].Node, ffvsp[-3].Node, ffvsp[-1].Node, 0 ); TEST(ffval.Node); ; break;} case 27: #line 375 "eval.y" { ffval.Node = New_Deref( ffvsp[-11].Node, 5, ffvsp[-9].Node, ffvsp[-7].Node, ffvsp[-5].Node, ffvsp[-3].Node, ffvsp[-1].Node ); TEST(ffval.Node); ; break;} case 28: #line 377 "eval.y" { ffval.Node = New_Unary( BITSTR, NOT, ffvsp[0].Node ); TEST(ffval.Node); ; break;} case 29: #line 380 "eval.y" { ffval.Node = ffvsp[-1].Node; ; break;} case 30: #line 384 "eval.y" { ffval.Node = New_Const( LONG, &(ffvsp[0].lng), sizeof(long) ); TEST(ffval.Node); ; break;} case 31: #line 386 "eval.y" { ffval.Node = New_Const( DOUBLE, &(ffvsp[0].dbl), sizeof(double) ); TEST(ffval.Node); ; break;} case 32: #line 388 "eval.y" { ffval.Node = New_Column( ffvsp[0].lng ); TEST(ffval.Node); ; break;} case 33: #line 390 "eval.y" { if( TYPE(ffvsp[-1].Node) != LONG || OPER(ffvsp[-1].Node) != CONST_OP ) { fferror("Offset argument must be a constant integer"); FFERROR; } ffval.Node = New_Offset( ffvsp[-3].lng, ffvsp[-1].Node ); TEST(ffval.Node); ; break;} case 34: #line 399 "eval.y" { ffval.Node = New_Func( LONG, row_fct, 0, 0, 0, 0, 0, 0, 0, 0 ); ; break;} case 35: #line 401 "eval.y" { ffval.Node = New_Func( LONG, null_fct, 0, 0, 0, 0, 0, 0, 0, 0 ); ; break;} case 36: #line 403 "eval.y" { PROMOTE(ffvsp[-2].Node,ffvsp[0].Node); ffval.Node = New_BinOp( TYPE(ffvsp[-2].Node), ffvsp[-2].Node, '%', ffvsp[0].Node ); TEST(ffval.Node); ; break;} case 37: #line 406 "eval.y" { PROMOTE(ffvsp[-2].Node,ffvsp[0].Node); ffval.Node = New_BinOp( TYPE(ffvsp[-2].Node), ffvsp[-2].Node, '+', ffvsp[0].Node ); TEST(ffval.Node); ; break;} case 38: #line 409 "eval.y" { PROMOTE(ffvsp[-2].Node,ffvsp[0].Node); ffval.Node = New_BinOp( TYPE(ffvsp[-2].Node), ffvsp[-2].Node, '-', ffvsp[0].Node ); TEST(ffval.Node); ; break;} case 39: #line 412 "eval.y" { PROMOTE(ffvsp[-2].Node,ffvsp[0].Node); ffval.Node = New_BinOp( TYPE(ffvsp[-2].Node), ffvsp[-2].Node, '*', ffvsp[0].Node ); TEST(ffval.Node); ; break;} case 40: #line 415 "eval.y" { PROMOTE(ffvsp[-2].Node,ffvsp[0].Node); ffval.Node = New_BinOp( TYPE(ffvsp[-2].Node), ffvsp[-2].Node, '/', ffvsp[0].Node ); TEST(ffval.Node); ; break;} case 41: #line 418 "eval.y" { PROMOTE(ffvsp[-2].Node,ffvsp[0].Node); ffval.Node = New_BinOp( TYPE(ffvsp[-2].Node), ffvsp[-2].Node, POWER, ffvsp[0].Node ); TEST(ffval.Node); ; break;} case 42: #line 421 "eval.y" { ffval.Node = ffvsp[0].Node; ; break;} case 43: #line 423 "eval.y" { ffval.Node = New_Unary( TYPE(ffvsp[0].Node), UMINUS, ffvsp[0].Node ); TEST(ffval.Node); ; break;} case 44: #line 425 "eval.y" { ffval.Node = ffvsp[-1].Node; ; break;} case 45: #line 427 "eval.y" { ffvsp[0].Node = New_Unary( TYPE(ffvsp[-2].Node), 0, ffvsp[0].Node ); ffval.Node = New_BinOp( TYPE(ffvsp[-2].Node), ffvsp[-2].Node, '*', ffvsp[0].Node ); TEST(ffval.Node); ; break;} case 46: #line 431 "eval.y" { ffvsp[-2].Node = New_Unary( TYPE(ffvsp[0].Node), 0, ffvsp[-2].Node ); ffval.Node = New_BinOp( TYPE(ffvsp[0].Node), ffvsp[-2].Node, '*', ffvsp[0].Node ); TEST(ffval.Node); ; break;} case 47: #line 435 "eval.y" { PROMOTE(ffvsp[-2].Node,ffvsp[0].Node); if( ! Test_Dims(ffvsp[-2].Node,ffvsp[0].Node) ) { fferror("Incompatible dimensions in '?:' arguments"); FFERROR; } ffval.Node = New_Func( 0, ifthenelse_fct, 3, ffvsp[-2].Node, ffvsp[0].Node, ffvsp[-4].Node, 0, 0, 0, 0 ); TEST(ffval.Node); if( SIZE(ffvsp[-2].Node)=SIZE(ffvsp[-1].Node) && Test_Dims( ffvsp[-3].Node, ffvsp[-1].Node ) ) { PROMOTE(ffvsp[-3].Node,ffvsp[-1].Node); ffval.Node = New_Func( 0, defnull_fct, 2, ffvsp[-3].Node, ffvsp[-1].Node, 0, 0, 0, 0, 0 ); TEST(ffval.Node); } else { fferror("Dimensions of DEFNULL arguments " "are not compatible"); FFERROR; } } else if (FSTRCMP(ffvsp[-4].str,"ARCTAN2(") == 0) { if( TYPE(ffvsp[-3].Node) != DOUBLE ) ffvsp[-3].Node = New_Unary( DOUBLE, 0, ffvsp[-3].Node ); if( TYPE(ffvsp[-1].Node) != DOUBLE ) ffvsp[-1].Node = New_Unary( DOUBLE, 0, ffvsp[-1].Node ); if( Test_Dims( ffvsp[-3].Node, ffvsp[-1].Node ) ) { ffval.Node = New_Func( 0, atan2_fct, 2, ffvsp[-3].Node, ffvsp[-1].Node, 0, 0, 0, 0, 0 ); TEST(ffval.Node); if( SIZE(ffvsp[-3].Node)=SIZE(ffvsp[-1].Node) && Test_Dims( ffvsp[-3].Node, ffvsp[-1].Node ) ) { ffval.Node = New_Func( 0, defnull_fct, 2, ffvsp[-3].Node, ffvsp[-1].Node, 0, 0, 0, 0, 0 ); TEST(ffval.Node); } else { fferror("Dimensions of DEFNULL arguments are not compatible"); FFERROR; } } else { fferror("Boolean Function(expr,expr) not supported"); FFERROR; } ; break;} case 99: #line 930 "eval.y" { if( TYPE(ffvsp[-5].Node) != DOUBLE ) ffvsp[-5].Node = New_Unary( DOUBLE, 0, ffvsp[-5].Node ); if( TYPE(ffvsp[-3].Node) != DOUBLE ) ffvsp[-3].Node = New_Unary( DOUBLE, 0, ffvsp[-3].Node ); if( TYPE(ffvsp[-1].Node) != DOUBLE ) ffvsp[-1].Node = New_Unary( DOUBLE, 0, ffvsp[-1].Node ); if( ! (Test_Dims( ffvsp[-5].Node, ffvsp[-3].Node ) && Test_Dims( ffvsp[-3].Node, ffvsp[-1].Node ) ) ) { fferror("Dimensions of NEAR arguments " "are not compatible"); FFERROR; } else { if (FSTRCMP(ffvsp[-6].str,"NEAR(") == 0) { ffval.Node = New_Func( BOOLEAN, near_fct, 3, ffvsp[-5].Node, ffvsp[-3].Node, ffvsp[-1].Node, 0, 0, 0, 0 ); } else { fferror("Boolean Function not supported"); FFERROR; } TEST(ffval.Node); if( SIZE(ffval.Node)= MAX_STRLEN) { fferror("Combined string size exceeds " MAX_STRLEN_S " characters"); FFERROR; } ffval.Node = New_BinOp( STRING, ffvsp[-2].Node, '+', ffvsp[0].Node ); TEST(ffval.Node); SIZE(ffval.Node) = SIZE(ffvsp[-2].Node) + SIZE(ffvsp[0].Node); ; break;} case 122: #line 1088 "eval.y" { int outSize; if( SIZE(ffvsp[-4].Node)!=1 ) { fferror("Cannot have a vector string column"); FFERROR; } /* Since the output can be calculated now, as a constant scalar, we must precalculate the output size, in order to avoid an overflow. */ outSize = SIZE(ffvsp[-2].Node); if (SIZE(ffvsp[0].Node) > outSize) outSize = SIZE(ffvsp[0].Node); ffval.Node = New_FuncSize( 0, ifthenelse_fct, 3, ffvsp[-2].Node, ffvsp[0].Node, ffvsp[-4].Node, 0, 0, 0, 0, outSize); TEST(ffval.Node); if( SIZE(ffvsp[-2].Node) outSize) outSize = SIZE(ffvsp[-1].Node); ffval.Node = New_FuncSize( 0, defnull_fct, 2, ffvsp[-3].Node, ffvsp[-1].Node, 0, 0, 0, 0, 0, outSize ); TEST(ffval.Node); if( SIZE(ffvsp[-1].Node)>SIZE(ffvsp[-3].Node) ) SIZE(ffval.Node) = SIZE(ffvsp[-1].Node); } else { fferror("Function(string,string) not supported"); FFERROR; } ; break;} case 124: #line 1126 "eval.y" { if (FSTRCMP(ffvsp[-6].str,"STRMID(") == 0) { int len; if( TYPE(ffvsp[-3].Node) != LONG || SIZE(ffvsp[-3].Node) != 1 || TYPE(ffvsp[-1].Node) != LONG || SIZE(ffvsp[-1].Node) != 1) { fferror("When using STRMID(S,P,N), P and N must be integers (and not vector columns)"); FFERROR; } if (OPER(ffvsp[-1].Node) == CONST_OP) { /* Constant value: use that directly */ len = (gParse.Nodes[ffvsp[-1].Node].value.data.lng); } else { /* Variable value: use the maximum possible (from $2) */ len = SIZE(ffvsp[-5].Node); } if (len <= 0 || len >= MAX_STRLEN) { fferror("STRMID(S,P,N), N must be 1-" MAX_STRLEN_S); FFERROR; } ffval.Node = New_FuncSize( 0, strmid_fct, 3, ffvsp[-5].Node, ffvsp[-3].Node,ffvsp[-1].Node,0,0,0,0,len); TEST(ffval.Node); } else { fferror("Function(string,expr,expr) not supported"); FFERROR; } ; break;} } /* the action file gets copied in in place of this dollarsign */ #line 498 "/usr1/local/share/bison.simple" ffvsp -= fflen; ffssp -= fflen; #ifdef FFLSP_NEEDED fflsp -= fflen; #endif #if FFDEBUG != 0 if (ffdebug) { short *ssp1 = ffss - 1; fprintf (stderr, "state stack now"); while (ssp1 != ffssp) fprintf (stderr, " %d", *++ssp1); fprintf (stderr, "\n"); } #endif *++ffvsp = ffval; #ifdef FFLSP_NEEDED fflsp++; if (fflen == 0) { fflsp->first_line = fflloc.first_line; fflsp->first_column = fflloc.first_column; fflsp->last_line = (fflsp-1)->last_line; fflsp->last_column = (fflsp-1)->last_column; fflsp->text = 0; } else { fflsp->last_line = (fflsp+fflen-1)->last_line; fflsp->last_column = (fflsp+fflen-1)->last_column; } #endif /* Now "shift" the result of the reduction. Determine what state that goes to, based on the state we popped back to and the rule number reduced by. */ ffn = ffr1[ffn]; ffstate = ffpgoto[ffn - FFNTBASE] + *ffssp; if (ffstate >= 0 && ffstate <= FFLAST && ffcheck[ffstate] == *ffssp) ffstate = fftable[ffstate]; else ffstate = ffdefgoto[ffn - FFNTBASE]; goto ffnewstate; fferrlab: /* here on detecting error */ if (! fferrstatus) /* If not already recovering from an error, report this error. */ { ++ffnerrs; #ifdef FFERROR_VERBOSE ffn = ffpact[ffstate]; if (ffn > FFFLAG && ffn < FFLAST) { int size = 0; char *msg; int x, count; count = 0; /* Start X at -ffn if nec to avoid negative indexes in ffcheck. */ for (x = (ffn < 0 ? -ffn : 0); x < (sizeof(fftname) / sizeof(char *)); x++) if (ffcheck[x + ffn] == x) size += strlen(fftname[x]) + 15, count++; msg = (char *) malloc(size + 15); if (msg != 0) { strcpy(msg, "parse error"); if (count < 5) { count = 0; for (x = (ffn < 0 ? -ffn : 0); x < (sizeof(fftname) / sizeof(char *)); x++) if (ffcheck[x + ffn] == x) { strcat(msg, count == 0 ? ", expecting `" : " or `"); strcat(msg, fftname[x]); strcat(msg, "'"); count++; } } fferror(msg); free(msg); } else fferror ("parse error; also virtual memory exceeded"); } else #endif /* FFERROR_VERBOSE */ fferror("parse error"); } goto fferrlab1; fferrlab1: /* here on error raised explicitly by an action */ if (fferrstatus == 3) { /* if just tried and failed to reuse lookahead token after an error, discard it. */ /* return failure if at end of input */ if (ffchar == FFEOF) FFABORT; #if FFDEBUG != 0 if (ffdebug) fprintf(stderr, "Discarding token %d (%s).\n", ffchar, fftname[ffchar1]); #endif ffchar = FFEMPTY; } /* Else will try to reuse lookahead token after shifting the error token. */ fferrstatus = 3; /* Each real token shifted decrements this */ goto fferrhandle; fferrdefault: /* current state does not do anything special for the error token. */ #if 0 /* This is wrong; only states that explicitly want error tokens should shift them. */ ffn = ffdefact[ffstate]; /* If its default is to accept any token, ok. Otherwise pop it.*/ if (ffn) goto ffdefault; #endif fferrpop: /* pop the current state because it cannot handle the error token */ if (ffssp == ffss) FFABORT; ffvsp--; ffstate = *--ffssp; #ifdef FFLSP_NEEDED fflsp--; #endif #if FFDEBUG != 0 if (ffdebug) { short *ssp1 = ffss - 1; fprintf (stderr, "Error: state stack now"); while (ssp1 != ffssp) fprintf (stderr, " %d", *++ssp1); fprintf (stderr, "\n"); } #endif fferrhandle: ffn = ffpact[ffstate]; if (ffn == FFFLAG) goto fferrdefault; ffn += FFTERROR; if (ffn < 0 || ffn > FFLAST || ffcheck[ffn] != FFTERROR) goto fferrdefault; ffn = fftable[ffn]; if (ffn < 0) { if (ffn == FFFLAG) goto fferrpop; ffn = -ffn; goto ffreduce; } else if (ffn == 0) goto fferrpop; if (ffn == FFFINAL) FFACCEPT; #if FFDEBUG != 0 if (ffdebug) fprintf(stderr, "Shifting error token, "); #endif *++ffvsp = fflval; #ifdef FFLSP_NEEDED *++fflsp = fflloc; #endif ffstate = ffn; goto ffnewstate; } #line 1155 "eval.y" /*************************************************************************/ /* Start of "New" routines which build the expression Nodal structure */ /*************************************************************************/ static int Alloc_Node( void ) { /* Use this for allocation to guarantee *Nodes */ Node *newNodePtr; /* survives on failure, making it still valid */ /* while working our way out of this error */ if( gParse.nNodes == gParse.nNodesAlloc ) { if( gParse.Nodes ) { gParse.nNodesAlloc += gParse.nNodesAlloc; newNodePtr = (Node *)realloc( gParse.Nodes, sizeof(Node)*gParse.nNodesAlloc ); } else { gParse.nNodesAlloc = 100; newNodePtr = (Node *)malloc ( sizeof(Node)*gParse.nNodesAlloc ); } if( newNodePtr ) { gParse.Nodes = newNodePtr; } else { gParse.status = MEMORY_ALLOCATION; return( -1 ); } } return ( gParse.nNodes++ ); } static void Free_Last_Node( void ) { if( gParse.nNodes ) gParse.nNodes--; } static int New_Const( int returnType, void *value, long len ) { Node *this; int n; n = Alloc_Node(); if( n>=0 ) { this = gParse.Nodes + n; this->operation = CONST_OP; /* Flag a constant */ this->DoOp = NULL; this->nSubNodes = 0; this->type = returnType; memcpy( &(this->value.data), value, len ); this->value.undef = NULL; this->value.nelem = 1; this->value.naxis = 1; this->value.naxes[0] = 1; } return(n); } static int New_Column( int ColNum ) { Node *this; int n, i; n = Alloc_Node(); if( n>=0 ) { this = gParse.Nodes + n; this->operation = -ColNum; this->DoOp = NULL; this->nSubNodes = 0; this->type = gParse.varData[ColNum].type; this->value.nelem = gParse.varData[ColNum].nelem; this->value.naxis = gParse.varData[ColNum].naxis; for( i=0; ivalue.naxes[i] = gParse.varData[ColNum].naxes[i]; } return(n); } static int New_Offset( int ColNum, int offsetNode ) { Node *this; int n, i, colNode; colNode = New_Column( ColNum ); if( colNode<0 ) return(-1); n = Alloc_Node(); if( n>=0 ) { this = gParse.Nodes + n; this->operation = '{'; this->DoOp = Do_Offset; this->nSubNodes = 2; this->SubNodes[0] = colNode; this->SubNodes[1] = offsetNode; this->type = gParse.varData[ColNum].type; this->value.nelem = gParse.varData[ColNum].nelem; this->value.naxis = gParse.varData[ColNum].naxis; for( i=0; ivalue.naxes[i] = gParse.varData[ColNum].naxes[i]; } return(n); } static int New_Unary( int returnType, int Op, int Node1 ) { Node *this, *that; int i,n; if( Node1<0 ) return(-1); that = gParse.Nodes + Node1; if( !Op ) Op = returnType; if( (Op==DOUBLE || Op==FLTCAST) && that->type==DOUBLE ) return( Node1 ); if( (Op==LONG || Op==INTCAST) && that->type==LONG ) return( Node1 ); if( (Op==BOOLEAN ) && that->type==BOOLEAN ) return( Node1 ); n = Alloc_Node(); if( n>=0 ) { this = gParse.Nodes + n; this->operation = Op; this->DoOp = Do_Unary; this->nSubNodes = 1; this->SubNodes[0] = Node1; this->type = returnType; that = gParse.Nodes + Node1; /* Reset in case .Nodes mv'd */ this->value.nelem = that->value.nelem; this->value.naxis = that->value.naxis; for( i=0; ivalue.naxis; i++ ) this->value.naxes[i] = that->value.naxes[i]; if( that->operation==CONST_OP ) this->DoOp( this ); } return( n ); } static int New_BinOp( int returnType, int Node1, int Op, int Node2 ) { Node *this,*that1,*that2; int n,i,constant; if( Node1<0 || Node2<0 ) return(-1); n = Alloc_Node(); if( n>=0 ) { this = gParse.Nodes + n; this->operation = Op; this->nSubNodes = 2; this->SubNodes[0]= Node1; this->SubNodes[1]= Node2; this->type = returnType; that1 = gParse.Nodes + Node1; that2 = gParse.Nodes + Node2; constant = (that1->operation==CONST_OP && that2->operation==CONST_OP); if( that1->type!=STRING && that1->type!=BITSTR ) if( !Test_Dims( Node1, Node2 ) ) { Free_Last_Node(); fferror("Array sizes/dims do not match for binary operator"); return(-1); } if( that1->value.nelem == 1 ) that1 = that2; this->value.nelem = that1->value.nelem; this->value.naxis = that1->value.naxis; for( i=0; ivalue.naxis; i++ ) this->value.naxes[i] = that1->value.naxes[i]; if ( Op == ACCUM && that1->type == BITSTR ) { /* ACCUM is rank-reducing on bit strings */ this->value.nelem = 1; this->value.naxis = 1; this->value.naxes[0] = 1; } /* Both subnodes should be of same time */ switch( that1->type ) { case BITSTR: this->DoOp = Do_BinOp_bit; break; case STRING: this->DoOp = Do_BinOp_str; break; case BOOLEAN: this->DoOp = Do_BinOp_log; break; case LONG: this->DoOp = Do_BinOp_lng; break; case DOUBLE: this->DoOp = Do_BinOp_dbl; break; } if( constant ) this->DoOp( this ); } return( n ); } static int New_Func( int returnType, funcOp Op, int nNodes, int Node1, int Node2, int Node3, int Node4, int Node5, int Node6, int Node7 ) { return New_FuncSize(returnType, Op, nNodes, Node1, Node2, Node3, Node4, Node5, Node6, Node7, 0); } static int New_FuncSize( int returnType, funcOp Op, int nNodes, int Node1, int Node2, int Node3, int Node4, int Node5, int Node6, int Node7, int Size ) /* If returnType==0 , use Node1's type and vector sizes as returnType, */ /* else return a single value of type returnType */ { Node *this, *that; int i,n,constant; if( Node1<0 || Node2<0 || Node3<0 || Node4<0 || Node5<0 || Node6<0 || Node7<0 ) return(-1); n = Alloc_Node(); if( n>=0 ) { this = gParse.Nodes + n; this->operation = (int)Op; this->DoOp = Do_Func; this->nSubNodes = nNodes; this->SubNodes[0] = Node1; this->SubNodes[1] = Node2; this->SubNodes[2] = Node3; this->SubNodes[3] = Node4; this->SubNodes[4] = Node5; this->SubNodes[5] = Node6; this->SubNodes[6] = Node7; i = constant = nNodes; /* Functions with zero params are not const */ if (Op == poirnd_fct) constant = 0; /* Nor is Poisson deviate */ while( i-- ) constant = ( constant && OPER(this->SubNodes[i]) == CONST_OP ); if( returnType ) { this->type = returnType; this->value.nelem = 1; this->value.naxis = 1; this->value.naxes[0] = 1; } else { that = gParse.Nodes + Node1; this->type = that->type; this->value.nelem = that->value.nelem; this->value.naxis = that->value.naxis; for( i=0; ivalue.naxis; i++ ) this->value.naxes[i] = that->value.naxes[i]; } /* Force explicit size before evaluating */ if (Size > 0) this->value.nelem = Size; if( constant ) this->DoOp( this ); } return( n ); } static int New_Deref( int Var, int nDim, int Dim1, int Dim2, int Dim3, int Dim4, int Dim5 ) { int n, idx, constant; long elem=0; Node *this, *theVar, *theDim[MAXDIMS]; if( Var<0 || Dim1<0 || Dim2<0 || Dim3<0 || Dim4<0 || Dim5<0 ) return(-1); theVar = gParse.Nodes + Var; if( theVar->operation==CONST_OP || theVar->value.nelem==1 ) { fferror("Cannot index a scalar value"); return(-1); } n = Alloc_Node(); if( n>=0 ) { this = gParse.Nodes + n; this->nSubNodes = nDim+1; theVar = gParse.Nodes + (this->SubNodes[0]=Var); theDim[0] = gParse.Nodes + (this->SubNodes[1]=Dim1); theDim[1] = gParse.Nodes + (this->SubNodes[2]=Dim2); theDim[2] = gParse.Nodes + (this->SubNodes[3]=Dim3); theDim[3] = gParse.Nodes + (this->SubNodes[4]=Dim4); theDim[4] = gParse.Nodes + (this->SubNodes[5]=Dim5); constant = theVar->operation==CONST_OP; for( idx=0; idxoperation==CONST_OP); for( idx=0; idxvalue.nelem>1 ) { Free_Last_Node(); fferror("Cannot use an array as an index value"); return(-1); } else if( theDim[idx]->type!=LONG ) { Free_Last_Node(); fferror("Index value must be an integer type"); return(-1); } this->operation = '['; this->DoOp = Do_Deref; this->type = theVar->type; if( theVar->value.naxis == nDim ) { /* All dimensions specified */ this->value.nelem = 1; this->value.naxis = 1; this->value.naxes[0] = 1; } else if( nDim==1 ) { /* Dereference only one dimension */ elem=1; this->value.naxis = theVar->value.naxis-1; for( idx=0; idxvalue.naxis; idx++ ) { elem *= ( this->value.naxes[idx] = theVar->value.naxes[idx] ); } this->value.nelem = elem; } else { Free_Last_Node(); fferror("Must specify just one or all indices for vector"); return(-1); } if( constant ) this->DoOp( this ); } return(n); } extern int ffGetVariable( char *varName, FFSTYPE *varVal ); static int New_GTI( char *fname, int Node1, char *start, char *stop ) { fitsfile *fptr; Node *this, *that0, *that1; int type,i,n, startCol, stopCol, Node0; int hdutype, hdunum, evthdu, samefile, extvers, movetotype, tstat; char extname[100]; long nrows; double timeZeroI[2], timeZeroF[2], dt, timeSpan; char xcol[20], xexpr[20]; FFSTYPE colVal; if( Node1==-99 ) { type = ffGetVariable( "TIME", &colVal ); if( type==COLUMN ) { Node1 = New_Column( (int)colVal.lng ); } else { fferror("Could not build TIME column for GTIFILTER"); return(-1); } } Node1 = New_Unary( DOUBLE, 0, Node1 ); Node0 = Alloc_Node(); /* This will hold the START/STOP times */ if( Node1<0 || Node0<0 ) return(-1); /* Record current HDU number in case we need to move within this file */ fptr = gParse.def_fptr; ffghdn( fptr, &evthdu ); /* Look for TIMEZERO keywords in current extension */ tstat = 0; if( ffgkyd( fptr, "TIMEZERO", timeZeroI, NULL, &tstat ) ) { tstat = 0; if( ffgkyd( fptr, "TIMEZERI", timeZeroI, NULL, &tstat ) ) { timeZeroI[0] = timeZeroF[0] = 0.0; } else if( ffgkyd( fptr, "TIMEZERF", timeZeroF, NULL, &tstat ) ) { timeZeroF[0] = 0.0; } } else { timeZeroF[0] = 0.0; } /* Resolve filename parameter */ switch( fname[0] ) { case '\0': samefile = 1; hdunum = 1; break; case '[': samefile = 1; i = 1; while( fname[i] != '\0' && fname[i] != ']' ) i++; if( fname[i] ) { fname[i] = '\0'; fname++; ffexts( fname, &hdunum, extname, &extvers, &movetotype, xcol, xexpr, &gParse.status ); if( *extname ) { ffmnhd( fptr, movetotype, extname, extvers, &gParse.status ); ffghdn( fptr, &hdunum ); } else if( hdunum ) { ffmahd( fptr, ++hdunum, &hdutype, &gParse.status ); } else if( !gParse.status ) { fferror("Cannot use primary array for GTI filter"); return( -1 ); } } else { fferror("File extension specifier lacks closing ']'"); return( -1 ); } break; case '+': samefile = 1; hdunum = atoi( fname ) + 1; if( hdunum>1 ) ffmahd( fptr, hdunum, &hdutype, &gParse.status ); else { fferror("Cannot use primary array for GTI filter"); return( -1 ); } break; default: samefile = 0; if( ! ffopen( &fptr, fname, READONLY, &gParse.status ) ) ffghdn( fptr, &hdunum ); break; } if( gParse.status ) return(-1); /* If at primary, search for GTI extension */ if( hdunum==1 ) { while( 1 ) { hdunum++; if( ffmahd( fptr, hdunum, &hdutype, &gParse.status ) ) break; if( hdutype==IMAGE_HDU ) continue; tstat = 0; if( ffgkys( fptr, "EXTNAME", extname, NULL, &tstat ) ) continue; ffupch( extname ); if( strstr( extname, "GTI" ) ) break; } if( gParse.status ) { if( gParse.status==END_OF_FILE ) fferror("GTI extension not found in this file"); return(-1); } } /* Locate START/STOP Columns */ ffgcno( fptr, CASEINSEN, start, &startCol, &gParse.status ); ffgcno( fptr, CASEINSEN, stop, &stopCol, &gParse.status ); if( gParse.status ) return(-1); /* Look for TIMEZERO keywords in GTI extension */ tstat = 0; if( ffgkyd( fptr, "TIMEZERO", timeZeroI+1, NULL, &tstat ) ) { tstat = 0; if( ffgkyd( fptr, "TIMEZERI", timeZeroI+1, NULL, &tstat ) ) { timeZeroI[1] = timeZeroF[1] = 0.0; } else if( ffgkyd( fptr, "TIMEZERF", timeZeroF+1, NULL, &tstat ) ) { timeZeroF[1] = 0.0; } } else { timeZeroF[1] = 0.0; } n = Alloc_Node(); if( n >= 0 ) { this = gParse.Nodes + n; this->nSubNodes = 2; this->SubNodes[1] = Node1; this->operation = (int)gtifilt_fct; this->DoOp = Do_GTI; this->type = BOOLEAN; that1 = gParse.Nodes + Node1; this->value.nelem = that1->value.nelem; this->value.naxis = that1->value.naxis; for( i=0; i < that1->value.naxis; i++ ) this->value.naxes[i] = that1->value.naxes[i]; /* Init START/STOP node to be treated as a "constant" */ this->SubNodes[0] = Node0; that0 = gParse.Nodes + Node0; that0->operation = CONST_OP; that0->DoOp = NULL; that0->value.data.ptr= NULL; /* Read in START/STOP times */ if( ffgkyj( fptr, "NAXIS2", &nrows, NULL, &gParse.status ) ) return(-1); that0->value.nelem = nrows; if( nrows ) { that0->value.data.dblptr = (double*)malloc( 2*nrows*sizeof(double) ); if( !that0->value.data.dblptr ) { gParse.status = MEMORY_ALLOCATION; return(-1); } ffgcvd( fptr, startCol, 1L, 1L, nrows, 0.0, that0->value.data.dblptr, &i, &gParse.status ); ffgcvd( fptr, stopCol, 1L, 1L, nrows, 0.0, that0->value.data.dblptr+nrows, &i, &gParse.status ); if( gParse.status ) { free( that0->value.data.dblptr ); return(-1); } /* Test for fully time-ordered GTI... both START && STOP */ that0->type = 1; /* Assume yes */ i = nrows; while( --i ) if( that0->value.data.dblptr[i-1] >= that0->value.data.dblptr[i] || that0->value.data.dblptr[i-1+nrows] >= that0->value.data.dblptr[i+nrows] ) { that0->type = 0; break; } /* Handle TIMEZERO offset, if any */ dt = (timeZeroI[1] - timeZeroI[0]) + (timeZeroF[1] - timeZeroF[0]); timeSpan = that0->value.data.dblptr[nrows+nrows-1] - that0->value.data.dblptr[0]; if( fabs( dt / timeSpan ) > 1e-12 ) { for( i=0; i<(nrows+nrows); i++ ) that0->value.data.dblptr[i] += dt; } } if( OPER(Node1)==CONST_OP ) this->DoOp( this ); } if( samefile ) ffmahd( fptr, evthdu, &hdutype, &gParse.status ); else ffclos( fptr, &gParse.status ); return( n ); } static int New_REG( char *fname, int NodeX, int NodeY, char *colNames ) { Node *this, *that0; int type, n, Node0; int Xcol, Ycol, tstat; WCSdata wcs; SAORegion *Rgn; char *cX, *cY; FFSTYPE colVal; if( NodeX==-99 ) { type = ffGetVariable( "X", &colVal ); if( type==COLUMN ) { NodeX = New_Column( (int)colVal.lng ); } else { fferror("Could not build X column for REGFILTER"); return(-1); } } if( NodeY==-99 ) { type = ffGetVariable( "Y", &colVal ); if( type==COLUMN ) { NodeY = New_Column( (int)colVal.lng ); } else { fferror("Could not build Y column for REGFILTER"); return(-1); } } NodeX = New_Unary( DOUBLE, 0, NodeX ); NodeY = New_Unary( DOUBLE, 0, NodeY ); Node0 = Alloc_Node(); /* This will hold the Region Data */ if( NodeX<0 || NodeY<0 || Node0<0 ) return(-1); if( ! (Test_Dims( NodeX, NodeY ) ) ) { fferror("Dimensions of REGFILTER arguments are not compatible"); return (-1); } n = Alloc_Node(); if( n >= 0 ) { this = gParse.Nodes + n; this->nSubNodes = 3; this->SubNodes[0] = Node0; this->SubNodes[1] = NodeX; this->SubNodes[2] = NodeY; this->operation = (int)regfilt_fct; this->DoOp = Do_REG; this->type = BOOLEAN; this->value.nelem = 1; this->value.naxis = 1; this->value.naxes[0] = 1; Copy_Dims(n, NodeX); if( SIZE(NodeX)operation = CONST_OP; that0->DoOp = NULL; /* Identify what columns to use for WCS information */ Xcol = Ycol = 0; if( *colNames ) { /* Use the column names in this string for WCS info */ while( *colNames==' ' ) colNames++; cX = cY = colNames; while( *cY && *cY!=' ' && *cY!=',' ) cY++; if( *cY ) *(cY++) = '\0'; while( *cY==' ' ) cY++; if( !*cY ) { fferror("Could not extract valid pair of column names from REGFILTER"); Free_Last_Node(); return( -1 ); } fits_get_colnum( gParse.def_fptr, CASEINSEN, cX, &Xcol, &gParse.status ); fits_get_colnum( gParse.def_fptr, CASEINSEN, cY, &Ycol, &gParse.status ); if( gParse.status ) { fferror("Could not locate columns indicated for WCS info"); Free_Last_Node(); return( -1 ); } } else { /* Try to find columns used in X/Y expressions */ Xcol = Locate_Col( gParse.Nodes + NodeX ); Ycol = Locate_Col( gParse.Nodes + NodeY ); if( Xcol<0 || Ycol<0 ) { fferror("Found multiple X/Y column references in REGFILTER"); Free_Last_Node(); return( -1 ); } } /* Now, get the WCS info, if it exists, from the indicated columns */ wcs.exists = 0; if( Xcol>0 && Ycol>0 ) { tstat = 0; ffgtcs( gParse.def_fptr, Xcol, Ycol, &wcs.xrefval, &wcs.yrefval, &wcs.xrefpix, &wcs.yrefpix, &wcs.xinc, &wcs.yinc, &wcs.rot, wcs.type, &tstat ); if( tstat==NO_WCS_KEY ) { wcs.exists = 0; } else if( tstat ) { gParse.status = tstat; Free_Last_Node(); return( -1 ); } else { wcs.exists = 1; } } /* Read in Region file */ fits_read_rgnfile( fname, &wcs, &Rgn, &gParse.status ); if( gParse.status ) { Free_Last_Node(); return( -1 ); } that0->value.data.ptr = Rgn; if( OPER(NodeX)==CONST_OP && OPER(NodeY)==CONST_OP ) this->DoOp( this ); } return( n ); } static int New_Vector( int subNode ) { Node *this, *that; int n; n = Alloc_Node(); if( n >= 0 ) { this = gParse.Nodes + n; that = gParse.Nodes + subNode; this->type = that->type; this->nSubNodes = 1; this->SubNodes[0] = subNode; this->operation = '{'; this->DoOp = Do_Vector; } return( n ); } static int Close_Vec( int vecNode ) { Node *this; int n, nelem=0; this = gParse.Nodes + vecNode; for( n=0; n < this->nSubNodes; n++ ) { if( TYPE( this->SubNodes[n] ) != this->type ) { this->SubNodes[n] = New_Unary( this->type, 0, this->SubNodes[n] ); if( this->SubNodes[n]<0 ) return(-1); } nelem += SIZE(this->SubNodes[n]); } this->value.naxis = 1; this->value.nelem = nelem; this->value.naxes[0] = nelem; return( vecNode ); } static int Locate_Col( Node *this ) /* Locate the TABLE column number of any columns in "this" calculation. */ /* Return ZERO if none found, or negative if more than 1 found. */ { Node *that; int i, col=0, newCol, nfound=0; if( this->nSubNodes==0 && this->operation<=0 && this->operation!=CONST_OP ) return gParse.colData[ - this->operation].colnum; for( i=0; inSubNodes; i++ ) { that = gParse.Nodes + this->SubNodes[i]; if( that->operation>0 ) { newCol = Locate_Col( that ); if( newCol<=0 ) { nfound += -newCol; } else { if( !nfound ) { col = newCol; nfound++; } else if( col != newCol ) { nfound++; } } } else if( that->operation!=CONST_OP ) { /* Found a Column */ newCol = gParse.colData[- that->operation].colnum; if( !nfound ) { col = newCol; nfound++; } else if( col != newCol ) { nfound++; } } } if( nfound!=1 ) return( - nfound ); else return( col ); } static int Test_Dims( int Node1, int Node2 ) { Node *that1, *that2; int valid, i; if( Node1<0 || Node2<0 ) return(0); that1 = gParse.Nodes + Node1; that2 = gParse.Nodes + Node2; if( that1->value.nelem==1 || that2->value.nelem==1 ) valid = 1; else if( that1->type==that2->type && that1->value.nelem==that2->value.nelem && that1->value.naxis==that2->value.naxis ) { valid = 1; for( i=0; ivalue.naxis; i++ ) { if( that1->value.naxes[i]!=that2->value.naxes[i] ) valid = 0; } } else valid = 0; return( valid ); } static void Copy_Dims( int Node1, int Node2 ) { Node *that1, *that2; int i; if( Node1<0 || Node2<0 ) return; that1 = gParse.Nodes + Node1; that2 = gParse.Nodes + Node2; that1->value.nelem = that2->value.nelem; that1->value.naxis = that2->value.naxis; for( i=0; ivalue.naxis; i++ ) that1->value.naxes[i] = that2->value.naxes[i]; } /********************************************************************/ /* Routines for actually evaluating the expression start here */ /********************************************************************/ void Evaluate_Parser( long firstRow, long nRows ) /***********************************************************************/ /* Reset the parser for processing another batch of data... */ /* firstRow: Row number of the first element to evaluate */ /* nRows: Number of rows to be processed */ /* Initialize each COLUMN node so that its UNDEF and DATA pointers */ /* point to the appropriate column arrays. */ /* Finally, call Evaluate_Node for final node. */ /***********************************************************************/ { int i, column; long offset, rowOffset; gParse.firstRow = firstRow; gParse.nRows = nRows; /* Reset Column Nodes' pointers to point to right data and UNDEF arrays */ rowOffset = firstRow - gParse.firstDataRow; for( i=0; i 0 || OPER(i) == CONST_OP ) continue; column = -OPER(i); offset = gParse.varData[column].nelem * rowOffset; gParse.Nodes[i].value.undef = gParse.varData[column].undef + offset; switch( gParse.Nodes[i].type ) { case BITSTR: gParse.Nodes[i].value.data.strptr = (char**)gParse.varData[column].data + rowOffset; gParse.Nodes[i].value.undef = NULL; break; case STRING: gParse.Nodes[i].value.data.strptr = (char**)gParse.varData[column].data + rowOffset; gParse.Nodes[i].value.undef = gParse.varData[column].undef + rowOffset; break; case BOOLEAN: gParse.Nodes[i].value.data.logptr = (char*)gParse.varData[column].data + offset; break; case LONG: gParse.Nodes[i].value.data.lngptr = (long*)gParse.varData[column].data + offset; break; case DOUBLE: gParse.Nodes[i].value.data.dblptr = (double*)gParse.varData[column].data + offset; break; } } Evaluate_Node( gParse.resultNode ); } static void Evaluate_Node( int thisNode ) /**********************************************************************/ /* Recursively evaluate thisNode's subNodes, then call one of the */ /* Do_ functions pointed to by thisNode's DoOp element. */ /**********************************************************************/ { Node *this; int i; if( gParse.status ) return; this = gParse.Nodes + thisNode; if( this->operation>0 ) { /* <=0 indicate constants and columns */ i = this->nSubNodes; while( i-- ) { Evaluate_Node( this->SubNodes[i] ); if( gParse.status ) return; } this->DoOp( this ); } } static void Allocate_Ptrs( Node *this ) { long elem, row, size; if( this->type==BITSTR || this->type==STRING ) { this->value.data.strptr = (char**)malloc( gParse.nRows * sizeof(char*) ); if( this->value.data.strptr ) { this->value.data.strptr[0] = (char*)malloc( gParse.nRows * (this->value.nelem+2) * sizeof(char) ); if( this->value.data.strptr[0] ) { row = 0; while( (++row)value.data.strptr[row] = this->value.data.strptr[row-1] + this->value.nelem+1; } if( this->type==STRING ) { this->value.undef = this->value.data.strptr[row-1] + this->value.nelem+1; } else { this->value.undef = NULL; /* BITSTRs don't use undef array */ } } else { gParse.status = MEMORY_ALLOCATION; free( this->value.data.strptr ); } } else { gParse.status = MEMORY_ALLOCATION; } } else { elem = this->value.nelem * gParse.nRows; switch( this->type ) { case DOUBLE: size = sizeof( double ); break; case LONG: size = sizeof( long ); break; case BOOLEAN: size = sizeof( char ); break; default: size = 1; break; } this->value.data.ptr = calloc(size+1, elem); if( this->value.data.ptr==NULL ) { gParse.status = MEMORY_ALLOCATION; } else { this->value.undef = (char *)this->value.data.ptr + elem*size; } } } static void Do_Unary( Node *this ) { Node *that; long elem; that = gParse.Nodes + this->SubNodes[0]; if( that->operation==CONST_OP ) { /* Operating on a constant! */ switch( this->operation ) { case DOUBLE: case FLTCAST: if( that->type==LONG ) this->value.data.dbl = (double)that->value.data.lng; else if( that->type==BOOLEAN ) this->value.data.dbl = ( that->value.data.log ? 1.0 : 0.0 ); break; case LONG: case INTCAST: if( that->type==DOUBLE ) this->value.data.lng = (long)that->value.data.dbl; else if( that->type==BOOLEAN ) this->value.data.lng = ( that->value.data.log ? 1L : 0L ); break; case BOOLEAN: if( that->type==DOUBLE ) this->value.data.log = ( that->value.data.dbl != 0.0 ); else if( that->type==LONG ) this->value.data.log = ( that->value.data.lng != 0L ); break; case UMINUS: if( that->type==DOUBLE ) this->value.data.dbl = - that->value.data.dbl; else if( that->type==LONG ) this->value.data.lng = - that->value.data.lng; break; case NOT: if( that->type==BOOLEAN ) this->value.data.log = ( ! that->value.data.log ); else if( that->type==BITSTR ) bitnot( this->value.data.str, that->value.data.str ); break; } this->operation = CONST_OP; } else { Allocate_Ptrs( this ); if( !gParse.status ) { if( this->type!=BITSTR ) { elem = gParse.nRows; if( this->type!=STRING ) elem *= this->value.nelem; while( elem-- ) this->value.undef[elem] = that->value.undef[elem]; } elem = gParse.nRows * this->value.nelem; switch( this->operation ) { case BOOLEAN: if( that->type==DOUBLE ) while( elem-- ) this->value.data.logptr[elem] = ( that->value.data.dblptr[elem] != 0.0 ); else if( that->type==LONG ) while( elem-- ) this->value.data.logptr[elem] = ( that->value.data.lngptr[elem] != 0L ); break; case DOUBLE: case FLTCAST: if( that->type==LONG ) while( elem-- ) this->value.data.dblptr[elem] = (double)that->value.data.lngptr[elem]; else if( that->type==BOOLEAN ) while( elem-- ) this->value.data.dblptr[elem] = ( that->value.data.logptr[elem] ? 1.0 : 0.0 ); break; case LONG: case INTCAST: if( that->type==DOUBLE ) while( elem-- ) this->value.data.lngptr[elem] = (long)that->value.data.dblptr[elem]; else if( that->type==BOOLEAN ) while( elem-- ) this->value.data.lngptr[elem] = ( that->value.data.logptr[elem] ? 1L : 0L ); break; case UMINUS: if( that->type==DOUBLE ) { while( elem-- ) this->value.data.dblptr[elem] = - that->value.data.dblptr[elem]; } else if( that->type==LONG ) { while( elem-- ) this->value.data.lngptr[elem] = - that->value.data.lngptr[elem]; } break; case NOT: if( that->type==BOOLEAN ) { while( elem-- ) this->value.data.logptr[elem] = ( ! that->value.data.logptr[elem] ); } else if( that->type==BITSTR ) { elem = gParse.nRows; while( elem-- ) bitnot( this->value.data.strptr[elem], that->value.data.strptr[elem] ); } break; } } } if( that->operation>0 ) { free( that->value.data.ptr ); } } static void Do_Offset( Node *this ) { Node *col; long fRow, nRowOverlap, nRowReload, rowOffset; long nelem, elem, offset, nRealElem; int status; col = gParse.Nodes + this->SubNodes[0]; rowOffset = gParse.Nodes[ this->SubNodes[1] ].value.data.lng; Allocate_Ptrs( this ); fRow = gParse.firstRow + rowOffset; if( this->type==STRING || this->type==BITSTR ) nRealElem = 1; else nRealElem = this->value.nelem; nelem = nRealElem; if( fRow < gParse.firstDataRow ) { /* Must fill in data at start of array */ nRowReload = gParse.firstDataRow - fRow; if( nRowReload > gParse.nRows ) nRowReload = gParse.nRows; nRowOverlap = gParse.nRows - nRowReload; offset = 0; /* NULLify any values falling out of bounds */ while( fRow<1 && nRowReload>0 ) { if( this->type == BITSTR ) { nelem = this->value.nelem; this->value.data.strptr[offset][ nelem ] = '\0'; while( nelem-- ) this->value.data.strptr[offset][nelem] = '0'; offset++; } else { while( nelem-- ) this->value.undef[offset++] = 1; } nelem = nRealElem; fRow++; nRowReload--; } } else if( fRow + gParse.nRows > gParse.firstDataRow + gParse.nDataRows ) { /* Must fill in data at end of array */ nRowReload = (fRow+gParse.nRows) - (gParse.firstDataRow+gParse.nDataRows); if( nRowReload>gParse.nRows ) { nRowReload = gParse.nRows; } else { fRow = gParse.firstDataRow + gParse.nDataRows; } nRowOverlap = gParse.nRows - nRowReload; offset = nRowOverlap * nelem; /* NULLify any values falling out of bounds */ elem = gParse.nRows * nelem; while( fRow+nRowReload>gParse.totalRows && nRowReload>0 ) { if( this->type == BITSTR ) { nelem = this->value.nelem; elem--; this->value.data.strptr[elem][ nelem ] = '\0'; while( nelem-- ) this->value.data.strptr[elem][nelem] = '0'; } else { while( nelem-- ) this->value.undef[--elem] = 1; } nelem = nRealElem; nRowReload--; } } else { nRowReload = 0; nRowOverlap = gParse.nRows; offset = 0; } if( nRowReload>0 ) { switch( this->type ) { case BITSTR: case STRING: status = (*gParse.loadData)( -col->operation, fRow, nRowReload, this->value.data.strptr+offset, this->value.undef+offset ); break; case BOOLEAN: status = (*gParse.loadData)( -col->operation, fRow, nRowReload, this->value.data.logptr+offset, this->value.undef+offset ); break; case LONG: status = (*gParse.loadData)( -col->operation, fRow, nRowReload, this->value.data.lngptr+offset, this->value.undef+offset ); break; case DOUBLE: status = (*gParse.loadData)( -col->operation, fRow, nRowReload, this->value.data.dblptr+offset, this->value.undef+offset ); break; } } /* Now copy over the overlapping region, if any */ if( nRowOverlap <= 0 ) return; if( rowOffset>0 ) elem = nRowOverlap * nelem; else elem = gParse.nRows * nelem; offset = nelem * rowOffset; while( nRowOverlap-- && !gParse.status ) { while( nelem-- && !gParse.status ) { elem--; if( this->type != BITSTR ) this->value.undef[elem] = col->value.undef[elem+offset]; switch( this->type ) { case BITSTR: strcpy( this->value.data.strptr[elem ], col->value.data.strptr[elem+offset] ); break; case STRING: strcpy( this->value.data.strptr[elem ], col->value.data.strptr[elem+offset] ); break; case BOOLEAN: this->value.data.logptr[elem] = col->value.data.logptr[elem+offset]; break; case LONG: this->value.data.lngptr[elem] = col->value.data.lngptr[elem+offset]; break; case DOUBLE: this->value.data.dblptr[elem] = col->value.data.dblptr[elem+offset]; break; } } nelem = nRealElem; } } static void Do_BinOp_bit( Node *this ) { Node *that1, *that2; char *sptr1=NULL, *sptr2=NULL; int const1, const2; long rows; that1 = gParse.Nodes + this->SubNodes[0]; that2 = gParse.Nodes + this->SubNodes[1]; const1 = ( that1->operation==CONST_OP ); const2 = ( that2->operation==CONST_OP ); sptr1 = ( const1 ? that1->value.data.str : NULL ); sptr2 = ( const2 ? that2->value.data.str : NULL ); if( const1 && const2 ) { switch( this->operation ) { case NE: this->value.data.log = !bitcmp( sptr1, sptr2 ); break; case EQ: this->value.data.log = bitcmp( sptr1, sptr2 ); break; case GT: case LT: case LTE: case GTE: this->value.data.log = bitlgte( sptr1, this->operation, sptr2 ); break; case '|': bitor( this->value.data.str, sptr1, sptr2 ); break; case '&': bitand( this->value.data.str, sptr1, sptr2 ); break; case '+': strcpy( this->value.data.str, sptr1 ); strcat( this->value.data.str, sptr2 ); break; case ACCUM: this->value.data.lng = 0; while( *sptr1 ) { if ( *sptr1 == '1' ) this->value.data.lng ++; sptr1 ++; } break; } this->operation = CONST_OP; } else { Allocate_Ptrs( this ); if( !gParse.status ) { rows = gParse.nRows; switch( this->operation ) { /* BITSTR comparisons */ case NE: case EQ: case GT: case LT: case LTE: case GTE: while( rows-- ) { if( !const1 ) sptr1 = that1->value.data.strptr[rows]; if( !const2 ) sptr2 = that2->value.data.strptr[rows]; switch( this->operation ) { case NE: this->value.data.logptr[rows] = !bitcmp( sptr1, sptr2 ); break; case EQ: this->value.data.logptr[rows] = bitcmp( sptr1, sptr2 ); break; case GT: case LT: case LTE: case GTE: this->value.data.logptr[rows] = bitlgte( sptr1, this->operation, sptr2 ); break; } this->value.undef[rows] = 0; } break; /* BITSTR AND/ORs ... no UNDEFS in or out */ case '|': case '&': case '+': while( rows-- ) { if( !const1 ) sptr1 = that1->value.data.strptr[rows]; if( !const2 ) sptr2 = that2->value.data.strptr[rows]; if( this->operation=='|' ) bitor( this->value.data.strptr[rows], sptr1, sptr2 ); else if( this->operation=='&' ) bitand( this->value.data.strptr[rows], sptr1, sptr2 ); else { strcpy( this->value.data.strptr[rows], sptr1 ); strcat( this->value.data.strptr[rows], sptr2 ); } } break; /* Accumulate 1 bits */ case ACCUM: { long i, previous, curr; previous = that2->value.data.lng; /* Cumulative sum of this chunk */ for (i=0; ivalue.data.strptr[i]; for (curr = 0; *sptr1; sptr1 ++) { if ( *sptr1 == '1' ) curr ++; } previous += curr; this->value.data.lngptr[i] = previous; this->value.undef[i] = 0; } /* Store final cumulant for next pass */ that2->value.data.lng = previous; } } } } if( that1->operation>0 ) { free( that1->value.data.strptr[0] ); free( that1->value.data.strptr ); } if( that2->operation>0 ) { free( that2->value.data.strptr[0] ); free( that2->value.data.strptr ); } } static void Do_BinOp_str( Node *this ) { Node *that1, *that2; char *sptr1, *sptr2, null1=0, null2=0; int const1, const2, val; long rows; that1 = gParse.Nodes + this->SubNodes[0]; that2 = gParse.Nodes + this->SubNodes[1]; const1 = ( that1->operation==CONST_OP ); const2 = ( that2->operation==CONST_OP ); sptr1 = ( const1 ? that1->value.data.str : NULL ); sptr2 = ( const2 ? that2->value.data.str : NULL ); if( const1 && const2 ) { /* Result is a constant */ switch( this->operation ) { /* Compare Strings */ case NE: case EQ: val = ( FSTRCMP( sptr1, sptr2 ) == 0 ); this->value.data.log = ( this->operation==EQ ? val : !val ); break; case GT: this->value.data.log = ( FSTRCMP( sptr1, sptr2 ) > 0 ); break; case LT: this->value.data.log = ( FSTRCMP( sptr1, sptr2 ) < 0 ); break; case GTE: this->value.data.log = ( FSTRCMP( sptr1, sptr2 ) >= 0 ); break; case LTE: this->value.data.log = ( FSTRCMP( sptr1, sptr2 ) <= 0 ); break; /* Concat Strings */ case '+': strcpy( this->value.data.str, sptr1 ); strcat( this->value.data.str, sptr2 ); break; } this->operation = CONST_OP; } else { /* Not a constant */ Allocate_Ptrs( this ); if( !gParse.status ) { rows = gParse.nRows; switch( this->operation ) { /* Compare Strings */ case NE: case EQ: while( rows-- ) { if( !const1 ) null1 = that1->value.undef[rows]; if( !const2 ) null2 = that2->value.undef[rows]; this->value.undef[rows] = (null1 || null2); if( ! this->value.undef[rows] ) { if( !const1 ) sptr1 = that1->value.data.strptr[rows]; if( !const2 ) sptr2 = that2->value.data.strptr[rows]; val = ( FSTRCMP( sptr1, sptr2 ) == 0 ); this->value.data.logptr[rows] = ( this->operation==EQ ? val : !val ); } } break; case GT: case LT: while( rows-- ) { if( !const1 ) null1 = that1->value.undef[rows]; if( !const2 ) null2 = that2->value.undef[rows]; this->value.undef[rows] = (null1 || null2); if( ! this->value.undef[rows] ) { if( !const1 ) sptr1 = that1->value.data.strptr[rows]; if( !const2 ) sptr2 = that2->value.data.strptr[rows]; val = ( FSTRCMP( sptr1, sptr2 ) ); this->value.data.logptr[rows] = ( this->operation==GT ? val>0 : val<0 ); } } break; case GTE: case LTE: while( rows-- ) { if( !const1 ) null1 = that1->value.undef[rows]; if( !const2 ) null2 = that2->value.undef[rows]; this->value.undef[rows] = (null1 || null2); if( ! this->value.undef[rows] ) { if( !const1 ) sptr1 = that1->value.data.strptr[rows]; if( !const2 ) sptr2 = that2->value.data.strptr[rows]; val = ( FSTRCMP( sptr1, sptr2 ) ); this->value.data.logptr[rows] = ( this->operation==GTE ? val>=0 : val<=0 ); } } break; /* Concat Strings */ case '+': while( rows-- ) { if( !const1 ) null1 = that1->value.undef[rows]; if( !const2 ) null2 = that2->value.undef[rows]; this->value.undef[rows] = (null1 || null2); if( ! this->value.undef[rows] ) { if( !const1 ) sptr1 = that1->value.data.strptr[rows]; if( !const2 ) sptr2 = that2->value.data.strptr[rows]; strcpy( this->value.data.strptr[rows], sptr1 ); strcat( this->value.data.strptr[rows], sptr2 ); } } break; } } } if( that1->operation>0 ) { free( that1->value.data.strptr[0] ); free( that1->value.data.strptr ); } if( that2->operation>0 ) { free( that2->value.data.strptr[0] ); free( that2->value.data.strptr ); } } static void Do_BinOp_log( Node *this ) { Node *that1, *that2; int vector1, vector2; char val1=0, val2=0, null1=0, null2=0; long rows, nelem, elem; that1 = gParse.Nodes + this->SubNodes[0]; that2 = gParse.Nodes + this->SubNodes[1]; vector1 = ( that1->operation!=CONST_OP ); if( vector1 ) vector1 = that1->value.nelem; else { val1 = that1->value.data.log; } vector2 = ( that2->operation!=CONST_OP ); if( vector2 ) vector2 = that2->value.nelem; else { val2 = that2->value.data.log; } if( !vector1 && !vector2 ) { /* Result is a constant */ switch( this->operation ) { case OR: this->value.data.log = (val1 || val2); break; case AND: this->value.data.log = (val1 && val2); break; case EQ: this->value.data.log = ( (val1 && val2) || (!val1 && !val2) ); break; case NE: this->value.data.log = ( (val1 && !val2) || (!val1 && val2) ); break; case ACCUM: this->value.data.lng = val1; break; } this->operation=CONST_OP; } else if (this->operation == ACCUM) { long i, previous, curr; rows = gParse.nRows; nelem = this->value.nelem; elem = this->value.nelem * rows; Allocate_Ptrs( this ); if( !gParse.status ) { previous = that2->value.data.lng; /* Cumulative sum of this chunk */ for (i=0; ivalue.undef[i]) { curr = that1->value.data.logptr[i]; previous += curr; } this->value.data.lngptr[i] = previous; this->value.undef[i] = 0; } /* Store final cumulant for next pass */ that2->value.data.lng = previous; } } else { rows = gParse.nRows; nelem = this->value.nelem; elem = this->value.nelem * rows; Allocate_Ptrs( this ); if( !gParse.status ) { if (this->operation == ACCUM) { long i, previous, curr; previous = that2->value.data.lng; /* Cumulative sum of this chunk */ for (i=0; ivalue.undef[i]) { curr = that1->value.data.logptr[i]; previous += curr; } this->value.data.lngptr[i] = previous; this->value.undef[i] = 0; } /* Store final cumulant for next pass */ that2->value.data.lng = previous; } while( rows-- ) { while( nelem-- ) { elem--; if( vector1>1 ) { val1 = that1->value.data.logptr[elem]; null1 = that1->value.undef[elem]; } else if( vector1 ) { val1 = that1->value.data.logptr[rows]; null1 = that1->value.undef[rows]; } if( vector2>1 ) { val2 = that2->value.data.logptr[elem]; null2 = that2->value.undef[elem]; } else if( vector2 ) { val2 = that2->value.data.logptr[rows]; null2 = that2->value.undef[rows]; } this->value.undef[elem] = (null1 || null2); switch( this->operation ) { case OR: /* This is more complicated than others to suppress UNDEFs */ /* in those cases where the other argument is DEF && TRUE */ if( !null1 && !null2 ) { this->value.data.logptr[elem] = (val1 || val2); } else if( (null1 && !null2 && val2) || ( !null1 && null2 && val1 ) ) { this->value.data.logptr[elem] = 1; this->value.undef[elem] = 0; } break; case AND: /* This is more complicated than others to suppress UNDEFs */ /* in those cases where the other argument is DEF && FALSE */ if( !null1 && !null2 ) { this->value.data.logptr[elem] = (val1 && val2); } else if( (null1 && !null2 && !val2) || ( !null1 && null2 && !val1 ) ) { this->value.data.logptr[elem] = 0; this->value.undef[elem] = 0; } break; case EQ: this->value.data.logptr[elem] = ( (val1 && val2) || (!val1 && !val2) ); break; case NE: this->value.data.logptr[elem] = ( (val1 && !val2) || (!val1 && val2) ); break; } } nelem = this->value.nelem; } } } if( that1->operation>0 ) { free( that1->value.data.ptr ); } if( that2->operation>0 ) { free( that2->value.data.ptr ); } } static void Do_BinOp_lng( Node *this ) { Node *that1, *that2; int vector1, vector2; long val1=0, val2=0; char null1=0, null2=0; long rows, nelem, elem; that1 = gParse.Nodes + this->SubNodes[0]; that2 = gParse.Nodes + this->SubNodes[1]; vector1 = ( that1->operation!=CONST_OP ); if( vector1 ) vector1 = that1->value.nelem; else { val1 = that1->value.data.lng; } vector2 = ( that2->operation!=CONST_OP ); if( vector2 ) vector2 = that2->value.nelem; else { val2 = that2->value.data.lng; } if( !vector1 && !vector2 ) { /* Result is a constant */ switch( this->operation ) { case '~': /* Treat as == for LONGS */ case EQ: this->value.data.log = (val1 == val2); break; case NE: this->value.data.log = (val1 != val2); break; case GT: this->value.data.log = (val1 > val2); break; case LT: this->value.data.log = (val1 < val2); break; case LTE: this->value.data.log = (val1 <= val2); break; case GTE: this->value.data.log = (val1 >= val2); break; case '+': this->value.data.lng = (val1 + val2); break; case '-': this->value.data.lng = (val1 - val2); break; case '*': this->value.data.lng = (val1 * val2); break; case '%': if( val2 ) this->value.data.lng = (val1 % val2); else fferror("Divide by Zero"); break; case '/': if( val2 ) this->value.data.lng = (val1 / val2); else fferror("Divide by Zero"); break; case POWER: this->value.data.lng = (long)pow((double)val1,(double)val2); break; case ACCUM: this->value.data.lng = val1; break; case DIFF: this->value.data.lng = 0; break; } this->operation=CONST_OP; } else if ((this->operation == ACCUM) || (this->operation == DIFF)) { long i, previous, curr; long undef; rows = gParse.nRows; nelem = this->value.nelem; elem = this->value.nelem * rows; Allocate_Ptrs( this ); if( !gParse.status ) { previous = that2->value.data.lng; undef = (long) that2->value.undef; if (this->operation == ACCUM) { /* Cumulative sum of this chunk */ for (i=0; ivalue.undef[i]) { curr = that1->value.data.lngptr[i]; previous += curr; } this->value.data.lngptr[i] = previous; this->value.undef[i] = 0; } } else { /* Sequential difference for this chunk */ for (i=0; ivalue.data.lngptr[i]; if (that1->value.undef[i] || undef) { /* Either this, or previous, value was undefined */ this->value.data.lngptr[i] = 0; this->value.undef[i] = 1; } else { /* Both defined, we are okay! */ this->value.data.lngptr[i] = curr - previous; this->value.undef[i] = 0; } previous = curr; undef = that1->value.undef[i]; } } /* Store final cumulant for next pass */ that2->value.data.lng = previous; that2->value.undef = (char *) undef; /* XXX evil, but no harm here */ } } else { rows = gParse.nRows; nelem = this->value.nelem; elem = this->value.nelem * rows; Allocate_Ptrs( this ); while( rows-- && !gParse.status ) { while( nelem-- && !gParse.status ) { elem--; if( vector1>1 ) { val1 = that1->value.data.lngptr[elem]; null1 = that1->value.undef[elem]; } else if( vector1 ) { val1 = that1->value.data.lngptr[rows]; null1 = that1->value.undef[rows]; } if( vector2>1 ) { val2 = that2->value.data.lngptr[elem]; null2 = that2->value.undef[elem]; } else if( vector2 ) { val2 = that2->value.data.lngptr[rows]; null2 = that2->value.undef[rows]; } this->value.undef[elem] = (null1 || null2); switch( this->operation ) { case '~': /* Treat as == for LONGS */ case EQ: this->value.data.logptr[elem] = (val1 == val2); break; case NE: this->value.data.logptr[elem] = (val1 != val2); break; case GT: this->value.data.logptr[elem] = (val1 > val2); break; case LT: this->value.data.logptr[elem] = (val1 < val2); break; case LTE: this->value.data.logptr[elem] = (val1 <= val2); break; case GTE: this->value.data.logptr[elem] = (val1 >= val2); break; case '+': this->value.data.lngptr[elem] = (val1 + val2); break; case '-': this->value.data.lngptr[elem] = (val1 - val2); break; case '*': this->value.data.lngptr[elem] = (val1 * val2); break; case '%': if( val2 ) this->value.data.lngptr[elem] = (val1 % val2); else { this->value.data.lngptr[elem] = 0; this->value.undef[elem] = 1; } break; case '/': if( val2 ) this->value.data.lngptr[elem] = (val1 / val2); else { this->value.data.lngptr[elem] = 0; this->value.undef[elem] = 1; } break; case POWER: this->value.data.lngptr[elem] = (long)pow((double)val1,(double)val2); break; } } nelem = this->value.nelem; } } if( that1->operation>0 ) { free( that1->value.data.ptr ); } if( that2->operation>0 ) { free( that2->value.data.ptr ); } } static void Do_BinOp_dbl( Node *this ) { Node *that1, *that2; int vector1, vector2; double val1=0.0, val2=0.0; char null1=0, null2=0; long rows, nelem, elem; that1 = gParse.Nodes + this->SubNodes[0]; that2 = gParse.Nodes + this->SubNodes[1]; vector1 = ( that1->operation!=CONST_OP ); if( vector1 ) vector1 = that1->value.nelem; else { val1 = that1->value.data.dbl; } vector2 = ( that2->operation!=CONST_OP ); if( vector2 ) vector2 = that2->value.nelem; else { val2 = that2->value.data.dbl; } if( !vector1 && !vector2 ) { /* Result is a constant */ switch( this->operation ) { case '~': this->value.data.log = ( fabs(val1-val2) < APPROX ); break; case EQ: this->value.data.log = (val1 == val2); break; case NE: this->value.data.log = (val1 != val2); break; case GT: this->value.data.log = (val1 > val2); break; case LT: this->value.data.log = (val1 < val2); break; case LTE: this->value.data.log = (val1 <= val2); break; case GTE: this->value.data.log = (val1 >= val2); break; case '+': this->value.data.dbl = (val1 + val2); break; case '-': this->value.data.dbl = (val1 - val2); break; case '*': this->value.data.dbl = (val1 * val2); break; case '%': if( val2 ) this->value.data.dbl = val1 - val2*((int)(val1/val2)); else fferror("Divide by Zero"); break; case '/': if( val2 ) this->value.data.dbl = (val1 / val2); else fferror("Divide by Zero"); break; case POWER: this->value.data.dbl = (double)pow(val1,val2); break; case ACCUM: this->value.data.dbl = val1; break; case DIFF: this->value.data.dbl = 0; break; } this->operation=CONST_OP; } else if ((this->operation == ACCUM) || (this->operation == DIFF)) { long i; long undef; double previous, curr; rows = gParse.nRows; nelem = this->value.nelem; elem = this->value.nelem * rows; Allocate_Ptrs( this ); if( !gParse.status ) { previous = that2->value.data.dbl; undef = (long) that2->value.undef; if (this->operation == ACCUM) { /* Cumulative sum of this chunk */ for (i=0; ivalue.undef[i]) { curr = that1->value.data.dblptr[i]; previous += curr; } this->value.data.dblptr[i] = previous; this->value.undef[i] = 0; } } else { /* Sequential difference for this chunk */ for (i=0; ivalue.data.dblptr[i]; if (that1->value.undef[i] || undef) { /* Either this, or previous, value was undefined */ this->value.data.dblptr[i] = 0; this->value.undef[i] = 1; } else { /* Both defined, we are okay! */ this->value.data.dblptr[i] = curr - previous; this->value.undef[i] = 0; } previous = curr; undef = that1->value.undef[i]; } } /* Store final cumulant for next pass */ that2->value.data.dbl = previous; that2->value.undef = (char *) undef; /* XXX evil, but no harm here */ } } else { rows = gParse.nRows; nelem = this->value.nelem; elem = this->value.nelem * rows; Allocate_Ptrs( this ); while( rows-- && !gParse.status ) { while( nelem-- && !gParse.status ) { elem--; if( vector1>1 ) { val1 = that1->value.data.dblptr[elem]; null1 = that1->value.undef[elem]; } else if( vector1 ) { val1 = that1->value.data.dblptr[rows]; null1 = that1->value.undef[rows]; } if( vector2>1 ) { val2 = that2->value.data.dblptr[elem]; null2 = that2->value.undef[elem]; } else if( vector2 ) { val2 = that2->value.data.dblptr[rows]; null2 = that2->value.undef[rows]; } this->value.undef[elem] = (null1 || null2); switch( this->operation ) { case '~': this->value.data.logptr[elem] = ( fabs(val1-val2) < APPROX ); break; case EQ: this->value.data.logptr[elem] = (val1 == val2); break; case NE: this->value.data.logptr[elem] = (val1 != val2); break; case GT: this->value.data.logptr[elem] = (val1 > val2); break; case LT: this->value.data.logptr[elem] = (val1 < val2); break; case LTE: this->value.data.logptr[elem] = (val1 <= val2); break; case GTE: this->value.data.logptr[elem] = (val1 >= val2); break; case '+': this->value.data.dblptr[elem] = (val1 + val2); break; case '-': this->value.data.dblptr[elem] = (val1 - val2); break; case '*': this->value.data.dblptr[elem] = (val1 * val2); break; case '%': if( val2 ) this->value.data.dblptr[elem] = val1 - val2*((int)(val1/val2)); else { this->value.data.dblptr[elem] = 0.0; this->value.undef[elem] = 1; } break; case '/': if( val2 ) this->value.data.dblptr[elem] = (val1 / val2); else { this->value.data.dblptr[elem] = 0.0; this->value.undef[elem] = 1; } break; case POWER: this->value.data.dblptr[elem] = (double)pow(val1,val2); break; } } nelem = this->value.nelem; } } if( that1->operation>0 ) { free( that1->value.data.ptr ); } if( that2->operation>0 ) { free( that2->value.data.ptr ); } } /* * This Quickselect routine is based on the algorithm described in * "Numerical recipes in C", Second Edition, * Cambridge University Press, 1992, Section 8.5, ISBN 0-521-43108-5 * This code by Nicolas Devillard - 1998. Public domain. * http://ndevilla.free.fr/median/median/src/quickselect.c */ #define ELEM_SWAP(a,b) { register long t=(a);(a)=(b);(b)=t; } /* * qselect_median_lng - select the median value of a long array * * This routine selects the median value of the long integer array * arr[]. If there are an even number of elements, the "lower median" * is selected. * * The array arr[] is scrambled, so users must operate on a scratch * array if they wish the values to be preserved. * * long arr[] - array of values * int n - number of elements in arr * * RETURNS: the lower median value of arr[] * */ long qselect_median_lng(long arr[], int n) { int low, high ; int median; int middle, ll, hh; low = 0 ; high = n-1 ; median = (low + high) / 2; for (;;) { if (high <= low) { /* One element only */ return arr[median]; } if (high == low + 1) { /* Two elements only */ if (arr[low] > arr[high]) ELEM_SWAP(arr[low], arr[high]) ; return arr[median]; } /* Find median of low, middle and high items; swap into position low */ middle = (low + high) / 2; if (arr[middle] > arr[high]) ELEM_SWAP(arr[middle], arr[high]) ; if (arr[low] > arr[high]) ELEM_SWAP(arr[low], arr[high]) ; if (arr[middle] > arr[low]) ELEM_SWAP(arr[middle], arr[low]) ; /* Swap low item (now in position middle) into position (low+1) */ ELEM_SWAP(arr[middle], arr[low+1]) ; /* Nibble from each end towards middle, swapping items when stuck */ ll = low + 1; hh = high; for (;;) { do ll++; while (arr[low] > arr[ll]) ; do hh--; while (arr[hh] > arr[low]) ; if (hh < ll) break; ELEM_SWAP(arr[ll], arr[hh]) ; } /* Swap middle item (in position low) back into correct position */ ELEM_SWAP(arr[low], arr[hh]) ; /* Re-set active partition */ if (hh <= median) low = ll; if (hh >= median) high = hh - 1; } } #undef ELEM_SWAP #define ELEM_SWAP(a,b) { register double t=(a);(a)=(b);(b)=t; } /* * qselect_median_dbl - select the median value of a double array * * This routine selects the median value of the double array * arr[]. If there are an even number of elements, the "lower median" * is selected. * * The array arr[] is scrambled, so users must operate on a scratch * array if they wish the values to be preserved. * * double arr[] - array of values * int n - number of elements in arr * * RETURNS: the lower median value of arr[] * */ double qselect_median_dbl(double arr[], int n) { int low, high ; int median; int middle, ll, hh; low = 0 ; high = n-1 ; median = (low + high) / 2; for (;;) { if (high <= low) { /* One element only */ return arr[median] ; } if (high == low + 1) { /* Two elements only */ if (arr[low] > arr[high]) ELEM_SWAP(arr[low], arr[high]) ; return arr[median] ; } /* Find median of low, middle and high items; swap into position low */ middle = (low + high) / 2; if (arr[middle] > arr[high]) ELEM_SWAP(arr[middle], arr[high]) ; if (arr[low] > arr[high]) ELEM_SWAP(arr[low], arr[high]) ; if (arr[middle] > arr[low]) ELEM_SWAP(arr[middle], arr[low]) ; /* Swap low item (now in position middle) into position (low+1) */ ELEM_SWAP(arr[middle], arr[low+1]) ; /* Nibble from each end towards middle, swapping items when stuck */ ll = low + 1; hh = high; for (;;) { do ll++; while (arr[low] > arr[ll]) ; do hh--; while (arr[hh] > arr[low]) ; if (hh < ll) break; ELEM_SWAP(arr[ll], arr[hh]) ; } /* Swap middle item (in position low) back into correct position */ ELEM_SWAP(arr[low], arr[hh]) ; /* Re-set active partition */ if (hh <= median) low = ll; if (hh >= median) high = hh - 1; } } #undef ELEM_SWAP /* * angsep_calc - compute angular separation between celestial coordinates * * This routine computes the angular separation between to coordinates * on the celestial sphere (i.e. RA and Dec). Note that all units are * in DEGREES, unlike the other trig functions in the calculator. * * double ra1, dec1 - RA and Dec of the first position in degrees * double ra2, dec2 - RA and Dec of the second position in degrees * * RETURNS: (double) angular separation in degrees * */ double angsep_calc(double ra1, double dec1, double ra2, double dec2) { double cd; static double deg = 0; double a, sdec, sra; if (deg == 0) deg = ((double)4)*atan((double)1)/((double)180); /* deg = 1.0; **** UNCOMMENT IF YOU WANT RADIANS */ /* This (commented out) algorithm uses the Low of Cosines, which becomes unstable for angles less than 0.1 arcsec. cd = sin(dec1*deg)*sin(dec2*deg) + cos(dec1*deg)*cos(dec2*deg)*cos((ra1-ra2)*deg); if (cd < (-1)) cd = -1; if (cd > (+1)) cd = +1; return acos(cd)/deg; */ /* The algorithm is the law of Haversines. This algorithm is stable even when the points are close together. The normal Law of Cosines fails for angles around 0.1 arcsec. */ sra = sin( (ra2 - ra1)*deg / 2 ); sdec = sin( (dec2 - dec1)*deg / 2); a = sdec*sdec + cos(dec1*deg)*cos(dec2*deg)*sra*sra; /* Sanity checking to avoid a range error in the sqrt()'s below */ if (a < 0) { a = 0; } if (a > 1) { a = 1; } return 2.0*atan2(sqrt(a), sqrt(1.0 - a)) / deg; } static double ran1() { static double dval = 0.0; double rndVal; if (dval == 0.0) { if( rand()<32768 && rand()<32768 ) dval = 32768.0; else dval = 2147483648.0; } rndVal = (double)rand(); while( rndVal > dval ) dval *= 2.0; return rndVal/dval; } /* Gaussian deviate routine from Numerical Recipes */ static double gasdev() { static int iset = 0; static double gset; double fac, rsq, v1, v2; if (iset == 0) { do { v1 = 2.0*ran1()-1.0; v2 = 2.0*ran1()-1.0; rsq = v1*v1 + v2*v2; } while (rsq >= 1.0 || rsq == 0.0); fac = sqrt(-2.0*log(rsq)/rsq); gset = v1*fac; iset = 1; return v2*fac; } else { iset = 0; return gset; } } /* lgamma function - from Numerical Recipes */ float gammaln(float xx) /* Returns the value ln Gamma[(xx)] for xx > 0. */ { /* Internal arithmetic will be done in double precision, a nicety that you can omit if five-figure accuracy is good enough. */ double x,y,tmp,ser; static double cof[6]={76.18009172947146,-86.50532032941677, 24.01409824083091,-1.231739572450155, 0.1208650973866179e-2,-0.5395239384953e-5}; int j; y=x=xx; tmp=x+5.5; tmp -= (x+0.5)*log(tmp); ser=1.000000000190015; for (j=0;j<=5;j++) ser += cof[j]/++y; return (float) -tmp+log(2.5066282746310005*ser/x); } /* Poisson deviate - derived from Numerical Recipes */ static long poidev(double xm) { static double sq, alxm, g, oldm = -1.0; static double pi = 0; double em, t, y; if (pi == 0) pi = ((double)4)*atan((double)1); if (xm < 20.0) { if (xm != oldm) { oldm = xm; g = exp(-xm); } em = -1; t = 1.0; do { em += 1; t *= ran1(); } while (t > g); } else { if (xm != oldm) { oldm = xm; sq = sqrt(2.0*xm); alxm = log(xm); g = xm*alxm-gammaln( (float) (xm+1.0)); } do { do { y = tan(pi*ran1()); em = sq*y+xm; } while (em < 0.0); em = floor(em); t = 0.9*(1.0+y*y)*exp(em*alxm-gammaln( (float) (em+1.0) )-g); } while (ran1() > t); } /* Return integer version */ return (long int) floor(em+0.5); } static void Do_Func( Node *this ) { Node *theParams[MAXSUBS]; int vector[MAXSUBS], allConst; lval pVals[MAXSUBS]; char pNull[MAXSUBS]; long ival; double dval; int i, valInit; long row, elem, nelem; i = this->nSubNodes; allConst = 1; while( i-- ) { theParams[i] = gParse.Nodes + this->SubNodes[i]; vector[i] = ( theParams[i]->operation!=CONST_OP ); if( vector[i] ) { allConst = 0; vector[i] = theParams[i]->value.nelem; } else { if( theParams[i]->type==DOUBLE ) { pVals[i].data.dbl = theParams[i]->value.data.dbl; } else if( theParams[i]->type==LONG ) { pVals[i].data.lng = theParams[i]->value.data.lng; } else if( theParams[i]->type==BOOLEAN ) { pVals[i].data.log = theParams[i]->value.data.log; } else strcpy(pVals[i].data.str, theParams[i]->value.data.str); pNull[i] = 0; } } if( this->nSubNodes==0 ) allConst = 0; /* These do produce scalars */ /* Random numbers are *never* constant !! */ if( this->operation == poirnd_fct ) allConst = 0; if( this->operation == gasrnd_fct ) allConst = 0; if( this->operation == rnd_fct ) allConst = 0; if( allConst ) { switch( this->operation ) { /* Non-Trig single-argument functions */ case sum_fct: if( theParams[0]->type==BOOLEAN ) this->value.data.lng = ( pVals[0].data.log ? 1 : 0 ); else if( theParams[0]->type==LONG ) this->value.data.lng = pVals[0].data.lng; else if( theParams[0]->type==DOUBLE ) this->value.data.dbl = pVals[0].data.dbl; else if( theParams[0]->type==BITSTR ) strcpy(this->value.data.str, pVals[0].data.str); break; case average_fct: if( theParams[0]->type==LONG ) this->value.data.dbl = pVals[0].data.lng; else if( theParams[0]->type==DOUBLE ) this->value.data.dbl = pVals[0].data.dbl; break; case stddev_fct: this->value.data.dbl = 0; /* Standard deviation of a constant = 0 */ break; case median_fct: if( theParams[0]->type==BOOLEAN ) this->value.data.lng = ( pVals[0].data.log ? 1 : 0 ); else if( theParams[0]->type==LONG ) this->value.data.lng = pVals[0].data.lng; else this->value.data.dbl = pVals[0].data.dbl; break; case poirnd_fct: if( theParams[0]->type==DOUBLE ) this->value.data.lng = poidev(pVals[0].data.dbl); else this->value.data.lng = poidev(pVals[0].data.lng); break; case abs_fct: if( theParams[0]->type==DOUBLE ) { dval = pVals[0].data.dbl; this->value.data.dbl = (dval>0.0 ? dval : -dval); } else { ival = pVals[0].data.lng; this->value.data.lng = (ival> 0 ? ival : -ival); } break; /* Special Null-Handling Functions */ case nonnull_fct: this->value.data.lng = 1; /* Constants are always 1-element and defined */ break; case isnull_fct: /* Constants are always defined */ this->value.data.log = 0; break; case defnull_fct: if( this->type==BOOLEAN ) this->value.data.log = pVals[0].data.log; else if( this->type==LONG ) this->value.data.lng = pVals[0].data.lng; else if( this->type==DOUBLE ) this->value.data.dbl = pVals[0].data.dbl; else if( this->type==STRING ) strcpy(this->value.data.str,pVals[0].data.str); break; /* Math functions with 1 double argument */ case sin_fct: this->value.data.dbl = sin( pVals[0].data.dbl ); break; case cos_fct: this->value.data.dbl = cos( pVals[0].data.dbl ); break; case tan_fct: this->value.data.dbl = tan( pVals[0].data.dbl ); break; case asin_fct: dval = pVals[0].data.dbl; if( dval<-1.0 || dval>1.0 ) fferror("Out of range argument to arcsin"); else this->value.data.dbl = asin( dval ); break; case acos_fct: dval = pVals[0].data.dbl; if( dval<-1.0 || dval>1.0 ) fferror("Out of range argument to arccos"); else this->value.data.dbl = acos( dval ); break; case atan_fct: this->value.data.dbl = atan( pVals[0].data.dbl ); break; case sinh_fct: this->value.data.dbl = sinh( pVals[0].data.dbl ); break; case cosh_fct: this->value.data.dbl = cosh( pVals[0].data.dbl ); break; case tanh_fct: this->value.data.dbl = tanh( pVals[0].data.dbl ); break; case exp_fct: this->value.data.dbl = exp( pVals[0].data.dbl ); break; case log_fct: dval = pVals[0].data.dbl; if( dval<=0.0 ) fferror("Out of range argument to log"); else this->value.data.dbl = log( dval ); break; case log10_fct: dval = pVals[0].data.dbl; if( dval<=0.0 ) fferror("Out of range argument to log10"); else this->value.data.dbl = log10( dval ); break; case sqrt_fct: dval = pVals[0].data.dbl; if( dval<0.0 ) fferror("Out of range argument to sqrt"); else this->value.data.dbl = sqrt( dval ); break; case ceil_fct: this->value.data.dbl = ceil( pVals[0].data.dbl ); break; case floor_fct: this->value.data.dbl = floor( pVals[0].data.dbl ); break; case round_fct: this->value.data.dbl = floor( pVals[0].data.dbl + 0.5 ); break; /* Two-argument Trig Functions */ case atan2_fct: this->value.data.dbl = atan2( pVals[0].data.dbl, pVals[1].data.dbl ); break; /* Four-argument ANGSEP function */ case angsep_fct: this->value.data.dbl = angsep_calc(pVals[0].data.dbl, pVals[1].data.dbl, pVals[2].data.dbl, pVals[3].data.dbl); /* Min/Max functions taking 1 or 2 arguments */ case min1_fct: /* No constant vectors! */ if( this->type == DOUBLE ) this->value.data.dbl = pVals[0].data.dbl; else if( this->type == LONG ) this->value.data.lng = pVals[0].data.lng; else if( this->type == BITSTR ) strcpy(this->value.data.str, pVals[0].data.str); break; case min2_fct: if( this->type == DOUBLE ) this->value.data.dbl = minvalue( pVals[0].data.dbl, pVals[1].data.dbl ); else if( this->type == LONG ) this->value.data.lng = minvalue( pVals[0].data.lng, pVals[1].data.lng ); break; case max1_fct: /* No constant vectors! */ if( this->type == DOUBLE ) this->value.data.dbl = pVals[0].data.dbl; else if( this->type == LONG ) this->value.data.lng = pVals[0].data.lng; else if( this->type == BITSTR ) strcpy(this->value.data.str, pVals[0].data.str); break; case max2_fct: if( this->type == DOUBLE ) this->value.data.dbl = maxvalue( pVals[0].data.dbl, pVals[1].data.dbl ); else if( this->type == LONG ) this->value.data.lng = maxvalue( pVals[0].data.lng, pVals[1].data.lng ); break; /* Boolean SAO region Functions... scalar or vector dbls */ case near_fct: this->value.data.log = bnear( pVals[0].data.dbl, pVals[1].data.dbl, pVals[2].data.dbl ); break; case circle_fct: this->value.data.log = circle( pVals[0].data.dbl, pVals[1].data.dbl, pVals[2].data.dbl, pVals[3].data.dbl, pVals[4].data.dbl ); break; case box_fct: this->value.data.log = saobox( pVals[0].data.dbl, pVals[1].data.dbl, pVals[2].data.dbl, pVals[3].data.dbl, pVals[4].data.dbl, pVals[5].data.dbl, pVals[6].data.dbl ); break; case elps_fct: this->value.data.log = ellipse( pVals[0].data.dbl, pVals[1].data.dbl, pVals[2].data.dbl, pVals[3].data.dbl, pVals[4].data.dbl, pVals[5].data.dbl, pVals[6].data.dbl ); break; /* C Conditional expression: bool ? expr : expr */ case ifthenelse_fct: switch( this->type ) { case BOOLEAN: this->value.data.log = ( pVals[2].data.log ? pVals[0].data.log : pVals[1].data.log ); break; case LONG: this->value.data.lng = ( pVals[2].data.log ? pVals[0].data.lng : pVals[1].data.lng ); break; case DOUBLE: this->value.data.dbl = ( pVals[2].data.log ? pVals[0].data.dbl : pVals[1].data.dbl ); break; case STRING: strcpy(this->value.data.str, ( pVals[2].data.log ? pVals[0].data.str : pVals[1].data.str ) ); break; } break; /* String functions */ case strmid_fct: cstrmid(this->value.data.str, this->value.nelem, pVals[0].data.str, pVals[0].nelem, pVals[1].data.lng); break; case strpos_fct: { char *res = strstr(pVals[0].data.str, pVals[1].data.str); if (res == NULL) { this->value.data.lng = 0; } else { this->value.data.lng = (res - pVals[0].data.str) + 1; } break; } } this->operation = CONST_OP; } else { Allocate_Ptrs( this ); row = gParse.nRows; elem = row * this->value.nelem; if( !gParse.status ) { switch( this->operation ) { /* Special functions with no arguments */ case row_fct: while( row-- ) { this->value.data.lngptr[row] = gParse.firstRow + row; this->value.undef[row] = 0; } break; case null_fct: if( this->type==LONG ) { while( row-- ) { this->value.data.lngptr[row] = 0; this->value.undef[row] = 1; } } else if( this->type==STRING ) { while( row-- ) { this->value.data.strptr[row][0] = '\0'; this->value.undef[row] = 1; } } break; case rnd_fct: while( elem-- ) { this->value.data.dblptr[elem] = ran1(); this->value.undef[elem] = 0; } break; case gasrnd_fct: while( elem-- ) { this->value.data.dblptr[elem] = gasdev(); this->value.undef[elem] = 0; } break; case poirnd_fct: if( theParams[0]->type==DOUBLE ) { if (theParams[0]->operation == CONST_OP) { while( elem-- ) { this->value.undef[elem] = (pVals[0].data.dbl < 0); if (! this->value.undef[elem]) { this->value.data.lngptr[elem] = poidev(pVals[0].data.dbl); } } } else { while( elem-- ) { this->value.undef[elem] = theParams[0]->value.undef[elem]; if (theParams[0]->value.data.dblptr[elem] < 0) this->value.undef[elem] = 1; if (! this->value.undef[elem]) { this->value.data.lngptr[elem] = poidev(theParams[0]->value.data.dblptr[elem]); } } /* while */ } /* ! CONST_OP */ } else { /* LONG */ if (theParams[0]->operation == CONST_OP) { while( elem-- ) { this->value.undef[elem] = (pVals[0].data.lng < 0); if (! this->value.undef[elem]) { this->value.data.lngptr[elem] = poidev(pVals[0].data.lng); } } } else { while( elem-- ) { this->value.undef[elem] = theParams[0]->value.undef[elem]; if (theParams[0]->value.data.lngptr[elem] < 0) this->value.undef[elem] = 1; if (! this->value.undef[elem]) { this->value.data.lngptr[elem] = poidev(theParams[0]->value.data.lngptr[elem]); } } /* while */ } /* ! CONST_OP */ } /* END LONG */ break; /* Non-Trig single-argument functions */ case sum_fct: elem = row * theParams[0]->value.nelem; if( theParams[0]->type==BOOLEAN ) { while( row-- ) { this->value.data.lngptr[row] = 0; /* Default is UNDEF until a defined value is found */ this->value.undef[row] = 1; nelem = theParams[0]->value.nelem; while( nelem-- ) { elem--; if ( ! theParams[0]->value.undef[elem] ) { this->value.data.lngptr[row] += ( theParams[0]->value.data.logptr[elem] ? 1 : 0 ); this->value.undef[row] = 0; } } } } else if( theParams[0]->type==LONG ) { while( row-- ) { this->value.data.lngptr[row] = 0; /* Default is UNDEF until a defined value is found */ this->value.undef[row] = 1; nelem = theParams[0]->value.nelem; while( nelem-- ) { elem--; if ( ! theParams[0]->value.undef[elem] ) { this->value.data.lngptr[row] += theParams[0]->value.data.lngptr[elem]; this->value.undef[row] = 0; } } } } else if( theParams[0]->type==DOUBLE ){ while( row-- ) { this->value.data.dblptr[row] = 0.0; /* Default is UNDEF until a defined value is found */ this->value.undef[row] = 1; nelem = theParams[0]->value.nelem; while( nelem-- ) { elem--; if ( ! theParams[0]->value.undef[elem] ) { this->value.data.dblptr[row] += theParams[0]->value.data.dblptr[elem]; this->value.undef[row] = 0; } } } } else { /* BITSTR */ nelem = theParams[0]->value.nelem; while( row-- ) { char *sptr1 = theParams[0]->value.data.strptr[row]; this->value.data.lngptr[row] = 0; this->value.undef[row] = 0; while (*sptr1) { if (*sptr1 == '1') this->value.data.lngptr[row] ++; sptr1++; } } } break; case average_fct: elem = row * theParams[0]->value.nelem; if( theParams[0]->type==LONG ) { while( row-- ) { int count = 0; this->value.data.dblptr[row] = 0; nelem = theParams[0]->value.nelem; while( nelem-- ) { elem--; if (theParams[0]->value.undef[elem] == 0) { this->value.data.dblptr[row] += theParams[0]->value.data.lngptr[elem]; count ++; } } if (count == 0) { this->value.undef[row] = 1; } else { this->value.undef[row] = 0; this->value.data.dblptr[row] /= count; } } } else if( theParams[0]->type==DOUBLE ){ while( row-- ) { int count = 0; this->value.data.dblptr[row] = 0; nelem = theParams[0]->value.nelem; while( nelem-- ) { elem--; if (theParams[0]->value.undef[elem] == 0) { this->value.data.dblptr[row] += theParams[0]->value.data.dblptr[elem]; count ++; } } if (count == 0) { this->value.undef[row] = 1; } else { this->value.undef[row] = 0; this->value.data.dblptr[row] /= count; } } } break; case stddev_fct: elem = row * theParams[0]->value.nelem; if( theParams[0]->type==LONG ) { /* Compute the mean value */ while( row-- ) { int count = 0; double sum = 0, sum2 = 0; nelem = theParams[0]->value.nelem; while( nelem-- ) { elem--; if (theParams[0]->value.undef[elem] == 0) { sum += theParams[0]->value.data.lngptr[elem]; count ++; } } if (count > 1) { sum /= count; /* Compute the sum of squared deviations */ nelem = theParams[0]->value.nelem; elem += nelem; /* Reset elem for second pass */ while( nelem-- ) { elem--; if (theParams[0]->value.undef[elem] == 0) { double dx = (theParams[0]->value.data.lngptr[elem] - sum); sum2 += (dx*dx); } } sum2 /= (double)count-1; this->value.undef[row] = 0; this->value.data.dblptr[row] = sqrt(sum2); } else { this->value.undef[row] = 0; /* STDDEV => 0 */ this->value.data.dblptr[row] = 0; } } } else if( theParams[0]->type==DOUBLE ){ /* Compute the mean value */ while( row-- ) { int count = 0; double sum = 0, sum2 = 0; nelem = theParams[0]->value.nelem; while( nelem-- ) { elem--; if (theParams[0]->value.undef[elem] == 0) { sum += theParams[0]->value.data.dblptr[elem]; count ++; } } if (count > 1) { sum /= count; /* Compute the sum of squared deviations */ nelem = theParams[0]->value.nelem; elem += nelem; /* Reset elem for second pass */ while( nelem-- ) { elem--; if (theParams[0]->value.undef[elem] == 0) { double dx = (theParams[0]->value.data.dblptr[elem] - sum); sum2 += (dx*dx); } } sum2 /= (double)count-1; this->value.undef[row] = 0; this->value.data.dblptr[row] = sqrt(sum2); } else { this->value.undef[row] = 0; /* STDDEV => 0 */ this->value.data.dblptr[row] = 0; } } } break; case median_fct: elem = row * theParams[0]->value.nelem; nelem = theParams[0]->value.nelem; if( theParams[0]->type==LONG ) { long *dptr = theParams[0]->value.data.lngptr; char *uptr = theParams[0]->value.undef; long *mptr = (long *) malloc(sizeof(long)*nelem); int irow; /* Allocate temporary storage for this row, since the quickselect function will scramble the contents */ if (mptr == 0) { fferror("Could not allocate temporary memory in median function"); free( this->value.data.ptr ); break; } for (irow=0; irow 0) { this->value.undef[irow] = 0; this->value.data.lngptr[irow] = qselect_median_lng(mptr, nelem1); } else { this->value.undef[irow] = 1; this->value.data.lngptr[irow] = 0; } } free(mptr); } else { double *dptr = theParams[0]->value.data.dblptr; char *uptr = theParams[0]->value.undef; double *mptr = (double *) malloc(sizeof(double)*nelem); int irow; /* Allocate temporary storage for this row, since the quickselect function will scramble the contents */ if (mptr == 0) { fferror("Could not allocate temporary memory in median function"); free( this->value.data.ptr ); break; } for (irow=0; irow 0) { this->value.undef[irow] = 0; this->value.data.dblptr[irow] = qselect_median_dbl(mptr, nelem1); } else { this->value.undef[irow] = 1; this->value.data.dblptr[irow] = 0; } } free(mptr); } break; case abs_fct: if( theParams[0]->type==DOUBLE ) while( elem-- ) { dval = theParams[0]->value.data.dblptr[elem]; this->value.data.dblptr[elem] = (dval>0.0 ? dval : -dval); this->value.undef[elem] = theParams[0]->value.undef[elem]; } else while( elem-- ) { ival = theParams[0]->value.data.lngptr[elem]; this->value.data.lngptr[elem] = (ival> 0 ? ival : -ival); this->value.undef[elem] = theParams[0]->value.undef[elem]; } break; /* Special Null-Handling Functions */ case nonnull_fct: nelem = theParams[0]->value.nelem; if ( theParams[0]->type==STRING ) nelem = 1; elem = row * nelem; while( row-- ) { int nelem1 = nelem; this->value.undef[row] = 0; /* Initialize to 0 (defined) */ this->value.data.lngptr[row] = 0; while( nelem1-- ) { elem --; if ( theParams[0]->value.undef[elem] == 0 ) this->value.data.lngptr[row] ++; } } break; case isnull_fct: if( theParams[0]->type==STRING ) elem = row; while( elem-- ) { this->value.data.logptr[elem] = theParams[0]->value.undef[elem]; this->value.undef[elem] = 0; } break; case defnull_fct: switch( this->type ) { case BOOLEAN: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=2; while( i-- ) if( vector[i]>1 ) { pNull[i] = theParams[i]->value.undef[elem]; pVals[i].data.log = theParams[i]->value.data.logptr[elem]; } else if( vector[i] ) { pNull[i] = theParams[i]->value.undef[row]; pVals[i].data.log = theParams[i]->value.data.logptr[row]; } if( pNull[0] ) { this->value.undef[elem] = pNull[1]; this->value.data.logptr[elem] = pVals[1].data.log; } else { this->value.undef[elem] = 0; this->value.data.logptr[elem] = pVals[0].data.log; } } } break; case LONG: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=2; while( i-- ) if( vector[i]>1 ) { pNull[i] = theParams[i]->value.undef[elem]; pVals[i].data.lng = theParams[i]->value.data.lngptr[elem]; } else if( vector[i] ) { pNull[i] = theParams[i]->value.undef[row]; pVals[i].data.lng = theParams[i]->value.data.lngptr[row]; } if( pNull[0] ) { this->value.undef[elem] = pNull[1]; this->value.data.lngptr[elem] = pVals[1].data.lng; } else { this->value.undef[elem] = 0; this->value.data.lngptr[elem] = pVals[0].data.lng; } } } break; case DOUBLE: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=2; while( i-- ) if( vector[i]>1 ) { pNull[i] = theParams[i]->value.undef[elem]; pVals[i].data.dbl = theParams[i]->value.data.dblptr[elem]; } else if( vector[i] ) { pNull[i] = theParams[i]->value.undef[row]; pVals[i].data.dbl = theParams[i]->value.data.dblptr[row]; } if( pNull[0] ) { this->value.undef[elem] = pNull[1]; this->value.data.dblptr[elem] = pVals[1].data.dbl; } else { this->value.undef[elem] = 0; this->value.data.dblptr[elem] = pVals[0].data.dbl; } } } break; case STRING: while( row-- ) { i=2; while( i-- ) if( vector[i] ) { pNull[i] = theParams[i]->value.undef[row]; strcpy(pVals[i].data.str, theParams[i]->value.data.strptr[row]); } if( pNull[0] ) { this->value.undef[row] = pNull[1]; strcpy(this->value.data.strptr[row],pVals[1].data.str); } else { this->value.undef[elem] = 0; strcpy(this->value.data.strptr[row],pVals[0].data.str); } } } break; /* Math functions with 1 double argument */ case sin_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { this->value.data.dblptr[elem] = sin( theParams[0]->value.data.dblptr[elem] ); } break; case cos_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { this->value.data.dblptr[elem] = cos( theParams[0]->value.data.dblptr[elem] ); } break; case tan_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { this->value.data.dblptr[elem] = tan( theParams[0]->value.data.dblptr[elem] ); } break; case asin_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { dval = theParams[0]->value.data.dblptr[elem]; if( dval<-1.0 || dval>1.0 ) { this->value.data.dblptr[elem] = 0.0; this->value.undef[elem] = 1; } else this->value.data.dblptr[elem] = asin( dval ); } break; case acos_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { dval = theParams[0]->value.data.dblptr[elem]; if( dval<-1.0 || dval>1.0 ) { this->value.data.dblptr[elem] = 0.0; this->value.undef[elem] = 1; } else this->value.data.dblptr[elem] = acos( dval ); } break; case atan_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { dval = theParams[0]->value.data.dblptr[elem]; this->value.data.dblptr[elem] = atan( dval ); } break; case sinh_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { this->value.data.dblptr[elem] = sinh( theParams[0]->value.data.dblptr[elem] ); } break; case cosh_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { this->value.data.dblptr[elem] = cosh( theParams[0]->value.data.dblptr[elem] ); } break; case tanh_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { this->value.data.dblptr[elem] = tanh( theParams[0]->value.data.dblptr[elem] ); } break; case exp_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { dval = theParams[0]->value.data.dblptr[elem]; this->value.data.dblptr[elem] = exp( dval ); } break; case log_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { dval = theParams[0]->value.data.dblptr[elem]; if( dval<=0.0 ) { this->value.data.dblptr[elem] = 0.0; this->value.undef[elem] = 1; } else this->value.data.dblptr[elem] = log( dval ); } break; case log10_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { dval = theParams[0]->value.data.dblptr[elem]; if( dval<=0.0 ) { this->value.data.dblptr[elem] = 0.0; this->value.undef[elem] = 1; } else this->value.data.dblptr[elem] = log10( dval ); } break; case sqrt_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { dval = theParams[0]->value.data.dblptr[elem]; if( dval<0.0 ) { this->value.data.dblptr[elem] = 0.0; this->value.undef[elem] = 1; } else this->value.data.dblptr[elem] = sqrt( dval ); } break; case ceil_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { this->value.data.dblptr[elem] = ceil( theParams[0]->value.data.dblptr[elem] ); } break; case floor_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { this->value.data.dblptr[elem] = floor( theParams[0]->value.data.dblptr[elem] ); } break; case round_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { this->value.data.dblptr[elem] = floor( theParams[0]->value.data.dblptr[elem] + 0.5); } break; /* Two-argument Trig Functions */ case atan2_fct: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=2; while( i-- ) if( vector[i]>1 ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( !(this->value.undef[elem] = (pNull[0] || pNull[1]) ) ) this->value.data.dblptr[elem] = atan2( pVals[0].data.dbl, pVals[1].data.dbl ); } } break; /* Four-argument ANGSEP Function */ case angsep_fct: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=4; while( i-- ) if( vector[i]>1 ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( !(this->value.undef[elem] = (pNull[0] || pNull[1] || pNull[2] || pNull[3]) ) ) this->value.data.dblptr[elem] = angsep_calc(pVals[0].data.dbl, pVals[1].data.dbl, pVals[2].data.dbl, pVals[3].data.dbl); } } break; /* Min/Max functions taking 1 or 2 arguments */ case min1_fct: elem = row * theParams[0]->value.nelem; if( this->type==LONG ) { long minVal=0; while( row-- ) { valInit = 1; this->value.undef[row] = 1; nelem = theParams[0]->value.nelem; while( nelem-- ) { elem--; if ( !theParams[0]->value.undef[elem] ) { if ( valInit ) { valInit = 0; minVal = theParams[0]->value.data.lngptr[elem]; } else { minVal = minvalue( minVal, theParams[0]->value.data.lngptr[elem] ); } this->value.undef[row] = 0; } } this->value.data.lngptr[row] = minVal; } } else if( this->type==DOUBLE ) { double minVal=0.0; while( row-- ) { valInit = 1; this->value.undef[row] = 1; nelem = theParams[0]->value.nelem; while( nelem-- ) { elem--; if ( !theParams[0]->value.undef[elem] ) { if ( valInit ) { valInit = 0; minVal = theParams[0]->value.data.dblptr[elem]; } else { minVal = minvalue( minVal, theParams[0]->value.data.dblptr[elem] ); } this->value.undef[row] = 0; } } this->value.data.dblptr[row] = minVal; } } else if( this->type==BITSTR ) { char minVal; while( row-- ) { char *sptr1 = theParams[0]->value.data.strptr[row]; minVal = '1'; while (*sptr1) { if (*sptr1 == '0') minVal = '0'; sptr1++; } this->value.data.strptr[row][0] = minVal; this->value.data.strptr[row][1] = 0; /* Null terminate */ } } break; case min2_fct: if( this->type==LONG ) { while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=2; while( i-- ) if( vector[i]>1 ) { pVals[i].data.lng = theParams[i]->value.data.lngptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.lng = theParams[i]->value.data.lngptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( pNull[0] && pNull[1] ) { this->value.undef[elem] = 1; this->value.data.lngptr[elem] = 0; } else if (pNull[0]) { this->value.undef[elem] = 0; this->value.data.lngptr[elem] = pVals[1].data.lng; } else if (pNull[1]) { this->value.undef[elem] = 0; this->value.data.lngptr[elem] = pVals[0].data.lng; } else { this->value.undef[elem] = 0; this->value.data.lngptr[elem] = minvalue( pVals[0].data.lng, pVals[1].data.lng ); } } } } else if( this->type==DOUBLE ) { while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=2; while( i-- ) if( vector[i]>1 ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( pNull[0] && pNull[1] ) { this->value.undef[elem] = 1; this->value.data.dblptr[elem] = 0; } else if (pNull[0]) { this->value.undef[elem] = 0; this->value.data.dblptr[elem] = pVals[1].data.dbl; } else if (pNull[1]) { this->value.undef[elem] = 0; this->value.data.dblptr[elem] = pVals[0].data.dbl; } else { this->value.undef[elem] = 0; this->value.data.dblptr[elem] = minvalue( pVals[0].data.dbl, pVals[1].data.dbl ); } } } } break; case max1_fct: elem = row * theParams[0]->value.nelem; if( this->type==LONG ) { long maxVal=0; while( row-- ) { valInit = 1; this->value.undef[row] = 1; nelem = theParams[0]->value.nelem; while( nelem-- ) { elem--; if ( !theParams[0]->value.undef[elem] ) { if ( valInit ) { valInit = 0; maxVal = theParams[0]->value.data.lngptr[elem]; } else { maxVal = maxvalue( maxVal, theParams[0]->value.data.lngptr[elem] ); } this->value.undef[row] = 0; } } this->value.data.lngptr[row] = maxVal; } } else if( this->type==DOUBLE ) { double maxVal=0.0; while( row-- ) { valInit = 1; this->value.undef[row] = 1; nelem = theParams[0]->value.nelem; while( nelem-- ) { elem--; if ( !theParams[0]->value.undef[elem] ) { if ( valInit ) { valInit = 0; maxVal = theParams[0]->value.data.dblptr[elem]; } else { maxVal = maxvalue( maxVal, theParams[0]->value.data.dblptr[elem] ); } this->value.undef[row] = 0; } } this->value.data.dblptr[row] = maxVal; } } else if( this->type==BITSTR ) { char maxVal; while( row-- ) { char *sptr1 = theParams[0]->value.data.strptr[row]; maxVal = '0'; while (*sptr1) { if (*sptr1 == '1') maxVal = '1'; sptr1++; } this->value.data.strptr[row][0] = maxVal; this->value.data.strptr[row][1] = 0; /* Null terminate */ } } break; case max2_fct: if( this->type==LONG ) { while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=2; while( i-- ) if( vector[i]>1 ) { pVals[i].data.lng = theParams[i]->value.data.lngptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.lng = theParams[i]->value.data.lngptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( pNull[0] && pNull[1] ) { this->value.undef[elem] = 1; this->value.data.lngptr[elem] = 0; } else if (pNull[0]) { this->value.undef[elem] = 0; this->value.data.lngptr[elem] = pVals[1].data.lng; } else if (pNull[1]) { this->value.undef[elem] = 0; this->value.data.lngptr[elem] = pVals[0].data.lng; } else { this->value.undef[elem] = 0; this->value.data.lngptr[elem] = maxvalue( pVals[0].data.lng, pVals[1].data.lng ); } } } } else if( this->type==DOUBLE ) { while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=2; while( i-- ) if( vector[i]>1 ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( pNull[0] && pNull[1] ) { this->value.undef[elem] = 1; this->value.data.dblptr[elem] = 0; } else if (pNull[0]) { this->value.undef[elem] = 0; this->value.data.dblptr[elem] = pVals[1].data.dbl; } else if (pNull[1]) { this->value.undef[elem] = 0; this->value.data.dblptr[elem] = pVals[0].data.dbl; } else { this->value.undef[elem] = 0; this->value.data.dblptr[elem] = maxvalue( pVals[0].data.dbl, pVals[1].data.dbl ); } } } } break; /* Boolean SAO region Functions... scalar or vector dbls */ case near_fct: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=3; while( i-- ) if( vector[i]>1 ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( !(this->value.undef[elem] = (pNull[0] || pNull[1] || pNull[2]) ) ) this->value.data.logptr[elem] = bnear( pVals[0].data.dbl, pVals[1].data.dbl, pVals[2].data.dbl ); } } break; case circle_fct: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=5; while( i-- ) if( vector[i]>1 ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( !(this->value.undef[elem] = (pNull[0] || pNull[1] || pNull[2] || pNull[3] || pNull[4]) ) ) this->value.data.logptr[elem] = circle( pVals[0].data.dbl, pVals[1].data.dbl, pVals[2].data.dbl, pVals[3].data.dbl, pVals[4].data.dbl ); } } break; case box_fct: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=7; while( i-- ) if( vector[i]>1 ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( !(this->value.undef[elem] = (pNull[0] || pNull[1] || pNull[2] || pNull[3] || pNull[4] || pNull[5] || pNull[6] ) ) ) this->value.data.logptr[elem] = saobox( pVals[0].data.dbl, pVals[1].data.dbl, pVals[2].data.dbl, pVals[3].data.dbl, pVals[4].data.dbl, pVals[5].data.dbl, pVals[6].data.dbl ); } } break; case elps_fct: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=7; while( i-- ) if( vector[i]>1 ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( !(this->value.undef[elem] = (pNull[0] || pNull[1] || pNull[2] || pNull[3] || pNull[4] || pNull[5] || pNull[6] ) ) ) this->value.data.logptr[elem] = ellipse( pVals[0].data.dbl, pVals[1].data.dbl, pVals[2].data.dbl, pVals[3].data.dbl, pVals[4].data.dbl, pVals[5].data.dbl, pVals[6].data.dbl ); } } break; /* C Conditional expression: bool ? expr : expr */ case ifthenelse_fct: switch( this->type ) { case BOOLEAN: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; if( vector[2]>1 ) { pVals[2].data.log = theParams[2]->value.data.logptr[elem]; pNull[2] = theParams[2]->value.undef[elem]; } else if( vector[2] ) { pVals[2].data.log = theParams[2]->value.data.logptr[row]; pNull[2] = theParams[2]->value.undef[row]; } i=2; while( i-- ) if( vector[i]>1 ) { pVals[i].data.log = theParams[i]->value.data.logptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.log = theParams[i]->value.data.logptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( !(this->value.undef[elem] = pNull[2]) ) { if( pVals[2].data.log ) { this->value.data.logptr[elem] = pVals[0].data.log; this->value.undef[elem] = pNull[0]; } else { this->value.data.logptr[elem] = pVals[1].data.log; this->value.undef[elem] = pNull[1]; } } } } break; case LONG: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; if( vector[2]>1 ) { pVals[2].data.log = theParams[2]->value.data.logptr[elem]; pNull[2] = theParams[2]->value.undef[elem]; } else if( vector[2] ) { pVals[2].data.log = theParams[2]->value.data.logptr[row]; pNull[2] = theParams[2]->value.undef[row]; } i=2; while( i-- ) if( vector[i]>1 ) { pVals[i].data.lng = theParams[i]->value.data.lngptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.lng = theParams[i]->value.data.lngptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( !(this->value.undef[elem] = pNull[2]) ) { if( pVals[2].data.log ) { this->value.data.lngptr[elem] = pVals[0].data.lng; this->value.undef[elem] = pNull[0]; } else { this->value.data.lngptr[elem] = pVals[1].data.lng; this->value.undef[elem] = pNull[1]; } } } } break; case DOUBLE: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; if( vector[2]>1 ) { pVals[2].data.log = theParams[2]->value.data.logptr[elem]; pNull[2] = theParams[2]->value.undef[elem]; } else if( vector[2] ) { pVals[2].data.log = theParams[2]->value.data.logptr[row]; pNull[2] = theParams[2]->value.undef[row]; } i=2; while( i-- ) if( vector[i]>1 ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( !(this->value.undef[elem] = pNull[2]) ) { if( pVals[2].data.log ) { this->value.data.dblptr[elem] = pVals[0].data.dbl; this->value.undef[elem] = pNull[0]; } else { this->value.data.dblptr[elem] = pVals[1].data.dbl; this->value.undef[elem] = pNull[1]; } } } } break; case STRING: while( row-- ) { if( vector[2] ) { pVals[2].data.log = theParams[2]->value.data.logptr[row]; pNull[2] = theParams[2]->value.undef[row]; } i=2; while( i-- ) if( vector[i] ) { strcpy( pVals[i].data.str, theParams[i]->value.data.strptr[row] ); pNull[i] = theParams[i]->value.undef[row]; } if( !(this->value.undef[row] = pNull[2]) ) { if( pVals[2].data.log ) { strcpy( this->value.data.strptr[row], pVals[0].data.str ); this->value.undef[row] = pNull[0]; } else { strcpy( this->value.data.strptr[row], pVals[1].data.str ); this->value.undef[row] = pNull[1]; } } else { this->value.data.strptr[row][0] = '\0'; } } break; } break; /* String functions */ case strmid_fct: { int strconst = theParams[0]->operation == CONST_OP; int posconst = theParams[1]->operation == CONST_OP; int lenconst = theParams[2]->operation == CONST_OP; int dest_len = this->value.nelem; int src_len = theParams[0]->value.nelem; while (row--) { int pos; int len; char *str; int undef = 0; if (posconst) { pos = theParams[1]->value.data.lng; } else { pos = theParams[1]->value.data.lngptr[row]; if (theParams[1]->value.undef[row]) undef = 1; } if (strconst) { str = theParams[0]->value.data.str; if (src_len == 0) src_len = strlen(str); } else { str = theParams[0]->value.data.strptr[row]; if (theParams[0]->value.undef[row]) undef = 1; } if (lenconst) { len = dest_len; } else { len = theParams[2]->value.data.lngptr[row]; if (theParams[2]->value.undef[row]) undef = 1; } this->value.data.strptr[row][0] = '\0'; if (pos == 0) undef = 1; if (! undef ) { if (cstrmid(this->value.data.strptr[row], len, str, src_len, pos) < 0) break; } this->value.undef[row] = undef; } } break; /* String functions */ case strpos_fct: { int const1 = theParams[0]->operation == CONST_OP; int const2 = theParams[1]->operation == CONST_OP; while (row--) { char *str1, *str2; int undef = 0; if (const1) { str1 = theParams[0]->value.data.str; } else { str1 = theParams[0]->value.data.strptr[row]; if (theParams[0]->value.undef[row]) undef = 1; } if (const2) { str2 = theParams[1]->value.data.str; } else { str2 = theParams[1]->value.data.strptr[row]; if (theParams[1]->value.undef[row]) undef = 1; } this->value.data.lngptr[row] = 0; if (! undef ) { char *res = strstr(str1, str2); if (res == NULL) { undef = 1; this->value.data.lngptr[row] = 0; } else { this->value.data.lngptr[row] = (res - str1) + 1; } } this->value.undef[row] = undef; } } break; } /* End switch(this->operation) */ } /* End if (!gParse.status) */ } /* End non-constant operations */ i = this->nSubNodes; while( i-- ) { if( theParams[i]->operation>0 ) { /* Currently only numeric params allowed */ free( theParams[i]->value.data.ptr ); } } } static void Do_Deref( Node *this ) { Node *theVar, *theDims[MAXDIMS]; int isConst[MAXDIMS], allConst; long dimVals[MAXDIMS]; int i, nDims; long row, elem, dsize; theVar = gParse.Nodes + this->SubNodes[0]; i = nDims = this->nSubNodes-1; allConst = 1; while( i-- ) { theDims[i] = gParse.Nodes + this->SubNodes[i+1]; isConst[i] = ( theDims[i]->operation==CONST_OP ); if( isConst[i] ) dimVals[i] = theDims[i]->value.data.lng; else allConst = 0; } if( this->type==DOUBLE ) { dsize = sizeof( double ); } else if( this->type==LONG ) { dsize = sizeof( long ); } else if( this->type==BOOLEAN ) { dsize = sizeof( char ); } else dsize = 0; Allocate_Ptrs( this ); if( !gParse.status ) { if( allConst && theVar->value.naxis==nDims ) { /* Dereference completely using constant indices */ elem = 0; i = nDims; while( i-- ) { if( dimVals[i]<1 || dimVals[i]>theVar->value.naxes[i] ) break; elem = theVar->value.naxes[i]*elem + dimVals[i]-1; } if( i<0 ) { for( row=0; rowtype==STRING ) this->value.undef[row] = theVar->value.undef[row]; else if( this->type==BITSTR ) this->value.undef; /* Dummy - BITSTRs do not have undefs */ else this->value.undef[row] = theVar->value.undef[elem]; if( this->type==DOUBLE ) this->value.data.dblptr[row] = theVar->value.data.dblptr[elem]; else if( this->type==LONG ) this->value.data.lngptr[row] = theVar->value.data.lngptr[elem]; else if( this->type==BOOLEAN ) this->value.data.logptr[row] = theVar->value.data.logptr[elem]; else { /* XXX Note, the below expression uses knowledge of the layout of the string format, namely (nelem+1) characters per string, followed by (nelem+1) "undef" values. */ this->value.data.strptr[row][0] = theVar->value.data.strptr[0][elem+row]; this->value.data.strptr[row][1] = 0; /* Null terminate */ } elem += theVar->value.nelem; } } else { fferror("Index out of range"); free( this->value.data.ptr ); } } else if( allConst && nDims==1 ) { /* Reduce dimensions by 1, using a constant index */ if( dimVals[0] < 1 || dimVals[0] > theVar->value.naxes[ theVar->value.naxis-1 ] ) { fferror("Index out of range"); free( this->value.data.ptr ); } else if ( this->type == BITSTR || this->type == STRING ) { elem = this->value.nelem * (dimVals[0]-1); for( row=0; rowvalue.undef) this->value.undef[row] = theVar->value.undef[row]; memcpy( (char*)this->value.data.strptr[0] + row*sizeof(char)*(this->value.nelem+1), (char*)theVar->value.data.strptr[0] + elem*sizeof(char), this->value.nelem * sizeof(char) ); /* Null terminate */ this->value.data.strptr[row][this->value.nelem] = 0; elem += theVar->value.nelem+1; } } else { elem = this->value.nelem * (dimVals[0]-1); for( row=0; rowvalue.undef + row*this->value.nelem, theVar->value.undef + elem, this->value.nelem * sizeof(char) ); memcpy( (char*)this->value.data.ptr + row*dsize*this->value.nelem, (char*)theVar->value.data.ptr + elem*dsize, this->value.nelem * dsize ); elem += theVar->value.nelem; } } } else if( theVar->value.naxis==nDims ) { /* Dereference completely using an expression for the indices */ for( row=0; rowvalue.undef[row] ) { fferror("Null encountered as vector index"); free( this->value.data.ptr ); break; } else dimVals[i] = theDims[i]->value.data.lngptr[row]; } } if( gParse.status ) break; elem = 0; i = nDims; while( i-- ) { if( dimVals[i]<1 || dimVals[i]>theVar->value.naxes[i] ) break; elem = theVar->value.naxes[i]*elem + dimVals[i]-1; } if( i<0 ) { elem += row*theVar->value.nelem; if( this->type==STRING ) this->value.undef[row] = theVar->value.undef[row]; else if( this->type==BITSTR ) this->value.undef; /* Dummy - BITSTRs do not have undefs */ else this->value.undef[row] = theVar->value.undef[elem]; if( this->type==DOUBLE ) this->value.data.dblptr[row] = theVar->value.data.dblptr[elem]; else if( this->type==LONG ) this->value.data.lngptr[row] = theVar->value.data.lngptr[elem]; else if( this->type==BOOLEAN ) this->value.data.logptr[row] = theVar->value.data.logptr[elem]; else { /* XXX Note, the below expression uses knowledge of the layout of the string format, namely (nelem+1) characters per string, followed by (nelem+1) "undef" values. */ this->value.data.strptr[row][0] = theVar->value.data.strptr[0][elem+row]; this->value.data.strptr[row][1] = 0; /* Null terminate */ } } else { fferror("Index out of range"); free( this->value.data.ptr ); } } } else { /* Reduce dimensions by 1, using a nonconstant expression */ for( row=0; rowvalue.undef[row] ) { fferror("Null encountered as vector index"); free( this->value.data.ptr ); break; } else dimVals[0] = theDims[0]->value.data.lngptr[row]; if( dimVals[0] < 1 || dimVals[0] > theVar->value.naxes[ theVar->value.naxis-1 ] ) { fferror("Index out of range"); free( this->value.data.ptr ); } else if ( this->type == BITSTR || this->type == STRING ) { elem = this->value.nelem * (dimVals[0]-1); elem += row*(theVar->value.nelem+1); if (this->value.undef) this->value.undef[row] = theVar->value.undef[row]; memcpy( (char*)this->value.data.strptr[0] + row*sizeof(char)*(this->value.nelem+1), (char*)theVar->value.data.strptr[0] + elem*sizeof(char), this->value.nelem * sizeof(char) ); /* Null terminate */ this->value.data.strptr[row][this->value.nelem] = 0; } else { elem = this->value.nelem * (dimVals[0]-1); elem += row*theVar->value.nelem; memcpy( this->value.undef + row*this->value.nelem, theVar->value.undef + elem, this->value.nelem * sizeof(char) ); memcpy( (char*)this->value.data.ptr + row*dsize*this->value.nelem, (char*)theVar->value.data.ptr + elem*dsize, this->value.nelem * dsize ); } } } } if( theVar->operation>0 ) { if (theVar->type == STRING || theVar->type == BITSTR) free(theVar->value.data.strptr[0] ); else free( theVar->value.data.ptr ); } for( i=0; ioperation>0 ) { free( theDims[i]->value.data.ptr ); } } static void Do_GTI( Node *this ) { Node *theExpr, *theTimes; double *start, *stop, *times; long elem, nGTI, gti; int ordered; theTimes = gParse.Nodes + this->SubNodes[0]; theExpr = gParse.Nodes + this->SubNodes[1]; nGTI = theTimes->value.nelem; start = theTimes->value.data.dblptr; stop = theTimes->value.data.dblptr + nGTI; ordered = theTimes->type; if( theExpr->operation==CONST_OP ) { this->value.data.log = (Search_GTI( theExpr->value.data.dbl, nGTI, start, stop, ordered )>=0); this->operation = CONST_OP; } else { Allocate_Ptrs( this ); times = theExpr->value.data.dblptr; if( !gParse.status ) { elem = gParse.nRows * this->value.nelem; if( nGTI ) { gti = -1; while( elem-- ) { if( (this->value.undef[elem] = theExpr->value.undef[elem]) ) continue; /* Before searching entire GTI, check the GTI found last time */ if( gti<0 || times[elem]stop[gti] ) { gti = Search_GTI( times[elem], nGTI, start, stop, ordered ); } this->value.data.logptr[elem] = ( gti>=0 ); } } else while( elem-- ) { this->value.data.logptr[elem] = 0; this->value.undef[elem] = 0; } } } if( theExpr->operation>0 ) free( theExpr->value.data.ptr ); } static long Search_GTI( double evtTime, long nGTI, double *start, double *stop, int ordered ) { long gti, step; if( ordered && nGTI>15 ) { /* If time-ordered and lots of GTIs, */ /* use "FAST" Binary search algorithm */ if( evtTime>=start[0] && evtTime<=stop[nGTI-1] ) { gti = step = (nGTI >> 1); while(1) { if( step>1L ) step >>= 1; if( evtTime>stop[gti] ) { if( evtTime>=start[gti+1] ) gti += step; else { gti = -1L; break; } } else if( evtTime=start[gti] && evtTime<=stop[gti] ) break; } return( gti ); } static void Do_REG( Node *this ) { Node *theRegion, *theX, *theY; double Xval=0.0, Yval=0.0; char Xnull=0, Ynull=0; int Xvector, Yvector; long nelem, elem, rows; theRegion = gParse.Nodes + this->SubNodes[0]; theX = gParse.Nodes + this->SubNodes[1]; theY = gParse.Nodes + this->SubNodes[2]; Xvector = ( theX->operation!=CONST_OP ); if( Xvector ) Xvector = theX->value.nelem; else { Xval = theX->value.data.dbl; } Yvector = ( theY->operation!=CONST_OP ); if( Yvector ) Yvector = theY->value.nelem; else { Yval = theY->value.data.dbl; } if( !Xvector && !Yvector ) { this->value.data.log = ( fits_in_region( Xval, Yval, (SAORegion *)theRegion->value.data.ptr ) != 0 ); this->operation = CONST_OP; } else { Allocate_Ptrs( this ); if( !gParse.status ) { rows = gParse.nRows; nelem = this->value.nelem; elem = rows*nelem; while( rows-- ) { while( nelem-- ) { elem--; if( Xvector>1 ) { Xval = theX->value.data.dblptr[elem]; Xnull = theX->value.undef[elem]; } else if( Xvector ) { Xval = theX->value.data.dblptr[rows]; Xnull = theX->value.undef[rows]; } if( Yvector>1 ) { Yval = theY->value.data.dblptr[elem]; Ynull = theY->value.undef[elem]; } else if( Yvector ) { Yval = theY->value.data.dblptr[rows]; Ynull = theY->value.undef[rows]; } this->value.undef[elem] = ( Xnull || Ynull ); if( this->value.undef[elem] ) continue; this->value.data.logptr[elem] = ( fits_in_region( Xval, Yval, (SAORegion *)theRegion->value.data.ptr ) != 0 ); } nelem = this->value.nelem; } } } if( theX->operation>0 ) free( theX->value.data.ptr ); if( theY->operation>0 ) free( theY->value.data.ptr ); } static void Do_Vector( Node *this ) { Node *that; long row, elem, idx, jdx, offset=0; int node; Allocate_Ptrs( this ); if( !gParse.status ) { for( node=0; nodenSubNodes; node++ ) { that = gParse.Nodes + this->SubNodes[node]; if( that->operation == CONST_OP ) { idx = gParse.nRows*this->value.nelem + offset; while( (idx-=this->value.nelem)>=0 ) { this->value.undef[idx] = 0; switch( this->type ) { case BOOLEAN: this->value.data.logptr[idx] = that->value.data.log; break; case LONG: this->value.data.lngptr[idx] = that->value.data.lng; break; case DOUBLE: this->value.data.dblptr[idx] = that->value.data.dbl; break; } } } else { row = gParse.nRows; idx = row * that->value.nelem; while( row-- ) { elem = that->value.nelem; jdx = row*this->value.nelem + offset; while( elem-- ) { this->value.undef[jdx+elem] = that->value.undef[--idx]; switch( this->type ) { case BOOLEAN: this->value.data.logptr[jdx+elem] = that->value.data.logptr[idx]; break; case LONG: this->value.data.lngptr[jdx+elem] = that->value.data.lngptr[idx]; break; case DOUBLE: this->value.data.dblptr[jdx+elem] = that->value.data.dblptr[idx]; break; } } } } offset += that->value.nelem; } } for( node=0; node < this->nSubNodes; node++ ) if( OPER(this->SubNodes[node])>0 ) free( gParse.Nodes[this->SubNodes[node]].value.data.ptr ); } /*****************************************************************************/ /* Utility routines which perform the calculations on bits and SAO regions */ /*****************************************************************************/ static char bitlgte(char *bits1, int oper, char *bits2) { int val1, val2, nextbit; char result; int i, l1, l2, length, ldiff; char stream[256]; char chr1, chr2; l1 = strlen(bits1); l2 = strlen(bits2); if (l1 < l2) { length = l2; ldiff = l2 - l1; i=0; while( ldiff-- ) stream[i++] = '0'; while( l1-- ) stream[i++] = *(bits1++); stream[i] = '\0'; bits1 = stream; } else if (l2 < l1) { length = l1; ldiff = l1 - l2; i=0; while( ldiff-- ) stream[i++] = '0'; while( l2-- ) stream[i++] = *(bits2++); stream[i] = '\0'; bits2 = stream; } else length = l1; val1 = val2 = 0; nextbit = 1; while( length-- ) { chr1 = bits1[length]; chr2 = bits2[length]; if ((chr1 != 'x')&&(chr1 != 'X')&&(chr2 != 'x')&&(chr2 != 'X')) { if (chr1 == '1') val1 += nextbit; if (chr2 == '1') val2 += nextbit; nextbit *= 2; } } result = 0; switch (oper) { case LT: if (val1 < val2) result = 1; break; case LTE: if (val1 <= val2) result = 1; break; case GT: if (val1 > val2) result = 1; break; case GTE: if (val1 >= val2) result = 1; break; } return (result); } static void bitand(char *result,char *bitstrm1,char *bitstrm2) { int i, l1, l2, ldiff; char stream[256]; char chr1, chr2; l1 = strlen(bitstrm1); l2 = strlen(bitstrm2); if (l1 < l2) { ldiff = l2 - l1; i=0; while( ldiff-- ) stream[i++] = '0'; while( l1-- ) stream[i++] = *(bitstrm1++); stream[i] = '\0'; bitstrm1 = stream; } else if (l2 < l1) { ldiff = l1 - l2; i=0; while( ldiff-- ) stream[i++] = '0'; while( l2-- ) stream[i++] = *(bitstrm2++); stream[i] = '\0'; bitstrm2 = stream; } while ( (chr1 = *(bitstrm1++)) ) { chr2 = *(bitstrm2++); if ((chr1 == 'x') || (chr2 == 'x')) *result = 'x'; else if ((chr1 == '1') && (chr2 == '1')) *result = '1'; else *result = '0'; result++; } *result = '\0'; } static void bitor(char *result,char *bitstrm1,char *bitstrm2) { int i, l1, l2, ldiff; char stream[256]; char chr1, chr2; l1 = strlen(bitstrm1); l2 = strlen(bitstrm2); if (l1 < l2) { ldiff = l2 - l1; i=0; while( ldiff-- ) stream[i++] = '0'; while( l1-- ) stream[i++] = *(bitstrm1++); stream[i] = '\0'; bitstrm1 = stream; } else if (l2 < l1) { ldiff = l1 - l2; i=0; while( ldiff-- ) stream[i++] = '0'; while( l2-- ) stream[i++] = *(bitstrm2++); stream[i] = '\0'; bitstrm2 = stream; } while ( (chr1 = *(bitstrm1++)) ) { chr2 = *(bitstrm2++); if ((chr1 == '1') || (chr2 == '1')) *result = '1'; else if ((chr1 == '0') || (chr2 == '0')) *result = '0'; else *result = 'x'; result++; } *result = '\0'; } static void bitnot(char *result,char *bits) { int length; char chr; length = strlen(bits); while( length-- ) { chr = *(bits++); *(result++) = ( chr=='1' ? '0' : ( chr=='0' ? '1' : chr ) ); } *result = '\0'; } static char bitcmp(char *bitstrm1, char *bitstrm2) { int i, l1, l2, ldiff; char stream[256]; char chr1, chr2; l1 = strlen(bitstrm1); l2 = strlen(bitstrm2); if (l1 < l2) { ldiff = l2 - l1; i=0; while( ldiff-- ) stream[i++] = '0'; while( l1-- ) stream[i++] = *(bitstrm1++); stream[i] = '\0'; bitstrm1 = stream; } else if (l2 < l1) { ldiff = l1 - l2; i=0; while( ldiff-- ) stream[i++] = '0'; while( l2-- ) stream[i++] = *(bitstrm2++); stream[i] = '\0'; bitstrm2 = stream; } while( (chr1 = *(bitstrm1++)) ) { chr2 = *(bitstrm2++); if ( ((chr1 == '0') && (chr2 == '1')) || ((chr1 == '1') && (chr2 == '0')) ) return( 0 ); } return( 1 ); } static char bnear(double x, double y, double tolerance) { if (fabs(x - y) < tolerance) return ( 1 ); else return ( 0 ); } static char saobox(double xcen, double ycen, double xwid, double ywid, double rot, double xcol, double ycol) { double x,y,xprime,yprime,xmin,xmax,ymin,ymax,theta; theta = (rot / 180.0) * myPI; xprime = xcol - xcen; yprime = ycol - ycen; x = xprime * cos(theta) + yprime * sin(theta); y = -xprime * sin(theta) + yprime * cos(theta); xmin = - 0.5 * xwid; xmax = 0.5 * xwid; ymin = - 0.5 * ywid; ymax = 0.5 * ywid; if ((x >= xmin) && (x <= xmax) && (y >= ymin) && (y <= ymax)) return ( 1 ); else return ( 0 ); } static char circle(double xcen, double ycen, double rad, double xcol, double ycol) { double r2,dx,dy,dlen; dx = xcol - xcen; dy = ycol - ycen; dx *= dx; dy *= dy; dlen = dx + dy; r2 = rad * rad; if (dlen <= r2) return ( 1 ); else return ( 0 ); } static char ellipse(double xcen, double ycen, double xrad, double yrad, double rot, double xcol, double ycol) { double x,y,xprime,yprime,dx,dy,dlen,theta; theta = (rot / 180.0) * myPI; xprime = xcol - xcen; yprime = ycol - ycen; x = xprime * cos(theta) + yprime * sin(theta); y = -xprime * sin(theta) + yprime * cos(theta); dx = x / xrad; dy = y / yrad; dx *= dx; dy *= dy; dlen = dx + dy; if (dlen <= 1.0) return ( 1 ); else return ( 0 ); } /* * Extract substring */ int cstrmid(char *dest_str, int dest_len, char *src_str, int src_len, int pos) { /* char fill_char = ' '; */ char fill_char = '\0'; if (src_len == 0) { src_len = strlen(src_str); } /* .. if constant */ /* Fill destination with blanks */ if (pos < 0) { fferror("STRMID(S,P,N) P must be 0 or greater"); return -1; } if (pos > src_len || pos == 0) { /* pos==0: blank string requested */ memset(dest_str, fill_char, dest_len); } else if (pos+dest_len > src_len) { /* Copy a subset */ int nsub = src_len-pos+1; int npad = dest_len - nsub; memcpy(dest_str, src_str+pos-1, nsub); /* Fill remaining string with blanks */ memset(dest_str+nsub, fill_char, npad); } else { /* Full string copy */ memcpy(dest_str, src_str+pos-1, dest_len); } dest_str[dest_len] = '\0'; /* Null-terminate */ return 0; } static void fferror(char *s) { char msg[80]; if( !gParse.status ) gParse.status = PARSE_SYNTAX_ERR; strncpy(msg, s, 80); msg[79] = '\0'; ffpmsg(msg); } healpy-1.8.1/cfitsio/iter_b.f0000654000175000017530000001305712272000775016476 0ustar zoncaplanck00000000000000 program f77iterate_b C external work function is passed to the iterator external str_iter integer ncols parameter (ncols=2) integer units(ncols), colnum(ncols), datatype(ncols) integer iotype(ncols), offset, rows_per_loop, status character*70 colname(ncols) integer iunit, blocksize character*80 fname C include f77.inc ------------------------------------- C Codes for FITS extension types integer IMAGE_HDU, ASCII_TBL, BINARY_TBL parameter ( & IMAGE_HDU = 0, & ASCII_TBL = 1, & BINARY_TBL = 2 ) C Codes for FITS table data types integer TBIT,TBYTE,TLOGICAL,TSTRING,TSHORT,TINT integer TFLOAT,TDOUBLE,TCOMPLEX,TDBLCOMPLEX parameter ( & TBIT = 1, & TBYTE = 11, & TLOGICAL = 14, & TSTRING = 16, & TSHORT = 21, & TINT = 31, & TFLOAT = 42, & TDOUBLE = 82, & TCOMPLEX = 83, & TDBLCOMPLEX = 163 ) C Codes for iterator column types integer InputCol, InputOutputCol, OutputCol parameter ( & InputCol = 0, & InputOutputCol = 1, & OutputCol = 2 ) C End of f77.inc ------------------------------------- status = 0 fname = 'iter_b.fit' iunit = 15 C both columns are in the same FITS file units(1) = iunit units(2) = iunit C open the file and move to the correct extension call ftopen(iunit,fname,1,blocksize,status) call ftmnhd(iunit, BINARY_TBL, 'iter_test', 0, status) C define the desired columns by name colname(1) = 'Avalue' colname(2) = 'Lvalue' C leave column numbers undefined colnum(1) = 0 colnum(2) = 0 C define the desired datatype for each column: TSTRING & TLOGICAL datatype(1) = TSTRING datatype(2) = TLOGICAL C define whether columns are input, input/output, or output only C Both in/out iotype(1) = InputOutputCol iotype(2) = InputOutputCol C use default optimum number of rows and process all the rows rows_per_loop = 0 offset = 0 C apply the function to each row of the table print *,'Calling iterator function...', status call ftiter( ncols, units, colnum, colname, datatype, iotype, & offset, rows_per_loop, str_iter, 0, status ) call ftclos(iunit, status) C print out error messages if problem if (status.ne.0) call ftrprt('STDERR', status) stop end C-------------------------------------------------------------------------- C C Sample iterator function. C C-------------------------------------------------------------------------- subroutine str_iter(totalrows, offset, firstrow, nrows, ncols, & units, colnum, datatype, iotype, repeat, status, & userData, stringCol, logicalCol ) integer totalrows,offset,firstrow,nrows,ncols,status integer units(*),colnum(*),datatype(*),iotype(*),repeat(*) integer userData character*(*) stringCol(*) logical logicalCol(*) integer ii C include f77.inc ------------------------------------- C Codes for FITS extension types integer IMAGE_HDU, ASCII_TBL, BINARY_TBL parameter ( & IMAGE_HDU = 0, & ASCII_TBL = 1, & BINARY_TBL = 2 ) C Codes for FITS table data types integer TBIT,TBYTE,TLOGICAL,TSTRING,TSHORT,TINT integer TFLOAT,TDOUBLE,TCOMPLEX,TDBLCOMPLEX parameter ( & TBIT = 1, & TBYTE = 11, & TLOGICAL = 14, & TSTRING = 16, & TSHORT = 21, & TINT = 31, & TFLOAT = 42, & TDOUBLE = 82, & TCOMPLEX = 83, & TDBLCOMPLEX = 163 ) C Codes for iterator column types integer InputCol, InputOutputCol, OutputCol parameter ( & InputCol = 0, & InputOutputCol = 1, & OutputCol = 2 ) C End of f77.inc ------------------------------------- if (status .ne. 0) return C -------------------------------------------------------- C Initialization procedures: execute on the first call C -------------------------------------------------------- if (firstrow .eq. 1) then if (ncols .ne. 2) then status = -1 return endif if (datatype(1).ne.TSTRING .or. datatype(2).ne.TLOGICAL) then status = -2 return endif print *,'Total rows, No. rows = ',totalrows, nrows endif C ------------------------------------------- C Main loop: process all the rows of data C ------------------------------------------- C NOTE: 1st element of array is the null pixel value! C Loop over elements 2 to nrows+1, not 1 to nrows. do 10 ii=2,nrows+1 print *, stringCol(ii), logicalCol(ii) if( logicalCol(ii) ) then logicalCol(ii) = .false. stringCol(ii) = 'changed to false' else logicalCol(ii) = .true. stringCol(ii) = 'changed to true' endif 10 continue C ------------------------------------------------------- C Clean up procedures: after processing all the rows C ------------------------------------------------------- if (firstrow + nrows - 1 .eq. totalrows) then C no action required in this case endif return end healpy-1.8.1/cfitsio/group.h0000654000175000017530000000360612272000775016367 0ustar zoncaplanck00000000000000#define MAX_HDU_TRACKER 1000 typedef struct _HDUtracker HDUtracker; struct _HDUtracker { int nHDU; char *filename[MAX_HDU_TRACKER]; int position[MAX_HDU_TRACKER]; char *newFilename[MAX_HDU_TRACKER]; int newPosition[MAX_HDU_TRACKER]; }; /* functions used internally in the grouping convention module */ int ffgtdc(int grouptype, int xtensioncol, int extnamecol, int extvercol, int positioncol, int locationcol, int uricol, char *ttype[], char *tform[], int *ncols, int *status); int ffgtgc(fitsfile *gfptr, int *xtensionCol, int *extnameCol, int *extverCol, int *positionCol, int *locationCol, int *uriCol, int *grptype, int *status); int ffgmul(fitsfile *mfptr, int rmopt, int *status); int ffgmf(fitsfile *gfptr, char *xtension, char *extname, int extver, int position, char *location, long *member, int *status); int ffgtrmr(fitsfile *gfptr, HDUtracker *HDU, int *status); int ffgtcpr(fitsfile *infptr, fitsfile *outfptr, int cpopt, HDUtracker *HDU, int *status); int fftsad(fitsfile *mfptr, HDUtracker *HDU, int *newPosition, char *newFileName); int fftsud(fitsfile *mfptr, HDUtracker *HDU, int newPosition, char *newFileName); void prepare_keyvalue(char *keyvalue); int fits_path2url(char *inpath, char *outpath, int *status); int fits_url2path(char *inpath, char *outpath, int *status); int fits_get_cwd(char *cwd, int *status); int fits_get_url(fitsfile *fptr, char *realURL, char *startURL, char *realAccess, char *startAccess, int *iostate, int *status); int fits_clean_url(char *inURL, char *outURL, int *status); int fits_relurl2url(char *refURL, char *relURL, char *absURL, int *status); int fits_url2relurl(char *refURL, char *absURL, char *relURL, int *status); int fits_encode_url(char *inpath, char *outpath, int *status); int fits_unencode_url(char *inpath, char *outpath, int *status); int fits_is_url_absolute(char *url); healpy-1.8.1/cfitsio/fpack.c0000654000175000017530000003451012272000775016310 0ustar zoncaplanck00000000000000/* FPACK * R. Seaman, NOAO, with a few enhancements by W. Pence, HEASARC * * Calls fits_img_compress in the CFITSIO library by W. Pence, HEASARC */ #include /* #include */ #include "fitsio.h" #include "fpack.h" /* ================================================================== */ int main(int argc, char *argv[]) { fpstate fpvar; if (argc <= 1) { fp_usage (); fp_hint (); exit (-1); } fp_init (&fpvar); fp_get_param (argc, argv, &fpvar); if (fpvar.listonly) { fp_list (argc, argv, fpvar); } else { fp_preflight (argc, argv, FPACK, &fpvar); fp_loop (argc, argv, FPACK, fpvar); } exit (0); } /* ================================================================== */ int fp_get_param (int argc, char *argv[], fpstate *fpptr) { int gottype=0, gottile=0, wholetile=0, iarg, len, ndim, ii, doffset; char tmp[SZ_STR], tile[SZ_STR]; if (fpptr->initialized != FP_INIT_MAGIC) { fp_msg ("Error: internal initialization error\n"); exit (-1); } tile[0] = 0; /* flags must come first and be separately specified */ for (iarg = 1; iarg < argc; iarg++) { if ((argv[iarg][0] == '-' && strlen (argv[iarg]) == 2) || !strncmp(argv[iarg], "-q", 2) || !strncmp(argv[iarg], "-qz", 3) || !strncmp(argv[iarg], "-g1", 3) || !strncmp(argv[iarg], "-g2", 3) || !strncmp(argv[iarg], "-i2f", 4) || !strncmp(argv[iarg], "-n3ratio", 8) || !strncmp(argv[iarg], "-n3min", 6) || !strncmp(argv[iarg], "-tableonly", 10) || !strncmp(argv[iarg], "-table", 6) ) { /* Rice is the default, so -r is superfluous */ if ( argv[iarg][1] == 'r') { fpptr->comptype = RICE_1; if (gottype) { fp_msg ("Error: multiple compression flags\n"); fp_usage (); exit (-1); } else gottype++; } else if (argv[iarg][1] == 'p') { fpptr->comptype = PLIO_1; if (gottype) { fp_msg ("Error: multiple compression flags\n"); fp_usage (); exit (-1); } else gottype++; } else if (argv[iarg][1] == 'g') { /* test for modifiers following the 'g' */ if (argv[iarg][2] == '2') fpptr->comptype = GZIP_2; else fpptr->comptype = GZIP_1; if (gottype) { fp_msg ("Error: multiple compression flags\n"); fp_usage (); exit (-1); } else gottype++; /* } else if (argv[iarg][1] == 'b') { fpptr->comptype = BZIP2_1; if (gottype) { fp_msg ("Error: multiple compression flags\n"); fp_usage (); exit (-1); } else gottype++; */ } else if (argv[iarg][1] == 'h') { fpptr->comptype = HCOMPRESS_1; if (gottype) { fp_msg ("Error: multiple compression flags\n"); fp_usage (); exit (-1); } else gottype++; } else if (argv[iarg][1] == 'd') { fpptr->comptype = NOCOMPRESS; if (gottype) { fp_msg ("Error: multiple compression flags\n"); fp_usage (); exit (-1); } else gottype++; } else if (!strcmp(argv[iarg], "-i2f")) { /* this means convert integer images to float, and then */ /* quantize and compress the float image. This lossy */ /* compression method may give higher compression than the */ /* lossless compression method that is usually applied to */ /* integer images. */ fpptr->int_to_float = 1; } else if (!strcmp(argv[iarg], "-n3ratio")) { /* this is the minimum ratio between the MAD noise sigma */ /* and the q parameter value in the case where the integer */ /* image is quantized and compressed like a float image. */ if (++iarg >= argc) { fp_usage (); exit (-1); } else { fpptr->n3ratio = (float) atof (argv[iarg]); } } else if (!strcmp(argv[iarg], "-n3min")) { /* this is the minimum MAD noise sigma in the case where the */ /* integer image is quantized and compressed like a float image. */ if (++iarg >= argc) { fp_usage (); exit (-1); } else { fpptr->n3min = (float) atof (argv[iarg]); } } else if (argv[iarg][1] == 'q') { /* test for modifiers following the 'q' */ if (argv[iarg][2] == 'z') { fpptr->dither_method = 2; /* preserve zero pixels */ if (argv[iarg][3] == 't') { fpptr->dither_offset = -1; /* dither based on tile checksum */ } else if (isdigit(argv[iarg][3])) { /* is a number appended to q? */ doffset = atoi(argv[iarg]+3); if (doffset == 0) { fpptr->no_dither = 1; /* don't dither the quantized values */ } else if (doffset > 0 && doffset <= 10000) { fpptr->dither_offset = doffset; } else { fp_msg ("Error: invalid q suffix\n"); fp_usage (); exit (-1); } } } else { if (argv[iarg][2] == 't') { fpptr->dither_offset = -1; /* dither based on tile checksum */ } else if (isdigit(argv[iarg][2])) { /* is a number appended to q? */ doffset = atoi(argv[iarg]+2); if (doffset == 0) { fpptr->no_dither = 1; /* don't dither the quantized values */ } else if (doffset > 0 && doffset <= 10000) { fpptr->dither_offset = doffset; } else { fp_msg ("Error: invalid q suffix\n"); fp_usage (); exit (-1); } } } if (++iarg >= argc) { fp_usage (); exit (-1); } else { fpptr->quantize_level = (float) atof (argv[iarg]); } } else if (argv[iarg][1] == 'n') { if (++iarg >= argc) { fp_usage (); exit (-1); } else { fpptr->rescale_noise = (float) atof (argv[iarg]); } } else if (argv[iarg][1] == 's') { if (++iarg >= argc) { fp_usage (); exit (-1); } else { fpptr->scale = (float) atof (argv[iarg]); } } else if (!strcmp(argv[iarg], "-tableonly")) { fpptr->do_tables = 1; fpptr->do_images = 0; fp_msg ("Note: -tableonly is intended for feasibility studies, not general use.\n"); } else if (!strcmp(argv[iarg], "-table")) { fpptr->do_tables = 1; fp_msg ("Note: -table is intended for feasibility studies, not general use.\n"); } else if (argv[iarg][1] == 't') { if (gottile) { fp_msg ("Error: multiple tile specifications\n"); fp_usage (); exit (-1); } else gottile++; if (++iarg >= argc) { fp_usage (); exit (-1); } else strncpy (tile, argv[iarg], SZ_STR); /* checked below */ } else if (argv[iarg][1] == 'v') { fpptr->verbose = 1; } else if (argv[iarg][1] == 'w') { wholetile++; if (gottile) { fp_msg ("Error: multiple tile specifications\n"); fp_usage (); exit (-1); } else gottile++; } else if (argv[iarg][1] == 'F') { fpptr->clobber++; /* overwrite existing file */ } else if (argv[iarg][1] == 'D') { fpptr->delete_input++; } else if (argv[iarg][1] == 'Y') { fpptr->do_not_prompt++; } else if (argv[iarg][1] == 'S') { fpptr->to_stdout++; } else if (argv[iarg][1] == 'L') { fpptr->listonly++; } else if (argv[iarg][1] == 'C') { fpptr->do_checksums = 0; } else if (argv[iarg][1] == 'T') { fpptr->test_all = 1; } else if (argv[iarg][1] == 'R') { if (++iarg >= argc) { fp_usage (); fp_hint (); exit (-1); } else strncpy (fpptr->outfile, argv[iarg], SZ_STR); } else if (argv[iarg][1] == 'H') { fp_help (); exit (0); } else if (argv[iarg][1] == 'V') { fp_version (); exit (0); } else { fp_msg ("Error: unknown command line flag `"); fp_msg (argv[iarg]); fp_msg ("'\n"); fp_usage (); fp_hint (); exit (-1); } } else break; } if (fpptr->scale != 0. && fpptr->comptype != HCOMPRESS_1 && fpptr->test_all != 1) { fp_msg ("Error: `-s' requires `-h or -T'\n"); exit (-1); } if (fpptr->quantize_level == 0) { if ((fpptr->comptype != GZIP_1) && (fpptr->comptype != GZIP_2)) { fp_msg ("Error: `-q 0' only allowed with GZIP\n"); exit (-1); } if (fpptr->int_to_float == 1) { fp_msg ("Error: `-q 0' not allowed with -i2f\n"); exit (-1); } } if (wholetile) { for (ndim=0; ndim < MAX_COMPRESS_DIM; ndim++) fpptr->ntile[ndim] = (long) -1; } else if (gottile) { len = strlen (tile); for (ii=0, ndim=0; ii < len; ) { if (! (isdigit (tile[ii]) || tile[ii] == ',')) { fp_msg ("Error: `-t' requires comma separated tile dims, "); fp_msg ("e.g., `-t 100,100'\n"); exit (-1); } if (tile[ii] == ',') { ii++; continue; } fpptr->ntile[ndim] = atol (&tile[ii]); for ( ; isdigit(tile[ii]); ii++); if (++ndim > MAX_COMPRESS_DIM) { fp_msg ("Error: too many dimensions for `-t', max="); sprintf (tmp, "%d\n", MAX_COMPRESS_DIM); fp_msg (tmp); exit (-1); } } } if (iarg >= argc) { fp_msg ("Error: no FITS files to compress\n"); fp_usage (); exit (-1); } else fpptr->firstfile = iarg; return(0); } /* ================================================================== */ int fp_usage (void) { fp_msg ("usage: fpack "); fp_msg ( "[-r|-h|-g|-p] [-w|-t ] [-q ] [-s ] [-n ] -v \n"); fp_msg ("more: [-T] [-R] [-F] [-D] [-Y] [-S] [-L] [-C] [-H] [-V] [-i2f]\n"); return(0); } /* ================================================================== */ int fp_hint (void) { fp_msg (" `fpack -H' for help\n"); return(0); } /* ================================================================== */ int fp_help (void) { fp_msg ("fpack, a FITS image compression program. Version "); fp_version (); fp_usage (); fp_msg ("\n"); fp_msg ("NOTE: the compression parameters specified on the fpack command line may\n"); fp_msg ("be over-ridden by compression directive keywords in the header of each HDU\n"); fp_msg ("of the input file(s). See the fpack User's Guide for more details\n"); fp_msg ("\n"); fp_msg ("Flags must be separate and appear before filenames:\n"); fp_msg (" -r Rice compression [default], or\n"); fp_msg (" -h Hcompress compression, or\n"); fp_msg (" -g or -g1 GZIP_1 (per-tile) compression, or\n"); fp_msg (" -g2 GZIP_2 (per-tile) compression (with byte shuffling), or\n"); /* fp_msg (" -b BZIP2 (per-tile) compression, or\n"); */ fp_msg (" -p PLIO compression (only for positive 8 or 16-bit integer images).\n"); fp_msg (" -d Tile the image without compression (debugging mode).\n"); fp_msg (" -w Compress the whole image as a single large tile.\n"); fp_msg (" -t Comma separated list of tile dimensions [default is row by row].\n"); fp_msg (" -q Quantized level spacing when converting floating point images to\n"); fp_msg (" scaled integers. (+value relative to sigma of background noise;\n"); fp_msg (" -value is absolute). Default q value of 4 gives a compression ratio\n"); fp_msg (" of about 6 with very high fidelity (only 0.26% increase in noise).\n"); fp_msg (" Using q values of 2, or 1 will give compression ratios of\n"); fp_msg (" about 8, or 10, respectively (with 1.0% or 4.1% noise increase).\n"); fp_msg (" The scaled quantized values are randomly dithered using a seed \n"); fp_msg (" value determined from the system clock at run time.\n"); fp_msg (" Use -q0 instead of -q to suppress random dithering.\n"); fp_msg (" Use -qz instead of -q to not dither zero-valued pixels.\n"); fp_msg (" Use -qt or -qzt to compute random dithering seed from first tile checksum.\n"); fp_msg (" Use -qN or -qzN, (N in range 1 to 10000) to use a specific dithering seed.\n"); fp_msg (" Floating-point images can be losslessly compressed by selecting\n"); fp_msg (" the GZIP algorithm and specifying -q 0, but this is slower and often\n"); fp_msg (" produces much less compression than the default quantization method.\n"); fp_msg (" -i2f Convert integer images to floating point, then quantize and compress\n"); fp_msg (" using the specified q level. When used appropriately, this lossy\n"); fp_msg (" compression method can give much better compression than the normal\n"); fp_msg (" lossless compression methods without significant loss of information.\n"); fp_msg (" The -n3ratio and -n3min flags control the minimum noise thresholds;\n"); fp_msg (" Images below these thresholds will be losslessly compressed.\n"); fp_msg (" -n3ratio Minimum ratio of background noise sigma divided by q. Default = 2.0.\n"); fp_msg (" -n3min Minimum background noise sigma. Default = 6. The -i2f flag will be ignored\n"); fp_msg (" if the noise level in the image does not exceed both thresholds.\n"); fp_msg (" -s Scale factor for lossy Hcompress [default = 0 = lossless]\n"); fp_msg (" (+values relative to RMS noise; -value is absolute)\n"); fp_msg (" -n Rescale scaled-integer images to reduce noise and improve compression.\n"); fp_msg (" -v Verbose mode; list each file as it is processed.\n"); fp_msg (" -T Show compression algorithm comparison test statistics; files unchanged.\n"); fp_msg (" -R Write the comparison test report (above) to a text file.\n"); fp_msg (" -table Compress FITS binary tables using prototype method, as well as compress\n"); fp_msg (" any image HDUs. This option is intended for experimental use.\n"); fp_msg (" -tableonly Compress only FITS binary tables using prototype method; do not compress\n"); fp_msg (" any image HDUs. This option is intended for experimental use.\n"); fp_msg ("\nkeywords shared with funpack:\n"); fp_msg (" -F Overwrite input file by output file with same name.\n"); fp_msg (" -D Delete input file after writing output.\n"); fp_msg (" -Y Suppress prompts to confirm -F or -D options.\n"); fp_msg (" -S Output compressed FITS files to STDOUT.\n"); fp_msg (" -L List contents; files unchanged.\n"); fp_msg (" -C Don't update FITS checksum keywords.\n"); fp_msg (" -H Show this message.\n"); fp_msg (" -V Show version number.\n"); fp_msg ("\n FITS files to pack; enter '-' (a hyphen) to read input from stdin stream.\n"); fp_msg (" Refer to the fpack User's Guide for more extensive help.\n"); return(0); } healpy-1.8.1/cfitsio/putcolu.c0000654000175000017530000005177712272000775016735 0ustar zoncaplanck00000000000000/* This file, putcolu.c, contains routines that write data elements to */ /* a FITS image or table. Writes null values. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffppru( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to write(1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ int *status) /* IO - error status */ /* Write null values to the primary array. */ { long row; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ ffpmsg("writing to compressed image is not supported"); return(*status = DATA_COMPRESSION_ERR); } row=maxvalue(1,group); ffpclu(fptr, 2, row, firstelem, nelem, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffpprn( fitsfile *fptr, /* I - FITS file pointer */ LONGLONG firstelem, /* I - first vector element to write(1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ int *status) /* IO - error status */ /* Write null values to the primary array. (Doesn't support groups). */ { long row = 1; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ ffpmsg("writing to compressed image is not supported"); return(*status = DATA_COMPRESSION_ERR); } ffpclu(fptr, 2, row, firstelem, nelem, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffpclu( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelempar, /* I - number of values to write */ int *status) /* IO - error status */ /* Set elements of a table column to the appropriate null value for the column The column number may refer to a real column in an ASCII or binary table, or it may refer to a virtual column in a 1 or more grouped FITS primary array. FITSIO treats a primary array as a binary table with 2 vector columns: the first column contains the group parameters (often with length = 0) and the second column contains the array of image pixels. Each row of the table represents a group in the case of multigroup FITS images. This routine support COMPLEX and DOUBLE COMPLEX binary table columns, and sets both the real and imaginary components of the element to a NaN. */ { int tcode, maxelem, hdutype, writemode = 2, leng; short i2null; INT32BIT i4null; long twidth, incre; LONGLONG ii; LONGLONG largeelem, nelem, tnull, i8null; LONGLONG repeat, startpos, elemnum, wrtptr, rowlen, rownum, remain, next, ntodo; double scale, zero; unsigned char i1null, lognul = 0; char tform[20], *cstring = 0; char message[FLEN_ERRMSG]; char snull[20]; /* the FITS null value */ long jbuff[2] = { -1, -1}; /* all bits set is equivalent to a NaN */ size_t buffsize; if (*status > 0) /* inherit input status value if > 0 */ return(*status); nelem = nelempar; largeelem = firstelem; /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ /* note that writemode = 2 by default (not 1), so that the returned */ /* repeat and incre values will be the actual values for this column. */ /* If writing nulls to a variable length column then dummy data values */ /* must have already been written to the heap. */ /* We just have to overwrite the previous values with null values. */ /* Set writemode = 0 in this case, to test that values have been written */ fits_get_coltype(fptr, colnum, &tcode, NULL, NULL, status); if (tcode < 0) writemode = 0; /* this is a variable length column */ if (abs(tcode) >= TCOMPLEX) { /* treat complex columns as pairs of numbers */ largeelem = (largeelem - 1) * 2 + 1; nelem *= 2; } if (ffgcprll( fptr, colnum, firstrow, largeelem, nelem, writemode, &scale, &zero, tform, &twidth, &tcode, &maxelem, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0) return(*status); if (tcode == TSTRING) { if (snull[0] == ASCII_NULL_UNDEFINED) { ffpmsg( "Null value string for ASCII table column is not defined (FTPCLU)."); return(*status = NO_NULL); } /* allocate buffer to hold the null string. Must write the entire */ /* width of the column (twidth bytes) to avoid possible problems */ /* with uninitialized FITS blocks, in case the field spans blocks */ buffsize = maxvalue(20, twidth); cstring = (char *) malloc(buffsize); if (!cstring) return(*status = MEMORY_ALLOCATION); memset(cstring, ' ', buffsize); /* initialize with blanks */ leng = strlen(snull); if (hdutype == BINARY_TBL) leng++; /* copy the terminator too in binary tables */ strncpy(cstring, snull, leng); /* copy null string to temp buffer */ } else if ( tcode == TBYTE || tcode == TSHORT || tcode == TLONG || tcode == TLONGLONG) { if (tnull == NULL_UNDEFINED) { ffpmsg( "Null value for integer table column is not defined (FTPCLU)."); return(*status = NO_NULL); } if (tcode == TBYTE) i1null = (unsigned char) tnull; else if (tcode == TSHORT) { i2null = (short) tnull; #if BYTESWAPPED ffswap2(&i2null, 1); /* reverse order of bytes */ #endif } else if (tcode == TLONG) { i4null = (INT32BIT) tnull; #if BYTESWAPPED ffswap4(&i4null, 1); /* reverse order of bytes */ #endif } else { i8null = tnull; #if BYTESWAPPED ffswap8((double *)(&i8null), 1); /* reverse order of bytes */ #endif } } /*---------------------------------------------------------------------*/ /* Now write the pixels to the FITS column. */ /*---------------------------------------------------------------------*/ remain = nelem; /* remaining number of values to write */ next = 0; /* next element in array to be written */ rownum = 0; /* row number, relative to firstrow */ ntodo = remain; /* number of elements to write at one time */ while (ntodo) { /* limit the number of pixels to process at one time to the number that will fit in the buffer space or to the number of pixels that remain in the current vector, which ever is smaller. */ ntodo = minvalue(ntodo, (repeat - elemnum)); wrtptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * incre); ffmbyt(fptr, wrtptr, IGNORE_EOF, status); /* move to write position */ switch (tcode) { case (TBYTE): for (ii = 0; ii < ntodo; ii++) ffpbyt(fptr, 1, &i1null, status); break; case (TSHORT): for (ii = 0; ii < ntodo; ii++) ffpbyt(fptr, 2, &i2null, status); break; case (TLONG): for (ii = 0; ii < ntodo; ii++) ffpbyt(fptr, 4, &i4null, status); break; case (TLONGLONG): for (ii = 0; ii < ntodo; ii++) ffpbyt(fptr, 8, &i8null, status); break; case (TFLOAT): for (ii = 0; ii < ntodo; ii++) ffpbyt(fptr, 4, jbuff, status); break; case (TDOUBLE): for (ii = 0; ii < ntodo; ii++) ffpbyt(fptr, 8, jbuff, status); break; case (TLOGICAL): for (ii = 0; ii < ntodo; ii++) ffpbyt(fptr, 1, &lognul, status); break; case (TSTRING): /* an ASCII table column */ /* repeat always = 1, so ntodo is also guaranteed to = 1 */ ffpbyt(fptr, twidth, cstring, status); break; default: /* error trap */ sprintf(message, "Cannot write null value to column %d which has format %s", colnum,tform); ffpmsg(message); return(*status); } /* End of switch block */ /*-------------------------*/ /* Check for fatal error */ /*-------------------------*/ if (*status > 0) /* test for error during previous write operation */ { sprintf(message, "Error writing %.0f thru %.0f of null values (ffpclu).", (double) (next+1), (double) (next+ntodo)); ffpmsg(message); if (cstring) free(cstring); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain -= ntodo; if (remain) { next += ntodo; elemnum += ntodo; if (elemnum == repeat) /* completed a row; start on next row */ { elemnum = 0; rownum++; } } ntodo = remain; /* this is the maximum number to do in next loop */ } /* End of main while Loop */ if (cstring) free(cstring); return(*status); } /*--------------------------------------------------------------------------*/ int ffpcluc( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ int *status) /* IO - error status */ /* Set elements of a table column to the appropriate null value for the column The column number may refer to a real column in an ASCII or binary table, or it may refer to a virtual column in a 1 or more grouped FITS primary array. FITSIO treats a primary array as a binary table with 2 vector columns: the first column contains the group parameters (often with length = 0) and the second column contains the array of image pixels. Each row of the table represents a group in the case of multigroup FITS images. This routine does not do anything special in the case of COMPLEX table columns (unlike the similar ffpclu routine). This routine is mainly for use by ffpcne which already compensates for the effective doubling of the number of elements in a complex column. */ { int tcode, maxelem, hdutype, writemode = 2, leng; short i2null; INT32BIT i4null; long twidth, incre; LONGLONG ii; LONGLONG tnull, i8null; LONGLONG repeat, startpos, elemnum, wrtptr, rowlen, rownum, remain, next, ntodo; double scale, zero; unsigned char i1null, lognul = 0; char tform[20], *cstring = 0; char message[FLEN_ERRMSG]; char snull[20]; /* the FITS null value */ long jbuff[2] = { -1, -1}; /* all bits set is equivalent to a NaN */ size_t buffsize; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ /* note that writemode = 2 by default (not 1), so that the returned */ /* repeat and incre values will be the actual values for this column. */ /* If writing nulls to a variable length column then dummy data values */ /* must have already been written to the heap. */ /* We just have to overwrite the previous values with null values. */ /* Set writemode = 0 in this case, to test that values have been written */ fits_get_coltype(fptr, colnum, &tcode, NULL, NULL, status); if (tcode < 0) writemode = 0; /* this is a variable length column */ if (ffgcprll( fptr, colnum, firstrow, firstelem, nelem, writemode, &scale, &zero, tform, &twidth, &tcode, &maxelem, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0) return(*status); if (tcode == TSTRING) { if (snull[0] == ASCII_NULL_UNDEFINED) { ffpmsg( "Null value string for ASCII table column is not defined (FTPCLU)."); return(*status = NO_NULL); } /* allocate buffer to hold the null string. Must write the entire */ /* width of the column (twidth bytes) to avoid possible problems */ /* with uninitialized FITS blocks, in case the field spans blocks */ buffsize = maxvalue(20, twidth); cstring = (char *) malloc(buffsize); if (!cstring) return(*status = MEMORY_ALLOCATION); memset(cstring, ' ', buffsize); /* initialize with blanks */ leng = strlen(snull); if (hdutype == BINARY_TBL) leng++; /* copy the terminator too in binary tables */ strncpy(cstring, snull, leng); /* copy null string to temp buffer */ } else if ( tcode == TBYTE || tcode == TSHORT || tcode == TLONG || tcode == TLONGLONG) { if (tnull == NULL_UNDEFINED) { ffpmsg( "Null value for integer table column is not defined (FTPCLU)."); return(*status = NO_NULL); } if (tcode == TBYTE) i1null = (unsigned char) tnull; else if (tcode == TSHORT) { i2null = (short) tnull; #if BYTESWAPPED ffswap2(&i2null, 1); /* reverse order of bytes */ #endif } else if (tcode == TLONG) { i4null = (INT32BIT) tnull; #if BYTESWAPPED ffswap4(&i4null, 1); /* reverse order of bytes */ #endif } else { i8null = tnull; #if BYTESWAPPED ffswap4( (INT32BIT*) &i8null, 2); /* reverse order of bytes */ #endif } } /*---------------------------------------------------------------------*/ /* Now write the pixels to the FITS column. */ /*---------------------------------------------------------------------*/ remain = nelem; /* remaining number of values to write */ next = 0; /* next element in array to be written */ rownum = 0; /* row number, relative to firstrow */ ntodo = remain; /* number of elements to write at one time */ while (ntodo) { /* limit the number of pixels to process at one time to the number that will fit in the buffer space or to the number of pixels that remain in the current vector, which ever is smaller. */ ntodo = minvalue(ntodo, (repeat - elemnum)); wrtptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * incre); ffmbyt(fptr, wrtptr, IGNORE_EOF, status); /* move to write position */ switch (tcode) { case (TBYTE): for (ii = 0; ii < ntodo; ii++) ffpbyt(fptr, 1, &i1null, status); break; case (TSHORT): for (ii = 0; ii < ntodo; ii++) ffpbyt(fptr, 2, &i2null, status); break; case (TLONG): for (ii = 0; ii < ntodo; ii++) ffpbyt(fptr, 4, &i4null, status); break; case (TLONGLONG): for (ii = 0; ii < ntodo; ii++) ffpbyt(fptr, 8, &i8null, status); break; case (TFLOAT): for (ii = 0; ii < ntodo; ii++) ffpbyt(fptr, 4, jbuff, status); break; case (TDOUBLE): for (ii = 0; ii < ntodo; ii++) ffpbyt(fptr, 8, jbuff, status); break; case (TLOGICAL): for (ii = 0; ii < ntodo; ii++) ffpbyt(fptr, 1, &lognul, status); break; case (TSTRING): /* an ASCII table column */ /* repeat always = 1, so ntodo is also guaranteed to = 1 */ ffpbyt(fptr, twidth, cstring, status); break; default: /* error trap */ sprintf(message, "Cannot write null value to column %d which has format %s", colnum,tform); ffpmsg(message); return(*status); } /* End of switch block */ /*-------------------------*/ /* Check for fatal error */ /*-------------------------*/ if (*status > 0) /* test for error during previous write operation */ { sprintf(message, "Error writing %.0f thru %.0f of null values (ffpclu).", (double) (next+1), (double) (next+ntodo)); ffpmsg(message); if (cstring) free(cstring); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain -= ntodo; if (remain) { next += ntodo; elemnum += ntodo; if (elemnum == repeat) /* completed a row; start on next row */ { elemnum = 0; rownum++; } } ntodo = remain; /* this is the maximum number to do in next loop */ } /* End of main while Loop */ if (cstring) free(cstring); return(*status); } /*--------------------------------------------------------------------------*/ int ffprwu(fitsfile *fptr, LONGLONG firstrow, LONGLONG nrows, int *status) /* * fits_write_nullrows / ffprwu - write TNULLs to all columns in one or more rows * * fitsfile *fptr - pointer to FITS HDU opened for read/write * long int firstrow - first table row to set to null. (firstrow >= 1) * long int nrows - total number or rows to set to null. (nrows >= 1) * int *status - upon return, *status contains CFITSIO status code * * RETURNS: CFITSIO status code * * written by Craig Markwardt, GSFC */ { LONGLONG ntotrows; int ncols, i; int typecode = 0; LONGLONG repeat = 0, width = 0; int nullstatus; if (*status > 0) return *status; if ((firstrow <= 0) || (nrows <= 0)) return (*status = BAD_ROW_NUM); fits_get_num_rowsll(fptr, &ntotrows, status); if (firstrow + nrows - 1 > ntotrows) return (*status = BAD_ROW_NUM); fits_get_num_cols(fptr, &ncols, status); if (*status) return *status; /* Loop through each column and write nulls */ for (i=1; i <= ncols; i++) { repeat = 0; typecode = 0; width = 0; fits_get_coltypell(fptr, i, &typecode, &repeat, &width, status); if (*status) break; /* NOTE: data of TSTRING type must not write the total repeat count, since the repeat count is the *character* count, not the nstring count. Divide by string width to get number of strings. */ if (typecode == TSTRING) repeat /= width; /* Write NULLs */ nullstatus = 0; fits_write_col_null(fptr, i, firstrow, 1, repeat*nrows, &nullstatus); /* ignore error if no null value is defined for the column */ if (nullstatus && nullstatus != NO_NULL) return (*status = nullstatus); } return *status; } healpy-1.8.1/cfitsio/iter_b.fit0000654000175000017530000143660012272000775017037 0ustar zoncaplanck00000000000000SIMPLE = T / file does conform to FITS standard BITPIX = 16 / number of bits per data pixel NAXIS = 0 / number of data axes EXTEND = T / FITS dataset may contain extensions COMMENT FITS (Flexible Image Transport System) format defined in Astronomy andCOMMENT Astrophysics Supplement Series v44/p363, v44/p371, v73/p359, v73/p365.COMMENT Contact the NASA Science Office of Standards and Technology for the COMMENT FITS Definition document #100 and other FITS information. END XTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / 8-bit bytes NAXIS = 2 / 2-dimensional binary table NAXIS1 = 4021 / width of table in bytes NAXIS2 = 100 / number of rows in table PCOUNT = 0 / size of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 3 / number of fields in each row TTYPE1 = 'Avalue ' / label for field 1 TFORM1 = '20A ' / data format of field: ASCII Character TTYPE2 = 'Lvalue ' / label for field 2 TFORM2 = '1L ' / data format of field: 1-byte LOGICAL TUNIT2 = 'm**2 ' / physical unit of field TTYPE3 = 'Evalue ' / label for field 3 TFORM3 = '1000E ' / data format of field: 4-byte REAL TUNIT3 = 'cm ' / physical unit of field EXTNAME = 'iter_test' / name of this binary table extension END changed to false Fchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to false Fchanged to true Tchanged to true Tchanged to true Tchanged to true Tchanged to true Thealpy-1.8.1/cfitsio/makepc.bat0000654000175000017530000000440312272000775017006 0ustar zoncaplanck00000000000000rem: this batch file builds the cfitsio library rem: using the Borland C++ v4.5 or new free v5.5 compiler rem: bcc32 -c buffers.c bcc32 -c cfileio.c bcc32 -c checksum.c bcc32 -c drvrfile.c bcc32 -c drvrmem.c bcc32 -c editcol.c bcc32 -c edithdu.c bcc32 -c eval_l.c bcc32 -c eval_y.c bcc32 -c eval_f.c bcc32 -c fitscore.c bcc32 -c getcol.c bcc32 -c getcolb.c bcc32 -c getcolsb.c bcc32 -c getcoli.c bcc32 -c getcolj.c bcc32 -c getcolui.c bcc32 -c getcoluj.c bcc32 -c getcoluk.c bcc32 -c getcolk.c bcc32 -c getcole.c bcc32 -c getcold.c bcc32 -c getcoll.c bcc32 -c getcols.c bcc32 -c getkey.c bcc32 -c group.c bcc32 -c grparser.c bcc32 -c histo.c bcc32 -c iraffits.c bcc32 -c modkey.c bcc32 -c putcol.c bcc32 -c putcolb.c bcc32 -c putcolsb.c bcc32 -c putcoli.c bcc32 -c putcolj.c bcc32 -c putcolui.c bcc32 -c putcoluj.c bcc32 -c putcoluk.c bcc32 -c putcolk.c bcc32 -c putcole.c bcc32 -c putcold.c bcc32 -c putcols.c bcc32 -c putcoll.c bcc32 -c putcolu.c bcc32 -c putkey.c bcc32 -c region.c bcc32 -c scalnull.c bcc32 -c swapproc.c bcc32 -c wcsutil.c bcc32 -c wcssub.c bcc32 -c imcompress.c bcc32 -c quantize.c bcc32 -c ricecomp.c bcc32 -c pliocomp.c bcc32 -c fits_hcompress.c bcc32 -c fits_hdecompress.c bcc32 -c zuncompress.c bcc32 -c zcompress.c bcc32 -c adler32.c bcc32 -c crc32.c bcc32 -c inffast.c bcc32 -c inftrees.c bcc32 -c trees.c bcc32 -c zutil.c bcc32 -c deflate.c bcc32 -c infback.c bcc32 -c inflate.c bcc32 -c uncompr.c del cfitsio.lib tlib cfitsio +buffers +cfileio +checksum +drvrfile +drvrmem tlib cfitsio +editcol +edithdu +eval_l +eval_y +eval_f +fitscore tlib cfitsio +getcol +getcolb +getcolsb +getcoli +getcolj +getcolk +getcoluk tlib cfitsio +getcolui +getcoluj +getcole +getcold +getcoll +getcols tlib cfitsio +getkey +group +grparser +histo +iraffits +modkey +putkey tlib cfitsio +putcol +putcolb +putcoli +putcolj +putcolk +putcole +putcold tlib cfitsio +putcoll +putcols +putcolu +putcolui +putcoluj +putcoluk tlib cfitsio +region +scalnull +swapproc +wcsutil +wcssub +putcolsb tlib cfitsio +imcompress +quantize +ricecomp +pliocomp tlib cfitsio +fits_hcompress +fits_hdecompress tlib cfitsio +zuncompress +zcompress +adler32 +crc32 +inffast tlib cfitsio +inftrees +trees +zutil +deflate +infback +inflate +uncompr bcc32 -f testprog.c cfitsio.lib bcc32 -f cookbook.c cfitsio.lib healpy-1.8.1/cfitsio/quantize.c0000654000175000017530000034727312272000775017101 0ustar zoncaplanck00000000000000/* The following code is based on algorithms written by Richard White at STScI and made available for use in CFITSIO in July 1999 and updated in January 2008. */ # include # include # include # include # include #include "fitsio2.h" /* nearest integer function */ # define NINT(x) ((x >= 0.) ? (int) (x + 0.5) : (int) (x - 0.5)) #define NULL_VALUE -2147483647 /* value used to represent undefined pixels */ #define ZERO_VALUE -2147483646 /* value used to represent zero-valued pixels */ #define N_RESERVED_VALUES 10 /* number of reserved values, starting with */ /* and including NULL_VALUE. These values */ /* may not be used to represent the quantized */ /* and scaled floating point pixel values */ /* If lossy Hcompression is used, and the */ /* array contains null values, then it is also */ /* possible for the compressed values to slightly */ /* exceed the range of the actual (lossless) values */ /* so we must reserve a little more space */ /* more than this many standard deviations from the mean is an outlier */ # define SIGMA_CLIP 5. # define NITER 3 /* number of sigma-clipping iterations */ static int FnMeanSigma_short(short *array, long npix, int nullcheck, short nullvalue, long *ngoodpix, double *mean, double *sigma, int *status); static int FnMeanSigma_int(int *array, long npix, int nullcheck, int nullvalue, long *ngoodpix, double *mean, double *sigma, int *status); static int FnMeanSigma_float(float *array, long npix, int nullcheck, float nullvalue, long *ngoodpix, double *mean, double *sigma, int *status); static int FnMeanSigma_double(double *array, long npix, int nullcheck, double nullvalue, long *ngoodpix, double *mean, double *sigma, int *status); static int FnNoise5_short(short *array, long nx, long ny, int nullcheck, short nullvalue, long *ngood, short *minval, short *maxval, double *n2, double *n3, double *n5, int *status); static int FnNoise5_int(int *array, long nx, long ny, int nullcheck, int nullvalue, long *ngood, int *minval, int *maxval, double *n2, double *n3, double *n5, int *status); static int FnNoise5_float(float *array, long nx, long ny, int nullcheck, float nullvalue, long *ngood, float *minval, float *maxval, double *n2, double *n3, double *n5, int *status); static int FnNoise5_double(double *array, long nx, long ny, int nullcheck, double nullvalue, long *ngood, double *minval, double *maxval, double *n2, double *n3, double *n5, int *status); static int FnNoise3_short(short *array, long nx, long ny, int nullcheck, short nullvalue, long *ngood, short *minval, short *maxval, double *noise, int *status); static int FnNoise3_int(int *array, long nx, long ny, int nullcheck, int nullvalue, long *ngood, int *minval, int *maxval, double *noise, int *status); static int FnNoise3_float(float *array, long nx, long ny, int nullcheck, float nullvalue, long *ngood, float *minval, float *maxval, double *noise, int *status); static int FnNoise3_double(double *array, long nx, long ny, int nullcheck, double nullvalue, long *ngood, double *minval, double *maxval, double *noise, int *status); static int FnNoise1_short(short *array, long nx, long ny, int nullcheck, short nullvalue, double *noise, int *status); static int FnNoise1_int(int *array, long nx, long ny, int nullcheck, int nullvalue, double *noise, int *status); static int FnNoise1_float(float *array, long nx, long ny, int nullcheck, float nullvalue, double *noise, int *status); static int FnNoise1_double(double *array, long nx, long ny, int nullcheck, double nullvalue, double *noise, int *status); static int FnCompare_short (const void *, const void *); static int FnCompare_int (const void *, const void *); static int FnCompare_float (const void *, const void *); static int FnCompare_double (const void *, const void *); static float quick_select_float(float arr[], int n); static short quick_select_short(short arr[], int n); static int quick_select_int(int arr[], int n); static LONGLONG quick_select_longlong(LONGLONG arr[], int n); static double quick_select_double(double arr[], int n); /*---------------------------------------------------------------------------*/ int fits_quantize_float (long row, float fdata[], long nxpix, long nypix, int nullcheck, float in_null_value, float qlevel, int dither_method, int idata[], double *bscale, double *bzero, int *iminval, int *imaxval) { /* arguments: long row i: if positive, used to calculate random dithering seed value (this is only used when dithering the quantized values) float fdata[] i: array of image pixels to be compressed long nxpix i: number of pixels in each row of fdata long nypix i: number of rows in fdata nullcheck i: check for nullvalues in fdata? float in_null_value i: value used to represent undefined pixels in fdata float qlevel i: quantization level int dither_method i; which dithering method to use int idata[] o: values of fdata after applying bzero and bscale double bscale o: scale factor double bzero o: zero offset int iminval o: minimum quantized value that is returned int imaxval o: maximum quantized value that is returned The function value will be one if the input fdata were copied to idata; in this case the parameters bscale and bzero can be used to convert back to nearly the original floating point values: fdata ~= idata * bscale + bzero. If the function value is zero, the data were not copied to idata. */ int status, iseed = 0; long i, nx, ngood = 0; double stdev, noise2, noise3, noise5; /* MAD 2nd, 3rd, and 5th order noise values */ float minval = 0., maxval = 0.; /* min & max of fdata */ double delta; /* bscale, 1 in idata = delta in fdata */ double zeropt; /* bzero */ double temp; int nextrand = 0; extern float *fits_rand_value; /* this is defined in imcompress.c */ LONGLONG iqfactor; nx = nxpix * nypix; if (nx <= 1) { *bscale = 1.; *bzero = 0.; return (0); } if (qlevel >= 0.) { /* estimate background noise using MAD pixel differences */ FnNoise5_float(fdata, nxpix, nypix, nullcheck, in_null_value, &ngood, &minval, &maxval, &noise2, &noise3, &noise5, &status); if (nullcheck && ngood == 0) { /* special case of an image filled with Nulls */ /* set parameters to dummy values, which are not used */ minval = 0.; maxval = 1.; stdev = 1; } else { /* use the minimum of noise2, noise3, and noise5 as the best noise value */ stdev = noise3; if (noise2 != 0. && noise2 < stdev) stdev = noise2; if (noise5 != 0. && noise5 < stdev) stdev = noise5; } if (qlevel == 0.) delta = stdev / 4.; /* default quantization */ else delta = stdev / qlevel; if (delta == 0.) return (0); /* don't quantize */ } else { /* negative value represents the absolute quantization level */ delta = -qlevel; /* only nned to calculate the min and max values */ FnNoise3_float(fdata, nxpix, nypix, nullcheck, in_null_value, &ngood, &minval, &maxval, 0, &status); } /* check that the range of quantized levels is not > range of int */ if ((maxval - minval) / delta > 2. * 2147483647. - N_RESERVED_VALUES ) return (0); /* don't quantize */ if (row > 0) { /* we need to dither the quantized values */ if (!fits_rand_value) if (fits_init_randoms()) return(MEMORY_ALLOCATION); /* initialize the index to the next random number in the list */ iseed = (int) ((row - 1) % N_RANDOM); nextrand = (int) (fits_rand_value[iseed] * 500.); } if (ngood == nx) { /* don't have to check for nulls */ /* return all positive values, if possible since some */ /* compression algorithms either only work for positive integers, */ /* or are more efficient. */ if (dither_method == SUBTRACTIVE_DITHER_2) { /* shift the range to be close to the value used to represent zeros */ zeropt = minval - delta * (NULL_VALUE + N_RESERVED_VALUES); } else if ((maxval - minval) / delta < 2147483647. - N_RESERVED_VALUES ) { zeropt = minval; /* fudge the zero point so it is an integer multiple of delta */ /* This helps to ensure the same scaling will be performed if the */ /* file undergoes multiple fpack/funpack cycles */ iqfactor = (LONGLONG) (zeropt/delta + 0.5); zeropt = iqfactor * delta; } else { /* center the quantized levels around zero */ zeropt = (minval + maxval) / 2.; } if (row > 0) { /* dither the values when quantizing */ for (i = 0; i < nx; i++) { if (dither_method == SUBTRACTIVE_DITHER_2 && fdata[i] == 0.0) { idata[i] = ZERO_VALUE; } else { idata[i] = NINT((((double) fdata[i] - zeropt) / delta) + fits_rand_value[nextrand] - 0.5); } nextrand++; if (nextrand == N_RANDOM) { iseed++; if (iseed == N_RANDOM) iseed = 0; nextrand = (int) (fits_rand_value[iseed] * 500); } } } else { /* do not dither the values */ for (i = 0; i < nx; i++) { idata[i] = NINT ((fdata[i] - zeropt) / delta); } } } else { /* data contains null values; shift the range to be */ /* close to the value used to represent null values */ zeropt = minval - delta * (NULL_VALUE + N_RESERVED_VALUES); if (row > 0) { /* dither the values */ for (i = 0; i < nx; i++) { if (fdata[i] != in_null_value) { if (dither_method == SUBTRACTIVE_DITHER_2 && fdata[i] == 0.0) { idata[i] = ZERO_VALUE; } else { idata[i] = NINT((((double) fdata[i] - zeropt) / delta) + fits_rand_value[nextrand] - 0.5); } } else { idata[i] = NULL_VALUE; } /* increment the random number index, regardless */ nextrand++; if (nextrand == N_RANDOM) { iseed++; if (iseed == N_RANDOM) iseed = 0; nextrand = (int) (fits_rand_value[iseed] * 500); } } } else { /* do not dither the values */ for (i = 0; i < nx; i++) { if (fdata[i] != in_null_value) { idata[i] = NINT((fdata[i] - zeropt) / delta); } else { idata[i] = NULL_VALUE; } } } } /* calc min and max values */ temp = (minval - zeropt) / delta; *iminval = NINT (temp); temp = (maxval - zeropt) / delta; *imaxval = NINT (temp); *bscale = delta; *bzero = zeropt; return (1); /* yes, data have been quantized */ } /*---------------------------------------------------------------------------*/ int fits_quantize_double (long row, double fdata[], long nxpix, long nypix, int nullcheck, double in_null_value, float qlevel, int dither_method, int idata[], double *bscale, double *bzero, int *iminval, int *imaxval) { /* arguments: long row i: tile number = row number in the binary table double fdata[] i: array of image pixels to be compressed long nxpix i: number of pixels in each row of fdata long nypix i: number of rows in fdata nullcheck i: check for nullvalues in fdata? double in_null_value i: value used to represent undefined pixels in fdata float qlevel i: quantization level int dither_method i; which dithering method to use int idata[] o: values of fdata after applying bzero and bscale double bscale o: scale factor double bzero o: zero offset int iminval o: minimum quantized value that is returned int imaxval o: maximum quantized value that is returned The function value will be one if the input fdata were copied to idata; in this case the parameters bscale and bzero can be used to convert back to nearly the original floating point values: fdata ~= idata * bscale + bzero. If the function value is zero, the data were not copied to idata. */ int status, iseed = 0; long i, nx, ngood = 0; double stdev, noise2 = 0., noise3 = 0., noise5 = 0.; /* MAD 2nd, 3rd, and 5th order noise values */ double minval = 0., maxval = 0.; /* min & max of fdata */ double delta; /* bscale, 1 in idata = delta in fdata */ double zeropt; /* bzero */ double temp; int nextrand = 0; extern float *fits_rand_value; LONGLONG iqfactor; nx = nxpix * nypix; if (nx <= 1) { *bscale = 1.; *bzero = 0.; return (0); } if (qlevel >= 0.) { /* estimate background noise using MAD pixel differences */ FnNoise5_double(fdata, nxpix, nypix, nullcheck, in_null_value, &ngood, &minval, &maxval, &noise2, &noise3, &noise5, &status); if (nullcheck && ngood == 0) { /* special case of an image filled with Nulls */ /* set parameters to dummy values, which are not used */ minval = 0.; maxval = 1.; stdev = 1; } else { /* use the minimum of noise2, noise3, and noise5 as the best noise value */ stdev = noise3; if (noise2 != 0. && noise2 < stdev) stdev = noise2; if (noise5 != 0. && noise5 < stdev) stdev = noise5; } if (qlevel == 0.) delta = stdev / 4.; /* default quantization */ else delta = stdev / qlevel; if (delta == 0.) return (0); /* don't quantize */ } else { /* negative value represents the absolute quantization level */ delta = -qlevel; /* only nned to calculate the min and max values */ FnNoise3_double(fdata, nxpix, nypix, nullcheck, in_null_value, &ngood, &minval, &maxval, 0, &status); } /* check that the range of quantized levels is not > range of int */ if ((maxval - minval) / delta > 2. * 2147483647. - N_RESERVED_VALUES ) return (0); /* don't quantize */ if (row > 0) { /* we need to dither the quantized values */ if (!fits_rand_value) if (fits_init_randoms()) return(MEMORY_ALLOCATION); /* initialize the index to the next random number in the list */ iseed = (int) ((row - 1) % N_RANDOM); nextrand = (int) (fits_rand_value[iseed] * 500); } if (ngood == nx) { /* don't have to check for nulls */ /* return all positive values, if possible since some */ /* compression algorithms either only work for positive integers, */ /* or are more efficient. */ if (dither_method == SUBTRACTIVE_DITHER_2) { /* shift the range to be close to the value used to represent zeros */ zeropt = minval - delta * (NULL_VALUE + N_RESERVED_VALUES); } else if ((maxval - minval) / delta < 2147483647. - N_RESERVED_VALUES ) { zeropt = minval; /* fudge the zero point so it is an integer multiple of delta */ /* This helps to ensure the same scaling will be performed if the */ /* file undergoes multiple fpack/funpack cycles */ iqfactor = (LONGLONG) (zeropt/delta + 0.5); zeropt = iqfactor * delta; } else { /* center the quantized levels around zero */ zeropt = (minval + maxval) / 2.; } if (row > 0) { /* dither the values when quantizing */ for (i = 0; i < nx; i++) { if (dither_method == SUBTRACTIVE_DITHER_2 && fdata[i] == 0.0) { idata[i] = ZERO_VALUE; } else { idata[i] = NINT((((double) fdata[i] - zeropt) / delta) + fits_rand_value[nextrand] - 0.5); } nextrand++; if (nextrand == N_RANDOM) { iseed++; nextrand = (int) (fits_rand_value[iseed] * 500); } } } else { /* do not dither the values */ for (i = 0; i < nx; i++) { idata[i] = NINT ((fdata[i] - zeropt) / delta); } } } else { /* data contains null values; shift the range to be */ /* close to the value used to represent null values */ zeropt = minval - delta * (NULL_VALUE + N_RESERVED_VALUES); if (row > 0) { /* dither the values */ for (i = 0; i < nx; i++) { if (fdata[i] != in_null_value) { if (dither_method == SUBTRACTIVE_DITHER_2 && fdata[i] == 0.0) { idata[i] = ZERO_VALUE; } else { idata[i] = NINT((((double) fdata[i] - zeropt) / delta) + fits_rand_value[nextrand] - 0.5); } } else { idata[i] = NULL_VALUE; } /* increment the random number index, regardless */ nextrand++; if (nextrand == N_RANDOM) { iseed++; nextrand = (int) (fits_rand_value[iseed] * 500); } } } else { /* do not dither the values */ for (i = 0; i < nx; i++) { if (fdata[i] != in_null_value) idata[i] = NINT((fdata[i] - zeropt) / delta); else idata[i] = NULL_VALUE; } } } /* calc min and max values */ temp = (minval - zeropt) / delta; *iminval = NINT (temp); temp = (maxval - zeropt) / delta; *imaxval = NINT (temp); *bscale = delta; *bzero = zeropt; return (1); /* yes, data have been quantized */ } /*--------------------------------------------------------------------------*/ int fits_img_stats_short(short *array, /* 2 dimensional array of image pixels */ long nx, /* number of pixels in each row of the image */ long ny, /* number of rows in the image */ /* (if this is a 3D image, then ny should be the */ /* product of the no. of rows times the no. of planes) */ int nullcheck, /* check for null values, if true */ short nullvalue, /* value of null pixels, if nullcheck is true */ /* returned parameters (if the pointer is not null) */ long *ngoodpix, /* number of non-null pixels in the image */ short *minvalue, /* returned minimum non-null value in the array */ short *maxvalue, /* returned maximum non-null value in the array */ double *mean, /* returned mean value of all non-null pixels */ double *sigma, /* returned R.M.S. value of all non-null pixels */ double *noise1, /* 1st order estimate of noise in image background level */ double *noise2, /* 2nd order estimate of noise in image background level */ double *noise3, /* 3rd order estimate of noise in image background level */ double *noise5, /* 5th order estimate of noise in image background level */ int *status) /* error status */ /* Compute statistics of the input short integer image. */ { long ngood; short minval = 0, maxval = 0; double xmean = 0., xsigma = 0., xnoise = 0., xnoise2 = 0., xnoise3 = 0., xnoise5 = 0.; /* need to calculate mean and/or sigma and/or limits? */ if (mean || sigma ) { FnMeanSigma_short(array, nx * ny, nullcheck, nullvalue, &ngood, &xmean, &xsigma, status); if (ngoodpix) *ngoodpix = ngood; if (mean) *mean = xmean; if (sigma) *sigma = xsigma; } if (noise1) { FnNoise1_short(array, nx, ny, nullcheck, nullvalue, &xnoise, status); *noise1 = xnoise; } if (minvalue || maxvalue || noise3) { FnNoise5_short(array, nx, ny, nullcheck, nullvalue, &ngood, &minval, &maxval, &xnoise2, &xnoise3, &xnoise5, status); if (ngoodpix) *ngoodpix = ngood; if (minvalue) *minvalue= minval; if (maxvalue) *maxvalue = maxval; if (noise2) *noise2 = xnoise2; if (noise3) *noise3 = xnoise3; if (noise5) *noise5 = xnoise5; } return(*status); } /*--------------------------------------------------------------------------*/ int fits_img_stats_int(int *array, /* 2 dimensional array of image pixels */ long nx, /* number of pixels in each row of the image */ long ny, /* number of rows in the image */ /* (if this is a 3D image, then ny should be the */ /* product of the no. of rows times the no. of planes) */ int nullcheck, /* check for null values, if true */ int nullvalue, /* value of null pixels, if nullcheck is true */ /* returned parameters (if the pointer is not null) */ long *ngoodpix, /* number of non-null pixels in the image */ int *minvalue, /* returned minimum non-null value in the array */ int *maxvalue, /* returned maximum non-null value in the array */ double *mean, /* returned mean value of all non-null pixels */ double *sigma, /* returned R.M.S. value of all non-null pixels */ double *noise1, /* 1st order estimate of noise in image background level */ double *noise2, /* 2nd order estimate of noise in image background level */ double *noise3, /* 3rd order estimate of noise in image background level */ double *noise5, /* 5th order estimate of noise in image background level */ int *status) /* error status */ /* Compute statistics of the input integer image. */ { long ngood; int minval = 0, maxval = 0; double xmean = 0., xsigma = 0., xnoise = 0., xnoise2 = 0., xnoise3 = 0., xnoise5 = 0.; /* need to calculate mean and/or sigma and/or limits? */ if (mean || sigma ) { FnMeanSigma_int(array, nx * ny, nullcheck, nullvalue, &ngood, &xmean, &xsigma, status); if (ngoodpix) *ngoodpix = ngood; if (mean) *mean = xmean; if (sigma) *sigma = xsigma; } if (noise1) { FnNoise1_int(array, nx, ny, nullcheck, nullvalue, &xnoise, status); *noise1 = xnoise; } if (minvalue || maxvalue || noise3) { FnNoise5_int(array, nx, ny, nullcheck, nullvalue, &ngood, &minval, &maxval, &xnoise2, &xnoise3, &xnoise5, status); if (ngoodpix) *ngoodpix = ngood; if (minvalue) *minvalue= minval; if (maxvalue) *maxvalue = maxval; if (noise2) *noise2 = xnoise2; if (noise3) *noise3 = xnoise3; if (noise5) *noise5 = xnoise5; } return(*status); } /*--------------------------------------------------------------------------*/ int fits_img_stats_float(float *array, /* 2 dimensional array of image pixels */ long nx, /* number of pixels in each row of the image */ long ny, /* number of rows in the image */ /* (if this is a 3D image, then ny should be the */ /* product of the no. of rows times the no. of planes) */ int nullcheck, /* check for null values, if true */ float nullvalue, /* value of null pixels, if nullcheck is true */ /* returned parameters (if the pointer is not null) */ long *ngoodpix, /* number of non-null pixels in the image */ float *minvalue, /* returned minimum non-null value in the array */ float *maxvalue, /* returned maximum non-null value in the array */ double *mean, /* returned mean value of all non-null pixels */ double *sigma, /* returned R.M.S. value of all non-null pixels */ double *noise1, /* 1st order estimate of noise in image background level */ double *noise2, /* 2nd order estimate of noise in image background level */ double *noise3, /* 3rd order estimate of noise in image background level */ double *noise5, /* 5th order estimate of noise in image background level */ int *status) /* error status */ /* Compute statistics of the input float image. */ { long ngood; float minval, maxval; double xmean = 0., xsigma = 0., xnoise = 0., xnoise2 = 0., xnoise3 = 0., xnoise5 = 0.; /* need to calculate mean and/or sigma and/or limits? */ if (mean || sigma ) { FnMeanSigma_float(array, nx * ny, nullcheck, nullvalue, &ngood, &xmean, &xsigma, status); if (ngoodpix) *ngoodpix = ngood; if (mean) *mean = xmean; if (sigma) *sigma = xsigma; } if (noise1) { FnNoise1_float(array, nx, ny, nullcheck, nullvalue, &xnoise, status); *noise1 = xnoise; } if (minvalue || maxvalue || noise3) { FnNoise5_float(array, nx, ny, nullcheck, nullvalue, &ngood, &minval, &maxval, &xnoise2, &xnoise3, &xnoise5, status); if (ngoodpix) *ngoodpix = ngood; if (minvalue) *minvalue= minval; if (maxvalue) *maxvalue = maxval; if (noise2) *noise2 = xnoise2; if (noise3) *noise3 = xnoise3; if (noise5) *noise5 = xnoise5; } return(*status); } /*--------------------------------------------------------------------------*/ static int FnMeanSigma_short (short *array, /* 2 dimensional array of image pixels */ long npix, /* number of pixels in the image */ int nullcheck, /* check for null values, if true */ short nullvalue, /* value of null pixels, if nullcheck is true */ /* returned parameters */ long *ngoodpix, /* number of non-null pixels in the image */ double *mean, /* returned mean value of all non-null pixels */ double *sigma, /* returned R.M.S. value of all non-null pixels */ int *status) /* error status */ /* Compute mean and RMS sigma of the non-null pixels in the input array. */ { long ii, ngood = 0; short *value; double sum = 0., sum2 = 0., xtemp; value = array; if (nullcheck) { for (ii = 0; ii < npix; ii++, value++) { if (*value != nullvalue) { ngood++; xtemp = (double) *value; sum += xtemp; sum2 += (xtemp * xtemp); } } } else { ngood = npix; for (ii = 0; ii < npix; ii++, value++) { xtemp = (double) *value; sum += xtemp; sum2 += (xtemp * xtemp); } } if (ngood > 1) { if (ngoodpix) *ngoodpix = ngood; xtemp = sum / ngood; if (mean) *mean = xtemp; if (sigma) *sigma = sqrt((sum2 / ngood) - (xtemp * xtemp)); } else if (ngood == 1){ if (ngoodpix) *ngoodpix = 1; if (mean) *mean = sum; if (sigma) *sigma = 0.0; } else { if (ngoodpix) *ngoodpix = 0; if (mean) *mean = 0.; if (sigma) *sigma = 0.; } return(*status); } /*--------------------------------------------------------------------------*/ static int FnMeanSigma_int (int *array, /* 2 dimensional array of image pixels */ long npix, /* number of pixels in the image */ int nullcheck, /* check for null values, if true */ int nullvalue, /* value of null pixels, if nullcheck is true */ /* returned parameters */ long *ngoodpix, /* number of non-null pixels in the image */ double *mean, /* returned mean value of all non-null pixels */ double *sigma, /* returned R.M.S. value of all non-null pixels */ int *status) /* error status */ /* Compute mean and RMS sigma of the non-null pixels in the input array. */ { long ii, ngood = 0; int *value; double sum = 0., sum2 = 0., xtemp; value = array; if (nullcheck) { for (ii = 0; ii < npix; ii++, value++) { if (*value != nullvalue) { ngood++; xtemp = (double) *value; sum += xtemp; sum2 += (xtemp * xtemp); } } } else { ngood = npix; for (ii = 0; ii < npix; ii++, value++) { xtemp = (double) *value; sum += xtemp; sum2 += (xtemp * xtemp); } } if (ngood > 1) { if (ngoodpix) *ngoodpix = ngood; xtemp = sum / ngood; if (mean) *mean = xtemp; if (sigma) *sigma = sqrt((sum2 / ngood) - (xtemp * xtemp)); } else if (ngood == 1){ if (ngoodpix) *ngoodpix = 1; if (mean) *mean = sum; if (sigma) *sigma = 0.0; } else { if (ngoodpix) *ngoodpix = 0; if (mean) *mean = 0.; if (sigma) *sigma = 0.; } return(*status); } /*--------------------------------------------------------------------------*/ static int FnMeanSigma_float (float *array, /* 2 dimensional array of image pixels */ long npix, /* number of pixels in the image */ int nullcheck, /* check for null values, if true */ float nullvalue, /* value of null pixels, if nullcheck is true */ /* returned parameters */ long *ngoodpix, /* number of non-null pixels in the image */ double *mean, /* returned mean value of all non-null pixels */ double *sigma, /* returned R.M.S. value of all non-null pixels */ int *status) /* error status */ /* Compute mean and RMS sigma of the non-null pixels in the input array. */ { long ii, ngood = 0; float *value; double sum = 0., sum2 = 0., xtemp; value = array; if (nullcheck) { for (ii = 0; ii < npix; ii++, value++) { if (*value != nullvalue) { ngood++; xtemp = (double) *value; sum += xtemp; sum2 += (xtemp * xtemp); } } } else { ngood = npix; for (ii = 0; ii < npix; ii++, value++) { xtemp = (double) *value; sum += xtemp; sum2 += (xtemp * xtemp); } } if (ngood > 1) { if (ngoodpix) *ngoodpix = ngood; xtemp = sum / ngood; if (mean) *mean = xtemp; if (sigma) *sigma = sqrt((sum2 / ngood) - (xtemp * xtemp)); } else if (ngood == 1){ if (ngoodpix) *ngoodpix = 1; if (mean) *mean = sum; if (sigma) *sigma = 0.0; } else { if (ngoodpix) *ngoodpix = 0; if (mean) *mean = 0.; if (sigma) *sigma = 0.; } return(*status); } /*--------------------------------------------------------------------------*/ static int FnMeanSigma_double (double *array, /* 2 dimensional array of image pixels */ long npix, /* number of pixels in the image */ int nullcheck, /* check for null values, if true */ double nullvalue, /* value of null pixels, if nullcheck is true */ /* returned parameters */ long *ngoodpix, /* number of non-null pixels in the image */ double *mean, /* returned mean value of all non-null pixels */ double *sigma, /* returned R.M.S. value of all non-null pixels */ int *status) /* error status */ /* Compute mean and RMS sigma of the non-null pixels in the input array. */ { long ii, ngood = 0; double *value; double sum = 0., sum2 = 0., xtemp; value = array; if (nullcheck) { for (ii = 0; ii < npix; ii++, value++) { if (*value != nullvalue) { ngood++; xtemp = *value; sum += xtemp; sum2 += (xtemp * xtemp); } } } else { ngood = npix; for (ii = 0; ii < npix; ii++, value++) { xtemp = *value; sum += xtemp; sum2 += (xtemp * xtemp); } } if (ngood > 1) { if (ngoodpix) *ngoodpix = ngood; xtemp = sum / ngood; if (mean) *mean = xtemp; if (sigma) *sigma = sqrt((sum2 / ngood) - (xtemp * xtemp)); } else if (ngood == 1){ if (ngoodpix) *ngoodpix = 1; if (mean) *mean = sum; if (sigma) *sigma = 0.0; } else { if (ngoodpix) *ngoodpix = 0; if (mean) *mean = 0.; if (sigma) *sigma = 0.; } return(*status); } /*--------------------------------------------------------------------------*/ static int FnNoise5_short (short *array, /* 2 dimensional array of image pixels */ long nx, /* number of pixels in each row of the image */ long ny, /* number of rows in the image */ int nullcheck, /* check for null values, if true */ short nullvalue, /* value of null pixels, if nullcheck is true */ /* returned parameters */ long *ngood, /* number of good, non-null pixels? */ short *minval, /* minimum non-null value */ short *maxval, /* maximum non-null value */ double *noise2, /* returned 2nd order MAD of all non-null pixels */ double *noise3, /* returned 3rd order MAD of all non-null pixels */ double *noise5, /* returned 5th order MAD of all non-null pixels */ int *status) /* error status */ /* Estimate the median and background noise in the input image using 2nd, 3rd and 5th order Median Absolute Differences. The noise in the background of the image is calculated using the MAD algorithms developed for deriving the signal to noise ratio in spectra (see issue #42 of the ST-ECF newsletter, http://www.stecf.org/documents/newsletter/) 3rd order: noise = 1.482602 / sqrt(6) * median (abs(2*flux(i) - flux(i-2) - flux(i+2))) The returned estimates are the median of the values that are computed for each row of the image. */ { long ii, jj, nrows = 0, nrows2 = 0, nvals, nvals2, ngoodpix = 0; int *differences2, *differences3, *differences5; short *rowpix, v1, v2, v3, v4, v5, v6, v7, v8, v9; short xminval = SHRT_MAX, xmaxval = SHRT_MIN; int do_range = 0; double *diffs2, *diffs3, *diffs5; double xnoise2 = 0, xnoise3 = 0, xnoise5 = 0; if (nx < 5) { /* treat entire array as an image with a single row */ nx = nx * ny; ny = 1; } /* rows must have at least 9 pixels */ if (nx < 9) { for (ii = 0; ii < nx; ii++) { if (nullcheck && array[ii] == nullvalue) continue; else { if (array[ii] < xminval) xminval = array[ii]; if (array[ii] > xmaxval) xmaxval = array[ii]; ngoodpix++; } } if (minval) *minval = xminval; if (maxval) *maxval = xmaxval; if (ngood) *ngood = ngoodpix; if (noise2) *noise2 = 0.; if (noise3) *noise3 = 0.; if (noise5) *noise5 = 0.; return(*status); } /* do we need to compute the min and max value? */ if (minval || maxval) do_range = 1; /* allocate arrays used to compute the median and noise estimates */ differences2 = calloc(nx, sizeof(int)); if (!differences2) { *status = MEMORY_ALLOCATION; return(*status); } differences3 = calloc(nx, sizeof(int)); if (!differences3) { free(differences2); *status = MEMORY_ALLOCATION; return(*status); } differences5 = calloc(nx, sizeof(int)); if (!differences5) { free(differences2); free(differences3); *status = MEMORY_ALLOCATION; return(*status); } diffs2 = calloc(ny, sizeof(double)); if (!diffs2) { free(differences2); free(differences3); free(differences5); *status = MEMORY_ALLOCATION; return(*status); } diffs3 = calloc(ny, sizeof(double)); if (!diffs3) { free(differences2); free(differences3); free(differences5); free(diffs2); *status = MEMORY_ALLOCATION; return(*status); } diffs5 = calloc(ny, sizeof(double)); if (!diffs5) { free(differences2); free(differences3); free(differences5); free(diffs2); free(diffs3); *status = MEMORY_ALLOCATION; return(*status); } /* loop over each row of the image */ for (jj=0; jj < ny; jj++) { rowpix = array + (jj * nx); /* point to first pixel in the row */ /***** find the first valid pixel in row */ ii = 0; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v1 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v1 < xminval) xminval = v1; if (v1 > xmaxval) xmaxval = v1; } /***** find the 2nd valid pixel in row (which we will skip over) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v2 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v2 < xminval) xminval = v2; if (v2 > xmaxval) xmaxval = v2; } /***** find the 3rd valid pixel in row */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v3 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v3 < xminval) xminval = v3; if (v3 > xmaxval) xmaxval = v3; } /* find the 4nd valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v4 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v4 < xminval) xminval = v4; if (v4 > xmaxval) xmaxval = v4; } /* find the 5th valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v5 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v5 < xminval) xminval = v5; if (v5 > xmaxval) xmaxval = v5; } /* find the 6th valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v6 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v6 < xminval) xminval = v6; if (v6 > xmaxval) xmaxval = v6; } /* find the 7th valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v7 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v7 < xminval) xminval = v7; if (v7 > xmaxval) xmaxval = v7; } /* find the 8th valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v8 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v8 < xminval) xminval = v8; if (v8 > xmaxval) xmaxval = v8; } /* now populate the differences arrays */ /* for the remaining pixels in the row */ nvals = 0; nvals2 = 0; for (ii++; ii < nx; ii++) { /* find the next valid pixel in row */ if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) break; /* hit end of row */ v9 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v9 < xminval) xminval = v9; if (v9 > xmaxval) xmaxval = v9; } /* construct array of absolute differences */ if (!(v5 == v6 && v6 == v7) ) { differences2[nvals2] = abs((int) v5 - (int) v7); nvals2++; } if (!(v3 == v4 && v4 == v5 && v5 == v6 && v6 == v7) ) { differences3[nvals] = abs((2 * (int) v5) - (int) v3 - (int) v7); differences5[nvals] = abs((6 * (int) v5) - (4 * (int) v3) - (4 * (int) v7) + (int) v1 + (int) v9); nvals++; } else { /* ignore constant background regions */ ngoodpix++; } /* shift over 1 pixel */ v1 = v2; v2 = v3; v3 = v4; v4 = v5; v5 = v6; v6 = v7; v7 = v8; v8 = v9; } /* end of loop over pixels in the row */ /* compute the median diffs */ /* Note that there are 8 more pixel values than there are diffs values. */ ngoodpix += (nvals + 8); if (nvals == 0) { continue; /* cannot compute medians on this row */ } else if (nvals == 1) { if (nvals2 == 1) { diffs2[nrows2] = differences2[0]; nrows2++; } diffs3[nrows] = differences3[0]; diffs5[nrows] = differences5[0]; } else { /* quick_select returns the median MUCH faster than using qsort */ if (nvals2 > 1) { diffs2[nrows2] = quick_select_int(differences2, nvals); nrows2++; } diffs3[nrows] = quick_select_int(differences3, nvals); diffs5[nrows] = quick_select_int(differences5, nvals); } nrows++; } /* end of loop over rows */ /* compute median of the values for each row */ if (nrows == 0) { xnoise3 = 0; xnoise5 = 0; } else if (nrows == 1) { xnoise3 = diffs3[0]; xnoise5 = diffs5[0]; } else { qsort(diffs3, nrows, sizeof(double), FnCompare_double); qsort(diffs5, nrows, sizeof(double), FnCompare_double); xnoise3 = (diffs3[(nrows - 1)/2] + diffs3[nrows/2]) / 2.; xnoise5 = (diffs5[(nrows - 1)/2] + diffs5[nrows/2]) / 2.; } if (nrows2 == 0) { xnoise2 = 0; } else if (nrows2 == 1) { xnoise2 = diffs2[0]; } else { qsort(diffs2, nrows2, sizeof(double), FnCompare_double); xnoise2 = (diffs2[(nrows2 - 1)/2] + diffs2[nrows2/2]) / 2.; } if (ngood) *ngood = ngoodpix; if (minval) *minval = xminval; if (maxval) *maxval = xmaxval; if (noise2) *noise2 = 1.0483579 * xnoise2; if (noise3) *noise3 = 0.6052697 * xnoise3; if (noise5) *noise5 = 0.1772048 * xnoise5; free(diffs5); free(diffs3); free(diffs2); free(differences5); free(differences3); free(differences2); return(*status); } /*--------------------------------------------------------------------------*/ static int FnNoise5_int (int *array, /* 2 dimensional array of image pixels */ long nx, /* number of pixels in each row of the image */ long ny, /* number of rows in the image */ int nullcheck, /* check for null values, if true */ int nullvalue, /* value of null pixels, if nullcheck is true */ /* returned parameters */ long *ngood, /* number of good, non-null pixels? */ int *minval, /* minimum non-null value */ int *maxval, /* maximum non-null value */ double *noise2, /* returned 2nd order MAD of all non-null pixels */ double *noise3, /* returned 3rd order MAD of all non-null pixels */ double *noise5, /* returned 5th order MAD of all non-null pixels */ int *status) /* error status */ /* Estimate the median and background noise in the input image using 2nd, 3rd and 5th order Median Absolute Differences. The noise in the background of the image is calculated using the MAD algorithms developed for deriving the signal to noise ratio in spectra (see issue #42 of the ST-ECF newsletter, http://www.stecf.org/documents/newsletter/) 3rd order: noise = 1.482602 / sqrt(6) * median (abs(2*flux(i) - flux(i-2) - flux(i+2))) The returned estimates are the median of the values that are computed for each row of the image. */ { long ii, jj, nrows = 0, nrows2 = 0, nvals, nvals2, ngoodpix = 0; LONGLONG *differences2, *differences3, *differences5, tdiff; int *rowpix, v1, v2, v3, v4, v5, v6, v7, v8, v9; int xminval = INT_MAX, xmaxval = INT_MIN; int do_range = 0; double *diffs2, *diffs3, *diffs5; double xnoise2 = 0, xnoise3 = 0, xnoise5 = 0; if (nx < 5) { /* treat entire array as an image with a single row */ nx = nx * ny; ny = 1; } /* rows must have at least 9 pixels */ if (nx < 9) { for (ii = 0; ii < nx; ii++) { if (nullcheck && array[ii] == nullvalue) continue; else { if (array[ii] < xminval) xminval = array[ii]; if (array[ii] > xmaxval) xmaxval = array[ii]; ngoodpix++; } } if (minval) *minval = xminval; if (maxval) *maxval = xmaxval; if (ngood) *ngood = ngoodpix; if (noise2) *noise2 = 0.; if (noise3) *noise3 = 0.; if (noise5) *noise5 = 0.; return(*status); } /* do we need to compute the min and max value? */ if (minval || maxval) do_range = 1; /* allocate arrays used to compute the median and noise estimates */ differences2 = calloc(nx, sizeof(LONGLONG)); if (!differences2) { *status = MEMORY_ALLOCATION; return(*status); } differences3 = calloc(nx, sizeof(LONGLONG)); if (!differences3) { free(differences2); *status = MEMORY_ALLOCATION; return(*status); } differences5 = calloc(nx, sizeof(LONGLONG)); if (!differences5) { free(differences2); free(differences3); *status = MEMORY_ALLOCATION; return(*status); } diffs2 = calloc(ny, sizeof(double)); if (!diffs2) { free(differences2); free(differences3); free(differences5); *status = MEMORY_ALLOCATION; return(*status); } diffs3 = calloc(ny, sizeof(double)); if (!diffs3) { free(differences2); free(differences3); free(differences5); free(diffs2); *status = MEMORY_ALLOCATION; return(*status); } diffs5 = calloc(ny, sizeof(double)); if (!diffs5) { free(differences2); free(differences3); free(differences5); free(diffs2); free(diffs3); *status = MEMORY_ALLOCATION; return(*status); } /* loop over each row of the image */ for (jj=0; jj < ny; jj++) { rowpix = array + (jj * nx); /* point to first pixel in the row */ /***** find the first valid pixel in row */ ii = 0; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v1 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v1 < xminval) xminval = v1; if (v1 > xmaxval) xmaxval = v1; } /***** find the 2nd valid pixel in row (which we will skip over) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v2 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v2 < xminval) xminval = v2; if (v2 > xmaxval) xmaxval = v2; } /***** find the 3rd valid pixel in row */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v3 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v3 < xminval) xminval = v3; if (v3 > xmaxval) xmaxval = v3; } /* find the 4nd valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v4 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v4 < xminval) xminval = v4; if (v4 > xmaxval) xmaxval = v4; } /* find the 5th valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v5 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v5 < xminval) xminval = v5; if (v5 > xmaxval) xmaxval = v5; } /* find the 6th valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v6 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v6 < xminval) xminval = v6; if (v6 > xmaxval) xmaxval = v6; } /* find the 7th valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v7 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v7 < xminval) xminval = v7; if (v7 > xmaxval) xmaxval = v7; } /* find the 8th valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v8 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v8 < xminval) xminval = v8; if (v8 > xmaxval) xmaxval = v8; } /* now populate the differences arrays */ /* for the remaining pixels in the row */ nvals = 0; nvals2 = 0; for (ii++; ii < nx; ii++) { /* find the next valid pixel in row */ if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) break; /* hit end of row */ v9 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v9 < xminval) xminval = v9; if (v9 > xmaxval) xmaxval = v9; } /* construct array of absolute differences */ if (!(v5 == v6 && v6 == v7) ) { tdiff = (LONGLONG) v5 - (LONGLONG) v7; if (tdiff < 0) differences2[nvals2] = -1 * tdiff; else differences2[nvals2] = tdiff; nvals2++; } if (!(v3 == v4 && v4 == v5 && v5 == v6 && v6 == v7) ) { tdiff = (2 * (LONGLONG) v5) - (LONGLONG) v3 - (LONGLONG) v7; if (tdiff < 0) differences3[nvals] = -1 * tdiff; else differences3[nvals] = tdiff; tdiff = (6 * (LONGLONG) v5) - (4 * (LONGLONG) v3) - (4 * (LONGLONG) v7) + (LONGLONG) v1 + (LONGLONG) v9; if (tdiff < 0) differences5[nvals] = -1 * tdiff; else differences5[nvals] = tdiff; nvals++; } else { /* ignore constant background regions */ ngoodpix++; } /* shift over 1 pixel */ v1 = v2; v2 = v3; v3 = v4; v4 = v5; v5 = v6; v6 = v7; v7 = v8; v8 = v9; } /* end of loop over pixels in the row */ /* compute the median diffs */ /* Note that there are 8 more pixel values than there are diffs values. */ ngoodpix += (nvals + 8); if (nvals == 0) { continue; /* cannot compute medians on this row */ } else if (nvals == 1) { if (nvals2 == 1) { diffs2[nrows2] = (double) differences2[0]; nrows2++; } diffs3[nrows] = (double) differences3[0]; diffs5[nrows] = (double) differences5[0]; } else { /* quick_select returns the median MUCH faster than using qsort */ if (nvals2 > 1) { diffs2[nrows2] = (double) quick_select_longlong(differences2, nvals); nrows2++; } diffs3[nrows] = (double) quick_select_longlong(differences3, nvals); diffs5[nrows] = (double) quick_select_longlong(differences5, nvals); } nrows++; } /* end of loop over rows */ /* compute median of the values for each row */ if (nrows == 0) { xnoise3 = 0; xnoise5 = 0; } else if (nrows == 1) { xnoise3 = diffs3[0]; xnoise5 = diffs5[0]; } else { qsort(diffs3, nrows, sizeof(double), FnCompare_double); qsort(diffs5, nrows, sizeof(double), FnCompare_double); xnoise3 = (diffs3[(nrows - 1)/2] + diffs3[nrows/2]) / 2.; xnoise5 = (diffs5[(nrows - 1)/2] + diffs5[nrows/2]) / 2.; } if (nrows2 == 0) { xnoise2 = 0; } else if (nrows2 == 1) { xnoise2 = diffs2[0]; } else { qsort(diffs2, nrows2, sizeof(double), FnCompare_double); xnoise2 = (diffs2[(nrows2 - 1)/2] + diffs2[nrows2/2]) / 2.; } if (ngood) *ngood = ngoodpix; if (minval) *minval = xminval; if (maxval) *maxval = xmaxval; if (noise2) *noise2 = 1.0483579 * xnoise2; if (noise3) *noise3 = 0.6052697 * xnoise3; if (noise5) *noise5 = 0.1772048 * xnoise5; free(diffs5); free(diffs3); free(diffs2); free(differences5); free(differences3); free(differences2); return(*status); } /*--------------------------------------------------------------------------*/ static int FnNoise5_float (float *array, /* 2 dimensional array of image pixels */ long nx, /* number of pixels in each row of the image */ long ny, /* number of rows in the image */ int nullcheck, /* check for null values, if true */ float nullvalue, /* value of null pixels, if nullcheck is true */ /* returned parameters */ long *ngood, /* number of good, non-null pixels? */ float *minval, /* minimum non-null value */ float *maxval, /* maximum non-null value */ double *noise2, /* returned 2nd order MAD of all non-null pixels */ double *noise3, /* returned 3rd order MAD of all non-null pixels */ double *noise5, /* returned 5th order MAD of all non-null pixels */ int *status) /* error status */ /* Estimate the median and background noise in the input image using 2nd, 3rd and 5th order Median Absolute Differences. The noise in the background of the image is calculated using the MAD algorithms developed for deriving the signal to noise ratio in spectra (see issue #42 of the ST-ECF newsletter, http://www.stecf.org/documents/newsletter/) 3rd order: noise = 1.482602 / sqrt(6) * median (abs(2*flux(i) - flux(i-2) - flux(i+2))) The returned estimates are the median of the values that are computed for each row of the image. */ { long ii, jj, nrows = 0, nrows2 = 0, nvals, nvals2, ngoodpix = 0; float *differences2, *differences3, *differences5; float *rowpix, v1, v2, v3, v4, v5, v6, v7, v8, v9; float xminval = FLT_MAX, xmaxval = -FLT_MAX; int do_range = 0; double *diffs2, *diffs3, *diffs5; double xnoise2 = 0, xnoise3 = 0, xnoise5 = 0; if (nx < 5) { /* treat entire array as an image with a single row */ nx = nx * ny; ny = 1; } /* rows must have at least 9 pixels */ if (nx < 9) { for (ii = 0; ii < nx; ii++) { if (nullcheck && array[ii] == nullvalue) continue; else { if (array[ii] < xminval) xminval = array[ii]; if (array[ii] > xmaxval) xmaxval = array[ii]; ngoodpix++; } } if (minval) *minval = xminval; if (maxval) *maxval = xmaxval; if (ngood) *ngood = ngoodpix; if (noise2) *noise2 = 0.; if (noise3) *noise3 = 0.; if (noise5) *noise5 = 0.; return(*status); } /* do we need to compute the min and max value? */ if (minval || maxval) do_range = 1; /* allocate arrays used to compute the median and noise estimates */ differences2 = calloc(nx, sizeof(float)); if (!differences2) { *status = MEMORY_ALLOCATION; return(*status); } differences3 = calloc(nx, sizeof(float)); if (!differences3) { free(differences2); *status = MEMORY_ALLOCATION; return(*status); } differences5 = calloc(nx, sizeof(float)); if (!differences5) { free(differences2); free(differences3); *status = MEMORY_ALLOCATION; return(*status); } diffs2 = calloc(ny, sizeof(double)); if (!diffs2) { free(differences2); free(differences3); free(differences5); *status = MEMORY_ALLOCATION; return(*status); } diffs3 = calloc(ny, sizeof(double)); if (!diffs3) { free(differences2); free(differences3); free(differences5); free(diffs2); *status = MEMORY_ALLOCATION; return(*status); } diffs5 = calloc(ny, sizeof(double)); if (!diffs5) { free(differences2); free(differences3); free(differences5); free(diffs2); free(diffs3); *status = MEMORY_ALLOCATION; return(*status); } /* loop over each row of the image */ for (jj=0; jj < ny; jj++) { rowpix = array + (jj * nx); /* point to first pixel in the row */ /***** find the first valid pixel in row */ ii = 0; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v1 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v1 < xminval) xminval = v1; if (v1 > xmaxval) xmaxval = v1; } /***** find the 2nd valid pixel in row (which we will skip over) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v2 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v2 < xminval) xminval = v2; if (v2 > xmaxval) xmaxval = v2; } /***** find the 3rd valid pixel in row */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v3 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v3 < xminval) xminval = v3; if (v3 > xmaxval) xmaxval = v3; } /* find the 4nd valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v4 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v4 < xminval) xminval = v4; if (v4 > xmaxval) xmaxval = v4; } /* find the 5th valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v5 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v5 < xminval) xminval = v5; if (v5 > xmaxval) xmaxval = v5; } /* find the 6th valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v6 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v6 < xminval) xminval = v6; if (v6 > xmaxval) xmaxval = v6; } /* find the 7th valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v7 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v7 < xminval) xminval = v7; if (v7 > xmaxval) xmaxval = v7; } /* find the 8th valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v8 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v8 < xminval) xminval = v8; if (v8 > xmaxval) xmaxval = v8; } /* now populate the differences arrays */ /* for the remaining pixels in the row */ nvals = 0; nvals2 = 0; for (ii++; ii < nx; ii++) { /* find the next valid pixel in row */ if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) break; /* hit end of row */ v9 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v9 < xminval) xminval = v9; if (v9 > xmaxval) xmaxval = v9; } /* construct array of absolute differences */ if (!(v5 == v6 && v6 == v7) ) { differences2[nvals2] = (float) fabs(v5 - v7); nvals2++; } if (!(v3 == v4 && v4 == v5 && v5 == v6 && v6 == v7) ) { differences3[nvals] = (float) fabs((2 * v5) - v3 - v7); differences5[nvals] = (float) fabs((6 * v5) - (4 * v3) - (4 * v7) + v1 + v9); nvals++; } else { /* ignore constant background regions */ ngoodpix++; } /* shift over 1 pixel */ v1 = v2; v2 = v3; v3 = v4; v4 = v5; v5 = v6; v6 = v7; v7 = v8; v8 = v9; } /* end of loop over pixels in the row */ /* compute the median diffs */ /* Note that there are 8 more pixel values than there are diffs values. */ ngoodpix += (nvals + 8); if (nvals == 0) { continue; /* cannot compute medians on this row */ } else if (nvals == 1) { if (nvals2 == 1) { diffs2[nrows2] = differences2[0]; nrows2++; } diffs3[nrows] = differences3[0]; diffs5[nrows] = differences5[0]; } else { /* quick_select returns the median MUCH faster than using qsort */ if (nvals2 > 1) { diffs2[nrows2] = quick_select_float(differences2, nvals); nrows2++; } diffs3[nrows] = quick_select_float(differences3, nvals); diffs5[nrows] = quick_select_float(differences5, nvals); } nrows++; } /* end of loop over rows */ /* compute median of the values for each row */ if (nrows == 0) { xnoise3 = 0; xnoise5 = 0; } else if (nrows == 1) { xnoise3 = diffs3[0]; xnoise5 = diffs5[0]; } else { qsort(diffs3, nrows, sizeof(double), FnCompare_double); qsort(diffs5, nrows, sizeof(double), FnCompare_double); xnoise3 = (diffs3[(nrows - 1)/2] + diffs3[nrows/2]) / 2.; xnoise5 = (diffs5[(nrows - 1)/2] + diffs5[nrows/2]) / 2.; } if (nrows2 == 0) { xnoise2 = 0; } else if (nrows2 == 1) { xnoise2 = diffs2[0]; } else { qsort(diffs2, nrows2, sizeof(double), FnCompare_double); xnoise2 = (diffs2[(nrows2 - 1)/2] + diffs2[nrows2/2]) / 2.; } if (ngood) *ngood = ngoodpix; if (minval) *minval = xminval; if (maxval) *maxval = xmaxval; if (noise2) *noise2 = 1.0483579 * xnoise2; if (noise3) *noise3 = 0.6052697 * xnoise3; if (noise5) *noise5 = 0.1772048 * xnoise5; free(diffs5); free(diffs3); free(diffs2); free(differences5); free(differences3); free(differences2); return(*status); } /*--------------------------------------------------------------------------*/ static int FnNoise5_double (double *array, /* 2 dimensional array of image pixels */ long nx, /* number of pixels in each row of the image */ long ny, /* number of rows in the image */ int nullcheck, /* check for null values, if true */ double nullvalue, /* value of null pixels, if nullcheck is true */ /* returned parameters */ long *ngood, /* number of good, non-null pixels? */ double *minval, /* minimum non-null value */ double *maxval, /* maximum non-null value */ double *noise2, /* returned 2nd order MAD of all non-null pixels */ double *noise3, /* returned 3rd order MAD of all non-null pixels */ double *noise5, /* returned 5th order MAD of all non-null pixels */ int *status) /* error status */ /* Estimate the median and background noise in the input image using 2nd, 3rd and 5th order Median Absolute Differences. The noise in the background of the image is calculated using the MAD algorithms developed for deriving the signal to noise ratio in spectra (see issue #42 of the ST-ECF newsletter, http://www.stecf.org/documents/newsletter/) 3rd order: noise = 1.482602 / sqrt(6) * median (abs(2*flux(i) - flux(i-2) - flux(i+2))) The returned estimates are the median of the values that are computed for each row of the image. */ { long ii, jj, nrows = 0, nrows2 = 0, nvals, nvals2, ngoodpix = 0; double *differences2, *differences3, *differences5; double *rowpix, v1, v2, v3, v4, v5, v6, v7, v8, v9; double xminval = DBL_MAX, xmaxval = -DBL_MAX; int do_range = 0; double *diffs2, *diffs3, *diffs5; double xnoise2 = 0, xnoise3 = 0, xnoise5 = 0; if (nx < 5) { /* treat entire array as an image with a single row */ nx = nx * ny; ny = 1; } /* rows must have at least 9 pixels */ if (nx < 9) { for (ii = 0; ii < nx; ii++) { if (nullcheck && array[ii] == nullvalue) continue; else { if (array[ii] < xminval) xminval = array[ii]; if (array[ii] > xmaxval) xmaxval = array[ii]; ngoodpix++; } } if (minval) *minval = xminval; if (maxval) *maxval = xmaxval; if (ngood) *ngood = ngoodpix; if (noise2) *noise2 = 0.; if (noise3) *noise3 = 0.; if (noise5) *noise5 = 0.; return(*status); } /* do we need to compute the min and max value? */ if (minval || maxval) do_range = 1; /* allocate arrays used to compute the median and noise estimates */ differences2 = calloc(nx, sizeof(double)); if (!differences2) { *status = MEMORY_ALLOCATION; return(*status); } differences3 = calloc(nx, sizeof(double)); if (!differences3) { free(differences2); *status = MEMORY_ALLOCATION; return(*status); } differences5 = calloc(nx, sizeof(double)); if (!differences5) { free(differences2); free(differences3); *status = MEMORY_ALLOCATION; return(*status); } diffs2 = calloc(ny, sizeof(double)); if (!diffs2) { free(differences2); free(differences3); free(differences5); *status = MEMORY_ALLOCATION; return(*status); } diffs3 = calloc(ny, sizeof(double)); if (!diffs3) { free(differences2); free(differences3); free(differences5); free(diffs2); *status = MEMORY_ALLOCATION; return(*status); } diffs5 = calloc(ny, sizeof(double)); if (!diffs5) { free(differences2); free(differences3); free(differences5); free(diffs2); free(diffs3); *status = MEMORY_ALLOCATION; return(*status); } /* loop over each row of the image */ for (jj=0; jj < ny; jj++) { rowpix = array + (jj * nx); /* point to first pixel in the row */ /***** find the first valid pixel in row */ ii = 0; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v1 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v1 < xminval) xminval = v1; if (v1 > xmaxval) xmaxval = v1; } /***** find the 2nd valid pixel in row (which we will skip over) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v2 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v2 < xminval) xminval = v2; if (v2 > xmaxval) xmaxval = v2; } /***** find the 3rd valid pixel in row */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v3 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v3 < xminval) xminval = v3; if (v3 > xmaxval) xmaxval = v3; } /* find the 4nd valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v4 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v4 < xminval) xminval = v4; if (v4 > xmaxval) xmaxval = v4; } /* find the 5th valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v5 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v5 < xminval) xminval = v5; if (v5 > xmaxval) xmaxval = v5; } /* find the 6th valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v6 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v6 < xminval) xminval = v6; if (v6 > xmaxval) xmaxval = v6; } /* find the 7th valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v7 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v7 < xminval) xminval = v7; if (v7 > xmaxval) xmaxval = v7; } /* find the 8th valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v8 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v8 < xminval) xminval = v8; if (v8 > xmaxval) xmaxval = v8; } /* now populate the differences arrays */ /* for the remaining pixels in the row */ nvals = 0; nvals2 = 0; for (ii++; ii < nx; ii++) { /* find the next valid pixel in row */ if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) break; /* hit end of row */ v9 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v9 < xminval) xminval = v9; if (v9 > xmaxval) xmaxval = v9; } /* construct array of absolute differences */ if (!(v5 == v6 && v6 == v7) ) { differences2[nvals2] = fabs(v5 - v7); nvals2++; } if (!(v3 == v4 && v4 == v5 && v5 == v6 && v6 == v7) ) { differences3[nvals] = fabs((2 * v5) - v3 - v7); differences5[nvals] = fabs((6 * v5) - (4 * v3) - (4 * v7) + v1 + v9); nvals++; } else { /* ignore constant background regions */ ngoodpix++; } /* shift over 1 pixel */ v1 = v2; v2 = v3; v3 = v4; v4 = v5; v5 = v6; v6 = v7; v7 = v8; v8 = v9; } /* end of loop over pixels in the row */ /* compute the median diffs */ /* Note that there are 8 more pixel values than there are diffs values. */ ngoodpix += (nvals + 8); if (nvals == 0) { continue; /* cannot compute medians on this row */ } else if (nvals == 1) { if (nvals2 == 1) { diffs2[nrows2] = differences2[0]; nrows2++; } diffs3[nrows] = differences3[0]; diffs5[nrows] = differences5[0]; } else { /* quick_select returns the median MUCH faster than using qsort */ if (nvals2 > 1) { diffs2[nrows2] = quick_select_double(differences2, nvals); nrows2++; } diffs3[nrows] = quick_select_double(differences3, nvals); diffs5[nrows] = quick_select_double(differences5, nvals); } nrows++; } /* end of loop over rows */ /* compute median of the values for each row */ if (nrows == 0) { xnoise3 = 0; xnoise5 = 0; } else if (nrows == 1) { xnoise3 = diffs3[0]; xnoise5 = diffs5[0]; } else { qsort(diffs3, nrows, sizeof(double), FnCompare_double); qsort(diffs5, nrows, sizeof(double), FnCompare_double); xnoise3 = (diffs3[(nrows - 1)/2] + diffs3[nrows/2]) / 2.; xnoise5 = (diffs5[(nrows - 1)/2] + diffs5[nrows/2]) / 2.; } if (nrows2 == 0) { xnoise2 = 0; } else if (nrows2 == 1) { xnoise2 = diffs2[0]; } else { qsort(diffs2, nrows2, sizeof(double), FnCompare_double); xnoise2 = (diffs2[(nrows2 - 1)/2] + diffs2[nrows2/2]) / 2.; } if (ngood) *ngood = ngoodpix; if (minval) *minval = xminval; if (maxval) *maxval = xmaxval; if (noise2) *noise2 = 1.0483579 * xnoise2; if (noise3) *noise3 = 0.6052697 * xnoise3; if (noise5) *noise5 = 0.1772048 * xnoise5; free(diffs5); free(diffs3); free(diffs2); free(differences5); free(differences3); free(differences2); return(*status); } /*--------------------------------------------------------------------------*/ static int FnNoise3_short (short *array, /* 2 dimensional array of image pixels */ long nx, /* number of pixels in each row of the image */ long ny, /* number of rows in the image */ int nullcheck, /* check for null values, if true */ short nullvalue, /* value of null pixels, if nullcheck is true */ /* returned parameters */ long *ngood, /* number of good, non-null pixels? */ short *minval, /* minimum non-null value */ short *maxval, /* maximum non-null value */ double *noise, /* returned R.M.S. value of all non-null pixels */ int *status) /* error status */ /* Estimate the median and background noise in the input image using 3rd order differences. The noise in the background of the image is calculated using the 3rd order algorithm developed for deriving the signal to noise ratio in spectra (see issue #42 of the ST-ECF newsletter, http://www.stecf.org/documents/newsletter/) noise = 1.482602 / sqrt(6) * median (abs(2*flux(i) - flux(i-2) - flux(i+2))) The returned estimates are the median of the values that are computed for each row of the image. */ { long ii, jj, nrows = 0, nvals, ngoodpix = 0; short *differences, *rowpix, v1, v2, v3, v4, v5; short xminval = SHRT_MAX, xmaxval = SHRT_MIN, do_range = 0; double *diffs, xnoise = 0, sigma; if (nx < 5) { /* treat entire array as an image with a single row */ nx = nx * ny; ny = 1; } /* rows must have at least 5 pixels */ if (nx < 5) { for (ii = 0; ii < nx; ii++) { if (nullcheck && array[ii] == nullvalue) continue; else { if (array[ii] < xminval) xminval = array[ii]; if (array[ii] > xmaxval) xmaxval = array[ii]; ngoodpix++; } } if (minval) *minval = xminval; if (maxval) *maxval = xmaxval; if (ngood) *ngood = ngoodpix; if (noise) *noise = 0.; return(*status); } /* do we need to compute the min and max value? */ if (minval || maxval) do_range = 1; /* allocate arrays used to compute the median and noise estimates */ differences = calloc(nx, sizeof(short)); if (!differences) { *status = MEMORY_ALLOCATION; return(*status); } diffs = calloc(ny, sizeof(double)); if (!diffs) { free(differences); *status = MEMORY_ALLOCATION; return(*status); } /* loop over each row of the image */ for (jj=0; jj < ny; jj++) { rowpix = array + (jj * nx); /* point to first pixel in the row */ /***** find the first valid pixel in row */ ii = 0; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v1 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v1 < xminval) xminval = v1; if (v1 > xmaxval) xmaxval = v1; } /***** find the 2nd valid pixel in row (which we will skip over) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v2 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v2 < xminval) xminval = v2; if (v2 > xmaxval) xmaxval = v2; } /***** find the 3rd valid pixel in row */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v3 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v3 < xminval) xminval = v3; if (v3 > xmaxval) xmaxval = v3; } /* find the 4nd valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v4 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v4 < xminval) xminval = v4; if (v4 > xmaxval) xmaxval = v4; } /* now populate the differences arrays */ /* for the remaining pixels in the row */ nvals = 0; for (ii++; ii < nx; ii++) { /* find the next valid pixel in row */ if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) break; /* hit end of row */ v5 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v5 < xminval) xminval = v5; if (v5 > xmaxval) xmaxval = v5; } /* construct array of 3rd order absolute differences */ if (!(v1 == v2 && v2 == v3 && v3 == v4 && v4 == v5)) { differences[nvals] = abs((2 * v3) - v1 - v5); nvals++; } else { /* ignore constant background regions */ ngoodpix++; } /* shift over 1 pixel */ v1 = v2; v2 = v3; v3 = v4; v4 = v5; } /* end of loop over pixels in the row */ /* compute the 3rd order diffs */ /* Note that there are 4 more pixel values than there are diffs values. */ ngoodpix += (nvals + 4); if (nvals == 0) { continue; /* cannot compute medians on this row */ } else if (nvals == 1) { diffs[nrows] = differences[0]; } else { /* quick_select returns the median MUCH faster than using qsort */ diffs[nrows] = quick_select_short(differences, nvals); } nrows++; } /* end of loop over rows */ /* compute median of the values for each row */ if (nrows == 0) { xnoise = 0; } else if (nrows == 1) { xnoise = diffs[0]; } else { qsort(diffs, nrows, sizeof(double), FnCompare_double); xnoise = (diffs[(nrows - 1)/2] + diffs[nrows/2]) / 2.; FnMeanSigma_double(diffs, nrows, 0, 0.0, 0, &xnoise, &sigma, status); /* do a 4.5 sigma rejection of outliers */ jj = 0; sigma = 4.5 * sigma; for (ii = 0; ii < nrows; ii++) { if ( fabs(diffs[ii] - xnoise) <= sigma) { if (jj != ii) diffs[jj] = diffs[ii]; jj++; } } if (ii != jj) FnMeanSigma_double(diffs, jj, 0, 0.0, 0, &xnoise, &sigma, status); } if (ngood) *ngood = ngoodpix; if (minval) *minval = xminval; if (maxval) *maxval = xmaxval; if (noise) *noise = 0.6052697 * xnoise; free(diffs); free(differences); return(*status); } /*--------------------------------------------------------------------------*/ static int FnNoise3_int (int *array, /* 2 dimensional array of image pixels */ long nx, /* number of pixels in each row of the image */ long ny, /* number of rows in the image */ int nullcheck, /* check for null values, if true */ int nullvalue, /* value of null pixels, if nullcheck is true */ /* returned parameters */ long *ngood, /* number of good, non-null pixels? */ int *minval, /* minimum non-null value */ int *maxval, /* maximum non-null value */ double *noise, /* returned R.M.S. value of all non-null pixels */ int *status) /* error status */ /* Estimate the background noise in the input image using 3rd order differences. The noise in the background of the image is calculated using the 3rd order algorithm developed for deriving the signal to noise ratio in spectra (see issue #42 of the ST-ECF newsletter, http://www.stecf.org/documents/newsletter/) noise = 1.482602 / sqrt(6) * median (abs(2*flux(i) - flux(i-2) - flux(i+2))) The returned estimates are the median of the values that are computed for each row of the image. */ { long ii, jj, nrows = 0, nvals, ngoodpix = 0; int *differences, *rowpix, v1, v2, v3, v4, v5; int xminval = INT_MAX, xmaxval = INT_MIN, do_range = 0; double *diffs, xnoise = 0, sigma; if (nx < 5) { /* treat entire array as an image with a single row */ nx = nx * ny; ny = 1; } /* rows must have at least 5 pixels */ if (nx < 5) { for (ii = 0; ii < nx; ii++) { if (nullcheck && array[ii] == nullvalue) continue; else { if (array[ii] < xminval) xminval = array[ii]; if (array[ii] > xmaxval) xmaxval = array[ii]; ngoodpix++; } } if (minval) *minval = xminval; if (maxval) *maxval = xmaxval; if (ngood) *ngood = ngoodpix; if (noise) *noise = 0.; return(*status); } /* do we need to compute the min and max value? */ if (minval || maxval) do_range = 1; /* allocate arrays used to compute the median and noise estimates */ differences = calloc(nx, sizeof(int)); if (!differences) { *status = MEMORY_ALLOCATION; return(*status); } diffs = calloc(ny, sizeof(double)); if (!diffs) { free(differences); *status = MEMORY_ALLOCATION; return(*status); } /* loop over each row of the image */ for (jj=0; jj < ny; jj++) { rowpix = array + (jj * nx); /* point to first pixel in the row */ /***** find the first valid pixel in row */ ii = 0; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v1 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v1 < xminval) xminval = v1; if (v1 > xmaxval) xmaxval = v1; } /***** find the 2nd valid pixel in row (which we will skip over) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v2 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v2 < xminval) xminval = v2; if (v2 > xmaxval) xmaxval = v2; } /***** find the 3rd valid pixel in row */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v3 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v3 < xminval) xminval = v3; if (v3 > xmaxval) xmaxval = v3; } /* find the 4nd valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v4 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v4 < xminval) xminval = v4; if (v4 > xmaxval) xmaxval = v4; } /* now populate the differences arrays */ /* for the remaining pixels in the row */ nvals = 0; for (ii++; ii < nx; ii++) { /* find the next valid pixel in row */ if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) break; /* hit end of row */ v5 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v5 < xminval) xminval = v5; if (v5 > xmaxval) xmaxval = v5; } /* construct array of 3rd order absolute differences */ if (!(v1 == v2 && v2 == v3 && v3 == v4 && v4 == v5)) { differences[nvals] = abs((2 * v3) - v1 - v5); nvals++; } else { /* ignore constant background regions */ ngoodpix++; } /* shift over 1 pixel */ v1 = v2; v2 = v3; v3 = v4; v4 = v5; } /* end of loop over pixels in the row */ /* compute the 3rd order diffs */ /* Note that there are 4 more pixel values than there are diffs values. */ ngoodpix += (nvals + 4); if (nvals == 0) { continue; /* cannot compute medians on this row */ } else if (nvals == 1) { diffs[nrows] = differences[0]; } else { /* quick_select returns the median MUCH faster than using qsort */ diffs[nrows] = quick_select_int(differences, nvals); } nrows++; } /* end of loop over rows */ /* compute median of the values for each row */ if (nrows == 0) { xnoise = 0; } else if (nrows == 1) { xnoise = diffs[0]; } else { qsort(diffs, nrows, sizeof(double), FnCompare_double); xnoise = (diffs[(nrows - 1)/2] + diffs[nrows/2]) / 2.; FnMeanSigma_double(diffs, nrows, 0, 0.0, 0, &xnoise, &sigma, status); /* do a 4.5 sigma rejection of outliers */ jj = 0; sigma = 4.5 * sigma; for (ii = 0; ii < nrows; ii++) { if ( fabs(diffs[ii] - xnoise) <= sigma) { if (jj != ii) diffs[jj] = diffs[ii]; jj++; } } if (ii != jj) FnMeanSigma_double(diffs, jj, 0, 0.0, 0, &xnoise, &sigma, status); } if (ngood) *ngood = ngoodpix; if (minval) *minval = xminval; if (maxval) *maxval = xmaxval; if (noise) *noise = 0.6052697 * xnoise; free(diffs); free(differences); return(*status); } /*--------------------------------------------------------------------------*/ static int FnNoise3_float (float *array, /* 2 dimensional array of image pixels */ long nx, /* number of pixels in each row of the image */ long ny, /* number of rows in the image */ int nullcheck, /* check for null values, if true */ float nullvalue, /* value of null pixels, if nullcheck is true */ /* returned parameters */ long *ngood, /* number of good, non-null pixels? */ float *minval, /* minimum non-null value */ float *maxval, /* maximum non-null value */ double *noise, /* returned R.M.S. value of all non-null pixels */ int *status) /* error status */ /* Estimate the median and background noise in the input image using 3rd order differences. The noise in the background of the image is calculated using the 3rd order algorithm developed for deriving the signal to noise ratio in spectra (see issue #42 of the ST-ECF newsletter, http://www.stecf.org/documents/newsletter/) noise = 1.482602 / sqrt(6) * median (abs(2*flux(i) - flux(i-2) - flux(i+2))) The returned estimates are the median of the values that are computed for each row of the image. */ { long ii, jj, nrows = 0, nvals, ngoodpix = 0; float *differences, *rowpix, v1, v2, v3, v4, v5; float xminval = FLT_MAX, xmaxval = -FLT_MAX; int do_range = 0; double *diffs, xnoise = 0; if (nx < 5) { /* treat entire array as an image with a single row */ nx = nx * ny; ny = 1; } /* rows must have at least 5 pixels to calc noise, so just calc min, max, ngood */ if (nx < 5) { for (ii = 0; ii < nx; ii++) { if (nullcheck && array[ii] == nullvalue) continue; else { if (array[ii] < xminval) xminval = array[ii]; if (array[ii] > xmaxval) xmaxval = array[ii]; ngoodpix++; } } if (minval) *minval = xminval; if (maxval) *maxval = xmaxval; if (ngood) *ngood = ngoodpix; if (noise) *noise = 0.; return(*status); } /* do we need to compute the min and max value? */ if (minval || maxval) do_range = 1; /* allocate arrays used to compute the median and noise estimates */ if (noise) { differences = calloc(nx, sizeof(float)); if (!differences) { *status = MEMORY_ALLOCATION; return(*status); } diffs = calloc(ny, sizeof(double)); if (!diffs) { free(differences); *status = MEMORY_ALLOCATION; return(*status); } } /* loop over each row of the image */ for (jj=0; jj < ny; jj++) { rowpix = array + (jj * nx); /* point to first pixel in the row */ /***** find the first valid pixel in row */ ii = 0; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v1 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v1 < xminval) xminval = v1; if (v1 > xmaxval) xmaxval = v1; } /***** find the 2nd valid pixel in row (which we will skip over) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v2 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v2 < xminval) xminval = v2; if (v2 > xmaxval) xmaxval = v2; } /***** find the 3rd valid pixel in row */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v3 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v3 < xminval) xminval = v3; if (v3 > xmaxval) xmaxval = v3; } /* find the 4nd valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v4 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v4 < xminval) xminval = v4; if (v4 > xmaxval) xmaxval = v4; } /* now populate the differences arrays */ /* for the remaining pixels in the row */ nvals = 0; for (ii++; ii < nx; ii++) { /* find the next valid pixel in row */ if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) { ii++; } if (ii == nx) break; /* hit end of row */ v5 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v5 < xminval) xminval = v5; if (v5 > xmaxval) xmaxval = v5; } /* construct array of 3rd order absolute differences */ if (noise) { if (!(v1 == v2 && v2 == v3 && v3 == v4 && v4 == v5)) { differences[nvals] = (float) fabs((2. * v3) - v1 - v5); nvals++; } else { /* ignore constant background regions */ ngoodpix++; } } else { /* just increment the number of non-null pixels */ ngoodpix++; } /* shift over 1 pixel */ v1 = v2; v2 = v3; v3 = v4; v4 = v5; } /* end of loop over pixels in the row */ /* compute the 3rd order diffs */ /* Note that there are 4 more pixel values than there are diffs values. */ ngoodpix += (nvals + 4); if (noise) { if (nvals == 0) { continue; /* cannot compute medians on this row */ } else if (nvals == 1) { diffs[nrows] = differences[0]; } else { /* quick_select returns the median MUCH faster than using qsort */ diffs[nrows] = quick_select_float(differences, nvals); } } nrows++; } /* end of loop over rows */ /* compute median of the values for each row */ if (noise) { if (nrows == 0) { xnoise = 0; } else if (nrows == 1) { xnoise = diffs[0]; } else { qsort(diffs, nrows, sizeof(double), FnCompare_double); xnoise = (diffs[(nrows - 1)/2] + diffs[nrows/2]) / 2.; } } if (ngood) *ngood = ngoodpix; if (minval) *minval = xminval; if (maxval) *maxval = xmaxval; if (noise) { *noise = 0.6052697 * xnoise; free(diffs); free(differences); } return(*status); } /*--------------------------------------------------------------------------*/ static int FnNoise3_double (double *array, /* 2 dimensional array of image pixels */ long nx, /* number of pixels in each row of the image */ long ny, /* number of rows in the image */ int nullcheck, /* check for null values, if true */ double nullvalue, /* value of null pixels, if nullcheck is true */ /* returned parameters */ long *ngood, /* number of good, non-null pixels? */ double *minval, /* minimum non-null value */ double *maxval, /* maximum non-null value */ double *noise, /* returned R.M.S. value of all non-null pixels */ int *status) /* error status */ /* Estimate the median and background noise in the input image using 3rd order differences. The noise in the background of the image is calculated using the 3rd order algorithm developed for deriving the signal to noise ratio in spectra (see issue #42 of the ST-ECF newsletter, http://www.stecf.org/documents/newsletter/) noise = 1.482602 / sqrt(6) * median (abs(2*flux(i) - flux(i-2) - flux(i+2))) The returned estimates are the median of the values that are computed for each row of the image. */ { long ii, jj, nrows = 0, nvals, ngoodpix = 0; double *differences, *rowpix, v1, v2, v3, v4, v5; double xminval = DBL_MAX, xmaxval = -DBL_MAX; int do_range = 0; double *diffs, xnoise = 0; if (nx < 5) { /* treat entire array as an image with a single row */ nx = nx * ny; ny = 1; } /* rows must have at least 5 pixels */ if (nx < 5) { for (ii = 0; ii < nx; ii++) { if (nullcheck && array[ii] == nullvalue) continue; else { if (array[ii] < xminval) xminval = array[ii]; if (array[ii] > xmaxval) xmaxval = array[ii]; ngoodpix++; } } if (minval) *minval = xminval; if (maxval) *maxval = xmaxval; if (ngood) *ngood = ngoodpix; if (noise) *noise = 0.; return(*status); } /* do we need to compute the min and max value? */ if (minval || maxval) do_range = 1; /* allocate arrays used to compute the median and noise estimates */ if (noise) { differences = calloc(nx, sizeof(double)); if (!differences) { *status = MEMORY_ALLOCATION; return(*status); } diffs = calloc(ny, sizeof(double)); if (!diffs) { free(differences); *status = MEMORY_ALLOCATION; return(*status); } } /* loop over each row of the image */ for (jj=0; jj < ny; jj++) { rowpix = array + (jj * nx); /* point to first pixel in the row */ /***** find the first valid pixel in row */ ii = 0; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v1 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v1 < xminval) xminval = v1; if (v1 > xmaxval) xmaxval = v1; } /***** find the 2nd valid pixel in row (which we will skip over) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v2 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v2 < xminval) xminval = v2; if (v2 > xmaxval) xmaxval = v2; } /***** find the 3rd valid pixel in row */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v3 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v3 < xminval) xminval = v3; if (v3 > xmaxval) xmaxval = v3; } /* find the 4nd valid pixel in row (to be skipped) */ ii++; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v4 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v4 < xminval) xminval = v4; if (v4 > xmaxval) xmaxval = v4; } /* now populate the differences arrays */ /* for the remaining pixels in the row */ nvals = 0; for (ii++; ii < nx; ii++) { /* find the next valid pixel in row */ if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) break; /* hit end of row */ v5 = rowpix[ii]; /* store the good pixel value */ if (do_range) { if (v5 < xminval) xminval = v5; if (v5 > xmaxval) xmaxval = v5; } /* construct array of 3rd order absolute differences */ if (noise) { if (!(v1 == v2 && v2 == v3 && v3 == v4 && v4 == v5)) { differences[nvals] = fabs((2. * v3) - v1 - v5); nvals++; } else { /* ignore constant background regions */ ngoodpix++; } } else { /* just increment the number of non-null pixels */ ngoodpix++; } /* shift over 1 pixel */ v1 = v2; v2 = v3; v3 = v4; v4 = v5; } /* end of loop over pixels in the row */ /* compute the 3rd order diffs */ /* Note that there are 4 more pixel values than there are diffs values. */ ngoodpix += (nvals + 4); if (noise) { if (nvals == 0) { continue; /* cannot compute medians on this row */ } else if (nvals == 1) { diffs[nrows] = differences[0]; } else { /* quick_select returns the median MUCH faster than using qsort */ diffs[nrows] = quick_select_double(differences, nvals); } } nrows++; } /* end of loop over rows */ /* compute median of the values for each row */ if (noise) { if (nrows == 0) { xnoise = 0; } else if (nrows == 1) { xnoise = diffs[0]; } else { qsort(diffs, nrows, sizeof(double), FnCompare_double); xnoise = (diffs[(nrows - 1)/2] + diffs[nrows/2]) / 2.; } } if (ngood) *ngood = ngoodpix; if (minval) *minval = xminval; if (maxval) *maxval = xmaxval; if (noise) { *noise = 0.6052697 * xnoise; free(diffs); free(differences); } return(*status); } /*--------------------------------------------------------------------------*/ static int FnNoise1_short (short *array, /* 2 dimensional array of image pixels */ long nx, /* number of pixels in each row of the image */ long ny, /* number of rows in the image */ int nullcheck, /* check for null values, if true */ short nullvalue, /* value of null pixels, if nullcheck is true */ /* returned parameters */ double *noise, /* returned R.M.S. value of all non-null pixels */ int *status) /* error status */ /* Estimate the background noise in the input image using sigma of 1st order differences. noise = 1.0 / sqrt(2) * rms of (flux[i] - flux[i-1]) The returned estimate is the median of the values that are computed for each row of the image. */ { int iter; long ii, jj, kk, nrows = 0, nvals; short *differences, *rowpix, v1; double *diffs, xnoise, mean, stdev; /* rows must have at least 3 pixels to estimate noise */ if (nx < 3) { *noise = 0; return(*status); } /* allocate arrays used to compute the median and noise estimates */ differences = calloc(nx, sizeof(short)); if (!differences) { *status = MEMORY_ALLOCATION; return(*status); } diffs = calloc(ny, sizeof(double)); if (!diffs) { free(differences); *status = MEMORY_ALLOCATION; return(*status); } /* loop over each row of the image */ for (jj=0; jj < ny; jj++) { rowpix = array + (jj * nx); /* point to first pixel in the row */ /***** find the first valid pixel in row */ ii = 0; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v1 = rowpix[ii]; /* store the good pixel value */ /* now continue populating the differences arrays */ /* for the remaining pixels in the row */ nvals = 0; for (ii++; ii < nx; ii++) { /* find the next valid pixel in row */ if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) break; /* hit end of row */ /* construct array of 1st order differences */ differences[nvals] = v1 - rowpix[ii]; nvals++; /* shift over 1 pixel */ v1 = rowpix[ii]; } /* end of loop over pixels in the row */ if (nvals < 2) continue; else { FnMeanSigma_short(differences, nvals, 0, 0, 0, &mean, &stdev, status); if (stdev > 0.) { for (iter = 0; iter < NITER; iter++) { kk = 0; for (ii = 0; ii < nvals; ii++) { if (fabs (differences[ii] - mean) < SIGMA_CLIP * stdev) { if (kk < ii) differences[kk] = differences[ii]; kk++; } } if (kk == nvals) break; nvals = kk; FnMeanSigma_short(differences, nvals, 0, 0, 0, &mean, &stdev, status); } } diffs[nrows] = stdev; nrows++; } } /* end of loop over rows */ /* compute median of the values for each row */ if (nrows == 0) { xnoise = 0; } else if (nrows == 1) { xnoise = diffs[0]; } else { qsort(diffs, nrows, sizeof(double), FnCompare_double); xnoise = (diffs[(nrows - 1)/2] + diffs[nrows/2]) / 2.; } *noise = .70710678 * xnoise; free(diffs); free(differences); return(*status); } /*--------------------------------------------------------------------------*/ static int FnNoise1_int (int *array, /* 2 dimensional array of image pixels */ long nx, /* number of pixels in each row of the image */ long ny, /* number of rows in the image */ int nullcheck, /* check for null values, if true */ int nullvalue, /* value of null pixels, if nullcheck is true */ /* returned parameters */ double *noise, /* returned R.M.S. value of all non-null pixels */ int *status) /* error status */ /* Estimate the background noise in the input image using sigma of 1st order differences. noise = 1.0 / sqrt(2) * rms of (flux[i] - flux[i-1]) The returned estimate is the median of the values that are computed for each row of the image. */ { int iter; long ii, jj, kk, nrows = 0, nvals; int *differences, *rowpix, v1; double *diffs, xnoise, mean, stdev; /* rows must have at least 3 pixels to estimate noise */ if (nx < 3) { *noise = 0; return(*status); } /* allocate arrays used to compute the median and noise estimates */ differences = calloc(nx, sizeof(int)); if (!differences) { *status = MEMORY_ALLOCATION; return(*status); } diffs = calloc(ny, sizeof(double)); if (!diffs) { free(differences); *status = MEMORY_ALLOCATION; return(*status); } /* loop over each row of the image */ for (jj=0; jj < ny; jj++) { rowpix = array + (jj * nx); /* point to first pixel in the row */ /***** find the first valid pixel in row */ ii = 0; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v1 = rowpix[ii]; /* store the good pixel value */ /* now continue populating the differences arrays */ /* for the remaining pixels in the row */ nvals = 0; for (ii++; ii < nx; ii++) { /* find the next valid pixel in row */ if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) break; /* hit end of row */ /* construct array of 1st order differences */ differences[nvals] = v1 - rowpix[ii]; nvals++; /* shift over 1 pixel */ v1 = rowpix[ii]; } /* end of loop over pixels in the row */ if (nvals < 2) continue; else { FnMeanSigma_int(differences, nvals, 0, 0, 0, &mean, &stdev, status); if (stdev > 0.) { for (iter = 0; iter < NITER; iter++) { kk = 0; for (ii = 0; ii < nvals; ii++) { if (fabs (differences[ii] - mean) < SIGMA_CLIP * stdev) { if (kk < ii) differences[kk] = differences[ii]; kk++; } } if (kk == nvals) break; nvals = kk; FnMeanSigma_int(differences, nvals, 0, 0, 0, &mean, &stdev, status); } } diffs[nrows] = stdev; nrows++; } } /* end of loop over rows */ /* compute median of the values for each row */ if (nrows == 0) { xnoise = 0; } else if (nrows == 1) { xnoise = diffs[0]; } else { qsort(diffs, nrows, sizeof(double), FnCompare_double); xnoise = (diffs[(nrows - 1)/2] + diffs[nrows/2]) / 2.; } *noise = .70710678 * xnoise; free(diffs); free(differences); return(*status); } /*--------------------------------------------------------------------------*/ static int FnNoise1_float (float *array, /* 2 dimensional array of image pixels */ long nx, /* number of pixels in each row of the image */ long ny, /* number of rows in the image */ int nullcheck, /* check for null values, if true */ float nullvalue, /* value of null pixels, if nullcheck is true */ /* returned parameters */ double *noise, /* returned R.M.S. value of all non-null pixels */ int *status) /* error status */ /* Estimate the background noise in the input image using sigma of 1st order differences. noise = 1.0 / sqrt(2) * rms of (flux[i] - flux[i-1]) The returned estimate is the median of the values that are computed for each row of the image. */ { int iter; long ii, jj, kk, nrows = 0, nvals; float *differences, *rowpix, v1; double *diffs, xnoise, mean, stdev; /* rows must have at least 3 pixels to estimate noise */ if (nx < 3) { *noise = 0; return(*status); } /* allocate arrays used to compute the median and noise estimates */ differences = calloc(nx, sizeof(float)); if (!differences) { *status = MEMORY_ALLOCATION; return(*status); } diffs = calloc(ny, sizeof(double)); if (!diffs) { free(differences); *status = MEMORY_ALLOCATION; return(*status); } /* loop over each row of the image */ for (jj=0; jj < ny; jj++) { rowpix = array + (jj * nx); /* point to first pixel in the row */ /***** find the first valid pixel in row */ ii = 0; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v1 = rowpix[ii]; /* store the good pixel value */ /* now continue populating the differences arrays */ /* for the remaining pixels in the row */ nvals = 0; for (ii++; ii < nx; ii++) { /* find the next valid pixel in row */ if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) break; /* hit end of row */ /* construct array of 1st order differences */ differences[nvals] = v1 - rowpix[ii]; nvals++; /* shift over 1 pixel */ v1 = rowpix[ii]; } /* end of loop over pixels in the row */ if (nvals < 2) continue; else { FnMeanSigma_float(differences, nvals, 0, 0, 0, &mean, &stdev, status); if (stdev > 0.) { for (iter = 0; iter < NITER; iter++) { kk = 0; for (ii = 0; ii < nvals; ii++) { if (fabs (differences[ii] - mean) < SIGMA_CLIP * stdev) { if (kk < ii) differences[kk] = differences[ii]; kk++; } } if (kk == nvals) break; nvals = kk; FnMeanSigma_float(differences, nvals, 0, 0, 0, &mean, &stdev, status); } } diffs[nrows] = stdev; nrows++; } } /* end of loop over rows */ /* compute median of the values for each row */ if (nrows == 0) { xnoise = 0; } else if (nrows == 1) { xnoise = diffs[0]; } else { qsort(diffs, nrows, sizeof(double), FnCompare_double); xnoise = (diffs[(nrows - 1)/2] + diffs[nrows/2]) / 2.; } *noise = .70710678 * xnoise; free(diffs); free(differences); return(*status); } /*--------------------------------------------------------------------------*/ static int FnNoise1_double (double *array, /* 2 dimensional array of image pixels */ long nx, /* number of pixels in each row of the image */ long ny, /* number of rows in the image */ int nullcheck, /* check for null values, if true */ double nullvalue, /* value of null pixels, if nullcheck is true */ /* returned parameters */ double *noise, /* returned R.M.S. value of all non-null pixels */ int *status) /* error status */ /* Estimate the background noise in the input image using sigma of 1st order differences. noise = 1.0 / sqrt(2) * rms of (flux[i] - flux[i-1]) The returned estimate is the median of the values that are computed for each row of the image. */ { int iter; long ii, jj, kk, nrows = 0, nvals; double *differences, *rowpix, v1; double *diffs, xnoise, mean, stdev; /* rows must have at least 3 pixels to estimate noise */ if (nx < 3) { *noise = 0; return(*status); } /* allocate arrays used to compute the median and noise estimates */ differences = calloc(nx, sizeof(double)); if (!differences) { *status = MEMORY_ALLOCATION; return(*status); } diffs = calloc(ny, sizeof(double)); if (!diffs) { free(differences); *status = MEMORY_ALLOCATION; return(*status); } /* loop over each row of the image */ for (jj=0; jj < ny; jj++) { rowpix = array + (jj * nx); /* point to first pixel in the row */ /***** find the first valid pixel in row */ ii = 0; if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) continue; /* hit end of row */ v1 = rowpix[ii]; /* store the good pixel value */ /* now continue populating the differences arrays */ /* for the remaining pixels in the row */ nvals = 0; for (ii++; ii < nx; ii++) { /* find the next valid pixel in row */ if (nullcheck) while (ii < nx && rowpix[ii] == nullvalue) ii++; if (ii == nx) break; /* hit end of row */ /* construct array of 1st order differences */ differences[nvals] = v1 - rowpix[ii]; nvals++; /* shift over 1 pixel */ v1 = rowpix[ii]; } /* end of loop over pixels in the row */ if (nvals < 2) continue; else { FnMeanSigma_double(differences, nvals, 0, 0, 0, &mean, &stdev, status); if (stdev > 0.) { for (iter = 0; iter < NITER; iter++) { kk = 0; for (ii = 0; ii < nvals; ii++) { if (fabs (differences[ii] - mean) < SIGMA_CLIP * stdev) { if (kk < ii) differences[kk] = differences[ii]; kk++; } } if (kk == nvals) break; nvals = kk; FnMeanSigma_double(differences, nvals, 0, 0, 0, &mean, &stdev, status); } } diffs[nrows] = stdev; nrows++; } } /* end of loop over rows */ /* compute median of the values for each row */ if (nrows == 0) { xnoise = 0; } else if (nrows == 1) { xnoise = diffs[0]; } else { qsort(diffs, nrows, sizeof(double), FnCompare_double); xnoise = (diffs[(nrows - 1)/2] + diffs[nrows/2]) / 2.; } *noise = .70710678 * xnoise; free(diffs); free(differences); return(*status); } /*--------------------------------------------------------------------------*/ static int FnCompare_short(const void *v1, const void *v2) { const short *i1 = v1; const short *i2 = v2; if (*i1 < *i2) return(-1); else if (*i1 > *i2) return(1); else return(0); } /*--------------------------------------------------------------------------*/ static int FnCompare_int(const void *v1, const void *v2) { const int *i1 = v1; const int *i2 = v2; if (*i1 < *i2) return(-1); else if (*i1 > *i2) return(1); else return(0); } /*--------------------------------------------------------------------------*/ static int FnCompare_float(const void *v1, const void *v2) { const float *i1 = v1; const float *i2 = v2; if (*i1 < *i2) return(-1); else if (*i1 > *i2) return(1); else return(0); } /*--------------------------------------------------------------------------*/ static int FnCompare_double(const void *v1, const void *v2) { const double *i1 = v1; const double *i2 = v2; if (*i1 < *i2) return(-1); else if (*i1 > *i2) return(1); else return(0); } /*--------------------------------------------------------------------------*/ /* * These Quickselect routines are based on the algorithm described in * "Numerical recipes in C", Second Edition, * Cambridge University Press, 1992, Section 8.5, ISBN 0-521-43108-5 * This code by Nicolas Devillard - 1998. Public domain. */ /*--------------------------------------------------------------------------*/ #define ELEM_SWAP(a,b) { register float t=(a);(a)=(b);(b)=t; } static float quick_select_float(float arr[], int n) { int low, high ; int median; int middle, ll, hh; low = 0 ; high = n-1 ; median = (low + high) / 2; for (;;) { if (high <= low) /* One element only */ return arr[median] ; if (high == low + 1) { /* Two elements only */ if (arr[low] > arr[high]) ELEM_SWAP(arr[low], arr[high]) ; return arr[median] ; } /* Find median of low, middle and high items; swap into position low */ middle = (low + high) / 2; if (arr[middle] > arr[high]) ELEM_SWAP(arr[middle], arr[high]) ; if (arr[low] > arr[high]) ELEM_SWAP(arr[low], arr[high]) ; if (arr[middle] > arr[low]) ELEM_SWAP(arr[middle], arr[low]) ; /* Swap low item (now in position middle) into position (low+1) */ ELEM_SWAP(arr[middle], arr[low+1]) ; /* Nibble from each end towards middle, swapping items when stuck */ ll = low + 1; hh = high; for (;;) { do ll++; while (arr[low] > arr[ll]) ; do hh--; while (arr[hh] > arr[low]) ; if (hh < ll) break; ELEM_SWAP(arr[ll], arr[hh]) ; } /* Swap middle item (in position low) back into correct position */ ELEM_SWAP(arr[low], arr[hh]) ; /* Re-set active partition */ if (hh <= median) low = ll; if (hh >= median) high = hh - 1; } } #undef ELEM_SWAP /*--------------------------------------------------------------------------*/ #define ELEM_SWAP(a,b) { register short t=(a);(a)=(b);(b)=t; } static short quick_select_short(short arr[], int n) { int low, high ; int median; int middle, ll, hh; low = 0 ; high = n-1 ; median = (low + high) / 2; for (;;) { if (high <= low) /* One element only */ return arr[median] ; if (high == low + 1) { /* Two elements only */ if (arr[low] > arr[high]) ELEM_SWAP(arr[low], arr[high]) ; return arr[median] ; } /* Find median of low, middle and high items; swap into position low */ middle = (low + high) / 2; if (arr[middle] > arr[high]) ELEM_SWAP(arr[middle], arr[high]) ; if (arr[low] > arr[high]) ELEM_SWAP(arr[low], arr[high]) ; if (arr[middle] > arr[low]) ELEM_SWAP(arr[middle], arr[low]) ; /* Swap low item (now in position middle) into position (low+1) */ ELEM_SWAP(arr[middle], arr[low+1]) ; /* Nibble from each end towards middle, swapping items when stuck */ ll = low + 1; hh = high; for (;;) { do ll++; while (arr[low] > arr[ll]) ; do hh--; while (arr[hh] > arr[low]) ; if (hh < ll) break; ELEM_SWAP(arr[ll], arr[hh]) ; } /* Swap middle item (in position low) back into correct position */ ELEM_SWAP(arr[low], arr[hh]) ; /* Re-set active partition */ if (hh <= median) low = ll; if (hh >= median) high = hh - 1; } } #undef ELEM_SWAP /*--------------------------------------------------------------------------*/ #define ELEM_SWAP(a,b) { register int t=(a);(a)=(b);(b)=t; } static int quick_select_int(int arr[], int n) { int low, high ; int median; int middle, ll, hh; low = 0 ; high = n-1 ; median = (low + high) / 2; for (;;) { if (high <= low) /* One element only */ return arr[median] ; if (high == low + 1) { /* Two elements only */ if (arr[low] > arr[high]) ELEM_SWAP(arr[low], arr[high]) ; return arr[median] ; } /* Find median of low, middle and high items; swap into position low */ middle = (low + high) / 2; if (arr[middle] > arr[high]) ELEM_SWAP(arr[middle], arr[high]) ; if (arr[low] > arr[high]) ELEM_SWAP(arr[low], arr[high]) ; if (arr[middle] > arr[low]) ELEM_SWAP(arr[middle], arr[low]) ; /* Swap low item (now in position middle) into position (low+1) */ ELEM_SWAP(arr[middle], arr[low+1]) ; /* Nibble from each end towards middle, swapping items when stuck */ ll = low + 1; hh = high; for (;;) { do ll++; while (arr[low] > arr[ll]) ; do hh--; while (arr[hh] > arr[low]) ; if (hh < ll) break; ELEM_SWAP(arr[ll], arr[hh]) ; } /* Swap middle item (in position low) back into correct position */ ELEM_SWAP(arr[low], arr[hh]) ; /* Re-set active partition */ if (hh <= median) low = ll; if (hh >= median) high = hh - 1; } } #undef ELEM_SWAP /*--------------------------------------------------------------------------*/ #define ELEM_SWAP(a,b) { register LONGLONG t=(a);(a)=(b);(b)=t; } static LONGLONG quick_select_longlong(LONGLONG arr[], int n) { int low, high ; int median; int middle, ll, hh; low = 0 ; high = n-1 ; median = (low + high) / 2; for (;;) { if (high <= low) /* One element only */ return arr[median] ; if (high == low + 1) { /* Two elements only */ if (arr[low] > arr[high]) ELEM_SWAP(arr[low], arr[high]) ; return arr[median] ; } /* Find median of low, middle and high items; swap into position low */ middle = (low + high) / 2; if (arr[middle] > arr[high]) ELEM_SWAP(arr[middle], arr[high]) ; if (arr[low] > arr[high]) ELEM_SWAP(arr[low], arr[high]) ; if (arr[middle] > arr[low]) ELEM_SWAP(arr[middle], arr[low]) ; /* Swap low item (now in position middle) into position (low+1) */ ELEM_SWAP(arr[middle], arr[low+1]) ; /* Nibble from each end towards middle, swapping items when stuck */ ll = low + 1; hh = high; for (;;) { do ll++; while (arr[low] > arr[ll]) ; do hh--; while (arr[hh] > arr[low]) ; if (hh < ll) break; ELEM_SWAP(arr[ll], arr[hh]) ; } /* Swap middle item (in position low) back into correct position */ ELEM_SWAP(arr[low], arr[hh]) ; /* Re-set active partition */ if (hh <= median) low = ll; if (hh >= median) high = hh - 1; } } #undef ELEM_SWAP /*--------------------------------------------------------------------------*/ #define ELEM_SWAP(a,b) { register double t=(a);(a)=(b);(b)=t; } static double quick_select_double(double arr[], int n) { int low, high ; int median; int middle, ll, hh; low = 0 ; high = n-1 ; median = (low + high) / 2; for (;;) { if (high <= low) /* One element only */ return arr[median] ; if (high == low + 1) { /* Two elements only */ if (arr[low] > arr[high]) ELEM_SWAP(arr[low], arr[high]) ; return arr[median] ; } /* Find median of low, middle and high items; swap into position low */ middle = (low + high) / 2; if (arr[middle] > arr[high]) ELEM_SWAP(arr[middle], arr[high]) ; if (arr[low] > arr[high]) ELEM_SWAP(arr[low], arr[high]) ; if (arr[middle] > arr[low]) ELEM_SWAP(arr[middle], arr[low]) ; /* Swap low item (now in position middle) into position (low+1) */ ELEM_SWAP(arr[middle], arr[low+1]) ; /* Nibble from each end towards middle, swapping items when stuck */ ll = low + 1; hh = high; for (;;) { do ll++; while (arr[low] > arr[ll]) ; do hh--; while (arr[hh] > arr[low]) ; if (hh < ll) break; ELEM_SWAP(arr[ll], arr[hh]) ; } /* Swap middle item (in position low) back into correct position */ ELEM_SWAP(arr[low], arr[hh]) ; /* Re-set active partition */ if (hh <= median) low = ll; if (hh >= median) high = hh - 1; } } #undef ELEM_SWAP healpy-1.8.1/cfitsio/getcold.c0000654000175000017530000020333412272000775016647 0ustar zoncaplanck00000000000000/* This file, getcold.c, contains routines that read data elements from */ /* a FITS image or table, with double datatype. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffgpvd( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ double nulval, /* I - value for undefined pixels */ double *array, /* O - array of values that are returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Undefined elements will be set equal to NULVAL, unless NULVAL=0 in which case no checking for undefined values will be performed. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { long row; char cdummy; int nullcheck = 1; double nullvalue; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ nullvalue = nulval; /* set local variable */ fits_read_compressed_pixels(fptr, TDOUBLE, firstelem, nelem, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgcld(fptr, 2, row, firstelem, nelem, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgpfd( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ double *array, /* O - array of values that are returned */ char *nularray, /* O - array of null pixel flags */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any undefined pixels in the returned array will be set = 0 and the corresponding nularray value will be set = 1. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { long row; int nullcheck = 2; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_read_compressed_pixels(fptr, TDOUBLE, firstelem, nelem, nullcheck, NULL, array, nularray, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgcld(fptr, 2, row, firstelem, nelem, 1, 2, 0., array, nularray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffg2dd(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ double nulval, /* set undefined pixels equal to this */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ double *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an entire 2-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any null values in the array will be set equal to the value of nulval, unless nulval = 0 in which case no null checking will be performed. */ { /* call the 3D reading routine, with the 3rd dimension = 1 */ ffg3dd(fptr, group, nulval, ncols, naxis2, naxis1, naxis2, 1, array, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffg3dd(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ double nulval, /* set undefined pixels equal to this */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG nrows, /* I - number of rows in each plane of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ LONGLONG naxis3, /* I - FITS image NAXIS3 value */ double *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an entire 3-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any null values in the array will be set equal to the value of nulval, unless nulval = 0 in which case no null checking will be performed. */ { LONGLONG nfits, narray; long tablerow, ii, jj; char cdummy; int nullcheck = 1; long inc[] = {1,1,1}; LONGLONG fpixel[] = {1,1,1}; LONGLONG lpixel[3]; double nullvalue; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ lpixel[0] = (long) ncols; lpixel[1] = (long) nrows; lpixel[2] = (long) naxis3; nullvalue = nulval; /* set local variable */ fits_read_compressed_img(fptr, TDOUBLE, fpixel, lpixel, inc, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ tablerow=maxvalue(1,group); if (ncols == naxis1 && nrows == naxis2) /* arrays have same size? */ { /* all the image pixels are contiguous, so read all at once */ ffgcld(fptr, 2, tablerow, 1, naxis1 * naxis2 * naxis3, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } if (ncols < naxis1 || nrows < naxis2) return(*status = BAD_DIMEN); nfits = 1; /* next pixel in FITS image to read */ narray = 0; /* next pixel in output array to be filled */ /* loop over naxis3 planes in the data cube */ for (jj = 0; jj < naxis3; jj++) { /* loop over the naxis2 rows in the FITS image, */ /* reading naxis1 pixels to each row */ for (ii = 0; ii < naxis2; ii++) { if (ffgcld(fptr, 2, tablerow, nfits, naxis1, 1, 1, nulval, &array[narray], &cdummy, anynul, status) > 0) return(*status); nfits += naxis1; narray += ncols; } narray += (nrows - naxis2) * ncols; } return(*status); } /*--------------------------------------------------------------------------*/ int ffgsvd(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of the column to read (1 = 1st) */ int naxis, /* I - number of dimensions in the FITS array */ long *naxes, /* I - size of each dimension */ long *blc, /* I - 'bottom left corner' of the subsection */ long *trc, /* I - 'top right corner' of the subsection */ long *inc, /* I - increment to be applied in each dimension */ double nulval, /* I - value to set undefined pixels */ double *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read a subsection of data values from an image or a table column. This routine is set up to handle a maximum of nine dimensions. */ { long ii,i0, i1,i2,i3,i4,i5,i6,i7,i8,row,rstr,rstp,rinc; long str[9],stp[9],incr[9],dir[9]; long nelem, nultyp, ninc, numcol; LONGLONG felem, dsize[10], blcll[9], trcll[9]; int hdutype, anyf; char ldummy, msg[FLEN_ERRMSG]; int nullcheck = 1; double nullvalue; if (naxis < 1 || naxis > 9) { sprintf(msg, "NAXIS = %d in call to ffgsvd is out of range", naxis); ffpmsg(msg); return(*status = BAD_DIMEN); } if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ for (ii=0; ii < naxis; ii++) { blcll[ii] = blc[ii]; trcll[ii] = trc[ii]; } nullvalue = nulval; /* set local variable */ fits_read_compressed_img(fptr, TDOUBLE, blcll, trcll, inc, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* if this is a primary array, then the input COLNUM parameter should be interpreted as the row number, and we will alway read the image data from column 2 (any group parameters are in column 1). */ if (ffghdt(fptr, &hdutype, status) > 0) return(*status); if (hdutype == IMAGE_HDU) { /* this is a primary array, or image extension */ if (colnum == 0) { rstr = 1; rstp = 1; } else { rstr = colnum; rstp = colnum; } rinc = 1; numcol = 2; } else { /* this is a table, so the row info is in the (naxis+1) elements */ rstr = blc[naxis]; rstp = trc[naxis]; rinc = inc[naxis]; numcol = colnum; } nultyp = 1; if (anynul) *anynul = FALSE; i0 = 0; for (ii = 0; ii < 9; ii++) { str[ii] = 1; stp[ii] = 1; incr[ii] = 1; dsize[ii] = 1; dir[ii] = 1; } for (ii = 0; ii < naxis; ii++) { if (trc[ii] < blc[ii]) { if (hdutype == IMAGE_HDU) { dir[ii] = -1; } else { sprintf(msg, "ffgsvd: illegal range specified for axis %ld", ii + 1); ffpmsg(msg); return(*status = BAD_PIX_NUM); } } str[ii] = blc[ii]; stp[ii] = trc[ii]; incr[ii] = inc[ii]; dsize[ii + 1] = dsize[ii] * naxes[ii]; dsize[ii] = dsize[ii] * dir[ii]; } dsize[naxis] = dsize[naxis] * dir[naxis]; if (naxis == 1 && naxes[0] == 1) { /* This is not a vector column, so read all the rows at once */ nelem = (rstp - rstr) / rinc + 1; ninc = rinc; rstp = rstr; } else { /* have to read each row individually, in all dimensions */ nelem = (stp[0]*dir[0] - str[0]*dir[0]) / inc[0] + 1; ninc = incr[0] * dir[0]; } for (row = rstr; row <= rstp; row += rinc) { for (i8 = str[8]*dir[8]; i8 <= stp[8]*dir[8]; i8 += incr[8]) { for (i7 = str[7]*dir[7]; i7 <= stp[7]*dir[7]; i7 += incr[7]) { for (i6 = str[6]*dir[6]; i6 <= stp[6]*dir[6]; i6 += incr[6]) { for (i5 = str[5]*dir[5]; i5 <= stp[5]*dir[5]; i5 += incr[5]) { for (i4 = str[4]*dir[4]; i4 <= stp[4]*dir[4]; i4 += incr[4]) { for (i3 = str[3]*dir[3]; i3 <= stp[3]*dir[3]; i3 += incr[3]) { for (i2 = str[2]*dir[2]; i2 <= stp[2]*dir[2]; i2 += incr[2]) { for (i1 = str[1]*dir[1]; i1 <= stp[1]*dir[1]; i1 += incr[1]) { felem=str[0] + (i1 - dir[1]) * dsize[1] + (i2 - dir[2]) * dsize[2] + (i3 - dir[3]) * dsize[3] + (i4 - dir[4]) * dsize[4] + (i5 - dir[5]) * dsize[5] + (i6 - dir[6]) * dsize[6] + (i7 - dir[7]) * dsize[7] + (i8 - dir[8]) * dsize[8]; if ( ffgcld(fptr, numcol, row, felem, nelem, ninc, nultyp, nulval, &array[i0], &ldummy, &anyf, status) > 0) return(*status); if (anyf && anynul) *anynul = TRUE; i0 += nelem; } } } } } } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffgsfd(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of the column to read (1 = 1st) */ int naxis, /* I - number of dimensions in the FITS array */ long *naxes, /* I - size of each dimension */ long *blc, /* I - 'bottom left corner' of the subsection */ long *trc, /* I - 'top right corner' of the subsection */ long *inc, /* I - increment to be applied in each dimension */ double *array, /* O - array to be filled and returned */ char *flagval, /* O - set to 1 if corresponding value is null */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read a subsection of data values from an image or a table column. This routine is set up to handle a maximum of nine dimensions. */ { long ii,i0, i1,i2,i3,i4,i5,i6,i7,i8,row,rstr,rstp,rinc; long str[9],stp[9],incr[9],dsize[10]; LONGLONG blcll[9], trcll[9]; long felem, nelem, nultyp, ninc, numcol; int hdutype, anyf; double nulval = 0; char msg[FLEN_ERRMSG]; int nullcheck = 2; if (naxis < 1 || naxis > 9) { sprintf(msg, "NAXIS = %d in call to ffgsvd is out of range", naxis); ffpmsg(msg); return(*status = BAD_DIMEN); } if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ for (ii=0; ii < naxis; ii++) { blcll[ii] = blc[ii]; trcll[ii] = trc[ii]; } fits_read_compressed_img(fptr, TDOUBLE, blcll, trcll, inc, nullcheck, NULL, array, flagval, anynul, status); return(*status); } /* if this is a primary array, then the input COLNUM parameter should be interpreted as the row number, and we will alway read the image data from column 2 (any group parameters are in column 1). */ if (ffghdt(fptr, &hdutype, status) > 0) return(*status); if (hdutype == IMAGE_HDU) { /* this is a primary array, or image extension */ if (colnum == 0) { rstr = 1; rstp = 1; } else { rstr = colnum; rstp = colnum; } rinc = 1; numcol = 2; } else { /* this is a table, so the row info is in the (naxis+1) elements */ rstr = blc[naxis]; rstp = trc[naxis]; rinc = inc[naxis]; numcol = colnum; } nultyp = 2; if (anynul) *anynul = FALSE; i0 = 0; for (ii = 0; ii < 9; ii++) { str[ii] = 1; stp[ii] = 1; incr[ii] = 1; dsize[ii] = 1; } for (ii = 0; ii < naxis; ii++) { if (trc[ii] < blc[ii]) { sprintf(msg, "ffgsvd: illegal range specified for axis %ld", ii + 1); ffpmsg(msg); return(*status = BAD_PIX_NUM); } str[ii] = blc[ii]; stp[ii] = trc[ii]; incr[ii] = inc[ii]; dsize[ii + 1] = dsize[ii] * naxes[ii]; } if (naxis == 1 && naxes[0] == 1) { /* This is not a vector column, so read all the rows at once */ nelem = (rstp - rstr) / rinc + 1; ninc = rinc; rstp = rstr; } else { /* have to read each row individually, in all dimensions */ nelem = (stp[0] - str[0]) / inc[0] + 1; ninc = incr[0]; } for (row = rstr; row <= rstp; row += rinc) { for (i8 = str[8]; i8 <= stp[8]; i8 += incr[8]) { for (i7 = str[7]; i7 <= stp[7]; i7 += incr[7]) { for (i6 = str[6]; i6 <= stp[6]; i6 += incr[6]) { for (i5 = str[5]; i5 <= stp[5]; i5 += incr[5]) { for (i4 = str[4]; i4 <= stp[4]; i4 += incr[4]) { for (i3 = str[3]; i3 <= stp[3]; i3 += incr[3]) { for (i2 = str[2]; i2 <= stp[2]; i2 += incr[2]) { for (i1 = str[1]; i1 <= stp[1]; i1 += incr[1]) { felem=str[0] + (i1 - 1) * dsize[1] + (i2 - 1) * dsize[2] + (i3 - 1) * dsize[3] + (i4 - 1) * dsize[4] + (i5 - 1) * dsize[5] + (i6 - 1) * dsize[6] + (i7 - 1) * dsize[7] + (i8 - 1) * dsize[8]; if ( ffgcld(fptr, numcol, row, felem, nelem, ninc, nultyp, nulval, &array[i0], &flagval[i0], &anyf, status) > 0) return(*status); if (anyf && anynul) *anynul = TRUE; i0 += nelem; } } } } } } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffggpd( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ long firstelem, /* I - first vector element to read (1 = 1st) */ long nelem, /* I - number of values to read */ double *array, /* O - array of values that are returned */ int *status) /* IO - error status */ /* Read an array of group parameters from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). */ { long row; int idummy; char cdummy; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgcld(fptr, 1, row, firstelem, nelem, 1, 1, 0., array, &cdummy, &idummy, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcvd(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ double nulval, /* I - value for null pixels */ double *array, /* O - array of values that are read */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Any undefined pixels will be set equal to the value of 'nulval' unless nulval = 0 in which case no checks for undefined pixels will be made. */ { char cdummy; ffgcld(fptr, colnum, firstrow, firstelem, nelem, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcvm(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ double nulval, /* I - value for null pixels */ double *array, /* O - array of values that are read */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Any undefined pixels will be set equal to the value of 'nulval' unless nulval = 0 in which case no checks for undefined pixels will be made. TSCAL and ZERO should not be used with complex values. */ { char cdummy; /* a complex double value is interpreted as a pair of double values, */ /* thus need to multiply the first element and number of elements by 2 */ ffgcld(fptr, colnum, firstrow, (firstelem - 1) * 2 + 1, nelem * 2, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcfd(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ double *array, /* O - array of values that are read */ char *nularray, /* O - array of flags: 1 if null pixel; else 0 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Nularray will be set = 1 if the corresponding array pixel is undefined, otherwise nularray will = 0. */ { double dummy = 0; ffgcld(fptr, colnum, firstrow, firstelem, nelem, 1, 2, dummy, array, nularray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcfm(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ double *array, /* O - array of values that are read */ char *nularray, /* O - array of flags: 1 if null pixel; else 0 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Nularray will be set = 1 if the corresponding array pixel is undefined, otherwise nularray will = 0. TSCAL and ZERO should not be used with complex values. */ { LONGLONG ii, jj; float dummy = 0; char *carray; /* a complex double value is interpreted as a pair of double values, */ /* thus need to multiply the first element and number of elements by 2 */ /* allocate temporary array */ carray = (char *) calloc( (size_t) (nelem * 2), 1); ffgcld(fptr, colnum, firstrow, (firstelem - 1) * 2 + 1, nelem * 2, 1, 2, dummy, array, carray, anynul, status); for (ii = 0, jj = 0; jj < nelem; ii += 2, jj++) { if (carray[ii] || carray[ii + 1]) nularray[jj] = 1; else nularray[jj] = 0; } free(carray); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcld( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ long elemincre, /* I - pixel increment; e.g., 2 = every other */ int nultyp, /* I - null value handling code: */ /* 1: set undefined pixels = nulval */ /* 2: set nularray=1 for undefined pixels */ double nulval, /* I - value for null pixels if nultyp = 1 */ double *array, /* O - array of values that are read */ char *nularray, /* O - array of flags = 1 if nultyp = 2 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. The column number may refer to a real column in an ASCII or binary table, or it may refer be a virtual column in a 1 or more grouped FITS primary array or image extension. FITSIO treats a primary array as a binary table with 2 vector columns: the first column contains the group parameters (often with length = 0) and the second column contains the array of image pixels. Each row of the table represents a group in the case of multigroup FITS images. The output array of values will be converted from the datatype of the column and will be scaled by the FITS TSCALn and TZEROn values if necessary. */ { double scale, zero, power = 1, dtemp; int tcode, hdutype, xcode, decimals, maxelem2; long twidth, incre; long ii, xwidth, ntodo; int convert, nulcheck, readcheck = 0; LONGLONG repeat, startpos, elemnum, readptr, tnull; LONGLONG rowlen, rownum, remain, next, rowincre, maxelem; char tform[20]; char message[81]; char snull[20]; /* the FITS null value if reading from ASCII table */ double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */ void *buffer; if (*status > 0 || nelem == 0) /* inherit input status value if > 0 */ return(*status); buffer = cbuff; if (anynul) *anynul = 0; if (nultyp == 2) memset(nularray, 0, (size_t) nelem); /* initialize nullarray */ /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if (elemincre < 0) readcheck = -1; /* don't do range checking in this case */ if ( ffgcprll( fptr, colnum, firstrow, firstelem, nelem, readcheck, &scale, &zero, tform, &twidth, &tcode, &maxelem2, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0 ) return(*status); maxelem = maxelem2; incre *= elemincre; /* multiply incre to just get every nth pixel */ if (tcode == TSTRING) /* setup for ASCII tables */ { /* get the number of implied decimal places if no explicit decmal point */ ffasfm(tform, &xcode, &xwidth, &decimals, status); for(ii = 0; ii < decimals; ii++) power *= 10.; } /*------------------------------------------------------------------*/ /* Decide whether to check for null values in the input FITS file: */ /*------------------------------------------------------------------*/ nulcheck = nultyp; /* by default check for null values in the FITS file */ if (nultyp == 1 && nulval == 0) nulcheck = 0; /* calling routine does not want to check for nulls */ else if (tcode%10 == 1 && /* if reading an integer column, and */ tnull == NULL_UNDEFINED) /* if a null value is not defined, */ nulcheck = 0; /* then do not check for null values. */ else if (tcode == TSHORT && (tnull > SHRT_MAX || tnull < SHRT_MIN) ) nulcheck = 0; /* Impossible null value */ else if (tcode == TBYTE && (tnull > 255 || tnull < 0) ) nulcheck = 0; /* Impossible null value */ else if (tcode == TSTRING && snull[0] == ASCII_NULL_UNDEFINED) nulcheck = 0; /*----------------------------------------------------------------------*/ /* If FITS column and output data array have same datatype, then we do */ /* not need to use a temporary buffer to store intermediate datatype. */ /*----------------------------------------------------------------------*/ convert = 1; if (tcode == TDOUBLE) /* Special Case: */ { /* no type convertion required, so read */ /* data directly into output buffer. */ if (nelem < (LONGLONG)INT32_MAX/8) { maxelem = nelem; } else { maxelem = INT32_MAX/8; } if (nulcheck == 0 && scale == 1. && zero == 0.) convert = 0; /* no need to scale data or find nulls */ } /*---------------------------------------------------------------------*/ /* Now read the pixels from the FITS column. If the column does not */ /* have the same datatype as the output array, then we have to read */ /* the raw values into a temporary buffer (of limited size). In */ /* the case of a vector colum read only 1 vector of values at a time */ /* then skip to the next row if more values need to be read. */ /* After reading the raw values, then call the fffXXYY routine to (1) */ /* test for undefined values, (2) convert the datatype if necessary, */ /* and (3) scale the values by the FITS TSCALn and TZEROn linear */ /* scaling parameters. */ /*---------------------------------------------------------------------*/ remain = nelem; /* remaining number of values to read */ next = 0; /* next element in array to be read */ rownum = 0; /* row number, relative to firstrow */ while (remain) { /* limit the number of pixels to read at one time to the number that will fit in the buffer or to the number of pixels that remain in the current vector, which ever is smaller. */ ntodo = (long) minvalue(remain, maxelem); if (elemincre >= 0) { ntodo = (long) minvalue(ntodo, ((repeat - elemnum - 1)/elemincre +1)); } else { ntodo = (long) minvalue(ntodo, (elemnum/(-elemincre) +1)); } readptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * (incre / elemincre)); switch (tcode) { case (TDOUBLE): ffgr8b(fptr, readptr, ntodo, incre, &array[next], status); if (convert) fffr8r8(&array[next], ntodo, scale, zero, nulcheck, nulval, &nularray[next], anynul, &array[next], status); break; case (TBYTE): ffgi1b(fptr, readptr, ntodo, incre, (unsigned char *) buffer, status); fffi1r8((unsigned char *) buffer, ntodo, scale, zero, nulcheck, (unsigned char) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TSHORT): ffgi2b(fptr, readptr, ntodo, incre, (short *) buffer, status); fffi2r8((short *) buffer, ntodo, scale, zero, nulcheck, (short) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TLONG): ffgi4b(fptr, readptr, ntodo, incre, (INT32BIT *) buffer, status); fffi4r8((INT32BIT *) buffer, ntodo, scale, zero, nulcheck, (INT32BIT) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TLONGLONG): ffgi8b(fptr, readptr, ntodo, incre, (long *) buffer, status); fffi8r8( (LONGLONG *) buffer, ntodo, scale, zero, nulcheck, tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TFLOAT): ffgr4b(fptr, readptr, ntodo, incre, (float *) buffer, status); fffr4r8((float *) buffer, ntodo, scale, zero, nulcheck, nulval, &nularray[next], anynul, &array[next], status); break; case (TSTRING): ffmbyt(fptr, readptr, REPORT_EOF, status); if (incre == twidth) /* contiguous bytes */ ffgbyt(fptr, ntodo * twidth, buffer, status); else ffgbytoff(fptr, twidth, ntodo, incre - twidth, buffer, status); fffstrr8((char *) buffer, ntodo, scale, zero, twidth, power, nulcheck, snull, nulval, &nularray[next], anynul, &array[next], status); break; default: /* error trap for invalid column format */ sprintf(message, "Cannot read numbers from column %d which has format %s", colnum, tform); ffpmsg(message); if (hdutype == ASCII_TBL) return(*status = BAD_ATABLE_FORMAT); else return(*status = BAD_BTABLE_FORMAT); } /* End of switch block */ /*-------------------------*/ /* Check for fatal error */ /*-------------------------*/ if (*status > 0) /* test for error during previous read operation */ { dtemp = (double) next; if (hdutype > 0) sprintf(message, "Error reading elements %.0f thru %.0f from column %d (ffgcld).", dtemp+1., dtemp+ntodo, colnum); else sprintf(message, "Error reading elements %.0f thru %.0f from image (ffgcld).", dtemp+1., dtemp+ntodo); ffpmsg(message); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain -= ntodo; if (remain) { next += ntodo; elemnum = elemnum + (ntodo * elemincre); if (elemnum >= repeat) /* completed a row; start on later row */ { rowincre = (long) (elemnum / repeat); rownum += rowincre; elemnum = elemnum - (rowincre * repeat); } else if (elemnum < 0) /* completed a row; start on a previous row */ { rowincre = (long) ((-elemnum - 1) / repeat + 1); rownum -= rowincre; elemnum = (rowincre * repeat) + elemnum; } } } /* End of main while Loop */ /*--------------------------------*/ /* check for numerical overflow */ /*--------------------------------*/ if (*status == OVERFLOW_ERR) { ffpmsg( "Numerical overflow during type conversion while reading FITS data."); *status = NUM_OVERFLOW; } return(*status); } /*--------------------------------------------------------------------------*/ int fffi1r8(unsigned char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ unsigned char tnull, /* I - value of FITS TNULLn keyword if any */ double nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ double *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) output[ii] = (double) input[ii]; /* copy input to output */ } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { output[ii] = input[ii] * scale + zero; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = (double) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { output[ii] = input[ii] * scale + zero; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi2r8(short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ short tnull, /* I - value of FITS TNULLn keyword if any */ double nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ double *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) output[ii] = (double) input[ii]; /* copy input to output */ } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { output[ii] = input[ii] * scale + zero; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = (double) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { output[ii] = input[ii] * scale + zero; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi4r8(INT32BIT *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ INT32BIT tnull, /* I - value of FITS TNULLn keyword if any */ double nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ double *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) output[ii] = (double) input[ii]; /* copy input to output */ } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { output[ii] = input[ii] * scale + zero; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = (double) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { output[ii] = input[ii] * scale + zero; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi8r8(LONGLONG *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ LONGLONG tnull, /* I - value of FITS TNULLn keyword if any */ double nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ double *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) output[ii] = (double) input[ii]; /* copy input to output */ } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { output[ii] = input[ii] * scale + zero; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = (double) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { output[ii] = input[ii] * scale + zero; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffr4r8(float *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ double nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ double *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to NaN. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; short *sptr, iret; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) output[ii] = (double) input[ii]; /* copy input to output */ } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { output[ii] = input[ii] * scale + zero; } } } else /* must check for null values */ { sptr = (short *) input; #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS sptr++; /* point to MSBs */ #endif if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++, sptr += 2) { if (0 != (iret = fnan(*sptr) ) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ output[ii] = 0; } else output[ii] = (double) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++, sptr += 2) { if (0 != (iret = fnan(*sptr) ) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ output[ii] = zero; } else output[ii] = input[ii] * scale + zero; } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffr8r8(double *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ double nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ double *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to NaN. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; short *sptr, iret; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { memcpy(output, input, ntodo * sizeof(double) ); } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { output[ii] = input[ii] * scale + zero; } } } else /* must check for null values */ { sptr = (short *) input; #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS sptr += 3; /* point to MSBs */ #endif if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++, sptr += 4) { if (0 != (iret = dnan(*sptr)) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else { nullarray[ii] = 1; /* explicitly set value in case output contains a NaN */ output[ii] = DOUBLENULLVALUE; } } else /* it's an underflow */ output[ii] = 0; } else output[ii] = input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++, sptr += 4) { if (0 != (iret = dnan(*sptr)) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else { nullarray[ii] = 1; /* explicitly set value in case output contains a NaN */ output[ii] = DOUBLENULLVALUE; } } else /* it's an underflow */ output[ii] = zero; } else output[ii] = input[ii] * scale + zero; } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffstrr8(char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ long twidth, /* I - width of each substring of chars */ double implipower, /* I - power of 10 of implied decimal */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ char *snull, /* I - value of FITS null string, if any */ double nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ double *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to snull. If nullcheck= 0, then no special checking for nulls is performed. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { int nullen; long ii; double dvalue; char *cstring, message[81]; char *cptr, *tpos; char tempstore, chrzero = '0'; double val, power; int exponent, sign, esign, decpt; nullen = strlen(snull); cptr = input; /* pointer to start of input string */ for (ii = 0; ii < ntodo; ii++) { cstring = cptr; /* temporarily insert a null terminator at end of the string */ tpos = cptr + twidth; tempstore = *tpos; *tpos = 0; /* check if null value is defined, and if the */ /* column string is identical to the null string */ if (snull[0] != ASCII_NULL_UNDEFINED && !strncmp(snull, cptr, nullen) ) { if (nullcheck) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } cptr += twidth; } else { /* value is not the null value, so decode it */ /* remove any embedded blank characters from the string */ decpt = 0; sign = 1; val = 0.; power = 1.; exponent = 0; esign = 1; while (*cptr == ' ') /* skip leading blanks */ cptr++; if (*cptr == '-' || *cptr == '+') /* check for leading sign */ { if (*cptr == '-') sign = -1; cptr++; while (*cptr == ' ') /* skip blanks between sign and value */ cptr++; } while (*cptr >= '0' && *cptr <= '9') { val = val * 10. + *cptr - chrzero; /* accumulate the value */ cptr++; while (*cptr == ' ') /* skip embedded blanks in the value */ cptr++; } if (*cptr == '.' || *cptr == ',') /* check for decimal point */ { decpt = 1; /* set flag to show there was a decimal point */ cptr++; while (*cptr == ' ') /* skip any blanks */ cptr++; while (*cptr >= '0' && *cptr <= '9') { val = val * 10. + *cptr - chrzero; /* accumulate the value */ power = power * 10.; cptr++; while (*cptr == ' ') /* skip embedded blanks in the value */ cptr++; } } if (*cptr == 'E' || *cptr == 'D') /* check for exponent */ { cptr++; while (*cptr == ' ') /* skip blanks */ cptr++; if (*cptr == '-' || *cptr == '+') /* check for exponent sign */ { if (*cptr == '-') esign = -1; cptr++; while (*cptr == ' ') /* skip blanks between sign and exp */ cptr++; } while (*cptr >= '0' && *cptr <= '9') { exponent = exponent * 10 + *cptr - chrzero; /* accumulate exp */ cptr++; while (*cptr == ' ') /* skip embedded blanks */ cptr++; } } if (*cptr != 0) /* should end up at the null terminator */ { sprintf(message, "Cannot read number from ASCII table"); ffpmsg(message); sprintf(message, "Column field = %s.", cstring); ffpmsg(message); /* restore the char that was overwritten by the null */ *tpos = tempstore; return(*status = BAD_C2D); } if (!decpt) /* if no explicit decimal, use implied */ power = implipower; dvalue = (sign * val / power) * pow(10., (double) (esign * exponent)); output[ii] = (dvalue * scale + zero); /* apply the scaling */ } /* restore the char that was overwritten by the null */ *tpos = tempstore; } return(*status); } healpy-1.8.1/cfitsio/getcols.c0000654000175000017530000007055212272000775016672 0ustar zoncaplanck00000000000000/* This file, getcols.c, contains routines that read data elements from */ /* a FITS image or table, with a character string datatype. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include /* stddef.h is apparently needed to define size_t */ #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffgcvs( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of strings to read */ char *nulval, /* I - string for null pixels */ char **array, /* O - array of values that are read */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of string values from a column in the current FITS HDU. Any undefined pixels will be set equal to the value of 'nulval' unless nulval = null in which case no checks for undefined pixels will be made. */ { char cdummy[2]; ffgcls(fptr, colnum, firstrow, firstelem, nelem, 1, nulval, array, cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcfs( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of strings to read */ char **array, /* O - array of values that are read */ char *nularray, /* O - array of flags = 1 if nultyp = 2 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of string values from a column in the current FITS HDU. Nularray will be set = 1 if the corresponding array pixel is undefined, otherwise nularray will = 0. */ { char dummy[2]; ffgcls(fptr, colnum, firstrow, firstelem, nelem, 2, dummy, array, nularray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcls( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of strings to read */ int nultyp, /* I - null value handling code: */ /* 1: set undefined pixels = nulval */ /* 2: set nularray=1 for undefined pixels */ char *nulval, /* I - value for null pixels if nultyp = 1 */ char **array, /* O - array of values that are read */ char *nularray, /* O - array of flags = 1 if nultyp = 2 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of string values from a column in the current FITS HDU. Returns a formated string value, regardless of the datatype of the column */ { int tcode, hdutype, tstatus, scaled, intcol, dwidth, nulwidth, ll, dlen; long ii, jj; tcolumn *colptr; char message[FLEN_ERRMSG], *carray, keyname[FLEN_KEYWORD]; char cform[20], dispfmt[20], tmpstr[400], *flgarray, tmpnull[80]; unsigned char byteval; float *earray; double *darray, tscale = 1.0; LONGLONG *llarray; if (*status > 0 || nelem == 0) /* inherit input status value if > 0 */ return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); /* rescan header if data structure is undefined */ else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) return(*status); if (colnum < 1 || colnum > (fptr->Fptr)->tfield) { sprintf(message, "Specified column number is out of range: %d", colnum); ffpmsg(message); return(*status = BAD_COL_NUM); } colptr = (fptr->Fptr)->tableptr; /* point to first column */ colptr += (colnum - 1); /* offset to correct column structure */ tcode = abs(colptr->tdatatype); if (tcode == TSTRING) { /* simply call the string column reading routine */ ffgcls2(fptr, colnum, firstrow, firstelem, nelem, nultyp, nulval, array, nularray, anynul, status); } else if (tcode == TLOGICAL) { /* allocate memory for the array of logical values */ carray = (char *) malloc((size_t) nelem); /* call the logical column reading routine */ ffgcll(fptr, colnum, firstrow, firstelem, nelem, nultyp, *nulval, carray, nularray, anynul, status); if (*status <= 0) { /* convert logical values to "T", "F", or "N" (Null) */ for (ii = 0; ii < nelem; ii++) { if (carray[ii] == 1) strcpy(array[ii], "T"); else if (carray[ii] == 0) strcpy(array[ii], "F"); else /* undefined values = 2 */ strcpy(array[ii],"N"); } } free(carray); /* free the memory */ } else if (tcode == TCOMPLEX) { /* allocate memory for the array of double values */ earray = (float *) calloc((size_t) (nelem * 2), sizeof(float) ); ffgcle(fptr, colnum, firstrow, (firstelem - 1) * 2 + 1, nelem * 2, 1, 1, FLOATNULLVALUE, earray, nularray, anynul, status); if (*status <= 0) { /* determine the format for the output strings */ ffgcdw(fptr, colnum, &dwidth, status); dwidth = (dwidth - 3) / 2; /* use the TDISPn keyword if it exists */ ffkeyn("TDISP", colnum, keyname, status); tstatus = 0; cform[0] = '\0'; if (ffgkys(fptr, keyname, dispfmt, NULL, &tstatus) == 0) { /* convert the Fortran style format to a C style format */ ffcdsp(dispfmt, cform); } if (!cform[0]) strcpy(cform, "%14.6E"); /* write the formated string for each value: "(real,imag)" */ jj = 0; for (ii = 0; ii < nelem; ii++) { strcpy(array[ii], "("); /* test for null value */ if (earray[jj] == FLOATNULLVALUE) { strcpy(tmpstr, "NULL"); if (nultyp == 2) nularray[ii] = 1; } else sprintf(tmpstr, cform, earray[jj]); strncat(array[ii], tmpstr, dwidth); strcat(array[ii], ","); jj++; /* test for null value */ if (earray[jj] == FLOATNULLVALUE) { strcpy(tmpstr, "NULL"); if (nultyp == 2) nularray[ii] = 1; } else sprintf(tmpstr, cform, earray[jj]); strncat(array[ii], tmpstr, dwidth); strcat(array[ii], ")"); jj++; } } free(earray); /* free the memory */ } else if (tcode == TDBLCOMPLEX) { /* allocate memory for the array of double values */ darray = (double *) calloc((size_t) (nelem * 2), sizeof(double) ); ffgcld(fptr, colnum, firstrow, (firstelem - 1) * 2 + 1, nelem * 2, 1, 1, DOUBLENULLVALUE, darray, nularray, anynul, status); if (*status <= 0) { /* determine the format for the output strings */ ffgcdw(fptr, colnum, &dwidth, status); dwidth = (dwidth - 3) / 2; /* use the TDISPn keyword if it exists */ ffkeyn("TDISP", colnum, keyname, status); tstatus = 0; cform[0] = '\0'; if (ffgkys(fptr, keyname, dispfmt, NULL, &tstatus) == 0) { /* convert the Fortran style format to a C style format */ ffcdsp(dispfmt, cform); } if (!cform[0]) strcpy(cform, "%23.15E"); /* write the formated string for each value: "(real,imag)" */ jj = 0; for (ii = 0; ii < nelem; ii++) { strcpy(array[ii], "("); /* test for null value */ if (darray[jj] == DOUBLENULLVALUE) { strcpy(tmpstr, "NULL"); if (nultyp == 2) nularray[ii] = 1; } else sprintf(tmpstr, cform, darray[jj]); strncat(array[ii], tmpstr, dwidth); strcat(array[ii], ","); jj++; /* test for null value */ if (darray[jj] == DOUBLENULLVALUE) { strcpy(tmpstr, "NULL"); if (nultyp == 2) nularray[ii] = 1; } else sprintf(tmpstr, cform, darray[jj]); strncat(array[ii], tmpstr, dwidth); strcat(array[ii], ")"); jj++; } } free(darray); /* free the memory */ } else if (tcode == TLONGLONG) { /* allocate memory for the array of LONGLONG values */ llarray = (LONGLONG *) calloc((size_t) nelem, sizeof(LONGLONG) ); flgarray = (char *) calloc((size_t) nelem, sizeof(char) ); dwidth = 20; /* max width of displayed long long integer value */ if (ffgcfjj(fptr, colnum, firstrow, firstelem, nelem, llarray, flgarray, anynul, status) > 0) { free(flgarray); free(llarray); return(*status); } /* write the formated string for each value */ if (nulval) { strcpy(tmpnull, nulval); nulwidth = strlen(nulval); } else { strcpy(tmpnull, " "); nulwidth = 1; } for (ii = 0; ii < nelem; ii++) { if ( flgarray[ii] ) { *array[ii] = '\0'; if (dwidth < nulwidth) strncat(array[ii], tmpnull, dwidth); else sprintf(array[ii],"%*s",dwidth,tmpnull); if (nultyp == 2) nularray[ii] = 1; } else { #if defined(_MSC_VER) /* Microsoft Visual C++ 6.0 uses '%I64d' syntax for 8-byte integers */ sprintf(tmpstr, "%20I64d", llarray[ii]); #elif (USE_LL_SUFFIX == 1) sprintf(tmpstr, "%20lld", llarray[ii]); #else sprintf(tmpstr, "%20ld", llarray[ii]); #endif *array[ii] = '\0'; strncat(array[ii], tmpstr, 20); } } free(flgarray); free(llarray); /* free the memory */ } else { /* allocate memory for the array of double values */ darray = (double *) calloc((size_t) nelem, sizeof(double) ); /* read all other numeric type columns as doubles */ if (ffgcld(fptr, colnum, firstrow, firstelem, nelem, 1, nultyp, DOUBLENULLVALUE, darray, nularray, anynul, status) > 0) { free(darray); return(*status); } /* determine the format for the output strings */ ffgcdw(fptr, colnum, &dwidth, status); /* check if column is scaled */ ffkeyn("TSCAL", colnum, keyname, status); tstatus = 0; scaled = 0; if (ffgkyd(fptr, keyname, &tscale, NULL, &tstatus) == 0) { if (tscale != 1.0) scaled = 1; /* yes, this is a scaled column */ } intcol = 0; if (tcode <= TLONG && !scaled) intcol = 1; /* this is an unscaled integer column */ /* use the TDISPn keyword if it exists */ ffkeyn("TDISP", colnum, keyname, status); tstatus = 0; cform[0] = '\0'; if (ffgkys(fptr, keyname, dispfmt, NULL, &tstatus) == 0) { /* convert the Fortran style TDISPn to a C style format */ ffcdsp(dispfmt, cform); } if (!cform[0]) { /* no TDISPn keyword; use TFORMn instead */ ffkeyn("TFORM", colnum, keyname, status); ffgkys(fptr, keyname, dispfmt, NULL, status); if (scaled && tcode <= TSHORT) { /* scaled short integer column == float */ strcpy(cform, "%#14.6G"); } else if (scaled && tcode == TLONG) { /* scaled long integer column == double */ strcpy(cform, "%#23.15G"); } else { ffghdt(fptr, &hdutype, status); if (hdutype == ASCII_TBL) { /* convert the Fortran style TFORMn to a C style format */ ffcdsp(dispfmt, cform); } else { /* this is a binary table, need to convert the format */ if (tcode == TBIT) { /* 'X' */ strcpy(cform, "%4d"); } else if (tcode == TBYTE) { /* 'B' */ strcpy(cform, "%4d"); } else if (tcode == TSHORT) { /* 'I' */ strcpy(cform, "%6d"); } else if (tcode == TLONG) { /* 'J' */ strcpy(cform, "%11.0f"); intcol = 0; /* needed to support unsigned int */ } else if (tcode == TFLOAT) { /* 'E' */ strcpy(cform, "%#14.6G"); } else if (tcode == TDOUBLE) { /* 'D' */ strcpy(cform, "%#23.15G"); } } } } if (nulval) { strcpy(tmpnull, nulval); nulwidth = strlen(nulval); } else { strcpy(tmpnull, " "); nulwidth = 1; } /* write the formated string for each value */ for (ii = 0; ii < nelem; ii++) { if (tcode == TBIT) { byteval = (char) darray[ii]; for (ll=0; ll < 8; ll++) { if ( ((unsigned char) (byteval << ll)) >> 7 ) *(array[ii] + ll) = '1'; else *(array[ii] + ll) = '0'; } *(array[ii] + 8) = '\0'; } /* test for null value */ else if ( (nultyp == 1 && darray[ii] == DOUBLENULLVALUE) || (nultyp == 2 && nularray[ii]) ) { *array[ii] = '\0'; if (dwidth < nulwidth) strncat(array[ii], tmpnull, dwidth); else sprintf(array[ii],"%*s",dwidth,tmpnull); } else { if (intcol) sprintf(tmpstr, cform, (int) darray[ii]); else sprintf(tmpstr, cform, darray[ii]); /* fill field with '*' if number is too wide */ dlen = strlen(tmpstr); if (dlen > dwidth) { memset(tmpstr, '*', dwidth); } *array[ii] = '\0'; strncat(array[ii], tmpstr, dwidth); } } free(darray); /* free the memory */ } return(*status); } /*--------------------------------------------------------------------------*/ int ffgcdw( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column (1 = 1st col) */ int *width, /* O - display width */ int *status) /* IO - error status */ /* Get Column Display Width. */ { tcolumn *colptr; char *cptr; char message[FLEN_ERRMSG], keyname[FLEN_KEYWORD], dispfmt[20]; int tcode, hdutype, tstatus, scaled; double tscale; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); if (colnum < 1 || colnum > (fptr->Fptr)->tfield) { sprintf(message, "Specified column number is out of range: %d", colnum); ffpmsg(message); return(*status = BAD_COL_NUM); } colptr = (fptr->Fptr)->tableptr; /* point to first column */ colptr += (colnum - 1); /* offset to correct column structure */ tcode = abs(colptr->tdatatype); /* use the TDISPn keyword if it exists */ ffkeyn("TDISP", colnum, keyname, status); *width = 0; tstatus = 0; if (ffgkys(fptr, keyname, dispfmt, NULL, &tstatus) == 0) { /* parse TDISPn get the display width */ cptr = dispfmt; while(*cptr == ' ') /* skip leading blanks */ cptr++; if (*cptr == 'A' || *cptr == 'a' || *cptr == 'I' || *cptr == 'i' || *cptr == 'O' || *cptr == 'o' || *cptr == 'Z' || *cptr == 'z' || *cptr == 'F' || *cptr == 'f' || *cptr == 'E' || *cptr == 'e' || *cptr == 'D' || *cptr == 'd' || *cptr == 'G' || *cptr == 'g') { while(!isdigit((int) *cptr) && *cptr != '\0') /* find 1st digit */ cptr++; *width = atoi(cptr); if (tcode >= TCOMPLEX) *width = (2 * (*width)) + 3; } } if (*width == 0) { /* no valid TDISPn keyword; use TFORMn instead */ ffkeyn("TFORM", colnum, keyname, status); ffgkys(fptr, keyname, dispfmt, NULL, status); /* check if column is scaled */ ffkeyn("TSCAL", colnum, keyname, status); tstatus = 0; scaled = 0; if (ffgkyd(fptr, keyname, &tscale, NULL, &tstatus) == 0) { if (tscale != 1.0) scaled = 1; /* yes, this is a scaled column */ } if (scaled && tcode <= TSHORT) { /* scaled short integer col == float; default format is 14.6G */ *width = 14; } else if (scaled && tcode == TLONG) { /* scaled long integer col == double; default format is 23.15G */ *width = 23; } else { ffghdt(fptr, &hdutype, status); /* get type of table */ if (hdutype == ASCII_TBL) { /* parse TFORMn get the display width */ cptr = dispfmt; while(!isdigit((int) *cptr) && *cptr != '\0') /* find 1st digit */ cptr++; *width = atoi(cptr); } else { /* this is a binary table */ if (tcode == TBIT) /* 'X' */ *width = 8; else if (tcode == TBYTE) /* 'B' */ *width = 4; else if (tcode == TSHORT) /* 'I' */ *width = 6; else if (tcode == TLONG) /* 'J' */ *width = 11; else if (tcode == TLONGLONG) /* 'K' */ *width = 20; else if (tcode == TFLOAT) /* 'E' */ *width = 14; else if (tcode == TDOUBLE) /* 'D' */ *width = 23; else if (tcode == TCOMPLEX) /* 'C' */ *width = 31; else if (tcode == TDBLCOMPLEX) /* 'M' */ *width = 49; else if (tcode == TLOGICAL) /* 'L' */ *width = 1; else if (tcode == TSTRING) /* 'A' */ { cptr = dispfmt; while(!isdigit((int) *cptr) && *cptr != '\0') cptr++; *width = atoi(cptr); if (*width < 1) *width = 1; /* default is at least 1 column */ } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffgcls2 ( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of strings to read */ int nultyp, /* I - null value handling code: */ /* 1: set undefined pixels = nulval */ /* 2: set nularray=1 for undefined pixels */ char *nulval, /* I - value for null pixels if nultyp = 1 */ char **array, /* O - array of values that are read */ char *nularray, /* O - array of flags = 1 if nultyp = 2 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of string values from a column in the current FITS HDU. */ { double dtemp; long nullen; int tcode, maxelem, hdutype, nulcheck; long twidth, incre; long ii, jj, ntodo; LONGLONG repeat, startpos, elemnum, readptr, tnull, rowlen, rownum, remain, next; double scale, zero; char tform[20]; char message[FLEN_ERRMSG]; char snull[20]; /* the FITS null value */ tcolumn *colptr; double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */ char *buffer, *arrayptr; if (*status > 0 || nelem == 0) /* inherit input status value if > 0 */ return(*status); if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); if (anynul) *anynul = 0; if (nultyp == 2) memset(nularray, 0, (size_t) nelem); /* initialize nullarray */ /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if (colnum < 1 || colnum > (fptr->Fptr)->tfield) { sprintf(message, "Specified column number is out of range: %d", colnum); ffpmsg(message); return(*status = BAD_COL_NUM); } colptr = (fptr->Fptr)->tableptr; /* point to first column */ colptr += (colnum - 1); /* offset to correct column structure */ tcode = colptr->tdatatype; if (tcode == -TSTRING) /* variable length column in a binary table? */ { /* only read a single string; ignore value of firstelem */ if (ffgcprll( fptr, colnum, firstrow, 1, 1, 0, &scale, &zero, tform, &twidth, &tcode, &maxelem, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0) return(*status); remain = 1; twidth = (long) repeat; } else if (tcode == TSTRING) { if (ffgcprll( fptr, colnum, firstrow, firstelem, nelem, 0, &scale, &zero, tform, &twidth, &tcode, &maxelem, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0) return(*status); /* if string length is greater than a FITS block (2880 char) then must */ /* only read 1 string at a time, to force reading by ffgbyt instead of */ /* ffgbytoff (ffgbytoff can't handle this case) */ if (twidth > IOBUFLEN) { maxelem = 1; incre = twidth; repeat = 1; } remain = nelem; } else return(*status = NOT_ASCII_COL); nullen = strlen(snull); /* length of the undefined pixel string */ if (nullen == 0) nullen = 1; /*------------------------------------------------------------------*/ /* Decide whether to check for null values in the input FITS file: */ /*------------------------------------------------------------------*/ nulcheck = nultyp; /* by default check for null values in the FITS file */ if (nultyp == 1 && nulval == 0) nulcheck = 0; /* calling routine does not want to check for nulls */ else if (nultyp == 1 && nulval && nulval[0] == 0) nulcheck = 0; /* calling routine does not want to check for nulls */ else if (snull[0] == ASCII_NULL_UNDEFINED) nulcheck = 0; /* null value string in ASCII table not defined */ else if (nullen > twidth) nulcheck = 0; /* null value string is longer than width of column */ /* thus impossible for any column elements to = null */ /*---------------------------------------------------------------------*/ /* Now read the strings one at a time from the FITS column. */ /*---------------------------------------------------------------------*/ next = 0; /* next element in array to be read */ rownum = 0; /* row number, relative to firstrow */ while (remain) { /* limit the number of pixels to process at one time to the number that will fit in the buffer space or to the number of pixels that remain in the current vector, which ever is smaller. */ ntodo = (long) minvalue(remain, maxelem); ntodo = (long) minvalue(ntodo, (repeat - elemnum)); readptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * incre); ffmbyt(fptr, readptr, REPORT_EOF, status); /* move to read position */ /* read the array of strings from the FITS file into the buffer */ if (incre == twidth) ffgbyt(fptr, ntodo * twidth, cbuff, status); else ffgbytoff(fptr, twidth, ntodo, incre - twidth, cbuff, status); /* copy from the buffer into the user's array of strings */ /* work backwards from last char of last string to 1st char of 1st */ buffer = ((char *) cbuff) + (ntodo * twidth) - 1; for (ii = (long) (next + ntodo - 1); ii >= next; ii--) { arrayptr = array[ii] + twidth - 1; for (jj = twidth - 1; jj > 0; jj--) /* ignore trailing blanks */ { if (*buffer == ' ') { buffer--; arrayptr--; } else break; } *(arrayptr + 1) = 0; /* write the string terminator */ for (; jj >= 0; jj--) /* copy the string itself */ { *arrayptr = *buffer; buffer--; arrayptr--; } /* check if null value is defined, and if the */ /* column string is identical to the null string */ if (nulcheck && !strncmp(snull, array[ii], nullen) ) { *anynul = 1; /* this is a null value */ if (nultyp == 1) { if (nulval) strcpy(array[ii], nulval); else strcpy(array[ii], " "); } else nularray[ii] = 1; } } if (*status > 0) /* test for error during previous read operation */ { dtemp = (double) next; sprintf(message, "Error reading elements %.0f thru %.0f of data array (ffpcls).", dtemp+1., dtemp+ntodo); ffpmsg(message); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ next += ntodo; remain -= ntodo; if (remain) { elemnum += ntodo; if (elemnum == repeat) /* completed a row; start on next row */ { elemnum = 0; rownum++; } } } /* End of main while Loop */ return(*status); } healpy-1.8.1/cfitsio/getcolsb.c0000654000175000017530000022324512272000775017033 0ustar zoncaplanck00000000000000/* This file, getcolsb.c, contains routines that read data elements from */ /* a FITS image or table, with signed char (signed byte) data type. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffgpvsb(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ signed char nulval, /* I - value for undefined pixels */ signed char *array, /* O - array of values that are returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Undefined elements will be set equal to NULVAL, unless NULVAL=0 in which case no checking for undefined values will be performed. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { long row; char cdummy; int nullcheck = 1; signed char nullvalue; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ nullvalue = nulval; /* set local variable */ fits_read_compressed_pixels(fptr, TSBYTE, firstelem, nelem, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgclsb(fptr, 2, row, firstelem, nelem, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgpfsb(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ signed char *array, /* O - array of values that are returned */ char *nularray, /* O - array of null pixel flags */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any undefined pixels in the returned array will be set = 0 and the corresponding nularray value will be set = 1. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { long row; int nullcheck = 2; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_read_compressed_pixels(fptr, TSBYTE, firstelem, nelem, nullcheck, NULL, array, nularray, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgclsb(fptr, 2, row, firstelem, nelem, 1, 2, 0, array, nularray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffg2dsb(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ signed char nulval, /* set undefined pixels equal to this */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ signed char *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an entire 2-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any null values in the array will be set equal to the value of nulval, unless nulval = 0 in which case no null checking will be performed. */ { /* call the 3D reading routine, with the 3rd dimension = 1 */ ffg3dsb(fptr, group, nulval, ncols, naxis2, naxis1, naxis2, 1, array, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffg3dsb(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ signed char nulval, /* set undefined pixels equal to this */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG nrows, /* I - number of rows in each plane of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ LONGLONG naxis3, /* I - FITS image NAXIS3 value */ signed char *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an entire 3-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any null values in the array will be set equal to the value of nulval, unless nulval = 0 in which case no null checking will be performed. */ { long tablerow, ii, jj; LONGLONG nfits, narray; char cdummy; int nullcheck = 1; long inc[] = {1,1,1}; LONGLONG fpixel[] = {1,1,1}; LONGLONG lpixel[3]; signed char nullvalue; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ lpixel[0] = ncols; lpixel[1] = nrows; lpixel[2] = naxis3; nullvalue = nulval; /* set local variable */ fits_read_compressed_img(fptr, TSBYTE, fpixel, lpixel, inc, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ tablerow=maxvalue(1,group); if (ncols == naxis1 && nrows == naxis2) /* arrays have same size? */ { /* all the image pixels are contiguous, so read all at once */ ffgclsb(fptr, 2, tablerow, 1, naxis1 * naxis2 * naxis3, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } if (ncols < naxis1 || nrows < naxis2) return(*status = BAD_DIMEN); nfits = 1; /* next pixel in FITS image to read */ narray = 0; /* next pixel in output array to be filled */ /* loop over naxis3 planes in the data cube */ for (jj = 0; jj < naxis3; jj++) { /* loop over the naxis2 rows in the FITS image, */ /* reading naxis1 pixels to each row */ for (ii = 0; ii < naxis2; ii++) { if (ffgclsb(fptr, 2, tablerow, nfits, naxis1, 1, 1, nulval, &array[narray], &cdummy, anynul, status) > 0) return(*status); nfits += naxis1; narray += ncols; } narray += (nrows - naxis2) * ncols; } return(*status); } /*--------------------------------------------------------------------------*/ int ffgsvsb(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of the column to read (1 = 1st) */ int naxis, /* I - number of dimensions in the FITS array */ long *naxes, /* I - size of each dimension */ long *blc, /* I - 'bottom left corner' of the subsection */ long *trc, /* I - 'top right corner' of the subsection */ long *inc, /* I - increment to be applied in each dimension */ signed char nulval, /* I - value to set undefined pixels */ signed char *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read a subsection of data values from an image or a table column. This routine is set up to handle a maximum of nine dimensions. */ { long ii, i0, i1, i2, i3, i4, i5, i6, i7, i8, row, rstr, rstp, rinc; long str[9], stp[9], incr[9], dir[9]; long nelem, nultyp, ninc, numcol; LONGLONG felem, dsize[10], blcll[9], trcll[9]; int hdutype, anyf; char ldummy, msg[FLEN_ERRMSG]; int nullcheck = 1; signed char nullvalue; if (naxis < 1 || naxis > 9) { sprintf(msg, "NAXIS = %d in call to ffgsvsb is out of range", naxis); ffpmsg(msg); return(*status = BAD_DIMEN); } if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ for (ii=0; ii < naxis; ii++) { blcll[ii] = blc[ii]; trcll[ii] = trc[ii]; } nullvalue = nulval; /* set local variable */ fits_read_compressed_img(fptr, TSBYTE, blcll, trcll, inc, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* if this is a primary array, then the input COLNUM parameter should be interpreted as the row number, and we will alway read the image data from column 2 (any group parameters are in column 1). */ if (ffghdt(fptr, &hdutype, status) > 0) return(*status); if (hdutype == IMAGE_HDU) { /* this is a primary array, or image extension */ if (colnum == 0) { rstr = 1; rstp = 1; } else { rstr = colnum; rstp = colnum; } rinc = 1; numcol = 2; } else { /* this is a table, so the row info is in the (naxis+1) elements */ rstr = blc[naxis]; rstp = trc[naxis]; rinc = inc[naxis]; numcol = colnum; } nultyp = 1; if (anynul) *anynul = FALSE; i0 = 0; for (ii = 0; ii < 9; ii++) { str[ii] = 1; stp[ii] = 1; incr[ii] = 1; dsize[ii] = 1; dir[ii] = 1; } for (ii = 0; ii < naxis; ii++) { if (trc[ii] < blc[ii]) { if (hdutype == IMAGE_HDU) { dir[ii] = -1; } else { sprintf(msg, "ffgsvsb: illegal range specified for axis %ld", ii + 1); ffpmsg(msg); return(*status = BAD_PIX_NUM); } } str[ii] = blc[ii]; stp[ii] = trc[ii]; incr[ii] = inc[ii]; dsize[ii + 1] = dsize[ii] * naxes[ii]; dsize[ii] = dsize[ii] * dir[ii]; } dsize[naxis] = dsize[naxis] * dir[naxis]; if (naxis == 1 && naxes[0] == 1) { /* This is not a vector column, so read all the rows at once */ nelem = (rstp - rstr) / rinc + 1; ninc = rinc; rstp = rstr; } else { /* have to read each row individually, in all dimensions */ nelem = (stp[0]*dir[0] - str[0]*dir[0]) / inc[0] + 1; ninc = incr[0] * dir[0]; } for (row = rstr; row <= rstp; row += rinc) { for (i8 = str[8]*dir[8]; i8 <= stp[8]*dir[8]; i8 += incr[8]) { for (i7 = str[7]*dir[7]; i7 <= stp[7]*dir[7]; i7 += incr[7]) { for (i6 = str[6]*dir[6]; i6 <= stp[6]*dir[6]; i6 += incr[6]) { for (i5 = str[5]*dir[5]; i5 <= stp[5]*dir[5]; i5 += incr[5]) { for (i4 = str[4]*dir[4]; i4 <= stp[4]*dir[4]; i4 += incr[4]) { for (i3 = str[3]*dir[3]; i3 <= stp[3]*dir[3]; i3 += incr[3]) { for (i2 = str[2]*dir[2]; i2 <= stp[2]*dir[2]; i2 += incr[2]) { for (i1 = str[1]*dir[1]; i1 <= stp[1]*dir[1]; i1 += incr[1]) { felem=str[0] + (i1 - dir[1]) * dsize[1] + (i2 - dir[2]) * dsize[2] + (i3 - dir[3]) * dsize[3] + (i4 - dir[4]) * dsize[4] + (i5 - dir[5]) * dsize[5] + (i6 - dir[6]) * dsize[6] + (i7 - dir[7]) * dsize[7] + (i8 - dir[8]) * dsize[8]; if ( ffgclsb(fptr, numcol, row, felem, nelem, ninc, nultyp, nulval, &array[i0], &ldummy, &anyf, status) > 0) return(*status); if (anyf && anynul) *anynul = TRUE; i0 += nelem; } } } } } } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffgsfsb(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of the column to read (1 = 1st) */ int naxis, /* I - number of dimensions in the FITS array */ long *naxes, /* I - size of each dimension */ long *blc, /* I - 'bottom left corner' of the subsection */ long *trc, /* I - 'top right corner' of the subsection */ long *inc, /* I - increment to be applied in each dimension */ signed char *array, /* O - array to be filled and returned */ char *flagval, /* O - set to 1 if corresponding value is null */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read a subsection of data values from an image or a table column. This routine is set up to handle a maximum of nine dimensions. */ { long ii,i0, i1,i2,i3,i4,i5,i6,i7,i8,row,rstr,rstp,rinc; long str[9],stp[9],incr[9],dsize[10]; LONGLONG blcll[9], trcll[9]; long felem, nelem, nultyp, ninc, numcol; int hdutype, anyf; signed char nulval = 0; char msg[FLEN_ERRMSG]; int nullcheck = 2; if (naxis < 1 || naxis > 9) { sprintf(msg, "NAXIS = %d in call to ffgsvsb is out of range", naxis); ffpmsg(msg); return(*status = BAD_DIMEN); } if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ for (ii=0; ii < naxis; ii++) { blcll[ii] = blc[ii]; trcll[ii] = trc[ii]; } fits_read_compressed_img(fptr, TSBYTE, blcll, trcll, inc, nullcheck, NULL, array, flagval, anynul, status); return(*status); } /* if this is a primary array, then the input COLNUM parameter should be interpreted as the row number, and we will alway read the image data from column 2 (any group parameters are in column 1). */ if (ffghdt(fptr, &hdutype, status) > 0) return(*status); if (hdutype == IMAGE_HDU) { /* this is a primary array, or image extension */ if (colnum == 0) { rstr = 1; rstp = 1; } else { rstr = colnum; rstp = colnum; } rinc = 1; numcol = 2; } else { /* this is a table, so the row info is in the (naxis+1) elements */ rstr = blc[naxis]; rstp = trc[naxis]; rinc = inc[naxis]; numcol = colnum; } nultyp = 2; if (anynul) *anynul = FALSE; i0 = 0; for (ii = 0; ii < 9; ii++) { str[ii] = 1; stp[ii] = 1; incr[ii] = 1; dsize[ii] = 1; } for (ii = 0; ii < naxis; ii++) { if (trc[ii] < blc[ii]) { sprintf(msg, "ffgsvsb: illegal range specified for axis %ld", ii + 1); ffpmsg(msg); return(*status = BAD_PIX_NUM); } str[ii] = blc[ii]; stp[ii] = trc[ii]; incr[ii] = inc[ii]; dsize[ii + 1] = dsize[ii] * naxes[ii]; } if (naxis == 1 && naxes[0] == 1) { /* This is not a vector column, so read all the rows at once */ nelem = (rstp - rstr) / rinc + 1; ninc = rinc; rstp = rstr; } else { /* have to read each row individually, in all dimensions */ nelem = (stp[0] - str[0]) / inc[0] + 1; ninc = incr[0]; } for (row = rstr; row <= rstp; row += rinc) { for (i8 = str[8]; i8 <= stp[8]; i8 += incr[8]) { for (i7 = str[7]; i7 <= stp[7]; i7 += incr[7]) { for (i6 = str[6]; i6 <= stp[6]; i6 += incr[6]) { for (i5 = str[5]; i5 <= stp[5]; i5 += incr[5]) { for (i4 = str[4]; i4 <= stp[4]; i4 += incr[4]) { for (i3 = str[3]; i3 <= stp[3]; i3 += incr[3]) { for (i2 = str[2]; i2 <= stp[2]; i2 += incr[2]) { for (i1 = str[1]; i1 <= stp[1]; i1 += incr[1]) { felem=str[0] + (i1 - 1) * dsize[1] + (i2 - 1) * dsize[2] + (i3 - 1) * dsize[3] + (i4 - 1) * dsize[4] + (i5 - 1) * dsize[5] + (i6 - 1) * dsize[6] + (i7 - 1) * dsize[7] + (i8 - 1) * dsize[8]; if ( ffgclsb(fptr, numcol, row, felem, nelem, ninc, nultyp, nulval, &array[i0], &flagval[i0], &anyf, status) > 0) return(*status); if (anyf && anynul) *anynul = TRUE; i0 += nelem; } } } } } } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffggpsb( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ long firstelem, /* I - first vector element to read (1 = 1st) */ long nelem, /* I - number of values to read */ signed char *array, /* O - array of values that are returned */ int *status) /* IO - error status */ /* Read an array of group parameters from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). */ { long row; int idummy; char cdummy; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgclsb(fptr, 1, row, firstelem, nelem, 1, 1, 0, array, &cdummy, &idummy, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcvsb(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ signed char nulval, /* I - value for null pixels */ signed char *array, /* O - array of values that are read */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Any undefined pixels will be set equal to the value of 'nulval' unless nulval = 0 in which case no checks for undefined pixels will be made. */ { char cdummy; ffgclsb(fptr, colnum, firstrow, firstelem, nelem, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcfsb(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ signed char *array, /* O - array of values that are read */ char *nularray, /* O - array of flags: 1 if null pixel; else 0 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Nularray will be set = 1 if the corresponding array pixel is undefined, otherwise nularray will = 0. */ { signed char dummy = 0; ffgclsb(fptr, colnum, firstrow, firstelem, nelem, 1, 2, dummy, array, nularray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgclsb(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ long elemincre, /* I - pixel increment; e.g., 2 = every other */ int nultyp, /* I - null value handling code: */ /* 1: set undefined pixels = nulval */ /* 2: set nularray=1 for undefined pixels */ signed char nulval, /* I - value for null pixels if nultyp = 1 */ signed char *array, /* O - array of values that are read */ char *nularray, /* O - array of flags = 1 if nultyp = 2 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. The column number may refer to a real column in an ASCII or binary table, or it may refer be a virtual column in a 1 or more grouped FITS primary array or image extension. FITSIO treats a primary array as a binary table with 2 vector columns: the first column contains the group parameters (often with length = 0) and the second column contains the array of image pixels. Each row of the table represents a group in the case of multigroup FITS images. The output array of values will be converted from the datatype of the column and will be scaled by the FITS TSCALn and TZEROn values if necessary. */ { double scale, zero, power = 1., dtemp; int tcode, maxelem, hdutype, xcode, decimals; long twidth, incre; long ii, xwidth, ntodo; int nulcheck, readcheck = 0; LONGLONG repeat, startpos, elemnum, readptr, tnull; LONGLONG rowlen, rownum, remain, next, rowincre; char tform[20]; char message[81]; char snull[20]; /* the FITS null value if reading from ASCII table */ double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */ void *buffer; union u_tag { char charval; signed char scharval; } u; if (*status > 0 || nelem == 0) /* inherit input status value if > 0 */ return(*status); buffer = cbuff; if (anynul) *anynul = 0; if (nultyp == 2) memset(nularray, 0, (size_t) nelem); /* initialize nullarray */ /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if (elemincre < 0) readcheck = -1; /* don't do range checking in this case */ ffgcprll( fptr, colnum, firstrow, firstelem, nelem, readcheck, &scale, &zero, tform, &twidth, &tcode, &maxelem, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status); /* special case: read column of T/F logicals */ if (tcode == TLOGICAL && elemincre == 1) { u.scharval = nulval; ffgcll(fptr, colnum, firstrow, firstelem, nelem, nultyp, u.charval, (char *) array, nularray, anynul, status); return(*status); } if (strchr(tform,'A') != NULL) { if (*status == BAD_ELEM_NUM) { /* ignore this error message */ *status = 0; ffcmsg(); /* clear error stack */ } /* interpret a 'A' ASCII column as a 'B' byte column ('8A' == '8B') */ /* This is an undocumented 'feature' in CFITSIO */ /* we have to reset some of the values returned by ffgcpr */ tcode = TBYTE; incre = 1; /* each element is 1 byte wide */ repeat = twidth; /* total no. of chars in the col */ twidth = 1; /* width of each element */ scale = 1.0; /* no scaling */ zero = 0.0; tnull = NULL_UNDEFINED; /* don't test for nulls */ maxelem = DBUFFSIZE; } if (*status > 0) return(*status); incre *= elemincre; /* multiply incre to just get every nth pixel */ if (tcode == TSTRING && hdutype == ASCII_TBL) /* setup for ASCII tables */ { /* get the number of implied decimal places if no explicit decmal point */ ffasfm(tform, &xcode, &xwidth, &decimals, status); for(ii = 0; ii < decimals; ii++) power *= 10.; } /*------------------------------------------------------------------*/ /* Decide whether to check for null values in the input FITS file: */ /*------------------------------------------------------------------*/ nulcheck = nultyp; /* by default, check for null values in the FITS file */ if (nultyp == 1 && nulval == 0) nulcheck = 0; /* calling routine does not want to check for nulls */ else if (tcode%10 == 1 && /* if reading an integer column, and */ tnull == NULL_UNDEFINED) /* if a null value is not defined, */ nulcheck = 0; /* then do not check for null values. */ else if (tcode == TSHORT && (tnull > SHRT_MAX || tnull < SHRT_MIN) ) nulcheck = 0; /* Impossible null value */ else if (tcode == TBYTE && (tnull > 255 || tnull < 0) ) nulcheck = 0; /* Impossible null value */ else if (tcode == TSTRING && snull[0] == ASCII_NULL_UNDEFINED) nulcheck = 0; /*---------------------------------------------------------------------*/ /* Now read the pixels from the FITS column. If the column does not */ /* have the same datatype as the output array, then we have to read */ /* the raw values into a temporary buffer (of limited size). In */ /* the case of a vector colum read only 1 vector of values at a time */ /* then skip to the next row if more values need to be read. */ /* After reading the raw values, then call the fffXXYY routine to (1) */ /* test for undefined values, (2) convert the datatype if necessary, */ /* and (3) scale the values by the FITS TSCALn and TZEROn linear */ /* scaling parameters. */ /*---------------------------------------------------------------------*/ remain = nelem; /* remaining number of values to read */ next = 0; /* next element in array to be read */ rownum = 0; /* row number, relative to firstrow */ while (remain) { /* limit the number of pixels to read at one time to the number that will fit in the buffer or to the number of pixels that remain in the current vector, which ever is smaller. */ ntodo = (long) minvalue(remain, maxelem); if (elemincre >= 0) { ntodo = (long) minvalue(ntodo, ((repeat - elemnum - 1)/elemincre +1)); } else { ntodo = (long) minvalue(ntodo, (elemnum/(-elemincre) +1)); } readptr = startpos + (rownum * rowlen) + (elemnum * (incre / elemincre)); switch (tcode) { case (TBYTE): ffgi1b(fptr, readptr, ntodo, incre, (unsigned char *) &array[next], status); fffi1s1((unsigned char *)&array[next], ntodo, scale, zero, nulcheck, (unsigned char) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TSHORT): ffgi2b(fptr, readptr, ntodo, incre, (short *) buffer, status); fffi2s1((short *) buffer, ntodo, scale, zero, nulcheck, (short) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TLONG): ffgi4b(fptr, readptr, ntodo, incre, (INT32BIT *) buffer, status); fffi4s1((INT32BIT *) buffer, ntodo, scale, zero, nulcheck, (INT32BIT) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TLONGLONG): ffgi8b(fptr, readptr, ntodo, incre, (long *) buffer, status); fffi8s1( (LONGLONG *) buffer, ntodo, scale, zero, nulcheck, tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TFLOAT): ffgr4b(fptr, readptr, ntodo, incre, (float *) buffer, status); fffr4s1((float *) buffer, ntodo, scale, zero, nulcheck, nulval, &nularray[next], anynul, &array[next], status); break; case (TDOUBLE): ffgr8b(fptr, readptr, ntodo, incre, (double *) buffer, status); fffr8s1((double *) buffer, ntodo, scale, zero, nulcheck, nulval, &nularray[next], anynul, &array[next], status); break; case (TSTRING): ffmbyt(fptr, readptr, REPORT_EOF, status); if (incre == twidth) /* contiguous bytes */ ffgbyt(fptr, ntodo * twidth, buffer, status); else ffgbytoff(fptr, twidth, ntodo, incre - twidth, buffer, status); /* interpret the string as an ASCII formated number */ fffstrs1((char *) buffer, ntodo, scale, zero, twidth, power, nulcheck, snull, nulval, &nularray[next], anynul, &array[next], status); break; default: /* error trap for invalid column format */ sprintf(message, "Cannot read bytes from column %d which has format %s", colnum, tform); ffpmsg(message); if (hdutype == ASCII_TBL) return(*status = BAD_ATABLE_FORMAT); else return(*status = BAD_BTABLE_FORMAT); } /* End of switch block */ /*-------------------------*/ /* Check for fatal error */ /*-------------------------*/ if (*status > 0) /* test for error during previous read operation */ { dtemp = (double) next; if (hdutype > 0) sprintf(message, "Error reading elements %.0f thru %.0f from column %d (ffgclsb).", dtemp+1., dtemp+ntodo, colnum); else sprintf(message, "Error reading elements %.0f thru %.0f from image (ffgclsb).", dtemp+1., dtemp+ntodo); ffpmsg(message); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain -= ntodo; if (remain) { next += ntodo; elemnum = elemnum + (ntodo * elemincre); if (elemnum >= repeat) /* completed a row; start on later row */ { rowincre = elemnum / repeat; rownum += rowincre; elemnum = elemnum - (rowincre * repeat); } else if (elemnum < 0) /* completed a row; start on a previous row */ { rowincre = (-elemnum - 1) / repeat + 1; rownum -= rowincre; elemnum = (rowincre * repeat) + elemnum; } } } /* End of main while Loop */ /*--------------------------------*/ /* check for numerical overflow */ /*--------------------------------*/ if (*status == OVERFLOW_ERR) { ffpmsg( "Numerical overflow during type conversion while reading FITS data."); *status = NUM_OVERFLOW; } return(*status); } /*--------------------------------------------------------------------------*/ int fffi1s1(unsigned char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ unsigned char tnull, /* I - value of FITS TNULLn keyword if any */ signed char nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ signed char *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == -128.) { /* Instead of subtracting 128, it is more efficient */ /* to just flip the sign bit with the XOR operator */ for (ii = 0; ii < ntodo; ii++) output[ii] = ( *(signed char *) &input[ii] ) ^ 0x80; } else if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] > 127) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) input[ii]; /* copy input */ } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DSCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (dvalue > DSCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == -128.) { /* Instead of subtracting 128, it is more efficient */ /* to just flip the sign bit with the XOR operator */ for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = ( *(signed char *) &input[ii] ) ^ 0x80; } } else if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = (signed char) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DSCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (dvalue > DSCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi2s1(short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ short tnull, /* I - value of FITS TNULLn keyword if any */ signed char nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ signed char *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < -128) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (input[ii] > 127) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DSCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (dvalue > DSCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { if (input[ii] < -128) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (input[ii] > 127) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DSCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (dvalue > DSCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi4s1(INT32BIT *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ INT32BIT tnull, /* I - value of FITS TNULLn keyword if any */ signed char nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ signed char *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < -128) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (input[ii] > 127) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DSCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (dvalue > DSCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { if (input[ii] < -128) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (input[ii] > 127) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DSCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (dvalue > DSCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi8s1(LONGLONG *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ LONGLONG tnull, /* I - value of FITS TNULLn keyword if any */ signed char nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ signed char *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < -128) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (input[ii] > 127) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DSCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (dvalue > DSCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { if (input[ii] < -128) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (input[ii] > 127) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DSCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (dvalue > DSCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffr4s1(float *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ signed char nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ signed char *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to NaN. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; short *sptr, iret; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < DSCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (input[ii] > DSCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DSCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (dvalue > DSCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) dvalue; } } } else /* must check for null values */ { sptr = (short *) input; #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS sptr++; /* point to MSBs */ #endif if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++, sptr += 2) { /* use redundant boolean logic in following statement */ /* to suppress irritating Borland compiler warning message */ if (0 != (iret = fnan(*sptr) ) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ output[ii] = 0; } else { if (input[ii] < DSCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (input[ii] > DSCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++, sptr += 2) { if (0 != (iret = fnan(*sptr) ) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ { if (zero < DSCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (zero > DSCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) zero; } } else { dvalue = input[ii] * scale + zero; if (dvalue < DSCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (dvalue > DSCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffr8s1(double *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ signed char nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ signed char *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to NaN. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; short *sptr, iret; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < DSCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (input[ii] > DSCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DSCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (dvalue > DSCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) dvalue; } } } else /* must check for null values */ { sptr = (short *) input; #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS sptr += 3; /* point to MSBs */ #endif if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++, sptr += 4) { if (0 != (iret = dnan(*sptr)) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ output[ii] = 0; } else { if (input[ii] < DSCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (input[ii] > DSCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++, sptr += 4) { if (0 != (iret = dnan(*sptr)) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ { if (zero < DSCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (zero > DSCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) zero; } } else { dvalue = input[ii] * scale + zero; if (dvalue < DSCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (dvalue > DSCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffstrs1(char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ long twidth, /* I - width of each substring of chars */ double implipower, /* I - power of 10 of implied decimal */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ char *snull, /* I - value of FITS null string, if any */ signed char nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ signed char *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to snull. If nullcheck= 0, then no special checking for nulls is performed. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { int nullen; long ii; double dvalue; char *cstring, message[81]; char *cptr, *tpos; char tempstore, chrzero = '0'; double val, power; int exponent, sign, esign, decpt; nullen = strlen(snull); cptr = input; /* pointer to start of input string */ for (ii = 0; ii < ntodo; ii++) { cstring = cptr; /* temporarily insert a null terminator at end of the string */ tpos = cptr + twidth; tempstore = *tpos; *tpos = 0; /* check if null value is defined, and if the */ /* column string is identical to the null string */ if (snull[0] != ASCII_NULL_UNDEFINED && !strncmp(snull, cptr, nullen) ) { if (nullcheck) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } cptr += twidth; } else { /* value is not the null value, so decode it */ /* remove any embedded blank characters from the string */ decpt = 0; sign = 1; val = 0.; power = 1.; exponent = 0; esign = 1; while (*cptr == ' ') /* skip leading blanks */ cptr++; if (*cptr == '-' || *cptr == '+') /* check for leading sign */ { if (*cptr == '-') sign = -1; cptr++; while (*cptr == ' ') /* skip blanks between sign and value */ cptr++; } while (*cptr >= '0' && *cptr <= '9') { val = val * 10. + *cptr - chrzero; /* accumulate the value */ cptr++; while (*cptr == ' ') /* skip embedded blanks in the value */ cptr++; } if (*cptr == '.' || *cptr == ',') /* check for decimal point */ { decpt = 1; cptr++; while (*cptr == ' ') /* skip any blanks */ cptr++; while (*cptr >= '0' && *cptr <= '9') { val = val * 10. + *cptr - chrzero; /* accumulate the value */ power = power * 10.; cptr++; while (*cptr == ' ') /* skip embedded blanks in the value */ cptr++; } } if (*cptr == 'E' || *cptr == 'D') /* check for exponent */ { cptr++; while (*cptr == ' ') /* skip blanks */ cptr++; if (*cptr == '-' || *cptr == '+') /* check for exponent sign */ { if (*cptr == '-') esign = -1; cptr++; while (*cptr == ' ') /* skip blanks between sign and exp */ cptr++; } while (*cptr >= '0' && *cptr <= '9') { exponent = exponent * 10 + *cptr - chrzero; /* accumulate exp */ cptr++; while (*cptr == ' ') /* skip embedded blanks */ cptr++; } } if (*cptr != 0) /* should end up at the null terminator */ { sprintf(message, "Cannot read number from ASCII table"); ffpmsg(message); sprintf(message, "Column field = %s.", cstring); ffpmsg(message); /* restore the char that was overwritten by the null */ *tpos = tempstore; return(*status = BAD_C2D); } if (!decpt) /* if no explicit decimal, use implied */ power = implipower; dvalue = (sign * val / power) * pow(10., (double) (esign * exponent)); dvalue = dvalue * scale + zero; /* apply the scaling */ if (dvalue < DSCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = -128; } else if (dvalue > DSCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = 127; } else output[ii] = (signed char) dvalue; } /* restore the char that was overwritten by the null */ *tpos = tempstore; } return(*status); } healpy-1.8.1/cfitsio/imcompress.c0000654000175000017530000127366012272000775017421 0ustar zoncaplanck00000000000000# include # include # include # include # include # include # include "fitsio2.h" #define NULL_VALUE -2147483647 /* value used to represent undefined pixels */ #define ZERO_VALUE -2147483646 /* value used to represent zero-valued pixels */ /* nearest integer function */ # define NINT(x) ((x >= 0.) ? (int) (x + 0.5) : (int) (x - 0.5)) /* special quantize level value indicates that floating point image pixels */ /* should not be quantized and instead losslessly compressed (with GZIP) */ #define NO_QUANTIZE 9999 /* string array for storing the individual column compression stats */ char results[999][30]; float *fits_rand_value = 0; int imcomp_write_nocompress_tile(fitsfile *outfptr, long row, int datatype, void *tiledata, long tilelen, int nullcheck, void *nullflagval, int *status); int imcomp_convert_tile_tshort(fitsfile *outfptr, void *tiledata, long tilelen, int nullcheck, void *nullflagval, int nullval, int zbitpix, double scale, double zero, double actual_bzero, int *intlength, int *status); int imcomp_convert_tile_tushort(fitsfile *outfptr, void *tiledata, long tilelen, int nullcheck, void *nullflagval, int nullval, int zbitpix, double scale, double zero, int *intlength, int *status); int imcomp_convert_tile_tint(fitsfile *outfptr, void *tiledata, long tilelen, int nullcheck, void *nullflagval, int nullval, int zbitpix, double scale, double zero, int *intlength, int *status); int imcomp_convert_tile_tuint(fitsfile *outfptr, void *tiledata, long tilelen, int nullcheck, void *nullflagval, int nullval, int zbitpix, double scale, double zero, int *intlength, int *status); int imcomp_convert_tile_tbyte(fitsfile *outfptr, void *tiledata, long tilelen, int nullcheck, void *nullflagval, int nullval, int zbitpix, double scale, double zero, int *intlength, int *status); int imcomp_convert_tile_tsbyte(fitsfile *outfptr, void *tiledata, long tilelen, int nullcheck, void *nullflagval, int nullval, int zbitpix, double scale, double zero, int *intlength, int *status); int imcomp_convert_tile_tfloat(fitsfile *outfptr, long row, void *tiledata, long tilelen, long tilenx, long tileny, int nullcheck, void *nullflagval, int nullval, int zbitpix, double scale, double zero, int *intlength, int *flag, double *bscale, double *bzero,int *status); int imcomp_convert_tile_tdouble(fitsfile *outfptr, long row, void *tiledata, long tilelen, long tilenx, long tileny, int nullcheck, void *nullflagval, int nullval, int zbitpix, double scale, double zero, int *intlength, int *flag, double *bscale, double *bzero, int *status); static int unquantize_i1r4(long row, unsigned char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int dither_method, /* I - which subtractive dither method to use */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ unsigned char tnull, /* I - value of FITS TNULLn keyword if any */ float nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ float *output, /* O - array of converted pixels */ int *status); /* IO - error status */ static int unquantize_i2r4(long row, short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int dither_method, /* I - which subtractive dither method to use */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ short tnull, /* I - value of FITS TNULLn keyword if any */ float nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ float *output, /* O - array of converted pixels */ int *status); /* IO - error status */ static int unquantize_i4r4(long row, INT32BIT *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int dither_method, /* I - which subtractive dither method to use */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ INT32BIT tnull, /* I - value of FITS TNULLn keyword if any */ float nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ float *output, /* O - array of converted pixels */ int *status); /* IO - error status */ static int unquantize_i1r8(long row, unsigned char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int dither_method, /* I - which subtractive dither method to use */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ unsigned char tnull, /* I - value of FITS TNULLn keyword if any */ double nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ double *output, /* O - array of converted pixels */ int *status); /* IO - error status */ static int unquantize_i2r8(long row, short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int dither_method, /* I - which subtractive dither method to use */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ short tnull, /* I - value of FITS TNULLn keyword if any */ double nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ double *output, /* O - array of converted pixels */ int *status); /* IO - error status */ static int unquantize_i4r8(long row, INT32BIT *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int dither_method, /* I - which subtractive dither method to use */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ INT32BIT tnull, /* I - value of FITS TNULLn keyword if any */ double nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ double *output, /* O - array of converted pixels */ int *status); /* IO - error status */ static int imcomp_float2nan(float *indata, long tilelen, int *outdata, float nullflagval, int *status); static int imcomp_double2nan(double *indata, long tilelen, LONGLONG *outdata, double nullflagval, int *status); static int fits_read_write_compressed_img(fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the array to be returned */ LONGLONG *infpixel, /* I - 'bottom left corner' of the subsection */ LONGLONG *inlpixel, /* I - 'top right corner' of the subsection */ long *ininc, /* I - increment to be applied in each dimension */ int nullcheck, /* I - 0 for no null checking */ /* 1: set undefined pixels = nullval */ void *nullval, /* I - value for undefined pixels */ int *anynul, /* O - set to 1 if any values are null; else 0 */ fitsfile *outfptr, /* I - FITS file pointer */ int *status); static int fits_shuffle_8bytes(char *heap, LONGLONG length, int *status); static int fits_shuffle_4bytes(char *heap, LONGLONG length, int *status); static int fits_shuffle_2bytes(char *heap, LONGLONG length, int *status); static int fits_unshuffle_8bytes(char *heap, LONGLONG length, int *status); static int fits_unshuffle_4bytes(char *heap, LONGLONG length, int *status); static int fits_unshuffle_2bytes(char *heap, LONGLONG length, int *status); /* only used for diagnoitic purposes */ /* int fits_get_case(int *c1, int*c2, int*c3); */ /*---------------------------------------------------------------------------*/ int fits_init_randoms(void) { /* initialize an array of random numbers */ int ii; double a = 16807.0; double m = 2147483647.0; double temp, seed; FFLOCK; if (fits_rand_value) { FFUNLOCK; return(0); /* array is already initialized */ } /* allocate array for the random number sequence */ /* THIS MEMORY IS NEVER FREED */ fits_rand_value = calloc(N_RANDOM, sizeof(float)); if (!fits_rand_value) { FFUNLOCK; return(MEMORY_ALLOCATION); } /* We need a portable algorithm that anyone can use to generate this exact same sequence of random number. The C 'rand' function is not suitable because it is not available to Fortran or Java programmers. Instead, use a well known simple algorithm published here: "Random number generators: good ones are hard to find", Communications of the ACM, Volume 31 , Issue 10 (October 1988) Pages: 1192 - 1201 */ /* initialize the random numbers */ seed = 1; for (ii = 0; ii < N_RANDOM; ii++) { temp = a * seed; seed = temp -m * ((int) (temp / m) ); fits_rand_value[ii] = (float) (seed / m); } FFUNLOCK; /* IMPORTANT NOTE: the 10000th seed value must have the value 1043618065 if the algorithm has been implemented correctly */ if ( (int) seed != 1043618065) { ffpmsg("fits_init_randoms generated incorrect random number sequence"); return(1); } else { return(0); } } /*--------------------------------------------------------------------------*/ void bz_internal_error(int errcode) { /* external function declared by the bzip2 code in bzlib_private.h */ ffpmsg("bzip2 returned an internal error"); ffpmsg("This should never happen"); return; } /*--------------------------------------------------------------------------*/ int fits_set_compression_type(fitsfile *fptr, /* I - FITS file pointer */ int ctype, /* image compression type code; */ /* allowed values: RICE_1, GZIP_1, GZIP_2, PLIO_1, */ /* HCOMPRESS_1, BZIP2_1, and NOCOMPRESS */ int *status) /* IO - error status */ { /* This routine specifies the image compression algorithm that should be used when writing a FITS image. The image is divided into tiles, and each tile is compressed and stored in a row of at variable length binary table column. */ if (ctype != RICE_1 && ctype != GZIP_1 && ctype != GZIP_2 && ctype != PLIO_1 && ctype != HCOMPRESS_1 && ctype != BZIP2_1 && ctype != NOCOMPRESS && ctype != 0) { ffpmsg("unknown compression algorithm (fits_set_compression_type)"); *status = DATA_COMPRESSION_ERR; } else { (fptr->Fptr)->request_compress_type = ctype; } return(*status); } /*--------------------------------------------------------------------------*/ int fits_set_tile_dim(fitsfile *fptr, /* I - FITS file pointer */ int ndim, /* number of dimensions in the compressed image */ long *dims, /* size of image compression tile in each dimension */ /* default tile size = (NAXIS1, 1, 1, ...) */ int *status) /* IO - error status */ { /* This routine specifies the size (dimension) of the image compression tiles that should be used when writing a FITS image. The image is divided into tiles, and each tile is compressed and stored in a row of at variable length binary table column. */ int ii; if (ndim < 0 || ndim > MAX_COMPRESS_DIM) { *status = BAD_DIMEN; ffpmsg("illegal number of tile dimensions (fits_set_tile_dim)"); return(*status); } for (ii = 0; ii < ndim; ii++) { (fptr->Fptr)->request_tilesize[ii] = dims[ii]; } return(*status); } /*--------------------------------------------------------------------------*/ int fits_set_quantize_level(fitsfile *fptr, /* I - FITS file pointer */ float qlevel, /* floating point quantization level */ int *status) /* IO - error status */ { /* This routine specifies the value of the quantization level, q, that should be used when compressing floating point images. The image is divided into tiles, and each tile is compressed and stored in a row of at variable length binary table column. */ if (qlevel == 0.) { /* this means don't quantize the floating point values. Instead, */ /* the floating point values will be losslessly compressed */ (fptr->Fptr)->request_quantize_level = NO_QUANTIZE; } else { (fptr->Fptr)->request_quantize_level = qlevel; } return(*status); } /*--------------------------------------------------------------------------*/ int fits_set_quantize_method(fitsfile *fptr, /* I - FITS file pointer */ int method, /* quantization method */ int *status) /* IO - error status */ { /* This routine specifies what type of dithering (randomization) should be performed when quantizing floating point images to integer prior to compression. A value of -1 means do no dithering. A value of 0 means use the default SUBTRACTIVE_DITHER_1 (which is equivalent to dither = 1). A value of 2 means use SUBTRACTIVE_DITHER_2. */ if (method < -1 || method > 2) { ffpmsg("illegal dithering value (fits_set_quantize_method)"); *status = DATA_COMPRESSION_ERR; } else { if (method == 0) method = 1; (fptr->Fptr)->request_quantize_method = method; } return(*status); } /*--------------------------------------------------------------------------*/ int fits_set_quantize_dither(fitsfile *fptr, /* I - FITS file pointer */ int dither, /* dither type */ int *status) /* IO - error status */ { /* the name of this routine has changed. This is kept here only for backwards compatibility for any software that may be calling the old routine. */ fits_set_quantize_method(fptr, dither, status); return(*status); } /*--------------------------------------------------------------------------*/ int fits_set_dither_seed(fitsfile *fptr, /* I - FITS file pointer */ int seed, /* random dithering seed value (1 to 10000) */ int *status) /* IO - error status */ { /* This routine specifies the value of the offset that should be applied when calculating the random dithering when quantizing floating point iamges. A random offset should be applied to each image to avoid quantization effects when taking the difference of 2 images, or co-adding a set of images. Without this random offset, the corresponding pixel in every image will have exactly the same dithering. offset = 0 means use the default random dithering based on system time offset = negative means randomly chose dithering based on 1st tile checksum offset = [1 - 10000] means use that particular dithering pattern */ /* if positive, ensure that the value is in the range 1 to 10000 */ if (seed > 10000) { ffpmsg("illegal dithering seed value (fits_set_dither_seed)"); *status = DATA_COMPRESSION_ERR; } else { (fptr->Fptr)->request_dither_seed = seed; } return(*status); } /*--------------------------------------------------------------------------*/ int fits_set_dither_offset(fitsfile *fptr, /* I - FITS file pointer */ int offset, /* random dithering offset value (1 to 10000) */ int *status) /* IO - error status */ { /* The name of this routine has changed. This is kept just for backwards compatibility with any software that calls the old name */ fits_set_dither_seed(fptr, offset, status); return(*status); } /*--------------------------------------------------------------------------*/ int fits_set_noise_bits(fitsfile *fptr, /* I - FITS file pointer */ int noisebits, /* noise_bits parameter value */ /* (default = 4) */ int *status) /* IO - error status */ { /* ******************************************************************** ******************************************************************** THIS ROUTINE IS PROVIDED ONLY FOR BACKWARDS COMPATIBILITY; ALL NEW SOFTWARE SHOULD CALL fits_set_quantize_level INSTEAD ******************************************************************** ******************************************************************** This routine specifies the value of the noice_bits parameter that should be used when compressing floating point images. The image is divided into tiles, and each tile is compressed and stored in a row of at variable length binary table column. Feb 2008: the "noisebits" parameter has been replaced with the more general "quantize level" parameter. */ float qlevel; if (noisebits < 1 || noisebits > 16) { *status = DATA_COMPRESSION_ERR; ffpmsg("illegal number of noise bits (fits_set_noise_bits)"); return(*status); } qlevel = (float) pow (2., (double)noisebits); fits_set_quantize_level(fptr, qlevel, status); return(*status); } /*--------------------------------------------------------------------------*/ int fits_set_hcomp_scale(fitsfile *fptr, /* I - FITS file pointer */ float scale, /* hcompress scale parameter value */ /* (default = 0.) */ int *status) /* IO - error status */ { /* This routine specifies the value of the hcompress scale parameter. */ (fptr->Fptr)->request_hcomp_scale = scale; return(*status); } /*--------------------------------------------------------------------------*/ int fits_set_hcomp_smooth(fitsfile *fptr, /* I - FITS file pointer */ int smooth, /* hcompress smooth parameter value */ /* if scale > 1 and smooth != 0, then */ /* the image will be smoothed when it is */ /* decompressed to remove some of the */ /* 'blockiness' in the image produced */ /* by the lossy compression */ int *status) /* IO - error status */ { /* This routine specifies the value of the hcompress scale parameter. */ (fptr->Fptr)->request_hcomp_smooth = smooth; return(*status); } /*--------------------------------------------------------------------------*/ int fits_set_lossy_int(fitsfile *fptr, /* I - FITS file pointer */ int lossy_int, /* I - True (!= 0) or False (0) */ int *status) /* IO - error status */ { /* This routine specifies whether images with integer pixel values should quantized and compressed the same way float images are compressed. The default is to not do this, and instead apply a lossless compression algorithm to integer images. */ (fptr->Fptr)->request_lossy_int_compress = lossy_int; return(*status); } /*--------------------------------------------------------------------------*/ int fits_set_huge_hdu(fitsfile *fptr, /* I - FITS file pointer */ int huge, /* I - True (!= 0) or False (0) */ int *status) /* IO - error status */ { /* This routine specifies whether the HDU that is being compressed is so large (i.e., > 4 GB) that the 'Q' type variable length array columns should be used rather than the normal 'P' type. The allows the heap pointers to be stored as 64-bit quantities, rather than just 32-bits. */ (fptr->Fptr)->request_huge_hdu = huge; return(*status); } /*--------------------------------------------------------------------------*/ int fits_get_compression_type(fitsfile *fptr, /* I - FITS file pointer */ int *ctype, /* image compression type code; */ /* allowed values: */ /* RICE_1, GZIP_1, GZIP_2, PLIO_1, HCOMPRESS_1, BZIP2_1 */ int *status) /* IO - error status */ { /* This routine returns the image compression algorithm that should be used when writing a FITS image. The image is divided into tiles, and each tile is compressed and stored in a row of at variable length binary table column. */ *ctype = (fptr->Fptr)->request_compress_type; if (*ctype != RICE_1 && *ctype != GZIP_1 && *ctype != GZIP_2 && *ctype != PLIO_1 && *ctype != HCOMPRESS_1 && *ctype != BZIP2_1 && *ctype != NOCOMPRESS && *ctype != 0 ) { ffpmsg("unknown compression algorithm (fits_get_compression_type)"); *status = DATA_COMPRESSION_ERR; } return(*status); } /*--------------------------------------------------------------------------*/ int fits_get_tile_dim(fitsfile *fptr, /* I - FITS file pointer */ int ndim, /* number of dimensions in the compressed image */ long *dims, /* size of image compression tile in each dimension */ /* default tile size = (NAXIS1, 1, 1, ...) */ int *status) /* IO - error status */ { /* This routine returns the size (dimension) of the image compression tiles that should be used when writing a FITS image. The image is divided into tiles, and each tile is compressed and stored in a row of at variable length binary table column. */ int ii; if (ndim < 0 || ndim > MAX_COMPRESS_DIM) { *status = BAD_DIMEN; ffpmsg("illegal number of tile dimensions (fits_get_tile_dim)"); return(*status); } for (ii = 0; ii < ndim; ii++) { dims[ii] = (fptr->Fptr)->request_tilesize[ii]; } return(*status); } /*--------------------------------------------------------------------------*/ int fits_unset_compression_param( fitsfile *fptr, int *status) { int ii; (fptr->Fptr)->compress_type = 0; (fptr->Fptr)->quantize_level = 0; (fptr->Fptr)->quantize_method = 0; (fptr->Fptr)->dither_seed = 0; (fptr->Fptr)->hcomp_scale = 0; for (ii = 0; ii < MAX_COMPRESS_DIM; ii++) { (fptr->Fptr)->tilesize[ii] = 0; } return(*status); } /*--------------------------------------------------------------------------*/ int fits_unset_compression_request( fitsfile *fptr, int *status) { int ii; (fptr->Fptr)->request_compress_type = 0; (fptr->Fptr)->request_quantize_level = 0; (fptr->Fptr)->request_quantize_method = 0; (fptr->Fptr)->request_dither_seed = 0; (fptr->Fptr)->request_hcomp_scale = 0; (fptr->Fptr)->request_lossy_int_compress = 0; (fptr->Fptr)->request_huge_hdu = 0; for (ii = 0; ii < MAX_COMPRESS_DIM; ii++) { (fptr->Fptr)->request_tilesize[ii] = 0; } return(*status); } /*--------------------------------------------------------------------------*/ int fits_set_compression_pref( fitsfile *infptr, fitsfile *outfptr, int *status) { /* Set the preference for various compression options, based on keywords in the input file that provide guidance about how the HDU should be compressed when written to the output file. */ int ii, naxis, nkeys, comptype; int ivalue, tstatus; long tiledim[6]= {1,1,1,1,1,1}; char card[FLEN_CARD], value[FLEN_VALUE]; double qvalue; float hscale; LONGLONG datastart, dataend; if (*status > 0) return(*status); /* check the size of the HDU that is to be compressed */ fits_get_hduaddrll(infptr, NULL, &datastart, &dataend, status); if ( (LONGLONG)(dataend - datastart) > UINT32_MAX) { /* use 64-bit '1Q' variable length columns instead of '1P' columns */ /* for large files, in case the heap size becomes larger than 2**32 bytes*/ fits_set_huge_hdu(outfptr, 1, status); } fits_get_hdrspace(infptr, &nkeys, NULL, status); /* look for a image compression directive keywords (begin with 'FZ') */ for (ii = 2; ii <= nkeys; ii++) { fits_read_record(infptr, ii, card, status); if (!strncmp(card, "FZ", 2) ){ /* get the keyword value string */ fits_parse_value(card, value, NULL, status); if (!strncmp(card+2, "ALGOR", 5) ) { /* set the desired compression algorithm */ /* allowed values: RICE_1, GZIP_1, GZIP_2, PLIO_1, */ /* HCOMPRESS_1, BZIP2_1, and NOCOMPRESS */ if (!strncasecmp(value, "'RICE_1", 7) ) { comptype = RICE_1; } else if (!strncasecmp(value, "'GZIP_1", 7) ) { comptype = GZIP_1; } else if (!strncasecmp(value, "'GZIP_2", 7) ) { comptype = GZIP_2; } else if (!strncasecmp(value, "'PLIO_1", 7) ) { comptype = PLIO_1; } else if (!strncasecmp(value, "'HCOMPRESS_1", 12) ) { comptype = HCOMPRESS_1; } else if (!strncasecmp(value, "'NONE", 5) ) { comptype = NOCOMPRESS; } else { ffpmsg("Unknown FZALGOR keyword compression algorithm:"); ffpmsg(value); return(*status = DATA_COMPRESSION_ERR); } fits_set_compression_type (outfptr, comptype, status); } else if (!strncmp(card+2, "TILE ", 6) ) { tstatus = 0; if (!strncasecmp(value, "'row", 4) ) { tiledim[0] = -1; } else if (!strncasecmp(value, "'whole", 6) ) { tiledim[0] = -1; tiledim[1] = -1; tiledim[2] = -1; } else { ffdtdm(infptr, value, 0,6, &naxis, tiledim, status); } /* set the desired tile size */ fits_set_tile_dim (outfptr, 6, tiledim, status); } else if (!strncmp(card+2, "QVALUE", 6) ) { /* set the desired Q quantization value */ qvalue = atof(value); fits_set_quantize_level (outfptr, (float) qvalue, status); } else if (!strncmp(card+2, "QMETHD", 6) ) { if (!strncasecmp(value, "'no_dither", 10) ) { ivalue = -1; /* just quantize, with no dithering */ } else if (!strncasecmp(value, "'subtractive_dither_1", 21) ) { ivalue = SUBTRACTIVE_DITHER_1; /* use subtractive dithering */ } else if (!strncasecmp(value, "'subtractive_dither_2", 21) ) { ivalue = SUBTRACTIVE_DITHER_2; /* dither, except preserve zero-valued pixels */ } else { ffpmsg("Unknown value for FZQUANT keyword: (set_compression_pref)"); ffpmsg(value); return(*status = DATA_COMPRESSION_ERR); } fits_set_quantize_method(outfptr, ivalue, status); } else if (!strncmp(card+2, "DTHRSD", 6) ) { if (!strncasecmp(value, "'checksum", 9) ) { ivalue = -1; /* use checksum of first tile */ } else if (!strncasecmp(value, "'clock", 6) ) { ivalue = 0; /* set dithering seed based on system clock */ } else { /* read integer value */ if (*value == '\'') ivalue = (int) atol(value+1); /* allow for leading quote character */ else ivalue = (int) atol(value); if (ivalue < 1 || ivalue > 10000) { ffpmsg("Invalid value for FZDTHRSD keyword: (set_compression_pref)"); ffpmsg(value); return(*status = DATA_COMPRESSION_ERR); } } /* set the desired dithering */ fits_set_dither_seed(outfptr, ivalue, status); } else if (!strncmp(card+2, "I2F", 3) ) { /* set whether to convert integers to float then use lossy compression */ if (!strcasecmp(value, "t") ) { fits_set_lossy_int (outfptr, 1, status); } else if (!strcasecmp(value, "f") ) { fits_set_lossy_int (outfptr, 0, status); } else { ffpmsg("Unknown value for FZI2F keyword: (set_compression_pref)"); ffpmsg(value); return(*status = DATA_COMPRESSION_ERR); } } else if (!strncmp(card+2, "HSCALE ", 6) ) { /* set the desired Hcompress scale value */ hscale = (float) atof(value); fits_set_hcomp_scale (outfptr, hscale, status); } } } return(*status); } /*--------------------------------------------------------------------------*/ int fits_get_noise_bits(fitsfile *fptr, /* I - FITS file pointer */ int *noisebits, /* noise_bits parameter value */ /* (default = 4) */ int *status) /* IO - error status */ { /* ******************************************************************** ******************************************************************** THIS ROUTINE IS PROVIDED ONLY FOR BACKWARDS COMPATIBILITY; ALL NEW SOFTWARE SHOULD CALL fits_set_quantize_level INSTEAD ******************************************************************** ******************************************************************** This routine returns the value of the noice_bits parameter that should be used when compressing floating point images. The image is divided into tiles, and each tile is compressed and stored in a row of at variable length binary table column. Feb 2008: code changed to use the more general "quantize level" parameter rather than the "noise bits" parameter. If quantize level is greater than zero, then the previous noisebits parameter is approximately given by noise bits = natural logarithm (quantize level) / natural log (2) This result is rounded to the nearest integer. */ double qlevel; qlevel = (fptr->Fptr)->request_quantize_level; if (qlevel > 0. && qlevel < 65537. ) *noisebits = (int) ((log(qlevel) / log(2.0)) + 0.5); else *noisebits = 0; return(*status); } /*--------------------------------------------------------------------------*/ int fits_get_quantize_level(fitsfile *fptr, /* I - FITS file pointer */ float *qlevel, /* quantize level parameter value */ int *status) /* IO - error status */ { /* This routine returns the value of the noice_bits parameter that should be used when compressing floating point images. The image is divided into tiles, and each tile is compressed and stored in a row of at variable length binary table column. */ if ((fptr->Fptr)->request_quantize_level == NO_QUANTIZE) { *qlevel = 0; } else { *qlevel = (fptr->Fptr)->request_quantize_level; } return(*status); } /*--------------------------------------------------------------------------*/ int fits_get_dither_seed(fitsfile *fptr, /* I - FITS file pointer */ int *offset, /* dithering offset parameter value */ int *status) /* IO - error status */ { /* This routine returns the value of the dithering offset parameter that is used when compressing floating point images. The image is divided into tiles, and each tile is compressed and stored in a row of at variable length binary table column. */ *offset = (fptr->Fptr)->request_dither_seed; return(*status); }/*--------------------------------------------------------------------------*/ int fits_get_hcomp_scale(fitsfile *fptr, /* I - FITS file pointer */ float *scale, /* Hcompress scale parameter value */ int *status) /* IO - error status */ { /* This routine returns the value of the noice_bits parameter that should be used when compressing floating point images. The image is divided into tiles, and each tile is compressed and stored in a row of at variable length binary table column. */ *scale = (fptr->Fptr)->request_hcomp_scale; return(*status); } /*--------------------------------------------------------------------------*/ int fits_get_hcomp_smooth(fitsfile *fptr, /* I - FITS file pointer */ int *smooth, /* Hcompress smooth parameter value */ int *status) /* IO - error status */ { *smooth = (fptr->Fptr)->request_hcomp_smooth; return(*status); } /*--------------------------------------------------------------------------*/ int fits_img_compress(fitsfile *infptr, /* pointer to image to be compressed */ fitsfile *outfptr, /* empty HDU for output compressed image */ int *status) /* IO - error status */ /* This routine initializes the output table, copies all the keywords, and loops through the input image, compressing the data and writing the compressed tiles to the output table. This is a high level routine that is called by the fpack and funpack FITS compression utilities. */ { int bitpix, naxis; long naxes[MAX_COMPRESS_DIM]; /* int c1, c2, c3; */ if (*status > 0) return(*status); /* get datatype and size of input image */ if (fits_get_img_param(infptr, MAX_COMPRESS_DIM, &bitpix, &naxis, naxes, status) > 0) return(*status); if (naxis < 1 || naxis > MAX_COMPRESS_DIM) { ffpmsg("Image cannot be compressed: NAXIS out of range"); return(*status = BAD_NAXIS); } /* create a new empty HDU in the output file now, before setting the */ /* compression preferences. This HDU will become a binary table that */ /* contains the compressed image. If necessary, create a dummy primary */ /* array, which much precede the binary table extension. */ ffcrhd(outfptr, status); /* this does nothing if the output file is empty */ if ((outfptr->Fptr)->curhdu == 0) /* have to create dummy primary array */ { ffcrim(outfptr, 16, 0, NULL, status); ffcrhd(outfptr, status); } else { /* unset any compress parameter preferences that may have been set when closing the previous HDU in the output file */ fits_unset_compression_param(outfptr, status); } /* set any compress parameter preferences as given in the input file */ fits_set_compression_pref(infptr, outfptr, status); /* special case: the quantization level is not given by a keyword in */ /* the HDU header, so we have to explicitly copy the requested value */ /* to the actual value */ /* do this in imcomp_get_compressed_image_par, instead if ( (outfptr->Fptr)->request_quantize_level != 0.) (outfptr->Fptr)->quantize_level = (outfptr->Fptr)->request_quantize_level; */ /* if requested, treat integer images same as a float image. */ /* Then the pixels will be quantized (lossy algorithm) to achieve */ /* higher amounts of compression than with lossless algorithms */ if ( (outfptr->Fptr)->request_lossy_int_compress != 0 && bitpix > 0) bitpix = FLOAT_IMG; /* compress integer images as if float */ /* initialize output table */ if (imcomp_init_table(outfptr, bitpix, naxis, naxes, 0, status) > 0) return (*status); /* Copy the image header keywords to the table header. */ if (imcomp_copy_img2comp(infptr, outfptr, status) > 0) return (*status); /* turn off any intensity scaling (defined by BSCALE and BZERO */ /* keywords) so that unscaled values will be read by CFITSIO */ /* (except if quantizing an int image, same as a float image) */ if ( (outfptr->Fptr)->request_lossy_int_compress == 0 && bitpix > 0) ffpscl(infptr, 1.0, 0.0, status); /* force a rescan of the output file keywords, so that */ /* the compression parameters will be copied to the internal */ /* fitsfile structure used by CFITSIO */ ffrdef(outfptr, status); /* turn off any intensity scaling (defined by BSCALE and BZERO */ /* keywords) so that unscaled values will be written by CFITSIO */ /* (except if quantizing an int image, same as a float image) */ if ( (outfptr->Fptr)->request_lossy_int_compress == 0 && bitpix > 0) ffpscl(outfptr, 1.0, 0.0, status); /* Read each image tile, compress, and write to a table row. */ imcomp_compress_image (infptr, outfptr, status); /* force another rescan of the output file keywords, to */ /* update PCOUNT and TFORMn = '1PB(iii)' keyword values. */ ffrdef(outfptr, status); /* unset any previously set compress parameter preferences */ fits_unset_compression_request(outfptr, status); /* fits_get_case(&c1, &c2, &c3); printf("c1, c2, c3 = %d, %d, %d\n", c1, c2, c3); */ return (*status); } /*--------------------------------------------------------------------------*/ int imcomp_init_table(fitsfile *outfptr, int inbitpix, int naxis, long *naxes, int writebitpix, /* write the ZBITPIX, ZNAXIS, and ZNAXES keyword? */ int *status) /* create a BINTABLE extension for the output compressed image. */ { char keyname[FLEN_KEYWORD], zcmptype[12]; int ii, remain, ncols, bitpix; long nrows; char *ttype[] = {"COMPRESSED_DATA", "ZSCALE", "ZZERO"}; char *tform[3]; char tf0[4], tf1[4], tf2[4]; char *tunit[] = {"\0", "\0", "\0" }; char comm[FLEN_COMMENT]; long actual_tilesize[MAX_COMPRESS_DIM]; /* Actual size to use for tiles */ if (*status > 0) return(*status); /* check for special case of losslessly compressing floating point */ /* images. Only compression algorithm that supports this is GZIP */ if ( (outfptr->Fptr)->request_quantize_level == NO_QUANTIZE) { if (((outfptr->Fptr)->request_compress_type != GZIP_1) && ((outfptr->Fptr)->request_compress_type != GZIP_2)) { ffpmsg("Lossless compression of floating point images must use GZIP (imcomp_init_table)"); return(*status = DATA_COMPRESSION_ERR); } } /* set default compression parameter values, if undefined */ if ( (outfptr->Fptr)->request_compress_type == 0) { /* use RICE_1 by default */ (outfptr->Fptr)->request_compress_type = RICE_1; } if (inbitpix < 0 && (outfptr->Fptr)->request_quantize_level != NO_QUANTIZE) { /* set defaults for quantizing floating point images */ if ( (outfptr->Fptr)->request_quantize_method == 0) { /* set default dithering method */ (outfptr->Fptr)->request_quantize_method = SUBTRACTIVE_DITHER_1; } if ( (outfptr->Fptr)->request_quantize_level == 0) { if ((outfptr->Fptr)->request_quantize_method == NO_DITHER) { /* must use finer quantization if no dithering is done */ (outfptr->Fptr)->request_quantize_level = 16; } else { (outfptr->Fptr)->request_quantize_level = 4; } } } /* special case: the quantization level is not given by a keyword in */ /* the HDU header, so we have to explicitly copy the requested value */ /* to the actual value */ /* do this in imcomp_get_compressed_image_par, instead if ( (outfptr->Fptr)->request_quantize_level != 0.) (outfptr->Fptr)->quantize_level = (outfptr->Fptr)->request_quantize_level; */ /* test for the 2 special cases that represent unsigned integers */ if (inbitpix == USHORT_IMG) bitpix = SHORT_IMG; else if (inbitpix == ULONG_IMG) bitpix = LONG_IMG; else if (inbitpix == SBYTE_IMG) bitpix = BYTE_IMG; else bitpix = inbitpix; /* reset default tile dimensions too if required */ memcpy(actual_tilesize, outfptr->Fptr->request_tilesize, MAX_COMPRESS_DIM * sizeof(long)); if ((outfptr->Fptr)->request_compress_type == HCOMPRESS_1) { if (naxis < 2 ) { ffpmsg("Hcompress cannot be used with 1-dimensional images (imcomp_init_table)"); return(*status = DATA_COMPRESSION_ERR); } else if (naxes[0] < 4 || naxes[1] < 4) { ffpmsg("Hcompress minimum image dimension is 4 pixels (imcomp_init_table)"); return(*status = DATA_COMPRESSION_ERR); } if ((actual_tilesize[0] <= 0) && (actual_tilesize[1] == -1) ){ /* compress the whole image as a single tile */ actual_tilesize[0] = naxes[0]; actual_tilesize[1] = naxes[1]; for (ii = 2; ii < naxis; ii++) { /* set all higher tile dimensions = 1 */ actual_tilesize[ii] = 1; } } else if ((actual_tilesize[0] <= 0) && (actual_tilesize[1] == 0 || actual_tilesize[1] == 1) ){ /* The Hcompress algorithm is inherently 2D in nature, so the row by row tiling that is used for other compression algorithms is not appropriate. If the image has less than 30 rows, then the entire image will be compressed as a single tile. Otherwise the tiles will consist of 16 rows of the image. This keeps the tiles to a reasonable size, and it also includes enough rows to allow good compression efficiency. If the last tile of the image happens to contain less than 4 rows, then find another tile size with between 14 and 30 rows (preferably even), so that the last tile has at least 4 rows */ /* 1st tile dimension is the row length of the image */ actual_tilesize[0] = naxes[0]; if (naxes[1] <= 30) { /* use whole image if it is small */ actual_tilesize[1] = naxes[1]; } else { /* look for another good tile dimension */ if (naxes[1] % 16 == 0 || naxes[1] % 16 > 3) { actual_tilesize[1] = 16; } else if (naxes[1] % 24 == 0 || naxes[1] % 24 > 3) { actual_tilesize[1] = 24; } else if (naxes[1] % 20 == 0 || naxes[1] % 20 > 3) { actual_tilesize[1] = 20; } else if (naxes[1] % 30 == 0 || naxes[1] % 30 > 3) { actual_tilesize[1] = 30; } else if (naxes[1] % 28 == 0 || naxes[1] % 28 > 3) { actual_tilesize[1] = 28; } else if (naxes[1] % 26 == 0 || naxes[1] % 26 > 3) { actual_tilesize[1] = 26; } else if (naxes[1] % 22 == 0 || naxes[1] % 22 > 3) { actual_tilesize[1] = 22; } else if (naxes[1] % 18 == 0 || naxes[1] % 18 > 3) { actual_tilesize[1] = 18; } else if (naxes[1] % 14 == 0 || naxes[1] % 14 > 3) { actual_tilesize[1] = 14; } else { actual_tilesize[1] = 17; } } } else if (actual_tilesize[0] < 4 || actual_tilesize[1] < 4) { /* user-specified tile size is too small */ ffpmsg("Hcompress minimum tile dimension is 4 pixels (imcomp_init_table)"); return(*status = DATA_COMPRESSION_ERR); } /* check if requested tile size causes the last tile to to have less than 4 pixels */ remain = naxes[0] % (actual_tilesize[0]); /* 1st dimension */ if (remain > 0 && remain < 4) { (actual_tilesize[0])++; /* try increasing tile size by 1 */ remain = naxes[0] % (actual_tilesize[0]); if (remain > 0 && remain < 4) { ffpmsg("Last tile along 1st dimension has less than 4 pixels (imcomp_init_table)"); return(*status = DATA_COMPRESSION_ERR); } } remain = naxes[1] % (actual_tilesize[1]); /* 2nd dimension */ if (remain > 0 && remain < 4) { (actual_tilesize[1])++; /* try increasing tile size by 1 */ remain = naxes[1] % (actual_tilesize[1]); if (remain > 0 && remain < 4) { ffpmsg("Last tile along 2nd dimension has less than 4 pixels (imcomp_init_table)"); return(*status = DATA_COMPRESSION_ERR); } } } /* end, if HCOMPRESS_1 */ for (ii = 0; ii < naxis; ii++) { if (ii == 0) { /* first axis is different */ if (actual_tilesize[ii] <= 0) { actual_tilesize[ii] = naxes[ii]; } } else { if (actual_tilesize[ii] < 0) { actual_tilesize[ii] = naxes[ii]; /* negative value maean use whole length */ } else if (actual_tilesize[ii] == 0) { actual_tilesize[ii] = 1; /* zero value means use default value = 1 */ } } } /* ---- set up array of TFORM strings -------------------------------*/ if ( (outfptr->Fptr)->request_huge_hdu != 0) { strcpy(tf0, "1QB"); } else { strcpy(tf0, "1PB"); } strcpy(tf1, "1D"); strcpy(tf2, "1D"); tform[0] = tf0; tform[1] = tf1; tform[2] = tf2; /* calculate number of rows in output table */ nrows = 1; for (ii = 0; ii < naxis; ii++) { nrows = nrows * ((naxes[ii] - 1)/ (actual_tilesize[ii]) + 1); } /* determine the default number of columns in the output table */ if (bitpix < 0 && (outfptr->Fptr)->request_quantize_level != NO_QUANTIZE) ncols = 3; /* quantized and scaled floating point image */ else ncols = 1; /* default table has just one 'COMPRESSED_DATA' column */ if ((outfptr->Fptr)->request_compress_type == RICE_1) { strcpy(zcmptype, "RICE_1"); } else if ((outfptr->Fptr)->request_compress_type == GZIP_1) { strcpy(zcmptype, "GZIP_1"); } else if ((outfptr->Fptr)->request_compress_type == GZIP_2) { strcpy(zcmptype, "GZIP_2"); } else if ((outfptr->Fptr)->request_compress_type == BZIP2_1) { strcpy(zcmptype, "BZIP2_1"); } else if ((outfptr->Fptr)->request_compress_type == PLIO_1) { strcpy(zcmptype, "PLIO_1"); /* the PLIO compression algorithm outputs short integers, not bytes */ if ( (outfptr->Fptr)->request_huge_hdu != 0) { strcpy(tform[0], "1QI"); } else { strcpy(tform[0], "1PI"); } } else if ((outfptr->Fptr)->request_compress_type == HCOMPRESS_1) { strcpy(zcmptype, "HCOMPRESS_1"); } else if ((outfptr->Fptr)->request_compress_type == NOCOMPRESS) { strcpy(zcmptype, "NOCOMPRESS"); } else { ffpmsg("unknown compression type (imcomp_init_table)"); return(*status = DATA_COMPRESSION_ERR); } /* create the bintable extension to contain the compressed image */ ffcrtb(outfptr, BINARY_TBL, nrows, ncols, ttype, tform, tunit, 0, status); /* Add standard header keywords. */ ffpkyl (outfptr, "ZIMAGE", 1, "extension contains compressed image", status); if (writebitpix) { /* write the keywords defining the datatype and dimensions of */ /* the uncompressed image. If not, these keywords will be */ /* copied later from the input uncompressed image */ ffpkyl (outfptr, "ZSIMPLE", 1, "file does conform to FITS standard", status); ffpkyj (outfptr, "ZBITPIX", bitpix, "data type of original image", status); ffpkyj (outfptr, "ZNAXIS", naxis, "dimension of original image", status); for (ii = 0; ii < naxis; ii++) { sprintf (keyname, "ZNAXIS%d", ii+1); ffpkyj (outfptr, keyname, naxes[ii], "length of original image axis", status); } } for (ii = 0; ii < naxis; ii++) { sprintf (keyname, "ZTILE%d", ii+1); ffpkyj (outfptr, keyname, actual_tilesize[ii], "size of tiles to be compressed", status); } if (bitpix < 0) { if ((outfptr->Fptr)->request_quantize_level == NO_QUANTIZE) { ffpkys(outfptr, "ZQUANTIZ", "NONE", "Lossless compression without quantization", status); } else { /* Unless dithering has been specifically turned off by setting */ /* request_quantize_method = -1, use dithering by default */ /* when quantizing floating point images. */ if ( (outfptr->Fptr)->request_quantize_method == 0) (outfptr->Fptr)->request_quantize_method = SUBTRACTIVE_DITHER_1; if ((outfptr->Fptr)->request_quantize_method == SUBTRACTIVE_DITHER_1) { ffpkys(outfptr, "ZQUANTIZ", "SUBTRACTIVE_DITHER_1", "Pixel Quantization Algorithm", status); /* also write the associated ZDITHER0 keyword with a default value */ /* which may get updated later. */ ffpky(outfptr, TINT, "ZDITHER0", &((outfptr->Fptr)->request_dither_seed), "dithering offset when quantizing floats", status); } else if ((outfptr->Fptr)->request_quantize_method == SUBTRACTIVE_DITHER_2) { ffpkys(outfptr, "ZQUANTIZ", "SUBTRACTIVE_DITHER_2", "Pixel Quantization Algorithm", status); /* also write the associated ZDITHER0 keyword with a default value */ /* which may get updated later. */ ffpky(outfptr, TINT, "ZDITHER0", &((outfptr->Fptr)->request_dither_seed), "dithering offset when quantizing floats", status); if (!strcmp(zcmptype, "RICE_1")) { /* when using this new dithering method, change the compression type */ /* to an alias, so that old versions of funpack will not be able to */ /* created a corrupted uncompressed image. */ /* ******* can remove this cludge after about June 2015, after most old versions of fpack are gone */ strcpy(zcmptype, "RICE_ONE"); } } else if ((outfptr->Fptr)->request_quantize_method == NO_DITHER) { ffpkys(outfptr, "ZQUANTIZ", "NO_DITHER", "No dithering during quantization", status); } } } ffpkys (outfptr, "ZCMPTYPE", zcmptype, "compression algorithm", status); /* write any algorithm-specific keywords */ if ((outfptr->Fptr)->request_compress_type == RICE_1) { ffpkys (outfptr, "ZNAME1", "BLOCKSIZE", "compression block size", status); /* for now at least, the block size is always 32 */ ffpkyj (outfptr, "ZVAL1", 32, "pixels per block", status); ffpkys (outfptr, "ZNAME2", "BYTEPIX", "bytes per pixel (1, 2, 4, or 8)", status); if (bitpix == BYTE_IMG) ffpkyj (outfptr, "ZVAL2", 1, "bytes per pixel (1, 2, 4, or 8)", status); else if (bitpix == SHORT_IMG) ffpkyj (outfptr, "ZVAL2", 2, "bytes per pixel (1, 2, 4, or 8)", status); else ffpkyj (outfptr, "ZVAL2", 4, "bytes per pixel (1, 2, 4, or 8)", status); } else if ((outfptr->Fptr)->request_compress_type == HCOMPRESS_1) { ffpkys (outfptr, "ZNAME1", "SCALE", "HCOMPRESS scale factor", status); ffpkye (outfptr, "ZVAL1", (outfptr->Fptr)->request_hcomp_scale, 7, "HCOMPRESS scale factor", status); ffpkys (outfptr, "ZNAME2", "SMOOTH", "HCOMPRESS smooth option", status); ffpkyj (outfptr, "ZVAL2", (long) (outfptr->Fptr)->request_hcomp_smooth, "HCOMPRESS smooth option", status); } /* Write the BSCALE and BZERO keywords, if an unsigned integer image */ if (inbitpix == USHORT_IMG) { strcpy(comm, "offset data range to that of unsigned short"); ffpkyg(outfptr, "BZERO", 32768., 0, comm, status); strcpy(comm, "default scaling factor"); ffpkyg(outfptr, "BSCALE", 1.0, 0, comm, status); } else if (inbitpix == SBYTE_IMG) { strcpy(comm, "offset data range to that of signed byte"); ffpkyg(outfptr, "BZERO", -128., 0, comm, status); strcpy(comm, "default scaling factor"); ffpkyg(outfptr, "BSCALE", 1.0, 0, comm, status); } else if (inbitpix == ULONG_IMG) { strcpy(comm, "offset data range to that of unsigned long"); ffpkyg(outfptr, "BZERO", 2147483648., 0, comm, status); strcpy(comm, "default scaling factor"); ffpkyg(outfptr, "BSCALE", 1.0, 0, comm, status); } return(*status); } /*--------------------------------------------------------------------------*/ int imcomp_calc_max_elem (int comptype, int nx, int zbitpix, int blocksize) /* This function returns the maximum number of bytes in a compressed image line. nx = maximum number of pixels in a tile blocksize is only relevant for RICE compression */ { if (comptype == RICE_1) { if (zbitpix == 16) return (sizeof(short) * nx + nx / blocksize + 2 + 4); else return (sizeof(float) * nx + nx / blocksize + 2 + 4); } else if ((comptype == GZIP_1) || (comptype == GZIP_2)) { /* gzip usually compressed by at least a factor of 2 for I*4 images */ /* and somewhat less for I*2 images */ /* If this size turns out to be too small, then the gzip */ /* compression routine will allocate more space as required */ /* to be on the safe size, allocate buffer same size as input */ if (zbitpix == 16) return(nx * 2); else if (zbitpix == 8) return(nx); else return(nx * 4); } else if (comptype == BZIP2_1) { /* To guarantee that the compressed data will fit, allocate an output buffer of size 1% larger than the uncompressed data, plus 600 bytes */ return((int) (nx * 1.01 * zbitpix / 8. + 601.)); } else if (comptype == HCOMPRESS_1) { /* Imperical evidence suggests in the worst case, the compressed stream could be up to 10% larger than the original image. Add 26 byte overhead, only significant for very small tiles Possible improvement: may need to allow a larger size for 32-bit images */ if (zbitpix == 16 || zbitpix == 8) return( (int) (nx * 2.2 + 26)); /* will be compressing 16-bit int array */ else return( (int) (nx * 4.4 + 26)); /* will be compressing 32-bit int array */ } else return(nx * sizeof(int)); } /*--------------------------------------------------------------------------*/ int imcomp_compress_image (fitsfile *infptr, fitsfile *outfptr, int *status) /* This routine does the following: - reads an image one tile at a time - if it is a float or double image, then it tries to quantize the pixels into scaled integers. - it then compressess the integer pixels, or if the it was not possible to quantize the floating point pixels, then it losslessly compresses them with gzip - writes the compressed byte stream to the output FITS file */ { double *tiledata; int anynul, gotnulls = 0, datatype; long ii, row; int naxis; double dummy = 0., dblnull = DOUBLENULLVALUE; float fltnull = FLOATNULLVALUE; long maxtilelen, tilelen, incre[] = {1, 1, 1, 1, 1, 1}; long naxes[MAX_COMPRESS_DIM], fpixel[MAX_COMPRESS_DIM]; long lpixel[MAX_COMPRESS_DIM], tile[MAX_COMPRESS_DIM]; long tilesize[MAX_COMPRESS_DIM]; long i0, i1, i2, i3, i4, i5; char card[FLEN_CARD]; if (*status > 0) return(*status); maxtilelen = (outfptr->Fptr)->maxtilelen; /* Allocate buffer to hold 1 tile of data; size depends on which compression algorithm is used: Rice and GZIP will compress byte, short, or int arrays without conversion. PLIO requires 4-byte int values, so byte and short arrays must be converted to int. HCompress internally converts byte or short values to ints, and converts int values to 8-byte longlong integers. */ if ((outfptr->Fptr)->zbitpix == FLOAT_IMG) { datatype = TFLOAT; if ( (outfptr->Fptr)->compress_type == HCOMPRESS_1) { /* need twice as much scratch space (8 bytes per pixel) */ tiledata = (double*) malloc (maxtilelen * 2 *sizeof (float)); } else { tiledata = (double*) malloc (maxtilelen * sizeof (float)); } } else if ((outfptr->Fptr)->zbitpix == DOUBLE_IMG) { datatype = TDOUBLE; tiledata = (double*) malloc (maxtilelen * sizeof (double)); } else if ((outfptr->Fptr)->zbitpix == SHORT_IMG) { datatype = TSHORT; if ( (outfptr->Fptr)->compress_type == RICE_1 || (outfptr->Fptr)->compress_type == GZIP_1 || (outfptr->Fptr)->compress_type == GZIP_2 || (outfptr->Fptr)->compress_type == BZIP2_1 || (outfptr->Fptr)->compress_type == NOCOMPRESS) { /* only need buffer of I*2 pixels for gzip, bzip2, and Rice */ tiledata = (double*) malloc (maxtilelen * sizeof (short)); } else { /* need buffer of I*4 pixels for Hcompress and PLIO */ tiledata = (double*) malloc (maxtilelen * sizeof (int)); } } else if ((outfptr->Fptr)->zbitpix == BYTE_IMG) { datatype = TBYTE; if ( (outfptr->Fptr)->compress_type == RICE_1 || (outfptr->Fptr)->compress_type == BZIP2_1 || (outfptr->Fptr)->compress_type == GZIP_1 || (outfptr->Fptr)->compress_type == GZIP_2) { /* only need buffer of I*1 pixels for gzip, bzip2, and Rice */ tiledata = (double*) malloc (maxtilelen); } else { /* need buffer of I*4 pixels for Hcompress and PLIO */ tiledata = (double*) malloc (maxtilelen * sizeof (int)); } } else if ((outfptr->Fptr)->zbitpix == LONG_IMG) { datatype = TINT; if ( (outfptr->Fptr)->compress_type == HCOMPRESS_1) { /* need twice as much scratch space (8 bytes per pixel) */ tiledata = (double*) malloc (maxtilelen * 2 * sizeof (int)); } else { /* only need buffer of I*4 pixels for gzip, bzip2, Rice, and PLIO */ tiledata = (double*) malloc (maxtilelen * sizeof (int)); } } else { ffpmsg("Bad image datatype. (imcomp_compress_image)"); return (*status = MEMORY_ALLOCATION); } if (tiledata == NULL) { ffpmsg("Out of memory. (imcomp_compress_image)"); return (*status = MEMORY_ALLOCATION); } /* calculate size of tile in each dimension */ naxis = (outfptr->Fptr)->zndim; for (ii = 0; ii < MAX_COMPRESS_DIM; ii++) { if (ii < naxis) { naxes[ii] = (outfptr->Fptr)->znaxis[ii]; tilesize[ii] = (outfptr->Fptr)->tilesize[ii]; } else { naxes[ii] = 1; tilesize[ii] = 1; } } row = 1; /* set up big loop over up to 6 dimensions */ for (i5 = 1; i5 <= naxes[5]; i5 += tilesize[5]) { fpixel[5] = i5; lpixel[5] = minvalue(i5 + tilesize[5] - 1, naxes[5]); tile[5] = lpixel[5] - fpixel[5] + 1; for (i4 = 1; i4 <= naxes[4]; i4 += tilesize[4]) { fpixel[4] = i4; lpixel[4] = minvalue(i4 + tilesize[4] - 1, naxes[4]); tile[4] = lpixel[4] - fpixel[4] + 1; for (i3 = 1; i3 <= naxes[3]; i3 += tilesize[3]) { fpixel[3] = i3; lpixel[3] = minvalue(i3 + tilesize[3] - 1, naxes[3]); tile[3] = lpixel[3] - fpixel[3] + 1; for (i2 = 1; i2 <= naxes[2]; i2 += tilesize[2]) { fpixel[2] = i2; lpixel[2] = minvalue(i2 + tilesize[2] - 1, naxes[2]); tile[2] = lpixel[2] - fpixel[2] + 1; for (i1 = 1; i1 <= naxes[1]; i1 += tilesize[1]) { fpixel[1] = i1; lpixel[1] = minvalue(i1 + tilesize[1] - 1, naxes[1]); tile[1] = lpixel[1] - fpixel[1] + 1; for (i0 = 1; i0 <= naxes[0]; i0 += tilesize[0]) { fpixel[0] = i0; lpixel[0] = minvalue(i0 + tilesize[0] - 1, naxes[0]); tile[0] = lpixel[0] - fpixel[0] + 1; /* number of pixels in this tile */ tilelen = tile[0]; for (ii = 1; ii < naxis; ii++) { tilelen *= tile[ii]; } /* read next tile of data from image */ anynul = 0; if (datatype == TFLOAT) { ffgsve(infptr, 1, naxis, naxes, fpixel, lpixel, incre, FLOATNULLVALUE, (float *) tiledata, &anynul, status); } else if (datatype == TDOUBLE) { ffgsvd(infptr, 1, naxis, naxes, fpixel, lpixel, incre, DOUBLENULLVALUE, tiledata, &anynul, status); } else if (datatype == TINT) { ffgsvk(infptr, 1, naxis, naxes, fpixel, lpixel, incre, 0, (int *) tiledata, &anynul, status); } else if (datatype == TSHORT) { ffgsvi(infptr, 1, naxis, naxes, fpixel, lpixel, incre, 0, (short *) tiledata, &anynul, status); } else if (datatype == TBYTE) { ffgsvb(infptr, 1, naxis, naxes, fpixel, lpixel, incre, 0, (unsigned char *) tiledata, &anynul, status); } else { ffpmsg("Error bad datatype of image tile to compress"); free(tiledata); return (*status); } /* now compress the tile, and write to row of binary table */ /* NOTE: we don't have to worry about the presence of null values in the array if it is an integer array: the null value is simply encoded in the compressed array just like any other pixel value. If it is a floating point array, then we need to check for null only if the anynul parameter returned a true value when reading the tile */ if (anynul && datatype == TFLOAT) { imcomp_compress_tile(outfptr, row, datatype, tiledata, tilelen, tile[0], tile[1], 1, &fltnull, status); } else if (anynul && datatype == TDOUBLE) { imcomp_compress_tile(outfptr, row, datatype, tiledata, tilelen, tile[0], tile[1], 1, &dblnull, status); } else { imcomp_compress_tile(outfptr, row, datatype, tiledata, tilelen, tile[0], tile[1], 0, &dummy, status); } /* set flag if we found any null values */ if (anynul) gotnulls = 1; /* check for any error in the previous operations */ if (*status > 0) { ffpmsg("Error writing compressed image to table"); free(tiledata); return (*status); } row++; } } } } } } free (tiledata); /* finished with this buffer */ /* insert ZBLANK keyword if necessary; only for TFLOAT or TDOUBLE images */ if (gotnulls) { ffgcrd(outfptr, "ZCMPTYPE", card, status); ffikyj(outfptr, "ZBLANK", COMPRESS_NULL_VALUE, "null value in the compressed integer array", status); } return (*status); } /*--------------------------------------------------------------------------*/ int imcomp_compress_tile (fitsfile *outfptr, long row, /* tile number = row in the binary table that holds the compressed data */ int datatype, void *tiledata, long tilelen, long tilenx, long tileny, int nullcheck, void *nullflagval, int *status) /* This is the main compression routine. This routine does the following to the input tile of pixels: - if it is a float or double image, then it quantizes the pixels - compresses the integer pixel values - writes the compressed byte stream to the FITS file. If the tile cannot be quantized than the raw float or double values are losslessly compressed with gzip and then written to the output table. This input array may be modified by this routine. If the array is of type TINT or TFLOAT, and the compression type is HCOMPRESS, then it must have been allocated to be twice as large (8 bytes per pixel) to provide scratch space. Note that this routine does not fully support the implicit datatype conversion that is supported when writing to normal FITS images. The datatype of the input array must have the same datatype (either signed or unsigned) as the output (compressed) FITS image in some cases. */ { int *idata; /* quantized integer data */ int cn_zblank, zbitpix, nullval; int flag = 1; /* true by default; only = 0 if float data couldn't be quantized */ int intlength; /* size of integers to be compressed */ double scale, zero, actual_bzero; long ii; size_t clen; /* size of cbuf */ short *cbuf; /* compressed data */ int nelem = 0; /* number of bytes */ int tilecol; size_t gzip_nelem = 0; unsigned int bzlen; int ihcompscale; float hcompscale; double noise2, noise3, noise5; double bscale[1] = {1.}, bzero[1] = {0.}; /* scaling parameters */ long hcomp_len; LONGLONG *lldata; if (*status > 0) return(*status); /* check for special case of losslessly compressing floating point */ /* images. Only compression algorithm that supports this is GZIP */ if ( (outfptr->Fptr)->quantize_level == NO_QUANTIZE) { if (((outfptr->Fptr)->compress_type != GZIP_1) && ((outfptr->Fptr)->compress_type != GZIP_2)) { ffpmsg("Lossless compression of floating point images must use GZIP (imcomp_compress_tile)"); return(*status = DATA_COMPRESSION_ERR); } } /* free the previously saved tile if the input tile is for the same row */ if ((outfptr->Fptr)->tilerow) { /* has the tile cache been allocated? */ /* calculate the column bin of the compressed tile */ tilecol = (row - 1) % ((long)(((outfptr->Fptr)->znaxis[0] - 1) / ((outfptr->Fptr)->tilesize[0])) + 1); if ((outfptr->Fptr)->tilerow[tilecol] == row) { if (((outfptr->Fptr)->tiledata)[tilecol]) { free(((outfptr->Fptr)->tiledata)[tilecol]); } if (((outfptr->Fptr)->tilenullarray)[tilecol]) { free(((outfptr->Fptr)->tilenullarray)[tilecol]); } ((outfptr->Fptr)->tiledata)[tilecol] = 0; ((outfptr->Fptr)->tilenullarray)[tilecol] = 0; (outfptr->Fptr)->tilerow[tilecol] = 0; (outfptr->Fptr)->tiledatasize[tilecol] = 0; (outfptr->Fptr)->tiletype[tilecol] = 0; (outfptr->Fptr)->tileanynull[tilecol] = 0; } } if ( (outfptr->Fptr)->compress_type == NOCOMPRESS) { /* Special case when using NOCOMPRESS for diagnostic purposes in fpack */ if (imcomp_write_nocompress_tile(outfptr, row, datatype, tiledata, tilelen, nullcheck, nullflagval, status) > 0) { return(*status); } return(*status); } /* =========================================================================== */ /* initialize various parameters */ idata = (int *) tiledata; /* may overwrite the input tiledata in place */ /* zbitpix is the BITPIX keyword value in the uncompressed FITS image */ zbitpix = (outfptr->Fptr)->zbitpix; /* if the tile/image has an integer datatype, see if a null value has */ /* been defined (with the BLANK keyword in a normal FITS image). */ /* If so, and if the input tile array also contains null pixels, */ /* (represented by pixels that have a value = nullflagval) then */ /* any pixels whose value = nullflagval, must be set to the value = nullval */ /* before the pixel array is compressed. These null pixel values must */ /* not be inverse scaled by the BSCALE/BZERO values, if present. */ cn_zblank = (outfptr->Fptr)->cn_zblank; nullval = (outfptr->Fptr)->zblank; if (zbitpix > 0 && cn_zblank != -1) /* If the integer image has no defined null */ nullcheck = 0; /* value, then don't bother checking input array for nulls. */ /* if the BSCALE and BZERO keywords exist, then the input values must */ /* be inverse scaled by this factor, before the values are compressed. */ /* (The program may have turned off scaling, which over rides the keywords) */ scale = (outfptr->Fptr)->cn_bscale; zero = (outfptr->Fptr)->cn_bzero; actual_bzero = (outfptr->Fptr)->cn_actual_bzero; /* =========================================================================== */ /* prepare the tile of pixel values for compression */ if (datatype == TSHORT) { imcomp_convert_tile_tshort(outfptr, tiledata, tilelen, nullcheck, nullflagval, nullval, zbitpix, scale, zero, actual_bzero, &intlength, status); } else if (datatype == TUSHORT) { imcomp_convert_tile_tushort(outfptr, tiledata, tilelen, nullcheck, nullflagval, nullval, zbitpix, scale, zero, &intlength, status); } else if (datatype == TBYTE) { imcomp_convert_tile_tbyte(outfptr, tiledata, tilelen, nullcheck, nullflagval, nullval, zbitpix, scale, zero, &intlength, status); } else if (datatype == TSBYTE) { imcomp_convert_tile_tsbyte(outfptr, tiledata, tilelen, nullcheck, nullflagval, nullval, zbitpix, scale, zero, &intlength, status); } else if (datatype == TINT) { imcomp_convert_tile_tint(outfptr, tiledata, tilelen, nullcheck, nullflagval, nullval, zbitpix, scale, zero, &intlength, status); } else if (datatype == TUINT) { imcomp_convert_tile_tuint(outfptr, tiledata, tilelen, nullcheck, nullflagval, nullval, zbitpix, scale, zero, &intlength, status); } else if (datatype == TLONG && sizeof(long) == 8) { ffpmsg("Integer*8 Long datatype is not supported when writing to compressed images"); return(*status = BAD_DATATYPE); } else if (datatype == TULONG && sizeof(long) == 8) { ffpmsg("Unsigned integer*8 datatype is not supported when writing to compressed images"); return(*status = BAD_DATATYPE); } else if (datatype == TFLOAT) { imcomp_convert_tile_tfloat(outfptr, row, tiledata, tilelen, tilenx, tileny, nullcheck, nullflagval, nullval, zbitpix, scale, zero, &intlength, &flag, bscale, bzero, status); } else if (datatype == TDOUBLE) { imcomp_convert_tile_tdouble(outfptr, row, tiledata, tilelen, tilenx, tileny, nullcheck, nullflagval, nullval, zbitpix, scale, zero, &intlength, &flag, bscale, bzero, status); } else { ffpmsg("unsupported image datatype (imcomp_compress_tile)"); return(*status = BAD_DATATYPE); } if (*status > 0) return(*status); /* return if error occurs */ /* =========================================================================== */ if (flag) /* now compress the integer data array */ { /* allocate buffer for the compressed tile bytes */ clen = (outfptr->Fptr)->maxelem; cbuf = (short *) calloc (clen, sizeof (unsigned char)); if (cbuf == NULL) { ffpmsg("Memory allocation failure. (imcomp_compress_tile)"); return (*status = MEMORY_ALLOCATION); } /* =========================================================================== */ if ( (outfptr->Fptr)->compress_type == RICE_1) { if (intlength == 2) { nelem = fits_rcomp_short ((short *)idata, tilelen, (unsigned char *) cbuf, clen, (outfptr->Fptr)->rice_blocksize); } else if (intlength == 1) { nelem = fits_rcomp_byte ((signed char *)idata, tilelen, (unsigned char *) cbuf, clen, (outfptr->Fptr)->rice_blocksize); } else { nelem = fits_rcomp (idata, tilelen, (unsigned char *) cbuf, clen, (outfptr->Fptr)->rice_blocksize); } if (nelem < 0) /* data compression error condition */ { free (cbuf); ffpmsg("error Rice compressing image tile (imcomp_compress_tile)"); return (*status = DATA_COMPRESSION_ERR); } /* Write the compressed byte stream. */ ffpclb(outfptr, (outfptr->Fptr)->cn_compressed, row, 1, nelem, (unsigned char *) cbuf, status); } /* =========================================================================== */ else if ( (outfptr->Fptr)->compress_type == PLIO_1) { for (ii = 0; ii < tilelen; ii++) { if (idata[ii] < 0 || idata[ii] > 16777215) { /* plio algorithn only supports positive 24 bit ints */ ffpmsg("data out of range for PLIO compression (0 - 2**24)"); return(*status = DATA_COMPRESSION_ERR); } } nelem = pl_p2li (idata, 1, cbuf, tilelen); if (nelem < 0) /* data compression error condition */ { free (cbuf); ffpmsg("error PLIO compressing image tile (imcomp_compress_tile)"); return (*status = DATA_COMPRESSION_ERR); } /* Write the compressed byte stream. */ ffpcli(outfptr, (outfptr->Fptr)->cn_compressed, row, 1, nelem, cbuf, status); } /* =========================================================================== */ else if ( ((outfptr->Fptr)->compress_type == GZIP_1) || ((outfptr->Fptr)->compress_type == GZIP_2) ) { if ((outfptr->Fptr)->quantize_level == NO_QUANTIZE && datatype == TFLOAT) { /* Special case of losslessly compressing floating point pixels with GZIP */ /* In this case we compress the input tile array directly */ #if BYTESWAPPED ffswap4((int*) tiledata, tilelen); #endif if ( (outfptr->Fptr)->compress_type == GZIP_2 ) fits_shuffle_4bytes((char *) tiledata, tilelen, status); compress2mem_from_mem((char *) tiledata, tilelen * sizeof(float), (char **) &cbuf, &clen, realloc, &gzip_nelem, status); } else if ((outfptr->Fptr)->quantize_level == NO_QUANTIZE && datatype == TDOUBLE) { /* Special case of losslessly compressing double pixels with GZIP */ /* In this case we compress the input tile array directly */ #if BYTESWAPPED ffswap8((double *) tiledata, tilelen); #endif if ( (outfptr->Fptr)->compress_type == GZIP_2 ) fits_shuffle_8bytes((char *) tiledata, tilelen, status); compress2mem_from_mem((char *) tiledata, tilelen * sizeof(double), (char **) &cbuf, &clen, realloc, &gzip_nelem, status); } else { /* compress the integer idata array */ #if BYTESWAPPED if (intlength == 2) ffswap2((short *) idata, tilelen); else if (intlength == 4) ffswap4(idata, tilelen); #endif if (intlength == 2) { if ( (outfptr->Fptr)->compress_type == GZIP_2 ) fits_shuffle_2bytes((char *) tiledata, tilelen, status); compress2mem_from_mem((char *) idata, tilelen * sizeof(short), (char **) &cbuf, &clen, realloc, &gzip_nelem, status); } else if (intlength == 1) { compress2mem_from_mem((char *) idata, tilelen * sizeof(unsigned char), (char **) &cbuf, &clen, realloc, &gzip_nelem, status); } else { if ( (outfptr->Fptr)->compress_type == GZIP_2 ) fits_shuffle_4bytes((char *) tiledata, tilelen, status); compress2mem_from_mem((char *) idata, tilelen * sizeof(int), (char **) &cbuf, &clen, realloc, &gzip_nelem, status); } } /* Write the compressed byte stream. */ ffpclb(outfptr, (outfptr->Fptr)->cn_compressed, row, 1, gzip_nelem, (unsigned char *) cbuf, status); /* =========================================================================== */ } else if ( (outfptr->Fptr)->compress_type == BZIP2_1) { #if BYTESWAPPED if (intlength == 2) ffswap2((short *) idata, tilelen); else if (intlength == 4) ffswap4(idata, tilelen); #endif bzlen = (unsigned int) clen; /* call bzip2 with blocksize = 900K, verbosity = 0, and default workfactor */ /* bzip2 is not supported in the public release. This is only for test purposes. if (BZ2_bzBuffToBuffCompress( (char *) cbuf, &bzlen, (char *) idata, (unsigned int) (tilelen * intlength), 9, 0, 0) ) */ { ffpmsg("bzip2 compression error"); return(*status = DATA_COMPRESSION_ERR); } /* Write the compressed byte stream. */ ffpclb(outfptr, (outfptr->Fptr)->cn_compressed, row, 1, bzlen, (unsigned char *) cbuf, status); /* =========================================================================== */ } else if ( (outfptr->Fptr)->compress_type == HCOMPRESS_1) { /* if hcompscale is positive, then we have to multiply the value by the RMS background noise to get the absolute scale value. If negative, then it gives the absolute scale value directly. */ hcompscale = (outfptr->Fptr)->hcomp_scale; if (hcompscale > 0.) { fits_img_stats_int(idata, tilenx, tileny, nullcheck, nullval, 0,0,0,0,0,0,&noise2,&noise3,&noise5,status); /* use the minimum of the 3 noise estimates */ if (noise2 != 0. && noise2 < noise3) noise3 = noise2; if (noise5 != 0. && noise5 < noise3) noise3 = noise5; hcompscale = (float) (hcompscale * noise3); } else if (hcompscale < 0.) { hcompscale = hcompscale * -1.0F; } ihcompscale = (int) (hcompscale + 0.5); hcomp_len = clen; /* allocated size of the buffer */ if (zbitpix == BYTE_IMG || zbitpix == SHORT_IMG) { fits_hcompress(idata, tilenx, tileny, ihcompscale, (char *) cbuf, &hcomp_len, status); } else { /* have to convert idata to an I*8 array, in place */ /* idata must have been allocated large enough to do this */ lldata = (LONGLONG *) idata; for (ii = tilelen - 1; ii >= 0; ii--) { lldata[ii] = idata[ii]; } fits_hcompress64(lldata, tilenx, tileny, ihcompscale, (char *) cbuf, &hcomp_len, status); } /* Write the compressed byte stream. */ ffpclb(outfptr, (outfptr->Fptr)->cn_compressed, row, 1, hcomp_len, (unsigned char *) cbuf, status); } /* =========================================================================== */ if ((outfptr->Fptr)->cn_zscale > 0) { /* write the linear scaling parameters for this tile */ ffpcld (outfptr, (outfptr->Fptr)->cn_zscale, row, 1, 1, bscale, status); ffpcld (outfptr, (outfptr->Fptr)->cn_zzero, row, 1, 1, bzero, status); } free(cbuf); /* finished with this buffer */ /* =========================================================================== */ } else { /* if flag == 0., floating point data couldn't be quantized */ /* losslessly compress the data with gzip. */ /* if gzip2 compressed data column doesn't exist, create it */ if ((outfptr->Fptr)->cn_gzip_data < 1) { if ( (outfptr->Fptr)->request_huge_hdu != 0) { fits_insert_col(outfptr, 999, "GZIP_COMPRESSED_DATA", "1QB", status); } else { fits_insert_col(outfptr, 999, "GZIP_COMPRESSED_DATA", "1PB", status); } if (*status <= 0) /* save the number of this column */ ffgcno(outfptr, CASEINSEN, "GZIP_COMPRESSED_DATA", &(outfptr->Fptr)->cn_gzip_data, status); } if (datatype == TFLOAT) { /* allocate buffer for the compressed tile bytes */ /* make it 10% larger than the original uncompressed data */ clen = (size_t) (tilelen * sizeof(float) * 1.1); cbuf = (short *) calloc (clen, sizeof (unsigned char)); if (cbuf == NULL) { ffpmsg("Memory allocation error. (imcomp_compress_tile)"); return (*status = MEMORY_ALLOCATION); } /* convert null values to NaNs in place, if necessary */ if (nullcheck == 1) { imcomp_float2nan((float *) tiledata, tilelen, (int *) tiledata, *(float *) (nullflagval), status); } #if BYTESWAPPED ffswap4((int*) tiledata, tilelen); #endif compress2mem_from_mem((char *) tiledata, tilelen * sizeof(float), (char **) &cbuf, &clen, realloc, &gzip_nelem, status); } else if (datatype == TDOUBLE) { /* allocate buffer for the compressed tile bytes */ /* make it 10% larger than the original uncompressed data */ clen = (size_t) (tilelen * sizeof(double) * 1.1); cbuf = (short *) calloc (clen, sizeof (unsigned char)); if (cbuf == NULL) { ffpmsg("Memory allocation error. (imcomp_compress_tile)"); return (*status = MEMORY_ALLOCATION); } /* convert null values to NaNs in place, if necessary */ if (nullcheck == 1) { imcomp_double2nan((double *) tiledata, tilelen, (LONGLONG *) tiledata, *(double *) (nullflagval), status); } #if BYTESWAPPED ffswap8((double*) tiledata, tilelen); #endif compress2mem_from_mem((char *) tiledata, tilelen * sizeof(double), (char **) &cbuf, &clen, realloc, &gzip_nelem, status); } /* Write the compressed byte stream. */ ffpclb(outfptr, (outfptr->Fptr)->cn_gzip_data, row, 1, gzip_nelem, (unsigned char *) cbuf, status); free(cbuf); /* finished with this buffer */ } return(*status); } /*--------------------------------------------------------------------------*/ int imcomp_write_nocompress_tile(fitsfile *outfptr, long row, int datatype, void *tiledata, long tilelen, int nullcheck, void *nullflagval, int *status) { char coltype[4]; /* Write the uncompressed image tile pixels to the tile-compressed image file. */ /* This is a special case when using NOCOMPRESS for diagnostic purposes in fpack. */ /* Currently, this only supports a limited number of data types and */ /* does not fully support null-valued pixels in the image. */ if ((outfptr->Fptr)->cn_uncompressed < 1) { /* uncompressed data column doesn't exist, so append new column to table */ if (datatype == TSHORT) { strcpy(coltype, "1PI"); } else if (datatype == TINT) { strcpy(coltype, "1PJ"); } else if (datatype == TFLOAT) { strcpy(coltype, "1QE"); } else { ffpmsg("NOCOMPRESSION option only supported for int*2, int*4, and float*4 images"); return(*status = DATA_COMPRESSION_ERR); } fits_insert_col(outfptr, 999, "UNCOMPRESSED_DATA", coltype, status); /* create column */ } fits_get_colnum(outfptr, CASEINSEN, "UNCOMPRESSED_DATA", &(outfptr->Fptr)->cn_uncompressed, status); /* save col. num. */ fits_write_col(outfptr, datatype, (outfptr->Fptr)->cn_uncompressed, row, 1, tilelen, tiledata, status); /* write the tile data */ return (*status); } /*--------------------------------------------------------------------------*/ int imcomp_convert_tile_tshort( fitsfile *outfptr, void *tiledata, long tilelen, int nullcheck, void *nullflagval, int nullval, int zbitpix, double scale, double zero, double actual_bzero, int *intlength, int *status) { /* Prepare the input tile array of pixels for compression. */ /* Convert input integer*2 tile array in place to 4 or 8-byte ints for compression, */ /* If needed, convert 4 or 8-byte ints and do null value substitution. */ /* Note that the calling routine must have allocated the input array big enough */ /* to be able to do this. */ short *sbuff; int flagval, *idata; long ii; /* We only support writing this integer*2 tile data to a FITS image with BITPIX = 16 and with BZERO = 0 and BSCALE = 1. */ if (zbitpix != SHORT_IMG || scale != 1.0 || zero != 0.0) { ffpmsg("Datatype conversion/scaling is not supported when writing to compressed images"); return(*status = DATA_COMPRESSION_ERR); } sbuff = (short *) tiledata; idata = (int *) tiledata; if ( (outfptr->Fptr)->compress_type == RICE_1 || (outfptr->Fptr)->compress_type == GZIP_1 || (outfptr->Fptr)->compress_type == GZIP_2 || (outfptr->Fptr)->compress_type == BZIP2_1 ) { /* don't have to convert to int if using gzip, bzip2 or Rice compression */ *intlength = 2; if (nullcheck == 1) { /* reset pixels equal to flagval to the FITS null value, prior to compression */ flagval = *(short *) (nullflagval); if (flagval != nullval) { for (ii = tilelen - 1; ii >= 0; ii--) { if (sbuff[ii] == (short) flagval) sbuff[ii] = (short) nullval; } } } } else if ((outfptr->Fptr)->compress_type == HCOMPRESS_1) { /* have to convert to int if using HCOMPRESS */ *intlength = 4; if (nullcheck == 1) { /* reset pixels equal to flagval to the FITS null value, prior to compression */ flagval = *(short *) (nullflagval); for (ii = tilelen - 1; ii >= 0; ii--) { if (sbuff[ii] == (short) flagval) idata[ii] = nullval; else idata[ii] = (int) sbuff[ii]; } } else { /* just do the data type conversion to int */ for (ii = tilelen - 1; ii >= 0; ii--) idata[ii] = (int) sbuff[ii]; } } else { /* have to convert to int if using PLIO */ *intlength = 4; if (zero == 0. && actual_bzero == 32768.) { /* Here we are compressing unsigned 16-bit integers that have */ /* been offset by -32768 using the standard FITS convention. */ /* Since PLIO cannot deal with negative values, we must apply */ /* the shift of 32786 to the values to make them all positive. */ /* The inverse negative shift will be applied in */ /* imcomp_decompress_tile when reading the compressed tile. */ if (nullcheck == 1) { /* reset pixels equal to flagval to the FITS null value, prior to compression */ flagval = *(short *) (nullflagval); for (ii = tilelen - 1; ii >= 0; ii--) { if (sbuff[ii] == (short) flagval) idata[ii] = nullval; else idata[ii] = (int) sbuff[ii] + 32768; } } else { /* just do the data type conversion to int */ for (ii = tilelen - 1; ii >= 0; ii--) idata[ii] = (int) sbuff[ii] + 32768; } } else { /* This is not an unsigned 16-bit integer array, so process normally */ if (nullcheck == 1) { /* reset pixels equal to flagval to the FITS null value, prior to compression */ flagval = *(short *) (nullflagval); for (ii = tilelen - 1; ii >= 0; ii--) { if (sbuff[ii] == (short) flagval) idata[ii] = nullval; else idata[ii] = (int) sbuff[ii]; } } else { /* just do the data type conversion to int */ for (ii = tilelen - 1; ii >= 0; ii--) idata[ii] = (int) sbuff[ii]; } } } return(*status); } /*--------------------------------------------------------------------------*/ int imcomp_convert_tile_tushort( fitsfile *outfptr, void *tiledata, long tilelen, int nullcheck, void *nullflagval, int nullval, int zbitpix, double scale, double zero, int *intlength, int *status) { /* Prepare the input tile array of pixels for compression. */ /* Convert input unsigned integer*2 tile array in place to 4 or 8-byte ints for compression, */ /* If needed, convert 4 or 8-byte ints and do null value substitution. */ /* Note that the calling routine must have allocated the input array big enough */ /* to be able to do this. */ unsigned short *usbuff; short *sbuff; int flagval, *idata; long ii; /* datatype of input array is unsigned short. We only support writing this datatype to a FITS image with BITPIX = 16 and with BZERO = 0 and BSCALE = 32768. */ if (zbitpix != SHORT_IMG || scale != 1.0 || zero != 32768.) { ffpmsg("Implicit datatype conversion is not supported when writing to compressed images"); return(*status = DATA_COMPRESSION_ERR); } usbuff = (unsigned short *) tiledata; sbuff = (short *) tiledata; idata = (int *) tiledata; if ((outfptr->Fptr)->compress_type == RICE_1 || (outfptr->Fptr)->compress_type == GZIP_1 || (outfptr->Fptr)->compress_type == GZIP_2 || (outfptr->Fptr)->compress_type == BZIP2_1) { /* don't have to convert to int if using gzip, bzip2, or Rice compression */ *intlength = 2; /* offset the unsigned value by -32768 to a signed short value. */ /* It is more efficient to do this by just flipping the most significant of the 16 bits */ if (nullcheck == 1) { /* reset pixels equal to flagval to the FITS null value, prior to compression */ flagval = *(unsigned short *) (nullflagval); for (ii = tilelen - 1; ii >= 0; ii--) { if (usbuff[ii] == (unsigned short) flagval) sbuff[ii] = (short) nullval; else usbuff[ii] = (usbuff[ii]) ^ 0x8000; } } else { /* just offset the pixel values by 32768 (by flipping the MSB */ for (ii = tilelen - 1; ii >= 0; ii--) usbuff[ii] = (usbuff[ii]) ^ 0x8000; } } else { /* have to convert to int if using HCOMPRESS or PLIO */ *intlength = 4; if (nullcheck == 1) { /* offset the pixel values by 32768, and */ /* reset pixels equal to flagval to nullval */ flagval = *(unsigned short *) (nullflagval); for (ii = tilelen - 1; ii >= 0; ii--) { if (usbuff[ii] == (unsigned short) flagval) idata[ii] = nullval; else idata[ii] = ((int) usbuff[ii]) - 32768; } } else { /* just do the data type conversion to int */ for (ii = tilelen - 1; ii >= 0; ii--) idata[ii] = ((int) usbuff[ii]) - 32768; } } return(*status); } /*--------------------------------------------------------------------------*/ int imcomp_convert_tile_tint( fitsfile *outfptr, void *tiledata, long tilelen, int nullcheck, void *nullflagval, int nullval, int zbitpix, double scale, double zero, int *intlength, int *status) { /* Prepare the input tile array of pixels for compression. */ /* Convert input integer tile array in place to 4 or 8-byte ints for compression, */ /* If needed, do null value substitution. */ int flagval, *idata; long ii; /* datatype of input array is int. We only support writing this datatype to a FITS image with BITPIX = 32 and with BZERO = 0 and BSCALE = 1. */ if (zbitpix != LONG_IMG || scale != 1.0 || zero != 0.) { ffpmsg("Implicit datatype conversion is not supported when writing to compressed images"); return(*status = DATA_COMPRESSION_ERR); } idata = (int *) tiledata; *intlength = 4; if (nullcheck == 1) { /* no datatype conversion is required for any of the compression algorithms, except possibly for HCOMPRESS (to I*8), which is handled later. Just reset pixels equal to flagval to the FITS null value */ flagval = *(int *) (nullflagval); if (flagval != nullval) { for (ii = tilelen - 1; ii >= 0; ii--) { if (idata[ii] == flagval) idata[ii] = nullval; } } } return(*status); } /*--------------------------------------------------------------------------*/ int imcomp_convert_tile_tuint( fitsfile *outfptr, void *tiledata, long tilelen, int nullcheck, void *nullflagval, int nullval, int zbitpix, double scale, double zero, int *intlength, int *status) { /* Prepare the input tile array of pixels for compression. */ /* Convert input unsigned integer tile array in place to 4 or 8-byte ints for compression, */ /* If needed, do null value substitution. */ int *idata; unsigned int *uintbuff, uintflagval; long ii; /* datatype of input array is unsigned int. We only support writing this datatype to a FITS image with BITPIX = 32 and with BZERO = 0 and BSCALE = 2147483648. */ if (zbitpix != LONG_IMG || scale != 1.0 || zero != 2147483648.) { ffpmsg("Implicit datatype conversion is not supported when writing to compressed images"); return(*status = DATA_COMPRESSION_ERR); } *intlength = 4; idata = (int *) tiledata; uintbuff = (unsigned int *) tiledata; /* offset the unsigned value by -2147483648 to a signed int value. */ /* It is more efficient to do this by just flipping the most significant of the 32 bits */ if (nullcheck == 1) { /* reset pixels equal to flagval to nullval and */ /* offset the other pixel values (by flipping the MSB) */ uintflagval = *(unsigned int *) (nullflagval); for (ii = tilelen - 1; ii >= 0; ii--) { if (uintbuff[ii] == uintflagval) idata[ii] = nullval; else uintbuff[ii] = (uintbuff[ii]) ^ 0x80000000; } } else { /* just offset the pixel values (by flipping the MSB) */ for (ii = tilelen - 1; ii >= 0; ii--) uintbuff[ii] = (uintbuff[ii]) ^ 0x80000000; } return(*status); } /*--------------------------------------------------------------------------*/ int imcomp_convert_tile_tbyte( fitsfile *outfptr, void *tiledata, long tilelen, int nullcheck, void *nullflagval, int nullval, int zbitpix, double scale, double zero, int *intlength, int *status) { /* Prepare the input tile array of pixels for compression. */ /* Convert input unsigned integer*1 tile array in place to 4 or 8-byte ints for compression, */ /* If needed, convert 4 or 8-byte ints and do null value substitution. */ /* Note that the calling routine must have allocated the input array big enough */ /* to be able to do this. */ int flagval, *idata; long ii; unsigned char *usbbuff; /* datatype of input array is unsigned byte. We only support writing this datatype to a FITS image with BITPIX = 8 and with BZERO = 0 and BSCALE = 1. */ if (zbitpix != BYTE_IMG || scale != 1.0 || zero != 0.) { ffpmsg("Implicit datatype conversion is not supported when writing to compressed images"); return(*status = DATA_COMPRESSION_ERR); } idata = (int *) tiledata; usbbuff = (unsigned char *) tiledata; if ( (outfptr->Fptr)->compress_type == RICE_1 || (outfptr->Fptr)->compress_type == GZIP_1 || (outfptr->Fptr)->compress_type == GZIP_2 || (outfptr->Fptr)->compress_type == BZIP2_1 ) { /* don't have to convert to int if using gzip, bzip2, or Rice compression */ *intlength = 1; if (nullcheck == 1) { /* reset pixels equal to flagval to the FITS null value, prior to compression */ flagval = *(unsigned char *) (nullflagval); if (flagval != nullval) { for (ii = tilelen - 1; ii >= 0; ii--) { if (usbbuff[ii] == (unsigned char) flagval) usbbuff[ii] = (unsigned char) nullval; } } } } else { /* have to convert to int if using HCOMPRESS or PLIO */ *intlength = 4; if (nullcheck == 1) { /* reset pixels equal to flagval to the FITS null value, prior to compression */ flagval = *(unsigned char *) (nullflagval); for (ii = tilelen - 1; ii >= 0; ii--) { if (usbbuff[ii] == (unsigned char) flagval) idata[ii] = nullval; else idata[ii] = (int) usbbuff[ii]; } } else { /* just do the data type conversion to int */ for (ii = tilelen - 1; ii >= 0; ii--) idata[ii] = (int) usbbuff[ii]; } } return(*status); } /*--------------------------------------------------------------------------*/ int imcomp_convert_tile_tsbyte( fitsfile *outfptr, void *tiledata, long tilelen, int nullcheck, void *nullflagval, int nullval, int zbitpix, double scale, double zero, int *intlength, int *status) { /* Prepare the input tile array of pixels for compression. */ /* Convert input integer*1 tile array in place to 4 or 8-byte ints for compression, */ /* If needed, convert 4 or 8-byte ints and do null value substitution. */ /* Note that the calling routine must have allocated the input array big enough */ /* to be able to do this. */ int flagval, *idata; long ii; signed char *sbbuff; /* datatype of input array is signed byte. We only support writing this datatype to a FITS image with BITPIX = 8 and with BZERO = 0 and BSCALE = -128. */ if (zbitpix != BYTE_IMG|| scale != 1.0 || zero != -128.) { ffpmsg("Implicit datatype conversion is not supported when writing to compressed images"); return(*status = DATA_COMPRESSION_ERR); } idata = (int *) tiledata; sbbuff = (signed char *) tiledata; if ( (outfptr->Fptr)->compress_type == RICE_1 || (outfptr->Fptr)->compress_type == GZIP_1 || (outfptr->Fptr)->compress_type == GZIP_2 || (outfptr->Fptr)->compress_type == BZIP2_1 ) { /* don't have to convert to int if using gzip, bzip2 or Rice compression */ *intlength = 1; if (nullcheck == 1) { /* reset pixels equal to flagval to the FITS null value, prior to compression */ /* offset the other pixel values (by flipping the MSB) */ flagval = *(signed char *) (nullflagval); for (ii = tilelen - 1; ii >= 0; ii--) { if (sbbuff[ii] == (signed char) flagval) sbbuff[ii] = (signed char) nullval; else sbbuff[ii] = (sbbuff[ii]) ^ 0x80; } } else { /* just offset the pixel values (by flipping the MSB) */ for (ii = tilelen - 1; ii >= 0; ii--) sbbuff[ii] = (sbbuff[ii]) ^ 0x80; } } else { /* have to convert to int if using HCOMPRESS or PLIO */ *intlength = 4; if (nullcheck == 1) { /* reset pixels equal to flagval to the FITS null value, prior to compression */ flagval = *(signed char *) (nullflagval); for (ii = tilelen - 1; ii >= 0; ii--) { if (sbbuff[ii] == (signed char) flagval) idata[ii] = nullval; else idata[ii] = ((int) sbbuff[ii]) + 128; } } else { /* just do the data type conversion to int */ for (ii = tilelen - 1; ii >= 0; ii--) idata[ii] = ((int) sbbuff[ii]) + 128; } } return(*status); } /*--------------------------------------------------------------------------*/ int imcomp_convert_tile_tfloat( fitsfile *outfptr, long row, void *tiledata, long tilelen, long tilenx, long tileny, int nullcheck, void *nullflagval, int nullval, int zbitpix, double scale, double zero, int *intlength, int *flag, double *bscale, double *bzero, int *status) { /* Prepare the input tile array of pixels for compression. */ /* Convert input float tile array in place to 4 or 8-byte ints for compression, */ /* If needed, convert 4 or 8-byte ints and do null value substitution. */ /* Note that the calling routine must have allocated the input array big enough */ /* to be able to do this. */ int *idata; long irow, ii; float floatnull; unsigned char *usbbuff; unsigned long dithersum; int iminval = 0, imaxval = 0; /* min and max quantized integers */ /* datatype of input array is double. We only support writing this datatype to a FITS image with BITPIX = -64 or -32, except we also support the special case where BITPIX = 32 and BZERO = 0 and BSCALE = 1. */ if ((zbitpix != LONG_IMG && zbitpix != DOUBLE_IMG && zbitpix != FLOAT_IMG) || scale != 1.0 || zero != 0.) { ffpmsg("Implicit datatype conversion is not supported when writing to compressed images"); return(*status = DATA_COMPRESSION_ERR); } *intlength = 4; idata = (int *) tiledata; /* if the tile-compressed table contains zscale and zzero columns */ /* then scale and quantize the input floating point data. */ if ((outfptr->Fptr)->cn_zscale > 0) { /* quantize the float values into integers */ if (nullcheck == 1) floatnull = *(float *) (nullflagval); else floatnull = FLOATNULLVALUE; /* NaNs are represented by this, by default */ if ((outfptr->Fptr)->quantize_method == SUBTRACTIVE_DITHER_1 || (outfptr->Fptr)->quantize_method == SUBTRACTIVE_DITHER_2) { /* see if the dithering offset value needs to be initialized */ if ((outfptr->Fptr)->request_dither_seed == 0 && (outfptr->Fptr)->dither_seed == 0) { /* This means randomly choose the dithering offset based on the system time. */ /* The offset will have a value between 1 and 10000, inclusive. */ /* The time function returns an integer value that is incremented each second. */ /* The clock function returns the elapsed CPU time, in integer CLOCKS_PER_SEC units. */ /* The CPU time returned by clock is typically (on linux PC) only good to 0.01 sec */ /* Summing the 2 quantities may help avoid cases where 2 executions of the program */ /* (perhaps in a multithreaded environoment) end up with exactly the same dither seed */ /* value. The sum is incremented by the current HDU number in the file to provide */ /* further randomization. This randomization is desireable if multiple compressed */ /* images will be summed (or differenced). In such cases, the benefits of dithering */ /* may be lost if all the images use exactly the same sequence of random numbers when */ /* calculating the dithering offsets. */ (outfptr->Fptr)->dither_seed = (( (int)time(NULL) + ( (int) clock() / (int) (CLOCKS_PER_SEC / 100)) + (outfptr->Fptr)->curhdu) % 10000) + 1; /* update the header keyword with this new value */ fits_update_key(outfptr, TINT, "ZDITHER0", &((outfptr->Fptr)->dither_seed), NULL, status); } else if ((outfptr->Fptr)->request_dither_seed < 0 && (outfptr->Fptr)->dither_seed < 0) { /* this means randomly choose the dithering offset based on some hash function */ /* of the first input tile of data to be quantized and compressed. This ensures that */ /* the same offset value is used for a given image every time it is compressed. */ usbbuff = (unsigned char *) tiledata; dithersum = 0; for (ii = 0; ii < 4 * tilelen; ii++) { dithersum += usbbuff[ii]; /* doesn't matter if there is an integer overflow */ } (outfptr->Fptr)->dither_seed = ((int) (dithersum % 10000)) + 1; /* update the header keyword with this new value */ fits_update_key(outfptr, TINT, "ZDITHER0", &((outfptr->Fptr)->dither_seed), NULL, status); } /* subtract 1 to convert from 1-based to 0-based element number */ irow = row + (outfptr->Fptr)->dither_seed - 1; /* dither the quantized values */ } else if ((outfptr->Fptr)->quantize_method == -1) { irow = 0; /* do not dither the quantized values */ } else { ffpmsg("Unknown dithering method."); ffpmsg("May need to install a newer version of CFITSIO."); return(*status = DATA_COMPRESSION_ERR); } *flag = fits_quantize_float (irow, (float *) tiledata, tilenx, tileny, nullcheck, floatnull, (outfptr->Fptr)->quantize_level, (outfptr->Fptr)->quantize_method, idata, bscale, bzero, &iminval, &imaxval); if (*flag > 1) return(*status = *flag); } else if ((outfptr->Fptr)->quantize_level != NO_QUANTIZE) { /* if floating point pixels are not being losslessly compressed, then */ /* input float data is implicitly converted (truncated) to integers */ if ((scale != 1. || zero != 0.)) /* must scale the values */ imcomp_nullscalefloats((float *) tiledata, tilelen, idata, scale, zero, nullcheck, *(float *) (nullflagval), nullval, status); else imcomp_nullfloats((float *) tiledata, tilelen, idata, nullcheck, *(float *) (nullflagval), nullval, status); } else if ((outfptr->Fptr)->quantize_level == NO_QUANTIZE) { /* just convert null values to NaNs in place, if necessary, then do lossless gzip compression */ if (nullcheck == 1) { imcomp_float2nan((float *) tiledata, tilelen, (int *) tiledata, *(float *) (nullflagval), status); } } return(*status); } /*--------------------------------------------------------------------------*/ int imcomp_convert_tile_tdouble( fitsfile *outfptr, long row, void *tiledata, long tilelen, long tilenx, long tileny, int nullcheck, void *nullflagval, int nullval, int zbitpix, double scale, double zero, int *intlength, int *flag, double *bscale, double *bzero, int *status) { /* Prepare the input tile array of pixels for compression. */ /* Convert input double tile array in place to 4-byte ints for compression, */ /* If needed, convert 4 or 8-byte ints and do null value substitution. */ /* Note that the calling routine must have allocated the input array big enough */ /* to be able to do this. */ int *idata; long irow, ii; double doublenull; unsigned char *usbbuff; unsigned long dithersum; int iminval = 0, imaxval = 0; /* min and max quantized integers */ /* datatype of input array is double. We only support writing this datatype to a FITS image with BITPIX = -64 or -32, except we also support the special case where BITPIX = 32 and BZERO = 0 and BSCALE = 1. */ if ((zbitpix != LONG_IMG && zbitpix != DOUBLE_IMG && zbitpix != FLOAT_IMG) || scale != 1.0 || zero != 0.) { ffpmsg("Implicit datatype conversion is not supported when writing to compressed images"); return(*status = DATA_COMPRESSION_ERR); } *intlength = 4; idata = (int *) tiledata; /* if the tile-compressed table contains zscale and zzero columns */ /* then scale and quantize the input floating point data. */ /* Otherwise, just truncate the floats to integers. */ if ((outfptr->Fptr)->cn_zscale > 0) { if (nullcheck == 1) doublenull = *(double *) (nullflagval); else doublenull = DOUBLENULLVALUE; /* quantize the double values into integers */ if ((outfptr->Fptr)->quantize_method == SUBTRACTIVE_DITHER_1 || (outfptr->Fptr)->quantize_method == SUBTRACTIVE_DITHER_2) { /* see if the dithering offset value needs to be initialized (see above) */ if ((outfptr->Fptr)->request_dither_seed == 0 && (outfptr->Fptr)->dither_seed == 0) { (outfptr->Fptr)->dither_seed = (( (int)time(NULL) + ( (int) clock() / (int) (CLOCKS_PER_SEC / 100)) + (outfptr->Fptr)->curhdu) % 10000) + 1; /* update the header keyword with this new value */ fits_update_key(outfptr, TINT, "ZDITHER0", &((outfptr->Fptr)->dither_seed), NULL, status); } else if ((outfptr->Fptr)->request_dither_seed < 0 && (outfptr->Fptr)->dither_seed < 0) { usbbuff = (unsigned char *) tiledata; dithersum = 0; for (ii = 0; ii < 8 * tilelen; ii++) { dithersum += usbbuff[ii]; } (outfptr->Fptr)->dither_seed = ((int) (dithersum % 10000)) + 1; /* update the header keyword with this new value */ fits_update_key(outfptr, TINT, "ZDITHER0", &((outfptr->Fptr)->dither_seed), NULL, status); } irow = row + (outfptr->Fptr)->dither_seed - 1; /* dither the quantized values */ } else if ((outfptr->Fptr)->quantize_method == -1) { irow = 0; /* do not dither the quantized values */ } else { ffpmsg("Unknown subtractive dithering method."); ffpmsg("May need to install a newer version of CFITSIO."); return(*status = DATA_COMPRESSION_ERR); } *flag = fits_quantize_double (irow, (double *) tiledata, tilenx, tileny, nullcheck, doublenull, (outfptr->Fptr)->quantize_level, (outfptr->Fptr)->quantize_method, idata, bscale, bzero, &iminval, &imaxval); if (*flag > 1) return(*status = *flag); } else if ((outfptr->Fptr)->quantize_level != NO_QUANTIZE) { /* if floating point pixels are not being losslessly compressed, then */ /* input float data is implicitly converted (truncated) to integers */ if ((scale != 1. || zero != 0.)) /* must scale the values */ imcomp_nullscaledoubles((double *) tiledata, tilelen, idata, scale, zero, nullcheck, *(double *) (nullflagval), nullval, status); else imcomp_nulldoubles((double *) tiledata, tilelen, idata, nullcheck, *(double *) (nullflagval), nullval, status); } else if ((outfptr->Fptr)->quantize_level == NO_QUANTIZE) { /* just convert null values to NaNs in place, if necessary, then do lossless gzip compression */ if (nullcheck == 1) { imcomp_double2nan((double *) tiledata, tilelen, (LONGLONG *) tiledata, *(double *) (nullflagval), status); } } return(*status); } /*---------------------------------------------------------------------------*/ int imcomp_nullscale( int *idata, long tilelen, int nullflagval, int nullval, double scale, double zero, int *status) /* do null value substitution AND scaling of the integer array. If array value = nullflagval, then set the value to nullval. Otherwise, inverse scale the integer value. */ { long ii; double dvalue; for (ii=0; ii < tilelen; ii++) { if (idata[ii] == nullflagval) idata[ii] = nullval; else { dvalue = (idata[ii] - zero) / scale; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; idata[ii] = INT32_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; idata[ii] = INT32_MAX; } else { if (dvalue >= 0) idata[ii] = (int) (dvalue + .5); else idata[ii] = (int) (dvalue - .5); } } } return(*status); } /*---------------------------------------------------------------------------*/ int imcomp_nullvalues( int *idata, long tilelen, int nullflagval, int nullval, int *status) /* do null value substitution. If array value = nullflagval, then set the value to nullval. */ { long ii; for (ii=0; ii < tilelen; ii++) { if (idata[ii] == nullflagval) idata[ii] = nullval; } return(*status); } /*---------------------------------------------------------------------------*/ int imcomp_scalevalues( int *idata, long tilelen, double scale, double zero, int *status) /* do inverse scaling the integer values. */ { long ii; double dvalue; for (ii=0; ii < tilelen; ii++) { dvalue = (idata[ii] - zero) / scale; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; idata[ii] = INT32_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; idata[ii] = INT32_MAX; } else { if (dvalue >= 0) idata[ii] = (int) (dvalue + .5); else idata[ii] = (int) (dvalue - .5); } } return(*status); } /*---------------------------------------------------------------------------*/ int imcomp_nullscalei2( short *idata, long tilelen, short nullflagval, short nullval, double scale, double zero, int *status) /* do null value substitution AND scaling of the integer array. If array value = nullflagval, then set the value to nullval. Otherwise, inverse scale the integer value. */ { long ii; double dvalue; for (ii=0; ii < tilelen; ii++) { if (idata[ii] == nullflagval) idata[ii] = nullval; else { dvalue = (idata[ii] - zero) / scale; if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; idata[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; idata[ii] = SHRT_MAX; } else { if (dvalue >= 0) idata[ii] = (int) (dvalue + .5); else idata[ii] = (int) (dvalue - .5); } } } return(*status); } /*---------------------------------------------------------------------------*/ int imcomp_nullvaluesi2( short *idata, long tilelen, short nullflagval, short nullval, int *status) /* do null value substitution. If array value = nullflagval, then set the value to nullval. */ { long ii; for (ii=0; ii < tilelen; ii++) { if (idata[ii] == nullflagval) idata[ii] = nullval; } return(*status); } /*---------------------------------------------------------------------------*/ int imcomp_scalevaluesi2( short *idata, long tilelen, double scale, double zero, int *status) /* do inverse scaling the integer values. */ { long ii; double dvalue; for (ii=0; ii < tilelen; ii++) { dvalue = (idata[ii] - zero) / scale; if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; idata[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; idata[ii] = SHRT_MAX; } else { if (dvalue >= 0) idata[ii] = (int) (dvalue + .5); else idata[ii] = (int) (dvalue - .5); } } return(*status); } /*---------------------------------------------------------------------------*/ int imcomp_nullfloats( float *fdata, long tilelen, int *idata, int nullcheck, float nullflagval, int nullval, int *status) /* do null value substitution of the float array. If array value = nullflagval, then set the output value to FLOATNULLVALUE. */ { long ii; double dvalue; if (nullcheck == 1) /* must check for null values */ { for (ii=0; ii < tilelen; ii++) { if (fdata[ii] == nullflagval) idata[ii] = nullval; else { dvalue = fdata[ii]; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; idata[ii] = INT32_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; idata[ii] = INT32_MAX; } else { if (dvalue >= 0) idata[ii] = (int) (dvalue + .5); else idata[ii] = (int) (dvalue - .5); } } } } else /* don't have to worry about null values */ { for (ii=0; ii < tilelen; ii++) { dvalue = fdata[ii]; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; idata[ii] = INT32_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; idata[ii] = INT32_MAX; } else { if (dvalue >= 0) idata[ii] = (int) (dvalue + .5); else idata[ii] = (int) (dvalue - .5); } } } return(*status); } /*---------------------------------------------------------------------------*/ int imcomp_nullscalefloats( float *fdata, long tilelen, int *idata, double scale, double zero, int nullcheck, float nullflagval, int nullval, int *status) /* do null value substitution of the float array. If array value = nullflagval, then set the output value to FLOATNULLVALUE. Otherwise, inverse scale the integer value. */ { long ii; double dvalue; if (nullcheck == 1) /* must check for null values */ { for (ii=0; ii < tilelen; ii++) { if (fdata[ii] == nullflagval) idata[ii] = nullval; else { dvalue = (fdata[ii] - zero) / scale; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; idata[ii] = INT32_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; idata[ii] = INT32_MAX; } else { if (dvalue >= 0.) idata[ii] = (int) (dvalue + .5); else idata[ii] = (int) (dvalue - .5); } } } } else /* don't have to worry about null values */ { for (ii=0; ii < tilelen; ii++) { dvalue = (fdata[ii] - zero) / scale; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; idata[ii] = INT32_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; idata[ii] = INT32_MAX; } else { if (dvalue >= 0.) idata[ii] = (int) (dvalue + .5); else idata[ii] = (int) (dvalue - .5); } } } return(*status); } /*---------------------------------------------------------------------------*/ int imcomp_nulldoubles( double *fdata, long tilelen, int *idata, int nullcheck, double nullflagval, int nullval, int *status) /* do null value substitution of the float array. If array value = nullflagval, then set the output value to FLOATNULLVALUE. Otherwise, inverse scale the integer value. */ { long ii; double dvalue; if (nullcheck == 1) /* must check for null values */ { for (ii=0; ii < tilelen; ii++) { if (fdata[ii] == nullflagval) idata[ii] = nullval; else { dvalue = fdata[ii]; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; idata[ii] = INT32_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; idata[ii] = INT32_MAX; } else { if (dvalue >= 0.) idata[ii] = (int) (dvalue + .5); else idata[ii] = (int) (dvalue - .5); } } } } else /* don't have to worry about null values */ { for (ii=0; ii < tilelen; ii++) { dvalue = fdata[ii]; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; idata[ii] = INT32_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; idata[ii] = INT32_MAX; } else { if (dvalue >= 0.) idata[ii] = (int) (dvalue + .5); else idata[ii] = (int) (dvalue - .5); } } } return(*status); } /*---------------------------------------------------------------------------*/ int imcomp_nullscaledoubles( double *fdata, long tilelen, int *idata, double scale, double zero, int nullcheck, double nullflagval, int nullval, int *status) /* do null value substitution of the float array. If array value = nullflagval, then set the output value to FLOATNULLVALUE. Otherwise, inverse scale the integer value. */ { long ii; double dvalue; if (nullcheck == 1) /* must check for null values */ { for (ii=0; ii < tilelen; ii++) { if (fdata[ii] == nullflagval) idata[ii] = nullval; else { dvalue = (fdata[ii] - zero) / scale; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; idata[ii] = INT32_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; idata[ii] = INT32_MAX; } else { if (dvalue >= 0.) idata[ii] = (int) (dvalue + .5); else idata[ii] = (int) (dvalue - .5); } } } } else /* don't have to worry about null values */ { for (ii=0; ii < tilelen; ii++) { dvalue = (fdata[ii] - zero) / scale; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; idata[ii] = INT32_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; idata[ii] = INT32_MAX; } else { if (dvalue >= 0.) idata[ii] = (int) (dvalue + .5); else idata[ii] = (int) (dvalue - .5); } } } return(*status); } /*---------------------------------------------------------------------------*/ int fits_write_compressed_img(fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the array to be written */ long *infpixel, /* I - 'bottom left corner' of the subsection */ long *inlpixel, /* I - 'top right corner' of the subsection */ int nullcheck, /* I - 0 for no null checking */ /* 1: pixels that are = nullval will be */ /* written with the FITS null pixel value */ /* (floating point arrays only) */ void *array, /* I - array of values to be written */ void *nullval, /* I - undefined pixel value */ int *status) /* IO - error status */ /* Write a section of a compressed image. */ { int tiledim[MAX_COMPRESS_DIM]; long naxis[MAX_COMPRESS_DIM]; long tilesize[MAX_COMPRESS_DIM], thistilesize[MAX_COMPRESS_DIM]; long ftile[MAX_COMPRESS_DIM], ltile[MAX_COMPRESS_DIM]; long tfpixel[MAX_COMPRESS_DIM], tlpixel[MAX_COMPRESS_DIM]; long rowdim[MAX_COMPRESS_DIM], offset[MAX_COMPRESS_DIM],ntemp; long fpixel[MAX_COMPRESS_DIM], lpixel[MAX_COMPRESS_DIM]; long i5, i4, i3, i2, i1, i0, irow; int ii, ndim, pixlen, tilenul; int tstatus, buffpixsiz; void *buffer; char *bnullarray = 0, card[FLEN_CARD]; if (*status > 0) return(*status); if (!fits_is_compressed_image(fptr, status) ) { ffpmsg("CHDU is not a compressed image (fits_write_compressed_img)"); return(*status = DATA_COMPRESSION_ERR); } /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); /* rescan header if data structure is undefined */ else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) return(*status); /* ===================================================================== */ if (datatype == TSHORT || datatype == TUSHORT) { pixlen = sizeof(short); } else if (datatype == TINT || datatype == TUINT) { pixlen = sizeof(int); } else if (datatype == TBYTE || datatype == TSBYTE) { pixlen = 1; } else if (datatype == TLONG || datatype == TULONG) { pixlen = sizeof(long); } else if (datatype == TFLOAT) { pixlen = sizeof(float); } else if (datatype == TDOUBLE) { pixlen = sizeof(double); } else { ffpmsg("unsupported datatype for compressing image"); return(*status = BAD_DATATYPE); } /* ===================================================================== */ /* allocate scratch space for processing one tile of the image */ buffpixsiz = pixlen; /* this is the minimum pixel size */ if ( (fptr->Fptr)->compress_type == HCOMPRESS_1) { /* need 4 or 8 bytes per pixel */ if ((fptr->Fptr)->zbitpix == BYTE_IMG || (fptr->Fptr)->zbitpix == SHORT_IMG ) buffpixsiz = maxvalue(buffpixsiz, 4); else buffpixsiz = 8; } else if ( (fptr->Fptr)->compress_type == PLIO_1) { /* need 4 bytes per pixel */ buffpixsiz = maxvalue(buffpixsiz, 4); } else if ( (fptr->Fptr)->compress_type == RICE_1 || (fptr->Fptr)->compress_type == GZIP_1 || (fptr->Fptr)->compress_type == GZIP_2 || (fptr->Fptr)->compress_type == BZIP2_1) { /* need 1, 2, or 4 bytes per pixel */ if ((fptr->Fptr)->zbitpix == BYTE_IMG) buffpixsiz = maxvalue(buffpixsiz, 1); else if ((fptr->Fptr)->zbitpix == SHORT_IMG) buffpixsiz = maxvalue(buffpixsiz, 2); else buffpixsiz = maxvalue(buffpixsiz, 4); } else { ffpmsg("unsupported image compression algorithm"); return(*status = BAD_DATATYPE); } /* cast to double to force alignment on 8-byte addresses */ buffer = (double *) calloc ((fptr->Fptr)->maxtilelen, buffpixsiz); if (buffer == NULL) { ffpmsg("Out of memory (fits_write_compress_img)"); return (*status = MEMORY_ALLOCATION); } /* ===================================================================== */ /* initialize all the arrays */ for (ii = 0; ii < MAX_COMPRESS_DIM; ii++) { naxis[ii] = 1; tiledim[ii] = 1; tilesize[ii] = 1; ftile[ii] = 1; ltile[ii] = 1; rowdim[ii] = 1; } ndim = (fptr->Fptr)->zndim; ntemp = 1; for (ii = 0; ii < ndim; ii++) { fpixel[ii] = infpixel[ii]; lpixel[ii] = inlpixel[ii]; /* calc number of tiles in each dimension, and tile containing */ /* the first and last pixel we want to read in each dimension */ naxis[ii] = (fptr->Fptr)->znaxis[ii]; if (fpixel[ii] < 1) { free(buffer); return(*status = BAD_PIX_NUM); } tilesize[ii] = (fptr->Fptr)->tilesize[ii]; tiledim[ii] = (naxis[ii] - 1) / tilesize[ii] + 1; ftile[ii] = (fpixel[ii] - 1) / tilesize[ii] + 1; ltile[ii] = minvalue((lpixel[ii] - 1) / tilesize[ii] + 1, tiledim[ii]); rowdim[ii] = ntemp; /* total tiles in each dimension */ ntemp *= tiledim[ii]; } /* support up to 6 dimensions for now */ /* tfpixel and tlpixel are the first and last image pixels */ /* along each dimension of the compression tile */ for (i5 = ftile[5]; i5 <= ltile[5]; i5++) { tfpixel[5] = (i5 - 1) * tilesize[5] + 1; tlpixel[5] = minvalue(tfpixel[5] + tilesize[5] - 1, naxis[5]); thistilesize[5] = tlpixel[5] - tfpixel[5] + 1; offset[5] = (i5 - 1) * rowdim[5]; for (i4 = ftile[4]; i4 <= ltile[4]; i4++) { tfpixel[4] = (i4 - 1) * tilesize[4] + 1; tlpixel[4] = minvalue(tfpixel[4] + tilesize[4] - 1, naxis[4]); thistilesize[4] = thistilesize[5] * (tlpixel[4] - tfpixel[4] + 1); offset[4] = (i4 - 1) * rowdim[4] + offset[5]; for (i3 = ftile[3]; i3 <= ltile[3]; i3++) { tfpixel[3] = (i3 - 1) * tilesize[3] + 1; tlpixel[3] = minvalue(tfpixel[3] + tilesize[3] - 1, naxis[3]); thistilesize[3] = thistilesize[4] * (tlpixel[3] - tfpixel[3] + 1); offset[3] = (i3 - 1) * rowdim[3] + offset[4]; for (i2 = ftile[2]; i2 <= ltile[2]; i2++) { tfpixel[2] = (i2 - 1) * tilesize[2] + 1; tlpixel[2] = minvalue(tfpixel[2] + tilesize[2] - 1, naxis[2]); thistilesize[2] = thistilesize[3] * (tlpixel[2] - tfpixel[2] + 1); offset[2] = (i2 - 1) * rowdim[2] + offset[3]; for (i1 = ftile[1]; i1 <= ltile[1]; i1++) { tfpixel[1] = (i1 - 1) * tilesize[1] + 1; tlpixel[1] = minvalue(tfpixel[1] + tilesize[1] - 1, naxis[1]); thistilesize[1] = thistilesize[2] * (tlpixel[1] - tfpixel[1] + 1); offset[1] = (i1 - 1) * rowdim[1] + offset[2]; for (i0 = ftile[0]; i0 <= ltile[0]; i0++) { tfpixel[0] = (i0 - 1) * tilesize[0] + 1; tlpixel[0] = minvalue(tfpixel[0] + tilesize[0] - 1, naxis[0]); thistilesize[0] = thistilesize[1] * (tlpixel[0] - tfpixel[0] + 1); /* calculate row of table containing this tile */ irow = i0 + offset[1]; /* read and uncompress this row (tile) of the table */ /* also do type conversion and undefined pixel substitution */ /* at this point */ imcomp_decompress_tile(fptr, irow, thistilesize[0], datatype, nullcheck, nullval, buffer, bnullarray, &tilenul, status); if (*status == NO_COMPRESSED_TILE) { /* tile doesn't exist, so initialize to zero */ memset(buffer, 0, pixlen * thistilesize[0]); *status = 0; } /* copy the intersecting pixels to this tile from the input */ imcomp_merge_overlap(buffer, pixlen, ndim, tfpixel, tlpixel, bnullarray, array, fpixel, lpixel, nullcheck, status); /* compress the tile again, and write it back to the FITS file */ imcomp_compress_tile (fptr, irow, datatype, buffer, thistilesize[0], tlpixel[0] - tfpixel[0] + 1, tlpixel[1] - tfpixel[1] + 1, nullcheck, nullval, status); } } } } } } free(buffer); if ((fptr->Fptr)->zbitpix < 0 && nullcheck != 0) { /* This is a floating point FITS image with possible null values. It is too messy to test if any null values are actually written, so just assume so. We need to make sure that the ZBLANK keyword is present in the compressed image header. If it is not there then we need to insert the keyword. */ tstatus = 0; ffgcrd(fptr, "ZBLANK", card, &tstatus); if (tstatus) { /* have to insert the ZBLANK keyword */ ffgcrd(fptr, "ZCMPTYPE", card, status); ffikyj(fptr, "ZBLANK", COMPRESS_NULL_VALUE, "null value in the compressed integer array", status); /* set this value into the internal structure; it is used if */ /* the program reads back the values from the array */ (fptr->Fptr)->zblank = COMPRESS_NULL_VALUE; (fptr->Fptr)->cn_zblank = -1; /* flag for a constant ZBLANK */ } } return(*status); } /*--------------------------------------------------------------------------*/ int fits_write_compressed_pixels(fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the array to be written */ LONGLONG fpixel, /* I - 'first pixel to write */ LONGLONG npixel, /* I - number of pixels to write */ int nullcheck, /* I - 0 for no null checking */ /* 1: pixels that are = nullval will be */ /* written with the FITS null pixel value */ /* (floating point arrays only) */ void *array, /* I - array of values to write */ void *nullval, /* I - value used to represent undefined pixels*/ int *status) /* IO - error status */ /* Write a consecutive set of pixels to a compressed image. This routine interpretes the n-dimensional image as a long one-dimensional array. This is actually a rather inconvenient way to write compressed images in general, and could be rather inefficient if the requested pixels to be written are located in many different image compression tiles. The general strategy used here is to write the requested pixels in blocks that correspond to rectangular image sections. */ { int naxis, ii, bytesperpixel; long naxes[MAX_COMPRESS_DIM], nread; LONGLONG tfirst, tlast, last0, last1, dimsize[MAX_COMPRESS_DIM]; long nplane, firstcoord[MAX_COMPRESS_DIM], lastcoord[MAX_COMPRESS_DIM]; char *arrayptr; if (*status > 0) return(*status); arrayptr = (char *) array; /* get size of array pixels, in bytes */ bytesperpixel = ffpxsz(datatype); for (ii = 0; ii < MAX_COMPRESS_DIM; ii++) { naxes[ii] = 1; firstcoord[ii] = 0; lastcoord[ii] = 0; } /* determine the dimensions of the image to be written */ ffgidm(fptr, &naxis, status); ffgisz(fptr, MAX_COMPRESS_DIM, naxes, status); /* calc the cumulative number of pixels in each successive dimension */ dimsize[0] = 1; for (ii = 1; ii < MAX_COMPRESS_DIM; ii++) dimsize[ii] = dimsize[ii - 1] * naxes[ii - 1]; /* determine the coordinate of the first and last pixel in the image */ /* Use zero based indexes here */ tfirst = fpixel - 1; tlast = tfirst + npixel - 1; for (ii = naxis - 1; ii >= 0; ii--) { firstcoord[ii] = (long) (tfirst / dimsize[ii]); lastcoord[ii] = (long) (tlast / dimsize[ii]); tfirst = tfirst - firstcoord[ii] * dimsize[ii]; tlast = tlast - lastcoord[ii] * dimsize[ii]; } /* to simplify things, treat 1-D, 2-D, and 3-D images as separate cases */ if (naxis == 1) { /* Simple: just write the requested range of pixels */ firstcoord[0] = firstcoord[0] + 1; lastcoord[0] = lastcoord[0] + 1; fits_write_compressed_img(fptr, datatype, firstcoord, lastcoord, nullcheck, array, nullval, status); return(*status); } else if (naxis == 2) { nplane = 0; /* write 1st (and only) plane of the image */ fits_write_compressed_img_plane(fptr, datatype, bytesperpixel, nplane, firstcoord, lastcoord, naxes, nullcheck, array, nullval, &nread, status); } else if (naxis == 3) { /* test for special case: writing an integral number of planes */ if (firstcoord[0] == 0 && firstcoord[1] == 0 && lastcoord[0] == naxes[0] - 1 && lastcoord[1] == naxes[1] - 1) { for (ii = 0; ii < MAX_COMPRESS_DIM; ii++) { /* convert from zero base to 1 base */ (firstcoord[ii])++; (lastcoord[ii])++; } /* we can write the contiguous block of pixels in one go */ fits_write_compressed_img(fptr, datatype, firstcoord, lastcoord, nullcheck, array, nullval, status); return(*status); } /* save last coordinate in temporary variables */ last0 = lastcoord[0]; last1 = lastcoord[1]; if (firstcoord[2] < lastcoord[2]) { /* we will write up to the last pixel in all but the last plane */ lastcoord[0] = naxes[0] - 1; lastcoord[1] = naxes[1] - 1; } /* write one plane of the cube at a time, for simplicity */ for (nplane = firstcoord[2]; nplane <= lastcoord[2]; nplane++) { if (nplane == lastcoord[2]) { lastcoord[0] = (long) last0; lastcoord[1] = (long) last1; } fits_write_compressed_img_plane(fptr, datatype, bytesperpixel, nplane, firstcoord, lastcoord, naxes, nullcheck, arrayptr, nullval, &nread, status); /* for all subsequent planes, we start with the first pixel */ firstcoord[0] = 0; firstcoord[1] = 0; /* increment pointers to next elements to be written */ arrayptr = arrayptr + nread * bytesperpixel; } } else { ffpmsg("only 1D, 2D, or 3D images are currently supported"); return(*status = DATA_COMPRESSION_ERR); } return(*status); } /*--------------------------------------------------------------------------*/ int fits_write_compressed_img_plane(fitsfile *fptr, /* I - FITS file */ int datatype, /* I - datatype of the array to be written */ int bytesperpixel, /* I - number of bytes per pixel in array */ long nplane, /* I - which plane of the cube to write */ long *firstcoord, /* I coordinate of first pixel to write */ long *lastcoord, /* I coordinate of last pixel to write */ long *naxes, /* I size of each image dimension */ int nullcheck, /* I - 0 for no null checking */ /* 1: pixels that are = nullval will be */ /* written with the FITS null pixel value */ /* (floating point arrays only) */ void *array, /* I - array of values that are written */ void *nullval, /* I - value for undefined pixels */ long *nread, /* O - total number of pixels written */ int *status) /* IO - error status */ /* in general we have to write the first partial row of the image, followed by the middle complete rows, followed by the last partial row of the image. If the first or last rows are complete, then write them at the same time as all the middle rows. */ { /* bottom left coord. and top right coord. */ long blc[MAX_COMPRESS_DIM], trc[MAX_COMPRESS_DIM]; char *arrayptr; *nread = 0; arrayptr = (char *) array; blc[2] = nplane + 1; trc[2] = nplane + 1; if (firstcoord[0] != 0) { /* have to read a partial first row */ blc[0] = firstcoord[0] + 1; blc[1] = firstcoord[1] + 1; trc[1] = blc[1]; if (lastcoord[1] == firstcoord[1]) trc[0] = lastcoord[0] + 1; /* 1st and last pixels in same row */ else trc[0] = naxes[0]; /* read entire rest of the row */ fits_write_compressed_img(fptr, datatype, blc, trc, nullcheck, arrayptr, nullval, status); *nread = *nread + trc[0] - blc[0] + 1; if (lastcoord[1] == firstcoord[1]) { return(*status); /* finished */ } /* set starting coord to beginning of next line */ firstcoord[0] = 0; firstcoord[1] += 1; arrayptr = arrayptr + (trc[0] - blc[0] + 1) * bytesperpixel; } /* write contiguous complete rows of the image, if any */ blc[0] = 1; blc[1] = firstcoord[1] + 1; trc[0] = naxes[0]; if (lastcoord[0] + 1 == naxes[0]) { /* can write the last complete row, too */ trc[1] = lastcoord[1] + 1; } else { /* last row is incomplete; have to read it separately */ trc[1] = lastcoord[1]; } if (trc[1] >= blc[1]) /* must have at least one whole line to read */ { fits_write_compressed_img(fptr, datatype, blc, trc, nullcheck, arrayptr, nullval, status); *nread = *nread + (trc[1] - blc[1] + 1) * naxes[0]; if (lastcoord[1] + 1 == trc[1]) return(*status); /* finished */ /* increment pointers for the last partial row */ arrayptr = arrayptr + (trc[1] - blc[1] + 1) * naxes[0] * bytesperpixel; } if (trc[1] == lastcoord[1] + 1) return(*status); /* all done */ /* set starting and ending coord to last line */ trc[0] = lastcoord[0] + 1; trc[1] = lastcoord[1] + 1; blc[1] = trc[1]; fits_write_compressed_img(fptr, datatype, blc, trc, nullcheck, arrayptr, nullval, status); *nread = *nread + trc[0] - blc[0] + 1; return(*status); } /* ######################################################################## */ /* ### Image Decompression Routines ### */ /* ######################################################################## */ /*--------------------------------------------------------------------------*/ int fits_img_decompress (fitsfile *infptr, /* image (bintable) to uncompress */ fitsfile *outfptr, /* empty HDU for output uncompressed image */ int *status) /* IO - error status */ /* This routine decompresses the whole image and writes it to the output file. */ { int ii, datatype = 0; int nullcheck, anynul; LONGLONG fpixel[MAX_COMPRESS_DIM], lpixel[MAX_COMPRESS_DIM]; long inc[MAX_COMPRESS_DIM]; long imgsize; float *nulladdr, fnulval; double dnulval; if (fits_img_decompress_header(infptr, outfptr, status) > 0) { return (*status); } /* force a rescan of the output header keywords, then reset the scaling */ /* in case the BSCALE and BZERO keywords are present, so that the */ /* decompressed values won't be scaled when written to the output image */ ffrdef(outfptr, status); ffpscl(outfptr, 1.0, 0.0, status); ffpscl(infptr, 1.0, 0.0, status); /* initialize; no null checking is needed for integer images */ nullcheck = 0; nulladdr = &fnulval; /* determine datatype for image */ if ((infptr->Fptr)->zbitpix == BYTE_IMG) { datatype = TBYTE; } else if ((infptr->Fptr)->zbitpix == SHORT_IMG) { datatype = TSHORT; } else if ((infptr->Fptr)->zbitpix == LONG_IMG) { datatype = TINT; } else if ((infptr->Fptr)->zbitpix == FLOAT_IMG) { /* In the case of float images we must check for NaNs */ nullcheck = 1; fnulval = FLOATNULLVALUE; nulladdr = &fnulval; datatype = TFLOAT; } else if ((infptr->Fptr)->zbitpix == DOUBLE_IMG) { /* In the case of double images we must check for NaNs */ nullcheck = 1; dnulval = DOUBLENULLVALUE; nulladdr = (float *) &dnulval; datatype = TDOUBLE; } /* calculate size of the image (in pixels) */ imgsize = 1; for (ii = 0; ii < (infptr->Fptr)->zndim; ii++) { imgsize *= (infptr->Fptr)->znaxis[ii]; fpixel[ii] = 1; /* Set first and last pixel to */ lpixel[ii] = (infptr->Fptr)->znaxis[ii]; /* include the entire image. */ inc[ii] = 1; } /* uncompress the input image and write to output image, one tile at a time */ fits_read_write_compressed_img(infptr, datatype, fpixel, lpixel, inc, nullcheck, nulladdr, &anynul, outfptr, status); return (*status); } /*--------------------------------------------------------------------------*/ int fits_decompress_img (fitsfile *infptr, /* image (bintable) to uncompress */ fitsfile *outfptr, /* empty HDU for output uncompressed image */ int *status) /* IO - error status */ /* THIS IS AN OBSOLETE ROUTINE. USE fits_img_decompress instead!!! This routine decompresses the whole image and writes it to the output file. */ { double *data; int ii, datatype = 0, byte_per_pix = 0; int nullcheck, anynul; LONGLONG fpixel[MAX_COMPRESS_DIM], lpixel[MAX_COMPRESS_DIM]; long inc[MAX_COMPRESS_DIM]; long imgsize, memsize; float *nulladdr, fnulval; double dnulval; if (*status > 0) return(*status); if (!fits_is_compressed_image(infptr, status) ) { ffpmsg("CHDU is not a compressed image (fits_decompress_img)"); return(*status = DATA_DECOMPRESSION_ERR); } /* create an empty output image with the correct dimensions */ if (ffcrim(outfptr, (infptr->Fptr)->zbitpix, (infptr->Fptr)->zndim, (infptr->Fptr)->znaxis, status) > 0) { ffpmsg("error creating output decompressed image HDU"); return (*status); } /* Copy the table header to the image header. */ if (imcomp_copy_imheader(infptr, outfptr, status) > 0) { ffpmsg("error copying header of compressed image"); return (*status); } /* force a rescan of the output header keywords, then reset the scaling */ /* in case the BSCALE and BZERO keywords are present, so that the */ /* decompressed values won't be scaled when written to the output image */ ffrdef(outfptr, status); ffpscl(outfptr, 1.0, 0.0, status); ffpscl(infptr, 1.0, 0.0, status); /* initialize; no null checking is needed for integer images */ nullcheck = 0; nulladdr = &fnulval; /* determine datatype for image */ if ((infptr->Fptr)->zbitpix == BYTE_IMG) { datatype = TBYTE; byte_per_pix = 1; } else if ((infptr->Fptr)->zbitpix == SHORT_IMG) { datatype = TSHORT; byte_per_pix = sizeof(short); } else if ((infptr->Fptr)->zbitpix == LONG_IMG) { datatype = TINT; byte_per_pix = sizeof(int); } else if ((infptr->Fptr)->zbitpix == FLOAT_IMG) { /* In the case of float images we must check for NaNs */ nullcheck = 1; fnulval = FLOATNULLVALUE; nulladdr = &fnulval; datatype = TFLOAT; byte_per_pix = sizeof(float); } else if ((infptr->Fptr)->zbitpix == DOUBLE_IMG) { /* In the case of double images we must check for NaNs */ nullcheck = 1; dnulval = DOUBLENULLVALUE; nulladdr = (float *) &dnulval; datatype = TDOUBLE; byte_per_pix = sizeof(double); } /* calculate size of the image (in pixels) */ imgsize = 1; for (ii = 0; ii < (infptr->Fptr)->zndim; ii++) { imgsize *= (infptr->Fptr)->znaxis[ii]; fpixel[ii] = 1; /* Set first and last pixel to */ lpixel[ii] = (infptr->Fptr)->znaxis[ii]; /* include the entire image. */ inc[ii] = 1; } /* Calc equivalent number of double pixels same size as whole the image. */ /* We use double datatype to force the memory to be aligned properly */ memsize = ((imgsize * byte_per_pix) - 1) / sizeof(double) + 1; /* allocate memory for the image */ data = (double*) calloc (memsize, sizeof(double)); if (!data) { ffpmsg("Couldn't allocate memory for the uncompressed image"); return(*status = MEMORY_ALLOCATION); } /* uncompress the entire image into memory */ /* This routine should be enhanced sometime to only need enough */ /* memory to uncompress one tile at a time. */ fits_read_compressed_img(infptr, datatype, fpixel, lpixel, inc, nullcheck, nulladdr, data, NULL, &anynul, status); /* write the image to the output file */ if (anynul) fits_write_imgnull(outfptr, datatype, 1, imgsize, data, nulladdr, status); else fits_write_img(outfptr, datatype, 1, imgsize, data, status); free(data); return (*status); } /*--------------------------------------------------------------------------*/ int fits_img_decompress_header(fitsfile *infptr, /* image (bintable) to uncompress */ fitsfile *outfptr, /* empty HDU for output uncompressed image */ int *status) /* IO - error status */ /* This routine reads the header of the input tile compressed image and converts it to that of a standard uncompress FITS image. */ { int writeprime = 0; int hdupos, inhdupos, numkeys; int nullprime = 0, copyprime = 0, norec = 0, tstatus; char card[FLEN_CARD]; int ii, naxis, bitpix; long naxes[MAX_COMPRESS_DIM]; if (*status > 0) return(*status); else if (*status == -1) { *status = 0; writeprime = 1; } if (!fits_is_compressed_image(infptr, status) ) { ffpmsg("CHDU is not a compressed image (fits_img_decompress)"); return(*status = DATA_DECOMPRESSION_ERR); } /* get information about the state of the output file; does it already */ /* contain any keywords and HDUs? */ fits_get_hdu_num(infptr, &inhdupos); /* Get the current output HDU position */ fits_get_hdu_num(outfptr, &hdupos); /* Get the current output HDU position */ fits_get_hdrspace(outfptr, &numkeys, 0, status); /* Was the input compressed HDU originally the primary array image? */ tstatus = 0; if (!fits_read_card(infptr, "ZSIMPLE", card, &tstatus)) { /* yes, input HDU was a primary array (not an IMAGE extension) */ /* Now determine if we can uncompress it into the primary array of */ /* the output file. This is only possible if the output file */ /* currently only contains a null primary array, with no addition */ /* header keywords and with no following extension in the FITS file. */ if (hdupos == 1) { /* are we positioned at the primary array? */ if (numkeys == 0) { /* primary HDU is completely empty */ nullprime = 1; } else { fits_get_img_param(outfptr, MAX_COMPRESS_DIM, &bitpix, &naxis, naxes, status); if (naxis == 0) { /* is this a null image? */ nullprime = 1; if (inhdupos == 2) /* must be at the first extension */ copyprime = 1; } } } } if (nullprime) { /* We will delete the existing keywords in the null primary array and uncompress the input image into the primary array of the output. Some of these keywords may be added back to the uncompressed image header later. */ for (ii = numkeys; ii > 0; ii--) fits_delete_record(outfptr, ii, status); } else { /* if the ZTENSION keyword doesn't exist, then we have to write the required keywords manually */ tstatus = 0; if (fits_read_card(infptr, "ZTENSION", card, &tstatus)) { /* create an empty output image with the correct dimensions */ if (ffcrim(outfptr, (infptr->Fptr)->zbitpix, (infptr->Fptr)->zndim, (infptr->Fptr)->znaxis, status) > 0) { ffpmsg("error creating output decompressed image HDU"); return (*status); } norec = 1; /* the required keywords have already been written */ } else { /* the input compressed image does have ZTENSION keyword */ if (writeprime) { /* convert the image extension to a primary array */ /* have to write the required keywords manually */ /* create an empty output image with the correct dimensions */ if (ffcrim(outfptr, (infptr->Fptr)->zbitpix, (infptr->Fptr)->zndim, (infptr->Fptr)->znaxis, status) > 0) { ffpmsg("error creating output decompressed image HDU"); return (*status); } norec = 1; /* the required keywords have already been written */ } else { /* write the input compressed image to an image extension */ if (numkeys == 0) { /* the output file is currently completely empty */ /* In this case, the input is a compressed IMAGE extension. */ /* Since the uncompressed output file is currently completely empty, */ /* we need to write a null primary array before uncompressing the */ /* image extension */ ffcrim(outfptr, 8, 0, naxes, status); /* naxes is not used */ /* now create the empty extension to uncompress into */ if (fits_create_hdu(outfptr, status) > 0) { ffpmsg("error creating output decompressed image HDU"); return (*status); } } else { /* just create a new empty extension, then copy all the required */ /* keywords into it. */ fits_create_hdu(outfptr, status); } } } } if (*status > 0) { ffpmsg("error creating output decompressed image HDU"); return (*status); } /* Copy the table header to the image header. */ if (imcomp_copy_comp2img(infptr, outfptr, norec, status) > 0) { ffpmsg("error copying header keywords from compressed image"); } if (copyprime) { /* append any unexpected keywords from the primary array. This includes any keywords except SIMPLE, BITPIX, NAXIS, EXTEND, COMMENT, HISTORY, CHECKSUM, and DATASUM. */ fits_movabs_hdu(infptr, 1, NULL, status); /* move to primary array */ /* do this so that any new keywords get written before any blank keywords that may have been appended by imcomp_copy_comp2img */ fits_set_hdustruc(outfptr, status); if (imcomp_copy_prime2img(infptr, outfptr, status) > 0) { ffpmsg("error copying primary keywords from compressed file"); } fits_movabs_hdu(infptr, 2, NULL, status); /* move back to where we were */ } return (*status); } /*---------------------------------------------------------------------------*/ int fits_read_compressed_img(fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the array to be returned */ LONGLONG *infpixel, /* I - 'bottom left corner' of the subsection */ LONGLONG *inlpixel, /* I - 'top right corner' of the subsection */ long *ininc, /* I - increment to be applied in each dimension */ int nullcheck, /* I - 0 for no null checking */ /* 1: set undefined pixels = nullval */ /* 2: set nullarray=1 for undefined pixels */ void *nullval, /* I - value for undefined pixels */ void *array, /* O - array of values that are returned */ char *nullarray, /* O - array of flags = 1 if nullcheck = 2 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read a section of a compressed image; Note: lpixel may be larger than the size of the uncompressed image. Only the pixels within the image will be returned. */ { long naxis[MAX_COMPRESS_DIM], tiledim[MAX_COMPRESS_DIM]; long tilesize[MAX_COMPRESS_DIM], thistilesize[MAX_COMPRESS_DIM]; long ftile[MAX_COMPRESS_DIM], ltile[MAX_COMPRESS_DIM]; long tfpixel[MAX_COMPRESS_DIM], tlpixel[MAX_COMPRESS_DIM]; long rowdim[MAX_COMPRESS_DIM], offset[MAX_COMPRESS_DIM],ntemp; long fpixel[MAX_COMPRESS_DIM], lpixel[MAX_COMPRESS_DIM]; long inc[MAX_COMPRESS_DIM]; long i5, i4, i3, i2, i1, i0, irow; int ii, ndim, pixlen, tilenul; void *buffer; char *bnullarray = 0; double testnullval = 0.; if (*status > 0) return(*status); if (!fits_is_compressed_image(fptr, status) ) { ffpmsg("CHDU is not a compressed image (fits_read_compressed_img)"); return(*status = DATA_DECOMPRESSION_ERR); } /* get temporary space for uncompressing one image tile */ if (datatype == TSHORT) { buffer = malloc ((fptr->Fptr)->maxtilelen * sizeof (short)); pixlen = sizeof(short); if (nullval) testnullval = *(short *) nullval; } else if (datatype == TINT) { buffer = malloc ((fptr->Fptr)->maxtilelen * sizeof (int)); pixlen = sizeof(int); if (nullval) testnullval = *(int *) nullval; } else if (datatype == TLONG) { buffer = malloc ((fptr->Fptr)->maxtilelen * sizeof (long)); pixlen = sizeof(long); if (nullval) testnullval = *(long *) nullval; } else if (datatype == TFLOAT) { buffer = malloc ((fptr->Fptr)->maxtilelen * sizeof (float)); pixlen = sizeof(float); if (nullval) testnullval = *(float *) nullval; } else if (datatype == TDOUBLE) { buffer = malloc ((fptr->Fptr)->maxtilelen * sizeof (double)); pixlen = sizeof(double); if (nullval) testnullval = *(double *) nullval; } else if (datatype == TUSHORT) { buffer = malloc ((fptr->Fptr)->maxtilelen * sizeof (unsigned short)); pixlen = sizeof(short); if (nullval) testnullval = *(unsigned short *) nullval; } else if (datatype == TUINT) { buffer = malloc ((fptr->Fptr)->maxtilelen * sizeof (unsigned int)); pixlen = sizeof(int); if (nullval) testnullval = *(unsigned int *) nullval; } else if (datatype == TULONG) { buffer = malloc ((fptr->Fptr)->maxtilelen * sizeof (unsigned long)); pixlen = sizeof(long); if (nullval) testnullval = *(unsigned long *) nullval; } else if (datatype == TBYTE || datatype == TSBYTE) { buffer = malloc ((fptr->Fptr)->maxtilelen * sizeof (char)); pixlen = 1; if (nullval) testnullval = *(unsigned char *) nullval; } else { ffpmsg("unsupported datatype for uncompressing image"); return(*status = BAD_DATATYPE); } /* If nullcheck ==1 and nullval == 0, then this means that the */ /* calling routine does not want to check for null pixels in the array */ if (nullcheck == 1 && testnullval == 0.) nullcheck = 0; if (buffer == NULL) { ffpmsg("Out of memory (fits_read_compress_img)"); return (*status = MEMORY_ALLOCATION); } /* allocate memory for a null flag array, if needed */ if (nullcheck == 2) { bnullarray = calloc ((fptr->Fptr)->maxtilelen, sizeof (char)); if (bnullarray == NULL) { ffpmsg("Out of memory (fits_read_compress_img)"); free(buffer); return (*status = MEMORY_ALLOCATION); } } /* initialize all the arrays */ for (ii = 0; ii < MAX_COMPRESS_DIM; ii++) { naxis[ii] = 1; tiledim[ii] = 1; tilesize[ii] = 1; ftile[ii] = 1; ltile[ii] = 1; rowdim[ii] = 1; } ndim = (fptr->Fptr)->zndim; ntemp = 1; for (ii = 0; ii < ndim; ii++) { /* support for mirror-reversed image sections */ if (infpixel[ii] <= inlpixel[ii]) { fpixel[ii] = (long) infpixel[ii]; lpixel[ii] = (long) inlpixel[ii]; inc[ii] = ininc[ii]; } else { fpixel[ii] = (long) inlpixel[ii]; lpixel[ii] = (long) infpixel[ii]; inc[ii] = -ininc[ii]; } /* calc number of tiles in each dimension, and tile containing */ /* the first and last pixel we want to read in each dimension */ naxis[ii] = (fptr->Fptr)->znaxis[ii]; if (fpixel[ii] < 1) { if (nullcheck == 2) { free(bnullarray); } free(buffer); return(*status = BAD_PIX_NUM); } tilesize[ii] = (fptr->Fptr)->tilesize[ii]; tiledim[ii] = (naxis[ii] - 1) / tilesize[ii] + 1; ftile[ii] = (fpixel[ii] - 1) / tilesize[ii] + 1; ltile[ii] = minvalue((lpixel[ii] - 1) / tilesize[ii] + 1, tiledim[ii]); rowdim[ii] = ntemp; /* total tiles in each dimension */ ntemp *= tiledim[ii]; } if (anynul) *anynul = 0; /* initialize */ /* support up to 6 dimensions for now */ /* tfpixel and tlpixel are the first and last image pixels */ /* along each dimension of the compression tile */ for (i5 = ftile[5]; i5 <= ltile[5]; i5++) { tfpixel[5] = (i5 - 1) * tilesize[5] + 1; tlpixel[5] = minvalue(tfpixel[5] + tilesize[5] - 1, naxis[5]); thistilesize[5] = tlpixel[5] - tfpixel[5] + 1; offset[5] = (i5 - 1) * rowdim[5]; for (i4 = ftile[4]; i4 <= ltile[4]; i4++) { tfpixel[4] = (i4 - 1) * tilesize[4] + 1; tlpixel[4] = minvalue(tfpixel[4] + tilesize[4] - 1, naxis[4]); thistilesize[4] = thistilesize[5] * (tlpixel[4] - tfpixel[4] + 1); offset[4] = (i4 - 1) * rowdim[4] + offset[5]; for (i3 = ftile[3]; i3 <= ltile[3]; i3++) { tfpixel[3] = (i3 - 1) * tilesize[3] + 1; tlpixel[3] = minvalue(tfpixel[3] + tilesize[3] - 1, naxis[3]); thistilesize[3] = thistilesize[4] * (tlpixel[3] - tfpixel[3] + 1); offset[3] = (i3 - 1) * rowdim[3] + offset[4]; for (i2 = ftile[2]; i2 <= ltile[2]; i2++) { tfpixel[2] = (i2 - 1) * tilesize[2] + 1; tlpixel[2] = minvalue(tfpixel[2] + tilesize[2] - 1, naxis[2]); thistilesize[2] = thistilesize[3] * (tlpixel[2] - tfpixel[2] + 1); offset[2] = (i2 - 1) * rowdim[2] + offset[3]; for (i1 = ftile[1]; i1 <= ltile[1]; i1++) { tfpixel[1] = (i1 - 1) * tilesize[1] + 1; tlpixel[1] = minvalue(tfpixel[1] + tilesize[1] - 1, naxis[1]); thistilesize[1] = thistilesize[2] * (tlpixel[1] - tfpixel[1] + 1); offset[1] = (i1 - 1) * rowdim[1] + offset[2]; for (i0 = ftile[0]; i0 <= ltile[0]; i0++) { tfpixel[0] = (i0 - 1) * tilesize[0] + 1; tlpixel[0] = minvalue(tfpixel[0] + tilesize[0] - 1, naxis[0]); thistilesize[0] = thistilesize[1] * (tlpixel[0] - tfpixel[0] + 1); /* calculate row of table containing this tile */ irow = i0 + offset[1]; /* printf("row %d, %d %d, %d %d, %d %d; %d\n", irow, tfpixel[0],tlpixel[0],tfpixel[1],tlpixel[1],tfpixel[2],tlpixel[2], thistilesize[0]); */ /* test if there are any intersecting pixels in this tile and the output image */ if (imcomp_test_overlap(ndim, tfpixel, tlpixel, fpixel, lpixel, inc, status)) { /* read and uncompress this row (tile) of the table */ /* also do type conversion and undefined pixel substitution */ /* at this point */ imcomp_decompress_tile(fptr, irow, thistilesize[0], datatype, nullcheck, nullval, buffer, bnullarray, &tilenul, status); if (tilenul && anynul) *anynul = 1; /* there are null pixels */ /* printf(" pixlen=%d, ndim=%d, %d %d %d, %d %d %d, %d %d %d\n", pixlen, ndim, fpixel[0],lpixel[0],inc[0],fpixel[1],lpixel[1],inc[1], fpixel[2],lpixel[2],inc[2]); */ /* copy the intersecting pixels from this tile to the output */ imcomp_copy_overlap(buffer, pixlen, ndim, tfpixel, tlpixel, bnullarray, array, fpixel, lpixel, inc, nullcheck, nullarray, status); } } } } } } } if (nullcheck == 2) { free(bnullarray); } free(buffer); return(*status); } /*---------------------------------------------------------------------------*/ int fits_read_write_compressed_img(fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the array to be returned */ LONGLONG *infpixel, /* I - 'bottom left corner' of the subsection */ LONGLONG *inlpixel, /* I - 'top right corner' of the subsection */ long *ininc, /* I - increment to be applied in each dimension */ int nullcheck, /* I - 0 for no null checking */ /* 1: set undefined pixels = nullval */ void *nullval, /* I - value for undefined pixels */ int *anynul, /* O - set to 1 if any values are null; else 0 */ fitsfile *outfptr, /* I - FITS file pointer */ int *status) /* IO - error status */ /* This is similar to fits_read_compressed_img, except that it writes the pixels to the output image, on a tile by tile basis instead of returning the array. */ { long naxis[MAX_COMPRESS_DIM], tiledim[MAX_COMPRESS_DIM]; long tilesize[MAX_COMPRESS_DIM], thistilesize[MAX_COMPRESS_DIM]; long ftile[MAX_COMPRESS_DIM], ltile[MAX_COMPRESS_DIM]; long tfpixel[MAX_COMPRESS_DIM], tlpixel[MAX_COMPRESS_DIM]; long rowdim[MAX_COMPRESS_DIM], offset[MAX_COMPRESS_DIM],ntemp; long fpixel[MAX_COMPRESS_DIM], lpixel[MAX_COMPRESS_DIM]; long inc[MAX_COMPRESS_DIM]; long i5, i4, i3, i2, i1, i0, irow; int ii, ndim, pixlen, tilenul; void *buffer; char *bnullarray = 0, *cnull; LONGLONG firstelem; if (*status > 0) return(*status); if (!fits_is_compressed_image(fptr, status) ) { ffpmsg("CHDU is not a compressed image (fits_read_compressed_img)"); return(*status = DATA_DECOMPRESSION_ERR); } cnull = (char *) nullval; /* used to test if the nullval = 0 */ /* get temporary space for uncompressing one image tile */ /* If nullval == 0, then this means that the */ /* calling routine does not want to check for null pixels in the array */ if (datatype == TSHORT) { buffer = malloc ((fptr->Fptr)->maxtilelen * sizeof (short)); pixlen = sizeof(short); if (cnull) { if (cnull[0] == 0 && cnull[1] == 0 ) { nullcheck = 0; } } } else if (datatype == TINT) { buffer = malloc ((fptr->Fptr)->maxtilelen * sizeof (int)); pixlen = sizeof(int); if (cnull) { if (cnull[0] == 0 && cnull[1] == 0 && cnull[2] == 0 && cnull[3] == 0 ) { nullcheck = 0; } } } else if (datatype == TLONG) { buffer = malloc ((fptr->Fptr)->maxtilelen * sizeof (long)); pixlen = sizeof(long); if (cnull) { if (cnull[0] == 0 && cnull[1] == 0 && cnull[2] == 0 && cnull[3] == 0 ) { nullcheck = 0; } } } else if (datatype == TFLOAT) { buffer = malloc ((fptr->Fptr)->maxtilelen * sizeof (float)); pixlen = sizeof(float); if (cnull) { if (cnull[0] == 0 && cnull[1] == 0 && cnull[2] == 0 && cnull[3] == 0 ) { nullcheck = 0; } } } else if (datatype == TDOUBLE) { buffer = malloc ((fptr->Fptr)->maxtilelen * sizeof (double)); pixlen = sizeof(double); if (cnull) { if (cnull[0] == 0 && cnull[1] == 0 && cnull[2] == 0 && cnull[3] == 0 && cnull[4] == 0 && cnull[5] == 0 && cnull[6] == 0 && cnull[7] == 0 ) { nullcheck = 0; } } } else if (datatype == TUSHORT) { buffer = malloc ((fptr->Fptr)->maxtilelen * sizeof (unsigned short)); pixlen = sizeof(short); if (cnull) { if (cnull[0] == 0 && cnull[1] == 0 ){ nullcheck = 0; } } } else if (datatype == TUINT) { buffer = malloc ((fptr->Fptr)->maxtilelen * sizeof (unsigned int)); pixlen = sizeof(int); if (cnull) { if (cnull[0] == 0 && cnull[1] == 0 && cnull[2] == 0 && cnull[3] == 0 ){ nullcheck = 0; } } } else if (datatype == TULONG) { buffer = malloc ((fptr->Fptr)->maxtilelen * sizeof (unsigned long)); pixlen = sizeof(long); if (cnull) { if (cnull[0] == 0 && cnull[1] == 0 && cnull[2] == 0 && cnull[3] == 0 ){ nullcheck = 0; } } } else if (datatype == TBYTE || datatype == TSBYTE) { buffer = malloc ((fptr->Fptr)->maxtilelen * sizeof (char)); pixlen = 1; if (cnull) { if (cnull[0] == 0){ nullcheck = 0; } } } else { ffpmsg("unsupported datatype for uncompressing image"); return(*status = BAD_DATATYPE); } if (buffer == NULL) { ffpmsg("Out of memory (fits_read_compress_img)"); return (*status = MEMORY_ALLOCATION); } /* initialize all the arrays */ for (ii = 0; ii < MAX_COMPRESS_DIM; ii++) { naxis[ii] = 1; tiledim[ii] = 1; tilesize[ii] = 1; ftile[ii] = 1; ltile[ii] = 1; rowdim[ii] = 1; } ndim = (fptr->Fptr)->zndim; ntemp = 1; for (ii = 0; ii < ndim; ii++) { /* support for mirror-reversed image sections */ if (infpixel[ii] <= inlpixel[ii]) { fpixel[ii] = (long) infpixel[ii]; lpixel[ii] = (long) inlpixel[ii]; inc[ii] = ininc[ii]; } else { fpixel[ii] = (long) inlpixel[ii]; lpixel[ii] = (long) infpixel[ii]; inc[ii] = -ininc[ii]; } /* calc number of tiles in each dimension, and tile containing */ /* the first and last pixel we want to read in each dimension */ naxis[ii] = (fptr->Fptr)->znaxis[ii]; if (fpixel[ii] < 1) { free(buffer); return(*status = BAD_PIX_NUM); } tilesize[ii] = (fptr->Fptr)->tilesize[ii]; tiledim[ii] = (naxis[ii] - 1) / tilesize[ii] + 1; ftile[ii] = (fpixel[ii] - 1) / tilesize[ii] + 1; ltile[ii] = minvalue((lpixel[ii] - 1) / tilesize[ii] + 1, tiledim[ii]); rowdim[ii] = ntemp; /* total tiles in each dimension */ ntemp *= tiledim[ii]; } if (anynul) *anynul = 0; /* initialize */ firstelem = 1; /* support up to 6 dimensions for now */ /* tfpixel and tlpixel are the first and last image pixels */ /* along each dimension of the compression tile */ for (i5 = ftile[5]; i5 <= ltile[5]; i5++) { tfpixel[5] = (i5 - 1) * tilesize[5] + 1; tlpixel[5] = minvalue(tfpixel[5] + tilesize[5] - 1, naxis[5]); thistilesize[5] = tlpixel[5] - tfpixel[5] + 1; offset[5] = (i5 - 1) * rowdim[5]; for (i4 = ftile[4]; i4 <= ltile[4]; i4++) { tfpixel[4] = (i4 - 1) * tilesize[4] + 1; tlpixel[4] = minvalue(tfpixel[4] + tilesize[4] - 1, naxis[4]); thistilesize[4] = thistilesize[5] * (tlpixel[4] - tfpixel[4] + 1); offset[4] = (i4 - 1) * rowdim[4] + offset[5]; for (i3 = ftile[3]; i3 <= ltile[3]; i3++) { tfpixel[3] = (i3 - 1) * tilesize[3] + 1; tlpixel[3] = minvalue(tfpixel[3] + tilesize[3] - 1, naxis[3]); thistilesize[3] = thistilesize[4] * (tlpixel[3] - tfpixel[3] + 1); offset[3] = (i3 - 1) * rowdim[3] + offset[4]; for (i2 = ftile[2]; i2 <= ltile[2]; i2++) { tfpixel[2] = (i2 - 1) * tilesize[2] + 1; tlpixel[2] = minvalue(tfpixel[2] + tilesize[2] - 1, naxis[2]); thistilesize[2] = thistilesize[3] * (tlpixel[2] - tfpixel[2] + 1); offset[2] = (i2 - 1) * rowdim[2] + offset[3]; for (i1 = ftile[1]; i1 <= ltile[1]; i1++) { tfpixel[1] = (i1 - 1) * tilesize[1] + 1; tlpixel[1] = minvalue(tfpixel[1] + tilesize[1] - 1, naxis[1]); thistilesize[1] = thistilesize[2] * (tlpixel[1] - tfpixel[1] + 1); offset[1] = (i1 - 1) * rowdim[1] + offset[2]; for (i0 = ftile[0]; i0 <= ltile[0]; i0++) { tfpixel[0] = (i0 - 1) * tilesize[0] + 1; tlpixel[0] = minvalue(tfpixel[0] + tilesize[0] - 1, naxis[0]); thistilesize[0] = thistilesize[1] * (tlpixel[0] - tfpixel[0] + 1); /* calculate row of table containing this tile */ irow = i0 + offset[1]; /* read and uncompress this row (tile) of the table */ /* also do type conversion and undefined pixel substitution */ /* at this point */ imcomp_decompress_tile(fptr, irow, thistilesize[0], datatype, nullcheck, nullval, buffer, bnullarray, &tilenul, status); /* write the image to the output file */ if (tilenul && anynul) { /* this assumes that the tiled pixels are in the same order as in the uncompressed FITS image. This is not necessarily the case, but it almost alway is in practice. Note that null checking is not performed for integer images, so this could only be a problem for tile compressed floating point images that use an unconventional tiling pattern. */ fits_write_imgnull(outfptr, datatype, firstelem, thistilesize[0], buffer, nullval, status); } else { fits_write_subset(outfptr, datatype, tfpixel, tlpixel, buffer, status); } firstelem += thistilesize[0]; } } } } } } free(buffer); return(*status); } /*--------------------------------------------------------------------------*/ int fits_read_compressed_pixels(fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the array to be returned */ LONGLONG fpixel, /* I - 'first pixel to read */ LONGLONG npixel, /* I - number of pixels to read */ int nullcheck, /* I - 0 for no null checking */ /* 1: set undefined pixels = nullval */ /* 2: set nullarray=1 for undefined pixels */ void *nullval, /* I - value for undefined pixels */ void *array, /* O - array of values that are returned */ char *nullarray, /* O - array of flags = 1 if nullcheck = 2 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read a consecutive set of pixels from a compressed image. This routine interpretes the n-dimensional image as a long one-dimensional array. This is actually a rather inconvenient way to read compressed images in general, and could be rather inefficient if the requested pixels to be read are located in many different image compression tiles. The general strategy used here is to read the requested pixels in blocks that correspond to rectangular image sections. */ { int naxis, ii, bytesperpixel, planenul; long naxes[MAX_COMPRESS_DIM], nread; long nplane, inc[MAX_COMPRESS_DIM]; LONGLONG tfirst, tlast, last0, last1, dimsize[MAX_COMPRESS_DIM]; LONGLONG firstcoord[MAX_COMPRESS_DIM], lastcoord[MAX_COMPRESS_DIM]; char *arrayptr, *nullarrayptr; if (*status > 0) return(*status); arrayptr = (char *) array; nullarrayptr = nullarray; /* get size of array pixels, in bytes */ bytesperpixel = ffpxsz(datatype); for (ii = 0; ii < MAX_COMPRESS_DIM; ii++) { naxes[ii] = 1; firstcoord[ii] = 0; lastcoord[ii] = 0; inc[ii] = 1; } /* determine the dimensions of the image to be read */ ffgidm(fptr, &naxis, status); ffgisz(fptr, MAX_COMPRESS_DIM, naxes, status); /* calc the cumulative number of pixels in each successive dimension */ dimsize[0] = 1; for (ii = 1; ii < MAX_COMPRESS_DIM; ii++) dimsize[ii] = dimsize[ii - 1] * naxes[ii - 1]; /* determine the coordinate of the first and last pixel in the image */ /* Use zero based indexes here */ tfirst = fpixel - 1; tlast = tfirst + npixel - 1; for (ii = naxis - 1; ii >= 0; ii--) { firstcoord[ii] = tfirst / dimsize[ii]; lastcoord[ii] = tlast / dimsize[ii]; tfirst = tfirst - firstcoord[ii] * dimsize[ii]; tlast = tlast - lastcoord[ii] * dimsize[ii]; } /* to simplify things, treat 1-D, 2-D, and 3-D images as separate cases */ if (naxis == 1) { /* Simple: just read the requested range of pixels */ firstcoord[0] = firstcoord[0] + 1; lastcoord[0] = lastcoord[0] + 1; fits_read_compressed_img(fptr, datatype, firstcoord, lastcoord, inc, nullcheck, nullval, array, nullarray, anynul, status); return(*status); } else if (naxis == 2) { nplane = 0; /* read 1st (and only) plane of the image */ fits_read_compressed_img_plane(fptr, datatype, bytesperpixel, nplane, firstcoord, lastcoord, inc, naxes, nullcheck, nullval, array, nullarray, anynul, &nread, status); } else if (naxis == 3) { /* test for special case: reading an integral number of planes */ if (firstcoord[0] == 0 && firstcoord[1] == 0 && lastcoord[0] == naxes[0] - 1 && lastcoord[1] == naxes[1] - 1) { for (ii = 0; ii < MAX_COMPRESS_DIM; ii++) { /* convert from zero base to 1 base */ (firstcoord[ii])++; (lastcoord[ii])++; } /* we can read the contiguous block of pixels in one go */ fits_read_compressed_img(fptr, datatype, firstcoord, lastcoord, inc, nullcheck, nullval, array, nullarray, anynul, status); return(*status); } if (anynul) *anynul = 0; /* initialize */ /* save last coordinate in temporary variables */ last0 = lastcoord[0]; last1 = lastcoord[1]; if (firstcoord[2] < lastcoord[2]) { /* we will read up to the last pixel in all but the last plane */ lastcoord[0] = naxes[0] - 1; lastcoord[1] = naxes[1] - 1; } /* read one plane of the cube at a time, for simplicity */ for (nplane = (long) firstcoord[2]; nplane <= lastcoord[2]; nplane++) { if (nplane == lastcoord[2]) { lastcoord[0] = last0; lastcoord[1] = last1; } fits_read_compressed_img_plane(fptr, datatype, bytesperpixel, nplane, firstcoord, lastcoord, inc, naxes, nullcheck, nullval, arrayptr, nullarrayptr, &planenul, &nread, status); if (planenul && anynul) *anynul = 1; /* there are null pixels */ /* for all subsequent planes, we start with the first pixel */ firstcoord[0] = 0; firstcoord[1] = 0; /* increment pointers to next elements to be read */ arrayptr = arrayptr + nread * bytesperpixel; if (nullarrayptr && (nullcheck == 2) ) nullarrayptr = nullarrayptr + nread; } } else { ffpmsg("only 1D, 2D, or 3D images are currently supported"); return(*status = DATA_DECOMPRESSION_ERR); } return(*status); } /*--------------------------------------------------------------------------*/ int fits_read_compressed_img_plane(fitsfile *fptr, /* I - FITS file */ int datatype, /* I - datatype of the array to be returned */ int bytesperpixel, /* I - number of bytes per pixel in array */ long nplane, /* I - which plane of the cube to read */ LONGLONG *firstcoord, /* coordinate of first pixel to read */ LONGLONG *lastcoord, /* coordinate of last pixel to read */ long *inc, /* increment of pixels to read */ long *naxes, /* size of each image dimension */ int nullcheck, /* I - 0 for no null checking */ /* 1: set undefined pixels = nullval */ /* 2: set nullarray=1 for undefined pixels */ void *nullval, /* I - value for undefined pixels */ void *array, /* O - array of values that are returned */ char *nullarray, /* O - array of flags = 1 if nullcheck = 2 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ long *nread, /* O - total number of pixels read and returned*/ int *status) /* IO - error status */ /* in general we have to read the first partial row of the image, followed by the middle complete rows, followed by the last partial row of the image. If the first or last rows are complete, then read them at the same time as all the middle rows. */ { /* bottom left coord. and top right coord. */ LONGLONG blc[MAX_COMPRESS_DIM], trc[MAX_COMPRESS_DIM]; char *arrayptr, *nullarrayptr; int tnull; if (anynul) *anynul = 0; *nread = 0; arrayptr = (char *) array; nullarrayptr = nullarray; blc[2] = nplane + 1; trc[2] = nplane + 1; if (firstcoord[0] != 0) { /* have to read a partial first row */ blc[0] = firstcoord[0] + 1; blc[1] = firstcoord[1] + 1; trc[1] = blc[1]; if (lastcoord[1] == firstcoord[1]) trc[0] = lastcoord[0] + 1; /* 1st and last pixels in same row */ else trc[0] = naxes[0]; /* read entire rest of the row */ fits_read_compressed_img(fptr, datatype, blc, trc, inc, nullcheck, nullval, arrayptr, nullarrayptr, &tnull, status); *nread = *nread + (long) (trc[0] - blc[0] + 1); if (tnull && anynul) *anynul = 1; /* there are null pixels */ if (lastcoord[1] == firstcoord[1]) { return(*status); /* finished */ } /* set starting coord to beginning of next line */ firstcoord[0] = 0; firstcoord[1] += 1; arrayptr = arrayptr + (trc[0] - blc[0] + 1) * bytesperpixel; if (nullarrayptr && (nullcheck == 2) ) nullarrayptr = nullarrayptr + (trc[0] - blc[0] + 1); } /* read contiguous complete rows of the image, if any */ blc[0] = 1; blc[1] = firstcoord[1] + 1; trc[0] = naxes[0]; if (lastcoord[0] + 1 == naxes[0]) { /* can read the last complete row, too */ trc[1] = lastcoord[1] + 1; } else { /* last row is incomplete; have to read it separately */ trc[1] = lastcoord[1]; } if (trc[1] >= blc[1]) /* must have at least one whole line to read */ { fits_read_compressed_img(fptr, datatype, blc, trc, inc, nullcheck, nullval, arrayptr, nullarrayptr, &tnull, status); *nread = *nread + (long) ((trc[1] - blc[1] + 1) * naxes[0]); if (tnull && anynul) *anynul = 1; if (lastcoord[1] + 1 == trc[1]) return(*status); /* finished */ /* increment pointers for the last partial row */ arrayptr = arrayptr + (trc[1] - blc[1] + 1) * naxes[0] * bytesperpixel; if (nullarrayptr && (nullcheck == 2) ) nullarrayptr = nullarrayptr + (trc[1] - blc[1] + 1) * naxes[0]; } if (trc[1] == lastcoord[1] + 1) return(*status); /* all done */ /* set starting and ending coord to last line */ trc[0] = lastcoord[0] + 1; trc[1] = lastcoord[1] + 1; blc[1] = trc[1]; fits_read_compressed_img(fptr, datatype, blc, trc, inc, nullcheck, nullval, arrayptr, nullarrayptr, &tnull, status); if (tnull && anynul) *anynul = 1; *nread = *nread + (long) (trc[0] - blc[0] + 1); return(*status); } /*--------------------------------------------------------------------------*/ int imcomp_get_compressed_image_par(fitsfile *infptr, int *status) /* This routine reads keywords from a BINTABLE extension containing a compressed image. */ { char keyword[FLEN_KEYWORD]; char value[FLEN_VALUE]; int ii, tstatus, doffset; long expect_nrows, maxtilelen; if (*status > 0) return(*status); /* Copy relevant header keyword values to structure */ if (ffgky (infptr, TSTRING, "ZCMPTYPE", value, NULL, status) > 0) { ffpmsg("required ZCMPTYPE compression keyword not found in"); ffpmsg(" imcomp_get_compressed_image_par"); return(*status); } (infptr->Fptr)->zcmptype[0] = '\0'; strncat((infptr->Fptr)->zcmptype, value, 11); if (!FSTRCMP(value, "RICE_1") || !FSTRCMP(value, "RICE_ONE") ) (infptr->Fptr)->compress_type = RICE_1; else if (!FSTRCMP(value, "HCOMPRESS_1") ) (infptr->Fptr)->compress_type = HCOMPRESS_1; else if (!FSTRCMP(value, "GZIP_1") ) (infptr->Fptr)->compress_type = GZIP_1; else if (!FSTRCMP(value, "GZIP_2") ) (infptr->Fptr)->compress_type = GZIP_2; else if (!FSTRCMP(value, "BZIP2_1") ) (infptr->Fptr)->compress_type = BZIP2_1; else if (!FSTRCMP(value, "PLIO_1") ) (infptr->Fptr)->compress_type = PLIO_1; else if (!FSTRCMP(value, "NOCOMPRESS") ) (infptr->Fptr)->compress_type = NOCOMPRESS; else { ffpmsg("Unknown image compression type:"); ffpmsg(value); return (*status = DATA_DECOMPRESSION_ERR); } /* get the floating point to integer quantization type, if present. */ /* FITS files produced before 2009 will not have this keyword */ tstatus = 0; if (ffgky(infptr, TSTRING, "ZQUANTIZ", value, NULL, &tstatus) > 0) { (infptr->Fptr)->quantize_method = 0; } else { if (!FSTRCMP(value, "NONE") ) { (infptr->Fptr)->quantize_level = NO_QUANTIZE; } else if (!FSTRCMP(value, "SUBTRACTIVE_DITHER_1") ) (infptr->Fptr)->quantize_method = SUBTRACTIVE_DITHER_1; else if (!FSTRCMP(value, "SUBTRACTIVE_DITHER_2") ) (infptr->Fptr)->quantize_method = SUBTRACTIVE_DITHER_2; else if (!FSTRCMP(value, "NO_DITHER") ) (infptr->Fptr)->quantize_method = NO_DITHER; else (infptr->Fptr)->quantize_method = 0; } /* get the floating point quantization dithering offset, if present. */ /* FITS files produced before October 2009 will not have this keyword */ tstatus = 0; if (ffgky(infptr, TINT, "ZDITHER0", &doffset, NULL, &tstatus) > 0) { /* by default start with 1st element of random sequence */ (infptr->Fptr)->dither_seed = 1; } else { (infptr->Fptr)->dither_seed = doffset; } if (ffgky (infptr, TINT, "ZBITPIX", &(infptr->Fptr)->zbitpix, NULL, status) > 0) { ffpmsg("required ZBITPIX compression keyword not found"); return(*status); } if (ffgky (infptr,TINT, "ZNAXIS", &(infptr->Fptr)->zndim, NULL, status) > 0) { ffpmsg("required ZNAXIS compression keyword not found"); return(*status); } if ((infptr->Fptr)->zndim < 1) { ffpmsg("Compressed image has no data (ZNAXIS < 1)"); return (*status = BAD_NAXIS); } if ((infptr->Fptr)->zndim > MAX_COMPRESS_DIM) { ffpmsg("Compressed image has too many dimensions"); return(*status = BAD_NAXIS); } expect_nrows = 1; maxtilelen = 1; for (ii = 0; ii < (infptr->Fptr)->zndim; ii++) { /* get image size */ sprintf (keyword, "ZNAXIS%d", ii+1); ffgky (infptr, TLONG,keyword, &(infptr->Fptr)->znaxis[ii],NULL,status); if (*status > 0) { ffpmsg("required ZNAXISn compression keyword not found"); return(*status); } /* get compression tile size */ sprintf (keyword, "ZTILE%d", ii+1); /* set default tile size in case keywords are not present */ if (ii == 0) (infptr->Fptr)->tilesize[0] = (infptr->Fptr)->znaxis[0]; else (infptr->Fptr)->tilesize[ii] = 1; tstatus = 0; ffgky (infptr, TLONG, keyword, &(infptr->Fptr)->tilesize[ii], NULL, &tstatus); expect_nrows *= (((infptr->Fptr)->znaxis[ii] - 1) / (infptr->Fptr)->tilesize[ii]+ 1); maxtilelen *= (infptr->Fptr)->tilesize[ii]; } /* check number of rows */ if (expect_nrows != (infptr->Fptr)->numrows) { ffpmsg( "number of table rows != the number of tiles in compressed image"); return (*status = DATA_DECOMPRESSION_ERR); } /* read any algorithm specific parameters */ if ((infptr->Fptr)->compress_type == RICE_1 ) { if (ffgky(infptr, TINT,"ZVAL1", &(infptr->Fptr)->rice_blocksize, NULL, status) > 0) { ffpmsg("required ZVAL1 compression keyword not found"); return(*status); } tstatus = 0; if (ffgky(infptr, TINT,"ZVAL2", &(infptr->Fptr)->rice_bytepix, NULL, &tstatus) > 0) { (infptr->Fptr)->rice_bytepix = 4; /* default value */ } if ((infptr->Fptr)->rice_blocksize < 16 && (infptr->Fptr)->rice_bytepix > 8) { /* values are reversed */ tstatus = (infptr->Fptr)->rice_bytepix; (infptr->Fptr)->rice_bytepix = (infptr->Fptr)->rice_blocksize; (infptr->Fptr)->rice_blocksize = tstatus; } } else if ((infptr->Fptr)->compress_type == HCOMPRESS_1 ) { if (ffgky(infptr, TFLOAT,"ZVAL1", &(infptr->Fptr)->hcomp_scale, NULL, status) > 0) { ffpmsg("required ZVAL1 compression keyword not found"); return(*status); } tstatus = 0; ffgky(infptr, TINT,"ZVAL2", &(infptr->Fptr)->hcomp_smooth, NULL, &tstatus); } /* store number of pixels in each compression tile, */ /* and max size of the compressed tile buffer */ (infptr->Fptr)->maxtilelen = maxtilelen; (infptr->Fptr)->maxelem = imcomp_calc_max_elem ((infptr->Fptr)->compress_type, maxtilelen, (infptr->Fptr)->zbitpix, (infptr->Fptr)->rice_blocksize); /* Get Column numbers. */ if (ffgcno(infptr, CASEINSEN, "COMPRESSED_DATA", &(infptr->Fptr)->cn_compressed, status) > 0) { ffpmsg("couldn't find COMPRESSED_DATA column (fits_get_compressed_img_par)"); return(*status = DATA_DECOMPRESSION_ERR); } ffpmrk(); /* put mark on message stack; erase any messages after this */ tstatus = 0; ffgcno(infptr,CASEINSEN, "UNCOMPRESSED_DATA", &(infptr->Fptr)->cn_uncompressed, &tstatus); tstatus = 0; ffgcno(infptr,CASEINSEN, "GZIP_COMPRESSED_DATA", &(infptr->Fptr)->cn_gzip_data, &tstatus); tstatus = 0; if (ffgcno(infptr, CASEINSEN, "ZSCALE", &(infptr->Fptr)->cn_zscale, &tstatus) > 0) { /* CMPSCALE column doesn't exist; see if there is a keyword */ tstatus = 0; if (ffgky(infptr, TDOUBLE, "ZSCALE", &(infptr->Fptr)->zscale, NULL, &tstatus) <= 0) (infptr->Fptr)->cn_zscale = -1; /* flag for a constant ZSCALE */ } tstatus = 0; if (ffgcno(infptr, CASEINSEN, "ZZERO", &(infptr->Fptr)->cn_zzero, &tstatus) > 0) { /* CMPZERO column doesn't exist; see if there is a keyword */ tstatus = 0; if (ffgky(infptr, TDOUBLE, "ZZERO", &(infptr->Fptr)->zzero, NULL, &tstatus) <= 0) (infptr->Fptr)->cn_zzero = -1; /* flag for a constant ZZERO */ } tstatus = 0; if (ffgcno(infptr, CASEINSEN, "ZBLANK", &(infptr->Fptr)->cn_zblank, &tstatus) > 0) { /* ZBLANK column doesn't exist; see if there is a keyword */ tstatus = 0; if (ffgky(infptr, TINT, "ZBLANK", &(infptr->Fptr)->zblank, NULL, &tstatus) <= 0) { (infptr->Fptr)->cn_zblank = -1; /* flag for a constant ZBLANK */ } else { /* ZBLANK keyword doesn't exist; see if there is a BLANK keyword */ tstatus = 0; if (ffgky(infptr, TINT, "BLANK", &(infptr->Fptr)->zblank, NULL, &tstatus) <= 0) (infptr->Fptr)->cn_zblank = -1; /* flag for a constant ZBLANK */ } } /* read the conventional BSCALE and BZERO scaling keywords, if present */ tstatus = 0; if (ffgky (infptr, TDOUBLE, "BSCALE", &(infptr->Fptr)->cn_bscale, NULL, &tstatus) > 0) { (infptr->Fptr)->cn_bscale = 1.0; } tstatus = 0; if (ffgky (infptr, TDOUBLE, "BZERO", &(infptr->Fptr)->cn_bzero, NULL, &tstatus) > 0) { (infptr->Fptr)->cn_bzero = 0.0; (infptr->Fptr)->cn_actual_bzero = 0.0; } else { (infptr->Fptr)->cn_actual_bzero = (infptr->Fptr)->cn_bzero; } /* special case: the quantization level is not given by a keyword in */ /* the HDU header, so we have to explicitly copy the requested value */ /* to the actual value */ if ( (infptr->Fptr)->request_quantize_level != 0.) (infptr->Fptr)->quantize_level = (infptr->Fptr)->request_quantize_level; ffcmrk(); /* clear any spurious error messages, back to the mark */ return (*status); } /*--------------------------------------------------------------------------*/ int imcomp_copy_imheader(fitsfile *infptr, fitsfile *outfptr, int *status) /* This routine reads the header keywords from the input image and copies them to the output image; the manditory structural keywords and the checksum keywords are not copied. If the DATE keyword is copied, then it is updated with the current date and time. */ { int nkeys, ii, keyclass; char card[FLEN_CARD]; /* a header record */ if (*status > 0) return(*status); ffghsp(infptr, &nkeys, NULL, status); /* get number of keywords in image */ for (ii = 5; ii <= nkeys; ii++) /* skip the first 4 keywords */ { ffgrec(infptr, ii, card, status); keyclass = ffgkcl(card); /* Get the type/class of keyword */ /* don't copy structural keywords or checksum keywords */ if ((keyclass <= TYP_CMPRS_KEY) || (keyclass == TYP_CKSUM_KEY)) continue; if (FSTRNCMP(card, "DATE ", 5) == 0) /* write current date */ { ffpdat(outfptr, status); } else if (FSTRNCMP(card, "EXTNAME ", 8) == 0) { /* don't copy default EXTNAME keyword from a compressed image */ if (FSTRNCMP(card, "EXTNAME = 'COMPRESSED_IMAGE'", 28)) { /* if EXTNAME keyword already exists, overwrite it */ /* otherwise append a new EXTNAME keyword */ ffucrd(outfptr, "EXTNAME", card, status); } } else { /* just copy the keyword to the output header */ ffprec (outfptr, card, status); } if (*status > 0) return (*status); } return (*status); } /*--------------------------------------------------------------------------*/ int imcomp_copy_img2comp(fitsfile *infptr, fitsfile *outfptr, int *status) /* This routine copies the header keywords from the uncompressed input image and to the compressed image (in a binary table) */ { char card[FLEN_CARD], card2[FLEN_CARD]; /* a header record */ int nkeys, nmore, ii, jj, tstatus, bitpix; /* tile compressed image keyword translation table */ /* INPUT OUTPUT */ /* 01234567 01234567 */ char *patterns[][2] = {{"SIMPLE", "ZSIMPLE" }, {"XTENSION", "ZTENSION" }, {"BITPIX", "ZBITPIX" }, {"NAXIS", "ZNAXIS" }, {"NAXISm", "ZNAXISm" }, {"EXTEND", "ZEXTEND" }, {"BLOCKED", "ZBLOCKED"}, {"PCOUNT", "ZPCOUNT" }, {"GCOUNT", "ZGCOUNT" }, {"CHECKSUM","ZHECKSUM"}, /* save original checksums */ {"DATASUM", "ZDATASUM"}, {"*", "+" }}; /* copy all other keywords */ int npat; if (*status > 0) return(*status); /* write a default EXTNAME keyword if it doesn't exist in input file*/ fits_read_card(infptr, "EXTNAME", card, status); if (*status) { *status = 0; strcpy(card, "EXTNAME = 'COMPRESSED_IMAGE'"); fits_write_record(outfptr, card, status); } /* copy all the keywords from the input file to the output */ npat = sizeof(patterns)/sizeof(patterns[0][0])/2; fits_translate_keywords(infptr, outfptr, 1, patterns, npat, 0, 0, 0, status); if ( (outfptr->Fptr)->request_lossy_int_compress != 0) { /* request was made to compress integer images as if they had float pixels. */ /* If input image has positive bitpix value, then reset the output ZBITPIX */ /* value to -32. */ fits_read_key(infptr, TINT, "BITPIX", &bitpix, NULL, status); if (*status <= 0 && bitpix > 0) { fits_modify_key_lng(outfptr, "ZBITPIX", -32, NULL, status); /* also delete the BSCALE, BZERO, and BLANK keywords */ tstatus = 0; fits_delete_key(outfptr, "BSCALE", &tstatus); tstatus = 0; fits_delete_key(outfptr, "BZERO", &tstatus); tstatus = 0; fits_delete_key(outfptr, "BLANK", &tstatus); } } /* For compatibility with software that uses an older version of CFITSIO, we must make certain that the new ZQUANTIZ keyword, if it exists, must occur after the other peudo-required keywords (e.g., ZSIMPLE, ZBITPIX, etc.). Do this by trying to delete the keyword. If that succeeds (and thus the keyword did exist) then rewrite the keyword at the end of header. In principle this should not be necessary once all software has upgraded to a newer version of CFITSIO (version number greater than 3.181, newer than August 2009). Do the same for the new ZDITHER0 keyword. */ tstatus = 0; if (fits_read_card(outfptr, "ZQUANTIZ", card, &tstatus) == 0) { fits_delete_key(outfptr, "ZQUANTIZ", status); /* rewrite the deleted keyword at the end of the header */ fits_write_record(outfptr, card, status); /* write some associated HISTORY keywords */ fits_parse_value(card, card2, NULL, status); if (strncasecmp(card2, "'NONE", 5) ) { /* the value is not 'NONE' */ fits_write_history(outfptr, "Image was compressed by CFITSIO using scaled integer quantization:", status); sprintf(card2, " q = %f / quantized level scaling parameter", (outfptr->Fptr)->request_quantize_level); fits_write_history(outfptr, card2, status); fits_write_history(outfptr, card+10, status); } } tstatus = 0; if (fits_read_card(outfptr, "ZDITHER0", card, &tstatus) == 0) { fits_delete_key(outfptr, "ZDITHER0", status); /* rewrite the deleted keyword at the end of the header */ fits_write_record(outfptr, card, status); } ffghsp(infptr, &nkeys, &nmore, status); /* get number of keywords in image */ nmore = nmore / 36; /* how many completely empty header blocks are there? */ /* preserve the same number of spare header blocks in the output header */ for (jj = 0; jj < nmore; jj++) for (ii = 0; ii < 36; ii++) fits_write_record(outfptr, " ", status); return (*status); } /*--------------------------------------------------------------------------*/ int imcomp_copy_comp2img(fitsfile *infptr, fitsfile *outfptr, int norec, int *status) /* This routine copies the header keywords from the compressed input image and to the uncompressed image (in a binary table) */ { char card[FLEN_CARD]; /* a header record */ char *patterns[40][2]; char negative[] = "-"; int ii,jj, npat, nreq, nsp, tstatus = 0; int nkeys, nmore; /* tile compressed image keyword translation table */ /* INPUT OUTPUT */ /* 01234567 01234567 */ /* only translate these if required keywords not already written */ char *reqkeys[][2] = { {"ZSIMPLE", "SIMPLE" }, {"ZTENSION", "XTENSION"}, {"ZBITPIX", "BITPIX" }, {"ZNAXIS", "NAXIS" }, {"ZNAXISm", "NAXISm" }, {"ZEXTEND", "EXTEND" }, {"ZBLOCKED", "BLOCKED"}, {"ZPCOUNT", "PCOUNT" }, {"ZGCOUNT", "GCOUNT" }, {"ZHECKSUM", "CHECKSUM"}, /* restore original checksums */ {"ZDATASUM", "DATASUM"}}; /* other special keywords */ char *spkeys[][2] = { {"XTENSION", "-" }, {"BITPIX", "-" }, {"NAXIS", "-" }, {"NAXISm", "-" }, {"PCOUNT", "-" }, {"GCOUNT", "-" }, {"TFIELDS", "-" }, {"TTYPEm", "-" }, {"TFORMm", "-" }, {"ZIMAGE", "-" }, {"ZQUANTIZ", "-" }, {"ZDITHER0", "-" }, {"ZTILEm", "-" }, {"ZCMPTYPE", "-" }, {"ZBLANK", "-" }, {"ZNAMEm", "-" }, {"ZVALm", "-" }, {"CHECKSUM","-" }, /* delete checksums */ {"DATASUM", "-" }, {"EXTNAME", "+" }, /* we may change this, below */ {"*", "+" }}; if (*status > 0) return(*status); nreq = sizeof(reqkeys)/sizeof(reqkeys[0][0])/2; nsp = sizeof(spkeys)/sizeof(spkeys[0][0])/2; /* construct translation patterns */ for (ii = 0; ii < nreq; ii++) { patterns[ii][0] = reqkeys[ii][0]; if (norec) patterns[ii][1] = negative; else patterns[ii][1] = reqkeys[ii][1]; } for (ii = 0; ii < nsp; ii++) { patterns[ii+nreq][0] = spkeys[ii][0]; patterns[ii+nreq][1] = spkeys[ii][1]; } npat = nreq + nsp; /* see if the EXTNAME keyword should be copied or not */ fits_read_card(infptr, "EXTNAME", card, &tstatus); if (tstatus == 0) { if (!strncmp(card, "EXTNAME = 'COMPRESSED_IMAGE'", 28)) patterns[npat-2][1] = negative; } /* translate and copy the keywords from the input file to the output */ fits_translate_keywords(infptr, outfptr, 1, patterns, npat, 0, 0, 0, status); ffghsp(infptr, &nkeys, &nmore, status); /* get number of keywords in image */ nmore = nmore / 36; /* how many completely empty header blocks are there? */ /* preserve the same number of spare header blocks in the output header */ for (jj = 0; jj < nmore; jj++) for (ii = 0; ii < 36; ii++) fits_write_record(outfptr, " ", status); return (*status); } /*--------------------------------------------------------------------------*/ int imcomp_copy_prime2img(fitsfile *infptr, fitsfile *outfptr, int *status) /* This routine copies any unexpected keywords from the primary array of the compressed input image into the header of the uncompressed image (which is the primary array of the output file). */ { int nsp; /* keywords that will not be copied */ char *spkeys[][2] = { {"SIMPLE", "-" }, {"BITPIX", "-" }, {"NAXIS", "-" }, {"NAXISm", "-" }, {"PCOUNT", "-" }, {"EXTEND", "-" }, {"GCOUNT", "-" }, {"CHECKSUM","-" }, {"DATASUM", "-" }, {"EXTNAME", "-" }, {"HISTORY", "-" }, {"COMMENT", "-" }, {"*", "+" }}; if (*status > 0) return(*status); nsp = sizeof(spkeys)/sizeof(spkeys[0][0])/2; /* translate and copy the keywords from the input file to the output */ fits_translate_keywords(infptr, outfptr, 1, spkeys, nsp, 0, 0, 0, status); return (*status); } /*--------------------------------------------------------------------------*/ int imcomp_decompress_tile (fitsfile *infptr, int nrow, /* I - row of table to read and uncompress */ int tilelen, /* I - number of pixels in the tile */ int datatype, /* I - datatype to be returned in 'buffer' */ int nullcheck, /* I - 0 for no null checking */ void *nulval, /* I - value to be used for undefined pixels */ void *buffer, /* O - buffer for returned decompressed values */ char *bnullarray, /* O - buffer for returned null flags */ int *anynul, /* O - any null values returned? */ int *status) /* This routine decompresses one tile of the image */ { int *idata = 0; int tiledatatype, pixlen = 0; /* uncompressed integer data */ size_t idatalen, tilebytesize; int ii, tnull; /* value in the data which represents nulls */ unsigned char *cbuf; /* compressed data */ unsigned char charnull = 0; short snull = 0; int blocksize, ntilebins, tilecol = 0; float fnulval=0; float *tempfloat = 0; double dnulval=0; double bscale, bzero, actual_bzero, dummy = 0; /* scaling parameters */ long nelem = 0, offset = 0, tilesize; /* number of bytes */ int smooth, nx, ny, scale; /* hcompress parameters */ if (*status > 0) return(*status); /* **************************************************************** */ /* allocate pointers to array of cached uncompressed tiles, if not already done */ if ((infptr->Fptr)->tilerow == 0) { /* calculate number of column bins of compressed tile */ ntilebins = (((infptr->Fptr)->znaxis[0] - 1) / ((infptr->Fptr)->tilesize[0])) + 1; if ((infptr->Fptr)->znaxis[0] != (infptr->Fptr)->tilesize[0] || (infptr->Fptr)->tilesize[1] != 1 ) { /* don't cache the tile if only single row of the image */ (infptr->Fptr)->tilerow = (int *) calloc (ntilebins, sizeof(int)); (infptr->Fptr)->tiledata = (void**) calloc (ntilebins, sizeof(void*)); (infptr->Fptr)->tilenullarray = (void **) calloc (ntilebins, sizeof(char*)); (infptr->Fptr)->tiledatasize = (long *) calloc (ntilebins, sizeof(long)); (infptr->Fptr)->tiletype = (int *) calloc (ntilebins, sizeof(int)); (infptr->Fptr)->tileanynull = (int *) calloc (ntilebins, sizeof(int)); } } /* **************************************************************** */ /* check if this tile was cached; if so, just copy it out */ if ((infptr->Fptr)->tilerow) { /* calculate the column bin of the compressed tile */ tilecol = (nrow - 1) % ((long)(((infptr->Fptr)->znaxis[0] - 1) / ((infptr->Fptr)->tilesize[0])) + 1); if (nrow == (infptr->Fptr)->tilerow[tilecol] && datatype == (infptr->Fptr)->tiletype[tilecol] ) { memcpy(buffer, ((infptr->Fptr)->tiledata)[tilecol], (infptr->Fptr)->tiledatasize[tilecol]); if (nullcheck == 2) memcpy(bnullarray, (infptr->Fptr)->tilenullarray[tilecol], tilelen); *anynul = (infptr->Fptr)->tileanynull[tilecol]; return(*status); } } /* **************************************************************** */ /* get length of the compressed byte stream */ ffgdes (infptr, (infptr->Fptr)->cn_compressed, nrow, &nelem, &offset, status); /* EOF error here indicates that this tile has not yet been written */ if (*status == END_OF_FILE) return(*status = NO_COMPRESSED_TILE); /* **************************************************************** */ if (nelem == 0) /* special case: tile was not compressed normally */ { if ((infptr->Fptr)->cn_uncompressed >= 1 ) { /* This option of writing the uncompressed floating point data */ /* to the tile compressed file was used until about May 2011. */ /* This was replaced by the more efficient option of gzipping the */ /* floating point data before writing it to the tile-compressed file */ /* no compressed data, so simply read the uncompressed data */ /* directly from the UNCOMPRESSED_DATA column */ ffgdes (infptr, (infptr->Fptr)->cn_uncompressed, nrow, &nelem, &offset, status); if (nelem == 0 && offset == 0) /* this should never happen */ return (*status = NO_COMPRESSED_TILE); if (nullcheck <= 1) { /* set any null values in the array = nulval */ fits_read_col(infptr, datatype, (infptr->Fptr)->cn_uncompressed, nrow, 1, nelem, nulval, buffer, anynul, status); } else { /* set the bnullarray = 1 for any null values in the array */ fits_read_colnull(infptr, datatype, (infptr->Fptr)->cn_uncompressed, nrow, 1, nelem, buffer, bnullarray, anynul, status); } } else if ((infptr->Fptr)->cn_gzip_data >= 1) { /* This is the newer option, that was introduced in May 2011 */ /* floating point data was not quantized, so read the losslessly */ /* compressed data from the GZIP_COMPRESSED_DATA column */ ffgdes (infptr, (infptr->Fptr)->cn_gzip_data, nrow, &nelem, &offset, status); if (nelem == 0 && offset == 0) /* this should never happen */ return (*status = NO_COMPRESSED_TILE); /* allocate memory for the compressed tile of data */ cbuf = (unsigned char *) malloc (nelem); if (cbuf == NULL) { ffpmsg("error allocating memory for gzipped tile (imcomp_decompress_tile)"); return (*status = MEMORY_ALLOCATION); } /* read array of compressed bytes */ if (fits_read_col(infptr, TBYTE, (infptr->Fptr)->cn_gzip_data, nrow, 1, nelem, &charnull, cbuf, NULL, status) > 0) { ffpmsg("error reading compressed byte stream from binary table"); free (cbuf); return (*status); } /* size of the returned (uncompressed) data buffer, in bytes */ if ((infptr->Fptr)->zbitpix == FLOAT_IMG) { idatalen = tilelen * sizeof(float); } else if ((infptr->Fptr)->zbitpix == DOUBLE_IMG) { idatalen = tilelen * sizeof(double); } else { /* this should never happen! */ ffpmsg("incompatible data type in gzipped floating-point tile-compressed image"); free (cbuf); return (*status = DATA_DECOMPRESSION_ERR); } if (datatype == TDOUBLE && (infptr->Fptr)->zbitpix == FLOAT_IMG) { /* have to allocat a temporary buffer for the uncompressed data in the */ /* case where a gzipped "float" tile is returned as a "double" array */ tempfloat = (float*) malloc (idatalen); if (tempfloat == NULL) { ffpmsg("Memory allocation failure for tempfloat. (imcomp_decompress_tile)"); free (cbuf); return (*status = MEMORY_ALLOCATION); } /* uncompress the data into temp buffer */ if (uncompress2mem_from_mem ((char *)cbuf, nelem, (char **) &tempfloat, &idatalen, NULL, &tilebytesize, status)) { ffpmsg("failed to gunzip the image tile"); free (tempfloat); free (cbuf); return (*status); } } else { /* uncompress the data directly into the output buffer in all other cases */ if (uncompress2mem_from_mem ((char *)cbuf, nelem, (char **) &buffer, &idatalen, NULL, &tilebytesize, status)) { ffpmsg("failed to gunzip the image tile"); free (cbuf); return (*status); } } free(cbuf); /* do byte swapping and null value substitution for the tile of pixels */ if (tilebytesize == 4 * tilelen) { /* float pixels */ #if BYTESWAPPED if (tempfloat) ffswap4((int *) tempfloat, tilelen); else ffswap4((int *) buffer, tilelen); #endif if (datatype == TFLOAT) { if (nulval) { fnulval = *(float *) nulval; } fffr4r4((float *) buffer, (long) tilelen, 1., 0., nullcheck, fnulval, bnullarray, anynul, (float *) buffer, status); } else if (datatype == TDOUBLE) { if (nulval) { dnulval = *(double *) nulval; } /* note that the R*4 data are in the tempfloat array in this case */ fffr4r8((float *) tempfloat, (long) tilelen, 1., 0., nullcheck, dnulval, bnullarray, anynul, (double *) buffer, status); free(tempfloat); } else { ffpmsg("implicit data type conversion is not supported for gzipped image tiles"); return (*status = DATA_DECOMPRESSION_ERR); } } else if (tilebytesize == 8 * tilelen) { /* double pixels */ #if BYTESWAPPED ffswap8((double *) buffer, tilelen); #endif if (datatype == TFLOAT) { if (nulval) { fnulval = *(float *) nulval; } fffr8r4((double *) buffer, (long) tilelen, 1., 0., nullcheck, fnulval, bnullarray, anynul, (float *) buffer, status); } else if (datatype == TDOUBLE) { if (nulval) { dnulval = *(double *) nulval; } fffr8r8((double *) buffer, (long) tilelen, 1., 0., nullcheck, dnulval, bnullarray, anynul, (double *) buffer, status); } else { ffpmsg("implicit data type conversion is not supported in tile-compressed images"); return (*status = DATA_DECOMPRESSION_ERR); } } else { ffpmsg("error: uncompressed tile has wrong size"); return (*status = DATA_DECOMPRESSION_ERR); } /* end of special case of losslessly gzipping a floating-point image tile */ } else { /* this should never happen */ *status = NO_COMPRESSED_TILE; } return(*status); } /* **************************************************************** */ /* deal with the normal case of a compressed tile of pixels */ if (nullcheck == 2) { for (ii = 0; ii < tilelen; ii++) /* initialize the null flage array */ bnullarray[ii] = 0; } if (anynul) *anynul = 0; /* get linear scaling and offset values, if they exist */ actual_bzero = (infptr->Fptr)->cn_actual_bzero; if ((infptr->Fptr)->cn_zscale == 0) { /* set default scaling, if scaling is not defined */ bscale = 1.; bzero = 0.; } else if ((infptr->Fptr)->cn_zscale == -1) { bscale = (infptr->Fptr)->zscale; bzero = (infptr->Fptr)->zzero; } else { /* read the linear scale and offset values for this row */ ffgcvd (infptr, (infptr->Fptr)->cn_zscale, nrow, 1, 1, 0., &bscale, NULL, status); ffgcvd (infptr, (infptr->Fptr)->cn_zzero, nrow, 1, 1, 0., &bzero, NULL, status); if (*status > 0) { ffpmsg("error reading scaling factor and offset for compressed tile"); return (*status); } /* test if floating-point FITS image also has non-default BSCALE and */ /* BZERO keywords. If so, we have to combine the 2 linear scaling factors. */ if ( ((infptr->Fptr)->zbitpix == FLOAT_IMG || (infptr->Fptr)->zbitpix == DOUBLE_IMG ) && ((infptr->Fptr)->cn_bscale != 1.0 || (infptr->Fptr)->cn_bzero != 0.0 ) ) { bscale = bscale * (infptr->Fptr)->cn_bscale; bzero = bzero * (infptr->Fptr)->cn_bscale + (infptr->Fptr)->cn_bzero; } } if (bscale == 1.0 && bzero == 0.0 ) { /* if no other scaling has been specified, try using the values given by the BSCALE and BZERO keywords, if any */ bscale = (infptr->Fptr)->cn_bscale; bzero = (infptr->Fptr)->cn_bzero; } /* ************************************************************* */ /* get the value used to represent nulls in the int array */ if ((infptr->Fptr)->cn_zblank == 0) { nullcheck = 0; /* no null value; don't check for nulls */ } else if ((infptr->Fptr)->cn_zblank == -1) { tnull = (infptr->Fptr)->zblank; /* use the the ZBLANK keyword */ } else { /* read the null value for this row */ ffgcvk (infptr, (infptr->Fptr)->cn_zblank, nrow, 1, 1, 0, &tnull, NULL, status); if (*status > 0) { ffpmsg("error reading null value for compressed tile"); return (*status); } } /* ************************************************************* */ /* allocate memory for the uncompressed array of tile integers */ /* The size depends on the datatype and the compression type. */ if ((infptr->Fptr)->compress_type == HCOMPRESS_1 && ((infptr->Fptr)->zbitpix != BYTE_IMG && (infptr->Fptr)->zbitpix != SHORT_IMG) ) { idatalen = tilelen * sizeof(LONGLONG); /* 8 bytes per pixel */ } else if ( (infptr->Fptr)->compress_type == RICE_1 && (infptr->Fptr)->zbitpix == BYTE_IMG && (infptr->Fptr)->rice_bytepix == 1) { idatalen = tilelen * sizeof(char); /* 1 byte per pixel */ } else if ( ( (infptr->Fptr)->compress_type == GZIP_1 || (infptr->Fptr)->compress_type == GZIP_2 || (infptr->Fptr)->compress_type == BZIP2_1 ) && (infptr->Fptr)->zbitpix == BYTE_IMG ) { idatalen = tilelen * sizeof(char); /* 1 byte per pixel */ } else if ( (infptr->Fptr)->compress_type == RICE_1 && (infptr->Fptr)->zbitpix == SHORT_IMG && (infptr->Fptr)->rice_bytepix == 2) { idatalen = tilelen * sizeof(short); /* 2 bytes per pixel */ } else if ( ( (infptr->Fptr)->compress_type == GZIP_1 || (infptr->Fptr)->compress_type == GZIP_2 || (infptr->Fptr)->compress_type == BZIP2_1 ) && (infptr->Fptr)->zbitpix == SHORT_IMG ) { idatalen = tilelen * sizeof(short); /* 2 bytes per pixel */ } else if ( ( (infptr->Fptr)->compress_type == GZIP_1 || (infptr->Fptr)->compress_type == GZIP_2 || (infptr->Fptr)->compress_type == BZIP2_1 ) && (infptr->Fptr)->zbitpix == DOUBLE_IMG ) { idatalen = tilelen * sizeof(double); /* 8 bytes per pixel */ } else { idatalen = tilelen * sizeof(int); /* all other cases have int pixels */ } idata = (int*) malloc (idatalen); if (idata == NULL) { ffpmsg("Memory allocation failure for idata. (imcomp_decompress_tile)"); return (*status = MEMORY_ALLOCATION); } /* ************************************************************* */ /* allocate memory for the compressed bytes */ if ((infptr->Fptr)->compress_type == PLIO_1) { cbuf = (unsigned char *) malloc (nelem * sizeof (short)); } else { cbuf = (unsigned char *) malloc (nelem); } if (cbuf == NULL) { ffpmsg("Out of memory for cbuf. (imcomp_decompress_tile)"); free(idata); return (*status = MEMORY_ALLOCATION); } /* ************************************************************* */ /* read the compressed bytes from the FITS file */ if ((infptr->Fptr)->compress_type == PLIO_1) { fits_read_col(infptr, TSHORT, (infptr->Fptr)->cn_compressed, nrow, 1, nelem, &snull, (short *) cbuf, NULL, status); } else { fits_read_col(infptr, TBYTE, (infptr->Fptr)->cn_compressed, nrow, 1, nelem, &charnull, cbuf, NULL, status); } if (*status > 0) { ffpmsg("error reading compressed byte stream from binary table"); free (cbuf); free(idata); return (*status); } /* ************************************************************* */ /* call the algorithm-specific code to uncompress the tile */ if ((infptr->Fptr)->compress_type == RICE_1) { blocksize = (infptr->Fptr)->rice_blocksize; if ((infptr->Fptr)->rice_bytepix == 1 ) { *status = fits_rdecomp_byte (cbuf, nelem, (unsigned char *)idata, tilelen, blocksize); tiledatatype = TBYTE; } else if ((infptr->Fptr)->rice_bytepix == 2 ) { *status = fits_rdecomp_short (cbuf, nelem, (unsigned short *)idata, tilelen, blocksize); tiledatatype = TSHORT; } else { *status = fits_rdecomp (cbuf, nelem, (unsigned int *)idata, tilelen, blocksize); tiledatatype = TINT; } /* ************************************************************* */ } else if ((infptr->Fptr)->compress_type == HCOMPRESS_1) { smooth = (infptr->Fptr)->hcomp_smooth; if ( ((infptr->Fptr)->zbitpix == BYTE_IMG || (infptr->Fptr)->zbitpix == SHORT_IMG)) { *status = fits_hdecompress(cbuf, smooth, idata, &nx, &ny, &scale, status); } else { /* zbitpix = LONG_IMG (32) */ /* idata must have been allocated twice as large for this to work */ *status = fits_hdecompress64(cbuf, smooth, (LONGLONG *) idata, &nx, &ny, &scale, status); } tiledatatype = TINT; /* ************************************************************* */ } else if ((infptr->Fptr)->compress_type == PLIO_1) { pl_l2pi ((short *) cbuf, 1, idata, tilelen); /* uncompress the data */ tiledatatype = TINT; /* ************************************************************* */ } else if ( ((infptr->Fptr)->compress_type == GZIP_1) || ((infptr->Fptr)->compress_type == GZIP_2) ) { uncompress2mem_from_mem ((char *)cbuf, nelem, (char **) &idata, &idatalen, realloc, &tilebytesize, status); /* determine the data type of the uncompressed array, and */ /* do byte unshuffling and unswapping if needed */ if (tilebytesize == (size_t) (tilelen * 2)) { /* this is a short I*2 array */ tiledatatype = TSHORT; if ( (infptr->Fptr)->compress_type == GZIP_2 ) fits_unshuffle_2bytes((char *) idata, tilelen, status); #if BYTESWAPPED ffswap2((short *) idata, tilelen); #endif } else if (tilebytesize == (size_t) (tilelen * 4)) { /* this is a int I*4 array (or maybe R*4) */ tiledatatype = TINT; if ( (infptr->Fptr)->compress_type == GZIP_2 ) fits_unshuffle_4bytes((char *) idata, tilelen, status); #if BYTESWAPPED ffswap4(idata, tilelen); #endif } else if (tilebytesize == (size_t) (tilelen * 8)) { /* this is a R*8 double array */ tiledatatype = TDOUBLE; if ( (infptr->Fptr)->compress_type == GZIP_2 ) fits_unshuffle_8bytes((char *) idata, tilelen, status); #if BYTESWAPPED ffswap8((double *) idata, tilelen); #endif } else if (tilebytesize == (size_t) tilelen) { /* this is an unsigned char I*1 array */ tiledatatype = TBYTE; } else { ffpmsg("error: uncompressed tile has wrong size"); free(idata); return (*status = DATA_DECOMPRESSION_ERR); } /* ************************************************************* */ } else if ((infptr->Fptr)->compress_type == BZIP2_1) { /* BZIP2 is not supported in the public release; this is only for test purposes if (BZ2_bzBuffToBuffDecompress ((char *) idata, &idatalen, (char *)cbuf, (unsigned int) nelem, 0, 0) ) */ { ffpmsg("bzip2 decompression error"); free(idata); free (cbuf); return (*status = DATA_DECOMPRESSION_ERR); } if ((infptr->Fptr)->zbitpix == BYTE_IMG) { tiledatatype = TBYTE; } else if ((infptr->Fptr)->zbitpix == SHORT_IMG) { tiledatatype = TSHORT; #if BYTESWAPPED ffswap2((short *) idata, tilelen); #endif } else { tiledatatype = TINT; #if BYTESWAPPED ffswap4(idata, tilelen); #endif } /* ************************************************************* */ } else { ffpmsg("unknown compression algorithm"); free(idata); return (*status = DATA_DECOMPRESSION_ERR); } free(cbuf); if (*status) { /* error uncompressing the tile */ free(idata); return (*status); } /* ************************************************************* */ /* copy the uncompressed tile data to the output buffer, doing */ /* null checking, datatype conversion and linear scaling, if necessary */ if (nulval == 0) nulval = &dummy; /* set address to dummy value */ if (datatype == TSHORT) { pixlen = sizeof(short); if ((infptr->Fptr)->quantize_level == NO_QUANTIZE) { /* the floating point pixels were losselessly compressed with GZIP */ /* Just have to copy the values to the output array */ if (tiledatatype == TINT) { fffr4i2((float *) idata, tilelen, bscale, bzero, nullcheck, *(short *) nulval, bnullarray, anynul, (short *) buffer, status); } else { fffr8i2((double *) idata, tilelen, bscale, bzero, nullcheck, *(short *) nulval, bnullarray, anynul, (short *) buffer, status); } } else if (tiledatatype == TINT) if ((infptr->Fptr)->compress_type == PLIO_1 && bzero == 0. && actual_bzero == 32768.) { /* special case where unsigned 16-bit integers have been */ /* offset by +32768 when using PLIO */ fffi4i2(idata, tilelen, bscale, -32768., nullcheck, tnull, *(short *) nulval, bnullarray, anynul, (short *) buffer, status); } else { fffi4i2(idata, tilelen, bscale, bzero, nullcheck, tnull, *(short *) nulval, bnullarray, anynul, (short *) buffer, status); /* Hcompress is a special case: ignore any numerical overflow errors that may have occurred during the integer*4 to integer*2 convertion. Overflows can happen when a lossy Hcompress algorithm is invoked (with a non-zero scale factor). The fffi4i2 routine clips the returned values to be within the legal I*2 range, so all we need to is to reset the error status to zero. */ if ((infptr->Fptr)->compress_type == HCOMPRESS_1) { if (*status == NUM_OVERFLOW) *status = 0; } } else if (tiledatatype == TSHORT) fffi2i2((short *)idata, tilelen, bscale, bzero, nullcheck, (short) tnull, *(short *) nulval, bnullarray, anynul, (short *) buffer, status); else if (tiledatatype == TBYTE) fffi1i2((unsigned char *)idata, tilelen, bscale, bzero, nullcheck, (unsigned char) tnull, *(short *) nulval, bnullarray, anynul, (short *) buffer, status); } else if (datatype == TINT) { pixlen = sizeof(int); if ((infptr->Fptr)->quantize_level == NO_QUANTIZE) { /* the floating point pixels were losselessly compressed with GZIP */ /* Just have to copy the values to the output array */ if (tiledatatype == TINT) { fffr4int((float *) idata, tilelen, bscale, bzero, nullcheck, *(int *) nulval, bnullarray, anynul, (int *) buffer, status); } else { fffr8int((double *) idata, tilelen, bscale, bzero, nullcheck, *(int *) nulval, bnullarray, anynul, (int *) buffer, status); } } else if (tiledatatype == TINT) fffi4int(idata, (long) tilelen, bscale, bzero, nullcheck, tnull, *(int *) nulval, bnullarray, anynul, (int *) buffer, status); else if (tiledatatype == TSHORT) fffi2int((short *)idata, tilelen, bscale, bzero, nullcheck, (short) tnull, *(int *) nulval, bnullarray, anynul, (int *) buffer, status); else if (tiledatatype == TBYTE) fffi1int((unsigned char *)idata, tilelen, bscale, bzero, nullcheck, (unsigned char) tnull, *(int *) nulval, bnullarray, anynul, (int *) buffer, status); } else if (datatype == TLONG) { pixlen = sizeof(long); if ((infptr->Fptr)->quantize_level == NO_QUANTIZE) { /* the floating point pixels were losselessly compressed with GZIP */ /* Just have to copy the values to the output array */ if (tiledatatype == TINT) { fffr4i4((float *) idata, tilelen, bscale, bzero, nullcheck, *(long *) nulval, bnullarray, anynul, (long *) buffer, status); } else { fffr8i4((double *) idata, tilelen, bscale, bzero, nullcheck, *(long *) nulval, bnullarray, anynul, (long *) buffer, status); } } else if (tiledatatype == TINT) fffi4i4(idata, tilelen, bscale, bzero, nullcheck, tnull, *(long *) nulval, bnullarray, anynul, (long *) buffer, status); else if (tiledatatype == TSHORT) fffi2i4((short *)idata, tilelen, bscale, bzero, nullcheck, (short) tnull, *(long *) nulval, bnullarray, anynul, (long *) buffer, status); else if (tiledatatype == TBYTE) fffi1i4((unsigned char *)idata, tilelen, bscale, bzero, nullcheck, (unsigned char) tnull, *(long *) nulval, bnullarray, anynul, (long *) buffer, status); } else if (datatype == TFLOAT) { pixlen = sizeof(float); if (nulval) { fnulval = *(float *) nulval; } if ((infptr->Fptr)->quantize_level == NO_QUANTIZE) { /* the floating point pixels were losselessly compressed with GZIP */ /* Just have to copy the values to the output array */ if (tiledatatype == TINT) { fffr4r4((float *) idata, tilelen, bscale, bzero, nullcheck, fnulval, bnullarray, anynul, (float *) buffer, status); } else { fffr8r4((double *) idata, tilelen, bscale, bzero, nullcheck, fnulval, bnullarray, anynul, (float *) buffer, status); } } else if ((infptr->Fptr)->quantize_method == SUBTRACTIVE_DITHER_1 || (infptr->Fptr)->quantize_method == SUBTRACTIVE_DITHER_2) { /* use the new dithering algorithm (introduced in July 2009) */ if (tiledatatype == TINT) unquantize_i4r4(nrow + (infptr->Fptr)->dither_seed - 1, idata, tilelen, bscale, bzero, (infptr->Fptr)->quantize_method, nullcheck, tnull, fnulval, bnullarray, anynul, (float *) buffer, status); else if (tiledatatype == TSHORT) unquantize_i2r4(nrow + (infptr->Fptr)->dither_seed - 1, (short *)idata, tilelen, bscale, bzero, (infptr->Fptr)->quantize_method, nullcheck, (short) tnull, fnulval, bnullarray, anynul, (float *) buffer, status); else if (tiledatatype == TBYTE) unquantize_i1r4(nrow + (infptr->Fptr)->dither_seed - 1, (unsigned char *)idata, tilelen, bscale, bzero, (infptr->Fptr)->quantize_method, nullcheck, (unsigned char) tnull, fnulval, bnullarray, anynul, (float *) buffer, status); } else { /* use the old "round to nearest level" quantization algorithm */ if (tiledatatype == TINT) fffi4r4(idata, tilelen, bscale, bzero, nullcheck, tnull, fnulval, bnullarray, anynul, (float *) buffer, status); else if (tiledatatype == TSHORT) fffi2r4((short *)idata, tilelen, bscale, bzero, nullcheck, (short) tnull, fnulval, bnullarray, anynul, (float *) buffer, status); else if (tiledatatype == TBYTE) fffi1r4((unsigned char *)idata, tilelen, bscale, bzero, nullcheck, (unsigned char) tnull, fnulval, bnullarray, anynul, (float *) buffer, status); } } else if (datatype == TDOUBLE) { pixlen = sizeof(double); if (nulval) { dnulval = *(double *) nulval; } if ((infptr->Fptr)->quantize_level == NO_QUANTIZE) { /* the floating point pixels were losselessly compressed with GZIP */ /* Just have to copy the values to the output array */ if (tiledatatype == TINT) { fffr4r8((float *) idata, tilelen, bscale, bzero, nullcheck, dnulval, bnullarray, anynul, (double *) buffer, status); } else { fffr8r8((double *) idata, tilelen, bscale, bzero, nullcheck, dnulval, bnullarray, anynul, (double *) buffer, status); } } else if ((infptr->Fptr)->quantize_method == SUBTRACTIVE_DITHER_1 || (infptr->Fptr)->quantize_method == SUBTRACTIVE_DITHER_2) { /* use the new dithering algorithm (introduced in July 2009) */ if (tiledatatype == TINT) unquantize_i4r8(nrow + (infptr->Fptr)->dither_seed - 1, idata, tilelen, bscale, bzero, (infptr->Fptr)->quantize_method, nullcheck, tnull, dnulval, bnullarray, anynul, (double *) buffer, status); else if (tiledatatype == TSHORT) unquantize_i2r8(nrow + (infptr->Fptr)->dither_seed - 1, (short *)idata, tilelen, bscale, bzero, (infptr->Fptr)->quantize_method, nullcheck, (short) tnull, dnulval, bnullarray, anynul, (double *) buffer, status); else if (tiledatatype == TBYTE) unquantize_i1r8(nrow + (infptr->Fptr)->dither_seed - 1, (unsigned char *)idata, tilelen, bscale, bzero, (infptr->Fptr)->quantize_method, nullcheck, (unsigned char) tnull, dnulval, bnullarray, anynul, (double *) buffer, status); } else { /* use the old "round to nearest level" quantization algorithm */ if (tiledatatype == TINT) fffi4r8(idata, tilelen, bscale, bzero, nullcheck, tnull, dnulval, bnullarray, anynul, (double *) buffer, status); else if (tiledatatype == TSHORT) fffi2r8((short *)idata, tilelen, bscale, bzero, nullcheck, (short) tnull, dnulval, bnullarray, anynul, (double *) buffer, status); else if (tiledatatype == TBYTE) fffi1r8((unsigned char *)idata, tilelen, bscale, bzero, nullcheck, (unsigned char) tnull, dnulval, bnullarray, anynul, (double *) buffer, status); } } else if (datatype == TBYTE) { pixlen = sizeof(char); if (tiledatatype == TINT) fffi4i1(idata, tilelen, bscale, bzero, nullcheck, tnull, *(unsigned char *) nulval, bnullarray, anynul, (unsigned char *) buffer, status); else if (tiledatatype == TSHORT) fffi2i1((short *)idata, tilelen, bscale, bzero, nullcheck, (short) tnull, *(unsigned char *) nulval, bnullarray, anynul, (unsigned char *) buffer, status); else if (tiledatatype == TBYTE) fffi1i1((unsigned char *)idata, tilelen, bscale, bzero, nullcheck, (unsigned char) tnull, *(unsigned char *) nulval, bnullarray, anynul, (unsigned char *) buffer, status); } else if (datatype == TSBYTE) { pixlen = sizeof(char); if (tiledatatype == TINT) fffi4s1(idata, tilelen, bscale, bzero, nullcheck, tnull, *(signed char *) nulval, bnullarray, anynul, (signed char *) buffer, status); else if (tiledatatype == TSHORT) fffi2s1((short *)idata, tilelen, bscale, bzero, nullcheck, (short) tnull, *(signed char *) nulval, bnullarray, anynul, (signed char *) buffer, status); else if (tiledatatype == TBYTE) fffi1s1((unsigned char *)idata, tilelen, bscale, bzero, nullcheck, (unsigned char) tnull, *(signed char *) nulval, bnullarray, anynul, (signed char *) buffer, status); } else if (datatype == TUSHORT) { pixlen = sizeof(short); if ((infptr->Fptr)->quantize_level == NO_QUANTIZE) { /* the floating point pixels were losselessly compressed with GZIP */ /* Just have to copy the values to the output array */ if (tiledatatype == TINT) { fffr4u2((float *) idata, tilelen, bscale, bzero, nullcheck, *(unsigned short *) nulval, bnullarray, anynul, (unsigned short *) buffer, status); } else { fffr8u2((double *) idata, tilelen, bscale, bzero, nullcheck, *(unsigned short *) nulval, bnullarray, anynul, (unsigned short *) buffer, status); } } else if (tiledatatype == TINT) fffi4u2(idata, tilelen, bscale, bzero, nullcheck, tnull, *(unsigned short *) nulval, bnullarray, anynul, (unsigned short *) buffer, status); else if (tiledatatype == TSHORT) fffi2u2((short *)idata, tilelen, bscale, bzero, nullcheck, (short) tnull, *(unsigned short *) nulval, bnullarray, anynul, (unsigned short *) buffer, status); else if (tiledatatype == TBYTE) fffi1u2((unsigned char *)idata, tilelen, bscale, bzero, nullcheck, (unsigned char) tnull, *(unsigned short *) nulval, bnullarray, anynul, (unsigned short *) buffer, status); } else if (datatype == TUINT) { pixlen = sizeof(int); if ((infptr->Fptr)->quantize_level == NO_QUANTIZE) { /* the floating point pixels were losselessly compressed with GZIP */ /* Just have to copy the values to the output array */ if (tiledatatype == TINT) { fffr4uint((float *) idata, tilelen, bscale, bzero, nullcheck, *(unsigned int *) nulval, bnullarray, anynul, (unsigned int *) buffer, status); } else { fffr8uint((double *) idata, tilelen, bscale, bzero, nullcheck, *(unsigned int *) nulval, bnullarray, anynul, (unsigned int *) buffer, status); } } else if (tiledatatype == TINT) fffi4uint(idata, tilelen, bscale, bzero, nullcheck, tnull, *(unsigned int *) nulval, bnullarray, anynul, (unsigned int *) buffer, status); else if (tiledatatype == TSHORT) fffi2uint((short *)idata, tilelen, bscale, bzero, nullcheck, (short) tnull, *(unsigned int *) nulval, bnullarray, anynul, (unsigned int *) buffer, status); else if (tiledatatype == TBYTE) fffi1uint((unsigned char *)idata, tilelen, bscale, bzero, nullcheck, (unsigned char) tnull, *(unsigned int *) nulval, bnullarray, anynul, (unsigned int *) buffer, status); } else if (datatype == TULONG) { pixlen = sizeof(long); if ((infptr->Fptr)->quantize_level == NO_QUANTIZE) { /* the floating point pixels were losselessly compressed with GZIP */ /* Just have to copy the values to the output array */ if (tiledatatype == TINT) { fffr4u4((float *) idata, tilelen, bscale, bzero, nullcheck, *(unsigned long *) nulval, bnullarray, anynul, (unsigned long *) buffer, status); } else { fffr8u4((double *) idata, tilelen, bscale, bzero, nullcheck, *(unsigned long *) nulval, bnullarray, anynul, (unsigned long *) buffer, status); } } else if (tiledatatype == TINT) fffi4u4(idata, tilelen, bscale, bzero, nullcheck, tnull, *(unsigned long *) nulval, bnullarray, anynul, (unsigned long *) buffer, status); else if (tiledatatype == TSHORT) fffi2u4((short *)idata, tilelen, bscale, bzero, nullcheck, (short) tnull, *(unsigned long *) nulval, bnullarray, anynul, (unsigned long *) buffer, status); else if (tiledatatype == TBYTE) fffi1u4((unsigned char *)idata, tilelen, bscale, bzero, nullcheck, (unsigned char) tnull, *(unsigned long *) nulval, bnullarray, anynul, (unsigned long *) buffer, status); } else *status = BAD_DATATYPE; free(idata); /* don't need the uncompressed tile any more */ /* **************************************************************** */ /* cache the tile, in case the application wants it again */ /* Don't cache the tile if tile is a single row of the image; it is less likely that the cache will be used in this cases, so it is not worth the time and the memory overheads. */ if ((infptr->Fptr)->tilerow) { /* make sure cache has been allocated */ if ((infptr->Fptr)->znaxis[0] != (infptr->Fptr)->tilesize[0] || (infptr->Fptr)->tilesize[1] != 1 ) { tilesize = pixlen * tilelen; /* check that tile size/type has not changed */ if (tilesize != (infptr->Fptr)->tiledatasize[tilecol] || datatype != (infptr->Fptr)->tiletype[tilecol] ) { if (((infptr->Fptr)->tiledata)[tilecol]) { free(((infptr->Fptr)->tiledata)[tilecol]); } if (((infptr->Fptr)->tilenullarray)[tilecol]) { free(((infptr->Fptr)->tilenullarray)[tilecol]); } ((infptr->Fptr)->tilenullarray)[tilecol] = 0; ((infptr->Fptr)->tilerow)[tilecol] = 0; ((infptr->Fptr)->tiledatasize)[tilecol] = 0; ((infptr->Fptr)->tiletype)[tilecol] = 0; /* allocate new array(s) */ ((infptr->Fptr)->tiledata)[tilecol] = malloc(tilesize); if (((infptr->Fptr)->tiledata)[tilecol] == 0) return (*status); if (nullcheck == 2) { /* also need array of null pixel flags */ (infptr->Fptr)->tilenullarray[tilecol] = malloc(tilelen); if ((infptr->Fptr)->tilenullarray[tilecol] == 0) return (*status); } (infptr->Fptr)->tiledatasize[tilecol] = tilesize; (infptr->Fptr)->tiletype[tilecol] = datatype; } /* copy the tile array(s) into cache buffer */ memcpy((infptr->Fptr)->tiledata[tilecol], buffer, tilesize); if (nullcheck == 2) { if ((infptr->Fptr)->tilenullarray == 0) { (infptr->Fptr)->tilenullarray[tilecol] = malloc(tilelen); } memcpy((infptr->Fptr)->tilenullarray[tilecol], bnullarray, tilelen); } (infptr->Fptr)->tilerow[tilecol] = nrow; (infptr->Fptr)->tileanynull[tilecol] = *anynul; } } return (*status); } /*--------------------------------------------------------------------------*/ int imcomp_test_overlap ( int ndim, /* I - number of dimension in the tile and image */ long *tfpixel, /* I - first pixel number in each dim. of the tile */ long *tlpixel, /* I - last pixel number in each dim. of the tile */ long *fpixel, /* I - first pixel number in each dim. of the image */ long *lpixel, /* I - last pixel number in each dim. of the image */ long *ininc, /* I - increment to be applied in each image dimen. */ int *status) /* test if there are any intersecting pixels between this tile and the section of the image defined by fixel, lpixel, ininc. */ { long imgdim[MAX_COMPRESS_DIM]; /* product of preceding dimensions in the */ /* output image, allowing for inc factor */ long tiledim[MAX_COMPRESS_DIM]; /* product of preceding dimensions in the */ /* tile, array; inc factor is not relevant */ long imgfpix[MAX_COMPRESS_DIM]; /* 1st img pix overlapping tile: 0 base, */ /* allowing for inc factor */ long imglpix[MAX_COMPRESS_DIM]; /* last img pix overlapping tile 0 base, */ /* allowing for inc factor */ long tilefpix[MAX_COMPRESS_DIM]; /* 1st tile pix overlapping img 0 base, */ /* allowing for inc factor */ long inc[MAX_COMPRESS_DIM]; /* local copy of input ininc */ int ii; long tf, tl; if (*status > 0) return(*status); /* ------------------------------------------------------------ */ /* calc amount of overlap in each dimension; if there is zero */ /* overlap in any dimension then just return */ /* ------------------------------------------------------------ */ for (ii = 0; ii < ndim; ii++) { if (tlpixel[ii] < fpixel[ii] || tfpixel[ii] > lpixel[ii]) return(0); /* there are no overlapping pixels */ inc[ii] = ininc[ii]; /* calc dimensions of the output image section */ imgdim[ii] = (lpixel[ii] - fpixel[ii]) / labs(inc[ii]) + 1; if (imgdim[ii] < 1) { *status = NEG_AXIS; return(0); } /* calc dimensions of the tile */ tiledim[ii] = tlpixel[ii] - tfpixel[ii] + 1; if (tiledim[ii] < 1) { *status = NEG_AXIS; return(0); } if (ii > 0) tiledim[ii] *= tiledim[ii - 1]; /* product of dimensions */ /* first and last pixels in image that overlap with the tile, 0 base */ tf = tfpixel[ii] - 1; tl = tlpixel[ii] - 1; /* skip this plane if it falls in the cracks of the subsampled image */ while ((tf-(fpixel[ii] - 1)) % labs(inc[ii])) { tf++; if (tf > tl) return(0); /* no overlapping pixels */ } while ((tl-(fpixel[ii] - 1)) % labs(inc[ii])) { tl--; if (tf > tl) return(0); /* no overlapping pixels */ } imgfpix[ii] = maxvalue((tf - fpixel[ii] +1) / labs(inc[ii]) , 0); imglpix[ii] = minvalue((tl - fpixel[ii] +1) / labs(inc[ii]) , imgdim[ii] - 1); /* first pixel in the tile that overlaps with the image (0 base) */ tilefpix[ii] = maxvalue(fpixel[ii] - tfpixel[ii], 0); while ((tfpixel[ii] + tilefpix[ii] - fpixel[ii]) % labs(inc[ii])) { (tilefpix[ii])++; if (tilefpix[ii] >= tiledim[ii]) return(0); /* no overlapping pixels */ } if (ii > 0) imgdim[ii] *= imgdim[ii - 1]; /* product of dimensions */ } return(1); /* there appears to be intersecting pixels */ } /*--------------------------------------------------------------------------*/ int imcomp_copy_overlap ( char *tile, /* I - multi dimensional array of tile pixels */ int pixlen, /* I - number of bytes in each tile or image pixel */ int ndim, /* I - number of dimension in the tile and image */ long *tfpixel, /* I - first pixel number in each dim. of the tile */ long *tlpixel, /* I - last pixel number in each dim. of the tile */ char *bnullarray, /* I - array of null flags; used if nullcheck = 2 */ char *image, /* O - multi dimensional output image */ long *fpixel, /* I - first pixel number in each dim. of the image */ long *lpixel, /* I - last pixel number in each dim. of the image */ long *ininc, /* I - increment to be applied in each image dimen. */ int nullcheck, /* I - 0, 1: do nothing; 2: set nullarray for nulls */ char *nullarray, int *status) /* copy the intersecting pixels from a decompressed tile to the output image. Both the tile and the image must have the same number of dimensions. */ { long imgdim[MAX_COMPRESS_DIM]; /* product of preceding dimensions in the */ /* output image, allowing for inc factor */ long tiledim[MAX_COMPRESS_DIM]; /* product of preceding dimensions in the */ /* tile, array; inc factor is not relevant */ long imgfpix[MAX_COMPRESS_DIM]; /* 1st img pix overlapping tile: 0 base, */ /* allowing for inc factor */ long imglpix[MAX_COMPRESS_DIM]; /* last img pix overlapping tile 0 base, */ /* allowing for inc factor */ long tilefpix[MAX_COMPRESS_DIM]; /* 1st tile pix overlapping img 0 base, */ /* allowing for inc factor */ long inc[MAX_COMPRESS_DIM]; /* local copy of input ininc */ long i1, i2, i3, i4; /* offset along each axis of the image */ long it1, it2, it3, it4; long im1, im2, im3, im4; /* offset to image pixel, allowing for inc */ long ipos, tf, tl; long t2, t3, t4; /* offset along each axis of the tile */ long tilepix, imgpix, tilepixbyte, imgpixbyte; int ii, overlap_bytes, overlap_flags; if (*status > 0) return(*status); for (ii = 0; ii < MAX_COMPRESS_DIM; ii++) { /* set default values for higher dimensions */ inc[ii] = 1; imgdim[ii] = 1; tiledim[ii] = 1; imgfpix[ii] = 0; imglpix[ii] = 0; tilefpix[ii] = 0; } /* ------------------------------------------------------------ */ /* calc amount of overlap in each dimension; if there is zero */ /* overlap in any dimension then just return */ /* ------------------------------------------------------------ */ for (ii = 0; ii < ndim; ii++) { if (tlpixel[ii] < fpixel[ii] || tfpixel[ii] > lpixel[ii]) return(*status); /* there are no overlapping pixels */ inc[ii] = ininc[ii]; /* calc dimensions of the output image section */ imgdim[ii] = (lpixel[ii] - fpixel[ii]) / labs(inc[ii]) + 1; if (imgdim[ii] < 1) return(*status = NEG_AXIS); /* calc dimensions of the tile */ tiledim[ii] = tlpixel[ii] - tfpixel[ii] + 1; if (tiledim[ii] < 1) return(*status = NEG_AXIS); if (ii > 0) tiledim[ii] *= tiledim[ii - 1]; /* product of dimensions */ /* first and last pixels in image that overlap with the tile, 0 base */ tf = tfpixel[ii] - 1; tl = tlpixel[ii] - 1; /* skip this plane if it falls in the cracks of the subsampled image */ while ((tf-(fpixel[ii] - 1)) % labs(inc[ii])) { tf++; if (tf > tl) return(*status); /* no overlapping pixels */ } while ((tl-(fpixel[ii] - 1)) % labs(inc[ii])) { tl--; if (tf > tl) return(*status); /* no overlapping pixels */ } imgfpix[ii] = maxvalue((tf - fpixel[ii] +1) / labs(inc[ii]) , 0); imglpix[ii] = minvalue((tl - fpixel[ii] +1) / labs(inc[ii]) , imgdim[ii] - 1); /* first pixel in the tile that overlaps with the image (0 base) */ tilefpix[ii] = maxvalue(fpixel[ii] - tfpixel[ii], 0); while ((tfpixel[ii] + tilefpix[ii] - fpixel[ii]) % labs(inc[ii])) { (tilefpix[ii])++; if (tilefpix[ii] >= tiledim[ii]) return(*status); /* no overlapping pixels */ } /* printf("ii tfpixel, tlpixel %d %d %d \n",ii, tfpixel[ii], tlpixel[ii]); printf("ii, tf, tl, imgfpix,imglpix, tilefpix %d %d %d %d %d %d\n",ii, tf,tl,imgfpix[ii], imglpix[ii],tilefpix[ii]); */ if (ii > 0) imgdim[ii] *= imgdim[ii - 1]; /* product of dimensions */ } /* ---------------------------------------------------------------- */ /* calc number of pixels in each row (first dimension) that overlap */ /* multiply by pixlen to get number of bytes to copy in each loop */ /* ---------------------------------------------------------------- */ if (inc[0] != 1) overlap_flags = 1; /* can only copy 1 pixel at a time */ else overlap_flags = imglpix[0] - imgfpix[0] + 1; /* can copy whole row */ overlap_bytes = overlap_flags * pixlen; /* support up to 5 dimensions for now */ for (i4 = 0, it4=0; i4 <= imglpix[4] - imgfpix[4]; i4++, it4++) { /* increment plane if it falls in the cracks of the subsampled image */ while (ndim > 4 && (tfpixel[4] + tilefpix[4] - fpixel[4] + it4) % labs(inc[4]) != 0) it4++; /* offset to start of hypercube */ if (inc[4] > 0) im4 = (i4 + imgfpix[4]) * imgdim[3]; else im4 = imgdim[4] - (i4 + 1 + imgfpix[4]) * imgdim[3]; t4 = (tilefpix[4] + it4) * tiledim[3]; for (i3 = 0, it3=0; i3 <= imglpix[3] - imgfpix[3]; i3++, it3++) { /* increment plane if it falls in the cracks of the subsampled image */ while (ndim > 3 && (tfpixel[3] + tilefpix[3] - fpixel[3] + it3) % labs(inc[3]) != 0) it3++; /* offset to start of cube */ if (inc[3] > 0) im3 = (i3 + imgfpix[3]) * imgdim[2] + im4; else im3 = imgdim[3] - (i3 + 1 + imgfpix[3]) * imgdim[2] + im4; t3 = (tilefpix[3] + it3) * tiledim[2] + t4; /* loop through planes of the image */ for (i2 = 0, it2=0; i2 <= imglpix[2] - imgfpix[2]; i2++, it2++) { /* incre plane if it falls in the cracks of the subsampled image */ while (ndim > 2 && (tfpixel[2] + tilefpix[2] - fpixel[2] + it2) % labs(inc[2]) != 0) it2++; /* offset to start of plane */ if (inc[2] > 0) im2 = (i2 + imgfpix[2]) * imgdim[1] + im3; else im2 = imgdim[2] - (i2 + 1 + imgfpix[2]) * imgdim[1] + im3; t2 = (tilefpix[2] + it2) * tiledim[1] + t3; /* loop through rows of the image */ for (i1 = 0, it1=0; i1 <= imglpix[1] - imgfpix[1]; i1++, it1++) { /* incre row if it falls in the cracks of the subsampled image */ while (ndim > 1 && (tfpixel[1] + tilefpix[1] - fpixel[1] + it1) % labs(inc[1]) != 0) it1++; /* calc position of first pixel in tile to be copied */ tilepix = tilefpix[0] + (tilefpix[1] + it1) * tiledim[0] + t2; /* offset to start of row */ if (inc[1] > 0) im1 = (i1 + imgfpix[1]) * imgdim[0] + im2; else im1 = imgdim[1] - (i1 + 1 + imgfpix[1]) * imgdim[0] + im2; /* printf("inc = %d %d %d %d\n",inc[0],inc[1],inc[2],inc[3]); printf("im1,im2,im3,im4 = %d %d %d %d\n",im1,im2,im3,im4); */ /* offset to byte within the row */ if (inc[0] > 0) imgpix = imgfpix[0] + im1; else imgpix = imgdim[0] - 1 - imgfpix[0] + im1; /* printf("tilefpix0,1, imgfpix1, it1, inc1, t2= %d %d %d %d %d %d\n", tilefpix[0],tilefpix[1],imgfpix[1],it1,inc[1], t2); printf("i1, it1, tilepix, imgpix %d %d %d %d \n", i1, it1, tilepix, imgpix); */ /* loop over pixels along one row of the image */ for (ipos = imgfpix[0]; ipos <= imglpix[0]; ipos += overlap_flags) { if (nullcheck == 2) { /* copy overlapping null flags from tile to image */ memcpy(nullarray + imgpix, bnullarray + tilepix, overlap_flags); } /* convert from image pixel to byte offset */ tilepixbyte = tilepix * pixlen; imgpixbyte = imgpix * pixlen; /* printf(" tilepix, tilepixbyte, imgpix, imgpixbyte= %d %d %d %d\n", tilepix, tilepixbyte, imgpix, imgpixbyte); */ /* copy overlapping row of pixels from tile to image */ memcpy(image + imgpixbyte, tile + tilepixbyte, overlap_bytes); tilepix += (overlap_flags * labs(inc[0])); if (inc[0] > 0) imgpix += overlap_flags; else imgpix -= overlap_flags; } } } } } return(*status); } /*--------------------------------------------------------------------------*/ int imcomp_merge_overlap ( char *tile, /* O - multi dimensional array of tile pixels */ int pixlen, /* I - number of bytes in each tile or image pixel */ int ndim, /* I - number of dimension in the tile and image */ long *tfpixel, /* I - first pixel number in each dim. of the tile */ long *tlpixel, /* I - last pixel number in each dim. of the tile */ char *bnullarray, /* I - array of null flags; used if nullcheck = 2 */ char *image, /* I - multi dimensional output image */ long *fpixel, /* I - first pixel number in each dim. of the image */ long *lpixel, /* I - last pixel number in each dim. of the image */ int nullcheck, /* I - 0, 1: do nothing; 2: set nullarray for nulls */ int *status) /* Similar to imcomp_copy_overlap, except it copies the overlapping pixels from the 'image' to the 'tile'. */ { long imgdim[MAX_COMPRESS_DIM]; /* product of preceding dimensions in the */ /* output image, allowing for inc factor */ long tiledim[MAX_COMPRESS_DIM]; /* product of preceding dimensions in the */ /* tile, array; inc factor is not relevant */ long imgfpix[MAX_COMPRESS_DIM]; /* 1st img pix overlapping tile: 0 base, */ /* allowing for inc factor */ long imglpix[MAX_COMPRESS_DIM]; /* last img pix overlapping tile 0 base, */ /* allowing for inc factor */ long tilefpix[MAX_COMPRESS_DIM]; /* 1st tile pix overlapping img 0 base, */ /* allowing for inc factor */ long inc[MAX_COMPRESS_DIM]; /* local copy of input ininc */ long i1, i2, i3, i4; /* offset along each axis of the image */ long it1, it2, it3, it4; long im1, im2, im3, im4; /* offset to image pixel, allowing for inc */ long ipos, tf, tl; long t2, t3, t4; /* offset along each axis of the tile */ long tilepix, imgpix, tilepixbyte, imgpixbyte; int ii, overlap_bytes, overlap_flags; if (*status > 0) return(*status); for (ii = 0; ii < MAX_COMPRESS_DIM; ii++) { /* set default values for higher dimensions */ inc[ii] = 1; imgdim[ii] = 1; tiledim[ii] = 1; imgfpix[ii] = 0; imglpix[ii] = 0; tilefpix[ii] = 0; } /* ------------------------------------------------------------ */ /* calc amount of overlap in each dimension; if there is zero */ /* overlap in any dimension then just return */ /* ------------------------------------------------------------ */ for (ii = 0; ii < ndim; ii++) { if (tlpixel[ii] < fpixel[ii] || tfpixel[ii] > lpixel[ii]) return(*status); /* there are no overlapping pixels */ /* calc dimensions of the output image section */ imgdim[ii] = (lpixel[ii] - fpixel[ii]) / labs(inc[ii]) + 1; if (imgdim[ii] < 1) return(*status = NEG_AXIS); /* calc dimensions of the tile */ tiledim[ii] = tlpixel[ii] - tfpixel[ii] + 1; if (tiledim[ii] < 1) return(*status = NEG_AXIS); if (ii > 0) tiledim[ii] *= tiledim[ii - 1]; /* product of dimensions */ /* first and last pixels in image that overlap with the tile, 0 base */ tf = tfpixel[ii] - 1; tl = tlpixel[ii] - 1; /* skip this plane if it falls in the cracks of the subsampled image */ while ((tf-(fpixel[ii] - 1)) % labs(inc[ii])) { tf++; if (tf > tl) return(*status); /* no overlapping pixels */ } while ((tl-(fpixel[ii] - 1)) % labs(inc[ii])) { tl--; if (tf > tl) return(*status); /* no overlapping pixels */ } imgfpix[ii] = maxvalue((tf - fpixel[ii] +1) / labs(inc[ii]) , 0); imglpix[ii] = minvalue((tl - fpixel[ii] +1) / labs(inc[ii]) , imgdim[ii] - 1); /* first pixel in the tile that overlaps with the image (0 base) */ tilefpix[ii] = maxvalue(fpixel[ii] - tfpixel[ii], 0); while ((tfpixel[ii] + tilefpix[ii] - fpixel[ii]) % labs(inc[ii])) { (tilefpix[ii])++; if (tilefpix[ii] >= tiledim[ii]) return(*status); /* no overlapping pixels */ } /* printf("ii tfpixel, tlpixel %d %d %d \n",ii, tfpixel[ii], tlpixel[ii]); printf("ii, tf, tl, imgfpix,imglpix, tilefpix %d %d %d %d %d %d\n",ii, tf,tl,imgfpix[ii], imglpix[ii],tilefpix[ii]); */ if (ii > 0) imgdim[ii] *= imgdim[ii - 1]; /* product of dimensions */ } /* ---------------------------------------------------------------- */ /* calc number of pixels in each row (first dimension) that overlap */ /* multiply by pixlen to get number of bytes to copy in each loop */ /* ---------------------------------------------------------------- */ if (inc[0] != 1) overlap_flags = 1; /* can only copy 1 pixel at a time */ else overlap_flags = imglpix[0] - imgfpix[0] + 1; /* can copy whole row */ overlap_bytes = overlap_flags * pixlen; /* support up to 5 dimensions for now */ for (i4 = 0, it4=0; i4 <= imglpix[4] - imgfpix[4]; i4++, it4++) { /* increment plane if it falls in the cracks of the subsampled image */ while (ndim > 4 && (tfpixel[4] + tilefpix[4] - fpixel[4] + it4) % labs(inc[4]) != 0) it4++; /* offset to start of hypercube */ if (inc[4] > 0) im4 = (i4 + imgfpix[4]) * imgdim[3]; else im4 = imgdim[4] - (i4 + 1 + imgfpix[4]) * imgdim[3]; t4 = (tilefpix[4] + it4) * tiledim[3]; for (i3 = 0, it3=0; i3 <= imglpix[3] - imgfpix[3]; i3++, it3++) { /* increment plane if it falls in the cracks of the subsampled image */ while (ndim > 3 && (tfpixel[3] + tilefpix[3] - fpixel[3] + it3) % labs(inc[3]) != 0) it3++; /* offset to start of cube */ if (inc[3] > 0) im3 = (i3 + imgfpix[3]) * imgdim[2] + im4; else im3 = imgdim[3] - (i3 + 1 + imgfpix[3]) * imgdim[2] + im4; t3 = (tilefpix[3] + it3) * tiledim[2] + t4; /* loop through planes of the image */ for (i2 = 0, it2=0; i2 <= imglpix[2] - imgfpix[2]; i2++, it2++) { /* incre plane if it falls in the cracks of the subsampled image */ while (ndim > 2 && (tfpixel[2] + tilefpix[2] - fpixel[2] + it2) % labs(inc[2]) != 0) it2++; /* offset to start of plane */ if (inc[2] > 0) im2 = (i2 + imgfpix[2]) * imgdim[1] + im3; else im2 = imgdim[2] - (i2 + 1 + imgfpix[2]) * imgdim[1] + im3; t2 = (tilefpix[2] + it2) * tiledim[1] + t3; /* loop through rows of the image */ for (i1 = 0, it1=0; i1 <= imglpix[1] - imgfpix[1]; i1++, it1++) { /* incre row if it falls in the cracks of the subsampled image */ while (ndim > 1 && (tfpixel[1] + tilefpix[1] - fpixel[1] + it1) % labs(inc[1]) != 0) it1++; /* calc position of first pixel in tile to be copied */ tilepix = tilefpix[0] + (tilefpix[1] + it1) * tiledim[0] + t2; /* offset to start of row */ if (inc[1] > 0) im1 = (i1 + imgfpix[1]) * imgdim[0] + im2; else im1 = imgdim[1] - (i1 + 1 + imgfpix[1]) * imgdim[0] + im2; /* printf("inc = %d %d %d %d\n",inc[0],inc[1],inc[2],inc[3]); printf("im1,im2,im3,im4 = %d %d %d %d\n",im1,im2,im3,im4); */ /* offset to byte within the row */ if (inc[0] > 0) imgpix = imgfpix[0] + im1; else imgpix = imgdim[0] - 1 - imgfpix[0] + im1; /* printf("tilefpix0,1, imgfpix1, it1, inc1, t2= %d %d %d %d %d %d\n", tilefpix[0],tilefpix[1],imgfpix[1],it1,inc[1], t2); printf("i1, it1, tilepix, imgpix %d %d %d %d \n", i1, it1, tilepix, imgpix); */ /* loop over pixels along one row of the image */ for (ipos = imgfpix[0]; ipos <= imglpix[0]; ipos += overlap_flags) { /* convert from image pixel to byte offset */ tilepixbyte = tilepix * pixlen; imgpixbyte = imgpix * pixlen; /* printf(" tilepix, tilepixbyte, imgpix, imgpixbyte= %d %d %d %d\n", tilepix, tilepixbyte, imgpix, imgpixbyte); */ /* copy overlapping row of pixels from image to tile */ memcpy(tile + tilepixbyte, image + imgpixbyte, overlap_bytes); tilepix += (overlap_flags * labs(inc[0])); if (inc[0] > 0) imgpix += overlap_flags; else imgpix -= overlap_flags; } } } } } return(*status); } /*--------------------------------------------------------------------------*/ static int unquantize_i1r4(long row, /* tile number = row number in table */ unsigned char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int dither_method, /* I - dithering method to use */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ unsigned char tnull, /* I - value of FITS TNULLn keyword if any */ float nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ float *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Unquantize byte values into the scaled floating point values */ { long ii; int nextrand, iseed; if (!fits_rand_value) if (fits_init_randoms()) return(MEMORY_ALLOCATION); /* initialize the index to the next random number in the list */ iseed = (int) ((row - 1) % N_RANDOM); nextrand = (int) (fits_rand_value[iseed] * 500); if (nullcheck == 0) /* no null checking required */ { for (ii = 0; ii < ntodo; ii++) { /* if (dither_method == SUBTRACTIVE_DITHER_2 && input[ii] == ZERO_VALUE) output[ii] = 0.0; else */ output[ii] = (float) (((double) input[ii] - fits_rand_value[nextrand] + 0.5) * scale + zero); nextrand++; if (nextrand == N_RANDOM) { iseed++; if (iseed == N_RANDOM) iseed = 0; nextrand = (int) (fits_rand_value[iseed] * 500); } } } else /* must check for null values */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { /* if (dither_method == SUBTRACTIVE_DITHER_2 && input[ii] == ZERO_VALUE) output[ii] = 0.0; else */ output[ii] = (float) (((double) input[ii] - fits_rand_value[nextrand] + 0.5) * scale + zero); } nextrand++; if (nextrand == N_RANDOM) { iseed++; if (iseed == N_RANDOM) iseed = 0; nextrand = (int) (fits_rand_value[iseed] * 500); } } } return(*status); } /*--------------------------------------------------------------------------*/ static int unquantize_i2r4(long row, /* seed for random values */ short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int dither_method, /* I - dithering method to use */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ short tnull, /* I - value of FITS TNULLn keyword if any */ float nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ float *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Unquantize short integer values into the scaled floating point values */ { long ii; int nextrand, iseed; if (!fits_rand_value) if (fits_init_randoms()) return(MEMORY_ALLOCATION); /* initialize the index to the next random number in the list */ iseed = (int) ((row - 1) % N_RANDOM); nextrand = (int) (fits_rand_value[iseed] * 500); if (nullcheck == 0) /* no null checking required */ { for (ii = 0; ii < ntodo; ii++) { /* if (dither_method == SUBTRACTIVE_DITHER_2 && input[ii] == ZERO_VALUE) output[ii] = 0.0; else */ output[ii] = (float) (((double) input[ii] - fits_rand_value[nextrand] + 0.5) * scale + zero); nextrand++; if (nextrand == N_RANDOM) { iseed++; if (iseed == N_RANDOM) iseed = 0; nextrand = (int) (fits_rand_value[iseed] * 500); } } } else /* must check for null values */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { /* if (dither_method == SUBTRACTIVE_DITHER_2 && input[ii] == ZERO_VALUE) output[ii] = 0.0; else */ output[ii] = (float) (((double) input[ii] - fits_rand_value[nextrand] + 0.5) * scale + zero); } nextrand++; if (nextrand == N_RANDOM) { iseed++; if (iseed == N_RANDOM) iseed = 0; nextrand = (int) (fits_rand_value[iseed] * 500); } } } return(*status); } /*--------------------------------------------------------------------------*/ static int unquantize_i4r4(long row, /* tile number = row number in table */ INT32BIT *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int dither_method, /* I - dithering method to use */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ INT32BIT tnull, /* I - value of FITS TNULLn keyword if any */ float nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ float *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Unquantize int integer values into the scaled floating point values */ { long ii; int nextrand, iseed; if (fits_rand_value == 0) if (fits_init_randoms()) return(MEMORY_ALLOCATION); /* initialize the index to the next random number in the list */ iseed = (int) ((row - 1) % N_RANDOM); nextrand = (int) (fits_rand_value[iseed] * 500); if (nullcheck == 0) /* no null checking required */ { for (ii = 0; ii < ntodo; ii++) { if (dither_method == SUBTRACTIVE_DITHER_2 && input[ii] == ZERO_VALUE) output[ii] = 0.0; else output[ii] = (float) (((double) input[ii] - fits_rand_value[nextrand] + 0.5) * scale + zero); nextrand++; if (nextrand == N_RANDOM) { iseed++; if (iseed == N_RANDOM) iseed = 0; nextrand = (int) (fits_rand_value[iseed] * 500); } } } else /* must check for null values */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { if (dither_method == SUBTRACTIVE_DITHER_2 && input[ii] == ZERO_VALUE) output[ii] = 0.0; else output[ii] = (float) (((double) input[ii] - fits_rand_value[nextrand] + 0.5) * scale + zero); } nextrand++; if (nextrand == N_RANDOM) { iseed++; if (iseed == N_RANDOM) iseed = 0; nextrand = (int) (fits_rand_value[iseed] * 500); } } } return(*status); } /*--------------------------------------------------------------------------*/ static int unquantize_i1r8(long row, /* tile number = row number in table */ unsigned char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int dither_method, /* I - dithering method to use */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ unsigned char tnull, /* I - value of FITS TNULLn keyword if any */ double nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ double *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Unquantize byte values into the scaled floating point values */ { long ii; int nextrand, iseed; if (!fits_rand_value) if (fits_init_randoms()) return(MEMORY_ALLOCATION); /* initialize the index to the next random number in the list */ iseed = (int) ((row - 1) % N_RANDOM); nextrand = (int) (fits_rand_value[iseed] * 500); if (nullcheck == 0) /* no null checking required */ { for (ii = 0; ii < ntodo; ii++) { /* if (dither_method == SUBTRACTIVE_DITHER_2 && input[ii] == ZERO_VALUE) output[ii] = 0.0; else */ output[ii] = (double) (((double) input[ii] - fits_rand_value[nextrand] + 0.5) * scale + zero); nextrand++; if (nextrand == N_RANDOM) { iseed++; if (iseed == N_RANDOM) iseed = 0; nextrand = (int) (fits_rand_value[iseed] * 500); } } } else /* must check for null values */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { /* if (dither_method == SUBTRACTIVE_DITHER_2 && input[ii] == ZERO_VALUE) output[ii] = 0.0; else */ output[ii] = (double) (((double) input[ii] - fits_rand_value[nextrand] + 0.5) * scale + zero); } nextrand++; if (nextrand == N_RANDOM) { iseed++; if (iseed == N_RANDOM) iseed = 0; nextrand = (int) (fits_rand_value[iseed] * 500); } } } return(*status); } /*--------------------------------------------------------------------------*/ static int unquantize_i2r8(long row, /* tile number = row number in table */ short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int dither_method, /* I - dithering method to use */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ short tnull, /* I - value of FITS TNULLn keyword if any */ double nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ double *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Unquantize short integer values into the scaled floating point values */ { long ii; int nextrand, iseed; if (!fits_rand_value) if (fits_init_randoms()) return(MEMORY_ALLOCATION); /* initialize the index to the next random number in the list */ iseed = (int) ((row - 1) % N_RANDOM); nextrand = (int) (fits_rand_value[iseed] * 500); if (nullcheck == 0) /* no null checking required */ { for (ii = 0; ii < ntodo; ii++) { /* if (dither_method == SUBTRACTIVE_DITHER_2 && input[ii] == ZERO_VALUE) output[ii] = 0.0; else */ output[ii] = (double) (((double) input[ii] - fits_rand_value[nextrand] + 0.5) * scale + zero); nextrand++; if (nextrand == N_RANDOM) { iseed++; if (iseed == N_RANDOM) iseed = 0; nextrand = (int) (fits_rand_value[iseed] * 500); } } } else /* must check for null values */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { /* if (dither_method == SUBTRACTIVE_DITHER_2 && input[ii] == ZERO_VALUE) output[ii] = 0.0; else */ output[ii] = (double) (((double) input[ii] - fits_rand_value[nextrand] + 0.5) * scale + zero); } nextrand++; if (nextrand == N_RANDOM) { iseed++; if (iseed == N_RANDOM) iseed = 0; nextrand = (int) (fits_rand_value[iseed] * 500); } } } return(*status); } /*--------------------------------------------------------------------------*/ static int unquantize_i4r8(long row, /* tile number = row number in table */ INT32BIT *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int dither_method, /* I - dithering method to use */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ INT32BIT tnull, /* I - value of FITS TNULLn keyword if any */ double nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ double *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Unquantize int integer values into the scaled floating point values */ { long ii; int nextrand, iseed; if (fits_rand_value == 0) if (fits_init_randoms()) return(MEMORY_ALLOCATION); /* initialize the index to the next random number in the list */ iseed = (int) ((row - 1) % N_RANDOM); nextrand = (int) (fits_rand_value[iseed] * 500); if (nullcheck == 0) /* no null checking required */ { for (ii = 0; ii < ntodo; ii++) { if (dither_method == SUBTRACTIVE_DITHER_2 && input[ii] == ZERO_VALUE) output[ii] = 0.0; else output[ii] = (double) (((double) input[ii] - fits_rand_value[nextrand] + 0.5) * scale + zero); nextrand++; if (nextrand == N_RANDOM) { iseed++; if (iseed == N_RANDOM) iseed = 0; nextrand = (int) (fits_rand_value[iseed] * 500); } } } else /* must check for null values */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { if (dither_method == SUBTRACTIVE_DITHER_2 && input[ii] == ZERO_VALUE) output[ii] = 0.0; else output[ii] = (double) (((double) input[ii] - fits_rand_value[nextrand] + 0.5) * scale + zero); } nextrand++; if (nextrand == N_RANDOM) { iseed++; if (iseed == N_RANDOM) iseed = 0; nextrand = (int) (fits_rand_value[iseed] * 500); } } } return(*status); } /*--------------------------------------------------------------------------*/ static int imcomp_float2nan(float *indata, long tilelen, int *outdata, float nullflagval, int *status) /* convert pixels that are equal to nullflag to NaNs. Note that indata and outdata point to the same location. */ { int ii; for (ii = 0; ii < tilelen; ii++) { if (indata[ii] == nullflagval) outdata[ii] = -1; /* integer -1 has the same bit pattern as a real*4 NaN */ } return(*status); } /*--------------------------------------------------------------------------*/ static int imcomp_double2nan(double *indata, long tilelen, LONGLONG *outdata, double nullflagval, int *status) /* convert pixels that are equal to nullflag to NaNs. Note that indata and outdata point to the same location. */ { int ii; for (ii = 0; ii < tilelen; ii++) { if (indata[ii] == nullflagval) outdata[ii] = -1; /* integer -1 has the same bit pattern as a real*8 NaN */ } return(*status); } /* ======================================================================= */ /* TABLE COMPRESSION ROUTINES */ /* =-====================================================================== */ /*--------------------------------------------------------------------------*/ int fits_compress_table(fitsfile *infptr, fitsfile *outfptr, int *status) /* Compress the input FITS Binary Table. First divide the table into equal sized chunks (analogous to image tiles) where all the contain the same number of rows (except perhaps for the last chunk which may contain fewer rows). The chunks should not be too large to copy into memory (currently, about 100 MB max seems a reasonable size). Then, on a chunk by piece basis, do the following: 1. Transpose the table from its original row-major order, into column-major order. All the bytes for each column are then continuous. In addition, the bytes within each table element may be shuffled so that the most significant byte of every element occurs first in the array, followed by the next most significant byte, and so on to the least significant byte. Byte shuffling often improves the gzip compression of floating-point arrays. 2. Compress the contiguous array of bytes in each column using the specified compression method. If no method is specifed, then a default method for that data type is chosen. 3. Store the compressed stream of bytes into a column that has the same name as in the input table, but which has a variable-length array data type (1QB). The output table will contain one row for each piece of the original table. 4. If the input table contain variable-length arrays, then each VLA is compressed individually, and written to the heap in the output table. Note that the output table will contain 2 sets of pointers for each VLA column. The first set contains the pointers to the uncompressed VLAs from the input table and the second is the set of pointers to the compressed VLAs in the output table. The latter set of pointers is used to reconstruct table when it is uncompressed, so that the heap has exactly the same structure as in the original file. The 2 sets of pointers are concatinated together, compressed with gzip, and written to the output table. When reading the compressed table, the only VLA that is directly visible is this compressed array of descriptors. One has to uncompress this array to be able to to read all the descriptors to the individual VLAs in the column. */ { long maxchunksize = 10000000; /* default value for the size of each chunk of the table */ char *cm_buffer; /* memory buffer for the transposed, Column-Major, chunk of the table */ LONGLONG cm_colstart[1000]; /* starting offset of each column in the cm_buffer */ LONGLONG rm_repeat[1000]; /* repeat count of each column in the input row-major table */ LONGLONG rm_colwidth[999]; /* width in bytes of each column in the input row-major table */ LONGLONG cm_repeat[999]; /* total number of elements in each column of the transposed column-major table */ int coltype[999]; /* data type code for each column */ int compalgor[999], default_algor = 0; /* compression algorithm to be applied to each column */ float cratio[999]; /* compression ratio for each column (for diagnostic purposes) */ float compressed_size, uncompressed_size, tot_compressed_size, tot_uncompressed_size; LONGLONG nrows, firstrow; LONGLONG headstart, datastart, dataend, startbyte, jj, kk, naxis1; LONGLONG vlalen, vlamemlen, vlastart, bytepos; long repeat, width, nchunks, rowspertile, lastrows; int ii, ll, ncols, hdutype, ltrue = 1, print_report = 0, tstatus; char *cptr, keyname[9], tform[40], *cdescript; char comm[FLEN_COMMENT], keyvalue[FLEN_VALUE], *cvlamem, tempstring[FLEN_VALUE], card[FLEN_CARD]; LONGLONG *descriptors, *outdescript, *vlamem; int *pdescriptors; size_t dlen, datasize, compmemlen; /* ================================================================================== */ /* perform initial sanity checks */ /* ================================================================================== */ /* special input flag value that means print out diagnostics */ if (*status == -999) { print_report = 1; *status = 0; } if (*status > 0) return(*status); fits_get_hdu_type(infptr, &hdutype, status); if (hdutype != BINARY_TBL) { *status = NOT_BTABLE; return(*status); } if (infptr == outfptr) { ffpmsg("Cannot compress table 'in place' (fits_compress_table)"); ffpmsg(" outfptr cannot be the same as infptr."); *status = DATA_COMPRESSION_ERR; return(*status); } /* get dimensions of the table */ fits_get_num_rowsll(infptr, &nrows, status); fits_get_num_cols(infptr, &ncols, status); fits_read_key(infptr, TLONGLONG, "NAXIS1", &naxis1, NULL, status); /* get offset to the start of the data and total size of the table (including the heap) */ fits_get_hduaddrll(infptr, &headstart, &datastart, &dataend, status); if (*status > 0) return(*status); tstatus = 0; if (!fits_read_key(infptr, TSTRING, "FZALGOR", tempstring, NULL, &tstatus)) { if (!strcasecmp(tempstring, "NONE")) { default_algor = NOCOMPRESS; } else if (!strcasecmp(tempstring, "GZIP") || !strcasecmp(tempstring, "GZIP_1")) { default_algor = GZIP_1; } else if (!strcasecmp(tempstring, "GZIP_2")) { default_algor = GZIP_2; } else if (!strcasecmp(tempstring, "RICE_1")) { default_algor = RICE_1; } else { ffpmsg("FZALGOR specifies unsupported table compression algorithm:"); ffpmsg(tempstring); *status = DATA_COMPRESSION_ERR; return(*status); } } /* just copy the HDU verbatim if the table has 0 columns or rows or if the table */ /* is less than 5760 bytes (2 blocks) in size, or compression directive keyword = "NONE" */ if (nrows < 1 || ncols < 1 || (dataend - datastart) < 5760 || default_algor == NOCOMPRESS) { fits_copy_hdu (infptr, outfptr, 0, status); return(*status); } /* Check if the chunk size has been specified with the FZTILELN keyword. */ /* If not, calculate a default number of rows per chunck, */ tstatus = 0; if (fits_read_key(infptr, TLONG, "FZTILELN", &rowspertile, NULL, &tstatus)) { rowspertile = (long) (maxchunksize / naxis1); } if (rowspertile < 1) rowspertile = 1; if (rowspertile > nrows) rowspertile = (long) nrows; nchunks = (long) ((nrows - 1) / rowspertile + 1); /* total number of chunks */ lastrows = (long) (nrows - ((nchunks - 1) * rowspertile)); /* number of rows in last chunk */ /* allocate space for the transposed, column-major chunk of the table */ cm_buffer = calloc((size_t) naxis1, (size_t) rowspertile); if (!cm_buffer) { ffpmsg("Could not allocate cm_buffer for transposed table"); *status = MEMORY_ALLOCATION; return(*status); } /* ================================================================================== */ /* Construct the header of the output compressed table */ /* ================================================================================== */ fits_copy_header(infptr, outfptr, status); /* start with verbatim copy of the input header */ fits_write_key(outfptr, TLOGICAL, "ZTABLE", <rue, "this is a compressed table", status); fits_write_key(outfptr, TLONGLONG, "ZTILELEN", &rowspertile, "number of rows in each tile", status); fits_read_card(outfptr, "NAXIS1", card, status); /* copy NAXIS1 to ZNAXIS1 */ strncpy(card, "ZNAXIS1", 7); fits_write_record(outfptr, card, status); fits_read_card(outfptr, "NAXIS2", card, status); /* copy NAXIS2 to ZNAXIS2 */ strncpy(card, "ZNAXIS2", 7); fits_write_record(outfptr, card, status); fits_read_card(outfptr, "PCOUNT", card, status); /* copy PCOUNT to ZPCOUNT */ strncpy(card, "ZPCOUNT", 7); fits_write_record(outfptr, card, status); fits_modify_key_lng(outfptr, "NAXIS2", nchunks, "&", status); /* 1 row per chunk */ fits_modify_key_lng(outfptr, "NAXIS1", ncols * 16, "&", status); /* 16 bytes for each 1QB column */ fits_modify_key_lng(outfptr, "PCOUNT", 0L, "&", status); /* reset PCOUNT to 0 */ /* rename the Checksum keywords, if they exist */ tstatus = 0; fits_modify_name(outfptr, "CHECKSUM", "ZHECKSUM", &tstatus); tstatus = 0; fits_modify_name(outfptr, "DATASUM", "ZDATASUM", &tstatus); /* ================================================================================== */ /* Now loop over each column of the input table: write the column-specific keywords */ /* and determine which compression algorithm to use. */ /* Also calculate various offsets to the start of the column data in both the */ /* original row-major table and in the transposed column-major form of the table. */ /* ================================================================================== */ cm_colstart[0] = 0; for (ii = 0; ii < ncols; ii++) { /* get the structural parameters of the original uncompressed column */ fits_make_keyn("TFORM", ii+1, keyname, status); fits_read_key(outfptr, TSTRING, keyname, tform, comm, status); fits_binary_tform(tform, coltype+ii, &repeat, &width, status); /* get the repeat count and the width */ /* preserve the original TFORM value and comment string in a ZFORMn keyword */ fits_read_card(outfptr, keyname, card, status); card[0] = 'Z'; fits_write_record(outfptr, card, status); /* All columns in the compressed table will have a variable-length array type. */ fits_modify_key_str(outfptr, keyname, "1QB", "&", status); /* Use 'Q' pointers (64-bit) */ /* deal with special cases: bit, string, and variable length array columns */ if (coltype[ii] == TBIT) { repeat = (repeat + 7) / 8; /* convert from bits to equivalent number of bytes */ } else if (coltype[ii] == TSTRING) { width = 1; /* ignore the optional 'w' in 'rAw' format */ } else if (coltype[ii] < 0) { /* pointer to variable length array */ if (strchr(tform,'Q') ) { width = 16; /* 'Q' descriptor has 64-bit pointers */ } else { width = 8; /* 'P' descriptor has 32-bit pointers */ } repeat = 1; } rm_repeat[ii] = repeat; rm_colwidth[ii] = repeat * width; /* column width (in bytes)in the input table */ /* starting offset of each field in the OUTPUT transposed column-major table */ cm_colstart[ii + 1] = cm_colstart[ii] + rm_colwidth[ii] * rowspertile; /* total number of elements in each column of the transposed column-major table */ cm_repeat[ii] = rm_repeat[ii] * rowspertile; compalgor[ii] = default_algor; /* initialize the column compression algorithm to the default */ /* check if a compression method has been specified for this column */ fits_make_keyn("FZALG", ii+1, keyname, status); tstatus = 0; if (!fits_read_key(outfptr, TSTRING, keyname, tempstring, NULL, &tstatus)) { if (!strcasecmp(tempstring, "GZIP") || !strcasecmp(tempstring, "GZIP_1")) { compalgor[ii] = GZIP_1; } else if (!strcasecmp(tempstring, "GZIP_2")) { compalgor[ii] = GZIP_2; } else if (!strcasecmp(tempstring, "RICE_1")) { compalgor[ii] = RICE_1; } else { ffpmsg("Unsupported table compression algorithm specification."); ffpmsg(keyname); ffpmsg(tempstring); *status = DATA_COMPRESSION_ERR; free(cm_buffer); return(*status); } } /* do sanity check of the requested algorithm and override if necessary */ if ( abs(coltype[ii]) == TLOGICAL || abs(coltype[ii]) == TBIT || abs(coltype[ii]) == TSTRING) { if (compalgor[ii] != GZIP_1) { compalgor[ii] = GZIP_1; } } else if ( abs(coltype[ii]) == TCOMPLEX || abs(coltype[ii]) == TDBLCOMPLEX || abs(coltype[ii]) == TFLOAT || abs(coltype[ii]) == TDOUBLE || abs(coltype[ii]) == TLONGLONG ) { if (compalgor[ii] != GZIP_1 && compalgor[ii] != GZIP_2) { compalgor[ii] = GZIP_2; /* gzip_2 usually works better gzip_1 */ } } else if ( abs(coltype[ii]) == TSHORT ) { if (compalgor[ii] != GZIP_1 && compalgor[ii] != GZIP_2 && compalgor[ii] != RICE_1) { compalgor[ii] = GZIP_2; /* gzip_2 usually works better rice_1 */ } } else if ( abs(coltype[ii]) == TLONG ) { if (compalgor[ii] != GZIP_1 && compalgor[ii] != GZIP_2 && compalgor[ii] != RICE_1) { compalgor[ii] = RICE_1; } } else if ( abs(coltype[ii]) == TBYTE ) { if (compalgor[ii] != GZIP_1 && compalgor[ii] != RICE_1 ) { compalgor[ii] = GZIP_1; } } } /* end of loop over columns */ /* ================================================================================== */ /* now process each chunk of the table, in turn */ /* ================================================================================== */ tot_uncompressed_size = 0.; tot_compressed_size = 0; firstrow = 1; for (ll = 0; ll < nchunks; ll++) { if (ll == nchunks - 1) { /* the last chunk may have fewer rows */ rowspertile = lastrows; for (ii = 0; ii < ncols; ii++) { cm_colstart[ii + 1] = cm_colstart[ii] + (rm_colwidth[ii] * rowspertile); cm_repeat[ii] = rm_repeat[ii] * rowspertile; } } /* move to the start of the chunk in the input table */ ffmbyt(infptr, datastart, 0, status); /* ================================================================================*/ /* First, transpose this chunck from row-major order to column-major order */ /* At the same time, shuffle the bytes in each datum, if doing GZIP_2 compression */ /* ================================================================================*/ for (jj = 0; jj < rowspertile; jj++) { /* loop over rows */ for (ii = 0; ii < ncols; ii++) { /* loop over columns */ if (rm_repeat[ii] > 0) { /* skip virtual columns that have 0 elements */ kk = 0; /* if the GZIP_2 compression algorithm is used, shuffle the bytes */ if (coltype[ii] == TSHORT && compalgor[ii] == GZIP_2) { while(kk < rm_colwidth[ii]) { cptr = cm_buffer + (cm_colstart[ii] + (jj * rm_repeat[ii]) + kk/2); ffgbyt(infptr, 1, cptr, status); /* get 1st byte */ cptr += cm_repeat[ii]; ffgbyt(infptr, 1, cptr, status); /* get 2nd byte */ kk += 2; } } else if ((coltype[ii] == TFLOAT || coltype[ii] == TLONG) && compalgor[ii] == GZIP_2) { while(kk < rm_colwidth[ii]) { cptr = cm_buffer + (cm_colstart[ii] + (jj * rm_repeat[ii]) + kk/4); ffgbyt(infptr, 1, cptr, status); /* get 1st byte */ cptr += cm_repeat[ii]; ffgbyt(infptr, 1, cptr, status); /* get 2nd byte */ cptr += cm_repeat[ii]; ffgbyt(infptr, 1, cptr, status); /* get 3rd byte */ cptr += cm_repeat[ii]; ffgbyt(infptr, 1, cptr, status); /* get 4th byte */ kk += 4; } } else if ( (coltype[ii] == TDOUBLE || coltype[ii] == TLONGLONG) && compalgor[ii] == GZIP_2) { while(kk < rm_colwidth[ii]) { cptr = cm_buffer + (cm_colstart[ii] + (jj * rm_repeat[ii]) + kk/8); ffgbyt(infptr, 1, cptr, status); /* get 1st byte */ cptr += cm_repeat[ii]; ffgbyt(infptr, 1, cptr, status); /* get 2nd byte */ cptr += cm_repeat[ii]; ffgbyt(infptr, 1, cptr, status); /* get 3rd byte */ cptr += cm_repeat[ii]; ffgbyt(infptr, 1, cptr, status); /* get 4th byte */ cptr += cm_repeat[ii]; ffgbyt(infptr, 1, cptr, status); /* get 5th byte */ cptr += cm_repeat[ii]; ffgbyt(infptr, 1, cptr, status); /* get 6th byte */ cptr += cm_repeat[ii]; ffgbyt(infptr, 1, cptr, status); /* get 7th byte */ cptr += cm_repeat[ii]; ffgbyt(infptr, 1, cptr, status); /* get 8th byte */ kk += 8; } } else { /* all other cases: don't shuffle the bytes; simply transpose the column */ cptr = cm_buffer + (cm_colstart[ii] + (jj * rm_colwidth[ii])); /* addr to copy to */ startbyte = (infptr->Fptr)->bytepos; /* save the starting byte location */ ffgbyt(infptr, rm_colwidth[ii], cptr, status); /* copy all the bytes */ if (rm_colwidth[ii] >= MINDIRECT) { /* have to explicitly move to next byte */ ffmbyt(infptr, startbyte + rm_colwidth[ii], 0, status); } } /* end of test of coltypee */ } /* end of not virtual column */ } /* end of loop over columns */ } /* end of loop over rows */ /* ================================================================================*/ /* now compress each column in the transposed chunk of the table */ /* ================================================================================*/ fits_set_hdustruc(outfptr, status); /* initialize structures in the output table */ for (ii = 0; ii < ncols; ii++) { /* loop over columns */ /* initialize the diagnostic compression results string */ sprintf(results[ii],"%3d %3d %3d ", ii+1, coltype[ii], compalgor[ii]); cratio[ii] = 0; if (rm_repeat[ii] > 0) { /* skip virtual columns with zero width */ if (coltype[ii] < 0) { /* this is a variable length array (VLA) column */ /*=========================================================================*/ /* variable-length array columns are a complicated special case */ /*=========================================================================*/ /* allocate memory to hold all the VLA descriptors from the input table, plus */ /* room to hold the descriptors to the compressed VLAs in the output table */ /* In total, there will be 2 descriptors for each row in this chunk */ uncompressed_size = 0.; compressed_size = 0; datasize = (size_t) (cm_colstart[ii + 1] - cm_colstart[ii]); /* size of input descriptors */ cdescript = calloc(datasize + (rowspertile * 16), 1); /* room for both descriptors */ if (!cdescript) { ffpmsg("Could not allocate buffer for descriptors"); *status = MEMORY_ALLOCATION; free(cm_buffer); return(*status); } /* copy the input descriptors to this array */ memcpy(cdescript, &cm_buffer[cm_colstart[ii]], datasize); #if BYTESWAPPED /* byte-swap the integer values into the native machine representation */ if (rm_colwidth[ii] == 16) { ffswap8((double *) cdescript, rowspertile * 2); } else { ffswap4((int *) cdescript, rowspertile * 2); } #endif descriptors = (LONGLONG *) cdescript; /* use this for Q type descriptors */ pdescriptors = (int *) cdescript; /* use this instead for or P type descriptors */ /* pointer to the 2nd set of descriptors */ outdescript = (LONGLONG *) (cdescript + datasize); /* this is a LONGLONG pointer */ for (jj = 0; jj < rowspertile; jj++) { /* loop to compress each VLA in turn */ if (rm_colwidth[ii] == 16) { /* if Q pointers */ vlalen = descriptors[jj * 2]; vlastart = descriptors[(jj * 2) + 1]; } else { /* if P pointers */ vlalen = (LONGLONG) pdescriptors[jj * 2]; vlastart = (LONGLONG) pdescriptors[(jj * 2) + 1]; } if (vlalen > 0) { /* skip zero-length VLAs */ vlamemlen = vlalen * (int) (-coltype[ii] / 10); vlamem = (LONGLONG *) malloc((size_t) vlamemlen); /* memory for the input uncompressed VLA */ if (!vlamem) { ffpmsg("Could not allocate buffer for VLA"); *status = MEMORY_ALLOCATION; free(cdescript); free(cm_buffer); return(*status); } compmemlen = (size_t) (vlalen * ((LONGLONG) (-coltype[ii] / 10)) * 1.5); if (compmemlen < 100) compmemlen = 100; cvlamem = malloc(compmemlen); /* memory for the output compressed VLA */ if (!cvlamem) { ffpmsg("Could not allocate buffer for compressed data"); *status = MEMORY_ALLOCATION; free(vlamem); free(cdescript); free(cm_buffer); return(*status); } /* read the raw bytes directly from the heap, without any byte-swapping or null value detection */ bytepos = (infptr->Fptr)->datastart + (infptr->Fptr)->heapstart + vlastart; ffmbyt(infptr, bytepos, REPORT_EOF, status); ffgbyt(infptr, vlamemlen, vlamem, status); /* read the bytes */ uncompressed_size += vlamemlen; /* total size of the uncompressed VLAs */ tot_uncompressed_size += vlamemlen; /* total size of the uncompressed file */ /* compress the VLA with the appropriate algorithm */ if (compalgor[ii] == RICE_1) { if (-coltype[ii] == TSHORT) { #if BYTESWAPPED ffswap2((short *) (vlamem), (long) vlalen); #endif dlen = fits_rcomp_short ((short *)(vlamem), (int) vlalen, (unsigned char *) cvlamem, (int) compmemlen, 32); } else if (-coltype[ii] == TLONG) { #if BYTESWAPPED ffswap4((int *) (vlamem), (long) vlalen); #endif dlen = fits_rcomp ((int *)(vlamem), (int) vlalen, (unsigned char *) cvlamem, (int) compmemlen, 32); } else if (-coltype[ii] == TBYTE) { dlen = fits_rcomp_byte ((signed char *)(vlamem), (int) vlalen, (unsigned char *) cvlamem, (int) compmemlen, 32); } else { /* this should not happen */ ffpmsg(" Error: cannot compress this column type with the RICE algorthm"); free(vlamem); free(cdescript); free(cm_buffer); free(cvlamem); *status = DATA_COMPRESSION_ERR; return(*status); } } else if (compalgor[ii] == GZIP_1 || compalgor[ii] == GZIP_2){ if (compalgor[ii] == GZIP_2 ) { /* shuffle the bytes before gzipping them */ if ( (int) (-coltype[ii] / 10) == 2) { fits_shuffle_2bytes((char *) vlamem, vlalen, status); } else if ( (int) (-coltype[ii] / 10) == 4) { fits_shuffle_4bytes((char *) vlamem, vlalen, status); } else if ( (int) (-coltype[ii] / 10) == 8) { fits_shuffle_8bytes((char *) vlamem, vlalen, status); } } /*: gzip compress the array of bytes */ compress2mem_from_mem( (char *) vlamem, (size_t) vlamemlen, &cvlamem, &compmemlen, realloc, &dlen, status); } else { /* this should not happen */ ffpmsg(" Error: unknown compression algorthm"); free(vlamem); free(cdescript); free(cm_buffer); free(cvlamem); *status = DATA_COMPRESSION_ERR; return(*status); } /* write the compressed array to the output table, but... */ /* We use a trick of always writing the array to the same row of the output table */ /* and then copy the descriptor into the array of descriptors that we allocated. */ /* First, reset the descriptor */ fits_write_descript(outfptr, ii+1, ll+1, 0, 0, status); /* write the compressed VLA if it is smaller than the original, else write */ /* the uncompressed array */ fits_set_tscale(outfptr, ii + 1, 1.0, 0.0, status); /* turn off any data scaling, first */ if (dlen < vlamemlen) { fits_write_col(outfptr, TBYTE, ii + 1, ll+1, 1, dlen, cvlamem, status); compressed_size += dlen; /* total size of the compressed VLAs */ tot_compressed_size += dlen; /* total size of the compressed file */ } else { if ( -coltype[ii] != TBYTE && compalgor[ii] != GZIP_1) { /* it is probably faster to reread the raw bytes, rather than unshuffle or unswap them */ bytepos = (infptr->Fptr)->datastart + (infptr->Fptr)->heapstart + vlastart; ffmbyt(infptr, bytepos, REPORT_EOF, status); ffgbyt(infptr, vlamemlen, vlamem, status); /* read the bytes */ } fits_write_col(outfptr, TBYTE, ii + 1, ll+1, 1, vlamemlen, vlamem, status); compressed_size += vlamemlen; /* total size of the compressed VLAs */ tot_compressed_size += vlamemlen; /* total size of the compressed file */ } /* read back the descriptor and save it in the array of descriptors */ fits_read_descriptll(outfptr, ii + 1, ll + 1, outdescript+(jj*2), outdescript+(jj*2)+1, status); free(cvlamem); free(vlamem); } /* end of vlalen > 0 */ } /* end of loop over rows */ if (compressed_size != 0) cratio[ii] = uncompressed_size / compressed_size; sprintf(tempstring," r=%6.2f",cratio[ii]); strcat(results[ii],tempstring); /* now we just have to compress the array of descriptors (both input and output) */ /* and write them to the output table. */ /* allocate memory for the compressed descriptors */ cvlamem = malloc(datasize + (rowspertile * 16) ); if (!cvlamem) { ffpmsg("Could not allocate buffer for compressed data"); *status = MEMORY_ALLOCATION; free(cdescript); free(cm_buffer); return(*status); } #if BYTESWAPPED /* byte swap the input and output descriptors */ if (rm_colwidth[ii] == 16) { ffswap8((double *) cdescript, rowspertile * 2); } else { ffswap4((int *) cdescript, rowspertile * 2); } ffswap8((double *) outdescript, rowspertile * 2); #endif /* compress the array contain both sets of descriptors */ compress2mem_from_mem((char *) cdescript, datasize + (rowspertile * 16), &cvlamem, &datasize, realloc, &dlen, status); free(cdescript); /* write the compressed descriptors to the output column */ fits_set_tscale(outfptr, ii + 1, 1.0, 0.0, status); /* turn off any data scaling, first */ fits_write_descript(outfptr, ii+1, ll+1, 0, 0, status); /* First, reset the descriptor */ fits_write_col(outfptr, TBYTE, ii + 1, ll+1, 1, dlen, cvlamem, status); free(cvlamem); if (ll == 0) { /* only write the ZCTYPn keyword once, while processing the first column */ fits_make_keyn("ZCTYP", ii+1, keyname, status); if (compalgor[ii] == RICE_1) { strcpy(keyvalue, "RICE_1"); } else if (compalgor[ii] == GZIP_2) { strcpy(keyvalue, "GZIP_2"); } else { strcpy(keyvalue, "GZIP_1"); } fits_write_key(outfptr, TSTRING, keyname, keyvalue, "compression algorithm for column", status); } continue; /* jump to end of loop, to go to next column */ } /* end of VLA case */ /* ================================================================================*/ /* deal with all the normal fixed-length columns here */ /* ================================================================================*/ /* allocate memory for the compressed data */ datasize = (size_t) (cm_colstart[ii + 1] - cm_colstart[ii]); cvlamem = malloc(datasize*2); tot_uncompressed_size += datasize; if (!cvlamem) { ffpmsg("Could not allocate buffer for compressed data"); *status = MEMORY_ALLOCATION; free(cm_buffer); return(*status); } if (compalgor[ii] == RICE_1) { if (coltype[ii] == TSHORT) { #if BYTESWAPPED ffswap2((short *) (cm_buffer + cm_colstart[ii]), datasize / 2); #endif dlen = fits_rcomp_short ((short *)(cm_buffer + cm_colstart[ii]), datasize / 2, (unsigned char *) cvlamem, datasize * 2, 32); } else if (coltype[ii] == TLONG) { #if BYTESWAPPED ffswap4((int *) (cm_buffer + cm_colstart[ii]), datasize / 4); #endif dlen = fits_rcomp ((int *)(cm_buffer + cm_colstart[ii]), datasize / 4, (unsigned char *) cvlamem, datasize * 2, 32); } else if (coltype[ii] == TBYTE) { dlen = fits_rcomp_byte ((signed char *)(cm_buffer + cm_colstart[ii]), datasize, (unsigned char *) cvlamem, datasize * 2, 32); } else { /* this should not happen */ ffpmsg(" Error: cannot compress this column type with the RICE algorthm"); free(cvlamem); free(cm_buffer); *status = DATA_COMPRESSION_ERR; return(*status); } } else { /* all other cases: gzip compress the column (bytes may have been shuffled previously) */ compress2mem_from_mem(cm_buffer + cm_colstart[ii], datasize, &cvlamem, &datasize, realloc, &dlen, status); } if (ll == 0) { /* only write the ZCTYPn keyword once, while processing the first column */ fits_make_keyn("ZCTYP", ii+1, keyname, status); if (compalgor[ii] == RICE_1) { strcpy(keyvalue, "RICE_1"); } else if (compalgor[ii] == GZIP_2) { strcpy(keyvalue, "GZIP_2"); } else { strcpy(keyvalue, "GZIP_1"); } fits_write_key(outfptr, TSTRING, keyname, keyvalue, "compression algorithm for column", status); } /* write the compressed data to the output column */ fits_set_tscale(outfptr, ii + 1, 1.0, 0.0, status); /* turn off any data scaling, first */ fits_write_col(outfptr, TBYTE, ii + 1, ll+1, 1, dlen, cvlamem, status); tot_compressed_size += dlen; free(cvlamem); /* don't need the compressed data any more */ /* create diagnostic messages */ if (dlen != 0) cratio[ii] = (float) datasize / (float) dlen; /* compression ratio of the column */ sprintf(tempstring," r=%6.2f",cratio[ii]); strcat(results[ii],tempstring); } /* end of not a virtual column */ } /* end of loop over columns */ datastart += (rowspertile * naxis1); /* increment to start of next chunk */ firstrow += rowspertile; /* increment first row in next chunk */ if (print_report) { printf("\nChunk = %d\n",ll+1); for (ii = 0; ii < ncols; ii++) { printf("%s\n", results[ii]); } } } /* end of loop over chunks of the table */ /* =================================================================================*/ /* all done; just clean up and return */ /* ================================================================================*/ free(cm_buffer); fits_set_hdustruc(outfptr, status); /* reset internal structures */ if (print_report) { if (tot_compressed_size != 0) printf("\nTotal data size (MB) %.3f -> %.3f, ratio = %.3f\n", tot_uncompressed_size/1000000., tot_compressed_size/1000000., tot_uncompressed_size/tot_compressed_size); } return(*status); } /*--------------------------------------------------------------------------*/ int fits_uncompress_table(fitsfile *infptr, fitsfile *outfptr, int *status) /* Uncompress the table that was compressed with fits_compress_table */ { char colcode[999]; /* column data type code character */ char coltype[999]; /* column data type numeric code value */ char *cm_buffer; /* memory buffer for the transposed, Column-Major, chunk of the table */ char *rm_buffer; /* memory buffer for the original, Row-Major, chunk of the table */ LONGLONG nrows, rmajor_colwidth[999], rmajor_colstart[1000], cmajor_colstart[1000]; LONGLONG cmajor_repeat[999], rmajor_repeat[999], cmajor_bytespan[999], kk; LONGLONG headstart, datastart = 0, dataend, rowsremain, *descript, *qdescript = 0; LONGLONG rowstart, cvlalen, cvlastart, vlalen, vlastart; long repeat, width, vla_repeat, vla_address, rowspertile, ntile; int ncols, hdutype, inttype, anynull, tstatus, zctype[999], addspace = 0, *pdescript = 0; char *cptr, keyname[9], tform[40]; long pcount, zheapptr, naxis1, naxis2, ii, jj; char *ptr, comm[FLEN_COMMENT], zvalue[FLEN_VALUE], *uncompressed_vla = 0, *compressed_vla; char card[FLEN_CARD]; size_t dlen, fullsize, cm_size, bytepos, vlamemlen; /* ================================================================================== */ /* perform initial sanity checks */ /* ================================================================================== */ if (*status > 0) return(*status); fits_get_hdu_type(infptr, &hdutype, status); if (hdutype != BINARY_TBL) { ffpmsg("This is not a binary table, so cannot uncompress it!"); *status = NOT_BTABLE; return(*status); } if (fits_read_key(infptr, TLOGICAL, "ZTABLE", &tstatus, NULL, status)) { /* just copy the HDU if the table is not compressed */ if (infptr != outfptr) { fits_copy_hdu (infptr, outfptr, 0, status); } return(*status); } fits_get_num_rowsll(infptr, &nrows, status); fits_get_num_cols(infptr, &ncols, status); if ((ncols < 1)) { /* just copy the HDU if the table does not have more than 0 columns */ if (infptr != outfptr) { fits_copy_hdu (infptr, outfptr, 0, status); } return(*status); } fits_read_key(infptr, TLONG, "ZTILELEN", &rowspertile, comm, status); if (*status > 0) { ffpmsg("Could not find the required ZTILELEN keyword"); *status = DATA_DECOMPRESSION_ERR; return(*status); } /**** get size of the uncompressed table */ fits_read_key(infptr, TLONG, "ZNAXIS1", &naxis1, comm, status); if (*status > 0) { ffpmsg("Could not find the required ZNAXIS1 keyword"); *status = DATA_DECOMPRESSION_ERR; return(*status); } fits_read_key(infptr, TLONG, "ZNAXIS2", &naxis2, comm, status); if (*status > 0) { ffpmsg("Could not find the required ZNAXIS2 keyword"); *status = DATA_DECOMPRESSION_ERR; return(*status); } fits_read_key(infptr, TLONG, "ZPCOUNT", &pcount, comm, status); if (*status > 0) { ffpmsg("Could not find the required ZPCOUNT keyword"); *status = DATA_DECOMPRESSION_ERR; return(*status); } tstatus = 0; fits_read_key(infptr, TLONG, "ZHEAPPTR", &zheapptr, comm, &tstatus); if (tstatus > 0) { zheapptr = 0; /* uncompressed table has no heap */ } /* ================================================================================== */ /* copy of the input header, then recreate the uncompressed table keywords */ /* ================================================================================== */ fits_copy_header(infptr, outfptr, status); /* reset the NAXIS1, NAXIS2. and PCOUNT keywords to the original */ fits_read_card(outfptr, "ZNAXIS1", card, status); strncpy(card, "NAXIS1 ", 7); fits_update_card(outfptr, "NAXIS1", card, status); fits_read_card(outfptr, "ZNAXIS2", card, status); strncpy(card, "NAXIS2 ", 7); fits_update_card(outfptr, "NAXIS2", card, status); fits_read_card(outfptr, "ZPCOUNT", card, status); strncpy(card, "PCOUNT ", 7); fits_update_card(outfptr, "PCOUNT", card, status); fits_delete_key(outfptr, "ZTABLE", status); fits_delete_key(outfptr, "ZTILELEN", status); fits_delete_key(outfptr, "ZNAXIS1", status); fits_delete_key(outfptr, "ZNAXIS2", status); fits_delete_key(outfptr, "ZPCOUNT", status); tstatus = 0; fits_delete_key(outfptr, "CHECKSUM", &tstatus); tstatus = 0; fits_delete_key(outfptr, "DATASUM", &tstatus); /* restore the Checksum keywords, if they exist */ tstatus = 0; fits_modify_name(outfptr, "ZHECKSUM", "CHECKSUM", &tstatus); tstatus = 0; fits_modify_name(outfptr, "ZDATASUM", "DATASUM", &tstatus); /* ================================================================================== */ /* determine compression paramters for each column and write column-specific keywords */ /* ================================================================================== */ for (ii = 0; ii < ncols; ii++) { /* get the original column type, repeat count, and unit width */ fits_make_keyn("ZFORM", ii+1, keyname, status); fits_read_key(infptr, TSTRING, keyname, tform, comm, status); /* restore the original TFORM value and comment */ fits_read_card(outfptr, keyname, card, status); card[0] = 'T'; keyname[0] = 'T'; fits_update_card(outfptr, keyname, card, status); /* now delete the ZFORM keyword */ keyname[0] = 'Z'; fits_delete_key(outfptr, keyname, status); cptr = tform; while(isdigit(*cptr)) cptr++; colcode[ii] = *cptr; /* save the column type code */ fits_binary_tform(tform, &inttype, &repeat, &width, status); coltype[ii] = inttype; /* deal with special cases */ if (abs(coltype[ii]) == TBIT) { repeat = (repeat + 7) / 8 ; /* convert from bits to bytes */ } else if (abs(coltype[ii]) == TSTRING) { width = 1; } else if (coltype[ii] < 0) { /* pointer to variable length array */ if (colcode[ii] == 'P') width = 8; /* this is a 'P' column */ else width = 16; /* this is a 'Q' not a 'P' column */ addspace += 16; /* need space for a second set of Q pointers for this column */ } rmajor_repeat[ii] = repeat; /* width (in bytes) of each field in the row-major table */ rmajor_colwidth[ii] = rmajor_repeat[ii] * width; /* construct the ZCTYPn keyword name then read the keyword */ fits_make_keyn("ZCTYP", ii+1, keyname, status); tstatus = 0; fits_read_key(infptr, TSTRING, keyname, zvalue, NULL, &tstatus); if (tstatus) { zctype[ii] = GZIP_2; } else { if (!strcmp(zvalue, "GZIP_2")) { zctype[ii] = GZIP_2; } else if (!strcmp(zvalue, "GZIP_1")) { zctype[ii] = GZIP_1; } else if (!strcmp(zvalue, "RICE_1")) { zctype[ii] = RICE_1; } else { ffpmsg("Unrecognized ZCTYPn keyword compression code:"); ffpmsg(zvalue); *status = DATA_DECOMPRESSION_ERR; return(*status); } /* delete this keyword from the uncompressed header */ fits_delete_key(outfptr, keyname, status); } } /* rescan header keywords to reset internal table structure parameters */ fits_set_hdustruc(outfptr, status); /* ================================================================================== */ /* allocate memory for the transposed and untransposed tile of the table */ /* ================================================================================== */ fullsize = naxis1 * rowspertile; cm_size = fullsize + (addspace * rowspertile); cm_buffer = malloc(cm_size); if (!cm_buffer) { ffpmsg("Could not allocate buffer for transformed column-major table"); *status = MEMORY_ALLOCATION; return(*status); } rm_buffer = malloc(fullsize); if (!rm_buffer) { ffpmsg("Could not allocate buffer for untransformed row-major table"); *status = MEMORY_ALLOCATION; free(cm_buffer); return(*status); } /* ================================================================================== */ /* Main loop over all the tiles */ /* ================================================================================== */ rowsremain = naxis2; rowstart = 1; ntile = 0; while(rowsremain) { /* ================================================================================== */ /* loop over each column: read and uncompress the bytes */ /* ================================================================================== */ ntile++; rmajor_colstart[0] = 0; cmajor_colstart[0] = 0; for (ii = 0; ii < ncols; ii++) { cmajor_repeat[ii] = rmajor_repeat[ii] * rowspertile; /* starting offset of each field in the column-major table */ if (coltype[ii] > 0) { /* normal fixed length column */ cmajor_colstart[ii + 1] = cmajor_colstart[ii] + rmajor_colwidth[ii] * rowspertile; } else { /* VLA column: reserve space for the 2nd set of Q pointers */ cmajor_colstart[ii + 1] = cmajor_colstart[ii] + (rmajor_colwidth[ii] + 16) * rowspertile; } /* length of each sequence of bytes, after sorting them in signicant order */ cmajor_bytespan[ii] = (rmajor_repeat[ii] * rowspertile); /* starting offset of each field in the row-major table */ rmajor_colstart[ii + 1] = rmajor_colstart[ii] + rmajor_colwidth[ii]; if (rmajor_repeat[ii] > 0) { /* ignore columns with 0 elements */ /* read compressed bytes from input table */ fits_read_descript(infptr, ii + 1, ntile, &vla_repeat, &vla_address, status); /* allocate memory and read in the compressed bytes */ ptr = malloc(vla_repeat); if (!ptr) { ffpmsg("Could not allocate buffer for uncompressed bytes"); *status = MEMORY_ALLOCATION; free(rm_buffer); free(cm_buffer); return(*status); } fits_set_tscale(infptr, ii + 1, 1.0, 0.0, status); /* turn off any data scaling, first */ fits_read_col_byt(infptr, ii + 1, ntile, 1, vla_repeat, 0, (unsigned char *) ptr, &anynull, status); cptr = cm_buffer + cmajor_colstart[ii]; /* size in bytes of the uncompressed column of bytes */ fullsize = (size_t) (cmajor_colstart[ii+1] - cmajor_colstart[ii]); switch (colcode[ii]) { case 'I': if (zctype[ii] == RICE_1) { dlen = fits_rdecomp_short((unsigned char *)ptr, vla_repeat, (unsigned short *)cptr, fullsize / 2, 32); #if BYTESWAPPED ffswap2((short *) cptr, fullsize / 2); #endif } else { /* gunzip the data into the correct location */ uncompress2mem_from_mem(ptr, vla_repeat, &cptr, &fullsize, realloc, &dlen, status); } break; case 'J': if (zctype[ii] == RICE_1) { dlen = fits_rdecomp ((unsigned char *) ptr, vla_repeat, (unsigned int *)cptr, fullsize / 4, 32); #if BYTESWAPPED ffswap4((int *) cptr, fullsize / 4); #endif } else { /* gunzip the data into the correct location */ uncompress2mem_from_mem(ptr, vla_repeat, &cptr, &fullsize, realloc, &dlen, status); } break; case 'B': if (zctype[ii] == RICE_1) { dlen = fits_rdecomp_byte ((unsigned char *) ptr, vla_repeat, (unsigned char *)cptr, fullsize, 32); } else { /* gunzip the data into the correct location */ uncompress2mem_from_mem(ptr, vla_repeat, &cptr, &fullsize, realloc, &dlen, status); } break; default: /* all variable length array columns are included in this case */ /* gunzip the data into the correct location in the full table buffer */ uncompress2mem_from_mem(ptr, vla_repeat, &cptr, &fullsize, realloc, &dlen, status); } /* end of switch block */ free(ptr); } /* end of rmajor_repeat > 0 */ } /* end of loop over columns */ /* now transpose the rows and columns (from cm_buffer to rm_buffer) */ /* move each byte, in turn, from the cm_buffer to the appropriate place in the rm_buffer */ for (ii = 0; ii < ncols; ii++) { /* loop over columns */ ptr = (char *) (cm_buffer + cmajor_colstart[ii]); /* initialize ptr to start of the column in the cm_buffer */ if (rmajor_repeat[ii] > 0) { /* skip columns with zero elements */ if (coltype[ii] > 0) { /* normal fixed length array columns */ if ((zctype[ii] == GZIP_2)) { /* need to unshuffle the bytes */ /* recombine the byte planes for the 2-byte, 4-byte, and 8-byte numeric columns */ switch (colcode[ii]) { case 'I': /* get the 1st byte of each I*2 value */ for (jj = 0; jj < rowspertile; jj++) { /* loop over number of rows in the output table */ cptr = rm_buffer + (rmajor_colstart[ii] + (jj * rmajor_colstart[ncols])); for (kk = 0; kk < rmajor_repeat[ii]; kk++) { *cptr = *ptr; /* copy 1 byte */ ptr++; cptr += 2; } } /* get the 2nd byte of each I*2 value */ for (jj = 0; jj < rowspertile; jj++) { /* loop over number of rows in the output table */ cptr = rm_buffer + (rmajor_colstart[ii] + (jj * rmajor_colstart[ncols]) + 1); for (kk = 0; kk < rmajor_repeat[ii]; kk++) { *cptr = *ptr; /* copy 1 byte */ ptr++; cptr += 2; } } break; case 'J': case 'E': /* get the 1st byte of each 4-byte value */ for (jj = 0; jj < rowspertile; jj++) { /* loop over number of rows in the output table */ cptr = rm_buffer + (rmajor_colstart[ii] + (jj * rmajor_colstart[ncols])); for (kk = 0; kk < rmajor_repeat[ii]; kk++) { *cptr = *ptr; /* copy 1 byte */ ptr++; cptr += 4; } } /* get the 2nd byte */ for (jj = 0; jj < rowspertile; jj++) { /* loop over number of rows in the output table */ cptr = rm_buffer + (rmajor_colstart[ii] + (jj * rmajor_colstart[ncols]) + 1); for (kk = 0; kk < rmajor_repeat[ii]; kk++) { *cptr = *ptr; /* copy 1 byte */ ptr++; cptr += 4; } } /* get the 3rd byte */ for (jj = 0; jj < rowspertile; jj++) { /* loop over number of rows in the output table */ cptr = rm_buffer + (rmajor_colstart[ii] + (jj * rmajor_colstart[ncols]) + 2); for (kk = 0; kk < rmajor_repeat[ii]; kk++) { *cptr = *ptr; /* copy 1 byte */ ptr++; cptr += 4; } } /* get the 4th byte */ for (jj = 0; jj < rowspertile; jj++) { /* loop over number of rows in the output table */ cptr = rm_buffer + (rmajor_colstart[ii] + (jj * rmajor_colstart[ncols]) + 3); for (kk = 0; kk < rmajor_repeat[ii]; kk++) { *cptr = *ptr; /* copy 1 byte */ ptr++; cptr += 4; } } break; case 'D': case 'K': /* get the 1st byte of each 8-byte value */ for (jj = 0; jj < rowspertile; jj++) { /* loop over number of rows in the output table */ cptr = rm_buffer + (rmajor_colstart[ii] + (jj * rmajor_colstart[ncols])); for (kk = 0; kk < rmajor_repeat[ii]; kk++) { *cptr = *ptr; /* copy 1 byte */ ptr++; cptr += 8; } } /* get the 2nd byte */ for (jj = 0; jj < rowspertile; jj++) { /* loop over number of rows in the output table */ cptr = rm_buffer + (rmajor_colstart[ii] + (jj * rmajor_colstart[ncols]) + 1); for (kk = 0; kk < rmajor_repeat[ii]; kk++) { *cptr = *ptr; /* copy 1 byte */ ptr++; cptr += 8; } } /* get the 3rd byte */ for (jj = 0; jj < rowspertile; jj++) { /* loop over number of rows in the output table */ cptr = rm_buffer + (rmajor_colstart[ii] + (jj * rmajor_colstart[ncols]) + 2); for (kk = 0; kk < rmajor_repeat[ii]; kk++) { *cptr = *ptr; /* copy 1 byte */ ptr++; cptr += 8; } } /* get the 4th byte */ for (jj = 0; jj < rowspertile; jj++) { /* loop over number of rows in the output table */ cptr = rm_buffer + (rmajor_colstart[ii] + (jj * rmajor_colstart[ncols]) + 3); for (kk = 0; kk < rmajor_repeat[ii]; kk++) { *cptr = *ptr; /* copy 1 byte */ ptr++; cptr += 8; } } /* get the 5th byte */ for (jj = 0; jj < rowspertile; jj++) { /* loop over number of rows in the output table */ cptr = rm_buffer + (rmajor_colstart[ii] + (jj * rmajor_colstart[ncols]) + 4); for (kk = 0; kk < rmajor_repeat[ii]; kk++) { *cptr = *ptr; /* copy 1 byte */ ptr++; cptr += 8; } } /* get the 6th byte */ for (jj = 0; jj < rowspertile; jj++) { /* loop over number of rows in the output table */ cptr = rm_buffer + (rmajor_colstart[ii] + (jj * rmajor_colstart[ncols]) + 5); for (kk = 0; kk < rmajor_repeat[ii]; kk++) { *cptr = *ptr; /* copy 1 byte */ ptr++; cptr += 8; } } /* get the 7th byte */ for (jj = 0; jj < rowspertile; jj++) { /* loop over number of rows in the output table */ cptr = rm_buffer + (rmajor_colstart[ii] + (jj * rmajor_colstart[ncols]) + 6); for (kk = 0; kk < rmajor_repeat[ii]; kk++) { *cptr = *ptr; /* copy 1 byte */ ptr++; cptr += 8; } } /* get the 8th byte */ for (jj = 0; jj < rowspertile; jj++) { /* loop over number of rows in the output table */ cptr = rm_buffer + (rmajor_colstart[ii] + (jj * rmajor_colstart[ncols]) + 7); for (kk = 0; kk < rmajor_repeat[ii]; kk++) { *cptr = *ptr; /* copy 1 byte */ ptr++; cptr += 8; } } break; default: /* should never get here */ ffpmsg("Error: unexpected attempt to use GZIP_2 to compress a column unsuitable data type"); *status = DATA_DECOMPRESSION_ERR; free(rm_buffer); free(cm_buffer); return(*status); } /* end of switch for shuffling the bytes*/ } else { /* not GZIP_2, don't have to shuffle bytes, so just transpose the rows and columns */ for (jj = 0; jj < rowspertile; jj++) { /* loop over number of rows in the output table */ cptr = rm_buffer + (rmajor_colstart[ii] + jj * rmajor_colstart[ncols]); /* addr to copy to */ memcpy(cptr, ptr, (size_t) rmajor_colwidth[ii]); ptr += (rmajor_colwidth[ii]); } } } else { /* transpose the variable length array pointers */ for (jj = 0; jj < rowspertile; jj++) { /* loop over number of rows in the output uncompressed table */ cptr = rm_buffer + (rmajor_colstart[ii] + jj * rmajor_colstart[ncols]); /* addr to copy to */ memcpy(cptr, ptr, (size_t) rmajor_colwidth[ii]); ptr += (rmajor_colwidth[ii]); } if (rmajor_colwidth[ii] == 8 ) { /* these are P-type descriptors */ pdescript = (int *) (cm_buffer + cmajor_colstart[ii]); #if BYTESWAPPED ffswap4((int *) pdescript, rowspertile * 2); /* byte-swap the descriptor */ #endif } else if (rmajor_colwidth[ii] == 16 ) { /* these are Q-type descriptors */ qdescript = (LONGLONG *) (cm_buffer + cmajor_colstart[ii]); #if BYTESWAPPED ffswap8((double *) qdescript, rowspertile * 2); /* byte-swap the descriptor */ #endif } else { /* this should never happen */ ffpmsg("Error: Descriptor column is neither 8 nor 16 bytes wide"); free(rm_buffer); free(cm_buffer); *status = DATA_DECOMPRESSION_ERR; return(*status); } /* First, set pointer to the Q descriptors, and byte-swap them, if needed */ descript = (LONGLONG*) (cm_buffer + cmajor_colstart[ii] + (rmajor_colwidth[ii] * rowspertile)); #if BYTESWAPPED /* byte-swap the descriptor */ ffswap8((double *) descript, rowspertile * 2); #endif /* now uncompress all the individual VLAs, and */ /* write them to their original location in the uncompressed file */ for (jj = 0; jj < rowspertile; jj++) { /* loop over rows */ /* get the size and location of the compressed VLA in the compressed table */ cvlalen = descript[jj * 2]; cvlastart = descript[(jj * 2) + 1]; if (cvlalen > 0 ) { /* get the size and location to write the uncompressed VLA in the uncompressed table */ if (rmajor_colwidth[ii] == 8 ) { vlalen = pdescript[jj * 2]; vlastart = pdescript[(jj * 2) + 1]; } else { vlalen = qdescript[jj * 2]; vlastart = qdescript[(jj * 2) + 1]; } vlamemlen = (size_t) (vlalen * (-coltype[ii] / 10)); /* size of the uncompressed VLA, in bytes */ /* allocate memory for the compressed vla */ compressed_vla = malloc( (size_t) cvlalen); if (!compressed_vla) { ffpmsg("Could not allocate buffer for compressed VLA"); free(rm_buffer); free(cm_buffer); *status = MEMORY_ALLOCATION; return(*status); } /* read the compressed VLA from the heap in the input compressed table */ bytepos = (size_t) ((infptr->Fptr)->datastart + (infptr->Fptr)->heapstart + cvlastart); ffmbyt(infptr, bytepos, REPORT_EOF, status); ffgbyt(infptr, cvlalen, compressed_vla, status); /* read the bytes */ /* if the VLA couldn't be compressed, just copy it directly to the output uncompressed table */ if (cvlalen == vlamemlen ) { bytepos = (size_t) ((outfptr->Fptr)->datastart + (outfptr->Fptr)->heapstart + vlastart); ffmbyt(outfptr, bytepos, IGNORE_EOF, status); ffpbyt(outfptr, cvlalen, compressed_vla, status); /* write the bytes */ } else { /* uncompress the VLA */ /* allocate memory for the uncompressed VLA */ uncompressed_vla = malloc(vlamemlen); if (!uncompressed_vla) { ffpmsg("Could not allocate buffer for uncompressed VLA"); *status = MEMORY_ALLOCATION; free(compressed_vla); free(rm_buffer); free(cm_buffer); return(*status); } /* uncompress the VLA with the appropriate algorithm */ if (zctype[ii] == RICE_1) { if (-coltype[ii] == TSHORT) { dlen = fits_rdecomp_short((unsigned char *) compressed_vla, (int) cvlalen, (unsigned short *)uncompressed_vla, (int) vlalen, 32); #if BYTESWAPPED ffswap2((short *) uncompressed_vla, (long) vlalen); #endif } else if (-coltype[ii] == TLONG) { dlen = fits_rdecomp((unsigned char *) compressed_vla, (int) cvlalen, (unsigned int *)uncompressed_vla, (int) vlalen, 32); #if BYTESWAPPED ffswap4((int *) uncompressed_vla, (long) vlalen); #endif } else if (-coltype[ii] == TBYTE) { dlen = fits_rdecomp_byte((unsigned char *) compressed_vla, (int) cvlalen, (unsigned char *) uncompressed_vla, (int) vlalen, 32); } else { /* this should not happen */ ffpmsg(" Error: cannot uncompress this column type with the RICE algorthm"); *status = DATA_DECOMPRESSION_ERR; free(uncompressed_vla); free(compressed_vla); free(rm_buffer); free(cm_buffer); return(*status); } } else if (zctype[ii] == GZIP_1 || zctype[ii] == GZIP_2){ /*: gzip uncompress the array of bytes */ uncompress2mem_from_mem( compressed_vla, (size_t) cvlalen, &uncompressed_vla, &vlamemlen, realloc, &vlamemlen, status); if (zctype[ii] == GZIP_2 ) { /* unshuffle the bytes after ungzipping them */ if ( (int) (-coltype[ii] / 10) == 2) { fits_unshuffle_2bytes((char *) uncompressed_vla, vlalen, status); } else if ( (int) (-coltype[ii] / 10) == 4) { fits_unshuffle_4bytes((char *) uncompressed_vla, vlalen, status); } else if ( (int) (-coltype[ii] / 10) == 8) { fits_unshuffle_8bytes((char *) uncompressed_vla, vlalen, status); } } } else { /* this should not happen */ ffpmsg(" Error: unknown compression algorthm"); free(uncompressed_vla); free(compressed_vla); free(rm_buffer); free(cm_buffer); *status = DATA_COMPRESSION_ERR; return(*status); } bytepos = (size_t) ((outfptr->Fptr)->datastart + (outfptr->Fptr)->heapstart + vlastart); ffmbyt(outfptr, bytepos, IGNORE_EOF, status); ffpbyt(outfptr, vlamemlen, uncompressed_vla, status); /* write the bytes */ free(uncompressed_vla); } /* end of uncompress VLA */ free(compressed_vla); } /* end of vlalen > 0 */ } /* end of loop over rowspertile */ } /* end of variable length array section*/ } /* end of if column repeat > 0 */ } /* end of ncols loop */ /* copy the buffer of data to the output data unit */ if (datastart == 0) fits_get_hduaddrll(outfptr, &headstart, &datastart, &dataend, status); ffmbyt(outfptr, datastart, 1, status); ffpbyt(outfptr, naxis1 * rowspertile, rm_buffer, status); /* increment pointers for next tile */ rowstart += rowspertile; rowsremain -= rowspertile; datastart += (naxis1 * rowspertile); if (rowspertile > rowsremain) rowspertile = (long) rowsremain; } /* end of while rows still remain */ free(rm_buffer); free(cm_buffer); /* reset internal table structure parameters */ fits_set_hdustruc(outfptr, status); return(*status); } /*--------------------------------------------------------------------------*/ static int fits_shuffle_2bytes(char *heap, LONGLONG length, int *status) /* shuffle the bytes in an array of 2-byte integers in the heap */ { LONGLONG ii; char *ptr, *cptr, *heapptr; ptr = malloc((size_t) (length * 2)); heapptr = heap; cptr = ptr; for (ii = 0; ii < length; ii++) { *cptr = *heapptr; heapptr++; *(cptr + length) = *heapptr; heapptr++; cptr++; } memcpy(heap, ptr, (size_t) (length * 2)); free(ptr); return(*status); } /*--------------------------------------------------------------------------*/ static int fits_shuffle_4bytes(char *heap, LONGLONG length, int *status) /* shuffle the bytes in an array of 4-byte integers or floats */ { LONGLONG ii; char *ptr, *cptr, *heapptr; ptr = malloc((size_t) (length * 4)); if (!ptr) { ffpmsg("malloc failed\n"); return(*status); } heapptr = heap; cptr = ptr; for (ii = 0; ii < length; ii++) { *cptr = *heapptr; heapptr++; *(cptr + length) = *heapptr; heapptr++; *(cptr + (length * 2)) = *heapptr; heapptr++; *(cptr + (length * 3)) = *heapptr; heapptr++; cptr++; } memcpy(heap, ptr, (size_t) (length * 4)); free(ptr); return(*status); } /*--------------------------------------------------------------------------*/ static int fits_shuffle_8bytes(char *heap, LONGLONG length, int *status) /* shuffle the bytes in an array of 8-byte integers or doubles in the heap */ { LONGLONG ii; char *ptr, *cptr, *heapptr; ptr = calloc(1, (size_t) (length * 8)); heapptr = heap; /* for some bizarre reason this loop fails to compile under OpenSolaris using the proprietary SunStudioExpress C compiler; use the following equivalent loop instead. cptr = ptr; for (ii = 0; ii < length; ii++) { *cptr = *heapptr; heapptr++; *(cptr + length) = *heapptr; heapptr++; *(cptr + (length * 2)) = *heapptr; heapptr++; *(cptr + (length * 3)) = *heapptr; heapptr++; *(cptr + (length * 4)) = *heapptr; heapptr++; *(cptr + (length * 5)) = *heapptr; heapptr++; *(cptr + (length * 6)) = *heapptr; heapptr++; *(cptr + (length * 7)) = *heapptr; heapptr++; cptr++; } */ for (ii = 0; ii < length; ii++) { cptr = ptr + ii; *cptr = *heapptr; heapptr++; cptr += length; *cptr = *heapptr; heapptr++; cptr += length; *cptr = *heapptr; heapptr++; cptr += length; *cptr = *heapptr; heapptr++; cptr += length; *cptr = *heapptr; heapptr++; cptr += length; *cptr = *heapptr; heapptr++; cptr += length; *cptr = *heapptr; heapptr++; cptr += length; *cptr = *heapptr; heapptr++; } memcpy(heap, ptr, (size_t) (length * 8)); free(ptr); return(*status); } /*--------------------------------------------------------------------------*/ static int fits_unshuffle_2bytes(char *heap, LONGLONG length, int *status) /* unshuffle the bytes in an array of 2-byte integers */ { LONGLONG ii; char *ptr, *cptr, *heapptr; ptr = malloc((size_t) (length * 2)); heapptr = heap + (2 * length) - 1; cptr = ptr + (2 * length) - 1; for (ii = 0; ii < length; ii++) { *cptr = *heapptr; cptr--; *cptr = *(heapptr - length); cptr--; heapptr--; } memcpy(heap, ptr, (size_t) (length * 2)); free(ptr); return(*status); } /*--------------------------------------------------------------------------*/ static int fits_unshuffle_4bytes(char *heap, LONGLONG length, int *status) /* unshuffle the bytes in an array of 4-byte integers or floats */ { LONGLONG ii; char *ptr, *cptr, *heapptr; ptr = malloc((size_t) (length * 4)); heapptr = heap + (4 * length) -1; cptr = ptr + (4 * length) -1; for (ii = 0; ii < length; ii++) { *cptr = *heapptr; cptr--; *cptr = *(heapptr - length); cptr--; *cptr = *(heapptr - (2 * length)); cptr--; *cptr = *(heapptr - (3 * length)); cptr--; heapptr--; } memcpy(heap, ptr, (size_t) (length * 4)); free(ptr); return(*status); } /*--------------------------------------------------------------------------*/ static int fits_unshuffle_8bytes(char *heap, LONGLONG length, int *status) /* unshuffle the bytes in an array of 8-byte integers or doubles */ { LONGLONG ii; char *ptr, *cptr, *heapptr; ptr = malloc((size_t) (length * 8)); heapptr = heap + (8 * length) - 1; cptr = ptr + (8 * length) -1; for (ii = 0; ii < length; ii++) { *cptr = *heapptr; cptr--; *cptr = *(heapptr - length); cptr--; *cptr = *(heapptr - (2 * length)); cptr--; *cptr = *(heapptr - (3 * length)); cptr--; *cptr = *(heapptr - (4 * length)); cptr--; *cptr = *(heapptr - (5 * length)); cptr--; *cptr = *(heapptr - (6 * length)); cptr--; *cptr = *(heapptr - (7 * length)); cptr--; heapptr--; } memcpy(heap, ptr, (size_t) (length * 8)); free(ptr); return(*status); } healpy-1.8.1/cfitsio/smem.c0000654000175000017530000000500412272000775016161 0ustar zoncaplanck00000000000000#include #include #include #ifdef __APPLE__ #include #else #include #endif #include "fitsio.h" /* needed to define LONGLONG */ #include "drvrsmem.h" /* uses LONGLONG */ int main(int argc, char **argv) { int cmdok, listmode, longlistmode, recovermode, deletemode, id; int status; char *address; listmode = longlistmode = recovermode = deletemode = 0; id = -1; cmdok = 1; switch (argc) { case 1: listmode = 1; break; case 2: if (0 == strcmp("-l", argv[1])) longlistmode = 1; else if (0 == strcmp("-r", argv[1])) recovermode = 1; else if (0 == strcmp("-d", argv[1])) deletemode = 1; else cmdok = 0; break; case 3: if (0 == strcmp("-r", argv[1])) recovermode = 1; else if (0 == strcmp("-d", argv[1])) deletemode = 1; else { cmdok = 0; /* signal invalid cmd line syntax */ break; } if (1 != sscanf(argv[2], "%d", &id)) cmdok = 0; break; default: cmdok = 0; break; } if (0 == cmdok) { printf("usage :\n\n"); printf("smem - list all shared memory segments\n"); printf("\t!\tcouldn't obtain RDONLY lock - info unreliable\n"); printf("\tIdx\thandle of shared memory segment (visible by application)\n"); printf("\tKey\tcurrent system key of shared memory segment. Key\n"); printf("\t\tchanges whenever shmem segment is reallocated. Use\n"); printf("\t\tipcs (or ipcs -a) to view all shmem segments\n"); printf("\tNproc\tnumber of processes attached to segment\n"); printf("\tSize\tsize of shmem segment in bytes\n"); printf("\tFlags\tRESIZABLE - realloc allowed, PERSIST - segment is not\n"); printf("\t\tdeleted after shared_free called by last process attached\n"); printf("\t\tto it.\n"); printf("smem -d - delete all shared memory segments (may block)\n"); printf("smem -d id - delete specific shared memory segment (may block)\n"); printf("smem -r - unconditionally reset all shared memory segments\n\t\t(does not block, recovers zombie handles left by kill -9)\n"); printf("smem -r id - unconditionally reset specific shared memory segment\n"); } if (shared_init(0)) { printf("couldn't initialize shared memory, aborting ...\n"); return(10); } if (listmode) shared_list(id); else if (recovermode) shared_recover(id); else if (deletemode) shared_uncond_delete(id); for (id = 0; id <16; id++) { status = shared_getaddr(id, &address); if (!status)printf("id, status, address %d %d %ld %.30s\n", id, status, address, address); } return(0); } healpy-1.8.1/cfitsio/iter_c.c0000654000175000017530000001356712272000775016502 0ustar zoncaplanck00000000000000#include #include #include #include "fitsio.h" /* This example program illustrates how to use the CFITSIO iterator function. This program creates a 2D histogram of the X and Y columns of an event list. The 'main' routine just creates the empty new image, then executes the 'writehisto' work function by calling the CFITSIO iterator function. 'writehisto' opens the FITS event list that contains the X and Y columns. It then calls a second work function, calchisto, (by recursively calling the CFITSIO iterator function) which actually computes the 2D histogram. */ /* Globally defined parameters */ long xsize = 480; /* size of the histogram image */ long ysize = 480; long xbinsize = 32; long ybinsize = 32; main() { extern writehisto(); /* external work function passed to the iterator */ extern long xsize, ysize; /* size of image */ fitsfile *fptr; iteratorCol cols[1]; int n_cols, status = 0; long n_per_loop, offset, naxes[2]; char filename[] = "histoimg.fit"; /* name of FITS image */ remove(filename); /* delete previous version of the file if it exists */ fits_create_file(&fptr, filename, &status); /* create new output image */ naxes[0] = xsize; naxes[1] = ysize; fits_create_img(fptr, LONG_IMG, 2, naxes, &status); /* create primary HDU */ n_cols = 1; /* number of columns */ /* define input column structure members for the iterator function */ fits_iter_set_by_name(&cols[0], fptr, " ", TLONG, OutputCol); n_per_loop = -1; /* force whole array to be passed at one time */ offset = 0; /* don't skip over any pixels */ /* execute the function to create and write the 2D histogram */ printf("Calling writehisto iterator work function... %d\n", status); fits_iterate_data(n_cols, cols, offset, n_per_loop, writehisto, 0L, &status); fits_close_file(fptr, &status); /* all done; close the file */ if (status) fits_report_error(stderr, status); /* print out error messages */ else printf("Program completed successfully.\n"); return(status); } /*--------------------------------------------------------------------------*/ int writehisto(long totaln, long offset, long firstn, long nvalues, int narrays, iteratorCol *histo, void *userPointer) /* Iterator work function that writes out the 2D histogram. The histogram values are calculated by another work function, calchisto. This routine is executed only once since nvalues was forced to = totaln. */ { extern calchisto(); /* external function called by the iterator */ long *histogram; fitsfile *tblptr; iteratorCol cols[2]; int n_cols, status = 0; long rows_per_loop, rowoffset; char filename[] = "iter_c.fit"; /* name of FITS table */ /* do sanity checking of input values */ if (totaln != nvalues) return(-1); /* whole image must be passed at one time */ if (narrays != 1) return(-2); /* number of images is incorrect */ if (fits_iter_get_datatype(&histo[0]) != TLONG) return(-3); /* input array has wrong data type */ /* assign the FITS array pointer to the global histogram pointer */ histogram = (long *) fits_iter_get_array(&histo[0]); /* open the file and move to the table containing the X and Y columns */ fits_open_file(&tblptr, filename, READONLY, &status); fits_movnam_hdu(tblptr, BINARY_TBL, "EVENTS", 0, &status); if (status) return(status); n_cols = 2; /* number of columns */ /* define input column structure members for the iterator function */ fits_iter_set_by_name(&cols[0], tblptr, "X", TLONG, InputCol); fits_iter_set_by_name(&cols[1], tblptr, "Y", TLONG, InputCol); rows_per_loop = 0; /* take default number of rows per interation */ rowoffset = 0; /* calculate the histogram */ printf("Calling calchisto iterator work function... %d\n", status); fits_iterate_data(n_cols, cols, rowoffset, rows_per_loop, calchisto, histogram, &status); fits_close_file(tblptr, &status); /* all done */ return(status); } /*--------------------------------------------------------------------------*/ int calchisto(long totalrows, long offset, long firstrow, long nrows, int ncols, iteratorCol *cols, void *userPointer) /* Interator work function that calculates values for the 2D histogram. */ { extern long xsize, ysize, xbinsize, ybinsize; long ii, ihisto, xbin, ybin; static long *xcol, *ycol, *histogram; /* static to preserve values */ /*--------------------------------------------------------*/ /* Initialization procedures: execute on the first call */ /*--------------------------------------------------------*/ if (firstrow == 1) { /* do sanity checking of input values */ if (ncols != 2) return(-3); /* number of arrays is incorrect */ if (fits_iter_get_datatype(&cols[0]) != TLONG || fits_iter_get_datatype(&cols[1]) != TLONG) return(-4); /* wrong datatypes */ /* assign the input array points to the X and Y arrays */ xcol = (long *) fits_iter_get_array(&cols[0]); ycol = (long *) fits_iter_get_array(&cols[1]); histogram = (long *) userPointer; /* initialize the histogram image pixels = 0 */ for (ii = 0; ii <= xsize * ysize; ii++) histogram[ii] = 0L; } /*------------------------------------------------------------------*/ /* Main loop: increment the 2D histogram at position of each event */ /*------------------------------------------------------------------*/ for (ii = 1; ii <= nrows; ii++) { xbin = xcol[ii] / xbinsize; ybin = ycol[ii] / ybinsize; ihisto = ( ybin * xsize ) + xbin + 1; histogram[ihisto]++; } return(0); } healpy-1.8.1/cfitsio/fitsio2.h0000654000175000017530000016327612272000775016624 0ustar zoncaplanck00000000000000#ifndef _FITSIO2_H #define _FITSIO2_H #include "fitsio.h" /* Threading support using POSIX threads programming interface (supplied by Bruce O'Neel) All threaded programs MUST have the -D_REENTRANT on the compile line and must link with -lpthread. This means that when one builds cfitsio for threads you must have -D_REENTRANT on the gcc or cc command line. */ #ifdef _REENTRANT #include /* #include not needed any more */ extern pthread_mutex_t Fitsio_Lock; extern int Fitsio_Pthread_Status; #define FFLOCK1(lockname) (Fitsio_Pthread_Status = pthread_mutex_lock(&lockname)) #define FFUNLOCK1(lockname) (Fitsio_Pthread_Status = pthread_mutex_unlock(&lockname)) #define FFLOCK FFLOCK1(Fitsio_Lock) #define FFUNLOCK FFUNLOCK1(Fitsio_Lock) #else #define FFLOCK #define FFUNLOCK #endif /* If REPLACE_LINKS is defined, then whenever CFITSIO fails to open a file with write access because it is a soft link to a file that only has read access, then CFITSIO will attempt to replace the link with a local copy of the file, with write access. This feature was originally added to support the ftools in the Hera environment, where many of the user's data file are soft links. */ #if defined(BUILD_HERA) #define REPLACE_LINKS 1 #endif #define USE_LARGE_VALUE -99 /* flag used when writing images */ #define DBUFFSIZE 28800 /* size of data buffer in bytes */ #define NMAXFILES 1000 /* maximum number of FITS files that can be opened */ /* CFITSIO will allocate (NMAXFILES * 80) bytes of memory */ /* plus each file that is opened will use NIOBUF * 2880 bytes of memeory */ /* where NIOBUF is defined in fitio.h and has a default value of 40 */ #define MINDIRECT 8640 /* minimum size for direct reads and writes */ /* MINDIRECT must have a value >= 8640 */ /* it is useful to identify certain specific types of machines */ #define NATIVE 0 /* machine that uses non-byteswapped IEEE formats */ #define OTHERTYPE 1 /* any other type of machine */ #define VAXVMS 3 /* uses an odd floating point format */ #define ALPHAVMS 4 /* uses an odd floating point format */ #define IBMPC 5 /* used in drvrfile.c to work around a bug on PCs */ #define CRAY 6 /* requires a special NaN test algorithm */ #define GFLOAT 1 /* used for VMS */ #define IEEEFLOAT 2 /* used for VMS */ /* ======================================================================= */ /* The following logic is used to determine the type machine, */ /* whether the bytes are swapped, and the number of bits in a long value */ /* ======================================================================= */ /* The following platforms have sizeof(long) == 8 */ /* This block of code should match a similar block in fitsio.h */ /* and the block of code at the beginning of f77_wrap.h */ #if defined(__alpha) && ( defined(__unix__) || defined(__NetBSD__) ) /* old Dec Alpha platforms running OSF */ #define BYTESWAPPED TRUE #define LONGSIZE 64 #elif defined(__sparcv9) || (defined(__sparc__) && defined(__arch64__)) /* SUN Solaris7 in 64-bit mode */ #define BYTESWAPPED FALSE #define MACHINE NATIVE #define LONGSIZE 64 /* IBM System z mainframe support */ #elif defined(__s390x__) #define BYTESWAPPED FALSE #define LONGSIZE 64 #elif defined(__s390__) #define BYTESWAPPED FALSE #define LONGSIZE 32 #elif defined(__ia64__) || defined(__x86_64__) /* Intel itanium 64-bit PC, or AMD opteron 64-bit PC */ #define BYTESWAPPED TRUE #define LONGSIZE 64 #elif defined(_SX) /* Nec SuperUx */ #define BYTESWAPPED FALSE #define MACHINE NATIVE #define LONGSIZE 64 #elif defined(__powerpc64__) || defined(__64BIT__) /* IBM 64-bit AIX powerpc*/ /* could also test for __ppc64__ or __PPC64 */ #define BYTESWAPPED FALSE #define MACHINE NATIVE #define LONGSIZE 64 #elif defined(_MIPS_SZLONG) # if defined(MIPSEL) # define BYTESWAPPED TRUE # else # define BYTESWAPPED FALSE # define MACHINE NATIVE # endif # if _MIPS_SZLONG == 32 # define LONGSIZE 32 # elif _MIPS_SZLONG == 64 # define LONGSIZE 64 # else # error "can't handle long size given by _MIPS_SZLONG" # endif /* ============================================================== */ /* the following are all 32-bit byteswapped platforms */ #elif defined(vax) && defined(VMS) #define MACHINE VAXVMS #define BYTESWAPPED TRUE #elif defined(__alpha) && defined(__VMS) #if (__D_FLOAT == TRUE) /* this float option is the same as for VAX/VMS machines. */ #define MACHINE VAXVMS #define BYTESWAPPED TRUE #elif (__G_FLOAT == TRUE) /* G_FLOAT is the default for ALPHA VMS systems */ #define MACHINE ALPHAVMS #define BYTESWAPPED TRUE #define FLOATTYPE GFLOAT #elif (__IEEE_FLOAT == TRUE) #define MACHINE ALPHAVMS #define BYTESWAPPED TRUE #define FLOATTYPE IEEEFLOAT #endif /* end of alpha VMS case */ #elif defined(ultrix) && defined(unix) /* old Dec ultrix machines */ #define BYTESWAPPED TRUE #elif defined(__i386) || defined(__i386__) || defined(__i486__) || defined(__i586__) \ || defined(_MSC_VER) || defined(__BORLANDC__) || defined(__TURBOC__) \ || defined(_NI_mswin_) || defined(__EMX__) /* generic 32-bit IBM PC */ #define MACHINE IBMPC #define BYTESWAPPED TRUE #elif defined(__arm__) /* This assumes all ARM are little endian. In the future, it might be */ /* necessary to use "if defined(__ARMEL__)" to distinguish little from big. */ /* (__ARMEL__ would be defined on little-endian, but not on big-endian). */ #define BYTESWAPPED TRUE #elif defined(__tile__) /* 64-core 8x8-architecture Tile64 platform */ #define BYTESWAPPED TRUE #elif defined(__sh__) /* SuperH CPU can be used in both little and big endian modes */ #if defined(__LITTLE_ENDIAN__) #define BYTESWAPPED TRUE #else #define BYTESWAPPED FALSE #endif #else /* assume all other machine uses the same IEEE formats as used in FITS files */ /* e.g., Macs fall into this category */ #define MACHINE NATIVE #define BYTESWAPPED FALSE #endif #ifndef MACHINE #define MACHINE OTHERTYPE #endif /* assume longs are 4 bytes long, unless previously set otherwise */ #ifndef LONGSIZE #define LONGSIZE 32 #endif /* end of block that determine long size and byte swapping */ /* ==================================================================== */ #define IGNORE_EOF 1 #define REPORT_EOF 0 #define DATA_UNDEFINED -1 #define NULL_UNDEFINED 1234554321 #define ASCII_NULL_UNDEFINED 1 /* indicate no defined null value */ #define maxvalue(A,B) ((A) > (B) ? (A) : (B)) #define minvalue(A,B) ((A) < (B) ? (A) : (B)) /* faster string comparison macros */ #define FSTRCMP(a,b) ((a)[0]<(b)[0]? -1:(a)[0]>(b)[0]?1:strcmp((a),(b))) #define FSTRNCMP(a,b,n) ((a)[0]<(b)[0]?-1:(a)[0]>(b)[0]?1:strncmp((a),(b),(n))) #if defined(__VMS) || defined(VMS) #define FNANMASK 0xFFFF /* mask all bits */ #define DNANMASK 0xFFFF /* mask all bits */ #else #define FNANMASK 0x7F80 /* mask bits 1 - 8; all set on NaNs */ /* all 0 on underflow or 0. */ #define DNANMASK 0x7FF0 /* mask bits 1 - 11; all set on NaNs */ /* all 0 on underflow or 0. */ #endif #if MACHINE == CRAY /* Cray machines: the large negative integer corresponds to the 3 most sig digits set to 1. If these 3 bits are set in a floating point number (64 bits), then it represents a reserved value (i.e., a NaN) */ #define fnan(L) ( (L) >= 0xE000000000000000 ? 1 : 0) ) #else /* these functions work for both big and little endian machines */ /* that use the IEEE floating point format for internal numbers */ /* These functions tests whether the float value is a reserved IEEE */ /* value such as a Not-a-Number (NaN), or underflow, overflow, or */ /* infinity. The functions returns 1 if the value is a NaN, overflow */ /* or infinity; it returns 2 if the value is an denormalized underflow */ /* value; otherwise it returns 0. fnan tests floats, dnan tests doubles */ #define fnan(L) \ ( (L & FNANMASK) == FNANMASK ? 1 : (L & FNANMASK) == 0 ? 2 : 0) #define dnan(L) \ ( (L & DNANMASK) == DNANMASK ? 1 : (L & DNANMASK) == 0 ? 2 : 0) #endif #define DSCHAR_MAX 127.49 /* max double value that fits in an signed char */ #define DSCHAR_MIN -128.49 /* min double value that fits in an signed char */ #define DUCHAR_MAX 255.49 /* max double value that fits in an unsigned char */ #define DUCHAR_MIN -0.49 /* min double value that fits in an unsigned char */ #define DUSHRT_MAX 65535.49 /* max double value that fits in a unsigned short*/ #define DUSHRT_MIN -0.49 /* min double value that fits in an unsigned short */ #define DSHRT_MAX 32767.49 /* max double value that fits in a short */ #define DSHRT_MIN -32768.49 /* min double value that fits in a short */ #if LONGSIZE == 32 # define DLONG_MAX 2147483647.49 /* max double value that fits in a long */ # define DLONG_MIN -2147483648.49 /* min double value that fits in a long */ # define DULONG_MAX 4294967295.49 /* max double that fits in a unsigned long */ #else # define DLONG_MAX 9.2233720368547752E18 /* max double value long */ # define DLONG_MIN -9.2233720368547752E18 /* min double value long */ # define DULONG_MAX 1.84467440737095504E19 /* max double value ulong */ #endif #define DULONG_MIN -0.49 /* min double value that fits in an unsigned long */ #define DLONGLONG_MAX 9.2233720368547755807E18 /* max double value longlong */ #define DLONGLONG_MIN -9.2233720368547755808E18 /* min double value longlong */ #define DUINT_MAX 4294967295.49 /* max dbl that fits in a unsigned 4-byte int */ #define DUINT_MIN -0.49 /* min dbl that fits in an unsigned 4-byte int */ #define DINT_MAX 2147483647.49 /* max double value that fits in a 4-byte int */ #define DINT_MIN -2147483648.49 /* min double value that fits in a 4-byte int */ #ifndef UINT32_MAX #define UINT32_MAX 4294967295U /* max unsigned 32-bit integer */ #endif #ifndef INT32_MAX #define INT32_MAX 2147483647 /* max 32-bit integer */ #endif #ifndef INT32_MIN #define INT32_MIN (-INT32_MAX -1) /* min 32-bit integer */ #endif #define COMPRESS_NULL_VALUE -2147483647 #define N_RANDOM 10000 /* DO NOT CHANGE THIS; used when quantizing real numbers */ int ffgnky(fitsfile *fptr, char *card, int *status); void ffcfmt(char *tform, char *cform); void ffcdsp(char *tform, char *cform); void ffswap2(short *values, long nvalues); void ffswap4(INT32BIT *values, long nvalues); void ffswap8(double *values, long nvalues); int ffi2c(LONGLONG ival, char *cval, int *status); int ffl2c(int lval, char *cval, int *status); int ffs2c(const char *instr, char *outstr, int *status); int ffr2f(float fval, int decim, char *cval, int *status); int ffr2e(float fval, int decim, char *cval, int *status); int ffd2f(double dval, int decim, char *cval, int *status); int ffd2e(double dval, int decim, char *cval, int *status); int ffc2ii(const char *cval, long *ival, int *status); int ffc2jj(const char *cval, LONGLONG *ival, int *status); int ffc2ll(const char *cval, int *lval, int *status); int ffc2rr(const char *cval, float *fval, int *status); int ffc2dd(const char *cval, double *dval, int *status); int ffc2x(const char *cval, char *dtype, long *ival, int *lval, char *sval, double *dval, int *status); int ffc2xx(const char *cval, char *dtype, LONGLONG *ival, int *lval, char *sval, double *dval, int *status); int ffc2s(const char *instr, char *outstr, int *status); int ffc2i(const char *cval, long *ival, int *status); int ffc2j(const char *cval, LONGLONG *ival, int *status); int ffc2r(const char *cval, float *fval, int *status); int ffc2d(const char *cval, double *dval, int *status); int ffc2l(const char *cval, int *lval, int *status); void ffxmsg(int action, char *err_message); int ffgcnt(fitsfile *fptr, char *value, int *status); int ffgtkn(fitsfile *fptr, int numkey, char *keyname, long *value, int *status); int ffgtknjj(fitsfile *fptr, int numkey, char *keyname, LONGLONG *value, int *status); int fftkyn(fitsfile *fptr, int numkey, char *keyname, char *value, int *status); int ffgphd(fitsfile *fptr, int maxdim, int *simple, int *bitpix, int *naxis, LONGLONG naxes[], long *pcount, long *gcount, int *extend, double *bscale, double *bzero, LONGLONG *blank, int *nspace, int *status); int ffgttb(fitsfile *fptr, LONGLONG *rowlen, LONGLONG *nrows, LONGLONG *pcount, long *tfield, int *status); int ffmkey(fitsfile *fptr, const char *card, int *status); /* ffmbyt has been moved to fitsio.h */ int ffgbyt(fitsfile *fptr, LONGLONG nbytes, void *buffer, int *status); int ffpbyt(fitsfile *fptr, LONGLONG nbytes, void *buffer, int *status); int ffgbytoff(fitsfile *fptr, long gsize, long ngroups, long offset, void *buffer, int *status); int ffpbytoff(fitsfile *fptr, long gsize, long ngroups, long offset, void *buffer, int *status); int ffldrc(fitsfile *fptr, long record, int err_mode, int *status); int ffwhbf(fitsfile *fptr, int *nbuff); int ffbfeof(fitsfile *fptr, int *status); int ffbfwt(FITSfile *Fptr, int nbuff, int *status); int ffpxsz(int datatype); int ffourl(char *url, char *urltype, char *outfile, char *tmplfile, char *compspec, int *status); int ffparsecompspec(fitsfile *fptr, char *compspec, int *status); int ffoptplt(fitsfile *fptr, const char *tempname, int *status); int fits_is_this_a_copy(char *urltype); int fits_store_Fptr(FITSfile *Fptr, int *status); int fits_clear_Fptr(FITSfile *Fptr, int *status); int fits_already_open(fitsfile **fptr, char *url, char *urltype, char *infile, char *extspec, char *rowfilter, char *binspec, char *colspec, int mode,int *isopen, int *status); int ffedit_columns(fitsfile **fptr, char *outfile, char *expr, int *status); int fits_get_col_minmax(fitsfile *fptr, int colnum, float *datamin, float *datamax, int *status); int ffwritehisto(long totaln, long offset, long firstn, long nvalues, int narrays, iteratorCol *imagepars, void *userPointer); int ffcalchist(long totalrows, long offset, long firstrow, long nrows, int ncols, iteratorCol *colpars, void *userPointer); int ffrhdu(fitsfile *fptr, int *hdutype, int *status); int ffpinit(fitsfile *fptr, int *status); int ffainit(fitsfile *fptr, int *status); int ffbinit(fitsfile *fptr, int *status); int ffchdu(fitsfile *fptr, int *status); int ffwend(fitsfile *fptr, int *status); int ffpdfl(fitsfile *fptr, int *status); int ffuptf(fitsfile *fptr, int *status); int ffdblk(fitsfile *fptr, long nblocks, int *status); int ffgext(fitsfile *fptr, int moveto, int *exttype, int *status); int ffgtbc(fitsfile *fptr, LONGLONG *totalwidth, int *status); int ffgtbp(fitsfile *fptr, char *name, char *value, int *status); int ffiblk(fitsfile *fptr, long nblock, int headdata, int *status); int ffshft(fitsfile *fptr, LONGLONG firstbyte, LONGLONG nbytes, LONGLONG nshift, int *status); int ffgcprll(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, int writemode, double *scale, double *zero, char *tform, long *twidth, int *tcode, int *maxelem, LONGLONG *startpos, LONGLONG *elemnum, long *incre, LONGLONG *repeat, LONGLONG *rowlen, int *hdutype, LONGLONG *tnull, char *snull, int *status); int ffflushx(FITSfile *fptr); int ffseek(FITSfile *fptr, LONGLONG position); int ffread(FITSfile *fptr, long nbytes, void *buffer, int *status); int ffwrite(FITSfile *fptr, long nbytes, void *buffer, int *status); int fftrun(fitsfile *fptr, LONGLONG filesize, int *status); int ffpcluc(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, int *status); int ffgcll(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, int nultyp, char nulval, char *array, char *nularray, int *anynul, int *status); int ffgcls(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, int nultyp, char *nulval, char **array, char *nularray, int *anynul, int *status); int ffgcls2(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, int nultyp, char *nulval, char **array, char *nularray, int *anynul, int *status); int ffgclb(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, long elemincre, int nultyp, unsigned char nulval, unsigned char *array, char *nularray, int *anynul, int *status); int ffgclsb(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, long elemincre, int nultyp, signed char nulval, signed char *array, char *nularray, int *anynul, int *status); int ffgclui(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, long elemincre, int nultyp, unsigned short nulval, unsigned short *array, char *nularray, int *anynul, int *status); int ffgcli(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, long elemincre, int nultyp, short nulval, short *array, char *nularray, int *anynul, int *status); int ffgcluj(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, long elemincre, int nultyp, unsigned long nulval, unsigned long *array, char *nularray, int *anynul, int *status); int ffgcljj(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, long elemincre, int nultyp, LONGLONG nulval, LONGLONG *array, char *nularray, int *anynul, int *status); int ffgclj(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, long elemincre, int nultyp, long nulval, long *array, char *nularray, int *anynul, int *status); int ffgcluk(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, long elemincre, int nultyp, unsigned int nulval, unsigned int *array, char *nularray, int *anynul, int *status); int ffgclk(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, long elemincre, int nultyp, int nulval, int *array, char *nularray, int *anynul, int *status); int ffgcle(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, long elemincre, int nultyp, float nulval, float *array, char *nularray, int *anynul, int *status); int ffgcld(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, long elemincre, int nultyp, double nulval, double *array, char *nularray, int *anynul, int *status); int ffpi1b(fitsfile *fptr, long nelem, long incre, unsigned char *buffer, int *status); int ffpi2b(fitsfile *fptr, long nelem, long incre, short *buffer, int *status); int ffpi4b(fitsfile *fptr, long nelem, long incre, INT32BIT *buffer, int *status); int ffpi8b(fitsfile *fptr, long nelem, long incre, long *buffer, int *status); int ffpr4b(fitsfile *fptr, long nelem, long incre, float *buffer, int *status); int ffpr8b(fitsfile *fptr, long nelem, long incre, double *buffer, int *status); int ffgi1b(fitsfile *fptr, LONGLONG pos, long nelem, long incre, unsigned char *buffer, int *status); int ffgi2b(fitsfile *fptr, LONGLONG pos, long nelem, long incre, short *buffer, int *status); int ffgi4b(fitsfile *fptr, LONGLONG pos, long nelem, long incre, INT32BIT *buffer, int *status); int ffgi8b(fitsfile *fptr, LONGLONG pos, long nelem, long incre, long *buffer, int *status); int ffgr4b(fitsfile *fptr, LONGLONG pos, long nelem, long incre, float *buffer, int *status); int ffgr8b(fitsfile *fptr, LONGLONG pos, long nelem, long incre, double *buffer, int *status); int ffcins(fitsfile *fptr, LONGLONG naxis1, LONGLONG naxis2, LONGLONG nbytes, LONGLONG bytepos, int *status); int ffcdel(fitsfile *fptr, LONGLONG naxis1, LONGLONG naxis2, LONGLONG nbytes, LONGLONG bytepos, int *status); int ffkshf(fitsfile *fptr, int firstcol, int tfields, int nshift, int *status); int fffi1i1(unsigned char *input, long ntodo, double scale, double zero, int nullcheck, unsigned char tnull, unsigned char nullval, char *nullarray, int *anynull, unsigned char *output, int *status); int fffi2i1(short *input, long ntodo, double scale, double zero, int nullcheck, short tnull, unsigned char nullval, char *nullarray, int *anynull, unsigned char *output, int *status); int fffi4i1(INT32BIT *input, long ntodo, double scale, double zero, int nullcheck, INT32BIT tnull, unsigned char nullval, char *nullarray, int *anynull, unsigned char *output, int *status); int fffi8i1(LONGLONG *input, long ntodo, double scale, double zero, int nullcheck, LONGLONG tnull, unsigned char nullval, char *nullarray, int *anynull, unsigned char *output, int *status); int fffr4i1(float *input, long ntodo, double scale, double zero, int nullcheck, unsigned char nullval, char *nullarray, int *anynull, unsigned char *output, int *status); int fffr8i1(double *input, long ntodo, double scale, double zero, int nullcheck, unsigned char nullval, char *nullarray, int *anynull, unsigned char *output, int *status); int fffstri1(char *input, long ntodo, double scale, double zero, long twidth, double power, int nullcheck, char *snull, unsigned char nullval, char *nullarray, int *anynull, unsigned char *output, int *status); int fffi1s1(unsigned char *input, long ntodo, double scale, double zero, int nullcheck, unsigned char tnull, signed char nullval, char *nullarray, int *anynull, signed char *output, int *status); int fffi2s1(short *input, long ntodo, double scale, double zero, int nullcheck, short tnull, signed char nullval, char *nullarray, int *anynull, signed char *output, int *status); int fffi4s1(INT32BIT *input, long ntodo, double scale, double zero, int nullcheck, INT32BIT tnull, signed char nullval, char *nullarray, int *anynull, signed char *output, int *status); int fffi8s1(LONGLONG *input, long ntodo, double scale, double zero, int nullcheck, LONGLONG tnull, signed char nullval, char *nullarray, int *anynull, signed char *output, int *status); int fffr4s1(float *input, long ntodo, double scale, double zero, int nullcheck, signed char nullval, char *nullarray, int *anynull, signed char *output, int *status); int fffr8s1(double *input, long ntodo, double scale, double zero, int nullcheck, signed char nullval, char *nullarray, int *anynull, signed char *output, int *status); int fffstrs1(char *input, long ntodo, double scale, double zero, long twidth, double power, int nullcheck, char *snull, signed char nullval, char *nullarray, int *anynull, signed char *output, int *status); int fffi1u2(unsigned char *input, long ntodo, double scale, double zero, int nullcheck, unsigned char tnull, unsigned short nullval, char *nullarray, int *anynull, unsigned short *output, int *status); int fffi2u2(short *input, long ntodo, double scale, double zero, int nullcheck, short tnull, unsigned short nullval, char *nullarray, int *anynull, unsigned short *output, int *status); int fffi4u2(INT32BIT *input, long ntodo, double scale, double zero, int nullcheck, INT32BIT tnull, unsigned short nullval, char *nullarray, int *anynull, unsigned short *output, int *status); int fffi8u2(LONGLONG *input, long ntodo, double scale, double zero, int nullcheck, LONGLONG tnull, unsigned short nullval, char *nullarray, int *anynull, unsigned short *output, int *status); int fffr4u2(float *input, long ntodo, double scale, double zero, int nullcheck, unsigned short nullval, char *nullarray, int *anynull, unsigned short *output, int *status); int fffr8u2(double *input, long ntodo, double scale, double zero, int nullcheck, unsigned short nullval, char *nullarray, int *anynull, unsigned short *output, int *status); int fffstru2(char *input, long ntodo, double scale, double zero, long twidth, double power, int nullcheck, char *snull, unsigned short nullval, char *nullarray, int *anynull, unsigned short *output, int *status); int fffi1i2(unsigned char *input, long ntodo, double scale, double zero, int nullcheck, unsigned char tnull, short nullval, char *nullarray, int *anynull, short *output, int *status); int fffi2i2(short *input, long ntodo, double scale, double zero, int nullcheck, short tnull, short nullval, char *nullarray, int *anynull, short *output, int *status); int fffi4i2(INT32BIT *input, long ntodo, double scale, double zero, int nullcheck, INT32BIT tnull, short nullval, char *nullarray, int *anynull, short *output, int *status); int fffi8i2(LONGLONG *input, long ntodo, double scale, double zero, int nullcheck, LONGLONG tnull, short nullval, char *nullarray, int *anynull, short *output, int *status); int fffr4i2(float *input, long ntodo, double scale, double zero, int nullcheck, short nullval, char *nullarray, int *anynull, short *output, int *status); int fffr8i2(double *input, long ntodo, double scale, double zero, int nullcheck, short nullval, char *nullarray, int *anynull, short *output, int *status); int fffstri2(char *input, long ntodo, double scale, double zero, long twidth, double power, int nullcheck, char *snull, short nullval, char *nullarray, int *anynull, short *output, int *status); int fffi1u4(unsigned char *input, long ntodo, double scale, double zero, int nullcheck, unsigned char tnull, unsigned long nullval, char *nullarray, int *anynull, unsigned long *output, int *status); int fffi2u4(short *input, long ntodo, double scale, double zero, int nullcheck, short tnull, unsigned long nullval, char *nullarray, int *anynull, unsigned long *output, int *status); int fffi4u4(INT32BIT *input, long ntodo, double scale, double zero, int nullcheck, INT32BIT tnull, unsigned long nullval, char *nullarray, int *anynull, unsigned long *output, int *status); int fffi8u4(LONGLONG *input, long ntodo, double scale, double zero, int nullcheck, LONGLONG tnull, unsigned long nullval, char *nullarray, int *anynull, unsigned long *output, int *status); int fffr4u4(float *input, long ntodo, double scale, double zero, int nullcheck, unsigned long nullval, char *nullarray, int *anynull, unsigned long *output, int *status); int fffr8u4(double *input, long ntodo, double scale, double zero, int nullcheck, unsigned long nullval, char *nullarray, int *anynull, unsigned long *output, int *status); int fffstru4(char *input, long ntodo, double scale, double zero, long twidth, double power, int nullcheck, char *snull, unsigned long nullval, char *nullarray, int *anynull, unsigned long *output, int *status); int fffi1i4(unsigned char *input, long ntodo, double scale, double zero, int nullcheck, unsigned char tnull, long nullval, char *nullarray, int *anynull, long *output, int *status); int fffi2i4(short *input, long ntodo, double scale, double zero, int nullcheck, short tnull, long nullval, char *nullarray, int *anynull, long *output, int *status); int fffi4i4(INT32BIT *input, long ntodo, double scale, double zero, int nullcheck, INT32BIT tnull, long nullval, char *nullarray, int *anynull, long *output, int *status); int fffi8i4(LONGLONG *input, long ntodo, double scale, double zero, int nullcheck, LONGLONG tnull, long nullval, char *nullarray, int *anynull, long *output, int *status); int fffr4i4(float *input, long ntodo, double scale, double zero, int nullcheck, long nullval, char *nullarray, int *anynull, long *output, int *status); int fffr8i4(double *input, long ntodo, double scale, double zero, int nullcheck, long nullval, char *nullarray, int *anynull, long *output, int *status); int fffstri4(char *input, long ntodo, double scale, double zero, long twidth, double power, int nullcheck, char *snull, long nullval, char *nullarray, int *anynull, long *output, int *status); int fffi1int(unsigned char *input, long ntodo, double scale, double zero, int nullcheck, unsigned char tnull, int nullval, char *nullarray, int *anynull, int *output, int *status); int fffi2int(short *input, long ntodo, double scale, double zero, int nullcheck, short tnull, int nullval, char *nullarray, int *anynull, int *output, int *status); int fffi4int(INT32BIT *input, long ntodo, double scale, double zero, int nullcheck, INT32BIT tnull, int nullval, char *nullarray, int *anynull, int *output, int *status); int fffi8int(LONGLONG *input, long ntodo, double scale, double zero, int nullcheck, LONGLONG tnull, int nullval, char *nullarray, int *anynull, int *output, int *status); int fffr4int(float *input, long ntodo, double scale, double zero, int nullcheck, int nullval, char *nullarray, int *anynull, int *output, int *status); int fffr8int(double *input, long ntodo, double scale, double zero, int nullcheck, int nullval, char *nullarray, int *anynull, int *output, int *status); int fffstrint(char *input, long ntodo, double scale, double zero, long twidth, double power, int nullcheck, char *snull, int nullval, char *nullarray, int *anynull, int *output, int *status); int fffi1uint(unsigned char *input, long ntodo, double scale, double zero, int nullcheck, unsigned char tnull, unsigned int nullval, char *nullarray, int *anynull, unsigned int *output, int *status); int fffi2uint(short *input, long ntodo, double scale, double zero, int nullcheck, short tnull, unsigned int nullval, char *nullarray, int *anynull, unsigned int *output, int *status); int fffi4uint(INT32BIT *input, long ntodo, double scale, double zero, int nullcheck, INT32BIT tnull, unsigned int nullval, char *nullarray, int *anynull, unsigned int *output, int *status); int fffi8uint(LONGLONG *input, long ntodo, double scale, double zero, int nullcheck, LONGLONG tnull, unsigned int nullval, char *nullarray, int *anynull, unsigned int *output, int *status); int fffr4uint(float *input, long ntodo, double scale, double zero, int nullcheck, unsigned int nullval, char *nullarray, int *anynull, unsigned int *output, int *status); int fffr8uint(double *input, long ntodo, double scale, double zero, int nullcheck, unsigned int nullval, char *nullarray, int *anynull, unsigned int *output, int *status); int fffstruint(char *input, long ntodo, double scale, double zero, long twidth, double power, int nullcheck, char *snull, unsigned int nullval, char *nullarray, int *anynull, unsigned int *output, int *status); int fffi1i8(unsigned char *input, long ntodo, double scale, double zero, int nullcheck, unsigned char tnull, LONGLONG nullval, char *nullarray, int *anynull, LONGLONG *output, int *status); int fffi2i8(short *input, long ntodo, double scale, double zero, int nullcheck, short tnull, LONGLONG nullval, char *nullarray, int *anynull, LONGLONG *output, int *status); int fffi4i8(INT32BIT *input, long ntodo, double scale, double zero, int nullcheck, INT32BIT tnull, LONGLONG nullval, char *nullarray, int *anynull, LONGLONG *output, int *status); int fffi8i8(LONGLONG *input, long ntodo, double scale, double zero, int nullcheck, LONGLONG tnull, LONGLONG nullval, char *nullarray, int *anynull, LONGLONG *output, int *status); int fffr4i8(float *input, long ntodo, double scale, double zero, int nullcheck, LONGLONG nullval, char *nullarray, int *anynull, LONGLONG *output, int *status); int fffr8i8(double *input, long ntodo, double scale, double zero, int nullcheck, LONGLONG nullval, char *nullarray, int *anynull, LONGLONG *output, int *status); int fffstri8(char *input, long ntodo, double scale, double zero, long twidth, double power, int nullcheck, char *snull, LONGLONG nullval, char *nullarray, int *anynull, LONGLONG *output, int *status); int fffi1r4(unsigned char *input, long ntodo, double scale, double zero, int nullcheck, unsigned char tnull, float nullval, char *nullarray, int *anynull, float *output, int *status); int fffi2r4(short *input, long ntodo, double scale, double zero, int nullcheck, short tnull, float nullval, char *nullarray, int *anynull, float *output, int *status); int fffi4r4(INT32BIT *input, long ntodo, double scale, double zero, int nullcheck, INT32BIT tnull, float nullval, char *nullarray, int *anynull, float *output, int *status); int fffi8r4(LONGLONG *input, long ntodo, double scale, double zero, int nullcheck, LONGLONG tnull, float nullval, char *nullarray, int *anynull, float *output, int *status); int fffr4r4(float *input, long ntodo, double scale, double zero, int nullcheck, float nullval, char *nullarray, int *anynull, float *output, int *status); int fffr8r4(double *input, long ntodo, double scale, double zero, int nullcheck, float nullval, char *nullarray, int *anynull, float *output, int *status); int fffstrr4(char *input, long ntodo, double scale, double zero, long twidth, double power, int nullcheck, char *snull, float nullval, char *nullarray, int *anynull, float *output, int *status); int fffi1r8(unsigned char *input, long ntodo, double scale, double zero, int nullcheck, unsigned char tnull, double nullval, char *nullarray, int *anynull, double *output, int *status); int fffi2r8(short *input, long ntodo, double scale, double zero, int nullcheck, short tnull, double nullval, char *nullarray, int *anynull, double *output, int *status); int fffi4r8(INT32BIT *input, long ntodo, double scale, double zero, int nullcheck, INT32BIT tnull, double nullval, char *nullarray, int *anynull, double *output, int *status); int fffi8r8(LONGLONG *input, long ntodo, double scale, double zero, int nullcheck, LONGLONG tnull, double nullval, char *nullarray, int *anynull, double *output, int *status); int fffr4r8(float *input, long ntodo, double scale, double zero, int nullcheck, double nullval, char *nullarray, int *anynull, double *output, int *status); int fffr8r8(double *input, long ntodo, double scale, double zero, int nullcheck, double nullval, char *nullarray, int *anynull, double *output, int *status); int fffstrr8(char *input, long ntodo, double scale, double zero, long twidth, double power, int nullcheck, char *snull, double nullval, char *nullarray, int *anynull, double *output, int *status); int ffi1fi1(unsigned char *array, long ntodo, double scale, double zero, unsigned char *buffer, int *status); int ffs1fi1(signed char *array, long ntodo, double scale, double zero, unsigned char *buffer, int *status); int ffu2fi1(unsigned short *array, long ntodo, double scale, double zero, unsigned char *buffer, int *status); int ffi2fi1(short *array, long ntodo, double scale, double zero, unsigned char *buffer, int *status); int ffu4fi1(unsigned long *array, long ntodo, double scale, double zero, unsigned char *buffer, int *status); int ffi4fi1(long *array, long ntodo, double scale, double zero, unsigned char *buffer, int *status); int ffi8fi1(LONGLONG *array, long ntodo, double scale, double zero, unsigned char *buffer, int *status); int ffuintfi1(unsigned int *array, long ntodo, double scale, double zero, unsigned char *buffer, int *status); int ffintfi1(int *array, long ntodo, double scale, double zero, unsigned char *buffer, int *status); int ffr4fi1(float *array, long ntodo, double scale, double zero, unsigned char *buffer, int *status); int ffr8fi1(double *array, long ntodo, double scale, double zero, unsigned char *buffer, int *status); int ffi1fi2(unsigned char *array, long ntodo, double scale, double zero, short *buffer, int *status); int ffs1fi2(signed char *array, long ntodo, double scale, double zero, short *buffer, int *status); int ffu2fi2(unsigned short *array, long ntodo, double scale, double zero, short *buffer, int *status); int ffi2fi2(short *array, long ntodo, double scale, double zero, short *buffer, int *status); int ffu4fi2(unsigned long *array, long ntodo, double scale, double zero, short *buffer, int *status); int ffi4fi2(long *array, long ntodo, double scale, double zero, short *buffer, int *status); int ffi8fi2(LONGLONG *array, long ntodo, double scale, double zero, short *buffer, int *status); int ffuintfi2(unsigned int *array, long ntodo, double scale, double zero, short *buffer, int *status); int ffintfi2(int *array, long ntodo, double scale, double zero, short *buffer, int *status); int ffr4fi2(float *array, long ntodo, double scale, double zero, short *buffer, int *status); int ffr8fi2(double *array, long ntodo, double scale, double zero, short *buffer, int *status); int ffi1fi4(unsigned char *array, long ntodo, double scale, double zero, INT32BIT *buffer, int *status); int ffs1fi4(signed char *array, long ntodo, double scale, double zero, INT32BIT *buffer, int *status); int ffu2fi4(unsigned short *array, long ntodo, double scale, double zero, INT32BIT *buffer, int *status); int ffi2fi4(short *array, long ntodo, double scale, double zero, INT32BIT *buffer, int *status); int ffu4fi4(unsigned long *array, long ntodo, double scale, double zero, INT32BIT *buffer, int *status); int ffi4fi4(long *array, long ntodo, double scale, double zero, INT32BIT *buffer, int *status); int ffi8fi4(LONGLONG *array, long ntodo, double scale, double zero, INT32BIT *buffer, int *status); int ffuintfi4(unsigned int *array, long ntodo, double scale, double zero, INT32BIT *buffer, int *status); int ffintfi4(int *array, long ntodo, double scale, double zero, INT32BIT *buffer, int *status); int ffr4fi4(float *array, long ntodo, double scale, double zero, INT32BIT *buffer, int *status); int ffr8fi4(double *array, long ntodo, double scale, double zero, INT32BIT *buffer, int *status); int fflongfi8(long *array, long ntodo, double scale, double zero, LONGLONG *buffer, int *status); int ffi8fi8(LONGLONG *array, long ntodo, double scale, double zero, LONGLONG *buffer, int *status); int ffi2fi8(short *array, long ntodo, double scale, double zero, LONGLONG *buffer, int *status); int ffi1fi8(unsigned char *array, long ntodo, double scale, double zero, LONGLONG *buffer, int *status); int ffs1fi8(signed char *array, long ntodo, double scale, double zero, LONGLONG *buffer, int *status); int ffr4fi8(float *array, long ntodo, double scale, double zero, LONGLONG *buffer, int *status); int ffr8fi8(double *array, long ntodo, double scale, double zero, LONGLONG *buffer, int *status); int ffintfi8(int *array, long ntodo, double scale, double zero, LONGLONG *buffer, int *status); int ffu2fi8(unsigned short *array, long ntodo, double scale, double zero, LONGLONG *buffer, int *status); int ffu4fi8(unsigned long *array, long ntodo, double scale, double zero, LONGLONG *buffer, int *status); int ffuintfi8(unsigned int *array, long ntodo, double scale, double zero, LONGLONG *buffer, int *status); int ffi1fr4(unsigned char *array, long ntodo, double scale, double zero, float *buffer, int *status); int ffs1fr4(signed char *array, long ntodo, double scale, double zero, float *buffer, int *status); int ffu2fr4(unsigned short *array, long ntodo, double scale, double zero, float *buffer, int *status); int ffi2fr4(short *array, long ntodo, double scale, double zero, float *buffer, int *status); int ffu4fr4(unsigned long *array, long ntodo, double scale, double zero, float *buffer, int *status); int ffi4fr4(long *array, long ntodo, double scale, double zero, float *buffer, int *status); int ffi8fr4(LONGLONG *array, long ntodo, double scale, double zero, float *buffer, int *status); int ffuintfr4(unsigned int *array, long ntodo, double scale, double zero, float *buffer, int *status); int ffintfr4(int *array, long ntodo, double scale, double zero, float *buffer, int *status); int ffr4fr4(float *array, long ntodo, double scale, double zero, float *buffer, int *status); int ffr8fr4(double *array, long ntodo, double scale, double zero, float *buffer, int *status); int ffi1fr8(unsigned char *array, long ntodo, double scale, double zero, double *buffer, int *status); int ffs1fr8(signed char *array, long ntodo, double scale, double zero, double *buffer, int *status); int ffu2fr8(unsigned short *array, long ntodo, double scale, double zero, double *buffer, int *status); int ffi2fr8(short *array, long ntodo, double scale, double zero, double *buffer, int *status); int ffu4fr8(unsigned long *array, long ntodo, double scale, double zero, double *buffer, int *status); int ffi4fr8(long *array, long ntodo, double scale, double zero, double *buffer, int *status); int ffi8fr8(LONGLONG *array, long ntodo, double scale, double zero, double *buffer, int *status); int ffuintfr8(unsigned int *array, long ntodo, double scale, double zero, double *buffer, int *status); int ffintfr8(int *array, long ntodo, double scale, double zero, double *buffer, int *status); int ffr4fr8(float *array, long ntodo, double scale, double zero, double *buffer, int *status); int ffr8fr8(double *array, long ntodo, double scale, double zero, double *buffer, int *status); int ffi1fstr(unsigned char *input, long ntodo, double scale, double zero, char *cform, long twidth, char *output, int *status); int ffs1fstr(signed char *input, long ntodo, double scale, double zero, char *cform, long twidth, char *output, int *status); int ffu2fstr(unsigned short *input, long ntodo, double scale, double zero, char *cform, long twidth, char *output, int *status); int ffi2fstr(short *input, long ntodo, double scale, double zero, char *cform, long twidth, char *output, int *status); int ffu4fstr(unsigned long *input, long ntodo, double scale, double zero, char *cform, long twidth, char *output, int *status); int ffi4fstr(long *input, long ntodo, double scale, double zero, char *cform, long twidth, char *output, int *status); int ffi8fstr(LONGLONG *input, long ntodo, double scale, double zero, char *cform, long twidth, char *output, int *status); int ffintfstr(int *input, long ntodo, double scale, double zero, char *cform, long twidth, char *output, int *status); int ffuintfstr(unsigned int *input, long ntodo, double scale, double zero, char *cform, long twidth, char *output, int *status); int ffr4fstr(float *input, long ntodo, double scale, double zero, char *cform, long twidth, char *output, int *status); int ffr8fstr(double *input, long ntodo, double scale, double zero, char *cform, long twidth, char *output, int *status); /* the following 4 routines are VMS macros used on VAX or Alpha VMS */ void ieevpd(double *inarray, double *outarray, long *nvals); void ieevud(double *inarray, double *outarray, long *nvals); void ieevpr(float *inarray, float *outarray, long *nvals); void ieevur(float *inarray, float *outarray, long *nvals); /* routines related to the lexical parser */ int ffselect_table(fitsfile **fptr, char *outfile, char *expr, int *status); int ffiprs( fitsfile *fptr, int compressed, char *expr, int maxdim, int *datatype, long *nelem, int *naxis, long *naxes, int *status ); void ffcprs( void ); int ffcvtn( int inputType, void *input, char *undef, long ntodo, int outputType, void *nulval, void *output, int *anynull, int *status ); int parse_data( long totalrows, long offset, long firstrow, long nrows, int nCols, iteratorCol *colData, void *userPtr ); int uncompress_hkdata( fitsfile *fptr, long ntimes, double *times, int *status ); int ffffrw_work( long totalrows, long offset, long firstrow, long nrows, int nCols, iteratorCol *colData, void *userPtr ); int fits_translate_pixkeyword(char *inrec, char *outrec,char *patterns[][2], int npat, int naxis, int *colnum, int *pat_num, int *i, int *j, int *n, int *m, int *l, int *status); /* image compression routines */ int fits_write_compressed_img(fitsfile *fptr, int datatype, long *fpixel, long *lpixel, int nullcheck, void *array, void *nulval, int *status); int fits_write_compressed_pixels(fitsfile *fptr, int datatype, LONGLONG fpixel, LONGLONG npixels, int nullcheck, void *array, void *nulval, int *status); int fits_write_compressed_img_plane(fitsfile *fptr, int datatype, int bytesperpixel, long nplane, long *firstcoord, long *lastcoord, long *naxes, int nullcheck, void *array, void *nullval, long *nread, int *status); int imcomp_init_table(fitsfile *outfptr, int bitpix, int naxis,long *naxes, int writebitpix, int *status); int imcomp_calc_max_elem (int comptype, int nx, int zbitpix, int blocksize); int imcomp_copy_imheader(fitsfile *infptr, fitsfile *outfptr, int *status); int imcomp_copy_img2comp(fitsfile *infptr, fitsfile *outfptr, int *status); int imcomp_copy_comp2img(fitsfile *infptr, fitsfile *outfptr, int norec, int *status); int imcomp_copy_prime2img(fitsfile *infptr, fitsfile *outfptr, int *status); int imcomp_compress_image (fitsfile *infptr, fitsfile *outfptr, int *status); int imcomp_compress_tile (fitsfile *outfptr, long row, int datatype, void *tiledata, long tilelen, long nx, long ny, int nullcheck, void *nullval, int *status); int imcomp_nullscale(int *idata, long tilelen, int nullflagval, int nullval, double scale, double zero, int * status); int imcomp_nullvalues(int *idata, long tilelen, int nullflagval, int nullval, int * status); int imcomp_scalevalues(int *idata, long tilelen, double scale, double zero, int * status); int imcomp_nullscalefloats(float *fdata, long tilelen, int *idata, double scale, double zero, int nullcheck, float nullflagval, int nullval, int *status); int imcomp_nullfloats(float *fdata, long tilelen, int *idata, int nullcheck, float nullflagval, int nullval, int *status); int imcomp_nullscaledoubles(double *fdata, long tilelen, int *idata, double scale, double zero, int nullcheck, double nullflagval, int nullval, int *status); int imcomp_nulldoubles(double *fdata, long tilelen, int *idata, int nullcheck, double nullflagval, int nullval, int *status); /* image decompression routines */ int fits_read_compressed_img(fitsfile *fptr, int datatype, LONGLONG *fpixel,LONGLONG *lpixel,long *inc, int nullcheck, void *nulval, void *array, char *nullarray, int *anynul, int *status); int fits_read_compressed_pixels(fitsfile *fptr, int datatype, LONGLONG fpixel, LONGLONG npixels, int nullcheck, void *nulval, void *array, char *nullarray, int *anynul, int *status); int fits_read_compressed_img_plane(fitsfile *fptr, int datatype, int bytesperpixel, long nplane, LONGLONG *firstcoord, LONGLONG *lastcoord, long *inc, long *naxes, int nullcheck, void *nullval, void *array, char *nullarray, int *anynul, long *nread, int *status); int imcomp_get_compressed_image_par(fitsfile *infptr, int *status); int imcomp_decompress_tile (fitsfile *infptr, int nrow, int tilesize, int datatype, int nullcheck, void *nulval, void *buffer, char *bnullarray, int *anynul, int *status); int imcomp_copy_overlap (char *tile, int pixlen, int ndim, long *tfpixel, long *tlpixel, char *bnullarray, char *image, long *fpixel, long *lpixel, long *inc, int nullcheck, char *nullarray, int *status); int imcomp_test_overlap (int ndim, long *tfpixel, long *tlpixel, long *fpixel, long *lpixel, long *inc, int *status); int imcomp_merge_overlap (char *tile, int pixlen, int ndim, long *tfpixel, long *tlpixel, char *bnullarray, char *image, long *fpixel, long *lpixel, int nullcheck, int *status); int imcomp_decompress_img(fitsfile *infptr, fitsfile *outfptr, int datatype, int *status); int fits_quantize_float (long row, float fdata[], long nx, long ny, int nullcheck, float in_null_value, float quantize_level, int dither_method, int idata[], double *bscale, double *bzero, int *iminval, int *imaxval); int fits_quantize_double (long row, double fdata[], long nx, long ny, int nullcheck, double in_null_value, float quantize_level, int dither_method, int idata[], double *bscale, double *bzero, int *iminval, int *imaxval); int fits_rcomp(int a[], int nx, unsigned char *c, int clen,int nblock); int fits_rcomp_short(short a[], int nx, unsigned char *c, int clen,int nblock); int fits_rcomp_byte(signed char a[], int nx, unsigned char *c, int clen,int nblock); int fits_rdecomp (unsigned char *c, int clen, unsigned int array[], int nx, int nblock); int fits_rdecomp_short (unsigned char *c, int clen, unsigned short array[], int nx, int nblock); int fits_rdecomp_byte (unsigned char *c, int clen, unsigned char array[], int nx, int nblock); int pl_p2li (int *pxsrc, int xs, short *lldst, int npix); int pl_l2pi (short *ll_src, int xs, int *px_dst, int npix); int fits_init_randoms(void); int fits_unset_compression_param( fitsfile *fptr, int *status); int fits_unset_compression_request( fitsfile *fptr, int *status); int fitsio_init_lock(void); /* general driver routines */ int urltype2driver(char *urltype, int *driver); int fits_register_driver( char *prefix, int (*init)(void), int (*fitsshutdown)(void), int (*setoptions)(int option), int (*getoptions)(int *options), int (*getversion)(int *version), int (*checkfile) (char *urltype, char *infile, char *outfile), int (*fitsopen)(char *filename, int rwmode, int *driverhandle), int (*fitscreate)(char *filename, int *driverhandle), int (*fitstruncate)(int driverhandle, LONGLONG filesize), int (*fitsclose)(int driverhandle), int (*fremove)(char *filename), int (*size)(int driverhandle, LONGLONG *size), int (*flush)(int driverhandle), int (*seek)(int driverhandle, LONGLONG offset), int (*fitsread) (int driverhandle, void *buffer, long nbytes), int (*fitswrite)(int driverhandle, void *buffer, long nbytes)); /* file driver I/O routines */ int file_init(void); int file_setoptions(int options); int file_getoptions(int *options); int file_getversion(int *version); int file_shutdown(void); int file_checkfile(char *urltype, char *infile, char *outfile); int file_open(char *filename, int rwmode, int *driverhandle); int file_compress_open(char *filename, int rwmode, int *hdl); int file_openfile(char *filename, int rwmode, FILE **diskfile); int file_create(char *filename, int *driverhandle); int file_truncate(int driverhandle, LONGLONG filesize); int file_size(int driverhandle, LONGLONG *filesize); int file_close(int driverhandle); int file_remove(char *filename); int file_flush(int driverhandle); int file_seek(int driverhandle, LONGLONG offset); int file_read (int driverhandle, void *buffer, long nbytes); int file_write(int driverhandle, void *buffer, long nbytes); int file_is_compressed(char *filename); /* stream driver I/O routines */ int stream_open(char *filename, int rwmode, int *driverhandle); int stream_create(char *filename, int *driverhandle); int stream_size(int driverhandle, LONGLONG *filesize); int stream_close(int driverhandle); int stream_flush(int driverhandle); int stream_seek(int driverhandle, LONGLONG offset); int stream_read (int driverhandle, void *buffer, long nbytes); int stream_write(int driverhandle, void *buffer, long nbytes); /* memory driver I/O routines */ int mem_init(void); int mem_setoptions(int options); int mem_getoptions(int *options); int mem_getversion(int *version); int mem_shutdown(void); int mem_create(char *filename, int *handle); int mem_create_comp(char *filename, int *handle); int mem_openmem(void **buffptr, size_t *buffsize, size_t deltasize, void *(*memrealloc)(void *p, size_t newsize), int *handle); int mem_createmem(size_t memsize, int *handle); int stdin_checkfile(char *urltype, char *infile, char *outfile); int stdin_open(char *filename, int rwmode, int *handle); int stdin2mem(int hd); int stdin2file(int hd); int stdout_close(int handle); int mem_compress_openrw(char *filename, int rwmode, int *hdl); int mem_compress_open(char *filename, int rwmode, int *hdl); int mem_compress_stdin_open(char *filename, int rwmode, int *hdl); int mem_iraf_open(char *filename, int rwmode, int *hdl); int mem_rawfile_open(char *filename, int rwmode, int *hdl); int mem_size(int handle, LONGLONG *filesize); int mem_truncate(int handle, LONGLONG filesize); int mem_close_free(int handle); int mem_close_keep(int handle); int mem_close_comp(int handle); int mem_seek(int handle, LONGLONG offset); int mem_read(int hdl, void *buffer, long nbytes); int mem_write(int hdl, void *buffer, long nbytes); int mem_uncompress2mem(char *filename, FILE *diskfile, int hdl); int iraf2mem(char *filename, char **buffptr, size_t *buffsize, size_t *filesize, int *status); /* root driver I/O routines */ int root_init(void); int root_setoptions(int options); int root_getoptions(int *options); int root_getversion(int *version); int root_shutdown(void); int root_open(char *filename, int rwmode, int *driverhandle); int root_create(char *filename, int *driverhandle); int root_close(int driverhandle); int root_flush(int driverhandle); int root_seek(int driverhandle, LONGLONG offset); int root_read (int driverhandle, void *buffer, long nbytes); int root_write(int driverhandle, void *buffer, long nbytes); int root_size(int handle, LONGLONG *filesize); /* http driver I/O routines */ int http_checkfile(char *urltype, char *infile, char *outfile); int http_open(char *filename, int rwmode, int *driverhandle); int http_file_open(char *filename, int rwmode, int *driverhandle); int http_compress_open(char *filename, int rwmode, int *driverhandle); /* ftp driver I/O routines */ int ftp_checkfile(char *urltype, char *infile, char *outfile); int ftp_open(char *filename, int rwmode, int *driverhandle); int ftp_file_open(char *filename, int rwmode, int *driverhandle); int ftp_compress_open(char *filename, int rwmode, int *driverhandle); int uncompress2mem(char *filename, FILE *diskfile, char **buffptr, size_t *buffsize, void *(*mem_realloc)(void *p, size_t newsize), size_t *filesize, int *status); int uncompress2mem_from_mem( char *inmemptr, size_t inmemsize, char **buffptr, size_t *buffsize, void *(*mem_realloc)(void *p, size_t newsize), size_t *filesize, int *status); int uncompress2file(char *filename, FILE *indiskfile, FILE *outdiskfile, int *status); int compress2mem_from_mem( char *inmemptr, size_t inmemsize, char **buffptr, size_t *buffsize, void *(*mem_realloc)(void *p, size_t newsize), size_t *filesize, int *status); int compress2file_from_mem( char *inmemptr, size_t inmemsize, FILE *outdiskfile, size_t *filesize, /* O - size of file, in bytes */ int *status); #ifdef HAVE_GSIFTP /* prototypes for gsiftp driver I/O routines */ #include "drvrgsiftp.h" #endif #ifdef HAVE_SHMEM_SERVICES /* prototypes for shared memory driver I/O routines */ #include "drvrsmem.h" #endif #if defined(vms) || defined(__vms) || defined(WIN32) || defined(__WIN32__) || (defined(macintosh) && !defined(TARGET_API_MAC_CARBON)) /* A hack for nonunix machines, which lack strcasecmp and strncasecmp */ int strcasecmp (const char *s1, const char *s2 ); int strncasecmp(const char *s1, const char *s2, size_t n); #endif /* end of the entire "ifndef _FITSIO2_H" block */ #endif healpy-1.8.1/cfitsio/f77_wrap4.c0000654000175000017530000004577612272000775016764 0ustar zoncaplanck00000000000000/************************************************************************ f77_wrap1.c and f77_wrap2.c have now been split into 4 files to prevent compile-time memory errors (from expansion of compiler commands). f77_wrap1.c was split into f77_wrap1.c and f77_wrap3.c, and f77_wrap2.c was split into f77_wrap2.c and f77_wrap4.c: f77_wrap1.c contains routines operating on whole files and some utility routines. f77_wrap2.c contains routines operating on primary array, image, or column elements. f77_wrap3.c contains routines operating on headers & keywords. f77_wrap4.c contains miscellaneous routines. Peter's original comments: Together, f77_wrap1.c and f77_wrap2.c contain C wrappers for all the CFITSIO routines prototyped in fitsio.h, except for the generic datatype routines and features not supported in fortran (eg, unsigned integers), a few routines prototyped in fitsio2.h, which only a handful of FTOOLS use, plus a few obsolete FITSIO routines not present in CFITSIO. This file allows Fortran code to use the CFITSIO library instead of the FITSIO library without modification. It also gives access to new routines not present in FITSIO. Fortran FTOOLS must continue using the old routine names from FITSIO (ie, ftxxxx), but most of the C-wrappers simply redirect those calls to the corresponding CFITSIO routines (ie, ffxxxx), with appropriate parameter massaging where necessary. The main exception are read/write routines ending in j (ie, long data) which get redirected to C routines ending in k (ie, int data). This is more consistent with the default integer type in Fortran. f77_wrap1.c primarily holds routines operating on whole files and extension headers. f77_wrap2.c handle routines which read and write the data portion, plus miscellaneous extra routines. File created by Peter Wilson (HSTX), Oct-Dec. 1997 ************************************************************************/ #include "fitsio2.h" #include "f77_wrap.h" /*********************************************************************/ /* Iterator Functions */ /*********************************************************************/ /* Use a simple ellipse prototype for Fwork_fn to satisfy finicky compilers */ typedef struct { void *userData; void (*Fwork_fn)(PLONG_cfTYPE *total_n, ...); } FtnUserData; /* Declare protoypes to make C++ happy */ int Cwork_fn(long, long, long, long, int, iteratorCol *, void *); void Cffiter( int n_cols, int *units, int *colnum, char *colname[], int *datatype, int *iotype, long offset, long n_per_loop, void *Fwork_fn, void *userData, int *status); /******************************************************************/ /* Cffiter is the wrapper for CFITSIO's ffiter which takes most */ /* of its arguments via a structure, iteratorCol. This routine */ /* takes a list of arrays and converts them into a single array */ /* of type iteratorCol and passes it to CFITSIO. Because ffiter */ /* will be passing control to a Fortran work function, the C */ /* wrapper, Cwork_fn, must be passed in its place which then */ /* calls the Fortran routine after the necessary data */ /* manipulation. The Fortran routine is passed via the user- */ /* supplied parameter pointer. */ /******************************************************************/ void Cffiter( int n_cols, int *units, int *colnum, char *colname[], int *datatype, int *iotype, long offset, long n_per_loop, void *Fwork_fn, void *userData, int *status) { iteratorCol *cols; int i; FtnUserData FuserData; FuserData.Fwork_fn = (void(*)(PLONG_cfTYPE *,...))Fwork_fn; FuserData.userData = userData; cols = (iteratorCol *)malloc( n_cols*sizeof(iteratorCol) ); if( cols==NULL ) { *status = MEMORY_ALLOCATION; return; } for(i=0;iFwork_fn(&a1,&a2,&a3,&a4,&n_cols,units,colnum,datatype, iotype,repeat,&status,f->userData, ptrs[ 0], ptrs[ 1], ptrs[ 2], ptrs[ 3], ptrs[ 4], ptrs[ 5], ptrs[ 6], ptrs[ 7], ptrs[ 8], ptrs[ 9], ptrs[10], ptrs[11], ptrs[12], ptrs[13], ptrs[14], ptrs[15], ptrs[16], ptrs[17], ptrs[18], ptrs[19], ptrs[20], ptrs[21], ptrs[22], ptrs[23], ptrs[24] ); } /* Check whether there are any LOGICAL or STRING columns being outputted */ nstr=0; for( i=0;i #include #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffgpvui( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ unsigned short nulval, /* I - value for undefined pixels */ unsigned short *array, /* O - array of values that are returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Undefined elements will be set equal to NULVAL, unless NULVAL=0 in which case no checking for undefined values will be performed. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { long row; char cdummy; int nullcheck = 1; unsigned short nullvalue; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ nullvalue = nulval; /* set local variable */ fits_read_compressed_pixels(fptr, TUSHORT, firstelem, nelem, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgclui(fptr, 2, row, firstelem, nelem, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgpfui( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ unsigned short *array, /* O - array of values that are returned */ char *nularray, /* O - array of null pixel flags */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any undefined pixels in the returned array will be set = 0 and the corresponding nularray value will be set = 1. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { long row; int nullcheck = 2; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_read_compressed_pixels(fptr, TUSHORT, firstelem, nelem, nullcheck, NULL, array, nularray, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgclui(fptr, 2, row, firstelem, nelem, 1, 2, 0, array, nularray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffg2dui(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ unsigned short nulval, /* set undefined pixels equal to this */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ unsigned short *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an entire 2-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any null values in the array will be set equal to the value of nulval, unless nulval = 0 in which case no null checking will be performed. */ { /* call the 3D reading routine, with the 3rd dimension = 1 */ ffg3dui(fptr, group, nulval, ncols, naxis2, naxis1, naxis2, 1, array, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffg3dui(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ unsigned short nulval, /* set undefined pixels equal to this */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG nrows, /* I - number of rows in each plane of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ LONGLONG naxis3, /* I - FITS image NAXIS3 value */ unsigned short *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an entire 3-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any null values in the array will be set equal to the value of nulval, unless nulval = 0 in which case no null checking will be performed. */ { long tablerow, ii, jj; char cdummy; int nullcheck = 1; long inc[] = {1,1,1}; LONGLONG fpixel[] = {1,1,1}, nfits, narray; LONGLONG lpixel[3]; unsigned short nullvalue; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ lpixel[0] = ncols; lpixel[1] = nrows; lpixel[2] = naxis3; nullvalue = nulval; /* set local variable */ fits_read_compressed_img(fptr, TUSHORT, fpixel, lpixel, inc, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ tablerow=maxvalue(1,group); if (ncols == naxis1 && nrows == naxis2) /* arrays have same size? */ { /* all the image pixels are contiguous, so read all at once */ ffgclui(fptr, 2, tablerow, 1, naxis1 * naxis2 * naxis3, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } if (ncols < naxis1 || nrows < naxis2) return(*status = BAD_DIMEN); nfits = 1; /* next pixel in FITS image to read */ narray = 0; /* next pixel in output array to be filled */ /* loop over naxis3 planes in the data cube */ for (jj = 0; jj < naxis3; jj++) { /* loop over the naxis2 rows in the FITS image, */ /* reading naxis1 pixels to each row */ for (ii = 0; ii < naxis2; ii++) { if (ffgclui(fptr, 2, tablerow, nfits, naxis1, 1, 1, nulval, &array[narray], &cdummy, anynul, status) > 0) return(*status); nfits += naxis1; narray += ncols; } narray += (nrows - naxis2) * ncols; } return(*status); } /*--------------------------------------------------------------------------*/ int ffgsvui(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of the column to read (1 = 1st) */ int naxis, /* I - number of dimensions in the FITS array */ long *naxes, /* I - size of each dimension */ long *blc, /* I - 'bottom left corner' of the subsection */ long *trc, /* I - 'top right corner' of the subsection */ long *inc, /* I - increment to be applied in each dimension */ unsigned short nulval, /* I - value to set undefined pixels */ unsigned short *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read a subsection of data values from an image or a table column. This routine is set up to handle a maximum of nine dimensions. */ { long ii,i0, i1,i2,i3,i4,i5,i6,i7,i8,row,rstr,rstp,rinc; long str[9],stp[9],incr[9]; long nelem, nultyp, ninc, numcol; LONGLONG felem, dsize[10], blcll[9], trcll[9]; int hdutype, anyf; char ldummy, msg[FLEN_ERRMSG]; int nullcheck = 1; unsigned short nullvalue; if (naxis < 1 || naxis > 9) { sprintf(msg, "NAXIS = %d in call to ffgsvui is out of range", naxis); ffpmsg(msg); return(*status = BAD_DIMEN); } if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ for (ii=0; ii < naxis; ii++) { blcll[ii] = blc[ii]; trcll[ii] = trc[ii]; } nullvalue = nulval; /* set local variable */ fits_read_compressed_img(fptr, TUSHORT, blcll, trcll, inc, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* if this is a primary array, then the input COLNUM parameter should be interpreted as the row number, and we will alway read the image data from column 2 (any group parameters are in column 1). */ if (ffghdt(fptr, &hdutype, status) > 0) return(*status); if (hdutype == IMAGE_HDU) { /* this is a primary array, or image extension */ if (colnum == 0) { rstr = 1; rstp = 1; } else { rstr = colnum; rstp = colnum; } rinc = 1; numcol = 2; } else { /* this is a table, so the row info is in the (naxis+1) elements */ rstr = blc[naxis]; rstp = trc[naxis]; rinc = inc[naxis]; numcol = colnum; } nultyp = 1; if (anynul) *anynul = FALSE; i0 = 0; for (ii = 0; ii < 9; ii++) { str[ii] = 1; stp[ii] = 1; incr[ii] = 1; dsize[ii] = 1; } for (ii = 0; ii < naxis; ii++) { if (trc[ii] < blc[ii]) { sprintf(msg, "ffgsvui: illegal range specified for axis %ld", ii + 1); ffpmsg(msg); return(*status = BAD_PIX_NUM); } str[ii] = blc[ii]; stp[ii] = trc[ii]; incr[ii] = inc[ii]; dsize[ii + 1] = dsize[ii] * naxes[ii]; } if (naxis == 1 && naxes[0] == 1) { /* This is not a vector column, so read all the rows at once */ nelem = (rstp - rstr) / rinc + 1; ninc = rinc; rstp = rstr; } else { /* have to read each row individually, in all dimensions */ nelem = (stp[0] - str[0]) / inc[0] + 1; ninc = incr[0]; } for (row = rstr; row <= rstp; row += rinc) { for (i8 = str[8]; i8 <= stp[8]; i8 += incr[8]) { for (i7 = str[7]; i7 <= stp[7]; i7 += incr[7]) { for (i6 = str[6]; i6 <= stp[6]; i6 += incr[6]) { for (i5 = str[5]; i5 <= stp[5]; i5 += incr[5]) { for (i4 = str[4]; i4 <= stp[4]; i4 += incr[4]) { for (i3 = str[3]; i3 <= stp[3]; i3 += incr[3]) { for (i2 = str[2]; i2 <= stp[2]; i2 += incr[2]) { for (i1 = str[1]; i1 <= stp[1]; i1 += incr[1]) { felem=str[0] + (i1 - 1) * dsize[1] + (i2 - 1) * dsize[2] + (i3 - 1) * dsize[3] + (i4 - 1) * dsize[4] + (i5 - 1) * dsize[5] + (i6 - 1) * dsize[6] + (i7 - 1) * dsize[7] + (i8 - 1) * dsize[8]; if ( ffgclui(fptr, numcol, row, felem, nelem, ninc, nultyp, nulval, &array[i0], &ldummy, &anyf, status) > 0) return(*status); if (anyf && anynul) *anynul = TRUE; i0 += nelem; } } } } } } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffgsfui(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of the column to read (1 = 1st) */ int naxis, /* I - number of dimensions in the FITS array */ long *naxes, /* I - size of each dimension */ long *blc, /* I - 'bottom left corner' of the subsection */ long *trc, /* I - 'top right corner' of the subsection */ long *inc, /* I - increment to be applied in each dimension */ unsigned short *array, /* O - array to be filled and returned */ char *flagval, /* O - set to 1 if corresponding value is null */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read a subsection of data values from an image or a table column. This routine is set up to handle a maximum of nine dimensions. */ { long ii,i0, i1,i2,i3,i4,i5,i6,i7,i8,row,rstr,rstp,rinc; long str[9],stp[9],incr[9],dsize[10]; LONGLONG blcll[9], trcll[9]; long felem, nelem, nultyp, ninc, numcol; int hdutype, anyf; unsigned short nulval = 0; char msg[FLEN_ERRMSG]; int nullcheck = 2; if (naxis < 1 || naxis > 9) { sprintf(msg, "NAXIS = %d in call to ffgsvi is out of range", naxis); ffpmsg(msg); return(*status = BAD_DIMEN); } if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ for (ii=0; ii < naxis; ii++) { blcll[ii] = blc[ii]; trcll[ii] = trc[ii]; } fits_read_compressed_img(fptr, TUSHORT, blcll, trcll, inc, nullcheck, NULL, array, flagval, anynul, status); return(*status); } /* if this is a primary array, then the input COLNUM parameter should be interpreted as the row number, and we will alway read the image data from column 2 (any group parameters are in column 1). */ if (ffghdt(fptr, &hdutype, status) > 0) return(*status); if (hdutype == IMAGE_HDU) { /* this is a primary array, or image extension */ if (colnum == 0) { rstr = 1; rstp = 1; } else { rstr = colnum; rstp = colnum; } rinc = 1; numcol = 2; } else { /* this is a table, so the row info is in the (naxis+1) elements */ rstr = blc[naxis]; rstp = trc[naxis]; rinc = inc[naxis]; numcol = colnum; } nultyp = 2; if (anynul) *anynul = FALSE; i0 = 0; for (ii = 0; ii < 9; ii++) { str[ii] = 1; stp[ii] = 1; incr[ii] = 1; dsize[ii] = 1; } for (ii = 0; ii < naxis; ii++) { if (trc[ii] < blc[ii]) { sprintf(msg, "ffgsvi: illegal range specified for axis %ld", ii + 1); ffpmsg(msg); return(*status = BAD_PIX_NUM); } str[ii] = blc[ii]; stp[ii] = trc[ii]; incr[ii] = inc[ii]; dsize[ii + 1] = dsize[ii] * naxes[ii]; } if (naxis == 1 && naxes[0] == 1) { /* This is not a vector column, so read all the rows at once */ nelem = (rstp - rstr) / rinc + 1; ninc = rinc; rstp = rstr; } else { /* have to read each row individually, in all dimensions */ nelem = (stp[0] - str[0]) / inc[0] + 1; ninc = incr[0]; } for (row = rstr; row <= rstp; row += rinc) { for (i8 = str[8]; i8 <= stp[8]; i8 += incr[8]) { for (i7 = str[7]; i7 <= stp[7]; i7 += incr[7]) { for (i6 = str[6]; i6 <= stp[6]; i6 += incr[6]) { for (i5 = str[5]; i5 <= stp[5]; i5 += incr[5]) { for (i4 = str[4]; i4 <= stp[4]; i4 += incr[4]) { for (i3 = str[3]; i3 <= stp[3]; i3 += incr[3]) { for (i2 = str[2]; i2 <= stp[2]; i2 += incr[2]) { for (i1 = str[1]; i1 <= stp[1]; i1 += incr[1]) { felem=str[0] + (i1 - 1) * dsize[1] + (i2 - 1) * dsize[2] + (i3 - 1) * dsize[3] + (i4 - 1) * dsize[4] + (i5 - 1) * dsize[5] + (i6 - 1) * dsize[6] + (i7 - 1) * dsize[7] + (i8 - 1) * dsize[8]; if ( ffgclui(fptr, numcol, row, felem, nelem, ninc, nultyp, nulval, &array[i0], &flagval[i0], &anyf, status) > 0) return(*status); if (anyf && anynul) *anynul = TRUE; i0 += nelem; } } } } } } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffggpui( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ long firstelem, /* I - first vector element to read (1 = 1st) */ long nelem, /* I - number of values to read */ unsigned short *array, /* O - array of values that are returned */ int *status) /* IO - error status */ /* Read an array of group parameters from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). */ { long row; int idummy; char cdummy; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgclui(fptr, 1, row, firstelem, nelem, 1, 1, 0, array, &cdummy, &idummy, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcvui(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ unsigned short nulval, /* I - value for null pixels */ unsigned short *array, /* O - array of values that are read */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Any undefined pixels will be set equal to the value of 'nulval' unless nulval = 0 in which case no checks for undefined pixels will be made. */ { char cdummy; ffgclui(fptr, colnum, firstrow, firstelem, nelem, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcfui(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ unsigned short *array, /* O - array of values that are read */ char *nularray, /* O - array of flags: 1 if null pixel; else 0 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Nularray will be set = 1 if the corresponding array pixel is undefined, otherwise nularray will = 0. */ { unsigned short dummy = 0; ffgclui(fptr, colnum, firstrow, firstelem, nelem, 1, 2, dummy, array, nularray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgclui( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ long elemincre, /* I - pixel increment; e.g., 2 = every other */ int nultyp, /* I - null value handling code: */ /* 1: set undefined pixels = nulval */ /* 2: set nularray=1 for undefined pixels */ unsigned short nulval, /* I - value for null pixels if nultyp = 1 */ unsigned short *array, /* O - array of values that are read */ char *nularray, /* O - array of flags = 1 if nultyp = 2 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. The column number may refer to a real column in an ASCII or binary table, or it may refer be a virtual column in a 1 or more grouped FITS primary array or image extension. FITSIO treats a primary array as a binary table with 2 vector columns: the first column contains the group parameters (often with length = 0) and the second column contains the array of image pixels. Each row of the table represents a group in the case of multigroup FITS images. The output array of values will be converted from the datatype of the column and will be scaled by the FITS TSCALn and TZEROn values if necessary. */ { double scale, zero, power = 1., dtemp; int tcode, maxelem2, hdutype, xcode, decimals; long twidth, incre; long ii, xwidth, ntodo; int nulcheck; LONGLONG repeat, startpos, elemnum, readptr, tnull; LONGLONG rowlen, rownum, remain, next, rowincre, maxelem; char tform[20]; char message[81]; char snull[20]; /* the FITS null value if reading from ASCII table */ double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */ void *buffer; if (*status > 0 || nelem == 0) /* inherit input status value if > 0 */ return(*status); buffer = cbuff; if (anynul) *anynul = 0; if (nultyp == 2) memset(nularray, 0, (size_t) nelem); /* initialize nullarray */ /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if ( ffgcprll( fptr, colnum, firstrow, firstelem, nelem, 0, &scale, &zero, tform, &twidth, &tcode, &maxelem2, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0 ) return(*status); maxelem = maxelem2; incre *= elemincre; /* multiply incre to just get every nth pixel */ if (tcode == TSTRING) /* setup for ASCII tables */ { /* get the number of implied decimal places if no explicit decmal point */ ffasfm(tform, &xcode, &xwidth, &decimals, status); for(ii = 0; ii < decimals; ii++) power *= 10.; } /*------------------------------------------------------------------*/ /* Decide whether to check for null values in the input FITS file: */ /*------------------------------------------------------------------*/ nulcheck = nultyp; /* by default check for null values in the FITS file */ if (nultyp == 1 && nulval == 0) nulcheck = 0; /* calling routine does not want to check for nulls */ else if (tcode%10 == 1 && /* if reading an integer column, and */ tnull == NULL_UNDEFINED) /* if a null value is not defined, */ nulcheck = 0; /* then do not check for null values. */ else if (tcode == TSHORT && (tnull > SHRT_MAX || tnull < SHRT_MIN) ) nulcheck = 0; /* Impossible null value */ else if (tcode == TBYTE && (tnull > 255 || tnull < 0) ) nulcheck = 0; /* Impossible null value */ else if (tcode == TSTRING && snull[0] == ASCII_NULL_UNDEFINED) nulcheck = 0; /*----------------------------------------------------------------------*/ /* If FITS column and output data array have same datatype, then we do */ /* not need to use a temporary buffer to store intermediate datatype. */ /*----------------------------------------------------------------------*/ if (tcode == TSHORT) /* Special Case: */ { /* no type convertion required, so read */ /* data directly into output buffer. */ if (nelem < (LONGLONG)INT32_MAX/2) { maxelem = nelem; } else { maxelem = INT32_MAX/2; } } /*---------------------------------------------------------------------*/ /* Now read the pixels from the FITS column. If the column does not */ /* have the same datatype as the output array, then we have to read */ /* the raw values into a temporary buffer (of limited size). In */ /* the case of a vector colum read only 1 vector of values at a time */ /* then skip to the next row if more values need to be read. */ /* After reading the raw values, then call the fffXXYY routine to (1) */ /* test for undefined values, (2) convert the datatype if necessary, */ /* and (3) scale the values by the FITS TSCALn and TZEROn linear */ /* scaling parameters. */ /*---------------------------------------------------------------------*/ remain = nelem; /* remaining number of values to read */ next = 0; /* next element in array to be read */ rownum = 0; /* row number, relative to firstrow */ while (remain) { /* limit the number of pixels to read at one time to the number that will fit in the buffer or to the number of pixels that remain in the current vector, which ever is smaller. */ ntodo = (long) minvalue(remain, maxelem); ntodo = (long) minvalue(ntodo, ((repeat - elemnum - 1)/elemincre +1)); readptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * (incre / elemincre)); switch (tcode) { case (TSHORT): ffgi2b(fptr, readptr, ntodo, incre, (short *) &array[next], status); fffi2u2((short *) &array[next], ntodo, scale, zero, nulcheck, (short) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TLONGLONG): ffgi8b(fptr, readptr, ntodo, incre, (long *) buffer, status); fffi8u2( (LONGLONG *) buffer, ntodo, scale, zero, nulcheck, tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TBYTE): ffgi1b(fptr, readptr, ntodo, incre, (unsigned char *) buffer, status); fffi1u2((unsigned char *) buffer, ntodo, scale, zero, nulcheck, (unsigned char) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TLONG): ffgi4b(fptr, readptr, ntodo, incre, (INT32BIT *) buffer, status); fffi4u2((INT32BIT *) buffer, ntodo, scale, zero, nulcheck, (INT32BIT) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TFLOAT): ffgr4b(fptr, readptr, ntodo, incre, (float *) buffer, status); fffr4u2((float *) buffer, ntodo, scale, zero, nulcheck, nulval, &nularray[next], anynul, &array[next], status); break; case (TDOUBLE): ffgr8b(fptr, readptr, ntodo, incre, (double *) buffer, status); fffr8u2((double *) buffer, ntodo, scale, zero, nulcheck, nulval, &nularray[next], anynul, &array[next], status); break; case (TSTRING): ffmbyt(fptr, readptr, REPORT_EOF, status); if (incre == twidth) /* contiguous bytes */ ffgbyt(fptr, ntodo * twidth, buffer, status); else ffgbytoff(fptr, twidth, ntodo, incre - twidth, buffer, status); fffstru2((char *) buffer, ntodo, scale, zero, twidth, power, nulcheck, snull, nulval, &nularray[next], anynul, &array[next], status); break; default: /* error trap for invalid column format */ sprintf(message, "Cannot read numbers from column %d which has format %s", colnum, tform); ffpmsg(message); if (hdutype == ASCII_TBL) return(*status = BAD_ATABLE_FORMAT); else return(*status = BAD_BTABLE_FORMAT); } /* End of switch block */ /*-------------------------*/ /* Check for fatal error */ /*-------------------------*/ if (*status > 0) /* test for error during previous read operation */ { dtemp = (double) next; if (hdutype > 0) sprintf(message, "Error reading elements %.0f thru %.0f from column %d (ffgclui).", dtemp+1., dtemp+ntodo, colnum); else sprintf(message, "Error reading elements %.0f thru %.0f from image (ffgclui).", dtemp+1., dtemp+ntodo); ffpmsg(message); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain -= ntodo; if (remain) { next += ntodo; elemnum = elemnum + (ntodo * elemincre); if (elemnum >= repeat) /* completed a row; start on later row */ { rowincre = elemnum / repeat; rownum += rowincre; elemnum = elemnum - (rowincre * repeat); } } } /* End of main while Loop */ /*--------------------------------*/ /* check for numerical overflow */ /*--------------------------------*/ if (*status == OVERFLOW_ERR) { ffpmsg( "Numerical overflow during type conversion while reading FITS data."); *status = NUM_OVERFLOW; } return(*status); } /*--------------------------------------------------------------------------*/ int fffi1u2(unsigned char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ unsigned char tnull, /* I - value of FITS TNULLn keyword if any */ unsigned short nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ unsigned short *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) output[ii] = (unsigned short) input[ii]; /* copy input */ } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DUSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = (unsigned short) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DUSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi2u2(short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ short tnull, /* I - value of FITS TNULLn keyword if any */ unsigned short nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ unsigned short *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 32768.) { /* Instead of adding 32768, it is more efficient */ /* to just flip the sign bit with the XOR operator */ for (ii = 0; ii < ntodo; ii++) output[ii] = ( *(unsigned short *) &input[ii] ) ^ 0x8000; } else if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < 0) { *status = OVERFLOW_ERR; output[ii] = 0; } else output[ii] = (unsigned short) input[ii]; /* copy input */ } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DUSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 32768.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = ( *(unsigned short *) &input[ii] ) ^ 0x8000; } } else if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else if (input[ii] < 0) { *status = OVERFLOW_ERR; output[ii] = 0; } else output[ii] = (unsigned short) input[ii]; /* copy input */ } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DUSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi4u2(INT32BIT *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ INT32BIT tnull, /* I - value of FITS TNULLn keyword if any */ unsigned short nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ unsigned short *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < 0) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > USHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DUSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { if (input[ii] < 0) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > USHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DUSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi8u2(LONGLONG *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ LONGLONG tnull, /* I - value of FITS TNULLn keyword if any */ unsigned short nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ unsigned short *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < 0) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > USHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DUSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { if (input[ii] < 0) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > USHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DUSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffr4u2(float *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ unsigned short nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ unsigned short *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to NaN. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; short *sptr, iret; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < DUSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > DUSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DUSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) dvalue; } } } else /* must check for null values */ { sptr = (short *) input; #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS sptr++; /* point to MSBs */ #endif if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++, sptr += 2) { if (0 != (iret = fnan(*sptr) ) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ output[ii] = 0; } else { if (input[ii] < DUSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > DUSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++, sptr += 2) { if (0 != (iret = fnan(*sptr) ) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ { if (zero < DUSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (zero > DUSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) zero; } } else { dvalue = input[ii] * scale + zero; if (dvalue < DUSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffr8u2(double *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ unsigned short nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ unsigned short *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to NaN. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; short *sptr, iret; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < DUSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > DUSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DUSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) dvalue; } } } else /* must check for null values */ { sptr = (short *) input; #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS sptr += 3; /* point to MSBs */ #endif if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++, sptr += 4) { if (0 != (iret = dnan(*sptr)) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ output[ii] = 0; } else { if (input[ii] < DUSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > DUSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++, sptr += 4) { if (0 != (iret = dnan(*sptr)) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ { if (zero < DUSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (zero > DUSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) zero; } } else { dvalue = input[ii] * scale + zero; if (dvalue < DUSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffstru2(char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ long twidth, /* I - width of each substring of chars */ double implipower, /* I - power of 10 of implied decimal */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ char *snull, /* I - value of FITS null string, if any */ unsigned short nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ unsigned short *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to snull. If nullcheck= 0, then no special checking for nulls is performed. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { int nullen; long ii; double dvalue; char *cstring, message[81]; char *cptr, *tpos; char tempstore, chrzero = '0'; double val, power; int exponent, sign, esign, decpt; nullen = strlen(snull); cptr = input; /* pointer to start of input string */ for (ii = 0; ii < ntodo; ii++) { cstring = cptr; /* temporarily insert a null terminator at end of the string */ tpos = cptr + twidth; tempstore = *tpos; *tpos = 0; /* check if null value is defined, and if the */ /* column string is identical to the null string */ if (snull[0] != ASCII_NULL_UNDEFINED && !strncmp(snull, cptr, nullen) ) { if (nullcheck) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } cptr += twidth; } else { /* value is not the null value, so decode it */ /* remove any embedded blank characters from the string */ decpt = 0; sign = 1; val = 0.; power = 1.; exponent = 0; esign = 1; while (*cptr == ' ') /* skip leading blanks */ cptr++; if (*cptr == '-' || *cptr == '+') /* check for leading sign */ { if (*cptr == '-') sign = -1; cptr++; while (*cptr == ' ') /* skip blanks between sign and value */ cptr++; } while (*cptr >= '0' && *cptr <= '9') { val = val * 10. + *cptr - chrzero; /* accumulate the value */ cptr++; while (*cptr == ' ') /* skip embedded blanks in the value */ cptr++; } if (*cptr == '.' || *cptr == ',') /* check for decimal point */ { decpt = 1; /* set flag to show there was a decimal point */ cptr++; while (*cptr == ' ') /* skip any blanks */ cptr++; while (*cptr >= '0' && *cptr <= '9') { val = val * 10. + *cptr - chrzero; /* accumulate the value */ power = power * 10.; cptr++; while (*cptr == ' ') /* skip embedded blanks in the value */ cptr++; } } if (*cptr == 'E' || *cptr == 'D') /* check for exponent */ { cptr++; while (*cptr == ' ') /* skip blanks */ cptr++; if (*cptr == '-' || *cptr == '+') /* check for exponent sign */ { if (*cptr == '-') esign = -1; cptr++; while (*cptr == ' ') /* skip blanks between sign and exp */ cptr++; } while (*cptr >= '0' && *cptr <= '9') { exponent = exponent * 10 + *cptr - chrzero; /* accumulate exp */ cptr++; while (*cptr == ' ') /* skip embedded blanks */ cptr++; } } if (*cptr != 0) /* should end up at the null terminator */ { sprintf(message, "Cannot read number from ASCII table"); ffpmsg(message); sprintf(message, "Column field = %s.", cstring); ffpmsg(message); /* restore the char that was overwritten by the null */ *tpos = tempstore; return(*status = BAD_C2D); } if (!decpt) /* if no explicit decimal, use implied */ power = implipower; dvalue = (sign * val / power) * pow(10., (double) (esign * exponent)); dvalue = dvalue * scale + zero; /* apply the scaling */ if (dvalue < DUSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = USHRT_MAX; } else output[ii] = (unsigned short) dvalue; } /* restore the char that was overwritten by the null */ *tpos = tempstore; } return(*status); } healpy-1.8.1/cfitsio/cookbook.c0000654000175000017530000005254212272000775017037 0ustar zoncaplanck00000000000000#include #include #include /* Every program which uses the CFITSIO interface must include the the fitsio.h header file. This contains the prototypes for all the routines and defines the error status values and other symbolic constants used in the interface. */ #include "fitsio.h" int main( void ); void writeimage( void ); void writeascii( void ); void writebintable( void ); void copyhdu( void ); void selectrows( void ); void readheader( void ); void readimage( void ); void readtable( void ); void printerror( int status); int main() { /************************************************************************* This is a simple main program that calls the following routines: writeimage - write a FITS primary array image writeascii - write a FITS ASCII table extension writebintable - write a FITS binary table extension copyhdu - copy a header/data unit from one FITS file to another selectrows - copy selected row from one HDU to another readheader - read and print the header keywords in every extension readimage - read a FITS image and compute the min and max value readtable - read columns of data from ASCII and binary tables **************************************************************************/ writeimage(); writeascii(); writebintable(); copyhdu(); selectrows(); readheader(); readimage(); readtable(); printf("\nAll the cfitsio cookbook routines ran successfully.\n"); return(0); } /*--------------------------------------------------------------------------*/ void writeimage( void ) /******************************************************/ /* Create a FITS primary array containing a 2-D image */ /******************************************************/ { fitsfile *fptr; /* pointer to the FITS file, defined in fitsio.h */ int status, ii, jj; long fpixel, nelements, exposure; unsigned short *array[200]; /* initialize FITS image parameters */ char filename[] = "atestfil.fit"; /* name for new FITS file */ int bitpix = USHORT_IMG; /* 16-bit unsigned short pixel values */ long naxis = 2; /* 2-dimensional image */ long naxes[2] = { 300, 200 }; /* image is 300 pixels wide by 200 rows */ /* allocate memory for the whole image */ array[0] = (unsigned short *)malloc( naxes[0] * naxes[1] * sizeof( unsigned short ) ); /* initialize pointers to the start of each row of the image */ for( ii=1; ii 0) { nbuffer = npixels; if (npixels > buffsize) nbuffer = buffsize; /* read as many pixels as will fit in buffer */ /* Note that even though the FITS images contains unsigned integer */ /* pixel values (or more accurately, signed integer pixels with */ /* a bias of 32768), this routine is reading the values into a */ /* float array. Cfitsio automatically performs the datatype */ /* conversion in cases like this. */ if ( fits_read_img(fptr, TFLOAT, fpixel, nbuffer, &nullval, buffer, &anynull, &status) ) printerror( status ); for (ii = 0; ii < nbuffer; ii++) { if ( buffer[ii] < datamin ) datamin = buffer[ii]; if ( buffer[ii] > datamax ) datamax = buffer[ii]; } npixels -= nbuffer; /* increment remaining number of pixels */ fpixel += nbuffer; /* next pixel to be read in image */ } printf("\nMin and max image pixels = %.0f, %.0f\n", datamin, datamax); if ( fits_close_file(fptr, &status) ) printerror( status ); return; } /*--------------------------------------------------------------------------*/ void readtable( void ) /************************************************************/ /* read and print data values from an ASCII or binary table */ /************************************************************/ { fitsfile *fptr; /* pointer to the FITS file, defined in fitsio.h */ int status, hdunum, hdutype, nfound, anynull, ii; long frow, felem, nelem, longnull, dia[6]; float floatnull, den[6]; char strnull[10], *name[6], *ttype[3]; char filename[] = "atestfil.fit"; /* name of existing FITS file */ status = 0; if ( fits_open_file(&fptr, filename, READONLY, &status) ) printerror( status ); for (ii = 0; ii < 3; ii++) /* allocate space for the column labels */ ttype[ii] = (char *) malloc(FLEN_VALUE); /* max label length = 69 */ for (ii = 0; ii < 6; ii++) /* allocate space for string column value */ name[ii] = (char *) malloc(10); for (hdunum = 2; hdunum <= 3; hdunum++) /*read ASCII, then binary table */ { /* move to the HDU */ if ( fits_movabs_hdu(fptr, hdunum, &hdutype, &status) ) printerror( status ); if (hdutype == ASCII_TBL) printf("\nReading ASCII table in HDU %d:\n", hdunum); else if (hdutype == BINARY_TBL) printf("\nReading binary table in HDU %d:\n", hdunum); else { printf("Error: this HDU is not an ASCII or binary table\n"); printerror( status ); } /* read the column names from the TTYPEn keywords */ fits_read_keys_str(fptr, "TTYPE", 1, 3, ttype, &nfound, &status); printf(" Row %10s %10s %10s\n", ttype[0], ttype[1], ttype[2]); frow = 1; felem = 1; nelem = 6; strcpy(strnull, " "); longnull = 0; floatnull = 0.; /* read the columns */ fits_read_col(fptr, TSTRING, 1, frow, felem, nelem, strnull, name, &anynull, &status); fits_read_col(fptr, TLONG, 2, frow, felem, nelem, &longnull, dia, &anynull, &status); fits_read_col(fptr, TFLOAT, 3, frow, felem, nelem, &floatnull, den, &anynull, &status); for (ii = 0; ii < 6; ii++) printf("%5d %10s %10ld %10.2f\n", ii + 1, name[ii], dia[ii], den[ii]); } for (ii = 0; ii < 3; ii++) /* free the memory for the column labels */ free( ttype[ii] ); for (ii = 0; ii < 6; ii++) /* free the memory for the string column */ free( name[ii] ); if ( fits_close_file(fptr, &status) ) printerror( status ); return; } /*--------------------------------------------------------------------------*/ void printerror( int status) { /*****************************************************/ /* Print out cfitsio error messages and exit program */ /*****************************************************/ if (status) { fits_report_error(stderr, status); /* print error report */ exit( status ); /* terminate the program, returning error status */ } return; } healpy-1.8.1/cfitsio/getcol.c0000654000175000017530000011541412272000775016504 0ustar zoncaplanck00000000000000 /* This file, getcol.c, contains routines that read data elements from */ /* a FITS image or table. There are generic datatype routines. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffgpxv( fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the value */ long *firstpix, /* I - coord of first pixel to read (1s based) */ LONGLONG nelem, /* I - number of values to read */ void *nulval, /* I - value for undefined pixels */ void *array, /* O - array of values that are returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. The datatype of the input array is defined by the 2nd argument. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Undefined elements will be set equal to NULVAL, unless NULVAL=0 in which case no checking for undefined values will be performed. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { LONGLONG tfirstpix[99]; int naxis, ii; if (*status > 0 || nelem == 0) /* inherit input status value if > 0 */ return(*status); /* get the size of the image */ ffgidm(fptr, &naxis, status); for (ii=0; ii < naxis; ii++) tfirstpix[ii] = firstpix[ii]; ffgpxvll(fptr, datatype, tfirstpix, nelem, nulval, array, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgpxvll( fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the value */ LONGLONG *firstpix, /* I - coord of first pixel to read (1s based) */ LONGLONG nelem, /* I - number of values to read */ void *nulval, /* I - value for undefined pixels */ void *array, /* O - array of values that are returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. The datatype of the input array is defined by the 2nd argument. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Undefined elements will be set equal to NULVAL, unless NULVAL=0 in which case no checking for undefined values will be performed. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { int naxis, ii; char cdummy; int nullcheck = 1; LONGLONG naxes[9], trc[9]= {1,1,1,1,1,1,1,1,1}; long inc[9]= {1,1,1,1,1,1,1,1,1}; LONGLONG dimsize = 1, firstelem; if (*status > 0 || nelem == 0) /* inherit input status value if > 0 */ return(*status); /* get the size of the image */ ffgidm(fptr, &naxis, status); ffgiszll(fptr, 9, naxes, status); if (naxis == 0 || naxes[0] == 0) { *status = BAD_DIMEN; return(*status); } /* calculate the position of the first element in the array */ firstelem = 0; for (ii=0; ii < naxis; ii++) { firstelem += ((firstpix[ii] - 1) * dimsize); dimsize *= naxes[ii]; trc[ii] = firstpix[ii]; } firstelem++; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ /* test for special case of reading an integral number of */ /* rows in a 2D or 3D image (which includes reading the whole image */ if (naxis > 1 && naxis < 4 && firstpix[0] == 1 && (nelem / naxes[0]) * naxes[0] == nelem) { /* calculate coordinate of last pixel */ trc[0] = naxes[0]; /* reading whole rows */ trc[1] = firstpix[1] + (nelem / naxes[0] - 1); while (trc[1] > naxes[1]) { trc[1] = trc[1] - naxes[1]; trc[2] = trc[2] + 1; /* increment to next plane of cube */ } fits_read_compressed_img(fptr, datatype, firstpix, trc, inc, 1, nulval, array, NULL, anynul, status); } else { fits_read_compressed_pixels(fptr, datatype, firstelem, nelem, nullcheck, nulval, array, NULL, anynul, status); } return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (datatype == TBYTE) { if (nulval == 0) ffgclb(fptr, 2, 1, firstelem, nelem, 1, 1, 0, (unsigned char *) array, &cdummy, anynul, status); else ffgclb(fptr, 2, 1, firstelem, nelem, 1, 1, *(unsigned char *) nulval, (unsigned char *) array, &cdummy, anynul, status); } else if (datatype == TSBYTE) { if (nulval == 0) ffgclsb(fptr, 2, 1, firstelem, nelem, 1, 1, 0, (signed char *) array, &cdummy, anynul, status); else ffgclsb(fptr, 2, 1, firstelem, nelem, 1, 1, *(signed char *) nulval, (signed char *) array, &cdummy, anynul, status); } else if (datatype == TUSHORT) { if (nulval == 0) ffgclui(fptr, 2, 1, firstelem, nelem, 1, 1, 0, (unsigned short *) array, &cdummy, anynul, status); else ffgclui(fptr, 2, 1, firstelem, nelem, 1, 1, *(unsigned short *) nulval, (unsigned short *) array, &cdummy, anynul, status); } else if (datatype == TSHORT) { if (nulval == 0) ffgcli(fptr, 2, 1, firstelem, nelem, 1, 1, 0, (short *) array, &cdummy, anynul, status); else ffgcli(fptr, 2, 1, firstelem, nelem, 1, 1, *(short *) nulval, (short *) array, &cdummy, anynul, status); } else if (datatype == TUINT) { if (nulval == 0) ffgcluk(fptr, 2, 1, firstelem, nelem, 1, 1, 0, (unsigned int *) array, &cdummy, anynul, status); else ffgcluk(fptr, 2, 1, firstelem, nelem, 1, 1, *(unsigned int *) nulval, (unsigned int *) array, &cdummy, anynul, status); } else if (datatype == TINT) { if (nulval == 0) ffgclk(fptr, 2, 1, firstelem, nelem, 1, 1, 0, (int *) array, &cdummy, anynul, status); else ffgclk(fptr, 2, 1, firstelem, nelem, 1, 1, *(int *) nulval, (int *) array, &cdummy, anynul, status); } else if (datatype == TULONG) { if (nulval == 0) ffgcluj(fptr, 2, 1, firstelem, nelem, 1, 1, 0, (unsigned long *) array, &cdummy, anynul, status); else ffgcluj(fptr, 2, 1, firstelem, nelem, 1, 1, *(unsigned long *) nulval, (unsigned long *) array, &cdummy, anynul, status); } else if (datatype == TLONG) { if (nulval == 0) ffgclj(fptr, 2, 1, firstelem, nelem, 1, 1, 0, (long *) array, &cdummy, anynul, status); else ffgclj(fptr, 2, 1, firstelem, nelem, 1, 1, *(long *) nulval, (long *) array, &cdummy, anynul, status); } else if (datatype == TLONGLONG) { if (nulval == 0) ffgcljj(fptr, 2, 1, firstelem, nelem, 1, 1, 0, (LONGLONG *) array, &cdummy, anynul, status); else ffgcljj(fptr, 2, 1, firstelem, nelem, 1, 1, *(LONGLONG *) nulval, (LONGLONG *) array, &cdummy, anynul, status); } else if (datatype == TFLOAT) { if (nulval == 0) ffgcle(fptr, 2, 1, firstelem, nelem, 1, 1, 0, (float *) array, &cdummy, anynul, status); else ffgcle(fptr, 2, 1, firstelem, nelem, 1, 1, *(float *) nulval, (float *) array, &cdummy, anynul, status); } else if (datatype == TDOUBLE) { if (nulval == 0) ffgcld(fptr, 2, 1, firstelem, nelem, 1, 1, 0, (double *) array, &cdummy, anynul, status); else ffgcld(fptr, 2, 1, firstelem, nelem, 1, 1, *(double *) nulval, (double *) array, &cdummy, anynul, status); } else *status = BAD_DATATYPE; return(*status); } /*--------------------------------------------------------------------------*/ int ffgpxf( fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the value */ long *firstpix, /* I - coord of first pixel to read (1s based) */ LONGLONG nelem, /* I - number of values to read */ void *array, /* O - array of values that are returned */ char *nullarray, /* O - returned array of null value flags */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. The datatype of the input array is defined by the 2nd argument. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). The nullarray values will = 1 if the corresponding array value is null. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { LONGLONG tfirstpix[99]; int naxis, ii; if (*status > 0 || nelem == 0) /* inherit input status value if > 0 */ return(*status); /* get the size of the image */ ffgidm(fptr, &naxis, status); for (ii=0; ii < naxis; ii++) tfirstpix[ii] = firstpix[ii]; ffgpxfll(fptr, datatype, tfirstpix, nelem, array, nullarray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgpxfll( fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the value */ LONGLONG *firstpix, /* I - coord of first pixel to read (1s based) */ LONGLONG nelem, /* I - number of values to read */ void *array, /* O - array of values that are returned */ char *nullarray, /* O - returned array of null value flags */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. The datatype of the input array is defined by the 2nd argument. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). The nullarray values will = 1 if the corresponding array value is null. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { int naxis, ii; int nullcheck = 2; LONGLONG naxes[9]; LONGLONG dimsize = 1, firstelem; if (*status > 0 || nelem == 0) /* inherit input status value if > 0 */ return(*status); /* get the size of the image */ ffgidm(fptr, &naxis, status); ffgiszll(fptr, 9, naxes, status); /* calculate the position of the first element in the array */ firstelem = 0; for (ii=0; ii < naxis; ii++) { firstelem += ((firstpix[ii] - 1) * dimsize); dimsize *= naxes[ii]; } firstelem++; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_read_compressed_pixels(fptr, datatype, firstelem, nelem, nullcheck, NULL, array, nullarray, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (datatype == TBYTE) { ffgclb(fptr, 2, 1, firstelem, nelem, 1, 2, 0, (unsigned char *) array, nullarray, anynul, status); } else if (datatype == TSBYTE) { ffgclsb(fptr, 2, 1, firstelem, nelem, 1, 2, 0, (signed char *) array, nullarray, anynul, status); } else if (datatype == TUSHORT) { ffgclui(fptr, 2, 1, firstelem, nelem, 1, 2, 0, (unsigned short *) array, nullarray, anynul, status); } else if (datatype == TSHORT) { ffgcli(fptr, 2, 1, firstelem, nelem, 1, 2, 0, (short *) array, nullarray, anynul, status); } else if (datatype == TUINT) { ffgcluk(fptr, 2, 1, firstelem, nelem, 1, 2, 0, (unsigned int *) array, nullarray, anynul, status); } else if (datatype == TINT) { ffgclk(fptr, 2, 1, firstelem, nelem, 1, 2, 0, (int *) array, nullarray, anynul, status); } else if (datatype == TULONG) { ffgcluj(fptr, 2, 1, firstelem, nelem, 1, 2, 0, (unsigned long *) array, nullarray, anynul, status); } else if (datatype == TLONG) { ffgclj(fptr, 2, 1, firstelem, nelem, 1, 2, 0, (long *) array, nullarray, anynul, status); } else if (datatype == TLONGLONG) { ffgcljj(fptr, 2, 1, firstelem, nelem, 1, 2, 0, (LONGLONG *) array, nullarray, anynul, status); } else if (datatype == TFLOAT) { ffgcle(fptr, 2, 1, firstelem, nelem, 1, 2, 0, (float *) array, nullarray, anynul, status); } else if (datatype == TDOUBLE) { ffgcld(fptr, 2, 1, firstelem, nelem, 1, 2, 0, (double *) array, nullarray, anynul, status); } else *status = BAD_DATATYPE; return(*status); } /*--------------------------------------------------------------------------*/ int ffgsv( fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the value */ long *blc, /* I - 'bottom left corner' of the subsection */ long *trc , /* I - 'top right corner' of the subsection */ long *inc, /* I - increment to be applied in each dim. */ void *nulval, /* I - value for undefined pixels */ void *array, /* O - array of values that are returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an section of values from the primary array. The datatype of the input array is defined by the 2nd argument. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Undefined elements will be set equal to NULVAL, unless NULVAL=0 in which case no checking for undefined values will be performed. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { int naxis, ii; long naxes[9]; LONGLONG nelem = 1; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* get the size of the image */ ffgidm(fptr, &naxis, status); ffgisz(fptr, 9, naxes, status); /* test for the important special case where we are reading the whole image */ /* this is only useful for images that are not tile-compressed */ if (!fits_is_compressed_image(fptr, status)) { for (ii = 0; ii < naxis; ii++) { if (inc[ii] != 1 || blc[ii] !=1 || trc[ii] != naxes[ii]) break; nelem = nelem * naxes[ii]; } if (ii == naxis) { /* read the whole image more efficiently */ ffgpxv(fptr, datatype, blc, nelem, nulval, array, anynul, status); return(*status); } } if (datatype == TBYTE) { if (nulval == 0) ffgsvb(fptr, 1, naxis, naxes, blc, trc, inc, 0, (unsigned char *) array, anynul, status); else ffgsvb(fptr, 1, naxis, naxes, blc, trc, inc, *(unsigned char *) nulval, (unsigned char *) array, anynul, status); } else if (datatype == TSBYTE) { if (nulval == 0) ffgsvsb(fptr, 1, naxis, naxes, blc, trc, inc, 0, (signed char *) array, anynul, status); else ffgsvsb(fptr, 1, naxis, naxes, blc, trc, inc, *(signed char *) nulval, (signed char *) array, anynul, status); } else if (datatype == TUSHORT) { if (nulval == 0) ffgsvui(fptr, 1, naxis, naxes, blc, trc, inc, 0, (unsigned short *) array, anynul, status); else ffgsvui(fptr, 1, naxis, naxes,blc, trc, inc, *(unsigned short *) nulval, (unsigned short *) array, anynul, status); } else if (datatype == TSHORT) { if (nulval == 0) ffgsvi(fptr, 1, naxis, naxes, blc, trc, inc, 0, (short *) array, anynul, status); else ffgsvi(fptr, 1, naxis, naxes, blc, trc, inc, *(short *) nulval, (short *) array, anynul, status); } else if (datatype == TUINT) { if (nulval == 0) ffgsvuk(fptr, 1, naxis, naxes, blc, trc, inc, 0, (unsigned int *) array, anynul, status); else ffgsvuk(fptr, 1, naxis, naxes, blc, trc, inc, *(unsigned int *) nulval, (unsigned int *) array, anynul, status); } else if (datatype == TINT) { if (nulval == 0) ffgsvk(fptr, 1, naxis, naxes, blc, trc, inc, 0, (int *) array, anynul, status); else ffgsvk(fptr, 1, naxis, naxes, blc, trc, inc, *(int *) nulval, (int *) array, anynul, status); } else if (datatype == TULONG) { if (nulval == 0) ffgsvuj(fptr, 1, naxis, naxes, blc, trc, inc, 0, (unsigned long *) array, anynul, status); else ffgsvuj(fptr, 1, naxis, naxes, blc, trc, inc, *(unsigned long *) nulval, (unsigned long *) array, anynul, status); } else if (datatype == TLONG) { if (nulval == 0) ffgsvj(fptr, 1, naxis, naxes, blc, trc, inc, 0, (long *) array, anynul, status); else ffgsvj(fptr, 1, naxis, naxes, blc, trc, inc, *(long *) nulval, (long *) array, anynul, status); } else if (datatype == TLONGLONG) { if (nulval == 0) ffgsvjj(fptr, 1, naxis, naxes, blc, trc, inc, 0, (LONGLONG *) array, anynul, status); else ffgsvjj(fptr, 1, naxis, naxes, blc, trc, inc, *(LONGLONG *) nulval, (LONGLONG *) array, anynul, status); } else if (datatype == TFLOAT) { if (nulval == 0) ffgsve(fptr, 1, naxis, naxes, blc, trc, inc, 0, (float *) array, anynul, status); else ffgsve(fptr, 1, naxis, naxes, blc, trc, inc, *(float *) nulval, (float *) array, anynul, status); } else if (datatype == TDOUBLE) { if (nulval == 0) ffgsvd(fptr, 1, naxis, naxes, blc, trc, inc, 0, (double *) array, anynul, status); else ffgsvd(fptr, 1, naxis, naxes, blc, trc, inc, *(double *) nulval, (double *) array, anynul, status); } else *status = BAD_DATATYPE; return(*status); } /*--------------------------------------------------------------------------*/ int ffgpv( fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the value */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ void *nulval, /* I - value for undefined pixels */ void *array, /* O - array of values that are returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. The datatype of the input array is defined by the 2nd argument. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Undefined elements will be set equal to NULVAL, unless NULVAL=0 in which case no checking for undefined values will be performed. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { if (*status > 0 || nelem == 0) /* inherit input status value if > 0 */ return(*status); /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (datatype == TBYTE) { if (nulval == 0) ffgpvb(fptr, 1, firstelem, nelem, 0, (unsigned char *) array, anynul, status); else ffgpvb(fptr, 1, firstelem, nelem, *(unsigned char *) nulval, (unsigned char *) array, anynul, status); } else if (datatype == TSBYTE) { if (nulval == 0) ffgpvsb(fptr, 1, firstelem, nelem, 0, (signed char *) array, anynul, status); else ffgpvsb(fptr, 1, firstelem, nelem, *(signed char *) nulval, (signed char *) array, anynul, status); } else if (datatype == TUSHORT) { if (nulval == 0) ffgpvui(fptr, 1, firstelem, nelem, 0, (unsigned short *) array, anynul, status); else ffgpvui(fptr, 1, firstelem, nelem, *(unsigned short *) nulval, (unsigned short *) array, anynul, status); } else if (datatype == TSHORT) { if (nulval == 0) ffgpvi(fptr, 1, firstelem, nelem, 0, (short *) array, anynul, status); else ffgpvi(fptr, 1, firstelem, nelem, *(short *) nulval, (short *) array, anynul, status); } else if (datatype == TUINT) { if (nulval == 0) ffgpvuk(fptr, 1, firstelem, nelem, 0, (unsigned int *) array, anynul, status); else ffgpvuk(fptr, 1, firstelem, nelem, *(unsigned int *) nulval, (unsigned int *) array, anynul, status); } else if (datatype == TINT) { if (nulval == 0) ffgpvk(fptr, 1, firstelem, nelem, 0, (int *) array, anynul, status); else ffgpvk(fptr, 1, firstelem, nelem, *(int *) nulval, (int *) array, anynul, status); } else if (datatype == TULONG) { if (nulval == 0) ffgpvuj(fptr, 1, firstelem, nelem, 0, (unsigned long *) array, anynul, status); else ffgpvuj(fptr, 1, firstelem, nelem, *(unsigned long *) nulval, (unsigned long *) array, anynul, status); } else if (datatype == TLONG) { if (nulval == 0) ffgpvj(fptr, 1, firstelem, nelem, 0, (long *) array, anynul, status); else ffgpvj(fptr, 1, firstelem, nelem, *(long *) nulval, (long *) array, anynul, status); } else if (datatype == TLONGLONG) { if (nulval == 0) ffgpvjj(fptr, 1, firstelem, nelem, 0, (LONGLONG *) array, anynul, status); else ffgpvjj(fptr, 1, firstelem, nelem, *(LONGLONG *) nulval, (LONGLONG *) array, anynul, status); } else if (datatype == TFLOAT) { if (nulval == 0) ffgpve(fptr, 1, firstelem, nelem, 0, (float *) array, anynul, status); else ffgpve(fptr, 1, firstelem, nelem, *(float *) nulval, (float *) array, anynul, status); } else if (datatype == TDOUBLE) { if (nulval == 0) ffgpvd(fptr, 1, firstelem, nelem, 0, (double *) array, anynul, status); else { ffgpvd(fptr, 1, firstelem, nelem, *(double *) nulval, (double *) array, anynul, status); } } else *status = BAD_DATATYPE; return(*status); } /*--------------------------------------------------------------------------*/ int ffgpf( fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the value */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ void *array, /* O - array of values that are returned */ char *nullarray, /* O - array of null value flags */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. The datatype of the input array is defined by the 2nd argument. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). The nullarray values will = 1 if the corresponding array value is null. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { if (*status > 0 || nelem == 0) /* inherit input status value if > 0 */ return(*status); /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (datatype == TBYTE) { ffgpfb(fptr, 1, firstelem, nelem, (unsigned char *) array, nullarray, anynul, status); } else if (datatype == TSBYTE) { ffgpfsb(fptr, 1, firstelem, nelem, (signed char *) array, nullarray, anynul, status); } else if (datatype == TUSHORT) { ffgpfui(fptr, 1, firstelem, nelem, (unsigned short *) array, nullarray, anynul, status); } else if (datatype == TSHORT) { ffgpfi(fptr, 1, firstelem, nelem, (short *) array, nullarray, anynul, status); } else if (datatype == TUINT) { ffgpfuk(fptr, 1, firstelem, nelem, (unsigned int *) array, nullarray, anynul, status); } else if (datatype == TINT) { ffgpfk(fptr, 1, firstelem, nelem, (int *) array, nullarray, anynul, status); } else if (datatype == TULONG) { ffgpfuj(fptr, 1, firstelem, nelem, (unsigned long *) array, nullarray, anynul, status); } else if (datatype == TLONG) { ffgpfj(fptr, 1, firstelem, nelem, (long *) array, nullarray, anynul, status); } else if (datatype == TLONGLONG) { ffgpfjj(fptr, 1, firstelem, nelem, (LONGLONG *) array, nullarray, anynul, status); } else if (datatype == TFLOAT) { ffgpfe(fptr, 1, firstelem, nelem, (float *) array, nullarray, anynul, status); } else if (datatype == TDOUBLE) { ffgpfd(fptr, 1, firstelem, nelem, (double *) array, nullarray, anynul, status); } else *status = BAD_DATATYPE; return(*status); } /*--------------------------------------------------------------------------*/ int ffgcv( fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the value */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ void *nulval, /* I - value for undefined pixels */ void *array, /* O - array of values that are returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a table column. The datatype of the input array is defined by the 2nd argument. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Undefined elements will be set equal to NULVAL, unless NULVAL=0 in which case no checking for undefined values will be performed. ANYNUL is returned with a value of true if any pixels are undefined. */ { char cdummy[2]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (datatype == TBIT) { ffgcx(fptr, colnum, firstrow, firstelem, nelem, (char *) array, status); } else if (datatype == TBYTE) { if (nulval == 0) ffgclb(fptr, colnum, firstrow, firstelem, nelem, 1, 1, 0, (unsigned char *) array, cdummy, anynul, status); else ffgclb(fptr, colnum, firstrow, firstelem, nelem, 1, 1, *(unsigned char *) nulval, (unsigned char *) array, cdummy, anynul, status); } else if (datatype == TSBYTE) { if (nulval == 0) ffgclsb(fptr, colnum, firstrow, firstelem, nelem, 1, 1, 0, (signed char *) array, cdummy, anynul, status); else ffgclsb(fptr, colnum, firstrow, firstelem, nelem, 1, 1, *(signed char *) nulval, (signed char *) array, cdummy, anynul, status); } else if (datatype == TUSHORT) { if (nulval == 0) ffgclui(fptr, colnum, firstrow, firstelem, nelem, 1, 1, 0, (unsigned short *) array, cdummy, anynul, status); else ffgclui(fptr, colnum, firstrow, firstelem, nelem, 1, 1, *(unsigned short *) nulval, (unsigned short *) array, cdummy, anynul, status); } else if (datatype == TSHORT) { if (nulval == 0) ffgcli(fptr, colnum, firstrow, firstelem, nelem, 1, 1, 0, (short *) array, cdummy, anynul, status); else ffgcli(fptr, colnum, firstrow, firstelem, nelem, 1, 1, *(short *) nulval, (short *) array, cdummy, anynul, status); } else if (datatype == TUINT) { if (nulval == 0) ffgcluk(fptr, colnum, firstrow, firstelem, nelem, 1, 1, 0, (unsigned int *) array, cdummy, anynul, status); else ffgcluk(fptr, colnum, firstrow, firstelem, nelem, 1, 1, *(unsigned int *) nulval, (unsigned int *) array, cdummy, anynul, status); } else if (datatype == TINT) { if (nulval == 0) ffgclk(fptr, colnum, firstrow, firstelem, nelem, 1, 1, 0, (int *) array, cdummy, anynul, status); else ffgclk(fptr, colnum, firstrow, firstelem, nelem, 1, 1, *(int *) nulval, (int *) array, cdummy, anynul, status); } else if (datatype == TULONG) { if (nulval == 0) ffgcluj(fptr, colnum, firstrow, firstelem, nelem, 1, 1, 0, (unsigned long *) array, cdummy, anynul, status); else ffgcluj(fptr, colnum, firstrow, firstelem, nelem, 1, 1, *(unsigned long *) nulval, (unsigned long *) array, cdummy, anynul, status); } else if (datatype == TLONG) { if (nulval == 0) ffgclj(fptr, colnum, firstrow, firstelem, nelem, 1, 1, 0, (long *) array, cdummy, anynul, status); else ffgclj(fptr, colnum, firstrow, firstelem, nelem, 1, 1, *(long *) nulval, (long *) array, cdummy, anynul, status); } else if (datatype == TLONGLONG) { if (nulval == 0) ffgcljj(fptr, colnum, firstrow, firstelem, nelem, 1, 1, 0, (LONGLONG *) array, cdummy, anynul, status); else ffgcljj(fptr, colnum, firstrow, firstelem, nelem, 1, 1, *(LONGLONG *) nulval, (LONGLONG *) array, cdummy, anynul, status); } else if (datatype == TFLOAT) { if (nulval == 0) ffgcle(fptr, colnum, firstrow, firstelem, nelem, 1, 1, 0., (float *) array, cdummy, anynul, status); else ffgcle(fptr, colnum, firstrow, firstelem, nelem, 1, 1, *(float *) nulval,(float *) array, cdummy, anynul, status); } else if (datatype == TDOUBLE) { if (nulval == 0) ffgcld(fptr, colnum, firstrow, firstelem, nelem, 1, 1, 0., (double *) array, cdummy, anynul, status); else ffgcld(fptr, colnum, firstrow, firstelem, nelem, 1, 1, *(double *) nulval, (double *) array, cdummy, anynul, status); } else if (datatype == TCOMPLEX) { if (nulval == 0) ffgcle(fptr, colnum, firstrow, (firstelem - 1) * 2 + 1, nelem * 2, 1, 1, 0., (float *) array, cdummy, anynul, status); else ffgcle(fptr, colnum, firstrow, (firstelem - 1) * 2 + 1, nelem * 2, 1, 1, *(float *) nulval, (float *) array, cdummy, anynul, status); } else if (datatype == TDBLCOMPLEX) { if (nulval == 0) ffgcld(fptr, colnum, firstrow, (firstelem - 1) * 2 + 1, nelem * 2, 1, 1, 0., (double *) array, cdummy, anynul, status); else ffgcld(fptr, colnum, firstrow, (firstelem - 1) * 2 + 1, nelem * 2, 1, 1, *(double *) nulval, (double *) array, cdummy, anynul, status); } else if (datatype == TLOGICAL) { if (nulval == 0) ffgcll(fptr, colnum, firstrow, firstelem, nelem, 1, 0, (char *) array, cdummy, anynul, status); else ffgcll(fptr, colnum, firstrow, firstelem, nelem, 1, *(char *) nulval, (char *) array, cdummy, anynul, status); } else if (datatype == TSTRING) { if (nulval == 0) { cdummy[0] = '\0'; ffgcls(fptr, colnum, firstrow, firstelem, nelem, 1, cdummy, (char **) array, cdummy, anynul, status); } else ffgcls(fptr, colnum, firstrow, firstelem, nelem, 1, (char *) nulval, (char **) array, cdummy, anynul, status); } else *status = BAD_DATATYPE; return(*status); } /*--------------------------------------------------------------------------*/ int ffgcf( fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the value */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ void *array, /* O - array of values that are returned */ char *nullarray, /* O - array of null value flags */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a table column. The datatype of the input array is defined by the 2nd argument. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). ANYNUL is returned with a value of true if any pixels are undefined. */ { double nulval = 0.; char cnulval[2]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (datatype == TBIT) { ffgcx(fptr, colnum, firstrow, firstelem, nelem, (char *) array, status); } else if (datatype == TBYTE) { ffgclb(fptr, colnum, firstrow, firstelem, nelem, 1, 2, (unsigned char ) nulval, (unsigned char *) array, nullarray, anynul, status); } else if (datatype == TSBYTE) { ffgclsb(fptr, colnum, firstrow, firstelem, nelem, 1, 2, (signed char ) nulval, (signed char *) array, nullarray, anynul, status); } else if (datatype == TUSHORT) { ffgclui(fptr, colnum, firstrow, firstelem, nelem, 1, 2, (unsigned short ) nulval, (unsigned short *) array, nullarray, anynul, status); } else if (datatype == TSHORT) { ffgcli(fptr, colnum, firstrow, firstelem, nelem, 1, 2, (short ) nulval, (short *) array, nullarray, anynul, status); } else if (datatype == TUINT) { ffgcluk(fptr, colnum, firstrow, firstelem, nelem, 1, 2, (unsigned int ) nulval, (unsigned int *) array, nullarray, anynul, status); } else if (datatype == TINT) { ffgclk(fptr, colnum, firstrow, firstelem, nelem, 1, 2, (int ) nulval, (int *) array, nullarray, anynul, status); } else if (datatype == TULONG) { ffgcluj(fptr, colnum, firstrow, firstelem, nelem, 1, 2, (unsigned long ) nulval, (unsigned long *) array, nullarray, anynul, status); } else if (datatype == TLONG) { ffgclj(fptr, colnum, firstrow, firstelem, nelem, 1, 2, (long ) nulval, (long *) array, nullarray, anynul, status); } else if (datatype == TLONGLONG) { ffgcljj(fptr, colnum, firstrow, firstelem, nelem, 1, 2, (LONGLONG ) nulval, (LONGLONG *) array, nullarray, anynul, status); } else if (datatype == TFLOAT) { ffgcle(fptr, colnum, firstrow, firstelem, nelem, 1, 2, (float ) nulval,(float *) array, nullarray, anynul, status); } else if (datatype == TDOUBLE) { ffgcld(fptr, colnum, firstrow, firstelem, nelem, 1, 2, nulval, (double *) array, nullarray, anynul, status); } else if (datatype == TCOMPLEX) { ffgcfc(fptr, colnum, firstrow, firstelem, nelem, (float *) array, nullarray, anynul, status); } else if (datatype == TDBLCOMPLEX) { ffgcfm(fptr, colnum, firstrow, firstelem, nelem, (double *) array, nullarray, anynul, status); } else if (datatype == TLOGICAL) { ffgcll(fptr, colnum, firstrow, firstelem, nelem, 2, (char ) nulval, (char *) array, nullarray, anynul, status); } else if (datatype == TSTRING) { ffgcls(fptr, colnum, firstrow, firstelem, nelem, 2, cnulval, (char **) array, nullarray, anynul, status); } else *status = BAD_DATATYPE; return(*status); } healpy-1.8.1/cfitsio/f77_wrap3.c0000654000175000017530000010140612272000775016742 0ustar zoncaplanck00000000000000/************************************************************************ f77_wrap1.c and f77_wrap2.c have now been split into 4 files to prevent compile-time memory errors (from expansion of compiler commands). f77_wrap1.c was split into f77_wrap1.c and f77_wrap3.c, and f77_wrap2.c was split into f77_wrap2.c and f77_wrap4.c: f77_wrap1.c contains routines operating on whole files and some utility routines. f77_wrap2.c contains routines operating on primary array, image, or column elements. f77_wrap3.c contains routines operating on headers & keywords. f77_wrap4.c contains miscellaneous routines. Peter's original comments: Together, f77_wrap1.c and f77_wrap2.c contain C wrappers for all the CFITSIO routines prototyped in fitsio.h, except for the generic datatype routines and features not supported in fortran (eg, unsigned integers), a few routines prototyped in fitsio2.h, which only a handful of FTOOLS use, plus a few obsolete FITSIO routines not present in CFITSIO. This file allows Fortran code to use the CFITSIO library instead of the FITSIO library without modification. It also gives access to new routines not present in FITSIO. Fortran FTOOLS must continue using the old routine names from FITSIO (ie, ftxxxx), but most of the C-wrappers simply redirect those calls to the corresponding CFITSIO routines (ie, ffxxxx), with appropriate parameter massaging where necessary. The main exception are read/write routines ending in j (ie, long data) which get redirected to C routines ending in k (ie, int data). This is more consistent with the default integer type in Fortran. f77_wrap1.c primarily holds routines operating on whole files and extension headers. f77_wrap2.c handle routines which read and write the data portion, plus miscellaneous extra routines. File created by Peter Wilson (HSTX), Oct-Dec. 1997 ************************************************************************/ #include "fitsio2.h" #include "f77_wrap.h" /*----------------- write single keywords --------------*/ FCALLSCSUB3(ffprec,FTPREC,ftprec,FITSUNIT,STRING,PINT) FCALLSCSUB3(ffpcom,FTPCOM,ftpcom,FITSUNIT,STRING,PINT) FCALLSCSUB4(ffpunt,FTPUNT,ftpunt,FITSUNIT,STRING,STRING,PINT) FCALLSCSUB3(ffphis,FTPHIS,ftphis,FITSUNIT,STRING,PINT) FCALLSCSUB2(ffpdat,FTPDAT,ftpdat,FITSUNIT,PINT) FCALLSCSUB3(ffgstm,FTGSTM,ftgstm,PSTRING,PINT,PINT) FCALLSCSUB4(ffgsdt,FTGSDT,ftgsdt,PINT,PINT,PINT,PINT) FCALLSCSUB5(ffdt2s,FTDT2S,ftdt2s,INT,INT,INT,PSTRING,PINT) FCALLSCSUB9(fftm2s,FTTM2S,fttm2s,INT,INT,INT,INT,INT,DOUBLE,INT,PSTRING,PINT) FCALLSCSUB5(ffs2dt,FTS2DT,fts2dt,STRING,PINT,PINT,PINT,PINT) FCALLSCSUB8(ffs2tm,FTS2TM,fts2tm,STRING,PINT,PINT,PINT,PINT,PINT,PDOUBLE,PINT) FCALLSCSUB4(ffpkyu,FTPKYU,ftpkyu,FITSUNIT,STRING,STRING,PINT) FCALLSCSUB5(ffpkys,FTPKYS,ftpkys,FITSUNIT,STRING,STRING,STRING,PINT) FCALLSCSUB5(ffpkls,FTPKLS,ftpkls,FITSUNIT,STRING,STRING,STRING,PINT) FCALLSCSUB2(ffplsw,FTPLSW,ftplsw,FITSUNIT,PINT) FCALLSCSUB5(ffpkyl,FTPKYL,ftpkyl,FITSUNIT,STRING,INT,STRING,PINT) FCALLSCSUB5(ffpkyj,FTPKYJ,ftpkyj,FITSUNIT,STRING,LONG,STRING,PINT) FCALLSCSUB5(ffpkyj,FTPKYK,ftpkyk,FITSUNIT,STRING,LONGLONG,STRING,PINT) FCALLSCSUB6(ffpkyf,FTPKYF,ftpkyf,FITSUNIT,STRING,FLOAT,INT,STRING,PINT) FCALLSCSUB6(ffpkye,FTPKYE,ftpkye,FITSUNIT,STRING,FLOAT,INT,STRING,PINT) FCALLSCSUB6(ffpkyg,FTPKYG,ftpkyg,FITSUNIT,STRING,DOUBLE,INT,STRING,PINT) FCALLSCSUB6(ffpkyd,FTPKYD,ftpkyd,FITSUNIT,STRING,DOUBLE,INT,STRING,PINT) FCALLSCSUB6(ffpkyc,FTPKYC,ftpkyc,FITSUNIT,STRING,FLOATV,INT,STRING,PINT) FCALLSCSUB6(ffpkym,FTPKYM,ftpkym,FITSUNIT,STRING,DOUBLEV,INT,STRING,PINT) FCALLSCSUB6(ffpkfc,FTPKFC,ftpkfc,FITSUNIT,STRING,FLOATV,INT,STRING,PINT) FCALLSCSUB6(ffpkfm,FTPKFM,ftpkfm,FITSUNIT,STRING,DOUBLEV,INT,STRING,PINT) FCALLSCSUB6(ffpkyt,FTPKYT,ftpkyt,FITSUNIT,STRING,LONG,DOUBLE,STRING,PINT) #define ftptdm_LONGV_A4 A3 FCALLSCSUB5(ffptdm,FTPTDM,ftptdm,FITSUNIT,INT,INT,LONGV,PINT) /*----------------- write array of keywords --------------*/ #define ftpkns_STRV_A5 NUM_ELEM_ARG(4) #define ftpkns_STRV_A6 NUM_ELEM_ARG(4) FCALLSCSUB7(ffpkns,FTPKNS,ftpkns,FITSUNIT,STRING,INT,INT,STRINGV,STRINGV,PINT) /* Must handle LOGICALV conversion manually... ffpknl uses ints */ void Cffpknl( fitsfile *fptr, char *keyroot, int nstart, int nkeys, int *numval, char **comment, int *status ); void Cffpknl( fitsfile *fptr, char *keyroot, int nstart, int nkeys, int *numval, char **comment, int *status ) { int i; for( i=0; i #include #include /* * nonzero_count is lookup table giving number of bits in 8-bit values not including * leading zeros used in fits_rdecomp, fits_rdecomp_short and fits_rdecomp_byte */ static const int nonzero_count[256] = { 0, 1, 2, 2, 3, 3, 3, 3, 4, 4, 4, 4, 4, 4, 4, 4, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8}; typedef unsigned char Buffer_t; typedef struct { int bitbuffer; /* bit buffer */ int bits_to_go; /* bits to go in buffer */ Buffer_t *start; /* start of buffer */ Buffer_t *current; /* current position in buffer */ Buffer_t *end; /* end of buffer */ } Buffer; #define putcbuf(c,mf) ((*(mf->current)++ = c), 0) #include "fitsio2.h" static void start_outputing_bits(Buffer *buffer); static int done_outputing_bits(Buffer *buffer); static int output_nbits(Buffer *buffer, int bits, int n); /* only used for diagnoistics static int case1, case2, case3; int fits_get_case(int *c1, int*c2, int*c3) { *c1 = case1; *c2 = case2; *c3 = case3; return(0); } */ /* this routine used to be called 'rcomp' (WDP) */ /*---------------------------------------------------------------------------*/ int fits_rcomp(int a[], /* input array */ int nx, /* number of input pixels */ unsigned char *c, /* output buffer */ int clen, /* max length of output */ int nblock) /* coding block size */ { Buffer bufmem, *buffer = &bufmem; /* int bsize; */ int i, j, thisblock; int lastpix, nextpix, pdiff; int v, fs, fsmask, top, fsmax, fsbits, bbits; int lbitbuffer, lbits_to_go; unsigned int psum; double pixelsum, dpsum; unsigned int *diff; /* * Original size of each pixel (bsize, bytes) and coding block * size (nblock, pixels) * Could make bsize a parameter to allow more efficient * compression of short & byte images. */ /* bsize = 4; */ /* nblock = 32; now an input parameter*/ /* * From bsize derive: * FSBITS = # bits required to store FS * FSMAX = maximum value for FS * BBITS = bits/pixel for direct coding */ /* switch (bsize) { case 1: fsbits = 3; fsmax = 6; break; case 2: fsbits = 4; fsmax = 14; break; case 4: fsbits = 5; fsmax = 25; break; default: ffpmsg("rdecomp: bsize must be 1, 2, or 4 bytes"); return(-1); } */ /* move out of switch block, to tweak performance */ fsbits = 5; fsmax = 25; bbits = 1<start = c; buffer->current = c; buffer->end = c+clen; buffer->bits_to_go = 8; /* * array for differences mapped to non-negative values */ diff = (unsigned int *) malloc(nblock*sizeof(unsigned int)); if (diff == (unsigned int *) NULL) { ffpmsg("fits_rcomp: insufficient memory"); return(-1); } /* * Code in blocks of nblock pixels */ start_outputing_bits(buffer); /* write out first int value to the first 4 bytes of the buffer */ if (output_nbits(buffer, a[0], 32) == EOF) { ffpmsg("rice_encode: end of buffer"); free(diff); return(-1); } lastpix = a[0]; /* the first difference will always be zero */ thisblock = nblock; for (i=0; i> 1; for (fs = 0; psum>0; fs++) psum >>= 1; /* * write the codes * fsbits ID bits used to indicate split level */ if (fs >= fsmax) { /* Special high entropy case when FS >= fsmax * Just write pixel difference values directly, no Rice coding at all. */ if (output_nbits(buffer, fsmax+1, fsbits) == EOF) { ffpmsg("rice_encode: end of buffer"); free(diff); return(-1); } for (j=0; jbitbuffer; lbits_to_go = buffer->bits_to_go; for (j=0; j> fs; /* * top is coded by top zeros + 1 */ if (lbits_to_go >= top+1) { lbitbuffer <<= top+1; lbitbuffer |= 1; lbits_to_go -= top+1; } else { lbitbuffer <<= lbits_to_go; putcbuf(lbitbuffer & 0xff,buffer); for (top -= lbits_to_go; top>=8; top -= 8) { putcbuf(0, buffer); } lbitbuffer = 1; lbits_to_go = 7-top; } /* * bottom FS bits are written without coding * code is output_nbits, moved into this routine to reduce overheads * This code potentially breaks if FS>24, so I am limiting * FS to 24 by choice of FSMAX above. */ if (fs > 0) { lbitbuffer <<= fs; lbitbuffer |= v & fsmask; lbits_to_go -= fs; while (lbits_to_go <= 0) { putcbuf((lbitbuffer>>(-lbits_to_go)) & 0xff,buffer); lbits_to_go += 8; } } } /* check if overflowed output buffer */ if (buffer->current > buffer->end) { ffpmsg("rice_encode: end of buffer"); free(diff); return(-1); } buffer->bitbuffer = lbitbuffer; buffer->bits_to_go = lbits_to_go; } } done_outputing_bits(buffer); free(diff); /* * return number of bytes used */ return(buffer->current - buffer->start); } /*---------------------------------------------------------------------------*/ int fits_rcomp_short( short a[], /* input array */ int nx, /* number of input pixels */ unsigned char *c, /* output buffer */ int clen, /* max length of output */ int nblock) /* coding block size */ { Buffer bufmem, *buffer = &bufmem; /* int bsize; */ int i, j, thisblock; /* NOTE: in principle, the following 2 variable could be declared as 'short' but in fact the code runs faster (on 32-bit Linux at least) as 'int' */ int lastpix, nextpix; /* int pdiff; */ short pdiff; int v, fs, fsmask, top, fsmax, fsbits, bbits; int lbitbuffer, lbits_to_go; /* unsigned int psum; */ unsigned short psum; double pixelsum, dpsum; unsigned int *diff; /* * Original size of each pixel (bsize, bytes) and coding block * size (nblock, pixels) * Could make bsize a parameter to allow more efficient * compression of short & byte images. */ /* bsize = 2; */ /* nblock = 32; now an input parameter */ /* * From bsize derive: * FSBITS = # bits required to store FS * FSMAX = maximum value for FS * BBITS = bits/pixel for direct coding */ /* switch (bsize) { case 1: fsbits = 3; fsmax = 6; break; case 2: fsbits = 4; fsmax = 14; break; case 4: fsbits = 5; fsmax = 25; break; default: ffpmsg("rdecomp: bsize must be 1, 2, or 4 bytes"); return(-1); } */ /* move these out of switch block to further tweak performance */ fsbits = 4; fsmax = 14; bbits = 1<start = c; buffer->current = c; buffer->end = c+clen; buffer->bits_to_go = 8; /* * array for differences mapped to non-negative values */ diff = (unsigned int *) malloc(nblock*sizeof(unsigned int)); if (diff == (unsigned int *) NULL) { ffpmsg("fits_rcomp: insufficient memory"); return(-1); } /* * Code in blocks of nblock pixels */ start_outputing_bits(buffer); /* write out first short value to the first 2 bytes of the buffer */ if (output_nbits(buffer, a[0], 16) == EOF) { ffpmsg("rice_encode: end of buffer"); free(diff); return(-1); } lastpix = a[0]; /* the first difference will always be zero */ thisblock = nblock; for (i=0; i> 1; */ psum = ((unsigned short) dpsum ) >> 1; for (fs = 0; psum>0; fs++) psum >>= 1; /* * write the codes * fsbits ID bits used to indicate split level */ if (fs >= fsmax) { /* case3++; */ /* Special high entropy case when FS >= fsmax * Just write pixel difference values directly, no Rice coding at all. */ if (output_nbits(buffer, fsmax+1, fsbits) == EOF) { ffpmsg("rice_encode: end of buffer"); free(diff); return(-1); } for (j=0; jbitbuffer; lbits_to_go = buffer->bits_to_go; for (j=0; j> fs; /* * top is coded by top zeros + 1 */ if (lbits_to_go >= top+1) { lbitbuffer <<= top+1; lbitbuffer |= 1; lbits_to_go -= top+1; } else { lbitbuffer <<= lbits_to_go; putcbuf(lbitbuffer & 0xff,buffer); for (top -= lbits_to_go; top>=8; top -= 8) { putcbuf(0, buffer); } lbitbuffer = 1; lbits_to_go = 7-top; } /* * bottom FS bits are written without coding * code is output_nbits, moved into this routine to reduce overheads * This code potentially breaks if FS>24, so I am limiting * FS to 24 by choice of FSMAX above. */ if (fs > 0) { lbitbuffer <<= fs; lbitbuffer |= v & fsmask; lbits_to_go -= fs; while (lbits_to_go <= 0) { putcbuf((lbitbuffer>>(-lbits_to_go)) & 0xff,buffer); lbits_to_go += 8; } } } /* check if overflowed output buffer */ if (buffer->current > buffer->end) { ffpmsg("rice_encode: end of buffer"); free(diff); return(-1); } buffer->bitbuffer = lbitbuffer; buffer->bits_to_go = lbits_to_go; } } done_outputing_bits(buffer); free(diff); /* * return number of bytes used */ return(buffer->current - buffer->start); } /*---------------------------------------------------------------------------*/ int fits_rcomp_byte( signed char a[], /* input array */ int nx, /* number of input pixels */ unsigned char *c, /* output buffer */ int clen, /* max length of output */ int nblock) /* coding block size */ { Buffer bufmem, *buffer = &bufmem; /* int bsize; */ int i, j, thisblock; /* NOTE: in principle, the following 2 variable could be declared as 'short' but in fact the code runs faster (on 32-bit Linux at least) as 'int' */ int lastpix, nextpix; /* int pdiff; */ signed char pdiff; int v, fs, fsmask, top, fsmax, fsbits, bbits; int lbitbuffer, lbits_to_go; /* unsigned int psum; */ unsigned char psum; double pixelsum, dpsum; unsigned int *diff; /* * Original size of each pixel (bsize, bytes) and coding block * size (nblock, pixels) * Could make bsize a parameter to allow more efficient * compression of short & byte images. */ /* bsize = 1; */ /* nblock = 32; now an input parameter */ /* * From bsize derive: * FSBITS = # bits required to store FS * FSMAX = maximum value for FS * BBITS = bits/pixel for direct coding */ /* switch (bsize) { case 1: fsbits = 3; fsmax = 6; break; case 2: fsbits = 4; fsmax = 14; break; case 4: fsbits = 5; fsmax = 25; break; default: ffpmsg("rdecomp: bsize must be 1, 2, or 4 bytes"); return(-1); } */ /* move these out of switch block to further tweak performance */ fsbits = 3; fsmax = 6; bbits = 1<start = c; buffer->current = c; buffer->end = c+clen; buffer->bits_to_go = 8; /* * array for differences mapped to non-negative values */ diff = (unsigned int *) malloc(nblock*sizeof(unsigned int)); if (diff == (unsigned int *) NULL) { ffpmsg("fits_rcomp: insufficient memory"); return(-1); } /* * Code in blocks of nblock pixels */ start_outputing_bits(buffer); /* write out first byte value to the first byte of the buffer */ if (output_nbits(buffer, a[0], 8) == EOF) { ffpmsg("rice_encode: end of buffer"); free(diff); return(-1); } lastpix = a[0]; /* the first difference will always be zero */ thisblock = nblock; for (i=0; i> 1; */ psum = ((unsigned char) dpsum ) >> 1; for (fs = 0; psum>0; fs++) psum >>= 1; /* * write the codes * fsbits ID bits used to indicate split level */ if (fs >= fsmax) { /* Special high entropy case when FS >= fsmax * Just write pixel difference values directly, no Rice coding at all. */ if (output_nbits(buffer, fsmax+1, fsbits) == EOF) { ffpmsg("rice_encode: end of buffer"); free(diff); return(-1); } for (j=0; jbitbuffer; lbits_to_go = buffer->bits_to_go; for (j=0; j> fs; /* * top is coded by top zeros + 1 */ if (lbits_to_go >= top+1) { lbitbuffer <<= top+1; lbitbuffer |= 1; lbits_to_go -= top+1; } else { lbitbuffer <<= lbits_to_go; putcbuf(lbitbuffer & 0xff,buffer); for (top -= lbits_to_go; top>=8; top -= 8) { putcbuf(0, buffer); } lbitbuffer = 1; lbits_to_go = 7-top; } /* * bottom FS bits are written without coding * code is output_nbits, moved into this routine to reduce overheads * This code potentially breaks if FS>24, so I am limiting * FS to 24 by choice of FSMAX above. */ if (fs > 0) { lbitbuffer <<= fs; lbitbuffer |= v & fsmask; lbits_to_go -= fs; while (lbits_to_go <= 0) { putcbuf((lbitbuffer>>(-lbits_to_go)) & 0xff,buffer); lbits_to_go += 8; } } } /* check if overflowed output buffer */ if (buffer->current > buffer->end) { ffpmsg("rice_encode: end of buffer"); free(diff); return(-1); } buffer->bitbuffer = lbitbuffer; buffer->bits_to_go = lbits_to_go; } } done_outputing_bits(buffer); free(diff); /* * return number of bytes used */ return(buffer->current - buffer->start); } /*---------------------------------------------------------------------------*/ /* bit_output.c * * Bit output routines * Procedures return zero on success, EOF on end-of-buffer * * Programmer: R. White Date: 20 July 1998 */ /* Initialize for bit output */ static void start_outputing_bits(Buffer *buffer) { /* * Buffer is empty to start with */ buffer->bitbuffer = 0; buffer->bits_to_go = 8; } /*---------------------------------------------------------------------------*/ /* Output N bits (N must be <= 32) */ static int output_nbits(Buffer *buffer, int bits, int n) { /* local copies */ int lbitbuffer; int lbits_to_go; /* AND mask for the right-most n bits */ static unsigned int mask[33] = {0, 0x1, 0x3, 0x7, 0xf, 0x1f, 0x3f, 0x7f, 0xff, 0x1ff, 0x3ff, 0x7ff, 0xfff, 0x1fff, 0x3fff, 0x7fff, 0xffff, 0x1ffff, 0x3ffff, 0x7ffff, 0xfffff, 0x1fffff, 0x3fffff, 0x7fffff, 0xffffff, 0x1ffffff, 0x3ffffff, 0x7ffffff, 0xfffffff, 0x1fffffff, 0x3fffffff, 0x7fffffff, 0xffffffff}; /* * insert bits at end of bitbuffer */ lbitbuffer = buffer->bitbuffer; lbits_to_go = buffer->bits_to_go; if (lbits_to_go+n > 32) { /* * special case for large n: put out the top lbits_to_go bits first * note that 0 < lbits_to_go <= 8 */ lbitbuffer <<= lbits_to_go; /* lbitbuffer |= (bits>>(n-lbits_to_go)) & ((1<>(n-lbits_to_go)) & *(mask+lbits_to_go); putcbuf(lbitbuffer & 0xff,buffer); n -= lbits_to_go; lbits_to_go = 8; } lbitbuffer <<= n; /* lbitbuffer |= ( bits & ((1<>(-lbits_to_go)) & 0xff,buffer); lbits_to_go += 8; } buffer->bitbuffer = lbitbuffer; buffer->bits_to_go = lbits_to_go; return(0); } /*---------------------------------------------------------------------------*/ /* Flush out the last bits */ static int done_outputing_bits(Buffer *buffer) { if(buffer->bits_to_go < 8) { putcbuf(buffer->bitbuffer<bits_to_go,buffer); /* if (putcbuf(buffer->bitbuffer<bits_to_go,buffer) == EOF) return(EOF); */ } return(0); } /*---------------------------------------------------------------------------*/ /*----------------------------------------------------------*/ /* */ /* START OF SOURCE FILE ORIGINALLY CALLED rdecomp.c */ /* */ /*----------------------------------------------------------*/ /* @(#) rdecomp.c 1.4 99/03/01 12:38:41 */ /* rdecomp.c Decompress image line using * (1) Difference of adjacent pixels * (2) Rice algorithm coding * * Returns 0 on success or 1 on failure */ /* moved these 'includes' to the beginning of the file (WDP) #include #include */ /*---------------------------------------------------------------------------*/ /* this routine used to be called 'rdecomp' (WDP) */ int fits_rdecomp (unsigned char *c, /* input buffer */ int clen, /* length of input */ unsigned int array[], /* output array */ int nx, /* number of output pixels */ int nblock) /* coding block size */ { /* int bsize; */ int i, k, imax; int nbits, nzero, fs; unsigned char *cend, bytevalue; unsigned int b, diff, lastpix; int fsmax, fsbits, bbits; extern const int nonzero_count[]; /* * Original size of each pixel (bsize, bytes) and coding block * size (nblock, pixels) * Could make bsize a parameter to allow more efficient * compression of short & byte images. */ /* bsize = 4; */ /* nblock = 32; now an input parameter */ /* * From bsize derive: * FSBITS = # bits required to store FS * FSMAX = maximum value for FS * BBITS = bits/pixel for direct coding */ /* switch (bsize) { case 1: fsbits = 3; fsmax = 6; break; case 2: fsbits = 4; fsmax = 14; break; case 4: fsbits = 5; fsmax = 25; break; default: ffpmsg("rdecomp: bsize must be 1, 2, or 4 bytes"); return 1; } */ /* move out of switch block, to tweak performance */ fsbits = 5; fsmax = 25; bbits = 1<> nbits) - 1; b &= (1< nx) imax = nx; if (fs<0) { /* low-entropy case, all zero differences */ for ( ; i= 0; k -= 8) { b = *c++; diff |= b<0) { b = *c++; diff |= b>>(-k); b &= (1<>1; } else { diff = ~(diff>>1); } array[i] = diff+lastpix; lastpix = array[i]; } } else { /* normal case, Rice coding */ for ( ; i>nbits); b &= (1<>1; } else { diff = ~(diff>>1); } array[i] = diff+lastpix; lastpix = array[i]; } } if (c > cend) { ffpmsg("decompression error: hit end of compressed byte stream"); return 1; } } if (c < cend) { ffpmsg("decompression warning: unused bytes at end of compressed buffer"); } return 0; } /*---------------------------------------------------------------------------*/ /* this routine used to be called 'rdecomp' (WDP) */ int fits_rdecomp_short (unsigned char *c, /* input buffer */ int clen, /* length of input */ unsigned short array[], /* output array */ int nx, /* number of output pixels */ int nblock) /* coding block size */ { int i, imax; /* int bsize; */ int k; int nbits, nzero, fs; unsigned char *cend, bytevalue; unsigned int b, diff, lastpix; int fsmax, fsbits, bbits; extern const int nonzero_count[]; /* * Original size of each pixel (bsize, bytes) and coding block * size (nblock, pixels) * Could make bsize a parameter to allow more efficient * compression of short & byte images. */ /* bsize = 2; */ /* nblock = 32; now an input parameter */ /* * From bsize derive: * FSBITS = # bits required to store FS * FSMAX = maximum value for FS * BBITS = bits/pixel for direct coding */ /* switch (bsize) { case 1: fsbits = 3; fsmax = 6; break; case 2: fsbits = 4; fsmax = 14; break; case 4: fsbits = 5; fsmax = 25; break; default: ffpmsg("rdecomp: bsize must be 1, 2, or 4 bytes"); return 1; } */ /* move out of switch block, to tweak performance */ fsbits = 4; fsmax = 14; bbits = 1<> nbits) - 1; b &= (1< nx) imax = nx; if (fs<0) { /* low-entropy case, all zero differences */ for ( ; i= 0; k -= 8) { b = *c++; diff |= b<0) { b = *c++; diff |= b>>(-k); b &= (1<>1; } else { diff = ~(diff>>1); } array[i] = diff+lastpix; lastpix = array[i]; } } else { /* normal case, Rice coding */ for ( ; i>nbits); b &= (1<>1; } else { diff = ~(diff>>1); } array[i] = diff+lastpix; lastpix = array[i]; } } if (c > cend) { ffpmsg("decompression error: hit end of compressed byte stream"); return 1; } } if (c < cend) { ffpmsg("decompression warning: unused bytes at end of compressed buffer"); } return 0; } /*---------------------------------------------------------------------------*/ /* this routine used to be called 'rdecomp' (WDP) */ int fits_rdecomp_byte (unsigned char *c, /* input buffer */ int clen, /* length of input */ unsigned char array[], /* output array */ int nx, /* number of output pixels */ int nblock) /* coding block size */ { int i, imax; /* int bsize; */ int k; int nbits, nzero, fs; unsigned char *cend; unsigned int b, diff, lastpix; int fsmax, fsbits, bbits; extern const int nonzero_count[]; /* * Original size of each pixel (bsize, bytes) and coding block * size (nblock, pixels) * Could make bsize a parameter to allow more efficient * compression of short & byte images. */ /* bsize = 1; */ /* nblock = 32; now an input parameter */ /* * From bsize derive: * FSBITS = # bits required to store FS * FSMAX = maximum value for FS * BBITS = bits/pixel for direct coding */ /* switch (bsize) { case 1: fsbits = 3; fsmax = 6; break; case 2: fsbits = 4; fsmax = 14; break; case 4: fsbits = 5; fsmax = 25; break; default: ffpmsg("rdecomp: bsize must be 1, 2, or 4 bytes"); return 1; } */ /* move out of switch block, to tweak performance */ fsbits = 3; fsmax = 6; bbits = 1<> nbits) - 1; b &= (1< nx) imax = nx; if (fs<0) { /* low-entropy case, all zero differences */ for ( ; i= 0; k -= 8) { b = *c++; diff |= b<0) { b = *c++; diff |= b>>(-k); b &= (1<>1; } else { diff = ~(diff>>1); } array[i] = diff+lastpix; lastpix = array[i]; } } else { /* normal case, Rice coding */ for ( ; i>nbits); b &= (1<>1; } else { diff = ~(diff>>1); } array[i] = diff+lastpix; lastpix = array[i]; } } if (c > cend) { ffpmsg("decompression error: hit end of compressed byte stream"); return 1; } } if (c < cend) { ffpmsg("decompression warning: unused bytes at end of compressed buffer"); } return 0; } healpy-1.8.1/cfitsio/getcole.c0000654000175000017530000020350612272000775016651 0ustar zoncaplanck00000000000000/* This file, getcole.c, contains routines that read data elements from */ /* a FITS image or table, with float datatype */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffgpve( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ float nulval, /* I - value for undefined pixels */ float *array, /* O - array of values that are returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Undefined elements will be set equal to NULVAL, unless NULVAL=0 in which case no checking for undefined values will be performed. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { long row; char cdummy; int nullcheck = 1; float nullvalue; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ nullvalue = nulval; /* set local variable */ fits_read_compressed_pixels(fptr, TFLOAT, firstelem, nelem, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgcle(fptr, 2, row, firstelem, nelem, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgpfe( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ float *array, /* O - array of values that are returned */ char *nularray, /* O - array of null pixel flags */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any undefined pixels in the returned array will be set = 0 and the corresponding nularray value will be set = 1. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { long row; int nullcheck = 2; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_read_compressed_pixels(fptr, TFLOAT, firstelem, nelem, nullcheck, NULL, array, nularray, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgcle(fptr, 2, row, firstelem, nelem, 1, 2, 0.F, array, nularray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffg2de(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ float nulval, /* set undefined pixels equal to this */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ float *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an entire 2-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any null values in the array will be set equal to the value of nulval, unless nulval = 0 in which case no null checking will be performed. */ { /* call the 3D reading routine, with the 3rd dimension = 1 */ ffg3de(fptr, group, nulval, ncols, naxis2, naxis1, naxis2, 1, array, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffg3de(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ float nulval, /* set undefined pixels equal to this */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG nrows, /* I - number of rows in each plane of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ LONGLONG naxis3, /* I - FITS image NAXIS3 value */ float *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an entire 3-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any null values in the array will be set equal to the value of nulval, unless nulval = 0 in which case no null checking will be performed. */ { long tablerow; LONGLONG narray, nfits, ii, jj; char cdummy; int nullcheck = 1; long inc[] = {1,1,1}; LONGLONG fpixel[] = {1,1,1}; LONGLONG lpixel[3]; float nullvalue; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ lpixel[0] = ncols; lpixel[1] = nrows; lpixel[2] = naxis3; nullvalue = nulval; /* set local variable */ fits_read_compressed_img(fptr, TFLOAT, fpixel, lpixel, inc, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ tablerow=maxvalue(1,group); if (ncols == naxis1 && nrows == naxis2) /* arrays have same size? */ { /* all the image pixels are contiguous, so read all at once */ ffgcle(fptr, 2, tablerow, 1, naxis1 * naxis2 * naxis3, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } if (ncols < naxis1 || nrows < naxis2) return(*status = BAD_DIMEN); nfits = 1; /* next pixel in FITS image to read */ narray = 0; /* next pixel in output array to be filled */ /* loop over naxis3 planes in the data cube */ for (jj = 0; jj < naxis3; jj++) { /* loop over the naxis2 rows in the FITS image, */ /* reading naxis1 pixels to each row */ for (ii = 0; ii < naxis2; ii++) { if (ffgcle(fptr, 2, tablerow, nfits, naxis1, 1, 1, nulval, &array[narray], &cdummy, anynul, status) > 0) return(*status); nfits += naxis1; narray += ncols; } narray += (nrows - naxis2) * ncols; } return(*status); } /*--------------------------------------------------------------------------*/ int ffgsve(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of the column to read (1 = 1st) */ int naxis, /* I - number of dimensions in the FITS array */ long *naxes, /* I - size of each dimension */ long *blc, /* I - 'bottom left corner' of the subsection */ long *trc, /* I - 'top right corner' of the subsection */ long *inc, /* I - increment to be applied in each dimension */ float nulval, /* I - value to set undefined pixels */ float *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read a subsection of data values from an image or a table column. This routine is set up to handle a maximum of nine dimensions. */ { long ii,i0, i1,i2,i3,i4,i5,i6,i7,i8,row,rstr,rstp,rinc; long str[9],stp[9],incr[9],dir[9]; long nelem, nultyp, ninc, numcol; LONGLONG felem, dsize[10], blcll[9], trcll[9]; int hdutype, anyf; char ldummy, msg[FLEN_ERRMSG]; int nullcheck = 1; float nullvalue; if (naxis < 1 || naxis > 9) { sprintf(msg, "NAXIS = %d in call to ffgsve is out of range", naxis); ffpmsg(msg); return(*status = BAD_DIMEN); } if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ for (ii=0; ii < naxis; ii++) { blcll[ii] = blc[ii]; trcll[ii] = trc[ii]; } nullvalue = nulval; /* set local variable */ fits_read_compressed_img(fptr, TFLOAT, blcll, trcll, inc, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* if this is a primary array, then the input COLNUM parameter should be interpreted as the row number, and we will alway read the image data from column 2 (any group parameters are in column 1). */ if (ffghdt(fptr, &hdutype, status) > 0) return(*status); if (hdutype == IMAGE_HDU) { /* this is a primary array, or image extension */ if (colnum == 0) { rstr = 1; rstp = 1; } else { rstr = colnum; rstp = colnum; } rinc = 1; numcol = 2; } else { /* this is a table, so the row info is in the (naxis+1) elements */ rstr = blc[naxis]; rstp = trc[naxis]; rinc = inc[naxis]; numcol = colnum; } nultyp = 1; if (anynul) *anynul = FALSE; i0 = 0; for (ii = 0; ii < 9; ii++) { str[ii] = 1; stp[ii] = 1; incr[ii] = 1; dsize[ii] = 1; dir[ii] = 1; } for (ii = 0; ii < naxis; ii++) { if (trc[ii] < blc[ii]) { if (hdutype == IMAGE_HDU) { dir[ii] = -1; } else { sprintf(msg, "ffgsve: illegal range specified for axis %ld", ii + 1); ffpmsg(msg); return(*status = BAD_PIX_NUM); } } str[ii] = blc[ii]; stp[ii] = trc[ii]; incr[ii] = inc[ii]; dsize[ii + 1] = dsize[ii] * naxes[ii]; dsize[ii] = dsize[ii] * dir[ii]; } dsize[naxis] = dsize[naxis] * dir[naxis]; if (naxis == 1 && naxes[0] == 1) { /* This is not a vector column, so read all the rows at once */ nelem = (rstp - rstr) / rinc + 1; ninc = rinc; rstp = rstr; } else { /* have to read each row individually, in all dimensions */ nelem = (stp[0]*dir[0] - str[0]*dir[0]) / inc[0] + 1; ninc = incr[0] * dir[0]; } for (row = rstr; row <= rstp; row += rinc) { for (i8 = str[8]*dir[8]; i8 <= stp[8]*dir[8]; i8 += incr[8]) { for (i7 = str[7]*dir[7]; i7 <= stp[7]*dir[7]; i7 += incr[7]) { for (i6 = str[6]*dir[6]; i6 <= stp[6]*dir[6]; i6 += incr[6]) { for (i5 = str[5]*dir[5]; i5 <= stp[5]*dir[5]; i5 += incr[5]) { for (i4 = str[4]*dir[4]; i4 <= stp[4]*dir[4]; i4 += incr[4]) { for (i3 = str[3]*dir[3]; i3 <= stp[3]*dir[3]; i3 += incr[3]) { for (i2 = str[2]*dir[2]; i2 <= stp[2]*dir[2]; i2 += incr[2]) { for (i1 = str[1]*dir[1]; i1 <= stp[1]*dir[1]; i1 += incr[1]) { felem=str[0] + (i1 - dir[1]) * dsize[1] + (i2 - dir[2]) * dsize[2] + (i3 - dir[3]) * dsize[3] + (i4 - dir[4]) * dsize[4] + (i5 - dir[5]) * dsize[5] + (i6 - dir[6]) * dsize[6] + (i7 - dir[7]) * dsize[7] + (i8 - dir[8]) * dsize[8]; if ( ffgcle(fptr, numcol, row, felem, nelem, ninc, nultyp, nulval, &array[i0], &ldummy, &anyf, status) > 0) return(*status); if (anyf && anynul) *anynul = TRUE; i0 += nelem; } } } } } } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffgsfe(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of the column to read (1 = 1st) */ int naxis, /* I - number of dimensions in the FITS array */ long *naxes, /* I - size of each dimension */ long *blc, /* I - 'bottom left corner' of the subsection */ long *trc, /* I - 'top right corner' of the subsection */ long *inc, /* I - increment to be applied in each dimension */ float *array, /* O - array to be filled and returned */ char *flagval, /* O - set to 1 if corresponding value is null */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read a subsection of data values from an image or a table column. This routine is set up to handle a maximum of nine dimensions. */ { long ii,i0, i1,i2,i3,i4,i5,i6,i7,i8,row,rstr,rstp,rinc; long str[9],stp[9],incr[9],dsize[10]; LONGLONG blcll[9], trcll[9]; long felem, nelem, nultyp, ninc, numcol; int hdutype, anyf; float nulval = 0; char msg[FLEN_ERRMSG]; int nullcheck = 2; if (naxis < 1 || naxis > 9) { sprintf(msg, "NAXIS = %d in call to ffgsve is out of range", naxis); ffpmsg(msg); return(*status = BAD_DIMEN); } if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ for (ii=0; ii < naxis; ii++) { blcll[ii] = blc[ii]; trcll[ii] = trc[ii]; } fits_read_compressed_img(fptr, TFLOAT, blcll, trcll, inc, nullcheck, NULL, array, flagval, anynul, status); return(*status); } /* if this is a primary array, then the input COLNUM parameter should be interpreted as the row number, and we will alway read the image data from column 2 (any group parameters are in column 1). */ if (ffghdt(fptr, &hdutype, status) > 0) return(*status); if (hdutype == IMAGE_HDU) { /* this is a primary array, or image extension */ if (colnum == 0) { rstr = 1; rstp = 1; } else { rstr = colnum; rstp = colnum; } rinc = 1; numcol = 2; } else { /* this is a table, so the row info is in the (naxis+1) elements */ rstr = blc[naxis]; rstp = trc[naxis]; rinc = inc[naxis]; numcol = colnum; } nultyp = 2; if (anynul) *anynul = FALSE; i0 = 0; for (ii = 0; ii < 9; ii++) { str[ii] = 1; stp[ii] = 1; incr[ii] = 1; dsize[ii] = 1; } for (ii = 0; ii < naxis; ii++) { if (trc[ii] < blc[ii]) { sprintf(msg, "ffgsve: illegal range specified for axis %ld", ii + 1); ffpmsg(msg); return(*status = BAD_PIX_NUM); } str[ii] = blc[ii]; stp[ii] = trc[ii]; incr[ii] = inc[ii]; dsize[ii + 1] = dsize[ii] * naxes[ii]; } if (naxis == 1 && naxes[0] == 1) { /* This is not a vector column, so read all the rows at once */ nelem = (rstp - rstr) / rinc + 1; ninc = rinc; rstp = rstr; } else { /* have to read each row individually, in all dimensions */ nelem = (stp[0] - str[0]) / inc[0] + 1; ninc = incr[0]; } for (row = rstr; row <= rstp; row += rinc) { for (i8 = str[8]; i8 <= stp[8]; i8 += incr[8]) { for (i7 = str[7]; i7 <= stp[7]; i7 += incr[7]) { for (i6 = str[6]; i6 <= stp[6]; i6 += incr[6]) { for (i5 = str[5]; i5 <= stp[5]; i5 += incr[5]) { for (i4 = str[4]; i4 <= stp[4]; i4 += incr[4]) { for (i3 = str[3]; i3 <= stp[3]; i3 += incr[3]) { for (i2 = str[2]; i2 <= stp[2]; i2 += incr[2]) { for (i1 = str[1]; i1 <= stp[1]; i1 += incr[1]) { felem=str[0] + (i1 - 1) * dsize[1] + (i2 - 1) * dsize[2] + (i3 - 1) * dsize[3] + (i4 - 1) * dsize[4] + (i5 - 1) * dsize[5] + (i6 - 1) * dsize[6] + (i7 - 1) * dsize[7] + (i8 - 1) * dsize[8]; if ( ffgcle(fptr, numcol, row, felem, nelem, ninc, nultyp, nulval, &array[i0], &flagval[i0], &anyf, status) > 0) return(*status); if (anyf && anynul) *anynul = TRUE; i0 += nelem; } } } } } } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffggpe( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ long firstelem, /* I - first vector element to read (1 = 1st) */ long nelem, /* I - number of values to read */ float *array, /* O - array of values that are returned */ int *status) /* IO - error status */ /* Read an array of group parameters from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). */ { long row; int idummy; char cdummy; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgcle(fptr, 1, row, firstelem, nelem, 1, 1, 0.F, array, &cdummy, &idummy, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcve(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ float nulval, /* I - value for null pixels */ float *array, /* O - array of values that are read */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Any undefined pixels will be set equal to the value of 'nulval' unless nulval = 0 in which case no checks for undefined pixels will be made. */ { char cdummy; ffgcle(fptr, colnum, firstrow, firstelem, nelem, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcvc(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ float nulval, /* I - value for null pixels */ float *array, /* O - array of values that are read */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Any undefined pixels will be set equal to the value of 'nulval' unless nulval = 0 in which case no checks for undefined pixels will be made. TSCAL and ZERO should not be used with complex values. */ { char cdummy; /* a complex value is interpreted as a pair of float values, thus */ /* need to multiply the first element and number of elements by 2 */ ffgcle(fptr, colnum, firstrow, (firstelem - 1) * 2 + 1, nelem *2, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcfe(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ float *array, /* O - array of values that are read */ char *nularray, /* O - array of flags: 1 if null pixel; else 0 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Nularray will be set = 1 if the corresponding array pixel is undefined, otherwise nularray will = 0. */ { float dummy = 0; ffgcle(fptr, colnum, firstrow, firstelem, nelem, 1, 2, dummy, array, nularray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcfc(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ float *array, /* O - array of values that are read */ char *nularray, /* O - array of flags: 1 if null pixel; else 0 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Nularray will be set = 1 if the corresponding array pixel is undefined, otherwise nularray will = 0. TSCAL and ZERO should not be used with complex values. */ { LONGLONG ii, jj; float dummy = 0; char *carray; /* a complex value is interpreted as a pair of float values, thus */ /* need to multiply the first element and number of elements by 2 */ /* allocate temporary array */ carray = (char *) calloc( (size_t) (nelem * 2), 1); ffgcle(fptr, colnum, firstrow, (firstelem - 1) * 2 + 1, nelem * 2, 1, 2, dummy, array, carray, anynul, status); for (ii = 0, jj = 0; jj < nelem; ii += 2, jj++) { if (carray[ii] || carray[ii + 1]) nularray[jj] = 1; else nularray[jj] = 0; } free(carray); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcle( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ long elemincre, /* I - pixel increment; e.g., 2 = every other */ int nultyp, /* I - null value handling code: */ /* 1: set undefined pixels = nulval */ /* 2: set nularray=1 for undefined pixels */ float nulval, /* I - value for null pixels if nultyp = 1 */ float *array, /* O - array of values that are read */ char *nularray, /* O - array of flags = 1 if nultyp = 2 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. The column number may refer to a real column in an ASCII or binary table, or it may refer be a virtual column in a 1 or more grouped FITS primary array or image extension. FITSIO treats a primary array as a binary table with 2 vector columns: the first column contains the group parameters (often with length = 0) and the second column contains the array of image pixels. Each row of the table represents a group in the case of multigroup FITS images. The output array of values will be converted from the datatype of the column and will be scaled by the FITS TSCALn and TZEROn values if necessary. */ { double scale, zero, power = 1., dtemp; int tcode, maxelem2, hdutype, xcode, decimals; long twidth, incre; long ii, xwidth, ntodo; int convert, nulcheck, readcheck = 0; LONGLONG repeat, startpos, elemnum, readptr, tnull; LONGLONG rowlen, rownum, remain, next, rowincre, maxelem; char tform[20]; char message[81]; char snull[20]; /* the FITS null value if reading from ASCII table */ double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */ void *buffer; if (*status > 0 || nelem == 0) /* inherit input status value if > 0 */ return(*status); buffer = cbuff; if (anynul) *anynul = 0; if (nultyp == 2) memset(nularray, 0, (size_t) nelem); /* initialize nullarray */ /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if (elemincre < 0) readcheck = -1; /* don't do range checking in this case */ if ( ffgcprll( fptr, colnum, firstrow, firstelem, nelem, readcheck, &scale, &zero, tform, &twidth, &tcode, &maxelem2, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0 ) return(*status); maxelem = maxelem2; incre *= elemincre; /* multiply incre to just get every nth pixel */ if (tcode == TSTRING) /* setup for ASCII tables */ { /* get the number of implied decimal places if no explicit decmal point */ ffasfm(tform, &xcode, &xwidth, &decimals, status); for(ii = 0; ii < decimals; ii++) power *= 10.; } /*------------------------------------------------------------------*/ /* Decide whether to check for null values in the input FITS file: */ /*------------------------------------------------------------------*/ nulcheck = nultyp; /* by default check for null values in the FITS file */ if (nultyp == 1 && nulval == 0) nulcheck = 0; /* calling routine does not want to check for nulls */ else if (tcode%10 == 1 && /* if reading an integer column, and */ tnull == NULL_UNDEFINED) /* if a null value is not defined, */ nulcheck = 0; /* then do not check for null values. */ else if (tcode == TSHORT && (tnull > SHRT_MAX || tnull < SHRT_MIN) ) nulcheck = 0; /* Impossible null value */ else if (tcode == TBYTE && (tnull > 255 || tnull < 0) ) nulcheck = 0; /* Impossible null value */ else if (tcode == TSTRING && snull[0] == ASCII_NULL_UNDEFINED) nulcheck = 0; /*----------------------------------------------------------------------*/ /* If FITS column and output data array have same datatype, then we do */ /* not need to use a temporary buffer to store intermediate datatype. */ /*----------------------------------------------------------------------*/ convert = 1; if (tcode == TFLOAT) /* Special Case: */ { /* no type convertion required, so read */ /* data directly into output buffer. */ if (nelem < (LONGLONG)INT32_MAX/4) { maxelem = nelem; } else { maxelem = INT32_MAX/4; } if (nulcheck == 0 && scale == 1. && zero == 0.) convert = 0; /* no need to scale data or find nulls */ } /*---------------------------------------------------------------------*/ /* Now read the pixels from the FITS column. If the column does not */ /* have the same datatype as the output array, then we have to read */ /* the raw values into a temporary buffer (of limited size). In */ /* the case of a vector colum read only 1 vector of values at a time */ /* then skip to the next row if more values need to be read. */ /* After reading the raw values, then call the fffXXYY routine to (1) */ /* test for undefined values, (2) convert the datatype if necessary, */ /* and (3) scale the values by the FITS TSCALn and TZEROn linear */ /* scaling parameters. */ /*---------------------------------------------------------------------*/ remain = nelem; /* remaining number of values to read */ next = 0; /* next element in array to be read */ rownum = 0; /* row number, relative to firstrow */ while (remain) { /* limit the number of pixels to read at one time to the number that will fit in the buffer or to the number of pixels that remain in the current vector, which ever is smaller. */ ntodo = (long) minvalue(remain, maxelem); if (elemincre >= 0) { ntodo = (long) minvalue(ntodo, ((repeat - elemnum - 1)/elemincre +1)); } else { ntodo = (long) minvalue(ntodo, (elemnum/(-elemincre) +1)); } readptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * (incre / elemincre)); switch (tcode) { case (TFLOAT): ffgr4b(fptr, readptr, ntodo, incre, &array[next], status); if (convert) fffr4r4(&array[next], ntodo, scale, zero, nulcheck, nulval, &nularray[next], anynul, &array[next], status); break; case (TBYTE): ffgi1b(fptr, readptr, ntodo, incre, (unsigned char *) buffer, status); fffi1r4((unsigned char *) buffer, ntodo, scale, zero, nulcheck, (unsigned char) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TSHORT): ffgi2b(fptr, readptr, ntodo, incre, (short *) buffer, status); fffi2r4((short *) buffer, ntodo, scale, zero, nulcheck, (short) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TLONG): ffgi4b(fptr, readptr, ntodo, incre, (INT32BIT *) buffer, status); fffi4r4((INT32BIT *) buffer, ntodo, scale, zero, nulcheck, (INT32BIT) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TLONGLONG): ffgi8b(fptr, readptr, ntodo, incre, (long *) buffer, status); fffi8r4( (LONGLONG *) buffer, ntodo, scale, zero, nulcheck, tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TDOUBLE): ffgr8b(fptr, readptr, ntodo, incre, (double *) buffer, status); fffr8r4((double *) buffer, ntodo, scale, zero, nulcheck, nulval, &nularray[next], anynul, &array[next], status); break; case (TSTRING): ffmbyt(fptr, readptr, REPORT_EOF, status); if (incre == twidth) /* contiguous bytes */ ffgbyt(fptr, ntodo * twidth, buffer, status); else ffgbytoff(fptr, twidth, ntodo, incre - twidth, buffer, status); fffstrr4((char *) buffer, ntodo, scale, zero, twidth, power, nulcheck, snull, nulval, &nularray[next], anynul, &array[next], status); break; default: /* error trap for invalid column format */ sprintf(message, "Cannot read numbers from column %d which has format %s", colnum, tform); ffpmsg(message); if (hdutype == ASCII_TBL) return(*status = BAD_ATABLE_FORMAT); else return(*status = BAD_BTABLE_FORMAT); } /* End of switch block */ /*-------------------------*/ /* Check for fatal error */ /*-------------------------*/ if (*status > 0) /* test for error during previous read operation */ { dtemp = (double) next; if (hdutype > 0) sprintf(message, "Error reading elements %.0f thru %.0f from column %d (ffgcle).", dtemp+1., dtemp+ntodo, colnum); else sprintf(message, "Error reading elements %.0f thru %.0f from image (ffgcle).", dtemp+1., dtemp+ntodo); ffpmsg(message); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain -= ntodo; if (remain) { next += ntodo; elemnum = elemnum + (ntodo * elemincre); if (elemnum >= repeat) /* completed a row; start on later row */ { rowincre = elemnum / repeat; rownum += rowincre; elemnum = elemnum - (rowincre * repeat); } else if (elemnum < 0) /* completed a row; start on a previous row */ { rowincre = (-elemnum - 1) / repeat + 1; rownum -= rowincre; elemnum = (rowincre * repeat) + elemnum; } } } /* End of main while Loop */ /*--------------------------------*/ /* check for numerical overflow */ /*--------------------------------*/ if (*status == OVERFLOW_ERR) { ffpmsg( "Numerical overflow during type conversion while reading FITS data."); *status = NUM_OVERFLOW; } return(*status); } /*--------------------------------------------------------------------------*/ int fffi1r4(unsigned char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ unsigned char tnull, /* I - value of FITS TNULLn keyword if any */ float nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ float *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) output[ii] = (float) input[ii]; /* copy input to output */ } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { output[ii] = (float) (( (double) input[ii] ) * scale + zero); } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = (float) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { output[ii] = (float) (( (double) input[ii] ) * scale + zero); } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi2r4(short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ short tnull, /* I - value of FITS TNULLn keyword if any */ float nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ float *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) output[ii] = (float) input[ii]; /* copy input to output */ } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { output[ii] = (float) (input[ii] * scale + zero); } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = (float) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { output[ii] = (float) (input[ii] * scale + zero); } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi4r4(INT32BIT *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ INT32BIT tnull, /* I - value of FITS TNULLn keyword if any */ float nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ float *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) output[ii] = (float) input[ii]; /* copy input to output */ } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { output[ii] = (float) (input[ii] * scale + zero); } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = (float) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { output[ii] = (float) (input[ii] * scale + zero); } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi8r4(LONGLONG *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ LONGLONG tnull, /* I - value of FITS TNULLn keyword if any */ float nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ float *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) output[ii] = (float) input[ii]; /* copy input to output */ } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { output[ii] = (float) (input[ii] * scale + zero); } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = (float) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { output[ii] = (float) (input[ii] * scale + zero); } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffr4r4(float *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ float nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ float *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to NaN. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; short *sptr, iret; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { memcpy(output, input, ntodo * sizeof(float) ); } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { output[ii] = (float) (input[ii] * scale + zero); } } } else /* must check for null values */ { sptr = (short *) input; #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS sptr++; /* point to MSBs */ #endif if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++, sptr += 2) { if (0 != (iret = fnan(*sptr) ) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else { nullarray[ii] = 1; /* explicitly set value in case output contains a NaN */ output[ii] = FLOATNULLVALUE; } } else /* it's an underflow */ output[ii] = 0; } else output[ii] = input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++, sptr += 2) { if (0 != (iret = fnan(*sptr) ) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else { nullarray[ii] = 1; /* explicitly set value in case output contains a NaN */ output[ii] = FLOATNULLVALUE; } } else /* it's an underflow */ output[ii] = (float) zero; } else output[ii] = (float) (input[ii] * scale + zero); } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffr8r4(double *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ float nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ float *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to NaN. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; short *sptr, iret; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) output[ii] = (float) input[ii]; /* copy input to output */ } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { output[ii] = (float) (input[ii] * scale + zero); } } } else /* must check for null values */ { sptr = (short *) input; #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS sptr += 3; /* point to MSBs */ #endif if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++, sptr += 4) { if (0 != (iret = dnan(*sptr)) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ output[ii] = 0; } else output[ii] = (float) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++, sptr += 4) { if (0 != (iret = dnan(*sptr)) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ output[ii] = (float) zero; } else output[ii] = (float) (input[ii] * scale + zero); } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffstrr4(char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ long twidth, /* I - width of each substring of chars */ double implipower, /* I - power of 10 of implied decimal */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ char *snull, /* I - value of FITS null string, if any */ float nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ float *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to snull. If nullcheck= 0, then no special checking for nulls is performed. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { int nullen; long ii; double dvalue; char *cstring, message[81]; char *cptr, *tpos; char tempstore, chrzero = '0'; double val, power; int exponent, sign, esign, decpt; nullen = strlen(snull); cptr = input; /* pointer to start of input string */ for (ii = 0; ii < ntodo; ii++) { cstring = cptr; /* temporarily insert a null terminator at end of the string */ tpos = cptr + twidth; tempstore = *tpos; *tpos = 0; /* check if null value is defined, and if the */ /* column string is identical to the null string */ if (snull[0] != ASCII_NULL_UNDEFINED && !strncmp(snull, cptr, nullen) ) { if (nullcheck) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } cptr += twidth; } else { /* value is not the null value, so decode it */ /* remove any embedded blank characters from the string */ decpt = 0; sign = 1; val = 0.; power = 1.; exponent = 0; esign = 1; while (*cptr == ' ') /* skip leading blanks */ cptr++; if (*cptr == '-' || *cptr == '+') /* check for leading sign */ { if (*cptr == '-') sign = -1; cptr++; while (*cptr == ' ') /* skip blanks between sign and value */ cptr++; } while (*cptr >= '0' && *cptr <= '9') { val = val * 10. + *cptr - chrzero; /* accumulate the value */ cptr++; while (*cptr == ' ') /* skip embedded blanks in the value */ cptr++; } if (*cptr == '.' || *cptr == ',') /* check for decimal point */ { decpt = 1; /* set flag to show there was a decimal point */ cptr++; while (*cptr == ' ') /* skip any blanks */ cptr++; while (*cptr >= '0' && *cptr <= '9') { val = val * 10. + *cptr - chrzero; /* accumulate the value */ power = power * 10.; cptr++; while (*cptr == ' ') /* skip embedded blanks in the value */ cptr++; } } if (*cptr == 'E' || *cptr == 'D') /* check for exponent */ { cptr++; while (*cptr == ' ') /* skip blanks */ cptr++; if (*cptr == '-' || *cptr == '+') /* check for exponent sign */ { if (*cptr == '-') esign = -1; cptr++; while (*cptr == ' ') /* skip blanks between sign and exp */ cptr++; } while (*cptr >= '0' && *cptr <= '9') { exponent = exponent * 10 + *cptr - chrzero; /* accumulate exp */ cptr++; while (*cptr == ' ') /* skip embedded blanks */ cptr++; } } if (*cptr != 0) /* should end up at the null terminator */ { sprintf(message, "Cannot read number from ASCII table"); ffpmsg(message); sprintf(message, "Column field = %s.", cstring); ffpmsg(message); /* restore the char that was overwritten by the null */ *tpos = tempstore; return(*status = BAD_C2D); } if (!decpt) /* if no explicit decimal, use implied */ power = implipower; dvalue = (sign * val / power) * pow(10., (double) (esign * exponent)); output[ii] = (float) (dvalue * scale + zero); /* apply the scaling */ } /* restore the char that was overwritten by the null */ *tpos = tempstore; } return(*status); } healpy-1.8.1/cfitsio/buffers.c0000654000175000017530000014772612272000775016676 0ustar zoncaplanck00000000000000/* This file, buffers.c, contains the core set of FITSIO routines */ /* that use or manage the internal set of IO buffers. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffmbyt(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG bytepos, /* I - byte position in file to move to */ int err_mode, /* I - 1=ignore error, 0 = return error */ int *status) /* IO - error status */ { /* Move to the input byte location in the file. When writing to a file, a move may sometimes be made to a position beyond the current EOF. The err_mode parameter determines whether such conditions should be returned as an error or simply ignored. */ long record; if (*status > 0) return(*status); if (bytepos < 0) return(*status = NEG_FILE_POS); if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); record = (long) (bytepos / IOBUFLEN); /* zero-indexed record number */ /* if this is not the current record, then load it */ if ( ((fptr->Fptr)->curbuf < 0) || (record != (fptr->Fptr)->bufrecnum[(fptr->Fptr)->curbuf])) ffldrc(fptr, record, err_mode, status); if (*status <= 0) (fptr->Fptr)->bytepos = bytepos; /* save new file position */ return(*status); } /*--------------------------------------------------------------------------*/ int ffpbyt(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG nbytes, /* I - number of bytes to write */ void *buffer, /* I - buffer containing the bytes to write */ int *status) /* IO - error status */ /* put (write) the buffer of bytes to the output FITS file, starting at the current file position. Write large blocks of data directly to disk; write smaller segments to intermediate IO buffers to improve efficiency. */ { int ii, nbuff; LONGLONG filepos; long recstart, recend; long ntodo, bufpos, nspace, nwrite; char *cptr; if (*status > 0) return(*status); if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); if (nbytes > LONG_MAX) { ffpmsg("Number of bytes to write is greater than LONG_MAX (ffpbyt)."); *status = WRITE_ERROR; return(*status); } ntodo = (long) nbytes; cptr = (char *)buffer; if ((fptr->Fptr)->curbuf < 0) /* no current data buffer for this file */ { /* so reload the last one that was used */ ffldrc(fptr, (long) (((fptr->Fptr)->bytepos) / IOBUFLEN), REPORT_EOF, status); } if (nbytes >= MINDIRECT) { /* write large blocks of data directly to disk instead of via buffers */ /* first, fill up the current IO buffer before flushing it to disk */ nbuff = (fptr->Fptr)->curbuf; /* current IO buffer number */ filepos = (fptr->Fptr)->bytepos; /* save the write starting position */ recstart = (fptr->Fptr)->bufrecnum[nbuff]; /* starting record */ recend = (long) ((filepos + nbytes - 1) / IOBUFLEN); /* ending record */ /* bufpos is the starting position within the IO buffer */ bufpos = (long) (filepos - ((LONGLONG)recstart * IOBUFLEN)); nspace = IOBUFLEN - bufpos; /* amount of space left in the buffer */ if (nspace) { /* fill up the IO buffer */ memcpy((fptr->Fptr)->iobuffer + (nbuff * IOBUFLEN) + bufpos, cptr, nspace); ntodo -= nspace; /* decrement remaining number of bytes */ cptr += nspace; /* increment user buffer pointer */ filepos += nspace; /* increment file position pointer */ (fptr->Fptr)->dirty[nbuff] = TRUE; /* mark record as having been modified */ } for (ii = 0; ii < NIOBUF; ii++) /* flush any affected buffers to disk */ { if ((fptr->Fptr)->bufrecnum[ii] >= recstart && (fptr->Fptr)->bufrecnum[ii] <= recend ) { if ((fptr->Fptr)->dirty[ii]) /* flush modified buffer to disk */ ffbfwt(fptr->Fptr, ii, status); (fptr->Fptr)->bufrecnum[ii] = -1; /* disassociate buffer from the file */ } } /* move to the correct write position */ if ((fptr->Fptr)->io_pos != filepos) ffseek(fptr->Fptr, filepos); nwrite = ((ntodo - 1) / IOBUFLEN) * IOBUFLEN; /* don't write last buff */ ffwrite(fptr->Fptr, nwrite, cptr, status); /* write the data */ ntodo -= nwrite; /* decrement remaining number of bytes */ cptr += nwrite; /* increment user buffer pointer */ (fptr->Fptr)->io_pos = filepos + nwrite; /* update the file position */ if ((fptr->Fptr)->io_pos >= (fptr->Fptr)->filesize) /* at the EOF? */ { (fptr->Fptr)->filesize = (fptr->Fptr)->io_pos; /* increment file size */ /* initialize the current buffer with the correct fill value */ if ((fptr->Fptr)->hdutype == ASCII_TBL) memset((fptr->Fptr)->iobuffer + (nbuff * IOBUFLEN), 32, IOBUFLEN); /* blank fill */ else memset((fptr->Fptr)->iobuffer + (nbuff * IOBUFLEN), 0, IOBUFLEN); /* zero fill */ } else { /* read next record */ ffread(fptr->Fptr, IOBUFLEN, (fptr->Fptr)->iobuffer + (nbuff * IOBUFLEN), status); (fptr->Fptr)->io_pos += IOBUFLEN; } /* copy remaining bytes from user buffer into current IO buffer */ memcpy((fptr->Fptr)->iobuffer + (nbuff * IOBUFLEN), cptr, ntodo); (fptr->Fptr)->dirty[nbuff] = TRUE; /* mark record as having been modified */ (fptr->Fptr)->bufrecnum[nbuff] = recend; /* record number */ (fptr->Fptr)->logfilesize = maxvalue((fptr->Fptr)->logfilesize, (LONGLONG)(recend + 1) * IOBUFLEN); (fptr->Fptr)->bytepos = filepos + nwrite + ntodo; } else { /* bufpos is the starting position in IO buffer */ bufpos = (long) ((fptr->Fptr)->bytepos - ((LONGLONG)(fptr->Fptr)->bufrecnum[(fptr->Fptr)->curbuf] * IOBUFLEN)); nspace = IOBUFLEN - bufpos; /* amount of space left in the buffer */ while (ntodo) { nwrite = minvalue(ntodo, nspace); /* copy bytes from user's buffer to the IO buffer */ memcpy((fptr->Fptr)->iobuffer + ((fptr->Fptr)->curbuf * IOBUFLEN) + bufpos, cptr, nwrite); ntodo -= nwrite; /* decrement remaining number of bytes */ cptr += nwrite; (fptr->Fptr)->bytepos += nwrite; /* increment file position pointer */ (fptr->Fptr)->dirty[(fptr->Fptr)->curbuf] = TRUE; /* mark record as modified */ if (ntodo) /* load next record into a buffer */ { ffldrc(fptr, (long) ((fptr->Fptr)->bytepos / IOBUFLEN), IGNORE_EOF, status); bufpos = 0; nspace = IOBUFLEN; } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffpbytoff(fitsfile *fptr, /* I - FITS file pointer */ long gsize, /* I - size of each group of bytes */ long ngroups, /* I - number of groups to write */ long offset, /* I - size of gap between groups */ void *buffer, /* I - buffer to be written */ int *status) /* IO - error status */ /* put (write) the buffer of bytes to the output FITS file, with an offset between each group of bytes. This function combines ffmbyt and ffpbyt for increased efficiency. */ { int bcurrent; long ii, bufpos, nspace, nwrite, record; char *cptr, *ioptr; if (*status > 0) return(*status); if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); if ((fptr->Fptr)->curbuf < 0) /* no current data buffer for this file */ { /* so reload the last one that was used */ ffldrc(fptr, (long) (((fptr->Fptr)->bytepos) / IOBUFLEN), REPORT_EOF, status); } cptr = (char *)buffer; bcurrent = (fptr->Fptr)->curbuf; /* number of the current IO buffer */ record = (fptr->Fptr)->bufrecnum[bcurrent]; /* zero-indexed record number */ bufpos = (long) ((fptr->Fptr)->bytepos - ((LONGLONG)record * IOBUFLEN)); /* start pos */ nspace = IOBUFLEN - bufpos; /* amount of space left in buffer */ ioptr = (fptr->Fptr)->iobuffer + (bcurrent * IOBUFLEN) + bufpos; for (ii = 1; ii < ngroups; ii++) /* write all but the last group */ { /* copy bytes from user's buffer to the IO buffer */ nwrite = minvalue(gsize, nspace); memcpy(ioptr, cptr, nwrite); cptr += nwrite; /* increment buffer pointer */ if (nwrite < gsize) /* entire group did not fit */ { (fptr->Fptr)->dirty[bcurrent] = TRUE; /* mark record as having been modified */ record++; ffldrc(fptr, record, IGNORE_EOF, status); /* load next record */ bcurrent = (fptr->Fptr)->curbuf; ioptr = (fptr->Fptr)->iobuffer + (bcurrent * IOBUFLEN); nwrite = gsize - nwrite; memcpy(ioptr, cptr, nwrite); cptr += nwrite; /* increment buffer pointer */ ioptr += (offset + nwrite); /* increment IO buffer pointer */ nspace = IOBUFLEN - offset - nwrite; /* amount of space left */ } else { ioptr += (offset + nwrite); /* increment IO bufer pointer */ nspace -= (offset + nwrite); } if (nspace <= 0) /* beyond current record? */ { (fptr->Fptr)->dirty[bcurrent] = TRUE; record += ((IOBUFLEN - nspace) / IOBUFLEN); /* new record number */ ffldrc(fptr, record, IGNORE_EOF, status); bcurrent = (fptr->Fptr)->curbuf; bufpos = (-nspace) % IOBUFLEN; /* starting buffer pos */ nspace = IOBUFLEN - bufpos; ioptr = (fptr->Fptr)->iobuffer + (bcurrent * IOBUFLEN) + bufpos; } } /* now write the last group */ nwrite = minvalue(gsize, nspace); memcpy(ioptr, cptr, nwrite); cptr += nwrite; /* increment buffer pointer */ if (nwrite < gsize) /* entire group did not fit */ { (fptr->Fptr)->dirty[bcurrent] = TRUE; /* mark record as having been modified */ record++; ffldrc(fptr, record, IGNORE_EOF, status); /* load next record */ bcurrent = (fptr->Fptr)->curbuf; ioptr = (fptr->Fptr)->iobuffer + (bcurrent * IOBUFLEN); nwrite = gsize - nwrite; memcpy(ioptr, cptr, nwrite); } (fptr->Fptr)->dirty[bcurrent] = TRUE; /* mark record as having been modified */ (fptr->Fptr)->bytepos = (fptr->Fptr)->bytepos + (ngroups * gsize) + (ngroups - 1) * offset; return(*status); } /*--------------------------------------------------------------------------*/ int ffgbyt(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG nbytes, /* I - number of bytes to read */ void *buffer, /* O - buffer to read into */ int *status) /* IO - error status */ /* get (read) the requested number of bytes from the file, starting at the current file position. Read large blocks of data directly from disk; read smaller segments via intermediate IO buffers to improve efficiency. */ { int ii; LONGLONG filepos; long recstart, recend, ntodo, bufpos, nspace, nread; char *cptr; if (*status > 0) return(*status); if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); cptr = (char *)buffer; if (nbytes >= MINDIRECT) { /* read large blocks of data directly from disk instead of via buffers */ filepos = (fptr->Fptr)->bytepos; /* save the read starting position */ /* note that in this case, ffmbyt has not been called, and so */ /* bufrecnum[(fptr->Fptr)->curbuf] does not point to the intended */ /* output buffer */ recstart = (long) (filepos / IOBUFLEN); /* starting record */ recend = (long) ((filepos + nbytes - 1) / IOBUFLEN); /* ending record */ for (ii = 0; ii < NIOBUF; ii++) /* flush any affected buffers to disk */ { if ((fptr->Fptr)->dirty[ii] && (fptr->Fptr)->bufrecnum[ii] >= recstart && (fptr->Fptr)->bufrecnum[ii] <= recend) { ffbfwt(fptr->Fptr, ii, status); /* flush modified buffer to disk */ } } /* move to the correct read position */ if ((fptr->Fptr)->io_pos != filepos) ffseek(fptr->Fptr, filepos); ffread(fptr->Fptr, (long) nbytes, cptr, status); /* read the data */ (fptr->Fptr)->io_pos = filepos + nbytes; /* update the file position */ } else { /* read small chucks of data using the IO buffers for efficiency */ if ((fptr->Fptr)->curbuf < 0) /* no current data buffer for this file */ { /* so reload the last one that was used */ ffldrc(fptr, (long) (((fptr->Fptr)->bytepos) / IOBUFLEN), REPORT_EOF, status); } /* bufpos is the starting position in IO buffer */ bufpos = (long) ((fptr->Fptr)->bytepos - ((LONGLONG)(fptr->Fptr)->bufrecnum[(fptr->Fptr)->curbuf] * IOBUFLEN)); nspace = IOBUFLEN - bufpos; /* amount of space left in the buffer */ ntodo = (long) nbytes; while (ntodo) { nread = minvalue(ntodo, nspace); /* copy bytes from IO buffer to user's buffer */ memcpy(cptr, (fptr->Fptr)->iobuffer + ((fptr->Fptr)->curbuf * IOBUFLEN) + bufpos, nread); ntodo -= nread; /* decrement remaining number of bytes */ cptr += nread; (fptr->Fptr)->bytepos += nread; /* increment file position pointer */ if (ntodo) /* load next record into a buffer */ { ffldrc(fptr, (long) ((fptr->Fptr)->bytepos / IOBUFLEN), REPORT_EOF, status); bufpos = 0; nspace = IOBUFLEN; } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffgbytoff(fitsfile *fptr, /* I - FITS file pointer */ long gsize, /* I - size of each group of bytes */ long ngroups, /* I - number of groups to read */ long offset, /* I - size of gap between groups (may be < 0) */ void *buffer, /* I - buffer to be filled */ int *status) /* IO - error status */ /* get (read) the requested number of bytes from the file, starting at the current file position. This function combines ffmbyt and ffgbyt for increased efficiency. */ { int bcurrent; long ii, bufpos, nspace, nread, record; char *cptr, *ioptr; if (*status > 0) return(*status); if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); if ((fptr->Fptr)->curbuf < 0) /* no current data buffer for this file */ { /* so reload the last one that was used */ ffldrc(fptr, (long) (((fptr->Fptr)->bytepos) / IOBUFLEN), REPORT_EOF, status); } cptr = (char *)buffer; bcurrent = (fptr->Fptr)->curbuf; /* number of the current IO buffer */ record = (fptr->Fptr)->bufrecnum[bcurrent]; /* zero-indexed record number */ bufpos = (long) ((fptr->Fptr)->bytepos - ((LONGLONG)record * IOBUFLEN)); /* start pos */ nspace = IOBUFLEN - bufpos; /* amount of space left in buffer */ ioptr = (fptr->Fptr)->iobuffer + (bcurrent * IOBUFLEN) + bufpos; for (ii = 1; ii < ngroups; ii++) /* read all but the last group */ { /* copy bytes from IO buffer to the user's buffer */ nread = minvalue(gsize, nspace); memcpy(cptr, ioptr, nread); cptr += nread; /* increment buffer pointer */ if (nread < gsize) /* entire group did not fit */ { record++; ffldrc(fptr, record, REPORT_EOF, status); /* load next record */ bcurrent = (fptr->Fptr)->curbuf; ioptr = (fptr->Fptr)->iobuffer + (bcurrent * IOBUFLEN); nread = gsize - nread; memcpy(cptr, ioptr, nread); cptr += nread; /* increment buffer pointer */ ioptr += (offset + nread); /* increment IO buffer pointer */ nspace = IOBUFLEN - offset - nread; /* amount of space left */ } else { ioptr += (offset + nread); /* increment IO bufer pointer */ nspace -= (offset + nread); } if (nspace <= 0 || nspace > IOBUFLEN) /* beyond current record? */ { if (nspace <= 0) { record += ((IOBUFLEN - nspace) / IOBUFLEN); /* new record number */ bufpos = (-nspace) % IOBUFLEN; /* starting buffer pos */ } else { record -= ((nspace - 1 ) / IOBUFLEN); /* new record number */ bufpos = IOBUFLEN - (nspace % IOBUFLEN); /* starting buffer pos */ } ffldrc(fptr, record, REPORT_EOF, status); bcurrent = (fptr->Fptr)->curbuf; nspace = IOBUFLEN - bufpos; ioptr = (fptr->Fptr)->iobuffer + (bcurrent * IOBUFLEN) + bufpos; } } /* now read the last group */ nread = minvalue(gsize, nspace); memcpy(cptr, ioptr, nread); cptr += nread; /* increment buffer pointer */ if (nread < gsize) /* entire group did not fit */ { record++; ffldrc(fptr, record, REPORT_EOF, status); /* load next record */ bcurrent = (fptr->Fptr)->curbuf; ioptr = (fptr->Fptr)->iobuffer + (bcurrent * IOBUFLEN); nread = gsize - nread; memcpy(cptr, ioptr, nread); } (fptr->Fptr)->bytepos = (fptr->Fptr)->bytepos + (ngroups * gsize) + (ngroups - 1) * offset; return(*status); } /*--------------------------------------------------------------------------*/ int ffldrc(fitsfile *fptr, /* I - FITS file pointer */ long record, /* I - record number to be loaded */ int err_mode, /* I - 1=ignore EOF, 0 = return EOF error */ int *status) /* IO - error status */ { /* low-level routine to load a specified record from a file into a physical buffer, if it is not already loaded. Reset all pointers to make this the new current record for that file. Update ages of all the physical buffers. */ int ibuff, nbuff; LONGLONG rstart; /* check if record is already loaded in one of the buffers */ /* search from youngest to oldest buffer for efficiency */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); for (ibuff = NIOBUF - 1; ibuff >= 0; ibuff--) { nbuff = (fptr->Fptr)->ageindex[ibuff]; if (record == (fptr->Fptr)->bufrecnum[nbuff]) { goto updatebuf; /* use 'goto' for efficiency */ } } /* record is not already loaded */ rstart = (LONGLONG)record * IOBUFLEN; if ( !err_mode && (rstart >= (fptr->Fptr)->logfilesize) ) /* EOF? */ return(*status = END_OF_FILE); if (ffwhbf(fptr, &nbuff) < 0) /* which buffer should we reuse? */ return(*status = TOO_MANY_FILES); if ((fptr->Fptr)->dirty[nbuff]) ffbfwt(fptr->Fptr, nbuff, status); /* write dirty buffer to disk */ if (rstart >= (fptr->Fptr)->filesize) /* EOF? */ { /* initialize an empty buffer with the correct fill value */ if ((fptr->Fptr)->hdutype == ASCII_TBL) memset((fptr->Fptr)->iobuffer + (nbuff * IOBUFLEN), 32, IOBUFLEN); /* blank fill */ else memset((fptr->Fptr)->iobuffer + (nbuff * IOBUFLEN), 0, IOBUFLEN); /* zero fill */ (fptr->Fptr)->logfilesize = maxvalue((fptr->Fptr)->logfilesize, rstart + IOBUFLEN); (fptr->Fptr)->dirty[nbuff] = TRUE; /* mark record as having been modified */ } else /* not EOF, so read record from disk */ { if ((fptr->Fptr)->io_pos != rstart) ffseek(fptr->Fptr, rstart); ffread(fptr->Fptr, IOBUFLEN, (fptr->Fptr)->iobuffer + (nbuff * IOBUFLEN), status); (fptr->Fptr)->io_pos = rstart + IOBUFLEN; /* set new IO position */ } (fptr->Fptr)->bufrecnum[nbuff] = record; /* record number contained in buffer */ updatebuf: (fptr->Fptr)->curbuf = nbuff; /* this is the current buffer for this file */ if (ibuff < 0) { /* find the current position of the buffer in the age index */ for (ibuff = 0; ibuff < NIOBUF; ibuff++) if ((fptr->Fptr)->ageindex[ibuff] == nbuff) break; } /* increment the age of all the buffers that were younger than it */ for (ibuff++; ibuff < NIOBUF; ibuff++) (fptr->Fptr)->ageindex[ibuff - 1] = (fptr->Fptr)->ageindex[ibuff]; (fptr->Fptr)->ageindex[NIOBUF - 1] = nbuff; /* this is now the youngest buffer */ return(*status); } /*--------------------------------------------------------------------------*/ int ffwhbf(fitsfile *fptr, /* I - FITS file pointer */ int *nbuff) /* O - which buffer to use */ { /* decide which buffer to (re)use to hold a new file record */ return(*nbuff = (fptr->Fptr)->ageindex[0]); /* return oldest buffer */ } /*--------------------------------------------------------------------------*/ int ffflus(fitsfile *fptr, /* I - FITS file pointer */ int *status) /* IO - error status */ /* Flush all the data in the current FITS file to disk. This ensures that if the program subsequently dies, the disk FITS file will be closed correctly. */ { int hdunum, hdutype; if (*status > 0) return(*status); ffghdn(fptr, &hdunum); /* get the current HDU number */ if (ffchdu(fptr,status) > 0) /* close out the current HDU */ ffpmsg("ffflus could not close the current HDU."); ffflsh(fptr, FALSE, status); /* flush any modified IO buffers to disk */ if (ffgext(fptr, hdunum - 1, &hdutype, status) > 0) /* reopen HDU */ ffpmsg("ffflus could not reopen the current HDU."); return(*status); } /*--------------------------------------------------------------------------*/ int ffflsh(fitsfile *fptr, /* I - FITS file pointer */ int clearbuf, /* I - also clear buffer contents? */ int *status) /* IO - error status */ { /* flush all dirty IO buffers associated with the file to disk */ int ii; /* no need to move to a different HDU if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); */ for (ii = 0; ii < NIOBUF; ii++) { /* flush modified buffer to disk */ if ((fptr->Fptr)->bufrecnum[ii] >= 0 &&(fptr->Fptr)->dirty[ii]) ffbfwt(fptr->Fptr, ii, status); if (clearbuf) (fptr->Fptr)->bufrecnum[ii] = -1; /* set contents of buffer as undefined */ } if (*status != READONLY_FILE) ffflushx(fptr->Fptr); /* flush system buffers to disk */ return(*status); } /*--------------------------------------------------------------------------*/ int ffbfeof(fitsfile *fptr, /* I - FITS file pointer */ int *status) /* IO - error status */ { /* clear any buffers beyond the end of file */ int ii; for (ii = 0; ii < NIOBUF; ii++) { if ( (LONGLONG) (fptr->Fptr)->bufrecnum[ii] * IOBUFLEN >= fptr->Fptr->filesize) { (fptr->Fptr)->bufrecnum[ii] = -1; /* set contents of buffer as undefined */ } } return(*status); } /*--------------------------------------------------------------------------*/ int ffbfwt(FITSfile *Fptr, /* I - FITS file pointer */ int nbuff, /* I - which buffer to write */ int *status) /* IO - error status */ { /* write contents of buffer to file; If the position of the buffer is beyond the current EOF, then the file may need to be extended with fill values, and/or with the contents of some of the other i/o buffers. */ int ii,ibuff; long jj, irec, minrec, nloop; LONGLONG filepos; static char zeros[IOBUFLEN]; /* initialized to zero by default */ if (!(Fptr->writemode) ) { ffpmsg("Error: trying to write to READONLY file."); if (Fptr->driver == 8) { /* gzip compressed file */ ffpmsg("Cannot write to a GZIP or COMPRESS compressed file."); } Fptr->dirty[nbuff] = FALSE; /* reset buffer status to prevent later probs */ *status = READONLY_FILE; return(*status); } filepos = (LONGLONG)Fptr->bufrecnum[nbuff] * IOBUFLEN; if (filepos <= Fptr->filesize) { /* record is located within current file, so just write it */ /* move to the correct write position */ if (Fptr->io_pos != filepos) ffseek(Fptr, filepos); ffwrite(Fptr, IOBUFLEN, Fptr->iobuffer + (nbuff * IOBUFLEN), status); Fptr->io_pos = filepos + IOBUFLEN; if (filepos == Fptr->filesize) /* appended new record? */ Fptr->filesize += IOBUFLEN; /* increment the file size */ Fptr->dirty[nbuff] = FALSE; } else /* if record is beyond the EOF, append any other records */ /* and/or insert fill values if necessary */ { /* move to EOF */ if (Fptr->io_pos != Fptr->filesize) ffseek(Fptr, Fptr->filesize); ibuff = NIOBUF; /* initialize to impossible value */ while(ibuff != nbuff) /* repeat until requested buffer is written */ { minrec = (long) (Fptr->filesize / IOBUFLEN); /* write lowest record beyond the EOF first */ irec = Fptr->bufrecnum[nbuff]; /* initially point to the requested buffer */ ibuff = nbuff; for (ii = 0; ii < NIOBUF; ii++) { if (Fptr->bufrecnum[ii] >= minrec && Fptr->bufrecnum[ii] < irec) { irec = Fptr->bufrecnum[ii]; /* found a lower record */ ibuff = ii; } } filepos = (LONGLONG)irec * IOBUFLEN; /* byte offset of record in file */ /* append 1 or more fill records if necessary */ if (filepos > Fptr->filesize) { nloop = (long) ((filepos - (Fptr->filesize)) / IOBUFLEN); for (jj = 0; jj < nloop && !(*status); jj++) ffwrite(Fptr, IOBUFLEN, zeros, status); /* ffseek(Fptr, filepos); */ Fptr->filesize = filepos; /* increment the file size */ } /* write the buffer itself */ ffwrite(Fptr, IOBUFLEN, Fptr->iobuffer + (ibuff * IOBUFLEN), status); Fptr->dirty[ibuff] = FALSE; Fptr->filesize += IOBUFLEN; /* increment the file size */ } /* loop back if more buffers need to be written */ Fptr->io_pos = Fptr->filesize; /* currently positioned at EOF */ } return(*status); } /*--------------------------------------------------------------------------*/ int ffgrsz( fitsfile *fptr, /* I - FITS file pionter */ long *ndata, /* O - optimal amount of data to access */ int *status) /* IO - error status */ /* Returns an optimal value for the number of rows in a binary table or the number of pixels in an image that should be read or written at one time for maximum efficiency. Accessing more data than this may cause excessive flushing and rereading of buffers to/from disk. */ { int typecode, bytesperpixel; /* There are NIOBUF internal buffers available each IOBUFLEN bytes long. */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) /* rescan header to get hdu struct */ return(*status); if ((fptr->Fptr)->hdutype == IMAGE_HDU ) /* calc pixels per buffer size */ { /* image pixels are in column 2 of the 'table' */ ffgtcl(fptr, 2, &typecode, NULL, NULL, status); bytesperpixel = typecode / 10; *ndata = ((NIOBUF - 1) * IOBUFLEN) / bytesperpixel; } else /* calc number of rows that fit in buffers */ { *ndata = (long) (((NIOBUF - 1) * IOBUFLEN) / maxvalue(1, (fptr->Fptr)->rowlength)); *ndata = maxvalue(1, *ndata); } return(*status); } /*--------------------------------------------------------------------------*/ int ffgtbb(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG firstrow, /* I - starting row (1 = first row) */ LONGLONG firstchar, /* I - starting byte in row (1=first) */ LONGLONG nchars, /* I - number of bytes to read */ unsigned char *values, /* I - array of bytes to read */ int *status) /* IO - error status */ /* read a consecutive string of bytes from an ascii or binary table. This will span multiple rows of the table if nchars + firstchar is greater than the length of a row. */ { LONGLONG bytepos, endrow; if (*status > 0 || nchars <= 0) return(*status); else if (firstrow < 1) return(*status=BAD_ROW_NUM); else if (firstchar < 1) return(*status=BAD_ELEM_NUM); if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); /* check that we do not exceed number of rows in the table */ endrow = ((firstchar + nchars - 2) / (fptr->Fptr)->rowlength) + firstrow; if (endrow > (fptr->Fptr)->numrows) { ffpmsg("attempt to read past end of table (ffgtbb)"); return(*status=BAD_ROW_NUM); } /* move the i/o pointer to the start of the sequence of characters */ bytepos = (fptr->Fptr)->datastart + ((fptr->Fptr)->rowlength * (firstrow - 1)) + firstchar - 1; ffmbyt(fptr, bytepos, REPORT_EOF, status); ffgbyt(fptr, nchars, values, status); /* read the bytes */ return(*status); } /*--------------------------------------------------------------------------*/ int ffgi1b(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG byteloc, /* I - position within file to start reading */ long nvals, /* I - number of pixels to read */ long incre, /* I - byte increment between pixels */ unsigned char *values, /* O - returned array of values */ int *status) /* IO - error status */ /* get (read) the array of values from the FITS file, doing machine dependent format conversion (e.g. byte-swapping) if necessary. */ { LONGLONG postemp; if (incre == 1) /* read all the values at once (contiguous bytes) */ { if (nvals < MINDIRECT) /* read normally via IO buffers */ { ffmbyt(fptr, byteloc, REPORT_EOF, status); ffgbyt(fptr, nvals, values, status); } else /* read directly from disk, bypassing IO buffers */ { postemp = (fptr->Fptr)->bytepos; /* store current file position */ (fptr->Fptr)->bytepos = byteloc; /* set to the desired position */ ffgbyt(fptr, nvals, values, status); (fptr->Fptr)->bytepos = postemp; /* reset to original position */ } } else /* have to read each value individually (not contiguous ) */ { ffmbyt(fptr, byteloc, REPORT_EOF, status); ffgbytoff(fptr, 1, nvals, incre - 1, values, status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffgi2b(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG byteloc, /* I - position within file to start reading */ long nvals, /* I - number of pixels to read */ long incre, /* I - byte increment between pixels */ short *values, /* O - returned array of values */ int *status) /* IO - error status */ /* get (read) the array of values from the FITS file, doing machine dependent format conversion (e.g. byte-swapping) if necessary. */ { LONGLONG postemp; if (incre == 2) /* read all the values at once (contiguous bytes) */ { if (nvals * 2 < MINDIRECT) /* read normally via IO buffers */ { ffmbyt(fptr, byteloc, REPORT_EOF, status); ffgbyt(fptr, nvals * 2, values, status); } else /* read directly from disk, bypassing IO buffers */ { postemp = (fptr->Fptr)->bytepos; /* store current file position */ (fptr->Fptr)->bytepos = byteloc; /* set to the desired position */ ffgbyt(fptr, nvals * 2, values, status); (fptr->Fptr)->bytepos = postemp; /* reset to original position */ } } else /* have to read each value individually (not contiguous ) */ { ffmbyt(fptr, byteloc, REPORT_EOF, status); ffgbytoff(fptr, 2, nvals, incre - 2, values, status); } #if BYTESWAPPED ffswap2(values, nvals); /* reverse order of bytes in each value */ #endif return(*status); } /*--------------------------------------------------------------------------*/ int ffgi4b(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG byteloc, /* I - position within file to start reading */ long nvals, /* I - number of pixels to read */ long incre, /* I - byte increment between pixels */ INT32BIT *values, /* O - returned array of values */ int *status) /* IO - error status */ /* get (read) the array of values from the FITS file, doing machine dependent format conversion (e.g. byte-swapping) if necessary. */ { LONGLONG postemp; if (incre == 4) /* read all the values at once (contiguous bytes) */ { if (nvals * 4 < MINDIRECT) /* read normally via IO buffers */ { ffmbyt(fptr, byteloc, REPORT_EOF, status); ffgbyt(fptr, nvals * 4, values, status); } else /* read directly from disk, bypassing IO buffers */ { postemp = (fptr->Fptr)->bytepos; /* store current file position */ (fptr->Fptr)->bytepos = byteloc; /* set to the desired position */ ffgbyt(fptr, nvals * 4, values, status); (fptr->Fptr)->bytepos = postemp; /* reset to original position */ } } else /* have to read each value individually (not contiguous ) */ { ffmbyt(fptr, byteloc, REPORT_EOF, status); ffgbytoff(fptr, 4, nvals, incre - 4, values, status); } #if BYTESWAPPED ffswap4(values, nvals); /* reverse order of bytes in each value */ #endif return(*status); } /*--------------------------------------------------------------------------*/ int ffgi8b(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG byteloc, /* I - position within file to start reading */ long nvals, /* I - number of pixels to read */ long incre, /* I - byte increment between pixels */ long *values, /* O - returned array of values */ int *status) /* IO - error status */ /* get (read) the array of values from the FITS file, doing machine dependent format conversion (e.g. byte-swapping) if necessary. !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! This routine reads 'nvals' 8-byte integers into 'values'. This works both on platforms that have sizeof(long) = 64, and 32, as long as 'values' has been allocated to large enough to hold 8 * nvals bytes of data. !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! */ { LONGLONG postemp; if (incre == 8) /* read all the values at once (contiguous bytes) */ { if (nvals * 8 < MINDIRECT) /* read normally via IO buffers */ { ffmbyt(fptr, byteloc, REPORT_EOF, status); ffgbyt(fptr, nvals * 8, values, status); } else /* read directly from disk, bypassing IO buffers */ { postemp = (fptr->Fptr)->bytepos; /* store current file position */ (fptr->Fptr)->bytepos = byteloc; /* set to the desired position */ ffgbyt(fptr, nvals * 8, values, status); (fptr->Fptr)->bytepos = postemp; /* reset to original position */ } } else /* have to read each value individually (not contiguous ) */ { ffmbyt(fptr, byteloc, REPORT_EOF, status); ffgbytoff(fptr, 8, nvals, incre - 8, values, status); } #if BYTESWAPPED ffswap8((double *) values, nvals); /* reverse bytes in each value */ #endif return(*status); } /*--------------------------------------------------------------------------*/ int ffgr4b(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG byteloc, /* I - position within file to start reading */ long nvals, /* I - number of pixels to read */ long incre, /* I - byte increment between pixels */ float *values, /* O - returned array of values */ int *status) /* IO - error status */ /* get (read) the array of values from the FITS file, doing machine dependent format conversion (e.g. byte-swapping) if necessary. */ { LONGLONG postemp; #if MACHINE == VAXVMS long ii; #elif (MACHINE == ALPHAVMS) && (FLOATTYPE == GFLOAT) short *sptr; long ii; #endif if (incre == 4) /* read all the values at once (contiguous bytes) */ { if (nvals * 4 < MINDIRECT) /* read normally via IO buffers */ { ffmbyt(fptr, byteloc, REPORT_EOF, status); ffgbyt(fptr, nvals * 4, values, status); } else /* read directly from disk, bypassing IO buffers */ { postemp = (fptr->Fptr)->bytepos; /* store current file position */ (fptr->Fptr)->bytepos = byteloc; /* set to the desired position */ ffgbyt(fptr, nvals * 4, values, status); (fptr->Fptr)->bytepos = postemp; /* reset to original position */ } } else /* have to read each value individually (not contiguous ) */ { ffmbyt(fptr, byteloc, REPORT_EOF, status); ffgbytoff(fptr, 4, nvals, incre - 4, values, status); } #if MACHINE == VAXVMS ii = nvals; /* call VAX macro routine to convert */ ieevur(values, values, &ii); /* from IEEE float -> F float */ #elif (MACHINE == ALPHAVMS) && (FLOATTYPE == GFLOAT) ffswap2( (short *) values, nvals * 2); /* swap pairs of bytes */ /* convert from IEEE float format to VMS GFLOAT float format */ sptr = (short *) values; for (ii = 0; ii < nvals; ii++, sptr += 2) { if (!fnan(*sptr) ) /* test for NaN or underflow */ values[ii] *= 4.0; } #elif BYTESWAPPED ffswap4((INT32BIT *)values, nvals); /* reverse order of bytes in values */ #endif return(*status); } /*--------------------------------------------------------------------------*/ int ffgr8b(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG byteloc, /* I - position within file to start reading */ long nvals, /* I - number of pixels to read */ long incre, /* I - byte increment between pixels */ double *values, /* O - returned array of values */ int *status) /* IO - error status */ /* get (read) the array of values from the FITS file, doing machine dependent format conversion (e.g. byte-swapping) if necessary. */ { LONGLONG postemp; #if MACHINE == VAXVMS long ii; #elif (MACHINE == ALPHAVMS) && (FLOATTYPE == GFLOAT) short *sptr; long ii; #endif if (incre == 8) /* read all the values at once (contiguous bytes) */ { if (nvals * 8 < MINDIRECT) /* read normally via IO buffers */ { ffmbyt(fptr, byteloc, REPORT_EOF, status); ffgbyt(fptr, nvals * 8, values, status); } else /* read directly from disk, bypassing IO buffers */ { postemp = (fptr->Fptr)->bytepos; /* store current file position */ (fptr->Fptr)->bytepos = byteloc; /* set to the desired position */ ffgbyt(fptr, nvals * 8, values, status); (fptr->Fptr)->bytepos = postemp; /* reset to original position */ } } else /* have to read each value individually (not contiguous ) */ { ffmbyt(fptr, byteloc, REPORT_EOF, status); ffgbytoff(fptr, 8, nvals, incre - 8, values, status); } #if MACHINE == VAXVMS ii = nvals; /* call VAX macro routine to convert */ ieevud(values, values, &ii); /* from IEEE float -> D float */ #elif (MACHINE == ALPHAVMS) && (FLOATTYPE == GFLOAT) ffswap2( (short *) values, nvals * 4); /* swap pairs of bytes */ /* convert from IEEE float format to VMS GFLOAT float format */ sptr = (short *) values; for (ii = 0; ii < nvals; ii++, sptr += 4) { if (!dnan(*sptr) ) /* test for NaN or underflow */ values[ii] *= 4.0; } #elif BYTESWAPPED ffswap8(values, nvals); /* reverse order of bytes in each value */ #endif return(*status); } /*--------------------------------------------------------------------------*/ int ffptbb(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG firstrow, /* I - starting row (1 = first row) */ LONGLONG firstchar, /* I - starting byte in row (1=first) */ LONGLONG nchars, /* I - number of bytes to write */ unsigned char *values, /* I - array of bytes to write */ int *status) /* IO - error status */ /* write a consecutive string of bytes to an ascii or binary table. This will span multiple rows of the table if nchars + firstchar is greater than the length of a row. */ { LONGLONG bytepos, endrow, nrows; char message[81]; if (*status > 0 || nchars <= 0) return(*status); else if (firstrow < 1) return(*status=BAD_ROW_NUM); else if (firstchar < 1) return(*status=BAD_ELEM_NUM); if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); else if ((fptr->Fptr)->datastart < 0) /* rescan header if data undefined */ ffrdef(fptr, status); endrow = ((firstchar + nchars - 2) / (fptr->Fptr)->rowlength) + firstrow; /* check if we are writing beyond the current end of table */ if (endrow > (fptr->Fptr)->numrows) { /* if there are more HDUs following the current one, or */ /* if there is a data heap, then we must insert space */ /* for the new rows. */ if ( !((fptr->Fptr)->lasthdu) || (fptr->Fptr)->heapsize > 0) { nrows = endrow - ((fptr->Fptr)->numrows); /* ffirow also updates the heap address and numrows */ if (ffirow(fptr, (fptr->Fptr)->numrows, nrows, status) > 0) { sprintf(message, "ffptbb failed to add space for %.0f new rows in table.", (double) nrows); ffpmsg(message); return(*status); } } else { /* manally update heap starting address */ (fptr->Fptr)->heapstart += ((LONGLONG)(endrow - (fptr->Fptr)->numrows) * (fptr->Fptr)->rowlength ); (fptr->Fptr)->numrows = endrow; /* update number of rows */ } } /* move the i/o pointer to the start of the sequence of characters */ bytepos = (fptr->Fptr)->datastart + ((fptr->Fptr)->rowlength * (firstrow - 1)) + firstchar - 1; ffmbyt(fptr, bytepos, IGNORE_EOF, status); ffpbyt(fptr, nchars, values, status); /* write the bytes */ return(*status); } /*--------------------------------------------------------------------------*/ int ffpi1b(fitsfile *fptr, /* I - FITS file pointer */ long nvals, /* I - number of pixels in the values array */ long incre, /* I - byte increment between pixels */ unsigned char *values, /* I - array of values to write */ int *status) /* IO - error status */ /* put (write) the array of values to the FITS file, doing machine dependent format conversion (e.g. byte-swapping) if necessary. */ { if (incre == 1) /* write all the values at once (contiguous bytes) */ ffpbyt(fptr, nvals, values, status); else /* have to write each value individually (not contiguous ) */ ffpbytoff(fptr, 1, nvals, incre - 1, values, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffpi2b(fitsfile *fptr, /* I - FITS file pointer */ long nvals, /* I - number of pixels in the values array */ long incre, /* I - byte increment between pixels */ short *values, /* I - array of values to write */ int *status) /* IO - error status */ /* put (write) the array of values to the FITS file, doing machine dependent format conversion (e.g. byte-swapping) if necessary. */ { #if BYTESWAPPED ffswap2(values, nvals); /* reverse order of bytes in each value */ #endif if (incre == 2) /* write all the values at once (contiguous bytes) */ ffpbyt(fptr, nvals * 2, values, status); else /* have to write each value individually (not contiguous ) */ ffpbytoff(fptr, 2, nvals, incre - 2, values, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffpi4b(fitsfile *fptr, /* I - FITS file pointer */ long nvals, /* I - number of pixels in the values array */ long incre, /* I - byte increment between pixels */ INT32BIT *values, /* I - array of values to write */ int *status) /* IO - error status */ /* put (write) the array of values to the FITS file, doing machine dependent format conversion (e.g. byte-swapping) if necessary. */ { #if BYTESWAPPED ffswap4(values, nvals); /* reverse order of bytes in each value */ #endif if (incre == 4) /* write all the values at once (contiguous bytes) */ ffpbyt(fptr, nvals * 4, values, status); else /* have to write each value individually (not contiguous ) */ ffpbytoff(fptr, 4, nvals, incre - 4, values, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffpi8b(fitsfile *fptr, /* I - FITS file pointer */ long nvals, /* I - number of pixels in the values array */ long incre, /* I - byte increment between pixels */ long *values, /* I - array of values to write */ int *status) /* IO - error status */ /* put (write) the array of values to the FITS file, doing machine dependent format conversion (e.g. byte-swapping) if necessary. !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! This routine writes 'nvals' 8-byte integers from 'values'. This works both on platforms that have sizeof(long) = 64, and 32, as long as 'values' has been allocated to large enough to hold 8 * nvals bytes of data. !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! */ { #if BYTESWAPPED ffswap8((double *) values, nvals); /* reverse bytes in each value */ #endif if (incre == 8) /* write all the values at once (contiguous bytes) */ ffpbyt(fptr, nvals * 8, values, status); else /* have to write each value individually (not contiguous ) */ ffpbytoff(fptr, 8, nvals, incre - 8, values, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffpr4b(fitsfile *fptr, /* I - FITS file pointer */ long nvals, /* I - number of pixels in the values array */ long incre, /* I - byte increment between pixels */ float *values, /* I - array of values to write */ int *status) /* IO - error status */ /* put (write) the array of values to the FITS file, doing machine dependent format conversion (e.g. byte-swapping) if necessary. */ { #if MACHINE == VAXVMS long ii; ii = nvals; /* call VAX macro routine to convert */ ieevpr(values, values, &ii); /* from F float -> IEEE float */ #elif (MACHINE == ALPHAVMS) && (FLOATTYPE == GFLOAT) long ii; /* convert from VMS FFLOAT float format to IEEE float format */ for (ii = 0; ii < nvals; ii++) values[ii] *= 0.25; ffswap2( (short *) values, nvals * 2); /* swap pairs of bytes */ #elif BYTESWAPPED ffswap4((INT32BIT *) values, nvals); /* reverse order of bytes in values */ #endif if (incre == 4) /* write all the values at once (contiguous bytes) */ ffpbyt(fptr, nvals * 4, values, status); else /* have to write each value individually (not contiguous ) */ ffpbytoff(fptr, 4, nvals, incre - 4, values, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffpr8b(fitsfile *fptr, /* I - FITS file pointer */ long nvals, /* I - number of pixels in the values array */ long incre, /* I - byte increment between pixels */ double *values, /* I - array of values to write */ int *status) /* IO - error status */ /* put (write) the array of values to the FITS file, doing machine dependent format conversion (e.g. byte-swapping) if necessary. */ { #if MACHINE == VAXVMS long ii; ii = nvals; /* call VAX macro routine to convert */ ieevpd(values, values, &ii); /* from D float -> IEEE float */ #elif (MACHINE == ALPHAVMS) && (FLOATTYPE == GFLOAT) long ii; /* convert from VMS GFLOAT float format to IEEE float format */ for (ii = 0; ii < nvals; ii++) values[ii] *= 0.25; ffswap2( (short *) values, nvals * 4); /* swap pairs of bytes */ #elif BYTESWAPPED ffswap8(values, nvals); /* reverse order of bytes in each value */ #endif if (incre == 8) /* write all the values at once (contiguous bytes) */ ffpbyt(fptr, nvals * 8, values, status); else /* have to write each value individually (not contiguous ) */ ffpbytoff(fptr, 8, nvals, incre - 8, values, status); return(*status); } healpy-1.8.1/cfitsio/editcol.c0000654000175000017530000024527112272000775016657 0ustar zoncaplanck00000000000000/* This file, editcol.c, contains the set of FITSIO routines that */ /* insert or delete rows or columns in a table or resize an image */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffrsim(fitsfile *fptr, /* I - FITS file pointer */ int bitpix, /* I - bits per pixel */ int naxis, /* I - number of axes in the array */ long *naxes, /* I - size of each axis */ int *status) /* IO - error status */ /* resize an existing primary array or IMAGE extension. */ { LONGLONG tnaxes[99]; int ii; if (*status > 0) return(*status); for (ii = 0; (ii < naxis) && (ii < 99); ii++) tnaxes[ii] = naxes[ii]; ffrsimll(fptr, bitpix, naxis, tnaxes, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffrsimll(fitsfile *fptr, /* I - FITS file pointer */ int bitpix, /* I - bits per pixel */ int naxis, /* I - number of axes in the array */ LONGLONG *naxes, /* I - size of each axis */ int *status) /* IO - error status */ /* resize an existing primary array or IMAGE extension. */ { int ii, simple, obitpix, onaxis, extend, nmodify; long nblocks, longval; long pcount, gcount, longbitpix; LONGLONG onaxes[99], newsize, oldsize; char comment[FLEN_COMMENT], keyname[FLEN_KEYWORD], message[FLEN_ERRMSG]; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } /* rescan header if data structure is undefined */ else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) return(*status); /* get current image size parameters */ if (ffghprll(fptr, 99, &simple, &obitpix, &onaxis, onaxes, &pcount, &gcount, &extend, status) > 0) return(*status); longbitpix = bitpix; /* test for the 2 special cases that represent unsigned integers */ if (longbitpix == USHORT_IMG) longbitpix = SHORT_IMG; else if (longbitpix == ULONG_IMG) longbitpix = LONG_IMG; /* test that the new values are legal */ if (longbitpix != BYTE_IMG && longbitpix != SHORT_IMG && longbitpix != LONG_IMG && longbitpix != LONGLONG_IMG && longbitpix != FLOAT_IMG && longbitpix != DOUBLE_IMG) { sprintf(message, "Illegal value for BITPIX keyword: %d", bitpix); ffpmsg(message); return(*status = BAD_BITPIX); } if (naxis < 0 || naxis > 999) { sprintf(message, "Illegal value for NAXIS keyword: %d", naxis); ffpmsg(message); return(*status = BAD_NAXIS); } if (naxis == 0) newsize = 0; else newsize = 1; for (ii = 0; ii < naxis; ii++) { if (naxes[ii] < 0) { sprintf(message, "Illegal value for NAXIS%d keyword: %.0f", ii + 1, (double) (naxes[ii])); ffpmsg(message); return(*status = BAD_NAXES); } newsize *= naxes[ii]; /* compute new image size, in pixels */ } /* compute size of old image, in bytes */ if (onaxis == 0) oldsize = 0; else { oldsize = 1; for (ii = 0; ii < onaxis; ii++) oldsize *= onaxes[ii]; oldsize = (oldsize + pcount) * gcount * (abs(obitpix) / 8); } oldsize = (oldsize + 2879) / 2880; /* old size, in blocks */ newsize = (newsize + pcount) * gcount * (abs(longbitpix) / 8); newsize = (newsize + 2879) / 2880; /* new size, in blocks */ if (newsize > oldsize) /* have to insert new blocks for image */ { nblocks = (long) (newsize - oldsize); if (ffiblk(fptr, nblocks, 1, status) > 0) return(*status); } else if (oldsize > newsize) /* have to delete blocks from image */ { nblocks = (long) (oldsize - newsize); if (ffdblk(fptr, nblocks, status) > 0) return(*status); } /* now update the header keywords */ strcpy(comment,"&"); /* special value to leave comments unchanged */ if (longbitpix != obitpix) { /* update BITPIX value */ ffmkyj(fptr, "BITPIX", longbitpix, comment, status); } if (naxis != onaxis) { /* update NAXIS value */ longval = naxis; ffmkyj(fptr, "NAXIS", longval, comment, status); } /* modify the existing NAXISn keywords */ nmodify = minvalue(naxis, onaxis); for (ii = 0; ii < nmodify; ii++) { ffkeyn("NAXIS", ii+1, keyname, status); ffmkyj(fptr, keyname, naxes[ii], comment, status); } if (naxis > onaxis) /* insert additional NAXISn keywords */ { strcpy(comment,"length of data axis"); for (ii = onaxis; ii < naxis; ii++) { ffkeyn("NAXIS", ii+1, keyname, status); ffikyj(fptr, keyname, naxes[ii], comment, status); } } else if (onaxis > naxis) /* delete old NAXISn keywords */ { for (ii = naxis; ii < onaxis; ii++) { ffkeyn("NAXIS", ii+1, keyname, status); ffdkey(fptr, keyname, status); } } /* Update the BSCALE and BZERO keywords, if an unsigned integer image */ if (bitpix == USHORT_IMG) { strcpy(comment, "offset data range to that of unsigned short"); ffukyg(fptr, "BZERO", 32768., 0, comment, status); strcpy(comment, "default scaling factor"); ffukyg(fptr, "BSCALE", 1.0, 0, comment, status); } else if (bitpix == ULONG_IMG) { strcpy(comment, "offset data range to that of unsigned long"); ffukyg(fptr, "BZERO", 2147483648., 0, comment, status); strcpy(comment, "default scaling factor"); ffukyg(fptr, "BSCALE", 1.0, 0, comment, status); } /* re-read the header, to make sure structures are updated */ ffrdef(fptr, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffirow(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG firstrow, /* I - insert space AFTER this row */ /* 0 = insert space at beginning of table */ LONGLONG nrows, /* I - number of rows to insert */ int *status) /* IO - error status */ /* insert NROWS blank rows immediated after row firstrow (1 = first row). Set firstrow = 0 to insert space at the beginning of the table. */ { int tstatus; LONGLONG naxis1, naxis2; LONGLONG datasize, firstbyte, nshift, nbytes; LONGLONG freespace; long nblock; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } /* rescan header if data structure is undefined */ else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) return(*status); if ((fptr->Fptr)->hdutype == IMAGE_HDU) { ffpmsg("Can only add rows to TABLE or BINTABLE extension (ffirow)"); return(*status = NOT_TABLE); } if (nrows < 0 ) return(*status = NEG_BYTES); else if (nrows == 0) return(*status); /* no op, so just return */ /* get the current size of the table */ /* use internal structure since NAXIS2 keyword may not be up to date */ naxis1 = (fptr->Fptr)->rowlength; naxis2 = (fptr->Fptr)->numrows; if (firstrow > naxis2) { ffpmsg( "Insert position greater than the number of rows in the table (ffirow)"); return(*status = BAD_ROW_NUM); } else if (firstrow < 0) { ffpmsg("Insert position is less than 0 (ffirow)"); return(*status = BAD_ROW_NUM); } /* current data size */ datasize = (fptr->Fptr)->heapstart + (fptr->Fptr)->heapsize; freespace = ( ( (datasize + 2879) / 2880) * 2880) - datasize; nshift = naxis1 * nrows; /* no. of bytes to add to table */ if ( (freespace - nshift) < 0) /* not enough existing space? */ { nblock = (long) ((nshift - freespace + 2879) / 2880); /* number of blocks */ ffiblk(fptr, nblock, 1, status); /* insert the blocks */ } firstbyte = naxis1 * firstrow; /* relative insert position */ nbytes = datasize - firstbyte; /* no. of bytes to shift down */ firstbyte += ((fptr->Fptr)->datastart); /* absolute insert position */ ffshft(fptr, firstbyte, nbytes, nshift, status); /* shift rows and heap */ /* update the heap starting address */ (fptr->Fptr)->heapstart += nshift; /* update the THEAP keyword if it exists */ tstatus = 0; ffmkyj(fptr, "THEAP", (fptr->Fptr)->heapstart, "&", &tstatus); /* update the NAXIS2 keyword */ ffmkyj(fptr, "NAXIS2", naxis2 + nrows, "&", status); ((fptr->Fptr)->numrows) += nrows; ((fptr->Fptr)->origrows) += nrows; return(*status); } /*--------------------------------------------------------------------------*/ int ffdrow(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG firstrow, /* I - first row to delete (1 = first) */ LONGLONG nrows, /* I - number of rows to delete */ int *status) /* IO - error status */ /* delete NROWS rows from table starting with firstrow (1 = first row of table). */ { int tstatus; LONGLONG naxis1, naxis2; LONGLONG datasize, firstbyte, nbytes, nshift; LONGLONG freespace; long nblock; char comm[FLEN_COMMENT]; if (*status > 0) return(*status); if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } /* rescan header if data structure is undefined */ else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) return(*status); if ((fptr->Fptr)->hdutype == IMAGE_HDU) { ffpmsg("Can only delete rows in TABLE or BINTABLE extension (ffdrow)"); return(*status = NOT_TABLE); } if (nrows < 0 ) return(*status = NEG_BYTES); else if (nrows == 0) return(*status); /* no op, so just return */ ffgkyjj(fptr, "NAXIS1", &naxis1, comm, status); /* get the current */ /* ffgkyj(fptr, "NAXIS2", &naxis2, comm, status);*/ /* size of the table */ /* the NAXIS2 keyword may not be up to date, so use the structure value */ naxis2 = (fptr->Fptr)->numrows; if (firstrow > naxis2) { ffpmsg( "Delete position greater than the number of rows in the table (ffdrow)"); return(*status = BAD_ROW_NUM); } else if (firstrow < 1) { ffpmsg("Delete position is less than 1 (ffdrow)"); return(*status = BAD_ROW_NUM); } else if (firstrow + nrows - 1 > naxis2) { ffpmsg("No. of rows to delete exceeds size of table (ffdrow)"); return(*status = BAD_ROW_NUM); } nshift = naxis1 * nrows; /* no. of bytes to delete from table */ /* cur size of data */ datasize = (fptr->Fptr)->heapstart + (fptr->Fptr)->heapsize; firstbyte = naxis1 * (firstrow + nrows - 1); /* relative del pos */ nbytes = datasize - firstbyte; /* no. of bytes to shift up */ firstbyte += ((fptr->Fptr)->datastart); /* absolute delete position */ ffshft(fptr, firstbyte, nbytes, nshift * (-1), status); /* shift data */ freespace = ( ( (datasize + 2879) / 2880) * 2880) - datasize; nblock = (long) ((nshift + freespace) / 2880); /* number of blocks */ /* delete integral number blocks */ if (nblock > 0) ffdblk(fptr, nblock, status); /* update the heap starting address */ (fptr->Fptr)->heapstart -= nshift; /* update the THEAP keyword if it exists */ tstatus = 0; ffmkyj(fptr, "THEAP", (long)(fptr->Fptr)->heapstart, "&", &tstatus); /* update the NAXIS2 keyword */ ffmkyj(fptr, "NAXIS2", naxis2 - nrows, "&", status); ((fptr->Fptr)->numrows) -= nrows; ((fptr->Fptr)->origrows) -= nrows; /* Update the heap data, if any. This will remove any orphaned data */ /* that was only pointed to by the rows that have been deleted */ ffcmph(fptr, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffdrrg(fitsfile *fptr, /* I - FITS file pointer to table */ char *ranges, /* I - ranges of rows to delete (1 = first) */ int *status) /* IO - error status */ /* delete the ranges of rows from the table (1 = first row of table). The 'ranges' parameter typically looks like: '10-20, 30 - 40, 55' or '50-' and gives a list of rows or row ranges separated by commas. */ { char *cptr; int nranges, nranges2, ii; long *minrow, *maxrow, nrows, *rowarray, jj, kk; LONGLONG naxis2; if (*status > 0) return(*status); if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } /* rescan header if data structure is undefined */ else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) return(*status); if ((fptr->Fptr)->hdutype == IMAGE_HDU) { ffpmsg("Can only delete rows in TABLE or BINTABLE extension (ffdrrg)"); return(*status = NOT_TABLE); } /* the NAXIS2 keyword may not be up to date, so use the structure value */ naxis2 = (fptr->Fptr)->numrows; /* find how many ranges were specified ( = no. of commas in string + 1) */ cptr = ranges; for (nranges = 1; (cptr = strchr(cptr, ',')); nranges++) cptr++; minrow = calloc(nranges, sizeof(long)); maxrow = calloc(nranges, sizeof(long)); if (!minrow || !maxrow) { *status = MEMORY_ALLOCATION; ffpmsg("failed to allocate memory for row ranges (ffdrrg)"); if (maxrow) free(maxrow); if (minrow) free(minrow); return(*status); } /* parse range list into array of range min and max values */ ffrwrg(ranges, naxis2, nranges, &nranges2, minrow, maxrow, status); if (*status > 0 || nranges2 == 0) { free(maxrow); free(minrow); return(*status); } /* determine total number or rows to delete */ nrows = 0; for (ii = 0; ii < nranges2; ii++) { nrows = nrows + maxrow[ii] - minrow[ii] + 1; } rowarray = calloc(nrows, sizeof(long)); if (!rowarray) { *status = MEMORY_ALLOCATION; ffpmsg("failed to allocate memory for row array (ffdrrg)"); return(*status); } for (kk = 0, ii = 0; ii < nranges2; ii++) { for (jj = minrow[ii]; jj <= maxrow[ii]; jj++) { rowarray[kk] = jj; kk++; } } /* delete the rows */ ffdrws(fptr, rowarray, nrows, status); free(rowarray); free(maxrow); free(minrow); return(*status); } /*--------------------------------------------------------------------------*/ int ffdrws(fitsfile *fptr, /* I - FITS file pointer */ long *rownum, /* I - list of rows to delete (1 = first) */ long nrows, /* I - number of rows to delete */ int *status) /* IO - error status */ /* delete the list of rows from the table (1 = first row of table). */ { LONGLONG naxis1, naxis2, insertpos, nextrowpos; long ii, nextrow; char comm[FLEN_COMMENT]; unsigned char *buffer; if (*status > 0) return(*status); if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); /* rescan header if data structure is undefined */ if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) return(*status); if ((fptr->Fptr)->hdutype == IMAGE_HDU) { ffpmsg("Can only delete rows in TABLE or BINTABLE extension (ffdrws)"); return(*status = NOT_TABLE); } if (nrows < 0 ) return(*status = NEG_BYTES); else if (nrows == 0) return(*status); /* no op, so just return */ ffgkyjj(fptr, "NAXIS1", &naxis1, comm, status); /* row width */ ffgkyjj(fptr, "NAXIS2", &naxis2, comm, status); /* number of rows */ /* check that input row list is in ascending order */ for (ii = 1; ii < nrows; ii++) { if (rownum[ii - 1] >= rownum[ii]) { ffpmsg("row numbers are not in increasing order (ffdrws)"); return(*status = BAD_ROW_NUM); } } if (rownum[0] < 1) { ffpmsg("first row to delete is less than 1 (ffdrws)"); return(*status = BAD_ROW_NUM); } else if (rownum[nrows - 1] > naxis2) { ffpmsg("last row to delete exceeds size of table (ffdrws)"); return(*status = BAD_ROW_NUM); } buffer = (unsigned char *) malloc( (size_t) naxis1); /* buffer for one row */ if (!buffer) { ffpmsg("malloc failed (ffdrws)"); return(*status = MEMORY_ALLOCATION); } /* byte location to start of first row to delete, and the next row */ insertpos = (fptr->Fptr)->datastart + ((rownum[0] - 1) * naxis1); nextrowpos = insertpos + naxis1; nextrow = rownum[0] + 1; /* work through the list of rows to delete */ for (ii = 1; ii < nrows; nextrow++, nextrowpos += naxis1) { if (nextrow < rownum[ii]) { /* keep this row, so copy it to the new position */ ffmbyt(fptr, nextrowpos, REPORT_EOF, status); ffgbyt(fptr, naxis1, buffer, status); /* read the bytes */ ffmbyt(fptr, insertpos, IGNORE_EOF, status); ffpbyt(fptr, naxis1, buffer, status); /* write the bytes */ if (*status > 0) { ffpmsg("error while copying good rows in table (ffdrws)"); free(buffer); return(*status); } insertpos += naxis1; } else { /* skip over this row since it is in the list */ ii++; } } /* finished with all the rows to delete; copy remaining rows */ while(nextrow <= naxis2) { ffmbyt(fptr, nextrowpos, REPORT_EOF, status); ffgbyt(fptr, naxis1, buffer, status); /* read the bytes */ ffmbyt(fptr, insertpos, IGNORE_EOF, status); ffpbyt(fptr, naxis1, buffer, status); /* write the bytes */ if (*status > 0) { ffpmsg("failed to copy remaining rows in table (ffdrws)"); free(buffer); return(*status); } insertpos += naxis1; nextrowpos += naxis1; nextrow++; } free(buffer); /* now delete the empty rows at the end of the table */ ffdrow(fptr, naxis2 - nrows + 1, nrows, status); /* Update the heap data, if any. This will remove any orphaned data */ /* that was only pointed to by the rows that have been deleted */ ffcmph(fptr, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffdrwsll(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG *rownum, /* I - list of rows to delete (1 = first) */ LONGLONG nrows, /* I - number of rows to delete */ int *status) /* IO - error status */ /* delete the list of rows from the table (1 = first row of table). */ { LONGLONG insertpos, nextrowpos; LONGLONG naxis1, naxis2, ii, nextrow; char comm[FLEN_COMMENT]; unsigned char *buffer; if (*status > 0) return(*status); if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); /* rescan header if data structure is undefined */ if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) return(*status); if ((fptr->Fptr)->hdutype == IMAGE_HDU) { ffpmsg("Can only delete rows in TABLE or BINTABLE extension (ffdrws)"); return(*status = NOT_TABLE); } if (nrows < 0 ) return(*status = NEG_BYTES); else if (nrows == 0) return(*status); /* no op, so just return */ ffgkyjj(fptr, "NAXIS1", &naxis1, comm, status); /* row width */ ffgkyjj(fptr, "NAXIS2", &naxis2, comm, status); /* number of rows */ /* check that input row list is in ascending order */ for (ii = 1; ii < nrows; ii++) { if (rownum[ii - 1] >= rownum[ii]) { ffpmsg("row numbers are not in increasing order (ffdrws)"); return(*status = BAD_ROW_NUM); } } if (rownum[0] < 1) { ffpmsg("first row to delete is less than 1 (ffdrws)"); return(*status = BAD_ROW_NUM); } else if (rownum[nrows - 1] > naxis2) { ffpmsg("last row to delete exceeds size of table (ffdrws)"); return(*status = BAD_ROW_NUM); } buffer = (unsigned char *) malloc( (size_t) naxis1); /* buffer for one row */ if (!buffer) { ffpmsg("malloc failed (ffdrwsll)"); return(*status = MEMORY_ALLOCATION); } /* byte location to start of first row to delete, and the next row */ insertpos = (fptr->Fptr)->datastart + ((rownum[0] - 1) * naxis1); nextrowpos = insertpos + naxis1; nextrow = rownum[0] + 1; /* work through the list of rows to delete */ for (ii = 1; ii < nrows; nextrow++, nextrowpos += naxis1) { if (nextrow < rownum[ii]) { /* keep this row, so copy it to the new position */ ffmbyt(fptr, nextrowpos, REPORT_EOF, status); ffgbyt(fptr, naxis1, buffer, status); /* read the bytes */ ffmbyt(fptr, insertpos, IGNORE_EOF, status); ffpbyt(fptr, naxis1, buffer, status); /* write the bytes */ if (*status > 0) { ffpmsg("error while copying good rows in table (ffdrws)"); free(buffer); return(*status); } insertpos += naxis1; } else { /* skip over this row since it is in the list */ ii++; } } /* finished with all the rows to delete; copy remaining rows */ while(nextrow <= naxis2) { ffmbyt(fptr, nextrowpos, REPORT_EOF, status); ffgbyt(fptr, naxis1, buffer, status); /* read the bytes */ ffmbyt(fptr, insertpos, IGNORE_EOF, status); ffpbyt(fptr, naxis1, buffer, status); /* write the bytes */ if (*status > 0) { ffpmsg("failed to copy remaining rows in table (ffdrws)"); free(buffer); return(*status); } insertpos += naxis1; nextrowpos += naxis1; nextrow++; } free(buffer); /* now delete the empty rows at the end of the table */ ffdrow(fptr, naxis2 - nrows + 1, nrows, status); /* Update the heap data, if any. This will remove any orphaned data */ /* that was only pointed to by the rows that have been deleted */ ffcmph(fptr, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffrwrg( char *rowlist, /* I - list of rows and row ranges */ LONGLONG maxrows, /* I - number of rows in the table */ int maxranges, /* I - max number of ranges to be returned */ int *numranges, /* O - number ranges returned */ long *minrow, /* O - first row in each range */ long *maxrow, /* O - last row in each range */ int *status) /* IO - status value */ { /* parse the input list of row ranges, returning the number of ranges, and the min and max row value in each range. The only characters allowed in the input rowlist are decimal digits, minus sign, and comma (and non-significant spaces) Example: list = "10-20, 30-35,50" would return numranges = 3, minrow[] = {10, 30, 50}, maxrow[] = {20, 35, 50} error is returned if min value of range is > max value of range or if the ranges are not monotonically increasing. */ char *next; long minval, maxval; if (*status > 0) return(*status); if (maxrows <= 0 ) { *status = RANGE_PARSE_ERROR; ffpmsg("Input maximum range value is <= 0 (fits_parse_ranges)"); return(*status); } next = rowlist; *numranges = 0; while (*next == ' ')next++; /* skip spaces */ while (*next != '\0') { /* find min value of next range; *next must be '-' or a digit */ if (*next == '-') { minval = 1; /* implied minrow value = 1 */ } else if ( isdigit((int) *next) ) { minval = strtol(next, &next, 10); } else { *status = RANGE_PARSE_ERROR; ffpmsg("Syntax error in this row range list:"); ffpmsg(rowlist); return(*status); } while (*next == ' ')next++; /* skip spaces */ /* find max value of next range; *next must be '-', or ',' */ if (*next == '-') { next++; while (*next == ' ')next++; /* skip spaces */ if ( isdigit((int) *next) ) { maxval = strtol(next, &next, 10); } else if (*next == ',' || *next == '\0') { maxval = (long) maxrows; /* implied max value */ } else { *status = RANGE_PARSE_ERROR; ffpmsg("Syntax error in this row range list:"); ffpmsg(rowlist); return(*status); } } else if (*next == ',' || *next == '\0') { maxval = minval; /* only a single integer in this range */ } else { *status = RANGE_PARSE_ERROR; ffpmsg("Syntax error in this row range list:"); ffpmsg(rowlist); return(*status); } if (*numranges + 1 > maxranges) { *status = RANGE_PARSE_ERROR; ffpmsg("Overflowed maximum number of ranges (fits_parse_ranges)"); return(*status); } if (minval < 1 ) { *status = RANGE_PARSE_ERROR; ffpmsg("Syntax error in this row range list: row number < 1"); ffpmsg(rowlist); return(*status); } if (maxval < minval) { *status = RANGE_PARSE_ERROR; ffpmsg("Syntax error in this row range list: min > max"); ffpmsg(rowlist); return(*status); } if (*numranges > 0) { if (minval <= maxrow[(*numranges) - 1]) { *status = RANGE_PARSE_ERROR; ffpmsg("Syntax error in this row range list. Range minimum is"); ffpmsg(" less than or equal to previous range maximum"); ffpmsg(rowlist); return(*status); } } if (minval <= maxrows) { /* ignore range if greater than maxrows */ if (maxval > maxrows) maxval = (long) maxrows; minrow[*numranges] = minval; maxrow[*numranges] = maxval; (*numranges)++; } while (*next == ' ')next++; /* skip spaces */ if (*next == ',') { next++; while (*next == ' ')next++; /* skip more spaces */ } } if (*numranges == 0) { /* a null string was entered */ minrow[0] = 1; maxrow[0] = (long) maxrows; *numranges = 1; } return(*status); } /*--------------------------------------------------------------------------*/ int ffrwrgll( char *rowlist, /* I - list of rows and row ranges */ LONGLONG maxrows, /* I - number of rows in the list */ int maxranges, /* I - max number of ranges to be returned */ int *numranges, /* O - number ranges returned */ LONGLONG *minrow, /* O - first row in each range */ LONGLONG *maxrow, /* O - last row in each range */ int *status) /* IO - status value */ { /* parse the input list of row ranges, returning the number of ranges, and the min and max row value in each range. The only characters allowed in the input rowlist are decimal digits, minus sign, and comma (and non-significant spaces) Example: list = "10-20, 30-35,50" would return numranges = 3, minrow[] = {10, 30, 50}, maxrow[] = {20, 35, 50} error is returned if min value of range is > max value of range or if the ranges are not monotonically increasing. */ char *next; LONGLONG minval, maxval; double dvalue; if (*status > 0) return(*status); if (maxrows <= 0 ) { *status = RANGE_PARSE_ERROR; ffpmsg("Input maximum range value is <= 0 (fits_parse_ranges)"); return(*status); } next = rowlist; *numranges = 0; while (*next == ' ')next++; /* skip spaces */ while (*next != '\0') { /* find min value of next range; *next must be '-' or a digit */ if (*next == '-') { minval = 1; /* implied minrow value = 1 */ } else if ( isdigit((int) *next) ) { /* read as a double, because the string to LONGLONG function */ /* is platform dependent (strtoll, strtol, _atoI64) */ dvalue = strtod(next, &next); minval = (LONGLONG) (dvalue + 0.1); } else { *status = RANGE_PARSE_ERROR; ffpmsg("Syntax error in this row range list:"); ffpmsg(rowlist); return(*status); } while (*next == ' ')next++; /* skip spaces */ /* find max value of next range; *next must be '-', or ',' */ if (*next == '-') { next++; while (*next == ' ')next++; /* skip spaces */ if ( isdigit((int) *next) ) { /* read as a double, because the string to LONGLONG function */ /* is platform dependent (strtoll, strtol, _atoI64) */ dvalue = strtod(next, &next); maxval = (LONGLONG) (dvalue + 0.1); } else if (*next == ',' || *next == '\0') { maxval = maxrows; /* implied max value */ } else { *status = RANGE_PARSE_ERROR; ffpmsg("Syntax error in this row range list:"); ffpmsg(rowlist); return(*status); } } else if (*next == ',' || *next == '\0') { maxval = minval; /* only a single integer in this range */ } else { *status = RANGE_PARSE_ERROR; ffpmsg("Syntax error in this row range list:"); ffpmsg(rowlist); return(*status); } if (*numranges + 1 > maxranges) { *status = RANGE_PARSE_ERROR; ffpmsg("Overflowed maximum number of ranges (fits_parse_ranges)"); return(*status); } if (minval < 1 ) { *status = RANGE_PARSE_ERROR; ffpmsg("Syntax error in this row range list: row number < 1"); ffpmsg(rowlist); return(*status); } if (maxval < minval) { *status = RANGE_PARSE_ERROR; ffpmsg("Syntax error in this row range list: min > max"); ffpmsg(rowlist); return(*status); } if (*numranges > 0) { if (minval <= maxrow[(*numranges) - 1]) { *status = RANGE_PARSE_ERROR; ffpmsg("Syntax error in this row range list. Range minimum is"); ffpmsg(" less than or equal to previous range maximum"); ffpmsg(rowlist); return(*status); } } if (minval <= maxrows) { /* ignore range if greater than maxrows */ if (maxval > maxrows) maxval = maxrows; minrow[*numranges] = minval; maxrow[*numranges] = maxval; (*numranges)++; } while (*next == ' ')next++; /* skip spaces */ if (*next == ',') { next++; while (*next == ' ')next++; /* skip more spaces */ } } if (*numranges == 0) { /* a null string was entered */ minrow[0] = 1; maxrow[0] = maxrows; *numranges = 1; } return(*status); } /*--------------------------------------------------------------------------*/ int fficol(fitsfile *fptr, /* I - FITS file pointer */ int numcol, /* I - position for new col. (1 = 1st) */ char *ttype, /* I - name of column (TTYPE keyword) */ char *tform, /* I - format of column (TFORM keyword) */ int *status) /* IO - error status */ /* Insert a new column into an existing table at position numcol. If numcol is greater than the number of existing columns in the table then the new column will be appended as the last column in the table. */ { char *name, *format; name = ttype; format = tform; fficls(fptr, numcol, 1, &name, &format, status); return(*status); } /*--------------------------------------------------------------------------*/ int fficls(fitsfile *fptr, /* I - FITS file pointer */ int fstcol, /* I - position for first new col. (1 = 1st) */ int ncols, /* I - number of columns to insert */ char **ttype, /* I - array of column names(TTYPE keywords) */ char **tform, /* I - array of formats of column (TFORM) */ int *status) /* IO - error status */ /* Insert 1 or more new columns into an existing table at position numcol. If fstcol is greater than the number of existing columns in the table then the new column will be appended as the last column in the table. */ { int colnum, datacode, decims, tfields, tstatus, ii; LONGLONG datasize, firstbyte, nbytes, nadd, naxis1, naxis2, freespace; LONGLONG tbcol, firstcol, delbyte; long nblock, width, repeat; char tfm[FLEN_VALUE], keyname[FLEN_KEYWORD], comm[FLEN_COMMENT], *cptr; tcolumn *colptr; if (*status > 0) return(*status); if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } /* rescan header if data structure is undefined */ else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) return(*status); if ((fptr->Fptr)->hdutype == IMAGE_HDU) { ffpmsg("Can only add columns to TABLE or BINTABLE extension (fficol)"); return(*status = NOT_TABLE); } /* is the column number valid? */ tfields = (fptr->Fptr)->tfield; if (fstcol < 1 ) return(*status = BAD_COL_NUM); else if (fstcol > tfields) colnum = tfields + 1; /* append as last column */ else colnum = fstcol; /* parse the tform value and calc number of bytes to add to each row */ delbyte = 0; for (ii = 0; ii < ncols; ii++) { strcpy(tfm, tform[ii]); ffupch(tfm); /* make sure format is in upper case */ if ((fptr->Fptr)->hdutype == ASCII_TBL) { ffasfm(tfm, &datacode, &width, &decims, status); delbyte += width + 1; /* add one space between the columns */ } else { ffbnfm(tfm, &datacode, &repeat, &width, status); if (datacode < 0) { /* variable length array column */ if (strchr(tfm, 'Q')) delbyte += 16; else delbyte += 8; } else if (datacode == 1) /* bit column; round up */ delbyte += (repeat + 7) / 8; /* to multiple of 8 bits */ else if (datacode == 16) /* ASCII string column */ delbyte += repeat; else /* numerical data type */ delbyte += (datacode / 10) * repeat; } } if (*status > 0) return(*status); /* get the current size of the table */ /* use internal structure since NAXIS2 keyword may not be up to date */ naxis1 = (fptr->Fptr)->rowlength; naxis2 = (fptr->Fptr)->numrows; /* current size of data */ datasize = (fptr->Fptr)->heapstart + (fptr->Fptr)->heapsize; freespace = ( ( (datasize + 2879) / 2880) * 2880) - datasize; nadd = delbyte * naxis2; /* no. of bytes to add to table */ if ( (freespace - nadd) < 0) /* not enough existing space? */ { nblock = (long) ((nadd - freespace + 2879) / 2880); /* number of blocks */ if (ffiblk(fptr, nblock, 1, status) > 0) /* insert the blocks */ return(*status); } /* shift heap down (if it exists) */ if ((fptr->Fptr)->heapsize > 0) { nbytes = (fptr->Fptr)->heapsize; /* no. of bytes to shift down */ /* absolute heap pos */ firstbyte = (fptr->Fptr)->datastart + (fptr->Fptr)->heapstart; if (ffshft(fptr, firstbyte, nbytes, nadd, status) > 0) /* move heap */ return(*status); } /* update the heap starting address */ (fptr->Fptr)->heapstart += nadd; /* update the THEAP keyword if it exists */ tstatus = 0; ffmkyj(fptr, "THEAP", (fptr->Fptr)->heapstart, "&", &tstatus); /* calculate byte position in the row where to insert the new column */ if (colnum > tfields) firstcol = naxis1; else { colptr = (fptr->Fptr)->tableptr; colptr += (colnum - 1); firstcol = colptr->tbcol; } /* insert delbyte bytes in every row, at byte position firstcol */ ffcins(fptr, naxis1, naxis2, delbyte, firstcol, status); if ((fptr->Fptr)->hdutype == ASCII_TBL) { /* adjust the TBCOL values of the existing columns */ for(ii = 0; ii < tfields; ii++) { ffkeyn("TBCOL", ii + 1, keyname, status); ffgkyjj(fptr, keyname, &tbcol, comm, status); if (tbcol > firstcol) { tbcol += delbyte; ffmkyj(fptr, keyname, tbcol, "&", status); } } } /* update the mandatory keywords */ ffmkyj(fptr, "TFIELDS", tfields + ncols, "&", status); ffmkyj(fptr, "NAXIS1", naxis1 + delbyte, "&", status); /* increment the index value on any existing column keywords */ if(colnum <= tfields) ffkshf(fptr, colnum, tfields, ncols, status); /* add the required keywords for the new columns */ for (ii = 0; ii < ncols; ii++, colnum++) { strcpy(comm, "label for field"); ffkeyn("TTYPE", colnum, keyname, status); ffpkys(fptr, keyname, ttype[ii], comm, status); strcpy(comm, "format of field"); strcpy(tfm, tform[ii]); ffupch(tfm); /* make sure format is in upper case */ ffkeyn("TFORM", colnum, keyname, status); if (abs(datacode) == TSBYTE) { /* Replace the 'S' with an 'B' in the TFORMn code */ cptr = tfm; while (*cptr != 'S') cptr++; *cptr = 'B'; ffpkys(fptr, keyname, tfm, comm, status); /* write the TZEROn and TSCALn keywords */ ffkeyn("TZERO", colnum, keyname, status); strcpy(comm, "offset for signed bytes"); ffpkyg(fptr, keyname, -128., 0, comm, status); ffkeyn("TSCAL", colnum, keyname, status); strcpy(comm, "data are not scaled"); ffpkyg(fptr, keyname, 1., 0, comm, status); } else if (abs(datacode) == TUSHORT) { /* Replace the 'U' with an 'I' in the TFORMn code */ cptr = tfm; while (*cptr != 'U') cptr++; *cptr = 'I'; ffpkys(fptr, keyname, tfm, comm, status); /* write the TZEROn and TSCALn keywords */ ffkeyn("TZERO", colnum, keyname, status); strcpy(comm, "offset for unsigned integers"); ffpkyg(fptr, keyname, 32768., 0, comm, status); ffkeyn("TSCAL", colnum, keyname, status); strcpy(comm, "data are not scaled"); ffpkyg(fptr, keyname, 1., 0, comm, status); } else if (abs(datacode) == TULONG) { /* Replace the 'V' with an 'J' in the TFORMn code */ cptr = tfm; while (*cptr != 'V') cptr++; *cptr = 'J'; ffpkys(fptr, keyname, tfm, comm, status); /* write the TZEROn and TSCALn keywords */ ffkeyn("TZERO", colnum, keyname, status); strcpy(comm, "offset for unsigned integers"); ffpkyg(fptr, keyname, 2147483648., 0, comm, status); ffkeyn("TSCAL", colnum, keyname, status); strcpy(comm, "data are not scaled"); ffpkyg(fptr, keyname, 1., 0, comm, status); } else { ffpkys(fptr, keyname, tfm, comm, status); } if ((fptr->Fptr)->hdutype == ASCII_TBL) /* write the TBCOL keyword */ { if (colnum == tfields + 1) tbcol = firstcol + 2; /* allow space between preceding col */ else tbcol = firstcol + 1; strcpy(comm, "beginning column of field"); ffkeyn("TBCOL", colnum, keyname, status); ffpkyj(fptr, keyname, tbcol, comm, status); /* increment the column starting position for the next column */ ffasfm(tfm, &datacode, &width, &decims, status); firstcol += width + 1; /* add one space between the columns */ } } ffrdef(fptr, status); /* initialize the new table structure */ return(*status); } /*--------------------------------------------------------------------------*/ int ffmvec(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - position of col to be modified */ LONGLONG newveclen, /* I - new vector length of column (TFORM) */ int *status) /* IO - error status */ /* Modify the vector length of a column in a binary table, larger or smaller. E.g., change a column from TFORMn = '1E' to '20E'. */ { int datacode, tfields, tstatus; LONGLONG datasize, size, firstbyte, nbytes, nadd, ndelete; LONGLONG naxis1, naxis2, firstcol, freespace; LONGLONG width, delbyte, repeat; long nblock; char tfm[FLEN_VALUE], keyname[FLEN_KEYWORD], tcode[2]; tcolumn *colptr; if (*status > 0) return(*status); if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } /* rescan header if data structure is undefined */ else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) return(*status); if ((fptr->Fptr)->hdutype != BINARY_TBL) { ffpmsg( "Can only change vector length of a column in BINTABLE extension (ffmvec)"); return(*status = NOT_TABLE); } /* is the column number valid? */ tfields = (fptr->Fptr)->tfield; if (colnum < 1 || colnum > tfields) return(*status = BAD_COL_NUM); /* look up the current vector length and element width */ colptr = (fptr->Fptr)->tableptr; colptr += (colnum - 1); datacode = colptr->tdatatype; /* datatype of the column */ repeat = colptr->trepeat; /* field repeat count */ width = colptr->twidth; /* width of a single element in chars */ if (datacode < 0) { ffpmsg( "Can't modify vector length of variable length column (ffmvec)"); return(*status = BAD_TFORM); } if (repeat == newveclen) return(*status); /* column already has the desired vector length */ if (datacode == TSTRING) width = 1; /* width was equal to width of unit string */ naxis1 = (fptr->Fptr)->rowlength; /* current width of the table */ naxis2 = (fptr->Fptr)->numrows; delbyte = (newveclen - repeat) * width; /* no. of bytes to insert */ if (datacode == TBIT) /* BIT column is a special case */ delbyte = ((newveclen + 7) / 8) - ((repeat + 7) / 8); if (delbyte > 0) /* insert space for more elements */ { /* current size of data */ datasize = (fptr->Fptr)->heapstart + (fptr->Fptr)->heapsize; freespace = ( ( (datasize + 2879) / 2880) * 2880) - datasize; nadd = (LONGLONG)delbyte * naxis2; /* no. of bytes to add to table */ if ( (freespace - nadd) < 0) /* not enough existing space? */ { nblock = (long) ((nadd - freespace + 2879) / 2880); /* number of blocks */ if (ffiblk(fptr, nblock, 1, status) > 0) /* insert the blocks */ return(*status); } /* shift heap down (if it exists) */ if ((fptr->Fptr)->heapsize > 0) { nbytes = (fptr->Fptr)->heapsize; /* no. of bytes to shift down */ /* absolute heap pos */ firstbyte = (fptr->Fptr)->datastart + (fptr->Fptr)->heapstart; if (ffshft(fptr, firstbyte, nbytes, nadd, status) > 0) /* move heap */ return(*status); } /* update the heap starting address */ (fptr->Fptr)->heapstart += nadd; /* update the THEAP keyword if it exists */ tstatus = 0; ffmkyj(fptr, "THEAP", (fptr->Fptr)->heapstart, "&", &tstatus); firstcol = colptr->tbcol + (repeat * width); /* insert position */ /* insert delbyte bytes in every row, at byte position firstcol */ ffcins(fptr, naxis1, naxis2, delbyte, firstcol, status); } else if (delbyte < 0) { /* current size of table */ size = (fptr->Fptr)->heapstart + (fptr->Fptr)->heapsize; freespace = ((size + 2879) / 2880) * 2880 - size - ((LONGLONG)delbyte * naxis2); nblock = (long) (freespace / 2880); /* number of empty blocks to delete */ firstcol = colptr->tbcol + (newveclen * width); /* delete position */ /* delete elements from the vector */ ffcdel(fptr, naxis1, naxis2, -delbyte, firstcol, status); /* abs heap pos */ firstbyte = (fptr->Fptr)->datastart + (fptr->Fptr)->heapstart; ndelete = (LONGLONG)delbyte * naxis2; /* size of shift (negative) */ /* shift heap up (if it exists) */ if ((fptr->Fptr)->heapsize > 0) { nbytes = (fptr->Fptr)->heapsize; /* no. of bytes to shift up */ if (ffshft(fptr, firstbyte, nbytes, ndelete, status) > 0) return(*status); } /* delete the empty blocks at the end of the HDU */ if (nblock > 0) ffdblk(fptr, nblock, status); /* update the heap starting address */ (fptr->Fptr)->heapstart += ndelete; /* ndelete is negative */ /* update the THEAP keyword if it exists */ tstatus = 0; ffmkyj(fptr, "THEAP", (fptr->Fptr)->heapstart, "&", &tstatus); } /* construct the new TFORM keyword for the column */ if (datacode == TBIT) strcpy(tcode,"X"); else if (datacode == TBYTE) strcpy(tcode,"B"); else if (datacode == TLOGICAL) strcpy(tcode,"L"); else if (datacode == TSTRING) strcpy(tcode,"A"); else if (datacode == TSHORT) strcpy(tcode,"I"); else if (datacode == TLONG) strcpy(tcode,"J"); else if (datacode == TLONGLONG) strcpy(tcode,"K"); else if (datacode == TFLOAT) strcpy(tcode,"E"); else if (datacode == TDOUBLE) strcpy(tcode,"D"); else if (datacode == TCOMPLEX) strcpy(tcode,"C"); else if (datacode == TDBLCOMPLEX) strcpy(tcode,"M"); /* write as a double value because the LONGLONG conversion */ /* character in sprintf is platform dependent ( %lld, %ld, %I64d ) */ sprintf(tfm,"%.0f%s",(double) newveclen, tcode); ffkeyn("TFORM", colnum, keyname, status); /* Keyword name */ ffmkys(fptr, keyname, tfm, "&", status); /* modify TFORM keyword */ ffmkyj(fptr, "NAXIS1", naxis1 + delbyte, "&", status); /* modify NAXIS1 */ ffrdef(fptr, status); /* reinitialize the new table structure */ return(*status); } /*--------------------------------------------------------------------------*/ int ffcpcl(fitsfile *infptr, /* I - FITS file pointer to input file */ fitsfile *outfptr, /* I - FITS file pointer to output file */ int incol, /* I - number of input column */ int outcol, /* I - number for output column */ int create_col, /* I - create new col if TRUE, else overwrite */ int *status) /* IO - error status */ /* copy a column from infptr and insert it in the outfptr table. */ { int tstatus, colnum, typecode, anynull; long tfields, repeat, width, nrows, outrows; long inloop, outloop, maxloop, ndone, ntodo, npixels; long firstrow, firstelem, ii; char keyname[FLEN_KEYWORD], ttype[FLEN_VALUE], tform[FLEN_VALUE]; char ttype_comm[FLEN_COMMENT],tform_comm[FLEN_COMMENT]; char *lvalues = 0, nullflag, **strarray = 0; char nulstr[] = {'\5', '\0'}; /* unique null string value */ double dnull = 0.l, *dvalues = 0; float fnull = 0., *fvalues = 0; if (*status > 0) return(*status); if (infptr->HDUposition != (infptr->Fptr)->curhdu) { ffmahd(infptr, (infptr->HDUposition) + 1, NULL, status); } else if ((infptr->Fptr)->datastart == DATA_UNDEFINED) ffrdef(infptr, status); /* rescan header */ if (outfptr->HDUposition != (outfptr->Fptr)->curhdu) { ffmahd(outfptr, (outfptr->HDUposition) + 1, NULL, status); } else if ((outfptr->Fptr)->datastart == DATA_UNDEFINED) ffrdef(outfptr, status); /* rescan header */ if (*status > 0) return(*status); if ((infptr->Fptr)->hdutype == IMAGE_HDU || (outfptr->Fptr)->hdutype == IMAGE_HDU) { ffpmsg ("Can not copy columns to or from IMAGE HDUs (ffcpcl)"); return(*status = NOT_TABLE); } if ( (infptr->Fptr)->hdutype == BINARY_TBL && (outfptr->Fptr)->hdutype == ASCII_TBL) { ffpmsg ("Copying from Binary table to ASCII table is not supported (ffcpcl)"); return(*status = NOT_BTABLE); } /* get the datatype and vector repeat length of the column */ ffgtcl(infptr, incol, &typecode, &repeat, &width, status); if (typecode < 0) { ffpmsg("Variable-length columns are not supported (ffcpcl)"); return(*status = BAD_TFORM); } if (create_col) /* insert new column in output table? */ { tstatus = 0; ffkeyn("TTYPE", incol, keyname, &tstatus); ffgkys(infptr, keyname, ttype, ttype_comm, &tstatus); ffkeyn("TFORM", incol, keyname, &tstatus); if (ffgkys(infptr, keyname, tform, tform_comm, &tstatus) ) { ffpmsg ("Could not find TTYPE and TFORM keywords in input table (ffcpcl)"); return(*status = NO_TFORM); } if ((infptr->Fptr)->hdutype == ASCII_TBL && (outfptr->Fptr)->hdutype == BINARY_TBL) { /* convert from ASCII table to BINARY table format string */ if (typecode == TSTRING) ffnkey(width, "A", tform, status); else if (typecode == TLONG) strcpy(tform, "1J"); else if (typecode == TSHORT) strcpy(tform, "1I"); else if (typecode == TFLOAT) strcpy(tform,"1E"); else if (typecode == TDOUBLE) strcpy(tform,"1D"); } if (ffgkyj(outfptr, "TFIELDS", &tfields, 0, &tstatus)) { ffpmsg ("Could not read TFIELDS keyword in output table (ffcpcl)"); return(*status = NO_TFIELDS); } colnum = minvalue((int) tfields + 1, outcol); /* output col. number */ /* create the empty column */ if (fficol(outfptr, colnum, ttype, tform, status) > 0) { ffpmsg ("Could not append new column to output file (ffcpcl)"); return(*status); } /* copy the comment strings from the input file for TTYPE and TFORM */ tstatus = 0; ffkeyn("TTYPE", colnum, keyname, &tstatus); ffmcom(outfptr, keyname, ttype_comm, &tstatus); ffkeyn("TFORM", colnum, keyname, &tstatus); ffmcom(outfptr, keyname, tform_comm, &tstatus); /* copy other column-related keywords if they exist */ ffcpky(infptr, outfptr, incol, colnum, "TUNIT", status); ffcpky(infptr, outfptr, incol, colnum, "TSCAL", status); ffcpky(infptr, outfptr, incol, colnum, "TZERO", status); ffcpky(infptr, outfptr, incol, colnum, "TDISP", status); ffcpky(infptr, outfptr, incol, colnum, "TLMIN", status); ffcpky(infptr, outfptr, incol, colnum, "TLMAX", status); ffcpky(infptr, outfptr, incol, colnum, "TDIM", status); /* WCS keywords */ ffcpky(infptr, outfptr, incol, colnum, "TCTYP", status); ffcpky(infptr, outfptr, incol, colnum, "TCUNI", status); ffcpky(infptr, outfptr, incol, colnum, "TCRVL", status); ffcpky(infptr, outfptr, incol, colnum, "TCRPX", status); ffcpky(infptr, outfptr, incol, colnum, "TCDLT", status); ffcpky(infptr, outfptr, incol, colnum, "TCROT", status); if ((infptr->Fptr)->hdutype == ASCII_TBL && (outfptr->Fptr)->hdutype == BINARY_TBL) { /* binary tables only have TNULLn keyword for integer columns */ if (typecode == TLONG || typecode == TSHORT) { /* check if null string is defined; replace with integer */ ffkeyn("TNULL", incol, keyname, &tstatus); if (ffgkys(infptr, keyname, ttype, 0, &tstatus) <= 0) { ffkeyn("TNULL", colnum, keyname, &tstatus); if (typecode == TLONG) ffpkyj(outfptr, keyname, -9999999L, "Null value", status); else ffpkyj(outfptr, keyname, -32768L, "Null value", status); } } } else { ffcpky(infptr, outfptr, incol, colnum, "TNULL", status); } /* rescan header to recognize the new keywords */ if (ffrdef(outfptr, status) ) return(*status); } else { colnum = outcol; } ffgkyj(infptr, "NAXIS2", &nrows, 0, status); /* no. of input rows */ ffgkyj(outfptr, "NAXIS2", &outrows, 0, status); /* no. of output rows */ nrows = minvalue(nrows, outrows); if (typecode == TBIT) repeat = (repeat + 7) / 8; /* convert from bits to bytes */ else if (typecode == TSTRING && (infptr->Fptr)->hdutype == BINARY_TBL) repeat = repeat / width; /* convert from chars to unit strings */ /* get optimum number of rows to copy at one time */ ffgrsz(infptr, &inloop, status); ffgrsz(outfptr, &outloop, status); /* adjust optimum number, since 2 tables are open at once */ maxloop = minvalue(inloop, outloop); /* smallest of the 2 tables */ maxloop = maxvalue(1, maxloop / 2); /* at least 1 row */ maxloop = minvalue(maxloop, nrows); /* max = nrows to be copied */ maxloop *= repeat; /* mult by no of elements in a row */ /* allocate memory for arrays */ if (typecode == TLOGICAL) { lvalues = (char *) calloc(maxloop, sizeof(char) ); if (!lvalues) { ffpmsg ("malloc failed to get memory for logicals (ffcpcl)"); return(*status = ARRAY_TOO_BIG); } } else if (typecode == TSTRING) { /* allocate array of pointers */ strarray = (char **) calloc(maxloop, sizeof(strarray)); /* allocate space for each string */ for (ii = 0; ii < maxloop; ii++) strarray[ii] = (char *) calloc(width+1, sizeof(char)); } else if (typecode == TCOMPLEX) { fvalues = (float *) calloc(maxloop * 2, sizeof(float) ); if (!fvalues) { ffpmsg ("malloc failed to get memory for complex (ffcpcl)"); return(*status = ARRAY_TOO_BIG); } fnull = 0.; } else if (typecode == TDBLCOMPLEX) { dvalues = (double *) calloc(maxloop * 2, sizeof(double) ); if (!dvalues) { ffpmsg ("malloc failed to get memory for dbl complex (ffcpcl)"); return(*status = ARRAY_TOO_BIG); } dnull = 0.; } else /* numerical datatype; read them all as doubles */ { dvalues = (double *) calloc(maxloop, sizeof(double) ); if (!dvalues) { ffpmsg ("malloc failed to get memory for doubles (ffcpcl)"); return(*status = ARRAY_TOO_BIG); } dnull = -9.99991999E31; /* use an unlikely value for nulls */ } npixels = nrows * repeat; /* total no. of pixels to copy */ ntodo = minvalue(npixels, maxloop); /* no. to copy per iteration */ ndone = 0; /* total no. of pixels that have been copied */ while (ntodo) /* iterate through the table */ { firstrow = ndone / repeat + 1; firstelem = ndone - ((firstrow - 1) * repeat) + 1; /* read from input table */ if (typecode == TLOGICAL) ffgcl(infptr, incol, firstrow, firstelem, ntodo, lvalues, status); else if (typecode == TSTRING) ffgcvs(infptr, incol, firstrow, firstelem, ntodo, nulstr, strarray, &anynull, status); else if (typecode == TCOMPLEX) ffgcvc(infptr, incol, firstrow, firstelem, ntodo, fnull, fvalues, &anynull, status); else if (typecode == TDBLCOMPLEX) ffgcvm(infptr, incol, firstrow, firstelem, ntodo, dnull, dvalues, &anynull, status); else /* all numerical types */ ffgcvd(infptr, incol, firstrow, firstelem, ntodo, dnull, dvalues, &anynull, status); if (*status > 0) { ffpmsg("Error reading input copy of column (ffcpcl)"); break; } /* write to output table */ if (typecode == TLOGICAL) { nullflag = 2; ffpcnl(outfptr, colnum, firstrow, firstelem, ntodo, lvalues, nullflag, status); } else if (typecode == TSTRING) { if (anynull) ffpcns(outfptr, colnum, firstrow, firstelem, ntodo, strarray, nulstr, status); else ffpcls(outfptr, colnum, firstrow, firstelem, ntodo, strarray, status); } else if (typecode == TCOMPLEX) { /* doesn't support writing nulls */ ffpclc(outfptr, colnum, firstrow, firstelem, ntodo, fvalues, status); } else if (typecode == TDBLCOMPLEX) { /* doesn't support writing nulls */ ffpclm(outfptr, colnum, firstrow, firstelem, ntodo, dvalues, status); } else /* all other numerical types */ { if (anynull) ffpcnd(outfptr, colnum, firstrow, firstelem, ntodo, dvalues, dnull, status); else ffpcld(outfptr, colnum, firstrow, firstelem, ntodo, dvalues, status); } if (*status > 0) { ffpmsg("Error writing output copy of column (ffcpcl)"); break; } npixels -= ntodo; ndone += ntodo; ntodo = minvalue(npixels, maxloop); } /* free the previously allocated memory */ if (typecode == TLOGICAL) { free(lvalues); } else if (typecode == TSTRING) { for (ii = 0; ii < maxloop; ii++) free(strarray[ii]); free(strarray); } else { free(dvalues); } return(*status); } /*--------------------------------------------------------------------------*/ int ffcprw(fitsfile *infptr, /* I - FITS file pointer to input file */ fitsfile *outfptr, /* I - FITS file pointer to output file */ LONGLONG firstrow, /* I - number of first row to copy (1 based) */ LONGLONG nrows, /* I - number of rows to copy */ int *status) /* IO - error status */ /* copy consecutive set of rows from infptr and append it in the outfptr table. */ { LONGLONG innaxis1, innaxis2, outnaxis1, outnaxis2, ii, jj; unsigned char *buffer; if (*status > 0) return(*status); if (infptr->HDUposition != (infptr->Fptr)->curhdu) { ffmahd(infptr, (infptr->HDUposition) + 1, NULL, status); } else if ((infptr->Fptr)->datastart == DATA_UNDEFINED) ffrdef(infptr, status); /* rescan header */ if (outfptr->HDUposition != (outfptr->Fptr)->curhdu) { ffmahd(outfptr, (outfptr->HDUposition) + 1, NULL, status); } else if ((outfptr->Fptr)->datastart == DATA_UNDEFINED) ffrdef(outfptr, status); /* rescan header */ if (*status > 0) return(*status); if ((infptr->Fptr)->hdutype == IMAGE_HDU || (outfptr->Fptr)->hdutype == IMAGE_HDU) { ffpmsg ("Can not copy rows to or from IMAGE HDUs (ffcprw)"); return(*status = NOT_TABLE); } if ( ((infptr->Fptr)->hdutype == BINARY_TBL && (outfptr->Fptr)->hdutype == ASCII_TBL) || ((infptr->Fptr)->hdutype == ASCII_TBL && (outfptr->Fptr)->hdutype == BINARY_TBL) ) { ffpmsg ("Copying rows between Binary and ASCII tables is not supported (ffcprw)"); return(*status = NOT_BTABLE); } ffgkyjj(infptr, "NAXIS1", &innaxis1, 0, status); /* width of input rows */ ffgkyjj(infptr, "NAXIS2", &innaxis2, 0, status); /* no. of input rows */ ffgkyjj(outfptr, "NAXIS1", &outnaxis1, 0, status); /* width of output rows */ ffgkyjj(outfptr, "NAXIS2", &outnaxis2, 0, status); /* no. of output rows */ if (*status > 0) return(*status); if (outnaxis1 > innaxis1) { ffpmsg ("Input and output tables do not have same width (ffcprw)"); return(*status = BAD_ROW_WIDTH); } if (firstrow + nrows - 1 > innaxis2) { ffpmsg ("Not enough rows in input table to copy (ffcprw)"); return(*status = BAD_ROW_NUM); } /* allocate buffer to hold 1 row of data */ buffer = malloc( (size_t) innaxis1); if (!buffer) { ffpmsg ("Unable to allocate memory (ffcprw)"); return(*status = MEMORY_ALLOCATION); } /* copy the rows, 1 at a time */ jj = outnaxis2 + 1; for (ii = firstrow; ii < firstrow + nrows; ii++) { fits_read_tblbytes (infptr, ii, 1, innaxis1, buffer, status); fits_write_tblbytes(outfptr, jj, 1, innaxis1, buffer, status); jj++; } outnaxis2 += nrows; fits_update_key(outfptr, TLONGLONG, "NAXIS2", &outnaxis2, 0, status); free(buffer); return(*status); } /*--------------------------------------------------------------------------*/ int ffcpky(fitsfile *infptr, /* I - FITS file pointer to input file */ fitsfile *outfptr, /* I - FITS file pointer to output file */ int incol, /* I - input index number */ int outcol, /* I - output index number */ char *rootname, /* I - root name of the keyword to be copied */ int *status) /* IO - error status */ /* copy an indexed keyword from infptr to outfptr. */ { int tstatus = 0; char keyname[FLEN_KEYWORD]; char value[FLEN_VALUE], comment[FLEN_COMMENT], card[FLEN_CARD]; ffkeyn(rootname, incol, keyname, &tstatus); if (ffgkey(infptr, keyname, value, comment, &tstatus) <= 0) { ffkeyn(rootname, outcol, keyname, &tstatus); ffmkky(keyname, value, comment, card, status); ffprec(outfptr, card, status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffdcol(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - column to delete (1 = 1st) */ int *status) /* IO - error status */ /* Delete a column from a table. */ { int ii, tstatus; LONGLONG firstbyte, size, ndelete, nbytes, naxis1, naxis2, firstcol, delbyte, freespace; LONGLONG tbcol; long nblock, nspace; char keyname[FLEN_KEYWORD], comm[FLEN_COMMENT]; tcolumn *colptr, *nextcol; if (*status > 0) return(*status); if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } /* rescan header if data structure is undefined */ else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) return(*status); if ((fptr->Fptr)->hdutype == IMAGE_HDU) { ffpmsg ("Can only delete column from TABLE or BINTABLE extension (ffdcol)"); return(*status = NOT_TABLE); } if (colnum < 1 || colnum > (fptr->Fptr)->tfield ) return(*status = BAD_COL_NUM); colptr = (fptr->Fptr)->tableptr; colptr += (colnum - 1); firstcol = colptr->tbcol; /* starting byte position of the column */ /* use column width to determine how many bytes to delete in each row */ if ((fptr->Fptr)->hdutype == ASCII_TBL) { delbyte = colptr->twidth; /* width of ASCII column */ if (colnum < (fptr->Fptr)->tfield) /* check for space between next column */ { nextcol = colptr + 1; nspace = (long) ((nextcol->tbcol) - (colptr->tbcol) - delbyte); if (nspace > 0) delbyte++; } else if (colnum > 1) /* check for space between last 2 columns */ { nextcol = colptr - 1; nspace = (long) ((colptr->tbcol) - (nextcol->tbcol) - (nextcol->twidth)); if (nspace > 0) { delbyte++; firstcol--; /* delete the leading space */ } } } else /* a binary table */ { if (colnum < (fptr->Fptr)->tfield) { nextcol = colptr + 1; delbyte = (nextcol->tbcol) - (colptr->tbcol); } else { delbyte = ((fptr->Fptr)->rowlength) - (colptr->tbcol); } } naxis1 = (fptr->Fptr)->rowlength; /* current width of the table */ naxis2 = (fptr->Fptr)->numrows; /* current size of table */ size = (fptr->Fptr)->heapstart + (fptr->Fptr)->heapsize; freespace = ((LONGLONG)delbyte * naxis2) + ((size + 2879) / 2880) * 2880 - size; nblock = (long) (freespace / 2880); /* number of empty blocks to delete */ ffcdel(fptr, naxis1, naxis2, delbyte, firstcol, status); /* delete col */ /* absolute heap position */ firstbyte = (fptr->Fptr)->datastart + (fptr->Fptr)->heapstart; ndelete = (LONGLONG)delbyte * naxis2; /* size of shift */ /* shift heap up (if it exists) */ if ((fptr->Fptr)->heapsize > 0) { nbytes = (fptr->Fptr)->heapsize; /* no. of bytes to shift up */ if (ffshft(fptr, firstbyte, nbytes, -ndelete, status) > 0) /* mv heap */ return(*status); } /* delete the empty blocks at the end of the HDU */ if (nblock > 0) ffdblk(fptr, nblock, status); /* update the heap starting address */ (fptr->Fptr)->heapstart -= ndelete; /* update the THEAP keyword if it exists */ tstatus = 0; ffmkyj(fptr, "THEAP", (long)(fptr->Fptr)->heapstart, "&", &tstatus); if ((fptr->Fptr)->hdutype == ASCII_TBL) { /* adjust the TBCOL values of the remaining columns */ for (ii = 1; ii <= (fptr->Fptr)->tfield; ii++) { ffkeyn("TBCOL", ii, keyname, status); ffgkyjj(fptr, keyname, &tbcol, comm, status); if (tbcol > firstcol) { tbcol = tbcol - delbyte; ffmkyj(fptr, keyname, tbcol, "&", status); } } } /* update the mandatory keywords */ ffmkyj(fptr, "TFIELDS", ((fptr->Fptr)->tfield) - 1, "&", status); ffmkyj(fptr, "NAXIS1", naxis1 - delbyte, "&", status); /* delete the index keywords starting with 'T' associated with the deleted column and subtract 1 from index of all higher keywords */ ffkshf(fptr, colnum, (fptr->Fptr)->tfield, -1, status); ffrdef(fptr, status); /* initialize the new table structure */ return(*status); } /*--------------------------------------------------------------------------*/ int ffcins(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG naxis1, /* I - width of the table, in bytes */ LONGLONG naxis2, /* I - number of rows in the table */ LONGLONG ninsert, /* I - number of bytes to insert in each row */ LONGLONG bytepos, /* I - rel. position in row to insert bytes */ int *status) /* IO - error status */ /* Insert 'ninsert' bytes into each row of the table at position 'bytepos'. */ { unsigned char buffer[10000], cfill; LONGLONG newlen, fbyte, nbytes, irow, nseg, ii; if (*status > 0) return(*status); if (naxis2 == 0) return(*status); /* just return if there are 0 rows in the table */ /* select appropriate fill value */ if ((fptr->Fptr)->hdutype == ASCII_TBL) cfill = 32; /* ASCII tables use blank fill */ else cfill = 0; /* primary array and binary tables use zero fill */ newlen = naxis1 + ninsert; if (newlen <= 10000) { /******************************************************************* CASE #1: optimal case where whole new row fits in the work buffer *******************************************************************/ for (ii = 0; ii < ninsert; ii++) buffer[ii] = cfill; /* initialize buffer with fill value */ /* first move the trailing bytes (if any) in the last row */ fbyte = bytepos + 1; nbytes = naxis1 - bytepos; ffgtbb(fptr, naxis2, fbyte, nbytes, &buffer[ninsert], status); (fptr->Fptr)->rowlength = newlen; /* new row length */ /* write the row (with leading fill bytes) in the new place */ nbytes += ninsert; ffptbb(fptr, naxis2, fbyte, nbytes, buffer, status); (fptr->Fptr)->rowlength = naxis1; /* reset to orig. value */ /* now move the rest of the rows */ for (irow = naxis2 - 1; irow > 0; irow--) { /* read the row to be shifted (work backwards thru the table) */ ffgtbb(fptr, irow, fbyte, naxis1, &buffer[ninsert], status); (fptr->Fptr)->rowlength = newlen; /* new row length */ /* write the row (with the leading fill bytes) in the new place */ ffptbb(fptr, irow, fbyte, newlen, buffer, status); (fptr->Fptr)->rowlength = naxis1; /* reset to orig value */ } } else { /***************************************************************** CASE #2: whole row doesn't fit in work buffer; move row in pieces ****************************************************************** first copy the data, then go back and write fill into the new column start by copying the trailing bytes (if any) in the last row. */ nbytes = naxis1 - bytepos; nseg = (nbytes + 9999) / 10000; fbyte = (nseg - 1) * 10000 + bytepos + 1; nbytes = naxis1 - fbyte + 1; for (ii = 0; ii < nseg; ii++) { ffgtbb(fptr, naxis2, fbyte, nbytes, buffer, status); (fptr->Fptr)->rowlength = newlen; /* new row length */ ffptbb(fptr, naxis2, fbyte + ninsert, nbytes, buffer, status); (fptr->Fptr)->rowlength = naxis1; /* reset to orig value */ fbyte -= 10000; nbytes = 10000; } /* now move the rest of the rows */ nseg = (naxis1 + 9999) / 10000; for (irow = naxis2 - 1; irow > 0; irow--) { fbyte = (nseg - 1) * 10000 + bytepos + 1; nbytes = naxis1 - (nseg - 1) * 10000; for (ii = 0; ii < nseg; ii++) { /* read the row to be shifted (work backwards thru the table) */ ffgtbb(fptr, irow, fbyte, nbytes, buffer, status); (fptr->Fptr)->rowlength = newlen; /* new row length */ /* write the row in the new place */ ffptbb(fptr, irow, fbyte + ninsert, nbytes, buffer, status); (fptr->Fptr)->rowlength = naxis1; /* reset to orig value */ fbyte -= 10000; nbytes = 10000; } } /* now write the fill values into the new column */ nbytes = minvalue(ninsert, 10000); memset(buffer, cfill, (size_t) nbytes); /* initialize with fill value */ nseg = (ninsert + 9999) / 10000; (fptr->Fptr)->rowlength = newlen; /* new row length */ for (irow = 1; irow <= naxis2; irow++) { fbyte = bytepos + 1; nbytes = ninsert - ((nseg - 1) * 10000); for (ii = 0; ii < nseg; ii++) { ffptbb(fptr, irow, fbyte, nbytes, buffer, status); fbyte += nbytes; nbytes = 10000; } } (fptr->Fptr)->rowlength = naxis1; /* reset to orig value */ } return(*status); } /*--------------------------------------------------------------------------*/ int ffcdel(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG naxis1, /* I - width of the table, in bytes */ LONGLONG naxis2, /* I - number of rows in the table */ LONGLONG ndelete, /* I - number of bytes to delete in each row */ LONGLONG bytepos, /* I - rel. position in row to delete bytes */ int *status) /* IO - error status */ /* delete 'ndelete' bytes from each row of the table at position 'bytepos'. */ { unsigned char buffer[10000]; LONGLONG i1, i2, ii, irow, nseg; LONGLONG newlen, remain, nbytes; if (*status > 0) return(*status); if (naxis2 == 0) return(*status); /* just return if there are 0 rows in the table */ newlen = naxis1 - ndelete; if (newlen <= 10000) { /******************************************************************* CASE #1: optimal case where whole new row fits in the work buffer *******************************************************************/ i1 = bytepos + 1; i2 = i1 + ndelete; for (irow = 1; irow < naxis2; irow++) { ffgtbb(fptr, irow, i2, newlen, buffer, status); /* read row */ (fptr->Fptr)->rowlength = newlen; /* new row length */ ffptbb(fptr, irow, i1, newlen, buffer, status); /* write row */ (fptr->Fptr)->rowlength = naxis1; /* reset to orig value */ } /* now do the last row */ remain = naxis1 - (bytepos + ndelete); if (remain > 0) { ffgtbb(fptr, naxis2, i2, remain, buffer, status); /* read row */ (fptr->Fptr)->rowlength = newlen; /* new row length */ ffptbb(fptr, naxis2, i1, remain, buffer, status); /* write row */ (fptr->Fptr)->rowlength = naxis1; /* reset to orig value */ } } else { /***************************************************************** CASE #2: whole row doesn't fit in work buffer; move row in pieces ******************************************************************/ nseg = (newlen + 9999) / 10000; for (irow = 1; irow < naxis2; irow++) { i1 = bytepos + 1; i2 = i1 + ndelete; nbytes = newlen - (nseg - 1) * 10000; for (ii = 0; ii < nseg; ii++) { ffgtbb(fptr, irow, i2, nbytes, buffer, status); /* read bytes */ (fptr->Fptr)->rowlength = newlen; /* new row length */ ffptbb(fptr, irow, i1, nbytes, buffer, status); /* rewrite bytes */ (fptr->Fptr)->rowlength = naxis1; /* reset to orig value */ i1 += nbytes; i2 += nbytes; nbytes = 10000; } } /* now do the last row */ remain = naxis1 - (bytepos + ndelete); if (remain > 0) { nseg = (remain + 9999) / 10000; i1 = bytepos + 1; i2 = i1 + ndelete; nbytes = remain - (nseg - 1) * 10000; for (ii = 0; ii < nseg; ii++) { ffgtbb(fptr, naxis2, i2, nbytes, buffer, status); (fptr->Fptr)->rowlength = newlen; /* new row length */ ffptbb(fptr, naxis2, i1, nbytes, buffer, status); /* write row */ (fptr->Fptr)->rowlength = naxis1; /* reset to orig value */ i1 += nbytes; i2 += nbytes; nbytes = 10000; } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffkshf(fitsfile *fptr, /* I - FITS file pointer */ int colmin, /* I - starting col. to be incremented; 1 = 1st */ int colmax, /* I - last column to be incremented */ int incre, /* I - shift index number by this amount */ int *status) /* IO - error status */ /* shift the index value on any existing column keywords This routine will modify the name of any keyword that begins with 'T' and has an index number in the range COLMIN - COLMAX, inclusive. if incre is positive, then the index values will be incremented. if incre is negative, then the kewords with index = COLMIN will be deleted and the index of higher numbered keywords will be decremented. */ { int nkeys, nmore, nrec, tstatus, i1; long ivalue; char rec[FLEN_CARD], q[FLEN_KEYWORD], newkey[FLEN_KEYWORD]; ffghsp(fptr, &nkeys, &nmore, status); /* get number of keywords */ /* go thru header starting with the 9th keyword looking for 'TxxxxNNN' */ for (nrec = 9; nrec <= nkeys; nrec++) { ffgrec(fptr, nrec, rec, status); if (rec[0] == 'T') { i1 = 0; strncpy(q, &rec[1], 4); if (!strncmp(q, "BCOL", 4) || !strncmp(q, "FORM", 4) || !strncmp(q, "TYPE", 4) || !strncmp(q, "SCAL", 4) || !strncmp(q, "UNIT", 4) || !strncmp(q, "NULL", 4) || !strncmp(q, "ZERO", 4) || !strncmp(q, "DISP", 4) || !strncmp(q, "LMIN", 4) || !strncmp(q, "LMAX", 4) || !strncmp(q, "DMIN", 4) || !strncmp(q, "DMAX", 4) || !strncmp(q, "CTYP", 4) || !strncmp(q, "CRPX", 4) || !strncmp(q, "CRVL", 4) || !strncmp(q, "CDLT", 4) || !strncmp(q, "CROT", 4) || !strncmp(q, "CUNI", 4) ) i1 = 5; else if (!strncmp(rec, "TDIM", 4) ) i1 = 4; if (i1) { /* try reading the index number suffix */ q[0] = '\0'; strncat(q, &rec[i1], 8 - i1); tstatus = 0; ffc2ii(q, &ivalue, &tstatus); if (tstatus == 0 && ivalue >= colmin && ivalue <= colmax) { if (incre <= 0 && ivalue == colmin) { ffdrec(fptr, nrec, status); /* delete keyword */ nkeys = nkeys - 1; nrec = nrec - 1; } else { ivalue = ivalue + incre; q[0] = '\0'; strncat(q, rec, i1); ffkeyn(q, ivalue, newkey, status); strncpy(rec, " ", 8); /* erase old keyword name */ i1 = strlen(newkey); strncpy(rec, newkey, i1); /* overwrite new keyword name */ ffmrec(fptr, nrec, rec, status); /* modify the record */ } } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffshft(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG firstbyte, /* I - position of first byte in block to shift */ LONGLONG nbytes, /* I - size of block of bytes to shift */ LONGLONG nshift, /* I - size of shift in bytes (+ or -) */ int *status) /* IO - error status */ /* Shift block of bytes by nshift bytes (positive or negative). A positive nshift value moves the block down further in the file, while a negative value shifts the block towards the beginning of the file. */ { #define shftbuffsize 100000 long ntomov; LONGLONG ptr, ntodo; char buffer[shftbuffsize]; if (*status > 0) return(*status); ntodo = nbytes; /* total number of bytes to shift */ if (nshift > 0) /* start at the end of the block and work backwards */ ptr = firstbyte + nbytes; else /* start at the beginning of the block working forwards */ ptr = firstbyte; while (ntodo) { /* number of bytes to move at one time */ ntomov = (long) (minvalue(ntodo, shftbuffsize)); if (nshift > 0) /* if moving block down ... */ ptr -= ntomov; /* move to position and read the bytes to be moved */ ffmbyt(fptr, ptr, REPORT_EOF, status); ffgbyt(fptr, ntomov, buffer, status); /* move by shift amount and write the bytes */ ffmbyt(fptr, ptr + nshift, IGNORE_EOF, status); if (ffpbyt(fptr, ntomov, buffer, status) > 0) { ffpmsg("Error while shifting block (ffshft)"); return(*status); } ntodo -= ntomov; if (nshift < 0) /* if moving block up ... */ ptr += ntomov; } /* now overwrite the old data with fill */ if ((fptr->Fptr)->hdutype == ASCII_TBL) memset(buffer, 32, shftbuffsize); /* fill ASCII tables with spaces */ else memset(buffer, 0, shftbuffsize); /* fill other HDUs with zeros */ if (nshift < 0) { ntodo = -nshift; /* point to the end of the shifted block */ ptr = firstbyte + nbytes + nshift; } else { ntodo = nshift; /* point to original beginning of the block */ ptr = firstbyte; } ffmbyt(fptr, ptr, REPORT_EOF, status); while (ntodo) { ntomov = (long) (minvalue(ntodo, shftbuffsize)); ffpbyt(fptr, ntomov, buffer, status); ntodo -= ntomov; } return(*status); } healpy-1.8.1/cfitsio/putcolk.c0000654000175000017530000010566112272000775016713 0ustar zoncaplanck00000000000000/* This file, putcolk.c, contains routines that write data elements to */ /* a FITS image or table, with 'int' datatype. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffpprk( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to write(1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ int *array, /* I - array of values that are written */ int *status) /* IO - error status */ /* Write an array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long row; int nullvalue; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_write_compressed_pixels(fptr, TINT, firstelem, nelem, 0, array, &nullvalue, status); return(*status); } row=maxvalue(1,group); ffpclk(fptr, 2, row, firstelem, nelem, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffppnk( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to write(1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ int *array, /* I - array of values that are written */ int nulval, /* I - undefined pixel value */ int *status) /* IO - error status */ /* Write an array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). Any array values that are equal to the value of nulval will be replaced with the null pixel value that is appropriate for this column. */ { long row; int nullvalue; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ nullvalue = nulval; /* set local variable */ fits_write_compressed_pixels(fptr, TINT, firstelem, nelem, 1, array, &nullvalue, status); return(*status); } row=maxvalue(1,group); ffpcnk(fptr, 2, row, firstelem, nelem, array, nulval, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffp2dk(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ int *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write an entire 2-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { /* call the 3D writing routine, with the 3rd dimension = 1 */ ffp3dk(fptr, group, ncols, naxis2, naxis1, naxis2, 1, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffp3dk(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG nrows, /* I - number of rows in each plane of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ LONGLONG naxis3, /* I - FITS image NAXIS3 value */ int *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write an entire 3-D cube of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long tablerow, ii, jj; long fpixel[3]= {1,1,1}, lpixel[3]; LONGLONG nfits, narray; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ lpixel[0] = (long) ncols; lpixel[1] = (long) nrows; lpixel[2] = (long) naxis3; fits_write_compressed_img(fptr, TINT, fpixel, lpixel, 0, array, NULL, status); return(*status); } tablerow=maxvalue(1,group); if (ncols == naxis1 && nrows == naxis2) /* arrays have same size? */ { /* all the image pixels are contiguous, so write all at once */ ffpclk(fptr, 2, tablerow, 1L, naxis1 * naxis2 * naxis3, array, status); return(*status); } if (ncols < naxis1 || nrows < naxis2) return(*status = BAD_DIMEN); nfits = 1; /* next pixel in FITS image to write to */ narray = 0; /* next pixel in input array to be written */ /* loop over naxis3 planes in the data cube */ for (jj = 0; jj < naxis3; jj++) { /* loop over the naxis2 rows in the FITS image, */ /* writing naxis1 pixels to each row */ for (ii = 0; ii < naxis2; ii++) { if (ffpclk(fptr, 2, tablerow, nfits, naxis1,&array[narray],status) > 0) return(*status); nfits += naxis1; narray += ncols; } narray += (nrows - naxis2) * ncols; } return(*status); } /*--------------------------------------------------------------------------*/ int ffpssk(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ long naxis, /* I - number of data axes in array */ long *naxes, /* I - size of each FITS axis */ long *fpixel, /* I - 1st pixel in each axis to write (1=1st) */ long *lpixel, /* I - last pixel in each axis to write */ int *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write a subsection of pixels to the primary array or image. A subsection is defined to be any contiguous rectangular array of pixels within the n-dimensional FITS data file. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long tablerow; LONGLONG fpix[7], dimen[7], astart, pstart; LONGLONG off2, off3, off4, off5, off6, off7; LONGLONG st10, st20, st30, st40, st50, st60, st70; LONGLONG st1, st2, st3, st4, st5, st6, st7; long ii, i1, i2, i3, i4, i5, i6, i7, irange[7]; if (*status > 0) return(*status); if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_write_compressed_img(fptr, TINT, fpixel, lpixel, 0, array, NULL, status); return(*status); } if (naxis < 1 || naxis > 7) return(*status = BAD_DIMEN); tablerow=maxvalue(1,group); /* calculate the size and number of loops to perform in each dimension */ for (ii = 0; ii < 7; ii++) { fpix[ii]=1; irange[ii]=1; dimen[ii]=1; } for (ii = 0; ii < naxis; ii++) { fpix[ii]=fpixel[ii]; irange[ii]=lpixel[ii]-fpixel[ii]+1; dimen[ii]=naxes[ii]; } i1=irange[0]; /* compute the pixel offset between each dimension */ off2 = dimen[0]; off3 = off2 * dimen[1]; off4 = off3 * dimen[2]; off5 = off4 * dimen[3]; off6 = off5 * dimen[4]; off7 = off6 * dimen[5]; st10 = fpix[0]; st20 = (fpix[1] - 1) * off2; st30 = (fpix[2] - 1) * off3; st40 = (fpix[3] - 1) * off4; st50 = (fpix[4] - 1) * off5; st60 = (fpix[5] - 1) * off6; st70 = (fpix[6] - 1) * off7; /* store the initial offset in each dimension */ st1 = st10; st2 = st20; st3 = st30; st4 = st40; st5 = st50; st6 = st60; st7 = st70; astart = 0; for (i7 = 0; i7 < irange[6]; i7++) { for (i6 = 0; i6 < irange[5]; i6++) { for (i5 = 0; i5 < irange[4]; i5++) { for (i4 = 0; i4 < irange[3]; i4++) { for (i3 = 0; i3 < irange[2]; i3++) { pstart = st1 + st2 + st3 + st4 + st5 + st6 + st7; for (i2 = 0; i2 < irange[1]; i2++) { if (ffpclk(fptr, 2, tablerow, pstart, i1, &array[astart], status) > 0) return(*status); astart += i1; pstart += off2; } st2 = st20; st3 = st3+off3; } st3 = st30; st4 = st4+off4; } st4 = st40; st5 = st5+off5; } st5 = st50; st6 = st6+off6; } st6 = st60; st7 = st7+off7; } return(*status); } /*--------------------------------------------------------------------------*/ int ffpgpk( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ long firstelem, /* I - first vector element to write(1 = 1st) */ long nelem, /* I - number of values to write */ int *array, /* I - array of values that are written */ int *status) /* IO - error status */ /* Write an array of group parameters to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long row; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffpclk(fptr, 1L, row, firstelem, nelem, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffpclk( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ int *array, /* I - array of values to write */ int *status) /* IO - error status */ /* Write an array of values to a column in the current FITS HDU. The column number may refer to a real column in an ASCII or binary table, or it may refer to a virtual column in a 1 or more grouped FITS primary array. FITSIO treats a primary array as a binary table with 2 vector columns: the first column contains the group parameters (often with length = 0) and the second column contains the array of image pixels. Each row of the table represents a group in the case of multigroup FITS images. The input array of values will be converted to the datatype of the column and will be inverse-scaled by the FITS TSCALn and TZEROn values if necessary. */ { int tcode, maxelem2, hdutype, writeraw; long twidth, incre; long ntodo; LONGLONG repeat, startpos, elemnum, wrtptr, rowlen, rownum, remain, next, tnull, maxelem; double scale, zero; char tform[20], cform[20]; char message[FLEN_ERRMSG]; char snull[20]; /* the FITS null value */ double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */ void *buffer; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* call the 'short' or 'long' version of this routine, if possible */ if (sizeof(int) == sizeof(short)) ffpcli(fptr, colnum, firstrow, firstelem, nelem, (short *) array, status); else if (sizeof(int) == sizeof(long)) ffpclj(fptr, colnum, firstrow, firstelem, nelem, (long *) array, status); else { /* This is a special case: sizeof(int) is not equal to sizeof(short) or sizeof(long). This occurs on Alpha OSF systems where short = 2 bytes, int = 4 bytes, and long = 8 bytes. */ buffer = cbuff; /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if (ffgcprll( fptr, colnum, firstrow, firstelem, nelem, 1, &scale, &zero, tform, &twidth, &tcode, &maxelem2, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0) return(*status); maxelem = maxelem2; if (tcode == TSTRING) ffcfmt(tform, cform); /* derive C format for writing strings */ /* if there is no scaling and the native machine format is not byteswapped then we can simply write the raw data bytes into the FITS file if the datatype of the FITS column is the same as the input values. Otherwise we must convert the raw values into the scaled and/or machine dependent format in a temporary buffer that has been allocated for this purpose. */ if (scale == 1. && zero == 0. && MACHINE == NATIVE && tcode == TLONG) { writeraw = 1; if (nelem < (LONGLONG)INT32_MAX) { maxelem = nelem; } else { maxelem = INT32_MAX/4; } } else writeraw = 0; /*---------------------------------------------------------------------*/ /* Now write the pixels to the FITS column. */ /* First call the ffXXfYY routine to (1) convert the datatype */ /* if necessary, and (2) scale the values by the FITS TSCALn and */ /* TZEROn linear scaling parameters into a temporary buffer. */ /*---------------------------------------------------------------------*/ remain = nelem; /* remaining number of values to write */ next = 0; /* next element in array to be written */ rownum = 0; /* row number, relative to firstrow */ while (remain) { /* limit the number of pixels to process a one time to the number that will fit in the buffer space or to the number of pixels that remain in the current vector, which ever is smaller. */ ntodo = (long) minvalue(remain, maxelem); ntodo = (long) minvalue(ntodo, (repeat - elemnum)); wrtptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * incre); ffmbyt(fptr, wrtptr, IGNORE_EOF, status); /* move to write position */ switch (tcode) { case (TLONG): if (writeraw) { /* write raw input bytes without conversion */ ffpi4b(fptr, ntodo, incre, (INT32BIT *) &array[next], status); } else { /* convert the raw data before writing to FITS file */ ffintfi4(&array[next], ntodo, scale, zero, (INT32BIT *) buffer, status); ffpi4b(fptr, ntodo, incre, (INT32BIT *) buffer, status); } break; case (TLONGLONG): ffintfi8(&array[next], ntodo, scale, zero, (LONGLONG *) buffer, status); ffpi8b(fptr, ntodo, incre, (long *) buffer, status); break; case (TBYTE): ffintfi1(&array[next], ntodo, scale, zero, (unsigned char *) buffer, status); ffpi1b(fptr, ntodo, incre, (unsigned char *) buffer, status); break; case (TSHORT): ffintfi2(&array[next], ntodo, scale, zero, (short *) buffer, status); ffpi2b(fptr, ntodo, incre, (short *) buffer, status); break; case (TFLOAT): ffintfr4(&array[next], ntodo, scale, zero, (float *) buffer, status); ffpr4b(fptr, ntodo, incre, (float *) buffer, status); break; case (TDOUBLE): ffintfr8(&array[next], ntodo, scale, zero, (double *) buffer, status); ffpr8b(fptr, ntodo, incre, (double *) buffer, status); break; case (TSTRING): /* numerical column in an ASCII table */ if (cform[1] != 's') /* "%s" format is a string */ { ffintfstr(&array[next], ntodo, scale, zero, cform, twidth, (char *) buffer, status); if (incre == twidth) /* contiguous bytes */ ffpbyt(fptr, ntodo * twidth, buffer, status); else ffpbytoff(fptr, twidth, ntodo, incre - twidth, buffer, status); break; } /* can't write to string column, so fall thru to default: */ default: /* error trap */ sprintf(message, "Cannot write numbers to column %d which has format %s", colnum,tform); ffpmsg(message); if (hdutype == ASCII_TBL) return(*status = BAD_ATABLE_FORMAT); else return(*status = BAD_BTABLE_FORMAT); } /* End of switch block */ /*-------------------------*/ /* Check for fatal error */ /*-------------------------*/ if (*status > 0) /* test for error during previous write operation */ { sprintf(message, "Error writing elements %.0f thru %.0f of input data array (ffpclk).", (double) (next+1), (double) (next+ntodo)); ffpmsg(message); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain -= ntodo; if (remain) { next += ntodo; elemnum += ntodo; if (elemnum == repeat) /* completed a row; start on next row */ { elemnum = 0; rownum++; } } } /* End of main while Loop */ /*--------------------------------*/ /* check for numerical overflow */ /*--------------------------------*/ if (*status == OVERFLOW_ERR) { ffpmsg( "Numerical overflow during type conversion while writing FITS data."); *status = NUM_OVERFLOW; } } /* end of Dec ALPHA special case */ return(*status); } /*--------------------------------------------------------------------------*/ int ffpcnk( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ int *array, /* I - array of values to write */ int nulvalue, /* I - value used to flag undefined pixels */ int *status) /* IO - error status */ /* Write an array of elements to the specified column of a table. Any input pixels equal to the value of nulvalue will be replaced by the appropriate null value in the output FITS file. The input array of values will be converted to the datatype of the column and will be inverse-scaled by the FITS TSCALn and TZEROn values if necessary */ { tcolumn *colptr; LONGLONG ngood = 0, nbad = 0, ii; LONGLONG repeat, first, fstelm, fstrow; int tcode, overflow = 0; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) { if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); } colptr = (fptr->Fptr)->tableptr; /* point to first column */ colptr += (colnum - 1); /* offset to correct column structure */ tcode = colptr->tdatatype; if (tcode > 0) repeat = colptr->trepeat; /* repeat count for this column */ else repeat = firstelem -1 + nelem; /* variable length arrays */ /* if variable length array, first write the whole input vector, then go back and fill in the nulls */ if (tcode < 0) { if (ffpclk(fptr, colnum, firstrow, firstelem, nelem, array, status) > 0) { if (*status == NUM_OVERFLOW) { /* ignore overflows, which are possibly the null pixel values */ /* overflow = 1; */ *status = 0; } else { return(*status); } } } /* absolute element number in the column */ first = (firstrow - 1) * repeat + firstelem; for (ii = 0; ii < nelem; ii++) { if (array[ii] != nulvalue) /* is this a good pixel? */ { if (nbad) /* write previous string of bad pixels */ { fstelm = ii - nbad + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (ffpclu(fptr, colnum, fstrow, fstelm, nbad, status) > 0) return(*status); nbad=0; } ngood = ngood +1; /* the consecutive number of good pixels */ } else { if (ngood) /* write previous string of good pixels */ { fstelm = ii - ngood + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (tcode > 0) { /* variable length arrays have already been written */ if (ffpclk(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status) > 0) { if (*status == NUM_OVERFLOW) { overflow = 1; *status = 0; } else { return(*status); } } } ngood=0; } nbad = nbad +1; /* the consecutive number of bad pixels */ } } /* finished loop; now just write the last set of pixels */ if (ngood) /* write last string of good pixels */ { fstelm = ii - ngood + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (tcode > 0) { /* variable length arrays have already been written */ ffpclk(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status); } } else if (nbad) /* write last string of bad pixels */ { fstelm = ii - nbad + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ ffpclu(fptr, colnum, fstrow, fstelm, nbad, status); } if (*status <= 0) { if (overflow) { *status = NUM_OVERFLOW; } } return(*status); } /*--------------------------------------------------------------------------*/ int ffintfi1(int *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ unsigned char *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < 0) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > UCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = input[ii]; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) (dvalue + .5); } } return(*status); } /*--------------------------------------------------------------------------*/ int ffintfi2(int *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ short *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < SHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (input[ii] > SHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = input[ii]; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else { if (dvalue >= 0) output[ii] = (short) (dvalue + .5); else output[ii] = (short) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffintfi4(int *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ INT32BIT *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { memcpy(output, input, ntodo * sizeof(int) ); } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT32_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT32_MAX; } else { if (dvalue >= 0) output[ii] = (INT32BIT) (dvalue + .5); else output[ii] = (INT32BIT) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffintfi8(int *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ LONGLONG *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = input[ii]; } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (dvalue > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else { if (dvalue >= 0) output[ii] = (LONGLONG) (dvalue + .5); else output[ii] = (LONGLONG) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffintfr4(int *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ float *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = (float) input[ii]; } else { for (ii = 0; ii < ntodo; ii++) output[ii] = (float) ((input[ii] - zero) / scale); } return(*status); } /*--------------------------------------------------------------------------*/ int ffintfr8(int *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ double *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = (double) input[ii]; } else { for (ii = 0; ii < ntodo; ii++) output[ii] = (input[ii] - zero) / scale; } return(*status); } /*--------------------------------------------------------------------------*/ int ffintfstr(int *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ char *cform, /* I - format for output string values */ long twidth, /* I - width of each field, in chars */ char *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do scaling if required. */ { long ii; double dvalue; char *cptr; cptr = output; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { sprintf(output, cform, (double) input[ii]); output += twidth; if (*output) /* if this char != \0, then overflow occurred */ *status = OVERFLOW_ERR; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; sprintf(output, cform, dvalue); output += twidth; if (*output) /* if this char != \0, then overflow occurred */ *status = OVERFLOW_ERR; } } /* replace any commas with periods (e.g., in French locale) */ while ((cptr = strchr(cptr, ','))) *cptr = '.'; return(*status); } healpy-1.8.1/cfitsio/configure.in0000654000175000017530000004067412272000775017401 0ustar zoncaplanck00000000000000# # configure.in for cfitsio # # /redshift/sgi6/lheavc/ftools/cfitsio/configure.in,v 3.4 1996/07/26 20:27:53 pence Exp # # copied from host and modified # dnl Process this file with autoconf to produce a configure script. AC_INIT AC_CONFIG_SRCDIR([fitscore.c]) AC_CANONICAL_TARGET([]) #-------------------------------------------------------------------- # CFITSIO Version Numbers: #-------------------------------------------------------------------- AC_SUBST(CFITSIO_MAJOR,3) AC_SUBST(CFITSIO_MINOR,36) # Increment soname each time the interface changes: AC_SUBST(CFITSIO_SONAME,2) #-------------------------------------------------------------------- # Command options #-------------------------------------------------------------------- AC_ARG_ENABLE( reentrant, [AS_HELP_STRING([--enable-reentrant],[Enable reentrant multithreading])], [ if test $enableval = yes; then BUILD_REENTRANT=yes; fi ] ) SSE_FLAGS="" AC_ARG_ENABLE( sse2, [AS_HELP_STRING([--enable-sse2],[Enable use of instructions in the SSE2 extended instruction set])], [ if test $enableval = yes; then SSE_FLAGS="-msse2"; fi ] ) AC_ARG_ENABLE( ssse3, [AS_HELP_STRING([--enable-ssse3],[Enable use of instructions in the SSSE3 extended instruction set])], [ if test $enableval = yes; then SSE_FLAGS="$SSE_FLAGS -mssse3"; fi ] ) # Define BUILD_HERA when building for HERA project to activate code in # drvrfile.c (by way of fitsio2.h): AC_ARG_ENABLE( hera, [AS_HELP_STRING([--enable-hera],[Build for HERA (ASD use only)])], [ if test $enableval = yes; then BUILD_HERA=yes; fi ] ) if test "x$BUILD_HERA" = xyes; then AC_DEFINE(BUILD_HERA) fi AC_ARG_WITH( gsiftp-flavour, [AS_HELP_STRING([--with-gsiftp-flavour[[=PATH]]],[Enable Globus Toolkit gsiftp protocol support])], [ if test "x$withval" != "xno"; then if test "x$withval" != "xyes" ; then GSIFTP_FLAVOUR=${withval} fi AC_DEFINE(GSIFTP_FLAVOUR,1,[Define Globus Toolkit architecture]) fi ] ) AC_ARG_WITH( gsiftp, [AS_HELP_STRING([--with-gsiftp[[=PATH]]],[Enable Globus Toolkit gsiftp protocol support])], [ if test "x$withval" != "xno"; then if test "x$withval" != "xyes" ; then CFLAGS="$CFLAGS -I${withval}/include/${GSIFTP_FLAVOUR}" LDFLAGS="$LDFLAGS -L${withval}/lib -lglobus_ftp_client_${GSIFTP_FLAVOUR}" HAVE_GSIFTP=yes fi AC_DEFINE(HAVE_GSIFTP,1,[Define if you want Globus Toolkit gsiftp protocol support]) fi ] ) #-------------------------------------------------------------------- # Check for install location prefix #-------------------------------------------------------------------- AC_PREFIX_DEFAULT(`pwd`) # make will complain about duplicate targets for the install directories # if prefix == exec_prefix AC_SUBST(INSTALL_ROOT,'${prefix}') test "$exec_prefix" != NONE -a "$prefix" != "$exec_prefix" \ && INSTALL_ROOT="$INSTALL_ROOT "'${exec_prefix}' #-------------------------------------------------------------------- # System type #-------------------------------------------------------------------- case $host in *pc-cygwin*) ARCH="cygwin" EXT="cygwin" ;; *apple-darwin*) # Darwin can be powerpc, i386, or x86_64 ARCH=`uname -p` EXT="darwin" ;; *freebsd*) ARCH="linux" EXT="lnx" ;; *hpux*) ARCH="hp" EXT="hpu" ;; *irix*) ARCH="sgi" EXT="sgi" ;; *linux*) ARCH="linux" EXT="lnx" ;; *mingw32*) #ARCH="" EXT="mingw32" ;; *osf1*) ARCH="alpha" EXT="osf" ;; *solaris*) ARCH="solaris" EXT="sol" ;; *ultrix*) ARCH="dec" EXT="dec" ;; *) echo "cfitsio: == Don't know what do do with $host" ;; esac dnl Checks for programs. # Try first to find a proprietary C compiler, then gcc if test "x$EXT" != xcygwin && test "x$EXT" != xdarwin && test "x$EXT" != xlnx && test "x$EXT" != xmingw32; then if test "x$CC" = x; then AC_CHECK_PROGS(CC, cc) fi fi AC_PROG_CC if test "x$FC" = "xnone" ; then AC_MSG_NOTICE(cfitsio: == Fortran compiler search has been overridden) AC_MSG_NOTICE(cfitsio: == Cfitsio will be built without Fortran wrapper support) FC= F77_WRAPPERS= else AC_CHECK_PROGS(FC, gfortran g95 g77 f77 ifort f95 f90 xlf cf77 gf77 af77 ncf f2c, notfound) if test $FC = 'notfound' ; then AC_MSG_WARN(cfitsio: == No acceptable Fortran compiler found in \$PATH) AC_MSG_NOTICE(cfitsio: == Adding wrapper support for GNU Fortran by default) CFORTRANFLAGS="-Dg77Fortran" F77_WRAPPERS="\${FITSIO_SRC}" else CFORTRANFLAGS= F77_WRAPPERS="\${FITSIO_SRC}" echo $ac_n "checking whether we are using GNU Fortran""... $ac_c" 1>&6 if test `$FC --version -c < /dev/null 2> /dev/null | grep -c GNU` -gt 0 -o \ `$FC --version -c < /dev/null 2> /dev/null | grep -ic egcs` -gt 0 then echo "$ac_t""yes" 1>&6 echo $ac_n "cfitsio: == Adding wrapper support for GNU Fortran""... $ac_c" 1>&6 CFORTRANFLAGS="-Dg77Fortran" echo "$ac_t"" done" 1>&6 else echo "$ac_t""no" 1>&6 if test $FC = 'f2c' ; then echo $ac_n "cfitsio: == Adding wrapper support for f2c""... $ac_c" 1>&6 CFORTRANFLAGS="-Df2cFortran" echo "$ac_t"" done" 1>&6 fi fi fi fi # ar & ranlib required #--------------------- AC_CHECK_PROG(AR, ar, ar, noar) if test $AR = noar; then AC_MSG_ERROR(ar not found in your \$PATH. See your sysdamin.) fi ARCHIVE="$AR rv" AC_SUBST(ARCHIVE) AC_PROG_RANLIB dnl Checks for ANSI stdlib.h. AC_CHECK_HEADERS(stdlib.h string.h math.h limits.h ,ANSI_HEADER=yes,ANSI_HEADER=no)dnl dnl Check if prototyping is allowed. AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[]], [[void d( int , double) ]])],[PROTO=yes],[PROTO=no])dnl if test $ANSI_HEADER = no -o $PROTO = no; then echo " *********** WARNING: CFITSIO CONFIGURE FAILURE ************ " echo "cfitsio: ANSI C environment NOT found. Aborting cfitsio configure." if test $ANSI_HEADER = no; then echo "cfitsio: You're missing a needed ANSI header file." fi if test $PROTO = no; then echo "cfitsio: Your compiler can't do ANSI function prototypes." fi echo "cfitsio: You need an ANSI C compiler and all ANSI trappings" echo "cfitsio: to build cfitsio. " echo " ******************************************************* " exit 0; fi dnl Check if C compiler supports sse extended instruction flags. if test "x$SSE_FLAGS" != x; then SAVE_CFLAGS="$CFLAGS" CFLAGS="$CFLAGS $SSE_FLAGS" AC_MSG_CHECKING([whether $CC accepts $SSE_FLAGS]) AC_LANG_PUSH([C]) AC_COMPILE_IFELSE([AC_LANG_PROGRAM([])],[c_has_option=yes],[c_has_option=no]) AC_MSG_RESULT($c_has_option) AC_LANG_POP([]) if test "$c_has_option" = no; then SSE_FLAGS=""; fi CFLAGS="$SAVE_CFLAGS" fi AC_SUBST(SSE_FLAGS) CFLAGS="$CFLAGS" LIBPRE="" case $host in *pc-cygwin*) CFLAGS="$CFLAGS -DHAVE_POSIX_SIGNALS" ;; *apple-darwin*) # Build for i386 & x86_64 architectures on Darwin 10.x or newer: changequote(,) case $host in *darwin[56789]*) ;; *) changequote([,]) # Test to see whether the C compiler accepts the "-arch" # flags for building "universal" binaries (Apple XCode only): SAVE_CFLAGS="$CFLAGS" C_UNIV_SWITCH="-arch i386 -arch x86_64" CFLAGS="$CFLAGS $C_UNIV_SWITCH" AC_MSG_CHECKING([whether $CC accepts $C_UNIV_SWITCH]) AC_LANG_PUSH([C]) AC_COMPILE_IFELSE([AC_LANG_PROGRAM([])],[c_has_option=yes],[c_has_option=no]) AC_MSG_RESULT($c_has_option) AC_LANG_POP([]) # Value of C_UNIV_SWITCH will be needed later for SHLIB_LD: if test "$c_has_option" = no; then C_UNIV_SWITCH=""; fi CFLAGS="$SAVE_CFLAGS $C_UNIV_SWITCH" ;; esac # For large file support (but may break Absoft compilers): AC_DEFINE(_LARGEFILE_SOURCE) AC_DEFINE(_FILE_OFFSET_BITS,64) ;; *hpux*) if test "x$CFORTRANFLAGS" = x ; then CFORTRANFLAGS="-Dappendus" fi CFLAGS="$CFLAGS -DPG_PPU" LIBPRE="-Wl," ;; *irix*) CFLAGS="$CFLAGS -DHAVE_POSIX_SIGNALS" RANLIB="touch" ;; *linux*) # For large file support: AC_DEFINE(_LARGEFILE_SOURCE) AC_DEFINE(_FILE_OFFSET_BITS,64) ;; *mingw32*) AC_MSG_CHECKING([for large file support]) AC_COMPILE_IFELSE([AC_LANG_PROGRAM([#include ], [_FILE_OFFSET_BITS_SET_FSEEKO])],[ AC_DEFINE(_LARGEFILE_SOURCE) AC_DEFINE(_FILE_OFFSET_BITS,64) AC_MSG_RESULT(yes) ],[AC_MSG_RESULT(no)]) ;; *solaris*) if test "x$CFORTRANFLAGS" = x ; then CFORTRANFLAGS="-Dsolaris" fi # We need libm on Solaris: AC_CHECK_LIB(m, frexp) # For large file support: AC_DEFINE(_LARGEFILE_SOURCE) AC_DEFINE(_FILE_OFFSET_BITS,64) ;; *) echo "cfitsio: == Don't know what do do with $host" ;; esac CFLAGS="$CFLAGS $CFORTRANFLAGS" case $GCC in yes) GCCVERSION="`$CC -dumpversion 2>&1`" echo "cfitsio: == Using gcc version $GCCVERSION" AC_SUBST(GCCVERSION) changequote(,) gcc_test=`echo $GCCVERSION | grep -c '2\.[45678]'` changequote([,]) if test $gcc_test -gt 0 then changequote(,) CFLAGS=`echo $CFLAGS | sed 's:-O[^ ]* *::'` changequote([,]) AC_MSG_WARN(This gcc is pretty old. Disabling optimization to be safe.) fi ;; no) echo "cfitsio: Old CFLAGS is $CFLAGS" CFLAGS=`echo $CFLAGS | sed -e "s/-g/-O/"` case $host in *solaris*) changequote(,) if test `echo $CFLAGS | grep -c fast` -gt 0 then echo "cfitsio: Replacing -fast with -O3" CFLAGS=`echo $CFLAGS | sed 's:-fast:-O3:'` fi changequote([,]) CFLAGS="$CFLAGS -DHAVE_ALLOCA_H -DHAVE_POSIX_SIGNALS" ;; *) echo "== No special changes for $host" ;; esac echo "New CFLAGS is $CFLAGS" ;; *) # Don't do anything now ;; esac # Shared library section #------------------------------------------------------------------------------- SHLIB_LD=: SHLIB_SUFFIX=".so" CFITSIO_SHLIB="" CFITSIO_SHLIB_SONAME="" lhea_shlib_cflags= case $EXT in cygwin) SHLIB_LD="$CC -shared" SHLIB_SUFFIX=".dll" ;; darwin) changequote(,) SHLIB_SUFFIX=".dylib" CFITSIO_SHLIB="libcfitsio.\${CFITSIO_SONAME}.\${CFITSIO_MAJOR}.\${CFITSIO_MINOR}\${SHLIB_SUFFIX}" CFITSIO_SHLIB_SONAME="libcfitsio.\${CFITSIO_SONAME}\${SHLIB_SUFFIX}" case $host in *darwin[56789]*) SHLIB_LD="$CC -dynamiclib -install_name libcfitsio.\${CFITSIO_SONAME}\${SHLIB_SUFFIX} -compatibility_version \${CFITSIO_SONAME} -current_version \${CFITSIO_SONAME}.\${CFITSIO_MAJOR}.\${CFITSIO_MINOR}" ;; *) # Build for i386 & x86_64 architectures on Darwin 10.x or newer: SHLIB_LD="$CC -dynamiclib $C_UNIV_SWITCH -install_name libcfitsio.\${CFITSIO_SONAME}\${SHLIB_SUFFIX} -compatibility_version \${CFITSIO_SONAME} -current_version \${CFITSIO_SONAME}.\${CFITSIO_MAJOR}.\${CFITSIO_MINOR}" ;; esac changequote([,]) lhea_shlib_cflags="-fPIC -fno-common" ;; hpu) SHLIB_LD="ld -b" SHLIB_SUFFIX=".sl" ;; lnx) SHLIB_LD=":" CFITSIO_SHLIB="libcfitsio\${SHLIB_SUFFIX}.\${CFITSIO_SONAME}.\${CFITSIO_MAJOR}.\${CFITSIO_MINOR}" CFITSIO_SHLIB_SONAME="libcfitsio\${SHLIB_SUFFIX}.\${CFITSIO_SONAME}" ;; osf) SHLIB_LD="ld -shared -expect_unresolved '*'" LD_FLAGS="-taso" ;; sol) SHLIB_LD="/usr/ccs/bin/ld -G" lhea_shlib_cflags="-KPIC" ;; sgi) SHLIB_LD="ld -shared -rdata_shared" ;; *) AC_MSG_WARN(Unable to determine how to make a shared library) ;; esac # Darwin uses gcc (=cc), but needs different flags (see above) if test "x$EXT" != xdarwin && test "x$EXT" != xcygwin && test "x$EXT" != xmingw32; then if test "x$GCC" = xyes; then SHLIB_LD="$CC -shared -Wl,-soname,libcfitsio\${SHLIB_SUFFIX}.\${CFITSIO_SONAME}" lhea_shlib_cflags='-fPIC' fi fi if test "x$lhea_shlib_cflags" != x; then CFLAGS="$CFLAGS $lhea_shlib_cflags" fi # Set shared library name for cases in which we aren't setting a 'soname': if test "x$CFITSIO_SHLIB" = x; then CFITSIO_SHLIB="libcfitsio\${SHLIB_SUFFIX}"; fi AC_SUBST(ARCH)dnl AC_SUBST(CFLAGS)dnl AC_SUBST(CC)dnl AC_SUBST(FC)dnl AC_SUBST(LIBPRE)dnl AC_SUBST(SHLIB_LD)dnl AC_SUBST(SHLIB_SUFFIX)dnl AC_SUBST(CFITSIO_SHLIB)dnl AC_SUBST(CFITSIO_SHLIB_SONAME)dnl AC_SUBST(F77_WRAPPERS) # ================= test for the unix ftruncate function ================ AC_MSG_CHECKING("whether ftruncate works") AC_LINK_IFELSE([AC_LANG_PROGRAM([[#include ]], [[ ftruncate(0, 0); ]])],[ AC_DEFINE(HAVE_FTRUNCATE) AC_MSG_RESULT("yes") ],[AC_MSG_RESULT("no") ]) # --------------------------------------------------------- # some systems define long long for 64-bit ints # --------------------------------------------------------- AC_MSG_CHECKING("whether long long is defined") AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[#include ]], [[ long long filler; ]])],[ AC_DEFINE(HAVE_LONGLONG) AC_MSG_RESULT("yes") ],[AC_MSG_RESULT("no") ]) # ==================== SHARED MEMORY DRIVER SECTION ======================= # # 09-Mar-98 : modified by JB/ISDC # 3 checks added to support autoconfiguration of shared memory # driver. First generic check is made whether shared memory is supported # at all, then 2 more specific checks are made (architecture dependent). # Currently tested on : sparc-solaris, intel-linux, sgi-irix, dec-alpha-osf # ------------------------------------------------------------------------- # check is System V IPC is supported on this machine # ------------------------------------------------------------------------- AC_MSG_CHECKING("whether system V style IPC services are supported") AC_LINK_IFELSE([AC_LANG_PROGRAM([[#include #include #include ]], [[ shmat(0, 0, 0); shmdt(0); shmget(0, 0, 0); semget(0, 0, 0); ]])],[ AC_DEFINE(HAVE_SHMEM_SERVICES) my_shmem=\${SOURCES_SHMEM} AC_MSG_RESULT("yes") ],[AC_MSG_RESULT("no") ]) AC_SUBST(my_shmem) # ------------------------------------------------------------------------- # some systems define flock_t, for others we have to define it ourselves # ------------------------------------------------------------------------- AC_MSG_CHECKING("do we have flock_t defined in sys/fcntl.h") AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[#include ]], [[ flock_t filler; ]])],[ AC_DEFINE(HAVE_FLOCK_T) AC_MSG_RESULT("yes") ],[AC_MSG_RESULT("no") ]) if test "$HAVE_FLOCK_T" != 1; then AC_MSG_CHECKING("do we have flock_t defined in sys/flock.h") AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[#include ]], [[ flock_t filler; ]])],[ AC_DEFINE(HAVE_FLOCK_T) AC_MSG_RESULT("yes") ],[AC_MSG_RESULT("no") ]) fi # ------------------------------------------------------------------------- # there are some idiosyncrasies with semun defs (used in semxxx). Solaris # does not define it at all # ------------------------------------------------------------------------- AC_MSG_CHECKING("do we have union semun defined") AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[#include #include #include ]], [[ union semun filler; ]])],[ AC_DEFINE(HAVE_UNION_SEMUN) AC_MSG_RESULT("yes") ],[AC_MSG_RESULT("no") ]) # ==================== END OF SHARED MEMORY DRIVER SECTION ================ # ================= test for the unix networking functions ================ AC_SEARCH_LIBS([gethostbyname], [nsl], cfitsio_have_nsl=1, cfitsio_have_nsl=0) AC_SEARCH_LIBS([connect], [socket], cfitsio_have_socket=1, cfitsio_have_socket=0, [-lnsl]) if test "$cfitsio_have_nsl" = 1 -a "$cfitsio_have_socket" = 1; then AC_DEFINE(HAVE_NET_SERVICES) fi # ==================== END OF unix networking SECTION ================ # ------------------------------------------------------------------------------ # Define _REENTRANT & add -lpthread to LIBS if reentrant multithreading enabled: # ------------------------------------------------------------------------------ if test "x$BUILD_REENTRANT" = xyes; then AC_DEFINE(_REENTRANT) AC_CHECK_LIB([pthread],[main],[],[AC_MSG_ERROR(Unable to locate pthread library needed when enabling reentrant multithreading)]) fi # ------------------------------------------------------------------------------ AC_CONFIG_FILES([Makefile]) AC_OUTPUT AC_CONFIG_FILES([cfitsio.pc]) AC_OUTPUT AC_MSG_RESULT([]) AC_MSG_RESULT([ Congratulations, Makefile update was successful.]) AC_MSG_RESULT([ You may want to run \"make\" now.]) AC_MSG_RESULT([]) healpy-1.8.1/cfitsio/speed.c0000654000175000017530000003622712272000775016333 0ustar zoncaplanck00000000000000#include #include #include #include #include /* Every program which uses the CFITSIO interface must include the the fitsio.h header file. This contains the prototypes for all the routines and defines the error status values and other symbolic constants used in the interface. */ #include "fitsio.h" #define minvalue(A,B) ((A) < (B) ? (A) : (B)) /* size of the image */ #define XSIZE 3000 #define YSIZE 3000 /* size of data buffer */ #define SHTSIZE 20000 static long sarray[ SHTSIZE ] = {SHTSIZE * 0}; /* no. of rows in binary table */ #define BROWS 2500000 /* no. of rows in ASCII table */ #define AROWS 400000 /* CLOCKS_PER_SEC should be defined by most compilers */ #if defined(CLOCKS_PER_SEC) #define CLOCKTICKS CLOCKS_PER_SEC #else /* on SUN OS machine, CLOCKS_PER_SEC is not defined, so set its value */ #define CLOCKTICKS 1000000 #define difftime(A,B) ((double) A - (double) B) #endif /* define variables for measuring elapsed time */ clock_t scpu, ecpu; time_t start, finish; long startsec; /* start of elapsed time interval */ int startmilli; /* start of elapsed time interval */ int writeimage(fitsfile *fptr, int *status); int writebintable(fitsfile *fptr, int *status); int writeasctable(fitsfile *fptr, int *status); int readimage(fitsfile *fptr, int *status); int readatable(fitsfile *fptr, int *status); int readbtable(fitsfile *fptr, int *status); void printerror( int status); int marktime(int *status); int gettime(double *elapse, float *elapscpu, int *status); int main(void); int main() { /************************************************************************* This program tests the speed of writing/reading FITS files with cfitsio **************************************************************************/ FILE *diskfile; fitsfile *fptr; /* pointer to the FITS file, defined in fitsio.h */ int status, ii; long rawloop; char filename[] = "speedcc.fit"; /* name for new FITS file */ char buffer[2880] = {2880 * 0}; time_t tbegin, tend; float rate, size, elapcpu, cpufrac; double elapse; tbegin = time(0); remove(filename); /* Delete old file if it already exists */ diskfile = fopen(filename,"w+b"); rawloop = XSIZE * YSIZE / 720; printf(" "); printf(" SIZE / ELAPSE(%%CPU) = RATE\n"); printf("RAW fwrite (2880 bytes/loop)... "); marktime(&status); for (ii = 0; ii < rawloop; ii++) if (fwrite(buffer, 1, 2880, diskfile) != 2880) printf("write error \n"); gettime(&elapse, &elapcpu, &status); cpufrac = elapcpu / elapse * 100.; size = 2880. * rawloop / 1000000.; rate = size / elapse; printf(" %4.1fMB/%6.3fs(%3.0f) = %5.2fMB/s\n", size, elapse, cpufrac,rate); /* read back the binary records */ fseek(diskfile, 0, 0); printf("RAW fread (2880 bytes/loop)... "); marktime(&status); for (ii = 0; ii < rawloop; ii++) if (fread(buffer, 1, 2880, diskfile) != 2880) printf("read error \n"); gettime(&elapse, &elapcpu, &status); cpufrac = elapcpu / elapse * 100.; size = 2880. * rawloop / 1000000.; rate = size / elapse; printf(" %4.1fMB/%6.3fs(%3.0f) = %5.2fMB/s\n", size, elapse, cpufrac,rate); fclose(diskfile); remove(filename); status = 0; fptr = 0; if (fits_create_file(&fptr, filename, &status)) /* create new FITS file */ printerror( status); if (writeimage(fptr, &status)) printerror( status); if (writebintable(fptr, &status)) printerror( status); if (writeasctable(fptr, &status)) printerror( status); if (readimage(fptr, &status)) printerror( status); if (readbtable(fptr, &status)) printerror( status); if (readatable(fptr, &status)) printerror( status); if (fits_close_file(fptr, &status)) printerror( status ); tend = time(0); elapse = difftime(tend, tbegin) + 0.5; printf("Total elapsed time = %.3fs, status = %d\n",elapse, status); return(0); } /*--------------------------------------------------------------------------*/ int writeimage(fitsfile *fptr, int *status) /**************************************************/ /* write the primary array containing a 2-D image */ /**************************************************/ { long nremain, ii; float rate, size, elapcpu, cpufrac; double elapse; /* initialize FITS image parameters */ int bitpix = 32; /* 32-bit signed integer pixel values */ long naxis = 2; /* 2-dimensional image */ long naxes[2] = {XSIZE, YSIZE }; /* image size */ /* write the required keywords for the primary array image */ if ( fits_create_img(fptr, bitpix, naxis, naxes, status) ) printerror( *status ); printf("\nWrite %dx%d I*4 image, %d pixels/loop: ",XSIZE,YSIZE,SHTSIZE); marktime(status); nremain = XSIZE * YSIZE; for (ii = 1; ii <= nremain; ii += SHTSIZE) { ffpprj(fptr, 0, ii, SHTSIZE, sarray, status); } ffflus(fptr, status); /* flush all buffers to disk */ gettime(&elapse, &elapcpu, status); cpufrac = elapcpu / elapse * 100.; size = XSIZE * 4. * YSIZE / 1000000.; rate = size / elapse; printf(" %4.1fMB/%6.3fs(%3.0f) = %5.2fMB/s\n", size, elapse, cpufrac,rate); return( *status ); } /*--------------------------------------------------------------------------*/ int writebintable (fitsfile *fptr, int *status) /*********************************************************/ /* Create a binary table extension containing 3 columns */ /*********************************************************/ { int tfields = 2; long nremain, ntodo, firstrow = 1, firstelem = 1, nrows; float rate, size, elapcpu, cpufrac; double elapse; char extname[] = "Speed_Test"; /* extension name */ /* define the name, datatype, and physical units for the columns */ char *ttype[] = { "first", "second" }; char *tform[] = {"1J", "1J" }; char *tunit[] = { " ", " " }; /* append a new empty binary table onto the FITS file */ if ( fits_create_tbl( fptr, BINARY_TBL, BROWS, tfields, ttype, tform, tunit, extname, status) ) printerror( *status ); /* get table row size and optimum number of rows to write per loop */ fits_get_rowsize(fptr, &nrows, status); nrows = minvalue(nrows, SHTSIZE); nremain = BROWS; printf("Write %7drow x %dcol bintable %4ld rows/loop:", BROWS, tfields, nrows); marktime(status); while(nremain) { ntodo = minvalue(nrows, nremain); ffpclj(fptr, 1, firstrow, firstelem, ntodo, sarray, status); ffpclj(fptr, 2, firstrow, firstelem, ntodo, sarray, status); firstrow += ntodo; nremain -= ntodo; } ffflus(fptr, status); /* flush all buffers to disk */ gettime(&elapse, &elapcpu, status); cpufrac = elapcpu / elapse * 100.; size = BROWS * 8. / 1000000.; rate = size / elapse; printf(" %4.1fMB/%6.3fs(%3.0f) = %5.2fMB/s\n", size, elapse, cpufrac,rate); return( *status ); } /*--------------------------------------------------------------------------*/ int writeasctable (fitsfile *fptr, int *status) /*********************************************************/ /* Create an ASCII table extension containing 2 columns */ /*********************************************************/ { int tfields = 2; long nremain, ntodo, firstrow = 1, firstelem = 1; long nrows; float rate, size, elapcpu, cpufrac; double elapse; char extname[] = "Speed_Test"; /* extension name */ /* define the name, datatype, and physical units for the columns */ char *ttype[] = { "first", "second" }; char *tform[] = {"I6", "I6" }; char *tunit[] = { " ", " " }; /* append a new empty ASCII table onto the FITS file */ if ( fits_create_tbl( fptr, ASCII_TBL, AROWS, tfields, ttype, tform, tunit, extname, status) ) printerror( *status ); /* get table row size and optimum number of rows to write per loop */ fits_get_rowsize(fptr, &nrows, status); nrows = minvalue(nrows, SHTSIZE); nremain = AROWS; printf("Write %7drow x %dcol asctable %4ld rows/loop:", AROWS, tfields, nrows); marktime(status); while(nremain) { ntodo = minvalue(nrows, nremain); ffpclj(fptr, 1, firstrow, firstelem, ntodo, sarray, status); ffpclj(fptr, 2, firstrow, firstelem, ntodo, sarray, status); firstrow += ntodo; nremain -= ntodo; } ffflus(fptr, status); /* flush all buffers to disk */ gettime(&elapse, &elapcpu, status); cpufrac = elapcpu / elapse * 100.; size = AROWS * 13. / 1000000.; rate = size / elapse; printf(" %4.1fMB/%6.3fs(%3.0f) = %5.2fMB/s\n", size, elapse, cpufrac,rate); return( *status ); } /*--------------------------------------------------------------------------*/ int readimage( fitsfile *fptr, int *status ) /*********************/ /* Read a FITS image */ /*********************/ { int anynull, hdutype; long nremain, ii; long longnull = 0; float rate, size, elapcpu, cpufrac; double elapse; /* move to the primary array */ if ( fits_movabs_hdu(fptr, 1, &hdutype, status) ) printerror( *status ); printf("\nRead back image "); marktime(status); nremain = XSIZE * YSIZE; for (ii=1; ii <= nremain; ii += SHTSIZE) { ffgpvj(fptr, 0, ii, SHTSIZE, longnull, sarray, &anynull, status); } gettime(&elapse, &elapcpu, status); cpufrac = elapcpu / elapse * 100.; size = XSIZE * 4. * YSIZE / 1000000.; rate = size / elapse; printf(" %4.1fMB/%6.3fs(%3.0f) = %5.2fMB/s\n", size, elapse, cpufrac,rate); return( *status ); } /*--------------------------------------------------------------------------*/ int readbtable( fitsfile *fptr, int *status ) /************************************************************/ /* read and print data values from the binary table */ /************************************************************/ { int hdutype, anynull; long nremain, ntodo, firstrow = 1, firstelem = 1; long nrows; long lnull = 0; float rate, size, elapcpu, cpufrac; double elapse; /* move to the table */ if ( fits_movrel_hdu(fptr, 1, &hdutype, status) ) printerror( *status ); /* get table row size and optimum number of rows to read per loop */ fits_get_rowsize(fptr, &nrows, status); nrows = minvalue(nrows, SHTSIZE); /* read the columns */ nremain = BROWS; printf("Read back BINTABLE "); marktime(status); while(nremain) { ntodo = minvalue(nrows, nremain); ffgcvj(fptr, 1, firstrow, firstelem, ntodo, lnull, sarray, &anynull, status); ffgcvj(fptr, 2, firstrow, firstelem, ntodo, lnull, sarray, &anynull, status); firstrow += ntodo; nremain -= ntodo; } gettime(&elapse, &elapcpu, status); cpufrac = elapcpu / elapse * 100.; size = BROWS * 8. / 1000000.; rate = size / elapse; printf(" %4.1fMB/%6.3fs(%3.0f) = %5.2fMB/s\n", size, elapse, cpufrac,rate); return( *status ); } /*--------------------------------------------------------------------------*/ int readatable( fitsfile *fptr, int *status ) /************************************************************/ /* read and print data values from an ASCII or binary table */ /************************************************************/ { int hdutype, anynull; long nremain, ntodo, firstrow = 1, firstelem = 1; long nrows; long lnull = 0; float rate, size, elapcpu, cpufrac; double elapse; /* move to the table */ if ( fits_movrel_hdu(fptr, 1, &hdutype, status) ) printerror( *status ); /* get table row size and optimum number of rows to read per loop */ fits_get_rowsize(fptr, &nrows, status); nrows = minvalue(nrows, SHTSIZE); /* read the columns */ nremain = AROWS; printf("Read back ASCII Table "); marktime(status); while(nremain) { ntodo = minvalue(nrows, nremain); ffgcvj(fptr, 1, firstrow, firstelem, ntodo, lnull, sarray, &anynull, status); ffgcvj(fptr, 2, firstrow, firstelem, ntodo, lnull, sarray, &anynull, status); firstrow += ntodo; nremain -= ntodo; } gettime(&elapse, &elapcpu, status); cpufrac = elapcpu / elapse * 100.; size = AROWS * 13. / 1000000.; rate = size / elapse; printf(" %4.1fMB/%6.3fs(%3.0f) = %5.2fMB/s\n", size, elapse, cpufrac,rate); return( *status ); } /*--------------------------------------------------------------------------*/ void printerror( int status) { /*****************************************************/ /* Print out cfitsio error messages and exit program */ /*****************************************************/ char status_str[FLEN_STATUS], errmsg[FLEN_ERRMSG]; if (status) fprintf(stderr, "\n*** Error occurred during program execution ***\n"); fits_get_errstatus(status, status_str); /* get the error description */ fprintf(stderr, "\nstatus = %d: %s\n", status, status_str); /* get first message; null if stack is empty */ if ( fits_read_errmsg(errmsg) ) { fprintf(stderr, "\nError message stack:\n"); fprintf(stderr, " %s\n", errmsg); while ( fits_read_errmsg(errmsg) ) /* get remaining messages */ fprintf(stderr, " %s\n", errmsg); } exit( status ); /* terminate the program, returning error status */ } /*--------------------------------------------------------------------------*/ int marktime( int *status) { double telapse; time_t temp; struct timeval tv; struct timezone tz; temp = time(0); /* Since elapsed time is only measured to the nearest second */ /* keep getting the time until the seconds tick just changes. */ /* This provides more consistent timing measurements since the */ /* intervals all start on an integer seconds. */ telapse = 0.; scpu = clock(); start = time(0); /* while (telapse == 0.) { scpu = clock(); start = time(0); telapse = difftime( start, temp ); } */ gettimeofday (&tv, &tz); startsec = tv.tv_sec; startmilli = tv.tv_usec/1000; return( *status ); } /*--------------------------------------------------------------------------*/ int gettime(double *elapse, float *elapscpu, int *status) { struct timeval tv; struct timezone tz; int stopmilli; long stopsec; gettimeofday (&tv, &tz); ecpu = clock(); finish = time(0); stopmilli = tv.tv_usec/1000; stopsec = tv.tv_sec; *elapse = (stopsec - startsec) + (stopmilli - startmilli)/1000.; /* *elapse = difftime(finish, start) + 0.5; */ *elapscpu = (ecpu - scpu) * 1.0 / CLOCKTICKS; return( *status ); } healpy-1.8.1/cfitsio/fitscore.c0000654000175000017530000112222012272000775017037 0ustar zoncaplanck00000000000000/* This file, fitscore.c, contains the core set of FITSIO routines. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ /* Copyright (Unpublished--all rights reserved under the copyright laws of the United States), U.S. Government as represented by the Administrator of the National Aeronautics and Space Administration. No copyright is claimed in the United States under Title 17, U.S. Code. Permission to freely use, copy, modify, and distribute this software and its documentation without fee is hereby granted, provided that this copyright notice and disclaimer of warranty appears in all copies. DISCLAIMER: THE SOFTWARE IS PROVIDED 'AS IS' WITHOUT ANY WARRANTY OF ANY KIND, EITHER EXPRESSED, IMPLIED, OR STATUTORY, INCLUDING, BUT NOT LIMITED TO, ANY WARRANTY THAT THE SOFTWARE WILL CONFORM TO SPECIFICATIONS, ANY IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND FREEDOM FROM INFRINGEMENT, AND ANY WARRANTY THAT THE DOCUMENTATION WILL CONFORM TO THE SOFTWARE, OR ANY WARRANTY THAT THE SOFTWARE WILL BE ERROR FREE. IN NO EVENT SHALL NASA BE LIABLE FOR ANY DAMAGES, INCLUDING, BUT NOT LIMITED TO, DIRECT, INDIRECT, SPECIAL OR CONSEQUENTIAL DAMAGES, ARISING OUT OF, RESULTING FROM, OR IN ANY WAY CONNECTED WITH THIS SOFTWARE, WHETHER OR NOT BASED UPON WARRANTY, CONTRACT, TORT , OR OTHERWISE, WHETHER OR NOT INJURY WAS SUSTAINED BY PERSONS OR PROPERTY OR OTHERWISE, AND WHETHER OR NOT LOSS WAS SUSTAINED FROM, OR AROSE OUT OF THE RESULTS OF, OR USE OF, THE SOFTWARE OR SERVICES PROVIDED HEREUNDER." */ #include #include #include #include #include #include /* stddef.h is apparently needed to define size_t with some compilers ?? */ #include #include #include "fitsio2.h" #define errmsgsiz 25 #define ESMARKER 27 /* Escape character is used as error stack marker */ #define DelAll 1 /* delete all messages on the error stack */ #define DelMark 2 /* delete newest messages back to and including marker */ #define DelNewest 3 /* delete the newest message from the stack */ #define GetMesg 4 /* pop and return oldest message, ignoring marks */ #define PutMesg 5 /* add a new message to the stack */ #define PutMark 6 /* add a marker to the stack */ #ifdef _REENTRANT /* Fitsio_Lock and Fitsio_Pthread_Status are declared in fitsio2.h. */ pthread_mutex_t Fitsio_Lock; int Fitsio_Pthread_Status = 0; #endif int STREAM_DRIVER = 0; struct lconv *lcxxx; /*--------------------------------------------------------------------------*/ float ffvers(float *version) /* IO - version number */ /* return the current version number of the FITSIO software */ { *version = (float) 3.36; /* 6 Dec 2013 Previous releases: *version = 3.35 23 May 2013 *version = 3.34 20 Mar 2013 *version = 3.33 14 Feb 2013 *version = 3.32 Oct 2012 *version = 3.31 18 Jul 2012 *version = 3.30 11 Apr 2012 *version = 3.29 22 Sep 2011 *version = 3.28 12 May 2011 *version = 3.27 3 Mar 2011 *version = 3.26 30 Dec 2010 *version = 3.25 9 June 2010 *version = 3.24 26 Jan 2010 *version = 3.23 7 Jan 2010 *version = 3.22 28 Oct 2009 *version = 3.21 24 Sep 2009 *version = 3.20 31 Aug 2009 *version = 3.18 12 May 2009 (beta version) *version = 3.14 18 Mar 2009 *version = 3.13 5 Jan 2009 *version = 3.12 8 Oct 2008 *version = 3.11 19 Sep 2008 *version = 3.10 20 Aug 2008 *version = 3.09 3 Jun 2008 *version = 3.08 15 Apr 2007 (internal release) *version = 3.07 5 Nov 2007 (internal release) *version = 3.06 27 Aug 2007 *version = 3.05 12 Jul 2007 (internal release) *version = 3.03 11 Dec 2006 *version = 3.02 18 Sep 2006 *version = 3.01 May 2006 included in FTOOLS 6.1 release *version = 3.006 20 Feb 2006 *version = 3.005 20 Dec 2005 (beta, in heasoft swift release *version = 3.004 16 Sep 2005 (beta, in heasoft swift release *version = 3.003 28 Jul 2005 (beta, in heasoft swift release *version = 3.002 15 Apr 2005 (beta) *version = 3.001 15 Mar 2005 (beta) released with heasoft 6.0 *version = 3.000 1 Mar 2005 (internal release only) *version = 2.51 2 Dec 2004 *version = 2.50 28 Jul 2004 *version = 2.49 11 Feb 2004 *version = 2.48 28 Jan 2004 *version = 2.470 18 Aug 2003 *version = 2.460 20 May 2003 *version = 2.450 30 Apr 2003 (internal release only) *version = 2.440 8 Jan 2003 *version = 2.430; 4 Nov 2002 *version = 2.420; 19 Jul 2002 *version = 2.410; 22 Apr 2002 used in ftools v5.2 *version = 2.401; 28 Jan 2002 *version = 2.400; 18 Jan 2002 *version = 2.301; 7 Dec 2001 *version = 2.300; 23 Oct 2001 *version = 2.204; 26 Jul 2001 *version = 2.203; 19 Jul 2001 used in ftools v5.1 *version = 2.202; 22 May 2001 *version = 2.201; 15 Mar 2001 *version = 2.200; 26 Jan 2001 *version = 2.100; 26 Sep 2000 *version = 2.037; 6 Jul 2000 *version = 2.036; 1 Feb 2000 *version = 2.035; 7 Dec 1999 (internal release only) *version = 2.034; 23 Nov 1999 *version = 2.033; 17 Sep 1999 *version = 2.032; 25 May 1999 *version = 2.031; 31 Mar 1999 *version = 2.030; 24 Feb 1999 *version = 2.029; 11 Feb 1999 *version = 2.028; 26 Jan 1999 *version = 2.027; 12 Jan 1999 *version = 2.026; 23 Dec 1998 *version = 2.025; 1 Dec 1998 *version = 2.024; 9 Nov 1998 *version = 2.023; 1 Nov 1998 first full release of V2.0 *version = 1.42; 30 Apr 1998 *version = 1.40; 6 Feb 1998 *version = 1.33; 16 Dec 1997 (internal release only) *version = 1.32; 21 Nov 1997 (internal release only) *version = 1.31; 4 Nov 1997 (internal release only) *version = 1.30; 11 Sep 1997 *version = 1.27; 3 Sep 1997 (internal release only) *version = 1.25; 2 Jul 1997 *version = 1.24; 2 May 1997 *version = 1.23; 24 Apr 1997 *version = 1.22; 18 Apr 1997 *version = 1.21; 26 Mar 1997 *version = 1.2; 29 Jan 1997 *version = 1.11; 04 Dec 1996 *version = 1.101; 13 Nov 1996 *version = 1.1; 6 Nov 1996 *version = 1.04; 17 Sep 1996 *version = 1.03; 20 Aug 1996 *version = 1.02; 15 Aug 1996 *version = 1.01; 12 Aug 1996 */ return(*version); } /*--------------------------------------------------------------------------*/ int ffflnm(fitsfile *fptr, /* I - FITS file pointer */ char *filename, /* O - name of the file */ int *status) /* IO - error status */ /* return the name of the FITS file */ { strcpy(filename,(fptr->Fptr)->filename); return(*status); } /*--------------------------------------------------------------------------*/ int ffflmd(fitsfile *fptr, /* I - FITS file pointer */ int *filemode, /* O - open mode of the file */ int *status) /* IO - error status */ /* return the access mode of the FITS file */ { *filemode = (fptr->Fptr)->writemode; return(*status); } /*--------------------------------------------------------------------------*/ void ffgerr(int status, /* I - error status value */ char *errtext) /* O - error message (max 30 char long + null) */ /* Return a short descriptive error message that corresponds to the input error status value. The message may be up to 30 characters long, plus the terminating null character. */ { errtext[0] = '\0'; if (status >= 0 && status < 300) { switch (status) { case 0: strcpy(errtext, "OK - no error"); break; case 1: strcpy(errtext, "non-CFITSIO program error"); break; case 101: strcpy(errtext, "same input and output files"); break; case 103: strcpy(errtext, "attempt to open too many files"); break; case 104: strcpy(errtext, "could not open the named file"); break; case 105: strcpy(errtext, "couldn't create the named file"); break; case 106: strcpy(errtext, "error writing to FITS file"); break; case 107: strcpy(errtext, "tried to move past end of file"); break; case 108: strcpy(errtext, "error reading from FITS file"); break; case 110: strcpy(errtext, "could not close the file"); break; case 111: strcpy(errtext, "array dimensions too big"); break; case 112: strcpy(errtext, "cannot write to readonly file"); break; case 113: strcpy(errtext, "could not allocate memory"); break; case 114: strcpy(errtext, "invalid fitsfile pointer"); break; case 115: strcpy(errtext, "NULL input pointer"); break; case 116: strcpy(errtext, "error seeking file position"); break; case 121: strcpy(errtext, "invalid URL prefix"); break; case 122: strcpy(errtext, "too many I/O drivers"); break; case 123: strcpy(errtext, "I/O driver init failed"); break; case 124: strcpy(errtext, "no I/O driver for this URLtype"); break; case 125: strcpy(errtext, "parse error in input file URL"); break; case 126: strcpy(errtext, "parse error in range list"); break; case 151: strcpy(errtext, "bad argument (shared mem drvr)"); break; case 152: strcpy(errtext, "null ptr arg (shared mem drvr)"); break; case 153: strcpy(errtext, "no free shared memory handles"); break; case 154: strcpy(errtext, "share mem drvr not initialized"); break; case 155: strcpy(errtext, "IPC system error (shared mem)"); break; case 156: strcpy(errtext, "no memory (shared mem drvr)"); break; case 157: strcpy(errtext, "share mem resource deadlock"); break; case 158: strcpy(errtext, "lock file open/create failed"); break; case 159: strcpy(errtext, "can't resize share mem block"); break; case 201: strcpy(errtext, "header already has keywords"); break; case 202: strcpy(errtext, "keyword not found in header"); break; case 203: strcpy(errtext, "keyword number out of bounds"); break; case 204: strcpy(errtext, "keyword value is undefined"); break; case 205: strcpy(errtext, "string missing closing quote"); break; case 206: strcpy(errtext, "error in indexed keyword name"); break; case 207: strcpy(errtext, "illegal character in keyword"); break; case 208: strcpy(errtext, "required keywords out of order"); break; case 209: strcpy(errtext, "keyword value not positive int"); break; case 210: strcpy(errtext, "END keyword not found"); break; case 211: strcpy(errtext, "illegal BITPIX keyword value"); break; case 212: strcpy(errtext, "illegal NAXIS keyword value"); break; case 213: strcpy(errtext, "illegal NAXISn keyword value"); break; case 214: strcpy(errtext, "illegal PCOUNT keyword value"); break; case 215: strcpy(errtext, "illegal GCOUNT keyword value"); break; case 216: strcpy(errtext, "illegal TFIELDS keyword value"); break; case 217: strcpy(errtext, "negative table row size"); break; case 218: strcpy(errtext, "negative number of rows"); break; case 219: strcpy(errtext, "named column not found"); break; case 220: strcpy(errtext, "illegal SIMPLE keyword value"); break; case 221: strcpy(errtext, "first keyword not SIMPLE"); break; case 222: strcpy(errtext, "second keyword not BITPIX"); break; case 223: strcpy(errtext, "third keyword not NAXIS"); break; case 224: strcpy(errtext, "missing NAXISn keywords"); break; case 225: strcpy(errtext, "first keyword not XTENSION"); break; case 226: strcpy(errtext, "CHDU not an ASCII table"); break; case 227: strcpy(errtext, "CHDU not a binary table"); break; case 228: strcpy(errtext, "PCOUNT keyword not found"); break; case 229: strcpy(errtext, "GCOUNT keyword not found"); break; case 230: strcpy(errtext, "TFIELDS keyword not found"); break; case 231: strcpy(errtext, "missing TBCOLn keyword"); break; case 232: strcpy(errtext, "missing TFORMn keyword"); break; case 233: strcpy(errtext, "CHDU not an IMAGE extension"); break; case 234: strcpy(errtext, "illegal TBCOLn keyword value"); break; case 235: strcpy(errtext, "CHDU not a table extension"); break; case 236: strcpy(errtext, "column exceeds width of table"); break; case 237: strcpy(errtext, "more than 1 matching col. name"); break; case 241: strcpy(errtext, "row width not = field widths"); break; case 251: strcpy(errtext, "unknown FITS extension type"); break; case 252: strcpy(errtext, "1st key not SIMPLE or XTENSION"); break; case 253: strcpy(errtext, "END keyword is not blank"); break; case 254: strcpy(errtext, "Header fill area not blank"); break; case 255: strcpy(errtext, "Data fill area invalid"); break; case 261: strcpy(errtext, "illegal TFORM format code"); break; case 262: strcpy(errtext, "unknown TFORM datatype code"); break; case 263: strcpy(errtext, "illegal TDIMn keyword value"); break; case 264: strcpy(errtext, "invalid BINTABLE heap pointer"); break; default: strcpy(errtext, "unknown error status"); break; } } else if (status < 600) { switch(status) { case 301: strcpy(errtext, "illegal HDU number"); break; case 302: strcpy(errtext, "column number < 1 or > tfields"); break; case 304: strcpy(errtext, "negative byte address"); break; case 306: strcpy(errtext, "negative number of elements"); break; case 307: strcpy(errtext, "bad first row number"); break; case 308: strcpy(errtext, "bad first element number"); break; case 309: strcpy(errtext, "not an ASCII (A) column"); break; case 310: strcpy(errtext, "not a logical (L) column"); break; case 311: strcpy(errtext, "bad ASCII table datatype"); break; case 312: strcpy(errtext, "bad binary table datatype"); break; case 314: strcpy(errtext, "null value not defined"); break; case 317: strcpy(errtext, "not a variable length column"); break; case 320: strcpy(errtext, "illegal number of dimensions"); break; case 321: strcpy(errtext, "1st pixel no. > last pixel no."); break; case 322: strcpy(errtext, "BSCALE or TSCALn = 0."); break; case 323: strcpy(errtext, "illegal axis length < 1"); break; case 340: strcpy(errtext, "not group table"); break; case 341: strcpy(errtext, "HDU already member of group"); break; case 342: strcpy(errtext, "group member not found"); break; case 343: strcpy(errtext, "group not found"); break; case 344: strcpy(errtext, "bad group id"); break; case 345: strcpy(errtext, "too many HDUs tracked"); break; case 346: strcpy(errtext, "HDU alread tracked"); break; case 347: strcpy(errtext, "bad Grouping option"); break; case 348: strcpy(errtext, "identical pointers (groups)"); break; case 360: strcpy(errtext, "malloc failed in parser"); break; case 361: strcpy(errtext, "file read error in parser"); break; case 362: strcpy(errtext, "null pointer arg (parser)"); break; case 363: strcpy(errtext, "empty line (parser)"); break; case 364: strcpy(errtext, "cannot unread > 1 line"); break; case 365: strcpy(errtext, "parser too deeply nested"); break; case 366: strcpy(errtext, "file open failed (parser)"); break; case 367: strcpy(errtext, "hit EOF (parser)"); break; case 368: strcpy(errtext, "bad argument (parser)"); break; case 369: strcpy(errtext, "unexpected token (parser)"); break; case 401: strcpy(errtext, "bad int to string conversion"); break; case 402: strcpy(errtext, "bad float to string conversion"); break; case 403: strcpy(errtext, "keyword value not integer"); break; case 404: strcpy(errtext, "keyword value not logical"); break; case 405: strcpy(errtext, "keyword value not floating pt"); break; case 406: strcpy(errtext, "keyword value not double"); break; case 407: strcpy(errtext, "bad string to int conversion"); break; case 408: strcpy(errtext, "bad string to float conversion"); break; case 409: strcpy(errtext, "bad string to double convert"); break; case 410: strcpy(errtext, "illegal datatype code value"); break; case 411: strcpy(errtext, "illegal no. of decimals"); break; case 412: strcpy(errtext, "datatype conversion overflow"); break; case 413: strcpy(errtext, "error compressing image"); break; case 414: strcpy(errtext, "error uncompressing image"); break; case 420: strcpy(errtext, "bad date or time conversion"); break; case 431: strcpy(errtext, "syntax error in expression"); break; case 432: strcpy(errtext, "expression result wrong type"); break; case 433: strcpy(errtext, "vector result too large"); break; case 434: strcpy(errtext, "missing output column"); break; case 435: strcpy(errtext, "bad data in parsed column"); break; case 436: strcpy(errtext, "output extension of wrong type"); break; case 501: strcpy(errtext, "WCS angle too large"); break; case 502: strcpy(errtext, "bad WCS coordinate"); break; case 503: strcpy(errtext, "error in WCS calculation"); break; case 504: strcpy(errtext, "bad WCS projection type"); break; case 505: strcpy(errtext, "WCS keywords not found"); break; default: strcpy(errtext, "unknown error status"); break; } } else { strcpy(errtext, "unknown error status"); } return; } /*--------------------------------------------------------------------------*/ void ffpmsg(const char *err_message) /* put message on to error stack */ { ffxmsg(PutMesg, (char *)err_message); return; } /*--------------------------------------------------------------------------*/ void ffpmrk(void) /* write a marker to the stack. It is then possible to pop only those messages following the marker off of the stack, leaving the previous messages unaffected. The marker is ignored by the ffgmsg routine. */ { char *dummy = 0; ffxmsg(PutMark, dummy); return; } /*--------------------------------------------------------------------------*/ int ffgmsg(char *err_message) /* get oldest message from error stack, ignoring markers */ { ffxmsg(GetMesg, err_message); return(*err_message); } /*--------------------------------------------------------------------------*/ void ffcmsg(void) /* erase all messages in the error stack */ { char *dummy = 0; ffxmsg(DelAll, dummy); return; } /*--------------------------------------------------------------------------*/ void ffcmrk(void) /* erase newest messages in the error stack, stopping if a marker is found. The marker is also erased in this case. */ { char *dummy = 0; ffxmsg(DelMark, dummy); return; } /*--------------------------------------------------------------------------*/ void ffxmsg( int action, char *errmsg) /* general routine to get, put, or clear the error message stack. Use a static array rather than allocating memory as needed for the error messages because it is likely to be more efficient and simpler to implement. Action Code: DelAll 1 delete all messages on the error stack DelMark 2 delete messages back to and including the 1st marker DelNewest 3 delete the newest message from the stack GetMesg 4 pop and return oldest message, ignoring marks PutMesg 5 add a new message to the stack PutMark 6 add a marker to the stack */ { int ii; char markflag; static char *txtbuff[errmsgsiz], *tmpbuff, *msgptr; static char errbuff[errmsgsiz][81]; /* initialize all = \0 */ static int nummsg = 0; FFLOCK; if (action == DelAll) /* clear the whole message stack */ { for (ii = 0; ii < nummsg; ii ++) *txtbuff[ii] = '\0'; nummsg = 0; } else if (action == DelMark) /* clear up to and including first marker */ { while (nummsg > 0) { nummsg--; markflag = *txtbuff[nummsg]; /* store possible marker character */ *txtbuff[nummsg] = '\0'; /* clear the buffer for this msg */ if (markflag == ESMARKER) break; /* found a marker, so quit */ } } else if (action == DelNewest) /* remove newest message from stack */ { if (nummsg > 0) { nummsg--; *txtbuff[nummsg] = '\0'; /* clear the buffer for this msg */ } } else if (action == GetMesg) /* pop and return oldest message from stack */ { /* ignoring markers */ while (nummsg > 0) { strcpy(errmsg, txtbuff[0]); /* copy oldest message to output */ *txtbuff[0] = '\0'; /* clear the buffer for this msg */ nummsg--; for (ii = 0; ii < nummsg; ii++) txtbuff[ii] = txtbuff[ii + 1]; /* shift remaining pointers */ if (errmsg[0] != ESMARKER) { /* quit if this is not a marker */ FFUNLOCK; return; } } errmsg[0] = '\0'; /* no messages in the stack */ } else if (action == PutMesg) /* add new message to stack */ { msgptr = errmsg; while (strlen(msgptr)) { if (nummsg == errmsgsiz) { tmpbuff = txtbuff[0]; /* buffers full; reuse oldest buffer */ *txtbuff[0] = '\0'; /* clear the buffer for this msg */ nummsg--; for (ii = 0; ii < nummsg; ii++) txtbuff[ii] = txtbuff[ii + 1]; /* shift remaining pointers */ txtbuff[nummsg] = tmpbuff; /* set pointer for the new message */ } else { for (ii = 0; ii < errmsgsiz; ii++) { if (*errbuff[ii] == '\0') /* find first empty buffer */ { txtbuff[nummsg] = errbuff[ii]; break; } } } strncat(txtbuff[nummsg], msgptr, 80); nummsg++; msgptr += minvalue(80, strlen(msgptr)); } } else if (action == PutMark) /* put a marker on the stack */ { if (nummsg == errmsgsiz) { tmpbuff = txtbuff[0]; /* buffers full; reuse oldest buffer */ *txtbuff[0] = '\0'; /* clear the buffer for this msg */ nummsg--; for (ii = 0; ii < nummsg; ii++) txtbuff[ii] = txtbuff[ii + 1]; /* shift remaining pointers */ txtbuff[nummsg] = tmpbuff; /* set pointer for the new message */ } else { for (ii = 0; ii < errmsgsiz; ii++) { if (*errbuff[ii] == '\0') /* find first empty buffer */ { txtbuff[nummsg] = errbuff[ii]; break; } } } *txtbuff[nummsg] = ESMARKER; /* write the marker */ *(txtbuff[nummsg] + 1) = '\0'; nummsg++; } FFUNLOCK; return; } /*--------------------------------------------------------------------------*/ int ffpxsz(int datatype) /* return the number of bytes per pixel associated with the datatype */ { if (datatype == TBYTE) return(sizeof(char)); else if (datatype == TUSHORT) return(sizeof(short)); else if (datatype == TSHORT) return(sizeof(short)); else if (datatype == TULONG) return(sizeof(long)); else if (datatype == TLONG) return(sizeof(long)); else if (datatype == TINT) return(sizeof(int)); else if (datatype == TUINT) return(sizeof(int)); else if (datatype == TFLOAT) return(sizeof(float)); else if (datatype == TDOUBLE) return(sizeof(double)); else if (datatype == TLOGICAL) return(sizeof(char)); else return(0); } /*--------------------------------------------------------------------------*/ int fftkey(const char *keyword, /* I - keyword name */ int *status) /* IO - error status */ /* Test that the keyword name conforms to the FITS standard. Must contain only capital letters, digits, minus or underscore chars. Trailing spaces are allowed. If the input status value is less than zero, then the test is modified so that upper or lower case letters are allowed, and no error messages are printed if the keyword is not legal. */ { size_t maxchr, ii; int spaces=0; char msg[81], testchar; if (*status > 0) /* inherit input status value if > 0 */ return(*status); maxchr=strlen(keyword); if (maxchr > 8) maxchr = 8; for (ii = 0; ii < maxchr; ii++) { if (*status == 0) testchar = keyword[ii]; else testchar = toupper(keyword[ii]); if ( (testchar >= 'A' && testchar <= 'Z') || (testchar >= '0' && testchar <= '9') || testchar == '-' || testchar == '_' ) { if (spaces) { if (*status == 0) { /* don't print error message if status < 0 */ sprintf(msg, "Keyword name contains embedded space(s): %.8s", keyword); ffpmsg(msg); } return(*status = BAD_KEYCHAR); } } else if (keyword[ii] == ' ') spaces = 1; else { if (*status == 0) { /* don't print error message if status < 0 */ sprintf(msg, "Character %d in this keyword is illegal: %.8s", (int) (ii+1), keyword); ffpmsg(msg); /* explicitly flag the 2 most common cases */ if (keyword[ii] == 0) ffpmsg(" (This a NULL (0) character)."); else if (keyword[ii] == 9) ffpmsg(" (This an ASCII TAB (9) character)."); } return(*status = BAD_KEYCHAR); } } return(*status); } /*--------------------------------------------------------------------------*/ int fftrec(char *card, /* I - keyword card to test */ int *status) /* IO - error status */ /* Test that the keyword card conforms to the FITS standard. Must contain only printable ASCII characters; */ { size_t ii, maxchr; char msg[81]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); maxchr = strlen(card); for (ii = 8; ii < maxchr; ii++) { if (card[ii] < 32 || card[ii] > 126) { sprintf(msg, "Character %d in this keyword is illegal. Hex Value = %X", (int) (ii+1), (int) card[ii] ); if (card[ii] == 0) strcat(msg, " (NULL char.)"); else if (card[ii] == 9) strcat(msg, " (TAB char.)"); else if (card[ii] == 10) strcat(msg, " (Line Feed char.)"); else if (card[ii] == 11) strcat(msg, " (Vertical Tab)"); else if (card[ii] == 12) strcat(msg, " (Form Feed char.)"); else if (card[ii] == 13) strcat(msg, " (Carriage Return)"); else if (card[ii] == 27) strcat(msg, " (Escape char.)"); else if (card[ii] == 127) strcat(msg, " (Delete char.)"); ffpmsg(msg); strncpy(msg, card, 80); msg[80] = '\0'; ffpmsg(msg); return(*status = BAD_KEYCHAR); } } return(*status); } /*--------------------------------------------------------------------------*/ void ffupch(char *string) /* convert string to upper case, in place. */ { size_t len, ii; len = strlen(string); for (ii = 0; ii < len; ii++) string[ii] = toupper(string[ii]); return; } /*--------------------------------------------------------------------------*/ int ffmkky(const char *keyname, /* I - keyword name */ char *value, /* I - keyword value */ const char *comm, /* I - keyword comment */ char *card, /* O - constructed keyword card */ int *status) /* IO - status value */ /* Make a complete FITS 80-byte keyword card from the input name, value and comment strings. Output card is null terminated without any trailing blanks. */ { size_t namelen, len, ii; char tmpname[FLEN_KEYWORD], *cptr; int tstatus = -1, nblank = 0; if (*status > 0) return(*status); *tmpname = '\0'; *card = '\0'; while(*(keyname + nblank) == ' ') /* skip leading blanks in the name */ nblank++; strncat(tmpname, keyname + nblank, FLEN_KEYWORD - 1); len = strlen(value); namelen = strlen(tmpname); if (namelen) { cptr = tmpname + namelen - 1; while(*cptr == ' ') /* skip trailing blanks */ { *cptr = '\0'; cptr--; } namelen = cptr - tmpname + 1; } if (namelen <= 8 && (fftkey(keyname, &tstatus) <= 0) ) { /* a normal FITS keyword */ strcat(card, tmpname); /* copy keyword name to buffer */ for (ii = namelen; ii < 8; ii++) card[ii] = ' '; /* pad keyword name with spaces */ card[8] = '='; /* append '= ' in columns 9-10 */ card[9] = ' '; card[10] = '\0'; /* terminate the partial string */ namelen = 10; } else { /* use the ESO HIERARCH convention for longer keyword names */ /* check that the name does not contain an '=' (equals sign) */ if (strchr(tmpname, '=') ) { ffpmsg("Illegal keyword name; contains an equals sign (=)"); ffpmsg(tmpname); return(*status = BAD_KEYCHAR); } /* Don't repeat HIERARCH if the keyword already contains it */ if (FSTRNCMP(tmpname, "HIERARCH ", 9) && FSTRNCMP(tmpname, "hierarch ", 9)) strcat(card, "HIERARCH "); else namelen -= 9; /* deleted the string 'HIERARCH ' */ strcat(card, tmpname); if (namelen + 12 + len > 80) { /* save 1 char by not putting a space before the equals sign */ strcat(card, "= "); namelen += 11; } else { strcat(card, " = "); namelen += 12; } } if (len > 0) { if (value[0] == '\'') /* is this a quoted string value? */ { if (namelen > 77) { ffpmsg( "The following keyword + value is too long to fit on a card:"); ffpmsg(keyname); ffpmsg(value); return(*status = BAD_KEYCHAR); } strncat(card, value, 80 - namelen); /* append the value string */ len = minvalue(80, namelen + len); /* restore the closing quote if it got truncated */ if (len == 80) { card[79] = '\''; } if (comm) { if (comm[0] != 0) { if (len < 30) { for (ii = len; ii < 30; ii++) card[ii] = ' '; /* fill with spaces to col 30 */ card[30] = '\0'; len = 30; } } } } else { if (namelen + len > 80) { ffpmsg( "The following keyword + value is too long to fit on a card:"); ffpmsg(keyname); ffpmsg(value); return(*status = BAD_KEYCHAR); } else if (namelen + len < 30) { /* add spaces so field ends at least in col 30 */ strncat(card, " ", 30 - (namelen + len)); } strncat(card, value, 80 - namelen); /* append the value string */ len = minvalue(80, namelen + len); len = maxvalue(30, len); } if (comm) { if ((len < 77) && ( strlen(comm) > 0) ) /* room for a comment? */ { strcat(card, " / "); /* append comment separator */ strncat(card, comm, 77 - len); /* append comment (what fits) */ } } } else { if (namelen == 10) /* This case applies to normal keywords only */ { card[8] = ' '; /* keywords with no value have no '=' */ if (comm) { strncat(card, comm, 80 - namelen); /* append comment (what fits) */ } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffmkey(fitsfile *fptr, /* I - FITS file pointer */ const char *card, /* I - card string value */ int *status) /* IO - error status */ /* replace the previously read card (i.e. starting 80 bytes before the (fptr->Fptr)->nextkey position) with the contents of the input card. */ { char tcard[81]; size_t len, ii; /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); strncpy(tcard,card,80); tcard[80] = '\0'; len = strlen(tcard); /* silently replace any illegal characters with a space */ for (ii=0; ii < len; ii++) if (tcard[ii] < ' ' || tcard[ii] > 126) tcard[ii] = ' '; for (ii=len; ii < 80; ii++) /* fill card with spaces if necessary */ tcard[ii] = ' '; for (ii=0; ii < 8; ii++) /* make sure keyword name is uppercase */ tcard[ii] = toupper(tcard[ii]); fftkey(tcard, status); /* test keyword name contains legal chars */ /* no need to do this any more, since any illegal characters have been removed fftrec(tcard, status); */ /* test rest of keyword for legal chars */ /* move position of keyword to be over written */ ffmbyt(fptr, ((fptr->Fptr)->nextkey) - 80, REPORT_EOF, status); ffpbyt(fptr, 80, tcard, status); /* write the 80 byte card */ return(*status); } /*--------------------------------------------------------------------------*/ int ffkeyn(const char *keyroot, /* I - root string for keyword name */ int value, /* I - index number to be appended to root name */ char *keyname, /* O - output root + index keyword name */ int *status) /* IO - error status */ /* Construct a keyword name string by appending the index number to the root. e.g., if root = "TTYPE" and value = 12 then keyname = "TTYPE12". */ { char suffix[16]; size_t rootlen; keyname[0] = '\0'; /* initialize output name to null */ rootlen = strlen(keyroot); if (rootlen == 0 || rootlen > 7 || value < 0 ) return(*status = 206); sprintf(suffix, "%d", value); /* construct keyword suffix */ if ( strlen(suffix) + rootlen > 8) return(*status = 206); strcpy(keyname, keyroot); /* copy root string to name string */ strcat(keyname, suffix); /* append suffix to the root */ return(*status); } /*--------------------------------------------------------------------------*/ int ffnkey(int value, /* I - index number to be appended to root name */ const char *keyroot, /* I - root string for keyword name */ char *keyname, /* O - output root + index keyword name */ int *status) /* IO - error status */ /* Construct a keyword name string by appending the root string to the index number. e.g., if root = "TTYPE" and value = 12 then keyname = "12TTYPE". */ { size_t rootlen; keyname[0] = '\0'; /* initialize output name to null */ rootlen = strlen(keyroot); if (rootlen == 0 || rootlen > 7 || value < 0 ) return(*status = 206); sprintf(keyname, "%d", value); /* construct keyword prefix */ if (rootlen + strlen(keyname) > 8) return(*status = 206); strcat(keyname, keyroot); /* append root to the prefix */ return(*status); } /*--------------------------------------------------------------------------*/ int ffpsvc(char *card, /* I - FITS header card (nominally 80 bytes long) */ char *value, /* O - value string parsed from the card */ char *comm, /* O - comment string parsed from the card */ int *status) /* IO - error status */ /* ParSe the Value and Comment strings from the input header card string. If the card contains a quoted string value, the returned value string includes the enclosing quote characters. If comm = NULL, don't return the comment string. */ { int jj; size_t ii, cardlen, nblank, valpos; if (*status > 0) return(*status); value[0] = '\0'; if (comm) comm[0] = '\0'; cardlen = strlen(card); /* support for ESO HIERARCH keywords; find the '=' */ if (FSTRNCMP(card, "HIERARCH ", 9) == 0) { valpos = strcspn(card, "="); if (valpos == cardlen) /* no value indicator ??? */ { if (comm != NULL) { if (cardlen > 8) { strcpy(comm, &card[8]); jj=cardlen - 8; for (jj--; jj >= 0; jj--) /* replace trailing blanks with nulls */ { if (comm[jj] == ' ') comm[jj] = '\0'; else break; } } } return(*status); /* no value indicator */ } valpos++; /* point to the position after the '=' */ } else if (cardlen < 9 || FSTRNCMP(card, "COMMENT ", 8) == 0 || /* keywords with no value */ FSTRNCMP(card, "HISTORY ", 8) == 0 || FSTRNCMP(card, "END ", 8) == 0 || FSTRNCMP(card, " ", 8) == 0 || FSTRNCMP(&card[8], "= ", 2) != 0 ) /* no '= ' in cols 9-10 */ { /* no value, so the comment extends from cols 9 - 80 */ if (comm != NULL) { if (cardlen > 8) { strcpy(comm, &card[8]); jj=cardlen - 8; for (jj--; jj >= 0; jj--) /* replace trailing blanks with nulls */ { if (comm[jj] == ' ') comm[jj] = '\0'; else break; } } } return(*status); } else { valpos = 10; /* starting position of the value field */ } nblank = strspn(&card[valpos], " "); /* find number of leading blanks */ if (nblank + valpos == cardlen) { /* the absence of a value string is legal, and simply indicates that the keyword value is undefined. Don't write an error message in this case. */ return(*status); } ii = valpos + nblank; if (card[ii] == '/' ) /* slash indicates start of the comment */ { ii++; } else if (card[ii] == '\'' ) /* is this a quoted string value? */ { value[0] = card[ii]; for (jj=1, ii++; ii < cardlen; ii++, jj++) { if (card[ii] == '\'') /* is this the closing quote? */ { if (card[ii+1] == '\'') /* 2 successive quotes? */ { value[jj] = card[ii]; ii++; jj++; } else { value[jj] = card[ii]; break; /* found the closing quote, so exit this loop */ } } value[jj] = card[ii]; /* copy the next character to the output */ } if (ii == cardlen) { jj = minvalue(jj, 69); /* don't exceed 70 char string length */ value[jj] = '\''; /* close the bad value string */ value[jj+1] = '\0'; /* terminate the bad value string */ ffpmsg("This keyword string value has no closing quote:"); ffpmsg(card); /* May 2008 - modified to not fail on this minor error */ /* return(*status = NO_QUOTE); */ } else { value[jj+1] = '\0'; /* terminate the good value string */ ii++; /* point to the character following the value */ } } else if (card[ii] == '(' ) /* is this a complex value? */ { nblank = strcspn(&card[ii], ")" ); /* find closing ) */ if (nblank == strlen( &card[ii] ) ) { ffpmsg("This complex keyword value has no closing ')':"); ffpmsg(card); return(*status = NO_QUOTE); } nblank++; strncpy(value, &card[ii], nblank); value[nblank] = '\0'; ii = ii + nblank; } else /* an integer, floating point, or logical FITS value string */ { nblank = strcspn(&card[ii], " /"); /* find the end of the token */ strncpy(value, &card[ii], nblank); value[nblank] = '\0'; ii = ii + nblank; } /* now find the comment string, if any */ if (comm) { nblank = strspn(&card[ii], " "); /* find next non-space character */ ii = ii + nblank; if (ii < 80) { if (card[ii] == '/') /* ignore the slash separator */ { ii++; if (card[ii] == ' ') /* also ignore the following space */ ii++; } strcat(comm, &card[ii]); /* copy the remaining characters */ jj=strlen(comm); for (jj--; jj >= 0; jj--) /* replace trailing blanks with nulls */ { if (comm[jj] == ' ') comm[jj] = '\0'; else break; } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffgthd(char *tmplt, /* I - input header template string */ char *card, /* O - returned FITS header record */ int *hdtype, /* O - how to interpreter the returned card string */ /* -2 = modify the name of a keyword; the old keyword name is returned starting at address chars[0]; the new name is returned starting at address char[40] (to be consistent with the Fortran version). Both names are null terminated. -1 = card contains the name of a keyword that is to be deleted 0 = append this keyword if it doesn't already exist, or modify the value if the keyword already exists. 1 = append this comment keyword ('HISTORY', 'COMMENT', or blank keyword name) 2 = this is the END keyword; do not write it to the header */ int *status) /* IO - error status */ /* 'Get Template HeaDer' parse a template header line and create a formated character string which is suitable for appending to a FITS header */ { char keyname[FLEN_KEYWORD], value[140], comment[140]; char *tok, *suffix, *loc, tvalue[140]; int len, vlen, more, tstatus; double dval; if (*status > 0) return(*status); card[0] = '\0'; *hdtype = 0; if (!FSTRNCMP(tmplt, " ", 8) ) { /* if first 8 chars of template are blank, then this is a comment */ strncat(card, tmplt, 80); *hdtype = 1; return(*status); } tok = tmplt; /* point to start of template string */ keyname[0] = '\0'; value[0] = '\0'; comment[0] = '\0'; len = strspn(tok, " "); /* no. of spaces before keyword */ tok += len; /* test for pecular case where token is a string of dashes */ if (strncmp(tok, "--------------------", 20) == 0) return(*status = BAD_KEYCHAR); if (tok[0] == '-') /* is there a leading minus sign? */ { /* first token is name of keyword to be deleted or renamed */ *hdtype = -1; tok++; len = strspn(tok, " "); /* no. of spaces before keyword */ tok += len; if (len < 8) /* not a blank name? */ { len = strcspn(tok, " ="); /* length of name */ if (len >= FLEN_KEYWORD) return(*status = BAD_KEYCHAR); strncat(card, tok, len); /* The HIERARCH convention supports non-standard characters in the keyword name, so don't always convert to upper case or abort if there are illegal characters in the name or if the name is greater than 8 characters long. */ if (len < 9) /* this is possibly a normal FITS keyword name */ { ffupch(card); tstatus = 0; if (fftkey(card, &tstatus) > 0) { /* name contained non-standard characters, so reset */ card[0] = '\0'; strncat(card, tok, len); } } tok += len; } /* second token, if present, is the new name for the keyword */ len = strspn(tok, " "); /* no. of spaces before next token */ tok += len; if (tok[0] == '\0' || tok[0] == '=') return(*status); /* no second token */ *hdtype = -2; len = strcspn(tok, " "); /* length of new name */ if (len > 40) /* name has to fit on columns 41-80 of card */ return(*status = BAD_KEYCHAR); /* copy the new name to card + 40; This is awkward, */ /* but is consistent with the way the Fortran FITSIO works */ strcat(card," "); strncpy(&card[40], tok, len+1); /* copy len+1 to get terminator */ /* The HIERARCH convention supports non-standard characters in the keyword name, so don't always convert to upper case or abort if there are illegal characters in the name or if the name is greater than 8 characters long. */ if (len < 9) /* this is possibly a normal FITS keyword name */ { ffupch(&card[40]); tstatus = 0; if (fftkey(&card[40], &tstatus) > 0) { /* name contained non-standard characters, so reset */ strncpy(&card[40], tok, len); } } } else /* no negative sign at beginning of template */ { /* get the keyword name token */ len = strcspn(tok, " ="); /* length of keyword name */ if (len >= FLEN_KEYWORD) return(*status = BAD_KEYCHAR); strncat(keyname, tok, len); /* The HIERARCH convention supports non-standard characters in the keyword name, so don't always convert to upper case or abort if there are illegal characters in the name or if the name is greater than 8 characters long. */ if (len < 9) /* this is possibly a normal FITS keyword name */ { ffupch(keyname); tstatus = 0; if (fftkey(keyname, &tstatus) > 0) { /* name contained non-standard characters, so reset */ keyname[0] = '\0'; strncat(keyname, tok, len); } } if (!FSTRCMP(keyname, "END") ) { strcpy(card, "END"); *hdtype = 2; return(*status); } tok += len; /* move token pointer to end of the keyword */ if (!FSTRCMP(keyname, "COMMENT") || !FSTRCMP(keyname, "HISTORY") || !FSTRCMP(keyname, "HIERARCH") ) { *hdtype = 1; /* simply append COMMENT and HISTORY keywords */ strcpy(card, keyname); strncat(card, tok, 73); return(*status); } /* look for the value token */ len = strspn(tok, " ="); /* spaces or = between name and value */ tok += len; if (*tok == '\'') /* is value enclosed in quotes? */ { more = TRUE; while (more) { tok++; /* temporarily move past the quote char */ len = strcspn(tok, "'"); /* length of quoted string */ tok--; strncat(value, tok, len + 2); tok += len + 1; if (tok[0] != '\'') /* check there is a closing quote */ return(*status = NO_QUOTE); tok++; if (tok[0] != '\'') /* 2 quote chars = literal quote */ more = FALSE; } } else if (*tok == '/' || *tok == '\0') /* There is no value */ { strcat(value, " "); } else /* not a quoted string value */ { len = strcspn(tok, " /"); /* length of value string */ strncat(value, tok, len); if (!( (tok[0] == 'T' || tok[0] == 'F') && (tok[1] == ' ' || tok[1] == '/' || tok[1] == '\0') )) { /* not a logical value */ dval = strtod(value, &suffix); /* try to read value as number */ if (*suffix != '\0' && *suffix != ' ' && *suffix != '/') { /* value not recognized as a number; might be because it */ /* contains a 'd' or 'D' exponent character */ strcpy(tvalue, value); if ((loc = strchr(tvalue, 'D'))) { *loc = 'E'; /* replace D's with E's. */ dval = strtod(tvalue, &suffix); /* read value again */ } else if ((loc = strchr(tvalue, 'd'))) { *loc = 'E'; /* replace d's with E's. */ dval = strtod(tvalue, &suffix); /* read value again */ } else if ((loc = strchr(tvalue, '.'))) { *loc = ','; /* replace period with a comma */ dval = strtod(tvalue, &suffix); /* read value again */ } } if (*suffix != '\0' && *suffix != ' ' && *suffix != '/') { /* value is not a number; must enclose it in quotes */ strcpy(value, "'"); strncat(value, tok, len); strcat(value, "'"); /* the following useless statement stops the compiler warning */ /* that dval is not used anywhere */ if (dval == 0.) len += (int) dval; } else { /* value is a number; convert any 'e' to 'E', or 'd' to 'D' */ loc = strchr(value, 'e'); if (loc) { *loc = 'E'; } else { loc = strchr(value, 'd'); if (loc) { *loc = 'D'; } } } } tok += len; } len = strspn(tok, " /"); /* no. of spaces between value and comment */ tok += len; vlen = strlen(value); if (vlen > 0 && vlen < 10 && value[0] == '\'') { /* pad quoted string with blanks so it is at least 8 chars long */ value[vlen-1] = '\0'; strncat(value, " ", 10 - vlen); strcat(&value[9], "'"); } /* get the comment string */ strncat(comment, tok, 70); /* construct the complete FITS header card */ ffmkky(keyname, value, comment, card, status); } return(*status); } /*--------------------------------------------------------------------------*/ int fits_translate_keyword( char *inrec, /* I - input string */ char *outrec, /* O - output converted string, or */ /* a null string if input does not */ /* match any of the patterns */ char *patterns[][2],/* I - pointer to input / output string */ /* templates */ int npat, /* I - number of templates passed */ int n_value, /* I - base 'n' template value of interest */ int n_offset, /* I - offset to be applied to the 'n' */ /* value in the output string */ int n_range, /* I - controls range of 'n' template */ /* values of interest (-1,0, or +1) */ int *pat_num, /* O - matched pattern number (0 based) or -1 */ int *i, /* O - value of i, if any, else 0 */ int *j, /* O - value of j, if any, else 0 */ int *m, /* O - value of m, if any, else 0 */ int *n, /* O - value of n, if any, else 0 */ int *status) /* IO - error status */ /* Translate a keyword name to a new name, based on a set of patterns. The user passes an array of patterns to be matched. Input pattern number i is pattern[i][0], and output pattern number i is pattern[i][1]. Keywords are matched against the input patterns. If a match is found then the keyword is re-written according to the output pattern. Order is important. The first match is accepted. The fastest match will be made when templates with the same first character are grouped together. Several characters have special meanings: i,j - single digits, preserved in output template n - column number of one or more digits, preserved in output template m - generic number of one or more digits, preserved in output template a - coordinate designator, preserved in output template # - number of one or more digits ? - any character * - only allowed in first character position, to match all keywords; only useful as last pattern in the list i, j, n, and m are returned by the routine. For example, the input pattern "iCTYPn" will match "1CTYP5" (if n_value is 5); the output pattern "CTYPEi" will be re-written as "CTYPE1". Notice that "i" is preserved. The following output patterns are special Special output pattern characters: "-" - do not copy a keyword that matches the corresponding input pattern "+" - copy the input unchanged The inrec string could be just the 8-char keyword name, or the entire 80-char header record. Characters 9 = 80 in the input string simply get appended to the translated keyword name. If n_range = 0, then only keywords with 'n' equal to n_value will be considered as a pattern match. If n_range = +1, then all values of 'n' greater than or equal to n_value will be a match, and if -1, then values of 'n' less than or equal to n_value will match. This routine was written by Craig Markwardt, GSFC */ { int i1 = 0, j1 = 0, n1 = 0, m1 = 0; int fac; char a = ' '; char oldp; char c, s; int ip, ic, pat, pass = 0, firstfail; char *spat; if (*status > 0) return(*status); if ((inrec == 0) || (outrec == 0)) return (*status = NULL_INPUT_PTR); *outrec = '\0'; /* if (*inrec == '\0') return 0; */ if (*inrec == '\0') /* expand to full 8 char blank keyword name */ strcpy(inrec, " "); oldp = '\0'; firstfail = 0; /* ===== Pattern match stage */ for (pat=0; pat < npat; pat++) { spat = patterns[pat][0]; i1 = 0; j1 = 0; m1 = -1; n1 = -1; a = ' '; /* Initialize the place-holders */ pass = 0; /* Pass the wildcard pattern */ if (spat[0] == '*') { pass = 1; break; } /* Optimization: if we have seen this initial pattern character before, then it must have failed, and we can skip the pattern */ if (firstfail && spat[0] == oldp) continue; oldp = spat[0]; /* ip = index of pattern character being matched ic = index of keyname character being matched firstfail = 1 if we fail on the first characteor (0=not) */ for (ip=0, ic=0, firstfail=1; (spat[ip]) && (ic < 8); ip++, ic++, firstfail=0) { c = inrec[ic]; s = spat[ip]; if (s == 'i') { /* Special pattern: 'i' placeholder */ if (isdigit(c)) { i1 = c - '0'; pass = 1;} } else if (s == 'j') { /* Special pattern: 'j' placeholder */ if (isdigit(c)) { j1 = c - '0'; pass = 1;} } else if ((s == 'n')||(s == 'm')||(s == '#')) { /* Special patterns: multi-digit number */ int val = 0; pass = 0; if (isdigit(c)) { pass = 1; /* NOTE, could fail below */ /* Parse decimal number */ while (ic<8 && isdigit(c)) { val = val*10 + (c - '0'); ic++; c = inrec[ic]; } ic--; c = inrec[ic]; if (s == 'n') { /* Is it a column number? */ if ( val >= 1 && val <= 999 && /* Row range check */ (((n_range == 0) && (val == n_value)) || /* Strict equality */ ((n_range == -1) && (val <= n_value)) || /* n <= n_value */ ((n_range == +1) && (val >= n_value))) ) { /* n >= n_value */ n1 = val; } else { pass = 0; } } else if (s == 'm') { /* Generic number */ m1 = val; } } } else if (s == 'a') { /* Special pattern: coordinate designator */ if (isupper(c) || c == ' ') { a = c; pass = 1;} } else if (s == '?') { /* Match any individual character */ pass = 1; } else if (c == s) { /* Match a specific character */ pass = 1; } else { /* FAIL */ pass = 0; } if (!pass) break; } /* Must pass to the end of the keyword. No partial matches allowed */ if (pass && (ic >= 8 || inrec[ic] == ' ')) break; } /* Transfer the pattern-matched numbers to the output parameters */ if (i) { *i = i1; } if (j) { *j = j1; } if (n) { *n = n1; } if (m) { *m = m1; } if (pat_num) { *pat_num = pat; } /* ===== Keyword rewriting and output stage */ spat = patterns[pat][1]; /* Return case: no match, or explicit deletion pattern */ if (pass == 0 || spat[0] == '\0' || spat[0] == '-') return 0; /* A match: we start by copying the input record to the output */ strcpy(outrec, inrec); /* Return case: return the input record unchanged */ if (spat[0] == '+') return 0; /* Final case: a new output pattern */ for (ip=0, ic=0; spat[ip]; ip++, ic++) { s = spat[ip]; if (s == 'i') { outrec[ic] = (i1+'0'); } else if (s == 'j') { outrec[ic] = (j1+'0'); } else if (s == 'n') { if (n1 == -1) { n1 = n_value; } if (n1 > 0) { n1 += n_offset; for (fac = 1; (n1/fac) > 0; fac *= 10); fac /= 10; while(fac > 0) { outrec[ic] = ((n1/fac) % 10) + '0'; fac /= 10; ic ++; } ic--; } } else if (s == 'm' && m1 >= 0) { for (fac = 1; (m1/fac) > 0; fac *= 10); fac /= 10; while(fac > 0) { outrec[ic] = ((m1/fac) % 10) + '0'; fac /= 10; ic ++; } ic --; } else if (s == 'a') { outrec[ic] = a; } else { outrec[ic] = s; } } /* Pad the keyword name with spaces */ for ( ; ic<8; ic++) { outrec[ic] = ' '; } return(*status); } /*--------------------------------------------------------------------------*/ int fits_translate_keywords( fitsfile *infptr, /* I - pointer to input HDU */ fitsfile *outfptr, /* I - pointer to output HDU */ int firstkey, /* I - first HDU record number to start with */ char *patterns[][2],/* I - pointer to input / output keyword templates */ int npat, /* I - number of templates passed */ int n_value, /* I - base 'n' template value of interest */ int n_offset, /* I - offset to be applied to the 'n' */ /* value in the output string */ int n_range, /* I - controls range of 'n' template */ /* values of interest (-1,0, or +1) */ int *status) /* IO - error status */ /* Copy relevant keywords from the table header into the newly created primary array header. Convert names of keywords where appropriate. See fits_translate_keyword() for the definitions. Translation begins at header record number 'firstkey', and continues to the end of the header. This routine was written by Craig Markwardt, GSFC */ { int nrec, nkeys, nmore; char rec[FLEN_CARD]; int i = 0, j = 0, n = 0, m = 0; int pat_num = 0, maxchr, ii; char outrec[FLEN_CARD]; if (*status > 0) return(*status); ffghsp(infptr, &nkeys, &nmore, status); /* get number of keywords */ for (nrec = firstkey; nrec <= nkeys; nrec++) { outrec[0] = '\0'; ffgrec(infptr, nrec, rec, status); /* silently overlook any illegal ASCII characters in the value or */ /* comment fields of the record. It is usually not appropriate to */ /* abort the process because of this minor transgression of the FITS rules. */ /* Set the offending character to a blank */ maxchr = strlen(rec); for (ii = 8; ii < maxchr; ii++) { if (rec[ii] < 32 || rec[ii] > 126) rec[ii] = ' '; } fits_translate_keyword(rec, outrec, patterns, npat, n_value, n_offset, n_range, &pat_num, &i, &j, &m, &n, status); if (outrec[0]) { ffprec(outfptr, outrec, status); /* copy the keyword */ rec[8] = 0; outrec[8] = 0; } else { rec[8] = 0; outrec[8] = 0; } } return(*status); } /*--------------------------------------------------------------------------*/ int fits_copy_pixlist2image( fitsfile *infptr, /* I - pointer to input HDU */ fitsfile *outfptr, /* I - pointer to output HDU */ int firstkey, /* I - first HDU record number to start with */ int naxis, /* I - number of axes in the image */ int *colnum, /* I - numbers of the columns to be binned */ int *status) /* IO - error status */ /* Copy relevant keywords from the pixel list table header into a newly created primary array header. Convert names of keywords where appropriate. See fits_translate_pixkeyword() for the definitions. Translation begins at header record number 'firstkey', and continues to the end of the header. */ { int nrec, nkeys, nmore; char rec[FLEN_CARD], outrec[FLEN_CARD]; int pat_num = 0, npat; int iret, jret, nret, mret, lret; char *patterns[][2] = { {"TCTYPn", "CTYPEn" }, {"TCTYna", "CTYPEna" }, {"TCUNIn", "CUNITn" }, {"TCUNna", "CUNITna" }, {"TCRVLn", "CRVALn" }, {"TCRVna", "CRVALna" }, {"TCDLTn", "CDELTn" }, {"TCDEna", "CDELTna" }, {"TCRPXn", "CRPIXn" }, {"TCRPna", "CRPIXna" }, {"TCROTn", "CROTAn" }, {"TPn_ma", "PCn_ma" }, {"TPCn_m", "PCn_ma" }, {"TCn_ma", "CDn_ma" }, {"TCDn_m", "CDn_ma" }, {"TVn_la", "PVn_la" }, {"TPVn_l", "PVn_la" }, {"TSn_la", "PSn_la" }, {"TPSn_l", "PSn_la" }, {"TWCSna", "WCSNAMEa" }, {"TCNAna", "CNAMEna" }, {"TCRDna", "CRDERna" }, {"TCSYna", "CSYERna" }, {"LONPna", "LONPOLEa" }, {"LATPna", "LATPOLEa" }, {"EQUIna", "EQUINOXa" }, {"MJDOBn", "MJD-OBS" }, {"MJDAn", "MJD-AVG" }, {"DAVGn", "DATE-AVG" }, {"RADEna", "RADESYSa" }, {"RFRQna", "RESTFRQa" }, {"RWAVna", "RESTWAVa" }, {"SPECna", "SPECSYSa" }, {"SOBSna", "SSYSOBSa" }, {"SSRCna", "SSYSSRCa" }, /* preserve common keywords */ {"LONPOLEa", "+" }, {"LATPOLEa", "+" }, {"EQUINOXa", "+" }, {"EPOCH", "+" }, {"MJD-????", "+" }, {"DATE????", "+" }, {"TIME????", "+" }, {"RADESYSa", "+" }, {"RADECSYS", "+" }, {"TELESCOP", "+" }, {"INSTRUME", "+" }, {"OBSERVER", "+" }, {"OBJECT", "+" }, /* Delete general table column keywords */ {"XTENSION", "-" }, {"BITPIX", "-" }, {"NAXIS", "-" }, {"NAXISi", "-" }, {"PCOUNT", "-" }, {"GCOUNT", "-" }, {"TFIELDS", "-" }, {"TDIM#", "-" }, {"THEAP", "-" }, {"EXTNAME", "-" }, {"EXTVER", "-" }, {"EXTLEVEL","-" }, {"CHECKSUM","-" }, {"DATASUM", "-" }, {"NAXLEN", "-" }, {"AXLEN#", "-" }, {"CPREF", "-" }, /* Delete table keywords related to other columns */ {"T????#a", "-" }, {"TC??#a", "-" }, {"T??#_#", "-" }, {"TWCS#a", "-" }, {"LONP#a", "-" }, {"LATP#a", "-" }, {"EQUI#a", "-" }, {"MJDOB#", "-" }, {"MJDA#", "-" }, {"RADE#a", "-" }, {"DAVG#", "-" }, {"iCTYP#", "-" }, {"iCTY#a", "-" }, {"iCUNI#", "-" }, {"iCUN#a", "-" }, {"iCRVL#", "-" }, {"iCDLT#", "-" }, {"iCRPX#", "-" }, {"iCTY#a", "-" }, {"iCUN#a", "-" }, {"iCRV#a", "-" }, {"iCDE#a", "-" }, {"iCRP#a", "-" }, {"ijPC#a", "-" }, {"ijCD#a", "-" }, {"iV#_#a", "-" }, {"iS#_#a", "-" }, {"iCRD#a", "-" }, {"iCSY#a", "-" }, {"iCROT#", "-" }, {"WCAX#a", "-" }, {"WCSN#a", "-" }, {"iCNA#a", "-" }, {"*", "+" }}; /* copy all other keywords */ if (*status > 0) return(*status); npat = sizeof(patterns)/sizeof(patterns[0][0])/2; ffghsp(infptr, &nkeys, &nmore, status); /* get number of keywords */ for (nrec = firstkey; nrec <= nkeys; nrec++) { outrec[0] = '\0'; ffgrec(infptr, nrec, rec, status); fits_translate_pixkeyword(rec, outrec, patterns, npat, naxis, colnum, &pat_num, &iret, &jret, &nret, &mret, &lret, status); if (outrec[0]) { ffprec(outfptr, outrec, status); /* copy the keyword */ } rec[8] = 0; outrec[8] = 0; } return(*status); } /*--------------------------------------------------------------------------*/ int fits_translate_pixkeyword( char *inrec, /* I - input string */ char *outrec, /* O - output converted string, or */ /* a null string if input does not */ /* match any of the patterns */ char *patterns[][2],/* I - pointer to input / output string */ /* templates */ int npat, /* I - number of templates passed */ int naxis, /* I - number of columns to be binned */ int *colnum, /* I - numbers of the columns to be binned */ int *pat_num, /* O - matched pattern number (0 based) or -1 */ int *i, int *j, int *n, int *m, int *l, int *status) /* IO - error status */ /* Translate a keyword name to a new name, based on a set of patterns. The user passes an array of patterns to be matched. Input pattern number i is pattern[i][0], and output pattern number i is pattern[i][1]. Keywords are matched against the input patterns. If a match is found then the keyword is re-written according to the output pattern. Order is important. The first match is accepted. The fastest match will be made when templates with the same first character are grouped together. Several characters have special meanings: i,j - single digits, preserved in output template n, m - column number of one or more digits, preserved in output template k - generic number of one or more digits, preserved in output template a - coordinate designator, preserved in output template # - number of one or more digits ? - any character * - only allowed in first character position, to match all keywords; only useful as last pattern in the list i, j, n, and m are returned by the routine. For example, the input pattern "iCTYPn" will match "1CTYP5" (if n_value is 5); the output pattern "CTYPEi" will be re-written as "CTYPE1". Notice that "i" is preserved. The following output patterns are special Special output pattern characters: "-" - do not copy a keyword that matches the corresponding input pattern "+" - copy the input unchanged The inrec string could be just the 8-char keyword name, or the entire 80-char header record. Characters 9 = 80 in the input string simply get appended to the translated keyword name. If n_range = 0, then only keywords with 'n' equal to n_value will be considered as a pattern match. If n_range = +1, then all values of 'n' greater than or equal to n_value will be a match, and if -1, then values of 'n' less than or equal to n_value will match. */ { int i1 = 0, j1 = 0, val; int fac, nval = 0, mval = 0, lval = 0; char a = ' '; char oldp; char c, s; int ip, ic, pat, pass = 0, firstfail; char *spat; if (*status > 0) return(*status); if ((inrec == 0) || (outrec == 0)) return (*status = NULL_INPUT_PTR); *outrec = '\0'; if (*inrec == '\0') return 0; oldp = '\0'; firstfail = 0; /* ===== Pattern match stage */ for (pat=0; pat < npat; pat++) { spat = patterns[pat][0]; i1 = 0; j1 = 0; a = ' '; /* Initialize the place-holders */ pass = 0; /* Pass the wildcard pattern */ if (spat[0] == '*') { pass = 1; break; } /* Optimization: if we have seen this initial pattern character before, then it must have failed, and we can skip the pattern */ if (firstfail && spat[0] == oldp) continue; oldp = spat[0]; /* ip = index of pattern character being matched ic = index of keyname character being matched firstfail = 1 if we fail on the first characteor (0=not) */ for (ip=0, ic=0, firstfail=1; (spat[ip]) && (ic < 8); ip++, ic++, firstfail=0) { c = inrec[ic]; s = spat[ip]; if (s == 'i') { /* Special pattern: 'i' placeholder */ if (isdigit(c)) { i1 = c - '0'; pass = 1;} } else if (s == 'j') { /* Special pattern: 'j' placeholder */ if (isdigit(c)) { j1 = c - '0'; pass = 1;} } else if ((s == 'n')||(s == 'm')||(s == 'l')||(s == '#')) { /* Special patterns: multi-digit number */ val = 0; pass = 0; if (isdigit(c)) { pass = 1; /* NOTE, could fail below */ /* Parse decimal number */ while (ic<8 && isdigit(c)) { val = val*10 + (c - '0'); ic++; c = inrec[ic]; } ic--; c = inrec[ic]; if (s == 'n' || s == 'm') { /* Is it a column number? */ if ( val >= 1 && val <= 999) { if (val == colnum[0]) val = 1; else if (val == colnum[1]) val = 2; else if (val == colnum[2]) val = 3; else if (val == colnum[3]) val = 4; else { pass = 0; val = 0; } if (s == 'n') nval = val; else mval = val; } else { pass = 0; } } else if (s == 'l') { /* Generic number */ lval = val; } } } else if (s == 'a') { /* Special pattern: coordinate designator */ if (isupper(c) || c == ' ') { a = c; pass = 1;} } else if (s == '?') { /* Match any individual character */ pass = 1; } else if (c == s) { /* Match a specific character */ pass = 1; } else { /* FAIL */ pass = 0; } if (!pass) break; } /* Must pass to the end of the keyword. No partial matches allowed */ if (pass && (ic >= 8 || inrec[ic] == ' ')) break; } /* Transfer the pattern-matched numbers to the output parameters */ if (i) { *i = i1; } if (j) { *j = j1; } if (n) { *n = nval; } if (m) { *m = mval; } if (l) { *l = lval; } if (pat_num) { *pat_num = pat; } /* ===== Keyword rewriting and output stage */ spat = patterns[pat][1]; /* Return case: no match, or explicit deletion pattern */ if (pass == 0 || spat[0] == '\0' || spat[0] == '-') return 0; /* A match: we start by copying the input record to the output */ strcpy(outrec, inrec); /* Return case: return the input record unchanged */ if (spat[0] == '+') return 0; /* Final case: a new output pattern */ for (ip=0, ic=0; spat[ip]; ip++, ic++) { s = spat[ip]; if (s == 'i') { outrec[ic] = (i1+'0'); } else if (s == 'j') { outrec[ic] = (j1+'0'); } else if (s == 'n' && nval > 0) { for (fac = 1; (nval/fac) > 0; fac *= 10); fac /= 10; while(fac > 0) { outrec[ic] = ((nval/fac) % 10) + '0'; fac /= 10; ic ++; } ic--; } else if (s == 'm' && mval > 0) { for (fac = 1; (mval/fac) > 0; fac *= 10); fac /= 10; while(fac > 0) { outrec[ic] = ((mval/fac) % 10) + '0'; fac /= 10; ic ++; } ic--; } else if (s == 'l' && lval >= 0) { for (fac = 1; (lval/fac) > 0; fac *= 10); fac /= 10; while(fac > 0) { outrec[ic] = ((lval/fac) % 10) + '0'; fac /= 10; ic ++; } ic --; } else if (s == 'a') { outrec[ic] = a; } else { outrec[ic] = s; } } /* Pad the keyword name with spaces */ for ( ; ic<8; ic++) { outrec[ic] = ' '; } return(*status); } /*--------------------------------------------------------------------------*/ int ffasfm(char *tform, /* I - format code from the TFORMn keyword */ int *dtcode, /* O - numerical datatype code */ long *twidth, /* O - width of the field, in chars */ int *decimals, /* O - number of decimal places (F, E, D format) */ int *status) /* IO - error status */ { /* parse the ASCII table TFORM column format to determine the data type, the field width, and number of decimal places (if relevant) */ int ii, datacode; long longval, width; float fwidth; char *form, temp[FLEN_VALUE], message[FLEN_ERRMSG]; if (*status > 0) return(*status); if (dtcode) *dtcode = 0; if (twidth) *twidth = 0; if (decimals) *decimals = 0; ii = 0; while (tform[ii] != 0 && tform[ii] == ' ') /* find first non-blank char */ ii++; strcpy(temp, &tform[ii]); /* copy format string */ ffupch(temp); /* make sure it is in upper case */ form = temp; /* point to start of format string */ if (form[0] == 0) { ffpmsg("Error: ASCII table TFORM code is blank"); return(*status = BAD_TFORM); } /*-----------------------------------------------*/ /* determine default datatype code */ /*-----------------------------------------------*/ if (form[0] == 'A') datacode = TSTRING; else if (form[0] == 'I') datacode = TLONG; else if (form[0] == 'F') datacode = TFLOAT; else if (form[0] == 'E') datacode = TFLOAT; else if (form[0] == 'D') datacode = TDOUBLE; else { sprintf(message, "Illegal ASCII table TFORMn datatype: \'%s\'", tform); ffpmsg(message); return(*status = BAD_TFORM_DTYPE); } if (dtcode) *dtcode = datacode; form++; /* point to the start of field width */ if (datacode == TSTRING || datacode == TLONG) { /*-----------------------------------------------*/ /* A or I data formats: */ /*-----------------------------------------------*/ if (ffc2ii(form, &width, status) <= 0) /* read the width field */ { if (width <= 0) { width = 0; *status = BAD_TFORM; } else { /* set to shorter precision if I4 or less */ if (width <= 4 && datacode == TLONG) datacode = TSHORT; } } } else { /*-----------------------------------------------*/ /* F, E or D data formats: */ /*-----------------------------------------------*/ if (ffc2rr(form, &fwidth, status) <= 0) /* read ww.dd width field */ { if (fwidth <= 0.) *status = BAD_TFORM; else { width = (long) fwidth; /* convert from float to long */ if (width > 7 && *temp == 'F') datacode = TDOUBLE; /* type double if >7 digits */ if (width < 10) form = form + 1; /* skip 1 digit */ else form = form + 2; /* skip 2 digits */ if (form[0] == '.') /* should be a decimal point here */ { form++; /* point to start of decimals field */ if (ffc2ii(form, &longval, status) <= 0) /* read decimals */ { if (decimals) *decimals = longval; /* long to short convertion */ if (longval >= width) /* width < no. of decimals */ *status = BAD_TFORM; if (longval > 6 && *temp == 'E') datacode = TDOUBLE; /* type double if >6 digits */ } } } } } if (*status > 0) { *status = BAD_TFORM; sprintf(message,"Illegal ASCII table TFORMn code: \'%s\'", tform); ffpmsg(message); } if (dtcode) *dtcode = datacode; if (twidth) *twidth = width; return(*status); } /*--------------------------------------------------------------------------*/ int ffbnfm(char *tform, /* I - format code from the TFORMn keyword */ int *dtcode, /* O - numerical datatype code */ long *trepeat, /* O - repeat count of the field */ long *twidth, /* O - width of the field, in chars */ int *status) /* IO - error status */ { /* parse the binary table TFORM column format to determine the data type, repeat count, and the field width (if it is an ASCII (A) field) */ size_t ii, nchar; int datacode, variable, iread; long width, repeat; char *form, temp[FLEN_VALUE], message[FLEN_ERRMSG]; if (*status > 0) return(*status); if (dtcode) *dtcode = 0; if (trepeat) *trepeat = 0; if (twidth) *twidth = 0; nchar = strlen(tform); for (ii = 0; ii < nchar; ii++) { if (tform[ii] != ' ') /* find first non-space char */ break; } if (ii == nchar) { ffpmsg("Error: binary table TFORM code is blank (ffbnfm)."); return(*status = BAD_TFORM); } strcpy(temp, &tform[ii]); /* copy format string */ ffupch(temp); /* make sure it is in upper case */ form = temp; /* point to start of format string */ /*-----------------------------------------------*/ /* get the repeat count */ /*-----------------------------------------------*/ ii = 0; while(isdigit((int) form[ii])) ii++; /* look for leading digits in the field */ if (ii == 0) repeat = 1; /* no explicit repeat count */ else sscanf(form,"%ld", &repeat); /* read repeat count */ /*-----------------------------------------------*/ /* determine datatype code */ /*-----------------------------------------------*/ form = form + ii; /* skip over the repeat field */ if (form[0] == 'P' || form[0] == 'Q') { variable = 1; /* this is a variable length column */ /* repeat = 1; */ /* disregard any other repeat value */ form++; /* move to the next data type code char */ } else variable = 0; if (form[0] == 'U') /* internal code to signify unsigned integer */ { datacode = TUSHORT; width = 2; } else if (form[0] == 'I') { datacode = TSHORT; width = 2; } else if (form[0] == 'V') /* internal code to signify unsigned integer */ { datacode = TULONG; width = 4; } else if (form[0] == 'J') { datacode = TLONG; width = 4; } else if (form[0] == 'K') { datacode = TLONGLONG; width = 8; } else if (form[0] == 'E') { datacode = TFLOAT; width = 4; } else if (form[0] == 'D') { datacode = TDOUBLE; width = 8; } else if (form[0] == 'A') { datacode = TSTRING; /* the following code is used to support the non-standard datatype of the form rAw where r = total width of the field and w = width of fixed-length substrings within the field. */ iread = 0; if (form[1] != 0) { if (form[1] == '(' ) /* skip parenthesis around */ form++; /* variable length column width */ iread = sscanf(&form[1],"%ld", &width); } if (iread != 1 || (!variable && (width > repeat)) ) width = repeat; } else if (form[0] == 'L') { datacode = TLOGICAL; width = 1; } else if (form[0] == 'X') { datacode = TBIT; width = 1; } else if (form[0] == 'B') { datacode = TBYTE; width = 1; } else if (form[0] == 'S') /* internal code to signify signed byte */ { datacode = TSBYTE; width = 1; } else if (form[0] == 'C') { datacode = TCOMPLEX; width = 8; } else if (form[0] == 'M') { datacode = TDBLCOMPLEX; width = 16; } else { sprintf(message, "Illegal binary table TFORMn datatype: \'%s\' ", tform); ffpmsg(message); return(*status = BAD_TFORM_DTYPE); } if (variable) datacode = datacode * (-1); /* flag variable cols w/ neg type code */ if (dtcode) *dtcode = datacode; if (trepeat) *trepeat = repeat; if (twidth) *twidth = width; return(*status); } /*--------------------------------------------------------------------------*/ int ffbnfmll(char *tform, /* I - format code from the TFORMn keyword */ int *dtcode, /* O - numerical datatype code */ LONGLONG *trepeat, /* O - repeat count of the field */ long *twidth, /* O - width of the field, in chars */ int *status) /* IO - error status */ { /* parse the binary table TFORM column format to determine the data type, repeat count, and the field width (if it is an ASCII (A) field) */ size_t ii, nchar; int datacode, variable, iread; long width; LONGLONG repeat; char *form, temp[FLEN_VALUE], message[FLEN_ERRMSG]; double drepeat; if (*status > 0) return(*status); if (dtcode) *dtcode = 0; if (trepeat) *trepeat = 0; if (twidth) *twidth = 0; nchar = strlen(tform); for (ii = 0; ii < nchar; ii++) { if (tform[ii] != ' ') /* find first non-space char */ break; } if (ii == nchar) { ffpmsg("Error: binary table TFORM code is blank (ffbnfmll)."); return(*status = BAD_TFORM); } strcpy(temp, &tform[ii]); /* copy format string */ ffupch(temp); /* make sure it is in upper case */ form = temp; /* point to start of format string */ /*-----------------------------------------------*/ /* get the repeat count */ /*-----------------------------------------------*/ ii = 0; while(isdigit((int) form[ii])) ii++; /* look for leading digits in the field */ if (ii == 0) repeat = 1; /* no explicit repeat count */ else { /* read repeat count */ /* print as double, because the string-to-64-bit int conversion */ /* character is platform dependent (%lld, %ld, %I64d) */ sscanf(form,"%lf", &drepeat); repeat = (LONGLONG) (drepeat + 0.1); } /*-----------------------------------------------*/ /* determine datatype code */ /*-----------------------------------------------*/ form = form + ii; /* skip over the repeat field */ if (form[0] == 'P' || form[0] == 'Q') { variable = 1; /* this is a variable length column */ /* repeat = 1; */ /* disregard any other repeat value */ form++; /* move to the next data type code char */ } else variable = 0; if (form[0] == 'U') /* internal code to signify unsigned integer */ { datacode = TUSHORT; width = 2; } else if (form[0] == 'I') { datacode = TSHORT; width = 2; } else if (form[0] == 'V') /* internal code to signify unsigned integer */ { datacode = TULONG; width = 4; } else if (form[0] == 'J') { datacode = TLONG; width = 4; } else if (form[0] == 'K') { datacode = TLONGLONG; width = 8; } else if (form[0] == 'E') { datacode = TFLOAT; width = 4; } else if (form[0] == 'D') { datacode = TDOUBLE; width = 8; } else if (form[0] == 'A') { datacode = TSTRING; /* the following code is used to support the non-standard datatype of the form rAw where r = total width of the field and w = width of fixed-length substrings within the field. */ iread = 0; if (form[1] != 0) { if (form[1] == '(' ) /* skip parenthesis around */ form++; /* variable length column width */ iread = sscanf(&form[1],"%ld", &width); } if (iread != 1 || (!variable && (width > repeat)) ) width = (long) repeat; } else if (form[0] == 'L') { datacode = TLOGICAL; width = 1; } else if (form[0] == 'X') { datacode = TBIT; width = 1; } else if (form[0] == 'B') { datacode = TBYTE; width = 1; } else if (form[0] == 'S') /* internal code to signify signed byte */ { datacode = TSBYTE; width = 1; } else if (form[0] == 'C') { datacode = TCOMPLEX; width = 8; } else if (form[0] == 'M') { datacode = TDBLCOMPLEX; width = 16; } else { sprintf(message, "Illegal binary table TFORMn datatype: \'%s\' ", tform); ffpmsg(message); return(*status = BAD_TFORM_DTYPE); } if (variable) datacode = datacode * (-1); /* flag variable cols w/ neg type code */ if (dtcode) *dtcode = datacode; if (trepeat) *trepeat = repeat; if (twidth) *twidth = width; return(*status); } /*--------------------------------------------------------------------------*/ void ffcfmt(char *tform, /* value of an ASCII table TFORMn keyword */ char *cform) /* equivalent format code in C language syntax */ /* convert the FITS format string for an ASCII Table extension column into the equivalent C format string that can be used in a printf statement, after the values have been read as a double. */ { int ii; cform[0] = '\0'; ii = 0; while (tform[ii] != 0 && tform[ii] == ' ') /* find first non-blank char */ ii++; if (tform[ii] == 0) return; /* input format string was blank */ cform[0] = '%'; /* start the format string */ strcpy(&cform[1], &tform[ii + 1]); /* append the width and decimal code */ if (tform[ii] == 'A') strcat(cform, "s"); else if (tform[ii] == 'I') strcat(cform, ".0f"); /* 0 precision to suppress decimal point */ if (tform[ii] == 'F') strcat(cform, "f"); if (tform[ii] == 'E') strcat(cform, "E"); if (tform[ii] == 'D') strcat(cform, "E"); return; } /*--------------------------------------------------------------------------*/ void ffcdsp(char *tform, /* value of an ASCII table TFORMn keyword */ char *cform) /* equivalent format code in C language syntax */ /* convert the FITS TDISPn display format into the equivalent C format suitable for use in a printf statement. */ { int ii; cform[0] = '\0'; ii = 0; while (tform[ii] != 0 && tform[ii] == ' ') /* find first non-blank char */ ii++; if (tform[ii] == 0) { cform[0] = '\0'; return; /* input format string was blank */ } if (strchr(tform+ii, '%')) /* is there a % character in the string?? */ { cform[0] = '\0'; return; /* illegal TFORM string (possibly even harmful) */ } cform[0] = '%'; /* start the format string */ strcpy(&cform[1], &tform[ii + 1]); /* append the width and decimal code */ if (tform[ii] == 'A' || tform[ii] == 'a') strcat(cform, "s"); else if (tform[ii] == 'I' || tform[ii] == 'i') strcat(cform, "d"); else if (tform[ii] == 'O' || tform[ii] == 'o') strcat(cform, "o"); else if (tform[ii] == 'Z' || tform[ii] == 'z') strcat(cform, "X"); else if (tform[ii] == 'F' || tform[ii] == 'f') strcat(cform, "f"); else if (tform[ii] == 'E' || tform[ii] == 'e') strcat(cform, "E"); else if (tform[ii] == 'D' || tform[ii] == 'd') strcat(cform, "E"); else if (tform[ii] == 'G' || tform[ii] == 'g') strcat(cform, "G"); else cform[0] = '\0'; /* unrecognized tform code */ return; } /*--------------------------------------------------------------------------*/ int ffgcno( fitsfile *fptr, /* I - FITS file pionter */ int casesen, /* I - case sensitive string comparison? 0=no */ char *templt, /* I - input name of column (w/wildcards) */ int *colnum, /* O - number of the named column; 1=first col */ int *status) /* IO - error status */ /* Determine the column number corresponding to an input column name. The first column of the table = column 1; This supports the * and ? wild cards in the input template. */ { char colname[FLEN_VALUE]; /* temporary string to hold column name */ ffgcnn(fptr, casesen, templt, colname, colnum, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcnn( fitsfile *fptr, /* I - FITS file pointer */ int casesen, /* I - case sensitive string comparison? 0=no */ char *templt, /* I - input name of column (w/wildcards) */ char *colname, /* O - full column name up to 68 + 1 chars long*/ int *colnum, /* O - number of the named column; 1=first col */ int *status) /* IO - error status */ /* Return the full column name and column number of the next column whose TTYPEn keyword value matches the input template string. The template may contain the * and ? wildcards. Status = 237 is returned if the match is not unique. If so, one may call this routine again with input status=237 to get the next match. A status value of 219 is returned when there are no more matching columns. */ { char errmsg[FLEN_ERRMSG]; int tstatus, ii, founde, foundw, match, exact, unique; long ivalue; tcolumn *colptr; if (*status <= 0) { (fptr->Fptr)->startcol = 0; /* start search with first column */ tstatus = 0; } else if (*status == COL_NOT_UNIQUE) /* start search from previous spot */ { tstatus = COL_NOT_UNIQUE; *status = 0; } else return(*status); /* bad input status value */ colname[0] = 0; /* initialize null return */ *colnum = 0; /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) /* rescan header to get col struct */ return(*status); colptr = (fptr->Fptr)->tableptr; /* pointer to first column */ colptr += ((fptr->Fptr)->startcol); /* offset to starting column */ founde = FALSE; /* initialize 'found exact match' flag */ foundw = FALSE; /* initialize 'found wildcard match' flag */ unique = FALSE; for (ii = (fptr->Fptr)->startcol; ii < (fptr->Fptr)->tfield; ii++, colptr++) { ffcmps(templt, colptr->ttype, casesen, &match, &exact); if (match) { if (founde && exact) { /* warning: this is the second exact match we've found */ /*reset pointer to first match so next search starts there */ (fptr->Fptr)->startcol = *colnum; return(*status = COL_NOT_UNIQUE); } else if (founde) /* a wildcard match */ { /* already found exact match so ignore this non-exact match */ } else if (exact) { /* this is the first exact match we have found, so save it. */ strcpy(colname, colptr->ttype); *colnum = ii + 1; founde = TRUE; } else if (foundw) { /* we have already found a wild card match, so not unique */ /* continue searching for other matches */ unique = FALSE; } else { /* this is the first wild card match we've found. save it */ strcpy(colname, colptr->ttype); *colnum = ii + 1; (fptr->Fptr)->startcol = *colnum; foundw = TRUE; unique = TRUE; } } } /* OK, we've checked all the names now see if we got any matches */ if (founde) { if (tstatus == COL_NOT_UNIQUE) /* we did find 1 exact match but */ *status = COL_NOT_UNIQUE; /* there was a previous match too */ } else if (foundw) { /* found one or more wildcard matches; report error if not unique */ if (!unique || tstatus == COL_NOT_UNIQUE) *status = COL_NOT_UNIQUE; } else { /* didn't find a match; check if template is a positive integer */ ffc2ii(templt, &ivalue, &tstatus); if (tstatus == 0 && ivalue <= (fptr->Fptr)->tfield && ivalue > 0) { *colnum = ivalue; colptr = (fptr->Fptr)->tableptr; /* pointer to first column */ colptr += (ivalue - 1); /* offset to correct column */ strcpy(colname, colptr->ttype); } else { *status = COL_NOT_FOUND; if (tstatus != COL_NOT_UNIQUE) { sprintf(errmsg, "ffgcnn could not find column: %.45s", templt); ffpmsg(errmsg); } } } (fptr->Fptr)->startcol = *colnum; /* save pointer for next time */ return(*status); } /*--------------------------------------------------------------------------*/ void ffcmps(char *templt, /* I - input template (may have wildcards) */ char *colname, /* I - full column name up to 68 + 1 chars long */ int casesen, /* I - case sensitive string comparison? 1=yes */ int *match, /* O - do template and colname match? 1=yes */ int *exact) /* O - do strings exactly match, or wildcards */ /* compare the template to the string and test if they match. The strings are limited to 68 characters or less (the max. length of a FITS string keyword value. This routine reports whether the two strings match and whether the match is exact or involves wildcards. This algorithm is very similar to the way unix filename wildcards work except that this first treats a wild card as a literal character when looking for a match. If there is no literal match, then it interpretes it as a wild card. So the template 'AB*DE' is considered to be an exact rather than a wild card match to the string 'AB*DE'. The '#' wild card in the template string will match any consecutive string of decimal digits in the colname. */ { int ii, found, t1, s1, wildsearch = 0, tsave = 0, ssave = 0; char temp[FLEN_VALUE], col[FLEN_VALUE]; *match = FALSE; *exact = TRUE; strncpy(temp, templt, FLEN_VALUE); /* copy strings to work area */ strncpy(col, colname, FLEN_VALUE); temp[FLEN_VALUE - 1] = '\0'; /* make sure strings are terminated */ col[FLEN_VALUE - 1] = '\0'; /* truncate trailing non-significant blanks */ for (ii = strlen(temp) - 1; ii >= 0 && temp[ii] == ' '; ii--) temp[ii] = '\0'; for (ii = strlen(col) - 1; ii >= 0 && col[ii] == ' '; ii--) col[ii] = '\0'; if (!casesen) { /* convert both strings to uppercase before comparison */ ffupch(temp); ffupch(col); } if (!FSTRCMP(temp, col) ) { *match = TRUE; /* strings exactly match */ return; } *exact = FALSE; /* strings don't exactly match */ t1 = 0; /* start comparison with 1st char of each string */ s1 = 0; while(1) /* compare corresponding chars in each string */ { if (temp[t1] == '\0' && col[s1] == '\0') { /* completely scanned both strings so they match */ *match = TRUE; return; } else if (temp[t1] == '\0') { if (wildsearch) { /* the previous wildcard search may have been going down a blind alley. Backtrack, and resume the wildcard search with the next character in the string. */ t1 = tsave; s1 = ssave + 1; } else { /* reached end of template string so they don't match */ return; } } else if (col[s1] == '\0') { /* reached end of other string; they match if the next */ /* character in the template string is a '*' wild card */ if (temp[t1] == '*' && temp[t1 + 1] == '\0') { *match = TRUE; } return; } if (temp[t1] == col[s1] || (temp[t1] == '?') ) { s1++; /* corresponding chars in the 2 strings match */ t1++; /* increment both pointers and loop back again */ } else if (temp[t1] == '#' && isdigit((int) col[s1]) ) { s1++; /* corresponding chars in the 2 strings match */ t1++; /* increment both pointers */ /* find the end of the string of digits */ while (isdigit((int) col[s1]) ) s1++; } else if (temp[t1] == '*') { /* save current string locations, in case we need to restart */ wildsearch = 1; tsave = t1; ssave = s1; /* get next char from template and look for it in the col name */ t1++; if (temp[t1] == '\0' || temp[t1] == ' ') { /* reached end of template so strings match */ *match = TRUE; return; } found = FALSE; while (col[s1] && !found) { if (temp[t1] == col[s1]) { t1++; /* found matching characters; incre both pointers */ s1++; /* and loop back to compare next chars */ found = TRUE; } else s1++; /* increment the column name pointer and try again */ } if (!found) { return; /* hit end of column name and failed to find a match */ } } else { if (wildsearch) { /* the previous wildcard search may have been going down a blind alley. Backtrack, and resume the wildcard search with the next character in the string. */ t1 = tsave; s1 = ssave + 1; } else { return; /* strings don't match */ } } } } /*--------------------------------------------------------------------------*/ int ffgtcl( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - column number */ int *typecode, /* O - datatype code (21 = short, etc) */ long *repeat, /* O - repeat count of field */ long *width, /* O - if ASCII, width of field or unit string */ int *status) /* IO - error status */ /* Get Type of table column. Returns the datatype code of the column, as well as the vector repeat count and (if it is an ASCII character column) the width of the field or a unit string within the field. This supports the TFORMn = 'rAw' syntax for specifying arrays of substrings, so if TFORMn = '60A12' then repeat = 60 and width = 12. */ { LONGLONG trepeat, twidth; ffgtclll(fptr, colnum, typecode, &trepeat, &twidth, status); if (*status > 0) return(*status); if (repeat) *repeat= (long) trepeat; if (width) *width = (long) twidth; return(*status); } /*--------------------------------------------------------------------------*/ int ffgtclll( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - column number */ int *typecode, /* O - datatype code (21 = short, etc) */ LONGLONG *repeat, /* O - repeat count of field */ LONGLONG *width, /* O - if ASCII, width of field or unit string */ int *status) /* IO - error status */ /* Get Type of table column. Returns the datatype code of the column, as well as the vector repeat count and (if it is an ASCII character column) the width of the field or a unit string within the field. This supports the TFORMn = 'rAw' syntax for specifying arrays of substrings, so if TFORMn = '60A12' then repeat = 60 and width = 12. */ { tcolumn *colptr; int hdutype, decims; long tmpwidth; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); if (colnum < 1 || colnum > (fptr->Fptr)->tfield) return(*status = BAD_COL_NUM); colptr = (fptr->Fptr)->tableptr; /* pointer to first column */ colptr += (colnum - 1); /* offset to correct column */ if (ffghdt(fptr, &hdutype, status) > 0) return(*status); if (hdutype == ASCII_TBL) { ffasfm(colptr->tform, typecode, &tmpwidth, &decims, status); *width = tmpwidth; if (repeat) *repeat = 1; } else { if (typecode) *typecode = colptr->tdatatype; if (width) *width = colptr->twidth; if (repeat) *repeat = colptr->trepeat; } return(*status); } /*--------------------------------------------------------------------------*/ int ffeqty( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - column number */ int *typecode, /* O - datatype code (21 = short, etc) */ long *repeat, /* O - repeat count of field */ long *width, /* O - if ASCII, width of field or unit string */ int *status) /* IO - error status */ /* Get the 'equivalent' table column type. This routine is similar to the ffgtcl routine (which returns the physical datatype of the column, as stored in the FITS file) except that if the TSCALn and TZEROn keywords are defined for the column, then it returns the 'equivalent' datatype. Thus, if the column is defined as '1I' (short integer) this routine may return the type as 'TUSHORT' or as 'TFLOAT' depending on the TSCALn and TZEROn values. Returns the datatype code of the column, as well as the vector repeat count and (if it is an ASCII character column) the width of the field or a unit string within the field. This supports the TFORMn = 'rAw' syntax for specifying arrays of substrings, so if TFORMn = '60A12' then repeat = 60 and width = 12. */ { LONGLONG trepeat, twidth; ffeqtyll(fptr, colnum, typecode, &trepeat, &twidth, status); if (repeat) *repeat= (long) trepeat; if (width) *width = (long) twidth; return(*status); } /*--------------------------------------------------------------------------*/ int ffeqtyll( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - column number */ int *typecode, /* O - datatype code (21 = short, etc) */ LONGLONG *repeat, /* O - repeat count of field */ LONGLONG *width, /* O - if ASCII, width of field or unit string */ int *status) /* IO - error status */ /* Get the 'equivalent' table column type. This routine is similar to the ffgtcl routine (which returns the physical datatype of the column, as stored in the FITS file) except that if the TSCALn and TZEROn keywords are defined for the column, then it returns the 'equivalent' datatype. Thus, if the column is defined as '1I' (short integer) this routine may return the type as 'TUSHORT' or as 'TFLOAT' depending on the TSCALn and TZEROn values. Returns the datatype code of the column, as well as the vector repeat count and (if it is an ASCII character column) the width of the field or a unit string within the field. This supports the TFORMn = 'rAw' syntax for specifying arrays of substrings, so if TFORMn = '60A12' then repeat = 60 and width = 12. */ { tcolumn *colptr; int hdutype, decims, tcode, effcode; double tscale, tzero, min_val, max_val; long lngscale, lngzero = 0, tmpwidth; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); if (colnum < 1 || colnum > (fptr->Fptr)->tfield) return(*status = BAD_COL_NUM); colptr = (fptr->Fptr)->tableptr; /* pointer to first column */ colptr += (colnum - 1); /* offset to correct column */ if (ffghdt(fptr, &hdutype, status) > 0) return(*status); if (hdutype == ASCII_TBL) { ffasfm(colptr->tform, typecode, &tmpwidth, &decims, status); *width = tmpwidth; if (repeat) *repeat = 1; } else { if (typecode) *typecode = colptr->tdatatype; if (width) *width = colptr->twidth; if (repeat) *repeat = colptr->trepeat; } /* return if caller is not interested in the typecode value */ if (!typecode) return(*status); /* check if the tscale and tzero keywords are defined, which might change the effective datatype of the column */ tscale = colptr->tscale; tzero = colptr->tzero; if (tscale == 1.0 && tzero == 0.0) /* no scaling */ return(*status); tcode = abs(*typecode); switch (tcode) { case TBYTE: /* binary table 'rB' column */ min_val = 0.; max_val = 255.0; break; case TSHORT: min_val = -32768.0; max_val = 32767.0; break; case TLONG: min_val = -2147483648.0; max_val = 2147483647.0; break; default: /* don't have to deal with other data types */ return(*status); } if (tscale >= 0.) { min_val = tzero + tscale * min_val; max_val = tzero + tscale * max_val; } else { max_val = tzero + tscale * min_val; min_val = tzero + tscale * max_val; } if (tzero < 2147483648.) /* don't exceed range of 32-bit integer */ lngzero = (long) tzero; lngscale = (long) tscale; if ((tzero != 2147483648.) && /* special value that exceeds integer range */ (lngzero != tzero || lngscale != tscale)) { /* not integers? */ /* floating point scaled values; just decide on required precision */ if (tcode == TBYTE || tcode == TSHORT) effcode = TFLOAT; else effcode = TDOUBLE; /* In all the remaining cases, TSCALn and TZEROn are integers, and not equal to 1 and 0, respectively. */ } else if ((min_val == -128.) && (max_val == 127.)) { effcode = TSBYTE; } else if ((min_val >= -32768.0) && (max_val <= 32767.0)) { effcode = TSHORT; } else if ((min_val >= 0.0) && (max_val <= 65535.0)) { effcode = TUSHORT; } else if ((min_val >= -2147483648.0) && (max_val <= 2147483647.0)) { effcode = TLONG; } else if ((min_val >= 0.0) && (max_val < 4294967296.0)) { effcode = TULONG; } else { /* exceeds the range of a 32-bit integer */ effcode = TDOUBLE; } /* return the effective datatype code (negative if variable length col.) */ if (*typecode < 0) /* variable length array column */ *typecode = -effcode; else *typecode = effcode; return(*status); } /*--------------------------------------------------------------------------*/ int ffgncl( fitsfile *fptr, /* I - FITS file pointer */ int *ncols, /* O - number of columns in the table */ int *status) /* IO - error status */ /* Get the number of columns in the table (= TFIELDS keyword) */ { if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); if ((fptr->Fptr)->hdutype == IMAGE_HDU) return(*status = NOT_TABLE); *ncols = (fptr->Fptr)->tfield; return(*status); } /*--------------------------------------------------------------------------*/ int ffgnrw( fitsfile *fptr, /* I - FITS file pointer */ long *nrows, /* O - number of rows in the table */ int *status) /* IO - error status */ /* Get the number of rows in the table (= NAXIS2 keyword) */ { if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); if ((fptr->Fptr)->hdutype == IMAGE_HDU) return(*status = NOT_TABLE); /* the NAXIS2 keyword may not be up to date, so use the structure value */ *nrows = (long) (fptr->Fptr)->numrows; return(*status); } /*--------------------------------------------------------------------------*/ int ffgnrwll( fitsfile *fptr, /* I - FITS file pointer */ LONGLONG *nrows, /* O - number of rows in the table */ int *status) /* IO - error status */ /* Get the number of rows in the table (= NAXIS2 keyword) */ { if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); if ((fptr->Fptr)->hdutype == IMAGE_HDU) return(*status = NOT_TABLE); /* the NAXIS2 keyword may not be up to date, so use the structure value */ *nrows = (fptr->Fptr)->numrows; return(*status); } /*--------------------------------------------------------------------------*/ int ffgacl( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - column number */ char *ttype, /* O - TTYPEn keyword value */ long *tbcol, /* O - TBCOLn keyword value */ char *tunit, /* O - TUNITn keyword value */ char *tform, /* O - TFORMn keyword value */ double *tscal, /* O - TSCALn keyword value */ double *tzero, /* O - TZEROn keyword value */ char *tnull, /* O - TNULLn keyword value */ char *tdisp, /* O - TDISPn keyword value */ int *status) /* IO - error status */ /* get ASCII column keyword values */ { char name[FLEN_KEYWORD], comm[FLEN_COMMENT]; tcolumn *colptr; int tstatus; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); if (colnum < 1 || colnum > (fptr->Fptr)->tfield) return(*status = BAD_COL_NUM); /* get what we can from the column structure */ colptr = (fptr->Fptr)->tableptr; /* pointer to first column */ colptr += (colnum -1); /* offset to correct column */ if (ttype) strcpy(ttype, colptr->ttype); if (tbcol) *tbcol = (long) ((colptr->tbcol) + 1); /* first col is 1, not 0 */ if (tform) strcpy(tform, colptr->tform); if (tscal) *tscal = colptr->tscale; if (tzero) *tzero = colptr->tzero; if (tnull) strcpy(tnull, colptr->strnull); /* read keywords to get additional parameters */ if (tunit) { ffkeyn("TUNIT", colnum, name, status); tstatus = 0; *tunit = '\0'; ffgkys(fptr, name, tunit, comm, &tstatus); } if (tdisp) { ffkeyn("TDISP", colnum, name, status); tstatus = 0; *tdisp = '\0'; ffgkys(fptr, name, tdisp, comm, &tstatus); } return(*status); } /*--------------------------------------------------------------------------*/ int ffgbcl( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - column number */ char *ttype, /* O - TTYPEn keyword value */ char *tunit, /* O - TUNITn keyword value */ char *dtype, /* O - datatype char: I, J, E, D, etc. */ long *repeat, /* O - vector column repeat count */ double *tscal, /* O - TSCALn keyword value */ double *tzero, /* O - TZEROn keyword value */ long *tnull, /* O - TNULLn keyword value integer cols only */ char *tdisp, /* O - TDISPn keyword value */ int *status) /* IO - error status */ /* get BINTABLE column keyword values */ { LONGLONG trepeat, ttnull; if (*status > 0) return(*status); ffgbclll(fptr, colnum, ttype, tunit, dtype, &trepeat, tscal, tzero, &ttnull, tdisp, status); if (repeat) *repeat = (long) trepeat; if (tnull) *tnull = (long) ttnull; return(*status); } /*--------------------------------------------------------------------------*/ int ffgbclll( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - column number */ char *ttype, /* O - TTYPEn keyword value */ char *tunit, /* O - TUNITn keyword value */ char *dtype, /* O - datatype char: I, J, E, D, etc. */ LONGLONG *repeat, /* O - vector column repeat count */ double *tscal, /* O - TSCALn keyword value */ double *tzero, /* O - TZEROn keyword value */ LONGLONG *tnull, /* O - TNULLn keyword value integer cols only */ char *tdisp, /* O - TDISPn keyword value */ int *status) /* IO - error status */ /* get BINTABLE column keyword values */ { char name[FLEN_KEYWORD], comm[FLEN_COMMENT]; tcolumn *colptr; int tstatus; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); if (colnum < 1 || colnum > (fptr->Fptr)->tfield) return(*status = BAD_COL_NUM); /* get what we can from the column structure */ colptr = (fptr->Fptr)->tableptr; /* pointer to first column */ colptr += (colnum -1); /* offset to correct column */ if (ttype) strcpy(ttype, colptr->ttype); if (dtype) { if (colptr->tdatatype < 0) /* add the "P" prefix for */ strcpy(dtype, "P"); /* variable length columns */ else dtype[0] = 0; if (abs(colptr->tdatatype) == TBIT) strcat(dtype, "X"); else if (abs(colptr->tdatatype) == TBYTE) strcat(dtype, "B"); else if (abs(colptr->tdatatype) == TLOGICAL) strcat(dtype, "L"); else if (abs(colptr->tdatatype) == TSTRING) strcat(dtype, "A"); else if (abs(colptr->tdatatype) == TSHORT) strcat(dtype, "I"); else if (abs(colptr->tdatatype) == TLONG) strcat(dtype, "J"); else if (abs(colptr->tdatatype) == TLONGLONG) strcat(dtype, "K"); else if (abs(colptr->tdatatype) == TFLOAT) strcat(dtype, "E"); else if (abs(colptr->tdatatype) == TDOUBLE) strcat(dtype, "D"); else if (abs(colptr->tdatatype) == TCOMPLEX) strcat(dtype, "C"); else if (abs(colptr->tdatatype) == TDBLCOMPLEX) strcat(dtype, "M"); } if (repeat) *repeat = colptr->trepeat; if (tscal) *tscal = colptr->tscale; if (tzero) *tzero = colptr->tzero; if (tnull) *tnull = colptr->tnull; /* read keywords to get additional parameters */ if (tunit) { ffkeyn("TUNIT", colnum, name, status); tstatus = 0; *tunit = '\0'; ffgkys(fptr, name, tunit, comm, &tstatus); } if (tdisp) { ffkeyn("TDISP", colnum, name, status); tstatus = 0; *tdisp = '\0'; ffgkys(fptr, name, tdisp, comm, &tstatus); } return(*status); } /*--------------------------------------------------------------------------*/ int ffghdn(fitsfile *fptr, /* I - FITS file pointer */ int *chdunum) /* O - number of the CHDU; 1 = primary array */ /* Return the number of the Current HDU in the FITS file. The primary array is HDU number 1. Note that this is one of the few cfitsio routines that does not return the error status value as the value of the function. */ { *chdunum = (fptr->HDUposition) + 1; return(*chdunum); } /*--------------------------------------------------------------------------*/ int ffghadll(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG *headstart, /* O - byte offset to beginning of CHDU */ LONGLONG *datastart, /* O - byte offset to beginning of next HDU */ LONGLONG *dataend, /* O - byte offset to beginning of next HDU */ int *status) /* IO - error status */ /* Return the address (= byte offset) in the FITS file to the beginning of the current HDU, the beginning of the data unit, and the end of the data unit. */ { if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) { if (ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status) > 0) return(*status); } else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) { if (ffrdef(fptr, status) > 0) /* rescan header */ return(*status); } if (headstart) *headstart = (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu]; if (datastart) *datastart = (fptr->Fptr)->datastart; if (dataend) *dataend = (fptr->Fptr)->headstart[((fptr->Fptr)->curhdu) + 1]; return(*status); } /*--------------------------------------------------------------------------*/ int ffghof(fitsfile *fptr, /* I - FITS file pointer */ OFF_T *headstart, /* O - byte offset to beginning of CHDU */ OFF_T *datastart, /* O - byte offset to beginning of next HDU */ OFF_T *dataend, /* O - byte offset to beginning of next HDU */ int *status) /* IO - error status */ /* Return the address (= byte offset) in the FITS file to the beginning of the current HDU, the beginning of the data unit, and the end of the data unit. */ { if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) { if (ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status) > 0) return(*status); } else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) { if (ffrdef(fptr, status) > 0) /* rescan header */ return(*status); } if (headstart) *headstart = (OFF_T) (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu]; if (datastart) *datastart = (OFF_T) (fptr->Fptr)->datastart; if (dataend) *dataend = (OFF_T) (fptr->Fptr)->headstart[((fptr->Fptr)->curhdu) + 1]; return(*status); } /*--------------------------------------------------------------------------*/ int ffghad(fitsfile *fptr, /* I - FITS file pointer */ long *headstart, /* O - byte offset to beginning of CHDU */ long *datastart, /* O - byte offset to beginning of next HDU */ long *dataend, /* O - byte offset to beginning of next HDU */ int *status) /* IO - error status */ /* Return the address (= byte offset) in the FITS file to the beginning of the current HDU, the beginning of the data unit, and the end of the data unit. */ { LONGLONG shead, sdata, edata; if (*status > 0) return(*status); ffghadll(fptr, &shead, &sdata, &edata, status); if (headstart) { if (shead > LONG_MAX) *status = NUM_OVERFLOW; else *headstart = (long) shead; } if (datastart) { if (sdata > LONG_MAX) *status = NUM_OVERFLOW; else *datastart = (long) sdata; } if (dataend) { if (edata > LONG_MAX) *status = NUM_OVERFLOW; else *dataend = (long) edata; } return(*status); } /*--------------------------------------------------------------------------*/ int ffrhdu(fitsfile *fptr, /* I - FITS file pointer */ int *hdutype, /* O - type of HDU */ int *status) /* IO - error status */ /* read the required keywords of the CHDU and initialize the corresponding structure elements that describe the format of the HDU */ { int ii, tstatus; char card[FLEN_CARD]; char name[FLEN_KEYWORD], value[FLEN_VALUE], comm[FLEN_COMMENT]; char xname[FLEN_VALUE], *xtension, urltype[20]; if (*status > 0) return(*status); if (ffgrec(fptr, 1, card, status) > 0 ) /* get the 80-byte card */ { ffpmsg("Cannot read first keyword in header (ffrhdu)."); return(*status); } strncpy(name,card,8); /* first 8 characters = the keyword name */ name[8] = '\0'; for (ii=7; ii >= 0; ii--) /* replace trailing blanks with nulls */ { if (name[ii] == ' ') name[ii] = '\0'; else break; } if (ffpsvc(card, value, comm, status) > 0) /* parse value and comment */ { ffpmsg("Cannot read value of first keyword in header (ffrhdu):"); ffpmsg(card); return(*status); } if (!strcmp(name, "SIMPLE")) /* this is the primary array */ { ffpinit(fptr, status); /* initialize the primary array */ if (hdutype != NULL) *hdutype = 0; } else if (!strcmp(name, "XTENSION")) /* this is an XTENSION keyword */ { if (ffc2s(value, xname, status) > 0) /* get the value string */ { ffpmsg("Bad value string for XTENSION keyword:"); ffpmsg(value); return(*status); } xtension = xname; while (*xtension == ' ') /* ignore any leading spaces in name */ xtension++; if (!strcmp(xtension, "TABLE")) { ffainit(fptr, status); /* initialize the ASCII table */ if (hdutype != NULL) *hdutype = 1; } else if (!strcmp(xtension, "BINTABLE") || !strcmp(xtension, "A3DTABLE") || !strcmp(xtension, "3DTABLE") ) { ffbinit(fptr, status); /* initialize the binary table */ if (hdutype != NULL) *hdutype = 2; } else { tstatus = 0; ffpinit(fptr, &tstatus); /* probably an IMAGE extension */ if (tstatus == UNKNOWN_EXT && hdutype != NULL) *hdutype = -1; /* don't recognize this extension type */ else { *status = tstatus; if (hdutype != NULL) *hdutype = 0; } } } else /* not the start of a new extension */ { if (card[0] == 0 || card[0] == 10) /* some editors append this character to EOF */ { *status = END_OF_FILE; } else { *status = UNKNOWN_REC; /* found unknown type of record */ ffpmsg ("Extension doesn't start with SIMPLE or XTENSION keyword. (ffrhdu)"); ffpmsg(card); } } /* compare the starting position of the next HDU (if any) with the size */ /* of the whole file to see if this is the last HDU in the file */ if ((fptr->Fptr)->headstart[ (fptr->Fptr)->curhdu + 1] < (fptr->Fptr)->logfilesize ) { (fptr->Fptr)->lasthdu = 0; /* no, not the last HDU */ } else { (fptr->Fptr)->lasthdu = 1; /* yes, this is the last HDU */ /* special code for mem:// type files (FITS file in memory) */ /* Allocate enough memory to hold the entire HDU. */ /* Without this code, CFITSIO would repeatedly realloc memory */ /* to incrementally increase the size of the file by 2880 bytes */ /* at a time, until it reached the final size */ ffurlt(fptr, urltype, status); if (!strcmp(urltype,"mem://") || !strcmp(urltype,"memkeep://")) { fftrun(fptr, (fptr->Fptr)->headstart[ (fptr->Fptr)->curhdu + 1], status); } } return(*status); } /*--------------------------------------------------------------------------*/ int ffpinit(fitsfile *fptr, /* I - FITS file pointer */ int *status) /* IO - error status */ /* initialize the parameters defining the structure of the primary array or an Image extension */ { int groups, tstatus, simple, bitpix, naxis, extend, nspace; int ttype = 0, bytlen = 0, ii, ntilebins; long pcount, gcount; LONGLONG naxes[999], npix, blank; double bscale, bzero; char comm[FLEN_COMMENT]; tcolumn *colptr; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); (fptr->Fptr)->hdutype = IMAGE_HDU; /* primary array or IMAGE extension */ (fptr->Fptr)->headend = (fptr->Fptr)->logfilesize; /* set max size */ groups = 0; tstatus = *status; /* get all the descriptive info about this HDU */ ffgphd(fptr, 999, &simple, &bitpix, &naxis, naxes, &pcount, &gcount, &extend, &bscale, &bzero, &blank, &nspace, status); if (*status == NOT_IMAGE) *status = tstatus; /* ignore 'unknown extension type' error */ else if (*status > 0) return(*status); /* the logical end of the header is 80 bytes before the current position, minus any trailing blank keywords just before the END keyword. */ (fptr->Fptr)->headend = (fptr->Fptr)->nextkey - (80 * (nspace + 1)); /* the data unit begins at the beginning of the next logical block */ (fptr->Fptr)->datastart = (((fptr->Fptr)->nextkey - 80) / 2880 + 1) * 2880; if (naxis > 0 && naxes[0] == 0) /* test for 'random groups' */ { tstatus = 0; ffmaky(fptr, 2, status); /* reset to beginning of header */ if (ffgkyl(fptr, "GROUPS", &groups, comm, &tstatus)) groups = 0; /* GROUPS keyword not found */ } if (bitpix == BYTE_IMG) /* test bitpix and set the datatype code */ { ttype=TBYTE; bytlen=1; } else if (bitpix == SHORT_IMG) { ttype=TSHORT; bytlen=2; } else if (bitpix == LONG_IMG) { ttype=TLONG; bytlen=4; } else if (bitpix == LONGLONG_IMG) { ttype=TLONGLONG; bytlen=8; } else if (bitpix == FLOAT_IMG) { ttype=TFLOAT; bytlen=4; } else if (bitpix == DOUBLE_IMG) { ttype=TDOUBLE; bytlen=8; } /* calculate the size of the primary array */ (fptr->Fptr)->imgdim = naxis; if (naxis == 0) { npix = 0; } else { if (groups) { npix = 1; /* NAXIS1 = 0 is a special flag for 'random groups' */ } else { npix = naxes[0]; } (fptr->Fptr)->imgnaxis[0] = naxes[0]; for (ii=1; ii < naxis; ii++) { npix = npix*naxes[ii]; /* calc number of pixels in the array */ (fptr->Fptr)->imgnaxis[ii] = naxes[ii]; } } /* now we know everything about the array; just fill in the parameters: the next HDU begins in the next logical block after the data */ (fptr->Fptr)->headstart[ (fptr->Fptr)->curhdu + 1] = (fptr->Fptr)->datastart + ( ((LONGLONG) pcount + npix) * bytlen * gcount + 2879) / 2880 * 2880; /* initialize the fictitious heap starting address (immediately following the array data) and a zero length heap. This is used to find the end of the data when checking the fill values in the last block. */ (fptr->Fptr)->heapstart = (npix + pcount) * bytlen * gcount; (fptr->Fptr)->heapsize = 0; (fptr->Fptr)->compressimg = 0; /* this is not a compressed image */ if (naxis == 0) { (fptr->Fptr)->rowlength = 0; /* rows have zero length */ (fptr->Fptr)->tfield = 0; /* table has no fields */ /* free the tile-compressed image cache, if it exists */ if ((fptr->Fptr)->tilerow) { ntilebins = (((fptr->Fptr)->znaxis[0] - 1) / ((fptr->Fptr)->tilesize[0])) + 1; for (ii = 0; ii < ntilebins; ii++) { if ((fptr->Fptr)->tiledata[ii]) { free((fptr->Fptr)->tiledata[ii]); } if ((fptr->Fptr)->tilenullarray[ii]) { free((fptr->Fptr)->tilenullarray[ii]); } } free((fptr->Fptr)->tileanynull); free((fptr->Fptr)->tiletype); free((fptr->Fptr)->tiledatasize); free((fptr->Fptr)->tilenullarray); free((fptr->Fptr)->tiledata); free((fptr->Fptr)->tilerow); (fptr->Fptr)->tileanynull = 0; (fptr->Fptr)->tiletype = 0; (fptr->Fptr)->tiledatasize = 0; (fptr->Fptr)->tilenullarray = 0; (fptr->Fptr)->tiledata = 0; (fptr->Fptr)->tilerow = 0; } if ((fptr->Fptr)->tableptr) free((fptr->Fptr)->tableptr); /* free memory for the old CHDU */ (fptr->Fptr)->tableptr = 0; /* set a null table structure pointer */ (fptr->Fptr)->numrows = 0; (fptr->Fptr)->origrows = 0; } else { /* The primary array is actually interpreted as a binary table. There are two columns: the first column contains the group parameters if any. The second column contains the primary array of data as a single vector column element. In the case of 'random grouped' format, each group is stored in a separate row of the table. */ /* the number of rows is equal to the number of groups */ (fptr->Fptr)->numrows = gcount; (fptr->Fptr)->origrows = gcount; (fptr->Fptr)->rowlength = (npix + pcount) * bytlen; /* total size */ (fptr->Fptr)->tfield = 2; /* 2 fields: group params and the image */ /* free the tile-compressed image cache, if it exists */ if ((fptr->Fptr)->tilerow) { ntilebins = (((fptr->Fptr)->znaxis[0] - 1) / ((fptr->Fptr)->tilesize[0])) + 1; for (ii = 0; ii < ntilebins; ii++) { if ((fptr->Fptr)->tiledata[ii]) { free((fptr->Fptr)->tiledata[ii]); } if ((fptr->Fptr)->tilenullarray[ii]) { free((fptr->Fptr)->tilenullarray[ii]); } } free((fptr->Fptr)->tileanynull); free((fptr->Fptr)->tiletype); free((fptr->Fptr)->tiledatasize); free((fptr->Fptr)->tilenullarray); free((fptr->Fptr)->tiledata); free((fptr->Fptr)->tilerow); (fptr->Fptr)->tileanynull = 0; (fptr->Fptr)->tiletype = 0; (fptr->Fptr)->tiledatasize = 0; (fptr->Fptr)->tilenullarray = 0; (fptr->Fptr)->tiledata = 0; (fptr->Fptr)->tilerow = 0; } if ((fptr->Fptr)->tableptr) free((fptr->Fptr)->tableptr); /* free memory for the old CHDU */ colptr = (tcolumn *) calloc(2, sizeof(tcolumn) ) ; if (!colptr) { ffpmsg ("malloc failed to get memory for FITS array descriptors (ffpinit)"); (fptr->Fptr)->tableptr = 0; /* set a null table structure pointer */ return(*status = ARRAY_TOO_BIG); } /* copy the table structure address to the fitsfile structure */ (fptr->Fptr)->tableptr = colptr; /* the first column represents the group parameters, if any */ colptr->tbcol = 0; colptr->tdatatype = ttype; colptr->twidth = bytlen; colptr->trepeat = (LONGLONG) pcount; colptr->tscale = 1.; colptr->tzero = 0.; colptr->tnull = blank; colptr++; /* increment pointer to the second column */ /* the second column represents the image array */ colptr->tbcol = pcount * bytlen; /* col starts after the group parms */ colptr->tdatatype = ttype; colptr->twidth = bytlen; colptr->trepeat = npix; colptr->tscale = bscale; colptr->tzero = bzero; colptr->tnull = blank; } /* reset next keyword pointer to the start of the header */ (fptr->Fptr)->nextkey = (fptr->Fptr)->headstart[ (fptr->Fptr)->curhdu ]; return(*status); } /*--------------------------------------------------------------------------*/ int ffainit(fitsfile *fptr, /* I - FITS file pointer */ int *status) /* IO - error status */ { /* initialize the parameters defining the structure of an ASCII table */ int ii, nspace, ntilebins; long tfield; LONGLONG pcount, rowlen, nrows, tbcoln; tcolumn *colptr = 0; char name[FLEN_KEYWORD], value[FLEN_VALUE], comm[FLEN_COMMENT]; char message[FLEN_ERRMSG], errmsg[81]; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); (fptr->Fptr)->hdutype = ASCII_TBL; /* set that this is an ASCII table */ (fptr->Fptr)->headend = (fptr->Fptr)->logfilesize; /* set max size */ /* get table parameters and test that the header is a valid: */ if (ffgttb(fptr, &rowlen, &nrows, &pcount, &tfield, status) > 0) return(*status); if (pcount != 0) { ffpmsg("PCOUNT keyword not equal to 0 in ASCII table (ffainit)."); sprintf(errmsg, " PCOUNT = %ld", (long) pcount); ffpmsg(errmsg); return(*status = BAD_PCOUNT); } (fptr->Fptr)->rowlength = rowlen; /* store length of a row */ (fptr->Fptr)->tfield = tfield; /* store number of table fields in row */ /* free the tile-compressed image cache, if it exists */ if ((fptr->Fptr)->tilerow) { ntilebins = (((fptr->Fptr)->znaxis[0] - 1) / ((fptr->Fptr)->tilesize[0])) + 1; for (ii = 0; ii < ntilebins; ii++) { if ((fptr->Fptr)->tiledata[ii]) { free((fptr->Fptr)->tiledata[ii]); } if ((fptr->Fptr)->tilenullarray[ii]) { free((fptr->Fptr)->tilenullarray[ii]); } } free((fptr->Fptr)->tileanynull); free((fptr->Fptr)->tiletype); free((fptr->Fptr)->tiledatasize); free((fptr->Fptr)->tilenullarray); free((fptr->Fptr)->tiledata); free((fptr->Fptr)->tilerow); (fptr->Fptr)->tileanynull = 0; (fptr->Fptr)->tiletype = 0; (fptr->Fptr)->tiledatasize = 0; (fptr->Fptr)->tilenullarray = 0; (fptr->Fptr)->tiledata = 0; (fptr->Fptr)->tilerow = 0; } if ((fptr->Fptr)->tableptr) free((fptr->Fptr)->tableptr); /* free memory for the old CHDU */ /* mem for column structures ; space is initialized = 0 */ if (tfield > 0) { colptr = (tcolumn *) calloc(tfield, sizeof(tcolumn) ); if (!colptr) { ffpmsg ("malloc failed to get memory for FITS table descriptors (ffainit)"); (fptr->Fptr)->tableptr = 0; /* set a null table structure pointer */ return(*status = ARRAY_TOO_BIG); } } /* copy the table structure address to the fitsfile structure */ (fptr->Fptr)->tableptr = colptr; /* initialize the table field parameters */ for (ii = 0; ii < tfield; ii++, colptr++) { colptr->ttype[0] = '\0'; /* null column name */ colptr->tscale = 1.; colptr->tzero = 0.; colptr->strnull[0] = ASCII_NULL_UNDEFINED; /* null value undefined */ colptr->tbcol = -1; /* initialize to illegal value */ colptr->tdatatype = -9999; /* initialize to illegal value */ } /* Initialize the fictitious heap starting address (immediately following the table data) and a zero length heap. This is used to find the end of the table data when checking the fill values in the last block. There is no special data following an ASCII table. */ (fptr->Fptr)->numrows = nrows; (fptr->Fptr)->origrows = nrows; (fptr->Fptr)->heapstart = rowlen * nrows; (fptr->Fptr)->heapsize = 0; (fptr->Fptr)->compressimg = 0; /* this is not a compressed image */ /* now search for the table column keywords and the END keyword */ for (nspace = 0, ii = 8; 1; ii++) /* infinite loop */ { ffgkyn(fptr, ii, name, value, comm, status); /* try to ignore minor syntax errors */ if (*status == NO_QUOTE) { strcat(value, "'"); *status = 0; } else if (*status == BAD_KEYCHAR) { *status = 0; } if (*status == END_OF_FILE) { ffpmsg("END keyword not found in ASCII table header (ffainit)."); return(*status = NO_END); } else if (*status > 0) return(*status); else if (name[0] == 'T') /* keyword starts with 'T' ? */ ffgtbp(fptr, name, value, status); /* test if column keyword */ else if (!FSTRCMP(name, "END")) /* is this the END keyword? */ break; if (!name[0] && !value[0] && !comm[0]) /* a blank keyword? */ nspace++; else nspace = 0; } /* test that all required keywords were found and have legal values */ colptr = (fptr->Fptr)->tableptr; for (ii = 0; ii < tfield; ii++, colptr++) { tbcoln = colptr->tbcol; /* the starting column number (zero based) */ if (colptr->tdatatype == -9999) { ffkeyn("TFORM", ii+1, name, status); /* construct keyword name */ sprintf(message,"Required %s keyword not found (ffainit).", name); ffpmsg(message); return(*status = NO_TFORM); } else if (tbcoln == -1) { ffkeyn("TBCOL", ii+1, name, status); /* construct keyword name */ sprintf(message,"Required %s keyword not found (ffainit).", name); ffpmsg(message); return(*status = NO_TBCOL); } else if ((fptr->Fptr)->rowlength != 0 && (tbcoln < 0 || tbcoln >= (fptr->Fptr)->rowlength ) ) { ffkeyn("TBCOL", ii+1, name, status); /* construct keyword name */ sprintf(message,"Value of %s keyword out of range: %ld (ffainit).", name, (long) tbcoln); ffpmsg(message); return(*status = BAD_TBCOL); } else if ((fptr->Fptr)->rowlength != 0 && tbcoln + colptr->twidth > (fptr->Fptr)->rowlength ) { sprintf(message,"Column %d is too wide to fit in table (ffainit)", ii+1); ffpmsg(message); sprintf(message, " TFORM = %s and NAXIS1 = %ld", colptr->tform, (long) (fptr->Fptr)->rowlength); ffpmsg(message); return(*status = COL_TOO_WIDE); } } /* now we know everything about the table; just fill in the parameters: the 'END' record is 80 bytes before the current position, minus any trailing blank keywords just before the END keyword. */ (fptr->Fptr)->headend = (fptr->Fptr)->nextkey - (80 * (nspace + 1)); /* the data unit begins at the beginning of the next logical block */ (fptr->Fptr)->datastart = (((fptr->Fptr)->nextkey - 80) / 2880 + 1) * 2880; /* the next HDU begins in the next logical block after the data */ (fptr->Fptr)->headstart[ (fptr->Fptr)->curhdu + 1] = (fptr->Fptr)->datastart + ( ((LONGLONG)rowlen * nrows + 2879) / 2880 * 2880 ); /* reset next keyword pointer to the start of the header */ (fptr->Fptr)->nextkey = (fptr->Fptr)->headstart[ (fptr->Fptr)->curhdu ]; return(*status); } /*--------------------------------------------------------------------------*/ int ffbinit(fitsfile *fptr, /* I - FITS file pointer */ int *status) /* IO - error status */ { /* initialize the parameters defining the structure of a binary table */ int ii, nspace, ntilebins; long tfield; LONGLONG pcount, rowlen, nrows, totalwidth; tcolumn *colptr = 0; char name[FLEN_KEYWORD], value[FLEN_VALUE], comm[FLEN_COMMENT]; char message[FLEN_ERRMSG]; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); (fptr->Fptr)->hdutype = BINARY_TBL; /* set that this is a binary table */ (fptr->Fptr)->headend = (fptr->Fptr)->logfilesize; /* set max size */ /* get table parameters and test that the header is valid: */ if (ffgttb(fptr, &rowlen, &nrows, &pcount, &tfield, status) > 0) return(*status); (fptr->Fptr)->rowlength = rowlen; /* store length of a row */ (fptr->Fptr)->tfield = tfield; /* store number of table fields in row */ /* free the tile-compressed image cache, if it exists */ if ((fptr->Fptr)->tilerow) { ntilebins = (((fptr->Fptr)->znaxis[0] - 1) / ((fptr->Fptr)->tilesize[0])) + 1; for (ii = 0; ii < ntilebins; ii++) { if ((fptr->Fptr)->tiledata[ii]) { free((fptr->Fptr)->tiledata[ii]); } if ((fptr->Fptr)->tilenullarray[ii]) { free((fptr->Fptr)->tilenullarray[ii]); } } free((fptr->Fptr)->tileanynull); free((fptr->Fptr)->tiletype); free((fptr->Fptr)->tiledatasize); free((fptr->Fptr)->tilenullarray); free((fptr->Fptr)->tiledata); free((fptr->Fptr)->tilerow); (fptr->Fptr)->tileanynull = 0; (fptr->Fptr)->tiletype = 0; (fptr->Fptr)->tiledatasize = 0; (fptr->Fptr)->tilenullarray = 0; (fptr->Fptr)->tiledata = 0; (fptr->Fptr)->tilerow = 0; } if ((fptr->Fptr)->tableptr) free((fptr->Fptr)->tableptr); /* free memory for the old CHDU */ /* mem for column structures ; space is initialized = 0 */ if (tfield > 0) { colptr = (tcolumn *) calloc(tfield, sizeof(tcolumn) ); if (!colptr) { ffpmsg ("malloc failed to get memory for FITS table descriptors (ffbinit)"); (fptr->Fptr)->tableptr = 0; /* set a null table structure pointer */ return(*status = ARRAY_TOO_BIG); } } /* copy the table structure address to the fitsfile structure */ (fptr->Fptr)->tableptr = colptr; /* initialize the table field parameters */ for (ii = 0; ii < tfield; ii++, colptr++) { colptr->ttype[0] = '\0'; /* null column name */ colptr->tscale = 1.; colptr->tzero = 0.; colptr->tnull = NULL_UNDEFINED; /* (integer) null value undefined */ colptr->tdatatype = -9999; /* initialize to illegal value */ colptr->trepeat = 1; colptr->strnull[0] = '\0'; /* for ASCII string columns (TFORM = rA) */ } /* Initialize the heap starting address (immediately following the table data) and the size of the heap. This is used to find the end of the table data when checking the fill values in the last block. */ (fptr->Fptr)->numrows = nrows; (fptr->Fptr)->origrows = nrows; (fptr->Fptr)->heapstart = rowlen * nrows; (fptr->Fptr)->heapsize = pcount; (fptr->Fptr)->compressimg = 0; /* initialize as not a compressed image */ /* now search for the table column keywords and the END keyword */ for (nspace = 0, ii = 8; 1; ii++) /* infinite loop */ { ffgkyn(fptr, ii, name, value, comm, status); /* try to ignore minor syntax errors */ if (*status == NO_QUOTE) { strcat(value, "'"); *status = 0; } else if (*status == BAD_KEYCHAR) { *status = 0; } if (*status == END_OF_FILE) { ffpmsg("END keyword not found in binary table header (ffbinit)."); return(*status = NO_END); } else if (*status > 0) return(*status); else if (name[0] == 'T') /* keyword starts with 'T' ? */ ffgtbp(fptr, name, value, status); /* test if column keyword */ else if (!FSTRCMP(name, "ZIMAGE")) { if (value[0] == 'T') (fptr->Fptr)->compressimg = 1; /* this is a compressed image */ } else if (!FSTRCMP(name, "END")) /* is this the END keyword? */ break; if (!name[0] && !value[0] && !comm[0]) /* a blank keyword? */ nspace++; else nspace = 0; /* reset number of consecutive spaces before END */ } /* test that all the required keywords were found and have legal values */ colptr = (fptr->Fptr)->tableptr; /* set pointer to first column */ for (ii = 0; ii < tfield; ii++, colptr++) { if (colptr->tdatatype == -9999) { ffkeyn("TFORM", ii+1, name, status); /* construct keyword name */ sprintf(message,"Required %s keyword not found (ffbinit).", name); ffpmsg(message); return(*status = NO_TFORM); } } /* now we know everything about the table; just fill in the parameters: the 'END' record is 80 bytes before the current position, minus any trailing blank keywords just before the END keyword. */ (fptr->Fptr)->headend = (fptr->Fptr)->nextkey - (80 * (nspace + 1)); /* the data unit begins at the beginning of the next logical block */ (fptr->Fptr)->datastart = (((fptr->Fptr)->nextkey - 80) / 2880 + 1) * 2880; /* the next HDU begins in the next logical block after the data */ (fptr->Fptr)->headstart[ (fptr->Fptr)->curhdu + 1] = (fptr->Fptr)->datastart + ( ((fptr->Fptr)->heapstart + (fptr->Fptr)->heapsize + 2879) / 2880 * 2880 ); /* determine the byte offset to the beginning of each column */ ffgtbc(fptr, &totalwidth, status); if (totalwidth != rowlen) { sprintf(message, "NAXIS1 = %ld is not equal to the sum of column widths: %ld", (long) rowlen, (long) totalwidth); ffpmsg(message); *status = BAD_ROW_WIDTH; } /* reset next keyword pointer to the start of the header */ (fptr->Fptr)->nextkey = (fptr->Fptr)->headstart[ (fptr->Fptr)->curhdu ]; if ( (fptr->Fptr)->compressimg == 1) /* Is this a compressed image */ imcomp_get_compressed_image_par(fptr, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgabc(int tfields, /* I - number of columns in the table */ char **tform, /* I - value of TFORMn keyword for each column */ int space, /* I - number of spaces to leave between cols */ long *rowlen, /* O - total width of a table row */ long *tbcol, /* O - starting byte in row for each column */ int *status) /* IO - error status */ /* calculate the starting byte offset of each column of an ASCII table and the total length of a row, in bytes. The input space value determines how many blank spaces to leave between each column (1 is recommended). */ { int ii, datacode, decims; long width; if (*status > 0) return(*status); *rowlen=0; if (tfields <= 0) return(*status); tbcol[0] = 1; for (ii = 0; ii < tfields; ii++) { tbcol[ii] = *rowlen + 1; /* starting byte in row of column */ ffasfm(tform[ii], &datacode, &width, &decims, status); *rowlen += (width + space); /* total length of row */ } *rowlen -= space; /* don't add space after the last field */ return (*status); } /*--------------------------------------------------------------------------*/ int ffgtbc(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG *totalwidth, /* O - total width of a table row */ int *status) /* IO - error status */ { /* calculate the starting byte offset of each column of a binary table. Use the values of the datatype code and repeat counts in the column structure. Return the total length of a row, in bytes. */ int tfields, ii; LONGLONG nbytes; tcolumn *colptr; char message[FLEN_ERRMSG], *cptr; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); tfields = (fptr->Fptr)->tfield; colptr = (fptr->Fptr)->tableptr; /* point to first column structure */ *totalwidth = 0; for (ii = 0; ii < tfields; ii++, colptr++) { colptr->tbcol = *totalwidth; /* byte offset in row to this column */ if (colptr->tdatatype == TSTRING) { nbytes = colptr->trepeat; /* one byte per char */ } else if (colptr->tdatatype == TBIT) { nbytes = ( colptr->trepeat + 7) / 8; } else if (colptr->tdatatype > 0) { nbytes = colptr->trepeat * (colptr->tdatatype / 10); } else { cptr = colptr->tform; while (isdigit(*cptr)) cptr++; if (*cptr == 'P') /* this is a 'P' variable length descriptor (neg. tdatatype) */ nbytes = colptr->trepeat * 8; else if (*cptr == 'Q') /* this is a 'Q' variable length descriptor (neg. tdatatype) */ nbytes = colptr->trepeat * 16; else { sprintf(message, "unknown binary table column type: %s", colptr->tform); ffpmsg(message); *status = BAD_TFORM; return(*status); } } *totalwidth = *totalwidth + nbytes; } return(*status); } /*--------------------------------------------------------------------------*/ int ffgtbp(fitsfile *fptr, /* I - FITS file pointer */ char *name, /* I - name of the keyword */ char *value, /* I - value string of the keyword */ int *status) /* IO - error status */ { /* Get TaBle Parameter. The input keyword name begins with the letter T. Test if the keyword is one of the table column definition keywords of an ASCII or binary table. If so, decode it and update the value in the structure. */ int tstatus, datacode, decimals; long width, repeat, nfield, ivalue; LONGLONG jjvalue; double dvalue; char tvalue[FLEN_VALUE], *loc; char message[FLEN_ERRMSG]; tcolumn *colptr; if (*status > 0) return(*status); tstatus = 0; /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); if(!FSTRNCMP(name + 1, "TYPE", 4) ) { /* get the index number */ if( ffc2ii(name + 5, &nfield, &tstatus) > 0) /* read index no. */ return(*status); /* must not be an indexed keyword */ if (nfield < 1 || nfield > (fptr->Fptr)->tfield ) /* out of range */ return(*status); colptr = (fptr->Fptr)->tableptr; /* get pointer to columns */ colptr = colptr + nfield - 1; /* point to the correct column */ if (ffc2s(value, tvalue, &tstatus) > 0) /* remove quotes */ return(*status); strcpy(colptr->ttype, tvalue); /* copy col name to structure */ } else if(!FSTRNCMP(name + 1, "FORM", 4) ) { /* get the index number */ if( ffc2ii(name + 5, &nfield, &tstatus) > 0) /* read index no. */ return(*status); /* must not be an indexed keyword */ if (nfield < 1 || nfield > (fptr->Fptr)->tfield ) /* out of range */ return(*status); colptr = (fptr->Fptr)->tableptr; /* get pointer to columns */ colptr = colptr + nfield - 1; /* point to the correct column */ if (ffc2s(value, tvalue, &tstatus) > 0) /* remove quotes */ return(*status); strncpy(colptr->tform, tvalue, 9); /* copy TFORM to structure */ colptr->tform[9] = '\0'; /* make sure it is terminated */ if ((fptr->Fptr)->hdutype == ASCII_TBL) /* ASCII table */ { if (ffasfm(tvalue, &datacode, &width, &decimals, status) > 0) return(*status); /* bad format code */ colptr->tdatatype = TSTRING; /* store datatype code */ colptr->trepeat = 1; /* field repeat count == 1 */ colptr->twidth = width; /* the width of the field, in bytes */ } else /* binary table */ { if (ffbnfm(tvalue, &datacode, &repeat, &width, status) > 0) return(*status); /* bad format code */ colptr->tdatatype = datacode; /* store datatype code */ colptr->trepeat = (LONGLONG) repeat; /* field repeat count */ /* Don't overwrite the unit string width if it was previously */ /* set by a TDIMn keyword and has a legal value */ if (datacode == TSTRING) { if (colptr->twidth == 0 || colptr->twidth > repeat) colptr->twidth = width; /* width of a unit string */ } else { colptr->twidth = width; /* width of a unit value in chars */ } } } else if(!FSTRNCMP(name + 1, "BCOL", 4) ) { /* get the index number */ if( ffc2ii(name + 5, &nfield, &tstatus) > 0) /* read index no. */ return(*status); /* must not be an indexed keyword */ if (nfield < 1 || nfield > (fptr->Fptr)->tfield ) /* out of range */ return(*status); colptr = (fptr->Fptr)->tableptr; /* get pointer to columns */ colptr = colptr + nfield - 1; /* point to the correct column */ if ((fptr->Fptr)->hdutype == BINARY_TBL) return(*status); /* binary tables don't have TBCOL keywords */ if (ffc2ii(value, &ivalue, status) > 0) { sprintf(message, "Error reading value of %s as an integer: %s", name, value); ffpmsg(message); return(*status); } colptr->tbcol = ivalue - 1; /* convert to zero base */ } else if(!FSTRNCMP(name + 1, "SCAL", 4) ) { /* get the index number */ if( ffc2ii(name + 5, &nfield, &tstatus) > 0) /* read index no. */ return(*status); /* must not be an indexed keyword */ if (nfield < 1 || nfield > (fptr->Fptr)->tfield ) /* out of range */ return(*status); colptr = (fptr->Fptr)->tableptr; /* get pointer to columns */ colptr = colptr + nfield - 1; /* point to the correct column */ if (ffc2dd(value, &dvalue, &tstatus) > 0) { sprintf(message, "Error reading value of %s as a double: %s", name, value); ffpmsg(message); /* ignore this error, so don't return error status */ return(*status); } colptr->tscale = dvalue; } else if(!FSTRNCMP(name + 1, "ZERO", 4) ) { /* get the index number */ if( ffc2ii(name + 5, &nfield, &tstatus) > 0) /* read index no. */ return(*status); /* must not be an indexed keyword */ if (nfield < 1 || nfield > (fptr->Fptr)->tfield ) /* out of range */ return(*status); colptr = (fptr->Fptr)->tableptr; /* get pointer to columns */ colptr = colptr + nfield - 1; /* point to the correct column */ if (ffc2dd(value, &dvalue, &tstatus) > 0) { sprintf(message, "Error reading value of %s as a double: %s", name, value); ffpmsg(message); /* ignore this error, so don't return error status */ return(*status); } colptr->tzero = dvalue; } else if(!FSTRNCMP(name + 1, "NULL", 4) ) { /* get the index number */ if( ffc2ii(name + 5, &nfield, &tstatus) > 0) /* read index no. */ return(*status); /* must not be an indexed keyword */ if (nfield < 1 || nfield > (fptr->Fptr)->tfield ) /* out of range */ return(*status); colptr = (fptr->Fptr)->tableptr; /* get pointer to columns */ colptr = colptr + nfield - 1; /* point to the correct column */ if ((fptr->Fptr)->hdutype == ASCII_TBL) /* ASCII table */ { if (ffc2s(value, tvalue, &tstatus) > 0) /* remove quotes */ return(*status); strncpy(colptr->strnull, tvalue, 17); /* copy TNULL string */ colptr->strnull[17] = '\0'; /* terminate the strnull field */ } else /* binary table */ { if (ffc2jj(value, &jjvalue, &tstatus) > 0) { sprintf(message, "Error reading value of %s as an integer: %s", name, value); ffpmsg(message); /* ignore this error, so don't return error status */ return(*status); } colptr->tnull = jjvalue; /* null value for integer column */ } } else if(!FSTRNCMP(name + 1, "DIM", 3) ) { if ((fptr->Fptr)->hdutype == ASCII_TBL) /* ASCII table */ return(*status); /* ASCII tables don't support TDIMn keyword */ /* get the index number */ if( ffc2ii(name + 4, &nfield, &tstatus) > 0) /* read index no. */ return(*status); /* must not be an indexed keyword */ if (nfield < 1 || nfield > (fptr->Fptr)->tfield ) /* out of range */ return(*status); colptr = (fptr->Fptr)->tableptr; /* get pointer to columns */ colptr = colptr + nfield - 1; /* point to the correct column */ /* uninitialized columns have tdatatype set = -9999 */ if (colptr->tdatatype != -9999 && colptr->tdatatype != TSTRING) return(*status); /* this is not an ASCII string column */ loc = strchr(value, '(' ); /* find the opening parenthesis */ if (!loc) return(*status); /* not a proper TDIM keyword */ loc++; width = strtol(loc, &loc, 10); /* read size of first dimension */ if (colptr->trepeat != 1 && colptr->trepeat < width) return(*status); /* string length is greater than column width */ colptr->twidth = width; /* set width of a unit string in chars */ } else if (!FSTRNCMP(name + 1, "HEAP", 4) ) { if ((fptr->Fptr)->hdutype == ASCII_TBL) /* ASCII table */ return(*status); /* ASCII tables don't have a heap */ if (ffc2jj(value, &jjvalue, &tstatus) > 0) { sprintf(message, "Error reading value of %s as an integer: %s", name, value); ffpmsg(message); /* ignore this error, so don't return error status */ return(*status); } (fptr->Fptr)->heapstart = jjvalue; /* starting byte of the heap */ return(*status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffgcprll( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - column number (1 = 1st column of table) */ LONGLONG firstrow, /* I - first row (1 = 1st row of table) */ LONGLONG firstelem, /* I - first element within vector (1 = 1st) */ LONGLONG nelem, /* I - number of elements to read or write */ int writemode, /* I - = 1 if writing data, = 0 if reading data */ /* If = 2, then writing data, but don't modify */ /* the returned values of repeat and incre. */ /* If = -1, then reading data in reverse */ /* direction. */ double *scale, /* O - FITS scaling factor (TSCALn keyword value) */ double *zero, /* O - FITS scaling zero pt (TZEROn keyword value) */ char *tform, /* O - ASCII column format: value of TFORMn keyword */ long *twidth, /* O - width of ASCII column (characters) */ int *tcode, /* O - column datatype code: I*4=41, R*4=42, etc */ int *maxelem, /* O - max number of elements that fit in buffer */ LONGLONG *startpos,/* O - offset in file to starting row & column */ LONGLONG *elemnum, /* O - starting element number ( 0 = 1st element) */ long *incre, /* O - byte offset between elements within a row */ LONGLONG *repeat, /* O - number of elements in a row (vector column) */ LONGLONG *rowlen, /* O - length of a row, in bytes */ int *hdutype, /* O - HDU type: 0, 1, 2 = primary, table, bintable */ LONGLONG *tnull, /* O - null value for integer columns */ char *snull, /* O - null value for ASCII table columns */ int *status) /* IO - error status */ /* Get Column PaRameters, and test starting row and element numbers for validity. This is a workhorse routine that is call by nearly every other routine that reads or writes to FITS files. */ { int nulpos, rangecheck = 1, tstatus = 0; LONGLONG datastart, endpos; long nblock; LONGLONG heapoffset, lrepeat, endrow, nrows, tbcol; char message[81]; tcolumn *colptr; if (fptr->HDUposition != (fptr->Fptr)->curhdu) { /* reset position to the correct HDU if necessary */ ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) { /* rescan header if data structure is undefined */ if ( ffrdef(fptr, status) > 0) return(*status); } else if (writemode > 0) { /* Only terminate the header with the END card if */ /* writing to the stdout stream (don't have random access). */ /* Initialize STREAM_DRIVER to be the device number for */ /* writing FITS files directly out to the stdout stream. */ /* This only needs to be done once and is thread safe. */ if (STREAM_DRIVER <= 0 || STREAM_DRIVER > 40) { urltype2driver("stream://", &STREAM_DRIVER); } if (((fptr->Fptr)->driver == STREAM_DRIVER)) { if ((fptr->Fptr)->ENDpos != maxvalue((fptr->Fptr)->headend , (fptr->Fptr)->datastart -2880)) { ffwend(fptr, status); } } } /* Do sanity check of input parameters */ if (firstrow < 1) { if ((fptr->Fptr)->hdutype == IMAGE_HDU) /* Primary Array or IMAGE */ { sprintf(message, "Image group number is less than 1: %.0f", (double) firstrow); ffpmsg(message); return(*status = BAD_ROW_NUM); } else { sprintf(message, "Starting row number is less than 1: %.0f", (double) firstrow); ffpmsg(message); return(*status = BAD_ROW_NUM); } } else if ((fptr->Fptr)->hdutype != ASCII_TBL && firstelem < 1) { sprintf(message, "Starting element number less than 1: %ld", (long) firstelem); ffpmsg(message); return(*status = BAD_ELEM_NUM); } else if (nelem < 0) { sprintf(message, "Tried to read or write less than 0 elements: %.0f", (double) nelem); ffpmsg(message); return(*status = NEG_BYTES); } else if (colnum < 1 || colnum > (fptr->Fptr)->tfield) { sprintf(message, "Specified column number is out of range: %d", colnum); ffpmsg(message); sprintf(message, " There are %d columns in this table.", (fptr->Fptr)->tfield ); ffpmsg(message); return(*status = BAD_COL_NUM); } /* copy relevant parameters from the structure */ *hdutype = (fptr->Fptr)->hdutype; /* image, ASCII table, or BINTABLE */ *rowlen = (fptr->Fptr)->rowlength; /* width of the table, in bytes */ datastart = (fptr->Fptr)->datastart; /* offset in file to start of table */ colptr = (fptr->Fptr)->tableptr; /* point to first column */ colptr += (colnum - 1); /* offset to correct column structure */ *scale = colptr->tscale; /* value scaling factor; default = 1.0 */ *zero = colptr->tzero; /* value scaling zeropoint; default = 0.0 */ *tnull = colptr->tnull; /* null value for integer columns */ tbcol = colptr->tbcol; /* offset to start of column within row */ *twidth = colptr->twidth; /* width of a single datum, in bytes */ *incre = colptr->twidth; /* increment between datums, in bytes */ *tcode = colptr->tdatatype; *repeat = colptr->trepeat; strcpy(tform, colptr->tform); /* value of TFORMn keyword */ strcpy(snull, colptr->strnull); /* null value for ASCII table columns */ if (*hdutype == ASCII_TBL && snull[0] == '\0') { /* In ASCII tables, a null value is equivalent to all spaces */ strcpy(snull, " "); /* maximum of 17 spaces */ nulpos = minvalue(17, *twidth); /* truncate to width of column */ snull[nulpos] = '\0'; } /* Special case: interpret writemode = -1 as reading data, but */ /* don't do error check for exceeding the range of pixels */ if (writemode == -1) { writemode = 0; rangecheck = 0; } /* Special case: interprete 'X' column as 'B' */ if (abs(*tcode) == TBIT) { *tcode = *tcode / TBIT * TBYTE; *repeat = (*repeat + 7) / 8; } /* Special case: support the 'rAw' format in BINTABLEs */ if (*hdutype == BINARY_TBL && *tcode == TSTRING) { *repeat = *repeat / *twidth; /* repeat = # of unit strings in field */ } else if (*hdutype == BINARY_TBL && *tcode == -TSTRING) { /* variable length string */ *incre = 1; *twidth = (long) nelem; } if (*hdutype == ASCII_TBL) *elemnum = 0; /* ASCII tables don't have vector elements */ else *elemnum = firstelem - 1; /* interprete complex and double complex as pairs of floats or doubles */ if (abs(*tcode) >= TCOMPLEX) { if (*tcode > 0) *tcode = (*tcode + 1) / 2; else *tcode = (*tcode - 1) / 2; *repeat = *repeat * 2; *twidth = *twidth / 2; *incre = *incre / 2; } /* calculate no. of pixels that fit in buffer */ /* allow for case where floats are 8 bytes long */ if (abs(*tcode) == TFLOAT) *maxelem = DBUFFSIZE / sizeof(float); else if (abs(*tcode) == TDOUBLE) *maxelem = DBUFFSIZE / sizeof(double); else if (abs(*tcode) == TSTRING) { *maxelem = (DBUFFSIZE - 1)/ *twidth; /* leave room for final \0 */ if (*maxelem == 0) { sprintf(message, "ASCII string column is too wide: %ld; max supported width is %d", *twidth, DBUFFSIZE - 1); ffpmsg(message); return(*status = COL_TOO_WIDE); } } else *maxelem = DBUFFSIZE / *twidth; /* calc starting byte position to 1st element of col */ /* (this does not apply to variable length columns) */ *startpos = datastart + ((LONGLONG)(firstrow - 1) * *rowlen) + tbcol; if (*hdutype == IMAGE_HDU && writemode) /* Primary Array or IMAGE */ { /* For primary arrays, set the repeat count greater than the total number of pixels to be written. This prevents an out-of-range error message in cases where the final image array size is not yet known or defined. */ if (*repeat < *elemnum + nelem) *repeat = *elemnum + nelem; } else if (*tcode > 0) /* Fixed length table column */ { if (*elemnum >= *repeat) { sprintf(message, "First element to write is too large: %ld; max allowed value is %ld", (long) ((*elemnum) + 1), (long) *repeat); ffpmsg(message); return(*status = BAD_ELEM_NUM); } /* last row number to be read or written */ endrow = ((*elemnum + nelem - 1) / *repeat) + firstrow; if (writemode) { /* check if we are writing beyond the current end of table */ if ((endrow > (fptr->Fptr)->numrows) && (nelem > 0) ) { /* if there are more HDUs following the current one, or */ /* if there is a data heap, then we must insert space */ /* for the new rows. */ if ( !((fptr->Fptr)->lasthdu) || (fptr->Fptr)->heapsize > 0) { nrows = endrow - ((fptr->Fptr)->numrows); if (ffirow(fptr, (fptr->Fptr)->numrows, nrows, status) > 0) { sprintf(message, "Failed to add space for %.0f new rows in table.", (double) nrows); ffpmsg(message); return(*status); } } else { /* update heap starting address */ (fptr->Fptr)->heapstart += ((LONGLONG)(endrow - (fptr->Fptr)->numrows) * (fptr->Fptr)->rowlength ); (fptr->Fptr)->numrows = endrow; /* update number of rows */ } } } else /* reading from the file */ { if ( endrow > (fptr->Fptr)->numrows && rangecheck) { if (*hdutype == IMAGE_HDU) /* Primary Array or IMAGE */ { if (firstrow > (fptr->Fptr)->numrows) { sprintf(message, "Attempted to read from group %ld of the HDU,", (long) firstrow); ffpmsg(message); sprintf(message, "however the HDU only contains %ld group(s).", (long) ((fptr->Fptr)->numrows) ); ffpmsg(message); } else { ffpmsg("Attempt to read past end of array:"); sprintf(message, " Image has %ld elements;", (long) *repeat); ffpmsg(message); sprintf(message, " Tried to read %ld elements starting at element %ld.", (long) nelem, (long) firstelem); ffpmsg(message); } } else { ffpmsg("Attempt to read past end of table:"); sprintf(message, " Table has %.0f rows with %.0f elements per row;", (double) ((fptr->Fptr)->numrows), (double) *repeat); ffpmsg(message); sprintf(message, " Tried to read %.0f elements starting at row %.0f, element %.0f.", (double) nelem, (double) firstrow, (double) ((*elemnum) + 1)); ffpmsg(message); } return(*status = BAD_ROW_NUM); } } if (*repeat == 1 && nelem > 1 && writemode != 2) { /* When accessing a scalar column, fool the calling routine into thinking that this is a vector column with very big elements. This allows multiple values (up to the maxelem number of elements that will fit in the buffer) to be read or written with a single routine call, which increases the efficiency. If writemode == 2, then the calling program does not want to have this efficiency trick applied. */ if (*rowlen <= LONG_MAX) { *incre = (long) *rowlen; *repeat = nelem; } } } else /* Variable length Binary Table column */ { *tcode *= (-1); if (writemode) /* return next empty heap address for writing */ { *repeat = nelem + *elemnum; /* total no. of elements in the field */ /* first, check if we are overwriting an existing row, and */ /* if so, if the existing space is big enough for the new vector */ if ( firstrow <= (fptr->Fptr)->numrows ) { ffgdesll(fptr, colnum, firstrow, &lrepeat, &heapoffset, &tstatus); if (!tstatus) { if (colptr->tdatatype <= -TCOMPLEX) lrepeat = lrepeat * 2; /* no. of float or double values */ else if (colptr->tdatatype == -TBIT) lrepeat = (lrepeat + 7) / 8; /* convert from bits to bytes */ if (lrepeat >= *repeat) /* enough existing space? */ { *startpos = datastart + heapoffset + (fptr->Fptr)->heapstart; /* write the descriptor into the fixed length part of table */ if (colptr->tdatatype <= -TCOMPLEX) { /* divide repeat count by 2 to get no. of complex values */ ffpdes(fptr, colnum, firstrow, *repeat / 2, heapoffset, status); } else { ffpdes(fptr, colnum, firstrow, *repeat, heapoffset, status); } return(*status); } } } /* Add more rows to the table, if writing beyond the end. */ /* It is necessary to shift the heap down in this case */ if ( firstrow > (fptr->Fptr)->numrows) { nrows = firstrow - ((fptr->Fptr)->numrows); if (ffirow(fptr, (fptr->Fptr)->numrows, nrows, status) > 0) { sprintf(message, "Failed to add space for %.0f new rows in table.", (double) nrows); ffpmsg(message); return(*status); } } /* calculate starting position (for writing new data) in the heap */ *startpos = datastart + (fptr->Fptr)->heapstart + (fptr->Fptr)->heapsize; /* write the descriptor into the fixed length part of table */ if (colptr->tdatatype <= -TCOMPLEX) { /* divide repeat count by 2 to get no. of complex values */ ffpdes(fptr, colnum, firstrow, *repeat / 2, (fptr->Fptr)->heapsize, status); } else { ffpdes(fptr, colnum, firstrow, *repeat, (fptr->Fptr)->heapsize, status); } /* If this is not the last HDU in the file, then check if */ /* extending the heap would overwrite the following header. */ /* If so, then have to insert more blocks. */ if ( !((fptr->Fptr)->lasthdu) ) { endpos = datastart + (fptr->Fptr)->heapstart + (fptr->Fptr)->heapsize + ( *repeat * (*incre)); if (endpos > (fptr->Fptr)->headstart[ (fptr->Fptr)->curhdu + 1]) { /* calc the number of blocks that need to be added */ nblock = (long) (((endpos - 1 - (fptr->Fptr)->headstart[ (fptr->Fptr)->curhdu + 1] ) / 2880) + 1); if (ffiblk(fptr, nblock, 1, status) > 0) /* insert blocks */ { sprintf(message, "Failed to extend the size of the variable length heap by %ld blocks.", nblock); ffpmsg(message); return(*status); } } } /* increment the address to the next empty heap position */ (fptr->Fptr)->heapsize += ( *repeat * (*incre)); } else /* get the read start position in the heap */ { if ( firstrow > (fptr->Fptr)->numrows) { ffpmsg("Attempt to read past end of table"); sprintf(message, " Table has %.0f rows and tried to read row %.0f.", (double) ((fptr->Fptr)->numrows), (double) firstrow); ffpmsg(message); return(*status = BAD_ROW_NUM); } ffgdesll(fptr, colnum, firstrow, &lrepeat, &heapoffset, status); *repeat = lrepeat; if (colptr->tdatatype <= -TCOMPLEX) *repeat = *repeat * 2; /* no. of float or double values */ else if (colptr->tdatatype == -TBIT) *repeat = (*repeat + 7) / 8; /* convert from bits to bytes */ if (*elemnum >= *repeat) { sprintf(message, "Starting element to read in variable length column is too large: %ld", (long) firstelem); ffpmsg(message); sprintf(message, " This row only contains %ld elements", (long) *repeat); ffpmsg(message); return(*status = BAD_ELEM_NUM); } *startpos = datastart + heapoffset + (fptr->Fptr)->heapstart; } } return(*status); } /*---------------------------------------------------------------------------*/ int fftheap(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG *heapsz, /* O - current size of the heap */ LONGLONG *unused, /* O - no. of unused bytes in the heap */ LONGLONG *overlap, /* O - no. of bytes shared by > 1 descriptors */ int *valid, /* O - are all the heap addresses valid? */ int *status) /* IO - error status */ /* Tests the contents of the binary table variable length array heap. Returns the number of bytes that are currently not pointed to by any of the descriptors, and also the number of bytes that are pointed to by more than one descriptor. It returns valid = FALSE if any of the descriptors point to addresses that are out of the bounds of the heap. */ { int jj, typecode, pixsize; long ii, kk, theapsz, nbytes; LONGLONG repeat, offset, tunused = 0, toverlap = 0; char *buffer, message[81]; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if ( fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); /* rescan header to make sure everything is up to date */ else if ( ffrdef(fptr, status) > 0) return(*status); if (valid) *valid = TRUE; if (heapsz) *heapsz = (fptr->Fptr)->heapsize; if (unused) *unused = 0; if (overlap) *overlap = 0; /* return if this is not a binary table HDU or if the heap is empty */ if ( (fptr->Fptr)->hdutype != BINARY_TBL || (fptr->Fptr)->heapsize == 0 ) return(*status); if ((fptr->Fptr)->heapsize > LONG_MAX) { ffpmsg("Heap is too big to test ( > 2**31 bytes). (fftheap)"); return(*status = MEMORY_ALLOCATION); } theapsz = (long) (fptr->Fptr)->heapsize; buffer = calloc(1, theapsz); /* allocate temp space */ if (!buffer ) { sprintf(message,"Failed to allocate buffer to test the heap"); ffpmsg(message); return(*status = MEMORY_ALLOCATION); } /* loop over all cols */ for (jj = 1; jj <= (fptr->Fptr)->tfield && *status <= 0; jj++) { ffgtcl(fptr, jj, &typecode, NULL, NULL, status); if (typecode > 0) continue; /* ignore fixed length columns */ pixsize = -typecode / 10; for (ii = 1; ii <= (fptr->Fptr)->numrows; ii++) { ffgdesll(fptr, jj, ii, &repeat, &offset, status); if (typecode == -TBIT) nbytes = (long) (repeat + 7) / 8; else nbytes = (long) repeat * pixsize; if (offset < 0 || offset + nbytes > theapsz) { if (valid) *valid = FALSE; /* address out of bounds */ sprintf(message, "Descriptor in row %ld, column %d has invalid heap address", ii, jj); ffpmsg(message); } else { for (kk = 0; kk < nbytes; kk++) buffer[kk + offset]++; /* increment every used byte */ } } } for (kk = 0; kk < theapsz; kk++) { if (buffer[kk] == 0) tunused++; else if (buffer[kk] > 1) toverlap++; } if (heapsz) *heapsz = theapsz; if (unused) *unused = tunused; if (overlap) *overlap = toverlap; free(buffer); return(*status); } /*--------------------------------------------------------------------------*/ int ffcmph(fitsfile *fptr, /* I -FITS file pointer */ int *status) /* IO - error status */ /* compress the binary table heap by reordering the contents heap and recovering any unused space */ { fitsfile *tptr; int jj, typecode, pixsize, valid; long ii, buffsize = 10000, nblock, nbytes; LONGLONG unused, overlap; LONGLONG repeat, offset; char *buffer, *tbuff, comm[FLEN_COMMENT]; char message[81]; LONGLONG pcount; LONGLONG readheapstart, writeheapstart, endpos, t1heapsize, t2heapsize; if (*status > 0) return(*status); /* get information about the current heap */ fftheap(fptr, NULL, &unused, &overlap, &valid, status); if (!valid) return(*status = BAD_HEAP_PTR); /* bad heap pointers */ /* return if this is not a binary table HDU or if the heap is OK as is */ if ( (fptr->Fptr)->hdutype != BINARY_TBL || (fptr->Fptr)->heapsize == 0 || (unused == 0 && overlap == 0) || *status > 0 ) return(*status); /* copy the current HDU to a temporary file in memory */ if (ffinit( &tptr, "mem://tempheapfile", status) ) { sprintf(message,"Failed to create temporary file for the heap"); ffpmsg(message); return(*status); } if ( ffcopy(fptr, tptr, 0, status) ) { sprintf(message,"Failed to create copy of the heap"); ffpmsg(message); ffclos(tptr, status); return(*status); } buffer = (char *) malloc(buffsize); /* allocate initial buffer */ if (!buffer) { sprintf(message,"Failed to allocate buffer to copy the heap"); ffpmsg(message); ffclos(tptr, status); return(*status = MEMORY_ALLOCATION); } readheapstart = (tptr->Fptr)->datastart + (tptr->Fptr)->heapstart; writeheapstart = (fptr->Fptr)->datastart + (fptr->Fptr)->heapstart; t1heapsize = (fptr->Fptr)->heapsize; /* save original heap size */ (fptr->Fptr)->heapsize = 0; /* reset heap to zero */ /* loop over all cols */ for (jj = 1; jj <= (fptr->Fptr)->tfield && *status <= 0; jj++) { ffgtcl(tptr, jj, &typecode, NULL, NULL, status); if (typecode > 0) continue; /* ignore fixed length columns */ pixsize = -typecode / 10; /* copy heap data, row by row */ for (ii = 1; ii <= (fptr->Fptr)->numrows; ii++) { ffgdesll(tptr, jj, ii, &repeat, &offset, status); if (typecode == -TBIT) nbytes = (long) (repeat + 7) / 8; else nbytes = (long) repeat * pixsize; /* increase size of buffer if necessary to read whole array */ if (nbytes > buffsize) { tbuff = realloc(buffer, nbytes); if (tbuff) { buffer = tbuff; buffsize = nbytes; } else *status = MEMORY_ALLOCATION; } /* If this is not the last HDU in the file, then check if */ /* extending the heap would overwrite the following header. */ /* If so, then have to insert more blocks. */ if ( !((fptr->Fptr)->lasthdu) ) { endpos = writeheapstart + (fptr->Fptr)->heapsize + nbytes; if (endpos > (fptr->Fptr)->headstart[ (fptr->Fptr)->curhdu + 1]) { /* calc the number of blocks that need to be added */ nblock = (long) (((endpos - 1 - (fptr->Fptr)->headstart[ (fptr->Fptr)->curhdu + 1] ) / 2880) + 1); if (ffiblk(fptr, nblock, 1, status) > 0) /* insert blocks */ { sprintf(message, "Failed to extend the size of the variable length heap by %ld blocks.", nblock); ffpmsg(message); } } } /* read arrray of bytes from temporary copy */ ffmbyt(tptr, readheapstart + offset, REPORT_EOF, status); ffgbyt(tptr, nbytes, buffer, status); /* write arrray of bytes back to original file */ ffmbyt(fptr, writeheapstart + (fptr->Fptr)->heapsize, IGNORE_EOF, status); ffpbyt(fptr, nbytes, buffer, status); /* write descriptor */ ffpdes(fptr, jj, ii, repeat, (fptr->Fptr)->heapsize, status); (fptr->Fptr)->heapsize += nbytes; /* update heapsize */ if (*status > 0) { free(buffer); ffclos(tptr, status); return(*status); } } } free(buffer); ffclos(tptr, status); /* delete any empty blocks at the end of the HDU */ nblock = (long) (( (fptr->Fptr)->headstart[ (fptr->Fptr)->curhdu + 1] - (writeheapstart + (fptr->Fptr)->heapsize) ) / 2880); if (nblock > 0) { t2heapsize = (fptr->Fptr)->heapsize; /* save new heap size */ (fptr->Fptr)->heapsize = t1heapsize; /* restore original heap size */ ffdblk(fptr, nblock, status); (fptr->Fptr)->heapsize = t2heapsize; /* reset correct heap size */ } /* update the PCOUNT value (size of heap) */ ffmaky(fptr, 2, status); /* reset to beginning of header */ ffgkyjj(fptr, "PCOUNT", &pcount, comm, status); if ((fptr->Fptr)->heapsize != pcount) { ffmkyj(fptr, "PCOUNT", (fptr->Fptr)->heapsize, comm, status); } ffrdef(fptr, status); /* rescan new HDU structure */ return(*status); } /*--------------------------------------------------------------------------*/ int ffgdes(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - column number (1 = 1st column of table) */ LONGLONG rownum, /* I - row number (1 = 1st row of table) */ long *length, /* O - number of elements in the row */ long *heapaddr, /* O - heap pointer to the data */ int *status) /* IO - error status */ /* get (read) the variable length vector descriptor from the table. */ { LONGLONG lengthjj, heapaddrjj; if (ffgdesll(fptr, colnum, rownum, &lengthjj, &heapaddrjj, status) > 0) return(*status); /* convert the temporary 8-byte values to 4-byte values */ /* check for overflow */ if (length) { if (lengthjj > LONG_MAX) *status = NUM_OVERFLOW; else *length = (long) lengthjj; } if (heapaddr) { if (heapaddrjj > LONG_MAX) *status = NUM_OVERFLOW; else *heapaddr = (long) heapaddrjj; } return(*status); } /*--------------------------------------------------------------------------*/ int ffgdesll(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - column number (1 = 1st column of table) */ LONGLONG rownum, /* I - row number (1 = 1st row of table) */ LONGLONG *length, /* O - number of elements in the row */ LONGLONG *heapaddr, /* O - heap pointer to the data */ int *status) /* IO - error status */ /* get (read) the variable length vector descriptor from the binary table. This is similar to ffgdes, except it supports the full 8-byte range of the length and offset values in 'Q' columns, as well as 'P' columns. */ { LONGLONG bytepos; unsigned int descript4[2] = {0,0}; LONGLONG descript8[2] = {0,0}; tcolumn *colptr; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); colptr = (fptr->Fptr)->tableptr; /* point to first column structure */ colptr += (colnum - 1); /* offset to the correct column */ if (colptr->tdatatype >= 0) { *status = NOT_VARI_LEN; return(*status); } bytepos = (fptr->Fptr)->datastart + ((fptr->Fptr)->rowlength * (rownum - 1)) + colptr->tbcol; if (colptr->tform[0] == 'P' || colptr->tform[1] == 'P') { /* read 4-byte descriptor */ if (ffgi4b(fptr, bytepos, 2, 4, (INT32BIT *) descript4, status) <= 0) { if (length) *length = (LONGLONG) descript4[0]; /* 1st word is the length */ if (heapaddr) *heapaddr = (LONGLONG) descript4[1]; /* 2nd word is the address */ } } else /* this is for 'Q' columns */ { /* read 8 byte descriptor */ if (ffgi8b(fptr, bytepos, 2, 8, (long *) descript8, status) <= 0) { if (length) *length = descript8[0]; /* 1st word is the length */ if (heapaddr) *heapaddr = descript8[1]; /* 2nd word is the address */ } } return(*status); } /*--------------------------------------------------------------------------*/ int ffgdess(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - column number (1 = 1st column of table) */ LONGLONG firstrow, /* I - first row (1 = 1st row of table) */ LONGLONG nrows, /* I - number or rows to read */ long *length, /* O - number of elements in the row */ long *heapaddr, /* O - heap pointer to the data */ int *status) /* IO - error status */ /* get (read) a range of variable length vector descriptors from the table. */ { LONGLONG rowsize, bytepos; long ii; INT32BIT descript4[2] = {0,0}; LONGLONG descript8[2] = {0,0}; tcolumn *colptr; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); colptr = (fptr->Fptr)->tableptr; /* point to first column structure */ colptr += (colnum - 1); /* offset to the correct column */ if (colptr->tdatatype >= 0) { *status = NOT_VARI_LEN; return(*status); } rowsize = (fptr->Fptr)->rowlength; bytepos = (fptr->Fptr)->datastart + (rowsize * (firstrow - 1)) + colptr->tbcol; if (colptr->tform[0] == 'P' || colptr->tform[1] == 'P') { /* read 4-byte descriptors */ for (ii = 0; ii < nrows; ii++) { /* read descriptors */ if (ffgi4b(fptr, bytepos, 2, 4, descript4, status) <= 0) { if (length) { *length = (long) descript4[0]; /* 1st word is the length */ length++; } if (heapaddr) { *heapaddr = (long) descript4[1]; /* 2nd word is the address */ heapaddr++; } bytepos += rowsize; } else return(*status); } } else /* this is for 'Q' columns */ { /* read 8-byte descriptors */ for (ii = 0; ii < nrows; ii++) { /* read descriptors */ if (ffgi8b(fptr, bytepos, 2, 8, (long *) descript8, status) <= 0) { if (length) { if (descript8[0] > LONG_MAX)*status = NUM_OVERFLOW; *length = (long) descript8[0]; /* 1st word is the length */ length++; } if (heapaddr) { if (descript8[1] > LONG_MAX)*status = NUM_OVERFLOW; *heapaddr = (long) descript8[1]; /* 2nd word is the address */ heapaddr++; } bytepos += rowsize; } else return(*status); } } return(*status); } /*--------------------------------------------------------------------------*/ int ffgdessll(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - column number (1 = 1st column of table) */ LONGLONG firstrow, /* I - first row (1 = 1st row of table) */ LONGLONG nrows, /* I - number or rows to read */ LONGLONG *length, /* O - number of elements in the row */ LONGLONG *heapaddr, /* O - heap pointer to the data */ int *status) /* IO - error status */ /* get (read) a range of variable length vector descriptors from the table. */ { LONGLONG rowsize, bytepos; long ii; unsigned int descript4[2] = {0,0}; LONGLONG descript8[2] = {0,0}; tcolumn *colptr; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); colptr = (fptr->Fptr)->tableptr; /* point to first column structure */ colptr += (colnum - 1); /* offset to the correct column */ if (colptr->tdatatype >= 0) { *status = NOT_VARI_LEN; return(*status); } rowsize = (fptr->Fptr)->rowlength; bytepos = (fptr->Fptr)->datastart + (rowsize * (firstrow - 1)) + colptr->tbcol; if (colptr->tform[0] == 'P' || colptr->tform[1] == 'P') { /* read 4-byte descriptors */ for (ii = 0; ii < nrows; ii++) { /* read descriptors */ if (ffgi4b(fptr, bytepos, 2, 4, (INT32BIT *) descript4, status) <= 0) { if (length) { *length = (LONGLONG) descript4[0]; /* 1st word is the length */ length++; } if (heapaddr) { *heapaddr = (LONGLONG) descript4[1]; /* 2nd word is the address */ heapaddr++; } bytepos += rowsize; } else return(*status); } } else /* this is for 'Q' columns */ { /* read 8-byte descriptors */ for (ii = 0; ii < nrows; ii++) { /* read descriptors */ /* cast to type (long *) even though it is actually (LONGLONG *) */ if (ffgi8b(fptr, bytepos, 2, 8, (long *) descript8, status) <= 0) { if (length) { *length = descript8[0]; /* 1st word is the length */ length++; } if (heapaddr) { *heapaddr = descript8[1]; /* 2nd word is the address */ heapaddr++; } bytepos += rowsize; } else return(*status); } } return(*status); } /*--------------------------------------------------------------------------*/ int ffpdes(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - column number (1 = 1st column of table) */ LONGLONG rownum, /* I - row number (1 = 1st row of table) */ LONGLONG length, /* I - number of elements in the row */ LONGLONG heapaddr, /* I - heap pointer to the data */ int *status) /* IO - error status */ /* put (write) the variable length vector descriptor to the table. */ { LONGLONG bytepos; unsigned int descript4[2]; LONGLONG descript8[2]; tcolumn *colptr; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); colptr = (fptr->Fptr)->tableptr; /* point to first column structure */ colptr += (colnum - 1); /* offset to the correct column */ if (colptr->tdatatype >= 0) *status = NOT_VARI_LEN; bytepos = (fptr->Fptr)->datastart + ((fptr->Fptr)->rowlength * (rownum - 1)) + colptr->tbcol; ffmbyt(fptr, bytepos, IGNORE_EOF, status); /* move to element */ if (colptr->tform[0] == 'P' || colptr->tform[1] == 'P') { if (length > UINT_MAX || length < 0 || heapaddr > UINT_MAX || heapaddr < 0) { ffpmsg("P variable length column descriptor is out of range"); *status = NUM_OVERFLOW; return(*status); } descript4[0] = (unsigned int) length; /* 1st word is the length */ descript4[1] = (unsigned int) heapaddr; /* 2nd word is the address */ ffpi4b(fptr, 2, 4, (INT32BIT *) descript4, status); /* write the descriptor */ } else /* this is a 'Q' descriptor column */ { descript8[0] = length; /* 1st word is the length */ descript8[1] = heapaddr; /* 2nd word is the address */ ffpi8b(fptr, 2, 8, (long *) descript8, status); /* write the descriptor */ } return(*status); } /*--------------------------------------------------------------------------*/ int ffchdu(fitsfile *fptr, /* I - FITS file pointer */ int *status) /* IO - error status */ { /* close the current HDU. If we have write access to the file, then: - write the END keyword and pad header with blanks if necessary - check the data fill values, and rewrite them if not correct */ char message[FLEN_ERRMSG]; int ii, stdriver, ntilebins; /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); /* no need to do any further updating of the HDU */ } else if ((fptr->Fptr)->writemode == 1) { urltype2driver("stream://", &stdriver); /* don't rescan header in special case of writing to stdout */ if (((fptr->Fptr)->driver != stdriver)) ffrdef(fptr, status); if ((fptr->Fptr)->heapsize > 0) { ffuptf(fptr, status); /* update the variable length TFORM values */ } ffpdfl(fptr, status); /* insure correct data fill values */ } if ((fptr->Fptr)->open_count == 1) { /* free memory for the CHDU structure only if no other files are using it */ if ((fptr->Fptr)->tableptr) { free((fptr->Fptr)->tableptr); (fptr->Fptr)->tableptr = NULL; /* free the tile-compressed image cache, if it exists */ if ((fptr->Fptr)->tilerow) { ntilebins = (((fptr->Fptr)->znaxis[0] - 1) / ((fptr->Fptr)->tilesize[0])) + 1; for (ii = 0; ii < ntilebins; ii++) { if ((fptr->Fptr)->tiledata[ii]) { free((fptr->Fptr)->tiledata[ii]); } if ((fptr->Fptr)->tilenullarray[ii]) { free((fptr->Fptr)->tilenullarray[ii]); } } free((fptr->Fptr)->tileanynull); free((fptr->Fptr)->tiletype); free((fptr->Fptr)->tiledatasize); free((fptr->Fptr)->tilenullarray); free((fptr->Fptr)->tiledata); free((fptr->Fptr)->tilerow); (fptr->Fptr)->tileanynull = 0; (fptr->Fptr)->tiletype = 0; (fptr->Fptr)->tiledatasize = 0; (fptr->Fptr)->tilenullarray = 0; (fptr->Fptr)->tiledata = 0; (fptr->Fptr)->tilerow = 0; } } } if (*status > 0 && *status != NO_CLOSE_ERROR) { sprintf(message, "Error while closing HDU number %d (ffchdu).", (fptr->Fptr)->curhdu); ffpmsg(message); } return(*status); } /*--------------------------------------------------------------------------*/ int ffuptf(fitsfile *fptr, /* I - FITS file pointer */ int *status) /* IO - error status */ /* Update the value of the TFORM keywords for the variable length array columns to make sure they all have the form 1Px(len) or Px(len) where 'len' is the maximum length of the vector in the table (e.g., '1PE(400)') */ { int ii; long tflds; LONGLONG length, addr, maxlen, naxis2, jj; char comment[FLEN_COMMENT], keyname[FLEN_KEYWORD]; char tform[FLEN_VALUE], newform[FLEN_VALUE], lenval[40]; char card[FLEN_CARD]; char message[FLEN_ERRMSG]; char *tmp; ffmaky(fptr, 2, status); /* reset to beginning of header */ ffgkyjj(fptr, "NAXIS2", &naxis2, comment, status); ffgkyj(fptr, "TFIELDS", &tflds, comment, status); for (ii = 1; ii <= tflds; ii++) /* loop over all the columns */ { ffkeyn("TFORM", ii, keyname, status); /* construct name */ if (ffgkys(fptr, keyname, tform, comment, status) > 0) { sprintf(message, "Error while updating variable length vector TFORMn values (ffuptf)."); ffpmsg(message); return(*status); } /* is this a variable array length column ? */ if (tform[0] == 'P' || tform[1] == 'P' || tform[0] == 'Q' || tform[1] == 'Q') { /* get the max length */ maxlen = 0; for (jj=1; jj <= naxis2; jj++) { ffgdesll(fptr, ii, jj, &length, &addr, status); if (length > maxlen) maxlen = length; } /* construct the new keyword value */ strcpy(newform, "'"); tmp = strchr(tform, '('); /* truncate old length, if present */ if (tmp) *tmp = 0; strcat(newform, tform); /* print as double, because the string-to-64-bit */ /* conversion is platform dependent (%lld, %ld, %I64d) */ sprintf(lenval, "(%.0f)", (double) maxlen); strcat(newform,lenval); while(strlen(newform) < 9) strcat(newform," "); /* append spaces 'till length = 8 */ strcat(newform,"'" ); /* append closing parenthesis */ /* would be simpler to just call ffmkyj here, but this */ /* would force linking in all the modkey & putkey routines */ ffmkky(keyname, newform, comment, card, status); /* make new card */ ffmkey(fptr, card, status); /* replace last read keyword */ } } return(*status); } /*--------------------------------------------------------------------------*/ int ffrdef(fitsfile *fptr, /* I - FITS file pointer */ int *status) /* IO - error status */ /* ReDEFine the structure of a data unit. This routine re-reads the CHDU header keywords to determine the structure and length of the current data unit. This redefines the start of the next HDU. */ { int dummy, tstatus = 0; LONGLONG naxis2; LONGLONG pcount; char card[FLEN_CARD], comm[FLEN_COMMENT], valstring[FLEN_VALUE]; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } else if ((fptr->Fptr)->writemode == 1) /* write access to the file? */ { /* don't need to check NAXIS2 and PCOUNT if data hasn't been written */ if ((fptr->Fptr)->datastart != DATA_UNDEFINED) { /* update NAXIS2 keyword if more rows were written to the table */ /* and if the user has not explicitly reset the NAXIS2 value */ if ((fptr->Fptr)->hdutype != IMAGE_HDU) { ffmaky(fptr, 2, status); if (ffgkyjj(fptr, "NAXIS2", &naxis2, comm, &tstatus) > 0) { /* Couldn't read NAXIS2 (odd!); in certain circumstances */ /* this may be normal, so ignore the error. */ naxis2 = (fptr->Fptr)->numrows; } if ((fptr->Fptr)->numrows > naxis2 && (fptr->Fptr)->origrows == naxis2) /* if origrows is not equal to naxis2, then the user must */ /* have manually modified the NAXIS2 keyword value, and */ /* we will assume that the current value is correct. */ { /* would be simpler to just call ffmkyj here, but this */ /* would force linking in all the modkey & putkey routines */ /* print as double because the 64-bit int conversion */ /* is platform dependent (%lld, %ld, %I64 ) */ sprintf(valstring, "%.0f", (double) ((fptr->Fptr)->numrows)); ffmkky("NAXIS2", valstring, comm, card, status); ffmkey(fptr, card, status); } } /* if data has been written to variable length columns in a */ /* binary table, then we may need to update the PCOUNT value */ if ((fptr->Fptr)->heapsize > 0) { ffmaky(fptr, 2, status); ffgkyjj(fptr, "PCOUNT", &pcount, comm, status); if ((fptr->Fptr)->heapsize != pcount) { ffmkyj(fptr, "PCOUNT", (fptr->Fptr)->heapsize, comm, status); } } } if (ffwend(fptr, status) <= 0) /* rewrite END keyword and fill */ { ffrhdu(fptr, &dummy, status); /* re-scan the header keywords */ } } return(*status); } /*--------------------------------------------------------------------------*/ int ffhdef(fitsfile *fptr, /* I - FITS file pointer */ int morekeys, /* I - reserve space for this many keywords */ int *status) /* IO - error status */ /* based on the number of keywords which have already been written, plus the number of keywords to reserve space for, we then can define where the data unit should start (it must start at the beginning of a 2880-byte logical block). This routine will only have any effect if the starting location of the data unit following the header is not already defined. In any case, it is always possible to add more keywords to the header even if the data has already been written. It is just more efficient to reserve the space in advance. */ { LONGLONG delta; if (*status > 0 || morekeys < 1) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) { ffrdef(fptr, status); /* ffrdef defines the offset to datastart and the start of */ /* the next HDU based on the number of existing keywords. */ /* We need to increment both of these values based on */ /* the number of new keywords to be added. */ delta = (((fptr->Fptr)->headend + (morekeys * 80)) / 2880 + 1) * 2880 - (fptr->Fptr)->datastart; (fptr->Fptr)->datastart += delta; (fptr->Fptr)->headstart[ (fptr->Fptr)->curhdu + 1] += delta; } return(*status); } /*--------------------------------------------------------------------------*/ int ffwend(fitsfile *fptr, /* I - FITS file pointer */ int *status) /* IO - error status */ /* write the END card and following fill (space chars) in the current header */ { int ii, tstatus; LONGLONG endpos; long nspace; char blankkey[FLEN_CARD], endkey[FLEN_CARD], keyrec[FLEN_CARD] = ""; if (*status > 0) return(*status); endpos = (fptr->Fptr)->headend; /* we assume that the HDUposition == curhdu in all cases */ /* calc the data starting position if not currently defined */ if ((fptr->Fptr)->datastart == DATA_UNDEFINED) (fptr->Fptr)->datastart = ( endpos / 2880 + 1 ) * 2880; /* calculate the number of blank keyword slots in the header */ nspace = (long) (( (fptr->Fptr)->datastart - endpos ) / 80); /* construct a blank and END keyword (80 spaces ) */ strcpy(blankkey, " "); strcat(blankkey, " "); strcpy(endkey, "END "); strcat(endkey, " "); /* check if header is already correctly terminated with END and fill */ tstatus=0; ffmbyt(fptr, endpos, REPORT_EOF, &tstatus); /* move to header end */ for (ii=0; ii < nspace; ii++) { ffgbyt(fptr, 80, keyrec, &tstatus); /* get next keyword */ if (tstatus) break; if (strncmp(keyrec, blankkey, 80) && strncmp(keyrec, endkey, 80)) break; } if (ii == nspace && !tstatus) { /* check if the END keyword exists at the correct position */ endpos=maxvalue( endpos, ( (fptr->Fptr)->datastart - 2880 ) ); ffmbyt(fptr, endpos, REPORT_EOF, &tstatus); /* move to END position */ ffgbyt(fptr, 80, keyrec, &tstatus); /* read the END keyword */ if ( !strncmp(keyrec, endkey, 80) && !tstatus) { /* store this position, for later reference */ (fptr->Fptr)->ENDpos = endpos; return(*status); /* END card was already correct */ } } /* header was not correctly terminated, so write the END and blank fill */ endpos = (fptr->Fptr)->headend; ffmbyt(fptr, endpos, IGNORE_EOF, status); /* move to header end */ for (ii=0; ii < nspace; ii++) ffpbyt(fptr, 80, blankkey, status); /* write the blank keywords */ /* The END keyword must either be placed immediately after the last keyword that was written (as indicated by the headend value), or must be in the first 80 bytes of the 2880-byte FITS record immediately preceeding the data unit, whichever is further in the file. The latter will occur if space has been reserved for more header keywords which have not yet been written. */ endpos=maxvalue( endpos, ( (fptr->Fptr)->datastart - 2880 ) ); ffmbyt(fptr, endpos, REPORT_EOF, status); /* move to END position */ ffpbyt(fptr, 80, endkey, status); /* write the END keyword to header */ /* store this position, for later reference */ (fptr->Fptr)->ENDpos = endpos; if (*status > 0) ffpmsg("Error while writing END card (ffwend)."); return(*status); } /*--------------------------------------------------------------------------*/ int ffpdfl(fitsfile *fptr, /* I - FITS file pointer */ int *status) /* IO - error status */ /* Write the Data Unit Fill values if they are not already correct. The fill values are used to fill out the last 2880 byte block of the HDU. Fill the data unit with zeros or blanks depending on the type of HDU from the end of the data to the end of the current FITS 2880 byte block */ { char chfill, fill[2880]; LONGLONG fillstart; int nfill, tstatus, ii; if (*status > 0) return(*status); if (fptr->HDUposition != (fptr->Fptr)->curhdu) return(*status); /* fill has already been correctly written */ if ((fptr->Fptr)->heapstart == 0) return(*status); /* null data unit, so there is no fill */ fillstart = (fptr->Fptr)->datastart + (fptr->Fptr)->heapstart + (fptr->Fptr)->heapsize; nfill = (long) ((fillstart + 2879) / 2880 * 2880 - fillstart); if ((fptr->Fptr)->hdutype == ASCII_TBL) chfill = 32; /* ASCII tables are filled with spaces */ else chfill = 0; /* all other extensions are filled with zeros */ tstatus = 0; if (!nfill) /* no fill bytes; just check that entire table exists */ { fillstart--; nfill = 1; ffmbyt(fptr, fillstart, REPORT_EOF, &tstatus); /* move to last byte */ ffgbyt(fptr, nfill, fill, &tstatus); /* get the last byte */ if (tstatus == 0) return(*status); /* no EOF error, so everything is OK */ } else { ffmbyt(fptr, fillstart, REPORT_EOF, &tstatus); /* move to fill area */ ffgbyt(fptr, nfill, fill, &tstatus); /* get the fill bytes */ if (tstatus == 0) { for (ii = 0; ii < nfill; ii++) { if (fill[ii] != chfill) break; } if (ii == nfill) return(*status); /* all the fill values were correct */ } } /* fill values are incorrect or have not been written, so write them */ memset(fill, chfill, nfill); /* fill the buffer with the fill value */ ffmbyt(fptr, fillstart, IGNORE_EOF, status); /* move to fill area */ ffpbyt(fptr, nfill, fill, status); /* write the fill bytes */ if (*status > 0) ffpmsg("Error writing Data Unit fill bytes (ffpdfl)."); return(*status); } /********************************************************************** ffchfl : Check Header Fill values Check that the header unit is correctly filled with blanks from the END card to the end of the current FITS 2880-byte block Function parameters: fptr Fits file pointer status output error status Translated ftchfl into C by Peter Wilson, Oct. 1997 **********************************************************************/ int ffchfl( fitsfile *fptr, int *status) { int nblank,i,gotend; LONGLONG endpos; char rec[FLEN_CARD]; char *blanks=" "; /* 80 spaces */ if( *status > 0 ) return (*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); /* calculate the number of blank keyword slots in the header */ endpos=(fptr->Fptr)->headend; nblank=(long) (((fptr->Fptr)->datastart-endpos)/80); /* move the i/o pointer to the end of the header keywords */ ffmbyt(fptr,endpos,TRUE,status); /* find the END card (there may be blank keywords perceeding it) */ gotend=FALSE; for(i=0;i 0 ) { rec[FLEN_CARD - 1] = '\0'; /* make sure string is null terminated */ ffpmsg(rec); return( *status ); } } return( *status ); } /********************************************************************** ffcdfl : Check Data Unit Fill values Check that the data unit is correctly filled with zeros or blanks from the end of the data to the end of the current FITS 2880 byte block Function parameters: fptr Fits file pointer status output error status Translated ftcdfl into C by Peter Wilson, Oct. 1997 **********************************************************************/ int ffcdfl( fitsfile *fptr, int *status) { int nfill,i; LONGLONG filpos; char chfill,chbuff[2880]; if( *status > 0 ) return( *status ); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); /* check if the data unit is null */ if( (fptr->Fptr)->heapstart==0 ) return( *status ); /* calculate starting position of the fill bytes, if any */ filpos = (fptr->Fptr)->datastart + (fptr->Fptr)->heapstart + (fptr->Fptr)->heapsize; /* calculate the number of fill bytes */ nfill = (long) ((filpos + 2879) / 2880 * 2880 - filpos); if( nfill == 0 ) return( *status ); /* move to the beginning of the fill bytes */ ffmbyt(fptr, filpos, FALSE, status); if( ffgbyt(fptr, nfill, chbuff, status) > 0) { ffpmsg("Error reading data unit fill bytes (ffcdfl)."); return( *status ); } if( (fptr->Fptr)->hdutype==ASCII_TBL ) chfill = 32; /* ASCII tables are filled with spaces */ else chfill = 0; /* all other extensions are filled with zeros */ /* check for all zeros or blanks */ for(i=0;iFptr)->hdutype==ASCII_TBL ) ffpmsg("Warning: remaining bytes following ASCII table data are not filled with blanks."); else ffpmsg("Warning: remaining bytes following data are not filled with zeros."); return( *status ); } } return( *status ); } /*--------------------------------------------------------------------------*/ int ffcrhd(fitsfile *fptr, /* I - FITS file pointer */ int *status) /* IO - error status */ /* CReate Header Data unit: Create, initialize, and move the i/o pointer to a new extension appended to the end of the FITS file. */ { int tstatus = 0; LONGLONG bytepos, *ptr; if (*status > 0) return(*status); if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); /* If the current header is empty, we don't have to do anything */ if ((fptr->Fptr)->headend == (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu] ) return(*status); while (ffmrhd(fptr, 1, 0, &tstatus) == 0); /* move to end of file */ if ((fptr->Fptr)->maxhdu == (fptr->Fptr)->MAXHDU) { /* allocate more space for the headstart array */ ptr = (LONGLONG*) realloc( (fptr->Fptr)->headstart, ((fptr->Fptr)->MAXHDU + 1001) * sizeof(LONGLONG) ); if (ptr == NULL) return (*status = MEMORY_ALLOCATION); else { (fptr->Fptr)->MAXHDU = (fptr->Fptr)->MAXHDU + 1000; (fptr->Fptr)->headstart = ptr; } } if (ffchdu(fptr, status) <= 0) /* close the current HDU */ { bytepos = (fptr->Fptr)->headstart[(fptr->Fptr)->maxhdu + 1]; /* last */ ffmbyt(fptr, bytepos, IGNORE_EOF, status); /* move file ptr to it */ (fptr->Fptr)->maxhdu++; /* increment the known number of HDUs */ (fptr->Fptr)->curhdu = (fptr->Fptr)->maxhdu; /* set current HDU loc */ fptr->HDUposition = (fptr->Fptr)->maxhdu; /* set current HDU loc */ (fptr->Fptr)->nextkey = bytepos; /* next keyword = start of header */ (fptr->Fptr)->headend = bytepos; /* end of header */ (fptr->Fptr)->datastart = DATA_UNDEFINED; /* start data unit undefined */ /* any other needed resets */ /* reset the dithering offset that may have been calculated for the */ /* previous HDU back to the requested default value */ (fptr->Fptr)->dither_seed = (fptr->Fptr)->request_dither_seed; } return(*status); } /*--------------------------------------------------------------------------*/ int ffdblk(fitsfile *fptr, /* I - FITS file pointer */ long nblocks, /* I - number of 2880-byte blocks to delete */ int *status) /* IO - error status */ /* Delete the specified number of 2880-byte blocks from the end of the CHDU by shifting all following extensions up this number of blocks. */ { char buffer[2880]; int tstatus, ii; LONGLONG readpos, writepos; if (*status > 0 || nblocks <= 0) return(*status); tstatus = 0; /* pointers to the read and write positions */ readpos = (fptr->Fptr)->datastart + (fptr->Fptr)->heapstart + (fptr->Fptr)->heapsize; readpos = ((readpos + 2879) / 2880) * 2880; /* start of block */ /* the following formula is wrong because the current data unit may have been extended without updating the headstart value of the following HDU. readpos = (fptr->Fptr)->headstart[((fptr->Fptr)->curhdu) + 1]; */ writepos = readpos - ((LONGLONG)nblocks * 2880); while ( !ffmbyt(fptr, readpos, REPORT_EOF, &tstatus) && !ffgbyt(fptr, 2880L, buffer, &tstatus) ) { ffmbyt(fptr, writepos, REPORT_EOF, status); ffpbyt(fptr, 2880L, buffer, status); if (*status > 0) { ffpmsg("Error deleting FITS blocks (ffdblk)"); return(*status); } readpos += 2880; /* increment to next block to transfer */ writepos += 2880; } /* now fill the last nblock blocks with zeros */ memset(buffer, 0, 2880); ffmbyt(fptr, writepos, REPORT_EOF, status); for (ii = 0; ii < nblocks; ii++) ffpbyt(fptr, 2880L, buffer, status); /* move back before the deleted blocks, since they may be deleted */ /* and we do not want to delete the current active buffer */ ffmbyt(fptr, writepos - 1, REPORT_EOF, status); /* truncate the file to the new size, if supported on this device */ fftrun(fptr, writepos, status); /* recalculate the starting location of all subsequent HDUs */ for (ii = (fptr->Fptr)->curhdu; ii <= (fptr->Fptr)->maxhdu; ii++) (fptr->Fptr)->headstart[ii + 1] -= ((LONGLONG)nblocks * 2880); return(*status); } /*--------------------------------------------------------------------------*/ int ffghdt(fitsfile *fptr, /* I - FITS file pointer */ int *exttype, /* O - type of extension, 0, 1, or 2 */ /* for IMAGE_HDU, ASCII_TBL, or BINARY_TBL */ int *status) /* IO - error status */ /* Return the type of the CHDU. This returns the 'logical' type of the HDU, not necessarily the physical type, so in the case of a compressed image stored in a binary table, this will return the type as an Image, not a binary table. */ { if (*status > 0) return(*status); if (fptr->HDUposition == 0 && (fptr->Fptr)->headend == 0) { /* empty primary array is alway an IMAGE_HDU */ *exttype = IMAGE_HDU; } else { /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) { /* rescan header if data structure is undefined */ if ( ffrdef(fptr, status) > 0) return(*status); } *exttype = (fptr->Fptr)->hdutype; /* return the type of HDU */ /* check if this is a compressed image */ if ((fptr->Fptr)->compressimg) *exttype = IMAGE_HDU; } return(*status); } /*--------------------------------------------------------------------------*/ int fits_is_reentrant(void) /* Was CFITSIO compiled with the -D_REENTRANT flag? 1 = yes, 0 = no. Note that specifying the -D_REENTRANT flag is required, but may not be sufficient, to ensure that CFITSIO can be safely used in a multi-threaded environoment. */ { #ifdef _REENTRANT return(1); #else return(0); #endif } /*--------------------------------------------------------------------------*/ int fits_is_compressed_image(fitsfile *fptr, /* I - FITS file pointer */ int *status) /* IO - error status */ /* Returns TRUE if the CHDU is a compressed image, else returns zero. */ { if (*status > 0) return(0); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) { /* rescan header if data structure is undefined */ if ( ffrdef(fptr, status) > 0) return(*status); } /* check if this is a compressed image */ if ((fptr->Fptr)->compressimg) return(1); return(0); } /*--------------------------------------------------------------------------*/ int ffgipr(fitsfile *infptr, /* I - FITS file pointer */ int maxaxis, /* I - max number of axes to return */ int *bitpix, /* O - image data type */ int *naxis, /* O - image dimension (NAXIS value) */ long *naxes, /* O - size of image dimensions */ int *status) /* IO - error status */ /* get the datatype and size of the input image */ { if (*status > 0) return(*status); /* don't return the parameter if a null pointer was given */ if (bitpix) fits_get_img_type(infptr, bitpix, status); /* get BITPIX value */ if (naxis) fits_get_img_dim(infptr, naxis, status); /* get NAXIS value */ if (naxes) fits_get_img_size(infptr, maxaxis, naxes, status); /* get NAXISn values */ return(*status); } /*--------------------------------------------------------------------------*/ int ffgiprll(fitsfile *infptr, /* I - FITS file pointer */ int maxaxis, /* I - max number of axes to return */ int *bitpix, /* O - image data type */ int *naxis, /* O - image dimension (NAXIS value) */ LONGLONG *naxes, /* O - size of image dimensions */ int *status) /* IO - error status */ /* get the datatype and size of the input image */ { if (*status > 0) return(*status); /* don't return the parameter if a null pointer was given */ if (bitpix) fits_get_img_type(infptr, bitpix, status); /* get BITPIX value */ if (naxis) fits_get_img_dim(infptr, naxis, status); /* get NAXIS value */ if (naxes) fits_get_img_sizell(infptr, maxaxis, naxes, status); /* get NAXISn values */ return(*status); } /*--------------------------------------------------------------------------*/ int ffgidt( fitsfile *fptr, /* I - FITS file pointer */ int *imgtype, /* O - image data type */ int *status) /* IO - error status */ /* Get the datatype of the image (= BITPIX keyword for normal image, or ZBITPIX for a compressed image) */ { if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); /* reset to beginning of header */ ffmaky(fptr, 1, status); /* simply move to beginning of header */ if ((fptr->Fptr)->hdutype == IMAGE_HDU) { ffgky(fptr, TINT, "BITPIX", imgtype, NULL, status); } else if ((fptr->Fptr)->compressimg) { /* this is a binary table containing a compressed image */ ffgky(fptr, TINT, "ZBITPIX", imgtype, NULL, status); } else { *status = NOT_IMAGE; } return(*status); } /*--------------------------------------------------------------------------*/ int ffgiet( fitsfile *fptr, /* I - FITS file pointer */ int *imgtype, /* O - image data type */ int *status) /* IO - error status */ /* Get the effective datatype of the image (= BITPIX keyword for normal image, or ZBITPIX for a compressed image) */ { int tstatus; long lngscale, lngzero = 0; double bscale, bzero, min_val, max_val; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); /* reset to beginning of header */ ffmaky(fptr, 2, status); /* simply move to beginning of header */ if ((fptr->Fptr)->hdutype == IMAGE_HDU) { ffgky(fptr, TINT, "BITPIX", imgtype, NULL, status); } else if ((fptr->Fptr)->compressimg) { /* this is a binary table containing a compressed image */ ffgky(fptr, TINT, "ZBITPIX", imgtype, NULL, status); } else { *status = NOT_IMAGE; return(*status); } /* check if the BSCALE and BZERO keywords are defined, which might change the effective datatype of the image */ tstatus = 0; ffgky(fptr, TDOUBLE, "BSCALE", &bscale, NULL, &tstatus); if (tstatus) bscale = 1.0; tstatus = 0; ffgky(fptr, TDOUBLE, "BZERO", &bzero, NULL, &tstatus); if (tstatus) bzero = 0.0; if (bscale == 1.0 && bzero == 0.0) /* no scaling */ return(*status); switch (*imgtype) { case BYTE_IMG: /* 8-bit image */ min_val = 0.; max_val = 255.0; break; case SHORT_IMG: min_val = -32768.0; max_val = 32767.0; break; case LONG_IMG: min_val = -2147483648.0; max_val = 2147483647.0; break; default: /* don't have to deal with other data types */ return(*status); } if (bscale >= 0.) { min_val = bzero + bscale * min_val; max_val = bzero + bscale * max_val; } else { max_val = bzero + bscale * min_val; min_val = bzero + bscale * max_val; } if (bzero < 2147483648.) /* don't exceed range of 32-bit integer */ lngzero = (long) bzero; lngscale = (long) bscale; if ((bzero != 2147483648.) && /* special value that exceeds integer range */ (lngzero != bzero || lngscale != bscale)) { /* not integers? */ /* floating point scaled values; just decide on required precision */ if (*imgtype == BYTE_IMG || *imgtype == SHORT_IMG) *imgtype = FLOAT_IMG; else *imgtype = DOUBLE_IMG; /* In all the remaining cases, BSCALE and BZERO are integers, and not equal to 1 and 0, respectively. */ } else if ((min_val == -128.) && (max_val == 127.)) { *imgtype = SBYTE_IMG; } else if ((min_val >= -32768.0) && (max_val <= 32767.0)) { *imgtype = SHORT_IMG; } else if ((min_val >= 0.0) && (max_val <= 65535.0)) { *imgtype = USHORT_IMG; } else if ((min_val >= -2147483648.0) && (max_val <= 2147483647.0)) { *imgtype = LONG_IMG; } else if ((min_val >= 0.0) && (max_val < 4294967296.0)) { *imgtype = ULONG_IMG; } else { /* exceeds the range of a 32-bit integer */ *imgtype = DOUBLE_IMG; } return(*status); } /*--------------------------------------------------------------------------*/ int ffgidm( fitsfile *fptr, /* I - FITS file pointer */ int *naxis , /* O - image dimension (NAXIS value) */ int *status) /* IO - error status */ /* Get the dimension of the image (= NAXIS keyword for normal image, or ZNAXIS for a compressed image) These values are cached for faster access. */ { if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); if ((fptr->Fptr)->hdutype == IMAGE_HDU) { *naxis = (fptr->Fptr)->imgdim; } else if ((fptr->Fptr)->compressimg) { *naxis = (fptr->Fptr)->zndim; } else { *status = NOT_IMAGE; } return(*status); } /*--------------------------------------------------------------------------*/ int ffgisz( fitsfile *fptr, /* I - FITS file pointer */ int nlen, /* I - number of axes to return */ long *naxes, /* O - size of image dimensions */ int *status) /* IO - error status */ /* Get the size of the image dimensions (= NAXISn keywords for normal image, or ZNAXISn for a compressed image) These values are cached for faster access. */ { int ii, naxis; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); if ((fptr->Fptr)->hdutype == IMAGE_HDU) { naxis = minvalue((fptr->Fptr)->imgdim, nlen); for (ii = 0; ii < naxis; ii++) { naxes[ii] = (long) (fptr->Fptr)->imgnaxis[ii]; } } else if ((fptr->Fptr)->compressimg) { naxis = minvalue( (fptr->Fptr)->zndim, nlen); for (ii = 0; ii < naxis; ii++) { naxes[ii] = (long) (fptr->Fptr)->znaxis[ii]; } } else { *status = NOT_IMAGE; } return(*status); } /*--------------------------------------------------------------------------*/ int ffgiszll( fitsfile *fptr, /* I - FITS file pointer */ int nlen, /* I - number of axes to return */ LONGLONG *naxes, /* O - size of image dimensions */ int *status) /* IO - error status */ /* Get the size of the image dimensions (= NAXISn keywords for normal image, or ZNAXISn for a compressed image) */ { int ii, naxis; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); if ((fptr->Fptr)->hdutype == IMAGE_HDU) { naxis = minvalue((fptr->Fptr)->imgdim, nlen); for (ii = 0; ii < naxis; ii++) { naxes[ii] = (fptr->Fptr)->imgnaxis[ii]; } } else if ((fptr->Fptr)->compressimg) { naxis = minvalue( (fptr->Fptr)->zndim, nlen); for (ii = 0; ii < naxis; ii++) { naxes[ii] = (fptr->Fptr)->znaxis[ii]; } } else { *status = NOT_IMAGE; } return(*status); }/*--------------------------------------------------------------------------*/ int ffmahd(fitsfile *fptr, /* I - FITS file pointer */ int hdunum, /* I - number of the HDU to move to */ int *exttype, /* O - type of extension, 0, 1, or 2 */ int *status) /* IO - error status */ /* Move to Absolute Header Data unit. Move to the specified HDU and read the header to initialize the table structure. Note that extnum is one based, so the primary array is extnum = 1. */ { int moveto, tstatus; char message[FLEN_ERRMSG]; LONGLONG *ptr; if (*status > 0) return(*status); else if (hdunum < 1 ) return(*status = BAD_HDU_NUM); else if (hdunum >= (fptr->Fptr)->MAXHDU ) { /* allocate more space for the headstart array */ ptr = (LONGLONG*) realloc( (fptr->Fptr)->headstart, (hdunum + 1001) * sizeof(LONGLONG) ); if (ptr == NULL) return (*status = MEMORY_ALLOCATION); else { (fptr->Fptr)->MAXHDU = hdunum + 1000; (fptr->Fptr)->headstart = ptr; } } /* set logical HDU position to the actual position, in case they differ */ fptr->HDUposition = (fptr->Fptr)->curhdu; while( ((fptr->Fptr)->curhdu) + 1 != hdunum) /* at the correct HDU? */ { /* move directly to the extension if we know that it exists, otherwise move to the highest known extension. */ moveto = minvalue(hdunum - 1, ((fptr->Fptr)->maxhdu) + 1); /* test if HDU exists */ if ((fptr->Fptr)->headstart[moveto] < (fptr->Fptr)->logfilesize ) { if (ffchdu(fptr, status) <= 0) /* close out the current HDU */ { if (ffgext(fptr, moveto, exttype, status) > 0) { /* failed to get the requested extension */ tstatus = 0; ffrhdu(fptr, exttype, &tstatus); /* restore the CHDU */ } } } else *status = END_OF_FILE; if (*status > 0) { if (*status != END_OF_FILE) { /* don't clutter up the message stack in the common case of */ /* simply hitting the end of file (often an expected error) */ sprintf(message, "Failed to move to HDU number %d (ffmahd).", hdunum); ffpmsg(message); } return(*status); } } /* return the type of HDU; tile compressed images which are stored */ /* in a binary table will return exttype = IMAGE_HDU, not BINARY_TBL */ if (exttype != NULL) ffghdt(fptr, exttype, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffmrhd(fitsfile *fptr, /* I - FITS file pointer */ int hdumov, /* I - rel. no. of HDUs to move by (+ or -) */ int *exttype, /* O - type of extension, 0, 1, or 2 */ int *status) /* IO - error status */ /* Move a Relative number of Header Data units. Offset to the specified extension and read the header to initialize the HDU structure. */ { int extnum; if (*status > 0) return(*status); extnum = fptr->HDUposition + 1 + hdumov; /* the absolute HDU number */ ffmahd(fptr, extnum, exttype, status); /* move to the HDU */ return(*status); } /*--------------------------------------------------------------------------*/ int ffmnhd(fitsfile *fptr, /* I - FITS file pointer */ int exttype, /* I - desired extension type */ char *hduname, /* I - desired EXTNAME value for the HDU */ int hduver, /* I - desired EXTVERS value for the HDU */ int *status) /* IO - error status */ /* Move to the next HDU with a given extension type (IMAGE_HDU, ASCII_TBL, BINARY_TBL, or ANY_HDU), extension name (EXTNAME or HDUNAME keyword), and EXTVERS keyword values. If hduvers = 0, then move to the first HDU with the given type and name regardless of EXTVERS value. If no matching HDU is found in the file, then the current open HDU will remain unchanged. */ { char extname[FLEN_VALUE]; int ii, hdutype, alttype, extnum, tstatus, match, exact; int slen, putback = 0, chopped = 0; long extver; if (*status > 0) return(*status); extnum = fptr->HDUposition + 1; /* save the current HDU number */ /* This is a kludge to deal with a special case where the user specified a hduname that ended with a # character, which CFITSIO previously interpreted as a flag to mean "don't copy any other HDUs in the file into the virtual file in memory. If the remaining hduname does not end with a # character (meaning that the user originally entered a hduname ending in 2 # characters) then there is the possibility that the # character should be treated literally, if the actual EXTNAME also ends with a #. Setting putback = 1 means that we need to test for this case later on. */ if ((fptr->Fptr)->only_one) { /* if true, name orignally ended with a # */ slen = strlen(hduname); if (hduname[slen - 1] != '#') /* This will fail if real EXTNAME value */ putback = 1; /* ends with 2 # characters. */ } for (ii=1; 1; ii++) /* loop over all HDUs until EOF */ { tstatus = 0; if (ffmahd(fptr, ii, &hdutype, &tstatus)) /* move to next HDU */ { ffmahd(fptr, extnum, 0, status); /* restore original file position */ return(*status = BAD_HDU_NUM); /* couldn't find desired HDU */ } alttype = -1; if (fits_is_compressed_image(fptr, status)) alttype = BINARY_TBL; /* Does this HDU have a matching type? */ if (exttype == ANY_HDU || hdutype == exttype || hdutype == alttype) { ffmaky(fptr, 2, status); /* reset to the 2nd keyword in the header */ if (ffgkys(fptr, "EXTNAME", extname, 0, &tstatus) <= 0) /* get keyword */ { if (putback) { /* more of the kludge */ /* test if the EXTNAME value ends with a #; if so, chop it */ /* off before comparing the strings */ chopped = 0; slen = strlen(extname); if (extname[slen - 1] == '#') { extname[slen - 1] = '\0'; chopped = 1; } } /* see if the strings are an exact match */ ffcmps(extname, hduname, CASEINSEN, &match, &exact); } /* if EXTNAME keyword doesn't exist, or it does not match, then try HDUNAME */ if (tstatus || !exact) { tstatus = 0; if (ffgkys(fptr, "HDUNAME", extname, 0, &tstatus) <= 0) { if (putback) { /* more of the kludge */ chopped = 0; slen = strlen(extname); if (extname[slen - 1] == '#') { extname[slen - 1] = '\0'; /* chop off the # */ chopped = 1; } } /* see if the strings are an exact match */ ffcmps(extname, hduname, CASEINSEN, &match, &exact); } } if (!tstatus && exact) /* found a matching name */ { if (hduver) /* need to check if version numbers match? */ { if (ffgkyj(fptr, "EXTVER", &extver, 0, &tstatus) > 0) extver = 1; /* assume default EXTVER value */ if ( (int) extver == hduver) { if (chopped) { /* The # was literally part of the name, not a flag */ (fptr->Fptr)->only_one = 0; } return(*status); /* found matching name and vers */ } } else { if (chopped) { /* The # was literally part of the name, not a flag */ (fptr->Fptr)->only_one = 0; } return(*status); /* found matching name */ } } /* end of !tstatus && exact */ } /* end of matching HDU type */ } /* end of loop over HDUs */ } /*--------------------------------------------------------------------------*/ int ffthdu(fitsfile *fptr, /* I - FITS file pointer */ int *nhdu, /* O - number of HDUs in the file */ int *status) /* IO - error status */ /* Return the number of HDUs that currently exist in the file. */ { int ii, extnum, tstatus; if (*status > 0) return(*status); extnum = fptr->HDUposition + 1; /* save the current HDU number */ *nhdu = extnum - 1; /* if the CHDU is empty or not completely defined, just return */ if ((fptr->Fptr)->datastart == DATA_UNDEFINED) return(*status); tstatus = 0; /* loop until EOF */ for (ii=extnum; ffmahd(fptr, ii, 0, &tstatus) <= 0; ii++) { *nhdu = ii; } ffmahd(fptr, extnum, 0, status); /* restore orig file position */ return(*status); } /*--------------------------------------------------------------------------*/ int ffgext(fitsfile *fptr, /* I - FITS file pointer */ int hdunum, /* I - no. of HDU to move get (0 based) */ int *exttype, /* O - type of extension, 0, 1, or 2 */ int *status) /* IO - error status */ /* Get Extension. Move to the specified extension and initialize the HDU structure. */ { int xcurhdu, xmaxhdu; LONGLONG xheadend; if (*status > 0) return(*status); if (ffmbyt(fptr, (fptr->Fptr)->headstart[hdunum], REPORT_EOF, status) <= 0) { /* temporarily save current values, in case of error */ xcurhdu = (fptr->Fptr)->curhdu; xmaxhdu = (fptr->Fptr)->maxhdu; xheadend = (fptr->Fptr)->headend; /* set new parameter values */ (fptr->Fptr)->curhdu = hdunum; fptr->HDUposition = hdunum; (fptr->Fptr)->maxhdu = maxvalue((fptr->Fptr)->maxhdu, hdunum); (fptr->Fptr)->headend = (fptr->Fptr)->logfilesize; /* set max size */ if (ffrhdu(fptr, exttype, status) > 0) { /* failed to get the new HDU, so restore previous values */ (fptr->Fptr)->curhdu = xcurhdu; fptr->HDUposition = xcurhdu; (fptr->Fptr)->maxhdu = xmaxhdu; (fptr->Fptr)->headend = xheadend; } } return(*status); } /*--------------------------------------------------------------------------*/ int ffiblk(fitsfile *fptr, /* I - FITS file pointer */ long nblock, /* I - no. of blocks to insert */ int headdata, /* I - insert where? 0=header, 1=data */ /* -1=beginning of file */ int *status) /* IO - error status */ /* insert 2880-byte blocks at the end of the current header or data unit */ { int tstatus, savehdu, typhdu; LONGLONG insertpt, jpoint; long ii, nshift; char charfill; char buff1[2880], buff2[2880]; char *inbuff, *outbuff, *tmpbuff; char card[FLEN_CARD]; if (*status > 0 || nblock <= 0) return(*status); tstatus = *status; if (headdata == 0 || (fptr->Fptr)->hdutype == ASCII_TBL) charfill = 32; /* headers and ASCII tables have space (32) fill */ else charfill = 0; /* images and binary tables have zero fill */ if (headdata == 0) insertpt = (fptr->Fptr)->datastart; /* insert just before data, or */ else if (headdata == -1) { insertpt = 0; strcpy(card, "XTENSION= 'IMAGE ' / IMAGE extension"); } else /* at end of data, */ { insertpt = (fptr->Fptr)->datastart + (fptr->Fptr)->heapstart + (fptr->Fptr)->heapsize; insertpt = ((insertpt + 2879) / 2880) * 2880; /* start of block */ /* the following formula is wrong because the current data unit may have been extended without updating the headstart value of the following HDU. */ /* insertpt = (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu + 1]; */ } inbuff = buff1; /* set pointers to input and output buffers */ outbuff = buff2; memset(outbuff, charfill, 2880); /* initialize buffer with fill */ if (nblock == 1) /* insert one block */ { if (headdata == -1) ffmrec(fptr, 1, card, status); /* change SIMPLE -> XTENSION */ ffmbyt(fptr, insertpt, REPORT_EOF, status); /* move to 1st point */ ffgbyt(fptr, 2880, inbuff, status); /* read first block of bytes */ while (*status <= 0) { ffmbyt(fptr, insertpt, REPORT_EOF, status); /* insert point */ ffpbyt(fptr, 2880, outbuff, status); /* write the output buffer */ if (*status > 0) return(*status); tmpbuff = inbuff; /* swap input and output pointers */ inbuff = outbuff; outbuff = tmpbuff; insertpt += 2880; /* increment insert point by 1 block */ ffmbyt(fptr, insertpt, REPORT_EOF, status); /* move to next block */ ffgbyt(fptr, 2880, inbuff, status); /* read block of bytes */ } *status = tstatus; /* reset status value */ ffmbyt(fptr, insertpt, IGNORE_EOF, status); /* move back to insert pt */ ffpbyt(fptr, 2880, outbuff, status); /* write the final block */ } else /* inserting more than 1 block */ { savehdu = (fptr->Fptr)->curhdu; /* save the current HDU number */ tstatus = *status; while(*status <= 0) /* find the last HDU in file */ ffmrhd(fptr, 1, &typhdu, status); if (*status == END_OF_FILE) { *status = tstatus; } ffmahd(fptr, savehdu + 1, &typhdu, status); /* move back to CHDU */ if (headdata == -1) ffmrec(fptr, 1, card, status); /* NOW change SIMPLE -> XTENSION */ /* number of 2880-byte blocks that have to be shifted down */ nshift = (long) (((fptr->Fptr)->headstart[(fptr->Fptr)->maxhdu + 1] - insertpt) / 2880); /* position of last block in file to be shifted */ jpoint = (fptr->Fptr)->headstart[(fptr->Fptr)->maxhdu + 1] - 2880; /* move all the blocks starting at end of file working backwards */ for (ii = 0; ii < nshift; ii++) { /* move to the read start position */ if (ffmbyt(fptr, jpoint, REPORT_EOF, status) > 0) return(*status); ffgbyt(fptr, 2880, inbuff,status); /* read one record */ /* move forward to the write postion */ ffmbyt(fptr, jpoint + ((LONGLONG) nblock * 2880), IGNORE_EOF, status); ffpbyt(fptr, 2880, inbuff, status); /* write the record */ jpoint -= 2880; } /* move back to the write start postion (might be EOF) */ ffmbyt(fptr, insertpt, IGNORE_EOF, status); for (ii = 0; ii < nblock; ii++) /* insert correct fill value */ ffpbyt(fptr, 2880, outbuff, status); } if (headdata == 0) /* update data start address */ (fptr->Fptr)->datastart += ((LONGLONG) nblock * 2880); /* update following HDU addresses */ for (ii = (fptr->Fptr)->curhdu; ii <= (fptr->Fptr)->maxhdu; ii++) (fptr->Fptr)->headstart[ii + 1] += ((LONGLONG) nblock * 2880); return(*status); } /*--------------------------------------------------------------------------*/ int ffgkcl(char *tcard) /* Return the type classification of the input header record TYP_STRUC_KEY: SIMPLE, BITPIX, NAXIS, NAXISn, EXTEND, BLOCKED, GROUPS, PCOUNT, GCOUNT, END XTENSION, TFIELDS, TTYPEn, TBCOLn, TFORMn, THEAP, and the first 4 COMMENT keywords in the primary array that define the FITS format. TYP_CMPRS_KEY: The experimental keywords used in the compressed image format ZIMAGE, ZCMPTYPE, ZNAMEn, ZVALn, ZTILEn, ZBITPIX, ZNAXISn, ZSCALE, ZZERO, ZBLANK, EXTNAME = 'COMPRESSED_IMAGE' ZSIMPLE, ZTENSION, ZEXTEND, ZBLOCKED, ZPCOUNT, ZGCOUNT TYP_SCAL_KEY: BSCALE, BZERO, TSCALn, TZEROn TYP_NULL_KEY: BLANK, TNULLn TYP_DIM_KEY: TDIMn TYP_RANG_KEY: TLMINn, TLMAXn, TDMINn, TDMAXn, DATAMIN, DATAMAX TYP_UNIT_KEY: BUNIT, TUNITn TYP_DISP_KEY: TDISPn TYP_HDUID_KEY: EXTNAME, EXTVER, EXTLEVEL, HDUNAME, HDUVER, HDULEVEL TYP_CKSUM_KEY CHECKSUM, DATASUM TYP_WCS_KEY: Primary array: WCAXES, CTYPEn, CUNITn, CRVALn, CRPIXn, CROTAn, CDELTn CDj_is, PVj_ms, LONPOLEs, LATPOLEs Pixel list: TCTYPn, TCTYns, TCUNIn, TCUNns, TCRVLn, TCRVns, TCRPXn, TCRPks, TCDn_k, TCn_ks, TPVn_m, TPn_ms, TCDLTn, TCROTn Bintable vector: jCTYPn, jCTYns, jCUNIn, jCUNns, jCRVLn, jCRVns, iCRPXn, iCRPns, jiCDn, jiCDns, jPVn_m, jPn_ms, jCDLTn, jCROTn TYP_REFSYS_KEY: EQUINOXs, EPOCH, MJD-OBSs, RADECSYS, RADESYSs TYP_COMM_KEY: COMMENT, HISTORY, (blank keyword) TYP_CONT_KEY: CONTINUE TYP_USER_KEY: all other keywords */ { char card[20], *card1, *card5; card[0] = '\0'; strncat(card, tcard, 8); /* copy the keyword name */ strcat(card, " "); /* append blanks to make at least 8 chars long */ ffupch(card); /* make sure it is in upper case */ card1 = card + 1; /* pointer to 2nd character */ card5 = card + 5; /* pointer to 6th character */ /* the strncmp function is slow, so try to be more efficient */ if (*card == 'Z') { if (FSTRNCMP (card1, "IMAGE ", 7) == 0) return (TYP_CMPRS_KEY); else if (FSTRNCMP (card1, "CMPTYPE", 7) == 0) return (TYP_CMPRS_KEY); else if (FSTRNCMP (card1, "NAME", 4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_CMPRS_KEY); } else if (FSTRNCMP (card1, "VAL", 3) == 0) { if (*(card + 4) >= '0' && *(card + 4) <= '9') return (TYP_CMPRS_KEY); } else if (FSTRNCMP (card1, "TILE", 4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_CMPRS_KEY); } else if (FSTRNCMP (card1, "BITPIX ", 7) == 0) return (TYP_CMPRS_KEY); else if (FSTRNCMP (card1, "NAXIS", 5) == 0) { if ( ( *(card + 6) >= '0' && *(card + 6) <= '9' ) || (*(card + 6) == ' ') ) return (TYP_CMPRS_KEY); } else if (FSTRNCMP (card1, "SCALE ", 7) == 0) return (TYP_CMPRS_KEY); else if (FSTRNCMP (card1, "ZERO ", 7) == 0) return (TYP_CMPRS_KEY); else if (FSTRNCMP (card1, "BLANK ", 7) == 0) return (TYP_CMPRS_KEY); else if (FSTRNCMP (card1, "SIMPLE ", 7) == 0) return (TYP_CMPRS_KEY); else if (FSTRNCMP (card1, "TENSION", 7) == 0) return (TYP_CMPRS_KEY); else if (FSTRNCMP (card1, "EXTEND ", 7) == 0) return (TYP_CMPRS_KEY); else if (FSTRNCMP (card1, "BLOCKED", 7) == 0) return (TYP_CMPRS_KEY); else if (FSTRNCMP (card1, "PCOUNT ", 7) == 0) return (TYP_CMPRS_KEY); else if (FSTRNCMP (card1, "GCOUNT ", 7) == 0) return (TYP_CMPRS_KEY); } else if (*card == ' ') { return (TYP_COMM_KEY); } else if (*card == 'B') { if (FSTRNCMP (card1, "ITPIX ", 7) == 0) return (TYP_STRUC_KEY); if (FSTRNCMP (card1, "LOCKED ", 7) == 0) return (TYP_STRUC_KEY); if (FSTRNCMP (card1, "LANK ", 7) == 0) return (TYP_NULL_KEY); if (FSTRNCMP (card1, "SCALE ", 7) == 0) return (TYP_SCAL_KEY); if (FSTRNCMP (card1, "ZERO ", 7) == 0) return (TYP_SCAL_KEY); if (FSTRNCMP (card1, "UNIT ", 7) == 0) return (TYP_UNIT_KEY); } else if (*card == 'C') { if (FSTRNCMP (card1, "OMMENT",6) == 0) { /* new comment string starting Oct 2001 */ if (FSTRNCMP (tcard, "COMMENT and Astrophysics', volume 376, page 3", 47) == 0) return (TYP_STRUC_KEY); /* original COMMENT strings from 1993 - 2001 */ if (FSTRNCMP (tcard, "COMMENT FITS (Flexible Image Transport System", 47) == 0) return (TYP_STRUC_KEY); if (FSTRNCMP (tcard, "COMMENT Astrophysics Supplement Series v44/p3", 47) == 0) return (TYP_STRUC_KEY); if (FSTRNCMP (tcard, "COMMENT Contact the NASA Science Office of St", 47) == 0) return (TYP_STRUC_KEY); if (FSTRNCMP (tcard, "COMMENT FITS Definition document #100 and oth", 47) == 0) return (TYP_STRUC_KEY); if (*(card + 7) == ' ') return (TYP_COMM_KEY); else return (TYP_USER_KEY); } if (FSTRNCMP (card1, "HECKSUM", 7) == 0) return (TYP_CKSUM_KEY); if (FSTRNCMP (card1, "ONTINUE", 7) == 0) return (TYP_CONT_KEY); if (FSTRNCMP (card1, "TYPE",4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "UNIT",4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "RVAL",4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "RPIX",4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "ROTA",4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "RDER",4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "SYER",4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "DELT",4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_WCS_KEY); } else if (*card1 == 'D') { if (*(card + 2) >= '0' && *(card + 2) <= '9') return (TYP_WCS_KEY); } } else if (*card == 'D') { if (FSTRNCMP (card1, "ATASUM ", 7) == 0) return (TYP_CKSUM_KEY); if (FSTRNCMP (card1, "ATAMIN ", 7) == 0) return (TYP_RANG_KEY); if (FSTRNCMP (card1, "ATAMAX ", 7) == 0) return (TYP_RANG_KEY); if (FSTRNCMP (card1, "ATE-OBS", 7) == 0) return (TYP_REFSYS_KEY); } else if (*card == 'E') { if (FSTRNCMP (card1, "XTEND ", 7) == 0) return (TYP_STRUC_KEY); if (FSTRNCMP (card1, "ND ", 7) == 0) return (TYP_STRUC_KEY); if (FSTRNCMP (card1, "XTNAME ", 7) == 0) { /* check for special compressed image value */ if (FSTRNCMP(tcard, "EXTNAME = 'COMPRESSED_IMAGE'", 28) == 0) return (TYP_CMPRS_KEY); else return (TYP_HDUID_KEY); } if (FSTRNCMP (card1, "XTVER ", 7) == 0) return (TYP_HDUID_KEY); if (FSTRNCMP (card1, "XTLEVEL", 7) == 0) return (TYP_HDUID_KEY); if (FSTRNCMP (card1, "QUINOX", 6) == 0) return (TYP_REFSYS_KEY); if (FSTRNCMP (card1, "QUI",3) == 0) { if (*(card+4) >= '0' && *(card+4) <= '9') return (TYP_REFSYS_KEY); } if (FSTRNCMP (card1, "POCH ", 7) == 0) return (TYP_REFSYS_KEY); } else if (*card == 'G') { if (FSTRNCMP (card1, "COUNT ", 7) == 0) return (TYP_STRUC_KEY); if (FSTRNCMP (card1, "ROUPS ", 7) == 0) return (TYP_STRUC_KEY); } else if (*card == 'H') { if (FSTRNCMP (card1, "DUNAME ", 7) == 0) return (TYP_HDUID_KEY); if (FSTRNCMP (card1, "DUVER ", 7) == 0) return (TYP_HDUID_KEY); if (FSTRNCMP (card1, "DULEVEL", 7) == 0) return (TYP_HDUID_KEY); if (FSTRNCMP (card1, "ISTORY",6) == 0) { if (*(card + 7) == ' ') return (TYP_COMM_KEY); else return (TYP_USER_KEY); } } else if (*card == 'L') { if (FSTRNCMP (card1, "ONPOLE",6) == 0) return (TYP_WCS_KEY); if (FSTRNCMP (card1, "ATPOLE",6) == 0) return (TYP_WCS_KEY); if (FSTRNCMP (card1, "ONP",3) == 0) { if (*(card+4) >= '0' && *(card+4) <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "ATP",3) == 0) { if (*(card+4) >= '0' && *(card+4) <= '9') return (TYP_WCS_KEY); } } else if (*card == 'M') { if (FSTRNCMP (card1, "JD-OBS ", 7) == 0) return (TYP_REFSYS_KEY); if (FSTRNCMP (card1, "JDOB",4) == 0) { if (*(card+5) >= '0' && *(card+5) <= '9') return (TYP_REFSYS_KEY); } } else if (*card == 'N') { if (FSTRNCMP (card1, "AXIS", 4) == 0) { if ((*card5 >= '0' && *card5 <= '9') || (*card5 == ' ')) return (TYP_STRUC_KEY); } } else if (*card == 'P') { if (FSTRNCMP (card1, "COUNT ", 7) == 0) return (TYP_STRUC_KEY); if (*card1 == 'C') { if (*(card + 2) >= '0' && *(card + 2) <= '9') return (TYP_WCS_KEY); } else if (*card1 == 'V') { if (*(card + 2) >= '0' && *(card + 2) <= '9') return (TYP_WCS_KEY); } else if (*card1 == 'S') { if (*(card + 2) >= '0' && *(card + 2) <= '9') return (TYP_WCS_KEY); } } else if (*card == 'R') { if (FSTRNCMP (card1, "ADECSYS", 7) == 0) return (TYP_REFSYS_KEY); if (FSTRNCMP (card1, "ADESYS", 6) == 0) return (TYP_REFSYS_KEY); if (FSTRNCMP (card1, "ADE",3) == 0) { if (*(card+4) >= '0' && *(card+4) <= '9') return (TYP_REFSYS_KEY); } } else if (*card == 'S') { if (FSTRNCMP (card1, "IMPLE ", 7) == 0) return (TYP_STRUC_KEY); } else if (*card == 'T') { if (FSTRNCMP (card1, "TYPE", 4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_STRUC_KEY); } else if (FSTRNCMP (card1, "FORM", 4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_STRUC_KEY); } else if (FSTRNCMP (card1, "BCOL", 4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_STRUC_KEY); } else if (FSTRNCMP (card1, "FIELDS ", 7) == 0) return (TYP_STRUC_KEY); else if (FSTRNCMP (card1, "HEAP ", 7) == 0) return (TYP_STRUC_KEY); else if (FSTRNCMP (card1, "NULL", 4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_NULL_KEY); } else if (FSTRNCMP (card1, "DIM", 3) == 0) { if (*(card + 4) >= '0' && *(card + 4) <= '9') return (TYP_DIM_KEY); } else if (FSTRNCMP (card1, "UNIT", 4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_UNIT_KEY); } else if (FSTRNCMP (card1, "DISP", 4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_DISP_KEY); } else if (FSTRNCMP (card1, "SCAL", 4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_SCAL_KEY); } else if (FSTRNCMP (card1, "ZERO", 4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_SCAL_KEY); } else if (FSTRNCMP (card1, "LMIN", 4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_RANG_KEY); } else if (FSTRNCMP (card1, "LMAX", 4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_RANG_KEY); } else if (FSTRNCMP (card1, "DMIN", 4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_RANG_KEY); } else if (FSTRNCMP (card1, "DMAX", 4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_RANG_KEY); } else if (FSTRNCMP (card1, "CTYP",4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CTY",3) == 0) { if (*(card+4) >= '0' && *(card+4) <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CUNI",4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CUN",3) == 0) { if (*(card+4) >= '0' && *(card+4) <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CRVL",4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CRV",3) == 0) { if (*(card+4) >= '0' && *(card+4) <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CRPX",4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CRP",3) == 0) { if (*(card+4) >= '0' && *(card+4) <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CROT",4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CDLT",4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CDE",3) == 0) { if (*(card+4) >= '0' && *(card+4) <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CRD",3) == 0) { if (*(card+4) >= '0' && *(card+4) <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CSY",3) == 0) { if (*(card+4) >= '0' && *(card+4) <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "WCS",3) == 0) { if (*(card+4) >= '0' && *(card+4) <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "C",1) == 0) { if (*(card + 2) >= '0' && *(card + 2) <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "P",1) == 0) { if (*(card + 2) >= '0' && *(card + 2) <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "V",1) == 0) { if (*(card + 2) >= '0' && *(card + 2) <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "S",1) == 0) { if (*(card + 2) >= '0' && *(card + 2) <= '9') return (TYP_WCS_KEY); } } else if (*card == 'X') { if (FSTRNCMP (card1, "TENSION", 7) == 0) return (TYP_STRUC_KEY); } else if (*card == 'W') { if (FSTRNCMP (card1, "CSAXES", 6) == 0) return (TYP_WCS_KEY); if (FSTRNCMP (card1, "CSNAME", 6) == 0) return (TYP_WCS_KEY); if (FSTRNCMP (card1, "CAX", 3) == 0) { if (*(card + 4) >= '0' && *(card + 4) <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CSN", 3) == 0) { if (*(card + 4) >= '0' && *(card + 4) <= '9') return (TYP_WCS_KEY); } } else if (*card >= '0' && *card <= '9') { if (*card1 == 'C') { if (FSTRNCMP (card1, "CTYP",4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CTY",3) == 0) { if (*(card+4) >= '0' && *(card+4) <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CUNI",4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CUN",3) == 0) { if (*(card+4) >= '0' && *(card+4) <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CRVL",4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CRV",3) == 0) { if (*(card+4) >= '0' && *(card+4) <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CRPX",4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CRP",3) == 0) { if (*(card+4) >= '0' && *(card+4) <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CROT",4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CDLT",4) == 0) { if (*card5 >= '0' && *card5 <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CDE",3) == 0) { if (*(card+4) >= '0' && *(card+4) <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CRD",3) == 0) { if (*(card+4) >= '0' && *(card+4) <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "CSY",3) == 0) { if (*(card+4) >= '0' && *(card+4) <= '9') return (TYP_WCS_KEY); } } else if (FSTRNCMP (card1, "V",1) == 0) { if (*(card + 2) >= '0' && *(card + 2) <= '9') return (TYP_WCS_KEY); } else if (FSTRNCMP (card1, "S",1) == 0) { if (*(card + 2) >= '0' && *(card + 2) <= '9') return (TYP_WCS_KEY); } else if (*card1 >= '0' && *card1 <= '9') { /* 2 digits at beginning of keyword */ if ( (*(card + 2) == 'P') && (*(card + 3) == 'C') ) { if (*(card + 4) >= '0' && *(card + 4) <= '9') return (TYP_WCS_KEY); /* ijPCn keyword */ } else if ( (*(card + 2) == 'C') && (*(card + 3) == 'D') ) { if (*(card + 4) >= '0' && *(card + 4) <= '9') return (TYP_WCS_KEY); /* ijCDn keyword */ } } } return (TYP_USER_KEY); /* by default all others are user keywords */ } /*--------------------------------------------------------------------------*/ int ffdtyp(const char *cval, /* I - formatted string representation of the value */ char *dtype, /* O - datatype code: C, L, F, I, or X */ int *status) /* IO - error status */ /* determine implicit datatype of input string. This assumes that the string conforms to the FITS standard for keyword values, so may not detect all invalid formats. */ { if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (cval[0] == '\0') return(*status = VALUE_UNDEFINED); else if (cval[0] == '\'') *dtype = 'C'; /* character string starts with a quote */ else if (cval[0] == 'T' || cval[0] == 'F') *dtype = 'L'; /* logical = T or F character */ else if (cval[0] == '(') *dtype = 'X'; /* complex datatype "(1.2, -3.4)" */ else if (strchr(cval,'.')) *dtype = 'F'; /* float usualy contains a decimal point */ else if (strchr(cval,'E') || strchr(cval,'D') ) *dtype = 'F'; /* exponential contains a E or D */ else *dtype = 'I'; /* if none of the above assume it is integer */ return(*status); } /*--------------------------------------------------------------------------*/ int ffinttyp(char *cval, /* I - formatted string representation of the integer */ int *dtype, /* O - datatype code: TBYTE, TSHORT, TUSHORT, etc */ int *negative, /* O - is cval negative? */ int *status) /* IO - error status */ /* determine implicit datatype of input integer string. This assumes that the string conforms to the FITS standard for integer keyword value, so may not detect all invalid formats. */ { int ii, len; char *p; if (*status > 0) /* inherit input status value if > 0 */ return(*status); *dtype = 0; /* initialize to NULL */ p = cval; if (*p == '+') { p++; /* ignore leading + sign */ } else if (*p == '-') { p++; *negative = 1; /* this is a negative number */ } if (*p == '0') { while (*p == '0') p++; /* skip leading zeros */ if (*p == 0) { /* the value is a string of 1 or more zeros */ *dtype = TSBYTE; return(*status); } } len = strlen(p); for (ii = 0; ii < len; ii++) { if (!isdigit(*(p+ii))) { *status = BAD_INTKEY; return(*status); } } /* check for unambiguous cases, based on length of the string */ if (len == 0) { *status = VALUE_UNDEFINED; } else if (len < 3) { *dtype = TSBYTE; } else if (len == 4) { *dtype = TSHORT; } else if (len > 5 && len < 10) { *dtype = TINT; } else if (len > 10 && len < 19) { *dtype = TLONGLONG; } else if (len > 19) { *status = BAD_INTKEY; } else { if (!(*negative)) { /* positive integers */ if (len == 3) { if (strcmp(p,"127") <= 0 ) { *dtype = TSBYTE; } else if (strcmp(p,"255") <= 0 ) { *dtype = TBYTE; } else { *dtype = TSHORT; } } else if (len == 5) { if (strcmp(p,"32767") <= 0 ) { *dtype = TSHORT; } else if (strcmp(p,"65535") <= 0 ) { *dtype = TUSHORT; } else { *dtype = TINT; } } else if (len == 10) { if (strcmp(p,"2147483647") <= 0 ) { *dtype = TINT; } else if (strcmp(p,"4294967295") <= 0 ) { *dtype = TUINT; } else { *dtype = TLONGLONG; } } else if (len == 19) { if (strcmp(p,"9223372036854775807") <= 0 ) { *dtype = TLONGLONG; } else { *status = BAD_INTKEY; } } } else { /* negative integers */ if (len == 3) { if (strcmp(p,"128") <= 0 ) { *dtype = TSBYTE; } else { *dtype = TSHORT; } } else if (len == 5) { if (strcmp(p,"32768") <= 0 ) { *dtype = TSHORT; } else { *dtype = TINT; } } else if (len == 10) { if (strcmp(p,"2147483648") <= 0 ) { *dtype = TINT; } else { *dtype = TLONGLONG; } } else if (len == 19) { if (strcmp(p,"9223372036854775808") <= 0 ) { *dtype = TLONGLONG; } else { *status = BAD_INTKEY; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffc2x(const char *cval, /* I - formatted string representation of the value */ char *dtype, /* O - datatype code: C, L, F, I or X */ /* Only one of the following will be defined, depending on datatype */ long *ival, /* O - integer value */ int *lval, /* O - logical value */ char *sval, /* O - string value */ double *dval, /* O - double value */ int *status) /* IO - error status */ /* high level routine to convert formatted character string to its intrinsic data type */ { ffdtyp(cval, dtype, status); /* determine the datatype */ if (*dtype == 'I') ffc2ii(cval, ival, status); else if (*dtype == 'F') ffc2dd(cval, dval, status); else if (*dtype == 'L') ffc2ll(cval, lval, status); else ffc2s(cval, sval, status); /* C and X formats */ return(*status); } /*--------------------------------------------------------------------------*/ int ffc2xx(const char *cval, /* I - formatted string representation of the value */ char *dtype, /* O - datatype code: C, L, F, I or X */ /* Only one of the following will be defined, depending on datatype */ LONGLONG *ival, /* O - integer value */ int *lval, /* O - logical value */ char *sval, /* O - string value */ double *dval, /* O - double value */ int *status) /* IO - error status */ /* high level routine to convert formatted character string to its intrinsic data type */ { ffdtyp(cval, dtype, status); /* determine the datatype */ if (*dtype == 'I') ffc2jj(cval, ival, status); else if (*dtype == 'F') ffc2dd(cval, dval, status); else if (*dtype == 'L') ffc2ll(cval, lval, status); else ffc2s(cval, sval, status); /* C and X formats */ return(*status); } /*--------------------------------------------------------------------------*/ int ffc2i(const char *cval, /* I - string representation of the value */ long *ival, /* O - numerical value of the input string */ int *status) /* IO - error status */ /* convert formatted string to an integer value, doing implicit datatype conversion if necessary. */ { char dtype, sval[81], msg[81]; int lval; double dval; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (cval[0] == '\0') return(*status = VALUE_UNDEFINED); /* null value string */ /* convert the keyword to its native datatype */ ffc2x(cval, &dtype, ival, &lval, sval, &dval, status); if (dtype == 'X' ) { *status = BAD_INTKEY; } else if (dtype == 'C') { /* try reading the string as a number */ if (ffc2dd(sval, &dval, status) <= 0) { if (dval > (double) LONG_MAX || dval < (double) LONG_MIN) *status = NUM_OVERFLOW; else *ival = (long) dval; } } else if (dtype == 'F') { if (dval > (double) LONG_MAX || dval < (double) LONG_MIN) *status = NUM_OVERFLOW; else *ival = (long) dval; } else if (dtype == 'L') { *ival = (long) lval; } if (*status > 0) { *ival = 0; strcpy(msg,"Error in ffc2i evaluating string as an integer: "); strncat(msg,cval,30); ffpmsg(msg); return(*status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffc2j(const char *cval, /* I - string representation of the value */ LONGLONG *ival, /* O - numerical value of the input string */ int *status) /* IO - error status */ /* convert formatted string to a LONGLONG integer value, doing implicit datatype conversion if necessary. */ { char dtype, sval[81], msg[81]; int lval; double dval; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (cval[0] == '\0') return(*status = VALUE_UNDEFINED); /* null value string */ /* convert the keyword to its native datatype */ ffc2xx(cval, &dtype, ival, &lval, sval, &dval, status); if (dtype == 'X' ) { *status = BAD_INTKEY; } else if (dtype == 'C') { /* try reading the string as a number */ if (ffc2dd(sval, &dval, status) <= 0) { if (dval > (double) LONGLONG_MAX || dval < (double) LONGLONG_MIN) *status = NUM_OVERFLOW; else *ival = (LONGLONG) dval; } } else if (dtype == 'F') { if (dval > (double) LONGLONG_MAX || dval < (double) LONGLONG_MIN) *status = NUM_OVERFLOW; else *ival = (LONGLONG) dval; } else if (dtype == 'L') { *ival = (LONGLONG) lval; } if (*status > 0) { *ival = 0; strcpy(msg,"Error in ffc2j evaluating string as a long integer: "); strncat(msg,cval,30); ffpmsg(msg); return(*status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffc2l(const char *cval, /* I - string representation of the value */ int *lval, /* O - numerical value of the input string */ int *status) /* IO - error status */ /* convert formatted string to a logical value, doing implicit datatype conversion if necessary */ { char dtype, sval[81], msg[81]; long ival; double dval; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (cval[0] == '\0') return(*status = VALUE_UNDEFINED); /* null value string */ /* convert the keyword to its native datatype */ ffc2x(cval, &dtype, &ival, lval, sval, &dval, status); if (dtype == 'C' || dtype == 'X' ) *status = BAD_LOGICALKEY; if (*status > 0) { *lval = 0; strcpy(msg,"Error in ffc2l evaluating string as a logical: "); strncat(msg,cval,30); ffpmsg(msg); return(*status); } if (dtype == 'I') { if (ival) *lval = 1; else *lval = 0; } else if (dtype == 'F') { if (dval) *lval = 1; else *lval = 0; } return(*status); } /*--------------------------------------------------------------------------*/ int ffc2r(const char *cval, /* I - string representation of the value */ float *fval, /* O - numerical value of the input string */ int *status) /* IO - error status */ /* convert formatted string to a real float value, doing implicit datatype conversion if necessary */ { char dtype, sval[81], msg[81]; int lval; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (cval[0] == '\0') return(*status = VALUE_UNDEFINED); /* null value string */ ffdtyp(cval, &dtype, status); /* determine the datatype */ if (dtype == 'I' || dtype == 'F') ffc2rr(cval, fval, status); else if (dtype == 'L') { ffc2ll(cval, &lval, status); *fval = (float) lval; } else if (dtype == 'C') { /* try reading the string as a number */ ffc2s(cval, sval, status); ffc2rr(sval, fval, status); } else *status = BAD_FLOATKEY; if (*status > 0) { *fval = 0.; strcpy(msg,"Error in ffc2r evaluating string as a float: "); strncat(msg,cval,30); ffpmsg(msg); return(*status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffc2d(const char *cval, /* I - string representation of the value */ double *dval, /* O - numerical value of the input string */ int *status) /* IO - error status */ /* convert formatted string to a double value, doing implicit datatype conversion if necessary */ { char dtype, sval[81], msg[81]; int lval; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (cval[0] == '\0') return(*status = VALUE_UNDEFINED); /* null value string */ ffdtyp(cval, &dtype, status); /* determine the datatype */ if (dtype == 'I' || dtype == 'F') ffc2dd(cval, dval, status); else if (dtype == 'L') { ffc2ll(cval, &lval, status); *dval = (double) lval; } else if (dtype == 'C') { /* try reading the string as a number */ ffc2s(cval, sval, status); ffc2dd(sval, dval, status); } else *status = BAD_DOUBLEKEY; if (*status > 0) { *dval = 0.; strcpy(msg,"Error in ffc2d evaluating string as a double: "); strncat(msg,cval,30); ffpmsg(msg); return(*status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffc2ii(const char *cval, /* I - string representation of the value */ long *ival, /* O - numerical value of the input string */ int *status) /* IO - error status */ /* convert null-terminated formatted string to an integer value */ { char *loc, msg[81]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); errno = 0; *ival = 0; *ival = strtol(cval, &loc, 10); /* read the string as an integer */ /* check for read error, or junk following the integer */ if (*loc != '\0' && *loc != ' ' ) *status = BAD_C2I; if (errno == ERANGE) { strcpy(msg,"Range Error in ffc2ii converting string to long int: "); strncat(msg,cval,25); ffpmsg(msg); *status = NUM_OVERFLOW; errno = 0; } return(*status); } /*--------------------------------------------------------------------------*/ int ffc2jj(const char *cval, /* I - string representation of the value */ LONGLONG *ival, /* O - numerical value of the input string */ int *status) /* IO - error status */ /* convert null-terminated formatted string to an long long integer value */ { char *loc, msg[81]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); errno = 0; *ival = 0; #if defined(_MSC_VER) /* Microsoft Visual C++ 6.0 does not have the strtoll function */ *ival = _atoi64(cval); loc = (char *) cval; while (*loc == ' ') loc++; /* skip spaces */ if (*loc == '-') loc++; /* skip minus sign */ if (*loc == '+') loc++; /* skip plus sign */ while (isdigit(*loc)) loc++; /* skip digits */ #elif (USE_LL_SUFFIX == 1) *ival = strtoll(cval, &loc, 10); /* read the string as an integer */ #else *ival = strtol(cval, &loc, 10); /* read the string as an integer */ #endif /* check for read error, or junk following the integer */ if (*loc != '\0' && *loc != ' ' ) *status = BAD_C2I; if (errno == ERANGE) { strcpy(msg,"Range Error in ffc2jj converting string to longlong int: "); strncat(msg,cval,25); ffpmsg(msg); *status = NUM_OVERFLOW; errno = 0; } return(*status); } /*--------------------------------------------------------------------------*/ int ffc2ll(const char *cval, /* I - string representation of the value: T or F */ int *lval, /* O - numerical value of the input string: 1 or 0 */ int *status) /* IO - error status */ /* convert null-terminated formatted string to a logical value */ { if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (cval[0] == 'T') *lval = 1; else *lval = 0; /* any character besides T is considered false */ return(*status); } /*--------------------------------------------------------------------------*/ int ffc2s(const char *instr, /* I - null terminated quoted input string */ char *outstr, /* O - null terminated output string without quotes */ int *status) /* IO - error status */ /* convert an input quoted string to an unquoted string by removing the leading and trailing quote character. Also, replace any pairs of single quote characters with just a single quote character (FITS used a pair of single quotes to represent a literal quote character within the string). */ { int jj; size_t len, ii; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (instr[0] != '\'') { if (instr[0] == '\0') { outstr[0] = '\0'; return(*status = VALUE_UNDEFINED); /* null value string */ } else { strcpy(outstr, instr); /* no leading quote, so return input string */ return(*status); } } len = strlen(instr); for (ii=1, jj=0; ii < len; ii++, jj++) { if (instr[ii] == '\'') /* is this the closing quote? */ { if (instr[ii+1] == '\'') /* 2 successive quotes? */ ii++; /* copy only one of the quotes */ else break; /* found the closing quote, so exit this loop */ } outstr[jj] = instr[ii]; /* copy the next character to the output */ } outstr[jj] = '\0'; /* terminate the output string */ if (ii == len) { ffpmsg("This string value has no closing quote (ffc2s):"); ffpmsg(instr); return(*status = 205); } for (jj--; jj >= 0; jj--) /* replace trailing blanks with nulls */ { if (outstr[jj] == ' ') outstr[jj] = 0; else break; } return(*status); } /*--------------------------------------------------------------------------*/ int ffc2rr(const char *cval, /* I - string representation of the value */ float *fval, /* O - numerical value of the input string */ int *status) /* IO - error status */ /* convert null-terminated formatted string to a float value */ { char *loc, msg[81], tval[73]; struct lconv *lcc = 0; static char decimalpt = 0; short *sptr, iret; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (!decimalpt) { /* only do this once for efficiency */ lcc = localeconv(); /* set structure containing local decimal point symbol */ decimalpt = *(lcc->decimal_point); } errno = 0; *fval = 0.; if (strchr(cval, 'D') || decimalpt == ',') { /* strtod expects a comma, not a period, as the decimal point */ strcpy(tval, cval); /* The C language does not support a 'D'; replace with 'E' */ if ((loc = strchr(tval, 'D'))) *loc = 'E'; if (decimalpt == ',') { /* strtod expects a comma, not a period, as the decimal point */ if ((loc = strchr(tval, '.'))) *loc = ','; } *fval = (float) strtod(tval, &loc); /* read the string as an float */ } else { *fval = (float) strtod(cval, &loc); } /* check for read error, or junk following the value */ if (*loc != '\0' && *loc != ' ' ) { strcpy(msg,"Error in ffc2rr converting string to float: "); strncat(msg,cval,30); ffpmsg(msg); *status = BAD_C2F; } sptr = (short *) fval; #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS sptr++; /* point to MSBs */ #endif iret = fnan(*sptr); /* if iret == 1, then the float value is a NaN */ if (errno == ERANGE || (iret == 1) ) { strcpy(msg,"Error in ffc2rr converting string to float: "); strncat(msg,cval,30); ffpmsg(msg); *fval = 0.; *status = NUM_OVERFLOW; errno = 0; } return(*status); } /*--------------------------------------------------------------------------*/ int ffc2dd(const char *cval, /* I - string representation of the value */ double *dval, /* O - numerical value of the input string */ int *status) /* IO - error status */ /* convert null-terminated formatted string to a double value */ { char *loc, msg[81], tval[73]; struct lconv *lcc = 0; static char decimalpt = 0; short *sptr, iret; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (!decimalpt) { /* only do this once for efficiency */ lcc = localeconv(); /* set structure containing local decimal point symbol */ decimalpt = *(lcc->decimal_point); } errno = 0; *dval = 0.; if (strchr(cval, 'D') || decimalpt == ',') { /* need to modify a temporary copy of the string before parsing it */ strcpy(tval, cval); /* The C language does not support a 'D'; replace with 'E' */ if ((loc = strchr(tval, 'D'))) *loc = 'E'; if (decimalpt == ',') { /* strtod expects a comma, not a period, as the decimal point */ if ((loc = strchr(tval, '.'))) *loc = ','; } *dval = strtod(tval, &loc); /* read the string as an double */ } else { *dval = strtod(cval, &loc); } /* check for read error, or junk following the value */ if (*loc != '\0' && *loc != ' ' ) { strcpy(msg,"Error in ffc2dd converting string to double: "); strncat(msg,cval,30); ffpmsg(msg); *status = BAD_C2D; } sptr = (short *) dval; #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS sptr += 3; /* point to MSBs */ #endif iret = dnan(*sptr); /* if iret == 1, then the double value is a NaN */ if (errno == ERANGE || (iret == 1) ) { strcpy(msg,"Error in ffc2dd converting string to double: "); strncat(msg,cval,30); ffpmsg(msg); *dval = 0.; *status = NUM_OVERFLOW; errno = 0; } return(*status); } healpy-1.8.1/cfitsio/testf77.std0000654000175000017530000020130012272000775017070 0ustar zoncaplanck00000000000000SIMPLE = T / file does conform to FITS standard BITPIX = 32 / number of bits per data pixel NAXIS = 2 / number of data axes NAXIS1 = 10 / length of data axis 1 NAXIS2 = 2 / length of data axis 2 EXTEND = T / FITS dataset may contain extensions COMMENT FITS (Flexible Image Transport System) format is defined in 'AstronomyCOMMENT and Astrophysics', volume 376, page 359; bibcode: 2001A&A...376..359H KEY_PREC= 'This keyword was written by fxprec' / comment goes here CARD1 = '12345678901234567890123456789012345678901234567890123456789012345678'CARD2 = '1234567890123456789012345678901234567890123456789012345678901234''67'CARD3 = '1234567890123456789012345678901234567890123456789012345678901234'''''CARD4 = '1234567890123456789012345678901234567890123456789012345678901234567' KEY_PKYS= 'value_string' / fxpkys comment KEY_PKYL= T / fxpkyl comment KEY_PKYJ= 11 / [feet/second/second] fxpkyj comment KEY_PKYF= 12.12121 / fxpkyf comment KEY_PKYE= 1.313131E+01 / fxpkye comment KEY_PKYG= 14.14141414141414 / fxpkyg comment KEY_PKYD= 1.51515151515152E+01 / fxpkyd comment KEY_PKLS= 'This is a very long string value that is continued over more than o&'CONTINUE 'ne keyword.' / fxpkls comment LONGSTRN= 'OGIP 1.0' / The HEASARC Long String Convention may be used.COMMENT This FITS file may contain long string keyword values that are COMMENT This keyword was modified by fxmrec KY_UCRD = 'This keyword was updated by fxucrd' NEWIKYS = 'updated_string' / ikys comment KY_IKYJ = 51 / This is a modified comment KY_IKYL = T / ikyl comment KY_IKYE = -1.3346E+01 / ikye comment KY_IKYD = -1.33456789012346E+01 / modified comment KY_IKYF = -13.3456 / ikyf comment KY_IKYG = -13.3456789012346 / ikyg comment COMMENT character at the end of each substring which is then continued COMMENT on the next keyword which has the name CONTINUE. KEY_PKYT= 12345678.1234567890123456 / fxpkyt comment COMMENT This keyword was written by fxpcom. KY_PKNS1= 'first string' / fxpkns comment KY_PKNS2= 'second string' / fxpkns comment KY_PKNS3= ' ' / fxpkns comment KY_PKNL1= T / fxpknl comment KY_PKNL2= F / fxpknl comment KY_PKNL3= T / fxpknl comment KY_PKNJ1= 11 / fxpknj comment KY_PKNJ2= 12 / fxpknj comment KY_PKNJ3= 13 / fxpknj comment KY_PKNF1= 12.12121 / fxpknf comment KY_PKNF2= 13.13131 / fxpknf comment KY_PKNF3= 14.14141 / fxpknf comment KY_PKNE1= 1.313131E+01 / fxpkne comment KY_PKNE2= 1.414141E+01 / fxpkne comment KY_PKNE3= 1.515152E+01 / fxpkne comment KY_PKNG1= 14.1414141414141 / fxpkng comment KY_PKNG2= 15.1515151515152 / fxpkng comment KY_PKNG3= 16.1616161616162 / fxpkng comment KY_PKND1= 1.51515151515152E+01 / fxpknd comment KY_PKND2= 1.61616161616162E+01 / fxpknd comment KY_PKND3= 1.71717171717172E+01 / fxpknd comment TSTRING = '1 ' / tstring comment TLOGICAL= T / tlogical comment TBYTE = 11 / tbyte comment TSHORT = 21 / tshort comment TINT = 31 / tint comment TLONG = 41 / tlong comment TFLOAT = 4.200000E+01 / tfloat comment TDOUBLE = 8.20000000000000E+01 / tdouble comment BLANK = -99 / value to use for undefined pixels END ÿÿÿÿÿÿÿÿÿ ÿÿÿ ÿÿÿÿÿÿXTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / 8-bit bytes NAXIS = 2 / 2-dimensional binary table NAXIS1 = 61 / width of table in bytes NAXIS2 = 20 / number of rows in table PCOUNT = 0 / size of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 10 / number of fields in each row TTYPE1 = 'Avalue ' / label for field 1 TFORM1 = '15A ' / data format of field: ASCII Character TTYPE2 = 'Lvalue ' / label for field 2 TFORM2 = '1L ' / data format of field: 1-byte LOGICAL TUNIT2 = 'm**2 ' / physical unit of field TTYPE3 = 'Xvalue ' / label for field 3 TFORM3 = '16X ' / data format of field: BIT TUNIT3 = 'cm ' / physical unit of field TTYPE4 = 'Bvalue ' / label for field 4 TFORM4 = '1B ' / data format of field: BYTE TUNIT4 = 'erg/s ' / physical unit of field TTYPE5 = 'Ivalue ' / label for field 5 TFORM5 = '1I ' / data format of field: 2-byte INTEGER TUNIT5 = 'km/s ' / physical unit of field TTYPE6 = 'Jvalue ' / label for field 6 TFORM6 = '1J ' / data format of field: 4-byte INTEGER TTYPE7 = 'Evalue ' / label for field 7 TFORM7 = '1E ' / data format of field: 4-byte REAL TTYPE8 = 'Dvalue ' / label for field 8 TFORM8 = '1D ' / data format of field: 8-byte DOUBLE TTYPE9 = 'Cvalue ' / label for field 9 TFORM9 = '1C ' / data format of field: COMPLEX TTYPE10 = 'Mvalue ' / label for field 10 TFORM10 = '1M ' / data format of field: DOUBLE COMPLEX EXTNAME = 'Test-BINTABLE' / name of this binary table extension TNULL4 = 77 / value for undefined pixels TNULL5 = 77 / value for undefined pixels TNULL6 = 77 / value for undefined pixels TSCAL4 = 1000 / scaling factor TSCAL5 = 1 / scaling factor TSCAL6 = 100 / scaling factor TZERO4 = 0 / scaling offset TZERO5 = 32768 / scaling offset TZERO6 = 100 / scaling offset END €ÿÿÿÿƒè §c!GBÿŽMMMXTENSION= 'IMAGE ' / IMAGE extension BITPIX = -32 / number of bits per data pixel NAXIS = 2 / number of data axes NAXIS1 = 15 / length of data axis 1 NAXIS2 = 25 / length of data axis 2 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 NEW_KEY = 'written by fxprec' / to change checksum END ?€@@@@€@ @À@àAAA A0A@APA`A A0A@APA`ApA€AˆAA˜A A¨A°A¸AÀA A¨A°A¸AÀAÈAÐAØAàAèAðAøBBBAðAøBBBB BBBBB B$B(B,B0B B$B(B,¿€ÀÀ@À€À ÀÀÀàÁÁBXBHBLBPBTÁ Á0Á@ÁPÁ`ÁpÁ€ÁˆÁÁ˜B€BpBtBxB|Á Á¨Á°Á¸ÁÀÁÈÁÐÁØÁàÁèB”BŒBŽBB’ÁðÁøÂ ÂÂÂÂB¨B B¢B¤B¦Â Â$Â(Â,Â0Â4Â8Â<Â@ÂDB¼B´B¶B¸BºÂHÂLÂPÂTÂXÂ\Â`ÂdÂhÂlBÐBÈBÊBÌBÎÂpÂtÂxÂ|€‚„†ˆŠBäBÜBÞBàB⌎’”–˜šœžBøBðBòBôBö ¢¤¦¨ª¬®°²CCCCC´¶¸º¼¾ÂÀÂÂÂÄÂÆCC C CCCCCCCCCCCCCCCCCCCCCCCC C!C"C#C$C C!C"C#C$C%C&C'C(C)C*C+C,C-C.C*C+C,C-C.C/C0C1C2C3C4C5C6C7C8C4C5C6C7C8C9C:C;C<C=C>C?C@CACBC>C?C@CACBCCCDCECFCGCHCICJCKCLCHCICJCKCLCMCNCOCPCQCRCSCTCUCVCRCSCTCUCVCWCXCYCZC[C\C]C^C_C`C\C]C^C_C`CaCbCcCdCeCfCgChCiCjCfCgChCiCjCkClCmCnCoCpCqCrCsCtCpCqCrCsCtCuCvCwCxCyCzC{C|C}C~XTENSION= 'TABLE ' / ASCII table extension BITPIX = 8 / 8-bit ASCII characters NAXIS = 2 / 2-dimensional ASCII table NAXIS1 = 76 / width of table in characters NAXIS2 = 12 / number of rows in table PCOUNT = 0 / no group parameters (required keyword) GCOUNT = 1 / one data group (required keyword) TFIELDS = 5 / number of fields in each row TTYPE1 = 'Name ' / label for field 1 TBCOL1 = 1 / beginning column of field 1 TFORM1 = 'A15 ' / Fortran-77 format of field TTYPE2 = 'Ivalue ' / label for field 2 TBCOL2 = 17 / beginning column of field 2 TFORM2 = 'I10 ' / Fortran-77 format of field TUNIT2 = 'm**2 ' / physical unit of field TTYPE3 = 'Evalue ' / label for field 4 TBCOL3 = 28 / beginning column of field 4 TFORM3 = 'E12.5 ' / Fortran-77 format of field TUNIT3 = 'erg/s ' / physical unit of field TTYPE4 = 'Dvalue ' / label for field 5 TBCOL4 = 41 / beginning column of field 5 TFORM4 = 'D21.14 ' / Fortran-77 format of field TUNIT4 = 'km/s ' / physical unit of field EXTNAME = 'Test-ASCII' / name of this ASCII table extension TNULL1 = 'null1 ' / value for undefined pixels TNULL2 = 'null2 ' / value for undefined pixels TNULL3 = 'null4 ' / value for undefined pixels TNULL4 = 'null5 ' / value for undefined pixels TTYPE5 = 'INSERT_COL' / label for field TFORM5 = 'F14.6 ' / format of field TBCOL5 = 63 / beginning column of field END first string 1 1.00000E+00 1.00000000000000E+00 second string 2 2.00000E+00 2.00000000000000E+00 3 3.00000E+00 3.00000000000000E+00 null1 4 4.00000E+00 4.00000000000000E+00 5 5.00000E+00 5.00000000000000E+00 6 6.00000E+00 6.00000000000000E+00 9 9.00000E+00 9.00000000000000E+00 10 1.00000E+01 1.00000000000000E+01 null2 null4 null5 XTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / 8-bit bytes NAXIS = 2 / 2-dimensional binary table NAXIS1 = 61 / width of table in bytes NAXIS2 = 22 / number of rows in table PCOUNT = 0 / size of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 10 / number of fields in each row TTYPE1 = 'Avalue ' / label for field 1 TFORM1 = '15A ' / data format of field: ASCII Character TTYPE2 = 'Lvalue ' / label for field 2 TFORM2 = '1L ' / data format of field: 1-byte LOGICAL TUNIT2 = 'm**2 ' / physical unit of field TTYPE3 = 'Xvalue ' / label for field 3 TFORM3 = '16X ' / data format of field: BIT TUNIT3 = 'cm ' / physical unit of field TTYPE4 = 'Bvalue ' / label for field 4 TFORM4 = '1B ' / data format of field: BYTE TUNIT4 = 'erg/s ' / physical unit of field TTYPE5 = 'Ivalue ' / label for field 5 TFORM5 = '1I ' / data format of field: 2-byte INTEGER TUNIT5 = 'km/s ' / physical unit of field TTYPE6 = 'Evalue ' / label for field 7 TFORM6 = '1E ' / data format of field: 4-byte REAL TTYPE7 = 'Dvalue ' / label for field 8 TFORM7 = '1D ' / data format of field: 8-byte DOUBLE TTYPE9 = 'Cvalue ' / label for field 9 TFORM9 = '1C ' / data format of field: COMPLEX TTYPE10 = 'Mvalue ' / label for field 10 TFORM10 = '1M ' / data format of field: DOUBLE COMPLEX EXTNAME = 'Test-BINTABLE' / name of this binary table extension TNULL4 = 99 / value for undefined pixels TNULL5 = 99 / value for undefined pixels TDIM3 = '(1,2,8) ' / size of the multidimensional array KEY_PREC= 'This keyword was written by f_prec' / comment here TTYPE8 = 'INSERT_COL' / label for field TFORM8 = '1E ' / format of field END first string FLp?€?ðÿÿÿÿ?€À?ðÀsecond string Tð|@@ÿÿÿÿ@@À€@Àÿÿÿÿÿÿÿÿÿÿÿÿ F@@@ÿÿÿÿ@ ÀÀ@À FÿüÀ€Àÿÿÿÿ@àÁ@À T@ @ÿÿÿÿAÁ @"À$TÿúÀÀÀÿÿÿÿA0Á@@&À(F A@"ÿÿÿÿAˆÁ@1À2TÿöÁ À$A˜Á @3À4ccÿÿÿÿÿÿÿÿÿÿÿÿT A@@(FccÿÿÿÿÿÿÿÿÿÿÿÿFÿòÁ`À,FccÿÿÿÿÿÿÿÿÿÿÿÿFÿðÁ€À0TccÿÿÿÿÿÿÿÿÿÿÿÿTÿîÁÀ2TccÿÿÿÿÿÿÿÿÿÿÿÿTÿìÁ À4FccÿÿÿÿÿÿÿÿÿÿÿÿXTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / 8-bit bytes NAXIS = 2 / 2-dimensional binary table NAXIS1 = 80 / width of table in bytes NAXIS2 = 20 / number of rows in table PCOUNT = 4446 / size of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 10 / number of fields in each row TTYPE1 = 'Avalue ' / label for field 1 TFORM1 = '1PA(20) ' / data format of field: variable length array TTYPE2 = 'Lvalue ' / label for field 2 TFORM2 = '1PL(20) ' / data format of field: variable length array TUNIT2 = 'm**2 ' / physical unit of field TTYPE3 = 'Xvalue ' / label for field 3 TFORM3 = '1PB(3) ' / data format of field: variable length array TUNIT3 = 'cm ' / physical unit of field TTYPE4 = 'Bvalue ' / label for field 4 TFORM4 = '1PB(20) ' / data format of field: variable length array TUNIT4 = 'erg/s ' / physical unit of field TTYPE5 = 'Ivalue ' / label for field 5 TFORM5 = '1PI(20) ' / data format of field: variable length array TUNIT5 = 'km/s ' / physical unit of field TTYPE6 = 'Jvalue ' / label for field 6 TFORM6 = '1PJ(20) ' / data format of field: variable length array TTYPE7 = 'Evalue ' / label for field 7 TFORM7 = '1PE(20) ' / data format of field: variable length array TTYPE8 = 'Dvalue ' / label for field 8 TFORM8 = '1PD(20) ' / data format of field: variable length array TTYPE9 = 'Cvalue ' / label for field 9 TFORM9 = '1PC(0) ' / data format of field: variable length array TTYPE10 = 'Mvalue ' / label for field 10 TFORM10 = '1PM(0) ' / data format of field: variable length array EXTNAME = 'Test-BINTABLE' / name of this binary table extension TNULL4 = 88 / value for undefined pixels TNULL5 = 88 / value for undefined pixels TNULL6 = 88 / value for undefined pixels END  !)1ADGHKQ]i…‰ŠŽ–¦¶ÖÛàáæð@FLMS_w¿ÆÍÎÕãÿS[cdl|œ¼ ü    + O s » ÅÏ Ñ Û ï  ?  𥠧 ² È ô  x „ ’ ž ¶ æ  v ƒ ’ Ÿ ¹ í !‰—¥§µÑ A±ÀÏÑàþ : v î þ    @ € À @ Q b e v ˜ Ü  ¨ º Ì Ï á  M •%8KNa‡Ó·Ëßâön¾F?€?ðabT@XXXÿÿÿÿ@ÿÿÿÿÿÿÿÿ@abcFF@XXX?€ÿÿÿÿ@@?ðÿÿÿÿÿÿÿÿ@abcdFTF@XXX?€@ÿÿÿÿ@€?ð@ÿÿÿÿÿÿÿÿ@abcdeFTFTHXXX?€@@@ÿÿÿÿ@ ?ð@@ÿÿÿÿÿÿÿÿ@abcdefFTFFTLXXX?€@@@@€ÿÿÿÿ@À?ð@@@ÿÿÿÿÿÿÿÿ@abcdefgFTFFTFLXXX?€@@@@€@ ÿÿÿÿ@à?ð@@@@ÿÿÿÿÿÿÿÿ@abcdefghFTFFTTFLXXX?€@@@@€@ @ÀÿÿÿÿA?ð@@@@@ÿÿÿÿÿÿÿÿ@ abcdefghiFTFFTTFFLX X X ?€@@@@€@ @À@àÿÿÿÿA?ð@@@@@@ÿÿÿÿÿÿÿÿ@"abcdefghijFTFFTTFFTL@X X X ?€@@@@€@ @À@àAÿÿÿÿA ?ð@@@@@@@ ÿÿÿÿÿÿÿÿ@$abcdefghijkFTFFTTFFFTL` X  X  X ?€@@@@€@ @À@àAAÿÿÿÿA0?ð@@@@@@@ @"ÿÿÿÿÿÿÿÿ@&abcdefghijklFTFFTTFFFTTLp X  X  X ?€@@@@€@ @À@àAAA ÿÿÿÿA@?ð@@@@@@@ @"@$ÿÿÿÿÿÿÿÿ@(abcdefghijklmFTFFTTFFFTTFLp X  X  X ?€@@@@€@ @À@àAAA A0ÿÿÿÿAP?ð@@@@@@@ @"@$@&ÿÿÿÿÿÿÿÿ@*abcdefghijklmnFTFFTTFFFTTTFLp X X X?€@@@@€@ @À@àAAA A0A@ÿÿÿÿA`?ð@@@@@@@ @"@$@&@(ÿÿÿÿÿÿÿÿ@,abcdefghijklmnoFTFFTTFFFTTTFFLp X X X?€@@@@€@ @À@àAAA A0A@APÿÿÿÿAp?ð@@@@@@@ @"@$@&@(@*ÿÿÿÿÿÿÿÿ@.abcdefghijklmnopFTFFTTFFFTTTFFFLp X X X?€@@@@€@ @À@àAAA A0A@APA`ÿÿÿÿA€?ð@@@@@@@ @"@$@&@(@*@,ÿÿÿÿÿÿÿÿ@0abcdefghijklmnopqFTFFTTFFFTTTFFFTLp€ X X X?€@@@@€@ @À@àAAA A0A@APA`ApÿÿÿÿAˆ?ð@@@@@@@ @"@$@&@(@*@,@.ÿÿÿÿÿÿÿÿ@1abcdefghijklmnopqrFTFFTTFFFTTTFFFFTLpÀ X X X?€@@@@€@ @À@àAAA A0A@APA`ApA€ÿÿÿÿA?ð@@@@@@@ @"@$@&@(@*@,@.@0ÿÿÿÿÿÿÿÿ@2abcdefghijklmnopqrsFTFFTTFFFTTTFFFFTTLpà X X X?€@@@@€@ @À@àAAA A0A@APA`ApA€AˆÿÿÿÿA˜?ð@@@@@@@ @"@$@&@(@*@,@.@0@1ÿÿÿÿÿÿÿÿ@3abcdefghijklmnopqrstFTFFTTFFFTTTFFFFTTTLpð X X X?€@@@@€@ @À@àAAA A0A@APA`ApA€AˆAÿÿÿÿA ?ð@@@@@@@ @"@$@&@(@*@,@.@0@1@2ÿÿÿÿÿÿÿÿ@4XTENSION= 'IMAGE ' / IMAGE extension BITPIX = 32 / number of bits per data pixel NAXIS = 2 / number of data axes NAXIS1 = 10 / length of data axis 1 NAXIS2 = 2 / length of data axis 2 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 CRVAL1 = 4.5830000000E+01 / comment CRVAL2 = 6.3570000000E+01 / comment CRPIX1 = 2.5600000000E+02 / comment CRPIX2 = 2.5700000000E+02 / comment CDELT1 = -2.7777700000E-03 / comment CDELT2 = 2.7777700000E-03 / comment CTYPE1 = 'RA---TAN' / comment CTYPE2 = 'DEC--TAN' / comment END  XTENSION= 'TABLE ' / ASCII table extension BITPIX = 8 / 8-bit ASCII characters NAXIS = 2 / 2-dimensional ASCII table NAXIS1 = 80 / width of table in characters NAXIS2 = 11 / number of rows in table PCOUNT = 0 / no group parameters (required keyword) GCOUNT = 1 / one data group (required keyword) TFIELDS = 5 / number of fields in each row TTYPE1 = 'Name ' / label for field 1 TBCOL1 = 1 / beginning column of field 1 TFORM1 = 'A15 ' / Fortran-77 format of field TTYPE2 = 'Ivalue ' / label for field 2 TBCOL2 = 17 / beginning column of field 2 TFORM2 = 'I11 ' / Fortran-77 format of field TUNIT2 = 'm**2 ' / physical unit of field TTYPE3 = 'Fvalue ' / label for field 3 TBCOL3 = 29 / beginning column of field 3 TFORM3 = 'F15.6 ' / Fortran-77 format of field TUNIT3 = 'cm ' / physical unit of field TTYPE4 = 'Evalue ' / label for field 4 TBCOL4 = 45 / beginning column of field 4 TFORM4 = 'E13.5 ' / Fortran-77 format of field TUNIT4 = 'erg/s ' / physical unit of field TTYPE5 = 'Dvalue ' / label for field 5 TBCOL5 = 59 / beginning column of field 5 TFORM5 = 'D22.14 ' / Fortran-77 format of field TUNIT5 = 'km/s ' / physical unit of field EXTNAME = 'new_table' / name of this ASCII table extension END first string 0 0.000000 0.00000E+00 0.00000000000000E+00second string 3 3.000000 3.00000E+00 3.00000000000000E+00 6 6.000000 6.00000E+00 6.00000000000000E+00 9 9.000000 9.00000E+00 9.00000000000000E+00 12 12.000000 1.20000E+01 1.20000000000000E+01 15 15.000000 1.50000E+01 1.50000000000000E+01 18 18.000000 1.80000E+01 1.80000000000000E+01 21 21.000000 2.10000E+01 2.10000000000000E+01 24 24.000000 2.40000E+01 2.40000000000000E+01 27 27.000000 2.70000E+01 2.70000000000000E+01 healpy-1.8.1/cfitsio/License.txt0000654000175000017530000000260212272000775017200 0ustar zoncaplanck00000000000000Copyright (Unpublished--all rights reserved under the copyright laws of the United States), U.S. Government as represented by the Administrator of the National Aeronautics and Space Administration. No copyright is claimed in the United States under Title 17, U.S. Code. Permission to freely use, copy, modify, and distribute this software and its documentation without fee is hereby granted, provided that this copyright notice and disclaimer of warranty appears in all copies. DISCLAIMER: THE SOFTWARE IS PROVIDED 'AS IS' WITHOUT ANY WARRANTY OF ANY KIND, EITHER EXPRESSED, IMPLIED, OR STATUTORY, INCLUDING, BUT NOT LIMITED TO, ANY WARRANTY THAT THE SOFTWARE WILL CONFORM TO SPECIFICATIONS, ANY IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND FREEDOM FROM INFRINGEMENT, AND ANY WARRANTY THAT THE DOCUMENTATION WILL CONFORM TO THE SOFTWARE, OR ANY WARRANTY THAT THE SOFTWARE WILL BE ERROR FREE. IN NO EVENT SHALL NASA BE LIABLE FOR ANY DAMAGES, INCLUDING, BUT NOT LIMITED TO, DIRECT, INDIRECT, SPECIAL OR CONSEQUENTIAL DAMAGES, ARISING OUT OF, RESULTING FROM, OR IN ANY WAY CONNECTED WITH THIS SOFTWARE, WHETHER OR NOT BASED UPON WARRANTY, CONTRACT, TORT , OR OTHERWISE, WHETHER OR NOT INJURY WAS SUSTAINED BY PERSONS OR PROPERTY OR OTHERWISE, AND WHETHER OR NOT LOSS WAS SUSTAINED FROM, OR AROSE OUT OF THE RESULTS OF, OR USE OF, THE SOFTWARE OR SERVICES PROVIDED HEREUNDER. healpy-1.8.1/cfitsio/eval_tab.h0000654000175000017530000000154712272000775017012 0ustar zoncaplanck00000000000000typedef union { int Node; /* Index of Node */ double dbl; /* real value */ long lng; /* integer value */ char log; /* logical value */ char str[MAX_STRLEN]; /* string value */ } FFSTYPE; #define BOOLEAN 258 #define LONG 259 #define DOUBLE 260 #define STRING 261 #define BITSTR 262 #define FUNCTION 263 #define BFUNCTION 264 #define IFUNCTION 265 #define GTIFILTER 266 #define REGFILTER 267 #define COLUMN 268 #define BCOLUMN 269 #define SCOLUMN 270 #define BITCOL 271 #define ROWREF 272 #define NULLREF 273 #define SNULLREF 274 #define OR 275 #define AND 276 #define EQ 277 #define NE 278 #define GT 279 #define LT 280 #define LTE 281 #define GTE 282 #define POWER 283 #define NOT 284 #define INTCAST 285 #define FLTCAST 286 #define UMINUS 287 #define ACCUM 288 #define DIFF 289 extern FFSTYPE fflval; healpy-1.8.1/cfitsio/eval.l0000654000175000017530000003743012272000775016170 0ustar zoncaplanck00000000000000%{ /************************************************************************/ /* */ /* CFITSIO Lexical Parser */ /* */ /* This file is one of 3 files containing code which parses an */ /* arithmetic expression and evaluates it in the context of an input */ /* FITS file table extension. The CFITSIO lexical parser is divided */ /* into the following 3 parts/files: the CFITSIO "front-end", */ /* eval_f.c, contains the interface between the user/CFITSIO and the */ /* real core of the parser; the FLEX interpreter, eval_l.c, takes the */ /* input string and parses it into tokens and identifies the FITS */ /* information required to evaluate the expression (ie, keywords and */ /* columns); and, the BISON grammar and evaluation routines, eval_y.c, */ /* receives the FLEX output and determines and performs the actual */ /* operations. The files eval_l.c and eval_y.c are produced from */ /* running flex and bison on the files eval.l and eval.y, respectively. */ /* (flex and bison are available from any GNU archive: see www.gnu.org) */ /* */ /* The grammar rules, rather than evaluating the expression in situ, */ /* builds a tree, or Nodal, structure mapping out the order of */ /* operations and expression dependencies. This "compilation" process */ /* allows for much faster processing of multiple rows. This technique */ /* was developed by Uwe Lammers of the XMM Science Analysis System, */ /* although the CFITSIO implementation is entirely code original. */ /* */ /* */ /* Modification History: */ /* */ /* Kent Blackburn c1992 Original parser code developed for the */ /* FTOOLS software package, in particular, */ /* the fselect task. */ /* Kent Blackburn c1995 BIT column support added */ /* Peter D Wilson Feb 1998 Vector column support added */ /* Peter D Wilson May 1998 Ported to CFITSIO library. User */ /* interface routines written, in essence */ /* making fselect, fcalc, and maketime */ /* capabilities available to all tools */ /* via single function calls. */ /* Peter D Wilson Jun 1998 Major rewrite of parser core, so as to */ /* create a run-time evaluation tree, */ /* inspired by the work of Uwe Lammers, */ /* resulting in a speed increase of */ /* 10-100 times. */ /* Peter D Wilson Jul 1998 gtifilter(a,b,c,d) function added */ /* Peter D Wilson Aug 1998 regfilter(a,b,c,d) function added */ /* Peter D Wilson Jul 1999 Make parser fitsfile-independent, */ /* allowing a purely vector-based usage */ /* */ /************************************************************************/ #include #include #include #ifdef sparc #include #else #include #endif #include "eval_defs.h" ParseData gParse; /* Global structure holding all parser information */ /***** Internal functions *****/ int yyGetVariable( char *varName, YYSTYPE *varVal ); static int find_variable( char *varName ); static int expr_read( char *buf, int nbytes ); /***** Definitions *****/ #define YY_NO_UNPUT /* Don't include YYUNPUT function */ #define YY_NEVER_INTERACTIVE 1 #define MAXCHR 256 #define MAXBIT 128 #define OCT_0 "000" #define OCT_1 "001" #define OCT_2 "010" #define OCT_3 "011" #define OCT_4 "100" #define OCT_5 "101" #define OCT_6 "110" #define OCT_7 "111" #define OCT_X "xxx" #define HEX_0 "0000" #define HEX_1 "0001" #define HEX_2 "0010" #define HEX_3 "0011" #define HEX_4 "0100" #define HEX_5 "0101" #define HEX_6 "0110" #define HEX_7 "0111" #define HEX_8 "1000" #define HEX_9 "1001" #define HEX_A "1010" #define HEX_B "1011" #define HEX_C "1100" #define HEX_D "1101" #define HEX_E "1110" #define HEX_F "1111" #define HEX_X "xxxx" /* MJT - 13 June 1996 read from buffer instead of stdin (as per old ftools.skel) */ #undef YY_INPUT #define YY_INPUT(buf,result,max_size) \ if ( (result = expr_read( (char *) buf, max_size )) < 0 ) \ YY_FATAL_ERROR( "read() in flex scanner failed" ); %} bit ([bB][01xX]+) oct ([oO][01234567xX]+) hex ([hH][0123456789aAbBcCdDeEfFxX]+) integer [0-9]+ boolean (t|f|T|F) real ([0-9]*"."[0-9]+)|([0-9]*"."*[0-9]+[eEdD][+-]?[0-9]+)|([0-9]*".") constant ("#"[a-zA-Z0-9_]+)|("#""$"[^\n]*"$") string ([\"][^\"\n]*[\"])|([\'][^\'\n]*[\']) variable ([a-zA-Z_][a-zA-Z0-9_]*)|("$"[^$\n]*"$") function [a-zA-Z][a-zA-Z0-9]+"(" intcast ("(int)"|"(INT)") fltcast ("(float)"|"(FLOAT)"|"(double)"|"(DOUBLE)") power ("^"|"**") not ("!"|".not."|".NOT."|"not."|"NOT.") or ("||"|".or."|".OR."|"or."|"OR.") and ("&&"|".and."|".AND."|"and."|"AND.") equal ("=="|".eq."|".EQ."|"eq."|"EQ.") not_equal ("!="|".ne."|".NE."|"ne."|"NE.") greater (">"|".gt."|".GT."|"gt."|"GT.") lesser ("<"|".lt."|".LT."|"lt."|"LT.") greater_eq (">="|"=>"|".ge."|".GE."|"ge."|"GE.") lesser_eq ("<="|"=<"|".le."|".LE."|"le."|"LE.") nl \n %% [ \t]+ ; {bit} { int len; len = strlen(yytext); while (yytext[len] == ' ') len--; len = len - 1; strncpy(yylval.str,&yytext[1],len); yylval.str[len] = '\0'; return( BITSTR ); } {oct} { int len; char tmpstring[256]; char bitstring[256]; len = strlen(yytext); if (len >= 256) { char errMsg[100]; gParse.status = PARSE_SYNTAX_ERR; strcpy (errMsg,"Bit string exceeds maximum length: '"); strncat(errMsg, &(yytext[0]), 20); strcat (errMsg,"...'"); ffpmsg (errMsg); len = 0; } else { while (yytext[len] == ' ') len--; len = len - 1; strncpy(tmpstring,&yytext[1],len); } tmpstring[len] = '\0'; bitstring[0] = '\0'; len = 0; while ( tmpstring[len] != '\0') { switch ( tmpstring[len] ) { case '0': strcat(bitstring,OCT_0); break; case '1': strcat(bitstring,OCT_1); break; case '2': strcat(bitstring,OCT_2); break; case '3': strcat(bitstring,OCT_3); break; case '4': strcat(bitstring,OCT_4); break; case '5': strcat(bitstring,OCT_5); break; case '6': strcat(bitstring,OCT_6); break; case '7': strcat(bitstring,OCT_7); break; case 'x': case 'X': strcat(bitstring,OCT_X); break; } len++; } strcpy( yylval.str, bitstring ); return( BITSTR ); } {hex} { int len; char tmpstring[256]; char bitstring[256]; len = strlen(yytext); if (len >= 256) { char errMsg[100]; gParse.status = PARSE_SYNTAX_ERR; strcpy (errMsg,"Hex string exceeds maximum length: '"); strncat(errMsg, &(yytext[0]), 20); strcat (errMsg,"...'"); ffpmsg (errMsg); len = 0; } else { while (yytext[len] == ' ') len--; len = len - 1; strncpy(tmpstring,&yytext[1],len); } tmpstring[len] = '\0'; bitstring[0] = '\0'; len = 0; while ( tmpstring[len] != '\0') { switch ( tmpstring[len] ) { case '0': strcat(bitstring,HEX_0); break; case '1': strcat(bitstring,HEX_1); break; case '2': strcat(bitstring,HEX_2); break; case '3': strcat(bitstring,HEX_3); break; case '4': strcat(bitstring,HEX_4); break; case '5': strcat(bitstring,HEX_5); break; case '6': strcat(bitstring,HEX_6); break; case '7': strcat(bitstring,HEX_7); break; case '8': strcat(bitstring,HEX_8); break; case '9': strcat(bitstring,HEX_9); break; case 'a': case 'A': strcat(bitstring,HEX_A); break; case 'b': case 'B': strcat(bitstring,HEX_B); break; case 'c': case 'C': strcat(bitstring,HEX_C); break; case 'd': case 'D': strcat(bitstring,HEX_D); break; case 'e': case 'E': strcat(bitstring,HEX_E); break; case 'f': case 'F': strcat(bitstring,HEX_F); break; case 'x': case 'X': strcat(bitstring,HEX_X); break; } len++; } strcpy( yylval.str, bitstring ); return( BITSTR ); } {integer} { yylval.lng = atol(yytext); return( LONG ); } {boolean} { if ((yytext[0] == 't') || (yytext[0] == 'T')) yylval.log = 1; else yylval.log = 0; return( BOOLEAN ); } {real} { yylval.dbl = atof(yytext); return( DOUBLE ); } {constant} { if( !strcasecmp(yytext,"#PI") ) { yylval.dbl = (double)(4) * atan((double)(1)); return( DOUBLE ); } else if( !strcasecmp(yytext,"#E") ) { yylval.dbl = exp((double)(1)); return( DOUBLE ); } else if( !strcasecmp(yytext,"#DEG") ) { yylval.dbl = ((double)4)*atan((double)1)/((double)180); return( DOUBLE ); } else if( !strcasecmp(yytext,"#ROW") ) { return( ROWREF ); } else if( !strcasecmp(yytext,"#NULL") ) { return( NULLREF ); } else if( !strcasecmp(yytext,"#SNULL") ) { return( SNULLREF ); } else { int len; if (yytext[1] == '$') { len = strlen(yytext) - 3; yylval.str[0] = '#'; strncpy(yylval.str+1,&yytext[2],len); yylval.str[len+1] = '\0'; yytext = yylval.str; } return( (*gParse.getData)(yytext, &yylval) ); } } {string} { int len; len = strlen(yytext) - 2; if (len >= MAX_STRLEN) { char errMsg[100]; gParse.status = PARSE_SYNTAX_ERR; strcpy (errMsg,"String exceeds maximum length: '"); strncat(errMsg, &(yytext[1]), 20); strcat (errMsg,"...'"); ffpmsg (errMsg); len = 0; } else { strncpy(yylval.str,&yytext[1],len); } yylval.str[len] = '\0'; return( STRING ); } {variable} { int len,type; if (yytext[0] == '$') { len = strlen(yytext) - 2; strncpy(yylval.str,&yytext[1],len); yylval.str[len] = '\0'; yytext = yylval.str; } type = yyGetVariable(yytext, &yylval); return( type ); } {function} { char *fname; int len=0; fname = &yylval.str[0]; while( (fname[len]=toupper(yytext[len])) ) len++; if( FSTRCMP(fname,"BOX(")==0 || FSTRCMP(fname,"CIRCLE(")==0 || FSTRCMP(fname,"ELLIPSE(")==0 || FSTRCMP(fname,"NEAR(")==0 || FSTRCMP(fname,"ISNULL(")==0 ) /* Return type is always boolean */ return( BFUNCTION ); else if( FSTRCMP(fname,"GTIFILTER(")==0 ) return( GTIFILTER ); else if( FSTRCMP(fname,"REGFILTER(")==0 ) return( REGFILTER ); else if( FSTRCMP(fname,"STRSTR(")==0 ) return( IFUNCTION ); /* Returns integer */ else return( FUNCTION ); } {intcast} { return( INTCAST ); } {fltcast} { return( FLTCAST ); } {power} { return( POWER ); } {not} { return( NOT ); } {or} { return( OR ); } {and} { return( AND ); } {equal} { return( EQ ); } {not_equal} { return( NE ); } {greater} { return( GT ); } {lesser} { return( LT ); } {greater_eq} { return( GTE ); } {lesser_eq} { return( LTE ); } {nl} { return( '\n' ); } . { return( yytext[0] ); } %% int yywrap() { /* MJT -- 13 June 1996 Supplied for compatibility with pre-2.5.1 versions of flex which do not recognize %option noyywrap */ return(1); } /* expr_read is lifted from old ftools.skel. Now we can use any version of flex with no .skel file necessary! MJT - 13 June 1996 keep a memory of how many bytes have been read previously, so that an unlimited-sized buffer can be supported. PDW - 28 Feb 1998 */ static int expr_read(char *buf, int nbytes) { int n; n = 0; if( !gParse.is_eobuf ) { do { buf[n++] = gParse.expr[gParse.index++]; } while ((nlng = varNum; } return( type ); } static int find_variable(char *varName) { int i; if( gParse.nCols ) for( i=0; i c2) return(1); if (c1 == 0) return(0); s1++; s2++; } } int strncasecmp(const char *s1, const char *s2, size_t n) { char c1, c2; for (; n-- ;) { c1 = toupper( *s1 ); c2 = toupper( *s2 ); if (c1 < c2) return(-1); if (c1 > c2) return(1); if (c1 == 0) return(0); s1++; s2++; } return(0); } #endif healpy-1.8.1/cfitsio/fpack.h0000654000175000017530000001576312272000775016326 0ustar zoncaplanck00000000000000/* used by FPACK and FUNPACK * R. Seaman, NOAO * W. Pence, NASA/GSFC */ #include #include #include /* not needed any more */ /* #include */ /* #include */ /* #include */ #define FPACK_VERSION "1.7.0 (Dec 2013)" /* VERSION History 1.7.0 (Dec 2013) - extensive changes to the binary table compression method. All types of binary table columns, including variable length array columns are now supported. The command line table compression flag has been changed to "-table" instead of "-BETAtable", and a new "-tableonly" flag has been introduced to only compress the binary tables in the input files(s) and not the image HDUs. 1.6.1 (Mar 2013) - numerous changes to the BETAtable compression method used to compress binary tables - added support for compression 'steering' keywords that specify the desired compression parameters that should be used when compressing that particular HDU, thus overriding the fpack command line parameter values. 1.6.0 (June 2012) - Fixed behavior of the "rename" function on Windows platforms so that it will clobber/delete an existing file before renaming a file to that name (the rename command behaves differently on POSIX and non-POSIX environments). 1.6.0 (February 2011) - Added full support for compressing and uncompressing FITS binary tables using a newly proposed format convention. This is intended only for further feasibility studies, and is not recommended for use with publicly distributed FITS files. - Use the minimum of the MAD 2nd, 3rd, and 5th order values as a more conservative extimate of the noise when quantizing floating point images. - Enhanced the tile compression routines so that a tile that contains all NaN pixel values will be compressed. - When uncompressing an image that was originally in a FITS primary array, funpack will also append any new keywords that were written into the primary array of the compressed FITS file after the file was compressed. - Added support for the GZIP_2 algorithm, which shuffles the bytes in the pixel values prior to compressing them with gzip. 1.5.1 (December 2010) Added prototype, mainly hidden, support for compressing binary tables. 1.5.0 (August 2010) Added the -i2f option to lossy compress integer images. 1.4.0 (Jan 2010) Reduced the default value for the q floating point image quantization parameter from 16 to 4. This results in about 50% better compression (from about 4.6x to 6.4) with no lost of significant information (with the new subtractive dithering enhancement). Replaced the code for generating temporary filenames to make the code more portable (to Windows). Replaced calls to the unix 'access' and 'stat' functions with more portable code. When unpacking a file, write it first to a temporary file, then rename it when finished, so that other tasks cannot try to read the file before it is complete. 1.3.0 (Oct 2009) added randomization to the dithering pattern so that the same pattern is not used for every image; also added an option for losslessly compressing floating point images with GZIP for test purposes (not recommended for general use). Also added support for reading the input FITS file from the stdin file streams. 1.2.0 (Sept 2009) added subtractive dithering feature (in CFITSIO) when quantizing floating point images; When packing an IRAF .imh + .pix image, the file name is changed to FILE.fits.fz, and if the original file is deleted, then both the .imh and .pix files are deleted. 1.1.4 (May 2009) added -E option to funpack to unpack a list of HDUs 1.1.3 (March 2009) minor modifications to the content and format of the -T report 1.1.2 (September 2008) */ #define FP_INIT_MAGIC 42 #define FPACK 0 #define FUNPACK 1 /* changed from 16 in Jan. 2010 */ #define DEF_QLEVEL 4. #define DEF_HCOMP_SCALE 0. #define DEF_HCOMP_SMOOTH 0 #define DEF_RESCALE_NOISE 0 #define SZ_STR 513 #define SZ_CARD 81 typedef struct { int comptype; float quantize_level; int no_dither; int dither_offset; int dither_method; float scale; float rescale_noise; int smooth; int int_to_float; float n3ratio; float n3min; long ntile[MAX_COMPRESS_DIM]; int to_stdout; int listonly; int clobber; int delete_input; int do_not_prompt; int do_checksums; int do_gzip_file; int do_images; int do_tables; int test_all; int verbose; char prefix[SZ_STR]; char extname[SZ_STR]; int delete_suffix; char outfile[SZ_STR]; int firstfile; int initialized; int preflight_checked; } fpstate; typedef struct { int n_nulls; double minval; double maxval; double mean; double sigma; double noise1; double noise2; double noise3; double noise5; } imgstats; int fp_get_param (int argc, char *argv[], fpstate *fpptr); void abort_fpack(int sig); void fp_abort_output (fitsfile *infptr, fitsfile *outfptr, int stat); int fp_usage (void); int fp_help (void); int fp_hint (void); int fp_init (fpstate *fpptr); int fp_list (int argc, char *argv[], fpstate fpvar); int fp_info (char *infits); int fp_info_hdu (fitsfile *infptr); int fp_preflight (int argc, char *argv[], int unpack, fpstate *fpptr); int fp_loop (int argc, char *argv[], int unpack, fpstate fpvar); int fp_pack (char *infits, char *outfits, fpstate fpvar, int *islossless); int fp_unpack (char *infits, char *outfits, fpstate fpvar); int fp_test (char *infits, char *outfits, char *outfits2, fpstate fpvar); int fp_pack_hdu (fitsfile *infptr, fitsfile *outfptr, fpstate fpvar, int *islossless, int *status); int fp_unpack_hdu (fitsfile *infptr, fitsfile *outfptr, fpstate fpvar, int *status); int fits_read_image_speed (fitsfile *infptr, float *whole_elapse, float *whole_cpu, float *row_elapse, float *row_cpu, int *status); int fp_test_hdu (fitsfile *infptr, fitsfile *outfptr, fitsfile *outfptr2, fpstate fpvar, int *status); int fp_test_table (fitsfile *infptr, fitsfile *outfptr, fitsfile *outfptr2, fpstate fpvar, int *status); int marktime(int *status); int gettime(float *elapse, float *elapscpu, int *status); int fits_read_image_speed (fitsfile *infptr, float *whole_elapse, float *whole_cpu, float *row_elapse, float *row_cpu, int *status); int fp_i2stat(fitsfile *infptr, int naxis, long *naxes, imgstats *imagestats, int *status); int fp_i4stat(fitsfile *infptr, int naxis, long *naxes, imgstats *imagestats, int *status); int fp_r4stat(fitsfile *infptr, int naxis, long *naxes, imgstats *imagestats, int *status); int fp_i2rescale(fitsfile *infptr, int naxis, long *naxes, double rescale, fitsfile *outfptr, int *status); int fp_i4rescale(fitsfile *infptr, int naxis, long *naxes, double rescale, fitsfile *outfptr, int *status); int fp_msg (char *msg); int fp_version (void); int fp_noop (void); int fu_get_param (int argc, char *argv[], fpstate *fpptr); int fu_usage (void); int fu_hint (void); int fu_help (void); healpy-1.8.1/cfitsio/swapproc.c0000654000175000017530000001702712272000775017066 0ustar zoncaplanck00000000000000/* This file, swapproc.c, contains general utility routines that are */ /* used by other FITSIO routines to swap bytes. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ /* The fast SSE2 and SSSE3 functions were provided by Julian Taylor, ESO */ #include #include #include "fitsio2.h" /* bswap builtin is available since GCC 4.3 */ #if __GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 3) #define HAVE_BSWAP #endif #ifdef __SSSE3__ #include /* swap 16 bytes according to mask, values must be 16 byte aligned */ static inline void swap_ssse3(char * values, __m128i mask) { __m128i v = _mm_load_si128((__m128i *)values); __m128i s = _mm_shuffle_epi8(v, mask); _mm_store_si128((__m128i*)values, s); } #endif #ifdef __SSE2__ #include /* swap 8 shorts, values must be 16 byte aligned * faster than ssse3 variant for shorts */ static inline void swap2_sse2(char * values) { __m128i r1 = _mm_load_si128((__m128i *)values); __m128i r2 = r1; r1 = _mm_srli_epi16(r1, 8); r2 = _mm_slli_epi16(r2, 8); r1 = _mm_or_si128(r1, r2); _mm_store_si128((__m128i*)values, r1); } /* the three shuffles required for 4 and 8 byte variants make * SSE2 slower than bswap */ /* get number of elements to peel to reach alignment */ static inline size_t get_peel(void * addr, size_t esize, size_t nvals, size_t alignment) { const size_t offset = (size_t)addr % alignment; size_t peel = offset ? (alignment - offset) / esize : 0; peel = nvals < peel ? nvals : peel; return peel; } #endif /*--------------------------------------------------------------------------*/ static void ffswap2_slow(short *svalues, long nvals) { register long ii; unsigned short * usvalues; usvalues = (unsigned short *) svalues; for (ii = 0; ii < nvals; ii++) { usvalues[ii] = (usvalues[ii]>>8) | (usvalues[ii]<<8); } } /*--------------------------------------------------------------------------*/ #if __SSE2__ void ffswap2(short *svalues, /* IO - pointer to shorts to be swapped */ long nvals) /* I - number of shorts to be swapped */ /* swap the bytes in the input short integers: ( 0 1 -> 1 0 ) */ { if ((long)svalues % 2 != 0) { /* should not happen */ ffswap2_slow(svalues, nvals); return; } long ii; size_t peel = get_peel((void*)&svalues[0], sizeof(svalues[0]), nvals, 16); ffswap2_slow(svalues, peel); for (ii = peel; ii < (nvals - peel - (nvals - peel) % 8); ii+=8) { swap2_sse2((char*)&svalues[ii]); } ffswap2_slow(&svalues[ii], nvals - ii); } #else void ffswap2(short *svalues, /* IO - pointer to shorts to be swapped */ long nvals) /* I - number of shorts to be swapped */ /* swap the bytes in the input 4-byte integer: ( 0 1 2 3 -> 3 2 1 0 ) */ { ffswap2_slow(svalues, nvals); } #endif /*--------------------------------------------------------------------------*/ static void ffswap4_slow(INT32BIT *ivalues, long nvals) { register long ii; #if defined(HAVE_BSWAP) for (ii = 0; ii < nvals; ii++) { ivalues[ii] = __builtin_bswap32(ivalues[ii]); } #elif defined(_MSC_VER) && (_MSC_VER >= 1400) /* intrinsic byte swapping function in Microsoft Visual C++ 8.0 and later */ unsigned int* uivalues = (unsigned int *) ivalues; /* intrinsic byte swapping function in Microsoft Visual C++ */ for (ii = 0; ii < nvals; ii++) { uivalues[ii] = _byteswap_ulong(uivalues[ii]); } #else char *cvalues, tmp; for (ii = 0; ii < nvals; ii++) { cvalues = (char *)&ivalues[ii]; tmp = cvalues[0]; cvalues[0] = cvalues[3]; cvalues[3] = tmp; tmp = cvalues[1]; cvalues[1] = cvalues[2]; cvalues[2] = tmp; } #endif } /*--------------------------------------------------------------------------*/ #ifdef __SSSE3__ void ffswap4(INT32BIT *ivalues, /* IO - pointer to INT*4 to be swapped */ long nvals) /* I - number of floats to be swapped */ /* swap the bytes in the input 4-byte integer: ( 0 1 2 3 -> 3 2 1 0 ) */ { if ((long)ivalues % 4 != 0) { /* should not happen */ ffswap4_slow(ivalues, nvals); return; } long ii; const __m128i cmask4 = _mm_set_epi8(12, 13, 14, 15, 8, 9, 10, 11, 4, 5, 6, 7, 0, 1, 2 ,3); size_t peel = get_peel((void*)&ivalues[0], sizeof(ivalues[0]), nvals, 16); ffswap4_slow(ivalues, peel); for (ii = peel; ii < (nvals - peel - (nvals - peel) % 4); ii+=4) { swap_ssse3((char*)&ivalues[ii], cmask4); } ffswap4_slow(&ivalues[ii], nvals - ii); } #else void ffswap4(INT32BIT *ivalues, /* IO - pointer to INT*4 to be swapped */ long nvals) /* I - number of floats to be swapped */ /* swap the bytes in the input 4-byte integer: ( 0 1 2 3 -> 3 2 1 0 ) */ { ffswap4_slow(ivalues, nvals); } #endif /*--------------------------------------------------------------------------*/ static void ffswap8_slow(double *dvalues, long nvals) { register long ii; #ifdef HAVE_BSWAP LONGLONG * llvalues = (LONGLONG*)dvalues; for (ii = 0; ii < nvals; ii++) { llvalues[ii] = __builtin_bswap64(llvalues[ii]); } #elif defined(_MSC_VER) && (_MSC_VER >= 1400) /* intrinsic byte swapping function in Microsoft Visual C++ 8.0 and later */ unsigned __int64 * llvalues = (unsigned __int64 *) dvalues; for (ii = 0; ii < nvals; ii++) { llvalues[ii] = _byteswap_uint64(llvalues[ii]); } #else register char *cvalues; register char temp; cvalues = (char *) dvalues; /* copy the pointer value */ for (ii = 0; ii < nvals*8; ii += 8) { temp = cvalues[ii]; cvalues[ii] = cvalues[ii+7]; cvalues[ii+7] = temp; temp = cvalues[ii+1]; cvalues[ii+1] = cvalues[ii+6]; cvalues[ii+6] = temp; temp = cvalues[ii+2]; cvalues[ii+2] = cvalues[ii+5]; cvalues[ii+5] = temp; temp = cvalues[ii+3]; cvalues[ii+3] = cvalues[ii+4]; cvalues[ii+4] = temp; } #endif } /*--------------------------------------------------------------------------*/ #ifdef __SSSE3__ void ffswap8(double *dvalues, /* IO - pointer to doubles to be swapped */ long nvals) /* I - number of doubles to be swapped */ /* swap the bytes in the input doubles: ( 01234567 -> 76543210 ) */ { if ((long)dvalues % 8 != 0) { /* should not happen on amd64 */ ffswap8_slow(dvalues, nvals); return; } long ii; const __m128i cmask8 = _mm_set_epi8(8, 9, 10, 11, 12, 13, 14, 15, 0, 1, 2 ,3, 4, 5, 6, 7); size_t peel = get_peel((void*)&dvalues[0], sizeof(dvalues[0]), nvals, 16); ffswap8_slow(dvalues, peel); for (ii = peel; ii < (nvals - peel - (nvals - peel) % 2); ii+=2) { swap_ssse3((char*)&dvalues[ii], cmask8); } ffswap8_slow(&dvalues[ii], nvals - ii); } #else void ffswap8(double *dvalues, /* IO - pointer to doubles to be swapped */ long nvals) /* I - number of doubles to be swapped */ /* swap the bytes in the input doubles: ( 01234567 -> 76543210 ) */ { ffswap8_slow(dvalues, nvals); } #endif healpy-1.8.1/cfitsio/f77_wrap.h0000654000175000017530000002427612272000775016675 0ustar zoncaplanck00000000000000#define UNSIGNED_BYTE #include "cfortran.h" /************************************************************************ Some platforms creates longs as 8-byte integers. On other machines, ints and longs are both 4-bytes, so both are compatible with Fortrans default integer which is 4-bytes. To support 8-byte longs, we must redefine LONGs and convert them to 8-bytes when going to C, and restore them to 4-bytes when returning to Fortran. Ugh!!! *************************************************************************/ #if defined(DECFortran) || (defined(__alpha) && defined(g77Fortran)) \ || (defined(mipsFortran) && _MIPS_SZLONG==64) \ || (defined(IBMR2Fortran) && defined(__64BIT__)) \ || defined(__ia64__) \ || defined (__sparcv9) || (defined(__sparc__) && defined(__arch64__)) \ || defined (__x86_64__) \ || defined (_SX) \ || defined (__powerpc64__)\ || defined (__s390x__) #define LONG8BYTES_INT4BYTES #undef LONGV_cfSTR #undef PLONG_cfSTR #undef LONGVVVVVVV_cfTYPE #undef PLONG_cfTYPE #undef LONGV_cfT #undef PLONG_cfT #define LONGV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,LONGV,A,B,C,D,E) #define PLONG_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,PLONG,A,B,C,D,E) #define LONGVVVVVVV_cfTYPE int #define PLONG_cfTYPE int #define LONGV_cfQ(B) long *B, _(B,N); #define PLONG_cfQ(B) long B; #define LONGV_cfT(M,I,A,B,D) ( (_(B,N) = * _3(M,_LONGV_A,I)), \ B = F2Clongv(_(B,N),A) ) #define PLONG_cfT(M,I,A,B,D) ((B=*A),&B) #define LONGV_cfR(A,B,D) C2Flongv(_(B,N),A,B); #define PLONG_cfR(A,B,D) *A=B; #define LONGV_cfH(S,U,B) #define PLONG_cfH(S,U,B) static long *F2Clongv(long size, int *A) { long i; long *B; B=(long *)malloc( size*sizeof(long) ); for(i=0;idsc$a_pointer /* We want single strings to be equivalent to string vectors with */ /* a single element, so ignore the number of elements info in the */ /* vector structure, and rely on the NUM_ELEM definitions. */ #undef STRINGV_cfT #define STRINGV_cfT(M,I,A,B,D) TTTTSTRV(A->dsc$a_pointer, B, \ A->dsc$w_length, \ num_elem(A->dsc$a_pointer, \ A->dsc$w_length, \ _3(M,_STRV_A,I) ) ) #else #ifdef CRAYFortran #define PPSTRING_cfT(M,I,A,B,D) (unsigned char*)_fcdtocp(A) #else #define PPSTRING_cfT(M,I,A,B,D) (unsigned char*)A #endif #endif #define _cfMAX(A,B) ( (A>B) ? A : B ) #define STRINGV_cfQ(B) char **B; unsigned int _(B,N), _(B,M); #define STRINGV_cfR(A,B,D) free(B[0]); free(B); #define TTSTR( A,B,D) \ ((B=(char*)malloc(_cfMAX(D,gMinStrLen)+1))[D]='\0',memcpy(B,A,D), \ kill_trailing(B,' ')) #define TTTTSTRV( A,B,D,E) ( \ _(B,N)=_cfMAX(E,1), \ _(B,M)=_cfMAX(D,gMinStrLen)+1, \ B=(char**)malloc(_(B,N)*sizeof(char*)), \ B[0]=(char*)malloc(_(B,N)*_(B,M)), \ vindex(B,_(B,M),_(B,N),f2cstrv2(A,B[0],D,_(B,M),_(B,N))) \ ) #define RRRRPSTRV(A,B,D) \ c2fstrv2(B[0],A,_(B,M),D,_(B,N)), \ free(B[0]), \ free(B); static char **vindex(char **B, int elem_len, int nelem, char *B0) { int i; if( nelem ) for( i=0;idsc$a_pointer)[0]) #define BYTEV_cfT(M,I,A,B,D) (INTEGER_BYTE*)A->dsc$a_pointer #else #ifdef CRAYFortran #define BYTE_cfN(T,A) _fcd A #define BYTEV_cfN(T,A) _fcd A #define BYTE_cfT(M,I,A,B,D) (INTEGER_BYTE)((_fcdtocp(A))[0]) #define BYTEV_cfT(M,I,A,B,D) (INTEGER_BYTE*)_fcdtocp(A) #else #define BYTE_cfN(T,A) INTEGER_BYTE * A #define BYTEV_cfN(T,A) INTEGER_BYTE * A #define BYTE_cfT(M,I,A,B,D) A[0] #define BYTEV_cfT(M,I,A,B,D) A #endif #endif /************************************************************************ The following definitions and functions handle conversions between C and Fortran arrays of LOGICALS. Individually, LOGICALS are treated as int's but as char's when in an array. cfortran defines (F2C/C2F)LOGICALV but never uses them, so these routines also handle TRUE/FALSE conversions. *************************************************************************/ #undef LOGICALV_cfSTR #undef LOGICALV_cfT #define LOGICALV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,LOGICALV,A,B,C,D,E) #define LOGICALV_cfQ(B) char *B; unsigned int _(B,N); #define LOGICALV_cfT(M,I,A,B,D) (_(B,N)= * _3(M,_LOGV_A,I), \ B=F2CcopyLogVect(_(B,N),A)) #define LOGICALV_cfR(A,B,D) C2FcopyLogVect(_(B,N),A,B); #define LOGICALV_cfH(S,U,B) static char *F2CcopyLogVect(long size, int *A) { long i; char *B; B=(char *)malloc(size*sizeof(char)); for( i=0; i" ..\cfitsio cmake.exe --build . --config Release Where the string is the string that was selected in step e. Note that the "..\cfitsio" argument in the first command gives the path to the directory that contains the CFITSIO source files and the CMakeLists.txt file. The "." argument in the second command (following --build) tells CMake to build the files in the current directory (i.e., the cfitsio.build directory). If this process completes successfully, you should find the CFITSIO library files that were created in the "cfitsio.build\Release" subdirectory. To verify that CFITSIO is working correctly, execute the testprog.exe file (in that Release directory). This should generate a long stream of diagnostic messages ending with the line "Status = 0: OK - no error". g. Other CMake options. CMake has many other build options that may be useful in some situations. Refer to the CMake documentation for more information. For example, one can build a 'debug' version of the CFITSIO library by executing the command "cmake.exe --build ." instead of the 2nd command listed above in section f. One can also make a thread safe version of CFITSIO using the pthread library with the following procedure: a. Download the precompiled files from the pthread-win32 project (http://sourceware.org/pthreads-win32/). Put the files for your specific platform (.h, .lib, .dll) into a folder 'pthread', parallel to the cfitsio source folder. b. For the compilation of cfitsio follow the cmake steps, but use this change as a replacement for the commands in step f: cmake.exe -G "" ..\cfitsio -DUSE_PTHREADS=1 -DCMAKE_INCLUDE_PATH=..\pthread -DCMAKE_LIBRARY_PATH=..\pthread cmake.exe --build . --config Release You may need to adapt the paths for the source directory and the pthread library. ============================================================================ 2. Using CFITSIO when compiling and linking application programs First, depending on your particular programming environment, it may be necessary to copy the cfitsio.lib and cfitsio.dll files into another directory where your compiler expects to find them. Or equivalently, you may need to specify the directory path to the location of the CFITSIO library files when creating a project that uses them. You may also need to copy the fitsio.h and longnam.h include files from the \cfitsio source file directory to a standard 'include' directory on your system. When using the Visual Studio command line window, application programs can be compiled and linked with CFITSIO using the following command: cl /MD your_program.c cfitsio.lib The /MD command line switch must be specified to force the compiler/linker to use the appropriate runtime library. If this switch is omitted, then the fits_report_error function in CFITSIO will likely crash. When building programs in the Visual Studio graphical environment, one can force the equivalent of the /MD switch by selecting 'Settings...' under the 'Project' menu, then click on the C/C++ tab and select the 'Code Generator' category. Then under 'User Run-time Library' select 'Multithreaded DLL'. =============================================================================== healpy-1.8.1/cfitsio/f77_wrap2.c0000654000175000017530000007720112272000775016746 0ustar zoncaplanck00000000000000/************************************************************************ f77_wrap1.c and f77_wrap2.c have now been split into 4 files to prevent compile-time memory errors (from expansion of compiler commands). f77_wrap1.c was split into f77_wrap1.c and f77_wrap3.c, and f77_wrap2.c was split into f77_wrap2.c and f77_wrap4.c: f77_wrap1.c contains routines operating on whole files and some utility routines. f77_wrap2.c contains routines operating on primary array, image, or column elements. f77_wrap3.c contains routines operating on headers & keywords. f77_wrap4.c contains miscellaneous routines. Peter's original comments: Together, f77_wrap1.c and f77_wrap2.c contain C wrappers for all the CFITSIO routines prototyped in fitsio.h, except for the generic datatype routines and features not supported in fortran (eg, unsigned integers), a few routines prototyped in fitsio2.h, which only a handful of FTOOLS use, plus a few obsolete FITSIO routines not present in CFITSIO. This file allows Fortran code to use the CFITSIO library instead of the FITSIO library without modification. It also gives access to new routines not present in FITSIO. Fortran FTOOLS must continue using the old routine names from FITSIO (ie, ftxxxx), but most of the C-wrappers simply redirect those calls to the corresponding CFITSIO routines (ie, ffxxxx), with appropriate parameter massaging where necessary. The main exception are read/write routines ending in j (ie, long data) which get redirected to C routines ending in k (ie, int data). This is more consistent with the default integer type in Fortran. f77_wrap1.c primarily holds routines operating on whole files and extension headers. f77_wrap2.c handle routines which read and write the data portion, plus miscellaneous extra routines. File created by Peter Wilson (HSTX), Oct-Dec. 1997 ************************************************************************/ #include "fitsio2.h" #include "f77_wrap.h" FCALLSCSUB5(ffgextn,FTGEXTN,ftgextn,FITSUNIT,LONG,LONG,BYTEV,PINT) FCALLSCSUB5(ffpextn,FTPEXTN,ftpextn,FITSUNIT,LONG,LONG,BYTEV,PINT) /*------------ read primary array or image elements -------------*/ FCALLSCSUB8(ffgpvb,FTGPVB,ftgpvb,FITSUNIT,LONG,LONG,LONG,BYTE,BYTEV,PLOGICAL,PINT) FCALLSCSUB8(ffgpvi,FTGPVI,ftgpvi,FITSUNIT,LONG,LONG,LONG,SHORT,SHORTV,PLOGICAL,PINT) FCALLSCSUB8(ffgpvk,FTGPVJ,ftgpvj,FITSUNIT,LONG,LONG,LONG,INT,INTV,PLOGICAL,PINT) FCALLSCSUB8(ffgpvjj,FTGPVK,ftgpvk,FITSUNIT,LONG,LONG,LONG,LONGLONG,LONGLONGV,PLOGICAL,PINT) FCALLSCSUB8(ffgpve,FTGPVE,ftgpve,FITSUNIT,LONG,LONG,LONG,FLOAT,FLOATV,PLOGICAL,PINT) FCALLSCSUB8(ffgpvd,FTGPVD,ftgpvd,FITSUNIT,LONG,LONG,LONG,DOUBLE,DOUBLEV,PLOGICAL,PINT) #define ftgpfb_LOGV_A6 A4 FCALLSCSUB8(ffgpfb,FTGPFB,ftgpfb,FITSUNIT,LONG,LONG,LONG,BYTEV,LOGICALV,PLOGICAL,PINT) #define ftgpfi_LOGV_A6 A4 FCALLSCSUB8(ffgpfi,FTGPFI,ftgpfi,FITSUNIT,LONG,LONG,LONG,SHORTV,LOGICALV,PLOGICAL,PINT) #define ftgpfj_LOGV_A6 A4 FCALLSCSUB8(ffgpfk,FTGPFJ,ftgpfj,FITSUNIT,LONG,LONG,LONG,INTV,LOGICALV,PLOGICAL,PINT) #define ftgpfk_LOGV_A6 A4 FCALLSCSUB8(ffgpfjj,FTGPFK,ftgpfk,FITSUNIT,LONG,LONG,LONG,LONGLONGV,LOGICALV,PLOGICAL,PINT) #define ftgpfe_LOGV_A6 A4 FCALLSCSUB8(ffgpfe,FTGPFE,ftgpfe,FITSUNIT,LONG,LONG,LONG,FLOATV,LOGICALV,PLOGICAL,PINT) #define ftgpfd_LOGV_A6 A4 FCALLSCSUB8(ffgpfd,FTGPFD,ftgpfd,FITSUNIT,LONG,LONG,LONG,DOUBLEV,LOGICALV,PLOGICAL,PINT) FCALLSCSUB9(ffg2db,FTG2DB,ftg2db,FITSUNIT,LONG,BYTE,LONG,LONG,LONG,BYTEV,PLOGICAL,PINT) FCALLSCSUB9(ffg2di,FTG2DI,ftg2di,FITSUNIT,LONG,SHORT,LONG,LONG,LONG,SHORTV,PLOGICAL,PINT) FCALLSCSUB9(ffg2dk,FTG2DJ,ftg2dj,FITSUNIT,LONG,INT,LONG,LONG,LONG,INTV,PLOGICAL,PINT) FCALLSCSUB9(ffg2djj,FTG2DK,ftg2dk,FITSUNIT,LONG,LONGLONG,LONG,LONG,LONG,LONGLONGV,PLOGICAL,PINT) FCALLSCSUB9(ffg2de,FTG2DE,ftg2de,FITSUNIT,LONG,FLOAT,LONG,LONG,LONG,FLOATV,PLOGICAL,PINT) FCALLSCSUB9(ffg2dd,FTG2DD,ftg2dd,FITSUNIT,LONG,DOUBLE,LONG,LONG,LONG,DOUBLEV,PLOGICAL,PINT) FCALLSCSUB11(ffg3db,FTG3DB,ftg3db,FITSUNIT,LONG,BYTE,LONG,LONG,LONG,LONG,LONG,BYTEV,PLOGICAL,PINT) FCALLSCSUB11(ffg3di,FTG3DI,ftg3di,FITSUNIT,LONG,SHORT,LONG,LONG,LONG,LONG,LONG,SHORTV,PLOGICAL,PINT) FCALLSCSUB11(ffg3dk,FTG3DJ,ftg3dj,FITSUNIT,LONG,INT,LONG,LONG,LONG,LONG,LONG,INTV,PLOGICAL,PINT) FCALLSCSUB11(ffg3djj,FTG3DK,ftg3dk,FITSUNIT,LONG,LONGLONG,LONG,LONG,LONG,LONG,LONG,LONGLONGV,PLOGICAL,PINT) FCALLSCSUB11(ffg3de,FTG3DE,ftg3de,FITSUNIT,LONG,FLOAT,LONG,LONG,LONG,LONG,LONG,FLOATV,PLOGICAL,PINT) FCALLSCSUB11(ffg3dd,FTG3DD,ftg3dd,FITSUNIT,LONG,DOUBLE,LONG,LONG,LONG,LONG,LONG,DOUBLEV,PLOGICAL,PINT) /* The follow LONGV definitions have +1 appended because the */ /* routines use of NAXIS+1 elements of the long vectors. */ #define ftgsvb_LONGV_A4 A3+1 #define ftgsvb_LONGV_A5 A3+1 #define ftgsvb_LONGV_A6 A3+1 #define ftgsvb_LONGV_A7 A3+1 FCALLSCSUB11(ffgsvb,FTGSVB,ftgsvb,FITSUNIT,INT,INT,LONGV,LONGV,LONGV,LONGV,BYTE,BYTEV,PLOGICAL,PINT) #define ftgsvi_LONGV_A4 A3+1 #define ftgsvi_LONGV_A5 A3+1 #define ftgsvi_LONGV_A6 A3+1 #define ftgsvi_LONGV_A7 A3+1 FCALLSCSUB11(ffgsvi,FTGSVI,ftgsvi,FITSUNIT,INT,INT,LONGV,LONGV,LONGV,LONGV,SHORT,SHORTV,PLOGICAL,PINT) #define ftgsvj_LONGV_A4 A3+1 #define ftgsvj_LONGV_A5 A3+1 #define ftgsvj_LONGV_A6 A3+1 #define ftgsvj_LONGV_A7 A3+1 FCALLSCSUB11(ffgsvk,FTGSVJ,ftgsvj,FITSUNIT,INT,INT,LONGV,LONGV,LONGV,LONGV,INT,INTV,PLOGICAL,PINT) #define ftgsvk_LONGV_A4 A3+1 #define ftgsvk_LONGV_A5 A3+1 #define ftgsvk_LONGV_A6 A3+1 #define ftgsvk_LONGV_A7 A3+1 FCALLSCSUB11(ffgsvjj,FTGSVK,ftgsvk,FITSUNIT,INT,INT,LONGV,LONGV,LONGV,LONGV,LONGLONG,LONGLONGV,PLOGICAL,PINT) #define ftgsve_LONGV_A4 A3+1 #define ftgsve_LONGV_A5 A3+1 #define ftgsve_LONGV_A6 A3+1 #define ftgsve_LONGV_A7 A3+1 FCALLSCSUB11(ffgsve,FTGSVE,ftgsve,FITSUNIT,INT,INT,LONGV,LONGV,LONGV,LONGV,FLOAT,FLOATV,PLOGICAL,PINT) #define ftgsvd_LONGV_A4 A3+1 #define ftgsvd_LONGV_A5 A3+1 #define ftgsvd_LONGV_A6 A3+1 #define ftgsvd_LONGV_A7 A3+1 FCALLSCSUB11(ffgsvd,FTGSVD,ftgsvd,FITSUNIT,INT,INT,LONGV,LONGV,LONGV,LONGV,DOUBLE,DOUBLEV,PLOGICAL,PINT) /* Must handle LOGICALV conversion manually */ void Cffgsfb( fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, unsigned char *array, int *flagval, int *anynul, int *status ); void Cffgsfb( fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, unsigned char *array, int *flagval, int *anynul, int *status ) { char *Cflagval; long nflagval; int i; for( nflagval=1, i=0; i /* stddef.h is apparently needed to define size_t */ #include #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffuky( fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the value */ const char *keyname,/* I - name of keyword to write */ void *value, /* I - keyword value */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ /* Update the keyword, value and comment in the FITS header. The datatype is specified by the 2nd argument. */ { if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (datatype == TSTRING) { ffukys(fptr, keyname, (char *) value, comm, status); } else if (datatype == TBYTE) { ffukyj(fptr, keyname, (LONGLONG) *(unsigned char *) value, comm, status); } else if (datatype == TSBYTE) { ffukyj(fptr, keyname, (LONGLONG) *(signed char *) value, comm, status); } else if (datatype == TUSHORT) { ffukyj(fptr, keyname, (LONGLONG) *(unsigned short *) value, comm, status); } else if (datatype == TSHORT) { ffukyj(fptr, keyname, (LONGLONG) *(short *) value, comm, status); } else if (datatype == TINT) { ffukyj(fptr, keyname, (LONGLONG) *(int *) value, comm, status); } else if (datatype == TUINT) { ffukyg(fptr, keyname, (double) *(unsigned int *) value, 0, comm, status); } else if (datatype == TLOGICAL) { ffukyl(fptr, keyname, *(int *) value, comm, status); } else if (datatype == TULONG) { ffukyg(fptr, keyname, (double) *(unsigned long *) value, 0, comm, status); } else if (datatype == TLONG) { ffukyj(fptr, keyname, (LONGLONG) *(long *) value, comm, status); } else if (datatype == TLONGLONG) { ffukyj(fptr, keyname, *(LONGLONG *) value, comm, status); } else if (datatype == TFLOAT) { ffukye(fptr, keyname, *(float *) value, -7, comm, status); } else if (datatype == TDOUBLE) { ffukyd(fptr, keyname, *(double *) value, -15, comm, status); } else if (datatype == TCOMPLEX) { ffukyc(fptr, keyname, (float *) value, -7, comm, status); } else if (datatype == TDBLCOMPLEX) { ffukym(fptr, keyname, (double *) value, -15, comm, status); } else *status = BAD_DATATYPE; return(*status); } /*--------------------------------------------------------------------------*/ int ffukyu(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { int tstatus; if (*status > 0) /* inherit input status value if > 0 */ return(*status); tstatus = *status; if (ffmkyu(fptr, keyname, comm, status) == KEY_NO_EXIST) { *status = tstatus; ffpkyu(fptr, keyname, comm, status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffukys(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ const char *value, /* I - keyword value */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { int tstatus; if (*status > 0) /* inherit input status value if > 0 */ return(*status); tstatus = *status; if (ffmkys(fptr, keyname, value, comm, status) == KEY_NO_EXIST) { *status = tstatus; ffpkys(fptr, keyname, value, comm, status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffukls(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ const char *value, /* I - keyword value */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { /* update a long string keyword */ int tstatus; char junk[FLEN_ERRMSG]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); tstatus = *status; if (ffmkls(fptr, keyname, value, comm, status) == KEY_NO_EXIST) { /* since the ffmkls call failed, it wrote a bogus error message */ fits_read_errmsg(junk); /* clear the error message */ *status = tstatus; ffpkls(fptr, keyname, value, comm, status); } return(*status); }/*--------------------------------------------------------------------------*/ int ffukyl(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - keyword name */ int value, /* I - keyword value */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { int tstatus; if (*status > 0) /* inherit input status value if > 0 */ return(*status); tstatus = *status; if (ffmkyl(fptr, keyname, value, comm, status) == KEY_NO_EXIST) { *status = tstatus; ffpkyl(fptr, keyname, value, comm, status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffukyj(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - keyword name */ LONGLONG value, /* I - keyword value */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { int tstatus; if (*status > 0) /* inherit input status value if > 0 */ return(*status); tstatus = *status; if (ffmkyj(fptr, keyname, value, comm, status) == KEY_NO_EXIST) { *status = tstatus; ffpkyj(fptr, keyname, value, comm, status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffukyf(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - keyword name */ float value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { int tstatus; if (*status > 0) /* inherit input status value if > 0 */ return(*status); tstatus = *status; if (ffmkyf(fptr, keyname, value, decim, comm, status) == KEY_NO_EXIST) { *status = tstatus; ffpkyf(fptr, keyname, value, decim, comm, status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffukye(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - keyword name */ float value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { int tstatus; if (*status > 0) /* inherit input status value if > 0 */ return(*status); tstatus = *status; if (ffmkye(fptr, keyname, value, decim, comm, status) == KEY_NO_EXIST) { *status = tstatus; ffpkye(fptr, keyname, value, decim, comm, status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffukyg(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - keyword name */ double value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { int tstatus; if (*status > 0) /* inherit input status value if > 0 */ return(*status); tstatus = *status; if (ffmkyg(fptr, keyname, value, decim, comm, status) == KEY_NO_EXIST) { *status = tstatus; ffpkyg(fptr, keyname, value, decim, comm, status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffukyd(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - keyword name */ double value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { int tstatus; if (*status > 0) /* inherit input status value if > 0 */ return(*status); tstatus = *status; if (ffmkyd(fptr, keyname, value, decim, comm, status) == KEY_NO_EXIST) { *status = tstatus; ffpkyd(fptr, keyname, value, decim, comm, status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffukfc(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - keyword name */ float *value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { int tstatus; if (*status > 0) /* inherit input status value if > 0 */ return(*status); tstatus = *status; if (ffmkfc(fptr, keyname, value, decim, comm, status) == KEY_NO_EXIST) { *status = tstatus; ffpkfc(fptr, keyname, value, decim, comm, status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffukyc(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - keyword name */ float *value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { int tstatus; if (*status > 0) /* inherit input status value if > 0 */ return(*status); tstatus = *status; if (ffmkyc(fptr, keyname, value, decim, comm, status) == KEY_NO_EXIST) { *status = tstatus; ffpkyc(fptr, keyname, value, decim, comm, status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffukfm(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - keyword name */ double *value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { int tstatus; if (*status > 0) /* inherit input status value if > 0 */ return(*status); tstatus = *status; if (ffmkfm(fptr, keyname, value, decim, comm, status) == KEY_NO_EXIST) { *status = tstatus; ffpkfm(fptr, keyname, value, decim, comm, status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffukym(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - keyword name */ double *value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { int tstatus; if (*status > 0) /* inherit input status value if > 0 */ return(*status); tstatus = *status; if (ffmkym(fptr, keyname, value, decim, comm, status) == KEY_NO_EXIST) { *status = tstatus; ffpkym(fptr, keyname, value, decim, comm, status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffucrd(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - keyword name */ const char *card, /* I - card string value */ int *status) /* IO - error status */ { int tstatus; if (*status > 0) /* inherit input status value if > 0 */ return(*status); tstatus = *status; if (ffmcrd(fptr, keyname, card, status) == KEY_NO_EXIST) { *status = tstatus; ffprec(fptr, card, status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffmrec(fitsfile *fptr, /* I - FITS file pointer */ int nkey, /* I - number of the keyword to modify */ const char *card, /* I - card string value */ int *status) /* IO - error status */ { if (*status > 0) /* inherit input status value if > 0 */ return(*status); ffmaky(fptr, nkey+1, status); ffmkey(fptr, card, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffmcrd(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ const char *card, /* I - card string value */ int *status) /* IO - error status */ { char tcard[FLEN_CARD], valstring[FLEN_CARD], comm[FLEN_CARD], value[FLEN_CARD]; int keypos, len; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (ffgcrd(fptr, keyname, tcard, status) > 0) return(*status); ffmkey(fptr, card, status); /* calc position of keyword in header */ keypos = (int) ((((fptr->Fptr)->nextkey) - ((fptr->Fptr)->headstart[(fptr->Fptr)->curhdu])) / 80) + 1; ffpsvc(tcard, valstring, comm, status); if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* check for string value which may be continued over multiple keywords */ ffpmrk(); /* put mark on message stack; erase any messages after this */ ffc2s(valstring, value, status); /* remove quotes and trailing spaces */ if (*status == VALUE_UNDEFINED) { ffcmrk(); /* clear any spurious error messages, back to the mark */ *status = 0; } else { len = strlen(value); while (len && value[len - 1] == '&') /* ampersand used as continuation char */ { ffgcnt(fptr, value, status); if (*value) { ffdrec(fptr, keypos, status); /* delete the keyword */ len = strlen(value); } else /* a null valstring indicates no continuation */ len = 0; } } return(*status); } /*--------------------------------------------------------------------------*/ int ffmnam(fitsfile *fptr, /* I - FITS file pointer */ const char *oldname,/* I - existing keyword name */ const char *newname,/* I - new name for keyword */ int *status) /* IO - error status */ { char comm[FLEN_COMMENT]; char value[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (ffgkey(fptr, oldname, value, comm, status) > 0) return(*status); ffmkky(newname, value, comm, card, status); /* construct the card */ ffmkey(fptr, card, status); /* rewrite with new name */ return(*status); } /*--------------------------------------------------------------------------*/ int ffmcom(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - keyword name */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char oldcomm[FLEN_COMMENT]; char value[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (ffgkey(fptr, keyname, value, oldcomm, status) > 0) return(*status); ffmkky(keyname, value, comm, card, status); /* construct the card */ ffmkey(fptr, card, status); /* rewrite with new comment */ return(*status); } /*--------------------------------------------------------------------------*/ int ffpunt(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - keyword name */ const char *unit, /* I - keyword unit string */ int *status) /* IO - error status */ /* Write (put) the units string into the comment field of the existing keyword. This routine uses a local FITS convention (not defined in the official FITS standard) in which the units are enclosed in square brackets following the '/' comment field delimiter, e.g.: KEYWORD = 12 / [kpc] comment string goes here */ { char oldcomm[FLEN_COMMENT]; char newcomm[FLEN_COMMENT]; char value[FLEN_VALUE]; char card[FLEN_CARD]; char *loc; size_t len; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (ffgkey(fptr, keyname, value, oldcomm, status) > 0) return(*status); /* copy the units string to the new comment string if not null */ if (*unit) { strcpy(newcomm, "["); strncat(newcomm, unit, 45); /* max allowed length is about 45 chars */ strcat(newcomm, "] "); len = strlen(newcomm); len = FLEN_COMMENT - len - 1; /* amount of space left in the field */ } else { newcomm[0] = '\0'; len = FLEN_COMMENT - 1; } if (oldcomm[0] == '[') /* check for existing units field */ { loc = strchr(oldcomm, ']'); /* look for the closing bracket */ if (loc) { loc++; while (*loc == ' ') /* skip any blank spaces */ loc++; strncat(newcomm, loc, len); /* concat remainder of comment */ } else { strncat(newcomm, oldcomm, len); /* append old comment onto new */ } } else { strncat(newcomm, oldcomm, len); } ffmkky(keyname, value, newcomm, card, status); /* construct the card */ ffmkey(fptr, card, status); /* rewrite with new units string */ return(*status); } /*--------------------------------------------------------------------------*/ int ffmkyu(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - keyword name */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char valstring[FLEN_VALUE]; char oldcomm[FLEN_COMMENT]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (ffgkey(fptr, keyname, valstring, oldcomm, status) > 0) return(*status); /* get old comment */ strcpy(valstring," "); /* create a dummy value string */ if (!comm || comm[0] == '&') /* preserve the current comment string */ ffmkky(keyname, valstring, oldcomm, card, status); else ffmkky(keyname, valstring, comm, card, status); ffmkey(fptr, card, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffmkys(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ const char *value, /* I - keyword value */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { /* NOTE: This routine does not support long continued strings */ /* It will correctly overwrite an existing long continued string, */ /* but it will not write a new long string. */ char oldval[FLEN_VALUE], valstring[FLEN_VALUE]; char oldcomm[FLEN_COMMENT]; char card[FLEN_CARD]; int len, keypos; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (ffgkey(fptr, keyname, oldval, oldcomm, status) > 0) return(*status); /* get old comment */ ffs2c(value, valstring, status); /* convert value to a string */ if (!comm || comm[0] == '&') /* preserve the current comment string */ ffmkky(keyname, valstring, oldcomm, card, status); else ffmkky(keyname, valstring, comm, card, status); ffmkey(fptr, card, status); /* overwrite the previous keyword */ keypos = (int) (((((fptr->Fptr)->nextkey) - ((fptr->Fptr)->headstart[(fptr->Fptr)->curhdu])) / 80) + 1); if (*status > 0) return(*status); /* check if old string value was continued over multiple keywords */ ffpmrk(); /* put mark on message stack; erase any messages after this */ ffc2s(oldval, valstring, status); /* remove quotes and trailing spaces */ if (*status == VALUE_UNDEFINED) { ffcmrk(); /* clear any spurious error messages, back to the mark */ *status = 0; } else { len = strlen(valstring); while (len && valstring[len - 1] == '&') /* ampersand is continuation char */ { ffgcnt(fptr, valstring, status); if (*valstring) { ffdrec(fptr, keypos, status); /* delete the continuation */ len = strlen(valstring); } else /* a null valstring indicates no continuation */ len = 0; } } return(*status); } /*--------------------------------------------------------------------------*/ int ffmkls( fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - name of keyword to write */ const char *value, /* I - keyword value */ const char *incomm, /* I - keyword comment */ int *status) /* IO - error status */ /* Modify the value and optionally the comment of a long string keyword. This routine supports the HEASARC long string convention and can modify arbitrarily long string keyword values. The value is continued over multiple keywords that have the name COMTINUE without an equal sign in column 9 of the card. This routine also supports simple string keywords which are less than 69 characters in length. This routine is not very efficient, so it should be used sparingly. */ { char valstring[FLEN_VALUE]; char card[FLEN_CARD], tmpkeyname[FLEN_CARD]; char comm[FLEN_COMMENT]; char tstring[FLEN_VALUE], *cptr; char *longval; int next, remain, vlen, nquote, nchar, namelen, contin, tstatus = -1; int nkeys, keypos; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (!incomm || incomm[0] == '&') /* preserve the old comment string */ { ffghps(fptr, &nkeys, &keypos, status); /* save current position */ if (ffgkls(fptr, keyname, &longval, comm, status) > 0) return(*status); /* keyword doesn't exist */ free(longval); /* don't need the old value */ /* move back to previous position to ensure that we delete */ /* the right keyword in case there are more than one keyword */ /* with this same name. */ ffgrec(fptr, keypos - 1, card, status); } else { /* copy the input comment string */ strncpy(comm, incomm, FLEN_COMMENT-1); comm[FLEN_COMMENT-1] = '\0'; } /* delete the old keyword */ if (ffdkey(fptr, keyname, status) > 0) return(*status); /* keyword doesn't exist */ ffghps(fptr, &nkeys, &keypos, status); /* save current position */ /* now construct the new keyword, and insert into header */ remain = strlen(value); /* number of characters to write out */ next = 0; /* pointer to next character to write */ /* count the number of single quote characters in the string */ nquote = 0; cptr = strchr(value, '\''); /* search for quote character */ while (cptr) /* search for quote character */ { nquote++; /* increment no. of quote characters */ cptr++; /* increment pointer to next character */ cptr = strchr(cptr, '\''); /* search for another quote char */ } strncpy(tmpkeyname, keyname, 80); tmpkeyname[80] = '\0'; cptr = tmpkeyname; while(*cptr == ' ') /* skip over leading spaces in name */ cptr++; /* determine the number of characters that will fit on the line */ /* Note: each quote character is expanded to 2 quotes */ namelen = strlen(cptr); if (namelen <= 8 && (fftkey(cptr, &tstatus) <= 0) ) { /* This a normal 8-character FITS keyword */ nchar = 68 - nquote; /* max of 68 chars fit in a FITS string value */ } else { /* This a HIERARCH keyword */ if (FSTRNCMP(cptr, "HIERARCH ", 9) && FSTRNCMP(cptr, "hierarch ", 9)) nchar = 66 - nquote - namelen; else nchar = 75 - nquote - namelen; /* don't count 'HIERARCH' twice */ } contin = 0; while (remain > 0) { strncpy(tstring, &value[next], nchar); /* copy string to temp buff */ tstring[nchar] = '\0'; ffs2c(tstring, valstring, status); /* put quotes around the string */ if (remain > nchar) /* if string is continued, put & as last char */ { vlen = strlen(valstring); nchar -= 1; /* outputting one less character now */ if (valstring[vlen-2] != '\'') valstring[vlen-2] = '&'; /* over write last char with & */ else { /* last char was a pair of single quotes, so over write both */ valstring[vlen-3] = '&'; valstring[vlen-1] = '\0'; } } if (contin) /* This is a CONTINUEd keyword */ { ffmkky("CONTINUE", valstring, comm, card, status); /* make keyword */ strncpy(&card[8], " ", 2); /* overwrite the '=' */ } else { ffmkky(keyname, valstring, comm, card, status); /* make keyword */ } ffirec(fptr, keypos, card, status); /* insert the keyword */ keypos++; /* next insert position */ contin = 1; remain -= nchar; next += nchar; nchar = 68 - nquote; } return(*status); } /*--------------------------------------------------------------------------*/ int ffmkyl(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ int value, /* I - keyword value */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char valstring[FLEN_VALUE]; char oldcomm[FLEN_COMMENT]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (ffgkey(fptr, keyname, valstring, oldcomm, status) > 0) return(*status); /* get old comment */ ffl2c(value, valstring, status); /* convert value to a string */ if (!comm || comm[0] == '&') /* preserve the current comment string */ ffmkky(keyname, valstring, oldcomm, card, status); else ffmkky(keyname, valstring, comm, card, status); ffmkey(fptr, card, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffmkyj(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ LONGLONG value, /* I - keyword value */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char valstring[FLEN_VALUE]; char oldcomm[FLEN_COMMENT]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (ffgkey(fptr, keyname, valstring, oldcomm, status) > 0) return(*status); /* get old comment */ ffi2c(value, valstring, status); /* convert value to a string */ if (!comm || comm[0] == '&') /* preserve the current comment string */ ffmkky(keyname, valstring, oldcomm, card, status); else ffmkky(keyname, valstring, comm, card, status); ffmkey(fptr, card, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffmkyf(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ float value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char valstring[FLEN_VALUE]; char oldcomm[FLEN_COMMENT]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (ffgkey(fptr, keyname, valstring, oldcomm, status) > 0) return(*status); /* get old comment */ ffr2f(value, decim, valstring, status); /* convert value to a string */ if (!comm || comm[0] == '&') /* preserve the current comment string */ ffmkky(keyname, valstring, oldcomm, card, status); else ffmkky(keyname, valstring, comm, card, status); ffmkey(fptr, card, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffmkye(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ float value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char valstring[FLEN_VALUE]; char oldcomm[FLEN_COMMENT]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (ffgkey(fptr, keyname, valstring, oldcomm, status) > 0) return(*status); /* get old comment */ ffr2e(value, decim, valstring, status); /* convert value to a string */ if (!comm || comm[0] == '&') /* preserve the current comment string */ ffmkky(keyname, valstring, oldcomm, card, status); else ffmkky(keyname, valstring, comm, card, status); ffmkey(fptr, card, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffmkyg(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ double value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char valstring[FLEN_VALUE]; char oldcomm[FLEN_COMMENT]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (ffgkey(fptr, keyname, valstring, oldcomm, status) > 0) return(*status); /* get old comment */ ffd2f(value, decim, valstring, status); /* convert value to a string */ if (!comm || comm[0] == '&') /* preserve the current comment string */ ffmkky(keyname, valstring, oldcomm, card, status); else ffmkky(keyname, valstring, comm, card, status); ffmkey(fptr, card, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffmkyd(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ double value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char valstring[FLEN_VALUE]; char oldcomm[FLEN_COMMENT]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (ffgkey(fptr, keyname, valstring, oldcomm, status) > 0) return(*status); /* get old comment */ ffd2e(value, decim, valstring, status); /* convert value to a string */ if (!comm || comm[0] == '&') /* preserve the current comment string */ ffmkky(keyname, valstring, oldcomm, card, status); else ffmkky(keyname, valstring, comm, card, status); ffmkey(fptr, card, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffmkfc(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ float *value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char valstring[FLEN_VALUE], tmpstring[FLEN_VALUE]; char oldcomm[FLEN_COMMENT]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (ffgkey(fptr, keyname, valstring, oldcomm, status) > 0) return(*status); /* get old comment */ strcpy(valstring, "(" ); ffr2f(value[0], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ", "); ffr2f(value[1], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ")"); if (!comm || comm[0] == '&') /* preserve the current comment string */ ffmkky(keyname, valstring, oldcomm, card, status); else ffmkky(keyname, valstring, comm, card, status); ffmkey(fptr, card, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffmkyc(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ float *value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char valstring[FLEN_VALUE], tmpstring[FLEN_VALUE]; char oldcomm[FLEN_COMMENT]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (ffgkey(fptr, keyname, valstring, oldcomm, status) > 0) return(*status); /* get old comment */ strcpy(valstring, "(" ); ffr2e(value[0], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ", "); ffr2e(value[1], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ")"); if (!comm || comm[0] == '&') /* preserve the current comment string */ ffmkky(keyname, valstring, oldcomm, card, status); else ffmkky(keyname, valstring, comm, card, status); ffmkey(fptr, card, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffmkfm(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ double *value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char valstring[FLEN_VALUE], tmpstring[FLEN_VALUE]; char oldcomm[FLEN_COMMENT]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (ffgkey(fptr, keyname, valstring, oldcomm, status) > 0) return(*status); /* get old comment */ strcpy(valstring, "(" ); ffd2f(value[0], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ", "); ffd2f(value[1], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ")"); if (!comm || comm[0] == '&') /* preserve the current comment string */ ffmkky(keyname, valstring, oldcomm, card, status); else ffmkky(keyname, valstring, comm, card, status); ffmkey(fptr, card, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffmkym(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ double *value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char valstring[FLEN_VALUE], tmpstring[FLEN_VALUE]; char oldcomm[FLEN_COMMENT]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (ffgkey(fptr, keyname, valstring, oldcomm, status) > 0) return(*status); /* get old comment */ strcpy(valstring, "(" ); ffd2e(value[0], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ", "); ffd2e(value[1], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ")"); if (!comm || comm[0] == '&') /* preserve the current comment string */ ffmkky(keyname, valstring, oldcomm, card, status); else ffmkky(keyname, valstring, comm, card, status); ffmkey(fptr, card, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffikyu(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ /* Insert a null-valued keyword and comment into the FITS header. */ { char valstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); strcpy(valstring," "); /* create a dummy value string */ ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffikey(fptr, card, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffikys(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ const char *value, /* I - keyword value */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char valstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); ffs2c(value, valstring, status); /* put quotes around the string */ ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffikey(fptr, card, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffikls( fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - name of keyword to write */ const char *value, /* I - keyword value */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ /* Insert a long string keyword. This routine supports the HEASARC long string convention and can insert arbitrarily long string keyword values. The value is continued over multiple keywords that have the name COMTINUE without an equal sign in column 9 of the card. This routine also supports simple string keywords which are less than 69 characters in length. */ { char valstring[FLEN_VALUE]; char card[FLEN_CARD], tmpkeyname[FLEN_CARD]; char tstring[FLEN_VALUE], *cptr; int next, remain, vlen, nquote, nchar, namelen, contin, tstatus = -1; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* construct the new keyword, and insert into header */ remain = strlen(value); /* number of characters to write out */ next = 0; /* pointer to next character to write */ /* count the number of single quote characters in the string */ nquote = 0; cptr = strchr(value, '\''); /* search for quote character */ while (cptr) /* search for quote character */ { nquote++; /* increment no. of quote characters */ cptr++; /* increment pointer to next character */ cptr = strchr(cptr, '\''); /* search for another quote char */ } strncpy(tmpkeyname, keyname, 80); tmpkeyname[80] = '\0'; cptr = tmpkeyname; while(*cptr == ' ') /* skip over leading spaces in name */ cptr++; /* determine the number of characters that will fit on the line */ /* Note: each quote character is expanded to 2 quotes */ namelen = strlen(cptr); if (namelen <= 8 && (fftkey(cptr, &tstatus) <= 0) ) { /* This a normal 8-character FITS keyword */ nchar = 68 - nquote; /* max of 68 chars fit in a FITS string value */ } else { /* This a HIERARCH keyword */ if (FSTRNCMP(cptr, "HIERARCH ", 9) && FSTRNCMP(cptr, "hierarch ", 9)) nchar = 66 - nquote - namelen; else nchar = 75 - nquote - namelen; /* don't count 'HIERARCH' twice */ } contin = 0; while (remain > 0) { strncpy(tstring, &value[next], nchar); /* copy string to temp buff */ tstring[nchar] = '\0'; ffs2c(tstring, valstring, status); /* put quotes around the string */ if (remain > nchar) /* if string is continued, put & as last char */ { vlen = strlen(valstring); nchar -= 1; /* outputting one less character now */ if (valstring[vlen-2] != '\'') valstring[vlen-2] = '&'; /* over write last char with & */ else { /* last char was a pair of single quotes, so over write both */ valstring[vlen-3] = '&'; valstring[vlen-1] = '\0'; } } if (contin) /* This is a CONTINUEd keyword */ { ffmkky("CONTINUE", valstring, comm, card, status); /* make keyword */ strncpy(&card[8], " ", 2); /* overwrite the '=' */ } else { ffmkky(keyname, valstring, comm, card, status); /* make keyword */ } ffikey(fptr, card, status); /* insert the keyword */ contin = 1; remain -= nchar; next += nchar; nchar = 68 - nquote; } return(*status); } /*--------------------------------------------------------------------------*/ int ffikyl(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ int value, /* I - keyword value */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char valstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); ffl2c(value, valstring, status); /* convert logical to 'T' or 'F' */ ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffikey(fptr, card, status); /* write the keyword*/ return(*status); } /*--------------------------------------------------------------------------*/ int ffikyj(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ LONGLONG value, /* I - keyword value */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char valstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); ffi2c(value, valstring, status); /* convert to formatted string */ ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffikey(fptr, card, status); /* write the keyword*/ return(*status); } /*--------------------------------------------------------------------------*/ int ffikyf(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ float value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char valstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); ffr2f(value, decim, valstring, status); /* convert to formatted string */ ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffikey(fptr, card, status); /* write the keyword*/ return(*status); } /*--------------------------------------------------------------------------*/ int ffikye(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ float value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char valstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); ffr2e(value, decim, valstring, status); /* convert to formatted string */ ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffikey(fptr, card, status); /* write the keyword*/ return(*status); } /*--------------------------------------------------------------------------*/ int ffikyg(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ double value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char valstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); ffd2f(value, decim, valstring, status); /* convert to formatted string */ ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffikey(fptr, card, status); /* write the keyword*/ return(*status); } /*--------------------------------------------------------------------------*/ int ffikyd(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ double value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char valstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); ffd2e(value, decim, valstring, status); /* convert to formatted string */ ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffikey(fptr, card, status); /* write the keyword*/ return(*status); } /*--------------------------------------------------------------------------*/ int ffikfc(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ float *value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char valstring[FLEN_VALUE], tmpstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); strcpy(valstring, "(" ); ffr2f(value[0], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ", "); ffr2f(value[1], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ")"); ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffikey(fptr, card, status); /* write the keyword*/ return(*status); } /*--------------------------------------------------------------------------*/ int ffikyc(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ float *value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char valstring[FLEN_VALUE], tmpstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); strcpy(valstring, "(" ); ffr2e(value[0], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ", "); ffr2e(value[1], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ")"); ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffikey(fptr, card, status); /* write the keyword*/ return(*status); } /*--------------------------------------------------------------------------*/ int ffikfm(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ double *value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char valstring[FLEN_VALUE], tmpstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); strcpy(valstring, "(" ); ffd2f(value[0], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ", "); ffd2f(value[1], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ")"); ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffikey(fptr, card, status); /* write the keyword*/ return(*status); } /*--------------------------------------------------------------------------*/ int ffikym(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ double *value, /* I - keyword value */ int decim, /* I - no of decimals */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ { char valstring[FLEN_VALUE], tmpstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); strcpy(valstring, "(" ); ffd2e(value[0], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ", "); ffd2e(value[1], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ")"); ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffikey(fptr, card, status); /* write the keyword*/ return(*status); } /*--------------------------------------------------------------------------*/ int ffirec(fitsfile *fptr, /* I - FITS file pointer */ int nkey, /* I - position to insert new keyword */ const char *card, /* I - card string value */ int *status) /* IO - error status */ { if (*status > 0) /* inherit input status value if > 0 */ return(*status); ffmaky(fptr, nkey, status); /* move to insert position */ ffikey(fptr, card, status); /* insert the keyword card */ return(*status); } /*--------------------------------------------------------------------------*/ int ffikey(fitsfile *fptr, /* I - FITS file pointer */ const char *card, /* I - card string value */ int *status) /* IO - error status */ /* insert a keyword at the position of (fptr->Fptr)->nextkey */ { int ii, len, nshift; long nblocks; LONGLONG bytepos; char *inbuff, *outbuff, *tmpbuff, buff1[FLEN_CARD], buff2[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); if ( ((fptr->Fptr)->datastart - (fptr->Fptr)->headend) == 80) /* only room for END card */ { nblocks = 1; if (ffiblk(fptr, nblocks, 0, status) > 0) /* add new 2880-byte block*/ return(*status); } /* no. keywords to shift */ nshift= (int) (( (fptr->Fptr)->headend - (fptr->Fptr)->nextkey ) / 80); strncpy(buff2, card, 80); /* copy card to output buffer */ buff2[80] = '\0'; len = strlen(buff2); /* silently replace any illegal characters with a space */ for (ii=0; ii < len; ii++) if (buff2[ii] < ' ' || buff2[ii] > 126) buff2[ii] = ' '; for (ii=len; ii < 80; ii++) /* fill buffer with spaces if necessary */ buff2[ii] = ' '; for (ii=0; ii < 8; ii++) /* make sure keyword name is uppercase */ buff2[ii] = toupper(buff2[ii]); fftkey(buff2, status); /* test keyword name contains legal chars */ /* no need to do this any more, since any illegal characters have been removed fftrec(buff2, status); */ /* test rest of keyword for legal chars */ inbuff = buff1; outbuff = buff2; bytepos = (fptr->Fptr)->nextkey; /* pointer to next keyword in header */ ffmbyt(fptr, bytepos, REPORT_EOF, status); for (ii = 0; ii < nshift; ii++) /* shift each keyword down one position */ { ffgbyt(fptr, 80, inbuff, status); /* read the current keyword */ ffmbyt(fptr, bytepos, REPORT_EOF, status); /* move back */ ffpbyt(fptr, 80, outbuff, status); /* overwrite with other buffer */ tmpbuff = inbuff; /* swap input and output buffers */ inbuff = outbuff; outbuff = tmpbuff; bytepos += 80; } ffpbyt(fptr, 80, outbuff, status); /* write the final keyword */ (fptr->Fptr)->headend += 80; /* increment the position of the END keyword */ (fptr->Fptr)->nextkey += 80; /* increment the pointer to next keyword */ return(*status); } /*--------------------------------------------------------------------------*/ int ffdkey(fitsfile *fptr, /* I - FITS file pointer */ const char *keyname, /* I - keyword name */ int *status) /* IO - error status */ /* delete a specified header keyword */ { int keypos, len; char valstring[FLEN_VALUE], comm[FLEN_COMMENT], value[FLEN_VALUE]; char message[FLEN_ERRMSG]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (ffgkey(fptr, keyname, valstring, comm, status) > 0) /* read keyword */ { sprintf(message, "Could not find the %s keyword to delete (ffdkey)", keyname); ffpmsg(message); return(*status); } /* calc position of keyword in header */ keypos = (int) ((((fptr->Fptr)->nextkey) - ((fptr->Fptr)->headstart[(fptr->Fptr)->curhdu])) / 80); ffdrec(fptr, keypos, status); /* delete the keyword */ if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* check for string value which may be continued over multiple keywords */ ffpmrk(); /* put mark on message stack; erase any messages after this */ ffc2s(valstring, value, status); /* remove quotes and trailing spaces */ if (*status == VALUE_UNDEFINED) { ffcmrk(); /* clear any spurious error messages, back to the mark */ *status = 0; } else { len = strlen(value); while (len && value[len - 1] == '&') /* ampersand used as continuation char */ { ffgcnt(fptr, value, status); if (*value) { ffdrec(fptr, keypos, status); /* delete the keyword */ len = strlen(value); } else /* a null valstring indicates no continuation */ len = 0; } } return(*status); } /*--------------------------------------------------------------------------*/ int ffdstr(fitsfile *fptr, /* I - FITS file pointer */ const char *string, /* I - keyword name */ int *status) /* IO - error status */ /* delete a specified header keyword containing the input string */ { int keypos, len; char valstring[FLEN_VALUE], comm[FLEN_COMMENT], value[FLEN_VALUE]; char card[FLEN_CARD], message[FLEN_ERRMSG]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (ffgstr(fptr, string, card, status) > 0) /* read keyword */ { sprintf(message, "Could not find the %s keyword to delete (ffdkey)", string); ffpmsg(message); return(*status); } /* calc position of keyword in header */ keypos = (int) ((((fptr->Fptr)->nextkey) - ((fptr->Fptr)->headstart[(fptr->Fptr)->curhdu])) / 80); ffdrec(fptr, keypos, status); /* delete the keyword */ /* check for string value which may be continued over multiple keywords */ ffpsvc(card, valstring, comm, status); if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* check for string value which may be continued over multiple keywords */ ffpmrk(); /* put mark on message stack; erase any messages after this */ ffc2s(valstring, value, status); /* remove quotes and trailing spaces */ if (*status == VALUE_UNDEFINED) { ffcmrk(); /* clear any spurious error messages, back to the mark */ *status = 0; } else { len = strlen(value); while (len && value[len - 1] == '&') /* ampersand used as continuation char */ { ffgcnt(fptr, value, status); if (*value) { ffdrec(fptr, keypos, status); /* delete the keyword */ len = strlen(value); } else /* a null valstring indicates no continuation */ len = 0; } } return(*status); }/*--------------------------------------------------------------------------*/ int ffdrec(fitsfile *fptr, /* I - FITS file pointer */ int keypos, /* I - position in header of keyword to delete */ int *status) /* IO - error status */ /* Delete a header keyword at position keypos. The 1st keyword is at keypos=1. */ { int ii, nshift; LONGLONG bytepos; char *inbuff, *outbuff, *tmpbuff, buff1[81], buff2[81]; char message[FLEN_ERRMSG]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); if (keypos < 1 || keypos > (fptr->Fptr)->headend - (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu] / 80 ) return(*status = KEY_OUT_BOUNDS); (fptr->Fptr)->nextkey = (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu] + (keypos - 1) * 80; nshift=(int) (( (fptr->Fptr)->headend - (fptr->Fptr)->nextkey ) / 80); /* no. keywords to shift */ if (nshift <= 0) { sprintf(message, "Cannot delete keyword number %d. It does not exist.", keypos); ffpmsg(message); return(*status = KEY_OUT_BOUNDS); } bytepos = (fptr->Fptr)->headend - 80; /* last keyword in header */ /* construct a blank keyword */ strcpy(buff2, " "); strcat(buff2, " "); inbuff = buff1; outbuff = buff2; for (ii = 0; ii < nshift; ii++) /* shift each keyword up one position */ { ffmbyt(fptr, bytepos, REPORT_EOF, status); ffgbyt(fptr, 80, inbuff, status); /* read the current keyword */ ffmbyt(fptr, bytepos, REPORT_EOF, status); ffpbyt(fptr, 80, outbuff, status); /* overwrite with next keyword */ tmpbuff = inbuff; /* swap input and output buffers */ inbuff = outbuff; outbuff = tmpbuff; bytepos -= 80; } (fptr->Fptr)->headend -= 80; /* decrement the position of the END keyword */ return(*status); } healpy-1.8.1/cfitsio/getcoli.c0000654000175000017530000021636212272000775016661 0ustar zoncaplanck00000000000000/* This file, getcoli.c, contains routines that read data elements from */ /* a FITS image or table, with short datatype. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffgpvi( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ short nulval, /* I - value for undefined pixels */ short *array, /* O - array of values that are returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Undefined elements will be set equal to NULVAL, unless NULVAL=0 in which case no checking for undefined values will be performed. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { long row; char cdummy; int nullcheck = 1; short nullvalue; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ nullvalue = nulval; /* set local variable */ fits_read_compressed_pixels(fptr, TSHORT, firstelem, nelem, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgcli(fptr, 2, row, firstelem, nelem, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgpfi( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ short *array, /* O - array of values that are returned */ char *nularray, /* O - array of null pixel flags */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any undefined pixels in the returned array will be set = 0 and the corresponding nularray value will be set = 1. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { long row; int nullcheck = 2; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_read_compressed_pixels(fptr, TSHORT, firstelem, nelem, nullcheck, NULL, array, nularray, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgcli(fptr, 2, row, firstelem, nelem, 1, 2, 0, array, nularray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffg2di(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ short nulval, /* set undefined pixels equal to this */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ short *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an entire 2-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any null values in the array will be set equal to the value of nulval, unless nulval = 0 in which case no null checking will be performed. */ { /* call the 3D reading routine, with the 3rd dimension = 1 */ ffg3di(fptr, group, nulval, ncols, naxis2, naxis1, naxis2, 1, array, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffg3di(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ short nulval, /* set undefined pixels equal to this */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG nrows, /* I - number of rows in each plane of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ LONGLONG naxis3, /* I - FITS image NAXIS3 value */ short *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an entire 3-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any null values in the array will be set equal to the value of nulval, unless nulval = 0 in which case no null checking will be performed. */ { long tablerow, ii, jj; LONGLONG nfits, narray; char cdummy; int nullcheck = 1; long inc[] = {1,1,1}; LONGLONG fpixel[] = {1,1,1}; LONGLONG lpixel[3]; short nullvalue; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ lpixel[0] = ncols; lpixel[1] = nrows; lpixel[2] = naxis3; nullvalue = nulval; /* set local variable */ fits_read_compressed_img(fptr, TSHORT, fpixel, lpixel, inc, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ tablerow=maxvalue(1,group); if (ncols == naxis1 && nrows == naxis2) /* arrays have same size? */ { /* all the image pixels are contiguous, so read all at once */ ffgcli(fptr, 2, tablerow, 1, naxis1 * naxis2 * naxis3, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } if (ncols < naxis1 || nrows < naxis2) return(*status = BAD_DIMEN); nfits = 1; /* next pixel in FITS image to read */ narray = 0; /* next pixel in output array to be filled */ /* loop over naxis3 planes in the data cube */ for (jj = 0; jj < naxis3; jj++) { /* loop over the naxis2 rows in the FITS image, */ /* reading naxis1 pixels to each row */ for (ii = 0; ii < naxis2; ii++) { if (ffgcli(fptr, 2, tablerow, nfits, naxis1, 1, 1, nulval, &array[narray], &cdummy, anynul, status) > 0) return(*status); nfits += naxis1; narray += ncols; } narray += (nrows - naxis2) * ncols; } return(*status); } /*--------------------------------------------------------------------------*/ int ffgsvi(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of the column to read (1 = 1st) */ int naxis, /* I - number of dimensions in the FITS array */ long *naxes, /* I - size of each dimension */ long *blc, /* I - 'bottom left corner' of the subsection */ long *trc, /* I - 'top right corner' of the subsection */ long *inc, /* I - increment to be applied in each dimension */ short nulval, /* I - value to set undefined pixels */ short *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read a subsection of data values from an image or a table column. This routine is set up to handle a maximum of nine dimensions. */ { long ii,i0, i1,i2,i3,i4,i5,i6,i7,i8,row,rstr,rstp,rinc; long str[9],stp[9],incr[9],dir[9]; long nelem, nultyp, ninc, numcol; LONGLONG felem, dsize[10], blcll[9], trcll[9]; int hdutype, anyf; char ldummy, msg[FLEN_ERRMSG]; int nullcheck = 1; short nullvalue; if (naxis < 1 || naxis > 9) { sprintf(msg, "NAXIS = %d in call to ffgsvi is out of range", naxis); ffpmsg(msg); return(*status = BAD_DIMEN); } if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ for (ii=0; ii < naxis; ii++) { blcll[ii] = blc[ii]; trcll[ii] = trc[ii]; } nullvalue = nulval; /* set local variable */ fits_read_compressed_img(fptr, TSHORT, blcll, trcll, inc, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* if this is a primary array, then the input COLNUM parameter should be interpreted as the row number, and we will alway read the image data from column 2 (any group parameters are in column 1). */ if (ffghdt(fptr, &hdutype, status) > 0) return(*status); if (hdutype == IMAGE_HDU) { /* this is a primary array, or image extension */ if (colnum == 0) { rstr = 1; rstp = 1; } else { rstr = colnum; rstp = colnum; } rinc = 1; numcol = 2; } else { /* this is a table, so the row info is in the (naxis+1) elements */ rstr = blc[naxis]; rstp = trc[naxis]; rinc = inc[naxis]; numcol = colnum; } nultyp = 1; if (anynul) *anynul = FALSE; i0 = 0; for (ii = 0; ii < 9; ii++) { str[ii] = 1; stp[ii] = 1; incr[ii] = 1; dsize[ii] = 1; dir[ii] = 1; } for (ii = 0; ii < naxis; ii++) { if (trc[ii] < blc[ii]) { if (hdutype == IMAGE_HDU) { dir[ii] = -1; } else { sprintf(msg, "ffgsvi: illegal range specified for axis %ld", ii + 1); ffpmsg(msg); return(*status = BAD_PIX_NUM); } } str[ii] = blc[ii]; stp[ii] = trc[ii]; incr[ii] = inc[ii]; dsize[ii + 1] = dsize[ii] * naxes[ii]; dsize[ii] = dsize[ii] * dir[ii]; } dsize[naxis] = dsize[naxis] * dir[naxis]; if (naxis == 1 && naxes[0] == 1) { /* This is not a vector column, so read all the rows at once */ nelem = (rstp - rstr) / rinc + 1; ninc = rinc; rstp = rstr; } else { /* have to read each row individually, in all dimensions */ nelem = (stp[0]*dir[0] - str[0]*dir[0]) / inc[0] + 1; ninc = incr[0] * dir[0]; } for (row = rstr; row <= rstp; row += rinc) { for (i8 = str[8]*dir[8]; i8 <= stp[8]*dir[8]; i8 += incr[8]) { for (i7 = str[7]*dir[7]; i7 <= stp[7]*dir[7]; i7 += incr[7]) { for (i6 = str[6]*dir[6]; i6 <= stp[6]*dir[6]; i6 += incr[6]) { for (i5 = str[5]*dir[5]; i5 <= stp[5]*dir[5]; i5 += incr[5]) { for (i4 = str[4]*dir[4]; i4 <= stp[4]*dir[4]; i4 += incr[4]) { for (i3 = str[3]*dir[3]; i3 <= stp[3]*dir[3]; i3 += incr[3]) { for (i2 = str[2]*dir[2]; i2 <= stp[2]*dir[2]; i2 += incr[2]) { for (i1 = str[1]*dir[1]; i1 <= stp[1]*dir[1]; i1 += incr[1]) { felem=str[0] + (i1 - dir[1]) * dsize[1] + (i2 - dir[2]) * dsize[2] + (i3 - dir[3]) * dsize[3] + (i4 - dir[4]) * dsize[4] + (i5 - dir[5]) * dsize[5] + (i6 - dir[6]) * dsize[6] + (i7 - dir[7]) * dsize[7] + (i8 - dir[8]) * dsize[8]; if ( ffgcli(fptr, numcol, row, felem, nelem, ninc, nultyp, nulval, &array[i0], &ldummy, &anyf, status) > 0) return(*status); if (anyf && anynul) *anynul = TRUE; i0 += nelem; } } } } } } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffgsfi(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of the column to read (1 = 1st) */ int naxis, /* I - number of dimensions in the FITS array */ long *naxes, /* I - size of each dimension */ long *blc, /* I - 'bottom left corner' of the subsection */ long *trc, /* I - 'top right corner' of the subsection */ long *inc, /* I - increment to be applied in each dimension */ short *array, /* O - array to be filled and returned */ char *flagval, /* O - set to 1 if corresponding value is null */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read a subsection of data values from an image or a table column. This routine is set up to handle a maximum of nine dimensions. */ { long ii,i0, i1,i2,i3,i4,i5,i6,i7,i8,row,rstr,rstp,rinc; long str[9],stp[9],incr[9],dsize[10]; LONGLONG blcll[9], trcll[9]; long felem, nelem, nultyp, ninc, numcol; int hdutype, anyf; short nulval = 0; char msg[FLEN_ERRMSG]; int nullcheck = 2; if (naxis < 1 || naxis > 9) { sprintf(msg, "NAXIS = %d in call to ffgsvi is out of range", naxis); ffpmsg(msg); return(*status = BAD_DIMEN); } if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ for (ii=0; ii < naxis; ii++) { blcll[ii] = blc[ii]; trcll[ii] = trc[ii]; } fits_read_compressed_img(fptr, TSHORT, blcll, trcll, inc, nullcheck, NULL, array, flagval, anynul, status); return(*status); } /* if this is a primary array, then the input COLNUM parameter should be interpreted as the row number, and we will alway read the image data from column 2 (any group parameters are in column 1). */ if (ffghdt(fptr, &hdutype, status) > 0) return(*status); if (hdutype == IMAGE_HDU) { /* this is a primary array, or image extension */ if (colnum == 0) { rstr = 1; rstp = 1; } else { rstr = colnum; rstp = colnum; } rinc = 1; numcol = 2; } else { /* this is a table, so the row info is in the (naxis+1) elements */ rstr = blc[naxis]; rstp = trc[naxis]; rinc = inc[naxis]; numcol = colnum; } nultyp = 2; if (anynul) *anynul = FALSE; i0 = 0; for (ii = 0; ii < 9; ii++) { str[ii] = 1; stp[ii] = 1; incr[ii] = 1; dsize[ii] = 1; } for (ii = 0; ii < naxis; ii++) { if (trc[ii] < blc[ii]) { sprintf(msg, "ffgsvi: illegal range specified for axis %ld", ii + 1); ffpmsg(msg); return(*status = BAD_PIX_NUM); } str[ii] = blc[ii]; stp[ii] = trc[ii]; incr[ii] = inc[ii]; dsize[ii + 1] = dsize[ii] * naxes[ii]; } if (naxis == 1 && naxes[0] == 1) { /* This is not a vector column, so read all the rows at once */ nelem = (rstp - rstr) / rinc + 1; ninc = rinc; rstp = rstr; } else { /* have to read each row individually, in all dimensions */ nelem = (stp[0] - str[0]) / inc[0] + 1; ninc = incr[0]; } for (row = rstr; row <= rstp; row += rinc) { for (i8 = str[8]; i8 <= stp[8]; i8 += incr[8]) { for (i7 = str[7]; i7 <= stp[7]; i7 += incr[7]) { for (i6 = str[6]; i6 <= stp[6]; i6 += incr[6]) { for (i5 = str[5]; i5 <= stp[5]; i5 += incr[5]) { for (i4 = str[4]; i4 <= stp[4]; i4 += incr[4]) { for (i3 = str[3]; i3 <= stp[3]; i3 += incr[3]) { for (i2 = str[2]; i2 <= stp[2]; i2 += incr[2]) { for (i1 = str[1]; i1 <= stp[1]; i1 += incr[1]) { felem=str[0] + (i1 - 1) * dsize[1] + (i2 - 1) * dsize[2] + (i3 - 1) * dsize[3] + (i4 - 1) * dsize[4] + (i5 - 1) * dsize[5] + (i6 - 1) * dsize[6] + (i7 - 1) * dsize[7] + (i8 - 1) * dsize[8]; if ( ffgcli(fptr, numcol, row, felem, nelem, ninc, nultyp, nulval, &array[i0], &flagval[i0], &anyf, status) > 0) return(*status); if (anyf && anynul) *anynul = TRUE; i0 += nelem; } } } } } } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffggpi( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ long firstelem, /* I - first vector element to read (1 = 1st) */ long nelem, /* I - number of values to read */ short *array, /* O - array of values that are returned */ int *status) /* IO - error status */ /* Read an array of group parameters from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). */ { long row; int idummy; char cdummy; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgcli(fptr, 1, row, firstelem, nelem, 1, 1, 0, array, &cdummy, &idummy, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcvi(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ short nulval, /* I - value for null pixels */ short *array, /* O - array of values that are read */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Any undefined pixels will be set equal to the value of 'nulval' unless nulval = 0 in which case no checks for undefined pixels will be made. */ { char cdummy; ffgcli(fptr, colnum, firstrow, firstelem, nelem, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcfi(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ short *array, /* O - array of values that are read */ char *nularray, /* O - array of flags: 1 if null pixel; else 0 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Nularray will be set = 1 if the corresponding array pixel is undefined, otherwise nularray will = 0. */ { short dummy = 0; ffgcli(fptr, colnum, firstrow, firstelem, nelem, 1, 2, dummy, array, nularray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcli( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ long elemincre, /* I - pixel increment; e.g., 2 = every other */ int nultyp, /* I - null value handling code: */ /* 1: set undefined pixels = nulval */ /* 2: set nularray=1 for undefined pixels */ short nulval, /* I - value for null pixels if nultyp = 1 */ short *array, /* O - array of values that are read */ char *nularray, /* O - array of flags = 1 if nultyp = 2 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. The column number may refer to a real column in an ASCII or binary table, or it may refer be a virtual column in a 1 or more grouped FITS primary array or image extension. FITSIO treats a primary array as a binary table with 2 vector columns: the first column contains the group parameters (often with length = 0) and the second column contains the array of image pixels. Each row of the table represents a group in the case of multigroup FITS images. The output array of values will be converted from the datatype of the column and will be scaled by the FITS TSCALn and TZEROn values if necessary. */ { double scale, zero, power = 1., dtemp; int tcode, maxelem2, hdutype, xcode, decimals; long twidth, incre; long ii, xwidth, ntodo; int convert, nulcheck, readcheck = 0; LONGLONG repeat, startpos, elemnum, readptr, tnull; LONGLONG rowlen, rownum, remain, next, rowincre, maxelem; char tform[20]; char message[81]; char snull[20]; /* the FITS null value if reading from ASCII table */ double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */ void *buffer; if (*status > 0 || nelem == 0) /* inherit input status value if > 0 */ return(*status); buffer = cbuff; if (anynul) *anynul = 0; if (nultyp == 2) memset(nularray, 0, (size_t) nelem); /* initialize nullarray */ /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if (elemincre < 0) readcheck = -1; /* don't do range checking in this case */ if ( ffgcprll( fptr, colnum, firstrow, firstelem, nelem, readcheck, &scale, &zero, tform, &twidth, &tcode, &maxelem2, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0 ) return(*status); maxelem = maxelem2; incre *= elemincre; /* multiply incre to just get every nth pixel */ if (tcode == TSTRING) /* setup for ASCII tables */ { /* get the number of implied decimal places if no explicit decmal point */ ffasfm(tform, &xcode, &xwidth, &decimals, status); for(ii = 0; ii < decimals; ii++) power *= 10.; } /*------------------------------------------------------------------*/ /* Decide whether to check for null values in the input FITS file: */ /*------------------------------------------------------------------*/ nulcheck = nultyp; /* by default check for null values in the FITS file */ if (nultyp == 1 && nulval == 0) nulcheck = 0; /* calling routine does not want to check for nulls */ else if (tcode%10 == 1 && /* if reading an integer column, and */ tnull == NULL_UNDEFINED) /* if a null value is not defined, */ nulcheck = 0; /* then do not check for null values. */ else if (tcode == TSHORT && (tnull > SHRT_MAX || tnull < SHRT_MIN) ) nulcheck = 0; /* Impossible null value */ else if (tcode == TBYTE && (tnull > 255 || tnull < 0) ) nulcheck = 0; /* Impossible null value */ else if (tcode == TSTRING && snull[0] == ASCII_NULL_UNDEFINED) nulcheck = 0; /*----------------------------------------------------------------------*/ /* If FITS column and output data array have same datatype, then we do */ /* not need to use a temporary buffer to store intermediate datatype. */ /*----------------------------------------------------------------------*/ convert = 1; if (tcode == TSHORT) /* Special Case: */ { /* no type convertion required, so read */ /* data directly into output buffer. */ if (nelem < (LONGLONG)INT32_MAX/2) { maxelem = nelem; } else { maxelem = INT32_MAX/2; } if (nulcheck == 0 && scale == 1. && zero == 0.) convert = 0; /* no need to scale data or find nulls */ } /*---------------------------------------------------------------------*/ /* Now read the pixels from the FITS column. If the column does not */ /* have the same datatype as the output array, then we have to read */ /* the raw values into a temporary buffer (of limited size). In */ /* the case of a vector colum read only 1 vector of values at a time */ /* then skip to the next row if more values need to be read. */ /* After reading the raw values, then call the fffXXYY routine to (1) */ /* test for undefined values, (2) convert the datatype if necessary, */ /* and (3) scale the values by the FITS TSCALn and TZEROn linear */ /* scaling parameters. */ /*---------------------------------------------------------------------*/ remain = nelem; /* remaining number of values to read */ next = 0; /* next element in array to be read */ rownum = 0; /* row number, relative to firstrow */ while (remain) { /* limit the number of pixels to read at one time to the number that will fit in the buffer or to the number of pixels that remain in the current vector, which ever is smaller. */ ntodo = (long) minvalue(remain, maxelem); if (elemincre >= 0) { ntodo = (long) minvalue(ntodo, ((repeat - elemnum - 1)/elemincre +1)); } else { ntodo = (long) minvalue(ntodo, (elemnum/(-elemincre) +1)); } readptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * (incre / elemincre)); switch (tcode) { case (TSHORT): ffgi2b(fptr, readptr, ntodo, incre, &array[next], status); if (convert) fffi2i2(&array[next], ntodo, scale, zero, nulcheck, (short) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TLONGLONG): ffgi8b(fptr, readptr, ntodo, incre, (long *) buffer, status); fffi8i2( (LONGLONG *) buffer, ntodo, scale, zero, nulcheck, tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TBYTE): ffgi1b(fptr, readptr, ntodo, incre, (unsigned char *) buffer, status); fffi1i2((unsigned char *) buffer, ntodo, scale, zero, nulcheck, (unsigned char) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TLONG): ffgi4b(fptr, readptr, ntodo, incre, (INT32BIT *) buffer, status); fffi4i2((INT32BIT *) buffer, ntodo, scale, zero, nulcheck, (INT32BIT) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TFLOAT): ffgr4b(fptr, readptr, ntodo, incre, (float *) buffer, status); fffr4i2((float *) buffer, ntodo, scale, zero, nulcheck, nulval, &nularray[next], anynul, &array[next], status); break; case (TDOUBLE): ffgr8b(fptr, readptr, ntodo, incre, (double *) buffer, status); fffr8i2((double *) buffer, ntodo, scale, zero, nulcheck, nulval, &nularray[next], anynul, &array[next], status); break; case (TSTRING): ffmbyt(fptr, readptr, REPORT_EOF, status); if (incre == twidth) /* contiguous bytes */ ffgbyt(fptr, ntodo * twidth, buffer, status); else ffgbytoff(fptr, twidth, ntodo, incre - twidth, buffer, status); fffstri2((char *) buffer, ntodo, scale, zero, twidth, power, nulcheck, snull, nulval, &nularray[next], anynul, &array[next], status); break; default: /* error trap for invalid column format */ sprintf(message, "Cannot read numbers from column %d which has format %s", colnum, tform); ffpmsg(message); if (hdutype == ASCII_TBL) return(*status = BAD_ATABLE_FORMAT); else return(*status = BAD_BTABLE_FORMAT); } /* End of switch block */ /*-------------------------*/ /* Check for fatal error */ /*-------------------------*/ if (*status > 0) /* test for error during previous read operation */ { dtemp = (double) next; if (hdutype > 0) sprintf(message, "Error reading elements %.0f thru %.0f from column %d (ffgcli).", dtemp+1, dtemp+ntodo, colnum); else sprintf(message, "Error reading elements %.0f thru %.0f from image (ffgcli).", dtemp+1, dtemp+ntodo); ffpmsg(message); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain -= ntodo; if (remain) { next += ntodo; elemnum = elemnum + (ntodo * elemincre); if (elemnum >= repeat) /* completed a row; start on later row */ { rowincre = elemnum / repeat; rownum += rowincre; elemnum = elemnum - (rowincre * repeat); } else if (elemnum < 0) /* completed a row; start on a previous row */ { rowincre = (-elemnum - 1) / repeat + 1; rownum -= rowincre; elemnum = (rowincre * repeat) + elemnum; } } } /* End of main while Loop */ /*--------------------------------*/ /* check for numerical overflow */ /*--------------------------------*/ if (*status == OVERFLOW_ERR) { ffpmsg( "Numerical overflow during type conversion while reading FITS data."); *status = NUM_OVERFLOW; } return(*status); } /*--------------------------------------------------------------------------*/ int fffi1i2(unsigned char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ unsigned char tnull, /* I - value of FITS TNULLn keyword if any */ short nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ short *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) output[ii] = (short) input[ii]; /* copy input to output */ } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = (short) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi2i2(short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ short tnull, /* I - value of FITS TNULLn keyword if any */ short nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ short *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { memcpy(output, input, ntodo * sizeof(short) ); } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi4i2(INT32BIT *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ INT32BIT tnull, /* I - value of FITS TNULLn keyword if any */ short nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ short *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < SHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (input[ii] > SHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { if (input[ii] < SHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (input[ii] > SHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi8i2(LONGLONG *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ LONGLONG tnull, /* I - value of FITS TNULLn keyword if any */ short nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ short *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < SHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (input[ii] > SHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { if (input[ii] < SHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (input[ii] > SHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffr4i2(float *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ short nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ short *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to NaN. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; short *sptr, iret; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (input[ii] > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) dvalue; } } } else /* must check for null values */ { sptr = (short *) input; #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS sptr++; /* point to MSBs */ #endif if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++, sptr += 2) { if (0 != (iret = fnan(*sptr) ) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ output[ii] = 0; } else { if (input[ii] < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (input[ii] > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++, sptr += 2) { if (0 != (iret = fnan(*sptr) ) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ { if (zero < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (zero > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) zero; } } else { dvalue = input[ii] * scale + zero; if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffr8i2(double *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ short nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ short *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to NaN. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; short *sptr, iret; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (input[ii] > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) dvalue; } } } else /* must check for null values */ { sptr = (short *) input; #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS sptr += 3; /* point to MSBs */ #endif if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++, sptr += 4) { if (0 != (iret = dnan(*sptr)) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ output[ii] = 0; } else { if (input[ii] < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (input[ii] > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++, sptr += 4) { if (0 != (iret = dnan(*sptr)) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ { if (zero < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (zero > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) zero; } } else { dvalue = input[ii] * scale + zero; if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffstri2(char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ long twidth, /* I - width of each substring of chars */ double implipower, /* I - power of 10 of implied decimal */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ char *snull, /* I - value of FITS null string, if any */ short nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ short *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to snull. If nullcheck= 0, then no special checking for nulls is performed. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { int nullen; long ii; double dvalue; char *cstring, message[81]; char *cptr, *tpos; char tempstore, chrzero = '0'; double val, power; int exponent, sign, esign, decpt; nullen = strlen(snull); cptr = input; /* pointer to start of input string */ for (ii = 0; ii < ntodo; ii++) { cstring = cptr; /* temporarily insert a null terminator at end of the string */ tpos = cptr + twidth; tempstore = *tpos; *tpos = 0; /* check if null value is defined, and if the */ /* column string is identical to the null string */ if (snull[0] != ASCII_NULL_UNDEFINED && !strncmp(snull, cptr, nullen) ) { if (nullcheck) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } cptr += twidth; } else { /* value is not the null value, so decode it */ /* remove any embedded blank characters from the string */ decpt = 0; sign = 1; val = 0.; power = 1.; exponent = 0; esign = 1; while (*cptr == ' ') /* skip leading blanks */ cptr++; if (*cptr == '-' || *cptr == '+') /* check for leading sign */ { if (*cptr == '-') sign = -1; cptr++; while (*cptr == ' ') /* skip blanks between sign and value */ cptr++; } while (*cptr >= '0' && *cptr <= '9') { val = val * 10. + *cptr - chrzero; /* accumulate the value */ cptr++; while (*cptr == ' ') /* skip embedded blanks in the value */ cptr++; } if (*cptr == '.' || *cptr == ',') /* check for decimal point */ { decpt = 1; /* set flag to show there was a decimal point */ cptr++; while (*cptr == ' ') /* skip any blanks */ cptr++; while (*cptr >= '0' && *cptr <= '9') { val = val * 10. + *cptr - chrzero; /* accumulate the value */ power = power * 10.; cptr++; while (*cptr == ' ') /* skip embedded blanks in the value */ cptr++; } } if (*cptr == 'E' || *cptr == 'D') /* check for exponent */ { cptr++; while (*cptr == ' ') /* skip blanks */ cptr++; if (*cptr == '-' || *cptr == '+') /* check for exponent sign */ { if (*cptr == '-') esign = -1; cptr++; while (*cptr == ' ') /* skip blanks between sign and exp */ cptr++; } while (*cptr >= '0' && *cptr <= '9') { exponent = exponent * 10 + *cptr - chrzero; /* accumulate exp */ cptr++; while (*cptr == ' ') /* skip embedded blanks */ cptr++; } } if (*cptr != 0) /* should end up at the null terminator */ { sprintf(message, "Cannot read number from ASCII table"); ffpmsg(message); sprintf(message, "Column field = %s.", cstring); ffpmsg(message); /* restore the char that was overwritten by the null */ *tpos = tempstore; return(*status = BAD_C2D); } if (!decpt) /* if no explicit decimal, use implied */ power = implipower; dvalue = (sign * val / power) * pow(10., (double) (esign * exponent)); dvalue = dvalue * scale + zero; /* apply the scaling */ if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) dvalue; } /* restore the char that was overwritten by the null */ *tpos = tempstore; } return(*status); } healpy-1.8.1/cfitsio/eval.y0000654000175000017530000053305012272000775016204 0ustar zoncaplanck00000000000000%{ /************************************************************************/ /* */ /* CFITSIO Lexical Parser */ /* */ /* This file is one of 3 files containing code which parses an */ /* arithmetic expression and evaluates it in the context of an input */ /* FITS file table extension. The CFITSIO lexical parser is divided */ /* into the following 3 parts/files: the CFITSIO "front-end", */ /* eval_f.c, contains the interface between the user/CFITSIO and the */ /* real core of the parser; the FLEX interpreter, eval_l.c, takes the */ /* input string and parses it into tokens and identifies the FITS */ /* information required to evaluate the expression (ie, keywords and */ /* columns); and, the BISON grammar and evaluation routines, eval_y.c, */ /* receives the FLEX output and determines and performs the actual */ /* operations. The files eval_l.c and eval_y.c are produced from */ /* running flex and bison on the files eval.l and eval.y, respectively. */ /* (flex and bison are available from any GNU archive: see www.gnu.org) */ /* */ /* The grammar rules, rather than evaluating the expression in situ, */ /* builds a tree, or Nodal, structure mapping out the order of */ /* operations and expression dependencies. This "compilation" process */ /* allows for much faster processing of multiple rows. This technique */ /* was developed by Uwe Lammers of the XMM Science Analysis System, */ /* although the CFITSIO implementation is entirely code original. */ /* */ /* */ /* Modification History: */ /* */ /* Kent Blackburn c1992 Original parser code developed for the */ /* FTOOLS software package, in particular, */ /* the fselect task. */ /* Kent Blackburn c1995 BIT column support added */ /* Peter D Wilson Feb 1998 Vector column support added */ /* Peter D Wilson May 1998 Ported to CFITSIO library. User */ /* interface routines written, in essence */ /* making fselect, fcalc, and maketime */ /* capabilities available to all tools */ /* via single function calls. */ /* Peter D Wilson Jun 1998 Major rewrite of parser core, so as to */ /* create a run-time evaluation tree, */ /* inspired by the work of Uwe Lammers, */ /* resulting in a speed increase of */ /* 10-100 times. */ /* Peter D Wilson Jul 1998 gtifilter(a,b,c,d) function added */ /* Peter D Wilson Aug 1998 regfilter(a,b,c,d) function added */ /* Peter D Wilson Jul 1999 Make parser fitsfile-independent, */ /* allowing a purely vector-based usage */ /* Craig B Markwardt Jun 2004 Add MEDIAN() function */ /* Craig B Markwardt Jun 2004 Add SUM(), and MIN/MAX() for bit arrays */ /* Craig B Markwardt Jun 2004 Allow subscripting of nX bit arrays */ /* Craig B Markwardt Jun 2004 Implement statistical functions */ /* NVALID(), AVERAGE(), and STDDEV() */ /* for integer and floating point vectors */ /* Craig B Markwardt Jun 2004 Use NULL values for range errors instead*/ /* of throwing a parse error */ /* Craig B Markwardt Oct 2004 Add ACCUM() and SEQDIFF() functions */ /* Craig B Markwardt Feb 2005 Add ANGSEP() function */ /* Craig B Markwardt Aug 2005 CIRCLE, BOX, ELLIPSE, NEAR and REGFILTER*/ /* functions now accept vector arguments */ /* Craig B Markwardt Sum 2006 Add RANDOMN() and RANDOMP() functions */ /* Craig B Markwardt Mar 2007 Allow arguments to RANDOM and RANDOMN to*/ /* determine the output dimensions */ /* Craig B Markwardt Aug 2009 Add substring STRMID() and string search*/ /* STRSTR() functions; more overflow checks*/ /* */ /************************************************************************/ #define APPROX 1.0e-7 #include "eval_defs.h" #include "region.h" #include #include #ifndef alloca #define alloca malloc #endif /* Shrink the initial stack depth to keep local data <32K (mac limit) */ /* yacc will allocate more space if needed, though. */ #define YYINITDEPTH 100 /***************************************************************/ /* Replace Bison's BACKUP macro with one that fixes a bug -- */ /* must update state after popping the stack -- and allows */ /* popping multiple terms at one time. */ /***************************************************************/ #define YYNEWBACKUP(token, value) \ do \ if (yychar == YYEMPTY ) \ { yychar = (token); \ memcpy( &yylval, &(value), sizeof(value) ); \ yychar1 = YYTRANSLATE (yychar); \ while (yylen--) YYPOPSTACK; \ yystate = *yyssp; \ goto yybackup; \ } \ else \ { yyerror ("syntax error: cannot back up"); YYERROR; } \ while (0) /***************************************************************/ /* Useful macros for accessing/testing Nodes */ /***************************************************************/ #define TEST(a) if( (a)<0 ) YYERROR #define SIZE(a) gParse.Nodes[ a ].value.nelem #define TYPE(a) gParse.Nodes[ a ].type #define OPER(a) gParse.Nodes[ a ].operation #define PROMOTE(a,b) if( TYPE(a) > TYPE(b) ) \ b = New_Unary( TYPE(a), 0, b ); \ else if( TYPE(a) < TYPE(b) ) \ a = New_Unary( TYPE(b), 0, a ); /***** Internal functions *****/ #ifdef __cplusplus extern "C" { #endif static int Alloc_Node ( void ); static void Free_Last_Node( void ); static void Evaluate_Node ( int thisNode ); static int New_Const ( int returnType, void *value, long len ); static int New_Column( int ColNum ); static int New_Offset( int ColNum, int offset ); static int New_Unary ( int returnType, int Op, int Node1 ); static int New_BinOp ( int returnType, int Node1, int Op, int Node2 ); static int New_Func ( int returnType, funcOp Op, int nNodes, int Node1, int Node2, int Node3, int Node4, int Node5, int Node6, int Node7 ); static int New_FuncSize( int returnType, funcOp Op, int nNodes, int Node1, int Node2, int Node3, int Node4, int Node5, int Node6, int Node7, int Size); static int New_Deref ( int Var, int nDim, int Dim1, int Dim2, int Dim3, int Dim4, int Dim5 ); static int New_GTI ( char *fname, int Node1, char *start, char *stop ); static int New_REG ( char *fname, int NodeX, int NodeY, char *colNames ); static int New_Vector( int subNode ); static int Close_Vec ( int vecNode ); static int Locate_Col( Node *this ); static int Test_Dims ( int Node1, int Node2 ); static void Copy_Dims ( int Node1, int Node2 ); static void Allocate_Ptrs( Node *this ); static void Do_Unary ( Node *this ); static void Do_Offset ( Node *this ); static void Do_BinOp_bit ( Node *this ); static void Do_BinOp_str ( Node *this ); static void Do_BinOp_log ( Node *this ); static void Do_BinOp_lng ( Node *this ); static void Do_BinOp_dbl ( Node *this ); static void Do_Func ( Node *this ); static void Do_Deref ( Node *this ); static void Do_GTI ( Node *this ); static void Do_REG ( Node *this ); static void Do_Vector ( Node *this ); static long Search_GTI ( double evtTime, long nGTI, double *start, double *stop, int ordered ); static char saobox (double xcen, double ycen, double xwid, double ywid, double rot, double xcol, double ycol); static char ellipse(double xcen, double ycen, double xrad, double yrad, double rot, double xcol, double ycol); static char circle (double xcen, double ycen, double rad, double xcol, double ycol); static char bnear (double x, double y, double tolerance); static char bitcmp (char *bitstrm1, char *bitstrm2); static char bitlgte(char *bits1, int oper, char *bits2); static void bitand(char *result, char *bitstrm1, char *bitstrm2); static void bitor (char *result, char *bitstrm1, char *bitstrm2); static void bitnot(char *result, char *bits); static int cstrmid(char *dest_str, int dest_len, char *src_str, int src_len, int pos); static void yyerror(char *msg); #ifdef __cplusplus } #endif %} %union { int Node; /* Index of Node */ double dbl; /* real value */ long lng; /* integer value */ char log; /* logical value */ char str[MAX_STRLEN]; /* string value */ } %token BOOLEAN /* First 3 must be in order of */ %token LONG /* increasing promotion for later use */ %token DOUBLE %token STRING %token BITSTR %token FUNCTION %token BFUNCTION /* Bit function */ %token IFUNCTION /* Integer function */ %token GTIFILTER %token REGFILTER %token COLUMN %token BCOLUMN %token SCOLUMN %token BITCOL %token ROWREF %token NULLREF %token SNULLREF %type expr %type bexpr %type sexpr %type bits %type vector %type bvector %left ',' '=' ':' '{' '}' %right '?' %left OR %left AND %left EQ NE '~' %left GT LT LTE GTE %left '+' '-' '%' %left '*' '/' %left '|' '&' %right POWER %left NOT %left INTCAST FLTCAST %left UMINUS %left '[' %right ACCUM DIFF %% lines: /* nothing ; was | lines line */ | lines line ; line: '\n' {} | expr '\n' { if( $1<0 ) { yyerror("Couldn't build node structure: out of memory?"); YYERROR; } gParse.resultNode = $1; } | bexpr '\n' { if( $1<0 ) { yyerror("Couldn't build node structure: out of memory?"); YYERROR; } gParse.resultNode = $1; } | sexpr '\n' { if( $1<0 ) { yyerror("Couldn't build node structure: out of memory?"); YYERROR; } gParse.resultNode = $1; } | bits '\n' { if( $1<0 ) { yyerror("Couldn't build node structure: out of memory?"); YYERROR; } gParse.resultNode = $1; } | error '\n' { yyerrok; } ; bvector: '{' bexpr { $$ = New_Vector( $2 ); TEST($$); } | bvector ',' bexpr { if( gParse.Nodes[$1].nSubNodes >= MAXSUBS ) { $1 = Close_Vec( $1 ); TEST($1); $$ = New_Vector( $1 ); TEST($$); } else { $$ = $1; } gParse.Nodes[$$].SubNodes[ gParse.Nodes[$$].nSubNodes++ ] = $3; } ; vector: '{' expr { $$ = New_Vector( $2 ); TEST($$); } | vector ',' expr { if( TYPE($1) < TYPE($3) ) TYPE($1) = TYPE($3); if( gParse.Nodes[$1].nSubNodes >= MAXSUBS ) { $1 = Close_Vec( $1 ); TEST($1); $$ = New_Vector( $1 ); TEST($$); } else { $$ = $1; } gParse.Nodes[$$].SubNodes[ gParse.Nodes[$$].nSubNodes++ ] = $3; } | vector ',' bexpr { if( gParse.Nodes[$1].nSubNodes >= MAXSUBS ) { $1 = Close_Vec( $1 ); TEST($1); $$ = New_Vector( $1 ); TEST($$); } else { $$ = $1; } gParse.Nodes[$$].SubNodes[ gParse.Nodes[$$].nSubNodes++ ] = $3; } | bvector ',' expr { TYPE($1) = TYPE($3); if( gParse.Nodes[$1].nSubNodes >= MAXSUBS ) { $1 = Close_Vec( $1 ); TEST($1); $$ = New_Vector( $1 ); TEST($$); } else { $$ = $1; } gParse.Nodes[$$].SubNodes[ gParse.Nodes[$$].nSubNodes++ ] = $3; } ; expr: vector '}' { $$ = Close_Vec( $1 ); TEST($$); } ; bexpr: bvector '}' { $$ = Close_Vec( $1 ); TEST($$); } ; bits: BITSTR { $$ = New_Const( BITSTR, $1, strlen($1)+1 ); TEST($$); SIZE($$) = strlen($1); } | BITCOL { $$ = New_Column( $1 ); TEST($$); } | BITCOL '{' expr '}' { if( TYPE($3) != LONG || OPER($3) != CONST_OP ) { yyerror("Offset argument must be a constant integer"); YYERROR; } $$ = New_Offset( $1, $3 ); TEST($$); } | bits '&' bits { $$ = New_BinOp( BITSTR, $1, '&', $3 ); TEST($$); SIZE($$) = ( SIZE($1)>SIZE($3) ? SIZE($1) : SIZE($3) ); } | bits '|' bits { $$ = New_BinOp( BITSTR, $1, '|', $3 ); TEST($$); SIZE($$) = ( SIZE($1)>SIZE($3) ? SIZE($1) : SIZE($3) ); } | bits '+' bits { if (SIZE($1)+SIZE($3) >= MAX_STRLEN) { yyerror("Combined bit string size exceeds " MAX_STRLEN_S " bits"); YYERROR; } $$ = New_BinOp( BITSTR, $1, '+', $3 ); TEST($$); SIZE($$) = SIZE($1) + SIZE($3); } | bits '[' expr ']' { $$ = New_Deref( $1, 1, $3, 0, 0, 0, 0 ); TEST($$); } | bits '[' expr ',' expr ']' { $$ = New_Deref( $1, 2, $3, $5, 0, 0, 0 ); TEST($$); } | bits '[' expr ',' expr ',' expr ']' { $$ = New_Deref( $1, 3, $3, $5, $7, 0, 0 ); TEST($$); } | bits '[' expr ',' expr ',' expr ',' expr ']' { $$ = New_Deref( $1, 4, $3, $5, $7, $9, 0 ); TEST($$); } | bits '[' expr ',' expr ',' expr ',' expr ',' expr ']' { $$ = New_Deref( $1, 5, $3, $5, $7, $9, $11 ); TEST($$); } | NOT bits { $$ = New_Unary( BITSTR, NOT, $2 ); TEST($$); } | '(' bits ')' { $$ = $2; } ; expr: LONG { $$ = New_Const( LONG, &($1), sizeof(long) ); TEST($$); } | DOUBLE { $$ = New_Const( DOUBLE, &($1), sizeof(double) ); TEST($$); } | COLUMN { $$ = New_Column( $1 ); TEST($$); } | COLUMN '{' expr '}' { if( TYPE($3) != LONG || OPER($3) != CONST_OP ) { yyerror("Offset argument must be a constant integer"); YYERROR; } $$ = New_Offset( $1, $3 ); TEST($$); } | ROWREF { $$ = New_Func( LONG, row_fct, 0, 0, 0, 0, 0, 0, 0, 0 ); } | NULLREF { $$ = New_Func( LONG, null_fct, 0, 0, 0, 0, 0, 0, 0, 0 ); } | expr '%' expr { PROMOTE($1,$3); $$ = New_BinOp( TYPE($1), $1, '%', $3 ); TEST($$); } | expr '+' expr { PROMOTE($1,$3); $$ = New_BinOp( TYPE($1), $1, '+', $3 ); TEST($$); } | expr '-' expr { PROMOTE($1,$3); $$ = New_BinOp( TYPE($1), $1, '-', $3 ); TEST($$); } | expr '*' expr { PROMOTE($1,$3); $$ = New_BinOp( TYPE($1), $1, '*', $3 ); TEST($$); } | expr '/' expr { PROMOTE($1,$3); $$ = New_BinOp( TYPE($1), $1, '/', $3 ); TEST($$); } | expr POWER expr { PROMOTE($1,$3); $$ = New_BinOp( TYPE($1), $1, POWER, $3 ); TEST($$); } | '+' expr %prec UMINUS { $$ = $2; } | '-' expr %prec UMINUS { $$ = New_Unary( TYPE($2), UMINUS, $2 ); TEST($$); } | '(' expr ')' { $$ = $2; } | expr '*' bexpr { $3 = New_Unary( TYPE($1), 0, $3 ); $$ = New_BinOp( TYPE($1), $1, '*', $3 ); TEST($$); } | bexpr '*' expr { $1 = New_Unary( TYPE($3), 0, $1 ); $$ = New_BinOp( TYPE($3), $1, '*', $3 ); TEST($$); } | bexpr '?' expr ':' expr { PROMOTE($3,$5); if( ! Test_Dims($3,$5) ) { yyerror("Incompatible dimensions in '?:' arguments"); YYERROR; } $$ = New_Func( 0, ifthenelse_fct, 3, $3, $5, $1, 0, 0, 0, 0 ); TEST($$); if( SIZE($3)=SIZE($4) && Test_Dims( $2, $4 ) ) { PROMOTE($2,$4); $$ = New_Func( 0, defnull_fct, 2, $2, $4, 0, 0, 0, 0, 0 ); TEST($$); } else { yyerror("Dimensions of DEFNULL arguments " "are not compatible"); YYERROR; } } else if (FSTRCMP($1,"ARCTAN2(") == 0) { if( TYPE($2) != DOUBLE ) $2 = New_Unary( DOUBLE, 0, $2 ); if( TYPE($4) != DOUBLE ) $4 = New_Unary( DOUBLE, 0, $4 ); if( Test_Dims( $2, $4 ) ) { $$ = New_Func( 0, atan2_fct, 2, $2, $4, 0, 0, 0, 0, 0 ); TEST($$); if( SIZE($2)=SIZE($4) && Test_Dims( $2, $4 ) ) { $$ = New_Func( 0, defnull_fct, 2, $2, $4, 0, 0, 0, 0, 0 ); TEST($$); } else { yyerror("Dimensions of DEFNULL arguments are not compatible"); YYERROR; } } else { yyerror("Boolean Function(expr,expr) not supported"); YYERROR; } } | BFUNCTION expr ',' expr ',' expr ')' { if( TYPE($2) != DOUBLE ) $2 = New_Unary( DOUBLE, 0, $2 ); if( TYPE($4) != DOUBLE ) $4 = New_Unary( DOUBLE, 0, $4 ); if( TYPE($6) != DOUBLE ) $6 = New_Unary( DOUBLE, 0, $6 ); if( ! (Test_Dims( $2, $4 ) && Test_Dims( $4, $6 ) ) ) { yyerror("Dimensions of NEAR arguments " "are not compatible"); YYERROR; } else { if (FSTRCMP($1,"NEAR(") == 0) { $$ = New_Func( BOOLEAN, near_fct, 3, $2, $4, $6, 0, 0, 0, 0 ); } else { yyerror("Boolean Function not supported"); YYERROR; } TEST($$); if( SIZE($$)= MAX_STRLEN) { yyerror("Combined string size exceeds " MAX_STRLEN_S " characters"); YYERROR; } $$ = New_BinOp( STRING, $1, '+', $3 ); TEST($$); SIZE($$) = SIZE($1) + SIZE($3); } | bexpr '?' sexpr ':' sexpr { int outSize; if( SIZE($1)!=1 ) { yyerror("Cannot have a vector string column"); YYERROR; } /* Since the output can be calculated now, as a constant scalar, we must precalculate the output size, in order to avoid an overflow. */ outSize = SIZE($3); if (SIZE($5) > outSize) outSize = SIZE($5); $$ = New_FuncSize( 0, ifthenelse_fct, 3, $3, $5, $1, 0, 0, 0, 0, outSize); TEST($$); if( SIZE($3) outSize) outSize = SIZE($4); $$ = New_FuncSize( 0, defnull_fct, 2, $2, $4, 0, 0, 0, 0, 0, outSize ); TEST($$); if( SIZE($4)>SIZE($2) ) SIZE($$) = SIZE($4); } else { yyerror("Function(string,string) not supported"); YYERROR; } } | FUNCTION sexpr ',' expr ',' expr ')' { if (FSTRCMP($1,"STRMID(") == 0) { int len; if( TYPE($4) != LONG || SIZE($4) != 1 || TYPE($6) != LONG || SIZE($6) != 1) { yyerror("When using STRMID(S,P,N), P and N must be integers (and not vector columns)"); YYERROR; } if (OPER($6) == CONST_OP) { /* Constant value: use that directly */ len = (gParse.Nodes[$6].value.data.lng); } else { /* Variable value: use the maximum possible (from $2) */ len = SIZE($2); } if (len <= 0 || len >= MAX_STRLEN) { yyerror("STRMID(S,P,N), N must be 1-" MAX_STRLEN_S); YYERROR; } $$ = New_FuncSize( 0, strmid_fct, 3, $2, $4,$6,0,0,0,0,len); TEST($$); } else { yyerror("Function(string,expr,expr) not supported"); YYERROR; } } ; %% /*************************************************************************/ /* Start of "New" routines which build the expression Nodal structure */ /*************************************************************************/ static int Alloc_Node( void ) { /* Use this for allocation to guarantee *Nodes */ Node *newNodePtr; /* survives on failure, making it still valid */ /* while working our way out of this error */ if( gParse.nNodes == gParse.nNodesAlloc ) { if( gParse.Nodes ) { gParse.nNodesAlloc += gParse.nNodesAlloc; newNodePtr = (Node *)realloc( gParse.Nodes, sizeof(Node)*gParse.nNodesAlloc ); } else { gParse.nNodesAlloc = 100; newNodePtr = (Node *)malloc ( sizeof(Node)*gParse.nNodesAlloc ); } if( newNodePtr ) { gParse.Nodes = newNodePtr; } else { gParse.status = MEMORY_ALLOCATION; return( -1 ); } } return ( gParse.nNodes++ ); } static void Free_Last_Node( void ) { if( gParse.nNodes ) gParse.nNodes--; } static int New_Const( int returnType, void *value, long len ) { Node *this; int n; n = Alloc_Node(); if( n>=0 ) { this = gParse.Nodes + n; this->operation = CONST_OP; /* Flag a constant */ this->DoOp = NULL; this->nSubNodes = 0; this->type = returnType; memcpy( &(this->value.data), value, len ); this->value.undef = NULL; this->value.nelem = 1; this->value.naxis = 1; this->value.naxes[0] = 1; } return(n); } static int New_Column( int ColNum ) { Node *this; int n, i; n = Alloc_Node(); if( n>=0 ) { this = gParse.Nodes + n; this->operation = -ColNum; this->DoOp = NULL; this->nSubNodes = 0; this->type = gParse.varData[ColNum].type; this->value.nelem = gParse.varData[ColNum].nelem; this->value.naxis = gParse.varData[ColNum].naxis; for( i=0; ivalue.naxes[i] = gParse.varData[ColNum].naxes[i]; } return(n); } static int New_Offset( int ColNum, int offsetNode ) { Node *this; int n, i, colNode; colNode = New_Column( ColNum ); if( colNode<0 ) return(-1); n = Alloc_Node(); if( n>=0 ) { this = gParse.Nodes + n; this->operation = '{'; this->DoOp = Do_Offset; this->nSubNodes = 2; this->SubNodes[0] = colNode; this->SubNodes[1] = offsetNode; this->type = gParse.varData[ColNum].type; this->value.nelem = gParse.varData[ColNum].nelem; this->value.naxis = gParse.varData[ColNum].naxis; for( i=0; ivalue.naxes[i] = gParse.varData[ColNum].naxes[i]; } return(n); } static int New_Unary( int returnType, int Op, int Node1 ) { Node *this, *that; int i,n; if( Node1<0 ) return(-1); that = gParse.Nodes + Node1; if( !Op ) Op = returnType; if( (Op==DOUBLE || Op==FLTCAST) && that->type==DOUBLE ) return( Node1 ); if( (Op==LONG || Op==INTCAST) && that->type==LONG ) return( Node1 ); if( (Op==BOOLEAN ) && that->type==BOOLEAN ) return( Node1 ); n = Alloc_Node(); if( n>=0 ) { this = gParse.Nodes + n; this->operation = Op; this->DoOp = Do_Unary; this->nSubNodes = 1; this->SubNodes[0] = Node1; this->type = returnType; that = gParse.Nodes + Node1; /* Reset in case .Nodes mv'd */ this->value.nelem = that->value.nelem; this->value.naxis = that->value.naxis; for( i=0; ivalue.naxis; i++ ) this->value.naxes[i] = that->value.naxes[i]; if( that->operation==CONST_OP ) this->DoOp( this ); } return( n ); } static int New_BinOp( int returnType, int Node1, int Op, int Node2 ) { Node *this,*that1,*that2; int n,i,constant; if( Node1<0 || Node2<0 ) return(-1); n = Alloc_Node(); if( n>=0 ) { this = gParse.Nodes + n; this->operation = Op; this->nSubNodes = 2; this->SubNodes[0]= Node1; this->SubNodes[1]= Node2; this->type = returnType; that1 = gParse.Nodes + Node1; that2 = gParse.Nodes + Node2; constant = (that1->operation==CONST_OP && that2->operation==CONST_OP); if( that1->type!=STRING && that1->type!=BITSTR ) if( !Test_Dims( Node1, Node2 ) ) { Free_Last_Node(); yyerror("Array sizes/dims do not match for binary operator"); return(-1); } if( that1->value.nelem == 1 ) that1 = that2; this->value.nelem = that1->value.nelem; this->value.naxis = that1->value.naxis; for( i=0; ivalue.naxis; i++ ) this->value.naxes[i] = that1->value.naxes[i]; if ( Op == ACCUM && that1->type == BITSTR ) { /* ACCUM is rank-reducing on bit strings */ this->value.nelem = 1; this->value.naxis = 1; this->value.naxes[0] = 1; } /* Both subnodes should be of same time */ switch( that1->type ) { case BITSTR: this->DoOp = Do_BinOp_bit; break; case STRING: this->DoOp = Do_BinOp_str; break; case BOOLEAN: this->DoOp = Do_BinOp_log; break; case LONG: this->DoOp = Do_BinOp_lng; break; case DOUBLE: this->DoOp = Do_BinOp_dbl; break; } if( constant ) this->DoOp( this ); } return( n ); } static int New_Func( int returnType, funcOp Op, int nNodes, int Node1, int Node2, int Node3, int Node4, int Node5, int Node6, int Node7 ) { return New_FuncSize(returnType, Op, nNodes, Node1, Node2, Node3, Node4, Node5, Node6, Node7, 0); } static int New_FuncSize( int returnType, funcOp Op, int nNodes, int Node1, int Node2, int Node3, int Node4, int Node5, int Node6, int Node7, int Size ) /* If returnType==0 , use Node1's type and vector sizes as returnType, */ /* else return a single value of type returnType */ { Node *this, *that; int i,n,constant; if( Node1<0 || Node2<0 || Node3<0 || Node4<0 || Node5<0 || Node6<0 || Node7<0 ) return(-1); n = Alloc_Node(); if( n>=0 ) { this = gParse.Nodes + n; this->operation = (int)Op; this->DoOp = Do_Func; this->nSubNodes = nNodes; this->SubNodes[0] = Node1; this->SubNodes[1] = Node2; this->SubNodes[2] = Node3; this->SubNodes[3] = Node4; this->SubNodes[4] = Node5; this->SubNodes[5] = Node6; this->SubNodes[6] = Node7; i = constant = nNodes; /* Functions with zero params are not const */ if (Op == poirnd_fct) constant = 0; /* Nor is Poisson deviate */ while( i-- ) constant = ( constant && OPER(this->SubNodes[i]) == CONST_OP ); if( returnType ) { this->type = returnType; this->value.nelem = 1; this->value.naxis = 1; this->value.naxes[0] = 1; } else { that = gParse.Nodes + Node1; this->type = that->type; this->value.nelem = that->value.nelem; this->value.naxis = that->value.naxis; for( i=0; ivalue.naxis; i++ ) this->value.naxes[i] = that->value.naxes[i]; } /* Force explicit size before evaluating */ if (Size > 0) this->value.nelem = Size; if( constant ) this->DoOp( this ); } return( n ); } static int New_Deref( int Var, int nDim, int Dim1, int Dim2, int Dim3, int Dim4, int Dim5 ) { int n, idx, constant; long elem=0; Node *this, *theVar, *theDim[MAXDIMS]; if( Var<0 || Dim1<0 || Dim2<0 || Dim3<0 || Dim4<0 || Dim5<0 ) return(-1); theVar = gParse.Nodes + Var; if( theVar->operation==CONST_OP || theVar->value.nelem==1 ) { yyerror("Cannot index a scalar value"); return(-1); } n = Alloc_Node(); if( n>=0 ) { this = gParse.Nodes + n; this->nSubNodes = nDim+1; theVar = gParse.Nodes + (this->SubNodes[0]=Var); theDim[0] = gParse.Nodes + (this->SubNodes[1]=Dim1); theDim[1] = gParse.Nodes + (this->SubNodes[2]=Dim2); theDim[2] = gParse.Nodes + (this->SubNodes[3]=Dim3); theDim[3] = gParse.Nodes + (this->SubNodes[4]=Dim4); theDim[4] = gParse.Nodes + (this->SubNodes[5]=Dim5); constant = theVar->operation==CONST_OP; for( idx=0; idxoperation==CONST_OP); for( idx=0; idxvalue.nelem>1 ) { Free_Last_Node(); yyerror("Cannot use an array as an index value"); return(-1); } else if( theDim[idx]->type!=LONG ) { Free_Last_Node(); yyerror("Index value must be an integer type"); return(-1); } this->operation = '['; this->DoOp = Do_Deref; this->type = theVar->type; if( theVar->value.naxis == nDim ) { /* All dimensions specified */ this->value.nelem = 1; this->value.naxis = 1; this->value.naxes[0] = 1; } else if( nDim==1 ) { /* Dereference only one dimension */ elem=1; this->value.naxis = theVar->value.naxis-1; for( idx=0; idxvalue.naxis; idx++ ) { elem *= ( this->value.naxes[idx] = theVar->value.naxes[idx] ); } this->value.nelem = elem; } else { Free_Last_Node(); yyerror("Must specify just one or all indices for vector"); return(-1); } if( constant ) this->DoOp( this ); } return(n); } extern int yyGetVariable( char *varName, YYSTYPE *varVal ); static int New_GTI( char *fname, int Node1, char *start, char *stop ) { fitsfile *fptr; Node *this, *that0, *that1; int type,i,n, startCol, stopCol, Node0; int hdutype, hdunum, evthdu, samefile, extvers, movetotype, tstat; char extname[100]; long nrows; double timeZeroI[2], timeZeroF[2], dt, timeSpan; char xcol[20], xexpr[20]; YYSTYPE colVal; if( Node1==-99 ) { type = yyGetVariable( "TIME", &colVal ); if( type==COLUMN ) { Node1 = New_Column( (int)colVal.lng ); } else { yyerror("Could not build TIME column for GTIFILTER"); return(-1); } } Node1 = New_Unary( DOUBLE, 0, Node1 ); Node0 = Alloc_Node(); /* This will hold the START/STOP times */ if( Node1<0 || Node0<0 ) return(-1); /* Record current HDU number in case we need to move within this file */ fptr = gParse.def_fptr; ffghdn( fptr, &evthdu ); /* Look for TIMEZERO keywords in current extension */ tstat = 0; if( ffgkyd( fptr, "TIMEZERO", timeZeroI, NULL, &tstat ) ) { tstat = 0; if( ffgkyd( fptr, "TIMEZERI", timeZeroI, NULL, &tstat ) ) { timeZeroI[0] = timeZeroF[0] = 0.0; } else if( ffgkyd( fptr, "TIMEZERF", timeZeroF, NULL, &tstat ) ) { timeZeroF[0] = 0.0; } } else { timeZeroF[0] = 0.0; } /* Resolve filename parameter */ switch( fname[0] ) { case '\0': samefile = 1; hdunum = 1; break; case '[': samefile = 1; i = 1; while( fname[i] != '\0' && fname[i] != ']' ) i++; if( fname[i] ) { fname[i] = '\0'; fname++; ffexts( fname, &hdunum, extname, &extvers, &movetotype, xcol, xexpr, &gParse.status ); if( *extname ) { ffmnhd( fptr, movetotype, extname, extvers, &gParse.status ); ffghdn( fptr, &hdunum ); } else if( hdunum ) { ffmahd( fptr, ++hdunum, &hdutype, &gParse.status ); } else if( !gParse.status ) { yyerror("Cannot use primary array for GTI filter"); return( -1 ); } } else { yyerror("File extension specifier lacks closing ']'"); return( -1 ); } break; case '+': samefile = 1; hdunum = atoi( fname ) + 1; if( hdunum>1 ) ffmahd( fptr, hdunum, &hdutype, &gParse.status ); else { yyerror("Cannot use primary array for GTI filter"); return( -1 ); } break; default: samefile = 0; if( ! ffopen( &fptr, fname, READONLY, &gParse.status ) ) ffghdn( fptr, &hdunum ); break; } if( gParse.status ) return(-1); /* If at primary, search for GTI extension */ if( hdunum==1 ) { while( 1 ) { hdunum++; if( ffmahd( fptr, hdunum, &hdutype, &gParse.status ) ) break; if( hdutype==IMAGE_HDU ) continue; tstat = 0; if( ffgkys( fptr, "EXTNAME", extname, NULL, &tstat ) ) continue; ffupch( extname ); if( strstr( extname, "GTI" ) ) break; } if( gParse.status ) { if( gParse.status==END_OF_FILE ) yyerror("GTI extension not found in this file"); return(-1); } } /* Locate START/STOP Columns */ ffgcno( fptr, CASEINSEN, start, &startCol, &gParse.status ); ffgcno( fptr, CASEINSEN, stop, &stopCol, &gParse.status ); if( gParse.status ) return(-1); /* Look for TIMEZERO keywords in GTI extension */ tstat = 0; if( ffgkyd( fptr, "TIMEZERO", timeZeroI+1, NULL, &tstat ) ) { tstat = 0; if( ffgkyd( fptr, "TIMEZERI", timeZeroI+1, NULL, &tstat ) ) { timeZeroI[1] = timeZeroF[1] = 0.0; } else if( ffgkyd( fptr, "TIMEZERF", timeZeroF+1, NULL, &tstat ) ) { timeZeroF[1] = 0.0; } } else { timeZeroF[1] = 0.0; } n = Alloc_Node(); if( n >= 0 ) { this = gParse.Nodes + n; this->nSubNodes = 2; this->SubNodes[1] = Node1; this->operation = (int)gtifilt_fct; this->DoOp = Do_GTI; this->type = BOOLEAN; that1 = gParse.Nodes + Node1; this->value.nelem = that1->value.nelem; this->value.naxis = that1->value.naxis; for( i=0; i < that1->value.naxis; i++ ) this->value.naxes[i] = that1->value.naxes[i]; /* Init START/STOP node to be treated as a "constant" */ this->SubNodes[0] = Node0; that0 = gParse.Nodes + Node0; that0->operation = CONST_OP; that0->DoOp = NULL; that0->value.data.ptr= NULL; /* Read in START/STOP times */ if( ffgkyj( fptr, "NAXIS2", &nrows, NULL, &gParse.status ) ) return(-1); that0->value.nelem = nrows; if( nrows ) { that0->value.data.dblptr = (double*)malloc( 2*nrows*sizeof(double) ); if( !that0->value.data.dblptr ) { gParse.status = MEMORY_ALLOCATION; return(-1); } ffgcvd( fptr, startCol, 1L, 1L, nrows, 0.0, that0->value.data.dblptr, &i, &gParse.status ); ffgcvd( fptr, stopCol, 1L, 1L, nrows, 0.0, that0->value.data.dblptr+nrows, &i, &gParse.status ); if( gParse.status ) { free( that0->value.data.dblptr ); return(-1); } /* Test for fully time-ordered GTI... both START && STOP */ that0->type = 1; /* Assume yes */ i = nrows; while( --i ) if( that0->value.data.dblptr[i-1] >= that0->value.data.dblptr[i] || that0->value.data.dblptr[i-1+nrows] >= that0->value.data.dblptr[i+nrows] ) { that0->type = 0; break; } /* Handle TIMEZERO offset, if any */ dt = (timeZeroI[1] - timeZeroI[0]) + (timeZeroF[1] - timeZeroF[0]); timeSpan = that0->value.data.dblptr[nrows+nrows-1] - that0->value.data.dblptr[0]; if( fabs( dt / timeSpan ) > 1e-12 ) { for( i=0; i<(nrows+nrows); i++ ) that0->value.data.dblptr[i] += dt; } } if( OPER(Node1)==CONST_OP ) this->DoOp( this ); } if( samefile ) ffmahd( fptr, evthdu, &hdutype, &gParse.status ); else ffclos( fptr, &gParse.status ); return( n ); } static int New_REG( char *fname, int NodeX, int NodeY, char *colNames ) { Node *this, *that0; int type, n, Node0; int Xcol, Ycol, tstat; WCSdata wcs; SAORegion *Rgn; char *cX, *cY; YYSTYPE colVal; if( NodeX==-99 ) { type = yyGetVariable( "X", &colVal ); if( type==COLUMN ) { NodeX = New_Column( (int)colVal.lng ); } else { yyerror("Could not build X column for REGFILTER"); return(-1); } } if( NodeY==-99 ) { type = yyGetVariable( "Y", &colVal ); if( type==COLUMN ) { NodeY = New_Column( (int)colVal.lng ); } else { yyerror("Could not build Y column for REGFILTER"); return(-1); } } NodeX = New_Unary( DOUBLE, 0, NodeX ); NodeY = New_Unary( DOUBLE, 0, NodeY ); Node0 = Alloc_Node(); /* This will hold the Region Data */ if( NodeX<0 || NodeY<0 || Node0<0 ) return(-1); if( ! (Test_Dims( NodeX, NodeY ) ) ) { yyerror("Dimensions of REGFILTER arguments are not compatible"); return (-1); } n = Alloc_Node(); if( n >= 0 ) { this = gParse.Nodes + n; this->nSubNodes = 3; this->SubNodes[0] = Node0; this->SubNodes[1] = NodeX; this->SubNodes[2] = NodeY; this->operation = (int)regfilt_fct; this->DoOp = Do_REG; this->type = BOOLEAN; this->value.nelem = 1; this->value.naxis = 1; this->value.naxes[0] = 1; Copy_Dims(n, NodeX); if( SIZE(NodeX)operation = CONST_OP; that0->DoOp = NULL; /* Identify what columns to use for WCS information */ Xcol = Ycol = 0; if( *colNames ) { /* Use the column names in this string for WCS info */ while( *colNames==' ' ) colNames++; cX = cY = colNames; while( *cY && *cY!=' ' && *cY!=',' ) cY++; if( *cY ) *(cY++) = '\0'; while( *cY==' ' ) cY++; if( !*cY ) { yyerror("Could not extract valid pair of column names from REGFILTER"); Free_Last_Node(); return( -1 ); } fits_get_colnum( gParse.def_fptr, CASEINSEN, cX, &Xcol, &gParse.status ); fits_get_colnum( gParse.def_fptr, CASEINSEN, cY, &Ycol, &gParse.status ); if( gParse.status ) { yyerror("Could not locate columns indicated for WCS info"); Free_Last_Node(); return( -1 ); } } else { /* Try to find columns used in X/Y expressions */ Xcol = Locate_Col( gParse.Nodes + NodeX ); Ycol = Locate_Col( gParse.Nodes + NodeY ); if( Xcol<0 || Ycol<0 ) { yyerror("Found multiple X/Y column references in REGFILTER"); Free_Last_Node(); return( -1 ); } } /* Now, get the WCS info, if it exists, from the indicated columns */ wcs.exists = 0; if( Xcol>0 && Ycol>0 ) { tstat = 0; ffgtcs( gParse.def_fptr, Xcol, Ycol, &wcs.xrefval, &wcs.yrefval, &wcs.xrefpix, &wcs.yrefpix, &wcs.xinc, &wcs.yinc, &wcs.rot, wcs.type, &tstat ); if( tstat==NO_WCS_KEY ) { wcs.exists = 0; } else if( tstat ) { gParse.status = tstat; Free_Last_Node(); return( -1 ); } else { wcs.exists = 1; } } /* Read in Region file */ fits_read_rgnfile( fname, &wcs, &Rgn, &gParse.status ); if( gParse.status ) { Free_Last_Node(); return( -1 ); } that0->value.data.ptr = Rgn; if( OPER(NodeX)==CONST_OP && OPER(NodeY)==CONST_OP ) this->DoOp( this ); } return( n ); } static int New_Vector( int subNode ) { Node *this, *that; int n; n = Alloc_Node(); if( n >= 0 ) { this = gParse.Nodes + n; that = gParse.Nodes + subNode; this->type = that->type; this->nSubNodes = 1; this->SubNodes[0] = subNode; this->operation = '{'; this->DoOp = Do_Vector; } return( n ); } static int Close_Vec( int vecNode ) { Node *this; int n, nelem=0; this = gParse.Nodes + vecNode; for( n=0; n < this->nSubNodes; n++ ) { if( TYPE( this->SubNodes[n] ) != this->type ) { this->SubNodes[n] = New_Unary( this->type, 0, this->SubNodes[n] ); if( this->SubNodes[n]<0 ) return(-1); } nelem += SIZE(this->SubNodes[n]); } this->value.naxis = 1; this->value.nelem = nelem; this->value.naxes[0] = nelem; return( vecNode ); } static int Locate_Col( Node *this ) /* Locate the TABLE column number of any columns in "this" calculation. */ /* Return ZERO if none found, or negative if more than 1 found. */ { Node *that; int i, col=0, newCol, nfound=0; if( this->nSubNodes==0 && this->operation<=0 && this->operation!=CONST_OP ) return gParse.colData[ - this->operation].colnum; for( i=0; inSubNodes; i++ ) { that = gParse.Nodes + this->SubNodes[i]; if( that->operation>0 ) { newCol = Locate_Col( that ); if( newCol<=0 ) { nfound += -newCol; } else { if( !nfound ) { col = newCol; nfound++; } else if( col != newCol ) { nfound++; } } } else if( that->operation!=CONST_OP ) { /* Found a Column */ newCol = gParse.colData[- that->operation].colnum; if( !nfound ) { col = newCol; nfound++; } else if( col != newCol ) { nfound++; } } } if( nfound!=1 ) return( - nfound ); else return( col ); } static int Test_Dims( int Node1, int Node2 ) { Node *that1, *that2; int valid, i; if( Node1<0 || Node2<0 ) return(0); that1 = gParse.Nodes + Node1; that2 = gParse.Nodes + Node2; if( that1->value.nelem==1 || that2->value.nelem==1 ) valid = 1; else if( that1->type==that2->type && that1->value.nelem==that2->value.nelem && that1->value.naxis==that2->value.naxis ) { valid = 1; for( i=0; ivalue.naxis; i++ ) { if( that1->value.naxes[i]!=that2->value.naxes[i] ) valid = 0; } } else valid = 0; return( valid ); } static void Copy_Dims( int Node1, int Node2 ) { Node *that1, *that2; int i; if( Node1<0 || Node2<0 ) return; that1 = gParse.Nodes + Node1; that2 = gParse.Nodes + Node2; that1->value.nelem = that2->value.nelem; that1->value.naxis = that2->value.naxis; for( i=0; ivalue.naxis; i++ ) that1->value.naxes[i] = that2->value.naxes[i]; } /********************************************************************/ /* Routines for actually evaluating the expression start here */ /********************************************************************/ void Evaluate_Parser( long firstRow, long nRows ) /***********************************************************************/ /* Reset the parser for processing another batch of data... */ /* firstRow: Row number of the first element to evaluate */ /* nRows: Number of rows to be processed */ /* Initialize each COLUMN node so that its UNDEF and DATA pointers */ /* point to the appropriate column arrays. */ /* Finally, call Evaluate_Node for final node. */ /***********************************************************************/ { int i, column; long offset, rowOffset; gParse.firstRow = firstRow; gParse.nRows = nRows; /* Reset Column Nodes' pointers to point to right data and UNDEF arrays */ rowOffset = firstRow - gParse.firstDataRow; for( i=0; i 0 || OPER(i) == CONST_OP ) continue; column = -OPER(i); offset = gParse.varData[column].nelem * rowOffset; gParse.Nodes[i].value.undef = gParse.varData[column].undef + offset; switch( gParse.Nodes[i].type ) { case BITSTR: gParse.Nodes[i].value.data.strptr = (char**)gParse.varData[column].data + rowOffset; gParse.Nodes[i].value.undef = NULL; break; case STRING: gParse.Nodes[i].value.data.strptr = (char**)gParse.varData[column].data + rowOffset; gParse.Nodes[i].value.undef = gParse.varData[column].undef + rowOffset; break; case BOOLEAN: gParse.Nodes[i].value.data.logptr = (char*)gParse.varData[column].data + offset; break; case LONG: gParse.Nodes[i].value.data.lngptr = (long*)gParse.varData[column].data + offset; break; case DOUBLE: gParse.Nodes[i].value.data.dblptr = (double*)gParse.varData[column].data + offset; break; } } Evaluate_Node( gParse.resultNode ); } static void Evaluate_Node( int thisNode ) /**********************************************************************/ /* Recursively evaluate thisNode's subNodes, then call one of the */ /* Do_ functions pointed to by thisNode's DoOp element. */ /**********************************************************************/ { Node *this; int i; if( gParse.status ) return; this = gParse.Nodes + thisNode; if( this->operation>0 ) { /* <=0 indicate constants and columns */ i = this->nSubNodes; while( i-- ) { Evaluate_Node( this->SubNodes[i] ); if( gParse.status ) return; } this->DoOp( this ); } } static void Allocate_Ptrs( Node *this ) { long elem, row, size; if( this->type==BITSTR || this->type==STRING ) { this->value.data.strptr = (char**)malloc( gParse.nRows * sizeof(char*) ); if( this->value.data.strptr ) { this->value.data.strptr[0] = (char*)malloc( gParse.nRows * (this->value.nelem+2) * sizeof(char) ); if( this->value.data.strptr[0] ) { row = 0; while( (++row)value.data.strptr[row] = this->value.data.strptr[row-1] + this->value.nelem+1; } if( this->type==STRING ) { this->value.undef = this->value.data.strptr[row-1] + this->value.nelem+1; } else { this->value.undef = NULL; /* BITSTRs don't use undef array */ } } else { gParse.status = MEMORY_ALLOCATION; free( this->value.data.strptr ); } } else { gParse.status = MEMORY_ALLOCATION; } } else { elem = this->value.nelem * gParse.nRows; switch( this->type ) { case DOUBLE: size = sizeof( double ); break; case LONG: size = sizeof( long ); break; case BOOLEAN: size = sizeof( char ); break; default: size = 1; break; } this->value.data.ptr = calloc(size+1, elem); if( this->value.data.ptr==NULL ) { gParse.status = MEMORY_ALLOCATION; } else { this->value.undef = (char *)this->value.data.ptr + elem*size; } } } static void Do_Unary( Node *this ) { Node *that; long elem; that = gParse.Nodes + this->SubNodes[0]; if( that->operation==CONST_OP ) { /* Operating on a constant! */ switch( this->operation ) { case DOUBLE: case FLTCAST: if( that->type==LONG ) this->value.data.dbl = (double)that->value.data.lng; else if( that->type==BOOLEAN ) this->value.data.dbl = ( that->value.data.log ? 1.0 : 0.0 ); break; case LONG: case INTCAST: if( that->type==DOUBLE ) this->value.data.lng = (long)that->value.data.dbl; else if( that->type==BOOLEAN ) this->value.data.lng = ( that->value.data.log ? 1L : 0L ); break; case BOOLEAN: if( that->type==DOUBLE ) this->value.data.log = ( that->value.data.dbl != 0.0 ); else if( that->type==LONG ) this->value.data.log = ( that->value.data.lng != 0L ); break; case UMINUS: if( that->type==DOUBLE ) this->value.data.dbl = - that->value.data.dbl; else if( that->type==LONG ) this->value.data.lng = - that->value.data.lng; break; case NOT: if( that->type==BOOLEAN ) this->value.data.log = ( ! that->value.data.log ); else if( that->type==BITSTR ) bitnot( this->value.data.str, that->value.data.str ); break; } this->operation = CONST_OP; } else { Allocate_Ptrs( this ); if( !gParse.status ) { if( this->type!=BITSTR ) { elem = gParse.nRows; if( this->type!=STRING ) elem *= this->value.nelem; while( elem-- ) this->value.undef[elem] = that->value.undef[elem]; } elem = gParse.nRows * this->value.nelem; switch( this->operation ) { case BOOLEAN: if( that->type==DOUBLE ) while( elem-- ) this->value.data.logptr[elem] = ( that->value.data.dblptr[elem] != 0.0 ); else if( that->type==LONG ) while( elem-- ) this->value.data.logptr[elem] = ( that->value.data.lngptr[elem] != 0L ); break; case DOUBLE: case FLTCAST: if( that->type==LONG ) while( elem-- ) this->value.data.dblptr[elem] = (double)that->value.data.lngptr[elem]; else if( that->type==BOOLEAN ) while( elem-- ) this->value.data.dblptr[elem] = ( that->value.data.logptr[elem] ? 1.0 : 0.0 ); break; case LONG: case INTCAST: if( that->type==DOUBLE ) while( elem-- ) this->value.data.lngptr[elem] = (long)that->value.data.dblptr[elem]; else if( that->type==BOOLEAN ) while( elem-- ) this->value.data.lngptr[elem] = ( that->value.data.logptr[elem] ? 1L : 0L ); break; case UMINUS: if( that->type==DOUBLE ) { while( elem-- ) this->value.data.dblptr[elem] = - that->value.data.dblptr[elem]; } else if( that->type==LONG ) { while( elem-- ) this->value.data.lngptr[elem] = - that->value.data.lngptr[elem]; } break; case NOT: if( that->type==BOOLEAN ) { while( elem-- ) this->value.data.logptr[elem] = ( ! that->value.data.logptr[elem] ); } else if( that->type==BITSTR ) { elem = gParse.nRows; while( elem-- ) bitnot( this->value.data.strptr[elem], that->value.data.strptr[elem] ); } break; } } } if( that->operation>0 ) { free( that->value.data.ptr ); } } static void Do_Offset( Node *this ) { Node *col; long fRow, nRowOverlap, nRowReload, rowOffset; long nelem, elem, offset, nRealElem; int status; col = gParse.Nodes + this->SubNodes[0]; rowOffset = gParse.Nodes[ this->SubNodes[1] ].value.data.lng; Allocate_Ptrs( this ); fRow = gParse.firstRow + rowOffset; if( this->type==STRING || this->type==BITSTR ) nRealElem = 1; else nRealElem = this->value.nelem; nelem = nRealElem; if( fRow < gParse.firstDataRow ) { /* Must fill in data at start of array */ nRowReload = gParse.firstDataRow - fRow; if( nRowReload > gParse.nRows ) nRowReload = gParse.nRows; nRowOverlap = gParse.nRows - nRowReload; offset = 0; /* NULLify any values falling out of bounds */ while( fRow<1 && nRowReload>0 ) { if( this->type == BITSTR ) { nelem = this->value.nelem; this->value.data.strptr[offset][ nelem ] = '\0'; while( nelem-- ) this->value.data.strptr[offset][nelem] = '0'; offset++; } else { while( nelem-- ) this->value.undef[offset++] = 1; } nelem = nRealElem; fRow++; nRowReload--; } } else if( fRow + gParse.nRows > gParse.firstDataRow + gParse.nDataRows ) { /* Must fill in data at end of array */ nRowReload = (fRow+gParse.nRows) - (gParse.firstDataRow+gParse.nDataRows); if( nRowReload>gParse.nRows ) { nRowReload = gParse.nRows; } else { fRow = gParse.firstDataRow + gParse.nDataRows; } nRowOverlap = gParse.nRows - nRowReload; offset = nRowOverlap * nelem; /* NULLify any values falling out of bounds */ elem = gParse.nRows * nelem; while( fRow+nRowReload>gParse.totalRows && nRowReload>0 ) { if( this->type == BITSTR ) { nelem = this->value.nelem; elem--; this->value.data.strptr[elem][ nelem ] = '\0'; while( nelem-- ) this->value.data.strptr[elem][nelem] = '0'; } else { while( nelem-- ) this->value.undef[--elem] = 1; } nelem = nRealElem; nRowReload--; } } else { nRowReload = 0; nRowOverlap = gParse.nRows; offset = 0; } if( nRowReload>0 ) { switch( this->type ) { case BITSTR: case STRING: status = (*gParse.loadData)( -col->operation, fRow, nRowReload, this->value.data.strptr+offset, this->value.undef+offset ); break; case BOOLEAN: status = (*gParse.loadData)( -col->operation, fRow, nRowReload, this->value.data.logptr+offset, this->value.undef+offset ); break; case LONG: status = (*gParse.loadData)( -col->operation, fRow, nRowReload, this->value.data.lngptr+offset, this->value.undef+offset ); break; case DOUBLE: status = (*gParse.loadData)( -col->operation, fRow, nRowReload, this->value.data.dblptr+offset, this->value.undef+offset ); break; } } /* Now copy over the overlapping region, if any */ if( nRowOverlap <= 0 ) return; if( rowOffset>0 ) elem = nRowOverlap * nelem; else elem = gParse.nRows * nelem; offset = nelem * rowOffset; while( nRowOverlap-- && !gParse.status ) { while( nelem-- && !gParse.status ) { elem--; if( this->type != BITSTR ) this->value.undef[elem] = col->value.undef[elem+offset]; switch( this->type ) { case BITSTR: strcpy( this->value.data.strptr[elem ], col->value.data.strptr[elem+offset] ); break; case STRING: strcpy( this->value.data.strptr[elem ], col->value.data.strptr[elem+offset] ); break; case BOOLEAN: this->value.data.logptr[elem] = col->value.data.logptr[elem+offset]; break; case LONG: this->value.data.lngptr[elem] = col->value.data.lngptr[elem+offset]; break; case DOUBLE: this->value.data.dblptr[elem] = col->value.data.dblptr[elem+offset]; break; } } nelem = nRealElem; } } static void Do_BinOp_bit( Node *this ) { Node *that1, *that2; char *sptr1=NULL, *sptr2=NULL; int const1, const2; long rows; that1 = gParse.Nodes + this->SubNodes[0]; that2 = gParse.Nodes + this->SubNodes[1]; const1 = ( that1->operation==CONST_OP ); const2 = ( that2->operation==CONST_OP ); sptr1 = ( const1 ? that1->value.data.str : NULL ); sptr2 = ( const2 ? that2->value.data.str : NULL ); if( const1 && const2 ) { switch( this->operation ) { case NE: this->value.data.log = !bitcmp( sptr1, sptr2 ); break; case EQ: this->value.data.log = bitcmp( sptr1, sptr2 ); break; case GT: case LT: case LTE: case GTE: this->value.data.log = bitlgte( sptr1, this->operation, sptr2 ); break; case '|': bitor( this->value.data.str, sptr1, sptr2 ); break; case '&': bitand( this->value.data.str, sptr1, sptr2 ); break; case '+': strcpy( this->value.data.str, sptr1 ); strcat( this->value.data.str, sptr2 ); break; case ACCUM: this->value.data.lng = 0; while( *sptr1 ) { if ( *sptr1 == '1' ) this->value.data.lng ++; sptr1 ++; } break; } this->operation = CONST_OP; } else { Allocate_Ptrs( this ); if( !gParse.status ) { rows = gParse.nRows; switch( this->operation ) { /* BITSTR comparisons */ case NE: case EQ: case GT: case LT: case LTE: case GTE: while( rows-- ) { if( !const1 ) sptr1 = that1->value.data.strptr[rows]; if( !const2 ) sptr2 = that2->value.data.strptr[rows]; switch( this->operation ) { case NE: this->value.data.logptr[rows] = !bitcmp( sptr1, sptr2 ); break; case EQ: this->value.data.logptr[rows] = bitcmp( sptr1, sptr2 ); break; case GT: case LT: case LTE: case GTE: this->value.data.logptr[rows] = bitlgte( sptr1, this->operation, sptr2 ); break; } this->value.undef[rows] = 0; } break; /* BITSTR AND/ORs ... no UNDEFS in or out */ case '|': case '&': case '+': while( rows-- ) { if( !const1 ) sptr1 = that1->value.data.strptr[rows]; if( !const2 ) sptr2 = that2->value.data.strptr[rows]; if( this->operation=='|' ) bitor( this->value.data.strptr[rows], sptr1, sptr2 ); else if( this->operation=='&' ) bitand( this->value.data.strptr[rows], sptr1, sptr2 ); else { strcpy( this->value.data.strptr[rows], sptr1 ); strcat( this->value.data.strptr[rows], sptr2 ); } } break; /* Accumulate 1 bits */ case ACCUM: { long i, previous, curr; previous = that2->value.data.lng; /* Cumulative sum of this chunk */ for (i=0; ivalue.data.strptr[i]; for (curr = 0; *sptr1; sptr1 ++) { if ( *sptr1 == '1' ) curr ++; } previous += curr; this->value.data.lngptr[i] = previous; this->value.undef[i] = 0; } /* Store final cumulant for next pass */ that2->value.data.lng = previous; } } } } if( that1->operation>0 ) { free( that1->value.data.strptr[0] ); free( that1->value.data.strptr ); } if( that2->operation>0 ) { free( that2->value.data.strptr[0] ); free( that2->value.data.strptr ); } } static void Do_BinOp_str( Node *this ) { Node *that1, *that2; char *sptr1, *sptr2, null1=0, null2=0; int const1, const2, val; long rows; that1 = gParse.Nodes + this->SubNodes[0]; that2 = gParse.Nodes + this->SubNodes[1]; const1 = ( that1->operation==CONST_OP ); const2 = ( that2->operation==CONST_OP ); sptr1 = ( const1 ? that1->value.data.str : NULL ); sptr2 = ( const2 ? that2->value.data.str : NULL ); if( const1 && const2 ) { /* Result is a constant */ switch( this->operation ) { /* Compare Strings */ case NE: case EQ: val = ( FSTRCMP( sptr1, sptr2 ) == 0 ); this->value.data.log = ( this->operation==EQ ? val : !val ); break; case GT: this->value.data.log = ( FSTRCMP( sptr1, sptr2 ) > 0 ); break; case LT: this->value.data.log = ( FSTRCMP( sptr1, sptr2 ) < 0 ); break; case GTE: this->value.data.log = ( FSTRCMP( sptr1, sptr2 ) >= 0 ); break; case LTE: this->value.data.log = ( FSTRCMP( sptr1, sptr2 ) <= 0 ); break; /* Concat Strings */ case '+': strcpy( this->value.data.str, sptr1 ); strcat( this->value.data.str, sptr2 ); break; } this->operation = CONST_OP; } else { /* Not a constant */ Allocate_Ptrs( this ); if( !gParse.status ) { rows = gParse.nRows; switch( this->operation ) { /* Compare Strings */ case NE: case EQ: while( rows-- ) { if( !const1 ) null1 = that1->value.undef[rows]; if( !const2 ) null2 = that2->value.undef[rows]; this->value.undef[rows] = (null1 || null2); if( ! this->value.undef[rows] ) { if( !const1 ) sptr1 = that1->value.data.strptr[rows]; if( !const2 ) sptr2 = that2->value.data.strptr[rows]; val = ( FSTRCMP( sptr1, sptr2 ) == 0 ); this->value.data.logptr[rows] = ( this->operation==EQ ? val : !val ); } } break; case GT: case LT: while( rows-- ) { if( !const1 ) null1 = that1->value.undef[rows]; if( !const2 ) null2 = that2->value.undef[rows]; this->value.undef[rows] = (null1 || null2); if( ! this->value.undef[rows] ) { if( !const1 ) sptr1 = that1->value.data.strptr[rows]; if( !const2 ) sptr2 = that2->value.data.strptr[rows]; val = ( FSTRCMP( sptr1, sptr2 ) ); this->value.data.logptr[rows] = ( this->operation==GT ? val>0 : val<0 ); } } break; case GTE: case LTE: while( rows-- ) { if( !const1 ) null1 = that1->value.undef[rows]; if( !const2 ) null2 = that2->value.undef[rows]; this->value.undef[rows] = (null1 || null2); if( ! this->value.undef[rows] ) { if( !const1 ) sptr1 = that1->value.data.strptr[rows]; if( !const2 ) sptr2 = that2->value.data.strptr[rows]; val = ( FSTRCMP( sptr1, sptr2 ) ); this->value.data.logptr[rows] = ( this->operation==GTE ? val>=0 : val<=0 ); } } break; /* Concat Strings */ case '+': while( rows-- ) { if( !const1 ) null1 = that1->value.undef[rows]; if( !const2 ) null2 = that2->value.undef[rows]; this->value.undef[rows] = (null1 || null2); if( ! this->value.undef[rows] ) { if( !const1 ) sptr1 = that1->value.data.strptr[rows]; if( !const2 ) sptr2 = that2->value.data.strptr[rows]; strcpy( this->value.data.strptr[rows], sptr1 ); strcat( this->value.data.strptr[rows], sptr2 ); } } break; } } } if( that1->operation>0 ) { free( that1->value.data.strptr[0] ); free( that1->value.data.strptr ); } if( that2->operation>0 ) { free( that2->value.data.strptr[0] ); free( that2->value.data.strptr ); } } static void Do_BinOp_log( Node *this ) { Node *that1, *that2; int vector1, vector2; char val1=0, val2=0, null1=0, null2=0; long rows, nelem, elem; that1 = gParse.Nodes + this->SubNodes[0]; that2 = gParse.Nodes + this->SubNodes[1]; vector1 = ( that1->operation!=CONST_OP ); if( vector1 ) vector1 = that1->value.nelem; else { val1 = that1->value.data.log; } vector2 = ( that2->operation!=CONST_OP ); if( vector2 ) vector2 = that2->value.nelem; else { val2 = that2->value.data.log; } if( !vector1 && !vector2 ) { /* Result is a constant */ switch( this->operation ) { case OR: this->value.data.log = (val1 || val2); break; case AND: this->value.data.log = (val1 && val2); break; case EQ: this->value.data.log = ( (val1 && val2) || (!val1 && !val2) ); break; case NE: this->value.data.log = ( (val1 && !val2) || (!val1 && val2) ); break; case ACCUM: this->value.data.lng = val1; break; } this->operation=CONST_OP; } else if (this->operation == ACCUM) { long i, previous, curr; rows = gParse.nRows; nelem = this->value.nelem; elem = this->value.nelem * rows; Allocate_Ptrs( this ); if( !gParse.status ) { previous = that2->value.data.lng; /* Cumulative sum of this chunk */ for (i=0; ivalue.undef[i]) { curr = that1->value.data.logptr[i]; previous += curr; } this->value.data.lngptr[i] = previous; this->value.undef[i] = 0; } /* Store final cumulant for next pass */ that2->value.data.lng = previous; } } else { rows = gParse.nRows; nelem = this->value.nelem; elem = this->value.nelem * rows; Allocate_Ptrs( this ); if( !gParse.status ) { if (this->operation == ACCUM) { long i, previous, curr; previous = that2->value.data.lng; /* Cumulative sum of this chunk */ for (i=0; ivalue.undef[i]) { curr = that1->value.data.logptr[i]; previous += curr; } this->value.data.lngptr[i] = previous; this->value.undef[i] = 0; } /* Store final cumulant for next pass */ that2->value.data.lng = previous; } while( rows-- ) { while( nelem-- ) { elem--; if( vector1>1 ) { val1 = that1->value.data.logptr[elem]; null1 = that1->value.undef[elem]; } else if( vector1 ) { val1 = that1->value.data.logptr[rows]; null1 = that1->value.undef[rows]; } if( vector2>1 ) { val2 = that2->value.data.logptr[elem]; null2 = that2->value.undef[elem]; } else if( vector2 ) { val2 = that2->value.data.logptr[rows]; null2 = that2->value.undef[rows]; } this->value.undef[elem] = (null1 || null2); switch( this->operation ) { case OR: /* This is more complicated than others to suppress UNDEFs */ /* in those cases where the other argument is DEF && TRUE */ if( !null1 && !null2 ) { this->value.data.logptr[elem] = (val1 || val2); } else if( (null1 && !null2 && val2) || ( !null1 && null2 && val1 ) ) { this->value.data.logptr[elem] = 1; this->value.undef[elem] = 0; } break; case AND: /* This is more complicated than others to suppress UNDEFs */ /* in those cases where the other argument is DEF && FALSE */ if( !null1 && !null2 ) { this->value.data.logptr[elem] = (val1 && val2); } else if( (null1 && !null2 && !val2) || ( !null1 && null2 && !val1 ) ) { this->value.data.logptr[elem] = 0; this->value.undef[elem] = 0; } break; case EQ: this->value.data.logptr[elem] = ( (val1 && val2) || (!val1 && !val2) ); break; case NE: this->value.data.logptr[elem] = ( (val1 && !val2) || (!val1 && val2) ); break; } } nelem = this->value.nelem; } } } if( that1->operation>0 ) { free( that1->value.data.ptr ); } if( that2->operation>0 ) { free( that2->value.data.ptr ); } } static void Do_BinOp_lng( Node *this ) { Node *that1, *that2; int vector1, vector2; long val1=0, val2=0; char null1=0, null2=0; long rows, nelem, elem; that1 = gParse.Nodes + this->SubNodes[0]; that2 = gParse.Nodes + this->SubNodes[1]; vector1 = ( that1->operation!=CONST_OP ); if( vector1 ) vector1 = that1->value.nelem; else { val1 = that1->value.data.lng; } vector2 = ( that2->operation!=CONST_OP ); if( vector2 ) vector2 = that2->value.nelem; else { val2 = that2->value.data.lng; } if( !vector1 && !vector2 ) { /* Result is a constant */ switch( this->operation ) { case '~': /* Treat as == for LONGS */ case EQ: this->value.data.log = (val1 == val2); break; case NE: this->value.data.log = (val1 != val2); break; case GT: this->value.data.log = (val1 > val2); break; case LT: this->value.data.log = (val1 < val2); break; case LTE: this->value.data.log = (val1 <= val2); break; case GTE: this->value.data.log = (val1 >= val2); break; case '+': this->value.data.lng = (val1 + val2); break; case '-': this->value.data.lng = (val1 - val2); break; case '*': this->value.data.lng = (val1 * val2); break; case '%': if( val2 ) this->value.data.lng = (val1 % val2); else yyerror("Divide by Zero"); break; case '/': if( val2 ) this->value.data.lng = (val1 / val2); else yyerror("Divide by Zero"); break; case POWER: this->value.data.lng = (long)pow((double)val1,(double)val2); break; case ACCUM: this->value.data.lng = val1; break; case DIFF: this->value.data.lng = 0; break; } this->operation=CONST_OP; } else if ((this->operation == ACCUM) || (this->operation == DIFF)) { long i, previous, curr; long undef; rows = gParse.nRows; nelem = this->value.nelem; elem = this->value.nelem * rows; Allocate_Ptrs( this ); if( !gParse.status ) { previous = that2->value.data.lng; undef = (long) that2->value.undef; if (this->operation == ACCUM) { /* Cumulative sum of this chunk */ for (i=0; ivalue.undef[i]) { curr = that1->value.data.lngptr[i]; previous += curr; } this->value.data.lngptr[i] = previous; this->value.undef[i] = 0; } } else { /* Sequential difference for this chunk */ for (i=0; ivalue.data.lngptr[i]; if (that1->value.undef[i] || undef) { /* Either this, or previous, value was undefined */ this->value.data.lngptr[i] = 0; this->value.undef[i] = 1; } else { /* Both defined, we are okay! */ this->value.data.lngptr[i] = curr - previous; this->value.undef[i] = 0; } previous = curr; undef = that1->value.undef[i]; } } /* Store final cumulant for next pass */ that2->value.data.lng = previous; that2->value.undef = (char *) undef; /* XXX evil, but no harm here */ } } else { rows = gParse.nRows; nelem = this->value.nelem; elem = this->value.nelem * rows; Allocate_Ptrs( this ); while( rows-- && !gParse.status ) { while( nelem-- && !gParse.status ) { elem--; if( vector1>1 ) { val1 = that1->value.data.lngptr[elem]; null1 = that1->value.undef[elem]; } else if( vector1 ) { val1 = that1->value.data.lngptr[rows]; null1 = that1->value.undef[rows]; } if( vector2>1 ) { val2 = that2->value.data.lngptr[elem]; null2 = that2->value.undef[elem]; } else if( vector2 ) { val2 = that2->value.data.lngptr[rows]; null2 = that2->value.undef[rows]; } this->value.undef[elem] = (null1 || null2); switch( this->operation ) { case '~': /* Treat as == for LONGS */ case EQ: this->value.data.logptr[elem] = (val1 == val2); break; case NE: this->value.data.logptr[elem] = (val1 != val2); break; case GT: this->value.data.logptr[elem] = (val1 > val2); break; case LT: this->value.data.logptr[elem] = (val1 < val2); break; case LTE: this->value.data.logptr[elem] = (val1 <= val2); break; case GTE: this->value.data.logptr[elem] = (val1 >= val2); break; case '+': this->value.data.lngptr[elem] = (val1 + val2); break; case '-': this->value.data.lngptr[elem] = (val1 - val2); break; case '*': this->value.data.lngptr[elem] = (val1 * val2); break; case '%': if( val2 ) this->value.data.lngptr[elem] = (val1 % val2); else { this->value.data.lngptr[elem] = 0; this->value.undef[elem] = 1; } break; case '/': if( val2 ) this->value.data.lngptr[elem] = (val1 / val2); else { this->value.data.lngptr[elem] = 0; this->value.undef[elem] = 1; } break; case POWER: this->value.data.lngptr[elem] = (long)pow((double)val1,(double)val2); break; } } nelem = this->value.nelem; } } if( that1->operation>0 ) { free( that1->value.data.ptr ); } if( that2->operation>0 ) { free( that2->value.data.ptr ); } } static void Do_BinOp_dbl( Node *this ) { Node *that1, *that2; int vector1, vector2; double val1=0.0, val2=0.0; char null1=0, null2=0; long rows, nelem, elem; that1 = gParse.Nodes + this->SubNodes[0]; that2 = gParse.Nodes + this->SubNodes[1]; vector1 = ( that1->operation!=CONST_OP ); if( vector1 ) vector1 = that1->value.nelem; else { val1 = that1->value.data.dbl; } vector2 = ( that2->operation!=CONST_OP ); if( vector2 ) vector2 = that2->value.nelem; else { val2 = that2->value.data.dbl; } if( !vector1 && !vector2 ) { /* Result is a constant */ switch( this->operation ) { case '~': this->value.data.log = ( fabs(val1-val2) < APPROX ); break; case EQ: this->value.data.log = (val1 == val2); break; case NE: this->value.data.log = (val1 != val2); break; case GT: this->value.data.log = (val1 > val2); break; case LT: this->value.data.log = (val1 < val2); break; case LTE: this->value.data.log = (val1 <= val2); break; case GTE: this->value.data.log = (val1 >= val2); break; case '+': this->value.data.dbl = (val1 + val2); break; case '-': this->value.data.dbl = (val1 - val2); break; case '*': this->value.data.dbl = (val1 * val2); break; case '%': if( val2 ) this->value.data.dbl = val1 - val2*((int)(val1/val2)); else yyerror("Divide by Zero"); break; case '/': if( val2 ) this->value.data.dbl = (val1 / val2); else yyerror("Divide by Zero"); break; case POWER: this->value.data.dbl = (double)pow(val1,val2); break; case ACCUM: this->value.data.dbl = val1; break; case DIFF: this->value.data.dbl = 0; break; } this->operation=CONST_OP; } else if ((this->operation == ACCUM) || (this->operation == DIFF)) { long i; long undef; double previous, curr; rows = gParse.nRows; nelem = this->value.nelem; elem = this->value.nelem * rows; Allocate_Ptrs( this ); if( !gParse.status ) { previous = that2->value.data.dbl; undef = (long) that2->value.undef; if (this->operation == ACCUM) { /* Cumulative sum of this chunk */ for (i=0; ivalue.undef[i]) { curr = that1->value.data.dblptr[i]; previous += curr; } this->value.data.dblptr[i] = previous; this->value.undef[i] = 0; } } else { /* Sequential difference for this chunk */ for (i=0; ivalue.data.dblptr[i]; if (that1->value.undef[i] || undef) { /* Either this, or previous, value was undefined */ this->value.data.dblptr[i] = 0; this->value.undef[i] = 1; } else { /* Both defined, we are okay! */ this->value.data.dblptr[i] = curr - previous; this->value.undef[i] = 0; } previous = curr; undef = that1->value.undef[i]; } } /* Store final cumulant for next pass */ that2->value.data.dbl = previous; that2->value.undef = (char *) undef; /* XXX evil, but no harm here */ } } else { rows = gParse.nRows; nelem = this->value.nelem; elem = this->value.nelem * rows; Allocate_Ptrs( this ); while( rows-- && !gParse.status ) { while( nelem-- && !gParse.status ) { elem--; if( vector1>1 ) { val1 = that1->value.data.dblptr[elem]; null1 = that1->value.undef[elem]; } else if( vector1 ) { val1 = that1->value.data.dblptr[rows]; null1 = that1->value.undef[rows]; } if( vector2>1 ) { val2 = that2->value.data.dblptr[elem]; null2 = that2->value.undef[elem]; } else if( vector2 ) { val2 = that2->value.data.dblptr[rows]; null2 = that2->value.undef[rows]; } this->value.undef[elem] = (null1 || null2); switch( this->operation ) { case '~': this->value.data.logptr[elem] = ( fabs(val1-val2) < APPROX ); break; case EQ: this->value.data.logptr[elem] = (val1 == val2); break; case NE: this->value.data.logptr[elem] = (val1 != val2); break; case GT: this->value.data.logptr[elem] = (val1 > val2); break; case LT: this->value.data.logptr[elem] = (val1 < val2); break; case LTE: this->value.data.logptr[elem] = (val1 <= val2); break; case GTE: this->value.data.logptr[elem] = (val1 >= val2); break; case '+': this->value.data.dblptr[elem] = (val1 + val2); break; case '-': this->value.data.dblptr[elem] = (val1 - val2); break; case '*': this->value.data.dblptr[elem] = (val1 * val2); break; case '%': if( val2 ) this->value.data.dblptr[elem] = val1 - val2*((int)(val1/val2)); else { this->value.data.dblptr[elem] = 0.0; this->value.undef[elem] = 1; } break; case '/': if( val2 ) this->value.data.dblptr[elem] = (val1 / val2); else { this->value.data.dblptr[elem] = 0.0; this->value.undef[elem] = 1; } break; case POWER: this->value.data.dblptr[elem] = (double)pow(val1,val2); break; } } nelem = this->value.nelem; } } if( that1->operation>0 ) { free( that1->value.data.ptr ); } if( that2->operation>0 ) { free( that2->value.data.ptr ); } } /* * This Quickselect routine is based on the algorithm described in * "Numerical recipes in C", Second Edition, * Cambridge University Press, 1992, Section 8.5, ISBN 0-521-43108-5 * This code by Nicolas Devillard - 1998. Public domain. * http://ndevilla.free.fr/median/median/src/quickselect.c */ #define ELEM_SWAP(a,b) { register long t=(a);(a)=(b);(b)=t; } /* * qselect_median_lng - select the median value of a long array * * This routine selects the median value of the long integer array * arr[]. If there are an even number of elements, the "lower median" * is selected. * * The array arr[] is scrambled, so users must operate on a scratch * array if they wish the values to be preserved. * * long arr[] - array of values * int n - number of elements in arr * * RETURNS: the lower median value of arr[] * */ long qselect_median_lng(long arr[], int n) { int low, high ; int median; int middle, ll, hh; low = 0 ; high = n-1 ; median = (low + high) / 2; for (;;) { if (high <= low) { /* One element only */ return arr[median]; } if (high == low + 1) { /* Two elements only */ if (arr[low] > arr[high]) ELEM_SWAP(arr[low], arr[high]) ; return arr[median]; } /* Find median of low, middle and high items; swap into position low */ middle = (low + high) / 2; if (arr[middle] > arr[high]) ELEM_SWAP(arr[middle], arr[high]) ; if (arr[low] > arr[high]) ELEM_SWAP(arr[low], arr[high]) ; if (arr[middle] > arr[low]) ELEM_SWAP(arr[middle], arr[low]) ; /* Swap low item (now in position middle) into position (low+1) */ ELEM_SWAP(arr[middle], arr[low+1]) ; /* Nibble from each end towards middle, swapping items when stuck */ ll = low + 1; hh = high; for (;;) { do ll++; while (arr[low] > arr[ll]) ; do hh--; while (arr[hh] > arr[low]) ; if (hh < ll) break; ELEM_SWAP(arr[ll], arr[hh]) ; } /* Swap middle item (in position low) back into correct position */ ELEM_SWAP(arr[low], arr[hh]) ; /* Re-set active partition */ if (hh <= median) low = ll; if (hh >= median) high = hh - 1; } } #undef ELEM_SWAP #define ELEM_SWAP(a,b) { register double t=(a);(a)=(b);(b)=t; } /* * qselect_median_dbl - select the median value of a double array * * This routine selects the median value of the double array * arr[]. If there are an even number of elements, the "lower median" * is selected. * * The array arr[] is scrambled, so users must operate on a scratch * array if they wish the values to be preserved. * * double arr[] - array of values * int n - number of elements in arr * * RETURNS: the lower median value of arr[] * */ double qselect_median_dbl(double arr[], int n) { int low, high ; int median; int middle, ll, hh; low = 0 ; high = n-1 ; median = (low + high) / 2; for (;;) { if (high <= low) { /* One element only */ return arr[median] ; } if (high == low + 1) { /* Two elements only */ if (arr[low] > arr[high]) ELEM_SWAP(arr[low], arr[high]) ; return arr[median] ; } /* Find median of low, middle and high items; swap into position low */ middle = (low + high) / 2; if (arr[middle] > arr[high]) ELEM_SWAP(arr[middle], arr[high]) ; if (arr[low] > arr[high]) ELEM_SWAP(arr[low], arr[high]) ; if (arr[middle] > arr[low]) ELEM_SWAP(arr[middle], arr[low]) ; /* Swap low item (now in position middle) into position (low+1) */ ELEM_SWAP(arr[middle], arr[low+1]) ; /* Nibble from each end towards middle, swapping items when stuck */ ll = low + 1; hh = high; for (;;) { do ll++; while (arr[low] > arr[ll]) ; do hh--; while (arr[hh] > arr[low]) ; if (hh < ll) break; ELEM_SWAP(arr[ll], arr[hh]) ; } /* Swap middle item (in position low) back into correct position */ ELEM_SWAP(arr[low], arr[hh]) ; /* Re-set active partition */ if (hh <= median) low = ll; if (hh >= median) high = hh - 1; } } #undef ELEM_SWAP /* * angsep_calc - compute angular separation between celestial coordinates * * This routine computes the angular separation between to coordinates * on the celestial sphere (i.e. RA and Dec). Note that all units are * in DEGREES, unlike the other trig functions in the calculator. * * double ra1, dec1 - RA and Dec of the first position in degrees * double ra2, dec2 - RA and Dec of the second position in degrees * * RETURNS: (double) angular separation in degrees * */ double angsep_calc(double ra1, double dec1, double ra2, double dec2) { /* double cd; */ static double deg = 0; double a, sdec, sra; if (deg == 0) deg = ((double)4)*atan((double)1)/((double)180); /* deg = 1.0; **** UNCOMMENT IF YOU WANT RADIANS */ /* This (commented out) algorithm uses the Low of Cosines, which becomes unstable for angles less than 0.1 arcsec. cd = sin(dec1*deg)*sin(dec2*deg) + cos(dec1*deg)*cos(dec2*deg)*cos((ra1-ra2)*deg); if (cd < (-1)) cd = -1; if (cd > (+1)) cd = +1; return acos(cd)/deg; */ /* The algorithm is the law of Haversines. This algorithm is stable even when the points are close together. The normal Law of Cosines fails for angles around 0.1 arcsec. */ sra = sin( (ra2 - ra1)*deg / 2 ); sdec = sin( (dec2 - dec1)*deg / 2); a = sdec*sdec + cos(dec1*deg)*cos(dec2*deg)*sra*sra; /* Sanity checking to avoid a range error in the sqrt()'s below */ if (a < 0) { a = 0; } if (a > 1) { a = 1; } return 2.0*atan2(sqrt(a), sqrt(1.0 - a)) / deg; } static double ran1() { static double dval = 0.0; double rndVal; if (dval == 0.0) { if( rand()<32768 && rand()<32768 ) dval = 32768.0; else dval = 2147483648.0; } rndVal = (double)rand(); while( rndVal > dval ) dval *= 2.0; return rndVal/dval; } /* Gaussian deviate routine from Numerical Recipes */ static double gasdev() { static int iset = 0; static double gset; double fac, rsq, v1, v2; if (iset == 0) { do { v1 = 2.0*ran1()-1.0; v2 = 2.0*ran1()-1.0; rsq = v1*v1 + v2*v2; } while (rsq >= 1.0 || rsq == 0.0); fac = sqrt(-2.0*log(rsq)/rsq); gset = v1*fac; iset = 1; return v2*fac; } else { iset = 0; return gset; } } /* lgamma function - from Numerical Recipes */ float gammaln(float xx) /* Returns the value ln Gamma[(xx)] for xx > 0. */ { /* Internal arithmetic will be done in double precision, a nicety that you can omit if five-figure accuracy is good enough. */ double x,y,tmp,ser; static double cof[6]={76.18009172947146,-86.50532032941677, 24.01409824083091,-1.231739572450155, 0.1208650973866179e-2,-0.5395239384953e-5}; int j; y=x=xx; tmp=x+5.5; tmp -= (x+0.5)*log(tmp); ser=1.000000000190015; for (j=0;j<=5;j++) ser += cof[j]/++y; return (float) (-tmp+log(2.5066282746310005*ser/x)); } /* Poisson deviate - derived from Numerical Recipes */ static long poidev(double xm) { static double sq, alxm, g, oldm = -1.0; static double pi = 0; double em, t, y; if (pi == 0) pi = ((double)4)*atan((double)1); if (xm < 20.0) { if (xm != oldm) { oldm = xm; g = exp(-xm); } em = -1; t = 1.0; do { em += 1; t *= ran1(); } while (t > g); } else { if (xm != oldm) { oldm = xm; sq = sqrt(2.0*xm); alxm = log(xm); g = xm*alxm-gammaln( (float) (xm+1.0)); } do { do { y = tan(pi*ran1()); em = sq*y+xm; } while (em < 0.0); em = floor(em); t = 0.9*(1.0+y*y)*exp(em*alxm-gammaln( (float) (em+1.0) )-g); } while (ran1() > t); } /* Return integer version */ return (long int) floor(em+0.5); } static void Do_Func( Node *this ) { Node *theParams[MAXSUBS]; int vector[MAXSUBS], allConst; lval pVals[MAXSUBS]; char pNull[MAXSUBS]; long ival; double dval; int i, valInit; long row, elem, nelem; i = this->nSubNodes; allConst = 1; while( i-- ) { theParams[i] = gParse.Nodes + this->SubNodes[i]; vector[i] = ( theParams[i]->operation!=CONST_OP ); if( vector[i] ) { allConst = 0; vector[i] = theParams[i]->value.nelem; } else { if( theParams[i]->type==DOUBLE ) { pVals[i].data.dbl = theParams[i]->value.data.dbl; } else if( theParams[i]->type==LONG ) { pVals[i].data.lng = theParams[i]->value.data.lng; } else if( theParams[i]->type==BOOLEAN ) { pVals[i].data.log = theParams[i]->value.data.log; } else strcpy(pVals[i].data.str, theParams[i]->value.data.str); pNull[i] = 0; } } if( this->nSubNodes==0 ) allConst = 0; /* These do produce scalars */ /* Random numbers are *never* constant !! */ if( this->operation == poirnd_fct ) allConst = 0; if( this->operation == gasrnd_fct ) allConst = 0; if( this->operation == rnd_fct ) allConst = 0; if( allConst ) { switch( this->operation ) { /* Non-Trig single-argument functions */ case sum_fct: if( theParams[0]->type==BOOLEAN ) this->value.data.lng = ( pVals[0].data.log ? 1 : 0 ); else if( theParams[0]->type==LONG ) this->value.data.lng = pVals[0].data.lng; else if( theParams[0]->type==DOUBLE ) this->value.data.dbl = pVals[0].data.dbl; else if( theParams[0]->type==BITSTR ) strcpy(this->value.data.str, pVals[0].data.str); break; case average_fct: if( theParams[0]->type==LONG ) this->value.data.dbl = pVals[0].data.lng; else if( theParams[0]->type==DOUBLE ) this->value.data.dbl = pVals[0].data.dbl; break; case stddev_fct: this->value.data.dbl = 0; /* Standard deviation of a constant = 0 */ break; case median_fct: if( theParams[0]->type==BOOLEAN ) this->value.data.lng = ( pVals[0].data.log ? 1 : 0 ); else if( theParams[0]->type==LONG ) this->value.data.lng = pVals[0].data.lng; else this->value.data.dbl = pVals[0].data.dbl; break; case poirnd_fct: if( theParams[0]->type==DOUBLE ) this->value.data.lng = poidev(pVals[0].data.dbl); else this->value.data.lng = poidev(pVals[0].data.lng); break; case abs_fct: if( theParams[0]->type==DOUBLE ) { dval = pVals[0].data.dbl; this->value.data.dbl = (dval>0.0 ? dval : -dval); } else { ival = pVals[0].data.lng; this->value.data.lng = (ival> 0 ? ival : -ival); } break; /* Special Null-Handling Functions */ case nonnull_fct: this->value.data.lng = 1; /* Constants are always 1-element and defined */ break; case isnull_fct: /* Constants are always defined */ this->value.data.log = 0; break; case defnull_fct: if( this->type==BOOLEAN ) this->value.data.log = pVals[0].data.log; else if( this->type==LONG ) this->value.data.lng = pVals[0].data.lng; else if( this->type==DOUBLE ) this->value.data.dbl = pVals[0].data.dbl; else if( this->type==STRING ) strcpy(this->value.data.str,pVals[0].data.str); break; /* Math functions with 1 double argument */ case sin_fct: this->value.data.dbl = sin( pVals[0].data.dbl ); break; case cos_fct: this->value.data.dbl = cos( pVals[0].data.dbl ); break; case tan_fct: this->value.data.dbl = tan( pVals[0].data.dbl ); break; case asin_fct: dval = pVals[0].data.dbl; if( dval<-1.0 || dval>1.0 ) yyerror("Out of range argument to arcsin"); else this->value.data.dbl = asin( dval ); break; case acos_fct: dval = pVals[0].data.dbl; if( dval<-1.0 || dval>1.0 ) yyerror("Out of range argument to arccos"); else this->value.data.dbl = acos( dval ); break; case atan_fct: this->value.data.dbl = atan( pVals[0].data.dbl ); break; case sinh_fct: this->value.data.dbl = sinh( pVals[0].data.dbl ); break; case cosh_fct: this->value.data.dbl = cosh( pVals[0].data.dbl ); break; case tanh_fct: this->value.data.dbl = tanh( pVals[0].data.dbl ); break; case exp_fct: this->value.data.dbl = exp( pVals[0].data.dbl ); break; case log_fct: dval = pVals[0].data.dbl; if( dval<=0.0 ) yyerror("Out of range argument to log"); else this->value.data.dbl = log( dval ); break; case log10_fct: dval = pVals[0].data.dbl; if( dval<=0.0 ) yyerror("Out of range argument to log10"); else this->value.data.dbl = log10( dval ); break; case sqrt_fct: dval = pVals[0].data.dbl; if( dval<0.0 ) yyerror("Out of range argument to sqrt"); else this->value.data.dbl = sqrt( dval ); break; case ceil_fct: this->value.data.dbl = ceil( pVals[0].data.dbl ); break; case floor_fct: this->value.data.dbl = floor( pVals[0].data.dbl ); break; case round_fct: this->value.data.dbl = floor( pVals[0].data.dbl + 0.5 ); break; /* Two-argument Trig Functions */ case atan2_fct: this->value.data.dbl = atan2( pVals[0].data.dbl, pVals[1].data.dbl ); break; /* Four-argument ANGSEP function */ case angsep_fct: this->value.data.dbl = angsep_calc(pVals[0].data.dbl, pVals[1].data.dbl, pVals[2].data.dbl, pVals[3].data.dbl); /* Min/Max functions taking 1 or 2 arguments */ case min1_fct: /* No constant vectors! */ if( this->type == DOUBLE ) this->value.data.dbl = pVals[0].data.dbl; else if( this->type == LONG ) this->value.data.lng = pVals[0].data.lng; else if( this->type == BITSTR ) strcpy(this->value.data.str, pVals[0].data.str); break; case min2_fct: if( this->type == DOUBLE ) this->value.data.dbl = minvalue( pVals[0].data.dbl, pVals[1].data.dbl ); else if( this->type == LONG ) this->value.data.lng = minvalue( pVals[0].data.lng, pVals[1].data.lng ); break; case max1_fct: /* No constant vectors! */ if( this->type == DOUBLE ) this->value.data.dbl = pVals[0].data.dbl; else if( this->type == LONG ) this->value.data.lng = pVals[0].data.lng; else if( this->type == BITSTR ) strcpy(this->value.data.str, pVals[0].data.str); break; case max2_fct: if( this->type == DOUBLE ) this->value.data.dbl = maxvalue( pVals[0].data.dbl, pVals[1].data.dbl ); else if( this->type == LONG ) this->value.data.lng = maxvalue( pVals[0].data.lng, pVals[1].data.lng ); break; /* Boolean SAO region Functions... scalar or vector dbls */ case near_fct: this->value.data.log = bnear( pVals[0].data.dbl, pVals[1].data.dbl, pVals[2].data.dbl ); break; case circle_fct: this->value.data.log = circle( pVals[0].data.dbl, pVals[1].data.dbl, pVals[2].data.dbl, pVals[3].data.dbl, pVals[4].data.dbl ); break; case box_fct: this->value.data.log = saobox( pVals[0].data.dbl, pVals[1].data.dbl, pVals[2].data.dbl, pVals[3].data.dbl, pVals[4].data.dbl, pVals[5].data.dbl, pVals[6].data.dbl ); break; case elps_fct: this->value.data.log = ellipse( pVals[0].data.dbl, pVals[1].data.dbl, pVals[2].data.dbl, pVals[3].data.dbl, pVals[4].data.dbl, pVals[5].data.dbl, pVals[6].data.dbl ); break; /* C Conditional expression: bool ? expr : expr */ case ifthenelse_fct: switch( this->type ) { case BOOLEAN: this->value.data.log = ( pVals[2].data.log ? pVals[0].data.log : pVals[1].data.log ); break; case LONG: this->value.data.lng = ( pVals[2].data.log ? pVals[0].data.lng : pVals[1].data.lng ); break; case DOUBLE: this->value.data.dbl = ( pVals[2].data.log ? pVals[0].data.dbl : pVals[1].data.dbl ); break; case STRING: strcpy(this->value.data.str, ( pVals[2].data.log ? pVals[0].data.str : pVals[1].data.str ) ); break; } break; /* String functions */ case strmid_fct: cstrmid(this->value.data.str, this->value.nelem, pVals[0].data.str, pVals[0].nelem, pVals[1].data.lng); break; case strpos_fct: { char *res = strstr(pVals[0].data.str, pVals[1].data.str); if (res == NULL) { this->value.data.lng = 0; } else { this->value.data.lng = (res - pVals[0].data.str) + 1; } break; } } this->operation = CONST_OP; } else { Allocate_Ptrs( this ); row = gParse.nRows; elem = row * this->value.nelem; if( !gParse.status ) { switch( this->operation ) { /* Special functions with no arguments */ case row_fct: while( row-- ) { this->value.data.lngptr[row] = gParse.firstRow + row; this->value.undef[row] = 0; } break; case null_fct: if( this->type==LONG ) { while( row-- ) { this->value.data.lngptr[row] = 0; this->value.undef[row] = 1; } } else if( this->type==STRING ) { while( row-- ) { this->value.data.strptr[row][0] = '\0'; this->value.undef[row] = 1; } } break; case rnd_fct: while( elem-- ) { this->value.data.dblptr[elem] = ran1(); this->value.undef[elem] = 0; } break; case gasrnd_fct: while( elem-- ) { this->value.data.dblptr[elem] = gasdev(); this->value.undef[elem] = 0; } break; case poirnd_fct: if( theParams[0]->type==DOUBLE ) { if (theParams[0]->operation == CONST_OP) { while( elem-- ) { this->value.undef[elem] = (pVals[0].data.dbl < 0); if (! this->value.undef[elem]) { this->value.data.lngptr[elem] = poidev(pVals[0].data.dbl); } } } else { while( elem-- ) { this->value.undef[elem] = theParams[0]->value.undef[elem]; if (theParams[0]->value.data.dblptr[elem] < 0) this->value.undef[elem] = 1; if (! this->value.undef[elem]) { this->value.data.lngptr[elem] = poidev(theParams[0]->value.data.dblptr[elem]); } } /* while */ } /* ! CONST_OP */ } else { /* LONG */ if (theParams[0]->operation == CONST_OP) { while( elem-- ) { this->value.undef[elem] = (pVals[0].data.lng < 0); if (! this->value.undef[elem]) { this->value.data.lngptr[elem] = poidev(pVals[0].data.lng); } } } else { while( elem-- ) { this->value.undef[elem] = theParams[0]->value.undef[elem]; if (theParams[0]->value.data.lngptr[elem] < 0) this->value.undef[elem] = 1; if (! this->value.undef[elem]) { this->value.data.lngptr[elem] = poidev(theParams[0]->value.data.lngptr[elem]); } } /* while */ } /* ! CONST_OP */ } /* END LONG */ break; /* Non-Trig single-argument functions */ case sum_fct: elem = row * theParams[0]->value.nelem; if( theParams[0]->type==BOOLEAN ) { while( row-- ) { this->value.data.lngptr[row] = 0; /* Default is UNDEF until a defined value is found */ this->value.undef[row] = 1; nelem = theParams[0]->value.nelem; while( nelem-- ) { elem--; if ( ! theParams[0]->value.undef[elem] ) { this->value.data.lngptr[row] += ( theParams[0]->value.data.logptr[elem] ? 1 : 0 ); this->value.undef[row] = 0; } } } } else if( theParams[0]->type==LONG ) { while( row-- ) { this->value.data.lngptr[row] = 0; /* Default is UNDEF until a defined value is found */ this->value.undef[row] = 1; nelem = theParams[0]->value.nelem; while( nelem-- ) { elem--; if ( ! theParams[0]->value.undef[elem] ) { this->value.data.lngptr[row] += theParams[0]->value.data.lngptr[elem]; this->value.undef[row] = 0; } } } } else if( theParams[0]->type==DOUBLE ){ while( row-- ) { this->value.data.dblptr[row] = 0.0; /* Default is UNDEF until a defined value is found */ this->value.undef[row] = 1; nelem = theParams[0]->value.nelem; while( nelem-- ) { elem--; if ( ! theParams[0]->value.undef[elem] ) { this->value.data.dblptr[row] += theParams[0]->value.data.dblptr[elem]; this->value.undef[row] = 0; } } } } else { /* BITSTR */ nelem = theParams[0]->value.nelem; while( row-- ) { char *sptr1 = theParams[0]->value.data.strptr[row]; this->value.data.lngptr[row] = 0; this->value.undef[row] = 0; while (*sptr1) { if (*sptr1 == '1') this->value.data.lngptr[row] ++; sptr1++; } } } break; case average_fct: elem = row * theParams[0]->value.nelem; if( theParams[0]->type==LONG ) { while( row-- ) { int count = 0; this->value.data.dblptr[row] = 0; nelem = theParams[0]->value.nelem; while( nelem-- ) { elem--; if (theParams[0]->value.undef[elem] == 0) { this->value.data.dblptr[row] += theParams[0]->value.data.lngptr[elem]; count ++; } } if (count == 0) { this->value.undef[row] = 1; } else { this->value.undef[row] = 0; this->value.data.dblptr[row] /= count; } } } else if( theParams[0]->type==DOUBLE ){ while( row-- ) { int count = 0; this->value.data.dblptr[row] = 0; nelem = theParams[0]->value.nelem; while( nelem-- ) { elem--; if (theParams[0]->value.undef[elem] == 0) { this->value.data.dblptr[row] += theParams[0]->value.data.dblptr[elem]; count ++; } } if (count == 0) { this->value.undef[row] = 1; } else { this->value.undef[row] = 0; this->value.data.dblptr[row] /= count; } } } break; case stddev_fct: elem = row * theParams[0]->value.nelem; if( theParams[0]->type==LONG ) { /* Compute the mean value */ while( row-- ) { int count = 0; double sum = 0, sum2 = 0; nelem = theParams[0]->value.nelem; while( nelem-- ) { elem--; if (theParams[0]->value.undef[elem] == 0) { sum += theParams[0]->value.data.lngptr[elem]; count ++; } } if (count > 1) { sum /= count; /* Compute the sum of squared deviations */ nelem = theParams[0]->value.nelem; elem += nelem; /* Reset elem for second pass */ while( nelem-- ) { elem--; if (theParams[0]->value.undef[elem] == 0) { double dx = (theParams[0]->value.data.lngptr[elem] - sum); sum2 += (dx*dx); } } sum2 /= (double)count-1; this->value.undef[row] = 0; this->value.data.dblptr[row] = sqrt(sum2); } else { this->value.undef[row] = 0; /* STDDEV => 0 */ this->value.data.dblptr[row] = 0; } } } else if( theParams[0]->type==DOUBLE ){ /* Compute the mean value */ while( row-- ) { int count = 0; double sum = 0, sum2 = 0; nelem = theParams[0]->value.nelem; while( nelem-- ) { elem--; if (theParams[0]->value.undef[elem] == 0) { sum += theParams[0]->value.data.dblptr[elem]; count ++; } } if (count > 1) { sum /= count; /* Compute the sum of squared deviations */ nelem = theParams[0]->value.nelem; elem += nelem; /* Reset elem for second pass */ while( nelem-- ) { elem--; if (theParams[0]->value.undef[elem] == 0) { double dx = (theParams[0]->value.data.dblptr[elem] - sum); sum2 += (dx*dx); } } sum2 /= (double)count-1; this->value.undef[row] = 0; this->value.data.dblptr[row] = sqrt(sum2); } else { this->value.undef[row] = 0; /* STDDEV => 0 */ this->value.data.dblptr[row] = 0; } } } break; case median_fct: elem = row * theParams[0]->value.nelem; nelem = theParams[0]->value.nelem; if( theParams[0]->type==LONG ) { long *dptr = theParams[0]->value.data.lngptr; char *uptr = theParams[0]->value.undef; long *mptr = (long *) malloc(sizeof(long)*nelem); int irow; /* Allocate temporary storage for this row, since the quickselect function will scramble the contents */ if (mptr == 0) { yyerror("Could not allocate temporary memory in median function"); free( this->value.data.ptr ); break; } for (irow=0; irow 0) { this->value.undef[irow] = 0; this->value.data.lngptr[irow] = qselect_median_lng(mptr, nelem1); } else { this->value.undef[irow] = 1; this->value.data.lngptr[irow] = 0; } } free(mptr); } else { double *dptr = theParams[0]->value.data.dblptr; char *uptr = theParams[0]->value.undef; double *mptr = (double *) malloc(sizeof(double)*nelem); int irow; /* Allocate temporary storage for this row, since the quickselect function will scramble the contents */ if (mptr == 0) { yyerror("Could not allocate temporary memory in median function"); free( this->value.data.ptr ); break; } for (irow=0; irow 0) { this->value.undef[irow] = 0; this->value.data.dblptr[irow] = qselect_median_dbl(mptr, nelem1); } else { this->value.undef[irow] = 1; this->value.data.dblptr[irow] = 0; } } free(mptr); } break; case abs_fct: if( theParams[0]->type==DOUBLE ) while( elem-- ) { dval = theParams[0]->value.data.dblptr[elem]; this->value.data.dblptr[elem] = (dval>0.0 ? dval : -dval); this->value.undef[elem] = theParams[0]->value.undef[elem]; } else while( elem-- ) { ival = theParams[0]->value.data.lngptr[elem]; this->value.data.lngptr[elem] = (ival> 0 ? ival : -ival); this->value.undef[elem] = theParams[0]->value.undef[elem]; } break; /* Special Null-Handling Functions */ case nonnull_fct: nelem = theParams[0]->value.nelem; if ( theParams[0]->type==STRING ) nelem = 1; elem = row * nelem; while( row-- ) { int nelem1 = nelem; this->value.undef[row] = 0; /* Initialize to 0 (defined) */ this->value.data.lngptr[row] = 0; while( nelem1-- ) { elem --; if ( theParams[0]->value.undef[elem] == 0 ) this->value.data.lngptr[row] ++; } } break; case isnull_fct: if( theParams[0]->type==STRING ) elem = row; while( elem-- ) { this->value.data.logptr[elem] = theParams[0]->value.undef[elem]; this->value.undef[elem] = 0; } break; case defnull_fct: switch( this->type ) { case BOOLEAN: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=2; while( i-- ) if( vector[i]>1 ) { pNull[i] = theParams[i]->value.undef[elem]; pVals[i].data.log = theParams[i]->value.data.logptr[elem]; } else if( vector[i] ) { pNull[i] = theParams[i]->value.undef[row]; pVals[i].data.log = theParams[i]->value.data.logptr[row]; } if( pNull[0] ) { this->value.undef[elem] = pNull[1]; this->value.data.logptr[elem] = pVals[1].data.log; } else { this->value.undef[elem] = 0; this->value.data.logptr[elem] = pVals[0].data.log; } } } break; case LONG: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=2; while( i-- ) if( vector[i]>1 ) { pNull[i] = theParams[i]->value.undef[elem]; pVals[i].data.lng = theParams[i]->value.data.lngptr[elem]; } else if( vector[i] ) { pNull[i] = theParams[i]->value.undef[row]; pVals[i].data.lng = theParams[i]->value.data.lngptr[row]; } if( pNull[0] ) { this->value.undef[elem] = pNull[1]; this->value.data.lngptr[elem] = pVals[1].data.lng; } else { this->value.undef[elem] = 0; this->value.data.lngptr[elem] = pVals[0].data.lng; } } } break; case DOUBLE: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=2; while( i-- ) if( vector[i]>1 ) { pNull[i] = theParams[i]->value.undef[elem]; pVals[i].data.dbl = theParams[i]->value.data.dblptr[elem]; } else if( vector[i] ) { pNull[i] = theParams[i]->value.undef[row]; pVals[i].data.dbl = theParams[i]->value.data.dblptr[row]; } if( pNull[0] ) { this->value.undef[elem] = pNull[1]; this->value.data.dblptr[elem] = pVals[1].data.dbl; } else { this->value.undef[elem] = 0; this->value.data.dblptr[elem] = pVals[0].data.dbl; } } } break; case STRING: while( row-- ) { i=2; while( i-- ) if( vector[i] ) { pNull[i] = theParams[i]->value.undef[row]; strcpy(pVals[i].data.str, theParams[i]->value.data.strptr[row]); } if( pNull[0] ) { this->value.undef[row] = pNull[1]; strcpy(this->value.data.strptr[row],pVals[1].data.str); } else { this->value.undef[elem] = 0; strcpy(this->value.data.strptr[row],pVals[0].data.str); } } } break; /* Math functions with 1 double argument */ case sin_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { this->value.data.dblptr[elem] = sin( theParams[0]->value.data.dblptr[elem] ); } break; case cos_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { this->value.data.dblptr[elem] = cos( theParams[0]->value.data.dblptr[elem] ); } break; case tan_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { this->value.data.dblptr[elem] = tan( theParams[0]->value.data.dblptr[elem] ); } break; case asin_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { dval = theParams[0]->value.data.dblptr[elem]; if( dval<-1.0 || dval>1.0 ) { this->value.data.dblptr[elem] = 0.0; this->value.undef[elem] = 1; } else this->value.data.dblptr[elem] = asin( dval ); } break; case acos_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { dval = theParams[0]->value.data.dblptr[elem]; if( dval<-1.0 || dval>1.0 ) { this->value.data.dblptr[elem] = 0.0; this->value.undef[elem] = 1; } else this->value.data.dblptr[elem] = acos( dval ); } break; case atan_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { dval = theParams[0]->value.data.dblptr[elem]; this->value.data.dblptr[elem] = atan( dval ); } break; case sinh_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { this->value.data.dblptr[elem] = sinh( theParams[0]->value.data.dblptr[elem] ); } break; case cosh_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { this->value.data.dblptr[elem] = cosh( theParams[0]->value.data.dblptr[elem] ); } break; case tanh_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { this->value.data.dblptr[elem] = tanh( theParams[0]->value.data.dblptr[elem] ); } break; case exp_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { dval = theParams[0]->value.data.dblptr[elem]; this->value.data.dblptr[elem] = exp( dval ); } break; case log_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { dval = theParams[0]->value.data.dblptr[elem]; if( dval<=0.0 ) { this->value.data.dblptr[elem] = 0.0; this->value.undef[elem] = 1; } else this->value.data.dblptr[elem] = log( dval ); } break; case log10_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { dval = theParams[0]->value.data.dblptr[elem]; if( dval<=0.0 ) { this->value.data.dblptr[elem] = 0.0; this->value.undef[elem] = 1; } else this->value.data.dblptr[elem] = log10( dval ); } break; case sqrt_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { dval = theParams[0]->value.data.dblptr[elem]; if( dval<0.0 ) { this->value.data.dblptr[elem] = 0.0; this->value.undef[elem] = 1; } else this->value.data.dblptr[elem] = sqrt( dval ); } break; case ceil_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { this->value.data.dblptr[elem] = ceil( theParams[0]->value.data.dblptr[elem] ); } break; case floor_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { this->value.data.dblptr[elem] = floor( theParams[0]->value.data.dblptr[elem] ); } break; case round_fct: while( elem-- ) if( !(this->value.undef[elem] = theParams[0]->value.undef[elem]) ) { this->value.data.dblptr[elem] = floor( theParams[0]->value.data.dblptr[elem] + 0.5); } break; /* Two-argument Trig Functions */ case atan2_fct: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=2; while( i-- ) if( vector[i]>1 ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( !(this->value.undef[elem] = (pNull[0] || pNull[1]) ) ) this->value.data.dblptr[elem] = atan2( pVals[0].data.dbl, pVals[1].data.dbl ); } } break; /* Four-argument ANGSEP Function */ case angsep_fct: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=4; while( i-- ) if( vector[i]>1 ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( !(this->value.undef[elem] = (pNull[0] || pNull[1] || pNull[2] || pNull[3]) ) ) this->value.data.dblptr[elem] = angsep_calc(pVals[0].data.dbl, pVals[1].data.dbl, pVals[2].data.dbl, pVals[3].data.dbl); } } break; /* Min/Max functions taking 1 or 2 arguments */ case min1_fct: elem = row * theParams[0]->value.nelem; if( this->type==LONG ) { long minVal=0; while( row-- ) { valInit = 1; this->value.undef[row] = 1; nelem = theParams[0]->value.nelem; while( nelem-- ) { elem--; if ( !theParams[0]->value.undef[elem] ) { if ( valInit ) { valInit = 0; minVal = theParams[0]->value.data.lngptr[elem]; } else { minVal = minvalue( minVal, theParams[0]->value.data.lngptr[elem] ); } this->value.undef[row] = 0; } } this->value.data.lngptr[row] = minVal; } } else if( this->type==DOUBLE ) { double minVal=0.0; while( row-- ) { valInit = 1; this->value.undef[row] = 1; nelem = theParams[0]->value.nelem; while( nelem-- ) { elem--; if ( !theParams[0]->value.undef[elem] ) { if ( valInit ) { valInit = 0; minVal = theParams[0]->value.data.dblptr[elem]; } else { minVal = minvalue( minVal, theParams[0]->value.data.dblptr[elem] ); } this->value.undef[row] = 0; } } this->value.data.dblptr[row] = minVal; } } else if( this->type==BITSTR ) { char minVal; while( row-- ) { char *sptr1 = theParams[0]->value.data.strptr[row]; minVal = '1'; while (*sptr1) { if (*sptr1 == '0') minVal = '0'; sptr1++; } this->value.data.strptr[row][0] = minVal; this->value.data.strptr[row][1] = 0; /* Null terminate */ } } break; case min2_fct: if( this->type==LONG ) { while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=2; while( i-- ) if( vector[i]>1 ) { pVals[i].data.lng = theParams[i]->value.data.lngptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.lng = theParams[i]->value.data.lngptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( pNull[0] && pNull[1] ) { this->value.undef[elem] = 1; this->value.data.lngptr[elem] = 0; } else if (pNull[0]) { this->value.undef[elem] = 0; this->value.data.lngptr[elem] = pVals[1].data.lng; } else if (pNull[1]) { this->value.undef[elem] = 0; this->value.data.lngptr[elem] = pVals[0].data.lng; } else { this->value.undef[elem] = 0; this->value.data.lngptr[elem] = minvalue( pVals[0].data.lng, pVals[1].data.lng ); } } } } else if( this->type==DOUBLE ) { while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=2; while( i-- ) if( vector[i]>1 ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( pNull[0] && pNull[1] ) { this->value.undef[elem] = 1; this->value.data.dblptr[elem] = 0; } else if (pNull[0]) { this->value.undef[elem] = 0; this->value.data.dblptr[elem] = pVals[1].data.dbl; } else if (pNull[1]) { this->value.undef[elem] = 0; this->value.data.dblptr[elem] = pVals[0].data.dbl; } else { this->value.undef[elem] = 0; this->value.data.dblptr[elem] = minvalue( pVals[0].data.dbl, pVals[1].data.dbl ); } } } } break; case max1_fct: elem = row * theParams[0]->value.nelem; if( this->type==LONG ) { long maxVal=0; while( row-- ) { valInit = 1; this->value.undef[row] = 1; nelem = theParams[0]->value.nelem; while( nelem-- ) { elem--; if ( !theParams[0]->value.undef[elem] ) { if ( valInit ) { valInit = 0; maxVal = theParams[0]->value.data.lngptr[elem]; } else { maxVal = maxvalue( maxVal, theParams[0]->value.data.lngptr[elem] ); } this->value.undef[row] = 0; } } this->value.data.lngptr[row] = maxVal; } } else if( this->type==DOUBLE ) { double maxVal=0.0; while( row-- ) { valInit = 1; this->value.undef[row] = 1; nelem = theParams[0]->value.nelem; while( nelem-- ) { elem--; if ( !theParams[0]->value.undef[elem] ) { if ( valInit ) { valInit = 0; maxVal = theParams[0]->value.data.dblptr[elem]; } else { maxVal = maxvalue( maxVal, theParams[0]->value.data.dblptr[elem] ); } this->value.undef[row] = 0; } } this->value.data.dblptr[row] = maxVal; } } else if( this->type==BITSTR ) { char maxVal; while( row-- ) { char *sptr1 = theParams[0]->value.data.strptr[row]; maxVal = '0'; while (*sptr1) { if (*sptr1 == '1') maxVal = '1'; sptr1++; } this->value.data.strptr[row][0] = maxVal; this->value.data.strptr[row][1] = 0; /* Null terminate */ } } break; case max2_fct: if( this->type==LONG ) { while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=2; while( i-- ) if( vector[i]>1 ) { pVals[i].data.lng = theParams[i]->value.data.lngptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.lng = theParams[i]->value.data.lngptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( pNull[0] && pNull[1] ) { this->value.undef[elem] = 1; this->value.data.lngptr[elem] = 0; } else if (pNull[0]) { this->value.undef[elem] = 0; this->value.data.lngptr[elem] = pVals[1].data.lng; } else if (pNull[1]) { this->value.undef[elem] = 0; this->value.data.lngptr[elem] = pVals[0].data.lng; } else { this->value.undef[elem] = 0; this->value.data.lngptr[elem] = maxvalue( pVals[0].data.lng, pVals[1].data.lng ); } } } } else if( this->type==DOUBLE ) { while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=2; while( i-- ) if( vector[i]>1 ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( pNull[0] && pNull[1] ) { this->value.undef[elem] = 1; this->value.data.dblptr[elem] = 0; } else if (pNull[0]) { this->value.undef[elem] = 0; this->value.data.dblptr[elem] = pVals[1].data.dbl; } else if (pNull[1]) { this->value.undef[elem] = 0; this->value.data.dblptr[elem] = pVals[0].data.dbl; } else { this->value.undef[elem] = 0; this->value.data.dblptr[elem] = maxvalue( pVals[0].data.dbl, pVals[1].data.dbl ); } } } } break; /* Boolean SAO region Functions... scalar or vector dbls */ case near_fct: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=3; while( i-- ) if( vector[i]>1 ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( !(this->value.undef[elem] = (pNull[0] || pNull[1] || pNull[2]) ) ) this->value.data.logptr[elem] = bnear( pVals[0].data.dbl, pVals[1].data.dbl, pVals[2].data.dbl ); } } break; case circle_fct: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=5; while( i-- ) if( vector[i]>1 ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( !(this->value.undef[elem] = (pNull[0] || pNull[1] || pNull[2] || pNull[3] || pNull[4]) ) ) this->value.data.logptr[elem] = circle( pVals[0].data.dbl, pVals[1].data.dbl, pVals[2].data.dbl, pVals[3].data.dbl, pVals[4].data.dbl ); } } break; case box_fct: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=7; while( i-- ) if( vector[i]>1 ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( !(this->value.undef[elem] = (pNull[0] || pNull[1] || pNull[2] || pNull[3] || pNull[4] || pNull[5] || pNull[6] ) ) ) this->value.data.logptr[elem] = saobox( pVals[0].data.dbl, pVals[1].data.dbl, pVals[2].data.dbl, pVals[3].data.dbl, pVals[4].data.dbl, pVals[5].data.dbl, pVals[6].data.dbl ); } } break; case elps_fct: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; i=7; while( i-- ) if( vector[i]>1 ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( !(this->value.undef[elem] = (pNull[0] || pNull[1] || pNull[2] || pNull[3] || pNull[4] || pNull[5] || pNull[6] ) ) ) this->value.data.logptr[elem] = ellipse( pVals[0].data.dbl, pVals[1].data.dbl, pVals[2].data.dbl, pVals[3].data.dbl, pVals[4].data.dbl, pVals[5].data.dbl, pVals[6].data.dbl ); } } break; /* C Conditional expression: bool ? expr : expr */ case ifthenelse_fct: switch( this->type ) { case BOOLEAN: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; if( vector[2]>1 ) { pVals[2].data.log = theParams[2]->value.data.logptr[elem]; pNull[2] = theParams[2]->value.undef[elem]; } else if( vector[2] ) { pVals[2].data.log = theParams[2]->value.data.logptr[row]; pNull[2] = theParams[2]->value.undef[row]; } i=2; while( i-- ) if( vector[i]>1 ) { pVals[i].data.log = theParams[i]->value.data.logptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.log = theParams[i]->value.data.logptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( !(this->value.undef[elem] = pNull[2]) ) { if( pVals[2].data.log ) { this->value.data.logptr[elem] = pVals[0].data.log; this->value.undef[elem] = pNull[0]; } else { this->value.data.logptr[elem] = pVals[1].data.log; this->value.undef[elem] = pNull[1]; } } } } break; case LONG: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; if( vector[2]>1 ) { pVals[2].data.log = theParams[2]->value.data.logptr[elem]; pNull[2] = theParams[2]->value.undef[elem]; } else if( vector[2] ) { pVals[2].data.log = theParams[2]->value.data.logptr[row]; pNull[2] = theParams[2]->value.undef[row]; } i=2; while( i-- ) if( vector[i]>1 ) { pVals[i].data.lng = theParams[i]->value.data.lngptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.lng = theParams[i]->value.data.lngptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( !(this->value.undef[elem] = pNull[2]) ) { if( pVals[2].data.log ) { this->value.data.lngptr[elem] = pVals[0].data.lng; this->value.undef[elem] = pNull[0]; } else { this->value.data.lngptr[elem] = pVals[1].data.lng; this->value.undef[elem] = pNull[1]; } } } } break; case DOUBLE: while( row-- ) { nelem = this->value.nelem; while( nelem-- ) { elem--; if( vector[2]>1 ) { pVals[2].data.log = theParams[2]->value.data.logptr[elem]; pNull[2] = theParams[2]->value.undef[elem]; } else if( vector[2] ) { pVals[2].data.log = theParams[2]->value.data.logptr[row]; pNull[2] = theParams[2]->value.undef[row]; } i=2; while( i-- ) if( vector[i]>1 ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[elem]; pNull[i] = theParams[i]->value.undef[elem]; } else if( vector[i] ) { pVals[i].data.dbl = theParams[i]->value.data.dblptr[row]; pNull[i] = theParams[i]->value.undef[row]; } if( !(this->value.undef[elem] = pNull[2]) ) { if( pVals[2].data.log ) { this->value.data.dblptr[elem] = pVals[0].data.dbl; this->value.undef[elem] = pNull[0]; } else { this->value.data.dblptr[elem] = pVals[1].data.dbl; this->value.undef[elem] = pNull[1]; } } } } break; case STRING: while( row-- ) { if( vector[2] ) { pVals[2].data.log = theParams[2]->value.data.logptr[row]; pNull[2] = theParams[2]->value.undef[row]; } i=2; while( i-- ) if( vector[i] ) { strcpy( pVals[i].data.str, theParams[i]->value.data.strptr[row] ); pNull[i] = theParams[i]->value.undef[row]; } if( !(this->value.undef[row] = pNull[2]) ) { if( pVals[2].data.log ) { strcpy( this->value.data.strptr[row], pVals[0].data.str ); this->value.undef[row] = pNull[0]; } else { strcpy( this->value.data.strptr[row], pVals[1].data.str ); this->value.undef[row] = pNull[1]; } } else { this->value.data.strptr[row][0] = '\0'; } } break; } break; /* String functions */ case strmid_fct: { int strconst = theParams[0]->operation == CONST_OP; int posconst = theParams[1]->operation == CONST_OP; int lenconst = theParams[2]->operation == CONST_OP; int dest_len = this->value.nelem; int src_len = theParams[0]->value.nelem; while (row--) { int pos; int len; char *str; int undef = 0; if (posconst) { pos = theParams[1]->value.data.lng; } else { pos = theParams[1]->value.data.lngptr[row]; if (theParams[1]->value.undef[row]) undef = 1; } if (strconst) { str = theParams[0]->value.data.str; if (src_len == 0) src_len = strlen(str); } else { str = theParams[0]->value.data.strptr[row]; if (theParams[0]->value.undef[row]) undef = 1; } if (lenconst) { len = dest_len; } else { len = theParams[2]->value.data.lngptr[row]; if (theParams[2]->value.undef[row]) undef = 1; } this->value.data.strptr[row][0] = '\0'; if (pos == 0) undef = 1; if (! undef ) { if (cstrmid(this->value.data.strptr[row], len, str, src_len, pos) < 0) break; } this->value.undef[row] = undef; } } break; /* String functions */ case strpos_fct: { int const1 = theParams[0]->operation == CONST_OP; int const2 = theParams[1]->operation == CONST_OP; while (row--) { char *str1, *str2; int undef = 0; if (const1) { str1 = theParams[0]->value.data.str; } else { str1 = theParams[0]->value.data.strptr[row]; if (theParams[0]->value.undef[row]) undef = 1; } if (const2) { str2 = theParams[1]->value.data.str; } else { str2 = theParams[1]->value.data.strptr[row]; if (theParams[1]->value.undef[row]) undef = 1; } this->value.data.lngptr[row] = 0; if (! undef ) { char *res = strstr(str1, str2); if (res == NULL) { undef = 1; this->value.data.lngptr[row] = 0; } else { this->value.data.lngptr[row] = (res - str1) + 1; } } this->value.undef[row] = undef; } } break; } /* End switch(this->operation) */ } /* End if (!gParse.status) */ } /* End non-constant operations */ i = this->nSubNodes; while( i-- ) { if( theParams[i]->operation>0 ) { /* Currently only numeric params allowed */ free( theParams[i]->value.data.ptr ); } } } static void Do_Deref( Node *this ) { Node *theVar, *theDims[MAXDIMS]; int isConst[MAXDIMS], allConst; long dimVals[MAXDIMS]; int i, nDims; long row, elem, dsize; theVar = gParse.Nodes + this->SubNodes[0]; i = nDims = this->nSubNodes-1; allConst = 1; while( i-- ) { theDims[i] = gParse.Nodes + this->SubNodes[i+1]; isConst[i] = ( theDims[i]->operation==CONST_OP ); if( isConst[i] ) dimVals[i] = theDims[i]->value.data.lng; else allConst = 0; } if( this->type==DOUBLE ) { dsize = sizeof( double ); } else if( this->type==LONG ) { dsize = sizeof( long ); } else if( this->type==BOOLEAN ) { dsize = sizeof( char ); } else dsize = 0; Allocate_Ptrs( this ); if( !gParse.status ) { if( allConst && theVar->value.naxis==nDims ) { /* Dereference completely using constant indices */ elem = 0; i = nDims; while( i-- ) { if( dimVals[i]<1 || dimVals[i]>theVar->value.naxes[i] ) break; elem = theVar->value.naxes[i]*elem + dimVals[i]-1; } if( i<0 ) { for( row=0; rowtype==STRING ) this->value.undef[row] = theVar->value.undef[row]; else if( this->type==BITSTR ) this->value.undef; /* Dummy - BITSTRs do not have undefs */ else this->value.undef[row] = theVar->value.undef[elem]; if( this->type==DOUBLE ) this->value.data.dblptr[row] = theVar->value.data.dblptr[elem]; else if( this->type==LONG ) this->value.data.lngptr[row] = theVar->value.data.lngptr[elem]; else if( this->type==BOOLEAN ) this->value.data.logptr[row] = theVar->value.data.logptr[elem]; else { /* XXX Note, the below expression uses knowledge of the layout of the string format, namely (nelem+1) characters per string, followed by (nelem+1) "undef" values. */ this->value.data.strptr[row][0] = theVar->value.data.strptr[0][elem+row]; this->value.data.strptr[row][1] = 0; /* Null terminate */ } elem += theVar->value.nelem; } } else { yyerror("Index out of range"); free( this->value.data.ptr ); } } else if( allConst && nDims==1 ) { /* Reduce dimensions by 1, using a constant index */ if( dimVals[0] < 1 || dimVals[0] > theVar->value.naxes[ theVar->value.naxis-1 ] ) { yyerror("Index out of range"); free( this->value.data.ptr ); } else if ( this->type == BITSTR || this->type == STRING ) { elem = this->value.nelem * (dimVals[0]-1); for( row=0; rowvalue.undef) this->value.undef[row] = theVar->value.undef[row]; memcpy( (char*)this->value.data.strptr[0] + row*sizeof(char)*(this->value.nelem+1), (char*)theVar->value.data.strptr[0] + elem*sizeof(char), this->value.nelem * sizeof(char) ); /* Null terminate */ this->value.data.strptr[row][this->value.nelem] = 0; elem += theVar->value.nelem+1; } } else { elem = this->value.nelem * (dimVals[0]-1); for( row=0; rowvalue.undef + row*this->value.nelem, theVar->value.undef + elem, this->value.nelem * sizeof(char) ); memcpy( (char*)this->value.data.ptr + row*dsize*this->value.nelem, (char*)theVar->value.data.ptr + elem*dsize, this->value.nelem * dsize ); elem += theVar->value.nelem; } } } else if( theVar->value.naxis==nDims ) { /* Dereference completely using an expression for the indices */ for( row=0; rowvalue.undef[row] ) { yyerror("Null encountered as vector index"); free( this->value.data.ptr ); break; } else dimVals[i] = theDims[i]->value.data.lngptr[row]; } } if( gParse.status ) break; elem = 0; i = nDims; while( i-- ) { if( dimVals[i]<1 || dimVals[i]>theVar->value.naxes[i] ) break; elem = theVar->value.naxes[i]*elem + dimVals[i]-1; } if( i<0 ) { elem += row*theVar->value.nelem; if( this->type==STRING ) this->value.undef[row] = theVar->value.undef[row]; else if( this->type==BITSTR ) this->value.undef; /* Dummy - BITSTRs do not have undefs */ else this->value.undef[row] = theVar->value.undef[elem]; if( this->type==DOUBLE ) this->value.data.dblptr[row] = theVar->value.data.dblptr[elem]; else if( this->type==LONG ) this->value.data.lngptr[row] = theVar->value.data.lngptr[elem]; else if( this->type==BOOLEAN ) this->value.data.logptr[row] = theVar->value.data.logptr[elem]; else { /* XXX Note, the below expression uses knowledge of the layout of the string format, namely (nelem+1) characters per string, followed by (nelem+1) "undef" values. */ this->value.data.strptr[row][0] = theVar->value.data.strptr[0][elem+row]; this->value.data.strptr[row][1] = 0; /* Null terminate */ } } else { yyerror("Index out of range"); free( this->value.data.ptr ); } } } else { /* Reduce dimensions by 1, using a nonconstant expression */ for( row=0; rowvalue.undef[row] ) { yyerror("Null encountered as vector index"); free( this->value.data.ptr ); break; } else dimVals[0] = theDims[0]->value.data.lngptr[row]; if( dimVals[0] < 1 || dimVals[0] > theVar->value.naxes[ theVar->value.naxis-1 ] ) { yyerror("Index out of range"); free( this->value.data.ptr ); } else if ( this->type == BITSTR || this->type == STRING ) { elem = this->value.nelem * (dimVals[0]-1); elem += row*(theVar->value.nelem+1); if (this->value.undef) this->value.undef[row] = theVar->value.undef[row]; memcpy( (char*)this->value.data.strptr[0] + row*sizeof(char)*(this->value.nelem+1), (char*)theVar->value.data.strptr[0] + elem*sizeof(char), this->value.nelem * sizeof(char) ); /* Null terminate */ this->value.data.strptr[row][this->value.nelem] = 0; } else { elem = this->value.nelem * (dimVals[0]-1); elem += row*theVar->value.nelem; memcpy( this->value.undef + row*this->value.nelem, theVar->value.undef + elem, this->value.nelem * sizeof(char) ); memcpy( (char*)this->value.data.ptr + row*dsize*this->value.nelem, (char*)theVar->value.data.ptr + elem*dsize, this->value.nelem * dsize ); } } } } if( theVar->operation>0 ) { if (theVar->type == STRING || theVar->type == BITSTR) free(theVar->value.data.strptr[0] ); else free( theVar->value.data.ptr ); } for( i=0; ioperation>0 ) { free( theDims[i]->value.data.ptr ); } } static void Do_GTI( Node *this ) { Node *theExpr, *theTimes; double *start, *stop, *times; long elem, nGTI, gti; int ordered; theTimes = gParse.Nodes + this->SubNodes[0]; theExpr = gParse.Nodes + this->SubNodes[1]; nGTI = theTimes->value.nelem; start = theTimes->value.data.dblptr; stop = theTimes->value.data.dblptr + nGTI; ordered = theTimes->type; if( theExpr->operation==CONST_OP ) { this->value.data.log = (Search_GTI( theExpr->value.data.dbl, nGTI, start, stop, ordered )>=0); this->operation = CONST_OP; } else { Allocate_Ptrs( this ); times = theExpr->value.data.dblptr; if( !gParse.status ) { elem = gParse.nRows * this->value.nelem; if( nGTI ) { gti = -1; while( elem-- ) { if( (this->value.undef[elem] = theExpr->value.undef[elem]) ) continue; /* Before searching entire GTI, check the GTI found last time */ if( gti<0 || times[elem]stop[gti] ) { gti = Search_GTI( times[elem], nGTI, start, stop, ordered ); } this->value.data.logptr[elem] = ( gti>=0 ); } } else while( elem-- ) { this->value.data.logptr[elem] = 0; this->value.undef[elem] = 0; } } } if( theExpr->operation>0 ) free( theExpr->value.data.ptr ); } static long Search_GTI( double evtTime, long nGTI, double *start, double *stop, int ordered ) { long gti, step; if( ordered && nGTI>15 ) { /* If time-ordered and lots of GTIs, */ /* use "FAST" Binary search algorithm */ if( evtTime>=start[0] && evtTime<=stop[nGTI-1] ) { gti = step = (nGTI >> 1); while(1) { if( step>1L ) step >>= 1; if( evtTime>stop[gti] ) { if( evtTime>=start[gti+1] ) gti += step; else { gti = -1L; break; } } else if( evtTime=start[gti] && evtTime<=stop[gti] ) break; } return( gti ); } static void Do_REG( Node *this ) { Node *theRegion, *theX, *theY; double Xval=0.0, Yval=0.0; char Xnull=0, Ynull=0; int Xvector, Yvector; long nelem, elem, rows; theRegion = gParse.Nodes + this->SubNodes[0]; theX = gParse.Nodes + this->SubNodes[1]; theY = gParse.Nodes + this->SubNodes[2]; Xvector = ( theX->operation!=CONST_OP ); if( Xvector ) Xvector = theX->value.nelem; else { Xval = theX->value.data.dbl; } Yvector = ( theY->operation!=CONST_OP ); if( Yvector ) Yvector = theY->value.nelem; else { Yval = theY->value.data.dbl; } if( !Xvector && !Yvector ) { this->value.data.log = ( fits_in_region( Xval, Yval, (SAORegion *)theRegion->value.data.ptr ) != 0 ); this->operation = CONST_OP; } else { Allocate_Ptrs( this ); if( !gParse.status ) { rows = gParse.nRows; nelem = this->value.nelem; elem = rows*nelem; while( rows-- ) { while( nelem-- ) { elem--; if( Xvector>1 ) { Xval = theX->value.data.dblptr[elem]; Xnull = theX->value.undef[elem]; } else if( Xvector ) { Xval = theX->value.data.dblptr[rows]; Xnull = theX->value.undef[rows]; } if( Yvector>1 ) { Yval = theY->value.data.dblptr[elem]; Ynull = theY->value.undef[elem]; } else if( Yvector ) { Yval = theY->value.data.dblptr[rows]; Ynull = theY->value.undef[rows]; } this->value.undef[elem] = ( Xnull || Ynull ); if( this->value.undef[elem] ) continue; this->value.data.logptr[elem] = ( fits_in_region( Xval, Yval, (SAORegion *)theRegion->value.data.ptr ) != 0 ); } nelem = this->value.nelem; } } } if( theX->operation>0 ) free( theX->value.data.ptr ); if( theY->operation>0 ) free( theY->value.data.ptr ); } static void Do_Vector( Node *this ) { Node *that; long row, elem, idx, jdx, offset=0; int node; Allocate_Ptrs( this ); if( !gParse.status ) { for( node=0; nodenSubNodes; node++ ) { that = gParse.Nodes + this->SubNodes[node]; if( that->operation == CONST_OP ) { idx = gParse.nRows*this->value.nelem + offset; while( (idx-=this->value.nelem)>=0 ) { this->value.undef[idx] = 0; switch( this->type ) { case BOOLEAN: this->value.data.logptr[idx] = that->value.data.log; break; case LONG: this->value.data.lngptr[idx] = that->value.data.lng; break; case DOUBLE: this->value.data.dblptr[idx] = that->value.data.dbl; break; } } } else { row = gParse.nRows; idx = row * that->value.nelem; while( row-- ) { elem = that->value.nelem; jdx = row*this->value.nelem + offset; while( elem-- ) { this->value.undef[jdx+elem] = that->value.undef[--idx]; switch( this->type ) { case BOOLEAN: this->value.data.logptr[jdx+elem] = that->value.data.logptr[idx]; break; case LONG: this->value.data.lngptr[jdx+elem] = that->value.data.lngptr[idx]; break; case DOUBLE: this->value.data.dblptr[jdx+elem] = that->value.data.dblptr[idx]; break; } } } } offset += that->value.nelem; } } for( node=0; node < this->nSubNodes; node++ ) if( OPER(this->SubNodes[node])>0 ) free( gParse.Nodes[this->SubNodes[node]].value.data.ptr ); } /*****************************************************************************/ /* Utility routines which perform the calculations on bits and SAO regions */ /*****************************************************************************/ static char bitlgte(char *bits1, int oper, char *bits2) { int val1, val2, nextbit; char result; int i, l1, l2, length, ldiff; char stream[256]; char chr1, chr2; l1 = strlen(bits1); l2 = strlen(bits2); if (l1 < l2) { length = l2; ldiff = l2 - l1; i=0; while( ldiff-- ) stream[i++] = '0'; while( l1-- ) stream[i++] = *(bits1++); stream[i] = '\0'; bits1 = stream; } else if (l2 < l1) { length = l1; ldiff = l1 - l2; i=0; while( ldiff-- ) stream[i++] = '0'; while( l2-- ) stream[i++] = *(bits2++); stream[i] = '\0'; bits2 = stream; } else length = l1; val1 = val2 = 0; nextbit = 1; while( length-- ) { chr1 = bits1[length]; chr2 = bits2[length]; if ((chr1 != 'x')&&(chr1 != 'X')&&(chr2 != 'x')&&(chr2 != 'X')) { if (chr1 == '1') val1 += nextbit; if (chr2 == '1') val2 += nextbit; nextbit *= 2; } } result = 0; switch (oper) { case LT: if (val1 < val2) result = 1; break; case LTE: if (val1 <= val2) result = 1; break; case GT: if (val1 > val2) result = 1; break; case GTE: if (val1 >= val2) result = 1; break; } return (result); } static void bitand(char *result,char *bitstrm1,char *bitstrm2) { int i, l1, l2, ldiff; char stream[256]; char chr1, chr2; l1 = strlen(bitstrm1); l2 = strlen(bitstrm2); if (l1 < l2) { ldiff = l2 - l1; i=0; while( ldiff-- ) stream[i++] = '0'; while( l1-- ) stream[i++] = *(bitstrm1++); stream[i] = '\0'; bitstrm1 = stream; } else if (l2 < l1) { ldiff = l1 - l2; i=0; while( ldiff-- ) stream[i++] = '0'; while( l2-- ) stream[i++] = *(bitstrm2++); stream[i] = '\0'; bitstrm2 = stream; } while ( (chr1 = *(bitstrm1++)) ) { chr2 = *(bitstrm2++); if ((chr1 == 'x') || (chr2 == 'x')) *result = 'x'; else if ((chr1 == '1') && (chr2 == '1')) *result = '1'; else *result = '0'; result++; } *result = '\0'; } static void bitor(char *result,char *bitstrm1,char *bitstrm2) { int i, l1, l2, ldiff; char stream[256]; char chr1, chr2; l1 = strlen(bitstrm1); l2 = strlen(bitstrm2); if (l1 < l2) { ldiff = l2 - l1; i=0; while( ldiff-- ) stream[i++] = '0'; while( l1-- ) stream[i++] = *(bitstrm1++); stream[i] = '\0'; bitstrm1 = stream; } else if (l2 < l1) { ldiff = l1 - l2; i=0; while( ldiff-- ) stream[i++] = '0'; while( l2-- ) stream[i++] = *(bitstrm2++); stream[i] = '\0'; bitstrm2 = stream; } while ( (chr1 = *(bitstrm1++)) ) { chr2 = *(bitstrm2++); if ((chr1 == '1') || (chr2 == '1')) *result = '1'; else if ((chr1 == '0') || (chr2 == '0')) *result = '0'; else *result = 'x'; result++; } *result = '\0'; } static void bitnot(char *result,char *bits) { int length; char chr; length = strlen(bits); while( length-- ) { chr = *(bits++); *(result++) = ( chr=='1' ? '0' : ( chr=='0' ? '1' : chr ) ); } *result = '\0'; } static char bitcmp(char *bitstrm1, char *bitstrm2) { int i, l1, l2, ldiff; char stream[256]; char chr1, chr2; l1 = strlen(bitstrm1); l2 = strlen(bitstrm2); if (l1 < l2) { ldiff = l2 - l1; i=0; while( ldiff-- ) stream[i++] = '0'; while( l1-- ) stream[i++] = *(bitstrm1++); stream[i] = '\0'; bitstrm1 = stream; } else if (l2 < l1) { ldiff = l1 - l2; i=0; while( ldiff-- ) stream[i++] = '0'; while( l2-- ) stream[i++] = *(bitstrm2++); stream[i] = '\0'; bitstrm2 = stream; } while( (chr1 = *(bitstrm1++)) ) { chr2 = *(bitstrm2++); if ( ((chr1 == '0') && (chr2 == '1')) || ((chr1 == '1') && (chr2 == '0')) ) return( 0 ); } return( 1 ); } static char bnear(double x, double y, double tolerance) { if (fabs(x - y) < tolerance) return ( 1 ); else return ( 0 ); } static char saobox(double xcen, double ycen, double xwid, double ywid, double rot, double xcol, double ycol) { double x,y,xprime,yprime,xmin,xmax,ymin,ymax,theta; theta = (rot / 180.0) * myPI; xprime = xcol - xcen; yprime = ycol - ycen; x = xprime * cos(theta) + yprime * sin(theta); y = -xprime * sin(theta) + yprime * cos(theta); xmin = - 0.5 * xwid; xmax = 0.5 * xwid; ymin = - 0.5 * ywid; ymax = 0.5 * ywid; if ((x >= xmin) && (x <= xmax) && (y >= ymin) && (y <= ymax)) return ( 1 ); else return ( 0 ); } static char circle(double xcen, double ycen, double rad, double xcol, double ycol) { double r2,dx,dy,dlen; dx = xcol - xcen; dy = ycol - ycen; dx *= dx; dy *= dy; dlen = dx + dy; r2 = rad * rad; if (dlen <= r2) return ( 1 ); else return ( 0 ); } static char ellipse(double xcen, double ycen, double xrad, double yrad, double rot, double xcol, double ycol) { double x,y,xprime,yprime,dx,dy,dlen,theta; theta = (rot / 180.0) * myPI; xprime = xcol - xcen; yprime = ycol - ycen; x = xprime * cos(theta) + yprime * sin(theta); y = -xprime * sin(theta) + yprime * cos(theta); dx = x / xrad; dy = y / yrad; dx *= dx; dy *= dy; dlen = dx + dy; if (dlen <= 1.0) return ( 1 ); else return ( 0 ); } /* * Extract substring */ int cstrmid(char *dest_str, int dest_len, char *src_str, int src_len, int pos) { /* char fill_char = ' '; */ char fill_char = '\0'; if (src_len == 0) { src_len = strlen(src_str); } /* .. if constant */ /* Fill destination with blanks */ if (pos < 0) { yyerror("STRMID(S,P,N) P must be 0 or greater"); return -1; } if (pos > src_len || pos == 0) { /* pos==0: blank string requested */ memset(dest_str, fill_char, dest_len); } else if (pos+dest_len > src_len) { /* Copy a subset */ int nsub = src_len-pos+1; int npad = dest_len - nsub; memcpy(dest_str, src_str+pos-1, nsub); /* Fill remaining string with blanks */ memset(dest_str+nsub, fill_char, npad); } else { /* Full string copy */ memcpy(dest_str, src_str+pos-1, dest_len); } dest_str[dest_len] = '\0'; /* Null-terminate */ return 0; } static void yyerror(char *s) { char msg[80]; if( !gParse.status ) gParse.status = PARSE_SYNTAX_ERR; strncpy(msg, s, 80); msg[79] = '\0'; ffpmsg(msg); } healpy-1.8.1/cfitsio/testprog.c0000654000175000017530000024765612272000775017114 0ustar zoncaplanck00000000000000#include #include #include "fitsio.h" int main(void); int main() { /* This is a big and complicated program that tests most of the cfitsio routines. This code does not represent the most efficient method of reading or writing FITS files because this code is primarily designed to stress the cfitsio library routines. */ char asciisum[17]; unsigned long checksum, datsum; int datastatus, hdustatus, filemode; int status, simple, bitpix, naxis, extend, hdutype, hdunum, tfields; long ii, jj, extvers; int nkeys, nfound, colnum, typecode, signval,nmsg; char cval, cvalstr[2]; long repeat, offset, width, jnulval; int anynull; /* float vers; */ unsigned char xinarray[21], binarray[21], boutarray[21], bnul; short iinarray[21], ioutarray[21], inul; int kinarray[21], koutarray[21], knul; long jinarray[21], joutarray[21], jnul; float einarray[21], eoutarray[21], enul, cinarray[42]; double dinarray[21], doutarray[21], dnul, minarray[42]; double scale, zero; long naxes[3], pcount, gcount, npixels, nrows, rowlen, firstpix[3]; int existkeys, morekeys, keynum; char larray[42], larray2[42], colname[70], tdisp[40], nulstr[40]; char oskey[] = "value_string"; char iskey[21]; int olkey = 1; int ilkey; short oshtkey, ishtkey; long ojkey = 11, ijkey; long otint = 12345678; float ofkey = 12.121212f; float oekey = 13.131313f, iekey; double ogkey = 14.1414141414141414; double odkey = 15.1515151515151515, idkey; double otfrac = .1234567890123456; double xrval,yrval,xrpix,yrpix,xinc,yinc,rot,xpos,ypos,xpix,ypix; char xcoordtype[] = "RA---TAN"; char ycoordtype[] = "DEC--TAN"; char ctype[5]; char *lsptr; /* pointer to long string value */ char comm[73]; char *comms[3]; char *inskey[21]; char *onskey[3] = {"first string", "second string", " "}; char *inclist[2] = {"key*", "newikys"}; char *exclist[2] = {"key_pr*", "key_pkls"}; int onlkey[3] = {1, 0, 1}, inlkey[3]; long onjkey[3] = {11, 12, 13}, injkey[3]; float onfkey[3] = {12.121212f, 13.131313f, 14.141414f}; float onekey[3] = {13.131313f, 14.141414f, 15.151515f}, inekey[3]; double ongkey[3] = {14.1414141414141414, 15.1515151515151515, 16.1616161616161616}; double ondkey[3] = {15.1515151515151515, 16.1616161616161616, 17.1717171717171717}, indkey[3]; long tbcol[5] = {1, 17, 28, 43, 56}; char filename[40], card[FLEN_CARD], card2[FLEN_CARD]; char keyword[FLEN_KEYWORD]; char value[FLEN_VALUE], comment[FLEN_COMMENT]; unsigned char uchars[80]; fitsfile *fptr, *tmpfptr; char *ttype[10], *tform[10], *tunit[10]; char tblname[40]; char binname[] = "Test-BINTABLE"; char templt[] = "testprog.tpt"; char errmsg[FLEN_ERRMSG]; short imgarray[30][19], imgarray2[20][10]; long fpixels[2], lpixels[2], inc[2]; status = 0; strcpy(tblname, "Test-ASCII"); /* ffvers(&vers); printf("CFITSIO TESTPROG, v%.3f\n\n",vers); */ printf("CFITSIO TESTPROG\n\n"); printf("Try opening then closing a nonexistent file:\n"); fits_open_file(&fptr, "tq123x.kjl", READWRITE, &status); printf(" ffopen fptr, status = %lu %d (expect an error)\n", (unsigned long) fptr, status); ffclos(fptr, &status); printf(" ffclos status = %d\n\n", status); ffcmsg(); status = 0; for (ii = 0; ii < 21; ii++) /* allocate space for string column value */ inskey[ii] = (char *) malloc(21); for (ii = 0; ii < 10; ii++) { ttype[ii] = (char *) malloc(20); tform[ii] = (char *) malloc(20); tunit[ii] = (char *) malloc(20); } comms[0] = comm; /* delete previous version of the file, if it exists (with ! prefix) */ strcpy(filename, "!testprog.fit"); status = 0; /* ##################### # create FITS file # ##################### */ ffinit(&fptr, filename, &status); printf("ffinit create new file status = %d\n", status); if (status) goto errstatus; filename[0] = '\0'; ffflnm(fptr, filename, &status); ffflmd(fptr, &filemode, &status); printf("Name of file = %s, I/O mode = %d\n", filename, filemode); simple = 1; bitpix = 32; naxis = 2; naxes[0] = 10; naxes[1] = 2; npixels = 20; pcount = 0; gcount = 1; extend = 1; /* ############################ # write single keywords # ############################ */ if (ffphps(fptr, bitpix, naxis, naxes, &status) > 0) printf("ffphps status = %d\n", status); if (ffprec(fptr, "key_prec= 'This keyword was written by fxprec' / comment goes here", &status) > 0 ) printf("ffprec status = %d\n", status); printf("\ntest writing of long string keywords:\n"); strcpy(card, "1234567890123456789012345678901234567890"); strcat(card, "12345678901234567890123456789012345"); ffpkys(fptr, "card1", card, "", &status); ffgkey(fptr, "card1", card2, comment, &status); printf(" %s\n%s\n", card, card2); strcpy(card, "1234567890123456789012345678901234567890"); strcat(card, "123456789012345678901234'6789012345"); ffpkys(fptr, "card2", card, "", &status); ffgkey(fptr, "card2", card2, comment, &status); printf(" %s\n%s\n", card, card2); strcpy(card, "1234567890123456789012345678901234567890"); strcat(card, "123456789012345678901234''789012345"); ffpkys(fptr, "card3", card, "", &status); ffgkey(fptr, "card3", card2, comment, &status); printf(" %s\n%s\n", card, card2); strcpy(card, "1234567890123456789012345678901234567890"); strcat(card, "123456789012345678901234567'9012345"); ffpkys(fptr, "card4", card, "", &status); ffgkey(fptr, "card4", card2, comment, &status); printf(" %s\n%s\n", card, card2); if (ffpkys(fptr, "key_pkys", oskey, "fxpkys comment", &status) > 0) printf("ffpkys status = %d\n", status); if (ffpkyl(fptr, "key_pkyl", olkey, "fxpkyl comment", &status) > 0) printf("ffpkyl status = %d\n", status); if (ffpkyj(fptr, "key_pkyj", ojkey, "fxpkyj comment", &status) > 0) printf("ffpkyj status = %d\n", status); if (ffpkyf(fptr, "key_pkyf", ofkey, 5, "fxpkyf comment", &status) > 0) printf("ffpkyf status = %d\n", status); if (ffpkye(fptr, "key_pkye", oekey, 6, "fxpkye comment", &status) > 0) printf("ffpkye status = %d\n", status); if (ffpkyg(fptr, "key_pkyg", ogkey, 14, "fxpkyg comment", &status) > 0) printf("ffpkyg status = %d\n", status); if (ffpkyd(fptr, "key_pkyd", odkey, 14, "fxpkyd comment", &status) > 0) printf("ffpkyd status = %d\n", status); if (ffpkyc(fptr, "key_pkyc", onekey, 6, "fxpkyc comment", &status) > 0) printf("ffpkyc status = %d\n", status); if (ffpkym(fptr, "key_pkym", ondkey, 14, "fxpkym comment", &status) > 0) printf("ffpkym status = %d\n", status); if (ffpkfc(fptr, "key_pkfc", onekey, 6, "fxpkfc comment", &status) > 0) printf("ffpkfc status = %d\n", status); if (ffpkfm(fptr, "key_pkfm", ondkey, 14, "fxpkfm comment", &status) > 0) printf("ffpkfm status = %d\n", status); if (ffpkls(fptr, "key_pkls", "This is a very long string value that is continued over more than one keyword.", "fxpkls comment", &status) > 0) printf("ffpkls status = %d\n", status); if (ffplsw(fptr, &status) > 0 ) printf("ffplsw status = %d\n", status); if (ffpkyt(fptr, "key_pkyt", otint, otfrac, "fxpkyt comment", &status) > 0) printf("ffpkyt status = %d\n", status); if (ffpcom(fptr, " This keyword was written by fxpcom.", &status) > 0) printf("ffpcom status = %d\n", status); if (ffphis(fptr, " This keyword written by fxphis (w/ 2 leading spaces).", &status) > 0) printf("ffphis status = %d\n", status); if (ffpdat(fptr, &status) > 0) { printf("ffpdat status = %d\n", status); goto errstatus; } /* ############################### # write arrays of keywords # ############################### */ nkeys = 3; comms[0] = comm; /* use the inskey array of pointers for the comments */ strcpy(comm, "fxpkns comment&"); if (ffpkns(fptr, "ky_pkns", 1, nkeys, onskey, comms, &status) > 0) printf("ffpkns status = %d\n", status); strcpy(comm, "fxpknl comment&"); if (ffpknl(fptr, "ky_pknl", 1, nkeys, onlkey, comms, &status) > 0) printf("ffpknl status = %d\n", status); strcpy(comm, "fxpknj comment&"); if (ffpknj(fptr, "ky_pknj", 1, nkeys, onjkey, comms, &status) > 0) printf("ffpknj status = %d\n", status); strcpy(comm, "fxpknf comment&"); if (ffpknf(fptr, "ky_pknf", 1, nkeys, onfkey, 5, comms, &status) > 0) printf("ffpknf status = %d\n", status); strcpy(comm, "fxpkne comment&"); if (ffpkne(fptr, "ky_pkne", 1, nkeys, onekey, 6, comms, &status) > 0) printf("ffpkne status = %d\n", status); strcpy(comm, "fxpkng comment&"); if (ffpkng(fptr, "ky_pkng", 1, nkeys, ongkey, 13, comms, &status) > 0) printf("ffpkng status = %d\n", status); strcpy(comm, "fxpknd comment&"); if (ffpknd(fptr, "ky_pknd", 1, nkeys, ondkey, 14, comms, &status) > 0) { printf("ffpknd status = %d\n", status); goto errstatus; } /* ############################ # write generic keywords # ############################ */ strcpy(oskey, "1"); if (ffpky(fptr, TSTRING, "tstring", oskey, "tstring comment", &status) > 0) printf("ffpky status = %d\n", status); olkey = TLOGICAL; if (ffpky(fptr, TLOGICAL, "tlogical", &olkey, "tlogical comment", &status) > 0) printf("ffpky status = %d\n", status); cval = TBYTE; if (ffpky(fptr, TBYTE, "tbyte", &cval, "tbyte comment", &status) > 0) printf("ffpky status = %d\n", status); oshtkey = TSHORT; if (ffpky(fptr, TSHORT, "tshort", &oshtkey, "tshort comment", &status) > 0) printf("ffpky status = %d\n", status); olkey = TINT; if (ffpky(fptr, TINT, "tint", &olkey, "tint comment", &status) > 0) printf("ffpky status = %d\n", status); ojkey = TLONG; if (ffpky(fptr, TLONG, "tlong", &ojkey, "tlong comment", &status) > 0) printf("ffpky status = %d\n", status); oekey = TFLOAT; if (ffpky(fptr, TFLOAT, "tfloat", &oekey, "tfloat comment", &status) > 0) printf("ffpky status = %d\n", status); odkey = TDOUBLE; if (ffpky(fptr, TDOUBLE, "tdouble", &odkey, "tdouble comment", &status) > 0) printf("ffpky status = %d\n", status); /* ############################ # write data # ############################ */ /* define the null value (must do this before writing any data) */ if (ffpkyj(fptr, "BLANK", -99, "value to use for undefined pixels", &status) > 0) printf("BLANK keyword status = %d\n", status); /* initialize arrays of values to write to primary array */ for (ii = 0; ii < npixels; ii++) { boutarray[ii] = (unsigned char) (ii + 1); ioutarray[ii] = (short) (ii + 1); joutarray[ii] = ii + 1; eoutarray[ii] = (float) (ii + 1); doutarray[ii] = ii + 1; } /* write a few pixels with each datatype */ /* set the last value in each group of 4 as undefined */ /* ffpprb(fptr, 1, 1, 2, &boutarray[0], &status); ffppri(fptr, 1, 5, 2, &ioutarray[4], &status); ffpprj(fptr, 1, 9, 2, &joutarray[8], &status); ffppre(fptr, 1, 13, 2, &eoutarray[12], &status); ffpprd(fptr, 1, 17, 2, &doutarray[16], &status); */ /* test the newer ffpx routine, instead of the older ffppr_ routines */ firstpix[0]=1; firstpix[1]=1; ffppx(fptr, TBYTE, firstpix, 2, &boutarray[0], &status); firstpix[0]=5; ffppx(fptr, TSHORT, firstpix, 2, &ioutarray[4], &status); firstpix[0]=9; ffppx(fptr, TLONG, firstpix, 2, &joutarray[8], &status); firstpix[0]=3; firstpix[1]=2; ffppx(fptr, TFLOAT, firstpix, 2, &eoutarray[12], &status); firstpix[0]=7; ffppx(fptr, TDOUBLE, firstpix, 2, &doutarray[16], &status); /* ffppnb(fptr, 1, 3, 2, &boutarray[2], 4, &status); ffppni(fptr, 1, 7, 2, &ioutarray[6], 8, &status); ffppnj(fptr, 1, 11, 2, &joutarray[10], 12, &status); ffppne(fptr, 1, 15, 2, &eoutarray[14], 16., &status); ffppnd(fptr, 1, 19, 2, &doutarray[18], 20., &status); */ firstpix[0]=3; firstpix[1]=1; bnul = 4; ffppxn(fptr, TBYTE, firstpix, 2, &boutarray[2], &bnul, &status); firstpix[0]=7; inul = 8; ffppxn(fptr, TSHORT, firstpix, 2, &ioutarray[6], &inul, &status); firstpix[0]=1; firstpix[1]=2; jnul = 12; ffppxn(fptr, TLONG, firstpix, 2, &joutarray[10], &jnul, &status); firstpix[0]=5; enul = 16.; ffppxn(fptr, TFLOAT, firstpix, 2, &eoutarray[14], &enul, &status); firstpix[0]=9; dnul = 20.; ffppxn(fptr, TDOUBLE, firstpix, 2, &doutarray[18], &dnul, &status); ffppru(fptr, 1, 1, 1, &status); if (status > 0) { printf("ffppnx status = %d\n", status); goto errstatus; } ffflus(fptr, &status); /* flush all data to the disk file */ printf("ffflus status = %d\n", status); printf("HDU number = %d\n", ffghdn(fptr, &hdunum)); /* ############################ # read data # ############################ */ /* read back the data, setting null values = 99 */ printf("\nValues read back from primary array (99 = null pixel)\n"); printf("The 1st, and every 4th pixel should be undefined:\n"); anynull = 0; ffgpvb(fptr, 1, 1, 10, 99, binarray, &anynull, &status); ffgpvb(fptr, 1, 11, 10, 99, &binarray[10], &anynull, &status); for (ii = 0; ii < npixels; ii++) printf(" %2d", binarray[ii]); printf(" %d (ffgpvb)\n", anynull); ffgpvi(fptr, 1, 1, npixels, 99, iinarray, &anynull, &status); for (ii = 0; ii < npixels; ii++) printf(" %2d", iinarray[ii]); printf(" %d (ffgpvi)\n", anynull); ffgpvj(fptr, 1, 1, npixels, 99, jinarray, &anynull, &status); for (ii = 0; ii < npixels; ii++) printf(" %2ld", jinarray[ii]); printf(" %d (ffgpvj)\n", anynull); ffgpve(fptr, 1, 1, npixels, 99., einarray, &anynull, &status); for (ii = 0; ii < npixels; ii++) printf(" %2.0f", einarray[ii]); printf(" %d (ffgpve)\n", anynull); ffgpvd(fptr, 1, 1, 10, 99., dinarray, &anynull, &status); ffgpvd(fptr, 1, 11, 10, 99., &dinarray[10], &anynull, &status); for (ii = 0; ii < npixels; ii++) printf(" %2.0f", dinarray[ii]); printf(" %d (ffgpvd)\n", anynull); if (status > 0) { printf("ERROR: ffgpv_ status = %d\n", status); goto errstatus; } if (anynull == 0) printf("ERROR: ffgpv_ did not detect null values\n"); /* reset the output null value to the expected input value */ for (ii = 3; ii < npixels; ii += 4) { boutarray[ii] = 99; ioutarray[ii] = 99; joutarray[ii] = 99; eoutarray[ii] = 99.; doutarray[ii] = 99.; } ii = 0; boutarray[ii] = 99; ioutarray[ii] = 99; joutarray[ii] = 99; eoutarray[ii] = 99.; doutarray[ii] = 99.; /* compare the output with the input; flag any differences */ for (ii = 0; ii < npixels; ii++) { if (boutarray[ii] != binarray[ii]) printf("bout != bin = %u %u \n", boutarray[ii], binarray[ii]); if (ioutarray[ii] != iinarray[ii]) printf("iout != iin = %d %d \n", ioutarray[ii], iinarray[ii]); if (joutarray[ii] != jinarray[ii]) printf("jout != jin = %ld %ld \n", joutarray[ii], jinarray[ii]); if (eoutarray[ii] != einarray[ii]) printf("eout != ein = %f %f \n", eoutarray[ii], einarray[ii]); if (doutarray[ii] != dinarray[ii]) printf("dout != din = %f %f \n", doutarray[ii], dinarray[ii]); } for (ii = 0; ii < npixels; ii++) { binarray[ii] = 0; iinarray[ii] = 0; jinarray[ii] = 0; einarray[ii] = 0.; dinarray[ii] = 0.; } anynull = 0; ffgpfb(fptr, 1, 1, 10, binarray, larray, &anynull, &status); ffgpfb(fptr, 1, 11, 10, &binarray[10], &larray[10], &anynull, &status); for (ii = 0; ii < npixels; ii++) if (larray[ii]) printf(" *"); else printf(" %2d", binarray[ii]); printf(" %d (ffgpfb)\n", anynull); ffgpfi(fptr, 1, 1, npixels, iinarray, larray, &anynull, &status); for (ii = 0; ii < npixels; ii++) if (larray[ii]) printf(" *"); else printf(" %2d", iinarray[ii]); printf(" %d (ffgpfi)\n", anynull); ffgpfj(fptr, 1, 1, npixels, jinarray, larray, &anynull, &status); for (ii = 0; ii < npixels; ii++) if (larray[ii]) printf(" *"); else printf(" %2ld", jinarray[ii]); printf(" %d (ffgpfj)\n", anynull); ffgpfe(fptr, 1, 1, npixels, einarray, larray, &anynull, &status); for (ii = 0; ii < npixels; ii++) if (larray[ii]) printf(" *"); else printf(" %2.0f", einarray[ii]); printf(" %d (ffgpfe)\n", anynull); ffgpfd(fptr, 1, 1, 10, dinarray, larray, &anynull, &status); ffgpfd(fptr, 1, 11, 10, &dinarray[10], &larray[10], &anynull, &status); for (ii = 0; ii < npixels; ii++) if (larray[ii]) printf(" *"); else printf(" %2.0f", dinarray[ii]); printf(" %d (ffgpfd)\n", anynull); if (status > 0) { printf("ERROR: ffgpf_ status = %d\n", status); goto errstatus; } if (anynull == 0) printf("ERROR: ffgpf_ did not detect null values\n"); /* ########################################## # close and reopen file multiple times # ########################################## */ for (ii = 0; ii < 10; ii++) { if (ffclos(fptr, &status) > 0) { printf("ERROR in ftclos (1) = %d", status); goto errstatus; } if (fits_open_file(&fptr, filename, READWRITE, &status) > 0) { printf("ERROR: ffopen open file status = %d\n", status); goto errstatus; } } printf("\nClosed then reopened the FITS file 10 times.\n"); printf("HDU number = %d\n", ffghdn(fptr, &hdunum)); filename[0] = '\0'; ffflnm(fptr, filename, &status); ffflmd(fptr, &filemode, &status); printf("Name of file = %s, I/O mode = %d\n", filename, filemode); /* ############################ # read single keywords # ############################ */ simple = 0; bitpix = 0; naxis = 0; naxes[0] = 0; naxes[1] = 0; pcount = -99; gcount = -99; extend = -99; printf("\nRead back keywords:\n"); ffghpr(fptr, 99, &simple, &bitpix, &naxis, naxes, &pcount, &gcount, &extend, &status); printf("simple = %d, bitpix = %d, naxis = %d, naxes = (%ld, %ld)\n", simple, bitpix, naxis, naxes[0], naxes[1]); printf(" pcount = %ld, gcount = %ld, extend = %d\n", pcount, gcount, extend); ffgrec(fptr, 9, card, &status); printf("%s\n", card); if (strncmp(card, "KEY_PREC= 'This", 15) ) printf("ERROR in ffgrec\n"); ffgkyn(fptr, 9, keyword, value, comment, &status); printf("%s : %s : %s :\n",keyword, value, comment); if (strncmp(keyword, "KEY_PREC", 8) ) printf("ERROR in ffgkyn: %s\n", keyword); ffgcrd(fptr, keyword, card, &status); printf("%s\n", card); if (strncmp(keyword, card, 8) ) printf("ERROR in ffgcrd: %s\n", keyword); ffgkey(fptr, "KY_PKNS1", value, comment, &status); printf("KY_PKNS1 : %s : %s :\n", value, comment); if (strncmp(value, "'first string'", 14) ) printf("ERROR in ffgkey: %s\n", value); ffgkys(fptr, "key_pkys", iskey, comment, &status); printf("KEY_PKYS %s %s %d\n", iskey, comment, status); ffgkyl(fptr, "key_pkyl", &ilkey, comment, &status); printf("KEY_PKYL %d %s %d\n", ilkey, comment, status); ffgkyj(fptr, "KEY_PKYJ", &ijkey, comment, &status); printf("KEY_PKYJ %ld %s %d\n",ijkey, comment, status); ffgkye(fptr, "KEY_PKYJ", &iekey, comment, &status); printf("KEY_PKYJ %f %s %d\n",iekey, comment, status); ffgkyd(fptr, "KEY_PKYJ", &idkey, comment, &status); printf("KEY_PKYJ %f %s %d\n",idkey, comment, status); if (ijkey != 11 || iekey != 11. || idkey != 11.) printf("ERROR in ffgky[jed]: %ld, %f, %f\n",ijkey, iekey, idkey); iskey[0] = '\0'; ffgky(fptr, TSTRING, "key_pkys", iskey, comment, &status); printf("KEY_PKY S %s %s %d\n", iskey, comment, status); ilkey = 0; ffgky(fptr, TLOGICAL, "key_pkyl", &ilkey, comment, &status); printf("KEY_PKY L %d %s %d\n", ilkey, comment, status); ffgky(fptr, TBYTE, "KEY_PKYJ", &cval, comment, &status); printf("KEY_PKY BYTE %d %s %d\n",cval, comment, status); ffgky(fptr, TSHORT, "KEY_PKYJ", &ishtkey, comment, &status); printf("KEY_PKY SHORT %d %s %d\n",ishtkey, comment, status); ffgky(fptr, TINT, "KEY_PKYJ", &ilkey, comment, &status); printf("KEY_PKY INT %d %s %d\n",ilkey, comment, status); ijkey = 0; ffgky(fptr, TLONG, "KEY_PKYJ", &ijkey, comment, &status); printf("KEY_PKY J %ld %s %d\n",ijkey, comment, status); iekey = 0; ffgky(fptr, TFLOAT, "KEY_PKYE", &iekey, comment, &status); printf("KEY_PKY E %f %s %d\n",iekey, comment, status); idkey = 0; ffgky(fptr, TDOUBLE, "KEY_PKYD", &idkey, comment, &status); printf("KEY_PKY D %f %s %d\n",idkey, comment, status); ffgkyd(fptr, "KEY_PKYF", &idkey, comment, &status); printf("KEY_PKYF %f %s %d\n",idkey, comment, status); ffgkyd(fptr, "KEY_PKYE", &idkey, comment, &status); printf("KEY_PKYE %f %s %d\n",idkey, comment, status); ffgkyd(fptr, "KEY_PKYG", &idkey, comment, &status); printf("KEY_PKYG %.14f %s %d\n",idkey, comment, status); ffgkyd(fptr, "KEY_PKYD", &idkey, comment, &status); printf("KEY_PKYD %.14f %s %d\n",idkey, comment, status); ffgkyc(fptr, "KEY_PKYC", inekey, comment, &status); printf("KEY_PKYC %f %f %s %d\n",inekey[0], inekey[1], comment, status); ffgkyc(fptr, "KEY_PKFC", inekey, comment, &status); printf("KEY_PKFC %f %f %s %d\n",inekey[0], inekey[1], comment, status); ffgkym(fptr, "KEY_PKYM", indkey, comment, &status); printf("KEY_PKYM %f %f %s %d\n",indkey[0], indkey[1], comment, status); ffgkym(fptr, "KEY_PKFM", indkey, comment, &status); printf("KEY_PKFM %f %f %s %d\n",indkey[0], indkey[1], comment, status); ffgkyt(fptr, "KEY_PKYT", &ijkey, &idkey, comment, &status); printf("KEY_PKYT %ld %.14f %s %d\n",ijkey, idkey, comment, status); ffpunt(fptr, "KEY_PKYJ", "km/s/Mpc", &status); ijkey = 0; ffgky(fptr, TLONG, "KEY_PKYJ", &ijkey, comment, &status); printf("KEY_PKY J %ld %s %d\n",ijkey, comment, status); ffgunt(fptr,"KEY_PKYJ", comment, &status); printf("KEY_PKY units = %s\n",comment); ffpunt(fptr, "KEY_PKYJ", "", &status); ijkey = 0; ffgky(fptr, TLONG, "KEY_PKYJ", &ijkey, comment, &status); printf("KEY_PKY J %ld %s %d\n",ijkey, comment, status); ffgunt(fptr,"KEY_PKYJ", comment, &status); printf("KEY_PKY units = %s\n",comment); ffpunt(fptr, "KEY_PKYJ", "feet/second/second", &status); ijkey = 0; ffgky(fptr, TLONG, "KEY_PKYJ", &ijkey, comment, &status); printf("KEY_PKY J %ld %s %d\n",ijkey, comment, status); ffgunt(fptr,"KEY_PKYJ", comment, &status); printf("KEY_PKY units = %s\n",comment); ffgkls(fptr, "key_pkls", &lsptr, comment, &status); printf("KEY_PKLS long string value = \n%s\n", lsptr); /* free the memory for the long string value */ fits_free_memory(lsptr, &status); /* get size and position in header */ ffghps(fptr, &existkeys, &keynum, &status); printf("header contains %d keywords; located at keyword %d \n",existkeys, keynum); /* ############################ # read array keywords # ############################ */ ffgkns(fptr, "ky_pkns", 1, 3, inskey, &nfound, &status); printf("ffgkns: %s, %s, %s\n", inskey[0], inskey[1], inskey[2]); if (nfound != 3 || status > 0) printf("\nERROR in ffgkns %d, %d\n", nfound, status); ffgknl(fptr, "ky_pknl", 1, 3, inlkey, &nfound, &status); printf("ffgknl: %d, %d, %d\n", inlkey[0], inlkey[1], inlkey[2]); if (nfound != 3 || status > 0) printf("\nERROR in ffgknl %d, %d\n", nfound, status); ffgknj(fptr, "ky_pknj", 1, 3, injkey, &nfound, &status); printf("ffgknj: %ld, %ld, %ld\n", injkey[0], injkey[1], injkey[2]); if (nfound != 3 || status > 0) printf("\nERROR in ffgknj %d, %d\n", nfound, status); ffgkne(fptr, "ky_pkne", 1, 3, inekey, &nfound, &status); printf("ffgkne: %f, %f, %f\n", inekey[0], inekey[1], inekey[2]); if (nfound != 3 || status > 0) printf("\nERROR in ffgkne %d, %d\n", nfound, status); ffgknd(fptr, "ky_pknd", 1, 3, indkey, &nfound, &status); printf("ffgknd: %f, %f, %f\n", indkey[0], indkey[1], indkey[2]); if (nfound != 3 || status > 0) printf("\nERROR in ffgknd %d, %d\n", nfound, status); /* get position of HISTORY keyword for subsequent deletes and inserts */ ffgcrd(fptr, "HISTORY", card, &status); ffghps(fptr, &existkeys, &keynum, &status); keynum -= 2; printf("\nBefore deleting the HISTORY and DATE keywords...\n"); for (ii = keynum; ii <= keynum + 3; ii++) { ffgrec(fptr, ii, card, &status); printf("%.8s\n", card); /* don't print date value, so that */ } /* the output will always be the same */ /* ############################ # delete keywords # ############################ */ ffdrec(fptr, keynum + 1, &status); ffdkey(fptr, "DATE", &status); printf("\nAfter deleting the keywords...\n"); for (ii = keynum; ii <= keynum + 1; ii++) { ffgrec(fptr, ii, card, &status); printf("%s\n", card); } if (status > 0) printf("\nERROR deleting keywords\n"); /* ############################ # insert keywords # ############################ */ keynum += 4; ffirec(fptr, keynum - 3, "KY_IREC = 'This keyword inserted by fxirec'", &status); ffikys(fptr, "KY_IKYS", "insert_value_string", "ikys comment", &status); ffikyj(fptr, "KY_IKYJ", 49, "ikyj comment", &status); ffikyl(fptr, "KY_IKYL", 1, "ikyl comment", &status); ffikye(fptr, "KY_IKYE", 12.3456f, 4, "ikye comment", &status); ffikyd(fptr, "KY_IKYD", 12.345678901234567, 14, "ikyd comment", &status); ffikyf(fptr, "KY_IKYF", 12.3456f, 4, "ikyf comment", &status); ffikyg(fptr, "KY_IKYG", 12.345678901234567, 13, "ikyg comment", &status); printf("\nAfter inserting the keywords...\n"); for (ii = keynum - 4; ii <= keynum + 5; ii++) { ffgrec(fptr, ii, card, &status); printf("%s\n", card); } if (status > 0) printf("\nERROR inserting keywords\n"); /* ############################ # modify keywords # ############################ */ ffmrec(fptr, keynum - 4, "COMMENT This keyword was modified by fxmrec", &status); ffmcrd(fptr, "KY_IREC", "KY_MREC = 'This keyword was modified by fxmcrd'", &status); ffmnam(fptr, "KY_IKYS", "NEWIKYS", &status); ffmcom(fptr, "KY_IKYJ","This is a modified comment", &status); ffmkyj(fptr, "KY_IKYJ", 50, "&", &status); ffmkyl(fptr, "KY_IKYL", 0, "&", &status); ffmkys(fptr, "NEWIKYS", "modified_string", "&", &status); ffmkye(fptr, "KY_IKYE", -12.3456f, 4, "&", &status); ffmkyd(fptr, "KY_IKYD", -12.345678901234567, 14, "modified comment", &status); ffmkyf(fptr, "KY_IKYF", -12.3456f, 4, "&", &status); ffmkyg(fptr, "KY_IKYG", -12.345678901234567, 13, "&", &status); printf("\nAfter modifying the keywords...\n"); for (ii = keynum - 4; ii <= keynum + 5; ii++) { ffgrec(fptr, ii, card, &status); printf("%s\n", card); } if (status > 0) printf("\nERROR modifying keywords\n"); /* ############################ # update keywords # ############################ */ ffucrd(fptr, "KY_MREC", "KY_UCRD = 'This keyword was updated by fxucrd'", &status); ffukyj(fptr, "KY_IKYJ", 51, "&", &status); ffukyl(fptr, "KY_IKYL", 1, "&", &status); ffukys(fptr, "NEWIKYS", "updated_string", "&", &status); ffukye(fptr, "KY_IKYE", -13.3456f, 4, "&", &status); ffukyd(fptr, "KY_IKYD", -13.345678901234567, 14, "modified comment", &status); ffukyf(fptr, "KY_IKYF", -13.3456f, 4, "&", &status); ffukyg(fptr, "KY_IKYG", -13.345678901234567, 13, "&", &status); printf("\nAfter updating the keywords...\n"); for (ii = keynum - 4; ii <= keynum + 5; ii++) { ffgrec(fptr, ii, card, &status); printf("%s\n", card); } if (status > 0) printf("\nERROR modifying keywords\n"); /* move to top of header and find keywords using wild cards */ ffgrec(fptr, 0, card, &status); printf("\nKeywords found using wildcard search (should be 13)...\n"); nfound = 0; while (!ffgnxk(fptr,inclist, 2, exclist, 2, card, &status)) { nfound++; printf("%s\n", card); } if (nfound != 13) { printf("\nERROR reading keywords using wildcards (ffgnxk)\n"); goto errstatus; } status = 0; /* ############################ # copy index keyword # ############################ */ ffcpky(fptr, fptr, 1, 4, "KY_PKNE", &status); ffgkne(fptr, "ky_pkne", 2, 4, inekey, &nfound, &status); printf("\nCopied keyword: ffgkne: %f, %f, %f\n", inekey[0], inekey[1], inekey[2]); if (status > 0) { printf("\nERROR in ffgkne %d, %d\n", nfound, status); goto errstatus; } /* ###################################### # modify header using template file # ###################################### */ if (ffpktp(fptr, templt, &status)) { printf("\nERROR returned by ffpktp:\n"); printf("Could not open or process the file 'testprog.tpt'.\n"); printf(" This file is included with the CFITSIO distribution\n"); printf(" and should be copied into the current directory\n"); printf(" before running the testprog program.\n"); status = 0; } printf("Updated header using template file (ffpktp)\n"); /* ############################ # create binary table # ############################ */ strcpy(tform[0], "15A"); strcpy(tform[1], "1L"); strcpy(tform[2], "16X"); strcpy(tform[3], "1B"); strcpy(tform[4], "1I"); strcpy(tform[5], "1J"); strcpy(tform[6], "1E"); strcpy(tform[7], "1D"); strcpy(tform[8], "1C"); strcpy(tform[9], "1M"); strcpy(ttype[0], "Avalue"); strcpy(ttype[1], "Lvalue"); strcpy(ttype[2], "Xvalue"); strcpy(ttype[3], "Bvalue"); strcpy(ttype[4], "Ivalue"); strcpy(ttype[5], "Jvalue"); strcpy(ttype[6], "Evalue"); strcpy(ttype[7], "Dvalue"); strcpy(ttype[8], "Cvalue"); strcpy(ttype[9], "Mvalue"); strcpy(tunit[0], ""); strcpy(tunit[1], "m**2"); strcpy(tunit[2], "cm"); strcpy(tunit[3], "erg/s"); strcpy(tunit[4], "km/s"); strcpy(tunit[5], ""); strcpy(tunit[6], ""); strcpy(tunit[7], ""); strcpy(tunit[8], ""); strcpy(tunit[9], ""); nrows = 21; tfields = 10; pcount = 0; /* ffcrtb(fptr, BINARY_TBL, nrows, tfields, ttype, tform, tunit, binname, &status); */ ffibin(fptr, nrows, tfields, ttype, tform, tunit, binname, 0L, &status); printf("\nffibin status = %d\n", status); printf("HDU number = %d\n", ffghdn(fptr, &hdunum)); /* get size and position in header, and reserve space for more keywords */ ffghps(fptr, &existkeys, &keynum, &status); printf("header contains %d keywords; located at keyword %d \n",existkeys, keynum); morekeys = 40; ffhdef(fptr, morekeys, &status); ffghsp(fptr, &existkeys, &morekeys, &status); printf("header contains %d keywords with room for %d more\n",existkeys, morekeys); fftnul(fptr, 4, 99, &status); /* define null value for int cols */ fftnul(fptr, 5, 99, &status); fftnul(fptr, 6, 99, &status); extvers = 1; ffpkyj(fptr, "EXTVER", extvers, "extension version number", &status); ffpkyj(fptr, "TNULL4", 99, "value for undefined pixels", &status); ffpkyj(fptr, "TNULL5", 99, "value for undefined pixels", &status); ffpkyj(fptr, "TNULL6", 99, "value for undefined pixels", &status); naxis = 3; naxes[0] = 1; naxes[1] = 2; naxes[2] = 8; ffptdm(fptr, 3, naxis, naxes, &status); naxis = 0; naxes[0] = 0; naxes[1] = 0; naxes[2] = 0; ffgtdm(fptr, 3, 3, &naxis, naxes, &status); ffgkys(fptr, "TDIM3", iskey, comment, &status); printf("TDIM3 = %s, %d, %ld, %ld, %ld\n", iskey, naxis, naxes[0], naxes[1], naxes[2]); ffrdef(fptr, &status); /* force header to be scanned (not required) */ /* ############################ # write data to columns # ############################ */ /* initialize arrays of values to write to table */ signval = -1; for (ii = 0; ii < 21; ii++) { signval *= -1; boutarray[ii] = (unsigned char) (ii + 1); ioutarray[ii] = (short) ((ii + 1) * signval); joutarray[ii] = (ii + 1) * signval; koutarray[ii] = (ii + 1) * signval; eoutarray[ii] = (float) ((ii + 1) * signval); doutarray[ii] = (ii + 1) * signval; } ffpcls(fptr, 1, 1, 1, 3, onskey, &status); /* write string values */ ffpclu(fptr, 1, 4, 1, 1, &status); /* write null value */ larray[0] = 0; larray[1] = 1; larray[2] = 0; larray[3] = 0; larray[4] = 1; larray[5] = 1; larray[6] = 0; larray[7] = 0; larray[8] = 0; larray[9] = 1; larray[10] = 1; larray[11] = 1; larray[12] = 0; larray[13] = 0; larray[14] = 0; larray[15] = 0; larray[16] = 1; larray[17] = 1; larray[18] = 1; larray[19] = 1; larray[20] = 0; larray[21] = 0; larray[22] = 0; larray[23] = 0; larray[24] = 0; larray[25] = 1; larray[26] = 1; larray[27] = 1; larray[28] = 1; larray[29] = 1; larray[30] = 0; larray[31] = 0; larray[32] = 0; larray[33] = 0; larray[34] = 0; larray[35] = 0; ffpclx(fptr, 3, 1, 1, 36, larray, &status); /*write bits*/ for (ii = 4; ii < 9; ii++) /* loop over cols 4 - 8 */ { ffpclb(fptr, ii, 1, 1, 2, boutarray, &status); if (status == NUM_OVERFLOW) status = 0; ffpcli(fptr, ii, 3, 1, 2, &ioutarray[2], &status); if (status == NUM_OVERFLOW) status = 0; ffpclk(fptr, ii, 5, 1, 2, &koutarray[4], &status); if (status == NUM_OVERFLOW) status = 0; ffpcle(fptr, ii, 7, 1, 2, &eoutarray[6], &status); if (status == NUM_OVERFLOW) status = 0; ffpcld(fptr, ii, 9, 1, 2, &doutarray[8], &status); if (status == NUM_OVERFLOW) status = 0; ffpclu(fptr, ii, 11, 1, 1, &status); /* write null value */ } ffpclc(fptr, 9, 1, 1, 10, eoutarray, &status); ffpclm(fptr, 10, 1, 1, 10, doutarray, &status); for (ii = 4; ii < 9; ii++) /* loop over cols 4 - 8 */ { ffpcnb(fptr, ii, 12, 1, 2, &boutarray[11], 13, &status); if (status == NUM_OVERFLOW) status = 0; ffpcni(fptr, ii, 14, 1, 2, &ioutarray[13], 15, &status); if (status == NUM_OVERFLOW) status = 0; ffpcnk(fptr, ii, 16, 1, 2, &koutarray[15], 17, &status); if (status == NUM_OVERFLOW) status = 0; ffpcne(fptr, ii, 18, 1, 2, &eoutarray[17], 19., &status); if (status == NUM_OVERFLOW) status = 0; ffpcnd(fptr, ii, 20, 1, 2, &doutarray[19], 21., &status); if (status == NUM_OVERFLOW) status = 0; } ffpcll(fptr, 2, 1, 1, 21, larray, &status); /*write logicals*/ ffpclu(fptr, 2, 11, 1, 1, &status); /* write null value */ printf("ffpcl_ status = %d\n", status); /* ######################################### # get information about the columns # ######################################### */ printf("\nFind the column numbers; a returned status value of 237 is"); printf("\nexpected and indicates that more than one column name matches"); printf("\nthe input column name template. Status = 219 indicates that"); printf("\nthere was no matching column name."); ffgcno(fptr, 0, "Xvalue", &colnum, &status); printf("\nColumn Xvalue is number %d; status = %d.\n", colnum, status); while (status != COL_NOT_FOUND) { ffgcnn(fptr, 1, "*ue", colname, &colnum, &status); printf("Column %s is number %d; status = %d.\n", colname, colnum, status); } status = 0; printf("\nInformation about each column:\n"); for (ii = 0; ii < tfields; ii++) { ffgtcl(fptr, ii + 1, &typecode, &repeat, &width, &status); printf("%4s %3d %2ld %2ld", tform[ii], typecode, repeat, width); ffgbcl(fptr, ii + 1, ttype[0], tunit[0], cvalstr, &repeat, &scale, &zero, &jnulval, tdisp, &status); printf(" %s, %s, %c, %ld, %f, %f, %ld, %s.\n", ttype[0], tunit[0], cvalstr[0], repeat, scale, zero, jnulval, tdisp); } printf("\n"); /* ############################################### # insert ASCII table before the binary table # ############################################### */ if (ffmrhd(fptr, -1, &hdutype, &status) > 0) goto errstatus; strcpy(tform[0], "A15"); strcpy(tform[1], "I10"); strcpy(tform[2], "F14.6"); strcpy(tform[3], "E12.5"); strcpy(tform[4], "D21.14"); strcpy(ttype[0], "Name"); strcpy(ttype[1], "Ivalue"); strcpy(ttype[2], "Fvalue"); strcpy(ttype[3], "Evalue"); strcpy(ttype[4], "Dvalue"); strcpy(tunit[0], ""); strcpy(tunit[1], "m**2"); strcpy(tunit[2], "cm"); strcpy(tunit[3], "erg/s"); strcpy(tunit[4], "km/s"); rowlen = 76; nrows = 11; tfields = 5; ffitab(fptr, rowlen, nrows, tfields, ttype, tbcol, tform, tunit, tblname, &status); printf("ffitab status = %d\n", status); printf("HDU number = %d\n", ffghdn(fptr, &hdunum)); ffsnul(fptr, 1, "null1", &status); /* define null value for int cols */ ffsnul(fptr, 2, "null2", &status); ffsnul(fptr, 3, "null3", &status); ffsnul(fptr, 4, "null4", &status); ffsnul(fptr, 5, "null5", &status); extvers = 2; ffpkyj(fptr, "EXTVER", extvers, "extension version number", &status); ffpkys(fptr, "TNULL1", "null1", "value for undefined pixels", &status); ffpkys(fptr, "TNULL2", "null2", "value for undefined pixels", &status); ffpkys(fptr, "TNULL3", "null3", "value for undefined pixels", &status); ffpkys(fptr, "TNULL4", "null4", "value for undefined pixels", &status); ffpkys(fptr, "TNULL5", "null5", "value for undefined pixels", &status); if (status > 0) goto errstatus; /* ############################ # write data to columns # ############################ */ /* initialize arrays of values to write to table */ for (ii = 0; ii < 21; ii++) { boutarray[ii] = (unsigned char) (ii + 1); ioutarray[ii] = (short) (ii + 1); joutarray[ii] = ii + 1; eoutarray[ii] = (float) (ii + 1); doutarray[ii] = ii + 1; } ffpcls(fptr, 1, 1, 1, 3, onskey, &status); /* write string values */ ffpclu(fptr, 1, 4, 1, 1, &status); /* write null value */ for (ii = 2; ii < 6; ii++) /* loop over cols 2 - 5 */ { ffpclb(fptr, ii, 1, 1, 2, boutarray, &status); /* char array */ if (status == NUM_OVERFLOW) status = 0; ffpcli(fptr, ii, 3, 1, 2, &ioutarray[2], &status); /* short array */ if (status == NUM_OVERFLOW) status = 0; ffpclj(fptr, ii, 5, 1, 2, &joutarray[4], &status); /* long array */ if (status == NUM_OVERFLOW) status = 0; ffpcle(fptr, ii, 7, 1, 2, &eoutarray[6], &status); /* float array */ if (status == NUM_OVERFLOW) status = 0; ffpcld(fptr, ii, 9, 1, 2, &doutarray[8], &status); /* double array */ if (status == NUM_OVERFLOW) status = 0; ffpclu(fptr, ii, 11, 1, 1, &status); /* write null value */ } printf("ffpcl_ status = %d\n", status); /* ################################ # read data from ASCII table # ################################ */ ffghtb(fptr, 99, &rowlen, &nrows, &tfields, ttype, tbcol, tform, tunit, tblname, &status); printf("\nASCII table: rowlen, nrows, tfields, extname: %ld %ld %d %s\n", rowlen, nrows, tfields, tblname); for (ii = 0; ii < tfields; ii++) printf("%8s %3ld %8s %8s \n", ttype[ii], tbcol[ii], tform[ii], tunit[ii]); nrows = 11; ffgcvs(fptr, 1, 1, 1, nrows, "UNDEFINED", inskey, &anynull, &status); ffgcvb(fptr, 2, 1, 1, nrows, 99, binarray, &anynull, &status); ffgcvi(fptr, 2, 1, 1, nrows, 99, iinarray, &anynull, &status); ffgcvj(fptr, 3, 1, 1, nrows, 99, jinarray, &anynull, &status); ffgcve(fptr, 4, 1, 1, nrows, 99., einarray, &anynull, &status); ffgcvd(fptr, 5, 1, 1, nrows, 99., dinarray, &anynull, &status); printf("\nData values read from ASCII table:\n"); for (ii = 0; ii < nrows; ii++) { printf("%15s %2d %2d %2ld %4.1f %4.1f\n", inskey[ii], binarray[ii], iinarray[ii], jinarray[ii], einarray[ii], dinarray[ii]); } ffgtbb(fptr, 1, 20, 78, uchars, &status); uchars[78] = '\0'; printf("\n%s\n", uchars); ffptbb(fptr, 1, 20, 78, uchars, &status); /* ######################################### # get information about the columns # ######################################### */ ffgcno(fptr, 0, "name", &colnum, &status); printf("\nColumn name is number %d; status = %d.\n", colnum, status); while (status != COL_NOT_FOUND) { ffgcnn(fptr, 1, "*ue", colname, &colnum, &status); printf("Column %s is number %d; status = %d.\n", colname, colnum, status); } status = 0; for (ii = 0; ii < tfields; ii++) { ffgtcl(fptr, ii + 1, &typecode, &repeat, &width, &status); printf("%4s %3d %2ld %2ld", tform[ii], typecode, repeat, width); ffgacl(fptr, ii + 1, ttype[0], tbcol, tunit[0], tform[0], &scale, &zero, nulstr, tdisp, &status); printf(" %s, %ld, %s, %s, %f, %f, %s, %s.\n", ttype[0], tbcol[0], tunit[0], tform[0], scale, zero, nulstr, tdisp); } printf("\n"); /* ############################################### # test the insert/delete row/column routines # ############################################### */ if (ffirow(fptr, 2, 3, &status) > 0) goto errstatus; nrows = 14; ffgcvs(fptr, 1, 1, 1, nrows, "UNDEFINED", inskey, &anynull, &status); ffgcvb(fptr, 2, 1, 1, nrows, 99, binarray, &anynull, &status); ffgcvi(fptr, 2, 1, 1, nrows, 99, iinarray, &anynull, &status); ffgcvj(fptr, 3, 1, 1, nrows, 99, jinarray, &anynull, &status); ffgcve(fptr, 4, 1, 1, nrows, 99., einarray, &anynull, &status); ffgcvd(fptr, 5, 1, 1, nrows, 99., dinarray, &anynull, &status); printf("\nData values after inserting 3 rows after row 2:\n"); for (ii = 0; ii < nrows; ii++) { printf("%15s %2d %2d %2ld %4.1f %4.1f\n", inskey[ii], binarray[ii], iinarray[ii], jinarray[ii], einarray[ii], dinarray[ii]); } if (ffdrow(fptr, 10, 2, &status) > 0) goto errstatus; nrows = 12; ffgcvs(fptr, 1, 1, 1, nrows, "UNDEFINED", inskey, &anynull, &status); ffgcvb(fptr, 2, 1, 1, nrows, 99, binarray, &anynull, &status); ffgcvi(fptr, 2, 1, 1, nrows, 99, iinarray, &anynull, &status); ffgcvj(fptr, 3, 1, 1, nrows, 99, jinarray, &anynull, &status); ffgcve(fptr, 4, 1, 1, nrows, 99., einarray, &anynull, &status); ffgcvd(fptr, 5, 1, 1, nrows, 99., dinarray, &anynull, &status); printf("\nData values after deleting 2 rows at row 10:\n"); for (ii = 0; ii < nrows; ii++) { printf("%15s %2d %2d %2ld %4.1f %4.1f\n", inskey[ii], binarray[ii], iinarray[ii], jinarray[ii], einarray[ii], dinarray[ii]); } if (ffdcol(fptr, 3, &status) > 0) goto errstatus; ffgcvs(fptr, 1, 1, 1, nrows, "UNDEFINED", inskey, &anynull, &status); ffgcvb(fptr, 2, 1, 1, nrows, 99, binarray, &anynull, &status); ffgcvi(fptr, 2, 1, 1, nrows, 99, iinarray, &anynull, &status); ffgcve(fptr, 3, 1, 1, nrows, 99., einarray, &anynull, &status); ffgcvd(fptr, 4, 1, 1, nrows, 99., dinarray, &anynull, &status); printf("\nData values after deleting column 3:\n"); for (ii = 0; ii < nrows; ii++) { printf("%15s %2d %2d %4.1f %4.1f\n", inskey[ii], binarray[ii], iinarray[ii], einarray[ii], dinarray[ii]); } if (fficol(fptr, 5, "INSERT_COL", "F14.6", &status) > 0) goto errstatus; ffgcvs(fptr, 1, 1, 1, nrows, "UNDEFINED", inskey, &anynull, &status); ffgcvb(fptr, 2, 1, 1, nrows, 99, binarray, &anynull, &status); ffgcvi(fptr, 2, 1, 1, nrows, 99, iinarray, &anynull, &status); ffgcve(fptr, 3, 1, 1, nrows, 99., einarray, &anynull, &status); ffgcvd(fptr, 4, 1, 1, nrows, 99., dinarray, &anynull, &status); ffgcvj(fptr, 5, 1, 1, nrows, 99, jinarray, &anynull, &status); printf("\nData values after inserting column 5:\n"); for (ii = 0; ii < nrows; ii++) { printf("%15s %2d %2d %4.1f %4.1f %ld\n", inskey[ii], binarray[ii], iinarray[ii], einarray[ii], dinarray[ii] , jinarray[ii]); } /* ############################################################ # create a temporary file and copy the ASCII table to it, # # column by column. # ############################################################ */ bitpix = 16; naxis = 0; strcpy(filename, "!t1q2s3v6.tmp"); ffinit(&tmpfptr, filename, &status); printf("Create temporary file: ffinit status = %d\n", status); ffiimg(tmpfptr, bitpix, naxis, naxes, &status); printf("\nCreate null primary array: ffiimg status = %d\n", status); /* create an empty table with 12 rows and 0 columns */ nrows = 12; tfields = 0; rowlen = 0; ffitab(tmpfptr, rowlen, nrows, tfields, ttype, tbcol, tform, tunit, tblname, &status); printf("\nCreate ASCII table with 0 columns: ffitab status = %d\n", status); /* copy columns from one table to the other */ ffcpcl(fptr, tmpfptr, 4, 1, TRUE, &status); printf("copy column, ffcpcl status = %d\n", status); ffcpcl(fptr, tmpfptr, 3, 1, TRUE, &status); printf("copy column, ffcpcl status = %d\n", status); ffcpcl(fptr, tmpfptr, 2, 1, TRUE, &status); printf("copy column, ffcpcl status = %d\n", status); ffcpcl(fptr, tmpfptr, 1, 1, TRUE, &status); printf("copy column, ffcpcl status = %d\n", status); /* now repeat by copying ASCII input to Binary output table */ ffibin(tmpfptr, nrows, tfields, ttype, tform, tunit, tblname, 0L, &status); printf("\nCreate Binary table with 0 columns: ffibin status = %d\n", status); /* copy columns from one table to the other */ ffcpcl(fptr, tmpfptr, 4, 1, TRUE, &status); printf("copy column, ffcpcl status = %d\n", status); ffcpcl(fptr, tmpfptr, 3, 1, TRUE, &status); printf("copy column, ffcpcl status = %d\n", status); ffcpcl(fptr, tmpfptr, 2, 1, TRUE, &status); printf("copy column, ffcpcl status = %d\n", status); ffcpcl(fptr, tmpfptr, 1, 1, TRUE, &status); printf("copy column, ffcpcl status = %d\n", status); /* ffclos(tmpfptr, &status); printf("Close the tmp file: ffclos status = %d\n", status); */ ffdelt(tmpfptr, &status); printf("Delete the tmp file: ffdelt status = %d\n", status); if (status > 0) { goto errstatus; } /* ################################ # read data from binary table # ################################ */ if (ffmrhd(fptr, 1, &hdutype, &status) > 0) goto errstatus; printf("HDU number = %d\n", ffghdn(fptr, &hdunum)); ffghsp(fptr, &existkeys, &morekeys, &status); printf("header contains %d keywords with room for %d more\n",existkeys, morekeys); ffghbn(fptr, 99, &nrows, &tfields, ttype, tform, tunit, binname, &pcount, &status); printf("\nBinary table: nrows, tfields, extname, pcount: %ld %d %s %ld\n", nrows, tfields, binname, pcount); for (ii = 0; ii < tfields; ii++) printf("%8s %8s %8s \n", ttype[ii], tform[ii], tunit[ii]); for (ii = 0; ii < 40; ii++) larray[ii] = 0; printf("\nData values read from binary table:\n"); printf(" Bit column (X) data values: \n\n"); ffgcx(fptr, 3, 1, 1, 36, larray, &status); for (jj = 0; jj < 5; jj++) { for (ii = 0; ii < 8; ii++) printf("%1d",larray[jj * 8 + ii]); printf(" "); } for (ii = 0; ii < nrows; ii++) { larray[ii] = 0; xinarray[ii] = 0; binarray[ii] = 0; iinarray[ii] = 0; kinarray[ii] = 0; einarray[ii] = 0.; dinarray[ii] = 0.; cinarray[ii * 2] = 0.; minarray[ii * 2] = 0.; cinarray[ii * 2 + 1] = 0.; minarray[ii * 2 + 1] = 0.; } printf("\n\n"); ffgcvs(fptr, 1, 4, 1, 1, "", inskey, &anynull, &status); printf("null string column value = -%s- (should be --)\n",inskey[0]); nrows = 21; ffgcvs(fptr, 1, 1, 1, nrows, "NOT DEFINED", inskey, &anynull, &status); ffgcl( fptr, 2, 1, 1, nrows, larray, &status); ffgcvb(fptr, 3, 1, 1, nrows, 98, xinarray, &anynull, &status); ffgcvb(fptr, 4, 1, 1, nrows, 98, binarray, &anynull, &status); ffgcvi(fptr, 5, 1, 1, nrows, 98, iinarray, &anynull, &status); ffgcvk(fptr, 6, 1, 1, nrows, 98, kinarray, &anynull, &status); ffgcve(fptr, 7, 1, 1, nrows, 98., einarray, &anynull, &status); ffgcvd(fptr, 8, 1, 1, nrows, 98., dinarray, &anynull, &status); ffgcvc(fptr, 9, 1, 1, nrows, 98., cinarray, &anynull, &status); ffgcvm(fptr, 10, 1, 1, nrows, 98., minarray, &anynull, &status); printf("\nRead columns with ffgcv_:\n"); for (ii = 0; ii < nrows; ii++) { printf("%15s %d %3d %2d %3d %3d %5.1f %5.1f (%5.1f,%5.1f) (%5.1f,%5.1f) \n", inskey[ii], larray[ii], xinarray[ii], binarray[ii], iinarray[ii], kinarray[ii], einarray[ii], dinarray[ii], cinarray[ii * 2], cinarray[ii * 2 + 1], minarray[ii * 2], minarray[ii * 2 + 1]); } for (ii = 0; ii < nrows; ii++) { larray[ii] = 0; xinarray[ii] = 0; binarray[ii] = 0; iinarray[ii] = 0; kinarray[ii] = 0; einarray[ii] = 0.; dinarray[ii] = 0.; cinarray[ii * 2] = 0.; minarray[ii * 2] = 0.; cinarray[ii * 2 + 1] = 0.; minarray[ii * 2 + 1] = 0.; } ffgcfs(fptr, 1, 1, 1, nrows, inskey, larray2, &anynull, &status); ffgcfl(fptr, 2, 1, 1, nrows, larray, larray2, &anynull, &status); ffgcfb(fptr, 3, 1, 1, nrows, xinarray, larray2, &anynull, &status); ffgcfb(fptr, 4, 1, 1, nrows, binarray, larray2, &anynull, &status); ffgcfi(fptr, 5, 1, 1, nrows, iinarray, larray2, &anynull, &status); ffgcfk(fptr, 6, 1, 1, nrows, kinarray, larray2, &anynull, &status); ffgcfe(fptr, 7, 1, 1, nrows, einarray, larray2, &anynull, &status); ffgcfd(fptr, 8, 1, 1, nrows, dinarray, larray2, &anynull, &status); ffgcfc(fptr, 9, 1, 1, nrows, cinarray, larray2, &anynull, &status); ffgcfm(fptr, 10, 1, 1, nrows, minarray, larray2, &anynull, &status); printf("\nRead columns with ffgcf_:\n"); for (ii = 0; ii < 10; ii++) { printf("%15s %d %3d %2d %3d %3d %5.1f %5.1f (%5.1f,%5.1f) (%5.1f,%5.1f)\n", inskey[ii], larray[ii], xinarray[ii], binarray[ii], iinarray[ii], kinarray[ii], einarray[ii], dinarray[ii], cinarray[ii * 2], cinarray[ii * 2 + 1], minarray[ii * 2], minarray[ii * 2 + 1]); } for (ii = 10; ii < nrows; ii++) { /* don't try to print the NaN values */ printf("%15s %d %3d %2d %3d \n", inskey[ii], larray[ii], xinarray[ii], binarray[ii], iinarray[ii]); } ffprec(fptr, "key_prec= 'This keyword was written by f_prec' / comment here", &status); /* ############################################### # test the insert/delete row/column routines # ############################################### */ if (ffirow(fptr, 2, 3, &status) > 0) goto errstatus; nrows = 14; ffgcvs(fptr, 1, 1, 1, nrows, "NOT DEFINED", inskey, &anynull, &status); ffgcvb(fptr, 4, 1, 1, nrows, 98, binarray, &anynull, &status); ffgcvi(fptr, 5, 1, 1, nrows, 98, iinarray, &anynull, &status); ffgcvj(fptr, 6, 1, 1, nrows, 98, jinarray, &anynull, &status); ffgcve(fptr, 7, 1, 1, nrows, 98., einarray, &anynull, &status); ffgcvd(fptr, 8, 1, 1, nrows, 98., dinarray, &anynull, &status); printf("\nData values after inserting 3 rows after row 2:\n"); for (ii = 0; ii < nrows; ii++) { printf("%15s %2d %3d %3ld %5.1f %5.1f\n", inskey[ii], binarray[ii], iinarray[ii], jinarray[ii], einarray[ii], dinarray[ii]); } if (ffdrow(fptr, 10, 2, &status) > 0) goto errstatus; nrows = 12; ffgcvs(fptr, 1, 1, 1, nrows, "NOT DEFINED", inskey, &anynull, &status); ffgcvb(fptr, 4, 1, 1, nrows, 98, binarray, &anynull, &status); ffgcvi(fptr, 5, 1, 1, nrows, 98, iinarray, &anynull, &status); ffgcvj(fptr, 6, 1, 1, nrows, 98, jinarray, &anynull, &status); ffgcve(fptr, 7, 1, 1, nrows, 98., einarray, &anynull, &status); ffgcvd(fptr, 8, 1, 1, nrows, 98., dinarray, &anynull, &status); printf("\nData values after deleting 2 rows at row 10:\n"); for (ii = 0; ii < nrows; ii++) { printf("%15s %2d %3d %3ld %5.1f %5.1f\n", inskey[ii], binarray[ii], iinarray[ii], jinarray[ii], einarray[ii], dinarray[ii]); } if (ffdcol(fptr, 6, &status) > 0) goto errstatus; ffgcvs(fptr, 1, 1, 1, nrows, "NOT DEFINED", inskey, &anynull, &status); ffgcvb(fptr, 4, 1, 1, nrows, 98, binarray, &anynull, &status); ffgcvi(fptr, 5, 1, 1, nrows, 98, iinarray, &anynull, &status); ffgcve(fptr, 6, 1, 1, nrows, 98., einarray, &anynull, &status); ffgcvd(fptr, 7, 1, 1, nrows, 98., dinarray, &anynull, &status); printf("\nData values after deleting column 6:\n"); for (ii = 0; ii < nrows; ii++) { printf("%15s %2d %3d %5.1f %5.1f\n", inskey[ii], binarray[ii], iinarray[ii], einarray[ii], dinarray[ii]); } if (fficol(fptr, 8, "INSERT_COL", "1E", &status) > 0) goto errstatus; ffgcvs(fptr, 1, 1, 1, nrows, "NOT DEFINED", inskey, &anynull, &status); ffgcvb(fptr, 4, 1, 1, nrows, 98, binarray, &anynull, &status); ffgcvi(fptr, 5, 1, 1, nrows, 98, iinarray, &anynull, &status); ffgcve(fptr, 6, 1, 1, nrows, 98., einarray, &anynull, &status); ffgcvd(fptr, 7, 1, 1, nrows, 98., dinarray, &anynull, &status); ffgcvj(fptr, 8, 1, 1, nrows, 98, jinarray, &anynull, &status); printf("\nData values after inserting column 8:\n"); for (ii = 0; ii < nrows; ii++) { printf("%15s %2d %3d %5.1f %5.1f %ld\n", inskey[ii], binarray[ii], iinarray[ii], einarray[ii], dinarray[ii] , jinarray[ii]); } ffpclu(fptr, 8, 1, 1, 10, &status); ffgcvs(fptr, 1, 1, 1, nrows, "NOT DEFINED", inskey, &anynull, &status); ffgcvb(fptr, 4, 1, 1, nrows, 98, binarray, &anynull, &status); ffgcvi(fptr, 5, 1, 1, nrows, 98, iinarray, &anynull, &status); ffgcve(fptr, 6, 1, 1, nrows, 98., einarray, &anynull, &status); ffgcvd(fptr, 7, 1, 1, nrows, 98., dinarray, &anynull, &status); ffgcvj(fptr, 8, 1, 1, nrows, 98, jinarray, &anynull, &status); printf("\nValues after setting 1st 10 elements in column 8 = null:\n"); for (ii = 0; ii < nrows; ii++) { printf("%15s %2d %3d %5.1f %5.1f %ld\n", inskey[ii], binarray[ii], iinarray[ii], einarray[ii], dinarray[ii] , jinarray[ii]); } /* ############################################################ # create a temporary file and copy the binary table to it,# # column by column. # ############################################################ */ bitpix = 16; naxis = 0; strcpy(filename, "!t1q2s3v5.tmp"); ffinit(&tmpfptr, filename, &status); printf("Create temporary file: ffinit status = %d\n", status); ffiimg(tmpfptr, bitpix, naxis, naxes, &status); printf("\nCreate null primary array: ffiimg status = %d\n", status); /* create an empty table with 22 rows and 0 columns */ nrows = 22; tfields = 0; ffibin(tmpfptr, nrows, tfields, ttype, tform, tunit, binname, 0L, &status); printf("\nCreate binary table with 0 columns: ffibin status = %d\n", status); /* copy columns from one table to the other */ ffcpcl(fptr, tmpfptr, 7, 1, TRUE, &status); printf("copy column, ffcpcl status = %d\n", status); ffcpcl(fptr, tmpfptr, 6, 1, TRUE, &status); printf("copy column, ffcpcl status = %d\n", status); ffcpcl(fptr, tmpfptr, 5, 1, TRUE, &status); printf("copy column, ffcpcl status = %d\n", status); ffcpcl(fptr, tmpfptr, 4, 1, TRUE, &status); printf("copy column, ffcpcl status = %d\n", status); ffcpcl(fptr, tmpfptr, 3, 1, TRUE, &status); printf("copy column, ffcpcl status = %d\n", status); ffcpcl(fptr, tmpfptr, 2, 1, TRUE, &status); printf("copy column, ffcpcl status = %d\n", status); ffcpcl(fptr, tmpfptr, 1, 1, TRUE, &status); printf("copy column, ffcpcl status = %d\n", status); /* ffclos(tmpfptr, &status); printf("Close the tmp file: ffclos status = %d\n", status); */ ffdelt(tmpfptr, &status); printf("Delete the tmp file: ffdelt status = %d\n", status); if (status > 0) { goto errstatus; } /* #################################################### # insert binary table following the primary array # #################################################### */ ffmahd(fptr, 1, &hdutype, &status); strcpy(tform[0], "15A"); strcpy(tform[1], "1L"); strcpy(tform[2], "16X"); strcpy(tform[3], "1B"); strcpy(tform[4], "1I"); strcpy(tform[5], "1J"); strcpy(tform[6], "1E"); strcpy(tform[7], "1D"); strcpy(tform[8], "1C"); strcpy(tform[9], "1M"); strcpy(ttype[0], "Avalue"); strcpy(ttype[1], "Lvalue"); strcpy(ttype[2], "Xvalue"); strcpy(ttype[3], "Bvalue"); strcpy(ttype[4], "Ivalue"); strcpy(ttype[5], "Jvalue"); strcpy(ttype[6], "Evalue"); strcpy(ttype[7], "Dvalue"); strcpy(ttype[8], "Cvalue"); strcpy(ttype[9], "Mvalue"); strcpy(tunit[0], ""); strcpy(tunit[1], "m**2"); strcpy(tunit[2], "cm"); strcpy(tunit[3], "erg/s"); strcpy(tunit[4], "km/s"); strcpy(tunit[5], ""); strcpy(tunit[6], ""); strcpy(tunit[7], ""); strcpy(tunit[8], ""); strcpy(tunit[9], ""); nrows = 20; tfields = 10; pcount = 0; ffibin(fptr, nrows, tfields, ttype, tform, tunit, binname, pcount, &status); printf("ffibin status = %d\n", status); printf("HDU number = %d\n", ffghdn(fptr, &hdunum)); extvers = 3; ffpkyj(fptr, "EXTVER", extvers, "extension version number", &status); ffpkyj(fptr, "TNULL4", 77, "value for undefined pixels", &status); ffpkyj(fptr, "TNULL5", 77, "value for undefined pixels", &status); ffpkyj(fptr, "TNULL6", 77, "value for undefined pixels", &status); ffpkyj(fptr, "TSCAL4", 1000, "scaling factor", &status); ffpkyj(fptr, "TSCAL5", 1, "scaling factor", &status); ffpkyj(fptr, "TSCAL6", 100, "scaling factor", &status); ffpkyj(fptr, "TZERO4", 0, "scaling offset", &status); ffpkyj(fptr, "TZERO5", 32768, "scaling offset", &status); ffpkyj(fptr, "TZERO6", 100, "scaling offset", &status); fftnul(fptr, 4, 77, &status); /* define null value for int cols */ fftnul(fptr, 5, 77, &status); fftnul(fptr, 6, 77, &status); /* set scaling */ fftscl(fptr, 4, 1000., 0., &status); fftscl(fptr, 5, 1., 32768., &status); fftscl(fptr, 6, 100., 100., &status); /* ############################ # write data to columns # ############################ */ /* initialize arrays of values to write to table */ joutarray[0] = 0; joutarray[1] = 1000; joutarray[2] = 10000; joutarray[3] = 32768; joutarray[4] = 65535; for (ii = 4; ii < 7; ii++) { ffpclj(fptr, ii, 1, 1, 5, joutarray, &status); if (status == NUM_OVERFLOW) { printf("Overflow writing to column %ld\n", ii); status = 0; } ffpclu(fptr, ii, 6, 1, 1, &status); /* write null value */ } for (jj = 4; jj < 7; jj++) { ffgcvj(fptr, jj, 1, 1, 6, -999, jinarray, &anynull, &status); for (ii = 0; ii < 6; ii++) { printf(" %6ld", jinarray[ii]); } printf("\n"); } printf("\n"); /* turn off scaling, and read the unscaled values */ fftscl(fptr, 4, 1., 0., &status); fftscl(fptr, 5, 1., 0., &status); fftscl(fptr, 6, 1., 0., &status); for (jj = 4; jj < 7; jj++) { ffgcvj(fptr, jj, 1, 1, 6, -999, jinarray, &anynull, &status); for (ii = 0; ii < 6; ii++) { printf(" %6ld", jinarray[ii]); } printf("\n"); } /* ###################################################### # insert image extension following the binary table # ###################################################### */ bitpix = -32; naxis = 2; naxes[0] = 15; naxes[1] = 25; ffiimg(fptr, bitpix, naxis, naxes, &status); printf("\nCreate image extension: ffiimg status = %d\n", status); printf("HDU number = %d\n", ffghdn(fptr, &hdunum)); for (jj = 0; jj < 30; jj++) { for (ii = 0; ii < 19; ii++) { imgarray[jj][ii] = (short) ((jj * 10) + ii); } } ffp2di(fptr, 1, 19, naxes[0], naxes[1], imgarray[0], &status); printf("\nWrote whole 2D array: ffp2di status = %d\n", status); for (jj = 0; jj < 30; jj++) { for (ii = 0; ii < 19; ii++) { imgarray[jj][ii] = 0; } } ffg2di(fptr, 1, 0, 19, naxes[0], naxes[1], imgarray[0], &anynull, &status); printf("\nRead whole 2D array: ffg2di status = %d\n", status); for (jj = 0; jj < 30; jj++) { for (ii = 0; ii < 19; ii++) { printf(" %3d", imgarray[jj][ii]); } printf("\n"); } for (jj = 0; jj < 30; jj++) { for (ii = 0; ii < 19; ii++) { imgarray[jj][ii] = 0; } } for (jj = 0; jj < 20; jj++) { for (ii = 0; ii < 10; ii++) { imgarray2[jj][ii] = (short) ((jj * -10) - ii); } } fpixels[0] = 5; fpixels[1] = 5; lpixels[0] = 14; lpixels[1] = 14; ffpssi(fptr, 1, naxis, naxes, fpixels, lpixels, imgarray2[0], &status); printf("\nWrote subset 2D array: ffpssi status = %d\n", status); ffg2di(fptr, 1, 0, 19, naxes[0], naxes[1], imgarray[0], &anynull, &status); printf("\nRead whole 2D array: ffg2di status = %d\n", status); for (jj = 0; jj < 30; jj++) { for (ii = 0; ii < 19; ii++) { printf(" %3d", imgarray[jj][ii]); } printf("\n"); } fpixels[0] = 2; fpixels[1] = 5; lpixels[0] = 10; lpixels[1] = 8; inc[0] = 2; inc[1] = 3; for (jj = 0; jj < 30; jj++) { for (ii = 0; ii < 19; ii++) { imgarray[jj][ii] = 0; } } ffgsvi(fptr, 1, naxis, naxes, fpixels, lpixels, inc, 0, imgarray[0], &anynull, &status); printf("\nRead subset of 2D array: ffgsvi status = %d\n", status); for (ii = 0; ii < 10; ii++) { printf(" %3d", imgarray[0][ii]); } printf("\n"); /* ########################################################### # insert another image extension # # copy the image extension to primary array of tmp file. # # then delete the tmp file, and the image extension # ########################################################### */ bitpix = 16; naxis = 2; naxes[0] = 15; naxes[1] = 25; ffiimg(fptr, bitpix, naxis, naxes, &status); printf("\nCreate image extension: ffiimg status = %d\n", status); printf("HDU number = %d\n", ffghdn(fptr, &hdunum)); strcpy(filename, "t1q2s3v4.tmp"); ffinit(&tmpfptr, filename, &status); printf("Create temporary file: ffinit status = %d\n", status); ffcopy(fptr, tmpfptr, 0, &status); printf("Copy image extension to primary array of tmp file.\n"); printf("ffcopy status = %d\n", status); ffgrec(tmpfptr, 1, card, &status); printf("%s\n", card); ffgrec(tmpfptr, 2, card, &status); printf("%s\n", card); ffgrec(tmpfptr, 3, card, &status); printf("%s\n", card); ffgrec(tmpfptr, 4, card, &status); printf("%s\n", card); ffgrec(tmpfptr, 5, card, &status); printf("%s\n", card); ffgrec(tmpfptr, 6, card, &status); printf("%s\n", card); ffdelt(tmpfptr, &status); printf("Delete the tmp file: ffdelt status = %d\n", status); ffdhdu(fptr, &hdutype, &status); printf("Delete the image extension; hdutype, status = %d %d\n", hdutype, status); printf("HDU number = %d\n", ffghdn(fptr, &hdunum)); /* ########################################################### # append bintable extension with variable length columns # ########################################################### */ ffcrhd(fptr, &status); printf("ffcrhd status = %d\n", status); strcpy(tform[0], "1PA"); strcpy(tform[1], "1PL"); strcpy(tform[2], "1PB"); /* Fortran FITSIO doesn't support 1PX */ strcpy(tform[3], "1PB"); strcpy(tform[4], "1PI"); strcpy(tform[5], "1PJ"); strcpy(tform[6], "1PE"); strcpy(tform[7], "1PD"); strcpy(tform[8], "1PC"); strcpy(tform[9], "1PM"); strcpy(ttype[0], "Avalue"); strcpy(ttype[1], "Lvalue"); strcpy(ttype[2], "Xvalue"); strcpy(ttype[3], "Bvalue"); strcpy(ttype[4], "Ivalue"); strcpy(ttype[5], "Jvalue"); strcpy(ttype[6], "Evalue"); strcpy(ttype[7], "Dvalue"); strcpy(ttype[8], "Cvalue"); strcpy(ttype[9], "Mvalue"); strcpy(tunit[0], ""); strcpy(tunit[1], "m**2"); strcpy(tunit[2], "cm"); strcpy(tunit[3], "erg/s"); strcpy(tunit[4], "km/s"); strcpy(tunit[5], ""); strcpy(tunit[6], ""); strcpy(tunit[7], ""); strcpy(tunit[8], ""); strcpy(tunit[9], ""); nrows = 20; tfields = 10; pcount = 0; ffphbn(fptr, nrows, tfields, ttype, tform, tunit, binname, pcount, &status); printf("Variable length arrays: ffphbn status = %d\n", status); extvers = 4; ffpkyj(fptr, "EXTVER", extvers, "extension version number", &status); ffpkyj(fptr, "TNULL4", 88, "value for undefined pixels", &status); ffpkyj(fptr, "TNULL5", 88, "value for undefined pixels", &status); ffpkyj(fptr, "TNULL6", 88, "value for undefined pixels", &status); /* ############################ # write data to columns # ############################ */ /* initialize arrays of values to write to table */ strcpy(iskey,"abcdefghijklmnopqrst"); for (ii = 0; ii < 20; ii++) { boutarray[ii] = (unsigned char) (ii + 1); ioutarray[ii] = (short) (ii + 1); joutarray[ii] = ii + 1; eoutarray[ii] = (float) (ii + 1); doutarray[ii] = ii + 1; } larray[0] = 0; larray[1] = 1; larray[2] = 0; larray[3] = 0; larray[4] = 1; larray[5] = 1; larray[6] = 0; larray[7] = 0; larray[8] = 0; larray[9] = 1; larray[10] = 1; larray[11] = 1; larray[12] = 0; larray[13] = 0; larray[14] = 0; larray[15] = 0; larray[16] = 1; larray[17] = 1; larray[18] = 1; larray[19] = 1; /* write values in 1st row */ /* strncpy(inskey[0], iskey, 1); */ inskey[0][0] = '\0'; /* write a null string (i.e., a blank) */ ffpcls(fptr, 1, 1, 1, 1, inskey, &status); /* write string values */ ffpcll(fptr, 2, 1, 1, 1, larray, &status); /* write logicals */ ffpclx(fptr, 3, 1, 1, 1, larray, &status); /* write bits */ ffpclb(fptr, 4, 1, 1, 1, boutarray, &status); ffpcli(fptr, 5, 1, 1, 1, ioutarray, &status); ffpclj(fptr, 6, 1, 1, 1, joutarray, &status); ffpcle(fptr, 7, 1, 1, 1, eoutarray, &status); ffpcld(fptr, 8, 1, 1, 1, doutarray, &status); for (ii = 2; ii <= 20; ii++) /* loop over rows 1 - 20 */ { strncpy(inskey[0], iskey, ii); inskey[0][ii] = '\0'; ffpcls(fptr, 1, ii, 1, 1, inskey, &status); /* write string values */ ffpcll(fptr, 2, ii, 1, ii, larray, &status); /* write logicals */ ffpclu(fptr, 2, ii, ii-1, 1, &status); ffpclx(fptr, 3, ii, 1, ii, larray, &status); /* write bits */ ffpclb(fptr, 4, ii, 1, ii, boutarray, &status); ffpclu(fptr, 4, ii, ii-1, 1, &status); ffpcli(fptr, 5, ii, 1, ii, ioutarray, &status); ffpclu(fptr, 5, ii, ii-1, 1, &status); ffpclj(fptr, 6, ii, 1, ii, joutarray, &status); ffpclu(fptr, 6, ii, ii-1, 1, &status); ffpcle(fptr, 7, ii, 1, ii, eoutarray, &status); ffpclu(fptr, 7, ii, ii-1, 1, &status); ffpcld(fptr, 8, ii, 1, ii, doutarray, &status); ffpclu(fptr, 8, ii, ii-1, 1, &status); } printf("ffpcl_ status = %d\n", status); /* ################################# # close then reopen this HDU # ################################# */ ffmrhd(fptr, -1, &hdutype, &status); ffmrhd(fptr, 1, &hdutype, &status); /* ############################# # read data from columns # ############################# */ ffgkyj(fptr, "PCOUNT", &pcount, comm, &status); printf("PCOUNT = %ld\n", pcount); /* initialize the variables to be read */ strcpy(inskey[0]," "); strcpy(iskey," "); printf("HDU number = %d\n", ffghdn(fptr, &hdunum)); for (ii = 1; ii <= 20; ii++) /* loop over rows 1 - 20 */ { for (jj = 0; jj < ii; jj++) { larray[jj] = 0; boutarray[jj] = 0; ioutarray[jj] = 0; joutarray[jj] = 0; eoutarray[jj] = 0; doutarray[jj] = 0; } ffgcvs(fptr, 1, ii, 1, 1, iskey, inskey, &anynull, &status); printf("A %s %d\nL", inskey[0], status); ffgcl( fptr, 2, ii, 1, ii, larray, &status); for (jj = 0; jj < ii; jj++) printf(" %2d", larray[jj]); printf(" %d\nX", status); ffgcx(fptr, 3, ii, 1, ii, larray, &status); for (jj = 0; jj < ii; jj++) printf(" %2d", larray[jj]); printf(" %d\nB", status); ffgcvb(fptr, 4, ii, 1, ii, 99, boutarray, &anynull, &status); for (jj = 0; jj < ii; jj++) printf(" %2d", boutarray[jj]); printf(" %d\nI", status); ffgcvi(fptr, 5, ii, 1, ii, 99, ioutarray, &anynull, &status); for (jj = 0; jj < ii; jj++) printf(" %2d", ioutarray[jj]); printf(" %d\nJ", status); ffgcvj(fptr, 6, ii, 1, ii, 99, joutarray, &anynull, &status); for (jj = 0; jj < ii; jj++) printf(" %2ld", joutarray[jj]); printf(" %d\nE", status); ffgcve(fptr, 7, ii, 1, ii, 99., eoutarray, &anynull, &status); for (jj = 0; jj < ii; jj++) printf(" %2.0f", eoutarray[jj]); printf(" %d\nD", status); ffgcvd(fptr, 8, ii, 1, ii, 99., doutarray, &anynull, &status); for (jj = 0; jj < ii; jj++) printf(" %2.0f", doutarray[jj]); printf(" %d\n", status); ffgdes(fptr, 8, ii, &repeat, &offset, &status); printf("Column 8 repeat and offset = %ld %ld\n", repeat, offset); } /* ##################################### # create another image extension # ##################################### */ bitpix = 32; naxis = 2; naxes[0] = 10; naxes[1] = 2; npixels = 20; /* ffcrim(fptr, bitpix, naxis, naxes, &status); */ ffiimg(fptr, bitpix, naxis, naxes, &status); printf("\nffcrim status = %d\n", status); /* initialize arrays of values to write to primary array */ for (ii = 0; ii < npixels; ii++) { boutarray[ii] = (unsigned char) (ii * 2); ioutarray[ii] = (short) (ii * 2); joutarray[ii] = ii * 2; koutarray[ii] = ii * 2; eoutarray[ii] = (float) (ii * 2); doutarray[ii] = ii * 2; } /* write a few pixels with each datatype */ ffppr(fptr, TBYTE, 1, 2, &boutarray[0], &status); ffppr(fptr, TSHORT, 3, 2, &ioutarray[2], &status); ffppr(fptr, TINT, 5, 2, &koutarray[4], &status); ffppr(fptr, TSHORT, 7, 2, &ioutarray[6], &status); ffppr(fptr, TLONG, 9, 2, &joutarray[8], &status); ffppr(fptr, TFLOAT, 11, 2, &eoutarray[10], &status); ffppr(fptr, TDOUBLE, 13, 2, &doutarray[12], &status); printf("ffppr status = %d\n", status); /* read back the pixels with each datatype */ bnul = 0; inul = 0; knul = 0; jnul = 0; enul = 0.; dnul = 0.; ffgpv(fptr, TBYTE, 1, 14, &bnul, binarray, &anynull, &status); ffgpv(fptr, TSHORT, 1, 14, &inul, iinarray, &anynull, &status); ffgpv(fptr, TINT, 1, 14, &knul, kinarray, &anynull, &status); ffgpv(fptr, TLONG, 1, 14, &jnul, jinarray, &anynull, &status); ffgpv(fptr, TFLOAT, 1, 14, &enul, einarray, &anynull, &status); ffgpv(fptr, TDOUBLE, 1, 14, &dnul, dinarray, &anynull, &status); printf("\nImage values written with ffppr and read with ffgpv:\n"); npixels = 14; for (ii = 0; ii < npixels; ii++) printf(" %2d", binarray[ii]); printf(" %d (byte)\n", anynull); for (ii = 0; ii < npixels; ii++) printf(" %2d", iinarray[ii]); printf(" %d (short)\n", anynull); for (ii = 0; ii < npixels; ii++) printf(" %2d", kinarray[ii]); printf(" %d (int)\n", anynull); for (ii = 0; ii < npixels; ii++) printf(" %2ld", jinarray[ii]); printf(" %d (long)\n", anynull); for (ii = 0; ii < npixels; ii++) printf(" %2.0f", einarray[ii]); printf(" %d (float)\n", anynull); for (ii = 0; ii < npixels; ii++) printf(" %2.0f", dinarray[ii]); printf(" %d (double)\n", anynull); /* ########################################## # test world coordinate system routines # ########################################## */ xrval = 45.83; yrval = 63.57; xrpix = 256.; yrpix = 257.; xinc = -.00277777; yinc = .00277777; /* write the WCS keywords */ /* use example values from the latest WCS document */ ffpkyd(fptr, "CRVAL1", xrval, 10, "comment", &status); ffpkyd(fptr, "CRVAL2", yrval, 10, "comment", &status); ffpkyd(fptr, "CRPIX1", xrpix, 10, "comment", &status); ffpkyd(fptr, "CRPIX2", yrpix, 10, "comment", &status); ffpkyd(fptr, "CDELT1", xinc, 10, "comment", &status); ffpkyd(fptr, "CDELT2", yinc, 10, "comment", &status); /* ffpkyd(fptr, "CROTA2", rot, 10, "comment", &status); */ ffpkys(fptr, "CTYPE1", xcoordtype, "comment", &status); ffpkys(fptr, "CTYPE2", ycoordtype, "comment", &status); printf("\nWrote WCS keywords status = %d\n",status); xrval = 0.; yrval = 0.; xrpix = 0.; yrpix = 0.; xinc = 0.; yinc = 0.; rot = 0.; ffgics(fptr, &xrval, &yrval, &xrpix, &yrpix, &xinc, &yinc, &rot, ctype, &status); printf("Read WCS keywords with ffgics status = %d\n",status); xpix = 0.5; ypix = 0.5; ffwldp(xpix,ypix,xrval,yrval,xrpix,yrpix,xinc,yinc,rot,ctype, &xpos, &ypos,&status); printf(" CRVAL1, CRVAL2 = %16.12f, %16.12f\n", xrval,yrval); printf(" CRPIX1, CRPIX2 = %16.12f, %16.12f\n", xrpix,yrpix); printf(" CDELT1, CDELT2 = %16.12f, %16.12f\n", xinc,yinc); printf(" Rotation = %10.3f, CTYPE = %s\n", rot, ctype); printf("Calculated sky coordinate with ffwldp status = %d\n",status); printf(" Pixels (%8.4f,%8.4f) --> (%11.6f, %11.6f) Sky\n", xpix,ypix,xpos,ypos); ffxypx(xpos,ypos,xrval,yrval,xrpix,yrpix,xinc,yinc,rot,ctype, &xpix, &ypix,&status); printf("Calculated pixel coordinate with ffxypx status = %d\n",status); printf(" Sky (%11.6f, %11.6f) --> (%8.4f,%8.4f) Pixels\n", xpos,ypos,xpix,ypix); /* ###################################### # append another ASCII table # ###################################### */ strcpy(tform[0], "A15"); strcpy(tform[1], "I11"); strcpy(tform[2], "F15.6"); strcpy(tform[3], "E13.5"); strcpy(tform[4], "D22.14"); strcpy(ttype[0], "Name"); strcpy(ttype[1], "Ivalue"); strcpy(ttype[2], "Fvalue"); strcpy(ttype[3], "Evalue"); strcpy(ttype[4], "Dvalue"); strcpy(tunit[0], ""); strcpy(tunit[1], "m**2"); strcpy(tunit[2], "cm"); strcpy(tunit[3], "erg/s"); strcpy(tunit[4], "km/s"); nrows = 11; tfields = 5; strcpy(tblname, "new_table"); ffcrtb(fptr, ASCII_TBL, nrows, tfields, ttype, tform, tunit, tblname, &status); printf("\nffcrtb status = %d\n", status); extvers = 5; ffpkyj(fptr, "EXTVER", extvers, "extension version number", &status); ffpcl(fptr, TSTRING, 1, 1, 1, 3, onskey, &status); /* write string values */ /* initialize arrays of values to write */ for (ii = 0; ii < npixels; ii++) { boutarray[ii] = (unsigned char) (ii * 3); ioutarray[ii] = (short) (ii * 3); joutarray[ii] = ii * 3; koutarray[ii] = ii * 3; eoutarray[ii] = (float) (ii * 3); doutarray[ii] = ii * 3; } for (ii = 2; ii < 6; ii++) /* loop over cols 2 - 5 */ { ffpcl(fptr, TBYTE, ii, 1, 1, 2, boutarray, &status); ffpcl(fptr, TSHORT, ii, 3, 1, 2, &ioutarray[2], &status); ffpcl(fptr, TLONG, ii, 5, 1, 2, &joutarray[4], &status); ffpcl(fptr, TFLOAT, ii, 7, 1, 2, &eoutarray[6], &status); ffpcl(fptr, TDOUBLE, ii, 9, 1, 2, &doutarray[8], &status); } printf("ffpcl status = %d\n", status); /* read back the pixels with each datatype */ ffgcv(fptr, TBYTE, 2, 1, 1, 10, &bnul, binarray, &anynull, &status); ffgcv(fptr, TSHORT, 2, 1, 1, 10, &inul, iinarray, &anynull, &status); ffgcv(fptr, TINT, 3, 1, 1, 10, &knul, kinarray, &anynull, &status); ffgcv(fptr, TLONG, 3, 1, 1, 10, &jnul, jinarray, &anynull, &status); ffgcv(fptr, TFLOAT, 4, 1, 1, 10, &enul, einarray, &anynull, &status); ffgcv(fptr, TDOUBLE, 5, 1, 1, 10, &dnul, dinarray, &anynull, &status); printf("\nColumn values written with ffpcl and read with ffgcl:\n"); npixels = 10; for (ii = 0; ii < npixels; ii++) printf(" %2d", binarray[ii]); printf(" %d (byte)\n", anynull); for (ii = 0; ii < npixels; ii++) printf(" %2d", iinarray[ii]); printf(" %d (short)\n", anynull); for (ii = 0; ii < npixels; ii++) printf(" %2d", kinarray[ii]); printf(" %d (int)\n", anynull); for (ii = 0; ii < npixels; ii++) printf(" %2ld", jinarray[ii]); printf(" %d (long)\n", anynull); for (ii = 0; ii < npixels; ii++) printf(" %2.0f", einarray[ii]); printf(" %d (float)\n", anynull); for (ii = 0; ii < npixels; ii++) printf(" %2.0f", dinarray[ii]); printf(" %d (double)\n", anynull); /* ########################################################### # perform stress test by cycling thru all the extensions # ########################################################### */ printf("\nRepeatedly move to the 1st 4 HDUs of the file:\n"); for (ii = 0; ii < 10; ii++) { ffmahd(fptr, 1, &hdutype, &status); printf("%d", ffghdn(fptr, &hdunum)); ffmrhd(fptr, 1, &hdutype, &status); printf("%d", ffghdn(fptr, &hdunum)); ffmrhd(fptr, 1, &hdutype, &status); printf("%d", ffghdn(fptr, &hdunum)); ffmrhd(fptr, 1, &hdutype, &status); printf("%d", ffghdn(fptr, &hdunum)); ffmrhd(fptr, -1, &hdutype, &status); printf("%d", ffghdn(fptr, &hdunum)); if (status > 0) break; } printf("\n"); printf("Move to extensions by name and version number: (ffmnhd)\n"); extvers = 1; ffmnhd(fptr, ANY_HDU, binname, (int) extvers, &status); ffghdn(fptr, &hdunum); printf(" %s, %ld = hdu %d, %d\n", binname, extvers, hdunum, status); extvers = 3; ffmnhd(fptr, ANY_HDU, binname, (int) extvers, &status); ffghdn(fptr, &hdunum); printf(" %s, %ld = hdu %d, %d\n", binname, extvers, hdunum, status); extvers = 4; ffmnhd(fptr, ANY_HDU, binname, (int) extvers, &status); ffghdn(fptr, &hdunum); printf(" %s, %ld = hdu %d, %d\n", binname, extvers, hdunum, status); strcpy(tblname, "Test-ASCII"); extvers = 2; ffmnhd(fptr, ANY_HDU, tblname, (int) extvers, &status); ffghdn(fptr, &hdunum); printf(" %s, %ld = hdu %d, %d\n", tblname, extvers, hdunum, status); strcpy(tblname, "new_table"); extvers = 5; ffmnhd(fptr, ANY_HDU, tblname, (int) extvers, &status); ffghdn(fptr, &hdunum); printf(" %s, %ld = hdu %d, %d\n", tblname, extvers, hdunum, status); extvers = 0; ffmnhd(fptr, ANY_HDU, binname, (int) extvers, &status); ffghdn(fptr, &hdunum); printf(" %s, %ld = hdu %d, %d\n", binname, extvers, hdunum, status); extvers = 17; ffmnhd(fptr, ANY_HDU, binname, (int) extvers, &status); ffghdn(fptr, &hdunum); printf(" %s, %ld = hdu %d, %d", binname, extvers, hdunum, status); printf (" (expect a 301 error status here)\n"); status = 0; ffthdu(fptr, &hdunum, &status); printf("Total number of HDUs in the file = %d\n", hdunum); /* ######################## # checksum tests # ######################## */ checksum = 1234567890; ffesum(checksum, 0, asciisum); printf("\nEncode checksum: %lu -> %s\n", checksum, asciisum); checksum = 0; ffdsum(asciisum, 0, &checksum); printf("Decode checksum: %s -> %lu\n", asciisum, checksum); ffpcks(fptr, &status); /* don't print the CHECKSUM value because it is different every day because the current date is in the comment field. ffgcrd(fptr, "CHECKSUM", card, &status); printf("%s\n", card); */ ffgcrd(fptr, "DATASUM", card, &status); printf("%.30s\n", card); ffgcks(fptr, &datsum, &checksum, &status); printf("ffgcks data checksum, status = %lu, %d\n", datsum, status); ffvcks(fptr, &datastatus, &hdustatus, &status); printf("ffvcks datastatus, hdustatus, status = %d %d %d\n", datastatus, hdustatus, status); ffprec(fptr, "new_key = 'written by fxprec' / to change checksum", &status); ffupck(fptr, &status); printf("ffupck status = %d\n", status); ffgcrd(fptr, "DATASUM", card, &status); printf("%.30s\n", card); ffvcks(fptr, &datastatus, &hdustatus, &status); printf("ffvcks datastatus, hdustatus, status = %d %d %d\n", datastatus, hdustatus, status); /* delete the checksum keywords, so that the FITS file is always the same, regardless of the date of when testprog is run. */ ffdkey(fptr, "CHECKSUM", &status); ffdkey(fptr, "DATASUM", &status); /* ############################ # close file and quit # ############################ */ errstatus: /* jump here on error */ ffclos(fptr, &status); printf("ffclos status = %d\n", status); printf("\nNormally, there should be 8 error messages on the stack\n"); printf("all regarding 'numerical overflows':\n"); ffgmsg(errmsg); nmsg = 0; while (errmsg[0]) { printf(" %s\n", errmsg); nmsg++; ffgmsg(errmsg); } if (nmsg != 8) printf("\nWARNING: Did not find the expected 8 error messages!\n"); ffgerr(status, errmsg); printf("\nStatus = %d: %s\n", status, errmsg); /* free the allocated memory */ for (ii = 0; ii < 21; ii++) free(inskey[ii]); for (ii = 0; ii < 10; ii++) { free(ttype[ii]); free(tform[ii]); free(tunit[ii]); } return(status); } healpy-1.8.1/cfitsio/eval_f.c0000654000175000017530000030057712272000775016471 0ustar zoncaplanck00000000000000/************************************************************************/ /* */ /* CFITSIO Lexical Parser */ /* */ /* This file is one of 3 files containing code which parses an */ /* arithmetic expression and evaluates it in the context of an input */ /* FITS file table extension. The CFITSIO lexical parser is divided */ /* into the following 3 parts/files: the CFITSIO "front-end", */ /* eval_f.c, contains the interface between the user/CFITSIO and the */ /* real core of the parser; the FLEX interpreter, eval_l.c, takes the */ /* input string and parses it into tokens and identifies the FITS */ /* information required to evaluate the expression (ie, keywords and */ /* columns); and, the BISON grammar and evaluation routines, eval_y.c, */ /* receives the FLEX output and determines and performs the actual */ /* operations. The files eval_l.c and eval_y.c are produced from */ /* running flex and bison on the files eval.l and eval.y, respectively. */ /* (flex and bison are available from any GNU archive: see www.gnu.org) */ /* */ /* The grammar rules, rather than evaluating the expression in situ, */ /* builds a tree, or Nodal, structure mapping out the order of */ /* operations and expression dependencies. This "compilation" process */ /* allows for much faster processing of multiple rows. This technique */ /* was developed by Uwe Lammers of the XMM Science Analysis System, */ /* although the CFITSIO implementation is entirely code original. */ /* */ /* */ /* Modification History: */ /* */ /* Kent Blackburn c1992 Original parser code developed for the */ /* FTOOLS software package, in particular, */ /* the fselect task. */ /* Kent Blackburn c1995 BIT column support added */ /* Peter D Wilson Feb 1998 Vector column support added */ /* Peter D Wilson May 1998 Ported to CFITSIO library. User */ /* interface routines written, in essence */ /* making fselect, fcalc, and maketime */ /* capabilities available to all tools */ /* via single function calls. */ /* Peter D Wilson Jun 1998 Major rewrite of parser core, so as to */ /* create a run-time evaluation tree, */ /* inspired by the work of Uwe Lammers, */ /* resulting in a speed increase of */ /* 10-100 times. */ /* Peter D Wilson Jul 1998 gtifilter(a,b,c,d) function added */ /* Peter D Wilson Aug 1998 regfilter(a,b,c,d) function added */ /* Peter D Wilson Jul 1999 Make parser fitsfile-independent, */ /* allowing a purely vector-based usage */ /* Peter D Wilson Aug 1999 Add row-offset capability */ /* Peter D Wilson Sep 1999 Add row-range capability to ffcalc_rng */ /* */ /************************************************************************/ #include #include #include "eval_defs.h" #include "region.h" typedef struct { int datatype; /* Data type to cast parse results into for user */ void *dataPtr; /* Pointer to array of results, NULL if to use iterCol */ void *nullPtr; /* Pointer to nulval, use zero if NULL */ long maxRows; /* Max No. of rows to process, -1=all, 0=1 iteration */ int anyNull; /* Flag indicating at least 1 undef value encountered */ } parseInfo; /* Internal routines needed to allow the evaluator to operate on FITS data */ static void Setup_DataArrays( int nCols, iteratorCol *cols, long fRow, long nRows ); static int find_column( char *colName, void *itslval ); static int find_keywd ( char *key, void *itslval ); static int allocateCol( int nCol, int *status ); static int load_column( int varNum, long fRow, long nRows, void *data, char *undef ); static int DEBUG_PIXFILTER; #define FREE(x) { if (x) free(x); else printf("invalid free(" #x ") at %s:%d\n", __FILE__, __LINE__); } /*---------------------------------------------------------------------------*/ int fffrow( fitsfile *fptr, /* I - Input FITS file */ char *expr, /* I - Boolean expression */ long firstrow, /* I - First row of table to eval */ long nrows, /* I - Number of rows to evaluate */ long *n_good_rows, /* O - Number of rows eval to True */ char *row_status, /* O - Array of boolean results */ int *status ) /* O - Error status */ /* */ /* Evaluate a boolean expression using the indicated rows, returning an */ /* array of flags indicating which rows evaluated to TRUE/FALSE */ /*---------------------------------------------------------------------------*/ { parseInfo Info; int naxis, constant; long nelem, naxes[MAXDIMS], elem; char result; if( *status ) return( *status ); FFLOCK; if( ffiprs( fptr, 0, expr, MAXDIMS, &Info.datatype, &nelem, &naxis, naxes, status ) ) { ffcprs(); FFUNLOCK; return( *status ); } if( nelem<0 ) { constant = 1; nelem = -nelem; } else constant = 0; if( Info.datatype!=TLOGICAL || nelem!=1 ) { ffcprs(); ffpmsg("Expression does not evaluate to a logical scalar."); FFUNLOCK; return( *status = PARSE_BAD_TYPE ); } if( constant ) { /* No need to call parser... have result from ffiprs */ result = gParse.Nodes[gParse.resultNode].value.data.log; *n_good_rows = nrows; for( elem=0; elem1 ? firstrow : 1); Info.dataPtr = row_status; Info.nullPtr = NULL; Info.maxRows = nrows; if( ffiter( gParse.nCols, gParse.colData, firstrow-1, 0, parse_data, (void*)&Info, status ) == -1 ) *status = 0; /* -1 indicates exitted without error before end... OK */ if( *status ) { /***********************/ /* Error... Do nothing */ /***********************/ } else { /***********************************/ /* Count number of good rows found */ /***********************************/ *n_good_rows = 0L; for( elem=0; elemHDUposition != (infptr->Fptr)->curhdu ) ffmahd( infptr, (infptr->HDUposition) + 1, NULL, status ); if( *status ) { ffcprs(); FFUNLOCK; return( *status ); } inExt.rowLength = (long) (infptr->Fptr)->rowlength; inExt.numRows = (infptr->Fptr)->numrows; inExt.heapSize = (infptr->Fptr)->heapsize; if( inExt.numRows == 0 ) { /* Nothing to copy */ ffcprs(); FFUNLOCK; return( *status ); } if( outfptr->HDUposition != (outfptr->Fptr)->curhdu ) ffmahd( outfptr, (outfptr->HDUposition) + 1, NULL, status ); if( (outfptr->Fptr)->datastart < 0 ) ffrdef( outfptr, status ); if( *status ) { ffcprs(); FFUNLOCK; return( *status ); } outExt.rowLength = (long) (outfptr->Fptr)->rowlength; outExt.numRows = (outfptr->Fptr)->numrows; if( !outExt.numRows ) (outfptr->Fptr)->heapsize = 0L; outExt.heapSize = (outfptr->Fptr)->heapsize; if( inExt.rowLength != outExt.rowLength ) { ffpmsg("Output table has different row length from input"); ffcprs(); FFUNLOCK; return( *status = PARSE_BAD_OUTPUT ); } /***********************************/ /* Fill out Info data for parser */ /***********************************/ Info.dataPtr = (char *)malloc( (size_t) ((inExt.numRows + 1) * sizeof(char)) ); Info.nullPtr = NULL; Info.maxRows = (long) inExt.numRows; if( !Info.dataPtr ) { ffpmsg("Unable to allocate memory for row selection"); ffcprs(); FFUNLOCK; return( *status = MEMORY_ALLOCATION ); } /* make sure array is zero terminated */ ((char*)Info.dataPtr)[inExt.numRows] = 0; if( constant ) { /* Set all rows to the same value from constant result */ result = gParse.Nodes[gParse.resultNode].value.data.log; for( ntodo = 0; ntodo 1) ffirow( outfptr, outExt.numRows, nGood, status ); } do { if( ((char*)Info.dataPtr)[inloc-1] ) { ffgtbb( infptr, inloc, 1L, rdlen, buffer+rdlen*nbuff, status ); nbuff++; if( nbuff==maxrows ) { ffptbb( outfptr, outloc, 1L, rdlen*nbuff, buffer, status ); outloc += nbuff; nbuff = 0; } } inloc++; } while( !*status && inloc<=inExt.numRows ); if( nbuff ) { ffptbb( outfptr, outloc, 1L, rdlen*nbuff, buffer, status ); outloc += nbuff; } if( infptr==outfptr ) { if( outloc<=inExt.numRows ) ffdrow( infptr, outloc, inExt.numRows-outloc+1, status ); } else if( inExt.heapSize && nGood ) { /* Copy heap, if it exists and at least one row copied */ /********************************************************/ /* Get location information from the output extension */ /********************************************************/ if( outfptr->HDUposition != (outfptr->Fptr)->curhdu ) ffmahd( outfptr, (outfptr->HDUposition) + 1, NULL, status ); outExt.dataStart = (outfptr->Fptr)->datastart; outExt.heapStart = (outfptr->Fptr)->heapstart; /*************************************************/ /* Insert more space into outfptr if necessary */ /*************************************************/ hsize = outExt.heapStart + outExt.heapSize; freespace = (long) (( ( (hsize + 2879) / 2880) * 2880) - hsize); ntodo = inExt.heapSize; if ( (freespace - ntodo) < 0) { /* not enough existing space? */ ntodo = (ntodo - freespace + 2879) / 2880; /* number of blocks */ ffiblk(outfptr, (long) ntodo, 1, status); /* insert the blocks */ } ffukyj( outfptr, "PCOUNT", inExt.heapSize+outExt.heapSize, NULL, status ); /*******************************************************/ /* Get location information from the input extension */ /*******************************************************/ if( infptr->HDUposition != (infptr->Fptr)->curhdu ) ffmahd( infptr, (infptr->HDUposition) + 1, NULL, status ); inExt.dataStart = (infptr->Fptr)->datastart; inExt.heapStart = (infptr->Fptr)->heapstart; /**********************************/ /* Finally copy heap to outfptr */ /**********************************/ ntodo = inExt.heapSize; inbyteloc = inExt.heapStart + inExt.dataStart; outbyteloc = outExt.heapStart + outExt.dataStart + outExt.heapSize; while ( ntodo && !*status ) { rdlen = (long) minvalue(ntodo,500000); ffmbyt( infptr, inbyteloc, REPORT_EOF, status ); ffgbyt( infptr, rdlen, buffer, status ); ffmbyt( outfptr, outbyteloc, IGNORE_EOF, status ); ffpbyt( outfptr, rdlen, buffer, status ); inbyteloc += rdlen; outbyteloc += rdlen; ntodo -= rdlen; } /***********************************************************/ /* But must update DES if data is being appended to a */ /* pre-existing heap space. Edit each new entry in file */ /***********************************************************/ if( outExt.heapSize ) { LONGLONG repeat, offset, j; int i; for( i=1; i<=(outfptr->Fptr)->tfield; i++ ) { if( (outfptr->Fptr)->tableptr[i-1].tdatatype<0 ) { for( j=outExt.numRows+1; j<=outExt.numRows+nGood; j++ ) { ffgdesll( outfptr, i, j, &repeat, &offset, status ); offset += outExt.heapSize; ffpdes( outfptr, i, j, repeat, offset, status ); } } } } } /* End of HEAP copy */ FREE(buffer); } FREE(Info.dataPtr); ffcprs(); ffcmph(outfptr, status); /* compress heap, deleting any orphaned data */ FFUNLOCK; return(*status); } /*---------------------------------------------------------------------------*/ int ffcrow( fitsfile *fptr, /* I - Input FITS file */ int datatype, /* I - Datatype to return results as */ char *expr, /* I - Arithmetic expression */ long firstrow, /* I - First row to evaluate */ long nelements, /* I - Number of elements to return */ void *nulval, /* I - Ptr to value to use as UNDEF */ void *array, /* O - Array of results */ int *anynul, /* O - Were any UNDEFs encountered? */ int *status ) /* O - Error status */ /* */ /* Calculate an expression for the indicated rows of a table, returning */ /* the results, cast as datatype (TSHORT, TDOUBLE, etc), in array. If */ /* nulval==NULL, UNDEFs will be zeroed out. For vector results, the number */ /* of elements returned may be less than nelements if nelements is not an */ /* even multiple of the result dimension. Call fftexp to obtain the */ /* dimensions of the results. */ /*---------------------------------------------------------------------------*/ { parseInfo Info; int naxis; long nelem1, naxes[MAXDIMS]; if( *status ) return( *status ); FFLOCK; if( ffiprs( fptr, 0, expr, MAXDIMS, &Info.datatype, &nelem1, &naxis, naxes, status ) ) { ffcprs(); FFUNLOCK; return( *status ); } if( nelem1<0 ) nelem1 = - nelem1; if( nelements1 ? firstrow : 1); if( datatype ) Info.datatype = datatype; Info.dataPtr = array; Info.nullPtr = nulval; Info.maxRows = nelements / nelem1; if( ffiter( gParse.nCols, gParse.colData, firstrow-1, 0, parse_data, (void*)&Info, status ) == -1 ) *status=0; /* -1 indicates exitted without error before end... OK */ *anynul = Info.anyNull; ffcprs(); FFUNLOCK; return( *status ); } /*--------------------------------------------------------------------------*/ int ffcalc( fitsfile *infptr, /* I - Input FITS file */ char *expr, /* I - Arithmetic expression */ fitsfile *outfptr, /* I - Output fits file */ char *parName, /* I - Name of output parameter */ char *parInfo, /* I - Extra information on parameter */ int *status ) /* O - Error status */ /* */ /* Evaluate an expression for all rows of a table. Call ffcalc_rng with */ /* a row range of 1-MAX. */ { long start=1, end=LONG_MAX; return ffcalc_rng( infptr, expr, outfptr, parName, parInfo, 1, &start, &end, status ); } /*--------------------------------------------------------------------------*/ int ffcalc_rng( fitsfile *infptr, /* I - Input FITS file */ char *expr, /* I - Arithmetic expression */ fitsfile *outfptr, /* I - Output fits file */ char *parName, /* I - Name of output parameter */ char *parInfo, /* I - Extra information on parameter */ int nRngs, /* I - Row range info */ long *start, /* I - Row range info */ long *end, /* I - Row range info */ int *status ) /* O - Error status */ /* */ /* Evaluate an expression using the data in the input FITS file and place */ /* the results into either a column or keyword in the output fits file, */ /* depending on the value of parName (keywords normally prefixed with '#') */ /* and whether the expression evaluates to a constant or a table column. */ /* The logic is as follows: */ /* (1) If a column exists with name, parName, put results there. */ /* (2) If parName starts with '#', as in #NAXIS, put result there, */ /* with parInfo used as the comment. If expression does not evaluate */ /* to a constant, flag an error. */ /* (3) If a keyword exists with name, parName, and expression is a */ /* constant, put result there, using parInfo as the new comment. */ /* (4) Else, create a new column with name parName and TFORM parInfo. */ /* If parInfo is NULL, use a default data type for the column. */ /*--------------------------------------------------------------------------*/ { parseInfo Info; int naxis, constant, typecode, newNullKwd=0; long nelem, naxes[MAXDIMS], repeat, width; int col_cnt, colNo; Node *result; char card[81], tform[16], nullKwd[9], tdimKwd[9]; if( *status ) return( *status ); FFLOCK; if( ffiprs( infptr, 0, expr, MAXDIMS, &Info.datatype, &nelem, &naxis, naxes, status ) ) { ffcprs(); FFUNLOCK; return( *status ); } if( nelem<0 ) { constant = 1; nelem = -nelem; } else constant = 0; /* Case (1): If column exists put it there */ colNo = 0; if( ffgcno( outfptr, CASEINSEN, parName, &colNo, status )==COL_NOT_FOUND ) { /* Output column doesn't exist. Test for keyword. */ /* Case (2): Does parName indicate result should be put into keyword */ *status = 0; if( parName[0]=='#' ) { if( ! constant ) { ffcprs(); ffpmsg( "Cannot put tabular result into keyword (ffcalc)" ); FFUNLOCK; return( *status = PARSE_BAD_TYPE ); } parName++; /* Advance past '#' */ if ( (strcasecmp(parName,"HISTORY") == 0 || strcasecmp(parName,"COMMENT") == 0) && Info.datatype != TSTRING ) { ffcprs(); ffpmsg( "HISTORY and COMMENT values must be strings (ffcalc)" ); FFUNLOCK; return( *status = PARSE_BAD_TYPE ); } } else if( constant ) { /* Case (3): Does a keyword named parName already exist */ if( ffgcrd( outfptr, parName, card, status )==KEY_NO_EXIST ) { colNo = -1; } else if( *status ) { ffcprs(); FFUNLOCK; return( *status ); } } else colNo = -1; if( colNo<0 ) { /* Case (4): Create new column */ *status = 0; ffgncl( outfptr, &colNo, status ); colNo++; if( parInfo==NULL || *parInfo=='\0' ) { /* Figure out best default column type */ if( gParse.hdutype==BINARY_TBL ) { sprintf(tform,"%ld",nelem); switch( Info.datatype ) { case TLOGICAL: strcat(tform,"L"); break; case TLONG: strcat(tform,"J"); break; case TDOUBLE: strcat(tform,"D"); break; case TSTRING: strcat(tform,"A"); break; case TBIT: strcat(tform,"X"); break; case TLONGLONG: strcat(tform,"K"); break; } } else { switch( Info.datatype ) { case TLOGICAL: ffcprs(); ffpmsg("Cannot create LOGICAL column in ASCII table"); FFUNLOCK; return( *status = NOT_BTABLE ); case TLONG: strcpy(tform,"I11"); break; case TDOUBLE: strcpy(tform,"D23.15"); break; case TSTRING: case TBIT: sprintf(tform,"A%ld",nelem); break; } } parInfo = tform; } else if( !(isdigit((int) *parInfo)) && gParse.hdutype==BINARY_TBL ) { if( Info.datatype==TBIT && *parInfo=='B' ) nelem = (nelem+7)/8; sprintf(tform,"%ld%s",nelem,parInfo); parInfo = tform; } fficol( outfptr, colNo, parName, parInfo, status ); if( naxis>1 ) ffptdm( outfptr, colNo, naxis, naxes, status ); /* Setup TNULLn keyword in case NULLs are encountered */ ffkeyn("TNULL", colNo, nullKwd, status); if( ffgcrd( outfptr, nullKwd, card, status )==KEY_NO_EXIST ) { *status = 0; if( gParse.hdutype==BINARY_TBL ) { LONGLONG nullVal=0; fits_binary_tform( parInfo, &typecode, &repeat, &width, status ); if( typecode==TBYTE ) nullVal = UCHAR_MAX; else if( typecode==TSHORT ) nullVal = SHRT_MIN; else if( typecode==TINT ) nullVal = INT_MIN; else if( typecode==TLONG ) nullVal = LONG_MIN; else if( typecode==TLONGLONG ) nullVal = LONGLONG_MIN; if( nullVal ) { ffpkyj( outfptr, nullKwd, nullVal, "Null value", status ); fits_set_btblnull( outfptr, colNo, nullVal, status ); newNullKwd = 1; } } else if( gParse.hdutype==ASCII_TBL ) { ffpkys( outfptr, nullKwd, "NULL", "Null value string", status ); fits_set_atblnull( outfptr, colNo, "NULL", status ); newNullKwd = 1; } } } } else if( *status ) { ffcprs(); FFUNLOCK; return( *status ); } else { /********************************************************/ /* Check if a TDIM keyword should be written/updated. */ /********************************************************/ ffkeyn("TDIM", colNo, tdimKwd, status); ffgcrd( outfptr, tdimKwd, card, status ); if( *status==0 ) { /* TDIM exists, so update it with result's dimension */ ffptdm( outfptr, colNo, naxis, naxes, status ); } else if( *status==KEY_NO_EXIST ) { /* TDIM does not exist, so clear error stack and */ /* write a TDIM only if result is multi-dimensional */ *status = 0; ffcmsg(); if( naxis>1 ) ffptdm( outfptr, colNo, naxis, naxes, status ); } if( *status ) { /* Either some other error happened in ffgcrd */ /* or one happened in ffptdm */ ffcprs(); FFUNLOCK; return( *status ); } } if( colNo>0 ) { /* Output column exists (now)... put results into it */ int anyNull = 0; int nPerLp, i; long totaln; ffgkyj(infptr, "NAXIS2", &totaln, 0, status); /*************************************/ /* Create new iterator Output Column */ /*************************************/ col_cnt = gParse.nCols; if( allocateCol( col_cnt, status ) ) { ffcprs(); FFUNLOCK; return( *status ); } fits_iter_set_by_num( gParse.colData+col_cnt, outfptr, colNo, 0, OutputCol ); gParse.nCols++; for( i=0; i= 10) && (nRngs == 1) && (start[0] == 1) && (end[0] == totaln)) nPerLp = 0; else nPerLp = Info.maxRows; if( ffiter( gParse.nCols, gParse.colData, start[i]-1, nPerLp, parse_data, (void*)&Info, status ) == -1 ) *status = 0; else if( *status ) { ffcprs(); FFUNLOCK; return( *status ); } if( Info.anyNull ) anyNull = 1; } if( newNullKwd && !anyNull ) { ffdkey( outfptr, nullKwd, status ); } } else { /* Put constant result into keyword */ result = gParse.Nodes + gParse.resultNode; switch( Info.datatype ) { case TDOUBLE: ffukyd( outfptr, parName, result->value.data.dbl, 15, parInfo, status ); break; case TLONG: ffukyj( outfptr, parName, result->value.data.lng, parInfo, status ); break; case TLOGICAL: ffukyl( outfptr, parName, result->value.data.log, parInfo, status ); break; case TBIT: case TSTRING: if (strcasecmp(parName,"HISTORY") == 0) { ffphis( outfptr, result->value.data.str, status); } else if (strcasecmp(parName,"COMMENT") == 0) { ffpcom( outfptr, result->value.data.str, status); } else { ffukys( outfptr, parName, result->value.data.str, parInfo, status ); } break; } } ffcprs(); FFUNLOCK; return( *status ); } /*--------------------------------------------------------------------------*/ int fftexp( fitsfile *fptr, /* I - Input FITS file */ char *expr, /* I - Arithmetic expression */ int maxdim, /* I - Max Dimension of naxes */ int *datatype, /* O - Data type of result */ long *nelem, /* O - Vector length of result */ int *naxis, /* O - # of dimensions of result */ long *naxes, /* O - Size of each dimension */ int *status ) /* O - Error status */ /* */ /* Evaluate the given expression and return information on the result. */ /*--------------------------------------------------------------------------*/ { FFLOCK; ffiprs( fptr, 0, expr, maxdim, datatype, nelem, naxis, naxes, status ); ffcprs(); FFUNLOCK; return( *status ); } /*--------------------------------------------------------------------------*/ int ffiprs( fitsfile *fptr, /* I - Input FITS file */ int compressed, /* I - Is FITS file hkunexpanded? */ char *expr, /* I - Arithmetic expression */ int maxdim, /* I - Max Dimension of naxes */ int *datatype, /* O - Data type of result */ long *nelem, /* O - Vector length of result */ int *naxis, /* O - # of dimensions of result */ long *naxes, /* O - Size of each dimension */ int *status ) /* O - Error status */ /* */ /* Initialize the parser and determine what type of result the expression */ /* produces. */ /*--------------------------------------------------------------------------*/ { Node *result; int i,lexpr, tstatus = 0; int xaxis, bitpix; long xaxes[9]; static iteratorCol dmyCol; if( *status ) return( *status ); /* make sure all internal structures for this HDU are current */ if ( ffrdef(fptr, status) ) return(*status); /* Initialize the Parser structure */ gParse.def_fptr = fptr; gParse.compressed = compressed; gParse.nCols = 0; gParse.colData = NULL; gParse.varData = NULL; gParse.getData = find_column; gParse.loadData = load_column; gParse.Nodes = NULL; gParse.nNodesAlloc= 0; gParse.nNodes = 0; gParse.hdutype = 0; gParse.status = 0; fits_get_hdu_type(fptr, &gParse.hdutype, status ); if (gParse.hdutype == IMAGE_HDU) { fits_get_img_param(fptr, 9, &bitpix, &xaxis, xaxes, status); if (*status) { ffpmsg("ffiprs: unable to get image dimensions"); return( *status ); } gParse.totalRows = xaxis > 0 ? 1 : 0; for (i = 0; i < xaxis; ++i) gParse.totalRows *= xaxes[i]; if (DEBUG_PIXFILTER) printf("naxis=%d, gParse.totalRows=%ld\n", xaxis, gParse.totalRows); } else if( ffgkyj(fptr, "NAXIS2", &gParse.totalRows, 0, &tstatus) ) { /* this might be a 1D or null image with no NAXIS2 keyword */ gParse.totalRows = 0; } /* Copy expression into parser... read from file if necessary */ if( expr[0]=='@' ) { if( ffimport_file( expr+1, &gParse.expr, status ) ) return( *status ); lexpr = strlen(gParse.expr); } else { lexpr = strlen(expr); gParse.expr = (char*)malloc( (2+lexpr)*sizeof(char)); strcpy(gParse.expr,expr); } strcat(gParse.expr + lexpr,"\n"); gParse.index = 0; gParse.is_eobuf = 0; /* Parse the expression, building the Nodes and determing */ /* which columns are needed and what data type is returned */ ffrestart(NULL); if( ffparse() ) { return( *status = PARSE_SYNTAX_ERR ); } /* Check results */ *status = gParse.status; if( *status ) return(*status); if( !gParse.nNodes ) { ffpmsg("Blank expression"); return( *status = PARSE_SYNTAX_ERR ); } if( !gParse.nCols ) { dmyCol.fptr = fptr; /* This allows iterator to know value of */ gParse.colData = &dmyCol; /* fptr when no columns are referenced */ } result = gParse.Nodes + gParse.resultNode; *naxis = result->value.naxis; *nelem = result->value.nelem; for( i=0; i<*naxis && ivalue.naxes[i]; switch( result->type ) { case BOOLEAN: *datatype = TLOGICAL; break; case LONG: *datatype = TLONG; break; case DOUBLE: *datatype = TDOUBLE; break; case BITSTR: *datatype = TBIT; break; case STRING: *datatype = TSTRING; break; default: *datatype = 0; ffpmsg("Bad return data type"); *status = gParse.status = PARSE_BAD_TYPE; break; } gParse.datatype = *datatype; FREE(gParse.expr); if( result->operation==CONST_OP ) *nelem = - *nelem; return(*status); } /*--------------------------------------------------------------------------*/ void ffcprs( void ) /* No parameters */ /* */ /* Clear the parser, making it ready to accept a new expression. */ /*--------------------------------------------------------------------------*/ { int col, node, i; if( gParse.nCols > 0 ) { FREE( gParse.colData ); for( col=0; col 0 ) { node = gParse.nNodes; while( node-- ) { if( gParse.Nodes[node].operation==gtifilt_fct ) { i = gParse.Nodes[node].SubNodes[0]; if (gParse.Nodes[ i ].value.data.ptr) FREE( gParse.Nodes[ i ].value.data.ptr ); } else if( gParse.Nodes[node].operation==regfilt_fct ) { i = gParse.Nodes[node].SubNodes[0]; fits_free_region( (SAORegion *)gParse.Nodes[ i ].value.data.ptr ); } } gParse.nNodes = 0; } if( gParse.Nodes ) free( gParse.Nodes ); gParse.Nodes = NULL; gParse.hdutype = ANY_HDU; gParse.pixFilter = 0; } /*---------------------------------------------------------------------------*/ int parse_data( long totalrows, /* I - Total rows to be processed */ long offset, /* I - Number of rows skipped at start*/ long firstrow, /* I - First row of this iteration */ long nrows, /* I - Number of rows in this iter */ int nCols, /* I - Number of columns in use */ iteratorCol *colData, /* IO- Column information/data */ void *userPtr ) /* I - Data handling instructions */ /* */ /* Iterator work function which calls the parser and copies the results */ /* into either an OutputCol or a data pointer supplied in the userPtr */ /* structure. */ /*---------------------------------------------------------------------------*/ { int status, constant=0, anyNullThisTime=0; long jj, kk, idx, remain, ntodo; Node *result; iteratorCol * outcol; /* declare variables static to preserve their values between calls */ static void *Data, *Null; static int datasize; static long lastRow, repeat, resDataSize; static LONGLONG jnull; static parseInfo *userInfo; static long zeros[4] = {0,0,0,0}; if (DEBUG_PIXFILTER) printf("parse_data(total=%ld, offset=%ld, first=%ld, rows=%ld, cols=%d)\n", totalrows, offset, firstrow, nrows, nCols); /*--------------------------------------------------------*/ /* Initialization procedures: execute on the first call */ /*--------------------------------------------------------*/ outcol = colData + (nCols - 1); if (firstrow == offset+1) { userInfo = (parseInfo*)userPtr; userInfo->anyNull = 0; if( userInfo->maxRows>0 ) userInfo->maxRows = minvalue(totalrows,userInfo->maxRows); else if( userInfo->maxRows<0 ) userInfo->maxRows = totalrows; else userInfo->maxRows = nrows; lastRow = firstrow + userInfo->maxRows - 1; if( userInfo->dataPtr==NULL ) { if( outcol->iotype == InputCol ) { ffpmsg("Output column for parser results not found!"); return( PARSE_NO_OUTPUT ); } /* Data gets set later */ Null = outcol->array; userInfo->datatype = outcol->datatype; /* Check for a TNULL/BLANK keyword for output column/image */ status = 0; jnull = 0; if (gParse.hdutype == IMAGE_HDU) { if (gParse.pixFilter->blank) jnull = (LONGLONG) gParse.pixFilter->blank; } else { ffgknjj( outcol->fptr, "TNULL", outcol->colnum, 1, &jnull, (int*)&jj, &status ); if( status==BAD_INTKEY ) { /* Probably ASCII table with text TNULL keyword */ switch( userInfo->datatype ) { case TSHORT: jnull = (LONGLONG) SHRT_MIN; break; case TINT: jnull = (LONGLONG) INT_MIN; break; case TLONG: jnull = (LONGLONG) LONG_MIN; break; } } } repeat = outcol->repeat; /* if (DEBUG_PIXFILTER) printf("parse_data: using null value %ld\n", jnull); */ } else { Data = userInfo->dataPtr; Null = (userInfo->nullPtr ? userInfo->nullPtr : zeros); repeat = gParse.Nodes[gParse.resultNode].value.nelem; } /* Determine the size of each element of the returned result */ switch( userInfo->datatype ) { case TBIT: /* Fall through to TBYTE */ case TLOGICAL: /* Fall through to TBYTE */ case TBYTE: datasize = sizeof(char); break; case TSHORT: datasize = sizeof(short); break; case TINT: datasize = sizeof(int); break; case TLONG: datasize = sizeof(long); break; case TLONGLONG: datasize = sizeof(LONGLONG); break; case TFLOAT: datasize = sizeof(float); break; case TDOUBLE: datasize = sizeof(double); break; case TSTRING: datasize = sizeof(char*); break; } /* Determine the size of each element of the calculated result */ /* (only matters for numeric/logical data) */ switch( gParse.Nodes[gParse.resultNode].type ) { case BOOLEAN: resDataSize = sizeof(char); break; case LONG: resDataSize = sizeof(long); break; case DOUBLE: resDataSize = sizeof(double); break; } } /*-------------------------------------------*/ /* Main loop: process all the rows of data */ /*-------------------------------------------*/ /* If writing to output column, set first element to appropriate */ /* null value. If no NULLs encounter, zero out before returning. */ /* if (DEBUG_PIXFILTER) printf("parse_data: using null value %ld\n", jnull); */ if( userInfo->dataPtr == NULL ) { /* First, reset Data pointer to start of output array */ Data = (char*) outcol->array + datasize; switch( userInfo->datatype ) { case TLOGICAL: *(char *)Null = 'U'; break; case TBYTE: *(char *)Null = (char )jnull; break; case TSHORT: *(short *)Null = (short)jnull; break; case TINT: *(int *)Null = (int )jnull; break; case TLONG: *(long *)Null = (long )jnull; break; case TLONGLONG: *(LONGLONG *)Null = (LONGLONG )jnull; break; case TFLOAT: *(float *)Null = FLOATNULLVALUE; break; case TDOUBLE: *(double*)Null = DOUBLENULLVALUE; break; case TSTRING: (*(char **)Null)[0] = '\1'; (*(char **)Null)[1] = '\0'; break; } } /* Alter nrows in case calling routine didn't want to do all rows */ nrows = minvalue(nrows,lastRow-firstrow+1); Setup_DataArrays( nCols, colData, firstrow, nrows ); /* Parser allocates arrays for each column and calculation it performs. */ /* Limit number of rows processed during each pass to reduce memory */ /* requirements... In most cases, iterator will limit rows to less */ /* than 2500 rows per iteration, so this is really only relevant for */ /* hk-compressed files which must be decompressed in memory and sent */ /* whole to parse_data in a single iteration. */ remain = nrows; while( remain ) { ntodo = minvalue(remain,2500); Evaluate_Parser ( firstrow, ntodo ); if( gParse.status ) break; firstrow += ntodo; remain -= ntodo; /* Copy results into data array */ result = gParse.Nodes + gParse.resultNode; if( result->operation==CONST_OP ) constant = 1; switch( result->type ) { case BOOLEAN: case LONG: case DOUBLE: if( constant ) { char undef=0; for( kk=0; kkvalue.data), &undef, result->value.nelem /* 1 */, userInfo->datatype, Null, (char*)Data + (kk*repeat+jj)*datasize, &anyNullThisTime, &gParse.status ); } else { if ( repeat == result->value.nelem ) { ffcvtn( gParse.datatype, result->value.data.ptr, result->value.undef, result->value.nelem*ntodo, userInfo->datatype, Null, Data, &anyNullThisTime, &gParse.status ); } else if( result->value.nelem == 1 ) { for( kk=0; kkvalue.data.ptr + kk*resDataSize, (char*)result->value.undef + kk, 1, userInfo->datatype, Null, (char*)Data + (kk*repeat+jj)*datasize, &anyNullThisTime, &gParse.status ); } } else { int nCopy; nCopy = minvalue( repeat, result->value.nelem ); for( kk=0; kkvalue.data.ptr + kk*result->value.nelem*resDataSize, (char*)result->value.undef + kk*result->value.nelem, nCopy, userInfo->datatype, Null, (char*)Data + (kk*repeat)*datasize, &anyNullThisTime, &gParse.status ); if( nCopy < repeat ) { memset( (char*)Data + (kk*repeat+nCopy)*datasize, 0, (repeat-nCopy)*datasize); } } } if( result->operation>0 ) { FREE( result->value.data.ptr ); } } if( gParse.status==OVERFLOW_ERR ) { gParse.status = NUM_OVERFLOW; ffpmsg("Numerical overflow while converting expression to necessary datatype"); } break; case BITSTR: switch( userInfo->datatype ) { case TBYTE: idx = -1; for( kk=0; kkvalue.nelem; jj++ ) { if( jj%8 == 0 ) ((char*)Data)[++idx] = 0; if( constant ) { if( result->value.data.str[jj]=='1' ) ((char*)Data)[idx] |= 128>>(jj%8); } else { if( result->value.data.strptr[kk][jj]=='1' ) ((char*)Data)[idx] |= 128>>(jj%8); } } } break; case TBIT: case TLOGICAL: if( constant ) { for( kk=0; kkvalue.nelem; jj++ ) { ((char*)Data)[ jj+kk*result->value.nelem ] = ( result->value.data.str[jj]=='1' ); } } else { for( kk=0; kkvalue.nelem; jj++ ) { ((char*)Data)[ jj+kk*result->value.nelem ] = ( result->value.data.strptr[kk][jj]=='1' ); } } break; case TSTRING: if( constant ) { for( jj=0; jjvalue.data.str ); } } else { for( jj=0; jjvalue.data.strptr[jj] ); } } break; default: ffpmsg("Cannot convert bit expression to desired type."); gParse.status = PARSE_BAD_TYPE; break; } if( result->operation>0 ) { FREE( result->value.data.strptr[0] ); FREE( result->value.data.strptr ); } break; case STRING: if( userInfo->datatype==TSTRING ) { if( constant ) { for( jj=0; jjvalue.data.str ); } else { for( jj=0; jjvalue.undef[jj] ) { anyNullThisTime = 1; strcpy( ((char**)Data)[jj], *(char **)Null ); } else { strcpy( ((char**)Data)[jj], result->value.data.strptr[jj] ); } } } else { ffpmsg("Cannot convert string expression to desired type."); gParse.status = PARSE_BAD_TYPE; } if( result->operation>0 ) { FREE( result->value.data.strptr[0] ); FREE( result->value.data.strptr ); } break; } if( gParse.status ) break; /* Increment Data to point to where the next block should go */ if( result->type==BITSTR && userInfo->datatype==TBYTE ) Data = (char*)Data + datasize * ( (result->value.nelem+7)/8 ) * ntodo; else if( result->type==STRING ) Data = (char*)Data + datasize * ntodo; else Data = (char*)Data + datasize * ntodo * repeat; } /* If no NULLs encountered during this pass, set Null value to */ /* zero to make the writing of the output column data faster */ if( anyNullThisTime ) userInfo->anyNull = 1; else if( userInfo->dataPtr == NULL ) { if( userInfo->datatype == TSTRING ) memcpy( *(char **)Null, zeros, 2 ); else memcpy( Null, zeros, datasize ); } /*-------------------------------------------------------*/ /* Clean up procedures: after processing all the rows */ /*-------------------------------------------------------*/ /* if the calling routine specified that only a limited number */ /* of rows in the table should be processed, return a value of -1 */ /* once all the rows have been done, if no other error occurred. */ if (gParse.hdutype != IMAGE_HDU && firstrow - 1 == lastRow) { if (!gParse.status && userInfo->maxRowsiotype == OutputCol ) continue; nelem = varData->nelem; len = nelem * nRows; switch ( varData->type ) { case BITSTR: /* No need for UNDEF array, but must make string DATA array */ len = (nelem+1)*nRows; /* Count '\0' */ bitStrs = (char**)varData->data; if( bitStrs ) FREE( bitStrs[0] ); free( bitStrs ); bitStrs = (char**)malloc( nRows*sizeof(char*) ); if( bitStrs==NULL ) { varData->data = varData->undef = NULL; gParse.status = MEMORY_ALLOCATION; break; } bitStrs[0] = (char*)malloc( len*sizeof(char) ); if( bitStrs[0]==NULL ) { free( bitStrs ); varData->data = varData->undef = NULL; gParse.status = MEMORY_ALLOCATION; break; } for( row=0; rowarray)[idx] & (1<<(7-len%8)) ) bitStrs[row][len] = '1'; else bitStrs[row][len] = '0'; if( len%8==7 ) idx++; } bitStrs[row][len] = '\0'; } varData->undef = (char*)bitStrs; varData->data = (char*)bitStrs; break; case STRING: sptr = (char**)icol->array; if (varData->undef) free( varData->undef ); varData->undef = (char*)malloc( nRows*sizeof(char) ); if( varData->undef==NULL ) { gParse.status = MEMORY_ALLOCATION; break; } row = nRows; while( row-- ) varData->undef[row] = ( **sptr != '\0' && FSTRCMP( sptr[0], sptr[row+1] )==0 ); varData->data = sptr + 1; break; case BOOLEAN: barray = (char*)icol->array; if (varData->undef) free( varData->undef ); varData->undef = (char*)malloc( len*sizeof(char) ); if( varData->undef==NULL ) { gParse.status = MEMORY_ALLOCATION; break; } while( len-- ) { varData->undef[len] = ( barray[0]!=0 && barray[0]==barray[len+1] ); } varData->data = barray + 1; break; case LONG: iarray = (long*)icol->array; if (varData->undef) free( varData->undef ); varData->undef = (char*)malloc( len*sizeof(char) ); if( varData->undef==NULL ) { gParse.status = MEMORY_ALLOCATION; break; } while( len-- ) { varData->undef[len] = ( iarray[0]!=0L && iarray[0]==iarray[len+1] ); } varData->data = iarray + 1; break; case DOUBLE: rarray = (double*)icol->array; if (varData->undef) free( varData->undef ); varData->undef = (char*)malloc( len*sizeof(char) ); if( varData->undef==NULL ) { gParse.status = MEMORY_ALLOCATION; break; } while( len-- ) { varData->undef[len] = ( rarray[0]!=0.0 && rarray[0]==rarray[len+1]); } varData->data = rarray + 1; break; default: sprintf(msg, "SetupDataArrays, unhandled type %d\n", varData->type); ffpmsg(msg); } if( gParse.status ) { /* Deallocate NULL arrays of previous columns */ while( i-- ) { varData = gParse.varData + i; if( varData->type==BITSTR ) FREE( ((char**)varData->data)[0] ); FREE( varData->undef ); varData->undef = NULL; } return; } } } /*--------------------------------------------------------------------------*/ int ffcvtn( int inputType, /* I - Data type of input array */ void *input, /* I - Input array of type inputType */ char *undef, /* I - Array of flags indicating UNDEF elems */ long ntodo, /* I - Number of elements to process */ int outputType, /* I - Data type of output array */ void *nulval, /* I - Ptr to value to use for UNDEF elements */ void *output, /* O - Output array of type outputType */ int *anynull, /* O - Any nulls flagged? */ int *status ) /* O - Error status */ /* */ /* Convert an array of any input data type to an array of any output */ /* data type, using an array of UNDEF flags to assign nulvals to */ /*--------------------------------------------------------------------------*/ { long i; switch( outputType ) { case TLOGICAL: switch( inputType ) { case TLOGICAL: case TBYTE: for( i=0; i UCHAR_MAX ) { *status = OVERFLOW_ERR; ((unsigned char*)output)[i] = UCHAR_MAX; } else ((unsigned char*)output)[i] = (unsigned char) ((long*)input)[i]; } } return( *status ); case TFLOAT: fffr4i1((float*)input,ntodo,1.,0.,0,0,NULL,NULL, (unsigned char*)output,status); break; case TDOUBLE: fffr8i1((double*)input,ntodo,1.,0.,0,0,NULL,NULL, (unsigned char*)output,status); break; default: *status = BAD_DATATYPE; break; } for(i=0;i SHRT_MAX ) { *status = OVERFLOW_ERR; ((short*)output)[i] = SHRT_MAX; } else ((short*)output)[i] = (short) ((long*)input)[i]; } } return( *status ); case TFLOAT: fffr4i2((float*)input,ntodo,1.,0.,0,0,NULL,NULL, (short*)output,status); break; case TDOUBLE: fffr8i2((double*)input,ntodo,1.,0.,0,0,NULL,NULL, (short*)output,status); break; default: *status = BAD_DATATYPE; break; } for(i=0;i=0 ) { found[parNo] = 1; /* Flag this parameter as found */ switch( gParse.colData[parNo].datatype ) { case TLONG: ffgcvj( fptr, gParse.valCol, row, 1L, 1L, ((long*)gParse.colData[parNo].array)[0], ((long*)gParse.colData[parNo].array)+currelem, &anynul, status ); break; case TDOUBLE: ffgcvd( fptr, gParse.valCol, row, 1L, 1L, ((double*)gParse.colData[parNo].array)[0], ((double*)gParse.colData[parNo].array)+currelem, &anynul, status ); break; case TSTRING: ffgcvs( fptr, gParse.valCol, row, 1L, 1L, ((char**)gParse.colData[parNo].array)[0], ((char**)gParse.colData[parNo].array)+currelem, &anynul, status ); break; } if( *status ) return( *status ); } } if( currelemoperation==CONST_OP ) { if( result->value.data.log ) { *(long*)userPtr = firstrow; return( -1 ); } } else { for( idx=0; idxvalue.data.logptr[idx] && !result->value.undef[idx] ) { *(long*)userPtr = firstrow + idx; return( -1 ); } } } return( gParse.status ); } static int set_image_col_types (fitsfile * fptr, const char * name, int bitpix, DataInfo * varInfo, iteratorCol *colIter) { int istatus; double tscale, tzero; char temp[80]; switch (bitpix) { case BYTE_IMG: case SHORT_IMG: case LONG_IMG: istatus = 0; if (fits_read_key(fptr, TDOUBLE, "BZERO", &tzero, NULL, &istatus)) tzero = 0.0; istatus = 0; if (fits_read_key(fptr, TDOUBLE, "BSCALE", &tscale, NULL, &istatus)) tscale = 1.0; if (tscale == 1.0 && (tzero == 0.0 || tzero == 32768.0 )) { varInfo->type = LONG; colIter->datatype = TLONG; } else { varInfo->type = DOUBLE; colIter->datatype = TDOUBLE; if (DEBUG_PIXFILTER) printf("use DOUBLE for %s with BSCALE=%g/BZERO=%g\n", name, tscale, tzero); } break; case LONGLONG_IMG: case FLOAT_IMG: case DOUBLE_IMG: varInfo->type = DOUBLE; colIter->datatype = TDOUBLE; break; default: sprintf(temp, "set_image_col_types: unrecognized image bitpix [%d]\n", bitpix); ffpmsg(temp); return gParse.status = PARSE_BAD_TYPE; } return 0; } /************************************************************************* Functions used by the evaluator to access FITS data (find_column, find_keywd, allocateCol, load_column) *************************************************************************/ static int find_column( char *colName, void *itslval ) { FFSTYPE *thelval = (FFSTYPE*)itslval; int col_cnt, status; int colnum, typecode, type; long repeat, width; fitsfile *fptr; char temp[80]; double tzero,tscale; int istatus; DataInfo *varInfo; iteratorCol *colIter; if (DEBUG_PIXFILTER) printf("find_column(%s)\n", colName); if( *colName == '#' ) return( find_keywd( colName + 1, itslval ) ); fptr = gParse.def_fptr; status = 0; col_cnt = gParse.nCols; if (gParse.hdutype == IMAGE_HDU) { int i; if (!gParse.pixFilter) { gParse.status = COL_NOT_FOUND; ffpmsg("find_column: IMAGE_HDU but no PixelFilter"); return pERROR; } colnum = -1; for (i = 0; i < gParse.pixFilter->count; ++i) { if (!strcasecmp(colName, gParse.pixFilter->tag[i])) colnum = i; } if (colnum < 0) { sprintf(temp, "find_column: PixelFilter tag %s not found", colName); ffpmsg(temp); gParse.status = COL_NOT_FOUND; return pERROR; } if( allocateCol( col_cnt, &gParse.status ) ) return pERROR; varInfo = gParse.varData + col_cnt; colIter = gParse.colData + col_cnt; fptr = gParse.pixFilter->ifptr[colnum]; fits_get_img_param(fptr, MAXDIMS, &typecode, /* actually bitpix */ &varInfo->naxis, &varInfo->naxes[0], &status); varInfo->nelem = 1; type = COLUMN; if (set_image_col_types(fptr, colName, typecode, varInfo, colIter)) return pERROR; colIter->fptr = fptr; colIter->iotype = InputCol; } else { /* HDU holds a table */ if( gParse.compressed ) colnum = gParse.valCol; else if( fits_get_colnum( fptr, CASEINSEN, colName, &colnum, &status ) ) { if( status == COL_NOT_FOUND ) { type = find_keywd( colName, itslval ); if( type != pERROR ) ffcmsg(); return( type ); } gParse.status = status; return pERROR; } if( fits_get_coltype( fptr, colnum, &typecode, &repeat, &width, &status ) ) { gParse.status = status; return pERROR; } if( allocateCol( col_cnt, &gParse.status ) ) return pERROR; varInfo = gParse.varData + col_cnt; colIter = gParse.colData + col_cnt; fits_iter_set_by_num( colIter, fptr, colnum, 0, InputCol ); } /* Make sure we don't overflow variable name array */ strncpy(varInfo->name,colName,MAXVARNAME); varInfo->name[MAXVARNAME] = '\0'; if (gParse.hdutype != IMAGE_HDU) { switch( typecode ) { case TBIT: varInfo->type = BITSTR; colIter->datatype = TBYTE; type = BITCOL; break; case TBYTE: case TSHORT: case TLONG: /* The datatype of column with TZERO and TSCALE keywords might be float or double. */ sprintf(temp,"TZERO%d",colnum); istatus = 0; if(fits_read_key(fptr,TDOUBLE,temp,&tzero,NULL,&istatus)) { tzero = 0.0; } sprintf(temp,"TSCAL%d",colnum); istatus = 0; if(fits_read_key(fptr,TDOUBLE,temp,&tscale,NULL,&istatus)) { tscale = 1.0; } if (tscale == 1.0 && (tzero == 0.0 || tzero == 32768.0 )) { varInfo->type = LONG; colIter->datatype = TLONG; /* Reading an unsigned long column as a long can cause overflow errors. Treat the column as a double instead. } else if (tscale == 1.0 && tzero == 2147483648.0 ) { varInfo->type = LONG; colIter->datatype = TULONG; */ } else { varInfo->type = DOUBLE; colIter->datatype = TDOUBLE; } type = COLUMN; break; /* For now, treat 8-byte integer columns as type double. This can lose precision, so the better long term solution will be to add support for TLONGLONG as a separate datatype. */ case TLONGLONG: case TFLOAT: case TDOUBLE: varInfo->type = DOUBLE; colIter->datatype = TDOUBLE; type = COLUMN; break; case TLOGICAL: varInfo->type = BOOLEAN; colIter->datatype = TLOGICAL; type = BCOLUMN; break; case TSTRING: varInfo->type = STRING; colIter->datatype = TSTRING; type = SCOLUMN; if ( width >= MAX_STRLEN ) { sprintf(temp, "column %d is wider than maximum %d characters", colnum, MAX_STRLEN-1); ffpmsg(temp); gParse.status = PARSE_LRG_VECTOR; return pERROR; } if( gParse.hdutype == ASCII_TBL ) repeat = width; break; default: if (typecode < 0) { sprintf(temp, "variable-length array columns are not supported. typecode = %d", typecode); ffpmsg(temp); } gParse.status = PARSE_BAD_TYPE; return pERROR; } varInfo->nelem = repeat; if( repeat>1 && typecode!=TSTRING ) { if( fits_read_tdim( fptr, colnum, MAXDIMS, &varInfo->naxis, &varInfo->naxes[0], &status ) ) { gParse.status = status; return pERROR; } } else { varInfo->naxis = 1; varInfo->naxes[0] = 1; } } gParse.nCols++; thelval->lng = col_cnt; return( type ); } static int find_keywd(char *keyname, void *itslval ) { FFSTYPE *thelval = (FFSTYPE*)itslval; int status, type; char keyvalue[FLEN_VALUE], dtype; fitsfile *fptr; double rval; int bval; long ival; status = 0; fptr = gParse.def_fptr; if( fits_read_keyword( fptr, keyname, keyvalue, NULL, &status ) ) { if( status == KEY_NO_EXIST ) { /* Do this since ffgkey doesn't put an error message on stack */ sprintf(keyvalue, "ffgkey could not find keyword: %s",keyname); ffpmsg(keyvalue); } gParse.status = status; return( pERROR ); } if( fits_get_keytype( keyvalue, &dtype, &status ) ) { gParse.status = status; return( pERROR ); } switch( dtype ) { case 'C': fits_read_key_str( fptr, keyname, keyvalue, NULL, &status ); type = STRING; strcpy( thelval->str , keyvalue ); break; case 'L': fits_read_key_log( fptr, keyname, &bval, NULL, &status ); type = BOOLEAN; thelval->log = bval; break; case 'I': fits_read_key_lng( fptr, keyname, &ival, NULL, &status ); type = LONG; thelval->lng = ival; break; case 'F': fits_read_key_dbl( fptr, keyname, &rval, NULL, &status ); type = DOUBLE; thelval->dbl = rval; break; default: type = pERROR; break; } if( status ) { gParse.status=status; return pERROR; } return( type ); } static int allocateCol( int nCol, int *status ) { if( (nCol%25)==0 ) { if( nCol ) { gParse.colData = (iteratorCol*) realloc( gParse.colData, (nCol+25)*sizeof(iteratorCol) ); gParse.varData = (DataInfo *) realloc( gParse.varData, (nCol+25)*sizeof(DataInfo) ); } else { gParse.colData = (iteratorCol*) malloc( 25*sizeof(iteratorCol) ); gParse.varData = (DataInfo *) malloc( 25*sizeof(DataInfo) ); } if( gParse.colData == NULL || gParse.varData == NULL ) { if( gParse.colData ) free(gParse.colData); if( gParse.varData ) free(gParse.varData); gParse.colData = NULL; gParse.varData = NULL; return( *status = MEMORY_ALLOCATION ); } } gParse.varData[nCol].data = NULL; gParse.varData[nCol].undef = NULL; return 0; } static int load_column( int varNum, long fRow, long nRows, void *data, char *undef ) { iteratorCol *var = gParse.colData+varNum; long nelem,nbytes,row,len,idx; char **bitStrs, msg[80]; unsigned char *bytes; int status = 0, anynul; if (gParse.hdutype == IMAGE_HDU) { /* This test would need to be on a per varNum basis to support * cross HDU operations */ fits_read_imgnull(var->fptr, var->datatype, fRow, nRows, data, undef, &anynul, &status); if (DEBUG_PIXFILTER) printf("load_column: IMAGE_HDU fRow=%ld, nRows=%ld => %d\n", fRow, nRows, status); } else { nelem = nRows * var->repeat; switch( var->datatype ) { case TBYTE: nbytes = ((var->repeat+7)/8) * nRows; bytes = (unsigned char *)malloc( nbytes * sizeof(char) ); ffgcvb(var->fptr, var->colnum, fRow, 1L, nbytes, 0, bytes, &anynul, &status); nelem = var->repeat; bitStrs = (char **)data; for( row=0; rowfptr, var->colnum, fRow, 1L, nRows, (char **)data, undef, &anynul, &status); break; case TLOGICAL: ffgcfl(var->fptr, var->colnum, fRow, 1L, nelem, (char *)data, undef, &anynul, &status); break; case TLONG: ffgcfj(var->fptr, var->colnum, fRow, 1L, nelem, (long *)data, undef, &anynul, &status); break; case TDOUBLE: ffgcfd(var->fptr, var->colnum, fRow, 1L, nelem, (double *)data, undef, &anynul, &status); break; default: sprintf(msg,"load_column: unexpected datatype %d", var->datatype); ffpmsg(msg); } } if( status ) { gParse.status = status; return pERROR; } return 0; } /*--------------------------------------------------------------------------*/ int fits_pixel_filter (PixelFilter * filter, int * status) /* Evaluate an expression using the data in the input FITS file(s) */ /*--------------------------------------------------------------------------*/ { parseInfo Info = { 0 }; int naxis, bitpix; long nelem, naxes[MAXDIMS]; int col_cnt; Node *result; int datatype; fitsfile * infptr; fitsfile * outfptr; char * DEFAULT_TAGS[] = { "X" }; char msg[256]; int writeBlankKwd = 0; /* write BLANK if any output nulls? */ DEBUG_PIXFILTER = getenv("DEBUG_PIXFILTER") ? 1 : 0; if (*status) return (*status); FFLOCK; if (!filter->tag || !filter->tag[0] || !filter->tag[0][0]) { filter->tag = DEFAULT_TAGS; if (DEBUG_PIXFILTER) printf("using default tag '%s'\n", filter->tag[0]); } infptr = filter->ifptr[0]; outfptr = filter->ofptr; gParse.pixFilter = filter; if (ffiprs(infptr, 0, filter->expression, MAXDIMS, &Info.datatype, &nelem, &naxis, naxes, status)) { goto CLEANUP; } if (nelem < 0) { nelem = -nelem; } { /* validate result type */ const char * type = 0; switch (Info.datatype) { case TLOGICAL: type = "LOGICAL"; break; case TLONG: type = "LONG"; break; case TDOUBLE: type = "DOUBLE"; break; case TSTRING: type = "STRING"; *status = pERROR; ffpmsg("pixel_filter: cannot have string image"); case TBIT: type = "BIT"; if (DEBUG_PIXFILTER) printf("hmm, image from bits?\n"); break; default: type = "UNKNOWN?!"; *status = pERROR; ffpmsg("pixel_filter: unexpected result datatype"); } if (DEBUG_PIXFILTER) printf("result type is %s [%d]\n", type, Info.datatype); if (*status) goto CLEANUP; } if (fits_get_img_param(infptr, MAXDIMS, &bitpix, &naxis, &naxes[0], status)) { ffpmsg("pixel_filter: unable to read input image parameters"); goto CLEANUP; } if (DEBUG_PIXFILTER) printf("input bitpix %d\n", bitpix); if (Info.datatype == TDOUBLE) { /* for floating point expressions, set the default output image to bitpix = -32 (float) unless the default is already a double */ if (bitpix != DOUBLE_IMG) bitpix = FLOAT_IMG; } /* override output image bitpix if specified by caller */ if (filter->bitpix) bitpix = filter->bitpix; if (DEBUG_PIXFILTER) printf("output bitpix %d\n", bitpix); if (fits_create_img(outfptr, bitpix, naxis, naxes, status)) { ffpmsg("pixel_filter: unable to create output image"); goto CLEANUP; } /* transfer keycards */ { int i, ncards, more; if (fits_get_hdrspace(infptr, &ncards, &more, status)) { ffpmsg("pixel_filter: unable to determine number of keycards"); goto CLEANUP; } for (i = 1; i <= ncards; ++i) { int keyclass; char card[FLEN_CARD]; if (fits_read_record(infptr, i, card, status)) { sprintf(msg, "pixel_filter: unable to read keycard %d", i); ffpmsg(msg); goto CLEANUP; } keyclass = fits_get_keyclass(card); if (keyclass == TYP_STRUC_KEY) { /* output structure defined by fits_create_img */ } else if (keyclass == TYP_COMM_KEY && i < 12) { /* assume this is one of the FITS standard comments */ } else if (keyclass == TYP_NULL_KEY && bitpix < 0) { /* do not transfer BLANK to real output image */ } else if (keyclass == TYP_SCAL_KEY && bitpix < 0) { /* do not transfer BZERO, BSCALE to real output image */ } else if (fits_write_record(outfptr, card, status)) { sprintf(msg, "pixel_filter: unable to write keycard '%s' [%d]\n", card, *status); ffpmsg(msg); goto CLEANUP; } } } switch (bitpix) { case BYTE_IMG: datatype = TLONG; Info.datatype = TBYTE; break; case SHORT_IMG: datatype = TLONG; Info.datatype = TSHORT; break; case LONG_IMG: datatype = TLONG; Info.datatype = TLONG; break; case FLOAT_IMG: datatype = TDOUBLE; Info.datatype = TFLOAT; break; case DOUBLE_IMG: datatype = TDOUBLE; Info.datatype = TDOUBLE; break; default: sprintf(msg, "pixel_filter: unexpected output bitpix %d\n", bitpix); ffpmsg(msg); *status = pERROR; goto CLEANUP; } if (bitpix > 0) { /* arrange for NULLs in output */ long nullVal = filter->blank; if (!filter->blank) { int tstatus = 0; if (fits_read_key_lng(infptr, "BLANK", &nullVal, 0, &tstatus)) { writeBlankKwd = 1; if (bitpix == BYTE_IMG) nullVal = UCHAR_MAX; else if (bitpix == SHORT_IMG) nullVal = SHRT_MIN; else if (bitpix == LONG_IMG) nullVal = LONG_MIN; else printf("unhandled positive output BITPIX %d\n", bitpix); } filter->blank = nullVal; } fits_set_imgnull(outfptr, filter->blank, status); if (DEBUG_PIXFILTER) printf("using blank %ld\n", nullVal); } if (!filter->keyword[0]) { iteratorCol * colIter; DataInfo * varInfo; /*************************************/ /* Create new iterator Output Column */ /*************************************/ col_cnt = gParse.nCols; if (allocateCol(col_cnt, status)) goto CLEANUP; gParse.nCols++; colIter = &gParse.colData[col_cnt]; colIter->fptr = filter->ofptr; colIter->iotype = OutputCol; varInfo = &gParse.varData[col_cnt]; set_image_col_types(colIter->fptr, "CREATED", bitpix, varInfo, colIter); Info.maxRows = -1; if (ffiter(gParse.nCols, gParse.colData, 0, 0, parse_data, &Info, status) == -1) *status = 0; else if (*status) goto CLEANUP; if (Info.anyNull) { if (writeBlankKwd) { fits_update_key_lng(outfptr, "BLANK", filter->blank, "NULL pixel value", status); if (*status) ffpmsg("pixel_filter: unable to write BLANK keyword"); if (DEBUG_PIXFILTER) { printf("output has NULLs\n"); printf("wrote blank [%d]\n", *status); } } } else if (bitpix > 0) /* never used a null */ if (fits_set_imgnull(outfptr, -1234554321, status)) ffpmsg("pixel_filter: unable to reset imgnull"); } else { /* Put constant result into keyword */ char * parName = filter->keyword; char * parInfo = filter->comment; result = gParse.Nodes + gParse.resultNode; switch (Info.datatype) { case TDOUBLE: ffukyd(outfptr, parName, result->value.data.dbl, 15, parInfo, status); break; case TLONG: ffukyj(outfptr, parName, result->value.data.lng, parInfo, status); break; case TLOGICAL: ffukyl(outfptr, parName, result->value.data.log, parInfo, status); break; case TBIT: case TSTRING: ffukys(outfptr, parName, result->value.data.str, parInfo, status); break; default: sprintf(msg, "pixel_filter: unexpected constant result type [%d]\n", Info.datatype); ffpmsg(msg); } } CLEANUP: ffcprs(); FFUNLOCK; return (*status); } healpy-1.8.1/cfitsio/funpack.c0000654000175000017530000001056012272000775016652 0ustar zoncaplanck00000000000000/* FUNPACK * R. Seaman, NOAO * uses fits_img_compress by W. Pence, HEASARC */ #include "fitsio.h" #include "fpack.h" int main (int argc, char *argv[]) { fpstate fpvar; if (argc <= 1) { fu_usage (); fu_hint (); exit (-1); } fp_init (&fpvar); fu_get_param (argc, argv, &fpvar); if (fpvar.listonly) { fp_list (argc, argv, fpvar); } else { fp_preflight (argc, argv, FUNPACK, &fpvar); fp_loop (argc, argv, FUNPACK, fpvar); } exit (0); } int fu_get_param (int argc, char *argv[], fpstate *fpptr) { int gottype=0, gottile=0, wholetile=0, iarg; char tile[SZ_STR]; if (fpptr->initialized != FP_INIT_MAGIC) { fp_msg ("Error: internal initialization error\n"); exit (-1); } tile[0] = 0; /* by default, .fz suffix characters to be deleted from compressed file */ fpptr->delete_suffix = 1; /* flags must come first and be separately specified */ for (iarg = 1; iarg < argc; iarg++) { if (argv[iarg][0] == '-' && strlen (argv[iarg]) == 2) { if (argv[iarg][1] == 'F') { fpptr->clobber++; fpptr->delete_suffix = 0; /* no suffix in this case */ } else if (argv[iarg][1] == 'D') { fpptr->delete_input++; } else if (argv[iarg][1] == 'P') { if (++iarg >= argc) { fu_usage (); fu_hint (); exit (-1); } else strncpy (fpptr->prefix, argv[iarg], SZ_STR); } else if (argv[iarg][1] == 'E') { if (++iarg >= argc) { fu_usage (); fu_hint (); exit (-1); } else strncpy (fpptr->extname, argv[iarg], SZ_STR); } else if (argv[iarg][1] == 'S') { fpptr->to_stdout++; } else if (argv[iarg][1] == 'L') { fpptr->listonly++; } else if (argv[iarg][1] == 'C') { fpptr->do_checksums = 0; } else if (argv[iarg][1] == 'H') { fu_help (); exit (0); } else if (argv[iarg][1] == 'V') { fp_version (); exit (0); } else if (argv[iarg][1] == 'Z') { fpptr->do_gzip_file++; } else if (argv[iarg][1] == 'v') { fpptr->verbose = 1; } else if (argv[iarg][1] == 'O') { if (++iarg >= argc) { fu_usage (); fu_hint (); exit (-1); } else strncpy (fpptr->outfile, argv[iarg], SZ_STR); } else { fp_msg ("Error: unknown command line flag `"); fp_msg (argv[iarg]); fp_msg ("'\n"); fu_usage (); fu_hint (); exit (-1); } } else break; } if (fpptr->extname[0] && (fpptr->clobber || fpptr->delete_input)) { fp_msg ("Error: -E option may not be used with -F or -D\n"); fu_usage (); exit (-1); } if (fpptr->to_stdout && (fpptr->outfile[0] || fpptr->prefix[0]) ) { fp_msg ("Error: -S option may not be used with -P or -O\n"); fu_usage (); exit (-1); } if (fpptr->outfile[0] && fpptr->prefix[0] ) { fp_msg ("Error: -P and -O options may not be used together\n"); fu_usage (); exit (-1); } if (iarg >= argc) { fp_msg ("Error: no FITS files to uncompress\n"); fu_usage (); exit (-1); } else fpptr->firstfile = iarg; return(0); } int fu_usage (void) { fp_msg ("usage: funpack [-E ] [-P
    ] [-O ] [-Z] -v \n");
            fp_msg ("more:   [-F] [-D] [-S] [-L] [-C] [-H] [-V] \n");
    	return(0);
    }
    
    int fu_hint (void)
    {
    	fp_msg ("      `funpack -H' for help\n");
    	return(0);
    }
    
    int fu_help (void)
    {
    fp_msg ("funpack, decompress fpacked files.  Version ");
    fp_version ();
    fu_usage ();
    fp_msg ("\n");
    
    fp_msg ("Flags must be separate and appear before filenames:\n");
    fp_msg (" -E  Unpack only the list of HDU names or numbers in the file.\n");
    fp_msg (" -P 
        Prepend 
     to create new output filenames.\n");
    fp_msg (" -O    Specify full output file name.\n");
    fp_msg (" -Z          Recompress the output file with host GZIP program.\n");
    fp_msg (" -F          Overwrite input file by output file with same name.\n");
    fp_msg (" -D          Delete input file after writing output.\n");
    fp_msg (" -S          Output uncompressed file to STDOUT file stream.\n");
    fp_msg (" -L          List contents, files unchanged.\n");
    
    fp_msg (" -C          Don't update FITS checksum keywords.\n");
    
    fp_msg (" -v          Verbose mode; list each file as it is processed.\n");
    fp_msg (" -H          Show this message.\n");
    fp_msg (" -V          Show version number.\n");
    
    fp_msg (" \n       FITS files to unpack; enter '-' (a hyphen) to read from stdin.\n");
    fp_msg (" Refer to the fpack User's Guide for more extensive help.\n");
    	return(0);
    }
    healpy-1.8.1/cfitsio/iter_a.f0000654000175000017530000001533212272000775016473 0ustar  zoncaplanck00000000000000      program f77iterate_a
    
          external flux_rate
          integer ncols
          parameter (ncols=3)
          integer units(ncols), colnum(ncols), datatype(ncols)
          integer iotype(ncols), offset, rows_per_loop, status
          character*70 colname(ncols)
          integer iunit, blocksize
          character*80 fname
    
    C     include f77.inc -------------------------------------
    C     Codes for FITS extension types
          integer IMAGE_HDU, ASCII_TBL, BINARY_TBL
          parameter (
         &     IMAGE_HDU  = 0,
         &     ASCII_TBL  = 1,
         &     BINARY_TBL = 2  )
    
    C     Codes for FITS table data types
    
          integer TBIT,TBYTE,TLOGICAL,TSTRING,TSHORT,TINT
          integer TFLOAT,TDOUBLE,TCOMPLEX,TDBLCOMPLEX
          parameter (
         &     TBIT        =   1,
         &     TBYTE       =  11,
         &     TLOGICAL    =  14,
         &     TSTRING     =  16,
         &     TSHORT      =  21,
         &     TINT        =  31,
         &     TFLOAT      =  42,
         &     TDOUBLE     =  82,
         &     TCOMPLEX    =  83,
         &     TDBLCOMPLEX = 163  )
    
    C     Codes for iterator column types
    
          integer InputCol, InputOutputCol, OutputCol
          parameter (
         &     InputCol       = 0,
         &     InputOutputCol = 1,
         &     OutputCol      = 2  )
    C     End of f77.inc -------------------------------------
    
    
          iunit = 15
    
          units(1) = iunit
          units(2) = iunit
          units(3) = iunit
    
    C open the file
          fname = 'iter_a.fit'
          call ftopen(iunit,fname,1,blocksize,status)
    
    C move to the HDU containing the rate table
          call ftmnhd(iunit, BINARY_TBL, 'RATE', 0, status)
    
    C Select iotypes for column data
          iotype(1) = InputCol
          iotype(2) = InputCol
          iotype(3) = OutputCol
    
    C Select desired datatypes for column data
          datatype(1) = TINT
          datatype(2) = TFLOAT
          datatype(3) = TFLOAT
    
    C find the column number corresponding to each column
          call ftgcno( iunit, 0, 'counts', colnum(1), status )
          call ftgcno( iunit, 0, 'time', colnum(2), status )
          call ftgcno( iunit, 0, 'rate', colnum(3), status )
    
    C use default optimum number of rows
          rows_per_loop = 0
          offset = 0
    
    C apply the rate function to each row of the table
          print *, 'Calling iterator function...', status
    
    C although colname is not being used, still need to send a string
    C array in the function
          call ftiter( ncols, units, colnum, colname, datatype, iotype,
         &      offset, rows_per_loop, flux_rate, 3, status )
    
          call ftclos(iunit, status)
          stop
          end
    
    C***************************************************************************
    C   Sample iterator function that calculates the output flux 'rate' column
    C   by dividing the input 'counts' by the 'time' column.
    C   It also applies a constant deadtime correction factor if the 'deadtime'
    C   keyword exists.  Finally, this creates or updates the 'LIVETIME'
    C   keyword with the sum of all the individual integration times.
    C***************************************************************************
          subroutine flux_rate(totalrows, offset, firstrow, nrows, ncols,
         &     units, colnum, datatype, iotype, repeat, status, userData,
         &     counts, interval, rate )
    
          integer totalrows, offset, firstrow, nrows, ncols
          integer units(ncols), colnum(ncols), datatype(ncols)
          integer iotype(ncols), repeat(ncols)
          integer userData
    
    C     include f77.inc -------------------------------------
    C     Codes for FITS extension types
          integer IMAGE_HDU, ASCII_TBL, BINARY_TBL
          parameter (
         &     IMAGE_HDU  = 0,
         &     ASCII_TBL  = 1,
         &     BINARY_TBL = 2  )
    
    C     Codes for FITS table data types
    
          integer TBIT,TBYTE,TLOGICAL,TSTRING,TSHORT,TINT
          integer TFLOAT,TDOUBLE,TCOMPLEX,TDBLCOMPLEX
          parameter (
         &     TBIT        =   1,
         &     TBYTE       =  11,
         &     TLOGICAL    =  14,
         &     TSTRING     =  16,
         &     TSHORT      =  21,
         &     TINT        =  31,
         &     TFLOAT      =  42,
         &     TDOUBLE     =  82,
         &     TCOMPLEX    =  83,
         &     TDBLCOMPLEX = 163  )
    
    C     Codes for iterator column types
    
          integer InputCol, InputOutputCol, OutputCol
          parameter (
         &     InputCol       = 0,
         &     InputOutputCol = 1,
         &     OutputCol      = 2  )
    C     End of f77.inc -------------------------------------
    
          integer counts(*)
          real interval(*),rate(*)
    
          integer ii, status
          character*80 comment
    
    C**********************************************************************
    C  must preserve these values between calls
          real deadtime, livetime
          common /fluxblock/ deadtime, livetime
    C**********************************************************************
    
          if (status .ne. 0) return
    
    C    --------------------------------------------------------
    C      Initialization procedures: execute on the first call  
    C    --------------------------------------------------------
          if (firstrow .eq. 1) then
             if (ncols .ne. 3) then
    C     wrong number of columns
                status = -1
                return
             endif
    
             if (datatype(1).ne.TINT .or. datatype(2).ne.TFLOAT .or.
         &        datatype(3).ne.TFLOAT ) then
    C     bad data type
                status = -2
                return
             endif
    
    C     try to get the deadtime keyword value
             call ftgkye( units(1), 'DEADTIME', deadtime, comment, status )
    
             if (status.ne.0) then
    C     default deadtime if keyword doesn't exist
                deadtime = 1.0
                status = 0
             elseif (deadtime .lt. 0.0 .or. deadtime .gt. 1.0) then
    C     bad deadtime value
                status = -3
                return
             endif
    
             print *, 'deadtime = ', deadtime
    
             livetime = 0.0
          endif
    
    C    --------------------------------------------
    C      Main loop: process all the rows of data
    C    --------------------------------------------
          
    C     NOTE: 1st element of array is the null pixel value!
    C     Loop over elements 2 to nrows+1, not 1 to nrows.
          
    C     this version ignores null values
    
    C     set the output null value to zero to ignore nulls */
          rate(1) = 0.0
          do 10 ii = 2,nrows+1
             if ( interval(ii) .gt. 0.0) then
               rate(ii) = counts(ii) / interval(ii) / deadtime
               livetime = livetime + interval(ii)
            else
    C     Nonsensical negative time interval
               status = -3
               return
            endif
     10   continue
    
    C    -------------------------------------------------------
    C      Clean up procedures:  after processing all the rows  
    C    -------------------------------------------------------
    
          if (firstrow + nrows - 1 .eq. totalrows) then
    C     update the LIVETIME keyword value
    
             call ftukye( units(1),'LIVETIME', livetime, 3,
         &        'total integration time', status )
             print *,'livetime = ', livetime
    
          endif
     
          return
          end
    healpy-1.8.1/cfitsio/fits_hcompress.c0000654000175000017530000013365012272000775020261 0ustar  zoncaplanck00000000000000/*  #########################################################################
    These routines to apply the H-compress compression algorithm to a 2-D Fits
    image were written by R. White at the STScI and were obtained from the STScI at
    http://www.stsci.edu/software/hcompress.html
    
    This source file is a concatination of the following sources files in the
    original distribution 
     htrans.c 
     digitize.c 
     encode.c 
     qwrite.c 
     doencode.c 
     bit_output.c 
     qtree_encode.c
    
    The following modifications have been made to the original code:
    
      - commented out redundant "include" statements
      - added the noutchar global variable 
      - changed all the 'extern' declarations to 'static', since all the routines are in
        the same source file
      - changed the first parameter in encode (and in lower level routines from a file stream
        to a char array
      - modifid the encode routine to return the size of the compressed array of bytes
      - changed calls to printf and perror to call the CFITSIO ffpmsg routine
      - modified the mywrite routine, and lower level byte writing routines,  to copy 
        the output bytes to a char array, instead of writing them to a file stream
      - replace "exit" statements with "return" statements
      - changed the function declarations to the more modern ANSI C style
    
     ############################################################################  */
     
    #include 
    #include 
    #include 
    #include 
    #include "fitsio2.h"
    
    static long noutchar;
    static long noutmax;
    
    static int htrans(int a[],int nx,int ny);
    static void digitize(int a[], int nx, int ny, int scale);
    static int encode(char *outfile, long *nlen, int a[], int nx, int ny, int scale);
    static void shuffle(int a[], int n, int n2, int tmp[]);
    
    static int htrans64(LONGLONG a[],int nx,int ny);
    static void digitize64(LONGLONG a[], int nx, int ny, int scale);
    static int encode64(char *outfile, long *nlen, LONGLONG a[], int nx, int ny, int scale);
    static void shuffle64(LONGLONG a[], int n, int n2, LONGLONG tmp[]);
    
    static  void writeint(char *outfile, int a);
    static  void writelonglong(char *outfile, LONGLONG a);
    static  int doencode(char *outfile, int a[], int nx, int ny, unsigned char nbitplanes[3]);
    static  int doencode64(char *outfile, LONGLONG a[], int nx, int ny, unsigned char nbitplanes[3]);
    static int  qwrite(char *file, char buffer[], int n);
    
    static int qtree_encode(char *outfile, int a[], int n, int nqx, int nqy, int nbitplanes);
    static int qtree_encode64(char *outfile, LONGLONG a[], int n, int nqx, int nqy, int nbitplanes);
    static void start_outputing_bits(void);
    static void done_outputing_bits(char *outfile);
    static void output_nbits(char *outfile, int bits, int n);
    
    static void qtree_onebit(int a[], int n, int nx, int ny, unsigned char b[], int bit);
    static void qtree_onebit64(LONGLONG a[], int n, int nx, int ny, unsigned char b[], int bit);
    static void qtree_reduce(unsigned char a[], int n, int nx, int ny, unsigned char b[]);
    static int  bufcopy(unsigned char a[], int n, unsigned char buffer[], int *b, int bmax);
    static void write_bdirect(char *outfile, int a[], int n,int nqx, int nqy, unsigned char scratch[], int bit);
    static void write_bdirect64(char *outfile, LONGLONG a[], int n,int nqx, int nqy, unsigned char scratch[], int bit);
    
    /* #define output_nybble(outfile,c)	output_nbits(outfile,c,4) */
    static void output_nybble(char *outfile, int bits);
    static void output_nnybble(char *outfile, int n, unsigned char array[]);
    
    #define output_huffman(outfile,c)	output_nbits(outfile,code[c],ncode[c])
    
    /* ---------------------------------------------------------------------- */
    int fits_hcompress(int *a, int ny, int nx, int scale, char *output, 
                      long *nbytes, int *status)
    {
      /* 
         compress the input image using the H-compress algorithm
      
       a  - input image array
       nx - size of X axis of image
       ny - size of Y axis of image
       scale - quantization scale factor. Larger values results in more (lossy) compression
               scale = 0 does lossless compression
       output - pre-allocated array to hold the output compressed stream of bytes
       nbyts  - input value = size of the output buffer;
                returned value = size of the compressed byte stream, in bytes
    
     NOTE: the nx and ny dimensions as defined within this code are reversed from
     the usual FITS notation.  ny is the fastest varying dimension, which is
     usually considered the X axis in the FITS image display
    
      */
    
      int stat;
      
      if (*status > 0) return(*status);
    
      /* H-transform */
      stat = htrans(a, nx, ny);
      if (stat) {
         *status = stat;
         return(*status);
      }
    
      /* digitize */
      digitize(a, nx, ny, scale);
    
      /* encode and write to output array */
    
      FFLOCK;
      noutmax = *nbytes;  /* input value is the allocated size of the array */
      *nbytes = 0;  /* reset */
    
      stat = encode(output, nbytes, a, nx, ny, scale);
      FFUNLOCK;
      
      *status = stat;
      return(*status);
    }
    /* ---------------------------------------------------------------------- */
    int fits_hcompress64(LONGLONG *a, int ny, int nx, int scale, char *output, 
                      long *nbytes, int *status)
    {
      /* 
         compress the input image using the H-compress algorithm
      
       a  - input image array
       nx - size of X axis of image
       ny - size of Y axis of image
       scale - quantization scale factor. Larger values results in more (lossy) compression
               scale = 0 does lossless compression
       output - pre-allocated array to hold the output compressed stream of bytes
       nbyts  - size of the compressed byte stream, in bytes
    
     NOTE: the nx and ny dimensions as defined within this code are reversed from
     the usual FITS notation.  ny is the fastest varying dimension, which is
     usually considered the X axis in the FITS image display
    
      */
    
      int stat;
      
      if (*status > 0) return(*status);
    
      /* H-transform */
      stat = htrans64(a, nx, ny);
      if (stat) {
         *status = stat;
         return(*status);
      }
    
      /* digitize */
      digitize64(a, nx, ny, scale);
    
      /* encode and write to output array */
    
      FFLOCK;
      noutmax = *nbytes;  /* input value is the allocated size of the array */
      *nbytes = 0;  /* reset */
    
      stat = encode64(output, nbytes, a, nx, ny, scale);
      FFUNLOCK;
    
      *status = stat;
      return(*status);
    }
    
     
    /* Copyright (c) 1993 Association of Universities for Research 
     * in Astronomy. All rights reserved. Produced under National   
     * Aeronautics and Space Administration Contract No. NAS5-26555.
     */
    /* htrans.c   H-transform of NX x NY integer image
     *
     * Programmer: R. White		Date: 11 May 1992
     */
    
    /* ######################################################################### */
    static int htrans(int a[],int nx,int ny)
    {
    int nmax, log2n, h0, hx, hy, hc, nxtop, nytop, i, j, k;
    int oddx, oddy;
    int shift, mask, mask2, prnd, prnd2, nrnd2;
    int s10, s00;
    int *tmp;
    
    	/*
    	 * log2n is log2 of max(nx,ny) rounded up to next power of 2
    	 */
    	nmax = (nx>ny) ? nx : ny;
    	log2n = (int) (log((float) nmax)/log(2.0)+0.5);
    	if ( nmax > (1<> shift;
    				hx = (a[s10+1] + a[s10] - a[s00+1] - a[s00]) >> shift;
    				hy = (a[s10+1] - a[s10] + a[s00+1] - a[s00]) >> shift;
    				hc = (a[s10+1] - a[s10] - a[s00+1] + a[s00]) >> shift;
    
    				/*
    				 * Throw away the 2 bottom bits of h0, bottom bit of hx,hy.
    				 * To get rounding to be same for positive and negative
    				 * numbers, nrnd2 = prnd2 - 1.
    				 */
    				a[s10+1] = hc;
    				a[s10  ] = ( (hx>=0) ? (hx+prnd)  :  hx        ) & mask ;
    				a[s00+1] = ( (hy>=0) ? (hy+prnd)  :  hy        ) & mask ;
    				a[s00  ] = ( (h0>=0) ? (h0+prnd2) : (h0+nrnd2) ) & mask2;
    				s00 += 2;
    				s10 += 2;
    			}
    			if (oddy) {
    				/*
    				 * do last element in row if row length is odd
    				 * s00+1, s10+1 are off edge
    				 */
    				h0 = (a[s10] + a[s00]) << (1-shift);
    				hx = (a[s10] - a[s00]) << (1-shift);
    				a[s10  ] = ( (hx>=0) ? (hx+prnd)  :  hx        ) & mask ;
    				a[s00  ] = ( (h0>=0) ? (h0+prnd2) : (h0+nrnd2) ) & mask2;
    				s00 += 1;
    				s10 += 1;
    			}
    		}
    		if (oddx) {
    			/*
    			 * do last row if column length is odd
    			 * s10, s10+1 are off edge
    			 */
    			s00 = i*ny;
    			for (j = 0; j=0) ? (hy+prnd)  :  hy        ) & mask ;
    				a[s00  ] = ( (h0>=0) ? (h0+prnd2) : (h0+nrnd2) ) & mask2;
    				s00 += 2;
    			}
    			if (oddy) {
    				/*
    				 * do corner element if both row and column lengths are odd
    				 * s00+1, s10, s10+1 are off edge
    				 */
    				h0 = a[s00] << (2-shift);
    				a[s00  ] = ( (h0>=0) ? (h0+prnd2) : (h0+nrnd2) ) & mask2;
    			}
    		}
    		/*
    		 * now shuffle in each dimension to group coefficients by order
    		 */
    		for (i = 0; i>1;
    		nytop = (nytop+1)>>1;
    		/*
    		 * divisor doubles after first reduction
    		 */
    		shift = 1;
    		/*
    		 * masks, rounding values double after each iteration
    		 */
    		mask  = mask2;
    		prnd  = prnd2;
    		mask2 = mask2 << 1;
    		prnd2 = prnd2 << 1;
    		nrnd2 = prnd2 - 1;
    	}
    	free(tmp);
    	return(0);
    }
    /* ######################################################################### */
    
    static int htrans64(LONGLONG a[],int nx,int ny)
    {
    int nmax, log2n, nxtop, nytop, i, j, k;
    int oddx, oddy;
    int shift;
    int s10, s00;
    LONGLONG h0, hx, hy, hc, prnd, prnd2, nrnd2, mask, mask2;
    LONGLONG *tmp;
    
    	/*
    	 * log2n is log2 of max(nx,ny) rounded up to next power of 2
    	 */
    	nmax = (nx>ny) ? nx : ny;
    	log2n = (int) (log((float) nmax)/log(2.0)+0.5);
    	if ( nmax > (1<> shift;
    				hx = (a[s10+1] + a[s10] - a[s00+1] - a[s00]) >> shift;
    				hy = (a[s10+1] - a[s10] + a[s00+1] - a[s00]) >> shift;
    				hc = (a[s10+1] - a[s10] - a[s00+1] + a[s00]) >> shift;
    
    				/*
    				 * Throw away the 2 bottom bits of h0, bottom bit of hx,hy.
    				 * To get rounding to be same for positive and negative
    				 * numbers, nrnd2 = prnd2 - 1.
    				 */
    				a[s10+1] = hc;
    				a[s10  ] = ( (hx>=0) ? (hx+prnd)  :  hx        ) & mask ;
    				a[s00+1] = ( (hy>=0) ? (hy+prnd)  :  hy        ) & mask ;
    				a[s00  ] = ( (h0>=0) ? (h0+prnd2) : (h0+nrnd2) ) & mask2;
    				s00 += 2;
    				s10 += 2;
    			}
    			if (oddy) {
    				/*
    				 * do last element in row if row length is odd
    				 * s00+1, s10+1 are off edge
    				 */
    				h0 = (a[s10] + a[s00]) << (1-shift);
    				hx = (a[s10] - a[s00]) << (1-shift);
    				a[s10  ] = ( (hx>=0) ? (hx+prnd)  :  hx        ) & mask ;
    				a[s00  ] = ( (h0>=0) ? (h0+prnd2) : (h0+nrnd2) ) & mask2;
    				s00 += 1;
    				s10 += 1;
    			}
    		}
    		if (oddx) {
    			/*
    			 * do last row if column length is odd
    			 * s10, s10+1 are off edge
    			 */
    			s00 = i*ny;
    			for (j = 0; j=0) ? (hy+prnd)  :  hy        ) & mask ;
    				a[s00  ] = ( (h0>=0) ? (h0+prnd2) : (h0+nrnd2) ) & mask2;
    				s00 += 2;
    			}
    			if (oddy) {
    				/*
    				 * do corner element if both row and column lengths are odd
    				 * s00+1, s10, s10+1 are off edge
    				 */
    				h0 = a[s00] << (2-shift);
    				a[s00  ] = ( (h0>=0) ? (h0+prnd2) : (h0+nrnd2) ) & mask2;
    			}
    		}
    		/*
    		 * now shuffle in each dimension to group coefficients by order
    		 */
    		for (i = 0; i>1;
    		nytop = (nytop+1)>>1;
    		/*
    		 * divisor doubles after first reduction
    		 */
    		shift = 1;
    		/*
    		 * masks, rounding values double after each iteration
    		 */
    		mask  = mask2;
    		prnd  = prnd2;
    		mask2 = mask2 << 1;
    		prnd2 = prnd2 << 1;
    		nrnd2 = prnd2 - 1;
    	}
    	free(tmp);
    	return(0);
    }
    
    /* ######################################################################### */
    static void
    shuffle(int a[], int n, int n2, int tmp[])
    {
    
    /* 
    int a[];	 array to shuffle					
    int n;		 number of elements to shuffle	
    int n2;		 second dimension					
    int tmp[];	 scratch storage					
    */
    
    int i;
    int *p1, *p2, *pt;
    
    	/*
    	 * copy odd elements to tmp
    	 */
    	pt = tmp;
    	p1 = &a[n2];
    	for (i=1; i < n; i += 2) {
    		*pt = *p1;
    		pt += 1;
    		p1 += (n2+n2);
    	}
    	/*
    	 * compress even elements into first half of A
    	 */
    	p1 = &a[n2];
    	p2 = &a[n2+n2];
    	for (i=2; i0) ? (*p+d) : (*p-d))/scale;
    }
    
    /* ######################################################################### */
    static void  
    digitize64(LONGLONG a[], int nx, int ny, int scale)
    {
    LONGLONG d, *p, scale64;
    
    	/*
    	 * round to multiple of scale
    	 */
    	if (scale <= 1) return;
    	d=(scale+1)/2-1;
    	scale64 = scale;  /* use a 64-bit int for efficiency in the big loop */
    
    	for (p=a; p <= &a[nx*ny-1]; p++) *p = ((*p>0) ? (*p+d) : (*p-d))/scale64;
    }
    /* ######################################################################### */
    /* ######################################################################### */
    /* Copyright (c) 1993 Association of Universities for Research 
     * in Astronomy. All rights reserved. Produced under National   
     * Aeronautics and Space Administration Contract No. NAS5-26555.
     */
    /* encode.c		encode H-transform and write to outfile
     *
     * Programmer: R. White		Date: 2 February 1994
     */
    
    static char code_magic[2] = { (char)0xDD, (char)0x99 };
    
    
    /* ######################################################################### */
    static int encode(char *outfile, long *nlength, int a[], int nx, int ny, int scale)
    {
    
    /* FILE *outfile;  - change outfile to a char array */  
    /*
      long * nlength    returned length (in bytes) of the encoded array)
      int a[];								 input H-transform array (nx,ny)
      int nx,ny;								 size of H-transform array	
      int scale;								 scale factor for digitization
    */
    int nel, nx2, ny2, i, j, k, q, vmax[3], nsign, bits_to_go;
    unsigned char nbitplanes[3];
    unsigned char *signbits;
    int stat;
    
            noutchar = 0;  /* initialize the number of compressed bytes that have been written */
    	nel = nx*ny;
    	/*
    	 * write magic value
    	 */
    	qwrite(outfile, code_magic, sizeof(code_magic));
    	writeint(outfile, nx);			/* size of image */
    	writeint(outfile, ny);
    	writeint(outfile, scale);		/* scale factor for digitization */
    	/*
    	 * write first value of A (sum of all pixels -- the only value
    	 * which does not compress well)
    	 */
    	writelonglong(outfile, (LONGLONG) a[0]);
    
    	a[0] = 0;
    	/*
    	 * allocate array for sign bits and save values, 8 per byte
    	 */
    	signbits = (unsigned char *) malloc((nel+7)/8);
    	if (signbits == (unsigned char *) NULL) {
    		ffpmsg("encode: insufficient memory");
    		return(DATA_COMPRESSION_ERR);
    	}
    	nsign = 0;
    	bits_to_go = 8;
    	signbits[0] = 0;
    	for (i=0; i 0) {
    			/*
    			 * positive element, put zero at end of buffer
    			 */
    			signbits[nsign] <<= 1;
    			bits_to_go -= 1;
    		} else if (a[i] < 0) {
    			/*
    			 * negative element, shift in a one
    			 */
    			signbits[nsign] <<= 1;
    			signbits[nsign] |= 1;
    			bits_to_go -= 1;
    			/*
    			 * replace a by absolute value
    			 */
    			a[i] = -a[i];
    		}
    		if (bits_to_go == 0) {
    			/*
    			 * filled up this byte, go to the next one
    			 */
    			bits_to_go = 8;
    			nsign += 1;
    			signbits[nsign] = 0;
    		}
    	}
    	if (bits_to_go != 8) {
    		/*
    		 * some bits in last element
    		 * move bits in last byte to bottom and increment nsign
    		 */
    		signbits[nsign] <<= bits_to_go;
    		nsign += 1;
    	}
    	/*
    	 * calculate number of bit planes for 3 quadrants
    	 *
    	 * quadrant 0=bottom left, 1=bottom right or top left, 2=top right, 
    	 */
    	for (q=0; q<3; q++) {
    		vmax[q] = 0;
    	}
    	/*
    	 * get maximum absolute value in each quadrant
    	 */
    	nx2 = (nx+1)/2;
    	ny2 = (ny+1)/2;
    	j=0;	/* column counter	*/
    	k=0;	/* row counter		*/
    	for (i=0; i=ny2) + (k>=nx2);
    		if (vmax[q] < a[i]) vmax[q] = a[i];
    		if (++j >= ny) {
    			j = 0;
    			k += 1;
    		}
    	}
    	/*
    	 * now calculate number of bits for each quadrant
    	 */
    
            /* this is a more efficient way to do this, */
     
     
            for (q = 0; q < 3; q++) {
                for (nbitplanes[q] = 0; vmax[q]>0; vmax[q] = vmax[q]>>1, nbitplanes[q]++) ; 
            }
    
    
    /*
    	for (q = 0; q < 3; q++) {
    		nbitplanes[q] = (int) (log((float) (vmax[q]+1))/log(2.0)+0.5);
    		if ( (vmax[q]+1) > (1< 0) {
    
    	   if ( 0 == qwrite(outfile, (char *) signbits, nsign)) {
    	        free(signbits);
    	        *nlength = noutchar;
    		ffpmsg("encode: output buffer too small");
    		return(DATA_COMPRESSION_ERR);
              }
    	} 
    	
    	free(signbits);
    	*nlength = noutchar;
    
            if (noutchar >= noutmax) {
    		ffpmsg("encode: output buffer too small");
    		return(DATA_COMPRESSION_ERR);
            }  
    	
    	return(stat); 
    }
    /* ######################################################################### */
    static int encode64(char *outfile, long *nlength, LONGLONG a[], int nx, int ny, int scale)
    {
    
    /* FILE *outfile;  - change outfile to a char array */  
    /*
      long * nlength    returned length (in bytes) of the encoded array)
      LONGLONG a[];								 input H-transform array (nx,ny)
      int nx,ny;								 size of H-transform array	
      int scale;								 scale factor for digitization
    */
    int nel, nx2, ny2, i, j, k, q, nsign, bits_to_go;
    LONGLONG vmax[3];
    unsigned char nbitplanes[3];
    unsigned char *signbits;
    int stat;
    
            noutchar = 0;  /* initialize the number of compressed bytes that have been written */
    	nel = nx*ny;
    	/*
    	 * write magic value
    	 */
    	qwrite(outfile, code_magic, sizeof(code_magic));
    	writeint(outfile, nx);				/* size of image	*/
    	writeint(outfile, ny);
    	writeint(outfile, scale);			/* scale factor for digitization */
    	/*
    	 * write first value of A (sum of all pixels -- the only value
    	 * which does not compress well)
    	 */
    	writelonglong(outfile, a[0]);
    
    	a[0] = 0;
    	/*
    	 * allocate array for sign bits and save values, 8 per byte
    	 */
    	signbits = (unsigned char *) malloc((nel+7)/8);
    	if (signbits == (unsigned char *) NULL) {
    		ffpmsg("encode64: insufficient memory");
    		return(DATA_COMPRESSION_ERR);
    	}
    	nsign = 0;
    	bits_to_go = 8;
    	signbits[0] = 0;
    	for (i=0; i 0) {
    			/*
    			 * positive element, put zero at end of buffer
    			 */
    			signbits[nsign] <<= 1;
    			bits_to_go -= 1;
    		} else if (a[i] < 0) {
    			/*
    			 * negative element, shift in a one
    			 */
    			signbits[nsign] <<= 1;
    			signbits[nsign] |= 1;
    			bits_to_go -= 1;
    			/*
    			 * replace a by absolute value
    			 */
    			a[i] = -a[i];
    		}
    		if (bits_to_go == 0) {
    			/*
    			 * filled up this byte, go to the next one
    			 */
    			bits_to_go = 8;
    			nsign += 1;
    			signbits[nsign] = 0;
    		}
    	}
    	if (bits_to_go != 8) {
    		/*
    		 * some bits in last element
    		 * move bits in last byte to bottom and increment nsign
    		 */
    		signbits[nsign] <<= bits_to_go;
    		nsign += 1;
    	}
    	/*
    	 * calculate number of bit planes for 3 quadrants
    	 *
    	 * quadrant 0=bottom left, 1=bottom right or top left, 2=top right, 
    	 */
    	for (q=0; q<3; q++) {
    		vmax[q] = 0;
    	}
    	/*
    	 * get maximum absolute value in each quadrant
    	 */
    	nx2 = (nx+1)/2;
    	ny2 = (ny+1)/2;
    	j=0;	/* column counter	*/
    	k=0;	/* row counter		*/
    	for (i=0; i=ny2) + (k>=nx2);
    		if (vmax[q] < a[i]) vmax[q] = a[i];
    		if (++j >= ny) {
    			j = 0;
    			k += 1;
    		}
    	}
    	/*
    	 * now calculate number of bits for each quadrant
    	 */
    	 
            /* this is a more efficient way to do this, */
     
     
            for (q = 0; q < 3; q++) {
                for (nbitplanes[q] = 0; vmax[q]>0; vmax[q] = vmax[q]>>1, nbitplanes[q]++) ; 
            }
    
    
    /*
    	for (q = 0; q < 3; q++) {
    		nbitplanes[q] = log((float) (vmax[q]+1))/log(2.0)+0.5;
    		if ( (vmax[q]+1) > (((LONGLONG) 1)< 0) {
    
    	   if ( 0 == qwrite(outfile, (char *) signbits, nsign)) {
    	        free(signbits);
    	        *nlength = noutchar;
    		ffpmsg("encode: output buffer too small");
    		return(DATA_COMPRESSION_ERR);
              }
    	} 
    
    	free(signbits);
    	*nlength = noutchar;
    
            if (noutchar >= noutmax) {
    		ffpmsg("encode64: output buffer too small");
    		return(DATA_COMPRESSION_ERR);
            }
    		
    	return(stat); 
    }
    /* ######################################################################### */
    /* ######################################################################### */
    /* Copyright (c) 1993 Association of Universities for Research 
     * in Astronomy. All rights reserved. Produced under National   
     * Aeronautics and Space Administration Contract No. NAS5-26555.
     */
    /* qwrite.c	Write binary data
     *
     * Programmer: R. White		Date: 11 March 1991
     */
    
    /* ######################################################################### */
    static void
    writeint(char *outfile, int a)
    {
    int i;
    unsigned char b[4];
    
    	/* Write integer A one byte at a time to outfile.
    	 *
    	 * This is portable from Vax to Sun since it eliminates the
    	 * need for byte-swapping.
    	 */
    	for (i=3; i>=0; i--) {
    		b[i] = a & 0x000000ff;
    		a >>= 8;
    	}
    	for (i=0; i<4; i++) qwrite(outfile, (char *) &b[i],1);
    }
    
    /* ######################################################################### */
    static void
    writelonglong(char *outfile, LONGLONG a)
    {
    int i;
    unsigned char b[8];
    
    	/* Write integer A one byte at a time to outfile.
    	 *
    	 * This is portable from Vax to Sun since it eliminates the
    	 * need for byte-swapping.
    	 */
    	for (i=7; i>=0; i--) {
    		b[i] = (unsigned char) (a & 0x000000ff);
    		a >>= 8;
    	}
    	for (i=0; i<8; i++) qwrite(outfile, (char *) &b[i],1);
    }
    /* ######################################################################### */
    static int
    qwrite(char *file, char buffer[], int n){
        /*
         * write n bytes from buffer into file
         * returns number of bytes read (=n) if successful, <=0 if not
         */
    
         if (noutchar + n > noutmax) return(0);  /* buffer overflow */
         
         memcpy(&file[noutchar], buffer, n);
         noutchar += n;
    
         return(n);
    }
    /* ######################################################################### */
    /* ######################################################################### */
    /* Copyright (c) 1993 Association of Universities for Research 
     * in Astronomy. All rights reserved. Produced under National   
     * Aeronautics and Space Administration Contract No. NAS5-26555.
     */
    /* doencode.c	Encode 2-D array and write stream of characters on outfile
     *
     * This version assumes that A is positive.
     *
     * Programmer: R. White		Date: 7 May 1991
     */
    
    /* ######################################################################### */
    static int
    doencode(char *outfile, int a[], int nx, int ny, unsigned char nbitplanes[3])
    {
    /* char *outfile;						 output data stream
    int a[];							 Array of values to encode			
    int nx,ny;							 Array dimensions [nx][ny]			
    unsigned char nbitplanes[3];		 Number of bit planes in quadrants	
    */
    
    int nx2, ny2, stat;
    
    	nx2 = (nx+1)/2;
    	ny2 = (ny+1)/2;
    	/*
    	 * Initialize bit output
    	 */
    	start_outputing_bits();
    	/*
    	 * write out the bit planes for each quadrant
    	 */
    	stat = qtree_encode(outfile, &a[0],          ny, nx2,  ny2,  nbitplanes[0]);
    
            if (!stat)
    		stat = qtree_encode(outfile, &a[ny2],        ny, nx2,  ny/2, nbitplanes[1]);
    
            if (!stat)
    		stat = qtree_encode(outfile, &a[ny*nx2],     ny, nx/2, ny2,  nbitplanes[1]);
    
            if (!stat)
    		stat = qtree_encode(outfile, &a[ny*nx2+ny2], ny, nx/2, ny/2, nbitplanes[2]);
    	/*
    	 * Add zero as an EOF symbol
    	 */
    	output_nybble(outfile, 0);
    	done_outputing_bits(outfile);
    	
    	return(stat);
    }
    /* ######################################################################### */
    static int
    doencode64(char *outfile, LONGLONG a[], int nx, int ny, unsigned char nbitplanes[3])
    {
    /* char *outfile;						 output data stream
    LONGLONG a[];							 Array of values to encode			
    int nx,ny;							 Array dimensions [nx][ny]			
    unsigned char nbitplanes[3];		 Number of bit planes in quadrants	
    */
    
    int nx2, ny2, stat;
    
    	nx2 = (nx+1)/2;
    	ny2 = (ny+1)/2;
    	/*
    	 * Initialize bit output
    	 */
    	start_outputing_bits();
    	/*
    	 * write out the bit planes for each quadrant
    	 */
    	stat = qtree_encode64(outfile, &a[0],          ny, nx2,  ny2,  nbitplanes[0]);
    
            if (!stat)
    		stat = qtree_encode64(outfile, &a[ny2],        ny, nx2,  ny/2, nbitplanes[1]);
    
            if (!stat)
    		stat = qtree_encode64(outfile, &a[ny*nx2],     ny, nx/2, ny2,  nbitplanes[1]);
    
            if (!stat)
    		stat = qtree_encode64(outfile, &a[ny*nx2+ny2], ny, nx/2, ny/2, nbitplanes[2]);
    	/*
    	 * Add zero as an EOF symbol
    	 */
    	output_nybble(outfile, 0);
    	done_outputing_bits(outfile);
    	
    	return(stat);
    }
    /* ######################################################################### */
    /* ######################################################################### */
    /* Copyright (c) 1993 Association of Universities for Research 
     * in Astronomy. All rights reserved. Produced under National   
     * Aeronautics and Space Administration Contract No. NAS5-26555.
     */
    /* BIT OUTPUT ROUTINES */
    
    
    static LONGLONG bitcount;
    
    /* THE BIT BUFFER */
    
    static int buffer2;			/* Bits buffered for output	*/
    static int bits_to_go2;			/* Number of bits free in buffer */
    
    
    /* ######################################################################### */
    /* INITIALIZE FOR BIT OUTPUT */
    
    static void
    start_outputing_bits(void)
    {
    	buffer2 = 0;			/* Buffer is empty to start	*/
    	bits_to_go2 = 8;		/* with				*/
    	bitcount = 0;
    }
    
    /* ######################################################################### */
    /* OUTPUT N BITS (N must be <= 8) */
    
    static void
    output_nbits(char *outfile, int bits, int n)
    {
        /* AND mask for the right-most n bits */
        static int mask[9] = {0, 1, 3, 7, 15, 31, 63, 127, 255};
    	/*
    	 * insert bits at end of buffer
    	 */
    	buffer2 <<= n;
    /*	buffer2 |= ( bits & ((1<>(-bits_to_go2)) & 0xff);
    
    		if (noutchar < noutmax) noutchar++;
    		
    		bits_to_go2 += 8;
    	}
    	bitcount += n;
    }
    /* ######################################################################### */
    /*  OUTPUT a 4 bit nybble */
    static void
    output_nybble(char *outfile, int bits)
    {
    	/*
    	 * insert 4 bits at end of buffer
    	 */
    	buffer2 = (buffer2<<4) | ( bits & 15 );
    	bits_to_go2 -= 4;
    	if (bits_to_go2 <= 0) {
    		/*
    		 * buffer2 full, put out top 8 bits
    		 */
    
    	        outfile[noutchar] = ((buffer2>>(-bits_to_go2)) & 0xff);
    
    		if (noutchar < noutmax) noutchar++;
    		
    		bits_to_go2 += 8;
    	}
    	bitcount += 4;
    }
    /*  ############################################################################  */
    /* OUTPUT array of 4 BITS  */
    
    static void output_nnybble(char *outfile, int n, unsigned char array[])
    {
    	/* pack the 4 lower bits in each element of the array into the outfile array */
    
    int ii, jj, kk = 0, shift;
    
    	if (n == 1) {
    		output_nybble(outfile, (int) array[0]);
    		return;
    	}
    /* forcing byte alignment doesn;t help, and even makes it go slightly slower
    if (bits_to_go2 != 8)
       output_nbits(outfile, kk, bits_to_go2);
    */
    	if (bits_to_go2 <= 4)
    	{
    		/* just room for 1 nybble; write it out separately */
    		output_nybble(outfile, array[0]);
    		kk++;  /* index to next array element */
    
    		if (n == 2)  /* only 1 more nybble to write out */
    		{
    			output_nybble(outfile, (int) array[1]);
    			return;
    		}
    	}
    
    
            /* bits_to_go2 is now in the range 5 - 8 */
    	shift = 8 - bits_to_go2;  
    
    	/* now write out pairs of nybbles; this does not affect value of bits_to_go2 */
    	jj = (n - kk) / 2;
    	
    	if (bits_to_go2 == 8) {
    	    /* special case if nybbles are aligned on byte boundary */
    	    /* this actually seems to make very little differnece in speed */
    	    buffer2 = 0;
    	    for (ii = 0; ii < jj; ii++)
    	    {
    		outfile[noutchar] = ((array[kk] & 15)<<4) | (array[kk+1] & 15);
    		kk += 2;
    		noutchar++;
    	    }
    	} else {
    	    for (ii = 0; ii < jj; ii++)
    	    {
    		buffer2 = (buffer2<<8) | ((array[kk] & 15)<<4) | (array[kk+1] & 15);
    		kk += 2;
    
    		/*
    		 buffer2 full, put out top 8 bits
    		 */
    
    	        outfile[noutchar] = ((buffer2>>shift) & 0xff);
    		noutchar++;
    	    }
    	}
    
    	bitcount += (8 * (ii - 1));
    
    	/* write out last odd nybble, if present */
    	if (kk != n) output_nybble(outfile, (int) array[n - 1]); 
    
    	return; 
    }
    
    
    /* ######################################################################### */
    /* FLUSH OUT THE LAST BITS */
    
    static void
    done_outputing_bits(char *outfile)
    {
    	if(bits_to_go2 < 8) {
    /*		putc(buffer2<nqy) ? nqx : nqy;
    	log2n = (int) (log((float) nqmax)/log(2.0)+0.5);
    	if (nqmax > (1<= 0; bit--) {
    		/*
    		 * initial bit buffer
    		 */
    		b = 0;
    		bitbuffer = 0;
    		bits_to_go3 = 0;
    		/*
    		 * on first pass copy A to scratch array
    		 */
    		qtree_onebit(a,n,nqx,nqy,scratch,bit);
    		nx = (nqx+1)>>1;
    		ny = (nqy+1)>>1;
    		/*
    		 * copy non-zero values to output buffer, which will be written
    		 * in reverse order
    		 */
    		if (bufcopy(scratch,nx*ny,buffer,&b,bmax)) {
    			/*
    			 * quadtree is expanding data,
    			 * change warning code and just fill buffer with bit-map
    			 */
    			write_bdirect(outfile,a,n,nqx,nqy,scratch,bit);
    			goto bitplane_done;
    		}
    		/*
    		 * do log2n reductions
    		 */
    		for (k = 1; k>1;
    			ny = (ny+1)>>1;
    			if (bufcopy(scratch,nx*ny,buffer,&b,bmax)) {
    				write_bdirect(outfile,a,n,nqx,nqy,scratch,bit);
    				goto bitplane_done;
    			}
    		}
    		/*
    		 * OK, we've got the code in buffer
    		 * Write quadtree warning code, then write buffer in reverse order
    		 */
    		output_nybble(outfile,0xF);
    		if (b==0) {
    			if (bits_to_go3>0) {
    				/*
    				 * put out the last few bits
    				 */
    				output_nbits(outfile, bitbuffer & ((1<0) {
    				/*
    				 * put out the last few bits
    				 */
    				output_nbits(outfile, bitbuffer & ((1<=0; i--) {
    				output_nbits(outfile,buffer[i],8);
    			}
    		}
    		bitplane_done: ;
    	}
    	free(buffer);
    	free(scratch);
    	return(0);
    }
    /* ######################################################################### */
    static int
    qtree_encode64(char *outfile, LONGLONG a[], int n, int nqx, int nqy, int nbitplanes)
    {
    
    /*
    LONGLONG a[];
    int n;								 physical dimension of row in a		
    int nqx;							 length of row			
    int nqy;							 length of column (<=n)				
    int nbitplanes;						 number of bit planes to output	
    */
    	
    int log2n, i, k, bit, b, nqmax, nqx2, nqy2, nx, ny;
    int bmax;  /* this potentially needs to be made a 64-bit int to support large arrays */
    unsigned char *scratch, *buffer;
    
    	/*
    	 * log2n is log2 of max(nqx,nqy) rounded up to next power of 2
    	 */
    	nqmax = (nqx>nqy) ? nqx : nqy;
    	log2n = (int) (log((float) nqmax)/log(2.0)+0.5);
    	if (nqmax > (1<= 0; bit--) {
    		/*
    		 * initial bit buffer
    		 */
    		b = 0;
    		bitbuffer = 0;
    		bits_to_go3 = 0;
    		/*
    		 * on first pass copy A to scratch array
    		 */
    		qtree_onebit64(a,n,nqx,nqy,scratch,bit);
    		nx = (nqx+1)>>1;
    		ny = (nqy+1)>>1;
    		/*
    		 * copy non-zero values to output buffer, which will be written
    		 * in reverse order
    		 */
    		if (bufcopy(scratch,nx*ny,buffer,&b,bmax)) {
    			/*
    			 * quadtree is expanding data,
    			 * change warning code and just fill buffer with bit-map
    			 */
    			write_bdirect64(outfile,a,n,nqx,nqy,scratch,bit);
    			goto bitplane_done;
    		}
    		/*
    		 * do log2n reductions
    		 */
    		for (k = 1; k>1;
    			ny = (ny+1)>>1;
    			if (bufcopy(scratch,nx*ny,buffer,&b,bmax)) {
    				write_bdirect64(outfile,a,n,nqx,nqy,scratch,bit);
    				goto bitplane_done;
    			}
    		}
    		/*
    		 * OK, we've got the code in buffer
    		 * Write quadtree warning code, then write buffer in reverse order
    		 */
    		output_nybble(outfile,0xF);
    		if (b==0) {
    			if (bits_to_go3>0) {
    				/*
    				 * put out the last few bits
    				 */
    				output_nbits(outfile, bitbuffer & ((1<0) {
    				/*
    				 * put out the last few bits
    				 */
    				output_nbits(outfile, bitbuffer & ((1<=0; i--) {
    				output_nbits(outfile,buffer[i],8);
    			}
    		}
    		bitplane_done: ;
    	}
    	free(buffer);
    	free(scratch);
    	return(0);
    }
    
    /* ######################################################################### */
    /*
     * copy non-zero codes from array to buffer
     */
    static int
    bufcopy(unsigned char a[], int n, unsigned char buffer[], int *b, int bmax)
    {
    int i;
    
    	for (i = 0; i < n; i++) {
    		if (a[i] != 0) {
    			/*
    			 * add Huffman code for a[i] to buffer
    			 */
    			bitbuffer |= code[a[i]] << bits_to_go3;
    			bits_to_go3 += ncode[a[i]];
    			if (bits_to_go3 >= 8) {
    				buffer[*b] = bitbuffer & 0xFF;
    				*b += 1;
    				/*
    				 * return warning code if we fill buffer
    				 */
    				if (*b >= bmax) return(1);
    				bitbuffer >>= 8;
    				bits_to_go3 -= 8;
    			}
    		}
    	}
    	return(0);
    }
    
    /* ######################################################################### */
    /*
     * Do first quadtree reduction step on bit BIT of array A.
     * Results put into B.
     * 
     */
    static void
    qtree_onebit(int a[], int n, int nx, int ny, unsigned char b[], int bit)
    {
    int i, j, k;
    int b0, b1, b2, b3;
    int s10, s00;
    
    	/*
    	 * use selected bit to get amount to shift
    	 */
    	b0 = 1<> bit;
    
    			k += 1;
    			s00 += 2;
    			s10 += 2;
    		}
    		if (j < ny) {
    			/*
    			 * row size is odd, do last element in row
    			 * s00+1,s10+1 are off edge
    			 */
    			b[k] = ( ((a[s10  ]<<1) & b1)
    				   | ((a[s00  ]<<3) & b3) ) >> bit;
    			k += 1;
    		}
    	}
    	if (i < nx) {
    		/*
    		 * column size is odd, do last row
    		 * s10,s10+1 are off edge
    		 */
    		s00 = n*i;
    		for (j = 0; j> bit;
    			k += 1;
    			s00 += 2;
    		}
    		if (j < ny) {
    			/*
    			 * both row and column size are odd, do corner element
    			 * s00+1, s10, s10+1 are off edge
    			 */
    			b[k] = ( ((a[s00  ]<<3) & b3) ) >> bit;
    			k += 1;
    		}
    	}
    }
    /* ######################################################################### */
    /*
     * Do first quadtree reduction step on bit BIT of array A.
     * Results put into B.
     * 
     */
    static void
    qtree_onebit64(LONGLONG a[], int n, int nx, int ny, unsigned char b[], int bit)
    {
    int i, j, k;
    LONGLONG b0, b1, b2, b3;
    int s10, s00;
    
    	/*
    	 * use selected bit to get amount to shift
    	 */
    	b0 = ((LONGLONG) 1)<> bit);
    			k += 1;
    			s00 += 2;
    			s10 += 2;
    		}
    		if (j < ny) {
    			/*
    			 * row size is odd, do last element in row
    			 * s00+1,s10+1 are off edge
    			 */
    			b[k] = (unsigned char) (( ((a[s10  ]<<1) & b1)
    				   | ((a[s00  ]<<3) & b3) ) >> bit);
    			k += 1;
    		}
    	}
    	if (i < nx) {
    		/*
    		 * column size is odd, do last row
    		 * s10,s10+1 are off edge
    		 */
    		s00 = n*i;
    		for (j = 0; j> bit);
    			k += 1;
    			s00 += 2;
    		}
    		if (j < ny) {
    			/*
    			 * both row and column size are odd, do corner element
    			 * s00+1, s10, s10+1 are off edge
    			 */
    			b[k] = (unsigned char) (( ((a[s00  ]<<3) & b3) ) >> bit);
    			k += 1;
    		}
    	}
    }
    
    /* ######################################################################### */
    /*
     * do one quadtree reduction step on array a
     * results put into b (which may be the same as a)
     */
    static void
    qtree_reduce(unsigned char a[], int n, int nx, int ny, unsigned char b[])
    {
    int i, j, k;
    int s10, s00;
    
    	k = 0;							/* k is index of b[i/2,j/2]	*/
    	for (i = 0; i		/* this is necessary for Solaris/Linux */
    #include 
    #include 
    
    #ifdef _AIX
    #include 
    #else
    #include 
    #endif
    
    		/* configuration parameters */
    
    #define	SHARED_MAXSEG	(16)		/* maximum number of shared memory blocks */
    
    #define	SHARED_KEYBASE	(14011963)	/* base for shared memory keys, may be overriden by getenv */
    #define	SHARED_FDNAME	("/tmp/.shmem-lockfile") /* template for lock file name */
    
    #define	SHARED_ENV_KEYBASE ("SHMEM_LIB_KEYBASE") /* name of environment variable */
    #define	SHARED_ENV_MAXSEG ("SHMEM_LIB_MAXSEG")	/* name of environment variable */
    
    		/* useful constants */
    
    #define	SHARED_RDONLY	(0)		/* flag for shared_(un)lock, lock for read */
    #define	SHARED_RDWRITE	(1)		/* flag for shared_(un)lock, lock for write */
    #define	SHARED_WAIT	(0)		/* flag for shared_lock, block if cannot lock immediate */
    #define	SHARED_NOWAIT	(2)		/* flag for shared_lock, fail if cannot lock immediate */
    #define	SHARED_NOLOCK	(0x100)		/* flag for shared_validate function */
    
    #define	SHARED_RESIZE	(4)		/* flag for shared_malloc, object is resizeable */
    #define	SHARED_PERSIST	(8)		/* flag for shared_malloc, object is not deleted after last proc detaches */
    
    #define	SHARED_INVALID	(-1)		/* invalid handle for semaphore/shared memory */
    
    #define	SHARED_EMPTY	(0)		/* entries for shared_used table */
    #define	SHARED_USED	(1)
    
    #define	SHARED_GRANUL	(16384)		/* granularity of shared_malloc allocation = phys page size, system dependent */
    
    
    
    		/* checkpoints in shared memory segments - might be omitted */
    
    #define	SHARED_ID_0	('J')		/* first byte of identifier in BLKHEAD */
    #define	SHARED_ID_1	('B')		/* second byte of identifier in BLKHEAD */
    
    #define	BLOCK_REG	(0)		/* value for tflag member of BLKHEAD */
    #define	BLOCK_SHARED	(1)		/* value for tflag member of BLKHEAD */
    
    		/* generic error codes */
    
    #define	SHARED_OK	(0)
    
    #define	SHARED_ERR_MIN_IDX	SHARED_BADARG
    #define	SHARED_ERR_MAX_IDX	SHARED_NORESIZE
    
    
    #define	DAL_SHM_FREE	(0)
    #define	DAL_SHM_USED	(1)
    
    #define	DAL_SHM_ID0	('D')
    #define	DAL_SHM_ID1	('S')
    #define	DAL_SHM_ID2	('M')
    
    #define	DAL_SHM_SEGHEAD_ID	(0x19630114)
    
    
    
    		/* data types */
    
    /* BLKHEAD object is placed at the beginning of every memory segment (both
      shared and regular) to allow automatic recognition of segments type */
    
    typedef union
          { struct BLKHEADstruct
    	      {	char	ID[2];		/* ID = 'JB', just as a checkpoint */
    		char	tflag;		/* is it shared memory or regular one ? */
    		int	handle;		/* this is not necessary, used only for non-resizeable objects via ptr */
    	      } s;
    	double	d;			/* for proper alignment on every machine */
          } BLKHEAD;
    
    typedef void *SHARED_P;			/* generic type of shared memory pointer */
    
    typedef	struct SHARED_GTABstruct	/* data type used in global table */
          {	int	sem;			/* access semaphore (1 field): process count */
    	int	semkey;			/* key value used to generate semaphore handle */
    	int	key;			/* key value used to generate shared memory handle (realloc changes it) */
    	int	handle;			/* handle of shared memory segment */
    	int	size;			/* size of shared memory segment */
    	int	nprocdebug;		/* attached proc counter, helps remove zombie segments */
    	char	attr;			/* attributes of shared memory object */
          } SHARED_GTAB;
    
    typedef	struct SHARED_LTABstruct	/* data type used in local table */
          {	BLKHEAD	*p;			/* pointer to segment (may be null) */
    	int	tcnt;			/* number of threads in this process attached to segment */
    	int	lkcnt;			/* >=0 <- number of read locks, -1 - write lock */
    	long	seekpos;		/* current pointer position, read/write/seek operations change it */
          } SHARED_LTAB;
    
    
    	/* system dependent definitions */
    
    #ifndef HAVE_FLOCK_T
    typedef struct flock flock_t;
    #define HAVE_FLOCK_T
    #endif
    
    #ifndef HAVE_UNION_SEMUN
    union semun
          {	int val;
    	struct semid_ds *buf;
    	unsigned short *array;
          };
    #define HAVE_UNION_SEMUN
    #endif
    
    
    typedef struct DAL_SHM_SEGHEAD_STRUCT	DAL_SHM_SEGHEAD;
    
    struct DAL_SHM_SEGHEAD_STRUCT
          {	int	ID;			/* ID for debugging */
    	int	h;			/* handle of sh. mem */
    	int	size;			/* size of data area */
    	int	nodeidx;		/* offset of root object (node struct typically) */
          };
    
    		/* API routines */
    
    #ifdef __cplusplus
    extern "C" {
    #endif
    
    void	shared_cleanup(void);			/* must be called at exit/abort */
    int	shared_init(int debug_msgs);		/* must be called before any other shared memory routine */
    int	shared_recover(int id);			/* try to recover dormant segment(s) after applic crash */
    int	shared_malloc(long size, int mode, int newhandle);	/* allocate n-bytes of shared memory */
    int	shared_attach(int idx);			/* attach to segment given index to table */
    int	shared_free(int idx);			/* release shared memory */
    SHARED_P shared_lock(int idx, int mode);	/* lock segment for reading */
    SHARED_P shared_realloc(int idx, long newsize);	/* reallocate n-bytes of shared memory (ON LOCKED SEGMENT ONLY) */
    int	shared_size(int idx);			/* get size of attached shared memory segment (ON LOCKED SEGMENT ONLY) */
    int	shared_attr(int idx);			/* get attributes of attached shared memory segment (ON LOCKED SEGMENT ONLY) */
    int	shared_set_attr(int idx, int newattr);	/* set attributes of attached shared memory segment (ON LOCKED SEGMENT ONLY) */
    int	shared_unlock(int idx);			/* unlock segment (ON LOCKED SEGMENT ONLY) */
    int	shared_set_debug(int debug_msgs);	/* set/reset debug mode */
    int	shared_set_createmode(int mode);	/* set/reset debug mode */
    int	shared_list(int id);			/* list segment(s) */
    int	shared_uncond_delete(int id);		/* uncondintionally delete (NOWAIT operation) segment(s) */
    int	shared_getaddr(int id, char **address);	/* get starting address of FITS file in segment */
    
    int	smem_init(void);
    int	smem_shutdown(void);
    int	smem_setoptions(int options);
    int	smem_getoptions(int *options);
    int	smem_getversion(int *version);
    int	smem_open(char *filename, int rwmode, int *driverhandle);
    int	smem_create(char *filename, int *driverhandle);
    int	smem_close(int driverhandle);
    int	smem_remove(char *filename);
    int	smem_size(int driverhandle, LONGLONG *size);
    int	smem_flush(int driverhandle);
    int	smem_seek(int driverhandle, LONGLONG offset);
    int	smem_read(int driverhandle, void *buffer, long nbytes);
    int	smem_write(int driverhandle, void *buffer, long nbytes);
    
    #ifdef __cplusplus
    }
    #endif
    healpy-1.8.1/cfitsio/getkey.c0000654000175000017530000034002412272000775016514 0ustar  zoncaplanck00000000000000/*  This file, getkey.c, contains routines that read keywords from         */
    /*  a FITS header.                                                         */
    
    /*  The FITSIO software was written by William Pence at the High Energy    */
    /*  Astrophysic Science Archive Research Center (HEASARC) at the NASA      */
    /*  Goddard Space Flight Center.                                           */
    
    #include 
    #include 
    #include 
    #include 
    /* stddef.h is apparently needed to define size_t */
    #include 
    #include "fitsio2.h"
    
    /*--------------------------------------------------------------------------*/
    int ffghsp(fitsfile *fptr,  /* I - FITS file pointer                     */
               int *nexist,     /* O - number of existing keywords in header */
               int *nmore,      /* O - how many more keywords will fit       */
               int *status)     /* IO - error status                         */
    /*
      returns the number of existing keywords (not counting the END keyword)
      and the number of more keyword that will fit in the current header 
      without having to insert more FITS blocks.
    */
    {
        if (*status > 0)
            return(*status);
    
        if (fptr->HDUposition != (fptr->Fptr)->curhdu)
            ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status);
    
        if (nexist)
            *nexist = (int) (( ((fptr->Fptr)->headend) - 
                    ((fptr->Fptr)->headstart[(fptr->Fptr)->curhdu]) ) / 80);
    
        if ((fptr->Fptr)->datastart == DATA_UNDEFINED)
        {
          if (nmore)
            *nmore = -1;   /* data not written yet, so room for any keywords */
        }
        else
        {
          /* calculate space available between the data and the END card */
          if (nmore)
            *nmore = (int) (((fptr->Fptr)->datastart - (fptr->Fptr)->headend) / 80 - 1);
        }
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffghps(fitsfile *fptr, /* I - FITS file pointer                     */
              int *nexist,     /* O - number of existing keywords in header */
              int *position,   /* O - position of next keyword to be read   */
              int *status)     /* IO - error status                         */
    /*
      return the number of existing keywords and the position of the next
      keyword that will be read.
    */
    {
        if (*status > 0)
            return(*status);
    
        if (fptr->HDUposition != (fptr->Fptr)->curhdu)
            ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status);
    
      *nexist = (int) (( ((fptr->Fptr)->headend) - ((fptr->Fptr)->headstart[(fptr->Fptr)->curhdu]) ) / 80);
      *position = (int) (( ((fptr->Fptr)->nextkey) - ((fptr->Fptr)->headstart[(fptr->Fptr)->curhdu]) ) / 80 + 1);
      return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffnchk(fitsfile *fptr,  /* I - FITS file pointer                     */
               int *status)     /* IO - error status                         */
    /*
      function returns the position of the first null character (ASCII 0), if
      any, in the current header.  Null characters are illegal, but the other
      CFITSIO routines that read the header will not detect this error, because
      the null gets interpreted as a normal end of string character.
    */
    {
        long ii, nblock;
        LONGLONG bytepos;
        int length, nullpos;
        char block[2881];
        
        if (*status > 0)
            return(*status);
    
        if (fptr->HDUposition != (fptr->Fptr)->curhdu)
            ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status);
    
        if ((fptr->Fptr)->datastart == DATA_UNDEFINED)
        {
            return(0);  /* Don't check a file that is just being created.  */
                        /* It cannot contain nulls since CFITSIO wrote it. */
        }
        else
        {
            /* calculate number of blocks in the header */
            nblock = (long) (( (fptr->Fptr)->datastart - 
                       (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu] ) / 2880);
        }
    
        bytepos = (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu];
        ffmbyt(fptr, bytepos, REPORT_EOF, status);  /* move to read pos. */
    
        block[2880] = '\0';
        for (ii = 0; ii < nblock; ii++)
        {
            if (ffgbyt(fptr, 2880, block, status) > 0)
                return(0);   /* read error of some sort */
    
            length = strlen(block);
            if (length != 2880)
            {
                nullpos = (ii * 2880) + length + 1;
                return(nullpos);
            }
        }
    
        return(0);
    }
    /*--------------------------------------------------------------------------*/
    int ffmaky(fitsfile *fptr,    /* I - FITS file pointer                    */
              int nrec,           /* I - one-based keyword number to move to  */
              int *status)        /* IO - error status                        */
    {
    /*
      move pointer to the specified absolute keyword position.  E.g. this keyword 
      will then be read by the next call to ffgnky.
    */
        if (fptr->HDUposition != (fptr->Fptr)->curhdu)
            ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status);
    
        (fptr->Fptr)->nextkey = (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu] + ( (nrec - 1) * 80);
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffmrky(fitsfile *fptr,    /* I - FITS file pointer                   */
              int nmove,          /* I - relative number of keywords to move */
              int *status)        /* IO - error status                       */
    {
    /*
      move pointer to the specified keyword position relative to the current
      position.  E.g. this keyword  will then be read by the next call to ffgnky.
    */
    
        if (fptr->HDUposition != (fptr->Fptr)->curhdu)
            ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status);
    
        (fptr->Fptr)->nextkey += (nmove * 80);
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgnky(fitsfile *fptr,  /* I - FITS file pointer     */
               char *card,      /* O - card string           */
               int *status)     /* IO - error status         */
    /*
      read the next keyword from the header - used internally by cfitsio
    */
    {
        int jj, nrec;
        LONGLONG bytepos, endhead;
        char message[FLEN_ERRMSG];
    
        if (*status > 0)
            return(*status);
    
        if (fptr->HDUposition != (fptr->Fptr)->curhdu)
            ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status);
    
        card[0] = '\0';  /* make sure card is terminated, even affer read error */
    
    /*
      Check that nextkey points to a legal keyword position.  Note that headend
      is the current end of the header, i.e., the position where a new keyword
      would be appended, however, if there are more than 1 FITS block worth of
      blank keywords at the end of the header (36 keywords per 2880 byte block)
      then the actual physical END card must be located at a starting position
      which is just 2880 bytes prior to the start of the data unit.
    */
    
        bytepos = (fptr->Fptr)->nextkey;
        endhead = maxvalue( ((fptr->Fptr)->headend), ((fptr->Fptr)->datastart - 2880) );
    
        /* nextkey must be < endhead and > than  headstart */
        if (bytepos > endhead ||  
            bytepos < (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu] ) 
        {
            nrec= (int) ((bytepos - (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu]) / 80 + 1);
            sprintf(message, "Cannot get keyword number %d.  It does not exist.",
                    nrec);
            ffpmsg(message);
            return(*status = KEY_OUT_BOUNDS);
        }
          
        ffmbyt(fptr, bytepos, REPORT_EOF, status);  /* move to read pos. */
    
        card[80] = '\0';  /* make sure card is terminate, even if ffgbyt fails */
    
        if (ffgbyt(fptr, 80, card, status) <= 0) 
        {
            (fptr->Fptr)->nextkey += 80;   /* increment pointer to next keyword */
    
            /* strip off trailing blanks with terminated string */
            jj = 79;
            while (jj >= 0 && card[jj] == ' ')
                   jj--;
    
            card[jj + 1] = '\0';
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgnxk( fitsfile *fptr,     /* I - FITS file pointer              */
                char **inclist,     /* I - list of included keyword names */
                int ninc,           /* I - number of names in inclist     */
                char **exclist,     /* I - list of excluded keyword names */
                int nexc,           /* I - number of names in exclist     */
                char *card,         /* O - first matching keyword         */
                int  *status)       /* IO - error status                  */
    /*
        Return the next keyword that matches one of the names in inclist
        but does not match any of the names in exclist.  The search
        goes from the current position to the end of the header, only.
        Wild card characters may be used in the name lists ('*', '?' and '#').
    */
    {
        int casesn, match, exact, namelen;
        long ii, jj;
        char keybuf[FLEN_CARD], keyname[FLEN_KEYWORD];
    
        card[0] = '\0';
        if (*status > 0)
            return(*status);
    
        casesn = FALSE;
    
        /* get next card, and return with an error if hit end of header */
        while( ffgcrd(fptr, "*", keybuf, status) <= 0)
        {
            ffgknm(keybuf, keyname, &namelen, status); /* get the keyword name */
            
            /* does keyword match any names in the include list? */
            for (ii = 0; ii < ninc; ii++)
            {
                ffcmps(inclist[ii], keyname, casesn, &match, &exact);
                if (match)
                {
                    /* does keyword match any names in the exclusion list? */
                    jj = -1;
                    while ( ++jj < nexc )
                    {
                        ffcmps(exclist[jj], keyname, casesn, &match, &exact);
                        if (match)
                            break;
                    }
    
                    if (jj >= nexc)
                    {
                        /* not in exclusion list, so return this keyword */
                        strcat(card, keybuf);
                        return(*status);
                    }
                }
            }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgky( fitsfile *fptr,     /* I - FITS file pointer        */
               int  datatype,      /* I - datatype of the value    */
               const char *keyname,      /* I - name of keyword to read  */
               void *value,        /* O - keyword value            */
               char *comm,         /* O - keyword comment          */
               int  *status)       /* IO - error status            */
    /*
      Read (get) the keyword value and comment from the FITS header.
      Reads a keyword value with the datatype specified by the 2nd argument.
    */
    {
        long longval;
        double doubleval;
    
        if (*status > 0)           /* inherit input status value if > 0 */
            return(*status);
    
        if (datatype == TSTRING)
        {
            ffgkys(fptr, keyname, (char *) value, comm, status);
        }
        else if (datatype == TBYTE)
        {
            if (ffgkyj(fptr, keyname, &longval, comm, status) <= 0)
            {
                if (longval > UCHAR_MAX || longval < 0)
                    *status = NUM_OVERFLOW;
                else
                    *(unsigned char *) value = (unsigned char) longval;
            }
        }
        else if (datatype == TSBYTE)
        {
            if (ffgkyj(fptr, keyname, &longval, comm, status) <= 0)
            {
                if (longval > 127 || longval < -128)
                    *status = NUM_OVERFLOW;
                else
                    *(signed char *) value = (signed char) longval;
            }
        }
        else if (datatype == TUSHORT)
        {
            if (ffgkyj(fptr, keyname, &longval, comm, status) <= 0)
            {
                if (longval > (long) USHRT_MAX || longval < 0)
                    *status = NUM_OVERFLOW;
                else
                    *(unsigned short *) value = (unsigned short) longval;
            }
        }
        else if (datatype == TSHORT)
        {
            if (ffgkyj(fptr, keyname, &longval, comm, status) <= 0)
            {
                if (longval > SHRT_MAX || longval < SHRT_MIN)
                    *status = NUM_OVERFLOW;
                else
                    *(short *) value = (short) longval;
            }
        }
        else if (datatype == TUINT)
        {
            if (ffgkyj(fptr, keyname, &longval, comm, status) <= 0)
            {
                if (longval > (long) UINT_MAX || longval < 0)
                    *status = NUM_OVERFLOW;
                else
                    *(unsigned int *) value = longval;
            }
        }
        else if (datatype == TINT)
        {
            if (ffgkyj(fptr, keyname, &longval, comm, status) <= 0)
            {
                if (longval > INT_MAX || longval < INT_MIN)
                    *status = NUM_OVERFLOW;
                else
                    *(int *) value = longval;
            }
        }
        else if (datatype == TLOGICAL)
        {
            ffgkyl(fptr, keyname, (int *) value, comm, status);
        }
        else if (datatype == TULONG)
        {
            if (ffgkyd(fptr, keyname, &doubleval, comm, status) <= 0)
            {
                if (doubleval > (double) ULONG_MAX || doubleval < 0)
                    *status = NUM_OVERFLOW;
                else
                     *(unsigned long *) value = (unsigned long) doubleval;
            }
        }
        else if (datatype == TLONG)
        {
            ffgkyj(fptr, keyname, (long *) value, comm, status);
        }
        else if (datatype == TLONGLONG)
        {
            ffgkyjj(fptr, keyname, (LONGLONG *) value, comm, status);
        }
        else if (datatype == TFLOAT)
        {
            ffgkye(fptr, keyname, (float *) value, comm, status);
        }
        else if (datatype == TDOUBLE)
        {
            ffgkyd(fptr, keyname, (double *) value, comm, status);
        }
        else if (datatype == TCOMPLEX)
        {
            ffgkyc(fptr, keyname, (float *) value, comm, status);
        }
        else if (datatype == TDBLCOMPLEX)
        {
            ffgkym(fptr, keyname, (double *) value, comm, status);
        }
        else
            *status = BAD_DATATYPE;
    
        return(*status);
    } 
    /*--------------------------------------------------------------------------*/
    int ffgkey( fitsfile *fptr,     /* I - FITS file pointer        */
                const char *keyname,      /* I - name of keyword to read  */
                char *keyval,       /* O - keyword value            */
                char *comm,         /* O - keyword comment          */
                int  *status)       /* IO - error status            */
    /*
      Read (get) the named keyword, returning the keyword value and comment.
      The value is just the literal string of characters in the value field
      of the keyword.  In the case of a string valued keyword, the returned
      value includes the leading and closing quote characters.  The value may be
      up to 70 characters long, and the comment may be up to 72 characters long.
      If the keyword has no value (no equal sign in column 9) then a null value
      is returned.
    */
    {
        char card[FLEN_CARD];
    
        keyval[0] = '\0';
        if (comm)
           comm[0] = '\0';
    
        if (*status > 0)
            return(*status);
    
        if (ffgcrd(fptr, keyname, card, status) > 0)    /* get the 80-byte card */
            return(*status);
    
        ffpsvc(card, keyval, comm, status);      /* parse the value and comment */
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgrec( fitsfile *fptr,     /* I - FITS file pointer          */
                int nrec,           /* I - number of keyword to read  */
                char *card,         /* O - keyword card               */
                int  *status)       /* IO - error status              */
    /*
      Read (get) the nrec-th keyword, returning the entire keyword card up to
      80 characters long.  The first keyword in the header has nrec = 1, not 0.
      The returned card value is null terminated with any trailing blank 
      characters removed.  If nrec = 0, then this routine simply moves the
      current header pointer to the top of the header.
    */
    {
        if (*status > 0)
            return(*status);
    
        if (nrec == 0)
        {
            ffmaky(fptr, 1, status);  /* simply move to beginning of header */
            if (card)
                card[0] = '\0';           /* and return null card */
        }
        else if (nrec > 0)
        {
            ffmaky(fptr, nrec, status);
            ffgnky(fptr, card, status);
        }
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgcrd( fitsfile *fptr,     /* I - FITS file pointer        */
                const char *name,         /* I - name of keyword to read  */
                char *card,         /* O - keyword card             */
                int  *status)       /* IO - error status            */
    /*
      Read (get) the named keyword, returning the entire keyword card up to
      80 characters long.  
      The returned card value is null terminated with any trailing blank 
      characters removed.
    
      If the input name contains wild cards ('?' matches any single char
      and '*' matches any sequence of chars, # matches any string of decimal
      digits) then the search ends once the end of header is reached and does 
      not automatically resume from the top of the header.
    */
    {
        int nkeys, nextkey, ntodo, namelen, namelen_limit, namelenminus1, cardlen;
        int ii = 0, jj, kk, wild, match, exact, hier = 0;
        char keyname[FLEN_KEYWORD], cardname[FLEN_KEYWORD];
        char *ptr1, *ptr2, *gotstar;
    
        if (*status > 0)
            return(*status);
    
        *keyname = '\0';
        
        while (name[ii] == ' ')  /* skip leading blanks in name */
            ii++;
    
        strncat(keyname, &name[ii], FLEN_KEYWORD - 1);
    
        namelen = strlen(keyname);
    
        while (namelen > 0 && keyname[namelen - 1] == ' ')
             namelen--;            /* ignore trailing blanks in name */
    
        keyname[namelen] = '\0';  /* terminate the name */
    
        for (ii=0; ii < namelen; ii++)       
            keyname[ii] = toupper(keyname[ii]);    /*  make upper case  */
    
        if (FSTRNCMP("HIERARCH", keyname, 8) == 0)
        {
            if (namelen == 8)
            {
                /* special case: just looking for any HIERARCH keyword */
                hier = 1;
            }
            else
            {
                /* ignore the leading HIERARCH and look for the 'real' name */
                /* starting with first non-blank character following HIERARCH */
                ptr1 = keyname;
                ptr2 = &keyname[8];
    
                while(*ptr2 == ' ')
                    ptr2++;
    
                namelen = 0;
                while(*ptr2)
                {
                    *ptr1 = *ptr2;
                     ptr1++;
                     ptr2++;
                     namelen++;
                }
                *ptr1 = '\0';
            }
        }
    
        /* does input name contain wild card chars?  ('?',  '*', or '#') */
        /* wild cards are currently not supported with HIERARCH keywords */
    
        namelen_limit = namelen;
        gotstar = 0;
        if (namelen < 9 && 
           (strchr(keyname,'?') || (gotstar = strchr(keyname,'*')) || 
            strchr(keyname,'#')) )
        {
            wild = 1;
    
            /* if we found a '*' wild card in the name, there might be */
            /* more than one.  Support up to 2 '*' in the template. */
            /* Thus we need to compare keywords whose names have at least */
            /* namelen - 2 characters.                                   */
            if (gotstar)
               namelen_limit -= 2;           
        }
        else
            wild = 0;
    
        ffghps(fptr, &nkeys, &nextkey, status); /* get no. keywords and position */
    
        namelenminus1 = maxvalue(namelen - 1, 1);
        ntodo = nkeys - nextkey + 1;  /* first, read from next keyword to end */
        for (jj=0; jj < 2; jj++)
        {
          for (kk = 0; kk < ntodo; kk++)
          {
            ffgnky(fptr, card, status);     /* get next keyword */
    
            if (hier)
            {
               if (FSTRNCMP("HIERARCH", card, 8) == 0)
                    return(*status);  /* found a HIERARCH keyword */
            }
            else
            {
              ffgknm(card, cardname, &cardlen, status); /* get the keyword name */
    
              if (cardlen >= namelen_limit)  /* can't match if card < name */
              { 
                /* if there are no wild cards, lengths must be the same */
                if (!( !wild && cardlen != namelen) )
                {
                  for (ii=0; ii < cardlen; ii++)
                  {    
                    /* make sure keyword is in uppercase */
                    if (cardname[ii] > 96)
                    {
                      /* This assumes the ASCII character set in which */
                      /* upper case characters start at ASCII(97)  */
                      /* Timing tests showed that this is 20% faster */
                      /* than calling the isupper function.          */
    
                      cardname[ii] = toupper(cardname[ii]);  /* make upper case */
                    }
                  }
    
                  if (wild)
                  {
                    ffcmps(keyname, cardname, 1, &match, &exact);
                    if (match)
                        return(*status); /* found a matching keyword */
                  }
                  else if (keyname[namelenminus1] == cardname[namelenminus1])
                  {
                    /* test the last character of the keyword name first, on */
                    /* the theory that it is less likely to match then the first */
                    /* character since many keywords begin with 'T', for example */
    
                    if (FSTRNCMP(keyname, cardname, namelenminus1) == 0)
                    {
                      return(*status);   /* found the matching keyword */
                    }
                  }
    	      else if (namelen == 0 && cardlen == 0)
    	      {
    	         /* matched a blank keyword */
    		 return(*status);
    	      }
                }
              }
            }
          }
    
          if (wild || jj == 1)
                break;  /* stop at end of header if template contains wildcards */
    
          ffmaky(fptr, 1, status);  /* reset pointer to beginning of header */
          ntodo = nextkey - 1;      /* number of keyword to read */ 
        }
    
        return(*status = KEY_NO_EXIST);  /* couldn't find the keyword */
    }
    /*--------------------------------------------------------------------------*/
    int ffgstr( fitsfile *fptr,     /* I - FITS file pointer        */
                const char *string, /* I - string to match  */
                char *card,         /* O - keyword card             */
                int  *status)       /* IO - error status            */
    /*
      Read (get) the next keyword record that contains the input character string,
      returning the entire keyword card up to 80 characters long.
      The returned card value is null terminated with any trailing blank 
      characters removed.
    */
    {
        int nkeys, nextkey, ntodo, stringlen;
        int jj, kk;
    
        if (*status > 0)
            return(*status);
    
        stringlen = strlen(string);
        if (stringlen > 80) {
            return(*status = KEY_NO_EXIST);  /* matching string is too long to exist */
        }
    
        ffghps(fptr, &nkeys, &nextkey, status); /* get no. keywords and position */
        ntodo = nkeys - nextkey + 1;  /* first, read from next keyword to end */
    
        for (jj=0; jj < 2; jj++)
        {
          for (kk = 0; kk < ntodo; kk++)
          {
            ffgnky(fptr, card, status);     /* get next keyword */
            if (strstr(card, string) != 0) {
                return(*status);   /* found the matching string */
            }
          }
    
          ffmaky(fptr, 1, status);  /* reset pointer to beginning of header */
          ntodo = nextkey - 1;      /* number of keyword to read */ 
        }
    
        return(*status = KEY_NO_EXIST);  /* couldn't find the keyword */
    }
    /*--------------------------------------------------------------------------*/
    int ffgknm( char *card,         /* I - keyword card                   */
                char *name,         /* O - name of the keyword            */
                int *length,        /* O - length of the keyword name     */
                int  *status)       /* IO - error status                  */
    
    /*
      Return the name of the keyword, and the name length.  This supports the
      ESO HIERARCH convention where keyword names may be > 8 characters long.
    */
    {
        char *ptr1, *ptr2;
        int ii;
    
        *name = '\0';
        *length = 0;
    
        /* support for ESO HIERARCH keywords; find the '=' */
        if (FSTRNCMP(card, "HIERARCH ", 9) == 0)
        {
            ptr2 = strchr(card, '=');
    
            if (!ptr2)   /* no value indicator ??? */
            {
                /* this probably indicates an error, so just return FITS name */
                strcat(name, "HIERARCH");
                *length = 8;
                return(*status);
            }
    
            /* find the start and end of the HIERARCH name */
            ptr1 = &card[9];
            while (*ptr1 == ' ')   /* skip spaces */
                ptr1++;
    
            strncat(name, ptr1, ptr2 - ptr1);
            ii = ptr2 - ptr1;
    
            while (ii > 0 && name[ii - 1] == ' ')  /* remove trailing spaces */
                ii--;
    
            name[ii] = '\0';
            *length = ii;
        }
        else
        {
            for (ii = 0; ii < 8; ii++)
            {
               /* look for string terminator, or a blank */
               if (*(card+ii) != ' ' && *(card+ii) !='\0')
               {
                   *(name+ii) = *(card+ii);
               }
               else
               {
                   name[ii] = '\0';
                   *length = ii;
                   return(*status);
               }
            }
    
            /* if we got here, keyword is 8 characters long */
            name[8] = '\0';
            *length = 8;
        }
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgunt( fitsfile *fptr,     /* I - FITS file pointer         */
                const char *keyname,      /* I - name of keyword to read   */
                char *unit,         /* O - keyword units             */
                int  *status)       /* IO - error status             */
    /*
        Read (get) the units string from the comment field of the existing
        keyword. This routine uses a local FITS convention (not defined in the
        official FITS standard) in which the units are enclosed in 
        square brackets following the '/' comment field delimiter, e.g.:
    
        KEYWORD =                   12 / [kpc] comment string goes here
    */
    {
        char valstring[FLEN_VALUE];
        char comm[FLEN_COMMENT];
        char *loc;
    
        if (*status > 0)
            return(*status);
    
        ffgkey(fptr, keyname, valstring, comm, status);  /* read the keyword */
    
        if (comm[0] == '[')
        {
            loc = strchr(comm, ']');   /*  find the closing bracket */
            if (loc)
                *loc = '\0';           /*  terminate the string */
    
            strcpy(unit, &comm[1]);    /*  copy the string */
         }
         else
            unit[0] = '\0';
     
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgkys( fitsfile *fptr,     /* I - FITS file pointer         */
                const char *keyname,      /* I - name of keyword to read   */
                char *value,        /* O - keyword value             */
                char *comm,         /* O - keyword comment           */
                int  *status)       /* IO - error status             */
    /*
      Get KeYword with a String value:
      Read (get) a simple string valued keyword.  The returned value may be up to 
      68 chars long ( + 1 null terminator char).  The routine does not support the
      HEASARC convention for continuing long string values over multiple keywords.
      The ffgkls routine may be used to read long continued strings. The returned
      comment string may be up to 69 characters long (including null terminator).
    */
    {
        char valstring[FLEN_VALUE];
    
        if (*status > 0)
            return(*status);
    
        ffgkey(fptr, keyname, valstring, comm, status);  /* read the keyword */
        value[0] = '\0';
        ffc2s(valstring, value, status);   /* remove quotes from string */
     
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgkls( fitsfile *fptr,     /* I - FITS file pointer         */
                const char *keyname,      /* I - name of keyword to read   */
                char **value,       /* O - pointer to keyword value  */
                char *comm,         /* O - keyword comment           */
                int  *status)       /* IO - error status             */
    /*
      Get Keyword with possible Long String value:
      Read (get) the named keyword, returning the value and comment.
      The returned value string may be arbitrarily long (by using the HEASARC
      convention for continuing long string values over multiple keywords) so
      this routine allocates the required memory for the returned string value.
      It is up to the calling routine to free the memory once it is finished
      with the value string.  The returned comment string may be up to 69
      characters long.
    */
    {
        char valstring[FLEN_VALUE];
        int contin;
        size_t len;
    
        if (*status > 0)
            return(*status);
    
        *value = NULL;  /* initialize a null pointer in case of error */
    
        ffgkey(fptr, keyname, valstring, comm, status);  /* read the keyword */
    
        if (*status > 0)
            return(*status);
    
        if (!valstring[0])   /* null value string? */
        {
          *value = (char *) malloc(1);  /* allocate and return a null string */
          **value = '\0';
        }
        else
        {
          /* allocate space,  plus 1 for null */
          *value = (char *) malloc(strlen(valstring) + 1);
    
          ffc2s(valstring, *value, status);   /* convert string to value */
          len = strlen(*value);
    
          /* If last character is a & then value may be continued on next keyword */
          contin = 1;
          while (contin)  
          {
            if (len && *(*value+len-1) == '&')  /*  is last char an anpersand?  */
            {
                ffgcnt(fptr, valstring, status);
                if (*valstring)    /* a null valstring indicates no continuation */
                {
                   *(*value+len-1) = '\0';         /* erase the trailing & char */
                   len += strlen(valstring) - 1;
                   *value = (char *) realloc(*value, len + 1); /* increase size */
                   strcat(*value, valstring);     /* append the continued chars */
                }
                else
                    contin = 0;
            }
            else
                contin = 0;
          }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int fffree( void *value,       /* I - pointer to keyword value  */
                int  *status)      /* IO - error status             */
    /*
      Free the memory that was previously allocated by CFITSIO, 
      such as by ffgkls or fits_hdr2str
    */
    {
        if (*status > 0)
            return(*status);
    
        if (value)
            free(value);
    
        return(*status);
    }
     /*--------------------------------------------------------------------------*/
    int ffgcnt( fitsfile *fptr,     /* I - FITS file pointer         */
                char *value,        /* O - continued string value    */
                int  *status)       /* IO - error status             */
    /*
      Attempt to read the next keyword, returning the string value
      if it is a continuation of the previous string keyword value.
      This uses the HEASARC convention for continuing long string values
      over multiple keywords.  Each continued string is terminated with a
      backslash character, and the continuation follows on the next keyword
      which must have the name CONTINUE without an equal sign in column 9
      of the card.  If the next card is not a continuation, then the returned
      value string will be null.
    */
    {
        int tstatus;
        char card[FLEN_CARD], strval[FLEN_VALUE], comm[FLEN_COMMENT];
    
        if (*status > 0)
            return(*status);
    
        tstatus = 0;
        value[0] = '\0';
    
        if (ffgnky(fptr, card, &tstatus) > 0)  /*  read next keyword  */
            return(*status);                   /*  hit end of header  */
    
        if (strncmp(card, "CONTINUE  ", 10) == 0)  /* a continuation card? */
        {
            strncpy(card, "D2345678=  ", 10); /* overwrite a dummy keyword name */
            ffpsvc(card, strval, comm, &tstatus);  /*  get the string value  */
            ffc2s(strval, value, &tstatus);    /* remove the surrounding quotes */
    
            if (tstatus)       /*  return null if error status was returned  */
               value[0] = '\0';
        }
        else
            ffmrky(fptr, -1, status);  /* reset the keyword pointer */
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgkyl( fitsfile *fptr,     /* I - FITS file pointer         */
                const char *keyname,      /* I - name of keyword to read   */
                int  *value,        /* O - keyword value             */
                char *comm,         /* O - keyword comment           */
                int  *status)       /* IO - error status             */
    /*
      Read (get) the named keyword, returning the value and comment.
      The returned value = 1 if the keyword is true, else = 0 if false.
      The comment may be up to 69 characters long.
    */
    {
        char valstring[FLEN_VALUE];
    
        if (*status > 0)
            return(*status);
    
        ffgkey(fptr, keyname, valstring, comm, status);  /* read the keyword */
        ffc2l(valstring, value, status);   /* convert string to value */
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgkyj( fitsfile *fptr,     /* I - FITS file pointer         */
                const char *keyname,      /* I - name of keyword to read   */
                long *value,        /* O - keyword value             */
                char *comm,         /* O - keyword comment           */
                int  *status)       /* IO - error status             */
    /*
      Read (get) the named keyword, returning the value and comment.
      The value will be implicitly converted to a (long) integer if it not
      already of this datatype.  The comment may be up to 69 characters long.
    */
    {
        char valstring[FLEN_VALUE];
    
        if (*status > 0)
            return(*status);
    
        ffgkey(fptr, keyname, valstring, comm, status);  /* read the keyword */
        ffc2i(valstring, value, status);   /* convert string to value */
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgkyjj( fitsfile *fptr,     /* I - FITS file pointer         */
                const char *keyname,      /* I - name of keyword to read   */
                LONGLONG *value,    /* O - keyword value             */
                char *comm,         /* O - keyword comment           */
                int  *status)       /* IO - error status             */
    /*
      Read (get) the named keyword, returning the value and comment.
      The value will be implicitly converted to a (long) integer if it not
      already of this datatype.  The comment may be up to 69 characters long.
    */
    {
        char valstring[FLEN_VALUE];
    
        if (*status > 0)
            return(*status);
    
        ffgkey(fptr, keyname, valstring, comm, status);  /* read the keyword */
        ffc2j(valstring, value, status);   /* convert string to value */
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgkye( fitsfile *fptr,     /* I - FITS file pointer         */
                const char  *keyname,     /* I - name of keyword to read   */
                float *value,       /* O - keyword value             */
                char  *comm,        /* O - keyword comment           */
                int   *status)      /* IO - error status             */
    /*
      Read (get) the named keyword, returning the value and comment.
      The value will be implicitly converted to a float if it not
      already of this datatype.  The comment may be up to 69 characters long.
    */
    {
        char valstring[FLEN_VALUE];
    
        if (*status > 0)
            return(*status);
    
        ffgkey(fptr, keyname, valstring, comm, status);  /* read the keyword */
        ffc2r(valstring, value, status);   /* convert string to value */
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgkyd( fitsfile *fptr,      /* I - FITS file pointer         */
                const char   *keyname,     /* I - name of keyword to read   */
                double *value,       /* O - keyword value             */
                char   *comm,        /* O - keyword comment           */
                int    *status)      /* IO - error status             */
    /*
      Read (get) the named keyword, returning the value and comment.
      The value will be implicitly converted to a double if it not
      already of this datatype.  The comment may be up to 69 characters long.
    */
    {
        char valstring[FLEN_VALUE];
    
        if (*status > 0)
            return(*status);
    
        ffgkey(fptr, keyname, valstring, comm, status);  /* read the keyword */
        ffc2d(valstring, value, status);   /* convert string to value */
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgkyc( fitsfile *fptr,     /* I - FITS file pointer         */
                const char  *keyname,     /* I - name of keyword to read   */
                float *value,       /* O - keyword value (real,imag) */
                char  *comm,        /* O - keyword comment           */
                int   *status)      /* IO - error status             */
    /*
      Read (get) the named keyword, returning the value and comment.
      The keyword must have a complex value. No implicit data conversion
      will be performed.
    */
    {
        char valstring[FLEN_VALUE], message[81];
        int len;
    
        if (*status > 0)
            return(*status);
    
        ffgkey(fptr, keyname, valstring, comm, status);  /* read the keyword */
    
        if (valstring[0] != '(' )   /* test that this is a complex keyword */
        {
          sprintf(message, "keyword %s does not have a complex value (ffgkyc):",
                  keyname);
          ffpmsg(message);
          ffpmsg(valstring);
          return(*status = BAD_C2F);
        }
    
        valstring[0] = ' ';            /* delete the opening parenthesis */
        len = strcspn(valstring, ")" );  
        valstring[len] = '\0';         /* delete the closing parenthesis */
    
        len = strcspn(valstring, ",");
        valstring[len] = '\0';
    
        ffc2r(valstring, &value[0], status);       /* convert the real part */
        ffc2r(&valstring[len + 1], &value[1], status); /* convert imag. part */
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgkym( fitsfile *fptr,     /* I - FITS file pointer         */
                const char  *keyname,     /* I - name of keyword to read   */
                double *value,      /* O - keyword value (real,imag) */
                char  *comm,        /* O - keyword comment           */
                int   *status)      /* IO - error status             */
    /*
      Read (get) the named keyword, returning the value and comment.
      The keyword must have a complex value. No implicit data conversion
      will be performed.
    */
    {
        char valstring[FLEN_VALUE], message[81];
        int len;
    
        if (*status > 0)
            return(*status);
    
        ffgkey(fptr, keyname, valstring, comm, status);  /* read the keyword */
    
        if (valstring[0] != '(' )   /* test that this is a complex keyword */
        {
          sprintf(message, "keyword %s does not have a complex value (ffgkym):",
                  keyname);
          ffpmsg(message);
          ffpmsg(valstring);
          return(*status = BAD_C2D);
        }
    
        valstring[0] = ' ';            /* delete the opening parenthesis */
        len = strcspn(valstring, ")" );  
        valstring[len] = '\0';         /* delete the closing parenthesis */
    
        len = strcspn(valstring, ",");
        valstring[len] = '\0';
    
        ffc2d(valstring, &value[0], status);        /* convert the real part */
        ffc2d(&valstring[len + 1], &value[1], status);  /* convert the imag. part */
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgkyt( fitsfile *fptr,      /* I - FITS file pointer                 */
                const char   *keyname,     /* I - name of keyword to read           */
                long   *ivalue,      /* O - integer part of keyword value     */
                double *fraction,    /* O - fractional part of keyword value  */
                char   *comm,        /* O - keyword comment                   */
                int    *status)      /* IO - error status                     */
    /*
      Read (get) the named keyword, returning the value and comment.
      The integer and fractional parts of the value are returned in separate
      variables, to allow more numerical precision to be passed.  This
      effectively passes a 'triple' precision value, with a 4-byte integer
      and an 8-byte fraction.  The comment may be up to 69 characters long.
    */
    {
        char valstring[FLEN_VALUE];
        char *loc;
    
        if (*status > 0)
            return(*status);
    
        ffgkey(fptr, keyname, valstring, comm, status);  /* read the keyword */
    
        /*  read the entire value string as a double, to get the integer part */
        ffc2d(valstring, fraction, status);
    
        *ivalue = (long) *fraction;
    
        *fraction = *fraction - *ivalue;
    
        /* see if we need to read the fractional part again with more precision */
        /* look for decimal point, without an exponential E or D character */
    
        loc = strchr(valstring, '.');
        if (loc)
        {
            if (!strchr(valstring, 'E') && !strchr(valstring, 'D'))
                ffc2d(loc, fraction, status);
        }
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgkyn( fitsfile *fptr,      /* I - FITS file pointer             */
                int    nkey,         /* I - number of the keyword to read */
                char   *keyname,     /* O - name of the keyword           */
                char   *value,       /* O - keyword value                 */
                char   *comm,        /* O - keyword comment               */
                int    *status)      /* IO - error status                 */
    /*
      Read (get) the nkey-th keyword returning the keyword name, value and comment.
      The value is just the literal string of characters in the value field
      of the keyword.  In the case of a string valued keyword, the returned
      value includes the leading and closing quote characters.  The value may be
      up to 70 characters long, and the comment may be up to 72 characters long.
      If the keyword has no value (no equal sign in column 9) then a null value
      is returned.  If comm = NULL, then do not return the comment string.
    */
    {
        char card[FLEN_CARD], sbuff[FLEN_CARD];
        int namelen;
    
        keyname[0] = '\0';
        value[0] = '\0';
        if (comm)
            comm[0] = '\0';
    
        if (*status > 0)
            return(*status);
    
        if (ffgrec(fptr, nkey, card, status) > 0 )  /* get the 80-byte card */
            return(*status);
    
        ffgknm(card, keyname, &namelen, status); /* get the keyword name */
    
        if (ffpsvc(card, value, comm, status) > 0)   /* parse value and comment */
            return(*status);
    
        if (fftrec(keyname, status) > 0)  /* test keyword name; catches no END */
        {
         sprintf(sbuff,"Name of keyword no. %d contains illegal character(s): %s",
                  nkey, keyname);
         ffpmsg(sbuff);
    
         if (nkey % 36 == 0)  /* test if at beginning of 36-card FITS record */
                ffpmsg("  (This may indicate a missing END keyword).");
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgkns( fitsfile *fptr,     /* I - FITS file pointer                    */
                const char *keyname,      /* I - root name of keywords to read        */
                int  nstart,        /* I - starting index number                */
                int  nmax,          /* I - maximum number of keywords to return */
                char *value[],      /* O - array of pointers to keyword values  */
                int  *nfound,       /* O - number of values that were returned  */
                int  *status)       /* IO - error status                        */
    /*
      Read (get) an indexed array of keywords with index numbers between
      NSTART and (NSTART + NMAX -1) inclusive.  
      This routine does NOT support the HEASARC long string convention.
    */
    {
        int nend, lenroot, ii, nkeys, mkeys, tstatus, undefinedval;
        long ival;
        char keyroot[FLEN_KEYWORD], keyindex[8], card[FLEN_CARD];
        char svalue[FLEN_VALUE], comm[FLEN_COMMENT];
    
        if (*status > 0)
            return(*status);
    
        *nfound = 0;
        nend = nstart + nmax - 1;
    
        keyroot[0] = '\0';
        strncat(keyroot, keyname, 8);
         
        lenroot = strlen(keyroot);
        if (lenroot == 0 || lenroot > 7)     /*  root must be 1 - 7 chars long  */
            return(*status);
    
        for (ii=0; ii < lenroot; ii++)           /*  make sure upper case  */
            keyroot[ii] = toupper(keyroot[ii]);
    
        ffghps(fptr, &nkeys, &mkeys, status);  /*  get the number of keywords  */
    
        undefinedval = FALSE;
        for (ii=3; ii <= nkeys; ii++)  
        {
           if (ffgrec(fptr, ii, card, status) > 0)     /*  get next keyword  */
               return(*status);
    
           if (strncmp(keyroot, card, lenroot) == 0)  /* see if keyword matches */
           {
              keyindex[0] = '\0';
              strncat(keyindex, &card[lenroot], 8-lenroot);  /*  copy suffix */
    
              tstatus = 0;
              if (ffc2ii(keyindex, &ival, &tstatus) <= 0)     /*  test suffix  */
              {
                 if (ival <= nend && ival >= nstart)
                 {
                    ffpsvc(card, svalue, comm, status);  /*  parse the value */
                    ffc2s(svalue, value[ival-nstart], status); /* convert */
                    if (ival - nstart + 1 > *nfound)
                          *nfound = ival - nstart + 1;  /*  max found */ 
    
                    if (*status == VALUE_UNDEFINED)
                    {
                       undefinedval = TRUE;
                       *status = 0;  /* reset status to read remaining values */
                    }
                 }
              }
           }
        }
        if (undefinedval && (*status <= 0) )
            *status = VALUE_UNDEFINED;  /* report at least 1 value undefined */
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgknl( fitsfile *fptr,     /* I - FITS file pointer                    */
                const char *keyname,      /* I - root name of keywords to read        */
                int  nstart,        /* I - starting index number                */
                int  nmax,          /* I - maximum number of keywords to return */
                int  *value,        /* O - array of keyword values              */
                int  *nfound,       /* O - number of values that were returned  */
                int  *status)       /* IO - error status                        */
    /*
      Read (get) an indexed array of keywords with index numbers between
      NSTART and (NSTART + NMAX -1) inclusive.  
      The returned value = 1 if the keyword is true, else = 0 if false.
    */
    {
        int nend, lenroot, ii, nkeys, mkeys, tstatus, undefinedval;
        long ival;
        char keyroot[FLEN_KEYWORD], keyindex[8], card[FLEN_CARD];
        char svalue[FLEN_VALUE], comm[FLEN_COMMENT];
    
        if (*status > 0)
            return(*status);
    
        *nfound = 0;
        nend = nstart + nmax - 1;
    
        keyroot[0] = '\0';
        strncat(keyroot, keyname, 8);
    
        lenroot = strlen(keyroot);
        if (lenroot == 0 || lenroot > 7)     /*  root must be 1 - 7 chars long  */
            return(*status);
    
        for (ii=0; ii < lenroot; ii++)           /*  make sure upper case  */
            keyroot[ii] = toupper(keyroot[ii]);
    
        ffghps(fptr, &nkeys, &mkeys, status);  /*  get the number of keywords  */
    
        ffmaky(fptr, 3, status);  /* move to 3rd keyword (skip 1st 2 keywords) */
    
        undefinedval = FALSE;
        for (ii=3; ii <= nkeys; ii++)  
        {
           if (ffgnky(fptr, card, status) > 0)     /*  get next keyword  */
               return(*status);
    
           if (strncmp(keyroot, card, lenroot) == 0)  /* see if keyword matches */
           {
              keyindex[0] = '\0';
              strncat(keyindex, &card[lenroot], 8-lenroot);  /*  copy suffix */
    
              tstatus = 0;
              if (ffc2ii(keyindex, &ival, &tstatus) <= 0)    /*  test suffix  */
              {
                 if (ival <= nend && ival >= nstart)
                 {
                    ffpsvc(card, svalue, comm, status);   /*  parse the value */
                    ffc2l(svalue, &value[ival-nstart], status); /* convert*/
                    if (ival - nstart + 1 > *nfound)
                          *nfound = ival - nstart + 1;  /*  max found */ 
    
                    if (*status == VALUE_UNDEFINED)
                    {
                        undefinedval = TRUE;
                       *status = 0;  /* reset status to read remaining values */
                    }
                 }
              }
           }
        }
        if (undefinedval && (*status <= 0) )
            *status = VALUE_UNDEFINED;  /* report at least 1 value undefined */
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgknj( fitsfile *fptr,     /* I - FITS file pointer                    */
                const char *keyname,      /* I - root name of keywords to read        */
                int  nstart,        /* I - starting index number                */
                int  nmax,          /* I - maximum number of keywords to return */
                long *value,        /* O - array of keyword values              */
                int  *nfound,       /* O - number of values that were returned  */
                int  *status)       /* IO - error status                        */
    /*
      Read (get) an indexed array of keywords with index numbers between
      NSTART and (NSTART + NMAX -1) inclusive.  
    */
    {
        int nend, lenroot, ii, nkeys, mkeys, tstatus, undefinedval;
        long ival;
        char keyroot[FLEN_KEYWORD], keyindex[8], card[FLEN_CARD];
        char svalue[FLEN_VALUE], comm[FLEN_COMMENT];
    
        if (*status > 0)
            return(*status);
    
        *nfound = 0;
        nend = nstart + nmax - 1;
    
        keyroot[0] = '\0';
        strncat(keyroot, keyname, 8);
    
        lenroot = strlen(keyroot);
        if (lenroot == 0 || lenroot > 7)     /* root must be 1 - 7 chars long */
            return(*status);
    
        for (ii=0; ii < lenroot; ii++)           /*  make sure upper case  */
            keyroot[ii] = toupper(keyroot[ii]);
    
        ffghps(fptr, &nkeys, &mkeys, status);  /*  get the number of keywords  */
    
        ffmaky(fptr, 3, status);  /* move to 3rd keyword (skip 1st 2 keywords) */
    
        undefinedval = FALSE;
        for (ii=3; ii <= nkeys; ii++)  
        {
           if (ffgnky(fptr, card, status) > 0)     /*  get next keyword  */
               return(*status);
    
           if (strncmp(keyroot, card, lenroot) == 0)  /* see if keyword matches */
           {
              keyindex[0] = '\0';
              strncat(keyindex, &card[lenroot], 8-lenroot);  /*  copy suffix */
    
              tstatus = 0;
              if (ffc2ii(keyindex, &ival, &tstatus) <= 0)     /*  test suffix  */
              {
                 if (ival <= nend && ival >= nstart)
                 {
                    ffpsvc(card, svalue, comm, status);   /*  parse the value */
                    ffc2i(svalue, &value[ival-nstart], status);  /* convert */
                    if (ival - nstart + 1 > *nfound)
                          *nfound = ival - nstart + 1;  /*  max found */ 
    
                    if (*status == VALUE_UNDEFINED)
                    {
                        undefinedval = TRUE;
                       *status = 0;  /* reset status to read remaining values */
                    }
                 }
              }
           }
        }
        if (undefinedval && (*status <= 0) )
            *status = VALUE_UNDEFINED;  /* report at least 1 value undefined */
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgknjj( fitsfile *fptr,    /* I - FITS file pointer                    */
                const char *keyname,      /* I - root name of keywords to read        */
                int  nstart,        /* I - starting index number                */
                int  nmax,          /* I - maximum number of keywords to return */
                LONGLONG *value,    /* O - array of keyword values              */
                int  *nfound,       /* O - number of values that were returned  */
                int  *status)       /* IO - error status                        */
    /*
      Read (get) an indexed array of keywords with index numbers between
      NSTART and (NSTART + NMAX -1) inclusive.  
    */
    {
        int nend, lenroot, ii, nkeys, mkeys, tstatus, undefinedval;
        long ival;
        char keyroot[FLEN_KEYWORD], keyindex[8], card[FLEN_CARD];
        char svalue[FLEN_VALUE], comm[FLEN_COMMENT];
    
        if (*status > 0)
            return(*status);
    
        *nfound = 0;
        nend = nstart + nmax - 1;
    
        keyroot[0] = '\0';
        strncat(keyroot, keyname, 8);
    
        lenroot = strlen(keyroot);
        if (lenroot == 0 || lenroot > 7)     /* root must be 1 - 7 chars long */
            return(*status);
    
        for (ii=0; ii < lenroot; ii++)           /*  make sure upper case  */
            keyroot[ii] = toupper(keyroot[ii]);
    
        ffghps(fptr, &nkeys, &mkeys, status);  /*  get the number of keywords  */
    
        ffmaky(fptr, 3, status);  /* move to 3rd keyword (skip 1st 2 keywords) */
    
        undefinedval = FALSE;
        for (ii=3; ii <= nkeys; ii++)  
        {
           if (ffgnky(fptr, card, status) > 0)     /*  get next keyword  */
               return(*status);
    
           if (strncmp(keyroot, card, lenroot) == 0)  /* see if keyword matches */
           {
              keyindex[0] = '\0';
              strncat(keyindex, &card[lenroot], 8-lenroot);  /*  copy suffix */
    
              tstatus = 0;
              if (ffc2ii(keyindex, &ival, &tstatus) <= 0)     /*  test suffix  */
              {
                 if (ival <= nend && ival >= nstart)
                 {
                    ffpsvc(card, svalue, comm, status);   /*  parse the value */
                    ffc2j(svalue, &value[ival-nstart], status);  /* convert */
                    if (ival - nstart + 1 > *nfound)
                          *nfound = ival - nstart + 1;  /*  max found */ 
    
                    if (*status == VALUE_UNDEFINED)
                    {
                        undefinedval = TRUE;
                       *status = 0;  /* reset status to read remaining values */
                    }
                 }
              }
           }
        }
        if (undefinedval && (*status <= 0) )
            *status = VALUE_UNDEFINED;  /* report at least 1 value undefined */
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgkne( fitsfile *fptr,     /* I - FITS file pointer                    */
                const char *keyname,      /* I - root name of keywords to read        */
                int  nstart,        /* I - starting index number                */
                int  nmax,          /* I - maximum number of keywords to return */
                float *value,       /* O - array of keyword values              */
                int  *nfound,       /* O - number of values that were returned  */
                int  *status)       /* IO - error status                        */
    /*
      Read (get) an indexed array of keywords with index numbers between
      NSTART and (NSTART + NMAX -1) inclusive.  
    */
    {
        int nend, lenroot, ii, nkeys, mkeys, tstatus, undefinedval;
        long ival;
        char keyroot[FLEN_KEYWORD], keyindex[8], card[FLEN_CARD];
        char svalue[FLEN_VALUE], comm[FLEN_COMMENT];
    
        if (*status > 0)
            return(*status);
    
        *nfound = 0;
        nend = nstart + nmax - 1;
    
        keyroot[0] = '\0';
        strncat(keyroot, keyname, 8);
    
        lenroot = strlen(keyroot);
        if (lenroot == 0 || lenroot > 7)     /*  root must be 1 - 7 chars long  */
            return(*status);
    
        for (ii=0; ii < lenroot; ii++)           /*  make sure upper case  */
            keyroot[ii] = toupper(keyroot[ii]);
    
        ffghps(fptr, &nkeys, &mkeys, status);  /*  get the number of keywords  */
    
        ffmaky(fptr, 3, status);  /* move to 3rd keyword (skip 1st 2 keywords) */
    
        undefinedval = FALSE;
        for (ii=3; ii <= nkeys; ii++)  
        {
           if (ffgnky(fptr, card, status) > 0)     /*  get next keyword  */
               return(*status);
    
           if (strncmp(keyroot, card, lenroot) == 0)  /* see if keyword matches */
           {
              keyindex[0] = '\0';
              strncat(keyindex, &card[lenroot], 8-lenroot);  /*  copy suffix */
    
              tstatus = 0;
              if (ffc2ii(keyindex, &ival, &tstatus) <= 0)     /*  test suffix  */
              {
                 if (ival <= nend && ival >= nstart)
                 {
                    ffpsvc(card, svalue, comm, status);   /*  parse the value */
                    ffc2r(svalue, &value[ival-nstart], status); /* convert */
                    if (ival - nstart + 1 > *nfound)
                          *nfound = ival - nstart + 1;  /*  max found */ 
    
                    if (*status == VALUE_UNDEFINED)
                    {
                        undefinedval = TRUE;
                       *status = 0;  /* reset status to read remaining values */
                    }
                 }
              }
           }
        }
        if (undefinedval && (*status <= 0) )
            *status = VALUE_UNDEFINED;  /* report at least 1 value undefined */
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgknd( fitsfile *fptr,     /* I - FITS file pointer                    */
                const char *keyname,      /* I - root name of keywords to read        */
                int  nstart,        /* I - starting index number                */
                int  nmax,          /* I - maximum number of keywords to return */
                double *value,      /* O - array of keyword values              */
                int  *nfound,       /* O - number of values that were returned  */
                int  *status)       /* IO - error status                        */
    /*
      Read (get) an indexed array of keywords with index numbers between
      NSTART and (NSTART + NMAX -1) inclusive.  
    */
    {
        int nend, lenroot, ii, nkeys, mkeys, tstatus, undefinedval;
        long ival;
        char keyroot[FLEN_KEYWORD], keyindex[8], card[FLEN_CARD];
        char svalue[FLEN_VALUE], comm[FLEN_COMMENT];
    
        if (*status > 0)
            return(*status);
    
        *nfound = 0;
        nend = nstart + nmax - 1;
    
        keyroot[0] = '\0';
        strncat(keyroot, keyname, 8);
    
        lenroot = strlen(keyroot);
        if (lenroot == 0 || lenroot > 7)     /*  root must be 1 - 7 chars long  */
            return(*status);
    
        for (ii=0; ii < lenroot; ii++)           /*  make sure upper case  */
            keyroot[ii] = toupper(keyroot[ii]);
    
        ffghps(fptr, &nkeys, &mkeys, status);  /*  get the number of keywords  */
    
        ffmaky(fptr, 3, status);  /* move to 3rd keyword (skip 1st 2 keywords) */
    
        undefinedval = FALSE;
        for (ii=3; ii <= nkeys; ii++)  
        {
           if (ffgnky(fptr, card, status) > 0)     /*  get next keyword  */
               return(*status);
    
           if (strncmp(keyroot, card, lenroot) == 0)   /* see if keyword matches */
           {
              keyindex[0] = '\0';
              strncat(keyindex, &card[lenroot], 8-lenroot);  /*  copy suffix */
    
              tstatus = 0;
              if (ffc2ii(keyindex, &ival, &tstatus) <= 0)      /*  test suffix */
              {
                 if (ival <= nend && ival >= nstart) /* is index within range? */
                 {
                    ffpsvc(card, svalue, comm, status);   /*  parse the value */
                    ffc2d(svalue, &value[ival-nstart], status); /* convert */
                    if (ival - nstart + 1 > *nfound)
                          *nfound = ival - nstart + 1;  /*  max found */ 
    
                    if (*status == VALUE_UNDEFINED)
                    {
                        undefinedval = TRUE;
                       *status = 0;  /* reset status to read remaining values */
                    }
                 }
              }
           }
        }
        if (undefinedval && (*status <= 0) )
            *status = VALUE_UNDEFINED;  /* report at least 1 value undefined */
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgtdm(fitsfile *fptr,  /* I - FITS file pointer                        */
               int colnum,      /* I - number of the column to read             */
               int maxdim,      /* I - maximum no. of dimensions to read;       */
               int *naxis,      /* O - number of axes in the data array         */
               long naxes[],    /* O - length of each data axis                 */
               int *status)     /* IO - error status                            */
    /*
      read and parse the TDIMnnn keyword to get the dimensionality of a column
    */
    {
        int tstatus = 0;
        char keyname[FLEN_KEYWORD], tdimstr[FLEN_VALUE];
    
        if (*status > 0)
            return(*status);
    
        ffkeyn("TDIM", colnum, keyname, status);      /* construct keyword name */
    
        ffgkys(fptr, keyname, tdimstr, NULL, &tstatus); /* try reading keyword */
    
        ffdtdm(fptr, tdimstr, colnum, maxdim,naxis, naxes, status); /* decode it */
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgtdmll(fitsfile *fptr,  /* I - FITS file pointer                      */
               int colnum,      /* I - number of the column to read             */
               int maxdim,      /* I - maximum no. of dimensions to read;       */
               int *naxis,      /* O - number of axes in the data array         */
               LONGLONG naxes[], /* O - length of each data axis                 */
               int *status)     /* IO - error status                            */
    /*
      read and parse the TDIMnnn keyword to get the dimensionality of a column
    */
    {
        int tstatus = 0;
        char keyname[FLEN_KEYWORD], tdimstr[FLEN_VALUE];
    
        if (*status > 0)
            return(*status);
    
        ffkeyn("TDIM", colnum, keyname, status);      /* construct keyword name */
    
        ffgkys(fptr, keyname, tdimstr, NULL, &tstatus); /* try reading keyword */
    
        ffdtdmll(fptr, tdimstr, colnum, maxdim,naxis, naxes, status); /* decode it */
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffdtdm(fitsfile *fptr,  /* I - FITS file pointer                        */
               char *tdimstr,   /* I - TDIMn keyword value string. e.g. (10,10) */
               int colnum,      /* I - number of the column             */
               int maxdim,      /* I - maximum no. of dimensions to read;       */
               int *naxis,      /* O - number of axes in the data array         */
               long naxes[],    /* O - length of each data axis                 */
               int *status)     /* IO - error status                            */
    /*
      decode the TDIMnnn keyword to get the dimensionality of a column.
      Check that the value is legal and consistent with the TFORM value.
      If colnum = 0, then the validity checking is disabled.
    */
    {
        long dimsize, totalpix = 1;
        char *loc, *lastloc, message[81];
        tcolumn *colptr = 0;
    
        if (*status > 0)
            return(*status);
    
        if (colnum != 0) {
            if (fptr->HDUposition != (fptr->Fptr)->curhdu)
                ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status);
    
            if (colnum < 1 || colnum > (fptr->Fptr)->tfield)
                return(*status = BAD_COL_NUM);
    
            colptr = (fptr->Fptr)->tableptr;   /* set pointer to the first column */
            colptr += (colnum - 1);    /* increment to the correct column */
    
            if (!tdimstr[0])   /* TDIMn keyword doesn't exist? */
            {
                *naxis = 1;                   /* default = 1 dimensional */
                if (maxdim > 0)
                    naxes[0] = (long) colptr->trepeat; /* default length = repeat */
    
                return(*status);
            }
        }
    
        *naxis = 0;
    
        loc = strchr(tdimstr, '(' );  /* find the opening quote */
        if (!loc)
        {
                sprintf(message, "Illegal dimensions format: %s", tdimstr);
                return(*status = BAD_TDIM);
        }
    
        while (loc)
        {
                loc++;
                dimsize = strtol(loc, &loc, 10);  /* read size of next dimension */
                if (*naxis < maxdim)
                    naxes[*naxis] = dimsize;
    
                if (dimsize < 0)
                {
                    ffpmsg("one or more dimension are less than 0 (ffdtdm)");
                    ffpmsg(tdimstr);
                    return(*status = BAD_TDIM);
                }
    
                totalpix *= dimsize;
                (*naxis)++;
                lastloc = loc;
                loc = strchr(loc, ',');  /* look for comma before next dimension */
        }
    
        loc = strchr(lastloc, ')' );  /* check for the closing quote */
        if (!loc)
        {
                sprintf(message, "Illegal dimensions format: %s", tdimstr);
                return(*status = BAD_TDIM);
        }
    
        if (colnum != 0) {
            if ((colptr->tdatatype > 0) && ((long) colptr->trepeat != totalpix))
            {
              sprintf(message,
              "column vector length, %ld, does not equal TDIMn array size, %ld",
              (long) colptr->trepeat, totalpix);
              ffpmsg(message);
              ffpmsg(tdimstr);
              return(*status = BAD_TDIM);
            }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffdtdmll(fitsfile *fptr,  /* I - FITS file pointer                        */
               char *tdimstr,   /* I - TDIMn keyword value string. e.g. (10,10) */
               int colnum,      /* I - number of the column             */
               int maxdim,      /* I - maximum no. of dimensions to read;       */
               int *naxis,      /* O - number of axes in the data array         */
               LONGLONG naxes[],    /* O - length of each data axis                 */
               int *status)     /* IO - error status                            */
    /*
      decode the TDIMnnn keyword to get the dimensionality of a column.
      Check that the value is legal and consistent with the TFORM value.
    */
    {
        LONGLONG dimsize;
        LONGLONG totalpix = 1;
        char *loc, *lastloc, message[81];
        tcolumn *colptr;
        double doublesize;
    
        if (*status > 0)
            return(*status);
    
        if (fptr->HDUposition != (fptr->Fptr)->curhdu)
            ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status);
    
        if (colnum < 1 || colnum > (fptr->Fptr)->tfield)
            return(*status = BAD_COL_NUM);
    
        colptr = (fptr->Fptr)->tableptr;   /* set pointer to the first column */
        colptr += (colnum - 1);    /* increment to the correct column */
    
        if (!tdimstr[0])   /* TDIMn keyword doesn't exist? */
        {
            *naxis = 1;                   /* default = 1 dimensional */
            if (maxdim > 0)
                naxes[0] = colptr->trepeat; /* default length = repeat */
        }
        else
        {
            *naxis = 0;
    
            loc = strchr(tdimstr, '(' );  /* find the opening quote */
            if (!loc)
            {
                sprintf(message, "Illegal TDIM keyword value: %s", tdimstr);
                return(*status = BAD_TDIM);
            }
    
            while (loc)
            {
                loc++;
    
        /* Read value as a double because the string to 64-bit int function is  */
        /* platform dependent (strtoll, strtol, _atoI64).  This still gives     */
        /* about 48 bits of precision, which is plenty for this purpose.        */
    
                doublesize = strtod(loc, &loc);
                dimsize = (LONGLONG) (doublesize + 0.1);
    
                if (*naxis < maxdim)
                    naxes[*naxis] = dimsize;
    
                if (dimsize < 0)
                {
                    ffpmsg("one or more TDIM values are less than 0 (ffdtdm)");
                    ffpmsg(tdimstr);
                    return(*status = BAD_TDIM);
                }
    
                totalpix *= dimsize;
                (*naxis)++;
                lastloc = loc;
                loc = strchr(loc, ',');  /* look for comma before next dimension */
            }
    
            loc = strchr(lastloc, ')' );  /* check for the closing quote */
            if (!loc)
            {
                sprintf(message, "Illegal TDIM keyword value: %s", tdimstr);
                return(*status = BAD_TDIM);
            }
    
            if ((colptr->tdatatype > 0) && (colptr->trepeat != totalpix))
            {
              sprintf(message,
              "column vector length, %.0f, does not equal TDIMn array size, %.0f",
              (double) (colptr->trepeat), (double) totalpix);
              ffpmsg(message);
              ffpmsg(tdimstr);
              return(*status = BAD_TDIM);
            }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffghpr(fitsfile *fptr,  /* I - FITS file pointer                        */
               int maxdim,      /* I - maximum no. of dimensions to read;       */
               int *simple,     /* O - does file conform to FITS standard? 1/0  */
               int *bitpix,     /* O - number of bits per data value pixel      */
               int *naxis,      /* O - number of axes in the data array         */
               long naxes[],    /* O - length of each data axis                 */
               long *pcount,    /* O - number of group parameters (usually 0)   */
               long *gcount,    /* O - number of random groups (usually 1 or 0) */
               int *extend,     /* O - may FITS file haave extensions?          */
               int *status)     /* IO - error status                            */
    /*
      Get keywords from the Header of the PRimary array:
      Check that the keywords conform to the FITS standard and return the
      parameters which determine the size and structure of the primary array
      or IMAGE extension.
    */
    {
        int idummy, ii;
        LONGLONG lldummy;
        double ddummy;
        LONGLONG tnaxes[99];
    
        ffgphd(fptr, maxdim, simple, bitpix, naxis, tnaxes, pcount, gcount, extend,
              &ddummy, &ddummy, &lldummy, &idummy, status);
    	  
        if (naxis && naxes) {
             for (ii = 0; (ii < *naxis) && (ii < maxdim); ii++)
    	     naxes[ii] = (long) tnaxes[ii];
        } else if (naxes) {
             for (ii = 0; ii < maxdim; ii++)
    	     naxes[ii] = (long) tnaxes[ii];
        }
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffghprll(fitsfile *fptr,  /* I - FITS file pointer                        */
               int maxdim,      /* I - maximum no. of dimensions to read;       */
               int *simple,     /* O - does file conform to FITS standard? 1/0  */
               int *bitpix,     /* O - number of bits per data value pixel      */
               int *naxis,      /* O - number of axes in the data array         */
               LONGLONG naxes[],    /* O - length of each data axis                 */
               long *pcount,    /* O - number of group parameters (usually 0)   */
               long *gcount,    /* O - number of random groups (usually 1 or 0) */
               int *extend,     /* O - may FITS file haave extensions?          */
               int *status)     /* IO - error status                            */
    /*
      Get keywords from the Header of the PRimary array:
      Check that the keywords conform to the FITS standard and return the
      parameters which determine the size and structure of the primary array
      or IMAGE extension.
    */
    {
        int idummy;
        LONGLONG lldummy;
        double ddummy;
    
        ffgphd(fptr, maxdim, simple, bitpix, naxis, naxes, pcount, gcount, extend,
              &ddummy, &ddummy, &lldummy, &idummy, status);
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffghtb(fitsfile *fptr,  /* I - FITS file pointer                        */
               int maxfield,    /* I - maximum no. of columns to read;          */
               long *naxis1,    /* O - length of table row in bytes             */
               long *naxis2,    /* O - number of rows in the table              */
               int *tfields,    /* O - number of columns in the table           */
               char **ttype,    /* O - name of each column                      */
               long *tbcol,     /* O - byte offset in row to each column        */
               char **tform,    /* O - value of TFORMn keyword for each column  */
               char **tunit,    /* O - value of TUNITn keyword for each column  */
               char *extnm,   /* O - value of EXTNAME keyword, if any         */
               int *status)     /* IO - error status                            */
    /*
      Get keywords from the Header of the ASCII TaBle:
      Check that the keywords conform to the FITS standard and return the
      parameters which describe the table.
    */
    {
        int ii, maxf, nfound, tstatus;
        long fields;
        char name[FLEN_KEYWORD], value[FLEN_VALUE], comm[FLEN_COMMENT];
        char xtension[FLEN_VALUE], message[81];
        LONGLONG llnaxis1, llnaxis2, pcount;
    
        if (*status > 0)
            return(*status);
    
        /* read the first keyword of the extension */
        ffgkyn(fptr, 1, name, value, comm, status);
    
        if (!strcmp(name, "XTENSION"))
        {
                if (ffc2s(value, xtension, status) > 0)  /* get the value string */
                {
                    ffpmsg("Bad value string for XTENSION keyword:");
                    ffpmsg(value);
                    return(*status);
                }
    
                /* allow the quoted string value to begin in any column and */
                /* allow any number of trailing blanks before the closing quote */
                if ( (value[0] != '\'')   ||  /* first char must be a quote */
                     ( strcmp(xtension, "TABLE") ) )
                {
                    sprintf(message,
                    "This is not a TABLE extension: %s", value);
                    ffpmsg(message);
                    return(*status = NOT_ATABLE);
                }
        }
    
        else  /* error: 1st keyword of extension != XTENSION */
        {
            sprintf(message,
            "First keyword of the extension is not XTENSION: %s", name);
            ffpmsg(message);
            return(*status = NO_XTENSION);
        }
    
        if (ffgttb(fptr, &llnaxis1, &llnaxis2, &pcount, &fields, status) > 0)
            return(*status);
    
        if (naxis1)
           *naxis1 = (long) llnaxis1;
    
        if (naxis2)
           *naxis2 = (long) llnaxis2;
    
        if (pcount != 0)
        {
           sprintf(message, "PCOUNT = %.0f is illegal in ASCII table; must = 0",
                   (double) pcount);
           ffpmsg(message);
           return(*status = BAD_PCOUNT);
        }
    
        if (tfields)
           *tfields = fields;
    
        if (maxfield < 0)
            maxf = fields;
        else
            maxf = minvalue(maxfield, fields);
    
        if (maxf > 0)
        {
            for (ii = 0; ii < maxf; ii++)
            {   /* initialize optional keyword values */
                if (ttype)
                    *ttype[ii] = '\0';   
    
                if (tunit)
                    *tunit[ii] = '\0';
            }
    
       
            if (ttype)
                ffgkns(fptr, "TTYPE", 1, maxf, ttype, &nfound, status);
    
            if (tunit)
                ffgkns(fptr, "TUNIT", 1, maxf, tunit, &nfound, status);
    
            if (*status > 0)
                return(*status);
    
            if (tbcol)
            {
                ffgknj(fptr, "TBCOL", 1, maxf, tbcol, &nfound, status);
    
                if (*status > 0 || nfound != maxf)
                {
                    ffpmsg(
            "Required TBCOL keyword(s) not found in ASCII table header (ffghtb).");
                    return(*status = NO_TBCOL);
                }
            }
    
            if (tform)
            {
                ffgkns(fptr, "TFORM", 1, maxf, tform, &nfound, status);
    
                if (*status > 0 || nfound != maxf)
                {
                    ffpmsg(
            "Required TFORM keyword(s) not found in ASCII table header (ffghtb).");
                    return(*status = NO_TFORM);
                }
            }
        }
    
        if (extnm)
        {
            extnm[0] = '\0';
    
            tstatus = *status;
            ffgkys(fptr, "EXTNAME", extnm, comm, status);
    
            if (*status == KEY_NO_EXIST)
                *status = tstatus;  /* keyword not required, so ignore error */
        }
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffghtbll(fitsfile *fptr, /* I - FITS file pointer                        */
               int maxfield,    /* I - maximum no. of columns to read;          */
               LONGLONG *naxis1, /* O - length of table row in bytes             */
               LONGLONG *naxis2, /* O - number of rows in the table              */
               int *tfields,    /* O - number of columns in the table           */
               char **ttype,    /* O - name of each column                      */
               LONGLONG *tbcol, /* O - byte offset in row to each column        */
               char **tform,    /* O - value of TFORMn keyword for each column  */
               char **tunit,    /* O - value of TUNITn keyword for each column  */
               char *extnm,     /* O - value of EXTNAME keyword, if any         */
               int *status)     /* IO - error status                            */
    /*
      Get keywords from the Header of the ASCII TaBle:
      Check that the keywords conform to the FITS standard and return the
      parameters which describe the table.
    */
    {
        int ii, maxf, nfound, tstatus;
        long fields;
        char name[FLEN_KEYWORD], value[FLEN_VALUE], comm[FLEN_COMMENT];
        char xtension[FLEN_VALUE], message[81];
        LONGLONG llnaxis1, llnaxis2, pcount;
    
        if (*status > 0)
            return(*status);
    
        /* read the first keyword of the extension */
        ffgkyn(fptr, 1, name, value, comm, status);
    
        if (!strcmp(name, "XTENSION"))
        {
                if (ffc2s(value, xtension, status) > 0)  /* get the value string */
                {
                    ffpmsg("Bad value string for XTENSION keyword:");
                    ffpmsg(value);
                    return(*status);
                }
    
                /* allow the quoted string value to begin in any column and */
                /* allow any number of trailing blanks before the closing quote */
                if ( (value[0] != '\'')   ||  /* first char must be a quote */
                     ( strcmp(xtension, "TABLE") ) )
                {
                    sprintf(message,
                    "This is not a TABLE extension: %s", value);
                    ffpmsg(message);
                    return(*status = NOT_ATABLE);
                }
        }
    
        else  /* error: 1st keyword of extension != XTENSION */
        {
            sprintf(message,
            "First keyword of the extension is not XTENSION: %s", name);
            ffpmsg(message);
            return(*status = NO_XTENSION);
        }
    
        if (ffgttb(fptr, &llnaxis1, &llnaxis2, &pcount, &fields, status) > 0)
            return(*status);
    
        if (naxis1)
           *naxis1 = llnaxis1;
    
        if (naxis2)
           *naxis2 = llnaxis2;
    
        if (pcount != 0)
        {
           sprintf(message, "PCOUNT = %.0f is illegal in ASCII table; must = 0",
                 (double) pcount);
           ffpmsg(message);
           return(*status = BAD_PCOUNT);
        }
    
        if (tfields)
           *tfields = fields;
    
        if (maxfield < 0)
            maxf = fields;
        else
            maxf = minvalue(maxfield, fields);
    
        if (maxf > 0)
        {
            for (ii = 0; ii < maxf; ii++)
            {   /* initialize optional keyword values */
                if (ttype)
                    *ttype[ii] = '\0';   
    
                if (tunit)
                    *tunit[ii] = '\0';
            }
    
       
            if (ttype)
                ffgkns(fptr, "TTYPE", 1, maxf, ttype, &nfound, status);
    
            if (tunit)
                ffgkns(fptr, "TUNIT", 1, maxf, tunit, &nfound, status);
    
            if (*status > 0)
                return(*status);
    
            if (tbcol)
            {
                ffgknjj(fptr, "TBCOL", 1, maxf, tbcol, &nfound, status);
    
                if (*status > 0 || nfound != maxf)
                {
                    ffpmsg(
            "Required TBCOL keyword(s) not found in ASCII table header (ffghtbll).");
                    return(*status = NO_TBCOL);
                }
            }
    
            if (tform)
            {
                ffgkns(fptr, "TFORM", 1, maxf, tform, &nfound, status);
    
                if (*status > 0 || nfound != maxf)
                {
                    ffpmsg(
            "Required TFORM keyword(s) not found in ASCII table header (ffghtbll).");
                    return(*status = NO_TFORM);
                }
            }
        }
    
        if (extnm)
        {
            extnm[0] = '\0';
    
            tstatus = *status;
            ffgkys(fptr, "EXTNAME", extnm, comm, status);
    
            if (*status == KEY_NO_EXIST)
                *status = tstatus;  /* keyword not required, so ignore error */
        }
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffghbn(fitsfile *fptr,  /* I - FITS file pointer                        */
               int maxfield,    /* I - maximum no. of columns to read;          */
               long *naxis2,    /* O - number of rows in the table              */
               int *tfields,    /* O - number of columns in the table           */
               char **ttype,    /* O - name of each column                      */
               char **tform,    /* O - TFORMn value for each column             */
               char **tunit,    /* O - TUNITn value for each column             */
               char *extnm,     /* O - value of EXTNAME keyword, if any         */
               long *pcount,    /* O - value of PCOUNT keyword                  */
               int *status)     /* IO - error status                            */
    /*
      Get keywords from the Header of the BiNary table:
      Check that the keywords conform to the FITS standard and return the
      parameters which describe the table.
    */
    {
        int ii, maxf, nfound, tstatus;
        long  fields;
        char name[FLEN_KEYWORD], value[FLEN_VALUE], comm[FLEN_COMMENT];
        char xtension[FLEN_VALUE], message[81];
        LONGLONG naxis1ll, naxis2ll, pcountll;
    
        if (*status > 0)
            return(*status);
    
        /* read the first keyword of the extension */
        ffgkyn(fptr, 1, name, value, comm, status);
    
        if (!strcmp(name, "XTENSION"))
        {
                if (ffc2s(value, xtension, status) > 0)  /* get the value string */
                {
                    ffpmsg("Bad value string for XTENSION keyword:");
                    ffpmsg(value);
                    return(*status);
                }
    
                /* allow the quoted string value to begin in any column and */
                /* allow any number of trailing blanks before the closing quote */
                if ( (value[0] != '\'')   ||  /* first char must be a quote */
                     ( strcmp(xtension, "BINTABLE") &&
                       strcmp(xtension, "A3DTABLE") &&
                       strcmp(xtension, "3DTABLE")
                     ) )
                {
                    sprintf(message,
                    "This is not a BINTABLE extension: %s", value);
                    ffpmsg(message);
                    return(*status = NOT_BTABLE);
                }
        }
    
        else  /* error: 1st keyword of extension != XTENSION */
        {
            sprintf(message,
            "First keyword of the extension is not XTENSION: %s", name);
            ffpmsg(message);
            return(*status = NO_XTENSION);
        }
    
        if (ffgttb(fptr, &naxis1ll, &naxis2ll, &pcountll, &fields, status) > 0)
            return(*status);
    
        if (naxis2)
           *naxis2 = (long) naxis2ll;
    
        if (pcount)
           *pcount = (long) pcountll;
    
        if (tfields)
            *tfields = fields;
    
        if (maxfield < 0)
            maxf = fields;
        else
            maxf = minvalue(maxfield, fields);
    
        if (maxf > 0)
        {
            for (ii = 0; ii < maxf; ii++)
            {   /* initialize optional keyword values */
                if (ttype)
                    *ttype[ii] = '\0';   
    
                if (tunit)
                    *tunit[ii] = '\0';
            }
    
            if (ttype)
                ffgkns(fptr, "TTYPE", 1, maxf, ttype, &nfound, status);
    
            if (tunit)
                ffgkns(fptr, "TUNIT", 1, maxf, tunit, &nfound, status);
    
            if (*status > 0)
                return(*status);
    
            if (tform)
            {
                ffgkns(fptr, "TFORM", 1, maxf, tform, &nfound, status);
    
                if (*status > 0 || nfound != maxf)
                {
                    ffpmsg(
            "Required TFORM keyword(s) not found in binary table header (ffghbn).");
                    return(*status = NO_TFORM);
                }
            }
        }
    
        if (extnm)
        {
            extnm[0] = '\0';
    
            tstatus = *status;
            ffgkys(fptr, "EXTNAME", extnm, comm, status);
    
            if (*status == KEY_NO_EXIST)
              *status = tstatus;  /* keyword not required, so ignore error */
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffghbnll(fitsfile *fptr,  /* I - FITS file pointer                        */
               int maxfield,    /* I - maximum no. of columns to read;          */
               LONGLONG *naxis2,    /* O - number of rows in the table              */
               int *tfields,    /* O - number of columns in the table           */
               char **ttype,    /* O - name of each column                      */
               char **tform,    /* O - TFORMn value for each column             */
               char **tunit,    /* O - TUNITn value for each column             */
               char *extnm,     /* O - value of EXTNAME keyword, if any         */
               LONGLONG *pcount,    /* O - value of PCOUNT keyword                  */
               int *status)     /* IO - error status                            */
    /*
      Get keywords from the Header of the BiNary table:
      Check that the keywords conform to the FITS standard and return the
      parameters which describe the table.
    */
    {
        int ii, maxf, nfound, tstatus;
        long  fields;
        char name[FLEN_KEYWORD], value[FLEN_VALUE], comm[FLEN_COMMENT];
        char xtension[FLEN_VALUE], message[81];
        LONGLONG naxis1ll, naxis2ll, pcountll;
    
        if (*status > 0)
            return(*status);
    
        /* read the first keyword of the extension */
        ffgkyn(fptr, 1, name, value, comm, status);
    
        if (!strcmp(name, "XTENSION"))
        {
                if (ffc2s(value, xtension, status) > 0)  /* get the value string */
                {
                    ffpmsg("Bad value string for XTENSION keyword:");
                    ffpmsg(value);
                    return(*status);
                }
    
                /* allow the quoted string value to begin in any column and */
                /* allow any number of trailing blanks before the closing quote */
                if ( (value[0] != '\'')   ||  /* first char must be a quote */
                     ( strcmp(xtension, "BINTABLE") &&
                       strcmp(xtension, "A3DTABLE") &&
                       strcmp(xtension, "3DTABLE")
                     ) )
                {
                    sprintf(message,
                    "This is not a BINTABLE extension: %s", value);
                    ffpmsg(message);
                    return(*status = NOT_BTABLE);
                }
        }
    
        else  /* error: 1st keyword of extension != XTENSION */
        {
            sprintf(message,
            "First keyword of the extension is not XTENSION: %s", name);
            ffpmsg(message);
            return(*status = NO_XTENSION);
        }
    
        if (ffgttb(fptr, &naxis1ll, &naxis2ll, &pcountll, &fields, status) > 0)
            return(*status);
    
        if (naxis2)
           *naxis2 = naxis2ll;
    
        if (pcount)
           *pcount = pcountll;
    
        if (tfields)
            *tfields = fields;
    
        if (maxfield < 0)
            maxf = fields;
        else
            maxf = minvalue(maxfield, fields);
    
        if (maxf > 0)
        {
            for (ii = 0; ii < maxf; ii++)
            {   /* initialize optional keyword values */
                if (ttype)
                    *ttype[ii] = '\0';   
    
                if (tunit)
                    *tunit[ii] = '\0';
            }
    
            if (ttype)
                ffgkns(fptr, "TTYPE", 1, maxf, ttype, &nfound, status);
    
            if (tunit)
                ffgkns(fptr, "TUNIT", 1, maxf, tunit, &nfound, status);
    
            if (*status > 0)
                return(*status);
    
            if (tform)
            {
                ffgkns(fptr, "TFORM", 1, maxf, tform, &nfound, status);
    
                if (*status > 0 || nfound != maxf)
                {
                    ffpmsg(
            "Required TFORM keyword(s) not found in binary table header (ffghbn).");
                    return(*status = NO_TFORM);
                }
            }
        }
    
        if (extnm)
        {
            extnm[0] = '\0';
    
            tstatus = *status;
            ffgkys(fptr, "EXTNAME", extnm, comm, status);
    
            if (*status == KEY_NO_EXIST)
              *status = tstatus;  /* keyword not required, so ignore error */
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgphd(fitsfile *fptr,  /* I - FITS file pointer                        */
               int maxdim,      /* I - maximum no. of dimensions to read;       */
               int *simple,     /* O - does file conform to FITS standard? 1/0  */
               int *bitpix,     /* O - number of bits per data value pixel      */
               int *naxis,      /* O - number of axes in the data array         */
               LONGLONG naxes[],    /* O - length of each data axis                 */
               long *pcount,    /* O - number of group parameters (usually 0)   */
               long *gcount,    /* O - number of random groups (usually 1 or 0) */
               int *extend,     /* O - may FITS file haave extensions?          */
               double *bscale,  /* O - array pixel linear scaling factor        */
               double *bzero,   /* O - array pixel linear scaling zero point    */
               LONGLONG *blank, /* O - value used to represent undefined pixels */
               int *nspace,     /* O - number of blank keywords prior to END    */
               int *status)     /* IO - error status                            */
    {
    /*
      Get the Primary HeaDer parameters.  Check that the keywords conform to
      the FITS standard and return the parameters which determine the size and
      structure of the primary array or IMAGE extension.
    */
        int unknown, found_end, tstatus, ii, nextkey, namelen;
        long longbitpix, longnaxis;
        LONGLONG axislen;
        char message[FLEN_ERRMSG], keyword[FLEN_KEYWORD];
        char card[FLEN_CARD];
        char name[FLEN_KEYWORD], value[FLEN_VALUE], comm[FLEN_COMMENT];
        char xtension[FLEN_VALUE];
    
        if (*status > 0)
            return(*status);
    
        if (fptr->HDUposition != (fptr->Fptr)->curhdu)
            ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status);
    
        if (simple)
           *simple = 1;
    
        unknown = 0;
    
        /*--------------------------------------------------------------------*/
        /*  Get 1st keyword of HDU and test whether it is SIMPLE or XTENSION  */
        /*--------------------------------------------------------------------*/
        ffgkyn(fptr, 1, name, value, comm, status);
    
        if ((fptr->Fptr)->curhdu == 0) /* Is this the beginning of the FITS file? */
        {
            if (!strcmp(name, "SIMPLE"))
            {
                if (value[0] == 'F')
                {
                    if (simple)
                        *simple=0;          /* not a simple FITS file */
                }
                else if (value[0] != 'T')
                    return(*status = BAD_SIMPLE);
            }
    
            else
            {
                sprintf(message,
                       "First keyword of the file is not SIMPLE: %s", name);
                ffpmsg(message);
                return(*status = NO_SIMPLE);
            }
        }
    
        else    /* not beginning of the file, so presumably an IMAGE extension */
        {       /* or it could be a compressed image in a binary table */
    
            if (!strcmp(name, "XTENSION"))
            {
                if (ffc2s(value, xtension, status) > 0)  /* get the value string */
                {
                    ffpmsg("Bad value string for XTENSION keyword:");
                    ffpmsg(value);
                    return(*status);
                }
    
                /* allow the quoted string value to begin in any column and */
                /* allow any number of trailing blanks before the closing quote */
                if ( (value[0] != '\'')   ||  /* first char must be a quote */
                      ( strcmp(xtension, "IMAGE")  &&
                        strcmp(xtension, "IUEIMAGE") ) )
                {
                    unknown = 1;  /* unknown type of extension; press on anyway */
                    sprintf(message,
                       "This is not an IMAGE extension: %s", value);
                    ffpmsg(message);
                }
            }
    
            else  /* error: 1st keyword of extension != XTENSION */
            {
                sprintf(message,
                "First keyword of the extension is not XTENSION: %s", name);
                ffpmsg(message);
                return(*status = NO_XTENSION);
            }
        }
    
        if (unknown && (fptr->Fptr)->compressimg)
        {
            /* this is a compressed image, so read ZBITPIX, ZNAXIS keywords */
            unknown = 0;  /* reset flag */
            ffxmsg(3, message); /* clear previous spurious error message */
    
            if (bitpix)
            {
                ffgidt(fptr, bitpix, status); /* get bitpix value */
    
                if (*status > 0)
                {
                    ffpmsg("Error reading BITPIX value of compressed image");
                    return(*status);
                }
            }
    
            if (naxis)
            {
                ffgidm(fptr, naxis, status); /* get NAXIS value */
    
                if (*status > 0)
                {
                    ffpmsg("Error reading NAXIS value of compressed image");
                    return(*status);
                }
            }
    
            if (naxes)
            {
                ffgiszll(fptr, maxdim, naxes, status);  /* get NAXISn value */
    
                if (*status > 0)
                {
                    ffpmsg("Error reading NAXISn values of compressed image");
                    return(*status);
                }
            }
    
            nextkey = 9; /* skip required table keywords in the following search */
        }
        else
        {
    
            /*----------------------------------------------------------------*/
            /*  Get 2nd keyword;  test whether it is BITPIX with legal value  */
            /*----------------------------------------------------------------*/
            ffgkyn(fptr, 2, name, value, comm, status);  /* BITPIX = 2nd keyword */
    
            if (strcmp(name, "BITPIX"))
            {
                sprintf(message,
                "Second keyword of the extension is not BITPIX: %s", name);
                ffpmsg(message);
                return(*status = NO_BITPIX);
            }
    
            if (ffc2ii(value,  &longbitpix, status) > 0)
            {
                sprintf(message,
                "Value of BITPIX keyword is not an integer: %s", value);
                ffpmsg(message);
                return(*status = BAD_BITPIX);
            }
            else if (longbitpix != BYTE_IMG && longbitpix != SHORT_IMG &&
                 longbitpix != LONG_IMG && longbitpix != LONGLONG_IMG &&
                 longbitpix != FLOAT_IMG && longbitpix != DOUBLE_IMG)
            {
                sprintf(message,
                "Illegal value for BITPIX keyword: %s", value);
                ffpmsg(message);
                return(*status = BAD_BITPIX);
            }
            if (bitpix)
                *bitpix = longbitpix;  /* do explicit type conversion */
    
            /*---------------------------------------------------------------*/
            /*  Get 3rd keyword;  test whether it is NAXIS with legal value  */
            /*---------------------------------------------------------------*/
            ffgtkn(fptr, 3, "NAXIS",  &longnaxis, status);
    
            if (*status == BAD_ORDER)
                return(*status = NO_NAXIS);
            else if (*status == NOT_POS_INT || longnaxis > 999)
            {
                sprintf(message,"NAXIS = %ld is illegal", longnaxis);
                ffpmsg(message);
                return(*status = BAD_NAXIS);
            }
            else
                if (naxis)
                     *naxis = longnaxis;  /* do explicit type conversion */
    
            /*---------------------------------------------------------*/
            /*  Get the next NAXISn keywords and test for legal values */
            /*---------------------------------------------------------*/
            for (ii=0, nextkey=4; ii < longnaxis; ii++, nextkey++)
            {
                ffkeyn("NAXIS", ii+1, keyword, status);
                ffgtknjj(fptr, 4+ii, keyword, &axislen, status);
    
                if (*status == BAD_ORDER)
                    return(*status = NO_NAXES);
                else if (*status == NOT_POS_INT)
                    return(*status = BAD_NAXES);
                else if (ii < maxdim)
                    if (naxes)
                        naxes[ii] = axislen;
            }
        }
    
        /*---------------------------------------------------------*/
        /*  now look for other keywords of interest:               */
        /*  BSCALE, BZERO, BLANK, PCOUNT, GCOUNT, EXTEND, and END  */
        /*---------------------------------------------------------*/
    
        /*  initialize default values in case keyword is not present */
        if (bscale)
            *bscale = 1.0;
        if (bzero)
            *bzero  = 0.0;
        if (pcount)
            *pcount = 0;
        if (gcount)
            *gcount = 1;
        if (extend)
            *extend = 0;
        if (blank)
          *blank = NULL_UNDEFINED; /* no default null value for BITPIX=8,16,32 */
    
        *nspace = 0;
        found_end = 0;
        tstatus = *status;
    
        for (; !found_end; nextkey++)  
        {
          /* get next keyword */
          /* don't use ffgkyn here because it trys to parse the card to read */
          /* the value string, thus failing to read the file just because of */
          /* minor syntax errors in optional keywords.                       */
    
          if (ffgrec(fptr, nextkey, card, status) > 0 )  /* get the 80-byte card */
          {
            if (*status == KEY_OUT_BOUNDS)
            {
              found_end = 1;  /* simply hit the end of the header */
              *status = tstatus;  /* reset error status */
            }
            else          
            {
              ffpmsg("Failed to find the END keyword in header (ffgphd).");
            }
          }
          else /* got the next keyword without error */
          {
            ffgknm(card, name, &namelen, status); /* get the keyword name */
    
            if (fftrec(name, status) > 0)  /* test keyword name; catches no END */
            {
              sprintf(message,
                  "Name of keyword no. %d contains illegal character(s): %s",
                  nextkey, name);
              ffpmsg(message);
    
              if (nextkey % 36 == 0) /* test if at beginning of 36-card record */
                ffpmsg("  (This may indicate a missing END keyword).");
            }
    
            if (!strcmp(name, "BSCALE") && bscale)
            {
                *nspace = 0;  /* reset count of blank keywords */
                ffpsvc(card, value, comm, status); /* parse value and comment */
    
                if (ffc2dd(value, bscale, status) > 0) /* convert to double */
                {
                    /* reset error status and continue, but still issue warning */
                    *status = tstatus;
                    *bscale = 1.0;
    
                    sprintf(message,
                    "Error reading BSCALE keyword value as a double: %s", value);
                    ffpmsg(message);
                }
            }
    
            else if (!strcmp(name, "BZERO") && bzero)
            {
                *nspace = 0;  /* reset count of blank keywords */
                ffpsvc(card, value, comm, status); /* parse value and comment */
    
                if (ffc2dd(value, bzero, status) > 0) /* convert to double */
                {
                    /* reset error status and continue, but still issue warning */
                    *status = tstatus;
                    *bzero = 0.0;
    
                    sprintf(message,
                    "Error reading BZERO keyword value as a double: %s", value);
                    ffpmsg(message);
                }
            }
    
            else if (!strcmp(name, "BLANK") && blank)
            {
                *nspace = 0;  /* reset count of blank keywords */
                ffpsvc(card, value, comm, status); /* parse value and comment */
    
                if (ffc2jj(value, blank, status) > 0) /* convert to LONGLONG */
                {
                    /* reset error status and continue, but still issue warning */
                    *status = tstatus;
                    *blank = NULL_UNDEFINED;
    
                    sprintf(message,
                    "Error reading BLANK keyword value as an integer: %s", value);
                    ffpmsg(message);
                }
            }
    
            else if (!strcmp(name, "PCOUNT") && pcount)
            {
                *nspace = 0;  /* reset count of blank keywords */
                ffpsvc(card, value, comm, status); /* parse value and comment */
    
                if (ffc2ii(value, pcount, status) > 0) /* convert to long */
                {
                    sprintf(message,
                    "Error reading PCOUNT keyword value as an integer: %s", value);
                    ffpmsg(message);
                }
            }
    
            else if (!strcmp(name, "GCOUNT") && gcount)
            {
                *nspace = 0;  /* reset count of blank keywords */
                ffpsvc(card, value, comm, status); /* parse value and comment */
    
                if (ffc2ii(value, gcount, status) > 0) /* convert to long */
                {
                    sprintf(message,
                    "Error reading GCOUNT keyword value as an integer: %s", value);
                    ffpmsg(message);
                }
            }
    
            else if (!strcmp(name, "EXTEND") && extend)
            {
                *nspace = 0;  /* reset count of blank keywords */
                ffpsvc(card, value, comm, status); /* parse value and comment */
    
                if (ffc2ll(value, extend, status) > 0) /* convert to logical */
                {
                    /* reset error status and continue, but still issue warning */
                    *status = tstatus;
                    *extend = 0;
    
                    sprintf(message,
                    "Error reading EXTEND keyword value as a logical: %s", value);
                    ffpmsg(message);
                }
            }
    
            else if (!strcmp(name, "END"))
                found_end = 1;
    
            else if (!card[0] )
                *nspace = *nspace + 1;  /* this is a blank card in the header */
    
            else
                *nspace = 0;  /* reset count of blank keywords immediately
                                before the END keyword to zero   */
          }
    
          if (*status > 0)  /* exit on error after writing error message */
          {
            if ((fptr->Fptr)->curhdu == 0)
                ffpmsg(
                "Failed to read the required primary array header keywords.");
            else
                ffpmsg(
                "Failed to read the required image extension header keywords.");
    
            return(*status);
          }
        }
    
        if (unknown)
           *status = NOT_IMAGE;
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgttb(fitsfile *fptr,      /* I - FITS file pointer*/
               LONGLONG *rowlen,        /* O - length of a table row, in bytes */
               LONGLONG *nrows,         /* O - number of rows in the table */
               LONGLONG *pcount,    /* O - value of PCOUNT keyword */
               long *tfields,       /* O - number of fields in the table */
               int *status)         /* IO - error status    */
    {
    /*
      Get and Test TaBle;
      Test that this is a legal ASCII or binary table and get some keyword values.
      We assume that the calling routine has already tested the 1st keyword
      of the extension to ensure that this is really a table extension.
    */
        if (*status > 0)
            return(*status);
    
        if (fftkyn(fptr, 2, "BITPIX", "8", status) == BAD_ORDER) /* 2nd keyword */
            return(*status = NO_BITPIX);  /* keyword not BITPIX */
        else if (*status == NOT_POS_INT)
            return(*status = BAD_BITPIX); /* value != 8 */
    
        if (fftkyn(fptr, 3, "NAXIS", "2", status) == BAD_ORDER) /* 3rd keyword */
            return(*status = NO_NAXIS);  /* keyword not NAXIS */
        else if (*status == NOT_POS_INT)
            return(*status = BAD_NAXIS); /* value != 2 */
    
        if (ffgtknjj(fptr, 4, "NAXIS1", rowlen, status) == BAD_ORDER) /* 4th key */
            return(*status = NO_NAXES);  /* keyword not NAXIS1 */
        else if (*status == NOT_POS_INT)
            return(*status == BAD_NAXES); /* bad NAXIS1 value */
    
        if (ffgtknjj(fptr, 5, "NAXIS2", nrows, status) == BAD_ORDER) /* 5th key */
            return(*status = NO_NAXES);  /* keyword not NAXIS2 */
        else if (*status == NOT_POS_INT)
            return(*status == BAD_NAXES); /* bad NAXIS2 value */
    
        if (ffgtknjj(fptr, 6, "PCOUNT", pcount, status) == BAD_ORDER) /* 6th key */
            return(*status = NO_PCOUNT);  /* keyword not PCOUNT */
        else if (*status == NOT_POS_INT)
            return(*status = BAD_PCOUNT); /* bad PCOUNT value */
    
        if (fftkyn(fptr, 7, "GCOUNT", "1", status) == BAD_ORDER) /* 7th keyword */
            return(*status = NO_GCOUNT);  /* keyword not GCOUNT */
        else if (*status == NOT_POS_INT)
            return(*status = BAD_GCOUNT); /* value != 1 */
    
        if (ffgtkn(fptr, 8, "TFIELDS", tfields, status) == BAD_ORDER) /* 8th key*/
            return(*status = NO_TFIELDS);  /* keyword not TFIELDS */
        else if (*status == NOT_POS_INT || *tfields > 999)
            return(*status == BAD_TFIELDS); /* bad TFIELDS value */
    
    
        if (*status > 0)
           ffpmsg(
           "Error reading required keywords in the table header (FTGTTB).");
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgtkn(fitsfile *fptr,  /* I - FITS file pointer              */
               int numkey,      /* I - number of the keyword to read  */
               char *name,      /* I - expected name of the keyword   */
               long *value,     /* O - integer value of the keyword   */
               int *status)     /* IO - error status                  */
    {
    /*
      test that keyword number NUMKEY has the expected name and get the
      integer value of the keyword.  Return an error if the keyword
      name does not match the input name, or if the value of the
      keyword is not a positive integer.
    */
        char keyname[FLEN_KEYWORD], valuestring[FLEN_VALUE];
        char comm[FLEN_COMMENT], message[FLEN_ERRMSG];
       
        if (*status > 0)
            return(*status);
        
        keyname[0] = '\0';
        valuestring[0] = '\0';
    
        if (ffgkyn(fptr, numkey, keyname, valuestring, comm, status) <= 0)
        {
            if (strcmp(keyname, name) )
                *status = BAD_ORDER;  /* incorrect keyword name */
    
            else
            {
                ffc2ii(valuestring, value, status);  /* convert to integer */
    
                if (*status > 0 || *value < 0 )
                   *status = NOT_POS_INT;
            }
    
            if (*status > 0)
            {
                sprintf(message,
                  "ffgtkn found unexpected keyword or value for keyword no. %d.",
                  numkey);
                ffpmsg(message);
    
                sprintf(message,
                  " Expected positive integer keyword %s, but instead", name);
                ffpmsg(message);
    
                sprintf(message,
                  " found keyword %s with value %s", keyname, valuestring);
                ffpmsg(message);
            }
        }
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgtknjj(fitsfile *fptr,  /* I - FITS file pointer              */
               int numkey,      /* I - number of the keyword to read  */
               char *name,      /* I - expected name of the keyword   */
               LONGLONG *value, /* O - integer value of the keyword   */
               int *status)     /* IO - error status                  */
    {
    /*
      test that keyword number NUMKEY has the expected name and get the
      integer value of the keyword.  Return an error if the keyword
      name does not match the input name, or if the value of the
      keyword is not a positive integer.
    */
        char keyname[FLEN_KEYWORD], valuestring[FLEN_VALUE];
        char comm[FLEN_COMMENT], message[FLEN_ERRMSG];
       
        if (*status > 0)
            return(*status);
        
        keyname[0] = '\0';
        valuestring[0] = '\0';
    
        if (ffgkyn(fptr, numkey, keyname, valuestring, comm, status) <= 0)
        {
            if (strcmp(keyname, name) )
                *status = BAD_ORDER;  /* incorrect keyword name */
    
            else
            {
                ffc2jj(valuestring, value, status);  /* convert to integer */
    
                if (*status > 0 || *value < 0 )
                   *status = NOT_POS_INT;
            }
    
            if (*status > 0)
            {
                sprintf(message,
                  "ffgtknjj found unexpected keyword or value for keyword no. %d.",
                  numkey);
                ffpmsg(message);
    
                sprintf(message,
                  " Expected positive integer keyword %s, but instead", name);
                ffpmsg(message);
    
                sprintf(message,
                  " found keyword %s with value %s", keyname, valuestring);
                ffpmsg(message);
            }
        }
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int fftkyn(fitsfile *fptr,  /* I - FITS file pointer              */
               int numkey,      /* I - number of the keyword to read  */
               char *name,      /* I - expected name of the keyword   */
               char *value,     /* I - expected value of the keyword  */
               int *status)     /* IO - error status                  */
    {
    /*
      test that keyword number NUMKEY has the expected name and the
      expected value string.
    */
        char keyname[FLEN_KEYWORD], valuestring[FLEN_VALUE];
        char comm[FLEN_COMMENT], message[FLEN_ERRMSG];
       
        if (*status > 0)
            return(*status);
        
        keyname[0] = '\0';
        valuestring[0] = '\0';
    
        if (ffgkyn(fptr, numkey, keyname, valuestring, comm, status) <= 0)
        {
            if (strcmp(keyname, name) )
                *status = BAD_ORDER;  /* incorrect keyword name */
    
            if (strcmp(value, valuestring) )
                *status = NOT_POS_INT;  /* incorrect keyword value */
        }
    
        if (*status > 0)
        {
            sprintf(message,
              "fftkyn found unexpected keyword or value for keyword no. %d.",
              numkey);
            ffpmsg(message);
    
            sprintf(message,
              " Expected keyword %s with value %s, but", name, value);
            ffpmsg(message);
    
            sprintf(message,
              " found keyword %s with value %s", keyname, valuestring);
            ffpmsg(message);
        }
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffh2st(fitsfile *fptr,   /* I - FITS file pointer           */
               char **header,    /* O - returned header string      */
               int  *status)     /* IO - error status               */
    
    /*
      read header keywords into a long string of chars.  This routine allocates
      memory for the string, so the calling routine must eventually free the
      memory when it is not needed any more.
    */
    {
        int nkeys;
        long nrec;
        LONGLONG headstart;
    
        if (*status > 0)
            return(*status);
    
        /* get number of keywords in the header (doesn't include END) */
        if (ffghsp(fptr, &nkeys, NULL, status) > 0)
            return(*status);
    
        nrec = (nkeys / 36 + 1);
    
        /* allocate memory for all the keywords (multiple of 2880 bytes) */
        *header = (char *) calloc ( nrec * 2880 + 1, 1);
        if (!(*header))
        {
             *status = MEMORY_ALLOCATION;
             ffpmsg("failed to allocate memory to hold all the header keywords");
             return(*status);
        }
    
        ffghadll(fptr, &headstart, NULL, NULL, status); /* get header address */
        ffmbyt(fptr, headstart, REPORT_EOF, status);   /* move to header */
        ffgbyt(fptr, nrec * 2880, *header, status);     /* copy header */
        *(*header + (nrec * 2880)) = '\0';
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffhdr2str( fitsfile *fptr,  /* I - FITS file pointer                    */
                int exclude_comm,   /* I - if TRUE, exclude commentary keywords */
                char **exclist,     /* I - list of excluded keyword names       */
                int nexc,           /* I - number of names in exclist           */
                char **header,      /* O - returned header string               */
                int *nkeys,         /* O - returned number of 80-char keywords  */
                int  *status)       /* IO - error status                        */
    /*
      read header keywords into a long string of chars.  This routine allocates
      memory for the string, so the calling routine must eventually free the
      memory when it is not needed any more.  If exclude_comm is TRUE, then all 
      the COMMENT, HISTORY, and  keywords will be excluded from the output
      string of keywords.  Any other list of keywords to be excluded may be
      specified with the exclist parameter.
    */
    {
        int casesn, match, exact, totkeys;
        long ii, jj;
        char keybuf[162], keyname[FLEN_KEYWORD], *headptr;
    
        *nkeys = 0;
    
        if (*status > 0)
            return(*status);
    
        /* get number of keywords in the header (doesn't include END) */
        if (ffghsp(fptr, &totkeys, NULL, status) > 0)
            return(*status);
    
        /* allocate memory for all the keywords */
        /* (will reallocate it later to minimize the memory size) */
        
        *header = (char *) calloc ( (totkeys + 1) * 80 + 1, 1);
        if (!(*header))
        {
             *status = MEMORY_ALLOCATION;
             ffpmsg("failed to allocate memory to hold all the header keywords");
             return(*status);
        }
    
        headptr = *header;
        casesn = FALSE;
    
        /* read every keyword */
        for (ii = 1; ii <= totkeys; ii++) 
        {
            ffgrec(fptr, ii, keybuf, status);
            /* pad record with blanks so that it is at least 80 chars long */
            strcat(keybuf,
        "                                                                                ");
    
            keyname[0] = '\0';
            strncat(keyname, keybuf, 8); /* copy the keyword name */
            
            if (exclude_comm)
            {
                if (!FSTRCMP("COMMENT ", keyname) ||
                    !FSTRCMP("HISTORY ", keyname) ||
                    !FSTRCMP("        ", keyname) )
                  continue;  /* skip this commentary keyword */
            }
    
            /* does keyword match any names in the exclusion list? */
            for (jj = 0; jj < nexc; jj++ )
            {
                ffcmps(exclist[jj], keyname, casesn, &match, &exact);
                     if (match)
                         break;
            }
    
            if (jj == nexc)
            {
                /* not in exclusion list, add this keyword to the string */
                strcpy(headptr, keybuf);
                headptr += 80;
                (*nkeys)++;
            }
        }
    
        /* add the END keyword */
        strcpy(headptr,
        "END                                                                             ");
        headptr += 80;
        (*nkeys)++;
    
        *headptr = '\0';   /* terminate the header string */
        /* minimize the allocated memory */
        *header = (char *) realloc(*header, (*nkeys *80) + 1);  
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffcnvthdr2str( fitsfile *fptr,  /* I - FITS file pointer                    */
                int exclude_comm,   /* I - if TRUE, exclude commentary keywords */
                char **exclist,     /* I - list of excluded keyword names       */
                int nexc,           /* I - number of names in exclist           */
                char **header,      /* O - returned header string               */
                int *nkeys,         /* O - returned number of 80-char keywords  */
                int  *status)       /* IO - error status                        */
    /*
      Same as ffhdr2str, except that if the input HDU is a tile compressed image
      (stored in a binary table) then it will first convert that header back
      to that of a normal uncompressed FITS image before concatenating the header
      keyword records.
    */
    {
        fitsfile *tempfptr;
        
        if (*status > 0)
            return(*status);
    
        if (fits_is_compressed_image(fptr, status) )
        {
            /* this is a tile compressed image, so need to make an uncompressed */
    	/* copy of the image header in memory before concatenating the keywords */
            if (fits_create_file(&tempfptr, "mem://", status) > 0) {
    	    return(*status);
    	}
    
    	if (fits_img_decompress_header(fptr, tempfptr, status) > 0) {
    	    fits_delete_file(tempfptr, status);
    	    return(*status);
    	}
    
    	ffhdr2str(tempfptr, exclude_comm, exclist, nexc, header, nkeys, status);
    	fits_close_file(tempfptr, status);
    
        } else {
            ffhdr2str(fptr, exclude_comm, exclist, nexc, header, nkeys, status);
        }
    
        return(*status);
    }
    healpy-1.8.1/cfitsio/edithdu.c0000654000175000017530000007472712272000775016670 0ustar  zoncaplanck00000000000000/*  This file, edithdu.c, contains the FITSIO routines related to       */
    /*  copying, inserting, or deleting HDUs in a FITS file                 */
    
    /*  The FITSIO software was written by William Pence at the High Energy    */
    /*  Astrophysic Science Archive Research Center (HEASARC) at the NASA      */
    /*  Goddard Space Flight Center.                                           */
    
    #include 
    #include 
    #include "fitsio2.h"
    /*--------------------------------------------------------------------------*/
    int ffcopy(fitsfile *infptr,    /* I - FITS file pointer to input file  */
               fitsfile *outfptr,   /* I - FITS file pointer to output file */
               int morekeys,        /* I - reserve space in output header   */
               int *status)         /* IO - error status     */
    /*
      copy the CHDU from infptr to the CHDU of outfptr.
      This will also allocate space in the output header for MOREKY keywords
    */
    {
        int nspace;
        
        if (*status > 0)
            return(*status);
    
        if (infptr == outfptr)
            return(*status = SAME_FILE);
    
        if (ffcphd(infptr, outfptr, status) )  /* copy the header keywords */
           return(*status);
    
        if (morekeys > 0) {
          ffhdef(outfptr, morekeys, status); /* reserve space for more keywords */
    
        } else {
            if (ffghsp(infptr, NULL, &nspace, status) > 0) /* get existing space */
                return(*status);
    
            if (nspace > 0) {
                ffhdef(outfptr, nspace, status); /* preserve same amount of space */
                if (nspace >= 35) {  
    
    	        /* There is at least 1 full empty FITS block in the header. */
    	        /* Physically write the END keyword at the beginning of the */
    	        /* last block to preserve this extra space now rather than */
    		/* later.  This is needed by the stream: driver which cannot */
    		/* seek back to the header to write the END keyword later. */
    
    	        ffwend(outfptr, status);
                }
            }
        }
    
        ffcpdt(infptr, outfptr, status);  /* now copy the data unit */
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffcpfl(fitsfile *infptr,    /* I - FITS file pointer to input file  */
               fitsfile *outfptr,   /* I - FITS file pointer to output file */
               int previous,        /* I - copy any previous HDUs?   */
               int current,         /* I - copy the current HDU?     */
               int following,       /* I - copy any following HDUs?   */
               int *status)         /* IO - error status     */
    /*
      copy all or part of the input file to the output file.
    */
    {
        int hdunum, ii;
    
        if (*status > 0)
            return(*status);
    
        if (infptr == outfptr)
            return(*status = SAME_FILE);
    
        ffghdn(infptr, &hdunum);
    
        if (previous) {   /* copy any previous HDUs */
            for (ii=1; ii < hdunum; ii++) {
                ffmahd(infptr, ii, NULL, status);
                ffcopy(infptr, outfptr, 0, status);
            }
        }
    
        if (current && (*status <= 0) ) {  /* copy current HDU */
            ffmahd(infptr, hdunum, NULL, status);
            ffcopy(infptr, outfptr, 0, status);
        }
    
        if (following && (*status <= 0) ) { /* copy any remaining HDUs */
            ii = hdunum + 1;
            while (1)
            { 
                if (ffmahd(infptr, ii, NULL, status) ) {
                     /* reset expected end of file status */
                     if (*status == END_OF_FILE)
                        *status = 0;
                     break;
                }
    
                if (ffcopy(infptr, outfptr, 0, status))
                     break;  /* quit on unexpected error */
    
                ii++;
            }
        }
    
        ffmahd(infptr, hdunum, NULL, status);  /* restore initial position */
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffcphd(fitsfile *infptr,    /* I - FITS file pointer to input file  */
               fitsfile *outfptr,   /* I - FITS file pointer to output file */
               int *status)         /* IO - error status     */
    /*
      copy the header keywords from infptr to outfptr.
    */
    {
        int nkeys, ii, inPrim = 0, outPrim = 0;
        long naxis, naxes[1];
        char *card, comm[FLEN_COMMENT];
        char *tmpbuff;
    
        if (*status > 0)
            return(*status);
    
        if (infptr == outfptr)
            return(*status = SAME_FILE);
    
        /* set the input pointer to the correct HDU */
        if (infptr->HDUposition != (infptr->Fptr)->curhdu)
            ffmahd(infptr, (infptr->HDUposition) + 1, NULL, status);
    
        if (ffghsp(infptr, &nkeys, NULL, status) > 0) /* get no. of keywords */
            return(*status);
    
        /* create a memory buffer to hold the header records */
        tmpbuff = (char*) malloc(nkeys*FLEN_CARD*sizeof(char));
        if (!tmpbuff)
            return(*status = MEMORY_ALLOCATION);
    
        /* read all of the header records in the input HDU */
        for (ii = 0; ii < nkeys; ii++)
          ffgrec(infptr, ii+1, tmpbuff + (ii * FLEN_CARD), status);
    
        if (infptr->HDUposition == 0)  /* set flag if this is the Primary HDU */
           inPrim = 1;
    
        /* if input is an image hdu, get the number of axes */
        naxis = -1;   /* negative if HDU is a table */
        if ((infptr->Fptr)->hdutype == IMAGE_HDU)
            ffgkyj(infptr, "NAXIS", &naxis, NULL, status);
    
        /* set the output pointer to the correct HDU */
        if (outfptr->HDUposition != (outfptr->Fptr)->curhdu)
            ffmahd(outfptr, (outfptr->HDUposition) + 1, NULL, status);
    
        /* check if output header is empty; if not create new empty HDU */
        if ((outfptr->Fptr)->headend !=
            (outfptr->Fptr)->headstart[(outfptr->Fptr)->curhdu] )
               ffcrhd(outfptr, status);   
    
        if (outfptr->HDUposition == 0)
        {
            if (naxis < 0)
            {
                /* the input HDU is a table, so we have to create */
                /* a dummy Primary array before copying it to the output */
                ffcrim(outfptr, 8, 0, naxes, status);
                ffcrhd(outfptr, status); /* create new empty HDU */
            }
            else
            {
                /* set flag that this is the Primary HDU */
                outPrim = 1;
            }
        }
    
        if (*status > 0)  /* check for errors before proceeding */
        {
            free(tmpbuff);
            return(*status);
        }
        if ( inPrim == 1 && outPrim == 0 )
        {
            /* copying from primary array to image extension */
            strcpy(comm, "IMAGE extension");
            ffpkys(outfptr, "XTENSION", "IMAGE", comm, status);
    
            /* copy BITPIX through NAXISn keywords */
            for (ii = 1; ii < 3 + naxis; ii++)
            {
                card = tmpbuff + (ii * FLEN_CARD);
                ffprec(outfptr, card, status);
            }
    
            strcpy(comm, "number of random group parameters");
            ffpkyj(outfptr, "PCOUNT", 0, comm, status);
      
            strcpy(comm, "number of random groups");
            ffpkyj(outfptr, "GCOUNT", 1, comm, status);
    
    
            /* copy remaining keywords, excluding EXTEND, and reference COMMENT keywords */
            for (ii = 3 + naxis ; ii < nkeys; ii++)
            {
                card = tmpbuff+(ii * FLEN_CARD);
                if (FSTRNCMP(card, "EXTEND  ", 8) &&
                    FSTRNCMP(card, "COMMENT   FITS (Flexible Image Transport System) format is", 58) && 
                    FSTRNCMP(card, "COMMENT   and Astrophysics', volume 376, page 3", 47) )
                {
                     ffprec(outfptr, card, status);
                }
            }
        }
        else if ( inPrim == 0 && outPrim == 1 )
        {
            /* copying between image extension and primary array */
            strcpy(comm, "file does conform to FITS standard");
            ffpkyl(outfptr, "SIMPLE", TRUE, comm, status);
    
            /* copy BITPIX through NAXISn keywords */
            for (ii = 1; ii < 3 + naxis; ii++)
            {
                card = tmpbuff + (ii * FLEN_CARD);
                ffprec(outfptr, card, status);
            }
    
            /* add the EXTEND keyword */
            strcpy(comm, "FITS dataset may contain extensions");
            ffpkyl(outfptr, "EXTEND", TRUE, comm, status);
    
          /* write standard block of self-documentating comments */
          ffprec(outfptr,
          "COMMENT   FITS (Flexible Image Transport System) format is defined in 'Astronomy",
          status);
          ffprec(outfptr,
          "COMMENT   and Astrophysics', volume 376, page 359; bibcode: 2001A&A...376..359H",
          status);
    
            /* copy remaining keywords, excluding pcount, gcount */
            for (ii = 3 + naxis; ii < nkeys; ii++)
            {
                card = tmpbuff+(ii * FLEN_CARD);
                if (FSTRNCMP(card, "PCOUNT  ", 8) && FSTRNCMP(card, "GCOUNT  ", 8))
                {
                     ffprec(outfptr, card, status);
                }
            }
        }
        else
        {
            /* input and output HDUs are same type; simply copy all keywords */
            for (ii = 0; ii < nkeys; ii++)
            {
                card = tmpbuff+(ii * FLEN_CARD);
                ffprec(outfptr, card, status);
            }
        }
    
        free(tmpbuff);
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffcpdt(fitsfile *infptr,    /* I - FITS file pointer to input file  */
               fitsfile *outfptr,   /* I - FITS file pointer to output file */
               int *status)         /* IO - error status     */
    {
    /*
      copy the data unit from the CHDU of infptr to the CHDU of outfptr. 
      This will overwrite any data already in the outfptr CHDU.
    */
        long nb, ii;
        LONGLONG indatastart, indataend, outdatastart;
        char buffer[2880];
    
        if (*status > 0)
            return(*status);
    
        if (infptr == outfptr)
            return(*status = SAME_FILE);
    
        ffghadll(infptr,  NULL, &indatastart, &indataend, status);
        ffghadll(outfptr, NULL, &outdatastart, NULL, status);
    
        /* Calculate the number of blocks to be copied  */
        nb = (long) ((indataend - indatastart) / 2880);
    
        if (nb > 0)
        {
          if (infptr->Fptr == outfptr->Fptr)
          {
            /* copying between 2 HDUs in the SAME file */
            for (ii = 0; ii < nb; ii++)
            {
                ffmbyt(infptr,  indatastart,  REPORT_EOF, status);
                ffgbyt(infptr,  2880L, buffer, status); /* read input block */
    
                ffmbyt(outfptr, outdatastart, IGNORE_EOF, status);
                ffpbyt(outfptr, 2880L, buffer, status); /* write output block */
    
                indatastart  += 2880; /* move address */
                outdatastart += 2880; /* move address */
            }
          }
          else
          {
            /* copying between HDUs in separate files */
            /* move to the initial copy position in each of the files */
            ffmbyt(infptr,  indatastart,  REPORT_EOF, status);
            ffmbyt(outfptr, outdatastart, IGNORE_EOF, status);
    
            for (ii = 0; ii < nb; ii++)
            {
                ffgbyt(infptr,  2880L, buffer, status); /* read input block */
                ffpbyt(outfptr, 2880L, buffer, status); /* write output block */
            }
          }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffwrhdu(fitsfile *infptr,    /* I - FITS file pointer to input file  */
                FILE *outstream,     /* I - stream to write HDU to */
                int *status)         /* IO - error status     */
    {
    /*
      write the data unit from the CHDU of infptr to the output file stream
    */
        long nb, ii;
        LONGLONG hdustart, hduend;
        char buffer[2880];
    
        if (*status > 0)
            return(*status);
    
        ffghadll(infptr, &hdustart,  NULL, &hduend, status);
    
        nb = (long) ((hduend - hdustart) / 2880);  /* number of blocks to copy */
    
        if (nb > 0)
        {
    
            /* move to the start of the HDU */
            ffmbyt(infptr,  hdustart,  REPORT_EOF, status);
    
            for (ii = 0; ii < nb; ii++)
            {
                ffgbyt(infptr,  2880L, buffer, status); /* read input block */
                fwrite(buffer, 1, 2880, outstream ); /* write to output stream */
            }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffiimg(fitsfile *fptr,      /* I - FITS file pointer           */
               int bitpix,          /* I - bits per pixel              */
               int naxis,           /* I - number of axes in the array */
               long *naxes,         /* I - size of each axis           */
               int *status)         /* IO - error status               */
    /*
      insert an IMAGE extension following the current HDU 
    */
    {
        LONGLONG tnaxes[99];
        int ii;
        
        if (*status > 0)
            return(*status);
    
        if (naxis > 99) {
            ffpmsg("NAXIS value is too large (>99)  (ffiimg)");
    	return(*status = 212);
        }
    
        for (ii = 0; (ii < naxis); ii++)
           tnaxes[ii] = naxes[ii];
           
        ffiimgll(fptr, bitpix, naxis, tnaxes, status);
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffiimgll(fitsfile *fptr,    /* I - FITS file pointer           */
               int bitpix,          /* I - bits per pixel              */
               int naxis,           /* I - number of axes in the array */
               LONGLONG *naxes,     /* I - size of each axis           */
               int *status)         /* IO - error status               */
    /*
      insert an IMAGE extension following the current HDU 
    */
    {
        int bytlen, nexthdu, maxhdu, ii, onaxis;
        long nblocks;
        LONGLONG npixels, newstart, datasize;
        char errmsg[FLEN_ERRMSG], card[FLEN_CARD], naxiskey[FLEN_KEYWORD];
    
        if (*status > 0)
            return(*status);
    
        if (fptr->HDUposition != (fptr->Fptr)->curhdu)
            ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status);
    
        maxhdu = (fptr->Fptr)->maxhdu;
    
        if (*status != PREPEND_PRIMARY)
        {
          /* if the current header is completely empty ...  */
          if (( (fptr->Fptr)->headend == (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu])
            /* or, if we are at the end of the file, ... */
          ||  ( (((fptr->Fptr)->curhdu) == maxhdu ) &&
           ((fptr->Fptr)->headstart[maxhdu + 1] >= (fptr->Fptr)->logfilesize ) ) )
          {
            /* then simply append new image extension */
            ffcrimll(fptr, bitpix, naxis, naxes, status);
            return(*status);
          }
        }
    
        if (bitpix == 8)
            bytlen = 1;
        else if (bitpix == 16)
            bytlen = 2;
        else if (bitpix == 32 || bitpix == -32)
            bytlen = 4;
        else if (bitpix == 64 || bitpix == -64)
            bytlen = 8;
        else
        {
            sprintf(errmsg,
            "Illegal value for BITPIX keyword: %d", bitpix);
            ffpmsg(errmsg);
            return(*status = BAD_BITPIX);  /* illegal bitpix value */
        }
        if (naxis < 0 || naxis > 999)
        {
            sprintf(errmsg,
            "Illegal value for NAXIS keyword: %d", naxis);
            ffpmsg(errmsg);
            return(*status = BAD_NAXIS);
        }
    
        for (ii = 0; ii < naxis; ii++)
        {
            if (naxes[ii] < 0)
            {
                sprintf(errmsg,
                "Illegal value for NAXIS%d keyword: %ld", ii + 1,  (long) naxes[ii]);
                ffpmsg(errmsg);
                return(*status = BAD_NAXES);
            }
        }
    
        /* calculate number of pixels in the image */
        if (naxis == 0)
            npixels = 0;
        else 
            npixels = naxes[0];
    
        for (ii = 1; ii < naxis; ii++)
            npixels = npixels * naxes[ii];
    
        datasize = npixels * bytlen;          /* size of image in bytes */
        nblocks = (long) (((datasize + 2879) / 2880) + 1);  /* +1 for the header */
    
        if ((fptr->Fptr)->writemode == READWRITE) /* must have write access */
        {   /* close the CHDU */
            ffrdef(fptr, status);  /* scan header to redefine structure */
            ffpdfl(fptr, status);  /* insure correct data file values */
        }
        else
            return(*status = READONLY_FILE);
    
        if (*status == PREPEND_PRIMARY)
        {
            /* inserting a new primary array; the current primary */
            /* array must be transformed into an image extension. */
    
            *status = 0;   
            ffmahd(fptr, 1, NULL, status);  /* move to the primary array */
    
            ffgidm(fptr, &onaxis, status);
            if (onaxis > 0)
                ffkeyn("NAXIS",onaxis, naxiskey, status);
            else
                strcpy(naxiskey, "NAXIS");
    
            ffgcrd(fptr, naxiskey, card, status);  /* read last NAXIS keyword */
            
            ffikyj(fptr, "PCOUNT", 0, "required keyword", status); /* add PCOUNT and */
            ffikyj(fptr, "GCOUNT", 1, "required keyword", status); /* GCOUNT keywords */
    
            if (*status > 0)
                return(*status);
    
            if (ffdkey(fptr, "EXTEND", status) ) /* delete the EXTEND keyword */
                *status = 0;
    
            /* redefine internal structure for this HDU */
            ffrdef(fptr, status);
    
    
            /* insert space for the primary array */
            if (ffiblk(fptr, nblocks, -1, status) > 0)  /* insert the blocks */
                return(*status);
    
            nexthdu = 0;  /* number of the new hdu */
            newstart = 0; /* starting addr of HDU */
        }
        else
        {
            nexthdu = ((fptr->Fptr)->curhdu) + 1; /* number of the next (new) hdu */
            newstart = (fptr->Fptr)->headstart[nexthdu]; /* save starting addr of HDU */
    
            (fptr->Fptr)->hdutype = IMAGE_HDU;  /* so that correct fill value is used */
            /* ffiblk also increments headstart for all following HDUs */
            if (ffiblk(fptr, nblocks, 1, status) > 0)  /* insert the blocks */
                return(*status);
        }
    
        ((fptr->Fptr)->maxhdu)++;      /* increment known number of HDUs in the file */
        for (ii = (fptr->Fptr)->maxhdu; ii > (fptr->Fptr)->curhdu; ii--)
            (fptr->Fptr)->headstart[ii + 1] = (fptr->Fptr)->headstart[ii]; /* incre start addr */
    
        if (nexthdu == 0)
           (fptr->Fptr)->headstart[1] = nblocks * 2880; /* start of the old Primary array */
    
        (fptr->Fptr)->headstart[nexthdu] = newstart; /* set starting addr of HDU */
    
        /* set default parameters for this new empty HDU */
        (fptr->Fptr)->curhdu = nexthdu;   /* we are now located at the next HDU */
        fptr->HDUposition = nexthdu;      /* we are now located at the next HDU */
        (fptr->Fptr)->nextkey = (fptr->Fptr)->headstart[nexthdu];  
        (fptr->Fptr)->headend = (fptr->Fptr)->headstart[nexthdu];
        (fptr->Fptr)->datastart = ((fptr->Fptr)->headstart[nexthdu]) + 2880;
        (fptr->Fptr)->hdutype = IMAGE_HDU;  /* might need to be reset... */
    
        /* write the required header keywords */
        ffphprll(fptr, TRUE, bitpix, naxis, naxes, 0, 1, TRUE, status);
    
        /* redefine internal structure for this HDU */
        ffrdef(fptr, status);
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffitab(fitsfile *fptr,  /* I - FITS file pointer                        */
               LONGLONG naxis1,     /* I - width of row in the table                */
               LONGLONG naxis2,     /* I - number of rows in the table              */
               int tfields,     /* I - number of columns in the table           */
               char **ttype,    /* I - name of each column                      */
               long *tbcol,     /* I - byte offset in row to each column        */
               char **tform,    /* I - value of TFORMn keyword for each column  */
               char **tunit,    /* I - value of TUNITn keyword for each column  */
               const char *extnmx,   /* I - value of EXTNAME keyword, if any         */
               int *status)     /* IO - error status                            */
    /*
      insert an ASCII table extension following the current HDU 
    */
    {
        int nexthdu, maxhdu, ii, nunit, nhead, ncols, gotmem = 0;
        long nblocks, rowlen;
        LONGLONG datasize, newstart;
        char errmsg[81], extnm[FLEN_VALUE];
    
        if (*status > 0)
            return(*status);
    
        extnm[0] = '\0';
        if (extnmx)
          strncat(extnm, extnmx, FLEN_VALUE-1);
    
        if (fptr->HDUposition != (fptr->Fptr)->curhdu)
            ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status);
    
        maxhdu = (fptr->Fptr)->maxhdu;
        /* if the current header is completely empty ...  */
        if (( (fptr->Fptr)->headend == (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu] )
            /* or, if we are at the end of the file, ... */
        ||  ( (((fptr->Fptr)->curhdu) == maxhdu ) &&
           ((fptr->Fptr)->headstart[maxhdu + 1] >= (fptr->Fptr)->logfilesize ) ) )
        {
            /* then simply append new image extension */
            ffcrtb(fptr, ASCII_TBL, naxis2, tfields, ttype, tform, tunit,
                   extnm, status);
            return(*status);
        }
    
        if (naxis1 < 0)
            return(*status = NEG_WIDTH);
        else if (naxis2 < 0)
            return(*status = NEG_ROWS);
        else if (tfields < 0 || tfields > 999)
        {
            sprintf(errmsg,
            "Illegal value for TFIELDS keyword: %d", tfields);
            ffpmsg(errmsg);
            return(*status = BAD_TFIELDS);
        }
    
        /* count number of optional TUNIT keywords to be written */
        nunit = 0;
        for (ii = 0; ii < tfields; ii++)
        {
            if (tunit && *tunit && *tunit[ii])
                nunit++;
        }
    
        if (*extnm)
             nunit++;     /* add one for the EXTNAME keyword */
    
        rowlen = (long) naxis1;
    
        if (!tbcol || !tbcol[0] || (!naxis1 && tfields)) /* spacing not defined? */
        {
          /* allocate mem for tbcol; malloc may have problems allocating small */
          /* arrays, so allocate at least 20 bytes */
    
          ncols = maxvalue(5, tfields);
          tbcol = (long *) calloc(ncols, sizeof(long));
    
          if (tbcol)
          {
            gotmem = 1;
    
            /* calculate width of a row and starting position of each column. */
            /* Each column will be separated by 1 blank space */
            ffgabc(tfields, tform, 1, &rowlen, tbcol, status);
          }
        }
    
        nhead = (9 + (3 * tfields) + nunit + 35) / 36;  /* no. of header blocks */
        datasize = (LONGLONG)rowlen * naxis2;          /* size of table in bytes */
        nblocks = (long) (((datasize + 2879) / 2880) + nhead);  /* size of HDU */
    
        if ((fptr->Fptr)->writemode == READWRITE) /* must have write access */
        {   /* close the CHDU */
            ffrdef(fptr, status);  /* scan header to redefine structure */
            ffpdfl(fptr, status);  /* insure correct data file values */
        }
        else
            return(*status = READONLY_FILE);
    
        nexthdu = ((fptr->Fptr)->curhdu) + 1; /* number of the next (new) hdu */
        newstart = (fptr->Fptr)->headstart[nexthdu]; /* save starting addr of HDU */
    
        (fptr->Fptr)->hdutype = ASCII_TBL;  /* so that correct fill value is used */
        /* ffiblk also increments headstart for all following HDUs */
        if (ffiblk(fptr, nblocks, 1, status) > 0)  /* insert the blocks */
        {
            if (gotmem)
                free(tbcol); 
            return(*status);
        }
    
        ((fptr->Fptr)->maxhdu)++;      /* increment known number of HDUs in the file */
        for (ii = (fptr->Fptr)->maxhdu; ii > (fptr->Fptr)->curhdu; ii--)
            (fptr->Fptr)->headstart[ii + 1] = (fptr->Fptr)->headstart[ii]; /* incre start addr */
    
        (fptr->Fptr)->headstart[nexthdu] = newstart; /* set starting addr of HDU */
    
        /* set default parameters for this new empty HDU */
        (fptr->Fptr)->curhdu = nexthdu;   /* we are now located at the next HDU */
        fptr->HDUposition = nexthdu;      /* we are now located at the next HDU */
        (fptr->Fptr)->nextkey = (fptr->Fptr)->headstart[nexthdu];  
        (fptr->Fptr)->headend = (fptr->Fptr)->headstart[nexthdu];
        (fptr->Fptr)->datastart = ((fptr->Fptr)->headstart[nexthdu]) + (nhead * 2880);
        (fptr->Fptr)->hdutype = ASCII_TBL;  /* might need to be reset... */
    
        /* write the required header keywords */
    
        ffphtb(fptr, rowlen, naxis2, tfields, ttype, tbcol, tform, tunit,
               extnm, status);
    
        if (gotmem)
            free(tbcol); 
    
        /* redefine internal structure for this HDU */
    
        ffrdef(fptr, status);
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffibin(fitsfile *fptr,  /* I - FITS file pointer                        */
               LONGLONG naxis2,     /* I - number of rows in the table              */
               int tfields,     /* I - number of columns in the table           */
               char **ttype,    /* I - name of each column                      */
               char **tform,    /* I - value of TFORMn keyword for each column  */
               char **tunit,    /* I - value of TUNITn keyword for each column  */
               const char *extnmx,     /* I - value of EXTNAME keyword, if any         */
               LONGLONG pcount, /* I - size of special data area (heap)         */
               int *status)     /* IO - error status                            */
    /*
      insert a Binary table extension following the current HDU 
    */
    {
        int nexthdu, maxhdu, ii, nunit, nhead, datacode;
        LONGLONG naxis1;
        long nblocks, repeat, width;
        LONGLONG datasize, newstart;
        char errmsg[81], extnm[FLEN_VALUE];
    
        if (*status > 0)
            return(*status);
    
        extnm[0] = '\0';
        if (extnmx)
          strncat(extnm, extnmx, FLEN_VALUE-1);
    
        if (fptr->HDUposition != (fptr->Fptr)->curhdu)
            ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status);
    
        maxhdu = (fptr->Fptr)->maxhdu;
        /* if the current header is completely empty ...  */
        if (( (fptr->Fptr)->headend == (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu] )
            /* or, if we are at the end of the file, ... */
        ||  ( (((fptr->Fptr)->curhdu) == maxhdu ) &&
           ((fptr->Fptr)->headstart[maxhdu + 1] >= (fptr->Fptr)->logfilesize ) ) )
        {
            /* then simply append new image extension */
            ffcrtb(fptr, BINARY_TBL, naxis2, tfields, ttype, tform, tunit,
                   extnm, status);
            return(*status);
        }
    
        if (naxis2 < 0)
            return(*status = NEG_ROWS);
        else if (tfields < 0 || tfields > 999)
        {
            sprintf(errmsg,
            "Illegal value for TFIELDS keyword: %d", tfields);
            ffpmsg(errmsg);
            return(*status = BAD_TFIELDS);
        }
    
        /* count number of optional TUNIT keywords to be written */
        nunit = 0;
        for (ii = 0; ii < tfields; ii++)
        {
            if (tunit && *tunit && *tunit[ii])
                nunit++;
        }
    
        if (*extnm)
             nunit++;     /* add one for the EXTNAME keyword */
    
        nhead = (9 + (2 * tfields) + nunit + 35) / 36;  /* no. of header blocks */
    
        /* calculate total width of the table */
        naxis1 = 0;
        for (ii = 0; ii < tfields; ii++)
        {
            ffbnfm(tform[ii], &datacode, &repeat, &width, status);
    
            if (datacode == TBIT)
                naxis1 = naxis1 + ((repeat + 7) / 8);
            else if (datacode == TSTRING)
                naxis1 += repeat;
            else
                naxis1 = naxis1 + (repeat * width);
        }
    
        datasize = ((LONGLONG)naxis1 * naxis2) + pcount;         /* size of table in bytes */
        nblocks = (long) ((datasize + 2879) / 2880) + nhead;  /* size of HDU */
    
        if ((fptr->Fptr)->writemode == READWRITE) /* must have write access */
        {   /* close the CHDU */
            ffrdef(fptr, status);  /* scan header to redefine structure */
            ffpdfl(fptr, status);  /* insure correct data file values */
        }
        else
            return(*status = READONLY_FILE);
    
        nexthdu = ((fptr->Fptr)->curhdu) + 1; /* number of the next (new) hdu */
        newstart = (fptr->Fptr)->headstart[nexthdu]; /* save starting addr of HDU */
    
        (fptr->Fptr)->hdutype = BINARY_TBL;  /* so that correct fill value is used */
    
        /* ffiblk also increments headstart for all following HDUs */
        if (ffiblk(fptr, nblocks, 1, status) > 0)  /* insert the blocks */
            return(*status);
    
        ((fptr->Fptr)->maxhdu)++;      /* increment known number of HDUs in the file */
        for (ii = (fptr->Fptr)->maxhdu; ii > (fptr->Fptr)->curhdu; ii--)
            (fptr->Fptr)->headstart[ii + 1] = (fptr->Fptr)->headstart[ii]; /* incre start addr */
    
        (fptr->Fptr)->headstart[nexthdu] = newstart; /* set starting addr of HDU */
    
        /* set default parameters for this new empty HDU */
        (fptr->Fptr)->curhdu = nexthdu;   /* we are now located at the next HDU */
        fptr->HDUposition = nexthdu;      /* we are now located at the next HDU */
        (fptr->Fptr)->nextkey = (fptr->Fptr)->headstart[nexthdu];  
        (fptr->Fptr)->headend = (fptr->Fptr)->headstart[nexthdu];
        (fptr->Fptr)->datastart = ((fptr->Fptr)->headstart[nexthdu]) + (nhead * 2880);
        (fptr->Fptr)->hdutype = BINARY_TBL;  /* might need to be reset... */
    
        /* write the required header keywords. This will write PCOUNT = 0 */
        /* so that the variable length data will be written at the right place */
        ffphbn(fptr, naxis2, tfields, ttype, tform, tunit, extnm, pcount,
               status);
    
        /* redefine internal structure for this HDU (with PCOUNT = 0) */
        ffrdef(fptr, status);
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffdhdu(fitsfile *fptr,      /* I - FITS file pointer                   */
               int *hdutype,        /* O - type of the new CHDU after deletion */
               int *status)         /* IO - error status                       */
    /*
      Delete the CHDU.  If the CHDU is the primary array, then replace the HDU
      with an empty primary array with no data.   Return the
      type of the new CHDU after the old CHDU is deleted.
    */
    {
        int tmptype = 0;
        long nblocks, ii, naxes[1];
    
        if (*status > 0)
            return(*status);
    
        if (fptr->HDUposition != (fptr->Fptr)->curhdu)
            ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status);
    
        if ((fptr->Fptr)->curhdu == 0) /* replace primary array with null image */
        {
            /* ignore any existing keywords */
            (fptr->Fptr)->headend = 0;
            (fptr->Fptr)->nextkey = 0;
    
            /* write default primary array header */
            ffphpr(fptr,1,8,0,naxes,0,1,1,status);
    
            /* calc number of blocks to delete (leave just 1 block) */
            nblocks = (long) (( (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu + 1] - 
                    2880 ) / 2880);
    
            /* ffdblk also updates the starting address of all following HDUs */
            if (nblocks > 0)
            {
                if (ffdblk(fptr, nblocks, status) > 0) /* delete the HDU */
                    return(*status);
            }
    
            /* this might not be necessary, but is doesn't hurt */
            (fptr->Fptr)->datastart = DATA_UNDEFINED;
    
            ffrdef(fptr, status);  /* reinitialize the primary array */
        }
        else
        {
    
            /* calc number of blocks to delete */
            nblocks = (long) (( (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu + 1] - 
                    (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu] ) / 2880);
    
            /* ffdblk also updates the starting address of all following HDUs */
            if (ffdblk(fptr, nblocks, status) > 0) /* delete the HDU */
                return(*status);
    
            /* delete the CHDU from the list of HDUs */
            for (ii = (fptr->Fptr)->curhdu + 1; ii <= (fptr->Fptr)->maxhdu; ii++)
                (fptr->Fptr)->headstart[ii] = (fptr->Fptr)->headstart[ii + 1];
    
            (fptr->Fptr)->headstart[(fptr->Fptr)->maxhdu + 1] = 0;
            ((fptr->Fptr)->maxhdu)--; /* decrement the known number of HDUs */
    
            if (ffrhdu(fptr, &tmptype, status) > 0)  /* initialize next HDU */
            {
                /* failed (end of file?), so move back one HDU */
                *status = 0;
                ffcmsg();       /* clear extraneous error messages */
                ffgext(fptr, ((fptr->Fptr)->curhdu) - 1, &tmptype, status);
            }
        }
    
        if (hdutype)
           *hdutype = tmptype;
    
        return(*status);
    }
    
    healpy-1.8.1/cfitsio/putcole.c0000654000175000017530000011315212272000775016677 0ustar  zoncaplanck00000000000000/*  This file, putcole.c, contains routines that write data elements to    */
    /*  a FITS image or table, with float datatype.                            */
    
    /*  The FITSIO software was written by William Pence at the High Energy    */
    /*  Astrophysic Science Archive Research Center (HEASARC) at the NASA      */
    /*  Goddard Space Flight Center.                                           */
    
    #include 
    #include 
    #include 
    #include "fitsio2.h"
    
    /*--------------------------------------------------------------------------*/
    int ffppre( fitsfile *fptr,  /* I - FITS file pointer                       */
                long  group,     /* I - group to write(1 = 1st group)           */
                LONGLONG firstelem, /* I - first vector element to write(1 = 1st)  */
                LONGLONG nelem,     /* I - number of values to write               */
                float *array,    /* I - array of values that are written        */
                int  *status)    /* IO - error status                           */
    /*
      Write an array of values to the primary array. Data conversion
      and scaling will be performed if necessary (e.g, if the datatype of
      the FITS array is not the same as the array being written).
    
      This routine cannot be called directly by users to write to large
      arrays with > 2**31 pixels (although CFITSIO can do so by passing
      the firstelem thru a LONGLONG sized global variable)
    */
    {
        long row;
        float nullvalue;
    
        /*
          the primary array is represented as a binary table:
          each group of the primary array is a row in the table,
          where the first column contains the group parameters
          and the second column contains the image itself.
        */
    
        if (fits_is_compressed_image(fptr, status))
        {
            /* this is a compressed image in a binary table */
    
            fits_write_compressed_pixels(fptr, TFLOAT, firstelem, nelem,
                0, array, &nullvalue, status);
            return(*status);
        }
    
        row=maxvalue(1,group);
    
        ffpcle(fptr, 2, row, firstelem, nelem, array, status);
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffppne( fitsfile *fptr,  /* I - FITS file pointer                       */
                long  group,     /* I - group to write(1 = 1st group)           */
                LONGLONG firstelem, /* I - first vector element to write(1 = 1st)  */
                LONGLONG nelem,     /* I - number of values to write               */
                float *array,    /* I - array of values that are written        */
                float nulval,    /* I - undefined pixel value                   */
                int  *status)    /* IO - error status                           */
    /*
      Write an array of values to the primary array. Data conversion
      and scaling will be performed if necessary (e.g, if the datatype of the
      FITS array is not the same as the array being written).  Any array values
      that are equal to the value of nulval will be replaced with the null
      pixel value that is appropriate for this column.
    
      This routine cannot be called directly by users to write to large
      arrays with > 2**31 pixels (although CFITSIO can do so by passing
      the firstelem thru a LONGLONG sized global variable)
    */
    {
        long row;
        float nullvalue;
    
        /*
          the primary array is represented as a binary table:
          each group of the primary array is a row in the table,
          where the first column contains the group parameters
          and the second column contains the image itself.
        */
    
        if (fits_is_compressed_image(fptr, status))
        {
            /* this is a compressed image in a binary table */
    
            nullvalue = nulval;  /* set local variable */
            fits_write_compressed_pixels(fptr, TFLOAT, firstelem, nelem,
                1, array, &nullvalue, status);
            return(*status);
        }
    
        row=maxvalue(1,group);
    
        ffpcne(fptr, 2, row, firstelem, nelem, array, nulval, status);
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffp2de(fitsfile *fptr,   /* I - FITS file pointer                     */
               long  group,      /* I - group to write(1 = 1st group)         */
               LONGLONG  ncols,      /* I - number of pixels in each row of array */
               LONGLONG  naxis1,     /* I - FITS image NAXIS1 value               */
               LONGLONG  naxis2,     /* I - FITS image NAXIS2 value               */
               float *array,     /* I - array to be written                   */
               int  *status)     /* IO - error status                         */
    /*
      Write an entire 2-D array of values to the primary array. Data conversion
      and scaling will be performed if necessary (e.g, if the datatype of the
      FITS array is not the same as the array being written).
    
      This routine does not support writing to large images with
      more than 2**31 pixels.
    */
    {
        /* call the 3D writing routine, with the 3rd dimension = 1 */
    
        ffp3de(fptr, group, ncols, naxis2, naxis1, naxis2, 1, array, status);
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffp3de(fitsfile *fptr,   /* I - FITS file pointer                     */
               long  group,      /* I - group to write(1 = 1st group)         */
               LONGLONG  ncols,      /* I - number of pixels in each row of array */
               LONGLONG  nrows,      /* I - number of rows in each plane of array */
               LONGLONG  naxis1,     /* I - FITS image NAXIS1 value               */
               LONGLONG  naxis2,     /* I - FITS image NAXIS2 value               */
               LONGLONG  naxis3,     /* I - FITS image NAXIS3 value               */
               float *array,     /* I - array to be written                   */
               int  *status)     /* IO - error status                         */
    /*
      Write an entire 3-D cube of values to the primary array. Data conversion
      and scaling will be performed if necessary (e.g, if the datatype of the
      FITS array is not the same as the array being written).
    
      This routine does not support writing to large images with
      more than 2**31 pixels.
    */
    {
        long tablerow, ii, jj;
        long fpixel[3]= {1,1,1}, lpixel[3];
        LONGLONG nfits, narray;
        /*
          the primary array is represented as a binary table:
          each group of the primary array is a row in the table,
          where the first column contains the group parameters
          and the second column contains the image itself.
        */
               
        if (fits_is_compressed_image(fptr, status))
        {
            /* this is a compressed image in a binary table */
            lpixel[0] = (long) ncols;
            lpixel[1] = (long) nrows;
            lpixel[2] = (long) naxis3;
           
            fits_write_compressed_img(fptr, TFLOAT, fpixel, lpixel,
                0,  array, NULL, status);
        
            return(*status);
        }
    
        tablerow=maxvalue(1,group);
    
        if (ncols == naxis1 && nrows == naxis2)  /* arrays have same size? */
        {
          /* all the image pixels are contiguous, so write all at once */
          ffpcle(fptr, 2, tablerow, 1L, naxis1 * naxis2 * naxis3, array, status);
          return(*status);
        }
    
        if (ncols < naxis1 || nrows < naxis2)
           return(*status = BAD_DIMEN);
    
        nfits = 1;   /* next pixel in FITS image to write to */
        narray = 0;  /* next pixel in input array to be written */
    
        /* loop over naxis3 planes in the data cube */
        for (jj = 0; jj < naxis3; jj++)
        {
          /* loop over the naxis2 rows in the FITS image, */
          /* writing naxis1 pixels to each row            */
    
          for (ii = 0; ii < naxis2; ii++)
          {
           if (ffpcle(fptr, 2, tablerow, nfits, naxis1,&array[narray],status) > 0)
             return(*status);
    
           nfits += naxis1;
           narray += ncols;
          }
          narray += (nrows - naxis2) * ncols;
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffpsse(fitsfile *fptr,   /* I - FITS file pointer                       */
               long  group,      /* I - group to write(1 = 1st group)           */
               long  naxis,      /* I - number of data axes in array            */
               long  *naxes,     /* I - size of each FITS axis                  */
               long  *fpixel,    /* I - 1st pixel in each axis to write (1=1st) */
               long  *lpixel,    /* I - last pixel in each axis to write        */
               float *array,     /* I - array to be written                     */
               int  *status)     /* IO - error status                           */
    /*
      Write a subsection of pixels to the primary array or image.
      A subsection is defined to be any contiguous rectangular
      array of pixels within the n-dimensional FITS data file.
      Data conversion and scaling will be performed if necessary 
      (e.g, if the datatype of the FITS array is not the same as
      the array being written).
    */
    {
        long tablerow;
        LONGLONG fpix[7], dimen[7], astart, pstart;
        LONGLONG off2, off3, off4, off5, off6, off7;
        LONGLONG st10, st20, st30, st40, st50, st60, st70;
        LONGLONG st1, st2, st3, st4, st5, st6, st7;
        long ii, i1, i2, i3, i4, i5, i6, i7, irange[7];
    
        if (*status > 0)
            return(*status);
    
        if (fits_is_compressed_image(fptr, status))
        {
            /* this is a compressed image in a binary table */
    
            fits_write_compressed_img(fptr, TFLOAT, fpixel, lpixel,
                0,  array, NULL, status);
        
            return(*status);
        }
    
        if (naxis < 1 || naxis > 7)
          return(*status = BAD_DIMEN);
    
        tablerow=maxvalue(1,group);
    
         /* calculate the size and number of loops to perform in each dimension */
        for (ii = 0; ii < 7; ii++)
        {
          fpix[ii]=1;
          irange[ii]=1;
          dimen[ii]=1;
        }
    
        for (ii = 0; ii < naxis; ii++)
        {    
          fpix[ii]=fpixel[ii];
          irange[ii]=lpixel[ii]-fpixel[ii]+1;
          dimen[ii]=naxes[ii];
        }
    
        i1=irange[0];
    
        /* compute the pixel offset between each dimension */
        off2 =     dimen[0];
        off3 = off2 * dimen[1];
        off4 = off3 * dimen[2];
        off5 = off4 * dimen[3];
        off6 = off5 * dimen[4];
        off7 = off6 * dimen[5];
    
        st10 = fpix[0];
        st20 = (fpix[1] - 1) * off2;
        st30 = (fpix[2] - 1) * off3;
        st40 = (fpix[3] - 1) * off4;
        st50 = (fpix[4] - 1) * off5;
        st60 = (fpix[5] - 1) * off6;
        st70 = (fpix[6] - 1) * off7;
    
        /* store the initial offset in each dimension */
        st1 = st10;
        st2 = st20;
        st3 = st30;
        st4 = st40;
        st5 = st50;
        st6 = st60;
        st7 = st70;
    
        astart = 0;
    
        for (i7 = 0; i7 < irange[6]; i7++)
        {
         for (i6 = 0; i6 < irange[5]; i6++)
         {
          for (i5 = 0; i5 < irange[4]; i5++)
          {
           for (i4 = 0; i4 < irange[3]; i4++)
           {
            for (i3 = 0; i3 < irange[2]; i3++)
            {
             pstart = st1 + st2 + st3 + st4 + st5 + st6 + st7;
    
             for (i2 = 0; i2 < irange[1]; i2++)
             {
               if (ffpcle(fptr, 2, tablerow, pstart, i1, &array[astart],
                  status) > 0)
                  return(*status);
    
               astart += i1;
               pstart += off2;
             }
             st2 = st20;
             st3 = st3+off3;    
            }
            st3 = st30;
            st4 = st4+off4;
           }
           st4 = st40;
           st5 = st5+off5;
          }
          st5 = st50;
          st6 = st6+off6;
         }
         st6 = st60;
         st7 = st7+off7;
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffpgpe( fitsfile *fptr,   /* I - FITS file pointer                      */
                long  group,      /* I - group to write(1 = 1st group)          */
                long  firstelem,  /* I - first vector element to write(1 = 1st) */
                long  nelem,      /* I - number of values to write              */
                float *array,     /* I - array of values that are written       */
                int  *status)     /* IO - error status                          */
    /*
      Write an array of group parameters to the primary array. Data conversion
      and scaling will be performed if necessary (e.g, if the datatype of
      the FITS array is not the same as the array being written).
    */
    {
        long row;
    
        /*
          the primary array is represented as a binary table:
          each group of the primary array is a row in the table,
          where the first column contains the group parameters
          and the second column contains the image itself.
        */
    
        row=maxvalue(1,group);
    
        ffpcle(fptr, 1L, row, firstelem, nelem, array, status);
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffpcle( fitsfile *fptr,  /* I - FITS file pointer                       */
                int  colnum,     /* I - number of column to write (1 = 1st col) */
                LONGLONG  firstrow,  /* I - first row to write (1 = 1st row)        */
                LONGLONG  firstelem, /* I - first vector element to write (1 = 1st) */
                LONGLONG  nelem,     /* I - number of values to write               */
                float *array,    /* I - array of values to write                */
                int  *status)    /* IO - error status                           */
    /*
      Write an array of values to a column in the current FITS HDU.
      The column number may refer to a real column in an ASCII or binary table, 
      or it may refer to a virtual column in a 1 or more grouped FITS primary
      array.  FITSIO treats a primary array as a binary table
      with 2 vector columns: the first column contains the group parameters (often
      with length = 0) and the second column contains the array of image pixels.
      Each row of the table represents a group in the case of multigroup FITS
      images.
    
      The input array of values will be converted to the datatype of the column 
      and will be inverse-scaled by the FITS TSCALn and TZEROn values if necessary.
    */
    {
        int tcode, maxelem2, hdutype, writeraw;
        long twidth, incre;
        long ntodo;
        LONGLONG repeat, startpos, elemnum, wrtptr, rowlen, rownum, remain, next, tnull, maxelem;
        double scale, zero;
        char tform[20], cform[20];
        char message[FLEN_ERRMSG];
    
        char snull[20];   /*  the FITS null value  */
    
        double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */
        void *buffer;
    
        if (*status > 0)           /* inherit input status value if > 0 */
            return(*status);
    
        buffer = cbuff;
    
        /*---------------------------------------------------*/
        /*  Check input and get parameters about the column: */
        /*---------------------------------------------------*/
        if (ffgcprll( fptr, colnum, firstrow, firstelem, nelem, 1, &scale, &zero,
            tform, &twidth, &tcode, &maxelem2, &startpos,  &elemnum, &incre,
            &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0)
            return(*status);
        maxelem = maxelem2;
    
        if (tcode == TSTRING)   
             ffcfmt(tform, cform);     /* derive C format for writing strings */
    
        /*
           if there is no scaling and the native machine format is not byteswapped
           then we can simply write the raw data bytes into the FITS file if the
           datatype of the FITS column is the same as the input values.  Otherwise,
           we must convert the raw values into the scaled and/or machine dependent
           format in a temporary buffer that has been allocated for this purpose.
        */
        if (scale == 1. && zero == 0. && 
           MACHINE == NATIVE && tcode == TFLOAT)
        {
            writeraw = 1;
            if (nelem < (LONGLONG)INT32_MAX) {
                maxelem = nelem;
            } else {
                maxelem = INT32_MAX/4;
            }
         }
        else
            writeraw = 0;
    
        /*---------------------------------------------------------------------*/
        /*  Now write the pixels to the FITS column.                           */
        /*  First call the ffXXfYY routine to  (1) convert the datatype        */
        /*  if necessary, and (2) scale the values by the FITS TSCALn and      */
        /*  TZEROn linear scaling parameters into a temporary buffer.          */
        /*---------------------------------------------------------------------*/
        remain = nelem;           /* remaining number of values to write  */
        next = 0;                 /* next element in array to be written  */
        rownum = 0;               /* row number, relative to firstrow     */
    
        while (remain)
        {
            /* limit the number of pixels to process a one time to the number that
               will fit in the buffer space or to the number of pixels that remain
               in the current vector, which ever is smaller.
            */
            ntodo = (long) minvalue(remain, maxelem);      
            ntodo = (long) minvalue(ntodo, (repeat - elemnum));
    
            wrtptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * incre);
    
            ffmbyt(fptr, wrtptr, IGNORE_EOF, status); /* move to write position */
    
            switch (tcode) 
            {
                case (TFLOAT):
                  if (writeraw)
                  {
                    /* write raw input bytes without conversion */
                    ffpr4b(fptr, ntodo, incre, &array[next], status);
                  }
                  else
                  {
                    /* convert the raw data before writing to FITS file */
                    ffr4fr4(&array[next], ntodo, scale, zero,
                            (float *) buffer, status);
                    ffpr4b(fptr, ntodo, incre, (float *) buffer, status);
                  }
    
                  break;
    
                case (TLONGLONG):
    
                    ffr4fi8(&array[next], ntodo, scale, zero,
                            (LONGLONG *) buffer, status);
                    ffpi8b(fptr, ntodo, incre, (long *) buffer, status);
                    break;
    
                case (TBYTE):
     
                    ffr4fi1(&array[next], ntodo, scale, zero, 
                            (unsigned char *) buffer, status);
                    ffpi1b(fptr, ntodo, incre, (unsigned char *) buffer, status);
                    break;
    
                case (TSHORT):
    
                    ffr4fi2(&array[next], ntodo, scale, zero,
                            (short *) buffer, status);
                    ffpi2b(fptr, ntodo, incre, (short *) buffer, status);
                    break;
    
                case (TLONG):
    
                    ffr4fi4(&array[next], ntodo, scale, zero,
                            (INT32BIT *) buffer, status);
                    ffpi4b(fptr, ntodo, incre, (INT32BIT *) buffer, status);
                    break;
    
                case (TDOUBLE):
                    ffr4fr8(&array[next], ntodo, scale, zero,
                           (double *) buffer, status);
                    ffpr8b(fptr, ntodo, incre, (double *) buffer, status);
                    break;
    
                case (TSTRING):  /* numerical column in an ASCII table */
    
                    if (cform[1] != 's')  /*  "%s" format is a string */
                    {
                      ffr4fstr(&array[next], ntodo, scale, zero, cform,
                              twidth, (char *) buffer, status);
    
                      if (incre == twidth)    /* contiguous bytes */
                         ffpbyt(fptr, ntodo * twidth, buffer, status);
                      else
                         ffpbytoff(fptr, twidth, ntodo, incre - twidth, buffer,
                                status);
    
                      break;
                    }
                    /* can't write to string column, so fall thru to default: */
    
                default:  /*  error trap  */
                    sprintf(message, 
                           "Cannot write numbers to column %d which has format %s",
                            colnum,tform);
                    ffpmsg(message);
                    if (hdutype == ASCII_TBL)
                        return(*status = BAD_ATABLE_FORMAT);
                    else
                        return(*status = BAD_BTABLE_FORMAT);
    
            } /* End of switch block */
    
            /*-------------------------*/
            /*  Check for fatal error  */
            /*-------------------------*/
            if (*status > 0)  /* test for error during previous write operation */
            {
              sprintf(message,
              "Error writing elements %.0f thru %.0f of input data array (ffpcle).",
                 (double) (next+1), (double) (next+ntodo));
             ffpmsg(message);
             return(*status);
            }
    
            /*--------------------------------------------*/
            /*  increment the counters for the next loop  */
            /*--------------------------------------------*/
            remain -= ntodo;
            if (remain)
            {
                next += ntodo;
                elemnum += ntodo;
                if (elemnum == repeat)  /* completed a row; start on next row */
                {
                    elemnum = 0;
                    rownum++;
                }
            }
        }  /*  End of main while Loop  */
    
    
        /*--------------------------------*/
        /*  check for numerical overflow  */
        /*--------------------------------*/
        if (*status == OVERFLOW_ERR)
        {
            ffpmsg(
            "Numerical overflow during type conversion while writing FITS data.");
            *status = NUM_OVERFLOW;
        }
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffpclc( fitsfile *fptr,  /* I - FITS file pointer                       */
                int  colnum,     /* I - number of column to write (1 = 1st col) */
                LONGLONG  firstrow,  /* I - first row to write (1 = 1st row)        */
                LONGLONG  firstelem, /* I - first vector element to write (1 = 1st) */
                LONGLONG  nelem,     /* I - number of values to write               */
                float *array,    /* I - array of values to write                */
                int  *status)    /* IO - error status                           */
    /*
      Write an array of complex values to a column in the current FITS HDU.
      Each complex number if interpreted as a pair of float values.
      The column number may refer to a real column in an ASCII or binary table, 
      or it may refer to a virtual column in a 1 or more grouped FITS primary
      array.  FITSIO treats a primary array as a binary table
      with 2 vector columns: the first column contains the group parameters (often
      with length = 0) and the second column contains the array of image pixels.
      Each row of the table represents a group in the case of multigroup FITS
      images.
    
      The input array of values will be converted to the datatype of the column
      if necessary, but normally complex values should only be written to a binary
      table with TFORMn = 'rC' where r is an optional repeat count. The TSCALn and
      TZERO keywords should not be used with complex numbers because mathmatically
      the scaling should only be applied to the real (first) component of the
      complex value.
    */
    {
        /* simply multiply the number of elements by 2, and call ffpcle */
    
        ffpcle(fptr, colnum, firstrow, (firstelem - 1) * 2 + 1,
                nelem * 2, array, status);
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffpcne( fitsfile *fptr,  /* I - FITS file pointer                       */
                int  colnum,     /* I - number of column to write (1 = 1st col) */
                LONGLONG  firstrow,  /* I - first row to write (1 = 1st row)        */
                LONGLONG  firstelem, /* I - first vector element to write (1 = 1st) */
                LONGLONG  nelem,     /* I - number of values to write               */
                float *array,    /* I - array of values to write                */
                float  nulvalue, /* I - value used to flag undefined pixels     */
                int  *status)    /* IO - error status                           */
    /*
      Write an array of elements to the specified column of a table.  Any input
      pixels equal to the value of nulvalue will be replaced by the appropriate
      null value in the output FITS file. 
    
      The input array of values will be converted to the datatype of the column 
      and will be inverse-scaled by the FITS TSCALn and TZEROn values if necessary
    */
    {
        tcolumn *colptr;
        LONGLONG  ngood = 0, nbad = 0, ii;
        LONGLONG repeat, first, fstelm, fstrow;
        int tcode, overflow = 0;
    
        if (*status > 0)
            return(*status);
    
        /* reset position to the correct HDU if necessary */
        if (fptr->HDUposition != (fptr->Fptr)->curhdu)
        {
            ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status);
        }
        else if ((fptr->Fptr)->datastart == DATA_UNDEFINED)
        {
            if ( ffrdef(fptr, status) > 0)               /* rescan header */
                return(*status);
        }
    
        colptr  = (fptr->Fptr)->tableptr;   /* point to first column */
        colptr += (colnum - 1);     /* offset to correct column structure */
    
        tcode  = colptr->tdatatype;
    
        if (tcode > 0)
           repeat = colptr->trepeat;  /* repeat count for this column */
        else
           repeat = firstelem -1 + nelem;  /* variable length arrays */
    
        if (abs(tcode) >= TCOMPLEX)
        { /* treat complex columns as pairs of numbers */
            repeat *= 2;
        }
        
        /* if variable length array, first write the whole input vector, 
           then go back and fill in the nulls */
        if (tcode < 0) {
          if (ffpcle(fptr, colnum, firstrow, firstelem, nelem, array, status) > 0) {
            if (*status == NUM_OVERFLOW) 
    	{
    	  /* ignore overflows, which are possibly the null pixel values */
    	  /*  overflow = 1;   */
    	  *status = 0;
    	} else { 
              return(*status);
    	}
          }
        }
    
        /* absolute element number in the column */
        first = (firstrow - 1) * repeat + firstelem;
    
        for (ii = 0; ii < nelem; ii++)
        {
          if (array[ii] != nulvalue)  /* is this a good pixel? */
          {
             if (nbad)  /* write previous string of bad pixels */
             {
                fstelm = ii - nbad + first;  /* absolute element number */
                fstrow = (fstelm - 1) / repeat + 1;  /* starting row number */
                fstelm = fstelm - (fstrow - 1) * repeat;  /* relative number */
    
                /* call ffpcluc, not ffpclu, in case we are writing to a
    	       complex ('C') binary table column */
                if (ffpcluc(fptr, colnum, fstrow, fstelm, nbad, status) > 0)
                    return(*status);
    
                nbad=0;
             }
    
             ngood = ngood +1;  /* the consecutive number of good pixels */
          }
          else
          {
             if (ngood)  /* write previous string of good pixels */
             {
                fstelm = ii - ngood + first;  /* absolute element number */
                fstrow = (fstelm - 1) / repeat + 1;  /* starting row number */
                fstelm = fstelm - (fstrow - 1) * repeat;  /* relative number */
    
                if (tcode > 0) {  /* variable length arrays have already been written */
                  if (ffpcle(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood],
                    status) > 0) {
    		if (*status == NUM_OVERFLOW) 
    		{
    		  overflow = 1;
    		  *status = 0;
    		} else { 
                      return(*status);
    		}
                  }
    	    }
                ngood=0;
             }
    
             nbad = nbad +1;  /* the consecutive number of bad pixels */
          }
        }
    
        /* finished loop;  now just write the last set of pixels */
    
        if (ngood)  /* write last string of good pixels */
        {
          fstelm = ii - ngood + first;  /* absolute element number */
          fstrow = (fstelm - 1) / repeat + 1;  /* starting row number */
          fstelm = fstelm - (fstrow - 1) * repeat;  /* relative number */
    
          if (tcode > 0) {  /* variable length arrays have already been written */
            ffpcle(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status);
          }
        }
        else if (nbad) /* write last string of bad pixels */
        {
          fstelm = ii - nbad + first;  /* absolute element number */
          fstrow = (fstelm - 1) / repeat + 1;  /* starting row number */
          fstelm = fstelm - (fstrow - 1) * repeat;  /* relative number */
          ffpcluc(fptr, colnum, fstrow, fstelm, nbad, status);
        }
        
        if (*status <= 0) {
          if (overflow) {
            *status = NUM_OVERFLOW;
          }
        }
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffr4fi1(float *input,          /* I - array of values to be converted  */
                long ntodo,            /* I - number of elements in the array  */
                double scale,          /* I - FITS TSCALn or BSCALE value      */
                double zero,           /* I - FITS TZEROn or BZERO  value      */
                unsigned char *output, /* O - output array of converted values */
                int *status)           /* IO - error status                    */
    /*
      Copy input to output prior to writing output to a FITS file.
      Do datatype conversion and scaling if required.
    */
    {
        long ii;
        double dvalue;
    
        if (scale == 1. && zero == 0.)
        {       
            for (ii = 0; ii < ntodo; ii++)
            {
                if (input[ii] < DUCHAR_MIN)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = 0;
                }
                else if (input[ii] > DUCHAR_MAX)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = UCHAR_MAX;
                }
                else
                    output[ii] = (unsigned char) input[ii];
            }
        }
        else
        {
            for (ii = 0; ii < ntodo; ii++)
            {
                dvalue = (input[ii] - zero) / scale;
    
                if (dvalue < DUCHAR_MIN)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = 0;
                }
                else if (dvalue > DUCHAR_MAX)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = UCHAR_MAX;
                }
                else
                    output[ii] = (unsigned char) (dvalue + .5);
            }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffr4fi2(float *input,      /* I - array of values to be converted  */
                long ntodo,        /* I - number of elements in the array  */
                double scale,      /* I - FITS TSCALn or BSCALE value      */
                double zero,       /* I - FITS TZEROn or BZERO  value      */
                short *output,     /* O - output array of converted values */
                int *status)       /* IO - error status                    */
    /*
      Copy input to output prior to writing output to a FITS file.
      Do datatype conversion and scaling if required.
    */
    {
        long ii;
        double dvalue;
    
        if (scale == 1. && zero == 0.)
        {           
            for (ii = 0; ii < ntodo; ii++)
            {
                if (input[ii] < DSHRT_MIN)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = SHRT_MIN;
                }
                else if (input[ii] > DSHRT_MAX)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = SHRT_MAX;
                }
                else
                    output[ii] = (short) input[ii];
            }
        }
        else
        {
            for (ii = 0; ii < ntodo; ii++)
            {
                dvalue = (input[ii] - zero) / scale;
    
                if (dvalue < DSHRT_MIN)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = SHRT_MIN;
                }
                else if (dvalue > DSHRT_MAX)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = SHRT_MAX;
                }
                else
                {
                    if (dvalue >= 0)
                        output[ii] = (short) (dvalue + .5);
                    else
                        output[ii] = (short) (dvalue - .5);
                }
            }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffr4fi4(float *input,      /* I - array of values to be converted  */
                long ntodo,        /* I - number of elements in the array  */
                double scale,      /* I - FITS TSCALn or BSCALE value      */
                double zero,       /* I - FITS TZEROn or BZERO  value      */
                INT32BIT *output,  /* O - output array of converted values */
                int *status)       /* IO - error status                    */
    /*
      Copy input to output prior to writing output to a FITS file.
      Do datatype conversion and scaling if required.
    */
    {
        long ii;
        double dvalue;
    
        if (scale == 1. && zero == 0.)
        {       
            for (ii = 0; ii < ntodo; ii++)
            {
                if (input[ii] < DINT_MIN)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = INT32_MIN;
                }
                else if (input[ii] > DINT_MAX)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = INT32_MAX;
                }
                else
                    output[ii] = (INT32BIT) input[ii];
            }
        }
        else
        {
            for (ii = 0; ii < ntodo; ii++)
            {
                dvalue = (input[ii] - zero) / scale;
    
                if (dvalue < DINT_MIN)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = INT32_MIN;
                }
                else if (dvalue > DINT_MAX)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = INT32_MAX;
                }
                else
                {
                    if (dvalue >= 0)
                        output[ii] = (INT32BIT) (dvalue + .5);
                    else
                        output[ii] = (INT32BIT) (dvalue - .5);
                }
            }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffr4fi8(float *input,      /* I - array of values to be converted  */
                long ntodo,        /* I - number of elements in the array  */
                double scale,      /* I - FITS TSCALn or BSCALE value      */
                double zero,       /* I - FITS TZEROn or BZERO  value      */
                LONGLONG *output,  /* O - output array of converted values */
                int *status)       /* IO - error status                    */
    /*
      Copy input to output prior to writing output to a FITS file.
      Do datatype conversion and scaling if required.
    */
    {
        long ii;
        double dvalue;
    
        if (scale == 1. && zero == 0.)
        {       
            for (ii = 0; ii < ntodo; ii++)
            {
                if (input[ii] < DLONGLONG_MIN)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = LONGLONG_MIN;
                }
                else if (input[ii] > DLONGLONG_MAX)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = LONGLONG_MAX;
                }
                else
                    output[ii] = (long) input[ii];
            }
        }
        else
        {
            for (ii = 0; ii < ntodo; ii++)
            {
                dvalue = (input[ii] - zero) / scale;
    
                if (dvalue < DLONGLONG_MIN)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = LONGLONG_MIN;
                }
                else if (dvalue > DINT_MAX)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = LONGLONG_MAX;
                }
                else
                {
                    if (dvalue >= 0)
                        output[ii] = (LONGLONG) (dvalue + .5);
                    else
                        output[ii] = (LONGLONG) (dvalue - .5);
                }
            }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffr4fr4(float *input,      /* I - array of values to be converted  */
                long ntodo,        /* I - number of elements in the array  */
                double scale,      /* I - FITS TSCALn or BSCALE value      */
                double zero,       /* I - FITS TZEROn or BZERO  value      */
                float *output,     /* O - output array of converted values */
                int *status)       /* IO - error status                    */
    /*
      Copy input to output prior to writing output to a FITS file.
      Do datatype conversion and scaling if required.
    */
    {
        long ii;
    
        if (scale == 1. && zero == 0.)
        {       
          memcpy(output, input, ntodo * sizeof(float) ); /* copy input to output */
        }
        else
        {
            for (ii = 0; ii < ntodo; ii++)
                output[ii] = (float) ((input[ii] - zero) / scale);
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffr4fr8(float *input,      /* I - array of values to be converted  */
                long ntodo,        /* I - number of elements in the array  */
                double scale,      /* I - FITS TSCALn or BSCALE value      */
                double zero,       /* I - FITS TZEROn or BZERO  value      */
                double *output,    /* O - output array of converted values */
                int *status)       /* IO - error status                    */
    /*
      Copy input to output prior to writing output to a FITS file.
      Do datatype conversion and scaling if required.
    */
    {
        long ii;
    
        if (scale == 1. && zero == 0.)
        {       
            for (ii = 0; ii < ntodo; ii++)
                    output[ii] = (double) input[ii];
        }
        else
        {
            for (ii = 0; ii < ntodo; ii++)
                output[ii] = (input[ii] - zero) / scale;
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffr4fstr(float *input,     /* I - array of values to be converted  */
                long ntodo,        /* I - number of elements in the array  */
                double scale,      /* I - FITS TSCALn or BSCALE value      */
                double zero,       /* I - FITS TZEROn or BZERO  value      */
                char *cform,       /* I - format for output string values  */
                long twidth,       /* I - width of each field, in chars    */
                char *output,      /* O - output array of converted values */
                int *status)       /* IO - error status                    */
    /*
      Copy input to output prior to writing output to a FITS file.
      Do scaling if required.
    */
    {
        long ii;
        double dvalue;
        char *cptr;
        
        cptr = output;
    
        if (scale == 1. && zero == 0.)
        {       
            for (ii = 0; ii < ntodo; ii++)
            {
               sprintf(output, cform, (double) input[ii]);
               output += twidth;
    
               if (*output)  /* if this char != \0, then overflow occurred */
                  *status = OVERFLOW_ERR;
            }
        }
        else
        {
            for (ii = 0; ii < ntodo; ii++)
            {
              dvalue = (input[ii] - zero) / scale;
              sprintf(output, cform, dvalue);
              output += twidth;
    
              if (*output)  /* if this char != \0, then overflow occurred */
                *status = OVERFLOW_ERR;
            }
        }
    
        /* replace any commas with periods (e.g., in French locale) */
        while ((cptr = strchr(cptr, ','))) *cptr = '.';
        
        return(*status);
    }
    healpy-1.8.1/cfitsio/grparser.c0000654000175000017530000013315212272000775017053 0ustar  zoncaplanck00000000000000/*		T E M P L A T E   P A R S E R
    		=============================
    
    		by Jerzy.Borkowski@obs.unige.ch
    
    		Integral Science Data Center
    		ch. d'Ecogia 16
    		1290 Versoix
    		Switzerland
    
    14-Oct-98: initial release
    16-Oct-98: code cleanup, #include  included, now gcc -Wall prints no
    		warnings during compilation. Bugfix: now one can specify additional
    		columns in group HDU. Autoindexing also works in this situation
    		(colunms are number from 7 however).
    17-Oct-98: bugfix: complex keywords were incorrectly written (was TCOMPLEX should
    		be TDBLCOMPLEX).
    20-Oct-98: bugfix: parser was writing EXTNAME twice, when first HDU in template is
    		defined with XTENSION IMAGE then parser creates now dummy PHDU,
    		SIMPLE T is now allowed only at most once and in first HDU only.
    		WARNING: one should not define EXTNAME keyword for GROUP HDUs, as
    		they have them already defined by parser (EXTNAME = GROUPING).
    		Parser accepts EXTNAME oin GROUP HDU definition, but in this
    		case multiple EXTNAME keywords will present in HDU header.
    23-Oct-98: bugfix: unnecessary space was written to FITS file for blank
    		keywords.
    24-Oct-98: syntax change: empty lines and lines with only whitespaces are 
    		written to FITS files as blank keywords (if inside group/hdu
    		definition). Previously lines had to have at least 8 spaces.
    		Please note, that due to pecularities of CFITSIO if the
    		last keyword(s) defined for given HDU are blank keywords
    		consisting of only 80 spaces, then (some of) those keywords
    		may be silently deleted by CFITSIO.
    13-Nov-98: bugfix: parser was writing GRPNAME twice. Parser still creates
                    GRPNAME keywords for GROUP HDU's which do not specify them.
                    However, values (of form DEFAULT_GROUP_XXX) are assigned
                    not necessarily in order HDUs appear in template file, but
                    rather in order parser completes their creation in FITS
                    file. Also, when including files, if fopen fails, parser
                    tries to open file with a name = directory_of_top_level
                    file + name of file to be included, as long as name
                    of file to be included does not specify absolute pathname.
    16-Nov-98: bugfix to bugfix from 13-Nov-98
    19-Nov-98: EXTVER keyword is now automatically assigned value by parser.
    17-Dev-98: 2 new things added: 1st: CFITSIO_INCLUDE_FILES environment
    		variable can contain a colon separated list of directories
    		to look for when looking for template include files (and master
    		template also). 2nd: it is now possible to append template
    		to nonempty FITS. file. fitsfile *ff no longer needs to point
    		to an empty FITS file with 0 HDUs in it. All data written by
    		parser will simple be appended at the end of file.
    22-Jan-99: changes to parser: when in append mode parser initially scans all
    		existing HDUs to built a list of already used EXTNAME/EXTVERs
    22-Jan-99: Bruce O'Neel, bugfix : TLONG should always reference long type
    		variable on OSF/Alpha and on 64-bit archs in general
    20-Jun-2002 Wm Pence, added support for the HIERARCH keyword convention in
                    which keyword names can effectively be longer than 8 characters.
                    Example:
                    HIERARCH  LongKeywordName = 'value' / comment
    30-Jan-2003 Wm Pence, bugfix: ngp_read_xtension was testing for "ASCIITABLE" 
                    instead of "TABLE" as the XTENSION value of an ASCII table,
                    and it did not allow for optional trailing spaces in the
                    "IMAGE" or "TABLE" string. 
    16-Dec-2003 James Peachey: ngp_keyword_all_write was modified to apply
                    comments from the template file to the output file in
                    the case of reserved keywords (e.g. tform#, ttype# etcetera).
    */
    
    
    #include 
    #include 
    
    #ifdef sparc
    #include 
    #include 
    #endif
    
    #include 
    #include "fitsio2.h"
    #include "grparser.h"
    
    NGP_RAW_LINE	ngp_curline = { NULL, NULL, NULL, NGP_TTYPE_UNKNOWN, NULL, NGP_FORMAT_OK, 0 };
    NGP_RAW_LINE	ngp_prevline = { NULL, NULL, NULL, NGP_TTYPE_UNKNOWN, NULL, NGP_FORMAT_OK, 0 };
    
    int		ngp_inclevel = 0;		/* number of included files, 1 - means mean file */
    int		ngp_grplevel = 0;		/* group nesting level, 0 - means no grouping */
    
    FILE		*ngp_fp[NGP_MAX_INCLUDE];	/* stack of included file handles */
    int		ngp_keyidx = NGP_TOKEN_UNKNOWN;	/* index of token in current line */
    NGP_TOKEN	ngp_linkey;			/* keyword after line analyze */
    
    char            ngp_master_dir[NGP_MAX_FNAME];  /* directory of top level include file */
    
    NGP_TKDEF	ngp_tkdef[] = 			/* tokens recognized by parser */
          { {	"\\INCLUDE",	NGP_TOKEN_INCLUDE },
    	{	"\\GROUP",	NGP_TOKEN_GROUP },
    	{	"\\END",	NGP_TOKEN_END },
    	{	"XTENSION",	NGP_TOKEN_XTENSION },
    	{	"SIMPLE",	NGP_TOKEN_SIMPLE },
    	{	NULL,		NGP_TOKEN_UNKNOWN }
          };
    
    int	master_grp_idx = 1;			/* current unnamed group in object */
    
    int		ngp_extver_tab_size = 0;
    NGP_EXTVER_TAB	*ngp_extver_tab = NULL;
    
    
    int	ngp_get_extver(char *extname, int *version)
     { NGP_EXTVER_TAB *p;
       char 	*p2;
       int		i;
    
       if ((NULL == extname) || (NULL == version)) return(NGP_BAD_ARG);
       if ((NULL == ngp_extver_tab) && (ngp_extver_tab_size > 0)) return(NGP_BAD_ARG);
       if ((NULL != ngp_extver_tab) && (ngp_extver_tab_size <= 0)) return(NGP_BAD_ARG);
    
       for (i=0; i 0)) return(NGP_BAD_ARG);
       if ((NULL != ngp_extver_tab) && (ngp_extver_tab_size <= 0)) return(NGP_BAD_ARG);
    
       for (i=0; i ngp_extver_tab[i].version)  ngp_extver_tab[i].version = version;
              return(NGP_OK);
            }
        }
    
       if (NULL == ngp_extver_tab)
         { p = (NGP_EXTVER_TAB *)ngp_alloc(sizeof(NGP_EXTVER_TAB)); }
       else
         { p = (NGP_EXTVER_TAB *)ngp_realloc(ngp_extver_tab, (ngp_extver_tab_size + 1) * sizeof(NGP_EXTVER_TAB)); }
    
       if (NULL == p) return(NGP_NO_MEMORY);
    
       p2 = ngp_alloc(strlen(extname) + 1);
       if (NULL == p2)
         { ngp_free(p);
           return(NGP_NO_MEMORY);
         }
    
       strcpy(p2, extname);
       ngp_extver_tab = p;
       ngp_extver_tab[ngp_extver_tab_size].extname = p2;
       ngp_extver_tab[ngp_extver_tab_size].version = version;
    
       ngp_extver_tab_size++;
    
       return(NGP_OK);
     }
    
    
    int	ngp_delete_extver_tab(void)
     { int i;
    
       if ((NULL == ngp_extver_tab) && (ngp_extver_tab_size > 0)) return(NGP_BAD_ARG);
       if ((NULL != ngp_extver_tab) && (ngp_extver_tab_size <= 0)) return(NGP_BAD_ARG);
       if ((NULL == ngp_extver_tab) && (0 == ngp_extver_tab_size)) return(NGP_OK);
    
       for (i=0; i= 'a') && (c1 <= 'z')) c1 += ('A' - 'a');
    
          c2 = *p2;
          if ((c2 >= 'a') && (c2 <= 'z')) c2 += ('A' - 'a');
    
          if (c1 < c2) return(-1);
          if (c1 > c2) return(1);
          if (0 == c1) return(0);
          p1++;
          p2++;
        }
     }
    
    int	ngp_strcasencmp(char *p1, char *p2, int n)
     { char c1, c2;
       int ii;
    
       for (ii=0;ii= 'a') && (c1 <= 'z')) c1 += ('A' - 'a');
    
          c2 = *p2;
          if ((c2 >= 'a') && (c2 <= 'z')) c2 += ('A' - 'a');
    
          if (c1 < c2) return(-1);
          if (c1 > c2) return(1);
          if (0 == c1) return(0);
          p1++;
          p2++;
        }
        return(0);
     }
    
    	/* read one line from file */
    
    int	ngp_line_from_file(FILE *fp, char **p)
     { int	c, r, llen, allocsize, alen;
       char	*p2;
    
       if (NULL == fp) return(NGP_NUL_PTR);		/* check for stupid args */
       if (NULL == p) return(NGP_NUL_PTR);		/* more foolproof checks */
       
       r = NGP_OK;					/* initialize stuff, reset err code */
       llen = 0;					/* 0 characters read so far */
       *p = (char *)ngp_alloc(1);			/* preallocate 1 byte */
       allocsize = 1;				/* signal that we have allocated 1 byte */
       if (NULL == *p) return(NGP_NO_MEMORY);	/* if this failed, system is in dire straits */
    
       for (;;)
        { c = getc(fp);				/* get next character */
          if ('\r' == c) continue;			/* carriage return character ?  Just ignore it */
          if (EOF == c)				/* EOF signalled ? */
            { 
              if (ferror(fp)) r = NGP_READ_ERR;	/* was it real error or simply EOF ? */
    	  if (0 == llen) return(NGP_EOF);	/* signal EOF only if 0 characters read so far */
              break;
            }
          if ('\n' == c) break;			/* end of line character ? */
          
          llen++;					/* we have new character, make room for it */
          alen = ((llen + NGP_ALLOCCHUNK) / NGP_ALLOCCHUNK) * NGP_ALLOCCHUNK;
          if (alen > allocsize)
            { p2 = (char *)ngp_realloc(*p, alen);	/* realloc buffer, if there is need */
              if (NULL == p2)
                { r = NGP_NO_MEMORY;
                  break;
                }
    	  *p = p2;
              allocsize = alen;
            }
          (*p)[llen - 1] = c;			/* copy character to buffer */
        }
    
       llen++;					/* place for terminating \0 */
       if (llen != allocsize)
         { p2 = (char *)ngp_realloc(*p, llen);
           if (NULL == p2) r = NGP_NO_MEMORY;
           else
             { *p = p2;
               (*p)[llen - 1] = 0;			/* copy \0 to buffer */
             }         
         }
       else
         { (*p)[llen - 1] = 0;			/* necessary when line read was empty */
         }
    
       if ((NGP_EOF != r) && (NGP_OK != r))		/* in case of errors free resources */
         { ngp_free(*p);
           *p = NULL;
         }
       
       return(r);					/* return  status code */
     }
    
    	/* free current line structure */
    
    int	ngp_free_line(void)
     {
       if (NULL != ngp_curline.line)
         { ngp_free(ngp_curline.line);
           ngp_curline.line = NULL;
           ngp_curline.name = NULL;
           ngp_curline.value = NULL;
           ngp_curline.comment = NULL;
           ngp_curline.type = NGP_TTYPE_UNKNOWN;
           ngp_curline.format = NGP_FORMAT_OK;
           ngp_curline.flags = 0;
         }
       return(NGP_OK);
     }
    
    	/* free cached line structure */
    
    int	ngp_free_prevline(void)
     {
       if (NULL != ngp_prevline.line)
         { ngp_free(ngp_prevline.line);
           ngp_prevline.line = NULL;
           ngp_prevline.name = NULL;
           ngp_prevline.value = NULL;
           ngp_prevline.comment = NULL;
           ngp_prevline.type = NGP_TTYPE_UNKNOWN;
           ngp_prevline.format = NGP_FORMAT_OK;
           ngp_prevline.flags = 0;
         }
       return(NGP_OK);
     }
    
    	/* read one line */
    
    int	ngp_read_line_buffered(FILE *fp)
     {
       ngp_free_line();				/* first free current line (if any) */
       
       if (NULL != ngp_prevline.line)		/* if cached, return cached line */
         { ngp_curline = ngp_prevline;
           ngp_prevline.line = NULL;
           ngp_prevline.name = NULL;
           ngp_prevline.value = NULL;
           ngp_prevline.comment = NULL;
           ngp_prevline.type = NGP_TTYPE_UNKNOWN;
           ngp_prevline.format = NGP_FORMAT_OK;
           ngp_prevline.flags = 0;
           ngp_curline.flags = NGP_LINE_REREAD;
           return(NGP_OK);
         }
    
       ngp_curline.flags = 0;   			/* if not cached really read line from file */
       return(ngp_line_from_file(fp, &(ngp_curline.line)));
     }
    
    	/* unread line */
    
    int	ngp_unread_line(void)
     {
       if (NULL == ngp_curline.line)		/* nothing to unread */
         return(NGP_EMPTY_CURLINE);
    
       if (NULL != ngp_prevline.line)		/* we cannot unread line twice */
         return(NGP_UNREAD_QUEUE_FULL);
    
       ngp_prevline = ngp_curline;
       ngp_curline.line = NULL;
       return(NGP_OK);
     }
    
    	/* a first guess line decomposition */
    
    int	ngp_extract_tokens(NGP_RAW_LINE *cl)
     { char *p, *s;
       int	cl_flags, i;
    
       p = cl->line;				/* start from beginning of line */
       if (NULL == p) return(NGP_NUL_PTR);
    
       cl->name = cl->value = cl->comment = NULL;
       cl->type = NGP_TTYPE_UNKNOWN;
       cl->format = NGP_FORMAT_OK;
    
       cl_flags = 0;
    
       for (i=0;; i++)				/* if 8 spaces at beginning then line is comment */
        { if ((0 == *p) || ('\n' == *p))
            {					/* if line has only blanks -> write blank keyword */
              cl->line[0] = 0;			/* create empty name (0 length string) */
              cl->comment = cl->name = cl->line;
    	  cl->type = NGP_TTYPE_RAW;		/* signal write unformatted to FITS file */
              return(NGP_OK);
            }
          if ((' ' != *p) && ('\t' != *p)) break;
          if (i >= 7)
            { 
              cl->comment = p + 1;
              for (s = cl->comment;; s++)		/* filter out any EOS characters in comment */
               { if ('\n' == *s) *s = 0;
    	     if (0 == *s) break;
               }
              cl->line[0] = 0;			/* create empty name (0 length string) */
              cl->name = cl->line;
    	  cl->type = NGP_TTYPE_RAW;
              return(NGP_OK);
            }
          p++;
        }
    
       cl->name = p;
    
       for (;;)					/* we need to find 1st whitespace */
        { if ((0 == *p) || ('\n' == *p))
            { *p = 0;
              break;
            }
    
          /*
            from Richard Mathar, 2002-05-03, add 10 lines:
            if upper/lowercase HIERARCH followed also by an equal sign...
          */
          if( strncasecmp("HIERARCH",p,strlen("HIERARCH")) == 0 )
          {
               char * const eqsi=strchr(p,'=') ;
               if( eqsi )
               {
                  cl_flags |= NGP_FOUND_EQUAL_SIGN ;
                  p=eqsi ;
                  break ;
               }
          }
    
          if ((' ' == *p) || ('\t' == *p)) break;
          if ('=' == *p)
            { cl_flags |= NGP_FOUND_EQUAL_SIGN;
              break;
            }
    
          p++;
        }
    
       if (*p) *(p++) = 0;				/* found end of keyname so terminate string with zero */
    
       if ((!ngp_strcasecmp("HISTORY", cl->name))
        || (!ngp_strcasecmp("COMMENT", cl->name))
        || (!ngp_strcasecmp("CONTINUE", cl->name)))
         { cl->comment = p;
           for (s = cl->comment;; s++)		/* filter out any EOS characters in comment */
            { if ('\n' == *s) *s = 0;
    	  if (0 == *s) break;
            }
           cl->type = NGP_TTYPE_RAW;
           return(NGP_OK);
         }
    
       if (!ngp_strcasecmp("\\INCLUDE", cl->name))
         {
           for (;; p++)  if ((' ' != *p) && ('\t' != *p)) break; /* skip whitespace */
    
           cl->value = p;
           for (s = cl->value;; s++)		/* filter out any EOS characters */
            { if ('\n' == *s) *s = 0;
    	  if (0 == *s) break;
            }
           cl->type = NGP_TTYPE_UNKNOWN;
           return(NGP_OK);
         }
           
       for (;; p++)
        { if ((0 == *p) || ('\n' == *p))  return(NGP_OK);	/* test if at end of string */
          if ((' ' == *p) || ('\t' == *p)) continue; /* skip whitespace */
          if (cl_flags & NGP_FOUND_EQUAL_SIGN) break;
          if ('=' != *p) break;			/* ignore initial equal sign */
          cl_flags |= NGP_FOUND_EQUAL_SIGN;
        }
          
       if ('/' == *p)				/* no value specified, comment only */
         { p++;
           if ((' ' == *p) || ('\t' == *p)) p++;
           cl->comment = p;
           for (s = cl->comment;; s++)		/* filter out any EOS characters in comment */
            { if ('\n' == *s) *s = 0;
    	  if (0 == *s) break;
            }
           return(NGP_OK);
         }
    
       if ('\'' == *p)				/* we have found string within quotes */
         { cl->value = s = ++p;			/* set pointer to beginning of that string */
           cl->type = NGP_TTYPE_STRING;		/* signal that it is of string type */
    
           for (;;)					/* analyze it */
            { if ((0 == *p) || ('\n' == *p))	/* end of line -> end of string */
                { *s = 0; return(NGP_OK); }
    
              if ('\'' == *p)			/* we have found doublequote */
                { if ((0 == p[1]) || ('\n' == p[1]))/* doublequote is the last character in line */
                    { *s = 0; return(NGP_OK); }
                  if (('\t' == p[1]) || (' ' == p[1])) /* duoblequote was string terminator */
                    { *s = 0; p++; break; }
                  if ('\'' == p[1]) p++;		/* doublequote is inside string, convert "" -> " */ 
                }
    
              *(s++) = *(p++);			/* compact string in place, necess. by "" -> " conversion */
            }
         }
       else						/* regular token */
         { 
           cl->value = p;				/* set pointer to token */
           cl->type = NGP_TTYPE_UNKNOWN;		/* we dont know type at the moment */
           for (;; p++)				/* we need to find 1st whitespace */
            { if ((0 == *p) || ('\n' == *p))
                { *p = 0; return(NGP_OK); }
              if ((' ' == *p) || ('\t' == *p)) break;
            }
           if (*p)  *(p++) = 0;			/* found so terminate string with zero */
         }
           
       for (;; p++)
        { if ((0 == *p) || ('\n' == *p))  return(NGP_OK);	/* test if at end of string */
          if ((' ' != *p) && ('\t' != *p)) break;	/* skip whitespace */
        }
          
       if ('/' == *p)				/* no value specified, comment only */
         { p++;
           if ((' ' == *p) || ('\t' == *p)) p++;
           cl->comment = p;
           for (s = cl->comment;; s++)		/* filter out any EOS characters in comment */
            { if ('\n' == *s) *s = 0;
    	  if (0 == *s) break;
            }
           return(NGP_OK);
         }
    
       cl->format = NGP_FORMAT_ERROR;
       return(NGP_OK);				/* too many tokens ... */
     }
    
    /*      try to open include file. If open fails and fname
            does not specify absolute pathname, try to open fname
            in any directory specified in CFITSIO_INCLUDE_FILES
            environment variable. Finally try to open fname
            relative to ngp_master_dir, which is directory of top
            level include file
    */
    
    int	ngp_include_file(char *fname)		/* try to open include file */
     { char *p, *p2, *cp, *envar, envfiles[NGP_MAX_ENVFILES];
    
       if (NULL == fname) return(NGP_NUL_PTR);
    
       if (ngp_inclevel >= NGP_MAX_INCLUDE)		/* too many include files */
         return(NGP_INC_NESTING);
    
       if (NULL == (ngp_fp[ngp_inclevel] = fopen(fname, "r")))
         {                                          /* if simple open failed .. */
           envar = getenv("CFITSIO_INCLUDE_FILES");	/* scan env. variable, and retry to open */
    
           if (NULL != envar)			/* is env. variable defined ? */
             { strncpy(envfiles, envar, NGP_MAX_ENVFILES - 1);
               envfiles[NGP_MAX_ENVFILES - 1] = 0;	/* copy search path to local variable, env. is fragile */
    
               for (p2 = strtok(envfiles, ":"); NULL != p2; p2 = strtok(NULL, ":"))
                {
    	      cp = (char *)ngp_alloc(strlen(fname) + strlen(p2) + 2);
    	      if (NULL == cp) return(NGP_NO_MEMORY);
    
    	      strcpy(cp, p2);
    #ifdef  MSDOS
                  strcat(cp, "\\");			/* abs. pathname for MSDOS */
                   
    #else
                  strcat(cp, "/");			/* and for unix */
    #endif
    	      strcat(cp, fname);
    	  
    	      ngp_fp[ngp_inclevel] = fopen(cp, "r");
    	      ngp_free(cp);
    
    	      if (NULL != ngp_fp[ngp_inclevel]) break;
    	    }
            }
                                          
           if (NULL == ngp_fp[ngp_inclevel])	/* finally try to open relative to top level */
             {
    #ifdef  MSDOS
               if ('\\' == fname[0]) return(NGP_ERR_FOPEN); /* abs. pathname for MSDOS, does not support C:\\PATH */
    #else
               if ('/' == fname[0]) return(NGP_ERR_FOPEN); /* and for unix */
    #endif
               if (0 == ngp_master_dir[0]) return(NGP_ERR_FOPEN);
    
    	   p = ngp_alloc(strlen(fname) + strlen(ngp_master_dir) + 1);
               if (NULL == p) return(NGP_NO_MEMORY);
    
               strcpy(p, ngp_master_dir);		/* construct composite pathname */
               strcat(p, fname);			/* comp = master + fname */
    
               ngp_fp[ngp_inclevel] = fopen(p, "r");/* try to open composite */
               ngp_free(p);				/* we don't need buffer anymore */
    
               if (NULL == ngp_fp[ngp_inclevel])
                 return(NGP_ERR_FOPEN);		/* fail if error */
             }
         }
    
       ngp_inclevel++;
       return(NGP_OK);
     }
    
    
    /* read line in the intelligent way. All \INCLUDE directives are handled,
       empty and comment line skipped. If this function returns NGP_OK, than
       decomposed line (name, type, value in proper type and comment) are
       stored in ngp_linkey structure. ignore_blank_lines parameter is zero
       when parser is inside GROUP or HDU definition. Nonzero otherwise.
    */
    
    int	ngp_read_line(int ignore_blank_lines)
     { int r, nc, savec;
       unsigned k;
    
       if (ngp_inclevel <= 0)		/* do some sanity checking first */
         { ngp_keyidx = NGP_TOKEN_EOF;	/* no parents, so report error */
           return(NGP_OK);	
         }
       if (ngp_inclevel > NGP_MAX_INCLUDE)  return(NGP_INC_NESTING);
       if (NULL == ngp_fp[ngp_inclevel - 1]) return(NGP_NUL_PTR);
    
       for (;;)
        { switch (r = ngp_read_line_buffered(ngp_fp[ngp_inclevel - 1]))
           { case NGP_EOF:
    		ngp_inclevel--;			/* end of file, revert to parent */
    		if (ngp_fp[ngp_inclevel])	/* we can close old file */
    		  fclose(ngp_fp[ngp_inclevel]);
    
    		ngp_fp[ngp_inclevel] = NULL;
    		if (ngp_inclevel <= 0)
    		  { ngp_keyidx = NGP_TOKEN_EOF;	/* no parents, so report error */
    		    return(NGP_OK);	
    		  }
    		continue;
    
    	 case NGP_OK:
    		if (ngp_curline.flags & NGP_LINE_REREAD) return(r);
    		break;
    	 default:
    		return(r);
           }
          
          switch (ngp_curline.line[0])
           { case 0: if (0 == ignore_blank_lines) break; /* ignore empty lines if told so */
             case '#': continue;			/* ignore comment lines */
           }
          
          r = ngp_extract_tokens(&ngp_curline);	/* analyse line, extract tokens and comment */
          if (NGP_OK != r) return(r);
    
          if (NULL == ngp_curline.name)  continue;	/* skip lines consisting only of whitespaces */
    
          for (k = 0; k < strlen(ngp_curline.name); k++)
           { if ((ngp_curline.name[k] >= 'a') && (ngp_curline.name[k] <= 'z')) 
               ngp_curline.name[k] += 'A' - 'a';	/* force keyword to be upper case */
             if (k == 7) break;  /* only first 8 chars are required to be upper case */
           }
    
          for (k=0;; k++)				/* find index of keyword in keyword table */
           { if (NGP_TOKEN_UNKNOWN == ngp_tkdef[k].code) break;
             if (0 == strcmp(ngp_curline.name, ngp_tkdef[k].name)) break;
           }
    
          ngp_keyidx = ngp_tkdef[k].code;		/* save this index, grammar parser will need this */
    
          if (NGP_TOKEN_INCLUDE == ngp_keyidx)	/* if this is \INCLUDE keyword, try to include file */
            { if (NGP_OK != (r = ngp_include_file(ngp_curline.value))) return(r);
    	  continue;				/* and read next line */
            }
    
          ngp_linkey.type = NGP_TTYPE_UNKNOWN;	/* now, get the keyword type, it's a long story ... */
    
          if (NULL != ngp_curline.value)		/* if no value given signal it */
            { if (NGP_TTYPE_STRING == ngp_curline.type)  /* string type test */
                { ngp_linkey.type = NGP_TTYPE_STRING;
                  ngp_linkey.value.s = ngp_curline.value;
                }
              if (NGP_TTYPE_UNKNOWN == ngp_linkey.type) /* bool type test */
                { if ((!ngp_strcasecmp("T", ngp_curline.value)) || (!ngp_strcasecmp("F", ngp_curline.value)))
                    { ngp_linkey.type = NGP_TTYPE_BOOL;
                      ngp_linkey.value.b = (ngp_strcasecmp("T", ngp_curline.value) ? 0 : 1);
                    }
                }
              if (NGP_TTYPE_UNKNOWN == ngp_linkey.type) /* complex type test */
                { if (2 == sscanf(ngp_curline.value, "(%lg,%lg)%n", &(ngp_linkey.value.c.re), &(ngp_linkey.value.c.im), &nc))
                    { if ((' ' == ngp_curline.value[nc]) || ('\t' == ngp_curline.value[nc])
                       || ('\n' == ngp_curline.value[nc]) || (0 == ngp_curline.value[nc]))
                        { ngp_linkey.type = NGP_TTYPE_COMPLEX;
                        }
                    }
                }
              if (NGP_TTYPE_UNKNOWN == ngp_linkey.type) /* real type test */
                { if (strchr(ngp_curline.value, '.') && (1 == sscanf(ngp_curline.value, "%lg%n", &(ngp_linkey.value.d), &nc)))
                    {
    		 if ('D' == ngp_curline.value[nc]) {
    		   /* test if template used a 'D' rather than an 'E' as the exponent character (added by WDP in 12/2010) */
                       savec = nc;
    		   ngp_curline.value[nc] = 'E';
    		   sscanf(ngp_curline.value, "%lg%n", &(ngp_linkey.value.d), &nc);
    		   if ((' ' == ngp_curline.value[nc]) || ('\t' == ngp_curline.value[nc])
                        || ('\n' == ngp_curline.value[nc]) || (0 == ngp_curline.value[nc]))  {
                           ngp_linkey.type = NGP_TTYPE_REAL;
                         } else {  /* no, this is not a real value */
    		       ngp_curline.value[savec] = 'D';  /* restore the original D character */
     		     }
    		 } else {
    		  if ((' ' == ngp_curline.value[nc]) || ('\t' == ngp_curline.value[nc])
                       || ('\n' == ngp_curline.value[nc]) || (0 == ngp_curline.value[nc]))
                        { ngp_linkey.type = NGP_TTYPE_REAL;
                        }
                     } 
                    }
                }
              if (NGP_TTYPE_UNKNOWN == ngp_linkey.type) /* integer type test */
                { if (1 == sscanf(ngp_curline.value, "%d%n", &(ngp_linkey.value.i), &nc))
                    { if ((' ' == ngp_curline.value[nc]) || ('\t' == ngp_curline.value[nc])
                       || ('\n' == ngp_curline.value[nc]) || (0 == ngp_curline.value[nc]))
                        { ngp_linkey.type = NGP_TTYPE_INT;
                        }
                    }
                }
              if (NGP_TTYPE_UNKNOWN == ngp_linkey.type) /* force string type */
                { ngp_linkey.type = NGP_TTYPE_STRING;
                  ngp_linkey.value.s = ngp_curline.value;
                }
            }
          else
            { if (NGP_TTYPE_RAW == ngp_curline.type) ngp_linkey.type = NGP_TTYPE_RAW;
    	  else ngp_linkey.type = NGP_TTYPE_NULL;
    	}
    
          if (NULL != ngp_curline.comment)
            { strncpy(ngp_linkey.comment, ngp_curline.comment, NGP_MAX_COMMENT); /* store comment */
    	  ngp_linkey.comment[NGP_MAX_COMMENT - 1] = 0;
    	}
          else
            { ngp_linkey.comment[0] = 0;
            }
    
          strncpy(ngp_linkey.name, ngp_curline.name, NGP_MAX_NAME); /* and keyword's name */
          ngp_linkey.name[NGP_MAX_NAME - 1] = 0;
    
          if (strlen(ngp_linkey.name) > FLEN_KEYWORD)  /* WDP: 20-Jun-2002:  mod to support HIERARCH */
            { 
               return(NGP_BAD_ARG);		/* cfitsio does not allow names > 8 chars */
            }
          
          return(NGP_OK);			/* we have valid non empty line, so return success */
        }
     }
    
    	/* check whether keyword can be written as is */
    
    int	ngp_keyword_is_write(NGP_TOKEN *ngp_tok)
     { int i, j, l, spc;
                            /* indexed variables not to write */
    
       static char *nm[] = { "NAXIS", "TFORM", "TTYPE", NULL } ;
    
                            /* non indexed variables not allowed to write */
      
       static char *nmni[] = { "SIMPLE", "XTENSION", "BITPIX", "NAXIS", "PCOUNT",
                               "GCOUNT", "TFIELDS", "THEAP", "EXTEND", "EXTVER",
                               NULL } ;
    
       if (NULL == ngp_tok) return(NGP_NUL_PTR);
    
       for (j = 0; ; j++)           /* first check non indexed */
        { if (NULL == nmni[j]) break;
          if (0 == strcmp(nmni[j], ngp_tok->name)) return(NGP_BAD_ARG);
        } 
    
       for (j = 0; ; j++)           /* now check indexed */
        { if (NULL == nm[j]) return(NGP_OK);
          l = strlen(nm[j]);
          if ((l < 1) || (l > 5)) continue;
          if (0 == strncmp(nm[j], ngp_tok->name, l)) break;
        } 
    
       if ((ngp_tok->name[l] < '1') || (ngp_tok->name[l] > '9')) return(NGP_OK);
       spc = 0;
       for (i = l + 1; i < 8; i++)
        { if (spc) { if (' ' != ngp_tok->name[i]) return(NGP_OK); }
          else
           { if ((ngp_tok->name[i] >= '0') && (ngp_tok->name[i] <= '9')) continue;
             if (' ' == ngp_tok->name[i]) { spc = 1; continue; }
             if (0 == ngp_tok->name[i]) break;
             return(NGP_OK);
           }
        }
       return(NGP_BAD_ARG);
     }
    
    	/* write (almost) all keywords from given HDU to disk */
    
    int     ngp_keyword_all_write(NGP_HDU *ngph, fitsfile *ffp, int mode)
     { int		i, r, ib;
       char		buf[200];
       long		l;
    
    
       if (NULL == ngph) return(NGP_NUL_PTR);
       if (NULL == ffp) return(NGP_NUL_PTR);
       r = NGP_OK;
       
       for (i=0; itokcnt; i++)
        { r = ngp_keyword_is_write(&(ngph->tok[i]));
          if ((NGP_REALLY_ALL & mode) || (NGP_OK == r))
            { switch (ngph->tok[i].type)
               { case NGP_TTYPE_BOOL:
    			ib = ngph->tok[i].value.b;
    			fits_write_key(ffp, TLOGICAL, ngph->tok[i].name, &ib, ngph->tok[i].comment, &r);
    			break;
                 case NGP_TTYPE_STRING:
    			fits_write_key_longstr(ffp, ngph->tok[i].name, ngph->tok[i].value.s, ngph->tok[i].comment, &r);
    			break;
                 case NGP_TTYPE_INT:
    			l = ngph->tok[i].value.i;	/* bugfix - 22-Jan-99, BO - nonalignment of OSF/Alpha */
    			fits_write_key(ffp, TLONG, ngph->tok[i].name, &l, ngph->tok[i].comment, &r);
    			break;
                 case NGP_TTYPE_REAL:
    			fits_write_key(ffp, TDOUBLE, ngph->tok[i].name, &(ngph->tok[i].value.d), ngph->tok[i].comment, &r);
    			break;
                 case NGP_TTYPE_COMPLEX:
    			fits_write_key(ffp, TDBLCOMPLEX, ngph->tok[i].name, &(ngph->tok[i].value.c), ngph->tok[i].comment, &r);
    			break;
                 case NGP_TTYPE_NULL:
    			fits_write_key_null(ffp, ngph->tok[i].name, ngph->tok[i].comment, &r);
    			break;
                 case NGP_TTYPE_RAW:
    			if (0 == strcmp("HISTORY", ngph->tok[i].name))
    			  { fits_write_history(ffp, ngph->tok[i].comment, &r);
    			    break;
    			  }
    			if (0 == strcmp("COMMENT", ngph->tok[i].name))
    			  { fits_write_comment(ffp, ngph->tok[i].comment, &r);
    			    break;
    			  }
    			sprintf(buf, "%-8.8s%s", ngph->tok[i].name, ngph->tok[i].comment);
    			fits_write_record(ffp, buf, &r);
                            break;
               }
            }
          else if (NGP_BAD_ARG == r) /* enhancement 10 dec 2003, James Peachey: template comments replace defaults */
            { r = NGP_OK;						/* update comments of special keywords like TFORM */
              if (ngph->tok[i].comment && *ngph->tok[i].comment)	/* do not update with a blank comment */
                { fits_modify_comment(ffp, ngph->tok[i].name, ngph->tok[i].comment, &r);
                }
            }
          else /* other problem, typically a blank token */
            { r = NGP_OK;						/* skip this token, but continue */
            }
          if (r) return(r);
        }
         
       fits_set_hdustruc(ffp, &r);				/* resync cfitsio */
       return(r);
     }
    
    	/* init HDU structure */
    
    int	ngp_hdu_init(NGP_HDU *ngph)
     { if (NULL == ngph) return(NGP_NUL_PTR);
       ngph->tok = NULL;
       ngph->tokcnt = 0;
       return(NGP_OK);
     }
    
    	/* clear HDU structure */
    
    int	ngp_hdu_clear(NGP_HDU *ngph)
     { int i;
    
       if (NULL == ngph) return(NGP_NUL_PTR);
    
       for (i=0; itokcnt; i++)
        { if (NGP_TTYPE_STRING == ngph->tok[i].type)
            if (NULL != ngph->tok[i].value.s)
              { ngp_free(ngph->tok[i].value.s);
                ngph->tok[i].value.s = NULL;
              }
        }
    
       if (NULL != ngph->tok) ngp_free(ngph->tok);
    
       ngph->tok = NULL;
       ngph->tokcnt = 0;
    
       return(NGP_OK);
     }
    
    	/* insert new token to HDU structure */
    
    int	ngp_hdu_insert_token(NGP_HDU *ngph, NGP_TOKEN *newtok)
     { NGP_TOKEN *tkp;
       
       if (NULL == ngph) return(NGP_NUL_PTR);
       if (NULL == newtok) return(NGP_NUL_PTR);
    
       if (0 == ngph->tokcnt)
         tkp = (NGP_TOKEN *)ngp_alloc((ngph->tokcnt + 1) * sizeof(NGP_TOKEN));
       else
         tkp = (NGP_TOKEN *)ngp_realloc(ngph->tok, (ngph->tokcnt + 1) * sizeof(NGP_TOKEN));
    
       if (NULL == tkp) return(NGP_NO_MEMORY);
           
       ngph->tok = tkp;
       ngph->tok[ngph->tokcnt] = *newtok;
    
       if (NGP_TTYPE_STRING == newtok->type)
         { if (NULL != newtok->value.s)
             { ngph->tok[ngph->tokcnt].value.s = (char *)ngp_alloc(1 + strlen(newtok->value.s));
               if (NULL == ngph->tok[ngph->tokcnt].value.s) return(NGP_NO_MEMORY);
               strcpy(ngph->tok[ngph->tokcnt].value.s, newtok->value.s);
             }
         }
    
       ngph->tokcnt++;
       return(NGP_OK);
     }
    
    
    int	ngp_append_columns(fitsfile *ff, NGP_HDU *ngph, int aftercol)
     { int		r, i, j, exitflg, ngph_i;
       char 	*my_tform, *my_ttype;
       char		ngph_ctmp;
    
    
       if (NULL == ff) return(NGP_NUL_PTR);
       if (NULL == ngph) return(NGP_NUL_PTR);
       if (0 == ngph->tokcnt) return(NGP_OK);	/* nothing to do ! */
    
       r = NGP_OK;
       exitflg = 0;
    
       for (j=aftercol; jtok[i].name, "TFORM%d%c", &ngph_i, &ngph_ctmp))
               { if ((NGP_TTYPE_STRING == ngph->tok[i].type) && (ngph_i == (j + 1)))
       	    { my_tform = ngph->tok[i].value.s;
       	    }
                    }
             else if (1 == sscanf(ngph->tok[i].name, "TTYPE%d%c", &ngph_i, &ngph_ctmp))
               { if ((NGP_TTYPE_STRING == ngph->tok[i].type) && (ngph_i == (j + 1)))
                   { my_ttype = ngph->tok[i].value.s;
                   }
               }
             
             if ((NULL != my_tform) && (my_ttype[0])) break;
             
             if (i < (ngph->tokcnt - 1)) continue;
             exitflg = 1;
             break;
           }
          if ((NGP_OK == r) && (NULL != my_tform))
            fits_insert_col(ff, j + 1, my_ttype, my_tform, &r);
    
          if ((NGP_OK != r) || exitflg) break;
        }
       return(r);
     }
    
    	/* read complete HDU */
    
    int	ngp_read_xtension(fitsfile *ff, int parent_hn, int simple_mode)
     { int		r, exflg, l, my_hn, tmp0, incrementor_index, i, j;
       int		ngph_dim, ngph_bitpix, ngph_node_type, my_version;
       char		incrementor_name[NGP_MAX_STRING], ngph_ctmp;
       char 	*ngph_extname = 0;
       long		ngph_size[NGP_MAX_ARRAY_DIM];
       NGP_HDU	ngph;
       long		lv;
    
       incrementor_name[0] = 0;			/* signal no keyword+'#' found yet */
       incrementor_index = 0;
    
       if (NGP_OK != (r = ngp_hdu_init(&ngph))) return(r);
    
       if (NGP_OK != (r = ngp_read_line(0))) return(r);	/* EOF always means error here */
       switch (NGP_XTENSION_SIMPLE & simple_mode)
         {
           case 0:  if (NGP_TOKEN_XTENSION != ngp_keyidx) return(NGP_TOKEN_NOT_EXPECT);
    		break;
           default:	if (NGP_TOKEN_SIMPLE != ngp_keyidx) return(NGP_TOKEN_NOT_EXPECT);
    		break;
         }
           	
       if (NGP_OK != (r = ngp_hdu_insert_token(&ngph, &ngp_linkey))) return(r);
    
       for (;;)
        { if (NGP_OK != (r = ngp_read_line(0))) return(r);	/* EOF always means error here */
          exflg = 0;
          switch (ngp_keyidx)
           { 
    	 case NGP_TOKEN_SIMPLE:
    	 		r = NGP_TOKEN_NOT_EXPECT;
    			break;
    	 		                        
    	 case NGP_TOKEN_END:
             case NGP_TOKEN_XTENSION:
             case NGP_TOKEN_GROUP:
             		r = ngp_unread_line();	/* WARNING - not break here .... */
             case NGP_TOKEN_EOF:
    			exflg = 1;
     			break;
    
             default:	l = strlen(ngp_linkey.name);
    			if ((l >= 2) && (l <= 6))
    			  { if ('#' == ngp_linkey.name[l - 1])
    			      { if (0 == incrementor_name[0])
    			          { memcpy(incrementor_name, ngp_linkey.name, l - 1);
    			            incrementor_name[l - 1] = 0;
    			          }
    			        if (((l - 1) == (int)strlen(incrementor_name)) && (0 == memcmp(incrementor_name, ngp_linkey.name, l - 1)))
    			          { incrementor_index++;
    			          }
    			        sprintf(ngp_linkey.name + l - 1, "%d", incrementor_index);
    			      }
    			  }
    			r = ngp_hdu_insert_token(&ngph, &ngp_linkey);
     			break;
           }
          if ((NGP_OK != r) || exflg) break;
        }
    
       if (NGP_OK == r)
         { 				/* we should scan keywords, and calculate HDU's */
    				/* structure ourselves .... */
    
           ngph_node_type = NGP_NODE_INVALID;	/* init variables */
           ngph_bitpix = 0;
           ngph_extname = NULL;
           for (i=0; i=1) && (j <= NGP_MAX_ARRAY_DIM))
    		  { ngph_size[j - 1] = ngph.tok[i].value.i;
    		  }
                }
            }
    
           switch (ngph_node_type)
            { case NGP_NODE_IMAGE:
    			if (NGP_XTENSION_FIRST == ((NGP_XTENSION_FIRST | NGP_XTENSION_SIMPLE) & simple_mode))
    			  { 		/* if caller signals that this is 1st HDU in file */
    					/* and it is IMAGE defined with XTENSION, then we */
    					/* need create dummy Primary HDU */			  
    			    fits_create_img(ff, 16, 0, NULL, &r);
    			  }
    					/* create image */
    			fits_create_img(ff, ngph_bitpix, ngph_dim, ngph_size, &r);
    
    					/* update keywords */
    			if (NGP_OK == r)  r = ngp_keyword_all_write(&ngph, ff, NGP_NON_SYSTEM_ONLY);
    			break;
    
              case NGP_NODE_ATABLE:
              case NGP_NODE_BTABLE:
    					/* create table, 0 rows and 0 columns for the moment */
    			fits_create_tbl(ff, ((NGP_NODE_ATABLE == ngph_node_type)
    					     ? ASCII_TBL : BINARY_TBL),
    					0, 0, NULL, NULL, NULL, NULL, &r);
    			if (NGP_OK != r) break;
    
    					/* add columns ... */
    			r = ngp_append_columns(ff, &ngph, 0);
    			if (NGP_OK != r) break;
    
    					/* add remaining keywords */
    			r = ngp_keyword_all_write(&ngph, ff, NGP_NON_SYSTEM_ONLY);
    			if (NGP_OK != r) break;
    
    					/* if requested add rows */
    			if (ngph_size[1] > 0) fits_insert_rows(ff, 0, ngph_size[1], &r);
    			break;
    
    	  default:	r = NGP_BAD_ARG;
    	  		break;
    	}
    
         }
    
       if ((NGP_OK == r) && (NULL != ngph_extname))
         { r = ngp_get_extver(ngph_extname, &my_version);	/* write correct ext version number */
           lv = my_version;		/* bugfix - 22-Jan-99, BO - nonalignment of OSF/Alpha */
           fits_write_key(ff, TLONG, "EXTVER", &lv, "auto assigned by template parser", &r); 
         }
    
       if (NGP_OK == r)
         { if (parent_hn > 0)
             { fits_get_hdu_num(ff, &my_hn);
               fits_movabs_hdu(ff, parent_hn, &tmp0, &r);	/* link us to parent */
               fits_add_group_member(ff, NULL, my_hn, &r);
               fits_movabs_hdu(ff, my_hn, &tmp0, &r);
               if (NGP_OK != r) return(r);
             }
         }
    
       if (NGP_OK != r)					/* in case of error - delete hdu */
         { tmp0 = 0;
           fits_delete_hdu(ff, NULL, &tmp0);
         }
    
       ngp_hdu_clear(&ngph);
       return(r);
     }
    
    	/* read complete GROUP */
    
    int	ngp_read_group(fitsfile *ff, char *grpname, int parent_hn)
     { int		r, exitflg, l, my_hn, tmp0, incrementor_index;
       char		grnm[NGP_MAX_STRING];			/* keyword holding group name */
       char		incrementor_name[NGP_MAX_STRING];
       NGP_HDU	ngph;
    
       incrementor_name[0] = 0;			/* signal no keyword+'#' found yet */
       incrementor_index = 6;			/* first 6 cols are used by group */
    
       ngp_grplevel++;
       if (NGP_OK != (r = ngp_hdu_init(&ngph))) return(r);
    
       r = NGP_OK;
       if (NGP_OK != (r = fits_create_group(ff, grpname, GT_ID_ALL_URI, &r))) return(r);
       fits_get_hdu_num(ff, &my_hn);
       if (parent_hn > 0)
         { fits_movabs_hdu(ff, parent_hn, &tmp0, &r);	/* link us to parent */
           fits_add_group_member(ff, NULL, my_hn, &r);
           fits_movabs_hdu(ff, my_hn, &tmp0, &r);
           if (NGP_OK != r) return(r);
         }
    
       for (exitflg = 0; 0 == exitflg;)
        { if (NGP_OK != (r = ngp_read_line(0))) break;	/* EOF always means error here */
          switch (ngp_keyidx)
           {
    	 case NGP_TOKEN_SIMPLE:
    	 case NGP_TOKEN_EOF:
    			r = NGP_TOKEN_NOT_EXPECT;
    			break;
    
             case NGP_TOKEN_END:
             		ngp_grplevel--;
    			exitflg = 1;
    			break;
    
             case NGP_TOKEN_GROUP:
    			if (NGP_TTYPE_STRING == ngp_linkey.type)
    			  { strncpy(grnm, ngp_linkey.value.s, NGP_MAX_STRING);
    			  }
    			else
    			  { sprintf(grnm, "DEFAULT_GROUP_%d", master_grp_idx++);
    			  }
    			grnm[NGP_MAX_STRING - 1] = 0;
    			r = ngp_read_group(ff, grnm, my_hn);
    			break;			/* we can have many subsequent GROUP defs */
    
             case NGP_TOKEN_XTENSION:
             		r = ngp_unread_line();
             		if (NGP_OK != r) break;
             		r = ngp_read_xtension(ff, my_hn, 0);
    			break;			/* we can have many subsequent HDU defs */
    
             default:	l = strlen(ngp_linkey.name);
    			if ((l >= 2) && (l <= 6))
    			  { if ('#' == ngp_linkey.name[l - 1])
    			      { if (0 == incrementor_name[0])
    			          { memcpy(incrementor_name, ngp_linkey.name, l - 1);
    			            incrementor_name[l - 1] = 0;
    			          }
    			        if (((l - 1) == (int)strlen(incrementor_name)) && (0 == memcmp(incrementor_name, ngp_linkey.name, l - 1)))
    			          { incrementor_index++;
    			          }
    			        sprintf(ngp_linkey.name + l - 1, "%d", incrementor_index);
    			      }
    			  }
             		r = ngp_hdu_insert_token(&ngph, &ngp_linkey); 
    			break;			/* here we can add keyword */
           }
          if (NGP_OK != r) break;
        }
    
       fits_movabs_hdu(ff, my_hn, &tmp0, &r);	/* back to our HDU */
    
       if (NGP_OK == r)				/* create additional columns, if requested */
         r = ngp_append_columns(ff, &ngph, 6);
    
       if (NGP_OK == r)				/* and write keywords */
         r = ngp_keyword_all_write(&ngph, ff, NGP_NON_SYSTEM_ONLY);
    
       if (NGP_OK != r)			/* delete group in case of error */
         { tmp0 = 0;
           fits_remove_group(ff, OPT_RM_GPT, &tmp0);
         }
    
       ngp_hdu_clear(&ngph);		/* we are done with this HDU, so delete it */
       return(r);
     }
    
    		/* top level API functions */
    
    /* read whole template. ff should point to the opened empty fits file. */
    
    int	fits_execute_template(fitsfile *ff, char *ngp_template, int *status)
     { int		r, exit_flg, first_extension, i, my_hn, tmp0, keys_exist, more_keys, used_ver;
       char		grnm[NGP_MAX_STRING], used_name[NGP_MAX_STRING];
       long		luv;
    
       if (NULL == status) return(NGP_NUL_PTR);
       if (NGP_OK != *status) return(*status);
    
       if ((NULL == ff) || (NULL == ngp_template))
         { *status = NGP_NUL_PTR;
           return(*status);
         }
    
       ngp_inclevel = 0;				/* initialize things, not all should be zero */
       ngp_grplevel = 0;
       master_grp_idx = 1;
       exit_flg = 0;
       ngp_master_dir[0] = 0;			/* this should be before 1st call to ngp_include_file */
       first_extension = 1;				/* we need to create PHDU */
    
       if (NGP_OK != (r = ngp_delete_extver_tab()))
         { *status = r;
           return(r);
         }
    
       fits_get_hdu_num(ff, &my_hn);		/* our HDU position */
       if (my_hn <= 1)				/* check whether we really need to create PHDU */
         { fits_movabs_hdu(ff, 1, &tmp0, status);
           fits_get_hdrspace(ff, &keys_exist, &more_keys, status);
           fits_movabs_hdu(ff, my_hn, &tmp0, status);
           if (NGP_OK != *status) return(*status);	/* error here means file is corrupted */
           if (keys_exist > 0) first_extension = 0;	/* if keywords exist assume PHDU already exist */
         }
       else
         { first_extension = 0;			/* PHDU (followed by 1+ extensions) exist */
    
           for (i = 2; i<= my_hn; i++)
            { *status = NGP_OK;
              fits_movabs_hdu(ff, 1, &tmp0, status);
              if (NGP_OK != *status) break;
    
              fits_read_key(ff, TSTRING, "EXTNAME", used_name, NULL, status);
              if (NGP_OK != *status)  continue;
    
              fits_read_key(ff, TLONG, "EXTVER", &luv, NULL, status);
              used_ver = luv;			/* bugfix - 22-Jan-99, BO - nonalignment of OSF/Alpha */
              if (VALUE_UNDEFINED == *status)
                { used_ver = 1;
                  *status = NGP_OK;
                }
    
              if (NGP_OK == *status) *status = ngp_set_extver(used_name, used_ver);
            }
    
           fits_movabs_hdu(ff, my_hn, &tmp0, status);
         }
       if (NGP_OK != *status) return(*status);
                                                                              
       if (NGP_OK != (*status = ngp_include_file(ngp_template))) return(*status);
    
       for (i = strlen(ngp_template) - 1; i >= 0; i--) /* strlen is > 0, otherwise fopen failed */
        { 
    #ifdef MSDOS
          if ('\\' == ngp_template[i]) break;
    #else
          if ('/' == ngp_template[i]) break;
    #endif
        } 
          
       i++;
       if (i > (NGP_MAX_FNAME - 1)) i = NGP_MAX_FNAME - 1;
    
       if (i > 0)
         { memcpy(ngp_master_dir, ngp_template, i);
           ngp_master_dir[i] = 0;
         }
    
    
       for (;;)
        { if (NGP_OK != (r = ngp_read_line(1))) break;	/* EOF always means error here */
          switch (ngp_keyidx)
           {
             case NGP_TOKEN_SIMPLE:
    			if (0 == first_extension)	/* simple only allowed in first HDU */
    			  { r = NGP_TOKEN_NOT_EXPECT;
    			    break;
    			  }
    			if (NGP_OK != (r = ngp_unread_line())) break;
    			r = ngp_read_xtension(ff, 0, NGP_XTENSION_SIMPLE | NGP_XTENSION_FIRST);
    			first_extension = 0;
    			break;
    
             case NGP_TOKEN_XTENSION:
    			if (NGP_OK != (r = ngp_unread_line())) break;
    			r = ngp_read_xtension(ff, 0, (first_extension ? NGP_XTENSION_FIRST : 0));
    			first_extension = 0;
    			break;
    
             case NGP_TOKEN_GROUP:
    			if (NGP_TTYPE_STRING == ngp_linkey.type)
    			  { strncpy(grnm, ngp_linkey.value.s, NGP_MAX_STRING); }
    			else
    			  { sprintf(grnm, "DEFAULT_GROUP_%d", master_grp_idx++); }
    			grnm[NGP_MAX_STRING - 1] = 0;
    			r = ngp_read_group(ff, grnm, 0);
    			first_extension = 0;
    			break;
    
    	 case NGP_TOKEN_EOF:
    			exit_flg = 1;
    			break;
    
             default:	r = NGP_TOKEN_NOT_EXPECT;
    			break;
           }
          if (exit_flg || (NGP_OK != r)) break;
        }
    
    /* all top level HDUs up to faulty one are left intact in case of i/o error. It is up
       to the caller to call fits_close_file or fits_delete_file when this function returns
       error. */
    
       ngp_free_line();		/* deallocate last line (if any) */
       ngp_free_prevline();		/* deallocate cached line (if any) */
       ngp_delete_extver_tab();	/* delete extver table (if present), error ignored */
       
       *status = r;
       return(r);
     }
    healpy-1.8.1/cfitsio/README0000654000175000017530000001360712272000775015744 0ustar  zoncaplanck00000000000000                   CFITSIO Interface Library
    
    CFITSIO is a library of ANSI C routines for reading and writing FITS
    format data files.  A set of Fortran-callable wrapper routines are also
    included for the convenience of Fortran programmers.  This README file
    gives a brief summary of how to build and test CFITSIO, but the CFITSIO
    User's Guide, found in the files cfitsio.doc (plain text), cfitsio.tex
    (LaTeX source file), cfitsio.ps, or cfitsio.pdf should be
    referenced for the latest and most complete information.
    
    BUILDING CFITSIO
    ----------------
    
    The CFITSIO code is contained in about 40 *.c source files and several *.h
    header files.  The CFITSIO library is built on Unix systems by typing:
    
     >  ./configure [--prefix=/target/installation/path]
     >  make          (or  'make shared')
     >  make install  (this step is optional)
    
    at the operating system prompt.  The configure command customizes the
    Makefile for the particular system, then the `make' command compiles the
    source files and builds the library.  Type `./configure' and not simply
    `configure' to ensure that the configure script in the current directory
    is run and not some other system-wide configure script.  The optional
    'prefix' argument to configure gives the path to the directory where
    the CFITSIO library and include files should be installed via the later
    'make install' command. For example,
    
       > ./configure --prefix=/usr1/local
    
    will cause the 'make install' command to copy the CFITSIO libcfitsio file 
    to /usr1/local/lib and the necessary include files to /usr1/local/include
    (assuming of course that the  process has permission to write to these 
    directories).
    
    On VAX/VMS and ALPHA/VMS systems the make.com command file may be used
    to build the cfitsio.olb object library using the default G-floating
    point option for double variables.  The make\_dfloat.com and make\_ieee.com
    files may be used instead to build the library with the other floating
    point options.
    
    A precompiled DLL version of CFITSIO is available for IBM-PC users of
    the Borland or Microsoft Visual C++ compilers in the files
    cfitsiodll_xxxx_borland.zip and cfitsiodll_xxxx_vcc.zip, where 'xxxx'
    represents the current release number.  These zip archives also
    contains other files and instructions on how to use the CFITSIO DLL
    library. The CFITSIO library may also be built from the source code
    using the makefile.bc or makefile.vcc  files.  Finally, the makepc.bat
    file gives an example of  building CFITSIO with the Borland C++ v4.5
    compiler using simpler DOS commands.
    
    When building on Mac OS-X, users should follow the Unix instructions,
    above. Previous MacOS versions of the cfitsio library can be built by
    (1) un binhex and unstuff cfitsio_mac.sit.hqx, (2) put CFitsioPPC.mcp
    in the cfitsio directory, and (3) load CFitsioPPC.mcp into CodeWarrior
    Pro 5 and make.  This builds the cfitsio library for PPC.  There are
    also targets for both the test program and the speed test program.
    
    To use the MacOS port you can add Cfitsio PPC.lib to your Codewarrior
    Pro 5 project.  Note that this only has been tested for the PPC and
    probably won't work
     on 68k macs.
    
    TESTING CFITSIO
    ---------------
    
    The CFITSIO library should be tested by building and running
    the testprog.c program that is included with the release. 
    On Unix systems, type:
    -
        % make testprog
        % testprog > testprog.lis
        % diff testprog.lis testprog.out
        % cmp testprog.fit testprog.std
    -
     On VMS systems,
    (assuming cc is the name of the C compiler command), type:
    -
        $ cc testprog.c
        $ link testprog, cfitsio/lib
        $ run testprog
    -
    The testprog program should produce a FITS file called `testprog.fit'
    that is identical to the testprog.std FITS file included in this
    release.  The diagnostic messages (which were piped to the file
    testprog.lis in the Unix example) should be identical to the listing
    contained in the file testprog.out.  The 'diff' and 'cmp' commands
    shown above should not report any differences in the files.
    
    USING CFITSIO
    -------------
    
    The CFITSIO User's Guide, contained in the files cfitsio.doc (plain
    text file) and cfitsio.ps (postscript file), provides detailed
    documentation about how to build and use the CFITSIO library.
    It contains a description of every user-callable routine in the
    CFITSIO interface.
    
    The cookbook.c file provides some sample routines for performing common
    operations on various types of FITS files.  Programmers are urged to
    examine these routines for recommended programming practices when using
    CFITSIO.  Users are free to copy or modify these routines for their own
    purposes.
    
    SUPPORTED PLATFORMS
    -------------------
    
    CFITSIO has currently been tested on the following platforms:
    
       Operating System          Compiler
       ----------------          --------
      OPERATING SYSTEM           COMPILER
       Sun OS                     gcc and cc (3.0.1)
       Sun Solaris                gcc and cc
       Silicon Graphics IRIX      gcc and cc
       Silicon Graphics IRIX64    MIPS
       Dec Alpha OSF/1            gcc and cc
       DECstation  Ultrix         gcc
       Dec Alpha OpenVMS          cc 
       DEC VAX/VMS                gcc and cc
       HP-UX                      gcc
       IBM AIX                    gcc
       Linux                      gcc
       MkLinux                    DR3
       Windows 95/98/NT           Borland C++ V4.5
       Windows 95/98/NT/ME/XP     Microsoft/Compaq Visual C++ v5.0, v6.0
       Windows 95/98/NT           Cygwin gcc
       OS/2                       gcc + EMX
       Mac OS 7.1 or greater      Metrowerks 10.+
       Mac OS-X 10.1 or greater   cc (gcc)
    
    CFITSIO will probably run on most other Unix platforms without
    modification.  Cray supercomputers and IBM mainframe computers are
    currently not supported.
    
    Reports of any success or failure to run CFITSIO on other platforms
    would be appreciated.  Any problem reports or suggestions for
    improvements are also welcome and should be sent to the primary author.
    
    -------------------------------------------------------------------------
    William D. Pence
    HEASARC, NASA/GSFC
    email: William.D.Pence@nasa.gov
    healpy-1.8.1/cfitsio/drvrmem.c0000654000175000017530000010772112272000775016705 0ustar  zoncaplanck00000000000000/*  This file, drvrmem.c, contains driver routines for memory files.        */
    
    /*  The FITSIO software was written by William Pence at the High Energy    */
    /*  Astrophysic Science Archive Research Center (HEASARC) at the NASA      */
    /*  Goddard Space Flight Center.                                           */
    
    #include 
    #include 
    #include   /* apparently needed to define size_t */
    #include "fitsio2.h"
    
    /* prototype for .Z file uncompression function in zuncompress.c */
    int zuncompress2mem(char *filename, 
                 FILE *diskfile, 
                 char **buffptr, 
                 size_t *buffsize, 
                 void *(*mem_realloc)(void *p, size_t newsize),
                 size_t *filesize,
                 int *status);
    
    #define RECBUFLEN 1000
    
    static char stdin_outfile[FLEN_FILENAME];
    
    typedef struct    /* structure containing mem file structure */ 
    {
        char **memaddrptr;   /* Pointer to memory address pointer; */
                             /* This may or may not point to memaddr. */
        char *memaddr;       /* Pointer to starting memory address; may */
                             /* not always be used, so use *memaddrptr instead */
        size_t *memsizeptr;  /* Pointer to the size of the memory allocation. */
                             /* This may or may not point to memsize. */
        size_t memsize;      /* Size of the memory allocation; this may not */
                             /* always be used, so use *memsizeptr instead. */
        size_t deltasize;    /* Suggested increment for reallocating memory */
        void *(*mem_realloc)(void *p, size_t newsize);  /* realloc function */
        LONGLONG currentpos;   /* current file position, relative to start */
        LONGLONG fitsfilesize; /* size of the FITS file (always <= *memsizeptr) */
        FILE *fileptr;      /* pointer to compressed output disk file */
    } memdriver;
    
    static memdriver memTable[NMAXFILES];  /* allocate mem file handle tables */
    
    /*--------------------------------------------------------------------------*/
    int mem_init(void)
    {
        int ii;
    
        for (ii = 0; ii < NMAXFILES; ii++) /* initialize all empty slots in table */
        {
           memTable[ii].memaddrptr = 0;
           memTable[ii].memaddr = 0;
        }
        return(0);
    }
    /*--------------------------------------------------------------------------*/
    int mem_setoptions(int options)
    {
      /* do something with the options argument, to stop compiler warning */
      options = 0;
      return(options);
    }
    /*--------------------------------------------------------------------------*/
    int mem_getoptions(int *options)
    {
      *options = 0;
      return(0);
    }
    /*--------------------------------------------------------------------------*/
    int mem_getversion(int *version)
    {
        *version = 10;
        return(0);
    }
    /*--------------------------------------------------------------------------*/
    int mem_shutdown(void)
    {
      return(0);
    }
    /*--------------------------------------------------------------------------*/
    int mem_create(char *filename, int *handle)
    /*
      Create a new empty memory file for subsequent writes.
      The file name is ignored in this case.
    */
    {
        int status;
    
        /* initially allocate 1 FITS block = 2880 bytes */
        status = mem_createmem(2880L, handle);
    
        if (status)
        {
            ffpmsg("failed to create empty memory file (mem_create)");
            return(status);
        }
    
        return(0);
    }
    /*--------------------------------------------------------------------------*/
    int mem_create_comp(char *filename, int *handle)
    /*
      Create a new empty memory file for subsequent writes.
      Also create an empty compressed .gz file.  The memory file
      will be compressed and written to the disk file when the file is closed.
    */
    {
        FILE *diskfile;
        char mode[4];
        int  status;
    
        /* first, create disk file for the compressed output */
    
    
        if ( !strcmp(filename, "-.gz") || !strcmp(filename, "stdout.gz") ||
             !strcmp(filename, "STDOUT.gz") )
        {
           /* special case: create uncompressed FITS file in memory, then
              compress it an write it out to 'stdout' when it is closed.  */
    
           diskfile = stdout;
        }
        else
        {
            /* normal case: create disk file for the compressed output */
    
            strcpy(mode, "w+b");    /* create file with read-write */
    
            diskfile = fopen(filename, "r"); /* does file already exist? */
    
            if (diskfile)
            {
                fclose(diskfile);         /* close file and exit with error */
                return(FILE_NOT_CREATED); 
            }
    
    #if MACHINE == ALPHAVMS || MACHINE == VAXVMS
            /* specify VMS record structure: fixed format, 2880 byte records */
            /* but force stream mode access to enable random I/O access      */
            diskfile = fopen(filename, mode, "rfm=fix", "mrs=2880", "ctx=stm"); 
    #else
            diskfile = fopen(filename, mode); 
    #endif
    
            if (!(diskfile))           /* couldn't create file */
            {
                return(FILE_NOT_CREATED); 
            }
        }
    
        /* now create temporary memory file */
    
        /* initially allocate 1 FITS block = 2880 bytes */
        status = mem_createmem(2880L, handle);
    
        if (status)
        {
            ffpmsg("failed to create empty memory file (mem_create_comp)");
            return(status);
        }
    
        memTable[*handle].fileptr = diskfile;
    
        return(0);
    }
    /*--------------------------------------------------------------------------*/
    int mem_openmem(void **buffptr,   /* I - address of memory pointer          */
                    size_t *buffsize, /* I - size of buffer, in bytes           */
                    size_t deltasize, /* I - increment for future realloc's     */
                    void *(*memrealloc)(void *p, size_t newsize),  /* function  */
                    int *handle)
    /* 
      lowest level routine to open a pre-existing memory file.
    */
    {
        int ii;
    
        *handle = -1;
        for (ii = 0; ii < NMAXFILES; ii++)  /* find empty slot in handle table */
        {
            if (memTable[ii].memaddrptr == 0)
            {
                *handle = ii;
                break;
            }
        }
        if (*handle == -1)
           return(TOO_MANY_FILES);    /* too many files opened */
    
        memTable[ii].memaddrptr = (char **) buffptr; /* pointer to start addres */
        memTable[ii].memsizeptr = buffsize;     /* allocated size of memory */
        memTable[ii].deltasize = deltasize;     /* suggested realloc increment */
        memTable[ii].fitsfilesize = *buffsize;  /* size of FITS file (upper limit) */
        memTable[ii].currentpos = 0;            /* at beginning of the file */
        memTable[ii].mem_realloc = memrealloc;  /* memory realloc function */
        return(0);
    }
    /*--------------------------------------------------------------------------*/
    int mem_createmem(size_t msize, int *handle)
    /* 
      lowest level routine to allocate a memory file.
    */
    {
        int ii;
    
        *handle = -1;
        for (ii = 0; ii < NMAXFILES; ii++)  /* find empty slot in handle table */
        {
            if (memTable[ii].memaddrptr == 0)
            {
                *handle = ii;
                break;
            }
        }
        if (*handle == -1)
           return(TOO_MANY_FILES);    /* too many files opened */
    
        /* use the internally allocated memaddr and memsize variables */
        memTable[ii].memaddrptr = &memTable[ii].memaddr;
        memTable[ii].memsizeptr = &memTable[ii].memsize;
    
        /* allocate initial block of memory for the file */
        if (msize > 0)
        {
            memTable[ii].memaddr = (char *) malloc(msize); 
            if ( !(memTable[ii].memaddr) )
            {
                ffpmsg("malloc of initial memory failed (mem_createmem)");
                return(FILE_NOT_OPENED);
            }
        }
    
        /* set initial state of the file */
        memTable[ii].memsize = msize;
        memTable[ii].deltasize = 2880;
        memTable[ii].fitsfilesize = 0;
        memTable[ii].currentpos = 0;
        memTable[ii].mem_realloc = realloc;
        return(0);
    }
    /*--------------------------------------------------------------------------*/
    int mem_truncate(int handle, LONGLONG filesize)
    /*
      truncate the file to a new size
    */
    {
        char *ptr;
    
        /* call the memory reallocation function, if defined */
        if ( memTable[handle].mem_realloc )
        {    /* explicit LONGLONG->size_t cast */
            ptr = (memTable[handle].mem_realloc)(
                                    *(memTable[handle].memaddrptr),
                                     (size_t) filesize);
            if (!ptr)
            {
                ffpmsg("Failed to reallocate memory (mem_truncate)");
                return(MEMORY_ALLOCATION);
            }
    
            /* if allocated more memory, initialize it to zero */
            if ( filesize > *(memTable[handle].memsizeptr) )
            {
                 memset(ptr + *(memTable[handle].memsizeptr),
                        0,
                    ((size_t) filesize) - *(memTable[handle].memsizeptr) );
            }
    
            *(memTable[handle].memaddrptr) = ptr;
            *(memTable[handle].memsizeptr) = (size_t) (filesize);
        }
    
        memTable[handle].currentpos = filesize;
        memTable[handle].fitsfilesize = filesize;
        return(0);
    }
    /*--------------------------------------------------------------------------*/
    int stdin_checkfile(char *urltype, char *infile, char *outfile)
    /*
       do any special case checking when opening a file on the stdin stream
    */
    {
        if (strlen(outfile))
        {
            stdin_outfile[0] = '\0';
            strncat(stdin_outfile,outfile,FLEN_FILENAME-1); /* an output file is specified */
    	strcpy(urltype,"stdinfile://");
        }
        else
            *stdin_outfile = '\0';  /* no output file was specified */
    
        return(0);
    }
    /*--------------------------------------------------------------------------*/
    int stdin_open(char *filename, int rwmode, int *handle)
    /*
      open a FITS file from the stdin file stream by copying it into memory
      The file name is ignored in this case.
    */
    {
        int status;
        char cbuff;
    
        if (*stdin_outfile)
        {
          /* copy the stdin stream to the specified disk file then open the file */
    
          /* Create the output file */
          status =  file_create(stdin_outfile,handle);
    
          if (status)
          {
            ffpmsg("Unable to create output file to copy stdin (stdin_open):");
            ffpmsg(stdin_outfile);
            return(status);
          }
     
          /* copy the whole stdin stream to the file */
          status = stdin2file(*handle);
          file_close(*handle);
    
          if (status)
          {
            ffpmsg("failed to copy stdin to file (stdin_open)");
            ffpmsg(stdin_outfile);
            return(status);
          }
    
          /* reopen file with proper rwmode attribute */
          status = file_open(stdin_outfile, rwmode, handle);
        }
        else
        {
       
          /* get the first character, then put it back */
          cbuff = fgetc(stdin);
          ungetc(cbuff, stdin);
        
          /* compressed files begin with 037 or 'P' */
          if (cbuff == 31 || cbuff == 75)
          {
             /* looks like the input stream is compressed */
             status = mem_compress_stdin_open(filename, rwmode, handle);
    	 
          }
          else
          {
            /* copy the stdin stream into memory then open file in memory */
    
            if (rwmode != READONLY)
            {
              ffpmsg("cannot open stdin with WRITE access");
              return(READONLY_FILE);
            }
    
            status = mem_createmem(2880L, handle);
    
            if (status)
            {
              ffpmsg("failed to create empty memory file (stdin_open)");
              return(status);
            }
     
            /* copy the whole stdin stream into memory */
            status = stdin2mem(*handle);
    
            if (status)
            {
              ffpmsg("failed to copy stdin into memory (stdin_open)");
              free(memTable[*handle].memaddr);
            }
          }
        }
    
        return(status);
    }
    /*--------------------------------------------------------------------------*/
    int stdin2mem(int hd)  /* handle number */
    /*
      Copy the stdin stream into memory.  Fill whatever amount of memory
      has already been allocated, then realloc more memory if necessary.
    */
    {
        size_t nread, memsize, delta;
        LONGLONG filesize;
        char *memptr;
        char simple[] = "SIMPLE";
        int c, ii, jj;
    
        memptr = *memTable[hd].memaddrptr;
        memsize = *memTable[hd].memsizeptr;
        delta = memTable[hd].deltasize;
    
        filesize = 0;
        ii = 0;
    
        for(jj = 0; (c = fgetc(stdin)) != EOF && jj < 2000; jj++)
        {
           /* Skip over any garbage at the beginning of the stdin stream by */
           /* reading 1 char at a time, looking for 'S', 'I', 'M', 'P', 'L', 'E' */
           /* Give up if not found in the first 2000 characters */
    
           if (c == simple[ii])
           {
               ii++;
               if (ii == 6)   /* found the complete string? */
               {
                  memcpy(memptr, simple, 6);  /* copy "SIMPLE" to buffer */
                  filesize = 6;
                  break;
               }
           }
           else
              ii = 0;  /* reset search to beginning of the string */
        }
    
       if (filesize == 0)
       {
           ffpmsg("Couldn't find the string 'SIMPLE' in the stdin stream.");
           ffpmsg("This does not look like a FITS file.");
           return(FILE_NOT_OPENED);
       }
    
        /* fill up the remainder of the initial memory allocation */
        nread = fread(memptr + 6, 1, memsize - 6, stdin);
        nread += 6;  /* add in the 6 characters in 'SIMPLE' */
    
        if (nread < memsize)    /* reached the end? */
        {
           memTable[hd].fitsfilesize = nread;
           return(0);
        }
    
        filesize = nread;
    
        while (1)
        {
            /* allocate memory for another FITS block */
            memptr = realloc(memptr, memsize + delta);
    
            if (!memptr)
            {
                ffpmsg("realloc failed while copying stdin (stdin2mem)");
                return(MEMORY_ALLOCATION);
            }
            memsize += delta;
    
            /* read another FITS block */
            nread = fread(memptr + filesize, 1, delta, stdin);
    
            filesize += nread;
    
            if (nread < delta)    /* reached the end? */
               break;
        }
    
         memTable[hd].fitsfilesize = filesize;
        *memTable[hd].memaddrptr = memptr;
        *memTable[hd].memsizeptr = memsize;
    
        return(0);
    }
    /*--------------------------------------------------------------------------*/
    int stdin2file(int handle)  /* handle number */
    /*
      Copy the stdin stream to a file.  .
    */
    {
        size_t nread;
        char simple[] = "SIMPLE";
        int c, ii, jj, status;
        char recbuf[RECBUFLEN];
    
        ii = 0;
        for(jj = 0; (c = fgetc(stdin)) != EOF && jj < 2000; jj++)
        {
           /* Skip over any garbage at the beginning of the stdin stream by */
           /* reading 1 char at a time, looking for 'S', 'I', 'M', 'P', 'L', 'E' */
           /* Give up if not found in the first 2000 characters */
    
           if (c == simple[ii])
           {
               ii++;
               if (ii == 6)   /* found the complete string? */
               {
                  memcpy(recbuf, simple, 6);  /* copy "SIMPLE" to buffer */
                  break;
               }
           }
           else
              ii = 0;  /* reset search to beginning of the string */
        }
    
       if (ii != 6)
       {
           ffpmsg("Couldn't find the string 'SIMPLE' in the stdin stream");
           return(FILE_NOT_OPENED);
       }
    
        /* fill up the remainder of the buffer */
        nread = fread(recbuf + 6, 1, RECBUFLEN - 6, stdin);
        nread += 6;  /* add in the 6 characters in 'SIMPLE' */
    
        status = file_write(handle, recbuf, nread);
        if (status)
           return(status);
    
        /* copy the rest of stdin stream */
        while(0 != (nread = fread(recbuf,1,RECBUFLEN, stdin)))
        {
            status = file_write(handle, recbuf, nread);
            if (status)
               return(status);
        }
    
        return(status);
    }
    /*--------------------------------------------------------------------------*/
    int stdout_close(int handle)
    /*
      copy the memory file to stdout, then free the memory
    */
    {
        int status = 0;
    
        /* copy from memory to standard out.  explicit LONGLONG->size_t cast */
        if(fwrite(memTable[handle].memaddr, 1,
                  ((size_t) memTable[handle].fitsfilesize), stdout) !=
                  (size_t) memTable[handle].fitsfilesize )
        {
                    ffpmsg("failed to copy memory file to stdout (stdout_close)");
                    status = WRITE_ERROR;
        }
    
        free( memTable[handle].memaddr );   /* free the memory */
        memTable[handle].memaddrptr = 0;
        memTable[handle].memaddr = 0;
        return(status);
    }
    /*--------------------------------------------------------------------------*/
    int mem_compress_openrw(char *filename, int rwmode, int *hdl)
    /*
      This routine opens the compressed diskfile and creates an empty memory
      buffer with an appropriate size, then calls mem_uncompress2mem. It allows
      the memory 'file' to be opened with READWRITE access.
    */
    {
       return(mem_compress_open(filename, READONLY, hdl));  
    }
    /*--------------------------------------------------------------------------*/
    int mem_compress_open(char *filename, int rwmode, int *hdl)
    /*
      This routine opens the compressed diskfile and creates an empty memory
      buffer with an appropriate size, then calls mem_uncompress2mem.
    */
    {
        FILE *diskfile;
        int status, estimated = 1;
        unsigned char buffer[4];
        size_t finalsize, filesize;
        LONGLONG llsize = 0;
        unsigned int modulosize;
        char *ptr;
    
        if (rwmode != READONLY)
        {
            ffpmsg(
      "cannot open compressed file with WRITE access (mem_compress_open)");
            ffpmsg(filename);
            return(READONLY_FILE);
        }
    
        /* open the compressed disk file */
        status = file_openfile(filename, READONLY, &diskfile);
        if (status)
        {
            ffpmsg("failed to open compressed disk file (compress_open)");
            ffpmsg(filename);
            return(status);
        }
    
        if (fread(buffer, 1, 2, diskfile) != 2)  /* read 2 bytes */
        {
            fclose(diskfile);
            return(READ_ERROR);
        }
    
        if (memcmp(buffer, "\037\213", 2) == 0)  /* GZIP */
        {
            /* the uncompressed file size is give at the end */
            /* of the file in the ISIZE field  (modulo 2^32) */
    
            fseek(diskfile, 0, 2);            /* move to end of file */
            filesize = ftell(diskfile);       /* position = size of file */
            fseek(diskfile, -4L, 1);          /* move back 4 bytes */
            fread(buffer, 1, 4L, diskfile);   /* read 4 bytes */
    
            /* have to worry about integer byte order */
    	modulosize  = buffer[0];
    	modulosize |= buffer[1] << 8;
    	modulosize |= buffer[2] << 16;
    	modulosize |= buffer[3] << 24;
    
    /*
      the field ISIZE in the gzipped file header only stores 4 bytes and contains
      the uncompressed file size modulo 2^32.  If the uncompressed file size
      is less than the compressed file size (filesize), then one probably needs to
      add 2^32 = 4294967296 to the uncompressed file size, assuming that the gzip
      produces a compressed file that is smaller than the original file.
    
      But one must allow for the case of very small files, where the
      gzipped file may actually be larger then the original uncompressed file.
      Therefore, only perform the modulo 2^32 correction test if the compressed 
      file is greater than 10,000 bytes in size.  (Note: this threhold would
      fail only if the original file was greater than 2^32 bytes in size AND gzip 
      was able to compress it by more than a factor of 400,000 (!) which seems
      highly unlikely.)
      
      Also, obviously, this 2^32 modulo correction cannot be performed if the
      finalsize variable is only 32-bits long.  Typically, the 'size_t' integer
      type must be 8 bytes or larger in size to support data files that are 
      greater than 2 GB (2^31 bytes) in size.  
    */
            finalsize = modulosize;
    
            if (sizeof(size_t) > 4 && filesize > 10000) {
    	    llsize = (LONGLONG) finalsize;  
    	    /* use LONGLONG variable to suppress compiler warning */
                while (llsize <  (LONGLONG) filesize) llsize += 4294967296;
    
                finalsize = (size_t) llsize;
            }
    
            estimated = 0;  /* file size is known, not estimated */
        }
        else if (memcmp(buffer, "\120\113", 2) == 0)   /* PKZIP */
        {
            /* the uncompressed file size is give at byte 22 the file */
    
            fseek(diskfile, 22L, 0);            /* move to byte 22 */
            fread(buffer, 1, 4L, diskfile);   /* read 4 bytes */
    
            /* have to worry about integer byte order */
    	modulosize  = buffer[0];
    	modulosize |= buffer[1] << 8;
    	modulosize |= buffer[2] << 16;
    	modulosize |= buffer[3] << 24;
            finalsize = modulosize;
    
            estimated = 0;  /* file size is known, not estimated */
        }
        else if (memcmp(buffer, "\037\036", 2) == 0)  /* PACK */
            finalsize = 0;  /* for most methods we can't determine final size */
        else if (memcmp(buffer, "\037\235", 2) == 0)  /* LZW */
            finalsize = 0;  /* for most methods we can't determine final size */
        else if (memcmp(buffer, "\037\240", 2) == 0)  /* LZH */
            finalsize = 0;  /* for most methods we can't determine final size */
        else
        {
            /* not a compressed file; this should never happen */
            fclose(diskfile);
            return(1);
        }
    
        if (finalsize == 0)  /* estimate uncompressed file size */
        {
                fseek(diskfile, 0, 2);   /* move to end of the compressed file */
                finalsize = ftell(diskfile);  /* position = size of file */
                finalsize = finalsize * 3;   /* assume factor of 3 compression */
        }
    
        fseek(diskfile, 0, 0);   /* move back to beginning of file */
    
        /* create a memory file big enough (hopefully) for the uncompressed file */
        status = mem_createmem(finalsize, hdl);
    
        if (status && estimated)
        {
            /* memory allocation failed, so try a smaller estimated size */
            finalsize = finalsize / 3;
            status = mem_createmem(finalsize, hdl);
        }
    
        if (status)
        {
            fclose(diskfile);
            ffpmsg("failed to create empty memory file (compress_open)");
            return(status);
        }
    
        /* uncompress file into memory */
        status = mem_uncompress2mem(filename, diskfile, *hdl);
    
        fclose(diskfile);
    
        if (status)
        {
            mem_close_free(*hdl);   /* free up the memory */
            ffpmsg("failed to uncompress file into memory (compress_open)");
            return(status);
        }
    
        /* if we allocated too much memory initially, then free it */
        if (*(memTable[*hdl].memsizeptr) > 
           (( (size_t) memTable[*hdl].fitsfilesize) + 256L) ) 
        {
            ptr = realloc(*(memTable[*hdl].memaddrptr), 
                         ((size_t) memTable[*hdl].fitsfilesize) );
            if (!ptr)
            {
                ffpmsg("Failed to reduce size of allocated memory (compress_open)");
                return(MEMORY_ALLOCATION);
            }
    
            *(memTable[*hdl].memaddrptr) = ptr;
            *(memTable[*hdl].memsizeptr) = (size_t) (memTable[*hdl].fitsfilesize);
        }
    
        return(0);
    }
    /*--------------------------------------------------------------------------*/
    int mem_compress_stdin_open(char *filename, int rwmode, int *hdl)
    /*
      This routine reads the compressed input stream and creates an empty memory
      buffer, then calls mem_uncompress2mem.
    */
    {
        int status;
        char *ptr;
    
        if (rwmode != READONLY)
        {
            ffpmsg(
      "cannot open compressed input stream with WRITE access (mem_compress_stdin_open)");
            return(READONLY_FILE);
        }
     
        /* create a memory file for the uncompressed file */
        status = mem_createmem(28800, hdl);
    
        if (status)
        {
            ffpmsg("failed to create empty memory file (compress_stdin_open)");
            return(status);
        }
    
        /* uncompress file into memory */
        status = mem_uncompress2mem(filename, stdin, *hdl);
    
        if (status)
        {
            mem_close_free(*hdl);   /* free up the memory */
            ffpmsg("failed to uncompress stdin into memory (compress_stdin_open)");
            return(status);
        }
    
        /* if we allocated too much memory initially, then free it */
        if (*(memTable[*hdl].memsizeptr) > 
           (( (size_t) memTable[*hdl].fitsfilesize) + 256L) ) 
        {
            ptr = realloc(*(memTable[*hdl].memaddrptr), 
                          ((size_t) memTable[*hdl].fitsfilesize) );
            if (!ptr)
            {
                ffpmsg("Failed to reduce size of allocated memory (compress_stdin_open)");
                return(MEMORY_ALLOCATION);
            }
    
            *(memTable[*hdl].memaddrptr) = ptr;
            *(memTable[*hdl].memsizeptr) = (size_t) (memTable[*hdl].fitsfilesize);
        }
    
        return(0);
    }
    /*--------------------------------------------------------------------------*/
    int mem_iraf_open(char *filename, int rwmode, int *hdl)
    /*
      This routine creates an empty memory buffer, then calls iraf2mem to
      open the IRAF disk file and convert it to a FITS file in memeory.
    */
    {
        int status;
        size_t filesize = 0;
    
        /* create a memory file with size = 0 for the FITS converted IRAF file */
        status = mem_createmem(filesize, hdl);
        if (status)
        {
            ffpmsg("failed to create empty memory file (mem_iraf_open)");
            return(status);
        }
    
        /* convert the iraf file into a FITS file in memory */
        status = iraf2mem(filename, memTable[*hdl].memaddrptr,
                          memTable[*hdl].memsizeptr, &filesize, &status);
    
        if (status)
        {
            mem_close_free(*hdl);   /* free up the memory */
            ffpmsg("failed to convert IRAF file into memory (mem_iraf_open)");
            return(status);
        }
    
        memTable[*hdl].currentpos = 0;           /* save starting position */
        memTable[*hdl].fitsfilesize=filesize;   /* and initial file size  */
    
        return(0);
    }
    /*--------------------------------------------------------------------------*/
    int mem_rawfile_open(char *filename, int rwmode, int *hdl)
    /*
      This routine creates an empty memory buffer, writes a minimal
      image header, then copies the image data from the raw file into
      memory.  It will byteswap the pixel values if the raw array
      is in little endian byte order.
    */
    {
        FILE *diskfile;
        fitsfile *fptr;
        short *sptr;
        int status, endian, datatype, bytePerPix, naxis;
        long dim[5] = {1,1,1,1,1}, ii, nvals, offset = 0;
        size_t filesize = 0, datasize;
        char rootfile[FLEN_FILENAME], *cptr = 0, *cptr2 = 0;
        void *ptr;
    
        if (rwmode != READONLY)
        {
            ffpmsg(
      "cannot open raw binary file with WRITE access (mem_rawfile_open)");
            ffpmsg(filename);
            return(READONLY_FILE);
        }
    
        cptr = strchr(filename, '[');   /* search for opening bracket [ */
    
        if (!cptr)
        {
            ffpmsg("binary file name missing '[' character (mem_rawfile_open)");
            ffpmsg(filename);
            return(URL_PARSE_ERROR);
        }
    
        *rootfile = '\0';
        strncat(rootfile, filename, cptr - filename);  /* store the rootname */
    
        cptr++;
    
        while (*cptr == ' ')
           cptr++;    /* skip leading blanks */
    
        /* Get the Data Type of the Image */
    
        if (*cptr == 'b' || *cptr == 'B')
        {
          datatype = BYTE_IMG;
          bytePerPix = 1;
        }
        else if (*cptr == 'i' || *cptr == 'I')
        {
          datatype = SHORT_IMG;
          bytePerPix = 2;
        }
        else if (*cptr == 'u' || *cptr == 'U')
        {
          datatype = USHORT_IMG;
          bytePerPix = 2;
    
        }
        else if (*cptr == 'j' || *cptr == 'J')
        {
          datatype = LONG_IMG;
          bytePerPix = 4;
        }  
        else if (*cptr == 'r' || *cptr == 'R' || *cptr == 'f' || *cptr == 'F')
        {
          datatype = FLOAT_IMG;
          bytePerPix = 4;
        }    
        else if (*cptr == 'd' || *cptr == 'D')
        {
          datatype = DOUBLE_IMG;
          bytePerPix = 8;
        }
        else
        {
            ffpmsg("error in raw binary file datatype (mem_rawfile_open)");
            ffpmsg(filename);
            return(URL_PARSE_ERROR);
        }
    
        cptr++;
    
        /* get Endian: Big or Little; default is same as the local machine */
        
        if (*cptr == 'b' || *cptr == 'B')
        {
            endian = 0;
            cptr++;
        }
        else if (*cptr == 'l' || *cptr == 'L')
        {
            endian = 1;
            cptr++;
        }
        else
            endian = BYTESWAPPED; /* byteswapped machines are little endian */
    
        /* read each dimension (up to 5) */
    
        naxis = 1;
        dim[0] = strtol(cptr, &cptr2, 10);
        
        if (cptr2 && *cptr2 == ',')
        {
          naxis = 2;
          dim[1] = strtol(cptr2+1, &cptr, 10);
    
          if (cptr && *cptr == ',')
          {
            naxis = 3;
            dim[2] = strtol(cptr+1, &cptr2, 10);
    
            if (cptr2 && *cptr2 == ',')
            {
              naxis = 4;
              dim[3] = strtol(cptr2+1, &cptr, 10);
    
              if (cptr && *cptr == ',')
                naxis = 5;
                dim[4] = strtol(cptr+1, &cptr2, 10);
            }
          }
        }
    
        cptr = maxvalue(cptr, cptr2);
    
        if (*cptr == ':')   /* read starting offset value */
            offset = strtol(cptr+1, 0, 10);
    
        nvals = dim[0] * dim[1] * dim[2] * dim[3] * dim[4];
        datasize = nvals * bytePerPix;
        filesize = nvals * bytePerPix + 2880;
        filesize = ((filesize - 1) / 2880 + 1) * 2880; 
    
        /* open the raw binary disk file */
        status = file_openfile(rootfile, READONLY, &diskfile);
        if (status)
        {
            ffpmsg("failed to open raw  binary file (mem_rawfile_open)");
            ffpmsg(rootfile);
            return(status);
        }
    
        /* create a memory file with corrct size for the FITS converted raw file */
        status = mem_createmem(filesize, hdl);
        if (status)
        {
            ffpmsg("failed to create memory file (mem_rawfile_open)");
            fclose(diskfile);
            return(status);
        }
    
        /* open this piece of memory as a new FITS file */
        ffimem(&fptr, (void **) memTable[*hdl].memaddrptr, &filesize, 0, 0, &status);
    
        /* write the required header keywords */
        ffcrim(fptr, datatype, naxis, dim, &status);
    
        /* close the FITS file, but keep the memory allocated */
        ffclos(fptr, &status);
    
        if (status > 0)
        {
            ffpmsg("failed to write basic image header (mem_rawfile_open)");
            fclose(diskfile);
            mem_close_free(*hdl);   /* free up the memory */
            return(status);
        }
    
        if (offset > 0)
           fseek(diskfile, offset, 0);   /* offset to start of the data */
    
        /* read the raw data into memory */
        ptr = *memTable[*hdl].memaddrptr + 2880;
    
        if (fread((char *) ptr, 1, datasize, diskfile) != datasize)
          status = READ_ERROR;
    
        fclose(diskfile);  /* close the raw binary disk file */
    
        if (status)
        {
            mem_close_free(*hdl);   /* free up the memory */
            ffpmsg("failed to copy raw file data into memory (mem_rawfile_open)");
            return(status);
        }
    
        if (datatype == USHORT_IMG)  /* have to subtract 32768 from each unsigned */
        {                            /* value to conform to FITS convention. More */
                                     /* efficient way to do this is to just flip  */
                                     /* the most significant bit.                 */
    
          sptr = (short *) ptr;
    
          if (endian == BYTESWAPPED)  /* working with native format */
          {
            for (ii = 0; ii < nvals; ii++, sptr++)
            {
              *sptr =  ( *sptr ) ^ 0x8000;
            }
          }
          else  /* pixels are byteswapped WRT the native format */
          {
            for (ii = 0; ii < nvals; ii++, sptr++)
            {
              *sptr =  ( *sptr ) ^ 0x80;
            }
          }
        }
    
        if (endian)  /* swap the bytes if array is in little endian byte order */
        {
          if (datatype == SHORT_IMG || datatype == USHORT_IMG)
          {
            ffswap2( (short *) ptr, nvals);
          }
          else if (datatype == LONG_IMG || datatype == FLOAT_IMG)
          {
            ffswap4( (INT32BIT *) ptr, nvals);
          }
    
          else if (datatype == DOUBLE_IMG)
          {
            ffswap8( (double *) ptr, nvals);
          }
        }
    
        memTable[*hdl].currentpos = 0;           /* save starting position */
        memTable[*hdl].fitsfilesize=filesize;    /* and initial file size  */
    
        return(0);
    }
    /*--------------------------------------------------------------------------*/
    int mem_uncompress2mem(char *filename, FILE *diskfile, int hdl)
    {
    /*
      lower level routine to uncompress a file into memory.  The file
      has already been opened and the memory buffer has been allocated.
    */
    
      size_t finalsize;
      int status;
      /* uncompress file into memory */
      status = 0;
    
        if (strstr(filename, ".Z")) {
             zuncompress2mem(filename, diskfile,
    		 memTable[hdl].memaddrptr,   /* pointer to memory address */
    		 memTable[hdl].memsizeptr,   /* pointer to size of memory */
    		 realloc,                     /* reallocation function */
    		 &finalsize, &status);        /* returned file size nd status*/
        } else {
             uncompress2mem(filename, diskfile,
    		 memTable[hdl].memaddrptr,   /* pointer to memory address */
    		 memTable[hdl].memsizeptr,   /* pointer to size of memory */
    		 realloc,                     /* reallocation function */
    		 &finalsize, &status);        /* returned file size nd status*/
        } 
    
      memTable[hdl].currentpos = 0;           /* save starting position */
      memTable[hdl].fitsfilesize=finalsize;   /* and initial file size  */
      return status;
    }
    /*--------------------------------------------------------------------------*/
    int mem_size(int handle, LONGLONG *filesize)
    /*
      return the size of the file; only called when the file is first opened
    */
    {
        *filesize = memTable[handle].fitsfilesize;
        return(0);
    }
    /*--------------------------------------------------------------------------*/
    int mem_close_free(int handle)
    /*
      close the file and free the memory.
    */
    {
        free( *(memTable[handle].memaddrptr) );
    
        memTable[handle].memaddrptr = 0;
        memTable[handle].memaddr = 0;
        return(0);
    }
    /*--------------------------------------------------------------------------*/
    int mem_close_keep(int handle)
    /*
      close the memory file but do not free the memory.
    */
    {
        memTable[handle].memaddrptr = 0;
        memTable[handle].memaddr = 0;
        return(0);
    }
    /*--------------------------------------------------------------------------*/
    int mem_close_comp(int handle)
    /*
      compress the memory file, writing it out to the fileptr (which might
      be stdout)
    */
    {
        int status = 0;
        size_t compsize;
    
        /* compress file in  memory to a .gz disk file */
    
        if(compress2file_from_mem(memTable[handle].memaddr,
                  (size_t) (memTable[handle].fitsfilesize), 
                  memTable[handle].fileptr,
                  &compsize, &status ) )
        {
                ffpmsg("failed to copy memory file to file (mem_close_comp)");
                status = WRITE_ERROR;
        }
    
        free( memTable[handle].memaddr );   /* free the memory */
        memTable[handle].memaddrptr = 0;
        memTable[handle].memaddr = 0;
    
        /* close the compressed disk file (except if it is 'stdout' */
        if (memTable[handle].fileptr != stdout)
            fclose(memTable[handle].fileptr);
    
        return(status);
    }
    /*--------------------------------------------------------------------------*/
    int mem_seek(int handle, LONGLONG offset)
    /*
      seek to position relative to start of the file.
    */
    {
        if (offset >  memTable[handle].fitsfilesize )
            return(END_OF_FILE);
    
        memTable[handle].currentpos = offset;
        return(0);
    }
    /*--------------------------------------------------------------------------*/
    int mem_read(int hdl, void *buffer, long nbytes)
    /*
      read bytes from the current position in the file
    */
    {
        if (memTable[hdl].currentpos + nbytes > memTable[hdl].fitsfilesize)
            return(END_OF_FILE);
    
        memcpy(buffer,
               *(memTable[hdl].memaddrptr) + memTable[hdl].currentpos,
               nbytes);
    
        memTable[hdl].currentpos += nbytes;
        return(0);
    }
    /*--------------------------------------------------------------------------*/
    int mem_write(int hdl, void *buffer, long nbytes)
    /*
      write bytes at the current position in the file
    */
    {
        size_t newsize;
        char *ptr;
    
        if ((size_t) (memTable[hdl].currentpos + nbytes) > 
             *(memTable[hdl].memsizeptr) )
        {
                   
            if (!(memTable[hdl].mem_realloc))
            {
                ffpmsg("realloc function not defined (mem_write)");
                return(WRITE_ERROR);
            }
    
            /*
              Attempt to reallocate additional memory:
              the memory buffer size is incremented by the larger of:
                 1 FITS block (2880 bytes) or
                 the defined 'deltasize' parameter
             */
    
            newsize = maxvalue( (size_t)
                (((memTable[hdl].currentpos + nbytes - 1) / 2880) + 1) * 2880,
                *(memTable[hdl].memsizeptr) + memTable[hdl].deltasize);
    
            /* call the realloc function */
            ptr = (memTable[hdl].mem_realloc)(
                                        *(memTable[hdl].memaddrptr),
                                         newsize);
            if (!ptr)
            {
                ffpmsg("Failed to reallocate memory (mem_write)");
                return(MEMORY_ALLOCATION);
            }
    
            *(memTable[hdl].memaddrptr) = ptr;
            *(memTable[hdl].memsizeptr) = newsize;
        }
    
        /* now copy the bytes from the buffer into memory */
        memcpy( *(memTable[hdl].memaddrptr) + memTable[hdl].currentpos,
                 buffer,
                 nbytes);
    
        memTable[hdl].currentpos += nbytes;
        memTable[hdl].fitsfilesize =
                   maxvalue(memTable[hdl].fitsfilesize,
                            memTable[hdl].currentpos);
        return(0);
    }
    healpy-1.8.1/cfitsio/wcsutil.c0000654000175000017530000004060112272000775016714 0ustar  zoncaplanck00000000000000#include 
    #include "fitsio2.h"
    #define D2R 0.01745329252
    #define TWOPI 6.28318530717959
    
    /*--------------------------------------------------------------------------*/
    int ffwldp(double xpix, double ypix, double xref, double yref,
          double xrefpix, double yrefpix, double xinc, double yinc, double rot,
          char *type, double *xpos, double *ypos, int *status)
    
    /* This routine is based on the classic AIPS WCS routine. 
    
       It converts from pixel location to RA,Dec for 9 projective geometries:
       "-CAR", "-SIN", "-TAN", "-ARC", "-NCP", "-GLS", "-MER", "-AIT" and "-STG".
    */
    
    /*-----------------------------------------------------------------------*/
    /* routine to determine accurate position for pixel coordinates          */
    /* returns 0 if successful otherwise:                                    */
    /* 501 = angle too large for projection;                                 */
    /* does: -CAR, -SIN, -TAN, -ARC, -NCP, -GLS, -MER, -AIT  -STG projections*/
    /* Input:                                                                */
    /*   f   xpix    x pixel number  (RA or long without rotation)           */
    /*   f   ypiy    y pixel number  (dec or lat without rotation)           */
    /*   d   xref    x reference coordinate value (deg)                      */
    /*   d   yref    y reference coordinate value (deg)                      */
    /*   f   xrefpix x reference pixel                                       */
    /*   f   yrefpix y reference pixel                                       */
    /*   f   xinc    x coordinate increment (deg)                            */
    /*   f   yinc    y coordinate increment (deg)                            */
    /*   f   rot     rotation (deg)  (from N through E)                      */
    /*   c  *type    projection type code e.g. "-SIN";                       */
    /* Output:                                                               */
    /*   d   *xpos   x (RA) coordinate (deg)                                 */
    /*   d   *ypos   y (dec) coordinate (deg)                                */
    /*-----------------------------------------------------------------------*/
     {double cosr, sinr, dx, dy, dz, temp, x, y, z;
      double sins, coss, dect, rat, dt, l, m, mg, da, dd, cos0, sin0;
      double dec0, ra0;
      double geo1, geo2, geo3;
      double deps = 1.0e-5;
      char *cptr;
      
      if (*status > 0)
         return(*status);
    
    /*   Offset from ref pixel  */
      dx = (xpix-xrefpix) * xinc;
      dy = (ypix-yrefpix) * yinc;
    
    /*   Take out rotation  */
      cosr = cos(rot * D2R);
      sinr = sin(rot * D2R);
      if (rot != 0.0) {
         temp = dx * cosr - dy * sinr;
         dy = dy * cosr + dx * sinr;
         dx = temp;
      }
    
    /* convert to radians  */
      ra0 = xref * D2R;
      dec0 = yref * D2R;
    
      l = dx * D2R;
      m = dy * D2R;
      sins = l*l + m*m;
      cos0 = cos(dec0);
      sin0 = sin(dec0);
    
      if (*type != '-') {  /* unrecognized projection code */
         return(*status = 504);
      }
    
        cptr = type + 1;
    
        if (*cptr == 'C') { /* linear -CAR */
          if (*(cptr + 1) != 'A' ||  *(cptr + 2) != 'R') {
             return(*status = 504);
          }
          rat =  ra0 + l;
          dect = dec0 + m;
    
        } else if (*cptr == 'T') {  /* -TAN */
          if (*(cptr + 1) != 'A' ||  *(cptr + 2) != 'N') {
             return(*status = 504);
          }
          x = cos0*cos(ra0) - l*sin(ra0) - m*cos(ra0)*sin0;
          y = cos0*sin(ra0) + l*cos(ra0) - m*sin(ra0)*sin0;
          z = sin0                       + m*         cos0;
          rat  = atan2( y, x );
          dect = atan ( z / sqrt(x*x+y*y) );
    
        } else if (*cptr == 'S') {
    
          if (*(cptr + 1) == 'I' &&  *(cptr + 2) == 'N') { /* -SIN */
              if (sins>1.0)
    	    return(*status = 501);
              coss = sqrt (1.0 - sins);
              dt = sin0 * coss + cos0 * m;
              if ((dt>1.0) || (dt<-1.0))
    	    return(*status = 501);
              dect = asin (dt);
              rat = cos0 * coss - sin0 * m;
              if ((rat==0.0) && (l==0.0))
    	    return(*status = 501);
              rat = atan2 (l, rat) + ra0;
    
           } else if (*(cptr + 1) == 'T' &&  *(cptr + 2) == 'G') {  /* -STG Sterographic*/
              dz = (4.0 - sins) / (4.0 + sins);
              if (fabs(dz)>1.0)
    	    return(*status = 501);
              dect = dz * sin0 + m * cos0 * (1.0+dz) / 2.0;
              if (fabs(dect)>1.0)
    	    return(*status = 501);
              dect = asin (dect);
              rat = cos(dect);
              if (fabs(rat)1.0)
    	    return(*status = 501);
              rat = asin (rat);
              mg = 1.0 + sin(dect) * sin0 + cos(dect) * cos0 * cos(rat);
              if (fabs(mg)deps)
    	    rat = TWOPI /2.0 - rat;
              rat = ra0 + rat;
            } else  {
              return(*status = 504);
            }
     
        } else if (*cptr == 'A') {
    
          if (*(cptr + 1) == 'R' &&  *(cptr + 2) == 'C') { /* ARC */
              if (sins>=TWOPI*TWOPI/4.0)
    	    return(*status = 501);
              sins = sqrt(sins);
              coss = cos (sins);
              if (sins!=0.0)
    	    sins = sin (sins) / sins;
              else
    	    sins = 1.0;
              dt = m * cos0 * sins + sin0 * coss;
              if ((dt>1.0) || (dt<-1.0))
    	    return(*status = 501);
              dect = asin (dt);
              da = coss - dt * sin0;
              dt = l * sins * cos0;
              if ((da==0.0) && (dt==0.0))
    	    return(*status = 501);
              rat = ra0 + atan2 (dt, da);
    
          } else if (*(cptr + 1) == 'I' &&  *(cptr + 2) == 'T') {  /* -AIT Aitoff */
              dt = yinc*cosr + xinc*sinr;
              if (dt==0.0)
    	    dt = 1.0;
              dt = dt * D2R;
              dy = yref * D2R;
              dx = sin(dy+dt)/sqrt((1.0+cos(dy+dt))/2.0) -
    	      sin(dy)/sqrt((1.0+cos(dy))/2.0);
              if (dx==0.0)
    	    dx = 1.0;
              geo2 = dt / dx;
              dt = xinc*cosr - yinc* sinr;
              if (dt==0.0)
    	    dt = 1.0;
              dt = dt * D2R;
              dx = 2.0 * cos(dy) * sin(dt/2.0);
              if (dx==0.0) dx = 1.0;
              geo1 = dt * sqrt((1.0+cos(dy)*cos(dt/2.0))/2.0) / dx;
              geo3 = geo2 * sin(dy) / sqrt((1.0+cos(dy))/2.0);
              rat = ra0;
              dect = dec0;
              if ((l != 0.0) || (m != 0.0)) {
                dz = 4.0 - l*l/(4.0*geo1*geo1) - ((m+geo3)/geo2)*((m+geo3)/geo2) ;
                if ((dz>4.0) || (dz<2.0)) return(*status = 501);
                dz = 0.5 * sqrt (dz);
                dd = (m+geo3) * dz / geo2;
                if (fabs(dd)>1.0) return(*status = 501);
                dd = asin (dd);
                if (fabs(cos(dd))1.0) return(*status = 501);
                da = asin (da);
                rat = ra0 + 2.0 * da;
                dect = dd;
              }
            } else  {
              return(*status = 504);
            }
     
        } else if (*cptr == 'N') { /* -NCP North celestial pole*/
          if (*(cptr + 1) != 'C' ||  *(cptr + 2) != 'P') {
             return(*status = 504);
          }
          dect = cos0 - m * sin0;
          if (dect==0.0)
            return(*status = 501);
          rat = ra0 + atan2 (l, dect);
          dt = cos (rat-ra0);
          if (dt==0.0)
            return(*status = 501);
          dect = dect / dt;
          if ((dect>1.0) || (dect<-1.0))
            return(*status = 501);
          dect = acos (dect);
          if (dec0<0.0) dect = -dect;
    
        } else if (*cptr == 'G') {   /* -GLS global sinusoid */
          if (*(cptr + 1) != 'L' ||  *(cptr + 2) != 'S') {
             return(*status = 504);
          }
          dect = dec0 + m;
          if (fabs(dect)>TWOPI/4.0)
            return(*status = 501);
          coss = cos (dect);
          if (fabs(l)>TWOPI*coss/2.0)
            return(*status = 501);
          rat = ra0;
          if (coss>deps) rat = rat + l / coss;
    
        } else if (*cptr == 'M') {  /* -MER mercator*/
          if (*(cptr + 1) != 'E' ||  *(cptr + 2) != 'R') {
             return(*status = 504);
          }
          dt = yinc * cosr + xinc * sinr;
          if (dt==0.0) dt = 1.0;
          dy = (yref/2.0 + 45.0) * D2R;
          dx = dy + dt / 2.0 * D2R;
          dy = log (tan (dy));
          dx = log (tan (dx));
          geo2 = dt * D2R / (dx - dy);
          geo3 = geo2 * dy;
          geo1 = cos (yref*D2R);
          if (geo1<=0.0) geo1 = 1.0;
          rat = l / geo1 + ra0;
          if (fabs(rat - ra0) > TWOPI)
            return(*status = 501);
          dt = 0.0;
          if (geo2!=0.0) dt = (m + geo3) / geo2;
          dt = exp (dt);
          dect = 2.0 * atan (dt) - TWOPI / 4.0;
    
        } else  {
          return(*status = 504);
        }
    
      /*  correct for RA rollover  */
      if (rat-ra0>TWOPI/2.0) rat = rat - TWOPI;
      if (rat-ra0<-TWOPI/2.0) rat = rat + TWOPI;
      if (rat < 0.0) rat += TWOPI;
    
      /*  convert to degrees  */
      *xpos  = rat  / D2R;
      *ypos  = dect  / D2R;
      return(*status);
    } 
    /*--------------------------------------------------------------------------*/
    int ffxypx(double xpos, double ypos, double xref, double yref, 
          double xrefpix, double yrefpix, double xinc, double yinc, double rot,
          char *type, double *xpix, double *ypix, int *status)
    
    /* This routine is based on the classic AIPS WCS routine. 
    
       It converts from RA,Dec to pixel location to for 9 projective geometries:
       "-CAR", "-SIN", "-TAN", "-ARC", "-NCP", "-GLS", "-MER", "-AIT" and "-STG".
    */
    /*-----------------------------------------------------------------------*/
    /* routine to determine accurate pixel coordinates for an RA and Dec     */
    /* returns 0 if successful otherwise:                                    */
    /* 501 = angle too large for projection;                                 */
    /* 502 = bad values                                                      */
    /* does: -SIN, -TAN, -ARC, -NCP, -GLS, -MER, -AIT projections            */
    /* anything else is linear                                               */
    /* Input:                                                                */
    /*   d   xpos    x (RA) coordinate (deg)                                 */
    /*   d   ypos    y (dec) coordinate (deg)                                */
    /*   d   xref    x reference coordinate value (deg)                      */
    /*   d   yref    y reference coordinate value (deg)                      */
    /*   f   xrefpix x reference pixel                                       */
    /*   f   yrefpix y reference pixel                                       */
    /*   f   xinc    x coordinate increment (deg)                            */
    /*   f   yinc    y coordinate increment (deg)                            */
    /*   f   rot     rotation (deg)  (from N through E)                      */
    /*   c  *type    projection type code e.g. "-SIN";                       */
    /* Output:                                                               */
    /*   f  *xpix    x pixel number  (RA or long without rotation)           */
    /*   f  *ypiy    y pixel number  (dec or lat without rotation)           */
    /*-----------------------------------------------------------------------*/
     {
      double dx, dy, dz, r, ra0, dec0, ra, dec, coss, sins, dt, da, dd, sint;
      double l, m, geo1, geo2, geo3, sinr, cosr, cos0, sin0;
      double deps=1.0e-5;
      char *cptr;
    
      if (*type != '-') {  /* unrecognized projection code */
         return(*status = 504);
      }
    
      cptr = type + 1;
    
      dt = (xpos - xref);
      if (dt >  180) xpos -= 360;
      if (dt < -180) xpos += 360;
      /* NOTE: changing input argument xpos is OK (call-by-value in C!) */
    
      /* default values - linear */
      dx = xpos - xref;
      dy = ypos - yref;
    
      /*  Correct for rotation */
      r = rot * D2R;
      cosr = cos (r);
      sinr = sin (r);
      dz = dx*cosr + dy*sinr;
      dy = dy*cosr - dx*sinr;
      dx = dz;
    
      /*     check axis increments - bail out if either 0 */
      if ((xinc==0.0) || (yinc==0.0)) {*xpix=0.0; *ypix=0.0;
        return(*status = 502);}
    
      /*     convert to pixels  */
      *xpix = dx / xinc + xrefpix;
      *ypix = dy / yinc + yrefpix;
    
      if (*cptr == 'C') { /* linear -CAR */
          if (*(cptr + 1) != 'A' ||  *(cptr + 2) != 'R') {
             return(*status = 504);
          }
    
          return(*status);  /* done if linear */
      }
    
      /* Non linear position */
      ra0 = xref * D2R;
      dec0 = yref * D2R;
      ra = xpos * D2R;
      dec = ypos * D2R;
    
      /* compute direction cosine */
      coss = cos (dec);
      sins = sin (dec);
      cos0 = cos (dec0);
      sin0 = sin (dec0);
      l = sin(ra-ra0) * coss;
      sint = sins * sin0 + coss * cos0 * cos(ra-ra0);
    
        /* process by case  */
        if (*cptr == 'T') {  /* -TAN tan */
             if (*(cptr + 1) != 'A' ||  *(cptr + 2) != 'N') {
               return(*status = 504);
             }
    
             if (sint<=0.0)
    	   return(*status = 501);
             if( cos0<0.001 ) {
                /* Do a first order expansion around pole */
                m = (coss * cos(ra-ra0)) / (sins * sin0);
                m = (-m + cos0 * (1.0 + m*m)) / sin0;
             } else {
                m = ( sins/sint - sin0 ) / cos0;
             }
    	 if( fabs(sin(ra0)) < 0.3 ) {
    	    l  = coss*sin(ra)/sint - cos0*sin(ra0) + m*sin(ra0)*sin0;
    	    l /= cos(ra0);
    	 } else {
    	    l  = coss*cos(ra)/sint - cos0*cos(ra0) + m*cos(ra0)*sin0;
    	    l /= -sin(ra0);
    	 }
    
        } else if (*cptr == 'S') {
    
          if (*(cptr + 1) == 'I' &&  *(cptr + 2) == 'N') { /* -SIN */
             if (sint<0.0)
    	   return(*status = 501);
             m = sins * cos(dec0) - coss * sin(dec0) * cos(ra-ra0);
    
          } else if (*(cptr + 1) == 'T' &&  *(cptr + 2) == 'G') {  /* -STG Sterographic*/
             da = ra - ra0;
             if (fabs(dec)>TWOPI/4.0)
    	   return(*status = 501);
             dd = 1.0 + sins * sin(dec0) + coss * cos(dec0) * cos(da);
             if (fabs(dd)1.0) m = 1.0;
             m = acos (m);
             if (m!=0) 
                m = m / sin(m);
             else
                m = 1.0;
             l = l * m;
             m = (sins * cos(dec0) - coss * sin(dec0) * cos(ra-ra0)) * m;
    
          } else if (*(cptr + 1) == 'I' &&  *(cptr + 2) == 'T') {  /* -AIT Aitoff */
             da = (ra - ra0) / 2.0;
             if (fabs(da)>TWOPI/4.0)
    	     return(*status = 501);
             dt = yinc*cosr + xinc*sinr;
             if (dt==0.0) dt = 1.0;
             dt = dt * D2R;
             dy = yref * D2R;
             dx = sin(dy+dt)/sqrt((1.0+cos(dy+dt))/2.0) -
                 sin(dy)/sqrt((1.0+cos(dy))/2.0);
             if (dx==0.0) dx = 1.0;
             geo2 = dt / dx;
             dt = xinc*cosr - yinc* sinr;
             if (dt==0.0) dt = 1.0;
             dt = dt * D2R;
             dx = 2.0 * cos(dy) * sin(dt/2.0);
             if (dx==0.0) dx = 1.0;
             geo1 = dt * sqrt((1.0+cos(dy)*cos(dt/2.0))/2.0) / dx;
             geo3 = geo2 * sin(dy) / sqrt((1.0+cos(dy))/2.0);
             dt = sqrt ((1.0 + cos(dec) * cos(da))/2.0);
             if (fabs(dt)TWOPI/4.0)
    	   return(*status = 501);
             if (fabs(dec0)>TWOPI/4.0)
    	   return(*status = 501);
             m = dec - dec0;
             l = dt * coss;
    
        } else if (*cptr == 'M') {  /* -MER mercator*/
             if (*(cptr + 1) != 'E' ||  *(cptr + 2) != 'R') {
                 return(*status = 504);
             }
    
             dt = yinc * cosr + xinc * sinr;
             if (dt==0.0) dt = 1.0;
             dy = (yref/2.0 + 45.0) * D2R;
             dx = dy + dt / 2.0 * D2R;
             dy = log (tan (dy));
             dx = log (tan (dx));
             geo2 = dt * D2R / (dx - dy);
             geo3 = geo2 * dy;
             geo1 = cos (yref*D2R);
             if (geo1<=0.0) geo1 = 1.0;
             dt = ra - ra0;
             l = geo1 * dt;
             dt = dec / 2.0 + TWOPI / 8.0;
             dt = tan (dt);
             if (dt (',f10.6,f10.6,') Sky')
    
          call ftxypx(xpos,ypos,xrval,yrval,xrpix,yrpix,xinc,yinc,
         &     rot,ctype, xpix, ypix,status)
          write(*,'(1x,A,I4)')
         & 'Calculated pixel coord. with ftxypx status =', status
          write(*,6502)xpos,ypos,xpix,ypix
    6502  format('  Sky (',f10.6,f10.6,') --> (',f10.6,f10.6,') Pixels')
    
         
    C        ######################################
    C        #  append another ASCII table        #
    C        ######################################
          
    
          tform(1)= 'A15'
          tform(2)= 'I11'
          tform(3)= 'F15.6'
          tform(4)= 'E13.5'
          tform(5)= 'D22.14'
    
          tbcol(1)= 1
          tbcol(2)= 17
          tbcol(3)= 29
          tbcol(4)= 45
          tbcol(5)= 59
          rowlen = 80
    
          ttype(1)= 'Name'
          ttype(2)= 'Ivalue'
          ttype(3)= 'Fvalue'
          ttype(4)= 'Evalue'
          ttype(5)= 'Dvalue'
    
          tunit(1)= ' '
          tunit(2)= 'm**2'
          tunit(3)= 'cm'
          tunit(4)= 'erg/s'
          tunit(5)= 'km/s'
    
          nrows = 11
          tfields = 5
          tblname = 'new_table'
    
          call ftitab(iunit, rowlen, nrows, tfields, ttype, tbcol, 
         & tform, tunit, tblname, status)
          write(*,'(1x,A)') ' '
          write(*,'(1x,A,I4)') 'ftitab status = ', status
    
          call ftpcls(iunit, 1, 1, 1, 3, onskey, status)  
    C write string values 
    
    C initialize arrays of values to write to primary array 
          
          do ii = 1,npixels
              boutarray(ii) = char(ii * 3 -3)
              ioutarray(ii) = ii * 3 -3
              joutarray(ii) = ii * 3 -3
              koutarray(ii) = ii * 3 -3
              eoutarray(ii) = ii * 3 -3
              doutarray(ii) = ii * 3 -3
          end do
    
          do ii = 2,5 
    C loop over cols 2 - 5 
          
              call ftpclb(iunit,  ii, 1, 1, 2, boutarray,  status) 
              call ftpcli(iunit,  ii, 3, 1, 2,ioutarray(3),status)
              call ftpclj(iunit,  ii, 5, 1, 2,joutarray(5),status)
              call ftpcle(iunit,  ii, 7, 1, 2,eoutarray(7),status)
              call ftpcld(iunit,  ii, 9, 1, 2,doutarray(9),status)
          end do
          write(*,'(1x,A,I4)') 'ftpcl status = ', status
          
    C read back the pixels with each datatype 
          call ftgcvb(iunit,   2, 1, 1, 10, bnul, binarray,anynull,
         & status)
          call ftgcvi(iunit,  2, 1, 1, 10, inul, iinarray,anynull,
         & status)
          call ftgcvj(iunit,    3, 1, 1, 10, knul, kinarray,anynull,
         & status)
          call ftgcvj(iunit,    3, 1, 1, 10, jnul, jinarray,anynull,
         & status)
          call ftgcve(iunit,   4, 1, 1, 10, enul, einarray,anynull,
         & status)
          call ftgcvd(iunit, 5, 1, 1, 10, dnul, dinarray,anynull,
         & status)
    
          write(*,'(1x,A)') 
         &'Column values written with ftpcl and read with ftgcl: '
          npixels = 10
          do ii = 1,npixels
             joutarray(ii) = ichar(binarray(ii))
          end do
          write(*,1601)(joutarray(ii),ii = 1, npixels),anynull,'(byte) '
          write(*,1601)(iinarray(ii),ii = 1, npixels),anynull,'(short) '
          write(*,1601)(kinarray(ii),ii = 1, npixels),anynull,'(int) '
          write(*,1601)(jinarray(ii),ii = 1, npixels),anynull,'(long) '
          write(*,1602)(einarray(ii),ii = 1, npixels),anynull,'(float) '
          write(*,1602)(dinarray(ii),ii = 1, npixels),anynull,'(double) '
    1601  format(1x,10i3,l3,1x,a)
    1602  format(2x,10f3.0,l2,1x,a)
          
    C        ###########################################################
    C        #  perform stress test by cycling thru all the extensions #
    C        ###########################################################
          write(*,'(1x,A)')' '
          write(*,'(1x,A)')'Repeatedly move to the 1st 4 HDUs of the file: '
    
          do ii = 1,10
            call ftmahd(iunit,  1, hdutype, status)
            call ftghdn(iunit, hdunum)
            call ftmrhd(iunit,  1, hdutype, status)
            call ftghdn(iunit, hdunum)
            call ftmrhd(iunit,  1, hdutype, status)
            call ftghdn(iunit, hdunum)
            call ftmrhd(iunit,  1, hdutype, status)
            call ftghdn(iunit, hdunum)
            call ftmrhd(iunit, -1, hdutype, status)
            call ftghdn(iunit, hdunum)
            if (status .gt. 0) go to 999
          end do
          
          write(*,'(1x,A)') ' '
    
          checksum = 1234567890.D+00
          call ftesum(checksum, .false., asciisum)
          write(*,'(1x,A,F13.1,2A)')'Encode checksum: ',checksum,' -> ',
         &  asciisum
          checksum = 0
          call ftdsum(asciisum, 0, checksum)
          write(*,'(1x,3A,F13.1)') 'Decode checksum: ',asciisum,' -> ',
         & checksum
    
          call ftpcks(iunit, status)
    
    C         don't print the CHECKSUM value because it is different every day
    C         because the current date is in the comment field.
    
             call ftgcrd(iunit, 'CHECKSUM', card, status)
    C         write(*,'(1x,A)') card
    
          call ftgcrd(iunit, 'DATASUM', card, status)
          write(*,'(1x,A)') card(1:22)
    
          call ftgcks(iunit, datsum, checksum, status)
          write(*,'(1x,A,F13.1,I4)') 'ftgcks data checksum, status = ',
         &         datsum, status
    
          call ftvcks(iunit, datastatus, hdustatus, status) 
          write(*,'(1x,A,3I4)')'ftvcks datastatus, hdustatus, status =  ',
         &          datastatus, hdustatus, status
     
          call ftprec(iunit,
         & 'new_key = ''written by fxprec'' / to change checksum',status)
          call ftucks(iunit, status)
          write(*,'(1x,A,I4)') 'ftupck status = ', status
    
          call ftgcrd(iunit, 'DATASUM', card, status)
          write(*,'(1x,A)') card(1:22)
          call ftvcks(iunit, datastatus, hdustatus, status) 
          write(*,'(1x,A,3I4)') 'ftvcks datastatus, hdustatus, status =  ',
         &          datastatus, hdustatus, status
     
    C        delete the checksum keywords, so that the FITS file is always
    C        the same, regardless of the date of when testprog is run.
          
          call ftdkey(iunit, 'CHECKSUM', status)
          call ftdkey(iunit, 'DATASUM',  status)
    
    
    C        ############################
    C        #  close file and quit     #
    C        ############################
          
    
    999   continue  
    C jump here on error 
    
          call ftclos(iunit, status) 
          write(*,'(1x,A,I4)') 'ftclos status = ', status
          write(*,'(1x,A)')' '
    
          write(*,'(1x,A)')
         &  'Normally, there should be 8 error messages on the'
          write(*,'(1x,A)') 'stack all regarding ''numerical overflows'':'
    
          call ftgmsg(errmsg)
          nmsg = 0
    
    998   continue
          if (errmsg .ne. ' ')then      
              write(*,'(1x,A)') errmsg
              nmsg = nmsg + 1
              call ftgmsg(errmsg)
              go to 998
          end if
    
          if (nmsg .ne. 8)write(*,'(1x,A)')
         & ' WARNING: Did not find the expected 8 error messages!'
    
          call ftgerr(status, errmsg)
          write(*,'(1x,A)')' '
          write(*,'(1x,A,I4,2A)') 'Status =', status,': ', errmsg(1:50)
          end
    healpy-1.8.1/cfitsio/getcoluj.c0000654000175000017530000021665012272000775017047 0ustar  zoncaplanck00000000000000/*  This file, getcoluj.c, contains routines that read data elements from  */
    /*  a FITS image or table, with unsigned long data type.                   */
    
    /*  The FITSIO software was written by William Pence at the High Energy    */
    /*  Astrophysic Science Archive Research Center (HEASARC) at the NASA      */
    /*  Goddard Space Flight Center.                                           */
    
    #include 
    #include 
    #include 
    #include 
    #include "fitsio2.h"
    
    /*--------------------------------------------------------------------------*/
    int ffgpvuj(fitsfile *fptr,   /* I - FITS file pointer                       */
                long  group,      /* I - group to read (1 = 1st group)           */
                LONGLONG  firstelem,  /* I - first vector element to read (1 = 1st)  */
                LONGLONG  nelem,      /* I - number of values to read                */
       unsigned long  nulval,     /* I - value for undefined pixels              */
       unsigned long  *array,     /* O - array of values that are returned       */
                int  *anynul,     /* O - set to 1 if any values are null; else 0 */
                int  *status)     /* IO - error status                           */
    /*
      Read an array of values from the primary array. Data conversion
      and scaling will be performed if necessary (e.g, if the datatype of
      the FITS array is not the same as the array being read).
      Undefined elements will be set equal to NULVAL, unless NULVAL=0
      in which case no checking for undefined values will be performed.
      ANYNUL is returned with a value of .true. if any pixels are undefined.
    */
    {
        long row;
        char cdummy;
        int nullcheck = 1;
        unsigned long nullvalue;
    
        if (fits_is_compressed_image(fptr, status))
        {
            /* this is a compressed image in a binary table */
            nullvalue = nulval;  /* set local variable */
    
            fits_read_compressed_pixels(fptr, TULONG, firstelem, nelem,
                nullcheck, &nullvalue, array, NULL, anynul, status);
            return(*status);
        }
    
        /*
          the primary array is represented as a binary table:
          each group of the primary array is a row in the table,
          where the first column contains the group parameters
          and the second column contains the image itself.
        */
    
        row=maxvalue(1,group);
    
        ffgcluj(fptr, 2, row, firstelem, nelem, 1, 1, nulval,
                   array, &cdummy, anynul, status);
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgpfuj(fitsfile *fptr,   /* I - FITS file pointer                       */
                long  group,      /* I - group to read (1 = 1st group)           */
                LONGLONG  firstelem,  /* I - first vector element to read (1 = 1st)  */
                LONGLONG  nelem,      /* I - number of values to read                */
       unsigned long  *array,     /* O - array of values that are returned       */
                char *nularray,   /* O - array of null pixel flags               */
                int  *anynul,     /* O - set to 1 if any values are null; else 0 */
                int  *status)     /* IO - error status                           */
    /*
      Read an array of values from the primary array. Data conversion
      and scaling will be performed if necessary (e.g, if the datatype of
      the FITS array is not the same as the array being read).
      Any undefined pixels in the returned array will be set = 0 and the 
      corresponding nularray value will be set = 1.
      ANYNUL is returned with a value of .true. if any pixels are undefined.
    */
    {
        long row;
        int nullcheck = 2;
    
        if (fits_is_compressed_image(fptr, status))
        {
            /* this is a compressed image in a binary table */
    
            fits_read_compressed_pixels(fptr, TULONG, firstelem, nelem,
                nullcheck, NULL, array, nularray, anynul, status);
            return(*status);
        }
    
        /*
          the primary array is represented as a binary table:
          each group of the primary array is a row in the table,
          where the first column contains the group parameters
          and the second column contains the image itself.
        */
    
        row=maxvalue(1,group);
    
        ffgcluj(fptr, 2, row, firstelem, nelem, 1, 2, 0L,
                   array, nularray, anynul, status);
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffg2duj(fitsfile *fptr,  /* I - FITS file pointer                       */
               long  group,     /* I - group to read (1 = 1st group)           */
      unsigned long  nulval,    /* set undefined pixels equal to this          */
               LONGLONG  ncols,     /* I - number of pixels in each row of array   */
               LONGLONG  naxis1,    /* I - FITS image NAXIS1 value                 */
               LONGLONG  naxis2,    /* I - FITS image NAXIS2 value                 */
      unsigned long  *array,    /* O - array to be filled and returned         */
               int  *anynul,    /* O - set to 1 if any values are null; else 0 */
               int  *status)    /* IO - error status                           */
    /*
      Read an entire 2-D array of values to the primary array. Data conversion
      and scaling will be performed if necessary (e.g, if the datatype of the
      FITS array is not the same as the array being read).  Any null
      values in the array will be set equal to the value of nulval, unless
      nulval = 0 in which case no null checking will be performed.
    */
    {
        /* call the 3D reading routine, with the 3rd dimension = 1 */
    
        ffg3duj(fptr, group, nulval, ncols, naxis2, naxis1, naxis2, 1, array, 
               anynul, status);
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffg3duj(fitsfile *fptr,  /* I - FITS file pointer                       */
               long  group,     /* I - group to read (1 = 1st group)           */
      unsigned long  nulval,    /* set undefined pixels equal to this          */
               LONGLONG  ncols,     /* I - number of pixels in each row of array   */
               LONGLONG  nrows,     /* I - number of rows in each plane of array   */
               LONGLONG  naxis1,    /* I - FITS image NAXIS1 value                 */
               LONGLONG  naxis2,    /* I - FITS image NAXIS2 value                 */
               LONGLONG  naxis3,    /* I - FITS image NAXIS3 value                 */
      unsigned long  *array,    /* O - array to be filled and returned         */
               int  *anynul,    /* O - set to 1 if any values are null; else 0 */
               int  *status)    /* IO - error status                           */
    /*
      Read an entire 3-D array of values to the primary array. Data conversion
      and scaling will be performed if necessary (e.g, if the datatype of the
      FITS array is not the same as the array being read).  Any null
      values in the array will be set equal to the value of nulval, unless
      nulval = 0 in which case no null checking will be performed.
    */
    {
        long tablerow, ii, jj;
        char cdummy;
        int nullcheck = 1;
        long inc[] = {1,1,1};
        LONGLONG fpixel[] = {1,1,1}, nfits, narray;
        LONGLONG lpixel[3];
        unsigned long nullvalue;
    
        if (fits_is_compressed_image(fptr, status))
        {
            /* this is a compressed image in a binary table */
    
            lpixel[0] = ncols;
            lpixel[1] = nrows;
            lpixel[2] = naxis3;
            nullvalue = nulval;  /* set local variable */
    
            fits_read_compressed_img(fptr, TULONG, fpixel, lpixel, inc,
                nullcheck, &nullvalue, array, NULL, anynul, status);
            return(*status);
        }
    
        /*
          the primary array is represented as a binary table:
          each group of the primary array is a row in the table,
          where the first column contains the group parameters
          and the second column contains the image itself.
        */
        tablerow=maxvalue(1,group);
    
        if (ncols == naxis1 && nrows == naxis2)  /* arrays have same size? */
        {
           /* all the image pixels are contiguous, so read all at once */
           ffgcluj(fptr, 2, tablerow, 1, naxis1 * naxis2 * naxis3, 1, 1, nulval,
                   array, &cdummy, anynul, status);
           return(*status);
        }
    
        if (ncols < naxis1 || nrows < naxis2)
           return(*status = BAD_DIMEN);
    
        nfits = 1;   /* next pixel in FITS image to read */
        narray = 0;  /* next pixel in output array to be filled */
    
        /* loop over naxis3 planes in the data cube */
        for (jj = 0; jj < naxis3; jj++)
        {
          /* loop over the naxis2 rows in the FITS image, */
          /* reading naxis1 pixels to each row            */
    
          for (ii = 0; ii < naxis2; ii++)
          {
           if (ffgcluj(fptr, 2, tablerow, nfits, naxis1, 1, 1, nulval,
              &array[narray], &cdummy, anynul, status) > 0)
              return(*status);
    
           nfits += naxis1;
           narray += ncols;
          }
          narray += (nrows - naxis2) * ncols;
        }
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgsvuj(fitsfile *fptr, /* I - FITS file pointer                         */
               int  colnum,    /* I - number of the column to read (1 = 1st)    */
               int naxis,      /* I - number of dimensions in the FITS array    */
               long  *naxes,   /* I - size of each dimension                    */
               long  *blc,     /* I - 'bottom left corner' of the subsection    */
               long  *trc,     /* I - 'top right corner' of the subsection      */
               long  *inc,     /* I - increment to be applied in each dimension */
      unsigned long nulval,    /* I - value to set undefined pixels             */
      unsigned long *array,    /* O - array to be filled and returned           */
               int  *anynul,   /* O - set to 1 if any values are null; else 0   */
               int  *status)   /* IO - error status                             */
    /*
      Read a subsection of data values from an image or a table column.
      This routine is set up to handle a maximum of nine dimensions.
    */
    {
        long ii,i0, i1,i2,i3,i4,i5,i6,i7,i8,row,rstr,rstp,rinc;
        long str[9],stp[9],incr[9];
        long nelem, nultyp, ninc, numcol;
        LONGLONG felem, dsize[10], blcll[9], trcll[9];
        int hdutype, anyf;
        char ldummy, msg[FLEN_ERRMSG];
        int nullcheck = 1;
        unsigned long nullvalue;
    
        if (naxis < 1 || naxis > 9)
        {
            sprintf(msg, "NAXIS = %d in call to ffgsvuj is out of range", naxis);
            ffpmsg(msg);
            return(*status = BAD_DIMEN);
        }
    
        if (fits_is_compressed_image(fptr, status))
        {
            /* this is a compressed image in a binary table */
    
            for (ii=0; ii < naxis; ii++) {
    	    blcll[ii] = blc[ii];
    	    trcll[ii] = trc[ii];
    	}
    
            nullvalue = nulval;  /* set local variable */
    
            fits_read_compressed_img(fptr, TULONG, blcll, trcll, inc,
                nullcheck, &nullvalue, array, NULL, anynul, status);
            return(*status);
        }
    
    /*
        if this is a primary array, then the input COLNUM parameter should
        be interpreted as the row number, and we will alway read the image
        data from column 2 (any group parameters are in column 1).
    */
        if (ffghdt(fptr, &hdutype, status) > 0)
            return(*status);
    
        if (hdutype == IMAGE_HDU)
        {
            /* this is a primary array, or image extension */
            if (colnum == 0)
            {
                rstr = 1;
                rstp = 1;
            }
            else
            {
                rstr = colnum;
                rstp = colnum;
            }
            rinc = 1;
            numcol = 2;
        }
        else
        {
            /* this is a table, so the row info is in the (naxis+1) elements */
            rstr = blc[naxis];
            rstp = trc[naxis];
            rinc = inc[naxis];
            numcol = colnum;
        }
    
        nultyp = 1;
        if (anynul)
            *anynul = FALSE;
    
        i0 = 0;
        for (ii = 0; ii < 9; ii++)
        {
            str[ii] = 1;
            stp[ii] = 1;
            incr[ii] = 1;
            dsize[ii] = 1;
        }
    
        for (ii = 0; ii < naxis; ii++)
        {
          if (trc[ii] < blc[ii])
          {
            sprintf(msg, "ffgsvuj: illegal range specified for axis %ld", ii + 1);
            ffpmsg(msg);
            return(*status = BAD_PIX_NUM);
          }
    
          str[ii] = blc[ii];
          stp[ii] = trc[ii];
          incr[ii] = inc[ii];
          dsize[ii + 1] = dsize[ii] * naxes[ii];
        }
    
        if (naxis == 1 && naxes[0] == 1)
        {
          /* This is not a vector column, so read all the rows at once */
          nelem = (rstp - rstr) / rinc + 1;
          ninc = rinc;
          rstp = rstr;
        }
        else
        {
          /* have to read each row individually, in all dimensions */
          nelem = (stp[0] - str[0]) / inc[0] + 1;
          ninc = incr[0];
        }
    
        for (row = rstr; row <= rstp; row += rinc)
        {
         for (i8 = str[8]; i8 <= stp[8]; i8 += incr[8])
         {
          for (i7 = str[7]; i7 <= stp[7]; i7 += incr[7])
          {
           for (i6 = str[6]; i6 <= stp[6]; i6 += incr[6])
           {
            for (i5 = str[5]; i5 <= stp[5]; i5 += incr[5])
            {
             for (i4 = str[4]; i4 <= stp[4]; i4 += incr[4])
             {
              for (i3 = str[3]; i3 <= stp[3]; i3 += incr[3])
              {
               for (i2 = str[2]; i2 <= stp[2]; i2 += incr[2])
               {
                for (i1 = str[1]; i1 <= stp[1]; i1 += incr[1])
                {
                  felem=str[0] + (i1 - 1) * dsize[1] + (i2 - 1) * dsize[2] + 
                                 (i3 - 1) * dsize[3] + (i4 - 1) * dsize[4] +
                                 (i5 - 1) * dsize[5] + (i6 - 1) * dsize[6] +
                                 (i7 - 1) * dsize[7] + (i8 - 1) * dsize[8];
    
                  if ( ffgcluj(fptr, numcol, row, felem, nelem, ninc, nultyp,
                       nulval, &array[i0], &ldummy, &anyf, status) > 0)
                       return(*status);
    
                  if (anyf && anynul)
                      *anynul = TRUE;
    
                  i0 += nelem;
                }
               }
              }
             }
            }
           }
          }
         }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgsfuj(fitsfile *fptr, /* I - FITS file pointer                         */
               int  colnum,    /* I - number of the column to read (1 = 1st)    */
               int naxis,      /* I - number of dimensions in the FITS array    */
               long  *naxes,   /* I - size of each dimension                    */
               long  *blc,     /* I - 'bottom left corner' of the subsection    */
               long  *trc,     /* I - 'top right corner' of the subsection      */
               long  *inc,     /* I - increment to be applied in each dimension */
      unsigned long *array,    /* O - array to be filled and returned           */
               char *flagval,  /* O - set to 1 if corresponding value is null   */
               int  *anynul,   /* O - set to 1 if any values are null; else 0   */
               int  *status)   /* IO - error status                             */
    /*
      Read a subsection of data values from an image or a table column.
      This routine is set up to handle a maximum of nine dimensions.
    */
    {
        long ii,i0, i1,i2,i3,i4,i5,i6,i7,i8,row,rstr,rstp,rinc;
        long str[9],stp[9],incr[9],dsize[10];
        LONGLONG blcll[9], trcll[9];
        long felem, nelem, nultyp, ninc, numcol;
        unsigned long nulval = 0;
        int hdutype, anyf;
        char msg[FLEN_ERRMSG];
        int nullcheck = 2;
    
        if (naxis < 1 || naxis > 9)
        {
            sprintf(msg, "NAXIS = %d in call to ffgsvj is out of range", naxis);
            ffpmsg(msg);
            return(*status = BAD_DIMEN);
        }
    
        if (fits_is_compressed_image(fptr, status))
        {
            /* this is a compressed image in a binary table */
    
            for (ii=0; ii < naxis; ii++) {
    	    blcll[ii] = blc[ii];
    	    trcll[ii] = trc[ii];
    	}
    
            fits_read_compressed_img(fptr, TULONG, blcll, trcll, inc,
                nullcheck, NULL, array, flagval, anynul, status);
            return(*status);
        }
    
    /*
        if this is a primary array, then the input COLNUM parameter should
        be interpreted as the row number, and we will alway read the image
        data from column 2 (any group parameters are in column 1).
    */
        if (ffghdt(fptr, &hdutype, status) > 0)
            return(*status);
    
        if (hdutype == IMAGE_HDU)
        {
            /* this is a primary array, or image extension */
            if (colnum == 0)
            {
                rstr = 1;
                rstp = 1;
            }
            else
            {
                rstr = colnum;
                rstp = colnum;
            }
            rinc = 1;
            numcol = 2;
        }
        else
        {
            /* this is a table, so the row info is in the (naxis+1) elements */
            rstr = blc[naxis];
            rstp = trc[naxis];
            rinc = inc[naxis];
            numcol = colnum;
        }
    
        nultyp = 2;
        if (anynul)
            *anynul = FALSE;
    
        i0 = 0;
        for (ii = 0; ii < 9; ii++)
        {
            str[ii] = 1;
            stp[ii] = 1;
            incr[ii] = 1;
            dsize[ii] = 1;
        }
    
        for (ii = 0; ii < naxis; ii++)
        {
          if (trc[ii] < blc[ii])
          {
            sprintf(msg, "ffgsvj: illegal range specified for axis %ld", ii + 1);
            ffpmsg(msg);
            return(*status = BAD_PIX_NUM);
          }
    
          str[ii] = blc[ii];
          stp[ii] = trc[ii];
          incr[ii] = inc[ii];
          dsize[ii + 1] = dsize[ii] * naxes[ii];
        }
    
        if (naxis == 1 && naxes[0] == 1)
        {
          /* This is not a vector column, so read all the rows at once */
          nelem = (rstp - rstr) / rinc + 1;
          ninc = rinc;
          rstp = rstr;
        }
        else
        {
          /* have to read each row individually, in all dimensions */
          nelem = (stp[0] - str[0]) / inc[0] + 1;
          ninc = incr[0];
        }
    
        for (row = rstr; row <= rstp; row += rinc)
        {
         for (i8 = str[8]; i8 <= stp[8]; i8 += incr[8])
         {
          for (i7 = str[7]; i7 <= stp[7]; i7 += incr[7])
          {
           for (i6 = str[6]; i6 <= stp[6]; i6 += incr[6])
           {
            for (i5 = str[5]; i5 <= stp[5]; i5 += incr[5])
            {
             for (i4 = str[4]; i4 <= stp[4]; i4 += incr[4])
             {
              for (i3 = str[3]; i3 <= stp[3]; i3 += incr[3])
              {
               for (i2 = str[2]; i2 <= stp[2]; i2 += incr[2])
               {
                for (i1 = str[1]; i1 <= stp[1]; i1 += incr[1])
                {
                  felem=str[0] + (i1 - 1) * dsize[1] + (i2 - 1) * dsize[2] + 
                                 (i3 - 1) * dsize[3] + (i4 - 1) * dsize[4] +
                                 (i5 - 1) * dsize[5] + (i6 - 1) * dsize[6] +
                                 (i7 - 1) * dsize[7] + (i8 - 1) * dsize[8];
    
                  if ( ffgcluj(fptr, numcol, row, felem, nelem, ninc, nultyp,
                       nulval, &array[i0], &flagval[i0], &anyf, status) > 0)
                       return(*status);
    
                  if (anyf && anynul)
                      *anynul = TRUE;
    
                  i0 += nelem;
                }
               }
              }
             }
            }
           }
          }
         }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffggpuj(fitsfile *fptr,   /* I - FITS file pointer                       */
                long  group,      /* I - group to read (1 = 1st group)           */
                long  firstelem,  /* I - first vector element to read (1 = 1st)  */
                long  nelem,      /* I - number of values to read                */
       unsigned long  *array,     /* O - array of values that are returned       */
                int  *status)     /* IO - error status                           */
    /*
      Read an array of group parameters from the primary array. Data conversion
      and scaling will be performed if necessary (e.g, if the datatype of
      the FITS array is not the same as the array being read).
    */
    {
        long row;
        int idummy;
        char cdummy;
        /*
          the primary array is represented as a binary table:
          each group of the primary array is a row in the table,
          where the first column contains the group parameters
          and the second column contains the image itself.
        */
    
        row=maxvalue(1,group);
    
        ffgcluj(fptr, 1, row, firstelem, nelem, 1, 1, 0L,
                   array, &cdummy, &idummy, status);
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgcvuj(fitsfile *fptr,   /* I - FITS file pointer                       */
               int  colnum,      /* I - number of column to read (1 = 1st col)  */
               LONGLONG  firstrow,   /* I - first row to read (1 = 1st row)         */
               LONGLONG  firstelem,  /* I - first vector element to read (1 = 1st)  */
               LONGLONG  nelem,      /* I - number of values to read                */
      unsigned long  nulval,     /* I - value for null pixels                   */
      unsigned long *array,      /* O - array of values that are read           */
               int  *anynul,     /* O - set to 1 if any values are null; else 0 */
               int  *status)     /* IO - error status                           */
    /*
      Read an array of values from a column in the current FITS HDU. Automatic
      datatype conversion will be performed if the datatype of the column does not
      match the datatype of the array parameter. The output values will be scaled 
      by the FITS TSCALn and TZEROn values if these values have been defined.
      Any undefined pixels will be set equal to the value of 'nulval' unless
      nulval = 0 in which case no checks for undefined pixels will be made.
    */
    {
        char cdummy;
    
        ffgcluj(fptr, colnum, firstrow, firstelem, nelem, 1, 1, nulval,
               array, &cdummy, anynul, status);
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgcfuj(fitsfile *fptr,   /* I - FITS file pointer                       */
               int  colnum,      /* I - number of column to read (1 = 1st col)  */
               LONGLONG  firstrow,   /* I - first row to read (1 = 1st row)         */
               LONGLONG  firstelem,  /* I - first vector element to read (1 = 1st)  */
               LONGLONG  nelem,      /* I - number of values to read                */
      unsigned long  *array,     /* O - array of values that are read           */
               char *nularray,   /* O - array of flags: 1 if null pixel; else 0 */
               int  *anynul,     /* O - set to 1 if any values are null; else 0 */
               int  *status)     /* IO - error status                           */
    /*
      Read an array of values from a column in the current FITS HDU. Automatic
      datatype conversion will be performed if the datatype of the column does not
      match the datatype of the array parameter. The output values will be scaled 
      by the FITS TSCALn and TZEROn values if these values have been defined.
      Nularray will be set = 1 if the corresponding array pixel is undefined, 
      otherwise nularray will = 0.
    */
    {
        unsigned long dummy = 0;
    
        ffgcluj(fptr, colnum, firstrow, firstelem, nelem, 1, 2, dummy,
               array, nularray, anynul, status);
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgcluj(fitsfile *fptr,   /* I - FITS file pointer                       */
                int  colnum,      /* I - number of column to read (1 = 1st col)  */
                LONGLONG  firstrow,   /* I - first row to read (1 = 1st row)         */
                LONGLONG  firstelem, /* I - first vector element to read (1 = 1st)  */
                LONGLONG  nelem,      /* I - number of values to read                */
                long  elemincre,  /* I - pixel increment; e.g., 2 = every other  */
                int   nultyp,     /* I - null value handling code:               */
                                  /*     1: set undefined pixels = nulval        */
                                  /*     2: set nularray=1 for undefined pixels  */
       unsigned long  nulval,     /* I - value for null pixels if nultyp = 1     */
       unsigned long  *array,     /* O - array of values that are read           */
                char *nularray,   /* O - array of flags = 1 if nultyp = 2        */
                int  *anynul,     /* O - set to 1 if any values are null; else 0 */
                int  *status)     /* IO - error status                           */
    /*
      Read an array of values from a column in the current FITS HDU.
      The column number may refer to a real column in an ASCII or binary table, 
      or it may refer be a virtual column in a 1 or more grouped FITS primary
      array or image extension.  FITSIO treats a primary array as a binary table
      with 2 vector columns: the first column contains the group parameters (often
      with length = 0) and the second column contains the array of image pixels.
      Each row of the table represents a group in the case of multigroup FITS
      images.
    
      The output array of values will be converted from the datatype of the column 
      and will be scaled by the FITS TSCALn and TZEROn values if necessary.
    */
    {
        double scale, zero, power = 1., dtemp;
        int tcode, maxelem2, hdutype, xcode, decimals;
        long twidth, incre;
        long ii, xwidth, ntodo;
        int nulcheck;
        LONGLONG repeat, startpos, elemnum, readptr, tnull;
        LONGLONG rowlen, rownum, remain, next, rowincre, maxelem;
        char tform[20];
        char message[81];
        char snull[20];   /*  the FITS null value if reading from ASCII table  */
    
        double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */
        void *buffer;
    
        if (*status > 0 || nelem == 0)  /* inherit input status value if > 0 */
            return(*status);
    
        buffer = cbuff;
    
        if (anynul)
            *anynul = 0;
    
        if (nultyp == 2)
            memset(nularray, 0, (size_t) nelem);   /* initialize nullarray */
    
        /*---------------------------------------------------*/
        /*  Check input and get parameters about the column: */
        /*---------------------------------------------------*/
        if ( ffgcprll( fptr, colnum, firstrow, firstelem, nelem, 0, &scale, &zero,
             tform, &twidth, &tcode, &maxelem2, &startpos, &elemnum, &incre,
             &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0 )
             return(*status);
        maxelem = maxelem2;
    
        incre *= elemincre;   /* multiply incre to just get every nth pixel */
    
        if (tcode == TSTRING)    /* setup for ASCII tables */
        {
          /* get the number of implied decimal places if no explicit decmal point */
          ffasfm(tform, &xcode, &xwidth, &decimals, status); 
          for(ii = 0; ii < decimals; ii++)
            power *= 10.;
        }
        /*------------------------------------------------------------------*/
        /*  Decide whether to check for null values in the input FITS file: */
        /*------------------------------------------------------------------*/
        nulcheck = nultyp; /* by default check for null values in the FITS file */
    
        if (nultyp == 1 && nulval == 0)
           nulcheck = 0;    /* calling routine does not want to check for nulls */
    
        else if (tcode%10 == 1 &&        /* if reading an integer column, and  */ 
                tnull == NULL_UNDEFINED) /* if a null value is not defined,    */
                nulcheck = 0;            /* then do not check for null values. */
    
        else if (tcode == TSHORT && (tnull > SHRT_MAX || tnull < SHRT_MIN) )
                nulcheck = 0;            /* Impossible null value */
    
        else if (tcode == TBYTE && (tnull > 255 || tnull < 0) )
                nulcheck = 0;            /* Impossible null value */
    
        else if (tcode == TSTRING && snull[0] == ASCII_NULL_UNDEFINED)
             nulcheck = 0;
    
        /*----------------------------------------------------------------------*/
        /*  If FITS column and output data array have same datatype, then we do */
        /*  not need to use a temporary buffer to store intermediate datatype.  */
        /*----------------------------------------------------------------------*/
        if (tcode == TLONG)  /* Special Case:                        */
        {                             /* no type convertion required, so read */
                                      /* data directly into output buffer.    */
    
            if (nelem < (LONGLONG)INT32_MAX/4) {
                maxelem = nelem;
            } else {
                maxelem = INT32_MAX/4;
            }
        }
    
        /*---------------------------------------------------------------------*/
        /*  Now read the pixels from the FITS column. If the column does not   */
        /*  have the same datatype as the output array, then we have to read   */
        /*  the raw values into a temporary buffer (of limited size).  In      */
        /*  the case of a vector colum read only 1 vector of values at a time  */
        /*  then skip to the next row if more values need to be read.          */
        /*  After reading the raw values, then call the fffXXYY routine to (1) */
        /*  test for undefined values, (2) convert the datatype if necessary,  */
        /*  and (3) scale the values by the FITS TSCALn and TZEROn linear      */
        /*  scaling parameters.                                                */
        /*---------------------------------------------------------------------*/
        remain = nelem;           /* remaining number of values to read */
        next = 0;                 /* next element in array to be read   */
        rownum = 0;               /* row number, relative to firstrow   */
    
        while (remain)
        {
            /* limit the number of pixels to read at one time to the number that
               will fit in the buffer or to the number of pixels that remain in
               the current vector, which ever is smaller.
            */
            ntodo = (long) minvalue(remain, maxelem);      
            ntodo = (long) minvalue(ntodo, ((repeat - elemnum - 1)/elemincre +1));
    
            readptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * (incre / elemincre));
    
            switch (tcode) 
            {
                case (TLONG):
                    ffgi4b(fptr, readptr, ntodo, incre, (INT32BIT *) &array[next],
                           status);
                    fffi4u4((INT32BIT *) &array[next], ntodo, scale, zero,
                             nulcheck, (INT32BIT) tnull, nulval, &nularray[next],
                             anynul, &array[next], status);
                    break;
                case (TLONGLONG):
    
                    ffgi8b(fptr, readptr, ntodo, incre, (long *) buffer, status);
                    fffi8u4( (LONGLONG *) buffer, ntodo, scale, zero, 
                               nulcheck, tnull, nulval, &nularray[next], 
                                anynul, &array[next], status);
                    break;
                case (TBYTE):
                    ffgi1b(fptr, readptr, ntodo, incre, (unsigned char *) buffer,
                           status);
                    fffi1u4((unsigned char *) buffer, ntodo, scale, zero, nulcheck, 
                         (unsigned char) tnull, nulval, &nularray[next], anynul, 
                         &array[next], status);
                    break;
                case (TSHORT):
                    ffgi2b(fptr, readptr, ntodo, incre, (short  *) buffer, status);
                    fffi2u4((short  *) buffer, ntodo, scale, zero, nulcheck, 
                          (short) tnull, nulval, &nularray[next], anynul, 
                          &array[next], status);
                    break;
                case (TFLOAT):
                    ffgr4b(fptr, readptr, ntodo, incre, (float  *) buffer, status);
                    fffr4u4((float  *) buffer, ntodo, scale, zero, nulcheck, 
                           nulval, &nularray[next], anynul, 
                           &array[next], status);
                    break;
                case (TDOUBLE):
                    ffgr8b(fptr, readptr, ntodo, incre, (double *) buffer, status);
                    fffr8u4((double *) buffer, ntodo, scale, zero, nulcheck, 
                              nulval, &nularray[next], anynul, 
                              &array[next], status);
                    break;
                case (TSTRING):
                    ffmbyt(fptr, readptr, REPORT_EOF, status);
           
                    if (incre == twidth)    /* contiguous bytes */
                         ffgbyt(fptr, ntodo * twidth, buffer, status);
                    else
                         ffgbytoff(fptr, twidth, ntodo, incre - twidth, buffer,
                                   status);
    
                    fffstru4((char *) buffer, ntodo, scale, zero, twidth, power,
                         nulcheck, snull, nulval, &nularray[next], anynul,
                         &array[next], status);
                    break;
    
                default:  /*  error trap for invalid column format */
                    sprintf(message, 
                       "Cannot read numbers from column %d which has format %s",
                        colnum, tform);
                    ffpmsg(message);
                    if (hdutype == ASCII_TBL)
                        return(*status = BAD_ATABLE_FORMAT);
                    else
                        return(*status = BAD_BTABLE_FORMAT);
    
            } /* End of switch block */
    
            /*-------------------------*/
            /*  Check for fatal error  */
            /*-------------------------*/
            if (*status > 0)  /* test for error during previous read operation */
            {
    	  dtemp = (double) next;
              if (hdutype > 0)
                sprintf(message,
                "Error reading elements %.0f thru %.0f from column %d (ffgcluj).",
                  dtemp+1., dtemp+ntodo, colnum);
              else
                sprintf(message,
                "Error reading elements %.0f thru %.0f from image (ffgcluj).",
                  dtemp+1., dtemp+ntodo);
    
              ffpmsg(message);
              return(*status);
            }
    
            /*--------------------------------------------*/
            /*  increment the counters for the next loop  */
            /*--------------------------------------------*/
            remain -= ntodo;
            if (remain)
            {
                next += ntodo;
                elemnum = elemnum + (ntodo * elemincre);
    
                if (elemnum >= repeat)  /* completed a row; start on later row */
                {
                    rowincre = elemnum / repeat;
                    rownum += rowincre;
                    elemnum = elemnum - (rowincre * repeat);
                }
            }
        }  /*  End of main while Loop  */
    
    
        /*--------------------------------*/
        /*  check for numerical overflow  */
        /*--------------------------------*/
        if (*status == OVERFLOW_ERR)
        {
            ffpmsg(
            "Numerical overflow during type conversion while reading FITS data.");
            *status = NUM_OVERFLOW;
        }
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int fffi1u4(unsigned char *input, /* I - array of values to be converted     */
                long ntodo,           /* I - number of elements in the array     */
                double scale,         /* I - FITS TSCALn or BSCALE value         */
                double zero,          /* I - FITS TZEROn or BZERO  value         */
                int nullcheck,        /* I - null checking code; 0 = don't check */
                                      /*     1:set null pixels = nullval         */
                                      /*     2: if null pixel, set nullarray = 1 */
                unsigned char tnull,  /* I - value of FITS TNULLn keyword if any */
       unsigned long nullval,         /* I - set null pixels, if nullcheck = 1   */
                char *nullarray,      /* I - bad pixel array, if nullcheck = 2   */
                int  *anynull,        /* O - set to 1 if any pixels are null     */
       unsigned long *output,         /* O - array of converted pixels           */
                int *status)          /* IO - error status                       */
    /*
      Copy input to output following reading of the input from a FITS file.
      Check for null values and do datatype conversion and scaling if required.
      The nullcheck code value determines how any null values in the input array
      are treated.  A null value is an input pixel that is equal to tnull.  If 
      nullcheck = 0, then no checking for nulls is performed and any null values
      will be transformed just like any other pixel.  If nullcheck = 1, then the
      output pixel will be set = nullval if the corresponding input pixel is null.
      If nullcheck = 2, then if the pixel is null then the corresponding value of
      nullarray will be set to 1; the value of nullarray for non-null pixels 
      will = 0.  The anynull parameter will be set = 1 if any of the returned
      pixels are null, otherwise anynull will be returned with a value = 0;
    */
    {
        long ii;
        double dvalue;
    
        if (nullcheck == 0)     /* no null checking required */
        {
            if (scale == 1. && zero == 0.)      /* no scaling */
            {       
                for (ii = 0; ii < ntodo; ii++)
                    output[ii] = (unsigned long) input[ii];  /* copy input */
            }
            else             /* must scale the data */
            {
                for (ii = 0; ii < ntodo; ii++)
                {
                    dvalue = input[ii] * scale + zero;
    
                    if (dvalue < DULONG_MIN)
                    {
                        *status = OVERFLOW_ERR;
                        output[ii] = 0;
                    }
                    else if (dvalue > DULONG_MAX)
                    {
                        *status = OVERFLOW_ERR;
                        output[ii] = ULONG_MAX;
                    }
                    else
                        output[ii] = (unsigned long) dvalue;
                }
            }
        }
        else        /* must check for null values */
        {
            if (scale == 1. && zero == 0.)  /* no scaling */
            {       
                for (ii = 0; ii < ntodo; ii++)
                {
                    if (input[ii] == tnull)
                    {
                        *anynull = 1;
                        if (nullcheck == 1)
                            output[ii] = nullval;
                        else
                            nullarray[ii] = 1;
                    }
                    else
                        output[ii] = (unsigned long) input[ii];
                }
            }
            else                  /* must scale the data */
            {
                for (ii = 0; ii < ntodo; ii++)
                {
                    if (input[ii] == tnull)
                    {
                        *anynull = 1;
                        if (nullcheck == 1)
                            output[ii] = nullval;
                        else
                            nullarray[ii] = 1;
                    }
                    else
                    {
                        dvalue = input[ii] * scale + zero;
    
                        if (dvalue < DULONG_MIN)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = 0;
                        }
                        else if (dvalue > DULONG_MAX)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = ULONG_MAX;
                        }
                        else
                            output[ii] = (unsigned long) dvalue;
                    }
                }
            }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int fffi2u4(short *input,         /* I - array of values to be converted     */
                long ntodo,           /* I - number of elements in the array     */
                double scale,         /* I - FITS TSCALn or BSCALE value         */
                double zero,          /* I - FITS TZEROn or BZERO  value         */
                int nullcheck,        /* I - null checking code; 0 = don't check */
                                      /*     1:set null pixels = nullval         */
                                      /*     2: if null pixel, set nullarray = 1 */
                short tnull,          /* I - value of FITS TNULLn keyword if any */
       unsigned long nullval,         /* I - set null pixels, if nullcheck = 1   */
                char *nullarray,      /* I - bad pixel array, if nullcheck = 2   */
                int  *anynull,        /* O - set to 1 if any pixels are null     */
       unsigned long *output,         /* O - array of converted pixels           */
                int *status)          /* IO - error status                       */
    /*
      Copy input to output following reading of the input from a FITS file.
      Check for null values and do datatype conversion and scaling if required.
      The nullcheck code value determines how any null values in the input array
      are treated.  A null value is an input pixel that is equal to tnull.  If 
      nullcheck = 0, then no checking for nulls is performed and any null values
      will be transformed just like any other pixel.  If nullcheck = 1, then the
      output pixel will be set = nullval if the corresponding input pixel is null.
      If nullcheck = 2, then if the pixel is null then the corresponding value of
      nullarray will be set to 1; the value of nullarray for non-null pixels 
      will = 0.  The anynull parameter will be set = 1 if any of the returned
      pixels are null, otherwise anynull will be returned with a value = 0;
    */
    {
        long ii;
        double dvalue;
    
        if (nullcheck == 0)     /* no null checking required */
        {
            if (scale == 1. && zero == 0.)      /* no scaling */
            {       
                for (ii = 0; ii < ntodo; ii++)
                {
                    if (input[ii] < 0)
                    {
                        *status = OVERFLOW_ERR;
                        output[ii] = 0;
                    }
                    else
                        output[ii] = (unsigned long) input[ii];
                }
            }
            else             /* must scale the data */
            {
                for (ii = 0; ii < ntodo; ii++)
                {
                    dvalue = input[ii] * scale + zero;
    
                    if (dvalue < DULONG_MIN)
                    {
                        *status = OVERFLOW_ERR;
                        output[ii] = 0;
                    }
                    else if (dvalue > DULONG_MAX)
                    {
                        *status = OVERFLOW_ERR;
                        output[ii] = ULONG_MAX;
                    }
                    else
                        output[ii] = (unsigned long) dvalue;
                }
            }
        }
        else        /* must check for null values */
        {
            if (scale == 1. && zero == 0.)  /* no scaling */
            {       
                for (ii = 0; ii < ntodo; ii++)
                {
                    if (input[ii] == tnull)
                    {
                        *anynull = 1;
                        if (nullcheck == 1)
                            output[ii] = nullval;
                        else
                            nullarray[ii] = 1;
                    }
                    else
                    {
                        if (input[ii] < 0)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = 0;
                        }
                        else
                            output[ii] = (unsigned long) input[ii];
                    }
                }
            }
            else                  /* must scale the data */
            {
                for (ii = 0; ii < ntodo; ii++)
                {
                    if (input[ii] == tnull)
                    {
                        *anynull = 1;
                        if (nullcheck == 1)
                            output[ii] = nullval;
                        else
                            nullarray[ii] = 1;
                    }
                    else
                    {
                        dvalue = input[ii] * scale + zero;
    
                        if (dvalue < DULONG_MIN)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = 0;
                        }
                        else if (dvalue > DULONG_MAX)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = ULONG_MAX;
                        }
                        else
                            output[ii] = (unsigned long) dvalue;
                    }
                }
            }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int fffi4u4(INT32BIT *input,      /* I - array of values to be converted     */
                long ntodo,           /* I - number of elements in the array     */
                double scale,         /* I - FITS TSCALn or BSCALE value         */
                double zero,          /* I - FITS TZEROn or BZERO  value         */
                int nullcheck,        /* I - null checking code; 0 = don't check */
                                      /*     1:set null pixels = nullval         */
                                      /*     2: if null pixel, set nullarray = 1 */
                INT32BIT tnull,       /* I - value of FITS TNULLn keyword if any */
       unsigned long nullval,         /* I - set null pixels, if nullcheck = 1   */
                char *nullarray,      /* I - bad pixel array, if nullcheck = 2   */
                int  *anynull,        /* O - set to 1 if any pixels are null     */
       unsigned long *output,         /* O - array of converted pixels           */
                int *status)          /* IO - error status                       */
    /*
      Copy input to output following reading of the input from a FITS file.
      Check for null values and do datatype conversion and scaling if required.
      The nullcheck code value determines how any null values in the input array
      are treated.  A null value is an input pixel that is equal to tnull.  If 
      nullcheck = 0, then no checking for nulls is performed and any null values
      will be transformed just like any other pixel.  If nullcheck = 1, then the
      output pixel will be set = nullval if the corresponding input pixel is null.
      If nullcheck = 2, then if the pixel is null then the corresponding value of
      nullarray will be set to 1; the value of nullarray for non-null pixels 
      will = 0.  The anynull parameter will be set = 1 if any of the returned
      pixels are null, otherwise anynull will be returned with a value = 0;
    
      Process the array of data in reverse order, to handle the case where
      the input data is 4-bytes and the output is  8-bytes and the conversion
      is being done in place in the same array.
    */
    {
        long ii;
        double dvalue;
    
        if (nullcheck == 0)     /* no null checking required */
        {
            if (scale == 1. && zero == 2147483648.)
            {       
               /* Instead of adding 2147483648, it is more efficient */
               /* to just flip the sign bit with the XOR operator */
    
                for (ii = ntodo - 1; ii >= 0; ii--)
                   output[ii] =  ( *(unsigned int *) &input[ii] ) ^ 0x80000000;
            }
            else if (scale == 1. && zero == 0.)      /* no scaling */
            {       
                for (ii = ntodo - 1; ii >= 0; ii--)
                {
                    if (input[ii] < 0)
                    {
                        *status = OVERFLOW_ERR;
                        output[ii] = 0;
                    }
                    else
                        output[ii] = (unsigned long) input[ii]; /* copy input */
                }
            }
            else             /* must scale the data */
            {
                for (ii = ntodo - 1; ii >= 0; ii--)
                {
                    dvalue = input[ii] * scale + zero;
    
                    if (dvalue < DULONG_MIN)
                    {
                        *status = OVERFLOW_ERR;
                        output[ii] = 0;
                    }
                    else if (dvalue > DULONG_MAX)
                    {
                        *status = OVERFLOW_ERR;
                        output[ii] = ULONG_MAX;
                    }
                    else
                        output[ii] = (unsigned long) dvalue;
                }
            }
        }
        else        /* must check for null values */
        {
            if (scale == 1. && zero == 2147483648.) 
            {       
                for (ii = ntodo - 1; ii >= 0; ii--)
                {
                    if (input[ii] == tnull)
                    {
                        *anynull = 1;
                        if (nullcheck == 1)
                            output[ii] = nullval;
                        else
                            nullarray[ii] = 1;
                    }
                    else
                       output[ii] =  ( *(unsigned int *) &input[ii] ) ^ 0x80000000;
                }
            }
            else if (scale == 1. && zero == 0.)      /* no scaling */
            {       
                for (ii = ntodo - 1; ii >= 0; ii--)
                {
                    if (input[ii] == tnull)
                    {
                        *anynull = 1;
                        if (nullcheck == 1)
                            output[ii] = nullval;
                        else
                            nullarray[ii] = 1;
                    }
                    else if (input[ii] < 0)
                    {
                        *status = OVERFLOW_ERR;
                        output[ii] = 0;
                    }
                    else
                        output[ii] = (unsigned long) input[ii]; /* copy input */
                }
            }
            else                  /* must scale the data */
            {
                for (ii = ntodo - 1; ii >= 0; ii--)
                {
                    if (input[ii] == tnull)
                    {
                        *anynull = 1;
                        if (nullcheck == 1)
                            output[ii] = nullval;
                        else
                            nullarray[ii] = 1;
                    }
                    else
                    {
                        dvalue = input[ii] * scale + zero;
    
                        if (dvalue < DULONG_MIN)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = 0;
                        }
                        else if (dvalue > DULONG_MAX)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = ULONG_MAX;
                        }
                        else
                            output[ii] = (unsigned long) dvalue;
                    }
                }
            }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int fffi8u4(LONGLONG *input,      /* I - array of values to be converted     */
                long ntodo,           /* I - number of elements in the array     */
                double scale,         /* I - FITS TSCALn or BSCALE value         */
                double zero,          /* I - FITS TZEROn or BZERO  value         */
                int nullcheck,        /* I - null checking code; 0 = don't check */
                                      /*     1:set null pixels = nullval         */
                                      /*     2: if null pixel, set nullarray = 1 */
                LONGLONG tnull,       /* I - value of FITS TNULLn keyword if any */
       unsigned long nullval,         /* I - set null pixels, if nullcheck = 1   */
                char *nullarray,      /* I - bad pixel array, if nullcheck = 2   */
                int  *anynull,        /* O - set to 1 if any pixels are null     */
       unsigned long *output,         /* O - array of converted pixels           */
                int *status)          /* IO - error status                       */
    /*
      Copy input to output following reading of the input from a FITS file.
      Check for null values and do datatype conversion and scaling if required.
      The nullcheck code value determines how any null values in the input array
      are treated.  A null value is an input pixel that is equal to tnull.  If 
      nullcheck = 0, then no checking for nulls is performed and any null values
      will be transformed just like any other pixel.  If nullcheck = 1, then the
      output pixel will be set = nullval if the corresponding input pixel is null.
      If nullcheck = 2, then if the pixel is null then the corresponding value of
      nullarray will be set to 1; the value of nullarray for non-null pixels 
      will = 0.  The anynull parameter will be set = 1 if any of the returned
      pixels are null, otherwise anynull will be returned with a value = 0;
    */
    {
        long ii;
        double dvalue;
    
        if (nullcheck == 0)     /* no null checking required */
        {
            if (scale == 1. && zero == 0.)      /* no scaling */
            {       
                for (ii = 0; ii < ntodo; ii++)
                {
                    if (input[ii] < 0)
                    {
                        *status = OVERFLOW_ERR;
                        output[ii] = 0;
                    }
                    else if (input[ii] > ULONG_MAX)
                    {
                        *status = OVERFLOW_ERR;
                        output[ii] = ULONG_MAX;
                    }
                    else
                        output[ii] = (unsigned long) input[ii];
                }
            }
            else             /* must scale the data */
            {
                for (ii = 0; ii < ntodo; ii++)
                {
                    dvalue = input[ii] * scale + zero;
    
                    if (dvalue < DULONG_MIN)
                    {
                        *status = OVERFLOW_ERR;
                        output[ii] = 0;
                    }
                    else if (dvalue > DULONG_MAX)
                    {
                        *status = OVERFLOW_ERR;
                        output[ii] = ULONG_MAX;
                    }
                    else
                        output[ii] = (unsigned long) dvalue;
                }
            }
        }
        else        /* must check for null values */
        {
            if (scale == 1. && zero == 0.)  /* no scaling */
            {       
                for (ii = 0; ii < ntodo; ii++)
                {
                    if (input[ii] == tnull)
                    {
                        *anynull = 1;
                        if (nullcheck == 1)
                            output[ii] = nullval;
                        else
                            nullarray[ii] = 1;
                    }
                    else
                    {
                        if (input[ii] < 0)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = 0;
                        }
                        else if (input[ii] > ULONG_MAX)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = ULONG_MAX;
                        }
                        else
                            output[ii] = (unsigned long) input[ii];
                    }
                }
            }
            else                  /* must scale the data */
            {
                for (ii = 0; ii < ntodo; ii++)
                {
                    if (input[ii] == tnull)
                    {
                        *anynull = 1;
                        if (nullcheck == 1)
                            output[ii] = nullval;
                        else
                            nullarray[ii] = 1;
                    }
                    else
                    {
                        dvalue = input[ii] * scale + zero;
    
                        if (dvalue < DULONG_MIN)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = 0;
                        }
                        else if (dvalue > DULONG_MAX)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = ULONG_MAX;
                        }
                        else
                            output[ii] = (unsigned long) dvalue;
                    }
                }
            }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int fffr4u4(float *input,         /* I - array of values to be converted     */
                long ntodo,           /* I - number of elements in the array     */
                double scale,         /* I - FITS TSCALn or BSCALE value         */
                double zero,          /* I - FITS TZEROn or BZERO  value         */
                int nullcheck,        /* I - null checking code; 0 = don't check */
                                      /*     1:set null pixels = nullval         */
                                      /*     2: if null pixel, set nullarray = 1 */
       unsigned long nullval,         /* I - set null pixels, if nullcheck = 1   */
                char *nullarray,      /* I - bad pixel array, if nullcheck = 2   */
                int  *anynull,        /* O - set to 1 if any pixels are null     */
       unsigned long *output,         /* O - array of converted pixels           */
                int *status)          /* IO - error status                       */
    /*
      Copy input to output following reading of the input from a FITS file.
      Check for null values and do datatype conversion and scaling if required.
      The nullcheck code value determines how any null values in the input array
      are treated.  A null value is an input pixel that is equal to NaN.  If 
      nullcheck = 0, then no checking for nulls is performed and any null values
      will be transformed just like any other pixel.  If nullcheck = 1, then the
      output pixel will be set = nullval if the corresponding input pixel is null.
      If nullcheck = 2, then if the pixel is null then the corresponding value of
      nullarray will be set to 1; the value of nullarray for non-null pixels 
      will = 0.  The anynull parameter will be set = 1 if any of the returned
      pixels are null, otherwise anynull will be returned with a value = 0;
    */
    {
        long ii;
        double dvalue;
        short *sptr, iret;
    
        if (nullcheck == 0)     /* no null checking required */
        {
            if (scale == 1. && zero == 0.)      /* no scaling */
            {       
                for (ii = 0; ii < ntodo; ii++)
                {
                    if (input[ii] < DULONG_MIN)
                    {
                        *status = OVERFLOW_ERR;
                        output[ii] = 0;
                    }
                    else if (input[ii] > DULONG_MAX)
                    {
                        *status = OVERFLOW_ERR;
                        output[ii] = ULONG_MAX;
                    }
                    else
                        output[ii] = (unsigned long) input[ii];
                }
            }
            else             /* must scale the data */
            {
                for (ii = 0; ii < ntodo; ii++)
                {
                    dvalue = input[ii] * scale + zero;
    
                    if (dvalue < DULONG_MIN)
                    {
                        *status = OVERFLOW_ERR;
                        output[ii] = 0;
                    }
                    else if (dvalue > DULONG_MAX)
                    {
                        *status = OVERFLOW_ERR;
                        output[ii] = ULONG_MAX;
                    }
                    else
                        output[ii] = (unsigned long) dvalue;
                }
            }
        }
        else        /* must check for null values */
        {
            sptr = (short *) input;
    
    #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS
            sptr++;       /* point to MSBs */
    #endif
    
            if (scale == 1. && zero == 0.)  /* no scaling */
            {       
                for (ii = 0; ii < ntodo; ii++, sptr += 2)
                {
                  if (0 != (iret = fnan(*sptr) ) )  /* test for NaN or underflow */
                  {
                      if (iret == 1)  /* is it a NaN? */
                      {
                        *anynull = 1;
                        if (nullcheck == 1)
                            output[ii] = nullval;
                        else
                            nullarray[ii] = 1;
                      }
                      else            /* it's an underflow */
                         output[ii] = 0;
                  }
                  else
                    {
                        if (input[ii] < DULONG_MIN)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = 0;
                        }
                        else if (input[ii] > DULONG_MAX)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = ULONG_MAX;
                        }
                        else
                            output[ii] = (unsigned long) input[ii];
                    }
                }
            }
            else                  /* must scale the data */
            {
                for (ii = 0; ii < ntodo; ii++, sptr += 2)
                {
                  if (0 != (iret = fnan(*sptr) ) )  /* test for NaN or underflow */
                  {
                      if (iret == 1)  /* is it a NaN? */
                      {  
                        *anynull = 1;
                        if (nullcheck == 1)
                            output[ii] = nullval;
                        else
                            nullarray[ii] = 1;
                      }
                      else            /* it's an underflow */
                      { 
                        if (zero < DULONG_MIN)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = 0;
                        }
                        else if (zero > DULONG_MAX)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = ULONG_MAX;
                        }
                        else
                          output[ii] = (unsigned long) zero;
                      }
                  }
                  else
                    {
                        dvalue = input[ii] * scale + zero;
    
                        if (dvalue < DULONG_MIN)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = 0;
                        }
                        else if (dvalue > DULONG_MAX)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = ULONG_MAX;
                        }
                        else
                            output[ii] = (unsigned long) dvalue;
                    }
                }
            }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int fffr8u4(double *input,        /* I - array of values to be converted     */
                long ntodo,           /* I - number of elements in the array     */
                double scale,         /* I - FITS TSCALn or BSCALE value         */
                double zero,          /* I - FITS TZEROn or BZERO  value         */
                int nullcheck,        /* I - null checking code; 0 = don't check */
                                      /*     1:set null pixels = nullval         */
                                      /*     2: if null pixel, set nullarray = 1 */
       unsigned long nullval,         /* I - set null pixels, if nullcheck = 1   */
                char *nullarray,      /* I - bad pixel array, if nullcheck = 2   */
                int  *anynull,        /* O - set to 1 if any pixels are null     */
       unsigned long *output,         /* O - array of converted pixels           */
                int *status)          /* IO - error status                       */
    /*
      Copy input to output following reading of the input from a FITS file.
      Check for null values and do datatype conversion and scaling if required.
      The nullcheck code value determines how any null values in the input array
      are treated.  A null value is an input pixel that is equal to NaN.  If 
      nullcheck = 0, then no checking for nulls is performed and any null values
      will be transformed just like any other pixel.  If nullcheck = 1, then the
      output pixel will be set = nullval if the corresponding input pixel is null.
      If nullcheck = 2, then if the pixel is null then the corresponding value of
      nullarray will be set to 1; the value of nullarray for non-null pixels 
      will = 0.  The anynull parameter will be set = 1 if any of the returned
      pixels are null, otherwise anynull will be returned with a value = 0;
    */
    {
        long ii;
        double dvalue;
        short *sptr, iret;
    
        if (nullcheck == 0)     /* no null checking required */
        {
            if (scale == 1. && zero == 0.)      /* no scaling */
            {       
                for (ii = 0; ii < ntodo; ii++)
                {
                    if (input[ii] < DULONG_MIN)
                    {
                        *status = OVERFLOW_ERR;
                        output[ii] = 0;
                    }
                    else if (input[ii] > DULONG_MAX)
                    {
                        *status = OVERFLOW_ERR;
                        output[ii] = ULONG_MAX;
                    }
                    else
                        output[ii] = (unsigned long) input[ii];
                }
            }
            else             /* must scale the data */
            {
                for (ii = 0; ii < ntodo; ii++)
                {
                    dvalue = input[ii] * scale + zero;
    
                    if (dvalue < DULONG_MIN)
                    {
                        *status = OVERFLOW_ERR;
                        output[ii] = 0;
                    }
                    else if (dvalue > DULONG_MAX)
                    {
                        *status = OVERFLOW_ERR;
                        output[ii] = ULONG_MAX;
                    }
                    else
                        output[ii] = (unsigned long) dvalue;
                }
            }
        }
        else        /* must check for null values */
        {
            sptr = (short *) input;
    
    #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS
            sptr += 3;       /* point to MSBs */
    #endif
            if (scale == 1. && zero == 0.)  /* no scaling */
            {       
                for (ii = 0; ii < ntodo; ii++, sptr += 4)
                {
                  if (0 != (iret = dnan(*sptr)) )  /* test for NaN or underflow */
                  {
                      if (iret == 1)  /* is it a NaN? */
                      {
                        *anynull = 1;
                        if (nullcheck == 1)
                            output[ii] = nullval;
                        else
                            nullarray[ii] = 1;
                      }
                      else            /* it's an underflow */
                         output[ii] = 0;
                  }
                  else
                    {
                        if (input[ii] < DULONG_MIN)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = 0;
                        }
                        else if (input[ii] > DULONG_MAX)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = ULONG_MAX;
                        }
                        else
                            output[ii] = (unsigned long) input[ii];
                    }
                }
            }
            else                  /* must scale the data */
            {
                for (ii = 0; ii < ntodo; ii++, sptr += 4)
                {
                  if (0 != (iret = dnan(*sptr)) )  /* test for NaN or underflow */
                  {
                      if (iret == 1)  /* is it a NaN? */
                      {  
                        *anynull = 1;
                        if (nullcheck == 1)
                            output[ii] = nullval;
                        else
                            nullarray[ii] = 1;
                      }
                      else            /* it's an underflow */
                      { 
                        if (zero < DULONG_MIN)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = 0;
                        }
                        else if (zero > DULONG_MAX)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = ULONG_MAX;
                        }
                        else
                          output[ii] = (unsigned long) zero;
                      }
                  }
                  else
                    {
                        dvalue = input[ii] * scale + zero;
    
                        if (dvalue < DULONG_MIN)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = 0;
                        }
                        else if (dvalue > DULONG_MAX)
                        {
                            *status = OVERFLOW_ERR;
                            output[ii] = ULONG_MAX;
                        }
                        else
                            output[ii] = (unsigned long) dvalue;
                    }
                }
            }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int fffstru4(char *input,         /* I - array of values to be converted     */
                long ntodo,           /* I - number of elements in the array     */
                double scale,         /* I - FITS TSCALn or BSCALE value         */
                double zero,          /* I - FITS TZEROn or BZERO  value         */
                long twidth,          /* I - width of each substring of chars    */
                double implipower,    /* I - power of 10 of implied decimal      */
                int nullcheck,        /* I - null checking code; 0 = don't check */
                                      /*     1:set null pixels = nullval         */
                                      /*     2: if null pixel, set nullarray = 1 */
                char  *snull,         /* I - value of FITS null string, if any   */
       unsigned long nullval,         /* I - set null pixels, if nullcheck = 1   */
                char *nullarray,      /* I - bad pixel array, if nullcheck = 2   */
                int  *anynull,        /* O - set to 1 if any pixels are null     */
       unsigned long *output,         /* O - array of converted pixels           */
                int *status)          /* IO - error status                       */
    /*
      Copy input to output following reading of the input from a FITS file. Check
      for null values and do scaling if required. The nullcheck code value
      determines how any null values in the input array are treated. A null
      value is an input pixel that is equal to snull.  If nullcheck= 0, then
      no special checking for nulls is performed.  If nullcheck = 1, then the
      output pixel will be set = nullval if the corresponding input pixel is null.
      If nullcheck = 2, then if the pixel is null then the corresponding value of
      nullarray will be set to 1; the value of nullarray for non-null pixels 
      will = 0.  The anynull parameter will be set = 1 if any of the returned
      pixels are null, otherwise anynull will be returned with a value = 0;
    */
    {
        int nullen;
        long ii;
        double dvalue;
        char *cstring, message[81];
        char *cptr, *tpos;
        char tempstore, chrzero = '0';
        double val, power;
        int exponent, sign, esign, decpt;
    
        nullen = strlen(snull);
        cptr = input;  /* pointer to start of input string */
        for (ii = 0; ii < ntodo; ii++)
        {
          cstring = cptr;
          /* temporarily insert a null terminator at end of the string */
          tpos = cptr + twidth;
          tempstore = *tpos;
          *tpos = 0;
    
          /* check if null value is defined, and if the    */
          /* column string is identical to the null string */
          if (snull[0] != ASCII_NULL_UNDEFINED && 
             !strncmp(snull, cptr, nullen) )
          {
            if (nullcheck)  
            {
              *anynull = 1;    
              if (nullcheck == 1)
                output[ii] = nullval;
              else
                nullarray[ii] = 1;
            }
            cptr += twidth;
          }
          else
          {
            /* value is not the null value, so decode it */
            /* remove any embedded blank characters from the string */
    
            decpt = 0;
            sign = 1;
            val  = 0.;
            power = 1.;
            exponent = 0;
            esign = 1;
    
            while (*cptr == ' ')               /* skip leading blanks */
               cptr++;
    
            if (*cptr == '-' || *cptr == '+')  /* check for leading sign */
            {
              if (*cptr == '-')
                 sign = -1;
    
              cptr++;
    
              while (*cptr == ' ')         /* skip blanks between sign and value */
                cptr++;
            }
    
            while (*cptr >= '0' && *cptr <= '9')
            {
              val = val * 10. + *cptr - chrzero;  /* accumulate the value */
              cptr++;
    
              while (*cptr == ' ')         /* skip embedded blanks in the value */
                cptr++;
            }
    
            if (*cptr == '.' || *cptr == ',')       /* check for decimal point */
            {
              decpt = 1;       /* set flag to show there was a decimal point */
              cptr++;
              while (*cptr == ' ')         /* skip any blanks */
                cptr++;
    
              while (*cptr >= '0' && *cptr <= '9')
              {
                val = val * 10. + *cptr - chrzero;  /* accumulate the value */
                power = power * 10.;
                cptr++;
    
                while (*cptr == ' ')         /* skip embedded blanks in the value */
                  cptr++;
              }
            }
    
            if (*cptr == 'E' || *cptr == 'D')  /* check for exponent */
            {
              cptr++;
              while (*cptr == ' ')         /* skip blanks */
                  cptr++;
      
              if (*cptr == '-' || *cptr == '+')  /* check for exponent sign */
              {
                if (*cptr == '-')
                   esign = -1;
    
                cptr++;
    
                while (*cptr == ' ')        /* skip blanks between sign and exp */
                  cptr++;
              }
    
              while (*cptr >= '0' && *cptr <= '9')
              {
                exponent = exponent * 10 + *cptr - chrzero;  /* accumulate exp */
                cptr++;
    
                while (*cptr == ' ')         /* skip embedded blanks */
                  cptr++;
              }
            }
    
            if (*cptr  != 0)  /* should end up at the null terminator */
            {
              sprintf(message, "Cannot read number from ASCII table");
              ffpmsg(message);
              sprintf(message, "Column field = %s.", cstring);
              ffpmsg(message);
              /* restore the char that was overwritten by the null */
              *tpos = tempstore;
              return(*status = BAD_C2D);
            }
    
            if (!decpt)  /* if no explicit decimal, use implied */
               power = implipower;
    
            dvalue = (sign * val / power) * pow(10., (double) (esign * exponent));
    
            dvalue = dvalue * scale + zero;   /* apply the scaling */
    
            if (dvalue < DULONG_MIN)
            {
                *status = OVERFLOW_ERR;
                output[ii] = 0;
            }
            else if (dvalue > DULONG_MAX)
            {
                *status = OVERFLOW_ERR;
                output[ii] = ULONG_MAX;
            }
            else
                output[ii] = (unsigned long) dvalue;
          }
          /* restore the char that was overwritten by the null */
          *tpos = tempstore;
        }
        return(*status);
    }
    healpy-1.8.1/cfitsio/iter_image.c0000654000175000017530000000600412272000775017326 0ustar  zoncaplanck00000000000000#include 
    #include 
    #include 
    #include "fitsio.h"
    
    /*
      This program illustrates how to use the CFITSIO iterator function.
      It reads and modifies the input 'iter_image.fit' image file by setting
      all the pixel values to zero (DESTROYING THE ORIGINAL IMAGE!!!)
    */
    main()
    {
        extern zero_image(); /* external work function is passed to the iterator */
        fitsfile *fptr;
        iteratorCol cols[3];  /* structure used by the iterator function */
        int n_cols;
        long rows_per_loop, offset;
    
        int status, nkeys, keypos, hdutype, ii, jj;
        char filename[]  = "iter_image.fit";     /* name of rate FITS file */
    
        status = 0; 
    
        fits_open_file(&fptr, filename, READWRITE, &status); /* open file */
    
    
        n_cols = 1;
    
        /* define input column structure members for the iterator function */
        fits_iter_set_file(&cols[0], fptr);
        fits_iter_set_iotype(&cols[0], InputOutputCol);
        fits_iter_set_datatype(&cols[0], 0);
    
        rows_per_loop = 0;  /* use default optimum number of rows */
        offset = 0;         /* process all the rows */
    
        /* apply the rate function to each row of the table */
        printf("Calling iterator function...%d\n", status);
    
        fits_iterate_data(n_cols, cols, offset, rows_per_loop,
                          zero_image, 0L, &status);
    
        fits_close_file(fptr, &status);      /* all done */
    
        if (status)
            fits_report_error(stderr, status);  /* print out error messages */
    
        return(status);
    }
    /*--------------------------------------------------------------------------*/
    int zero_image(long totalrows, long offset, long firstrow, long nrows,
                 int ncols, iteratorCol *cols, void *user_strct ) 
    
    /*
       Sample iterator function that calculates the output flux 'rate' column
       by dividing the input 'counts' by the 'time' column.
       It also applies a constant deadtime correction factor if the 'deadtime'
       keyword exists.  Finally, this creates or updates the 'LIVETIME'
       keyword with the sum of all the individual integration times.
    */
    {
        int ii, status = 0;
    
        /* declare variables static to preserve their values between calls */
        static int *counts;
    
        /*--------------------------------------------------------*/
        /*  Initialization procedures: execute on the first call  */
        /*--------------------------------------------------------*/
        if (firstrow == 1)
        {
           if (ncols != 1)
               return(-1);  /* number of columns incorrect */
    
           /* assign the input pointers to the appropriate arrays and null ptrs*/
           counts       = (int *)  fits_iter_get_array(&cols[0]);
        }
    
        /*--------------------------------------------*/
        /*  Main loop: process all the rows of data */
        /*--------------------------------------------*/
    
        /*  NOTE: 1st element of array is the null pixel value!  */
        /*  Loop from 1 to nrows, not 0 to nrows - 1.  */
    
        for (ii = 1; ii <= nrows; ii++)
        {
           counts[ii] = 1.;
        }
        printf("firstrows, nrows = %d %d\n", firstrow, nrows);
        
        return(0);  /* return successful status */
    }
    healpy-1.8.1/cfitsio/drvrgsiftp.h0000654000175000017530000000142312272000775017420 0ustar  zoncaplanck00000000000000#ifndef _GSIFTP_H
    #define _GSIFTP_H
    
    int gsiftp_init(void);
    int gsiftp_setoptions(int options);
    int gsiftp_getoptions(int *options);
    int gsiftp_getversion(int *version);
    int gsiftp_shutdown(void);
    int gsiftp_checkfile(char *urltype, char *infile, char *outfile);
    int gsiftp_open(char *filename, int rwmode, int *driverhandle);
    int gsiftp_create(char *filename, int *driverhandle);
    int gsiftp_truncate(int driverhandle, LONGLONG filesize);
    int gsiftp_size(int driverhandle, LONGLONG *filesize);
    int gsiftp_close(int driverhandle);
    int gsiftp_remove(char *filename);
    int gsiftp_flush(int driverhandle);
    int gsiftp_seek(int driverhandle, LONGLONG offset);
    int gsiftp_read (int driverhandle, void *buffer, long nbytes);
    int gsiftp_write(int driverhandle, void *buffer, long nbytes);
    
    #endif
    healpy-1.8.1/cfitsio/fpackutil.c0000654000175000017530000021770412272000775017216 0ustar  zoncaplanck00000000000000/* FPACK utility routines
       R. Seaman, NOAO & W. Pence, NASA/GSFC
    */
    
    #include 
    #include 
    #include 
    #include 
    
    /* #include  "bzlib.h"  only for experimental purposes */
    
    #if defined(unix) || defined(__unix__)  || defined(__unix)
    #include 
    #endif
    
    #include 
    #include "fitsio.h"
    #include "fpack.h"
    
    /* these filename buffer are used to delete temporary files */
    /* in case the program is aborted */
    char tempfilename[SZ_STR];
    char tempfilename2[SZ_STR];
    char tempfilename3[SZ_STR];
    
    /* nearest integer function */
    # define NINT(x)  ((x >= 0.) ? (int) (x + 0.5) : (int) (x - 0.5))
    # define NSHRT(x) ((x >= 0.) ? (short) (x + 0.5) : (short) (x - 0.5))
    
    /* define variables for measuring elapsed time */
    clock_t scpu, ecpu;
    long startsec;   /* start of elapsed time interval */
    int startmilli;  /* start of elapsed time interval */
    
    /*  CLOCKS_PER_SEC should be defined by most compilers */
    #if defined(CLOCKS_PER_SEC)
    #define CLOCKTICKS CLOCKS_PER_SEC
    #else
    /* on SUN OS machine, CLOCKS_PER_SEC is not defined, so set its value */
    #define CLOCKTICKS 1000000
    #endif
    
    FILE *outreport;
    
    /* dimension of central image area to be sampled for test statistics */
    int XSAMPLE = 4100;
    int YSAMPLE = 4100;
    
    int fp_msg (char *msg)
    {
            printf ("%s", msg);
            return(0);
    }
    /*--------------------------------------------------------------------------*/
    int fp_noop (void)
    {
            fp_msg ("Input and output files are unchanged.\n");
            return(0);
    }
    /*--------------------------------------------------------------------------*/
    void fp_abort_output (fitsfile *infptr, fitsfile *outfptr, int stat)
    {
    	int status = 0, hdunum;
    	char  msg[SZ_STR];
    
    	fits_file_name(infptr, tempfilename, &status);
    	fits_get_hdu_num(infptr, &hdunum);
    	
            fits_close_file (infptr, &status);
    
    	sprintf(msg, "Error processing file: %s\n", tempfilename);
    	fp_msg (msg);
    	sprintf(msg, "  in HDU number %d\n", hdunum);
    	fp_msg (msg);
    
    	fits_report_error (stderr, stat);
    
    	if (outfptr) {
    	    fits_delete_file(outfptr, &status);
    	    fp_msg ("Input file is unchanged.\n");
    	}
    
    	exit (stat); 
    }
    /*--------------------------------------------------------------------------*/
    int fp_version (void)
    {
            float version;
            char cfitsioversion[40];
    
            fp_msg (FPACK_VERSION);
            fits_get_version(&version);
            sprintf(cfitsioversion, " CFITSIO version %5.3f", version);
            fp_msg(cfitsioversion);
            fp_msg ("\n");
            return(0);
    }
    /*--------------------------------------------------------------------------*/
    int fp_access (char *filename)
    {
    	/* test if a file exists */
    	
    	FILE *diskfile;
    	
    	diskfile = fopen(filename, "r");
    
    	if (diskfile) {
    		fclose(diskfile);
    		return(0);
    	} else {
    	        return(-1);
    	}
    }
    /*--------------------------------------------------------------------------*/
    int fp_tmpnam(char *suffix, char *rootname, char *tmpnam)
    {
    	/* create temporary file name */
    
    	int maxtry = 30, i1 = 0, ii;
    
    	if (strlen(suffix) + strlen(rootname) > SZ_STR-5) {
    	    fp_msg ("Error: filename is too long to create tempory file\n"); exit (-1);
    	}
    
    	strcpy (tmpnam, rootname);  /* start with rootname */
    	strcat(tmpnam, suffix);     /* append the suffix */
    
    	maxtry = SZ_STR - strlen(tmpnam) - 1;
    
            for (ii = 0; ii < maxtry; ii++) {
    		if (fp_access(tmpnam)) break;  /* good, the file does not exist */
    		strcat(tmpnam, "x");  /* append an x to the name, and try again */
    	}
    
    	if (ii == maxtry) {
    		fp_msg ("\nCould not create temporary file name:\n");
    		fp_msg (tmpnam);
    		fp_msg ("\n");
    		exit (-1);
    	}
    
            return(0);
    }
    /*--------------------------------------------------------------------------*/
    int fp_init (fpstate *fpptr)
    {
    	int	ii;
    
    	fpptr->comptype = RICE_1;
    	fpptr->quantize_level = DEF_QLEVEL;
            fpptr->no_dither = 0;
            fpptr->dither_method = 1;
            fpptr->dither_offset = 0;
            fpptr->int_to_float = 0;
    
    	/* thresholds when using the -i2f flag */
            fpptr->n3ratio = 2.0;  /* minimum ratio of image noise sigma / q */
            fpptr->n3min = 6.;     /* minimum noise sigma. */
    
    	fpptr->scale = DEF_HCOMP_SCALE;
    	fpptr->smooth = DEF_HCOMP_SMOOTH;
    	fpptr->rescale_noise = DEF_RESCALE_NOISE;
    	fpptr->ntile[0] = (long) -1;	/* -1 means extent of axis */
    
    	for (ii=1; ii < MAX_COMPRESS_DIM; ii++)
    	    fpptr->ntile[ii] = (long) 1;
    
    	fpptr->to_stdout = 0;
    	fpptr->listonly = 0;
    	fpptr->clobber = 0;
    	fpptr->delete_input = 0;
    	fpptr->do_not_prompt = 0;
    	fpptr->do_checksums = 1;
    	fpptr->do_gzip_file = 0;
    	fpptr->do_tables = 0;  /* this is intended for testing purposes  */
    	fpptr->do_images = 1;  /* can be turned off with -tableonly switch */
    	fpptr->test_all = 0;
    	fpptr->verbose = 0;
    
    	fpptr->prefix[0] = 0;
    	fpptr->extname[0] = 0;
    	fpptr->delete_suffix = 0;
    	fpptr->outfile[0] = 0;
    
    	fpptr->firstfile = 1;
    
    	/* magic number for initialization check, boolean for preflight
    	 */
    	fpptr->initialized = FP_INIT_MAGIC;
    	fpptr->preflight_checked = 0;
    	return(0);
    }
    /*--------------------------------------------------------------------------*/
    int fp_list (int argc, char *argv[], fpstate fpvar)
    {
    	fitsfile *infptr;
    	char	infits[SZ_STR], msg[SZ_STR];
    	int	hdunum, iarg, stat=0;
    	LONGLONG sizell;
    
    	if (fpvar.initialized != FP_INIT_MAGIC) {
    	    fp_msg ("Error: internal initialization error\n"); exit (-1);
    	}
    
    	for (iarg=fpvar.firstfile; iarg < argc; iarg++) {
    	    strncpy (infits, argv[iarg], SZ_STR);
    
    	    if (strchr (infits, '[') || strchr (infits, ']')) {
    		fp_msg ("Error: section/extension notation not supported: ");
    		fp_msg (infits); fp_msg ("\n"); exit (-1);
    	    }
    
    	    if (fp_access (infits) != 0) {
    		        fp_msg ("Error: can't find or read input file "); fp_msg (infits);
    		        fp_msg ("\n"); fp_noop (); exit (-1);
    	    }
    
    	    fits_open_file (&infptr, infits, READONLY, &stat);
    	    if (stat) { fits_report_error (stderr, stat); exit (stat); }
    
    	    /* move to the end of file, to get the total size in bytes */
    	    fits_get_num_hdus (infptr, &hdunum, &stat);
    	    fits_movabs_hdu (infptr, hdunum, NULL, &stat);
    	    fits_get_hduaddrll(infptr, NULL, NULL, &sizell, &stat);
    
    
    	    if (stat) { 
    	        fp_abort_output(infptr, NULL, stat);
    	    }
    
                sprintf (msg, "# %s (", infits); fp_msg (msg);
    
    #if defined(_MSC_VER)
        /* Microsoft Visual C++ 6.0 uses '%I64d' syntax  for 8-byte integers */
            sprintf(msg, "%I64d bytes)\n", sizell); fp_msg (msg);
    #elif (USE_LL_SUFFIX == 1)
            sprintf(msg, "%lld bytes)\n", sizell); fp_msg (msg);
    #else
            sprintf(msg, "%ld bytes)\n", sizell); fp_msg (msg);
    #endif
    	    fp_info_hdu (infptr);
    
    	    fits_close_file (infptr, &stat);
    	    if (stat) { fits_report_error (stderr, stat); exit (stat); }
    	}
    	return(0);
    }
    /*--------------------------------------------------------------------------*/
    int fp_info_hdu (fitsfile *infptr)
    {
    	long	naxes[9] = {1, 1, 1, 1, 1, 1, 1, 1, 1};
    	char	msg[SZ_STR], val[SZ_CARD], com[SZ_CARD];
            int     naxis=0, hdutype, bitpix, hdupos, stat=0, ii;
            unsigned long   datasum, hdusum;
    
    	fits_movabs_hdu (infptr, 1, NULL, &stat);
    	if (stat) { 
    	    fp_abort_output(infptr, NULL, stat);
    	}
    
    	for (hdupos=1; ! stat; hdupos++) {
    	    fits_get_hdu_type (infptr, &hdutype, &stat);
    	    if (stat) { 
    	        fp_abort_output(infptr, NULL, stat);
    	    }
    
    	    /* fits_get_hdu_type calls unknown extensions "IMAGE_HDU"
    	     * so consult XTENSION keyword itself
    	     */
    	    fits_read_keyword (infptr, "XTENSION", val, com, &stat);
    	    if (stat == KEY_NO_EXIST) {
    		/* in primary HDU which by definition is an "image" */
    		stat=0; /* clear for later error handling */
    
    	    } else if (stat) {
    	        fp_abort_output(infptr, NULL, stat);
    
    	    } else if (hdutype == IMAGE_HDU) {
    		/* that is, if XTENSION != "IMAGE" AND != "BINTABLE" */
    		if (strncmp (val+1, "IMAGE", 5) &&
    		    strncmp (val+1, "BINTABLE", 5)) {
    
    		     /* assign something other than any of these */
    		    hdutype = IMAGE_HDU + ASCII_TBL + BINARY_TBL;
    		}
    	    }
    
                fits_get_chksum(infptr, &datasum, &hdusum, &stat);
    
    	    if (hdutype == IMAGE_HDU) {
    		sprintf (msg, "  %d IMAGE", hdupos); fp_msg (msg);
                    sprintf (msg, " SUMS=%lu/%lu", (unsigned long) (~((int) hdusum)), datasum); fp_msg (msg);
    
    		fits_get_img_param (infptr, 9, &bitpix, &naxis, naxes, &stat);
    
                    sprintf (msg, " BITPIX=%d", bitpix); fp_msg (msg);
    
    		if (naxis == 0) {
                        sprintf (msg, " [no_pixels]"); fp_msg (msg);
    		} else if (naxis == 1) {
    		    sprintf (msg, " [%ld]", naxes[1]); fp_msg (msg);
    		} else {
    		    sprintf (msg, " [%ld", naxes[0]); fp_msg (msg);
    		    for (ii=1; ii < naxis; ii++) {
    			sprintf (msg, "x%ld", naxes[ii]); fp_msg (msg);
    		    }
    		    fp_msg ("]");
    		}
    
                    if (fits_is_compressed_image (infptr, &stat)) {
                        fits_read_keyword (infptr, "ZCMPTYPE", val, com, &stat);
    
                        /* allow for quote in keyword value */
                        if (! strncmp (val+1, "RICE_1", 6))
                            fp_msg (" tiled_rice\n");
                        else if (! strncmp (val+1, "GZIP_1", 6))
                            fp_msg (" tiled_gzip_1\n");
                        else if (! strncmp (val+1, "GZIP_2", 6))
                            fp_msg (" tiled_gzip_2\n");
                        else if (! strncmp (val+1, "PLIO_1", 6))
                            fp_msg (" tiled_plio\n");
                        else if (! strncmp (val+1, "HCOMPRESS_1", 11))
                            fp_msg (" tiled_hcompress\n");
                        else
                            fp_msg (" unknown\n");
    
                    } else
                        fp_msg (" not_tiled\n");
    
                } else if (hdutype == ASCII_TBL) {
                    sprintf (msg, "  %d ASCII_TBL", hdupos); fp_msg (msg);
                    sprintf (msg, " SUMS=%lu/%lu\n", (unsigned long) (~((int) hdusum)), datasum); fp_msg (msg);
    
                } else if (hdutype == BINARY_TBL) {
                    sprintf (msg, "  %d BINARY_TBL", hdupos); fp_msg (msg);
                    sprintf (msg, " SUMS=%lu/%lu\n", (unsigned long) (~((int) hdusum)), datasum); fp_msg (msg);
    
                } else {
                    sprintf (msg, "  %d OTHER", hdupos); fp_msg (msg);
                    sprintf (msg, " SUMS=%lu/%lu", (unsigned long) (~((int) hdusum), datasum)); fp_msg (msg);
                    sprintf (msg, " %s\n", val); fp_msg (msg);
                }
    
    	    fits_movrel_hdu (infptr, 1, NULL, &stat);
    	}
    	return(0);
    }
    
    /*--------------------------------------------------------------------------*/
    int fp_preflight (int argc, char *argv[], int unpack, fpstate *fpptr)
    {
    	char	infits[SZ_STR], outfits[SZ_STR];
    	int	iarg, namelen, nfiles = 0;
    
    	if (fpptr->initialized != FP_INIT_MAGIC) {
    	    fp_msg ("Error: internal initialization error\n"); exit (-1);
    	}
    
    	for (iarg=fpptr->firstfile; iarg < argc; iarg++) {
    
                outfits[0] = '\0';
    	    
                if (strlen(argv[iarg]) > SZ_STR - 4) {  /* allow for .fz or .gz suffix */
    		    fp_msg ("Error: input file name\n   "); fp_msg (argv[iarg]);
    		    fp_msg ("\n   is too long\n"); fp_noop (); exit (-1);
    	    }
    
    	    strncpy (infits, argv[iarg], SZ_STR);
    	    if (infits[0] == '-' && infits[1] != '\0') {  
    	         /* don't interpret this as intending to read input file from stdin */
    		    fp_msg ("Error: invalid input file name\n   "); fp_msg (argv[iarg]);
    		    fp_msg ("\n"); fp_noop (); exit (-1);
    	    }
    
    	    if (strchr (infits, '[') || strchr (infits, ']')) {
    		fp_msg ("Error: section/extension notation not supported: ");
    		fp_msg (infits); fp_msg ("\n"); fp_noop (); exit (-1);
    	    }
    	    
                if (unpack) {
    	  	/* ********** This section applies to funpack ************ */
    
    	      /* check that input file  exists */
    	      if (infits[0] != '-') {  /* if not reading from stdin stream */
    	         if (fp_access (infits) != 0) {  /* if not, then check if */
    		    strcat(infits, ".fz");       /* a .fz version exsits */
    	            if (fp_access (infits) != 0) {
                            namelen = strlen(infits);
                            infits[namelen - 3] = '\0';  /* remove the .fz suffix */
    		        fp_msg ("Error: can't find or read input file "); fp_msg (infits);
    		        fp_msg ("\n"); fp_noop (); exit (-1);
                        }
    	         } else {   /* make sure a .fz version of the same file doesn't exist */
                        namelen = strlen(infits);
    		    strcat(infits, ".fz");   
    	            if (fp_access (infits) == 0) {
                            infits[namelen] = '\0';  /* remove the .fz suffix */
    		        fp_msg ("Error: ambiguous input file name.  Which file should be unpacked?:\n  ");
    		        fp_msg (infits); fp_msg ("\n  "); 
    		        fp_msg (infits); fp_msg (".fz\n"); 
    		        fp_noop (); exit (-1);
                        } else {
                            infits[namelen] = '\0';  /* remove the .fz suffix */
    		    }
    	         }
    	      }
    
                  /* if writing to stdout, then we are all done */
    	      if (fpptr->to_stdout) {
                          continue;
    	      }
    
                  if (fpptr->outfile[0]) {  /* user specified output file name */
    	          nfiles++;
    		  if (nfiles > 1) {
    		      fp_msg ("Error: cannot use same output file name for multiple files:\n   ");
    		      fp_msg (fpptr->outfile);
    		      fp_msg ("\n"); fp_noop (); exit (-1);
    	          }
    
                      /* check that output file doesn't exist */
    	          if (fp_access (fpptr->outfile) == 0) {
    		            fp_msg ("Error: output file already exists:\n "); 
    			    fp_msg (fpptr->outfile);
    		            fp_msg ("\n "); fp_noop (); exit (-1);
    		  } 
                      continue;
    	      }     
    
    	      /* construct output file name to test */
    	      if (fpptr->prefix[0]) {
                      if (strlen(fpptr->prefix) + strlen(infits) > SZ_STR - 1) {
    		      fp_msg ("Error: output file name for\n   "); fp_msg (infits);
    		      fp_msg ("\n   is too long with the prefix\n"); fp_noop (); exit (-1);
    	          }
    	          strcat(outfits,fpptr->prefix);
    	      }
    
    	      /* construct output file name */
    	      if (infits[0] == '-') {
    	        strcpy(outfits, "output.fits");
    	      } else {
    	        strcpy(outfits, infits);
    	      }
    
    	      /* remove .gz suffix, if present (output is not gzipped) */
                  namelen = strlen(outfits);
    	      if ( !strcmp(".gz", outfits + namelen - 3) ) {
                            outfits[namelen - 3] = '\0';
    	      }
    
    	      /* check for .fz suffix that is sometimes required */
    	      /* and remove it if present */
    	      if (infits[0] != '-') {  /* if not reading from stdin stream */
                     namelen = strlen(outfits);
    	         if ( !strcmp(".fz", outfits + namelen - 3) ) { /* suffix is present */
                            outfits[namelen - 3] = '\0';
    	         } else if (fpptr->delete_suffix) {  /* required suffix is missing */
    		    fp_msg ("Error: input compressed file "); fp_msg (infits);
    		    fp_msg ("\n does not have the default .fz suffix.\n"); 
    		    fp_noop (); exit (-1);
    	         }
    	      }
    
    	      /* if infits != outfits, make sure outfits doesn't already exist */
                  if (strcmp(infits, outfits)) {
    	                if (fp_access (outfits) == 0) {
    		            fp_msg ("Error: output file already exists:\n "); fp_msg (outfits);
    		            fp_msg ("\n "); fp_noop (); exit (-1);
    		        }       
    	      }
    
    	      /* if gzipping the output, make sure .gz file doesn't exist */
    	      if (fpptr->do_gzip_file) {
    	                strcat(outfits, ".gz");
    	                if (fp_access (outfits) == 0) {
    		            fp_msg ("Error: output file already exists:\n "); fp_msg (outfits);
    		            fp_msg ("\n "); fp_noop (); exit (-1);
    		        }       
                  		namelen = strlen(outfits);
                            outfits[namelen - 3] = '\0';  /* remove the .gz suffix again */
    	      }
    	  } else {
    	  	/* ********** This section applies to fpack ************ */
    
    	      /* check that input file  exists */
    	      if (infits[0] != '-') {  /* if not reading from stdin stream */
    	        if (fp_access (infits) != 0) {  /* if not, then check if */
    		    strcat(infits, ".gz");     /* a gzipped version exsits */
    	            if (fp_access (infits) != 0) {
                            namelen = strlen(infits);
                            infits[namelen - 3] = '\0';  /* remove the .gz suffix */
    		        fp_msg ("Error: can't find or read input file "); fp_msg (infits);
    		        fp_msg ("\n"); fp_noop (); exit (-1);
                        }
    	        }
    	      }
    
                  /* make sure the file to pack does not already have a .fz suffix */
                  namelen = strlen(infits);
    	      if ( !strcmp(".fz", infits + namelen - 3) ) {
    		        fp_msg ("Error: fpack input file already has '.fz' suffix\n" ); fp_msg (infits);
    		        fp_msg ("\n"); fp_noop (); exit (-1);
    	      }
    
                  /* if writing to stdout, or just testing the files, then we are all done */
    	      if (fpptr->to_stdout || fpptr->test_all) {
                            continue;
    	      }
    
    	      /* construct output file name */
    	      if (infits[0] == '-') {
    	        strcpy(outfits, "input.fits");
    	      } else {
    	        strcpy(outfits, infits);
    	      }
    
    	      /* remove .gz suffix, if present (output is not gzipped) */
                  namelen = strlen(outfits);
    	      if ( !strcmp(".gz", outfits + namelen - 3) ) {
                            outfits[namelen - 3] = '\0';
    	      }
    	      
    	      /* remove .imh suffix (IRAF format image), and replace with .fits */
                  namelen = strlen(outfits);
    	      if ( !strcmp(".imh", outfits + namelen - 4) ) {
                            outfits[namelen - 4] = '\0';
                            strcat(outfits, ".fits");
    	      }
    
    	      /* If not clobbering the input file, add .fz suffix to output name */
    	      if (! fpptr->clobber)
    		        strcat(outfits, ".fz");
    			
    	      /* if infits != outfits, make sure outfits doesn't already exist */
                  if (strcmp(infits, outfits)) {
    	                if (fp_access (outfits) == 0) {
    		            fp_msg ("Error: output file already exists:\n "); fp_msg (outfits);
    		            fp_msg ("\n "); fp_noop (); exit (-1);
    		        }       
    	      }
    	  }   /* end of fpack section */
    	}
    
    	fpptr->preflight_checked++;
    	return(0);
    }
    
    /*--------------------------------------------------------------------------*/
    /* must run fp_preflight() before fp_loop()
     */
    int fp_loop (int argc, char *argv[], int unpack, fpstate fpvar)
    {
    	char	infits[SZ_STR], outfits[SZ_STR];
    	char	temp[SZ_STR], answer[30];
    	int	iarg, islossless, namelen, iraf_infile = 0, status = 0, ifail;
            
    	if (fpvar.initialized != FP_INIT_MAGIC) {
    	    fp_msg ("Error: internal initialization error\n"); exit (-1);
    	} else if (! fpvar.preflight_checked) {
    	    fp_msg ("Error: internal preflight error\n"); exit (-1);
    	}
    
    	if (fpvar.test_all && fpvar.outfile[0]) {
    	    outreport = fopen(fpvar.outfile, "w");
    		fprintf(outreport," Filename Extension BITPIX NAXIS1 NAXIS2 Size N_nulls Minval Maxval Mean Sigm Noise1 Noise2 Noise3 Noise5 T_whole T_rowbyrow ");
    		fprintf(outreport,"[Comp_ratio, Pack_cpu, Unpack_cpu, Lossless readtimes] (repeated for Rice, Hcompress, and GZIP)\n");
    	}
    
    
    	tempfilename[0] = '\0';
    	tempfilename2[0] = '\0';
    	tempfilename3[0] = '\0';
    
    /* set up signal handler to delete temporary file on abort */	    
    #ifdef SIGINT
        if (signal(SIGINT, SIG_IGN) != SIG_IGN) {
    	(void) signal(SIGINT,  abort_fpack); 
        }
    #endif
    
    #ifdef SIGTERM
        if (signal(SIGTERM, SIG_IGN) != SIG_IGN) {
    	(void) signal(SIGTERM,  abort_fpack); 
        }
    #endif
    
    #ifdef SIGHUP
        if (signal(SIGHUP, SIG_IGN) != SIG_IGN) {
    	(void) signal(SIGHUP,  abort_fpack);
        }
    #endif
    
    	for (iarg=fpvar.firstfile; iarg < argc; iarg++) {
    
              temp[0] = '\0';
    	  outfits[0] = '\0';
              islossless = 1;
    
    	  strncpy (infits, argv[iarg], SZ_STR - 1);
    
              if (unpack) {
    	  	/* ********** This section applies to funpack ************ */
    
    	      /* find input file */
    	      if (infits[0] != '-') {  /* if not reading from stdin stream */
    	         if (fp_access (infits) != 0) {  /* if not, then */
    		    strcat(infits, ".fz");       /* a .fz version must exsit */
    	         }
    	      }
    
    	      if (fpvar.to_stdout) {
    		strcpy(outfits, "-");
    
                  } else if (fpvar.outfile[0]) {  /* user specified output file name */
    	          strcpy(outfits, fpvar.outfile);
    
    	      } else {
    	          /* construct output file name */
    	          if (fpvar.prefix[0]) {
    	              strcat(outfits,fpvar.prefix);
    	          }
    
    	          /* construct output file name */
    	          if (infits[0] == '-') {
    	            strcpy(outfits, "output.fits");
    	          } else {
    	            strcpy(outfits, infits);
    	          }
    
    	          /* remove .gz suffix, if present (output is not gzipped) */
                      namelen = strlen(outfits);
    	          if ( !strcmp(".gz", outfits + namelen - 3) ) {
                            outfits[namelen - 3] = '\0';
    	          }
    
    	          /* check for .fz suffix that is sometimes required */
    	          /* and remove it if present */
                      namelen = strlen(outfits);
    	          if ( !strcmp(".fz", outfits + namelen - 3) ) { /* suffix is present */
                            outfits[namelen - 3] = '\0';
    	          }
    	      }
    
    	  } else {
    	  	/* ********** This section applies to fpack ************ */
    
    	      if (fpvar.to_stdout) {
    		strcpy(outfits, "-");
    	      } else if (! fpvar.test_all) {
    
    	          /* construct output file name */
    	          if (infits[0] == '-') {
    	            strcpy(outfits, "input.fits");
    	          } else {
    	            strcpy(outfits, infits);
    	          }
    	      
    	          /* remove .gz suffix, if present (output is not gzipped) */
                      namelen = strlen(outfits);
    	          if ( !strcmp(".gz", outfits + namelen - 3) ) {
                            outfits[namelen - 3] = '\0';
    	          }
    	      
    	          /* remove .imh suffix (IRAF format image), and replace with .fits */
                      namelen = strlen(outfits);
    	          if ( !strcmp(".imh", outfits + namelen - 4) ) {
                            outfits[namelen - 4] = '\0';
                            strcat(outfits, ".fits");
                            iraf_infile = 1;  /* this is an IRAF format input file */
    			           /* change the output name to "NAME.fits.fz" */
    	          }
    
    	          /* If not clobbering the input file, add .fz suffix to output name */
    	          if (! fpvar.clobber)
    		        strcat(outfits, ".fz");
    	      }
    	  }
    
              strncpy(temp, outfits, SZ_STR-1);
    
    	  if (infits[0] != '-') {  /* if not reading from stdin stream */
                 if (!strcmp(infits, outfits) ) {  /* are input and output names the same? */
    
                    /* clobber the input file with the output file with the same name */
                    if (! fpvar.clobber) {
                        fp_msg ("\nError: must use -F flag to clobber input file.\n");
    		    exit (-1);
    		} 
    
                    /* create temporary file name in the output directory (same as input directory)*/
    		fp_tmpnam("Tmp1", infits, outfits);
    		
                    strcpy(tempfilename, outfits);  /* store temp file name, in case of abort */
    	      }
    	    }
    
    
                /* *************** now do the real work ********************* */
    	    
    	    if (fpvar.verbose && ! fpvar.to_stdout)
    		printf("%s ", infits);
    		
    	    if (fpvar.test_all) {   /* compare all the algorithms */
    
                    /* create 2 temporary file names, in the CWD */
    		fp_tmpnam("Tmpfile1", "", tempfilename);
    		fp_tmpnam("Tmpfile2", "", tempfilename2);
    
    		fp_test (infits, tempfilename, tempfilename2, fpvar);
    
    		remove(tempfilename);
                    tempfilename[0] = '\0';   /* clear the temp file name */
    		remove(tempfilename2);
                    tempfilename2[0] = '\0';
                    continue;
    
    	    } else if (unpack) {
    		if (fpvar.to_stdout) {
    			/* unpack the input file to the stdout stream */
    			fp_unpack (infits, outfits, fpvar);
    		} else {
    			/* unpack to temporary file, so other tasks can't open it until it is renamed */
    
    			/* create  temporary file name, in the output directory */
    			fp_tmpnam("Tmp2", outfits, tempfilename2);
    
    			/* unpack the input file to the temporary file */
    			fp_unpack (infits, tempfilename2, fpvar);
    
    			/* rename the temporary file to it's real name */
    			ifail = rename(tempfilename2, outfits);
    			if (ifail) {
    			    fp_msg("Failed to rename temporary file name:\n  ");
    			    fp_msg(tempfilename2);
    			    fp_msg(" -> ");
    			    fp_msg(outfits);
    			    fp_msg("\n");
    			    exit (-1);
    			} else {
    			    tempfilename2[0] = '\0';  /* clear temporary file name */
    			}
    		}
    	    }  else {
    		fp_pack (infits, outfits, fpvar, &islossless);
    	    }
    
    	    if (fpvar.to_stdout) {
    		continue;
    	    }
    
                /* ********** clobber and/or delete files, if needed ************** */
    
                if (!strcmp(infits, temp) && fpvar.clobber ) {  
    
    		if (!islossless && ! fpvar.do_not_prompt) {
    		    fp_msg ("\nFile ");
    		    fp_msg (infits); 
    		    fp_msg ("\nwas compressed with a LOSSY method.  Overwrite the\n");
    		    fp_msg ("original file with the compressed version? (Y/N) ");
    		    fgets(answer, 29, stdin);
    		    if (answer[0] != 'Y' && answer[0] != 'y') {
    		        fp_msg ("\noriginal file NOT overwritten!\n");
    			remove(outfits);
                            continue;
    		    }
    		}
    
    		if (iraf_infile) {  /* special case of deleting an IRAF format header and pixel file */
    		   if (fits_delete_iraf_file(infits, &status)) {
    		        fp_msg("\nError deleting IRAF .imh and .pix files.\n");
    			fp_msg(infits); fp_msg ("\n"); exit (-1);
    		    }
    		}
    				
    #if defined(unix) || defined(__unix__)  || defined(__unix)
    	        /* rename clobbers input on Unix platforms */
    		if (rename (outfits, temp) != 0) {
    		        fp_msg ("\nError renaming tmp file to ");
    		        fp_msg (temp); fp_msg ("\n"); exit (-1);
    		}
    #else
    	        /* rename DOES NOT clobber existing files on Windows platforms */
                    /* so explicitly remove any existing file before renaming the file */
                    remove(temp);
    		if (rename (outfits, temp) != 0) {
    		        fp_msg ("\nError renaming tmp file to ");
    		        fp_msg (temp); fp_msg ("\n"); exit (-1);
    		}
    #endif
    
    		tempfilename[0] = '\0';  /* clear temporary file name */
                    strcpy(outfits, temp);
    
    	    } else if (fpvar.clobber || fpvar.delete_input) {      /* delete the input file */
    	         if (!islossless && !fpvar.do_not_prompt) {  /* user did not turn off delete prompt */
    		    fp_msg ("\nFile ");
    		    fp_msg (infits); 
    		    fp_msg ("\nwas compressed with a LOSSY method.  \n");
    		    fp_msg ("Delete the original file? (Y/N) ");
    		    fgets(answer, 29, stdin);
    		    if (answer[0] != 'Y' && answer[0] != 'y') {  /* user abort */
    		        fp_msg ("\noriginal file NOT deleted!\n");
    		    } else {
    			if (iraf_infile) {  /* special case of deleting an IRAF format header and pixel file */
    		   	    if (fits_delete_iraf_file(infits, &status)) {
    		        	fp_msg("\nError deleting IRAF .imh and .pix files.\n");
    				fp_msg(infits); fp_msg ("\n"); exit (-1);
    			    }
    		        }  else if (remove(infits) != 0) {  /* normal case of deleting input FITS file */
    		            fp_msg ("\nError deleting input file ");
    		            fp_msg (infits); fp_msg ("\n"); exit (-1);
    		        }
    		    }
    		  } else {   /* user said don't prompt, so just delete the input file */
    			if (iraf_infile) {  /* special case of deleting an IRAF format header and pixel file */
    		   	    if (fits_delete_iraf_file(infits, &status)) {
    		        	fp_msg("\nError deleting IRAF .imh and .pix files.\n");
    				fp_msg(infits); fp_msg ("\n"); exit (-1);
    			    }
    		        }  else if (remove(infits) != 0) {  /* normal case of deleting input FITS file */
    		            fp_msg ("\nError deleting input file ");
    		            fp_msg (infits); fp_msg ("\n"); exit (-1);
    		        }
    		  }
    	    }
                iraf_infile = 0; 
    
    	    if (fpvar.do_gzip_file) {       /* gzip the output file */
    		strcpy(temp, "gzip -1 ");
    		strcat(temp,outfits);
                    system(temp);
    	        strcat(outfits, ".gz");    /* only possibible with funpack */
    	    }
    
    	    if (fpvar.verbose && ! fpvar.to_stdout)
    		printf("-> %s\n", outfits);
    
    	}
    
    	if (fpvar.test_all && fpvar.outfile[0])
    	    fclose(outreport);
    	return(0);
    }
    
    /*--------------------------------------------------------------------------*/
    /* fp_pack assumes the output file does not exist (checked by preflight)
     */
    int fp_pack (char *infits, char *outfits, fpstate fpvar, int *islossless)
    {
    	fitsfile *infptr, *outfptr;
    	int	stat=0;
    
    	fits_open_file (&infptr, infits, READONLY, &stat);
    	if (stat) { fits_report_error (stderr, stat); exit (stat); }
    
    	fits_create_file (&outfptr, outfits, &stat);
    	if (stat) { 
    	    fp_abort_output(infptr, NULL, stat);
    	}
    
    
    	if (stat) { 
    	    fp_abort_output(infptr, outfptr, stat);
    	}
    
    	while (! stat) {
    
    	    /*  LOOP OVER EACH HDU */
    
    	    fits_set_lossy_int (outfptr, fpvar.int_to_float, &stat);
    	    fits_set_compression_type (outfptr, fpvar.comptype, &stat);
    	    fits_set_tile_dim (outfptr, 6, fpvar.ntile, &stat);
    
    	    if (fpvar.no_dither)
    	        fits_set_quantize_method(outfptr, -1, &stat);
    	    else
    	        fits_set_quantize_method(outfptr, fpvar.dither_method, &stat);
    
    	    fits_set_quantize_level (outfptr, fpvar.quantize_level, &stat);
    	    fits_set_dither_offset(outfptr, fpvar.dither_offset, &stat);
    	    fits_set_hcomp_scale (outfptr, fpvar.scale, &stat);
    	    fits_set_hcomp_smooth (outfptr, fpvar.smooth, &stat);
    
    	    fp_pack_hdu (infptr, outfptr, fpvar, islossless, &stat);
    
    	    if (fpvar.do_checksums) {
    	        fits_write_chksum (outfptr, &stat);
    	    }
    
    	    fits_movrel_hdu (infptr, 1, NULL, &stat);
    	}
    
    	if (stat == END_OF_FILE) stat = 0;
    
    	/* set checksum for case of newly created primary HDU	 */
    
    	if (fpvar.do_checksums) {
    	    fits_movabs_hdu (outfptr, 1, NULL, &stat);
    	    fits_write_chksum (outfptr, &stat);
    	}
    
    	if (stat) { 
    	    fp_abort_output(infptr, outfptr, stat);
    	}
    
    	fits_close_file (outfptr, &stat);
    	fits_close_file (infptr, &stat);
    
    	return(0);
    }
    
    /*--------------------------------------------------------------------------*/
    /* fp_unpack assumes the output file does not exist
     */
    int fp_unpack (char *infits, char *outfits, fpstate fpvar)
    {
            fitsfile *infptr, *outfptr;
            int stat=0, hdutype, extnum, single = 0;
    	char *loc, *hduloc, hduname[SZ_STR];
    
            fits_open_file (&infptr, infits, READONLY, &stat);
            fits_create_file (&outfptr, outfits, &stat);
    
    	if (stat) { 
    	    fp_abort_output(infptr, outfptr, stat);
    	}
    
            if (fpvar.extname[0]) {  /* unpack a list of HDUs? */
    
                /* move to the first HDU in the list */
    	    hduloc = fpvar.extname;
    	    loc = strchr(hduloc, ','); /* look for 'comma' delimiter between names */
    	    
    	    if (loc)         
    	        *loc = '\0';  /* terminate the first name in the string */
    
    	    strcpy(hduname, hduloc);  /* copy the first name into temporary string */
    
    	    if (loc)        
    	        hduloc = loc + 1;  /* advance to the beginning of the next name, if any */
                else {
    	        hduloc += strlen(hduname);  /* end of the list */
    	        single = 1;  /* only 1 HDU is being unpacked */
                }
    
                if (isdigit( (int) hduname[0]) ) {
    	       extnum = strtol(hduname, &loc, 10); /* read the string as an integer */
    
                   /* check for junk following the integer */
                   if (*loc == '\0' )  /* no junk, so move to this HDU number (+1) */
                   {	       
                      fits_movabs_hdu(infptr, extnum + 1, &hdutype, &stat);  /* move to HDU number */
                      if (hdutype != IMAGE_HDU)
    		     stat = NOT_IMAGE;
    
                   } else {  /* the string is not an integer, so must be the column name */
    	          hdutype = IMAGE_HDU;
    	          fits_movnam_hdu(infptr, hdutype, hduname, 0, &stat);
     	       }
                }
    	    else
    	    {
                    /* move to the named image extension */
      	        hdutype = IMAGE_HDU;
    	        fits_movnam_hdu(infptr, hdutype, hduname, 0, &stat);
                }
            }
    
            if (stat) {
    	  fp_msg ("Unable to find and move to extension '");
              fp_msg(hduname);
    	  fp_msg("'\n");
    	  fp_abort_output(infptr, outfptr, stat);
            }
    
            while (! stat) {
    	
    	    if (single)
    	        stat = -1;  /* special status flag to force output primary array */
    
                fp_unpack_hdu (infptr, outfptr, fpvar, &stat);
    
    	    if (fpvar.do_checksums) {
    	        fits_write_chksum (outfptr, &stat);
    	    }
    
    	    /* move to the next HDU */
                if (fpvar.extname[0]) {  /* unpack a list of HDUs? */
    
                    if (!(*hduloc)) {
    		    stat = END_OF_FILE;  /* we reached the end of the list */
    		} else {
    		    /* parse the next HDU name and move to it */
    	            loc = strchr(hduloc, ',');
    	    
    	            if (loc)         /* look for 'comma' delimiter between names */
    	               *loc = '\0';  /* terminate the first name in the string */
    
    	            strcpy(hduname, hduloc);  /* copy the next name into temporary string */
    
    	            if (loc)         
    	                hduloc = loc + 1;  /* advance to the beginning of the next name, if any */
                        else
    	               *hduloc = '\0';  /* end of the list */
    
                        if (isdigit( (int) hduname[0]) ) {
    	               extnum = strtol(hduname, &loc, 10); /* read the string as an integer */
    
                          /* check for junk following the integer */
                          if (*loc == '\0' )   /* no junk, so move to this HDU number (+1) */
    		      {	       
                            fits_movabs_hdu(infptr, extnum + 1, &hdutype, &stat);  /* move to HDU number */
                            if (hdutype != IMAGE_HDU)
    		        stat = NOT_IMAGE;
    
                          } else {  /* the string is not an integer, so must be the column name */
    	                hdutype = IMAGE_HDU;
    	                fits_movnam_hdu(infptr, hdutype, hduname, 0, &stat);
     	              }
    
                        } else {
                          /* move to the named image extension */
      	              hdutype = IMAGE_HDU;
    	              fits_movnam_hdu(infptr, hdutype, hduname, 0, &stat);
                       }
    
                       if (stat) {
    	              fp_msg ("Unable to find and move to extension '");
                          fp_msg(hduname);
    	              fp_msg("'\n");
                       }
                    }
                } else {
                    /* increment to the next HDU */
                    fits_movrel_hdu (infptr, 1, NULL, &stat);
                }
            }
    
            if (stat == END_OF_FILE) stat = 0;
    
            /* set checksum for case of newly created primary HDU
             */
    	if (fpvar.do_checksums) {
    	    fits_movabs_hdu (outfptr, 1, NULL, &stat);
    	    fits_write_chksum (outfptr, &stat);
    	}
    
    
    	if (stat) { 
    	    fp_abort_output(infptr, outfptr, stat);
    	}
    
    	fits_close_file (outfptr, &stat);
    	fits_close_file (infptr, &stat);
    
    	return(0);
    }
    
    /*--------------------------------------------------------------------------*/
    /* fp_test assumes the output files do not exist
     */
    int fp_test (char *infits, char *outfits, char *outfits2, fpstate fpvar)
    {
    	fitsfile *inputfptr, *infptr, *outfptr, *outfptr2, *tempfile;
    
    	long	naxes[9] = {1, 1, 1, 1, 1, 1, 1, 1, 1};
    	long	tilesize[9] = {0,1,1,1,1,1,1,1,1};
    	int	stat=0, totpix=0, naxis=0, ii, hdutype, bitpix = 0, extnum = 0, len;
    	int     tstatus = 0, hdunum, rescale_flag, bpix, ncols;
    	char	dtype[8], dimen[100];
    	double  bscale, rescale, noisemin;
    	long headstart, datastart, dataend;
    	float origdata = 0., whole_cpu, whole_elapse, row_elapse, row_cpu, xbits;
    
    	LONGLONG nrows;
    	/* structure to hold image statistics (defined in fpack.h) */
    	imgstats imagestats;
    
    	fits_open_file (&inputfptr, infits, READONLY, &stat);
    	fits_create_file (&outfptr, outfits, &stat);
    	fits_create_file (&outfptr2, outfits2, &stat);
    
    	if (stat) { fits_report_error (stderr, stat); exit (stat); }
    
    	while (! stat) {
    	    
    	    /*  LOOP OVER EACH HDU */
    	    rescale_flag = 0;
    	    fits_get_hdu_type (inputfptr, &hdutype, &stat);
    
    	    if (hdutype == IMAGE_HDU) {
    	        fits_get_img_param (inputfptr, 9, &bitpix, &naxis, naxes, &stat);
    	        for (totpix=1, ii=0; ii < 9; ii++) totpix *= naxes[ii];
    	    }
    
    	    if (!fits_is_compressed_image (inputfptr,  &stat) && hdutype == IMAGE_HDU &&
    		naxis != 0 && totpix != 0 && fpvar.do_images) {
    
    		/* rescale a scaled integer image to reduce noise? */
    		if (fpvar.rescale_noise != 0. && bitpix > 0 && bitpix < LONGLONG_IMG) {
    
    		   tstatus = 0;
    		   fits_read_key(inputfptr, TDOUBLE, "BSCALE", &bscale, 0, &tstatus);
    
    		   if (tstatus == 0 && bscale != 1.0) {  /* image must be scaled */
    
    			if (bitpix == LONG_IMG)
    			  fp_i4stat(inputfptr, naxis, naxes, &imagestats, &stat);
    			else
    			  fp_i2stat(inputfptr, naxis, naxes, &imagestats, &stat);
    
    			/* use the minimum of the MAD 2nd, 3rd, and 5th order noise estimates */
    			noisemin = imagestats.noise3;
    			if (imagestats.noise2 != 0. && imagestats.noise2 < noisemin) noisemin = imagestats.noise2;
    			if (imagestats.noise5 != 0. && imagestats.noise5 < noisemin) noisemin = imagestats.noise5;
    
    			rescale = noisemin / fpvar.rescale_noise;
    			if (rescale > 1.0) {
    			  
    			  /* all the criteria are met, so create a temporary file that */
    			  /* contains a rescaled version of the image, in CWD */
    			  
                    	  /* create temporary file name */
    			  fp_tmpnam("Tmpfile3", "", tempfilename3);
    
    			  fits_create_file(&tempfile, tempfilename3, &stat);
    
    			  fits_get_hdu_num(inputfptr, &hdunum);
    			  if (hdunum != 1) {
    
    			     /* the input hdu is an image extension, so create dummy primary */
    			     fits_create_img(tempfile, 8, 0, naxes, &stat);
    			  }
    
    			  fits_copy_header(inputfptr, tempfile, &stat); /* copy the header */
    			  
    			  /* rescale the data, so that it will compress more efficiently */
    			  if (bitpix == LONG_IMG)
    			    fp_i4rescale(inputfptr, naxis, naxes, rescale, tempfile, &stat);
    			  else
    			    fp_i2rescale(inputfptr, naxis, naxes, rescale, tempfile, &stat);
    
    			  /* scale the BSCALE keyword by the inverse factor */
    
    			  bscale = bscale * rescale;  
    			  fits_update_key(tempfile, TDOUBLE, "BSCALE", &bscale, 0, &stat);
    
    			  /* rescan the header, to reset the actual scaling parameters */
    			  fits_set_hdustruc(tempfile, &stat);
    
    			  infptr = tempfile;
    			  rescale_flag = 1;
    			}
    		   }
    		 }
    
    		if (!rescale_flag)   /* just compress the input file, without rescaling */
    		   infptr = inputfptr;
    
    		/* compute basic statistics about the input image */
                    if (bitpix == BYTE_IMG) {
    		   bpix = 8;
    		   strcpy(dtype, "8  ");
    		   fp_i2stat(infptr, naxis, naxes, &imagestats, &stat);
    		} else if (bitpix == SHORT_IMG) {
    		   bpix = 16;
    		   strcpy(dtype, "16 ");
    		   fp_i2stat(infptr, naxis, naxes, &imagestats, &stat);
    		} else if (bitpix == LONG_IMG) {
    		   bpix = 32;
    		   strcpy(dtype, "32 ");
    		   fp_i4stat(infptr, naxis, naxes, &imagestats, &stat);
    		} else if (bitpix == LONGLONG_IMG) {
    		   bpix = 64;
    		   strcpy(dtype, "64 ");
    		} else if (bitpix == FLOAT_IMG)   {
    		   bpix = 32;
    		   strcpy(dtype, "-32");
    		   fp_r4stat(infptr, naxis, naxes, &imagestats, &stat);
    		} else if (bitpix == DOUBLE_IMG)  {
    		   bpix = 64;
    		   strcpy(dtype, "-64");
    		   fp_r4stat(infptr, naxis, naxes, &imagestats, &stat);
    		}
    
    		/* use the minimum of the MAD 2nd, 3rd, and 5th order noise estimates */
    		noisemin = imagestats.noise3;
    		if (imagestats.noise2 != 0. && imagestats.noise2 < noisemin) noisemin = imagestats.noise2;
    		if (imagestats.noise5 != 0. && imagestats.noise5 < noisemin) noisemin = imagestats.noise5;
    
                    xbits = (float) (log10(noisemin)/.301 + 1.792);
    
    		printf("\n File: %s\n", infits);
    		printf("  Ext BITPIX Dimens.   Nulls    Min    Max     Mean    Sigma  Noise2  Noise3  Noise5  Nbits   MaxR\n");
    
    		printf("  %3d  %s", extnum, dtype);
    		sprintf(dimen," (%ld", naxes[0]);
    		len =strlen(dimen);
    		for (ii = 1; ii < naxis; ii++) {
    		    sprintf(dimen+len,",%ld", naxes[ii]);
    		    len =strlen(dimen);
    		}
    		strcat(dimen, ")");
    		printf("%-12s",dimen);
    
    		fits_get_hduaddr(inputfptr, &headstart, &datastart, &dataend, &stat);
    		origdata = (float) ((dataend - datastart)/1000000.);
    
    		/* get elapsed and cpu times need to read the uncompressed image */
    		fits_read_image_speed (infptr, &whole_elapse, &whole_cpu,
    		               &row_elapse, &row_cpu, &stat);
    
    		printf(" %5d %6.0f %6.0f %8.1f %#8.2g %#7.3g %#7.3g %#7.3g %#5.1f %#6.2f\n",
    		        imagestats.n_nulls, imagestats.minval, imagestats.maxval, 
    		      imagestats.mean, imagestats.sigma, 
    		      imagestats.noise2, imagestats.noise3, imagestats.noise5, xbits, bpix/xbits);
    
    		printf("\n       Type   Ratio       Size (MB)     Pk (Sec) UnPk Exact ElpN CPUN  Elp1  CPU1\n");
    
    		printf("       Native                                             %5.3f %5.3f %5.3f %5.3f\n",
    		        whole_elapse, whole_cpu, row_elapse, row_cpu);
    
    		if (fpvar.outfile[0]) {
    		    fprintf(outreport,
    	" %s  %d %d %ld %ld %#10.4g %d %#10.4g %#10.4g %#10.4g %#10.4g %#10.4g %#10.4g %#10.4g %#10.4g %#10.4g %#10.4g %#10.4g %#10.4g",
    		      infits, extnum, bitpix, naxes[0], naxes[1], origdata, imagestats.n_nulls, imagestats.minval, 
    		      imagestats.maxval, imagestats.mean, imagestats.sigma, 
    		      imagestats.noise1, imagestats.noise2, imagestats.noise3, imagestats.noise5, whole_elapse, whole_cpu, row_elapse, row_cpu);
    		}
    
    		fits_set_lossy_int (outfptr, fpvar.int_to_float, &stat);
    		if ( (bitpix > 0) && (fpvar.int_to_float != 0) ) {
    
    			if ( (noisemin < (fpvar.n3ratio * fpvar.quantize_level) ) ||
    			    (noisemin < fpvar.n3min)) {
    			
    			    /* image contains too little noise to quantize effectively */
    			    fits_set_lossy_int (outfptr, 0, &stat);
    			    fits_get_hdu_num(infptr, &hdunum);
    
    printf("    HDU %d does not meet noise criteria to be quantized, so losslessly compressed.\n", hdunum);
    			} 
    		}
    
    		/* test compression ratio and speed for each algorithm */
    
    		if (fpvar.quantize_level != 0) {
    
    		  fits_set_compression_type (outfptr, RICE_1, &stat);
    		  fits_set_tile_dim (outfptr, 6, fpvar.ntile, &stat);
    		  if (fpvar.no_dither)
    	    	    fits_set_quantize_method(outfptr, -1, &stat);
    		  else
    	    	    fits_set_quantize_method(outfptr, fpvar.dither_method, &stat);
    
    		  fits_set_quantize_level (outfptr, fpvar.quantize_level, &stat);
    		  fits_set_dither_offset(outfptr, fpvar.dither_offset, &stat);
    		  fits_set_hcomp_scale (outfptr, fpvar.scale, &stat);
    		  fits_set_hcomp_smooth (outfptr, fpvar.smooth, &stat);
    
    		  fp_test_hdu(infptr, outfptr, outfptr2, fpvar, &stat);
    		}
    
    		if (fpvar.quantize_level != 0) {
    \
      		  fits_set_compression_type (outfptr, HCOMPRESS_1, &stat);
    		  fits_set_tile_dim (outfptr, 6, fpvar.ntile, &stat);
    
    		  if (fpvar.no_dither)
    	    	    fits_set_quantize_method(outfptr, -1, &stat);
    		  else
    	    	    fits_set_quantize_method(outfptr, fpvar.dither_method, &stat);
    
    		  fits_set_quantize_level (outfptr, fpvar.quantize_level, &stat);
    		  fits_set_dither_offset(outfptr, fpvar.dither_offset, &stat);
    		  fits_set_hcomp_scale (outfptr, fpvar.scale, &stat);
    		  fits_set_hcomp_smooth (outfptr, fpvar.smooth, &stat);
    
    		  fp_test_hdu(infptr, outfptr, outfptr2, fpvar, &stat);
    		}
    
    		if (fpvar.comptype == GZIP_2) {
    		    fits_set_compression_type (outfptr, GZIP_2, &stat);
    		} else {
    		    fits_set_compression_type (outfptr, GZIP_1, &stat);
    		}
    
    		fits_set_tile_dim (outfptr, 6, fpvar.ntile, &stat);
    
    		if (fpvar.no_dither)
    	    	    fits_set_quantize_method(outfptr, -1, &stat);
    		else
    	    	    fits_set_quantize_method(outfptr, fpvar.dither_method, &stat);
    
    		fits_set_quantize_level (outfptr, fpvar.quantize_level, &stat);
    		fits_set_dither_offset(outfptr, fpvar.dither_offset, &stat);
    		fits_set_hcomp_scale (outfptr, fpvar.scale, &stat);
    		fits_set_hcomp_smooth (outfptr, fpvar.smooth, &stat);
    
    		fp_test_hdu(infptr, outfptr, outfptr2, fpvar, &stat);
    
    /*
    		fits_set_compression_type (outfptr, BZIP2_1, &stat);
    		fits_set_tile_dim (outfptr, 6, fpvar.ntile, &stat);
    		fp_test_hdu(infptr, outfptr, outfptr2, fpvar, &stat);
    */
    /*
    		fits_set_compression_type (outfptr, PLIO_1, &stat);
    		fits_set_tile_dim (outfptr, 6, fpvar.ntile, &stat);
    		fp_test_hdu(infptr, outfptr, outfptr2, fpvar, &stat);
    */
    /*
                    if (bitpix == SHORT_IMG || bitpix == LONG_IMG) {
    		  fits_set_compression_type (outfptr, NOCOMPRESS, &stat);
    		  fits_set_tile_dim (outfptr, 6, fpvar.ntile, &stat);
    		  fp_test_hdu(infptr, outfptr, outfptr2, fpvar, &stat);	  
    		}
    */
    		if (fpvar.outfile[0])
    		    fprintf(outreport,"\n");
    
    		/* delete the temporary file */
    		if (rescale_flag)  { 
    		    fits_delete_file (infptr, &stat);
    		    tempfilename3[0] = '\0';   /* clear the temp filename */ 
                    }
    	    } else if ( (hdutype == BINARY_TBL) && fpvar.do_tables) {
    
        		fits_get_num_rowsll(inputfptr, &nrows, &stat);
        		fits_get_num_cols(inputfptr, &ncols, &stat);
     		printf("\n File: %s, HDU %d,  %d cols X %ld rows\n", infits, extnum, ncols, nrows);
    		fp_test_table(inputfptr, outfptr, outfptr2, fpvar, &stat);	  
    
    	    } else {
    		fits_copy_hdu (inputfptr, outfptr, 0, &stat);
    		fits_copy_hdu (inputfptr, outfptr2, 0, &stat);
    	    }
    
    	    fits_movrel_hdu (inputfptr, 1, NULL, &stat);
                extnum++;
    	}
    
    
    	if (stat == END_OF_FILE) stat = 0;
    
    	fits_close_file (outfptr2, &stat);
    	fits_close_file (outfptr, &stat);
    	fits_close_file (inputfptr, &stat);
    
    	if (stat) {
    	  fits_report_error (stderr, stat);
    	}
    	return(0);
    }
    /*--------------------------------------------------------------------------*/
    int fp_pack_hdu (fitsfile *infptr, fitsfile *outfptr, fpstate fpvar,
       int *islossless, int *status)
    {
    	fitsfile *tempfile;
    	long	naxes[9] = {1, 1, 1, 1, 1, 1, 1, 1, 1};
    	int	stat=0, totpix=0, naxis=0, ii, hdutype, bitpix;
    	int	tstatus, hdunum, rescale_flag = 0;
    	double  bscale, rescale;
    
    	char	outfits[SZ_STR], fzalgor[FLEN_VALUE];
    	long 	headstart, datastart, dataend, datasize;
    	double  noisemin;
    	/* structure to hold image statistics (defined in fpack.h) */
    	imgstats imagestats;
    
    	if (*status) return(0);
    
    	fits_get_hdu_type (infptr, &hdutype, &stat);
    
    	if (hdutype == IMAGE_HDU) {
    	    fits_get_img_param (infptr, 9, &bitpix, &naxis, naxes, &stat);
    	    for (totpix=1, ii=0; ii < 9; ii++) totpix *= naxes[ii];
    	}
    
    	/* check directive keyword to see if this HDU should not be compressed */
            tstatus = 0;
            if (!fits_read_key(infptr, TSTRING, "FZALGOR", fzalgor, NULL, &tstatus) ) {
    	    if (!strcmp(fzalgor, "NONE") || !strcmp(fzalgor, "none") ) {
     	        fits_copy_hdu (infptr, outfptr, 0, &stat);
                }
    	    *status = stat;
    	    return(0);
    	}
    
            /* =============================================================== */
            /* This block is only for  binary table compression */
    	if (hdutype == BINARY_TBL && fpvar.do_tables) { 
    
    	    fits_get_hduaddr(infptr, &headstart, &datastart, &dataend, status); 
    	    datasize = dataend - datastart;
    
    	    if (datasize <= 2880) {
    		/* data is less than 1 FITS block in size, so don't compress */
    	        fits_copy_hdu (infptr, outfptr, 0, &stat);
    	    } else {
    		    fits_compress_table (infptr, outfptr, &stat);
    	    }
    
    	    *status = stat;
    	    return(0);
    	}
            /* =============================================================== */
    
            /* If this is not a non-null image HDU, just copy it verbatim */
    	if (fits_is_compressed_image (infptr,  &stat) || hdutype != IMAGE_HDU ||
    	    naxis == 0 || totpix == 0 || !fpvar.do_images) {
    	        fits_copy_hdu (infptr, outfptr, 0, &stat);
    
    	} else {  /* remaining code deals only with IMAGE HDUs */
    
    		/* special case: rescale a scaled integer image to reduce noise? */
    		if (fpvar.rescale_noise != 0. && bitpix > 0 && bitpix < LONGLONG_IMG) {
    
    		   tstatus = 0;
    		   fits_read_key(infptr, TDOUBLE, "BSCALE", &bscale, 0, &tstatus);
    		   if (tstatus == 0 && bscale != 1.0) {  /* image must be scaled */
    
    			if (bitpix == LONG_IMG)
    			  fp_i4stat(infptr, naxis, naxes, &imagestats, &stat);
    			else
    			  fp_i2stat(infptr, naxis, naxes, &imagestats, &stat);
    
    			/* use the minimum of the MAD 2nd, 3rd, and 5th order noise estimates */
    			noisemin = imagestats.noise3;
    			if (imagestats.noise2 != 0. && imagestats.noise2 < noisemin) noisemin = imagestats.noise2;
    			if (imagestats.noise5 != 0. && imagestats.noise5 < noisemin) noisemin = imagestats.noise5;
    
    			rescale = noisemin / fpvar.rescale_noise;
    			if (rescale > 1.0) {
    			  
    			  /* all the criteria are met, so create a temporary file that */
    			  /* contains a rescaled version of the image, in output directory */
    			  
    			  /* create temporary file name */
    			  fits_file_name(outfptr, outfits, &stat);  /* get the output file name */
    			  fp_tmpnam("Tmp3", outfits, tempfilename3);
    
    			  fits_create_file(&tempfile, tempfilename3, &stat);
    
    			  fits_get_hdu_num(infptr, &hdunum);
    			  if (hdunum != 1) {
    
    			     /* the input hdu is an image extension, so create dummy primary */
    			     fits_create_img(tempfile, 8, 0, naxes, &stat);
    			  }
    
    			  fits_copy_header(infptr, tempfile, &stat); /* copy the header */
    			  
    			  /* rescale the data, so that it will compress more efficiently */
    			  if (bitpix == LONG_IMG)
    			    fp_i4rescale(infptr, naxis, naxes, rescale, tempfile, &stat);
    			  else
    			    fp_i2rescale(infptr, naxis, naxes, rescale, tempfile, &stat);
    
    
    			  /* scale the BSCALE keyword by the inverse factor */
    
    			  bscale = bscale * rescale;  
    			  fits_update_key(tempfile, TDOUBLE, "BSCALE", &bscale, 0, &stat);
    
    			  /* rescan the header, to reset the actual scaling parameters */
    			  fits_set_hdustruc(tempfile, &stat);
    
    		          fits_img_compress (tempfile, outfptr, &stat);
    		          fits_delete_file  (tempfile, &stat);
    		          tempfilename3[0] = '\0';   /* clear the temp filename */
    		          *islossless = 0;  /* used a lossy compression method */
    
    	                  *status = stat;
    	                  return(0);
    			}
    		   }
    		}
    
    		/* if requested to do lossy compression of integer images (by */
    		/* converting to float), then check if this HDU qualifies */
    		if ( (bitpix > 0) && (fpvar.int_to_float != 0) ) {
    		    
    			if (bitpix >= LONG_IMG)
    			  fp_i4stat(infptr, naxis, naxes, &imagestats, &stat);
    			else
    			  fp_i2stat(infptr, naxis, naxes, &imagestats, &stat);
    
    			/* use the minimum of the MAD 2nd, 3rd, and 5th order noise estimates */
    			noisemin = imagestats.noise3;
    			if (imagestats.noise2 != 0. && imagestats.noise2 < noisemin) noisemin = imagestats.noise2;
    			if (imagestats.noise5 != 0. && imagestats.noise5 < noisemin) noisemin = imagestats.noise5;
    
    			if ( (noisemin < (fpvar.n3ratio * fpvar.quantize_level) ) ||
    			    (imagestats.noise3 < fpvar.n3min)) {
    			
    			    /* image contains too little noise to quantize effectively */
    			    fits_set_lossy_int (outfptr, 0, &stat);
    
    			    fits_get_hdu_num(infptr, &hdunum);
    
    printf("    HDU %d does not meet noise criteria to be quantized, so losslessly compressed.\n", hdunum);
    
    			} else {
    			    /* compressed image is not identical to original */
    			    *islossless = 0;
    			}  
    		}
    
                    /* finally, do the actual image compression */
    		fits_img_compress (infptr, outfptr, &stat);
    
    		if (bitpix < 0 || 
    		    (fpvar.comptype == HCOMPRESS_1 && fpvar.scale != 0.)) {
    
    		    /* compressed image is not identical to original */
    		    *islossless = 0;  
    		}
    	}
    
    	*status = stat;
    	return(0);
    }
    
    /*--------------------------------------------------------------------------*/
    int fp_unpack_hdu (fitsfile *infptr, fitsfile *outfptr, fpstate fpvar, int *status)
    {
    	int hdutype, lval;
    
            if (*status > 0) return(0);
    
    	fits_get_hdu_type (infptr, &hdutype, status);
    
            /* =============================================================== */
            /* This block is only for beta testing of binary table compression */
    	if (hdutype == BINARY_TBL) { 
    
    	    fits_read_key(infptr, TLOGICAL, "ZTABLE", &lval, NULL, status);
    	    
    	    if (*status == 0 && lval != 0) {
    	        /*  uncompress the table */
    	        fits_uncompress_table (infptr, outfptr, status);
    	    } else {
    	        if (*status == KEY_NO_EXIST)  /* table is not compressed */
    		    *status = 0;
                    fits_copy_hdu (infptr, outfptr, 0, status);
                }
    
    	    return(0);
            /* =============================================================== */
    
    	} else if (fits_is_compressed_image (infptr,  status)) {
                /* uncompress the compressed image HDU */
                fits_img_decompress (infptr, outfptr, status);
            } else {
                /* not a compressed image HDU, so just copy it to the output */
                fits_copy_hdu (infptr, outfptr, 0, status);
            }
    
    	return(0);
    }
    /*--------------------------------------------------------------------------*/
    int fits_read_image_speed (fitsfile *infptr, float *whole_elapse, 
        float *whole_cpu, float *row_elapse, float *row_cpu, int *status)
    {
            unsigned char *carray, cnull = 0;
    	short *sarray, snull=0;
    	int bitpix, naxis, anynull, *iarray, inull = 0;
    	long ii, naxes[9], fpixel[9]={1,1,1,1,1,1,1,1,1}, lpixel[9]={1,1,1,1,1,1,1,1,1};
    	long inc[9]={1,1,1,1,1,1,1,1,1} ;
    	float *earray, enull = 0, filesize;
    	double *darray, dnull = 0;
    	
    	if (*status) return(*status);
    
    	fits_get_img_param (infptr, 9, &bitpix, &naxis, naxes, status);
    
    	if (naxis != 2)return(*status);
    	
    	lpixel[0] = naxes[0];
    	lpixel[1] = naxes[1];
    	
            /* filesize in MB */
    	filesize = (float) (naxes[0] * abs(bitpix) / 8000000. * naxes[1]);
    
    	/* measure time required to read the raw image */
    	fits_set_bscale(infptr, 1.0, 0.0, status);
    	*whole_elapse = 0.;
    	*whole_cpu = 0;
    
            if (bitpix == BYTE_IMG) {
    		carray = calloc(naxes[1]*naxes[0], sizeof(char));
    
                    /* remove any cached uncompressed tile 
    		  (dangerous to directly modify the structure!) */
             /*       (infptr->Fptr)->tilerow = 0; */
    
    		marktime(status);
    		fits_read_subset(infptr, TBYTE, fpixel, lpixel, inc, &cnull, 
    		      carray, &anynull, status);
    		
    		/* get elapsped times */
    		gettime(whole_elapse, whole_cpu, status);
    
    		/* now read the image again, row by row */
    		if (row_elapse) {
    
                      /* remove any cached uncompressed tile 
    	  	    (dangerous to directly modify the structure!) */
              /*        (infptr->Fptr)->tilerow = 0; */
    
    		  marktime(status);
    		  for (ii = 0; ii < naxes[1]; ii++) {
    		   fpixel[1] = ii+1;
    		   fits_read_pix(infptr, TBYTE, fpixel, naxes[0], &cnull, 
    		      carray, &anynull, status);
    		   }
    		   /* get elapsped times */
    		   gettime(row_elapse, row_cpu, status);
    		}
     		free(carray);
     
    	} else if (bitpix == SHORT_IMG) {
    		sarray = calloc(naxes[0]*naxes[1], sizeof(short));
    
    		marktime(status);
    		fits_read_subset(infptr, TSHORT, fpixel, lpixel, inc, &snull, 
    		      sarray, &anynull, status);
    
    		gettime(whole_elapse, whole_cpu, status);   /* get elapsped times */
    
    		/* now read the image again, row by row */
    		if (row_elapse) {
    		  marktime(status);
    		  for (ii = 0; ii < naxes[1]; ii++) {
    
    		   fpixel[1] = ii+1;
    		   fits_read_pix(infptr, TSHORT, fpixel, naxes[0], &snull, 
    		      sarray, &anynull, status);
    		  }
    		  /* get elapsped times */
    		  gettime(row_elapse, row_cpu, status);
    		}
    
    		free(sarray);	
    
    	} else if (bitpix == LONG_IMG) {
    		iarray = calloc(naxes[0]*naxes[1], sizeof(int));
    
    		marktime(status);
    
    		fits_read_subset(infptr, TINT, fpixel, lpixel, inc, &inull, 
    		      iarray, &anynull, status);
    		
    		/* get elapsped times */
    		gettime(whole_elapse, whole_cpu, status);
    
    
    		/* now read the image again, row by row */
    		if (row_elapse) {
    		  marktime(status);
    		  for (ii = 0; ii < naxes[1]; ii++) {
    		   fpixel[1] = ii+1;
    		   fits_read_pix(infptr, TINT, fpixel, naxes[0], &inull, 
    		      iarray, &anynull, status);
    		  }
    		  /* get elapsped times */
    		  gettime(row_elapse, row_cpu, status);
    		}
    
    
     		free(iarray);	
    
    	} else if (bitpix == FLOAT_IMG)   {
    		earray = calloc(naxes[1]*naxes[0], sizeof(float));
    
    		marktime(status);
    
    		fits_read_subset(infptr, TFLOAT, fpixel, lpixel, inc, &enull, 
    		      earray, &anynull, status);
    		
    		/* get elapsped times */
    		gettime(whole_elapse, whole_cpu, status);
    
    		/* now read the image again, row by row */
    		if (row_elapse) {
    		  marktime(status);
    		  for (ii = 0; ii < naxes[1]; ii++) {
    		   fpixel[1] = ii+1;
    		   fits_read_pix(infptr, TFLOAT, fpixel, naxes[0], &enull, 
    		      earray, &anynull, status);
    		  }
    		  /* get elapsped times */
    		  gettime(row_elapse, row_cpu, status);
    		}
    
     		free(earray);	
    
    	} else if (bitpix == DOUBLE_IMG)  {
    		darray = calloc(naxes[1]*naxes[0], sizeof(double));
    
    		marktime(status);
    
    		fits_read_subset(infptr, TDOUBLE, fpixel, lpixel, inc, &dnull, 
    		      darray, &anynull, status);
    		
    		/* get elapsped times */
    		gettime(whole_elapse, whole_cpu, status);
    
    		/* now read the image again, row by row */
    		if (row_elapse) {
    		  marktime(status);
    		  for (ii = 0; ii < naxes[1]; ii++) {
    		   fpixel[1] = ii+1;
    		   fits_read_pix(infptr, TDOUBLE, fpixel, naxes[0], &dnull, 
    		      darray, &anynull, status);
    		  }
    		  /* get elapsped times */
    		  gettime(row_elapse, row_cpu, status);
    		}
    
    		free(darray);
    	}
    
            if (whole_elapse) *whole_elapse = *whole_elapse / filesize;
            if (row_elapse)   *row_elapse   = *row_elapse / filesize;
            if (whole_cpu)    *whole_cpu    = *whole_cpu / filesize;
            if (row_cpu)      *row_cpu      = *row_cpu / filesize;
    
    	return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int fp_test_hdu (fitsfile *infptr, fitsfile *outfptr, fitsfile *outfptr2, 
    	fpstate fpvar, int *status)
    {
       /*   This routine is only used for performance testing of image HDUs. */
       /*   Use fp_test_table for testing binary table HDUs.    */
    
    	int stat = 0, hdutype, comptype, noloss = 0;
            char ctype[20], lossless[4];
    	long headstart, datastart, dataend;
    	float origdata = 0., compressdata = 0.;
    	float compratio = 0., packcpu = 0., unpackcpu = 0.;
    	float elapse, whole_elapse, row_elapse, whole_cpu, row_cpu;
    	unsigned long datasum1, datasum2, hdusum;
    
    	if (*status) return(0);
    
    	origdata = 0;
    	compressdata = 0;
    	compratio = 0.;
    	lossless[0] = '\0';
    
    	fits_get_compression_type(outfptr, &comptype, &stat);
    	if (comptype == RICE_1)
    		strcpy(ctype, "RICE");
    	else if (comptype == GZIP_1)
    		strcpy(ctype, "GZIP1");
    	else if (comptype == GZIP_2)
    		strcpy(ctype, "GZIP2");/*
    	else if (comptype == BZIP2_1)
    		strcpy(ctype, "BZIP2");
    */
    	else if (comptype == PLIO_1)
    		strcpy(ctype, "PLIO");
    	else if (comptype == HCOMPRESS_1)
    		strcpy(ctype, "HCOMP");
    	else if (comptype == NOCOMPRESS)
    		strcpy(ctype, "NONE");
    	else {
    	      fp_msg ("Error: unsupported image compression type ");
    	      *status = DATA_COMPRESSION_ERR;
    	      return(0);
    	}
    
    	/* -------------- COMPRESS the image ------------------ */
    
    	marktime(&stat);
    	
    	fits_img_compress (infptr, outfptr, &stat);
    
    	/* get elapsped times */
    	gettime(&elapse, &packcpu, &stat);
    
    	/* get elapsed and cpu times need to read the compressed image */
    	fits_read_image_speed (outfptr, &whole_elapse, &whole_cpu, 
    	   &row_elapse, &row_cpu, &stat);
    
            if (!stat) {
    
    		/* -------------- UNCOMPRESS the image ------------------ */
    
                    /* remove any cached uncompressed tile 
    		  (dangerous to directly modify the structure!) */
            /*        (outfptr->Fptr)->tilerow = 0; */
    		marktime(&stat);
    
     	       fits_img_decompress (outfptr, outfptr2, &stat);
    
    		/* get elapsped times */
    		gettime(&elapse, &unpackcpu, &stat);
    
    		/* ----------------------------------------------------- */
    
    
    		/* get sizes of original and compressed images */
    
    		fits_get_hduaddr(infptr, &headstart, &datastart, &dataend, &stat);
    		origdata = (float) ((dataend - datastart)/1000000.);
    		
    		fits_get_hduaddr(outfptr, &headstart, &datastart, &dataend, &stat);
    		compressdata = (float) ((dataend - datastart)/1000000.);
    
    		if (compressdata != 0)
    			compratio = (float) origdata / (float) compressdata;
    
    		/* is this uncompressed image identical to the original? */
    
    		fits_get_chksum(infptr, &datasum1, &hdusum, &stat);	    
    		fits_get_chksum(outfptr2, &datasum2, &hdusum, &stat);
    
    		if ( datasum1 == datasum2) {
    			strcpy(lossless, "Yes");
    			noloss = 1;
    		} else {
    			strcpy(lossless, "No");
    		}
    
    		printf("       %-5s %6.2f %7.2f ->%7.2f %7.2f %7.2f %s %5.3f %5.3f %5.3f %5.3f\n", 
    			ctype, compratio, origdata, compressdata, 
    			packcpu, unpackcpu, lossless, whole_elapse, whole_cpu,
    			row_elapse, row_cpu);
    
    
    		if (fpvar.outfile[0]) {
    		    fprintf(outreport," %6.3f %5.2f %5.2f %s %7.3f %7.3f %7.3f %7.3f", 
    		       compratio, packcpu, unpackcpu, lossless,  whole_elapse, whole_cpu,
    		       row_elapse, row_cpu);
    		}
    
     	       /* delete the output HDUs to concerve disk space */
    
    		fits_delete_hdu(outfptr, &hdutype, &stat);
    		fits_delete_hdu(outfptr2, &hdutype, &stat);
    
    	} else {
    		printf("       %-5s     (unable to compress image)\n", ctype);
    	}
    
    	/* try to recover from any compression errors */
    	if (stat == DATA_COMPRESSION_ERR) stat = 0;
    
    	*status = stat;
            return(0);
    }
    /*--------------------------------------------------------------------------*/
    int fp_test_table (fitsfile *infptr, fitsfile *outfptr, fitsfile *outfptr2, 
    	fpstate fpvar, int *status)
    {
    /* this routine is for performance testing of the beta table compression methods */
    
    	int stat = 0, hdutype, tstatus = 0;
            char fzalgor[FLEN_VALUE];
    	LONGLONG headstart, datastart, dataend;
    	float elapse, cpu;
    
    	if (*status) return(0);
    
    	/* check directive keyword to see if this HDU should not be compressed */
            if (!fits_read_key(infptr, TSTRING, "FZALGOR", fzalgor, NULL, &tstatus) ) {
    	    if (!strcmp(fzalgor, "NONE")  || !strcmp(fzalgor, "none")) {
    		return(0);
                }
    	}
    
            fits_get_hduaddrll(infptr, &headstart, &datastart, &dataend, status); 
    
    	/* can't compress small tables with less than 2880 bytes of data */
            if (dataend - datastart <= 2880) {
    		return(0);
    	}
    
     	marktime(&stat);
            stat= -999;  /* set special flag value */
    	fits_compress_table (infptr, outfptr,  &stat);
    
    	/* get elapsped times */
    	gettime(&elapse, &cpu, &stat);
    
    	fits_delete_hdu(outfptr, &hdutype, &stat);
    
    	printf("\nElapsed time = %f, cpu = %f\n", elapse, cpu);
    
    	fits_report_error (stderr, stat);
    
            return(0);
    }
    /*--------------------------------------------------------------------------*/
    int marktime(int *status)
    {
    #if defined(unix) || defined(__unix__)  || defined(__unix)
            struct  timeval tv;
    /*        struct  timezone tz; */
    
    /*        gettimeofday (&tv, &tz); */
            gettimeofday (&tv, NULL);
    
    	startsec = tv.tv_sec;
            startmilli = tv.tv_usec/1000;
    
            scpu = clock();
    #else
    /* don't support high timing precision on Windows machines */
         	startsec = 0;
            startmilli = 0;
    
            scpu = clock();
    #endif
    	return( *status );
    }
    /*--------------------------------------------------------------------------*/
    int gettime(float *elapse, float *elapscpu, int *status)
    {
    #if defined(unix) || defined(__unix__)  || defined(__unix)
            struct  timeval tv;
    /*        struct  timezone tz; */
    	int stopmilli;
    	long stopsec;
    
    /*        gettimeofday (&tv, &tz); */
            gettimeofday (&tv, NULL);
    	ecpu = clock();
    
            stopmilli = tv.tv_usec/1000;
    	stopsec = tv.tv_sec;
    	
    	*elapse = (stopsec - startsec) + (stopmilli - startmilli)/1000.;
    	*elapscpu = (ecpu - scpu) * 1.0 / CLOCKTICKS;
    /*
    printf(" (start: %ld + %d), stop: (%ld + %d) elapse: %f\n ",
    startsec,startmilli,stopsec, stopmilli, *elapse);
    */
    #else
    /* set the elapsed time the same as the CPU time on Windows machines */
    	*elapscpu = (float) ((ecpu - scpu) * 1.0 / CLOCKTICKS);
    	*elapse = *elapscpu;  
    #endif
    	return( *status );
    }
    /*--------------------------------------------------------------------------*/
    int fp_i2stat(fitsfile *infptr, int naxis, long *naxes, imgstats *imagestats, int *status)
    {
    /*
        read the central XSAMPLE by YSAMPLE region of pixels in the int*2 image, 
        and then compute basic statistics: min, max, mean, sigma, mean diff, etc.
    */
    
    	long fpixel[9] = {1,1,1,1,1,1,1,1,1};
    	long lpixel[9] = {1,1,1,1,1,1,1,1,1};
    	long inc[9]    = {1,1,1,1,1,1,1,1,1};
    	long i1, i2, npix, ngood, nx, ny;
    	short *intarray, minvalue, maxvalue, nullvalue;
    	int anynul, tstatus, checknull = 1;
    	double mean, sigma, noise1, noise2, noise3, noise5;
    	
             /* select the middle XSAMPLE by YSAMPLE area of the image */
    	i1 = naxes[0]/2 - (XSAMPLE/2 - 1);
    	i2 = naxes[0]/2 + (XSAMPLE/2);
    	if (i1 < 1) i1 = 1;
    	if (i2 > naxes[0]) i2 = naxes[0];
    	fpixel[0] = i1;
    	lpixel[0] = i2;
    	nx = i2 - i1 +1;
    
            if (naxis > 1) {
    	    i1 = naxes[1]/2 - (YSAMPLE/2 - 1);
    	    i2 = naxes[1]/2 + (YSAMPLE/2);
    	    if (i1 < 1) i1 = 1;
    	    if (i2 > naxes[1]) i2 = naxes[1];
    	    fpixel[1] = i1;
    	    lpixel[1] = i2;
    	}
    	ny = i2 - i1 +1;
    
    	npix = nx * ny;
    
            /* if there are higher dimensions, read the middle plane of the cube */
    	if (naxis > 2) {
    	    fpixel[2] = naxes[2]/2 + 1;
    	    lpixel[2] = naxes[2]/2 + 1;
    	}
    
    	intarray = calloc(npix, sizeof(short));
    	if (!intarray) {
    		*status = MEMORY_ALLOCATION;
    		return(*status);
    	}
    
    	/* turn off any scaling of the integer pixel values */
    	fits_set_bscale(infptr, 1.0, 0.0, status);
    
    	fits_read_subset_sht(infptr, 0, naxis, naxes, fpixel, lpixel, inc,
    	    0, intarray, &anynul, status);
    
    	/* read the null value keyword (BLANK) if present */
    	tstatus = 0;
    	fits_read_key(infptr, TSHORT, "BLANK", &nullvalue, 0, &tstatus);
    	if (tstatus) {
    	   nullvalue = 0;
    	   checknull = 0;
    	}
    
    	/* compute statistics of the image */
    
            fits_img_stats_short(intarray, nx, ny, checknull, nullvalue, 
    	&ngood, &minvalue, &maxvalue, &mean, &sigma, &noise1, &noise2, &noise3, &noise5, status);
    
    	imagestats->n_nulls = npix - ngood;
    	imagestats->minval = minvalue;
    	imagestats->maxval = maxvalue; 
    	imagestats->mean = mean; 
    	imagestats->sigma = sigma; 
    	imagestats->noise1 = noise1; 
    	imagestats->noise2 = noise2; 
    	imagestats->noise3 = noise3; 
    	imagestats->noise5 = noise5; 
        
    	free(intarray);
    	return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int fp_i4stat(fitsfile *infptr, int naxis, long *naxes, imgstats *imagestats, int *status)
    {
    /*
        read the central XSAMPLE by YSAMPLE region of pixels in the int*2 image, 
        and then compute basic statistics: min, max, mean, sigma, mean diff, etc.
    */
    
    	long fpixel[9] = {1,1,1,1,1,1,1,1,1};
    	long lpixel[9] = {1,1,1,1,1,1,1,1,1};
    	long inc[9]    = {1,1,1,1,1,1,1,1,1};
    	long i1, i2, npix, ngood, nx, ny;
    	int *intarray, minvalue, maxvalue, nullvalue;
    	int anynul, tstatus, checknull = 1;
    	double mean, sigma, noise1, noise2, noise3, noise5;
    	
             /* select the middle XSAMPLE by YSAMPLE area of the image */
    	i1 = naxes[0]/2 - (XSAMPLE/2 - 1);
    	i2 = naxes[0]/2 + (XSAMPLE/2);
    	if (i1 < 1) i1 = 1;
    	if (i2 > naxes[0]) i2 = naxes[0];
    	fpixel[0] = i1;
    	lpixel[0] = i2;
    	nx = i2 - i1 +1;
    
            if (naxis > 1) {
    	    i1 = naxes[1]/2 - (YSAMPLE/2 - 1);
    	    i2 = naxes[1]/2 + (YSAMPLE/2);
    	    if (i1 < 1) i1 = 1;
    	    if (i2 > naxes[1]) i2 = naxes[1];
    	    fpixel[1] = i1;
    	    lpixel[1] = i2;
    	}
    	ny = i2 - i1 +1;
    
    	npix = nx * ny;
    
            /* if there are higher dimensions, read the middle plane of the cube */
    	if (naxis > 2) {
    	    fpixel[2] = naxes[2]/2 + 1;
    	    lpixel[2] = naxes[2]/2 + 1;
    	}
    
    	intarray = calloc(npix, sizeof(int));
    	if (!intarray) {
    		*status = MEMORY_ALLOCATION;
    		return(*status);
    	}
    
    	/* turn off any scaling of the integer pixel values */
    	fits_set_bscale(infptr, 1.0, 0.0, status);
    
    	fits_read_subset_int(infptr, 0, naxis, naxes, fpixel, lpixel, inc,
    	    0, intarray, &anynul, status);
    
    	/* read the null value keyword (BLANK) if present */
    	tstatus = 0;
    	fits_read_key(infptr, TINT, "BLANK", &nullvalue, 0, &tstatus);
    	if (tstatus) {
    	   nullvalue = 0;
    	   checknull = 0;
    	}
    
    	/* compute statistics of the image */
    
            fits_img_stats_int(intarray, nx, ny, checknull, nullvalue, 
    	&ngood, &minvalue, &maxvalue, &mean, &sigma, &noise1, &noise2, &noise3, &noise5, status);
    
    	imagestats->n_nulls = npix - ngood;
    	imagestats->minval = minvalue;
    	imagestats->maxval = maxvalue; 
    	imagestats->mean = mean; 
    	imagestats->sigma = sigma; 
    	imagestats->noise1 = noise1; 
    	imagestats->noise2 = noise2; 
    	imagestats->noise3 = noise3; 
    	imagestats->noise5 = noise5; 
        
    	free(intarray);
    	return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int fp_r4stat(fitsfile *infptr, int naxis, long *naxes, imgstats *imagestats, int *status)
    {
    /*
        read the central XSAMPLE by YSAMPLE region of pixels in the int*2 image, 
        and then compute basic statistics: min, max, mean, sigma, mean diff, etc.
    */
    
    	long fpixel[9] = {1,1,1,1,1,1,1,1,1};
    	long lpixel[9] = {1,1,1,1,1,1,1,1,1};
    	long inc[9]    = {1,1,1,1,1,1,1,1,1};
    	long i1, i2, npix, ngood, nx, ny;
    	float *array, minvalue, maxvalue, nullvalue = FLOATNULLVALUE;
    	int anynul,checknull = 1;
    	double mean, sigma, noise1, noise2, noise3, noise5;
    	
             /* select the middle XSAMPLE by YSAMPLE area of the image */
    	i1 = naxes[0]/2 - (XSAMPLE/2 - 1);
    	i2 = naxes[0]/2 + (XSAMPLE/2);
    	if (i1 < 1) i1 = 1;
    	if (i2 > naxes[0]) i2 = naxes[0];
    	fpixel[0] = i1;
    	lpixel[0] = i2;
    	nx = i2 - i1 +1;
    
            if (naxis > 1) {
    	    i1 = naxes[1]/2 - (YSAMPLE/2 - 1);
    	    i2 = naxes[1]/2 + (YSAMPLE/2);
    	    if (i1 < 1) i1 = 1;
    	    if (i2 > naxes[1]) i2 = naxes[1];
    	    fpixel[1] = i1;
    	    lpixel[1] = i2;
    	}
    	ny = i2 - i1 +1;
    
    	npix = nx * ny;
    
            /* if there are higher dimensions, read the middle plane of the cube */
    	if (naxis > 2) {
    	    fpixel[2] = naxes[2]/2 + 1;
    	    lpixel[2] = naxes[2]/2 + 1;
    	}
    
    	array = calloc(npix, sizeof(float));
    	if (!array) {
    		*status = MEMORY_ALLOCATION;
    		return(*status);
    	}
    
    	fits_read_subset_flt(infptr, 0, naxis, naxes, fpixel, lpixel, inc,
    	    nullvalue, array, &anynul, status);
    
    	/* are there any null values in the array? */
    	if (!anynul) {
    	   nullvalue = 0.;
    	   checknull = 0;
    	}
    
    	/* compute statistics of the image */
    
            fits_img_stats_float(array, nx, ny, checknull, nullvalue, 
    	&ngood, &minvalue, &maxvalue, &mean, &sigma, &noise1, &noise2, &noise3, &noise5, status);
    
    	imagestats->n_nulls = npix - ngood;
    	imagestats->minval = minvalue;
    	imagestats->maxval = maxvalue; 
    	imagestats->mean = mean; 
    	imagestats->sigma = sigma; 
    	imagestats->noise1 = noise1; 
    	imagestats->noise2 = noise2; 
    	imagestats->noise3 = noise3; 
    	imagestats->noise5 = noise5; 
        
    	free(array);
    	return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int fp_i2rescale(fitsfile *infptr, int naxis, long *naxes, double rescale,
        fitsfile *outfptr, int *status)
    {
    /*
        divide the integer pixel values in the input file by rescale,
        and write back out to the output file..
    */
    
    	long ii, jj, nelem = 1, nx, ny;
    	short *intarray, nullvalue;
    	int anynul, tstatus, checknull = 1;
    	
    	nx = naxes[0];
    	ny = 1;
    	
    	for (ii = 1; ii < naxis; ii++) {
    	    ny = ny * naxes[ii];
    	}
    
    	intarray = calloc(nx, sizeof(short));
    	if (!intarray) {
    		*status = MEMORY_ALLOCATION;
    		return(*status);
    	}
    
    	/* read the null value keyword (BLANK) if present */
    	tstatus = 0;
    	fits_read_key(infptr, TSHORT, "BLANK", &nullvalue, 0, &tstatus);
    	if (tstatus) {
    	   checknull = 0;
    	}
    
    	/* turn off any scaling of the integer pixel values */
    	fits_set_bscale(infptr,  1.0, 0.0, status);
    	fits_set_bscale(outfptr, 1.0, 0.0, status);
    
    	for (ii = 0; ii < ny; ii++) {
    
    	    fits_read_img_sht(infptr, 1, nelem, nx,
    	        0, intarray, &anynul, status);
    
    	    if (checknull) {
    	        for (jj = 0; jj < nx; jj++) {
    	            if (intarray[jj] != nullvalue)
    		        intarray[jj] = NSHRT( (intarray[jj] / rescale) );
    		}
    	    } else {
    	        for (jj = 0; jj < nx; jj++)
    		        intarray[jj] = NSHRT( (intarray[jj] / rescale) );
    	    }
    
    	    fits_write_img_sht(outfptr, 1, nelem, nx, intarray, status);
    	      
    	    nelem += nx;
    	}
    
    	free(intarray);
    	return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int fp_i4rescale(fitsfile *infptr, int naxis, long *naxes, double rescale,
        fitsfile *outfptr, int *status)
    {
    /*
        divide the integer pixel values in the input file by rescale,
        and write back out to the output file..
    */
    
    	long ii, jj, nelem = 1, nx, ny;
    	int *intarray, nullvalue;
    	int anynul, tstatus, checknull = 1;
    	
    	nx = naxes[0];
    	ny = 1;
    	
    	for (ii = 1; ii < naxis; ii++) {
    	    ny = ny * naxes[ii];
    	}
    
    	intarray = calloc(nx, sizeof(int));
    	if (!intarray) {
    		*status = MEMORY_ALLOCATION;
    		return(*status);
    	}
    
    	/* read the null value keyword (BLANK) if present */
    	tstatus = 0;
    	fits_read_key(infptr, TINT, "BLANK", &nullvalue, 0, &tstatus);
    	if (tstatus) {
    	   checknull = 0;
    	}
    
    	/* turn off any scaling of the integer pixel values */
    	fits_set_bscale(infptr,  1.0, 0.0, status);
    	fits_set_bscale(outfptr, 1.0, 0.0, status);
    
    	for (ii = 0; ii < ny; ii++) {
    
    	    fits_read_img_int(infptr, 1, nelem, nx,
    	        0, intarray, &anynul, status);
    
    	    if (checknull) {
    	        for (jj = 0; jj < nx; jj++) {
    	            if (intarray[jj] != nullvalue)
    		        intarray[jj] = NINT( (intarray[jj] / rescale) );
    		}
    	    } else {
    	        for (jj = 0; jj < nx; jj++)
    		        intarray[jj] = NINT( (intarray[jj] / rescale) );
    	    }
    
    	    fits_write_img_int(outfptr, 1, nelem, nx, intarray, status);
    	      
    	    nelem += nx;
    	}
    
    	free(intarray);
    	return(*status);
    }
    /* ========================================================================
     * Signal and error handler.
     */
    void abort_fpack(int sig)
    {
         /* clean up by deleting temporary files */
         
          if (tempfilename[0]) {
             remove(tempfilename);
          }
          if (tempfilename2[0]) {
             remove(tempfilename2);
          }
          if (tempfilename3[0]) {
             remove(tempfilename3);
          }
          exit(-1);
    }
    healpy-1.8.1/cfitsio/iter_c.f0000654000175000017530000002443512272000775016501 0ustar  zoncaplanck00000000000000      program f77iterate_c
    C
    C    This example program illustrates how to use the CFITSIO iterator function.
    C
    C    This program creates a 2D histogram of the X and Y columns of an event
    C    list.  The 'main' routine just creates the empty new image, then executes
    C    the 'writehisto' work function by calling the CFITSIO iterator function.
    C
    C    'writehisto' opens the FITS event list that contains the X and Y columns.
    C    It then calls a second work function, calchisto, (by recursively calling
    C    the CFITSIO iterator function) which actually computes the 2D histogram.
    
    C     external work function to be passed to the iterator
          external writehisto
    
          integer ncols
          parameter (ncols=1)
          integer units(ncols), colnum(ncols), datatype(ncols)
          integer iotype(ncols), offset, n_per_loop, status
          character*70 colname(ncols)
    
          integer naxes(2), ounit, blocksize
          character*80 fname
          logical exists
    
    C     include f77.inc -------------------------------------
    C     Codes for FITS extension types
          integer IMAGE_HDU, ASCII_TBL, BINARY_TBL
          parameter (
         &     IMAGE_HDU  = 0,
         &     ASCII_TBL  = 1,
         &     BINARY_TBL = 2  )
    
    C     Codes for FITS table data types
    
          integer TBIT,TBYTE,TLOGICAL,TSTRING,TSHORT,TINT
          integer TFLOAT,TDOUBLE,TCOMPLEX,TDBLCOMPLEX
          parameter (
         &     TBIT        =   1,
         &     TBYTE       =  11,
         &     TLOGICAL    =  14,
         &     TSTRING     =  16,
         &     TSHORT      =  21,
         &     TINT        =  31,
         &     TFLOAT      =  42,
         &     TDOUBLE     =  82,
         &     TCOMPLEX    =  83,
         &     TDBLCOMPLEX = 163  )
    
    C     Codes for iterator column types
    
          integer InputCol, InputOutputCol, OutputCol
          parameter (
         &     InputCol       = 0,
         &     InputOutputCol = 1,
         &     OutputCol      = 2  )
    C     End of f77.inc -------------------------------------
    
    C**********************************************************************
    C     Need to make these variables available to the 2 work functions
          integer xsize,ysize,xbinsize,ybinsize
          common /histcomm/ xsize,ysize,xbinsize,ybinsize
    C**********************************************************************
    
          status = 0
    
          xsize = 480
          ysize = 480
          xbinsize = 32
          ybinsize = 32
    
          fname = 'histoimg.fit'
          ounit = 15
    
    C     delete previous version of the file if it exists
          inquire(file=fname,exist=exists)
          if( exists ) then
             open(ounit,file=fname,status='old')
             close(ounit,status='delete')
          endif
     99   blocksize = 2880
    
    C     create new output image
          call ftinit(ounit,fname,blocksize,status)
    
          naxes(1) = xsize
          naxes(2) = ysize
    
    C     create primary HDU
          call ftiimg(ounit,32,2,naxes,status)
    
          units(1) = ounit
    
    C     Define column as TINT and Output
          datatype(1) = TINT
          iotype(1) = OutputCol
    
    C     force whole array to be passed at one time
          n_per_loop = -1
          offset = 0
    
    C     execute the function to create and write the 2D histogram
          print *,'Calling writehisto iterator work function... ',status
    
          call ftiter( ncols, units, colnum, colname, datatype, iotype,
         &      offset, n_per_loop, writehisto, 0, status )
    
          call ftclos(ounit, status)
    
    C     print out error messages if problem
          if (status.ne.0) then
             call ftrprt('STDERR', status)
          else
            print *,'Program completed successfully.'
          endif
    
          stop
          end
    
    C--------------------------------------------------------------------------
    C
    C   Sample iterator function.
    C
    C   Iterator work function that writes out the 2D histogram.
    C   The histogram values are calculated by another work function, calchisto.
    C
    C--------------------------------------------------------------------------
          subroutine writehisto(totaln, offset, firstn, nvalues, narrays,
         &     units_out, colnum_out, datatype_out, iotype_out, repeat,
         &     status, userData, histogram )
    
          integer totaln,offset,firstn,nvalues,narrays,status
          integer units_out(narrays),colnum_out(narrays)
          integer datatype_out(narrays),iotype_out(narrays)
          integer repeat(narrays)
          integer histogram(*), userData
    
          external calchisto
          integer ncols
          parameter (ncols=2)
          integer units(ncols), colnum(ncols), datatype(ncols)
          integer iotype(ncols), rowoffset, rows_per_loop
          character*70 colname(ncols)
    
          integer iunit, blocksize
          character*80 fname
    
    C     include f77.inc -------------------------------------
    C     Codes for FITS extension types
          integer IMAGE_HDU, ASCII_TBL, BINARY_TBL
          parameter (
         &     IMAGE_HDU  = 0,
         &     ASCII_TBL  = 1,
         &     BINARY_TBL = 2  )
    
    C     Codes for FITS table data types
    
          integer TBIT,TBYTE,TLOGICAL,TSTRING,TSHORT,TINT
          integer TFLOAT,TDOUBLE,TCOMPLEX,TDBLCOMPLEX
          parameter (
         &     TBIT        =   1,
         &     TBYTE       =  11,
         &     TLOGICAL    =  14,
         &     TSTRING     =  16,
         &     TSHORT      =  21,
         &     TINT        =  31,
         &     TFLOAT      =  42,
         &     TDOUBLE     =  82,
         &     TCOMPLEX    =  83,
         &     TDBLCOMPLEX = 163  )
    
    C     Codes for iterator column types
    
          integer InputCol, InputOutputCol, OutputCol
          parameter (
         &     InputCol       = 0,
         &     InputOutputCol = 1,
         &     OutputCol      = 2  )
    C     End of f77.inc -------------------------------------
    
    C**********************************************************************
    C     Need to make these variables available to the 2 work functions
          integer xsize,ysize,xbinsize,ybinsize
          common /histcomm/ xsize,ysize,xbinsize,ybinsize
    C**********************************************************************
    
          if (status .ne. 0) return
    
    C     name of FITS table
          fname = 'iter_c.fit'
          iunit = 16
    
    C     do sanity checking of input values
          if (totaln .ne. nvalues) then
    C     whole image must be passed at one time
             status = -1
             return
          endif
    
          if (narrays .ne. 1) then
    C     number of images is incorrect
             status = -2
             return
          endif
    
          if (datatype_out(1) .ne. TINT) then
    C     input array has wrong data type
             status = -3
             return
          endif
    
    C     open the file and move to the table containing the X and Y columns
          call ftopen(iunit,fname,0,blocksize,status)
          call ftmnhd(iunit, BINARY_TBL, 'EVENTS', 0, status)
          if (status) return
       
    C     both the columns are in the same FITS file
          units(1) = iunit
          units(2) = iunit
    
    C     desired datatype for each column: TINT
          datatype(1) = TINT
          datatype(2) = TINT
    
    C     names of the columns
          colname(1) = 'X'
          colname(2) = 'Y'
    
    C     leave column numbers undefined
          colnum(1) = 0
          colnum(2) = 0
    
    C     define whether columns are input, input/output, or output only
    C     Both input
          iotype(1) = InputCol
          iotype(1) = InputCol
     
    C     take default number of rows per iteration
          rows_per_loop = 0
          rowoffset = 0
    
    C     calculate the histogram
          print *,'Calling calchisto iterator work function... ', status
    
          call ftiter( ncols, units, colnum, colname, datatype, iotype,
         &      rowoffset, rows_per_loop, calchisto, histogram, status )
    
          call ftclos(iunit,status)
          return
          end
    
    C--------------------------------------------------------------------------
    C
    C   Iterator work function that calculates values for the 2D histogram.
    C
    C--------------------------------------------------------------------------
          subroutine calchisto(totalrows, offset, firstrow, nrows, ncols,
         &     units, colnum, datatype, iotype, repeat, status, 
         &     histogram, xcol, ycol )
    
          integer totalrows,offset,firstrow,nrows,ncols,status
          integer units(ncols),colnum(ncols),datatype(ncols)
          integer iotype(ncols),repeat(ncols)
          integer histogram(*),xcol(*),ycol(*)
    C     include f77.inc -------------------------------------
    C     Codes for FITS extension types
          integer IMAGE_HDU, ASCII_TBL, BINARY_TBL
          parameter (
         &     IMAGE_HDU  = 0,
         &     ASCII_TBL  = 1,
         &     BINARY_TBL = 2  )
    
    C     Codes for FITS table data types
    
          integer TBIT,TBYTE,TLOGICAL,TSTRING,TSHORT,TINT
          integer TFLOAT,TDOUBLE,TCOMPLEX,TDBLCOMPLEX
          parameter (
         &     TBIT        =   1,
         &     TBYTE       =  11,
         &     TLOGICAL    =  14,
         &     TSTRING     =  16,
         &     TSHORT      =  21,
         &     TINT        =  31,
         &     TFLOAT      =  42,
         &     TDOUBLE     =  82,
         &     TCOMPLEX    =  83,
         &     TDBLCOMPLEX = 163  )
    
    C     Codes for iterator column types
    
          integer InputCol, InputOutputCol, OutputCol
          parameter (
         &     InputCol       = 0,
         &     InputOutputCol = 1,
         &     OutputCol      = 2  )
    C     End of f77.inc -------------------------------------
    
          integer ii, ihisto, xbin, ybin
    
    C**********************************************************************
    C     Need to make these variables available to the 2 work functions
          integer xsize,ysize,xbinsize,ybinsize
          common /histcomm/ xsize,ysize,xbinsize,ybinsize
    C**********************************************************************
    
          if (status .ne. 0) return
    
    C    --------------------------------------------------------
    C      Initialization procedures: execute on the first call  
    C    --------------------------------------------------------
          if (firstrow .eq. 1) then
    C     do sanity checking of input values
    
             if (ncols .ne. 2) then
    C     number of arrays is incorrect
                status = -4
                return
             endif
    
             if (datatype(1).ne.TINT .or. datatype(2).ne.TINT) then
    C     wrong datatypes
                status = -5
                return
             endif
    
    C     initialize the histogram image pixels = 0, including null value
             do 10 ii = 1, xsize * ysize + 1
                histogram(ii) = 0
     10     continue
    
          endif
    
    C     ------------------------------------------------------------------
    C       Main loop: increment the 2D histogram at position of each event 
    C     ------------------------------------------------------------------
    
          do 20 ii=2,nrows+1
            xbin = xcol(ii) / xbinsize
            ybin = ycol(ii) / ybinsize
    
            ihisto = ( ybin * xsize ) + xbin + 2
            histogram(ihisto) = histogram(ihisto) + 1
     20   continue
    
          return
          end
    
    healpy-1.8.1/cfitsio/putcolj.c0000654000175000017530000021102512272000775016702 0ustar  zoncaplanck00000000000000/*  This file, putcolj.c, contains routines that write data elements to    */
    /*  a FITS image or table, with long datatype.                             */
    
    /*  The FITSIO software was written by William Pence at the High Energy    */
    /*  Astrophysic Science Archive Research Center (HEASARC) at the NASA      */
    /*  Goddard Space Flight Center.                                           */
    
    #include 
    #include 
    #include 
    #include "fitsio2.h"
    
    /*--------------------------------------------------------------------------*/
    int ffpprj( fitsfile *fptr,  /* I - FITS file pointer                       */
                long  group,     /* I - group to write(1 = 1st group)           */
                LONGLONG  firstelem, /* I - first vector element to write(1 = 1st)  */
                LONGLONG  nelem,     /* I - number of values to write               */
                long  *array,    /* I - array of values that are written        */
                int  *status)    /* IO - error status                           */
    /*
      Write an array of values to the primary array. Data conversion
      and scaling will be performed if necessary (e.g, if the datatype of
      the FITS array is not the same as the array being written).
    */
    {
        long row;
        long nullvalue;
    
        /*
          the primary array is represented as a binary table:
          each group of the primary array is a row in the table,
          where the first column contains the group parameters
          and the second column contains the image itself.
        */
    
        if (fits_is_compressed_image(fptr, status))
        {
            /* this is a compressed image in a binary table */
    
            fits_write_compressed_pixels(fptr, TLONG, firstelem, nelem,
                0, array, &nullvalue, status);
            return(*status);
        }
    
        row=maxvalue(1,group);
    
        ffpclj(fptr, 2, row, firstelem, nelem, array, status);
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffppnj( fitsfile *fptr,  /* I - FITS file pointer                       */
                long  group,     /* I - group to write(1 = 1st group)           */
                LONGLONG  firstelem, /* I - first vector element to write(1 = 1st)  */
                LONGLONG  nelem,     /* I - number of values to write               */
                long  *array,    /* I - array of values that are written        */
                long  nulval,    /* I - undefined pixel value                   */
                int  *status)    /* IO - error status                           */
    /*
      Write an array of values to the primary array. Data conversion
      and scaling will be performed if necessary (e.g, if the datatype of the
      FITS array is not the same as the array being written).  Any array values
      that are equal to the value of nulval will be replaced with the null
      pixel value that is appropriate for this column.
    */
    {
        long row;
        long nullvalue;
    
        /*
          the primary array is represented as a binary table:
          each group of the primary array is a row in the table,
          where the first column contains the group parameters
          and the second column contains the image itself.
        */
    
        if (fits_is_compressed_image(fptr, status))
        {
            /* this is a compressed image in a binary table */
    
            nullvalue = nulval;  /* set local variable */
            fits_write_compressed_pixels(fptr, TLONG, firstelem, nelem,
                1, array, &nullvalue, status);
            return(*status);
        }
    
        row=maxvalue(1,group);
    
        ffpcnj(fptr, 2, row, firstelem, nelem, array, nulval, status);
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffp2dj(fitsfile *fptr,   /* I - FITS file pointer                     */
               long  group,      /* I - group to write(1 = 1st group)         */
               LONGLONG  ncols,      /* I - number of pixels in each row of array */
               LONGLONG  naxis1,     /* I - FITS image NAXIS1 value               */
               LONGLONG  naxis2,     /* I - FITS image NAXIS2 value               */
               long  *array,     /* I - array to be written                   */
               int  *status)     /* IO - error status                         */
    /*
      Write an entire 2-D array of values to the primary array. Data conversion
      and scaling will be performed if necessary (e.g, if the datatype of the
      FITS array is not the same as the array being written).
    */
    {
    
        /* call the 3D writing routine, with the 3rd dimension = 1 */
    
        ffp3dj(fptr, group, ncols, naxis2, naxis1, naxis2, 1, array, status);
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffp3dj(fitsfile *fptr,   /* I - FITS file pointer                     */
               long  group,      /* I - group to write(1 = 1st group)         */
               LONGLONG  ncols,      /* I - number of pixels in each row of array */
               LONGLONG  nrows,      /* I - number of rows in each plane of array */
               LONGLONG  naxis1,     /* I - FITS image NAXIS1 value               */
               LONGLONG  naxis2,     /* I - FITS image NAXIS2 value               */
               LONGLONG  naxis3,     /* I - FITS image NAXIS3 value               */
               long  *array,     /* I - array to be written                   */
               int  *status)     /* IO - error status                         */
    /*
      Write an entire 3-D cube of values to the primary array. Data conversion
      and scaling will be performed if necessary (e.g, if the datatype of the
      FITS array is not the same as the array being written).
    */
    {
        long tablerow, ii, jj;
        long fpixel[3]= {1,1,1}, lpixel[3];
        LONGLONG nfits, narray;
        /*
          the primary array is represented as a binary table:
          each group of the primary array is a row in the table,
          where the first column contains the group parameters
          and the second column contains the image itself.
        */
               
        if (fits_is_compressed_image(fptr, status))
        {
            /* this is a compressed image in a binary table */
            lpixel[0] = (long) ncols;
            lpixel[1] = (long) nrows;
            lpixel[2] = (long) naxis3;
           
            fits_write_compressed_img(fptr, TLONG, fpixel, lpixel,
                0,  array, NULL, status);
        
            return(*status);
        }
    
        tablerow=maxvalue(1,group);
    
        if (ncols == naxis1 && nrows == naxis2)  /* arrays have same size? */
        {
          /* all the image pixels are contiguous, so write all at once */
          ffpclj(fptr, 2, tablerow, 1L, naxis1 * naxis2 * naxis3, array, status);
          return(*status);
        }
    
        if (ncols < naxis1 || nrows < naxis2)
           return(*status = BAD_DIMEN);
    
        nfits = 1;   /* next pixel in FITS image to write to */
        narray = 0;  /* next pixel in input array to be written */
    
        /* loop over naxis3 planes in the data cube */
        for (jj = 0; jj < naxis3; jj++)
        {
          /* loop over the naxis2 rows in the FITS image, */
          /* writing naxis1 pixels to each row            */
    
          for (ii = 0; ii < naxis2; ii++)
          {
           if (ffpclj(fptr, 2, tablerow, nfits, naxis1,&array[narray],status) > 0)
             return(*status);
    
           nfits += naxis1;
           narray += ncols;
          }
          narray += (nrows - naxis2) * ncols;
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffpssj(fitsfile *fptr,   /* I - FITS file pointer                       */
               long  group,      /* I - group to write(1 = 1st group)           */
               long  naxis,      /* I - number of data axes in array            */
               long  *naxes,     /* I - size of each FITS axis                  */
               long  *fpixel,    /* I - 1st pixel in each axis to write (1=1st) */
               long  *lpixel,    /* I - last pixel in each axis to write        */
               long *array,      /* I - array to be written                     */
               int  *status)     /* IO - error status                           */
    /*
      Write a subsection of pixels to the primary array or image.
      A subsection is defined to be any contiguous rectangular
      array of pixels within the n-dimensional FITS data file.
      Data conversion and scaling will be performed if necessary 
      (e.g, if the datatype of the FITS array is not the same as
      the array being written).
    */
    {
        long tablerow;
        LONGLONG fpix[7], dimen[7], astart, pstart;
        LONGLONG off2, off3, off4, off5, off6, off7;
        LONGLONG st10, st20, st30, st40, st50, st60, st70;
        LONGLONG st1, st2, st3, st4, st5, st6, st7;
        long ii, i1, i2, i3, i4, i5, i6, i7, irange[7];
    
        if (*status > 0)
            return(*status);
    
        if (fits_is_compressed_image(fptr, status))
        {
            /* this is a compressed image in a binary table */
    
            fits_write_compressed_img(fptr, TLONG, fpixel, lpixel,
                0,  array, NULL, status);
        
            return(*status);
        }
    
        if (naxis < 1 || naxis > 7)
          return(*status = BAD_DIMEN);
    
        tablerow=maxvalue(1,group);
    
         /* calculate the size and number of loops to perform in each dimension */
        for (ii = 0; ii < 7; ii++)
        {
          fpix[ii]=1;
          irange[ii]=1;
          dimen[ii]=1;
        }
    
        for (ii = 0; ii < naxis; ii++)
        {    
          fpix[ii]=fpixel[ii];
          irange[ii]=lpixel[ii]-fpixel[ii]+1;
          dimen[ii]=naxes[ii];
        }
    
        i1=irange[0];
    
        /* compute the pixel offset between each dimension */
        off2 =     dimen[0];
        off3 = off2 * dimen[1];
        off4 = off3 * dimen[2];
        off5 = off4 * dimen[3];
        off6 = off5 * dimen[4];
        off7 = off6 * dimen[5];
    
        st10 = fpix[0];
        st20 = (fpix[1] - 1) * off2;
        st30 = (fpix[2] - 1) * off3;
        st40 = (fpix[3] - 1) * off4;
        st50 = (fpix[4] - 1) * off5;
        st60 = (fpix[5] - 1) * off6;
        st70 = (fpix[6] - 1) * off7;
    
        /* store the initial offset in each dimension */
        st1 = st10;
        st2 = st20;
        st3 = st30;
        st4 = st40;
        st5 = st50;
        st6 = st60;
        st7 = st70;
    
        astart = 0;
    
        for (i7 = 0; i7 < irange[6]; i7++)
        {
         for (i6 = 0; i6 < irange[5]; i6++)
         {
          for (i5 = 0; i5 < irange[4]; i5++)
          {
           for (i4 = 0; i4 < irange[3]; i4++)
           {
            for (i3 = 0; i3 < irange[2]; i3++)
            {
             pstart = st1 + st2 + st3 + st4 + st5 + st6 + st7;
    
             for (i2 = 0; i2 < irange[1]; i2++)
             {
               if (ffpclj(fptr, 2, tablerow, pstart, i1, &array[astart],
                  status) > 0)
                  return(*status);
    
               astart += i1;
               pstart += off2;
             }
             st2 = st20;
             st3 = st3+off3;    
            }
            st3 = st30;
            st4 = st4+off4;
           }
           st4 = st40;
           st5 = st5+off5;
          }
          st5 = st50;
          st6 = st6+off6;
         }
         st6 = st60;
         st7 = st7+off7;
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffpgpj( fitsfile *fptr,   /* I - FITS file pointer                      */
                long  group,      /* I - group to write(1 = 1st group)          */
                long  firstelem,  /* I - first vector element to write(1 = 1st) */
                long  nelem,      /* I - number of values to write              */
                long  *array,     /* I - array of values that are written       */
                int  *status)     /* IO - error status                          */
    /*
      Write an array of group parameters to the primary array. Data conversion
      and scaling will be performed if necessary (e.g, if the datatype of
      the FITS array is not the same as the array being written).
    */
    {
        long row;
    
        /*
          the primary array is represented as a binary table:
          each group of the primary array is a row in the table,
          where the first column contains the group parameters
          and the second column contains the image itself.
        */
    
        row=maxvalue(1,group);
    
        ffpclj(fptr, 1L, row, firstelem, nelem, array, status);
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffpclj( fitsfile *fptr,  /* I - FITS file pointer                       */
                int  colnum,     /* I - number of column to write (1 = 1st col) */
                LONGLONG  firstrow,  /* I - first row to write (1 = 1st row)        */
                LONGLONG  firstelem, /* I - first vector element to write (1 = 1st) */
                LONGLONG  nelem,     /* I - number of values to write               */
                long  *array,    /* I - array of values to write                */
                int  *status)    /* IO - error status                           */
    /*
      Write an array of values to a column in the current FITS HDU.
      The column number may refer to a real column in an ASCII or binary table, 
      or it may refer to a virtual column in a 1 or more grouped FITS primary
      array.  FITSIO treats a primary array as a binary table
      with 2 vector columns: the first column contains the group parameters (often
      with length = 0) and the second column contains the array of image pixels.
      Each row of the table represents a group in the case of multigroup FITS
      images.
    
      The input array of values will be converted to the datatype of the column 
      and will be inverse-scaled by the FITS TSCALn and TZEROn values if necessary.
    */
    {
        int tcode, maxelem2, hdutype, writeraw;
        long twidth, incre;
        long ntodo;
        LONGLONG repeat, startpos, elemnum, wrtptr, rowlen, rownum, remain, next, tnull, maxelem;
        double scale, zero;
        char tform[20], cform[20];
        char message[FLEN_ERRMSG];
    
        char snull[20];   /*  the FITS null value  */
    
        double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */
        void *buffer;
    
        if (*status > 0)           /* inherit input status value if > 0 */
            return(*status);
    
        buffer = cbuff;
    
        /*---------------------------------------------------*/
        /*  Check input and get parameters about the column: */
        /*---------------------------------------------------*/
        if (ffgcprll( fptr, colnum, firstrow, firstelem, nelem, 1, &scale, &zero,
            tform, &twidth, &tcode, &maxelem2, &startpos,  &elemnum, &incre,
            &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0)
            return(*status);
        maxelem = maxelem2;
    
        if (tcode == TSTRING)   
             ffcfmt(tform, cform);     /* derive C format for writing strings */
    
        /*
           if there is no scaling and the native machine format is not byteswapped
           then we can simply write the raw data bytes into the FITS file if the
           datatype of the FITS column is the same as the input values.  Otherwise
           we must convert the raw values into the scaled and/or machine dependent
           format in a temporary buffer that has been allocated for this purpose.
        */
        if (scale == 1. && zero == 0. && 
           MACHINE == NATIVE && tcode == TLONG && LONGSIZE == 32)
        {
            writeraw = 1;
            if (nelem < (LONGLONG)INT32_MAX) {
                maxelem = nelem;
            } else {
                maxelem = INT32_MAX/8;
            }
        }
        else
            writeraw = 0;
    
        /*---------------------------------------------------------------------*/
        /*  Now write the pixels to the FITS column.                           */
        /*  First call the ffXXfYY routine to  (1) convert the datatype        */
        /*  if necessary, and (2) scale the values by the FITS TSCALn and      */
        /*  TZEROn linear scaling parameters into a temporary buffer.          */
        /*---------------------------------------------------------------------*/
        remain = nelem;           /* remaining number of values to write  */
        next = 0;                 /* next element in array to be written  */
        rownum = 0;               /* row number, relative to firstrow     */
    
        while (remain)
        {
            /* limit the number of pixels to process a one time to the number that
               will fit in the buffer space or to the number of pixels that remain
               in the current vector, which ever is smaller.
            */
            ntodo = (long) minvalue(remain, maxelem);      
            ntodo = (long) minvalue(ntodo, (repeat - elemnum));
    
            wrtptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * incre);
    
            ffmbyt(fptr, wrtptr, IGNORE_EOF, status); /* move to write position */
    
            switch (tcode) 
            {
                case (TLONG):
                  if (writeraw)
                  {
                    /* write raw input bytes without conversion */
                    ffpi4b(fptr, ntodo, incre, (INT32BIT *) &array[next], status);
                  }
                  else
                  {
                    /* convert the raw data before writing to FITS file */
                    ffi4fi4(&array[next], ntodo, scale, zero,
                            (INT32BIT *) buffer, status);
                    ffpi4b(fptr, ntodo, incre, (INT32BIT *) buffer, status);
                  }
    
                  break;
    
                case (TLONGLONG):
    
                    fflongfi8(&array[next], ntodo, scale, zero,
                            (LONGLONG *) buffer, status);
                    ffpi8b(fptr, ntodo, incre, (long *) buffer, status);
                    break;
    
                case (TBYTE):
     
                    ffi4fi1(&array[next], ntodo, scale, zero,
                            (unsigned char *) buffer, status);
                    ffpi1b(fptr, ntodo, incre, (unsigned char *) buffer, status);
                    break;
    
                case (TSHORT):
    
                    ffi4fi2(&array[next], ntodo, scale, zero,
                            (short *) buffer, status);
                    ffpi2b(fptr, ntodo, incre, (short *) buffer, status);
                    break;
    
                case (TFLOAT):
    
                    ffi4fr4(&array[next], ntodo, scale, zero,
                            (float *) buffer, status);
                    ffpr4b(fptr, ntodo, incre, (float *) buffer, status);
                    break;
    
                case (TDOUBLE):
                    ffi4fr8(&array[next], ntodo, scale, zero,
                           (double *) buffer, status);
                    ffpr8b(fptr, ntodo, incre, (double *) buffer, status);
                    break;
    
                case (TSTRING):  /* numerical column in an ASCII table */
    
                    if (cform[1] != 's')  /*  "%s" format is a string */
                    {
                      ffi4fstr(&array[next], ntodo, scale, zero, cform,
                              twidth, (char *) buffer, status);
    
                      if (incre == twidth)    /* contiguous bytes */
                         ffpbyt(fptr, ntodo * twidth, buffer, status);
                      else
                         ffpbytoff(fptr, twidth, ntodo, incre - twidth, buffer,
                                status);
    
                      break;
                    }
                    /* can't write to string column, so fall thru to default: */
    
                default:  /*  error trap  */
                    sprintf(message, 
                         "Cannot write numbers to column %d which has format %s",
                          colnum,tform);
                    ffpmsg(message);
                    if (hdutype == ASCII_TBL)
                        return(*status = BAD_ATABLE_FORMAT);
                    else
                        return(*status = BAD_BTABLE_FORMAT);
    
            } /* End of switch block */
    
            /*-------------------------*/
            /*  Check for fatal error  */
            /*-------------------------*/
            if (*status > 0)  /* test for error during previous write operation */
            {
              sprintf(message,
              "Error writing elements %.0f thru %.0f of input data array (ffpclj).",
                  (double) (next+1), (double) (next+ntodo));
              ffpmsg(message);
              return(*status);
            }
    
            /*--------------------------------------------*/
            /*  increment the counters for the next loop  */
            /*--------------------------------------------*/
            remain -= ntodo;
            if (remain)
            {
                next += ntodo;
                elemnum += ntodo;
                if (elemnum == repeat)  /* completed a row; start on next row */
                {
                    elemnum = 0;
                    rownum++;
                }
            }
        }  /*  End of main while Loop  */
    
    
        /*--------------------------------*/
        /*  check for numerical overflow  */
        /*--------------------------------*/
        if (*status == OVERFLOW_ERR)
        {
            ffpmsg(
            "Numerical overflow during type conversion while writing FITS data.");
            *status = NUM_OVERFLOW;
        }
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffpcnj( fitsfile *fptr,  /* I - FITS file pointer                       */
                int  colnum,     /* I - number of column to write (1 = 1st col) */
                LONGLONG  firstrow,  /* I - first row to write (1 = 1st row)        */
                LONGLONG  firstelem, /* I - first vector element to write (1 = 1st) */
                LONGLONG  nelem,     /* I - number of values to write               */
                long  *array,    /* I - array of values to write                */
                long   nulvalue, /* I - value used to flag undefined pixels     */
                int  *status)    /* IO - error status                           */
    /*
      Write an array of elements to the specified column of a table.  Any input
      pixels equal to the value of nulvalue will be replaced by the appropriate
      null value in the output FITS file. 
    
      The input array of values will be converted to the datatype of the column 
      and will be inverse-scaled by the FITS TSCALn and TZEROn values if necessary
    */
    {
        tcolumn *colptr;
        LONGLONG  ngood = 0, nbad = 0, ii;
        LONGLONG repeat, first, fstelm, fstrow;
        int tcode, overflow = 0;
     
        if (*status > 0)
            return(*status);
    
        /* reset position to the correct HDU if necessary */
        if (fptr->HDUposition != (fptr->Fptr)->curhdu)
        {
            ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status);
        }
        else if ((fptr->Fptr)->datastart == DATA_UNDEFINED)
        {
            if ( ffrdef(fptr, status) > 0)               /* rescan header */
                return(*status);
        }
    
        colptr  = (fptr->Fptr)->tableptr;   /* point to first column */
        colptr += (colnum - 1);     /* offset to correct column structure */
    
        tcode  = colptr->tdatatype;
    
        if (tcode > 0)
           repeat = colptr->trepeat;  /* repeat count for this column */
        else
           repeat = firstelem -1 + nelem;  /* variable length arrays */
    
        /* if variable length array, first write the whole input vector, 
           then go back and fill in the nulls */
        if (tcode < 0) {
          if (ffpclj(fptr, colnum, firstrow, firstelem, nelem, array, status) > 0) {
            if (*status == NUM_OVERFLOW) 
    	{
    	  /* ignore overflows, which are possibly the null pixel values */
    	  /*  overflow = 1;   */
    	  *status = 0;
    	} else { 
              return(*status);
    	}
          }
        }
    
        /* absolute element number in the column */
        first = (firstrow - 1) * repeat + firstelem;
    
        for (ii = 0; ii < nelem; ii++)
        {
          if (array[ii] != nulvalue)  /* is this a good pixel? */
          {
             if (nbad)  /* write previous string of bad pixels */
             {
                fstelm = ii - nbad + first;  /* absolute element number */
                fstrow = (fstelm - 1) / repeat + 1;  /* starting row number */
                fstelm = fstelm - (fstrow - 1) * repeat;  /* relative number */
    	  
                if (ffpclu(fptr, colnum, fstrow, fstelm, nbad, status) > 0)
                    return(*status);
    
                nbad=0;
             }
    
             ngood = ngood + 1;  /* the consecutive number of good pixels */
          }
          else
          {
             if (ngood)  /* write previous string of good pixels */
             {
                fstelm = ii - ngood + first;  /* absolute element number */
                fstrow = (fstelm - 1) / repeat + 1;  /* starting row number */
                fstelm = fstelm - (fstrow - 1) * repeat;  /* relative number */
    
                if (tcode > 0) {  /* variable length arrays have already been written */
                  if (ffpclj(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood],
                    status) > 0) {
    		if (*status == NUM_OVERFLOW) 
    		{
    		  overflow = 1;
    		  *status = 0;
    		} else { 
                      return(*status);
    		}
    	      }
    	    }
                ngood=0;
             }
    
             nbad = nbad +1;  /* the consecutive number of bad pixels */
          }
        }
    
        /* finished loop;  now just write the last set of pixels */
    
        if (ngood)  /* write last string of good pixels */
        {
          fstelm = ii - ngood + first;  /* absolute element number */
          fstrow = (fstelm - 1) / repeat + 1;  /* starting row number */
          fstelm = fstelm - (fstrow - 1) * repeat;  /* relative number */
    
          if (tcode > 0) {  /* variable length arrays have already been written */
            ffpclj(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status);
          }
        }
        else if (nbad) /* write last string of bad pixels */
        {
          fstelm = ii - nbad + first;  /* absolute element number */
          fstrow = (fstelm - 1) / repeat + 1;  /* starting row number */
          fstelm = fstelm - (fstrow - 1) * repeat;  /* relative number */
    
          ffpclu(fptr, colnum, fstrow, fstelm, nbad, status);
        }
    
        if (*status <= 0) {
          if (overflow) {
            *status = NUM_OVERFLOW;
          }
        }
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffi4fi1(long *input,           /* I - array of values to be converted  */
                long ntodo,            /* I - number of elements in the array  */
                double scale,          /* I - FITS TSCALn or BSCALE value      */
                double zero,           /* I - FITS TZEROn or BZERO  value      */
                unsigned char *output, /* O - output array of converted values */
                int *status)           /* IO - error status                    */
    /*
      Copy input to output prior to writing output to a FITS file.
      Do datatype conversion and scaling if required.
    */
    {
        long ii;
        double dvalue;
    
        if (scale == 1. && zero == 0.)
        {       
            for (ii = 0; ii < ntodo; ii++)
            {
                if (input[ii] < 0)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = 0;
                }
                else if (input[ii] > UCHAR_MAX)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = UCHAR_MAX;
                }
                else
                    output[ii] = (unsigned char) input[ii];
            }
        }
        else
        {
            for (ii = 0; ii < ntodo; ii++)
            {
                dvalue = (input[ii] - zero) / scale;
    
                if (dvalue < DUCHAR_MIN)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = 0;
                }
                else if (dvalue > DUCHAR_MAX)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = UCHAR_MAX;
                }
                else
                    output[ii] = (unsigned char) (dvalue + .5);
            }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffi4fi2(long *input,       /* I - array of values to be converted  */
                long ntodo,        /* I - number of elements in the array  */
                double scale,      /* I - FITS TSCALn or BSCALE value      */
                double zero,       /* I - FITS TZEROn or BZERO  value      */
                short *output,     /* O - output array of converted values */
                int *status)       /* IO - error status                    */
    /*
      Copy input to output prior to writing output to a FITS file.
      Do datatype conversion and scaling if required.
    */
    {
        long ii;
        double dvalue;
    
        if (scale == 1. && zero == 0.)
        {       
            for (ii = 0; ii < ntodo; ii++)
            {
                if (input[ii] < SHRT_MIN)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = SHRT_MIN;
                }
                else if (input[ii] > SHRT_MAX)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = SHRT_MAX;
                }
                else
                    output[ii] = (short) input[ii];
            }
        }
        else
        {
            for (ii = 0; ii < ntodo; ii++)
            {
                dvalue = (input[ii] - zero) / scale;
    
                if (dvalue < DSHRT_MIN)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = SHRT_MIN;
                }
                else if (dvalue > DSHRT_MAX)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = SHRT_MAX;
                }
                else
                {
                    if (dvalue >= 0)
                        output[ii] = (short) (dvalue + .5);
                    else
                        output[ii] = (short) (dvalue - .5);
                }
            }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffi4fi4(long *input,       /* I - array of values to be converted  */
                long ntodo,        /* I - number of elements in the array  */
                double scale,      /* I - FITS TSCALn or BSCALE value      */
                double zero,       /* I - FITS TZEROn or BZERO  value      */
                INT32BIT *output,  /* O - output array of converted values */
                int *status)       /* IO - error status                    */
    /*
      Copy input to output prior to writing output to a FITS file.
      Do datatype conversion and scaling if required
    */
    {
        long ii;
        double dvalue;
    
        if (scale == 1. && zero == 0.)
        {       
            for (ii = 0; ii < ntodo; ii++)
                    output[ii] = (INT32BIT) input[ii];
        }
        else
        {
            for (ii = 0; ii < ntodo; ii++)
            {
                dvalue = (input[ii] - zero) / scale;
    
                if (dvalue < DINT_MIN)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = INT32_MIN;
                }
                else if (dvalue > DINT_MAX)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = INT32_MAX;
                }
                else
                {
                    if (dvalue >= 0)
                        output[ii] = (INT32BIT) (dvalue + .5);
                    else
                        output[ii] = (INT32BIT) (dvalue - .5);
                }
            }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int fflongfi8(long *input,       /* I - array of values to be converted  */
                long ntodo,        /* I - number of elements in the array  */
                double scale,      /* I - FITS TSCALn or BSCALE value      */
                double zero,       /* I - FITS TZEROn or BZERO  value      */
                LONGLONG *output,      /* O - output array of converted values */
                int *status)       /* IO - error status                    */
    /*
      Copy input to output prior to writing output to a FITS file.
      Do datatype conversion and scaling if required
    */
    {
        long ii;
        double dvalue;
    
        if (scale == 1. && zero == 0.)
        {       
            for (ii = 0; ii < ntodo; ii++)
                    output[ii] = input[ii];
        }
        else
        {
            for (ii = 0; ii < ntodo; ii++)
            {
                dvalue = (input[ii] - zero) / scale;
    
                if (dvalue < DLONGLONG_MIN)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = LONGLONG_MIN;
                }
                else if (dvalue > DLONGLONG_MAX)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = LONGLONG_MAX;
                }
                else
                {
                    if (dvalue >= 0)
                        output[ii] = (LONGLONG) (dvalue + .5);
                    else
                        output[ii] = (LONGLONG) (dvalue - .5);
                }
            }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffi4fr4(long *input,       /* I - array of values to be converted  */
                long ntodo,        /* I - number of elements in the array  */
                double scale,      /* I - FITS TSCALn or BSCALE value      */
                double zero,       /* I - FITS TZEROn or BZERO  value      */
                float *output,     /* O - output array of converted values */
                int *status)       /* IO - error status                    */
    /*
      Copy input to output prior to writing output to a FITS file.
      Do datatype conversion and scaling if required.
    */
    {
        long ii;
    
        if (scale == 1. && zero == 0.)
        {       
            for (ii = 0; ii < ntodo; ii++)
                    output[ii] = (float) input[ii];
        }
        else
        {
            for (ii = 0; ii < ntodo; ii++)
                output[ii] = (float) ((input[ii] - zero) / scale);
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffi4fr8(long *input,       /* I - array of values to be converted  */
                long ntodo,        /* I - number of elements in the array  */
                double scale,      /* I - FITS TSCALn or BSCALE value      */
                double zero,       /* I - FITS TZEROn or BZERO  value      */
                double *output,    /* O - output array of converted values */
                int *status)       /* IO - error status                    */
    /*
      Copy input to output prior to writing output to a FITS file.
      Do datatype conversion and scaling if required.
    */
    {
        long ii;
    
        if (scale == 1. && zero == 0.)
        {       
            for (ii = 0; ii < ntodo; ii++)
                    output[ii] = (double) input[ii];
        }
        else
        {
            for (ii = 0; ii < ntodo; ii++)
                output[ii] = (input[ii] - zero) / scale;
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffi4fstr(long *input,      /* I - array of values to be converted  */
                long ntodo,        /* I - number of elements in the array  */
                double scale,      /* I - FITS TSCALn or BSCALE value      */
                double zero,       /* I - FITS TZEROn or BZERO  value      */
                char *cform,       /* I - format for output string values  */
                long twidth,       /* I - width of each field, in chars    */
                char *output,      /* O - output array of converted values */
                int *status)       /* IO - error status                    */
    /*
      Copy input to output prior to writing output to a FITS file.
      Do scaling if required.
    */
    {
        long ii;
        double dvalue;
        char *cptr;
    
        cptr = output;
        
        if (scale == 1. && zero == 0.)
        {       
            for (ii = 0; ii < ntodo; ii++)
            {
               sprintf(output, cform, (double) input[ii]);
               output += twidth;
    
               if (*output)  /* if this char != \0, then overflow occurred */
                  *status = OVERFLOW_ERR;
            }
        }
        else
        {
            for (ii = 0; ii < ntodo; ii++)
            {
              dvalue = (input[ii] - zero) / scale;
              sprintf(output, cform, dvalue);
              output += twidth;
    
              if (*output)  /* if this char != \0, then overflow occurred */
                *status = OVERFLOW_ERR;
            }
        }
    
        /* replace any commas with periods (e.g., in French locale) */
        while ((cptr = strchr(cptr, ','))) *cptr = '.';
    
        return(*status);
    }
    
    /* ======================================================================== */
    /*      the following routines support the 'long long' data type            */
    /* ======================================================================== */
    
    /*--------------------------------------------------------------------------*/
    int ffpprjj(fitsfile *fptr,  /* I - FITS file pointer                       */
                long  group,     /* I - group to write(1 = 1st group)           */
                LONGLONG  firstelem, /* I - first vector element to write(1 = 1st)  */
                LONGLONG  nelem,     /* I - number of values to write               */
                LONGLONG  *array, /* I - array of values that are written       */
                int  *status)    /* IO - error status                           */
    /*
      Write an array of values to the primary array. Data conversion
      and scaling will be performed if necessary (e.g, if the datatype of
      the FITS array is not the same as the array being written).
    */
    {
        long row;
    
        /*
          the primary array is represented as a binary table:
          each group of the primary array is a row in the table,
          where the first column contains the group parameters
          and the second column contains the image itself.
        */
    
        if (fits_is_compressed_image(fptr, status))
        {
            /* this is a compressed image in a binary table */
    
            ffpmsg("writing to compressed image is not supported");
    
            return(*status = DATA_COMPRESSION_ERR);
        }
    
        row=maxvalue(1,group);
    
        ffpcljj(fptr, 2, row, firstelem, nelem, array, status);
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffppnjj(fitsfile *fptr,  /* I - FITS file pointer                       */
                long  group,     /* I - group to write(1 = 1st group)           */
                LONGLONG  firstelem, /* I - first vector element to write(1 = 1st)  */
                LONGLONG  nelem,     /* I - number of values to write               */
                LONGLONG  *array, /* I - array of values that are written       */
                LONGLONG  nulval,    /* I - undefined pixel value                   */
                int  *status)    /* IO - error status                           */
    /*
      Write an array of values to the primary array. Data conversion
      and scaling will be performed if necessary (e.g, if the datatype of the
      FITS array is not the same as the array being written).  Any array values
      that are equal to the value of nulval will be replaced with the null
      pixel value that is appropriate for this column.
    */
    {
        long row;
    
        /*
          the primary array is represented as a binary table:
          each group of the primary array is a row in the table,
          where the first column contains the group parameters
          and the second column contains the image itself.
        */
    
        if (fits_is_compressed_image(fptr, status))
        {
            /* this is a compressed image in a binary table */
    
            ffpmsg("writing to compressed image is not supported");
    
            return(*status = DATA_COMPRESSION_ERR);
        }
    
        row=maxvalue(1,group);
    
        ffpcnjj(fptr, 2, row, firstelem, nelem, array, nulval, status);
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffp2djj(fitsfile *fptr,  /* I - FITS file pointer                     */
               long  group,      /* I - group to write(1 = 1st group)         */
               LONGLONG  ncols,      /* I - number of pixels in each row of array */
               LONGLONG  naxis1,     /* I - FITS image NAXIS1 value               */
               LONGLONG  naxis2,     /* I - FITS image NAXIS2 value               */
               LONGLONG  *array, /* I - array to be written                   */
               int  *status)     /* IO - error status                         */
    /*
      Write an entire 2-D array of values to the primary array. Data conversion
      and scaling will be performed if necessary (e.g, if the datatype of the
      FITS array is not the same as the array being written).
    */
    {
    
        /* call the 3D writing routine, with the 3rd dimension = 1 */
    
        ffp3djj(fptr, group, ncols, naxis2, naxis1, naxis2, 1, array, status);
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffp3djj(fitsfile *fptr,  /* I - FITS file pointer                     */
               long  group,      /* I - group to write(1 = 1st group)         */
               LONGLONG  ncols,      /* I - number of pixels in each row of array */
               LONGLONG  nrows,      /* I - number of rows in each plane of array */
               LONGLONG  naxis1,     /* I - FITS image NAXIS1 value               */
               LONGLONG  naxis2,     /* I - FITS image NAXIS2 value               */
               LONGLONG  naxis3,     /* I - FITS image NAXIS3 value               */
               LONGLONG  *array, /* I - array to be written                   */
               int  *status)     /* IO - error status                         */
    /*
      Write an entire 3-D cube of values to the primary array. Data conversion
      and scaling will be performed if necessary (e.g, if the datatype of the
      FITS array is not the same as the array being written).
    */
    {
        long tablerow, ii, jj;
        LONGLONG nfits, narray;
        /*
          the primary array is represented as a binary table:
          each group of the primary array is a row in the table,
          where the first column contains the group parameters
          and the second column contains the image itself.
        */
    
        if (fits_is_compressed_image(fptr, status))
        {
            /* this is a compressed image in a binary table */
    
            ffpmsg("writing to compressed image is not supported");
    
            return(*status = DATA_COMPRESSION_ERR);
        }
    
        tablerow=maxvalue(1,group);
    
        if (ncols == naxis1 && nrows == naxis2)  /* arrays have same size? */
        {
          /* all the image pixels are contiguous, so write all at once */
          ffpcljj(fptr, 2, tablerow, 1L, naxis1 * naxis2 * naxis3, array, status);
          return(*status);
        }
    
        if (ncols < naxis1 || nrows < naxis2)
           return(*status = BAD_DIMEN);
    
        nfits = 1;   /* next pixel in FITS image to write to */
        narray = 0;  /* next pixel in input array to be written */
    
        /* loop over naxis3 planes in the data cube */
        for (jj = 0; jj < naxis3; jj++)
        {
          /* loop over the naxis2 rows in the FITS image, */
          /* writing naxis1 pixels to each row            */
    
          for (ii = 0; ii < naxis2; ii++)
          {
           if (ffpcljj(fptr, 2, tablerow, nfits, naxis1,&array[narray],status) > 0)
             return(*status);
    
           nfits += naxis1;
           narray += ncols;
          }
          narray += (nrows - naxis2) * ncols;
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffpssjj(fitsfile *fptr,  /* I - FITS file pointer                       */
               long  group,      /* I - group to write(1 = 1st group)           */
               long  naxis,      /* I - number of data axes in array            */
               long  *naxes,     /* I - size of each FITS axis                  */
               long  *fpixel,    /* I - 1st pixel in each axis to write (1=1st) */
               long  *lpixel,    /* I - last pixel in each axis to write        */
               LONGLONG *array,  /* I - array to be written                     */
               int  *status)     /* IO - error status                           */
    /*
      Write a subsection of pixels to the primary array or image.
      A subsection is defined to be any contiguous rectangular
      array of pixels within the n-dimensional FITS data file.
      Data conversion and scaling will be performed if necessary 
      (e.g, if the datatype of the FITS array is not the same as
      the array being written).
    */
    {
        long tablerow;
        LONGLONG fpix[7], dimen[7], astart, pstart;
        LONGLONG off2, off3, off4, off5, off6, off7;
        LONGLONG st10, st20, st30, st40, st50, st60, st70;
        LONGLONG st1, st2, st3, st4, st5, st6, st7;
        long ii, i1, i2, i3, i4, i5, i6, i7, irange[7];
    
        if (*status > 0)
            return(*status);
    
        if (fits_is_compressed_image(fptr, status))
        {
            /* this is a compressed image in a binary table */
    
            ffpmsg("writing to compressed image is not supported");
    
    
            return(*status = DATA_COMPRESSION_ERR);
        }
    
        if (naxis < 1 || naxis > 7)
          return(*status = BAD_DIMEN);
    
        tablerow=maxvalue(1,group);
    
         /* calculate the size and number of loops to perform in each dimension */
        for (ii = 0; ii < 7; ii++)
        {
          fpix[ii]=1;
          irange[ii]=1;
          dimen[ii]=1;
        }
    
        for (ii = 0; ii < naxis; ii++)
        {    
          fpix[ii]=fpixel[ii];
          irange[ii]=lpixel[ii]-fpixel[ii]+1;
          dimen[ii]=naxes[ii];
        }
    
        i1=irange[0];
    
        /* compute the pixel offset between each dimension */
        off2 =     dimen[0];
        off3 = off2 * dimen[1];
        off4 = off3 * dimen[2];
        off5 = off4 * dimen[3];
        off6 = off5 * dimen[4];
        off7 = off6 * dimen[5];
    
        st10 = fpix[0];
        st20 = (fpix[1] - 1) * off2;
        st30 = (fpix[2] - 1) * off3;
        st40 = (fpix[3] - 1) * off4;
        st50 = (fpix[4] - 1) * off5;
        st60 = (fpix[5] - 1) * off6;
        st70 = (fpix[6] - 1) * off7;
    
        /* store the initial offset in each dimension */
        st1 = st10;
        st2 = st20;
        st3 = st30;
        st4 = st40;
        st5 = st50;
        st6 = st60;
        st7 = st70;
    
        astart = 0;
    
        for (i7 = 0; i7 < irange[6]; i7++)
        {
         for (i6 = 0; i6 < irange[5]; i6++)
         {
          for (i5 = 0; i5 < irange[4]; i5++)
          {
           for (i4 = 0; i4 < irange[3]; i4++)
           {
            for (i3 = 0; i3 < irange[2]; i3++)
            {
             pstart = st1 + st2 + st3 + st4 + st5 + st6 + st7;
    
             for (i2 = 0; i2 < irange[1]; i2++)
             {
               if (ffpcljj(fptr, 2, tablerow, pstart, i1, &array[astart],
                  status) > 0)
                  return(*status);
    
               astart += i1;
               pstart += off2;
             }
             st2 = st20;
             st3 = st3+off3;    
            }
            st3 = st30;
            st4 = st4+off4;
           }
           st4 = st40;
           st5 = st5+off5;
          }
          st5 = st50;
          st6 = st6+off6;
         }
         st6 = st60;
         st7 = st7+off7;
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffpgpjj(fitsfile *fptr,   /* I - FITS file pointer                      */
                long  group,      /* I - group to write(1 = 1st group)          */
                long  firstelem,  /* I - first vector element to write(1 = 1st) */
                long  nelem,      /* I - number of values to write              */
                LONGLONG  *array, /* I - array of values that are written       */
                int  *status)     /* IO - error status                          */
    /*
      Write an array of group parameters to the primary array. Data conversion
      and scaling will be performed if necessary (e.g, if the datatype of
      the FITS array is not the same as the array being written).
    */
    {
        long row;
    
        /*
          the primary array is represented as a binary table:
          each group of the primary array is a row in the table,
          where the first column contains the group parameters
          and the second column contains the image itself.
        */
    
        row=maxvalue(1,group);
    
        ffpcljj(fptr, 1L, row, firstelem, nelem, array, status);
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffpcljj(fitsfile *fptr,  /* I - FITS file pointer                       */
                int  colnum,     /* I - number of column to write (1 = 1st col) */
                LONGLONG  firstrow,  /* I - first row to write (1 = 1st row)        */
                LONGLONG  firstelem, /* I - first vector element to write (1 = 1st) */
                LONGLONG  nelem,     /* I - number of values to write               */
                LONGLONG  *array, /* I - array of values to write               */
                int  *status)    /* IO - error status                           */
    /*
      Write an array of values to a column in the current FITS HDU.
      The column number may refer to a real column in an ASCII or binary table, 
      or it may refer to a virtual column in a 1 or more grouped FITS primary
      array.  FITSIO treats a primary array as a binary table
      with 2 vector columns: the first column contains the group parameters (often
      with length = 0) and the second column contains the array of image pixels.
      Each row of the table represents a group in the case of multigroup FITS
      images.
    
      The input array of values will be converted to the datatype of the column 
      and will be inverse-scaled by the FITS TSCALn and TZEROn values if necessary.
    */
    {
        int tcode, maxelem2, hdutype, writeraw;
        long twidth, incre;
        long  ntodo;
        LONGLONG repeat, startpos, elemnum, wrtptr, rowlen, rownum, remain, next, tnull, maxelem;
        double scale, zero;
        char tform[20], cform[20];
        char message[FLEN_ERRMSG];
    
        char snull[20];   /*  the FITS null value  */
    
        double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */
        void *buffer;
    
        if (*status > 0)           /* inherit input status value if > 0 */
            return(*status);
    
        buffer = cbuff;
    
        /*---------------------------------------------------*/
        /*  Check input and get parameters about the column: */
        /*---------------------------------------------------*/
        if (ffgcprll( fptr, colnum, firstrow, firstelem, nelem, 1, &scale, &zero,
            tform, &twidth, &tcode, &maxelem2, &startpos,  &elemnum, &incre,
            &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0)
            return(*status);
        maxelem = maxelem2;
    
        if (tcode == TSTRING)   
             ffcfmt(tform, cform);     /* derive C format for writing strings */
    
        /*
           if there is no scaling and the native machine format is not byteswapped
           then we can simply write the raw data bytes into the FITS file if the
           datatype of the FITS column is the same as the input values.  Otherwise
           we must convert the raw values into the scaled and/or machine dependent
           format in a temporary buffer that has been allocated for this purpose.
        */
        if (scale == 1. && zero == 0. && 
           MACHINE == NATIVE && tcode == TLONGLONG)
        {
            writeraw = 1;
            if (nelem < (LONGLONG)INT32_MAX/8) {
                maxelem = nelem;
            } else {
                maxelem = INT32_MAX/8;
            }
        }
        else
            writeraw = 0;
    
        /*---------------------------------------------------------------------*/
        /*  Now write the pixels to the FITS column.                           */
        /*  First call the ffXXfYY routine to  (1) convert the datatype        */
        /*  if necessary, and (2) scale the values by the FITS TSCALn and      */
        /*  TZEROn linear scaling parameters into a temporary buffer.          */
        /*---------------------------------------------------------------------*/
        remain = nelem;           /* remaining number of values to write  */
        next = 0;                 /* next element in array to be written  */
        rownum = 0;               /* row number, relative to firstrow     */
    
        while (remain)
        {
            /* limit the number of pixels to process a one time to the number that
               will fit in the buffer space or to the number of pixels that remain
               in the current vector, which ever is smaller.
            */
            ntodo = (long) minvalue(remain, maxelem);      
            ntodo = (long) minvalue(ntodo, (repeat - elemnum));
    
            wrtptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * incre);
    
            ffmbyt(fptr, wrtptr, IGNORE_EOF, status); /* move to write position */
    
            switch (tcode) 
            {
                case (TLONGLONG):
                  if (writeraw)
                  {
                    /* write raw input bytes without conversion */
                    ffpi8b(fptr, ntodo, incre, (long *) &array[next], status);
                  }
                  else
                  {
                    /* convert the raw data before writing to FITS file */
                    ffi8fi8(&array[next], ntodo, scale, zero,
                            (LONGLONG *) buffer, status);
                    ffpi8b(fptr, ntodo, incre, (long *) buffer, status);
                  }
    
                  break;
    
                case (TLONG):
    
                    ffi8fi4(&array[next], ntodo, scale, zero,
                            (INT32BIT *) buffer, status);
                    ffpi4b(fptr, ntodo, incre, (INT32BIT *) buffer, status);
                    break;
    
                case (TBYTE):
     
                    ffi8fi1(&array[next], ntodo, scale, zero,
                            (unsigned char *) buffer, status);
                    ffpi1b(fptr, ntodo, incre, (unsigned char *) buffer, status);
                    break;
    
                case (TSHORT):
    
                    ffi8fi2(&array[next], ntodo, scale, zero,
                            (short *) buffer, status);
                    ffpi2b(fptr, ntodo, incre, (short *) buffer, status);
                    break;
    
                case (TFLOAT):
    
                    ffi8fr4(&array[next], ntodo, scale, zero,
                            (float *) buffer, status);
                    ffpr4b(fptr, ntodo, incre, (float *) buffer, status);
                    break;
    
                case (TDOUBLE):
                    ffi8fr8(&array[next], ntodo, scale, zero,
                           (double *) buffer, status);
                    ffpr8b(fptr, ntodo, incre, (double *) buffer, status);
                    break;
    
                case (TSTRING):  /* numerical column in an ASCII table */
    
                    if (cform[1] != 's')  /*  "%s" format is a string */
                    {
                      ffi8fstr(&array[next], ntodo, scale, zero, cform,
                              twidth, (char *) buffer, status);
    
                      if (incre == twidth)    /* contiguous bytes */
                         ffpbyt(fptr, ntodo * twidth, buffer, status);
                      else
                         ffpbytoff(fptr, twidth, ntodo, incre - twidth, buffer,
                                status);
    
                      break;
                    }
                    /* can't write to string column, so fall thru to default: */
    
                default:  /*  error trap  */
                    sprintf(message, 
                         "Cannot write numbers to column %d which has format %s",
                          colnum,tform);
                    ffpmsg(message);
                    if (hdutype == ASCII_TBL)
                        return(*status = BAD_ATABLE_FORMAT);
                    else
                        return(*status = BAD_BTABLE_FORMAT);
    
            } /* End of switch block */
    
            /*-------------------------*/
            /*  Check for fatal error  */
            /*-------------------------*/
            if (*status > 0)  /* test for error during previous write operation */
            {
              sprintf(message,
              "Error writing elements %.0f thru %.0f of input data array (ffpclj).",
                  (double) (next+1), (double) (next+ntodo));
              ffpmsg(message);
              return(*status);
            }
    
            /*--------------------------------------------*/
            /*  increment the counters for the next loop  */
            /*--------------------------------------------*/
            remain -= ntodo;
            if (remain)
            {
                next += ntodo;
                elemnum += ntodo;
                if (elemnum == repeat)  /* completed a row; start on next row */
                {
                    elemnum = 0;
                    rownum++;
                }
            }
        }  /*  End of main while Loop  */
    
    
        /*--------------------------------*/
        /*  check for numerical overflow  */
        /*--------------------------------*/
        if (*status == OVERFLOW_ERR)
        {
            ffpmsg(
            "Numerical overflow during type conversion while writing FITS data.");
            *status = NUM_OVERFLOW;
        }
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffpcnjj(fitsfile *fptr,  /* I - FITS file pointer                       */
                int  colnum,     /* I - number of column to write (1 = 1st col) */
                LONGLONG  firstrow,  /* I - first row to write (1 = 1st row)        */
                LONGLONG  firstelem, /* I - first vector element to write (1 = 1st) */
                LONGLONG  nelem,     /* I - number of values to write               */
                LONGLONG *array, /* I - array of values to write                */
                LONGLONG nulvalue, /* I - value used to flag undefined pixels   */
                int  *status)    /* IO - error status                           */
    /*
      Write an array of elements to the specified column of a table.  Any input
      pixels equal to the value of nulvalue will be replaced by the appropriate
      null value in the output FITS file. 
    
      The input array of values will be converted to the datatype of the column 
      and will be inverse-scaled by the FITS TSCALn and TZEROn values if necessary
    */
    {
        tcolumn *colptr;
        LONGLONG  ngood = 0, nbad = 0, ii;
        LONGLONG repeat, first, fstelm, fstrow;
        int tcode, overflow = 0;
    
        if (*status > 0)
            return(*status);
    
        /* reset position to the correct HDU if necessary */
        if (fptr->HDUposition != (fptr->Fptr)->curhdu)
        {
            ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status);
        }
        else if ((fptr->Fptr)->datastart == DATA_UNDEFINED)
        {
            if ( ffrdef(fptr, status) > 0)               /* rescan header */
                return(*status);
        }
    
        colptr  = (fptr->Fptr)->tableptr;   /* point to first column */
        colptr += (colnum - 1);     /* offset to correct column structure */
    
        tcode  = colptr->tdatatype;
    
        if (tcode > 0)
           repeat = colptr->trepeat;  /* repeat count for this column */
        else
           repeat = firstelem -1 + nelem;  /* variable length arrays */
    
        /* if variable length array, first write the whole input vector, 
           then go back and fill in the nulls */
        if (tcode < 0) {
          if (ffpcljj(fptr, colnum, firstrow, firstelem, nelem, array, status) > 0) {
            if (*status == NUM_OVERFLOW) 
    	{
    	  /* ignore overflows, which are possibly the null pixel values */
    	  /*  overflow = 1;   */
    	  *status = 0;
    	} else { 
              return(*status);
    	}
          }
        }
    
        /* absolute element number in the column */
        first = (firstrow - 1) * repeat + firstelem;
    
        for (ii = 0; ii < nelem; ii++)
        {
          if (array[ii] != nulvalue)  /* is this a good pixel? */
          {
             if (nbad)  /* write previous string of bad pixels */
             {
                fstelm = ii - nbad + first;  /* absolute element number */
                fstrow = (fstelm - 1) / repeat + 1;  /* starting row number */
                fstelm = fstelm - (fstrow - 1) * repeat;  /* relative number */
    
                if (ffpclu(fptr, colnum, fstrow, fstelm, nbad, status) > 0)
                    return(*status);
    
                nbad=0;
             }
    
             ngood = ngood +1;  /* the consecutive number of good pixels */
          }
          else
          {
             if (ngood)  /* write previous string of good pixels */
             {
                fstelm = ii - ngood + first;  /* absolute element number */
                fstrow = (fstelm - 1) / repeat + 1;  /* starting row number */
                fstelm = fstelm - (fstrow - 1) * repeat;  /* relative number */
    
                if (tcode > 0) {  /* variable length arrays have already been written */
                  if (ffpcljj(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood],
                    status) > 0) {
    		if (*status == NUM_OVERFLOW) 
    		{
    		  overflow = 1;
    		  *status = 0;
    		} else { 
                      return(*status);
    		}
    	      }
    	    }
                ngood=0;
             }
    
             nbad = nbad +1;  /* the consecutive number of bad pixels */
          }
        }
    
        /* finished loop;  now just write the last set of pixels */
    
        if (ngood)  /* write last string of good pixels */
        {
          fstelm = ii - ngood + first;  /* absolute element number */
          fstrow = (fstelm - 1) / repeat + 1;  /* starting row number */
          fstelm = fstelm - (fstrow - 1) * repeat;  /* relative number */
    
          if (tcode > 0) {  /* variable length arrays have already been written */
            ffpcljj(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status);
          }
        }
        else if (nbad) /* write last string of bad pixels */
        {
          fstelm = ii - nbad + first;  /* absolute element number */
          fstrow = (fstelm - 1) / repeat + 1;  /* starting row number */
          fstelm = fstelm - (fstrow - 1) * repeat;  /* relative number */
    
          ffpclu(fptr, colnum, fstrow, fstelm, nbad, status);
        }
    
        if (*status <= 0) {
          if (overflow) {
            *status = NUM_OVERFLOW;
          }
        }
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffi8fi1(LONGLONG *input,       /* I - array of values to be converted  */
                long ntodo,            /* I - number of elements in the array  */
                double scale,          /* I - FITS TSCALn or BSCALE value      */
                double zero,           /* I - FITS TZEROn or BZERO  value      */
                unsigned char *output, /* O - output array of converted values */
                int *status)           /* IO - error status                    */
    /*
      Copy input to output prior to writing output to a FITS file.
      Do datatype conversion and scaling if required.
    */
    {
        long ii;
        double dvalue;
    
        if (scale == 1. && zero == 0.)
        {       
            for (ii = 0; ii < ntodo; ii++)
            {
                if (input[ii] < 0)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = 0;
                }
                else if (input[ii] > UCHAR_MAX)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = UCHAR_MAX;
                }
                else
                    output[ii] = (unsigned char) input[ii];
            }
        }
        else
        {
            for (ii = 0; ii < ntodo; ii++)
            {
                dvalue = (input[ii] - zero) / scale;
    
                if (dvalue < DUCHAR_MIN)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = 0;
                }
                else if (dvalue > DUCHAR_MAX)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = UCHAR_MAX;
                }
                else
                    output[ii] = (unsigned char) (dvalue + .5);
            }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffi8fi2(LONGLONG *input,   /* I - array of values to be converted  */
                long ntodo,        /* I - number of elements in the array  */
                double scale,      /* I - FITS TSCALn or BSCALE value      */
                double zero,       /* I - FITS TZEROn or BZERO  value      */
                short *output,     /* O - output array of converted values */
                int *status)       /* IO - error status                    */
    /*
      Copy input to output prior to writing output to a FITS file.
      Do datatype conversion and scaling if required.
    */
    {
        long ii;
        double dvalue;
    
        if (scale == 1. && zero == 0.)
        {       
            for (ii = 0; ii < ntodo; ii++)
            {
                if (input[ii] < SHRT_MIN)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = SHRT_MIN;
                }
                else if (input[ii] > SHRT_MAX)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = SHRT_MAX;
                }
                else
                    output[ii] = (short) input[ii];
            }
        }
        else
        {
            for (ii = 0; ii < ntodo; ii++)
            {
                dvalue = (input[ii] - zero) / scale;
    
                if (dvalue < DSHRT_MIN)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = SHRT_MIN;
                }
                else if (dvalue > DSHRT_MAX)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = SHRT_MAX;
                }
                else
                {
                    if (dvalue >= 0)
                        output[ii] = (short) (dvalue + .5);
                    else
                        output[ii] = (short) (dvalue - .5);
                }
            }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffi8fi4(LONGLONG *input,   /* I - array of values to be converted  */
                long ntodo,        /* I - number of elements in the array  */
                double scale,      /* I - FITS TSCALn or BSCALE value      */
                double zero,       /* I - FITS TZEROn or BZERO  value      */
                INT32BIT *output,  /* O - output array of converted values */
                int *status)       /* IO - error status                    */
    /*
      Copy input to output prior to writing output to a FITS file.
      Do datatype conversion and scaling if required
    */
    {
        long ii;
        double dvalue;
    
        if (scale == 1. && zero == 0.)
        {       
            for (ii = 0; ii < ntodo; ii++)
            {
                if (input[ii] < INT32_MIN)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = INT32_MIN;
                }
                else if (input[ii] > INT32_MAX)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = INT32_MAX;
                }
                else
                    output[ii] = (INT32BIT) input[ii];
            }
        }
        else
        {
            for (ii = 0; ii < ntodo; ii++)
            {
                dvalue = (input[ii] - zero) / scale;
    
                if (dvalue < DINT_MIN)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = INT32_MIN;
                }
                else if (dvalue > DINT_MAX)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = INT32_MAX;
                }
                else
                {
                    if (dvalue >= 0)
                        output[ii] = (INT32BIT) (dvalue + .5);
                    else
                        output[ii] = (INT32BIT) (dvalue - .5);
                }
            }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffi8fi8(LONGLONG *input,   /* I - array of values to be converted  */
                long ntodo,        /* I - number of elements in the array  */
                double scale,      /* I - FITS TSCALn or BSCALE value      */
                double zero,       /* I - FITS TZEROn or BZERO  value      */
                LONGLONG *output,  /* O - output array of converted values */
                int *status)       /* IO - error status                    */
    /*
      Copy input to output prior to writing output to a FITS file.
      Do datatype conversion and scaling if required
    */
    {
        long ii;
        double dvalue;
    
        if (scale == 1. && zero == 0.)
        {       
            for (ii = 0; ii < ntodo; ii++)
                    output[ii] = input[ii];
        }
        else
        {
            for (ii = 0; ii < ntodo; ii++)
            {
                dvalue = (input[ii] - zero) / scale;
    
                if (dvalue < DLONGLONG_MIN)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = LONGLONG_MIN;
                }
                else if (dvalue > DLONGLONG_MAX)
                {
                    *status = OVERFLOW_ERR;
                    output[ii] = LONGLONG_MAX;
                }
                else
                {
                    if (dvalue >= 0)
                        output[ii] = (LONGLONG) (dvalue + .5);
                    else
                        output[ii] = (LONGLONG) (dvalue - .5);
                }
            }
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffi8fr4(LONGLONG *input,   /* I - array of values to be converted  */
                long ntodo,        /* I - number of elements in the array  */
                double scale,      /* I - FITS TSCALn or BSCALE value      */
                double zero,       /* I - FITS TZEROn or BZERO  value      */
                float *output,     /* O - output array of converted values */
                int *status)       /* IO - error status                    */
    /*
      Copy input to output prior to writing output to a FITS file.
      Do datatype conversion and scaling if required.
    */
    {
        long ii;
    
        if (scale == 1. && zero == 0.)
        {       
            for (ii = 0; ii < ntodo; ii++)
                    output[ii] = (float) input[ii];
        }
        else
        {
            for (ii = 0; ii < ntodo; ii++)
                output[ii] = (float) ((input[ii] - zero) / scale);
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffi8fr8(LONGLONG *input,       /* I - array of values to be converted  */
                long ntodo,        /* I - number of elements in the array  */
                double scale,      /* I - FITS TSCALn or BSCALE value      */
                double zero,       /* I - FITS TZEROn or BZERO  value      */
                double *output,    /* O - output array of converted values */
                int *status)       /* IO - error status                    */
    /*
      Copy input to output prior to writing output to a FITS file.
      Do datatype conversion and scaling if required.
    */
    {
        long ii;
    
        if (scale == 1. && zero == 0.)
        {       
            for (ii = 0; ii < ntodo; ii++)
                    output[ii] = (double) input[ii];
        }
        else
        {
            for (ii = 0; ii < ntodo; ii++)
                output[ii] = (input[ii] - zero) / scale;
        }
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffi8fstr(LONGLONG *input,  /* I - array of values to be converted  */
                long ntodo,        /* I - number of elements in the array  */
                double scale,      /* I - FITS TSCALn or BSCALE value      */
                double zero,       /* I - FITS TZEROn or BZERO  value      */
                char *cform,       /* I - format for output string values  */
                long twidth,       /* I - width of each field, in chars    */
                char *output,      /* O - output array of converted values */
                int *status)       /* IO - error status                    */
    /*
      Copy input to output prior to writing output to a FITS file.
      Do scaling if required.
    */
    {
        long ii;
        double dvalue;
        char *cptr;
        
        cptr = output;
    
        if (scale == 1. && zero == 0.)
        {       
            for (ii = 0; ii < ntodo; ii++)
            {
               sprintf(output, cform, (double) input[ii]);
               output += twidth;
    
               if (*output)  /* if this char != \0, then overflow occurred */
                  *status = OVERFLOW_ERR;
            }
        }
        else
        {
            for (ii = 0; ii < ntodo; ii++)
            {
              dvalue = (input[ii] - zero) / scale;
              sprintf(output, cform, dvalue);
              output += twidth;
    
              if (*output)  /* if this char != \0, then overflow occurred */
                *status = OVERFLOW_ERR;
            }
        }
    
        /* replace any commas with periods (e.g., in French locale) */
        while ((cptr = strchr(cptr, ','))) *cptr = '.';
        
        return(*status);
    }
    healpy-1.8.1/cfitsio/eval_defs.h0000654000175000017530000001023612272000775017160 0ustar  zoncaplanck00000000000000#include 
    #include 
    #include 
    #include 
    #if defined(__sgi) || defined(__hpux)
    #include 
    #endif
    #ifdef sparc
    #include 
    #endif
    #include "fitsio2.h"
    
    #define MAXDIMS       5
    #define MAXSUBS      10
    #define MAXVARNAME   80
    #define CONST_OP  -1000
    #define pERROR       -1
    #define MAX_STRLEN  256
    #define MAX_STRLEN_S "255"
    
    #ifndef FFBISON
    #include "eval_tab.h"
    #endif
    
    
    typedef struct {
                      char   name[MAXVARNAME+1];
                      int    type;
                      long   nelem;
                      int    naxis;
                      long   naxes[MAXDIMS];
                      char   *undef;
                      void   *data;
                                    } DataInfo;
    
    typedef struct {
                      long   nelem;
                      int    naxis;
                      long   naxes[MAXDIMS];
                      char   *undef;
                      union {
                             double dbl;
                             long   lng;
                             char   log;
                             char   str[MAX_STRLEN];
                             double *dblptr;
                             long   *lngptr;
                             char   *logptr;
                             char   **strptr;
                             void   *ptr;
    		  } data;
                                    } lval;
    
    typedef struct Node {
                      int    operation;
                      void   (*DoOp)(struct Node *this);
                      int    nSubNodes;
                      int    SubNodes[MAXSUBS];
                      int    type;
                      lval   value;
                                    } Node;
    
    typedef struct {
                      fitsfile    *def_fptr;
                      int         (*getData)( char *dataName, void *dataValue );
                      int         (*loadData)( int varNum, long fRow, long nRows,
    					   void *data, char *undef );
    
                      int         compressed;
                      int         timeCol;
                      int         parCol;
                      int         valCol;
    
                      char        *expr;
                      int         index;
                      int         is_eobuf;
    
                      Node        *Nodes;
                      int         nNodes;
                      int         nNodesAlloc;
                      int         resultNode;
                      
                      long        firstRow;
                      long        nRows;
    
                      int         nCols;
                      iteratorCol *colData;
                      DataInfo    *varData;
                      PixelFilter *pixFilter;
    
                      long        firstDataRow;
                      long        nDataRows;
                      long        totalRows;
    
                      int         datatype;
                      int         hdutype;
    
                      int         status;
                                    } ParseData;
    
    typedef enum {
                      rnd_fct = 1001,
                      sum_fct,
                      nelem_fct,
                      sin_fct,
                      cos_fct,
                      tan_fct,
                      asin_fct,
                      acos_fct,
                      atan_fct,
                      sinh_fct,
                      cosh_fct,
                      tanh_fct,
                      exp_fct,
                      log_fct,
                      log10_fct,
                      sqrt_fct,
                      abs_fct,
                      atan2_fct,
                      ceil_fct,
                      floor_fct,
                      round_fct,
    		  min1_fct,
    		  min2_fct,
    		  max1_fct,
    		  max2_fct,
                      near_fct,
                      circle_fct,
                      box_fct,
                      elps_fct,
                      isnull_fct,
                      defnull_fct,
                      gtifilt_fct,
                      regfilt_fct,
                      ifthenelse_fct,
                      row_fct,
                      null_fct,
    		  median_fct,
    		  average_fct,
    		  stddev_fct,
    		  nonnull_fct,
    		  angsep_fct,
    		  gasrnd_fct,
    		  poirnd_fct,
    		  strmid_fct,
    		  strpos_fct
                                    } funcOp;
    
    extern ParseData gParse;
    
    #ifdef __cplusplus
    extern "C" {
    #endif
    
       int  ffparse(void);
       int  fflex(void);
       void ffrestart(FILE*);
    
       void Evaluate_Parser( long firstRow, long nRows );
    
    #ifdef __cplusplus
        }
    #endif
    healpy-1.8.1/cfitsio/install-sh0000755000175000017530000001272112272000775017063 0ustar  zoncaplanck00000000000000#! /bin/sh
    #
    # install - install a program, script, or datafile
    # This comes from X11R5 (mit/util/scripts/install.sh).
    #
    # Copyright 1991 by the Massachusetts Institute of Technology
    #
    # Permission to use, copy, modify, distribute, and sell this software and its
    # documentation for any purpose is hereby granted without fee, provided that
    # the above copyright notice appear in all copies and that both that
    # copyright notice and this permission notice appear in supporting
    # documentation, and that the name of M.I.T. not be used in advertising or
    # publicity pertaining to distribution of the software without specific,
    # written prior permission.  M.I.T. makes no representations about the
    # suitability of this software for any purpose.  It is provided "as is"
    # without express or implied warranty.
    #
    # Calling this script install-sh is preferred over install.sh, to prevent
    # `make' implicit rules from creating a file called install from it
    # when there is no Makefile.
    #
    # This script is compatible with the BSD install script, but was written
    # from scratch.  It can only install one file at a time, a restriction
    # shared with many OS's install programs.
    
    
    # set DOITPROG to echo to test this script
    
    # Don't use :- since 4.3BSD and earlier shells don't like it.
    doit="${DOITPROG-}"
    
    
    # put in absolute paths if you don't have them in your path; or use env. vars.
    
    mvprog="${MVPROG-mv}"
    cpprog="${CPPROG-cp}"
    chmodprog="${CHMODPROG-chmod}"
    chownprog="${CHOWNPROG-chown}"
    chgrpprog="${CHGRPPROG-chgrp}"
    stripprog="${STRIPPROG-strip}"
    rmprog="${RMPROG-rm}"
    mkdirprog="${MKDIRPROG-mkdir}"
    
    transformbasename=""
    transform_arg=""
    instcmd="$mvprog"
    chmodcmd="$chmodprog 0755"
    chowncmd=""
    chgrpcmd=""
    stripcmd=""
    rmcmd="$rmprog -f"
    mvcmd="$mvprog"
    src=""
    dst=""
    dir_arg=""
    
    while [ x"$1" != x ]; do
        case $1 in
    	-c) instcmd="$cpprog"
    	    shift
    	    continue;;
    
    	-d) dir_arg=true
    	    shift
    	    continue;;
    
    	-m) chmodcmd="$chmodprog $2"
    	    shift
    	    shift
    	    continue;;
    
    	-o) chowncmd="$chownprog $2"
    	    shift
    	    shift
    	    continue;;
    
    	-g) chgrpcmd="$chgrpprog $2"
    	    shift
    	    shift
    	    continue;;
    
    	-s) stripcmd="$stripprog"
    	    shift
    	    continue;;
    
    	-t=*) transformarg=`echo $1 | sed 's/-t=//'`
    	    shift
    	    continue;;
    
    	-b=*) transformbasename=`echo $1 | sed 's/-b=//'`
    	    shift
    	    continue;;
    
    	*)  if [ x"$src" = x ]
    	    then
    		src=$1
    	    else
    		# this colon is to work around a 386BSD /bin/sh bug
    		:
    		dst=$1
    	    fi
    	    shift
    	    continue;;
        esac
    done
    
    if [ x"$src" = x ]
    then
    	echo "install:	no input file specified"
    	exit 1
    else
    	true
    fi
    
    if [ x"$dir_arg" != x ]; then
    	dst=$src
    	src=""
    	
    	if [ -d $dst ]; then
    		instcmd=:
    	else
    		instcmd=mkdir
    	fi
    else
    
    # Waiting for this to be detected by the "$instcmd $src $dsttmp" command
    # might cause directories to be created, which would be especially bad 
    # if $src (and thus $dsttmp) contains '*'.
    
    	if [ -f $src -o -d $src ]
    	then
    		true
    	else
    		echo "install:  $src does not exist"
    		exit 1
    	fi
    	
    	if [ x"$dst" = x ]
    	then
    		echo "install:	no destination specified"
    		exit 1
    	else
    		true
    	fi
    
    # If destination is a directory, append the input filename; if your system
    # does not like double slashes in filenames, you may need to add some logic
    
    	if [ -d $dst ]
    	then
    		dst="$dst"/`basename $src`
    	else
    		true
    	fi
    fi
    
    ## this sed command emulates the dirname command
    dstdir=`echo $dst | sed -e 's,[^/]*$,,;s,/$,,;s,^$,.,'`
    
    # Make sure that the destination directory exists.
    #  this part is taken from Noah Friedman's mkinstalldirs script
    
    # Skip lots of stat calls in the usual case.
    if [ ! -d "$dstdir" ]; then
    defaultIFS='	
    '
    IFS="${IFS-${defaultIFS}}"
    
    oIFS="${IFS}"
    # Some sh's can't handle IFS=/ for some reason.
    IFS='%'
    set - `echo ${dstdir} | sed -e 's@/@%@g' -e 's@^%@/@'`
    IFS="${oIFS}"
    
    pathcomp=''
    
    while [ $# -ne 0 ] ; do
    	pathcomp="${pathcomp}${1}"
    	shift
    
    	if [ ! -d "${pathcomp}" ] ;
            then
    		$mkdirprog "${pathcomp}"
    	else
    		true
    	fi
    
    	pathcomp="${pathcomp}/"
    done
    fi
    
    if [ x"$dir_arg" != x ]
    then
    	$doit $instcmd $dst &&
    
    	if [ x"$chowncmd" != x ]; then $doit $chowncmd $dst; else true ; fi &&
    	if [ x"$chgrpcmd" != x ]; then $doit $chgrpcmd $dst; else true ; fi &&
    	if [ x"$stripcmd" != x ]; then $doit $stripcmd $dst; else true ; fi &&
    	if [ x"$chmodcmd" != x ]; then $doit $chmodcmd $dst; else true ; fi
    else
    
    # If we're going to rename the final executable, determine the name now.
    
    	if [ x"$transformarg" = x ] 
    	then
    		dstfile=`basename $dst`
    	else
    		dstfile=`basename $dst $transformbasename | 
    			sed $transformarg`$transformbasename
    	fi
    
    # don't allow the sed command to completely eliminate the filename
    
    	if [ x"$dstfile" = x ] 
    	then
    		dstfile=`basename $dst`
    	else
    		true
    	fi
    
    # Make a temp file name in the proper directory.
    
    	dsttmp=$dstdir/#inst.$$#
    
    # Move or copy the file name to the temp name
    
    	$doit $instcmd $src $dsttmp &&
    
    	trap "rm -f ${dsttmp}" 0 &&
    
    # and set any options; do chmod last to preserve setuid bits
    
    # If any of these fail, we abort the whole thing.  If we want to
    # ignore errors from any of these, just make sure not to ignore
    # errors from the above "$doit $instcmd $src $dsttmp" command.
    
    	if [ x"$chowncmd" != x ]; then $doit $chowncmd $dsttmp; else true;fi &&
    	if [ x"$chgrpcmd" != x ]; then $doit $chgrpcmd $dsttmp; else true;fi &&
    	if [ x"$stripcmd" != x ]; then $doit $stripcmd $dsttmp; else true;fi &&
    	if [ x"$chmodcmd" != x ]; then $doit $chmodcmd $dsttmp; else true;fi &&
    
    # Now rename the file to the real destination.
    
    	$doit $rmcmd -f $dstdir/$dstfile &&
    	$doit $mvcmd $dsttmp $dstdir/$dstfile 
    
    fi &&
    
    
    exit 0
    healpy-1.8.1/cfitsio/drvrgsiftp.c0000654000175000017530000003241612272000775017421 0ustar  zoncaplanck00000000000000
    /*  This file, drvrgsiftp.c contains driver routines for gsiftp files. */
    /*  Andrea Barisani                                  */
    /* Taffoni Giuliano                              */
    #ifdef HAVE_NET_SERVICES
    #ifdef HAVE_GSIFTP
    
    #include 
    #include 
    #include 
    #include 
    #include 
    #include "fitsio2.h"
    
    #include 
    
    #define MAXLEN 1200
    #define NETTIMEOUT 80
    #define MAX_BUFFER_SIZE_R 1024
    #define MAX_BUFFER_SIZE_W (64*1024)
    
    static int gsiftpopen = 0;
    static int global_offset = 0;
    static int gsiftp_get(char *filename, FILE **gsiftpfile, int num_streams);
    
    static globus_mutex_t lock;
    static globus_cond_t cond;
    static globus_bool_t done;
    
    static char *gsiftp_tmpfile;
    static char *gsiftpurl = NULL;
    static char gsiftp_tmpdir[MAXLEN];
    
    static jmp_buf env; /* holds the jump buffer for setjmp/longjmp pairs */
    static void signal_handler(int sig);
    
    int gsiftp_init(void)
    {
    
      if (getenv("GSIFTP_TMPFILE")) {
        gsiftp_tmpfile = getenv("GSIFTP_TMPFILE");
      } else {
        strncpy(gsiftp_tmpdir, "/tmp/gsiftp_XXXXXX", sizeof gsiftp_tmpdir);
        if (mkdtemp(gsiftp_tmpdir) == NULL) {
            ffpmsg("Cannot create temporary directory!");
            return (FILE_NOT_OPENED);
        }
        gsiftp_tmpfile = malloc(strlen(gsiftp_tmpdir) + strlen("/gsiftp_buffer.tmp"));
        strcat(gsiftp_tmpfile, gsiftp_tmpdir);
        strcat(gsiftp_tmpfile, "/gsiftp_buffer.tmp");
      }
    
      return file_init();
    }
    
    int gsiftp_shutdown(void)
    {
      free(gsiftpurl);
      free(gsiftp_tmpfile);
      free(gsiftp_tmpdir);
    
      return file_shutdown();
    }
    
    int gsiftp_setoptions(int options)
    {
      return file_setoptions(options);
    }
    
    int gsiftp_getoptions(int *options)
    {
      return file_getoptions(options);
    }
    
    int gsiftp_getversion(int *version)
    {
      return file_getversion(version);
    }
    
    int gsiftp_checkfile(char *urltype, char *infile, char *outfile)
    {
      return file_checkfile(urltype, infile, outfile);
    }
    
    int gsiftp_open(char *filename, int rwmode, int *handle)
    {
      FILE *gsiftpfile;
      int num_streams;
    
      if (getenv("GSIFTP_STREAMS")) {
        num_streams = (int)getenv("GSIFTP_STREAMS");
      } else {
        num_streams = 1;
      }
      
      if (rwmode) {
        gsiftpopen = 2;
      } else {
        gsiftpopen = 1;
      }
     
      if (gsiftpurl)
        free(gsiftpurl);
     
      gsiftpurl = strdup(filename);
    
      if (setjmp(env) != 0) {
        ffpmsg("Timeout (gsiftp_open)");
        goto error;
      }
      
      signal(SIGALRM, signal_handler);
      alarm(NETTIMEOUT);
    
      if (gsiftp_get(filename,&gsiftpfile,num_streams)) {
        alarm(0);
        ffpmsg("Unable to open gsiftp file (gsiftp_open)");
        ffpmsg(filename);
        goto error;
      } 
      
      fclose(gsiftpfile);
      
      signal(SIGALRM, SIG_DFL);
      alarm(0);
    
      return file_open(gsiftp_tmpfile, rwmode, handle);
    
      error:
       alarm(0);
       signal(SIGALRM, SIG_DFL);
       return (FILE_NOT_OPENED);
    }
    
    int gsiftp_create(char *filename, int *handle)
    {
      if (gsiftpurl)
        free(gsiftpurl);
    
      gsiftpurl = strdup(filename);
    
      return file_create(gsiftp_tmpfile, handle);
    }
    
    int gsiftp_truncate(int handle, LONGLONG filesize)
    {
      return file_truncate(handle, filesize);
    }
    
    int gsiftp_size(int handle, LONGLONG *filesize)
    {
      return file_size(handle, filesize);
    }
    
    int gsiftp_flush(int handle)
    {
      FILE *gsiftpfile;
      int num_streams;
    
      if (getenv("GSIFTP_STREAMS")) {
        num_streams = (int)getenv("GSIFTP_STREAMS");
      } else {
        num_streams = 1;
      }
      
      int rc = file_flush(handle);
    
      if (gsiftpopen != 1) {
      
        if (setjmp(env) != 0) {
          ffpmsg("Timeout (gsiftp_write)");
          goto error;
        }
      
        signal(SIGALRM, signal_handler);
        alarm(NETTIMEOUT);
    
        if (gsiftp_put(gsiftpurl,&gsiftpfile,num_streams)) {
          alarm(0);
          ffpmsg("Unable to open gsiftp file (gsiftp_flush)");
          ffpmsg(gsiftpurl);
          goto error;
        } 
      
        fclose(gsiftpfile);
      
        signal(SIGALRM, SIG_DFL);
        alarm(0);
      }
      
      return rc;
    
      error:
       alarm(0);
       signal(SIGALRM, SIG_DFL);
       return (FILE_NOT_OPENED);
    }
    
    int gsiftp_seek(int handle, LONGLONG offset)
    {
      return file_seek(handle, offset);
    }
    
    int gsiftp_read(int hdl, void *buffer, long nbytes)
    {
      return file_read(hdl, buffer, nbytes);
    }
    
    int gsiftp_write(int hdl, void *buffer, long nbytes)
    {
      return file_write(hdl, buffer, nbytes);
    }
    
    int gsiftp_close(int handle)
    {
        unlink(gsiftp_tmpfile);
        
        if (gsiftp_tmpdir)
            rmdir(gsiftp_tmpdir);
    
        return file_close(handle);
    }
    
    static void done_cb( void * 				user_arg,
                         globus_ftp_client_handle_t * 	handle,
                         globus_object_t * 			err)
    {
    
        if(err){
            fprintf(stderr, "%s", globus_object_printable_to_string(err));
        }
        
        globus_mutex_lock(&lock);
        done = GLOBUS_TRUE;
        globus_cond_signal(&cond);
        globus_mutex_unlock(&lock);
        return;
    }
    
    static void data_cb_read( void * 			user_arg,
                              globus_ftp_client_handle_t * 	handle,
                              globus_object_t * 		err,
                              globus_byte_t * 		buffer,
                              globus_size_t 		length,
                              globus_off_t 			offset,
                              globus_bool_t 		eof)
    {
        if(err) {
            fprintf(stderr, "%s", globus_object_printable_to_string(err));
        }
        else {
            FILE* fd = (FILE*) user_arg;
            int rc = fwrite(buffer, 1, length, fd);
            if (ferror(fd)) {
                printf("Read error in function data_cb_read; errno = %d\n", errno);
                return;
            }
    
            if (!eof) {
                globus_ftp_client_register_read(handle,
                                                buffer,
                                                MAX_BUFFER_SIZE_R,
                                                data_cb_read,
                                                (void*) fd);
            }
        }
        return;
    }
    
    static void data_cb_write( void * 			user_arg,
                               globus_ftp_client_handle_t * handle,
                               globus_object_t * 		err,
                               globus_byte_t * 		buffer,
                               globus_size_t 		length,
                               globus_off_t 		offset,
                               globus_bool_t 		eof)
    {
        int curr_offset;
        if(err) {
            fprintf(stderr, "%s", globus_object_printable_to_string(err));
        }
        else {
            if (!eof) {
                FILE* fd = (FILE*) user_arg;
                int rc;
                globus_mutex_lock(&lock);
                curr_offset = global_offset;
                rc = fread(buffer, 1, MAX_BUFFER_SIZE_W, fd);
                global_offset += rc;
                globus_mutex_unlock(&lock);
                if (ferror(fd)) {
                    printf("Read error in function data_cb_write; errno = %d\n", errno);
                    return;
                }
    
                globus_ftp_client_register_write(handle,
                                                 buffer,
    					     rc,
    					     curr_offset,
                                                 feof(fd) != 0,
                                                 data_cb_write,
                                                 (void*) fd);
            } else {
                globus_libc_free(buffer);
            }
        }
        return;
    }
    
    int gsiftp_get(char *filename, FILE **gsiftpfile, int num_streams)
    {
        char gsiurl[MAXLEN];
    
        globus_ftp_client_handle_t 		handle;
        globus_ftp_client_operationattr_t 	attr;
        globus_ftp_client_handleattr_t 	handle_attr;
        globus_ftp_control_parallelism_t   	parallelism;
        globus_ftp_control_layout_t		layout;
        globus_byte_t 			buffer[MAX_BUFFER_SIZE_R];
        globus_size_t buffer_length = sizeof(buffer);
        globus_result_t 			result;
        globus_ftp_client_restart_marker_t	restart;
        globus_ftp_control_type_t 		filetype;
       
        globus_module_activate(GLOBUS_FTP_CLIENT_MODULE);
        globus_mutex_init(&lock, GLOBUS_NULL);
        globus_cond_init(&cond, GLOBUS_NULL);
        globus_ftp_client_handle_init(&handle,  GLOBUS_NULL);
        globus_ftp_client_handleattr_init(&handle_attr);
        globus_ftp_client_operationattr_init(&attr);
        layout.mode = GLOBUS_FTP_CONTROL_STRIPING_NONE;
        globus_ftp_client_restart_marker_init(&restart);
        globus_ftp_client_operationattr_set_mode(
                &attr,
                GLOBUS_FTP_CONTROL_MODE_EXTENDED_BLOCK);
       
        if (num_streams >= 1)
        {
            parallelism.mode = GLOBUS_FTP_CONTROL_PARALLELISM_FIXED;
            parallelism.fixed.size = num_streams;
           
            globus_ftp_client_operationattr_set_parallelism(
                &attr,
                ¶llelism);
        }
       
        globus_ftp_client_operationattr_set_layout(&attr,
                                                   &layout);
       
        filetype = GLOBUS_FTP_CONTROL_TYPE_IMAGE;
        globus_ftp_client_operationattr_set_type (&attr,
                                                  filetype);
       
        globus_ftp_client_handle_init(&handle, &handle_attr);
       
        done = GLOBUS_FALSE;
    
        strcpy(gsiurl,"gsiftp://");
        strcat(gsiurl,filename);
    
        *gsiftpfile = fopen(gsiftp_tmpfile,"w+");
        
        if (!*gsiftpfile) {
            ffpmsg("Unable to open temporary file!");
            return (FILE_NOT_OPENED);
        }
       
        result = globus_ftp_client_get(&handle,
                                       gsiurl,
                                       &attr,
                                       &restart,
                                       done_cb,
                                       0);
        if(result != GLOBUS_SUCCESS) {
            globus_object_t * err;
            err = globus_error_get(result);
            fprintf(stderr, "%s", globus_object_printable_to_string(err));
            done = GLOBUS_TRUE;
        }
        else {
            globus_ftp_client_register_read(&handle,
                                            buffer,
                                            buffer_length,
                                            data_cb_read,
                                            (void*) *gsiftpfile);
        }
       
        globus_mutex_lock(&lock);
    
        while(!done) {
            globus_cond_wait(&cond, &lock);
        }
    
        globus_mutex_unlock(&lock);
        globus_ftp_client_handle_destroy(&handle);
        globus_module_deactivate_all();
       
        return 0;
    }
    
    int gsiftp_put(char *filename, FILE **gsiftpfile, int num_streams)
    {
        int i;
        char gsiurl[MAXLEN];
    
        globus_ftp_client_handle_t 		handle;
        globus_ftp_client_operationattr_t 	attr;
        globus_ftp_client_handleattr_t 	handle_attr;
        globus_ftp_control_parallelism_t   	parallelism;
        globus_ftp_control_layout_t		layout;
        globus_byte_t * 			buffer;
        globus_size_t buffer_length = sizeof(buffer);
        globus_result_t 			result;
        globus_ftp_client_restart_marker_t	restart;
        globus_ftp_control_type_t 		filetype;
       
        globus_module_activate(GLOBUS_FTP_CLIENT_MODULE);
        globus_mutex_init(&lock, GLOBUS_NULL);
        globus_cond_init(&cond, GLOBUS_NULL);
        globus_ftp_client_handle_init(&handle,  GLOBUS_NULL);
        globus_ftp_client_handleattr_init(&handle_attr);
        globus_ftp_client_operationattr_init(&attr);
        layout.mode = GLOBUS_FTP_CONTROL_STRIPING_NONE;
        globus_ftp_client_restart_marker_init(&restart);
        globus_ftp_client_operationattr_set_mode(
                &attr,
                GLOBUS_FTP_CONTROL_MODE_EXTENDED_BLOCK);
       
        if (num_streams >= 1)
        {
            parallelism.mode = GLOBUS_FTP_CONTROL_PARALLELISM_FIXED;
            parallelism.fixed.size = num_streams;
           
            globus_ftp_client_operationattr_set_parallelism(
                &attr,
                ¶llelism);
        }
       
        globus_ftp_client_operationattr_set_layout(&attr,
                                                   &layout);
       
        filetype = GLOBUS_FTP_CONTROL_TYPE_IMAGE;
        globus_ftp_client_operationattr_set_type (&attr,
                                                  filetype);
       
        globus_ftp_client_handle_init(&handle, &handle_attr);
       
        done = GLOBUS_FALSE;
        
        strcpy(gsiurl,"gsiftp://");
        strcat(gsiurl,filename);
    
        *gsiftpfile = fopen(gsiftp_tmpfile,"r");
    
        if (!*gsiftpfile) {
            ffpmsg("Unable to open temporary file!");
            return (FILE_NOT_OPENED);
        }
       
        result = globus_ftp_client_put(&handle,
                                       gsiurl,
                                       &attr,
                                       &restart,
                                       done_cb,
                                       0);
        if(result != GLOBUS_SUCCESS) {
            globus_object_t * err;
            err = globus_error_get(result);
            fprintf(stderr, "%s", globus_object_printable_to_string(err));
            done = GLOBUS_TRUE;
        }
        else {
            int rc;
            int curr_offset;
    
    	for (i = 0; i< 2 * num_streams && feof(*gsiftpfile) == 0; i++)
            {
                buffer = malloc(MAX_BUFFER_SIZE_W);
                globus_mutex_lock(&lock);
                curr_offset = global_offset;
                rc = fread(buffer, 1, MAX_BUFFER_SIZE_W, *gsiftpfile);
                global_offset += rc;
                globus_mutex_unlock(&lock);
                globus_ftp_client_register_write(
                    &handle,
                    buffer,
                    rc,
                    curr_offset,
                    feof(*gsiftpfile) != 0,
                    data_cb_write,
                    (void*) *gsiftpfile);
            }
        }
       
        globus_mutex_lock(&lock);
    
        while(!done) {
            globus_cond_wait(&cond, &lock);
        }
    
        globus_mutex_unlock(&lock);
        globus_ftp_client_handle_destroy(&handle);
        globus_module_deactivate_all();
       
        return 0;
    }
    
    static void signal_handler(int sig) {
    
      switch (sig) {
      case SIGALRM:    /* process for alarm */
        longjmp(env,sig);
        
      default: {
          /* Hmm, shouldn't have happend */
          exit(sig);
        }
      }
    }
    
    #endif
    #endif
    healpy-1.8.1/cfitsio/f77.inc0000654000175000017530000000152512272000775016156 0ustar  zoncaplanck00000000000000C     Codes for FITS extension types
          integer IMAGE_HDU, ASCII_TBL, BINARY_TBL
          parameter (
         &     IMAGE_HDU  = 0,
         &     ASCII_TBL  = 1,
         &     BINARY_TBL = 2  )
    
    C     Codes for FITS table data types
    
          integer TBIT,TBYTE,TLOGICAL,TSTRING,TSHORT,TINT
          integer TFLOAT,TDOUBLE,TCOMPLEX,TDBLCOMPLEX
          parameter (
         &     TBIT        =   1,
         &     TBYTE       =  11,
         &     TLOGICAL    =  14,
         &     TSTRING     =  16,
         &     TSHORT      =  21,
         &     TINT        =  31,
         &     TFLOAT      =  42,
         &     TDOUBLE     =  82,
         &     TCOMPLEX    =  83,
         &     TDBLCOMPLEX = 163  )
    
    C     Codes for iterator column types
    
          integer InputCol, InputOutputCol, OutputCol
          parameter (
         &     InputCol       = 0,
         &     InputOutputCol = 1,
         &     OutputCol      = 2  )
    
    healpy-1.8.1/cfitsio/FindPthreads.cmake0000654000175000017530000000621112272000775020432 0ustar  zoncaplanck00000000000000# - Find the Pthreads library
    # This module searches for the Pthreads library (including the
    # pthreads-win32 port).
    #
    # This module defines these variables:
    #
    #  PTHREADS_FOUND
    #      True if the Pthreads library was found
    #  PTHREADS_LIBRARY
    #      The location of the Pthreads library
    #  PTHREADS_INCLUDE_DIR
    #      The include path of the Pthreads library
    #  PTHREADS_DEFINITIONS
    #      Preprocessor definitions to define
    #
    # This module responds to the PTHREADS_EXCEPTION_SCHEME
    # variable on Win32 to allow the user to control the
    # library linked against.  The Pthreads-win32 port
    # provides the ability to link against a version of the
    # library with exception handling.  IT IS NOT RECOMMENDED
    # THAT YOU USE THIS because most POSIX thread implementations
    # do not support stack unwinding.
    #
    #  PTHREADS_EXCEPTION_SCHEME
    #      C  = no exceptions (default)
    #         (NOTE: This is the default scheme on most POSIX thread
    #          implementations and what you should probably be using)
    #      CE = C++ Exception Handling
    #      SE = Structure Exception Handling (MSVC only)
    #
    
    #
    # Define a default exception scheme to link against
    # and validate user choice.
    #
    IF(NOT DEFINED PTHREADS_EXCEPTION_SCHEME)
        # Assign default if needed
        SET(PTHREADS_EXCEPTION_SCHEME "C")
    ELSE(NOT DEFINED PTHREADS_EXCEPTION_SCHEME)
        # Validate
        IF(NOT PTHREADS_EXCEPTION_SCHEME STREQUAL "C" AND
           NOT PTHREADS_EXCEPTION_SCHEME STREQUAL "CE" AND
           NOT PTHREADS_EXCEPTION_SCHEME STREQUAL "SE")
    
        MESSAGE(FATAL_ERROR "See documentation for FindPthreads.cmake, only C, CE, and SE modes are allowed")
    
        ENDIF(NOT PTHREADS_EXCEPTION_SCHEME STREQUAL "C" AND
              NOT PTHREADS_EXCEPTION_SCHEME STREQUAL "CE" AND
              NOT PTHREADS_EXCEPTION_SCHEME STREQUAL "SE")
    
         IF(NOT MSVC AND PTHREADS_EXCEPTION_SCHEME STREQUAL "SE")
             MESSAGE(FATAL_ERROR "Structured Exception Handling is only allowed for MSVC")
         ENDIF(NOT MSVC AND PTHREADS_EXCEPTION_SCHEME STREQUAL "SE")
    
    ENDIF(NOT DEFINED PTHREADS_EXCEPTION_SCHEME)
    
    #
    # Find the header file
    #
    FIND_PATH(PTHREADS_INCLUDE_DIR pthread.h)
    
    #
    # Find the library
    #
    SET(names)
    IF(MSVC)
        SET(names
                pthreadV${PTHREADS_EXCEPTION_SCHEME}2
                pthread
        )
    ELSEIF(MINGW)
        SET(names
                pthreadG${PTHREADS_EXCEPTION_SCHEME}2
                pthread
        )
    ELSE(MSVC) # Unix / Cygwin / Apple
        SET(names pthread)
    ENDIF(MSVC)
        
    FIND_LIBRARY(PTHREADS_LIBRARY ${names}
        DOC "The Portable Threads Library")
    
    IF(PTHREADS_INCLUDE_DIR AND PTHREADS_LIBRARY)
        SET(PTHREADS_FOUND true)
        SET(PTHREADS_DEFINITIONS -DHAVE_PTHREAD_H)
        SET(PTHREADS_INCLUDE_DIRS ${PTHREADS_INCLUDE_DIR})
        SET(PTHREADS_LIBRARIES    ${PTHREADS_LIBRARY})
    ENDIF(PTHREADS_INCLUDE_DIR AND PTHREADS_LIBRARY)
    
    IF(PTHREADS_FOUND)
        IF(NOT PTHREADS_FIND_QUIETLY)
            MESSAGE(STATUS "Found Pthreads: ${PTHREADS_LIBRARY}")
        ENDIF(NOT PTHREADS_FIND_QUIETLY)
    ELSE(PTHREADS_FOUND) 
        IF(PTHREADS_FIND_REQUIRED)
            MESSAGE(FATAL_ERROR "Could not find the Pthreads Library")
        ENDIF(PTHREADS_FIND_REQUIRED)
    ENDIF(PTHREADS_FOUND)
    healpy-1.8.1/cfitsio/iraffits.c0000654000175000017530000016015412272000775017037 0ustar  zoncaplanck00000000000000/*------------------------------------------------------------------------*/
    /*                                                                        */
    /*  These routines have been modified by William Pence for use by CFITSIO */
    /*        The original files were provided by Doug Mink                   */
    /*------------------------------------------------------------------------*/
    
    /* File imhfile.c
     * August 6, 1998
     * By Doug Mink, based on Mike VanHilst's readiraf.c
    
     * Module:      imhfile.c (IRAF .imh image file reading and writing)
     * Purpose:     Read and write IRAF image files (and translate headers)
     * Subroutine:  irafrhead (filename, lfhead, fitsheader, lihead)
     *              Read IRAF image header
     * Subroutine:  irafrimage (fitsheader)
     *              Read IRAF image pixels (call after irafrhead)
     * Subroutine:	same_path (pixname, hdrname)
     *		Put filename and header path together
     * Subroutine:	iraf2fits (hdrname, irafheader, nbiraf, nbfits)
     *		Convert IRAF image header to FITS image header
     * Subroutine:  irafgeti4 (irafheader, offset)
     *		Get 4-byte integer from arbitrary part of IRAF header
     * Subroutine:  irafgetc2 (irafheader, offset)
     *		Get character string from arbitrary part of IRAF v.1 header
     * Subroutine:  irafgetc (irafheader, offset)
     *		Get character string from arbitrary part of IRAF header
     * Subroutine:  iraf2str (irafstring, nchar)
     * 		Convert 2-byte/char IRAF string to 1-byte/char string
     * Subroutine:	irafswap (bitpix,string,nbytes)
     *		Swap bytes in string in place, with FITS bits/pixel code
     * Subroutine:	irafswap2 (string,nbytes)
     *		Swap bytes in string in place
     * Subroutine	irafswap4 (string,nbytes)
     *		Reverse bytes of Integer*4 or Real*4 vector in place
     * Subroutine	irafswap8 (string,nbytes)
     *		Reverse bytes of Real*8 vector in place
    
    
     * Copyright:   2000 Smithsonian Astrophysical Observatory
     *              You may do anything you like with this file except remove
     *              this copyright.  The Smithsonian Astrophysical Observatory
     *              makes no representations about the suitability of this
     *              software for any purpose.  It is provided "as is" without
     *              express or implied warranty.
     */
    
    #include 		/* define stderr, FD, and NULL */
    #include 
    #include   /* stddef.h is apparently needed to define size_t */
    #include 
    
    #define FILE_NOT_OPENED 104
    
    /* Parameters from iraf/lib/imhdr.h for IRAF version 1 images */
    #define SZ_IMPIXFILE	 79		/* name of pixel storage file */
    #define SZ_IMHDRFILE	 79   		/* length of header storage file */
    #define SZ_IMTITLE	 79		/* image title string */
    #define LEN_IMHDR	2052		/* length of std header */
    
    /* Parameters from iraf/lib/imhdr.h for IRAF version 2 images */
    #define	SZ_IM2PIXFILE	255		/* name of pixel storage file */
    #define	SZ_IM2HDRFILE	255		/* name of header storage file */
    #define	SZ_IM2TITLE	383		/* image title string */
    #define LEN_IM2HDR	2046		/* length of std header */
    
    /* Offsets into header in bytes for parameters in IRAF version 1 images */
    #define IM_HDRLEN	 12		/* Length of header in 4-byte ints */
    #define IM_PIXTYPE       16             /* Datatype of the pixels */
    #define IM_NDIM          20             /* Number of dimensions */
    #define IM_LEN           24             /* Length (as stored) */
    #define IM_PHYSLEN       52             /* Physical length (as stored) */
    #define IM_PIXOFF        88             /* Offset of the pixels */
    #define IM_CTIME        108             /* Time of image creation */
    #define IM_MTIME        112             /* Time of last modification */
    #define IM_LIMTIME      116             /* Time of min,max computation */
    #define IM_MAX          120             /* Maximum pixel value */
    #define IM_MIN          124             /* Maximum pixel value */
    #define IM_PIXFILE      412             /* Name of pixel storage file */
    #define IM_HDRFILE      572             /* Name of header storage file */
    #define IM_TITLE        732             /* Image name string */
    
    /* Offsets into header in bytes for parameters in IRAF version 2 images */
    #define IM2_HDRLEN	  6		/* Length of header in 4-byte ints */
    #define IM2_PIXTYPE      10             /* Datatype of the pixels */
    #define IM2_SWAPPED      14             /* Pixels are byte swapped */
    #define IM2_NDIM         18             /* Number of dimensions */
    #define IM2_LEN          22             /* Length (as stored) */
    #define IM2_PHYSLEN      50             /* Physical length (as stored) */
    #define IM2_PIXOFF       86             /* Offset of the pixels */
    #define IM2_CTIME       106             /* Time of image creation */
    #define IM2_MTIME       110             /* Time of last modification */
    #define IM2_LIMTIME     114             /* Time of min,max computation */
    #define IM2_MAX         118             /* Maximum pixel value */
    #define IM2_MIN         122             /* Maximum pixel value */
    #define IM2_PIXFILE     126             /* Name of pixel storage file */
    #define IM2_HDRFILE     382             /* Name of header storage file */
    #define IM2_TITLE       638             /* Image name string */
    
    /* Codes from iraf/unix/hlib/iraf.h */
    #define	TY_CHAR		2
    #define	TY_SHORT	3
    #define	TY_INT		4
    #define	TY_LONG		5
    #define	TY_REAL		6
    #define	TY_DOUBLE	7
    #define	TY_COMPLEX	8
    #define TY_POINTER      9
    #define TY_STRUCT       10
    #define TY_USHORT       11
    #define TY_UBYTE        12
    
    #define LEN_PIXHDR	1024
    #define MAXINT  2147483647 /* Biggest number that can fit in long */
    
    static int isirafswapped(char *irafheader, int offset);
    static int irafgeti4(char *irafheader, int offset);
    static char *irafgetc2(char *irafheader, int offset, int nc);
    static char *irafgetc(char *irafheader,	int offset, int	nc);
    static char *iraf2str(char *irafstring, int nchar);
    static char *irafrdhead(const char *filename, int *lihead);
    static int irafrdimage (char **buffptr, size_t *buffsize,
        size_t *filesize, int *status);
    static int iraftofits (char *hdrname, char *irafheader, int nbiraf,
        char **buffptr, size_t *nbfits, size_t *fitssize, int *status);
    static char *same_path(char *pixname, const char *hdrname);
    
    static int swaphead=0;	/* =1 to swap data bytes of IRAF header values */
    static int swapdata=0;  /* =1 to swap bytes in IRAF data pixels */
    
    static void irafswap(int bitpix, char *string, int nbytes);
    static void irafswap2(char *string, int nbytes);
    static void irafswap4(char *string, int nbytes);
    static void irafswap8(char *string, int nbytes);
    static int pix_version (char *irafheader);
    static int irafncmp (char *irafheader, char *teststring, int nc);
    static int machswap(void);
    static int head_version (char *irafheader);
    static int hgeti4(char* hstring, char* keyword, int* val);
    static int hgets(char* hstring, char* keyword, int lstr, char* string);
    static char* hgetc(char* hstring, char* keyword);
    static char* ksearch(char* hstring, char* keyword);
    static char *blsearch (char* hstring, char* keyword);	
    static char *strsrch (char* s1,	char* s2);
    static char *strnsrch (	char* s1,char* s2,int ls1);
    static void hputi4(char* hstring,char* keyword,	int ival);
    static void hputs(char* hstring,char* keyword,char* cval);
    static void hputcom(char* hstring,char* keyword,char* comment);
    static void hputl(char* hstring,char* keyword,int lval);
    static void hputc(char* hstring,char* keyword,char* cval);
    static int getirafpixname (const char *hdrname, char *irafheader, char *pixfilename, int *status);
    int iraf2mem(char *filename, char **buffptr, size_t *buffsize, 
          size_t *filesize, int *status);
    
    void ffpmsg(const char *err_message);
    
    /* CFITS_API is defined below for use on Windows systems.  */
    /* It is used to identify the public functions which should be exported. */
    /* This has no effect on non-windows platforms where "WIN32" is not defined */
    
    /* this is only needed to export the "fits_delete_iraf_file" symbol, which */
    /* is called in fpackutil.c (and perhaps in other applications programs) */
    
    #if defined (WIN32)
      #if defined(cfitsio_EXPORTS)
        #define CFITS_API __declspec(dllexport)
      #else
        #define CFITS_API //__declspec(dllimport)
      #endif /* CFITS_API */
    #else /* defined (WIN32) */
     #define CFITS_API
    #endif
    
    int CFITS_API fits_delete_iraf_file(const char *filename, int *status);
    
    
    /*--------------------------------------------------------------------------*/
    int fits_delete_iraf_file(const char *filename,  /* name of input file      */
                 int *status)                        /* IO - error status       */
    
    /*
       Delete the iraf .imh header file and the associated .pix data file
    */
    {
        char *irafheader;
        int lenirafhead;
    
        char pixfilename[SZ_IM2PIXFILE+1];
    
        /* read IRAF header into dynamically created char array (free it later!) */
        irafheader = irafrdhead(filename, &lenirafhead);
    
        if (!irafheader)
        {
    	return(*status = FILE_NOT_OPENED);
        }
    
        getirafpixname (filename, irafheader, pixfilename, status);
    
        /* don't need the IRAF header any more */
        free(irafheader);
    
        if (*status > 0)
           return(*status);
    
        remove(filename);
        remove(pixfilename);
        
        return(*status);
    }
    
    /*--------------------------------------------------------------------------*/
    int iraf2mem(char *filename,     /* name of input file                 */
                 char **buffptr,     /* O - memory pointer (initially NULL)    */
                 size_t *buffsize,   /* O - size of mem buffer, in bytes        */
                 size_t *filesize,   /* O - size of FITS file, in bytes         */
                 int *status)        /* IO - error status                       */
    
    /*
       Driver routine that reads an IRAF image into memory, also converting
       it into FITS format.
    */
    {
        char *irafheader;
        int lenirafhead;
    
        *buffptr = NULL;
        *buffsize = 0;
        *filesize = 0;
    
        /* read IRAF header into dynamically created char array (free it later!) */
        irafheader = irafrdhead(filename, &lenirafhead);
    
        if (!irafheader)
        {
    	return(*status = FILE_NOT_OPENED);
        }
    
        /* convert IRAF header to FITS header in memory */
        iraftofits(filename, irafheader, lenirafhead, buffptr, buffsize, filesize,
                   status);
    
        /* don't need the IRAF header any more */
        free(irafheader);
    
        if (*status > 0)
           return(*status);
    
        *filesize = (((*filesize - 1) / 2880 ) + 1 ) * 2880; /* multiple of 2880 */
    
        /* append the image data onto the FITS header */
        irafrdimage(buffptr, buffsize, filesize, status);
    
        return(*status);
    }
    
    /*--------------------------------------------------------------------------*/
    /* Subroutine:	irafrdhead  (was irafrhead in D. Mink's original code)
     * Purpose:	Open and read the iraf .imh file.
     * Returns:	NULL if failure, else pointer to IRAF .imh image header
     * Notes:	The imhdr format is defined in iraf/lib/imhdr.h, some of
     *		which defines or mimicked, above.
     */
    
    static char *irafrdhead (
        const char *filename,  /* Name of IRAF header file */
        int *lihead)           /* Length of IRAF image header in bytes (returned) */
    {
        FILE *fd;
        int nbr;
        char *irafheader;
        char errmsg[81];
        long nbhead;
        int nihead;
    
        *lihead = 0;
    
        /* open the image header file */
        fd = fopen (filename, "rb");
        if (fd == NULL) {
            ffpmsg("unable to open IRAF header file:");
            ffpmsg(filename);
    	return (NULL);
    	}
    
        /* Find size of image header file */
        if (fseek(fd, 0, 2) != 0)  /* move to end of the file */
        {
            ffpmsg("IRAFRHEAD: cannot seek in file:");
            ffpmsg(filename);
            return(NULL);
        }
    
        nbhead = ftell(fd);     /* position = size of file */
        if (nbhead < 0)
        {
            ffpmsg("IRAFRHEAD: cannot get pos. in file:");
            ffpmsg(filename);
            return(NULL);
        }
    
        if (fseek(fd, 0, 0) != 0) /* move back to beginning */
        {
            ffpmsg("IRAFRHEAD: cannot seek to beginning of file:");
            ffpmsg(filename);
            return(NULL);
        }
    
        /* allocate initial sized buffer */
        nihead = nbhead + 5000;
        irafheader = (char *) calloc (1, nihead);
        if (irafheader == NULL) {
    	sprintf(errmsg, "IRAFRHEAD Cannot allocate %d-byte header",
    		      nihead);
            ffpmsg(errmsg);
            ffpmsg(filename);
    	return (NULL);
    	}
        *lihead = nihead;
    
        /* Read IRAF header */
        nbr = fread (irafheader, 1, nbhead, fd);
        fclose (fd);
    
        /* Reject if header less than minimum length */
        if (nbr < LEN_PIXHDR) {
    	sprintf(errmsg, "IRAFRHEAD header file: %d / %d bytes read.",
    		      nbr,LEN_PIXHDR);
            ffpmsg(errmsg);
            ffpmsg(filename);
    	free (irafheader);
    	return (NULL);
    	}
    
        return (irafheader);
    }
    /*--------------------------------------------------------------------------*/
    static int irafrdimage (
        char **buffptr,	/* FITS image header (filled) */
        size_t *buffsize,      /* allocated size of the buffer */
        size_t *filesize,      /* actual size of the FITS file */
        int *status)
    {
        FILE *fd;
        char *bang;
        int nax = 1, naxis1 = 1, naxis2 = 1, naxis3 = 1, naxis4 = 1, npaxis1 = 1, npaxis2;
        int bitpix, bytepix, i;
        char *fitsheader, *image;
        int nbr, nbimage, nbaxis, nbl, nbdiff;
        char *pixheader;
        char *linebuff;
        int imhver, lpixhead = 0;
        char pixname[SZ_IM2PIXFILE+1];
        char errmsg[81];
        size_t newfilesize;
     
        fitsheader = *buffptr;           /* pointer to start of header */
    
        /* Convert pixel file name to character string */
        hgets (fitsheader, "PIXFILE", SZ_IM2PIXFILE, pixname);
        hgeti4 (fitsheader, "PIXOFF", &lpixhead);
    
        /* Open pixel file, ignoring machine name if present */
        if ((bang = strchr (pixname, '!')) != NULL )
    	fd = fopen (bang + 1, "rb");
        else
    	fd = fopen (pixname, "rb");
    
        /* Print error message and exit if pixel file is not found */
        if (!fd) {
            ffpmsg("IRAFRIMAGE: Cannot open IRAF pixel file:");
            ffpmsg(pixname);
    	return (*status = FILE_NOT_OPENED);
    	}
    
        /* Read pixel header */
        pixheader = (char *) calloc (lpixhead, 1);
        if (pixheader == NULL) {
                ffpmsg("IRAFRIMAGE: Cannot alloc memory for pixel header");
                ffpmsg(pixname);
                fclose (fd);
    	    return (*status = FILE_NOT_OPENED);
    	}
        nbr = fread (pixheader, 1, lpixhead, fd);
    
        /* Check size of pixel header */
        if (nbr < lpixhead) {
    	sprintf(errmsg, "IRAF pixel file: %d / %d bytes read.",
    		      nbr,LEN_PIXHDR);
            ffpmsg(errmsg);
    	free (pixheader);
    	fclose (fd);
    	return (*status = FILE_NOT_OPENED);
    	}
    
        /* check pixel header magic word */
        imhver = pix_version (pixheader);
        if (imhver < 1) {
            ffpmsg("File not valid IRAF pixel file:");
            ffpmsg(pixname);
    	free (pixheader);
    	fclose (fd);
    	return (*status = FILE_NOT_OPENED);
    	}
        free (pixheader);
    
        /* Find number of bytes to read */
        hgeti4 (fitsheader,"NAXIS",&nax);
        hgeti4 (fitsheader,"NAXIS1",&naxis1);
        hgeti4 (fitsheader,"NPAXIS1",&npaxis1);
        if (nax > 1) {
            hgeti4 (fitsheader,"NAXIS2",&naxis2);
            hgeti4 (fitsheader,"NPAXIS2",&npaxis2);
    	}
        if (nax > 2)
            hgeti4 (fitsheader,"NAXIS3",&naxis3);
        if (nax > 3)
            hgeti4 (fitsheader,"NAXIS4",&naxis4);
    
        hgeti4 (fitsheader,"BITPIX",&bitpix);
        if (bitpix < 0)
    	bytepix = -bitpix / 8;
        else
    	bytepix = bitpix / 8;
    
        nbimage = naxis1 * naxis2 * naxis3 * naxis4 * bytepix;
        
        newfilesize = *filesize + nbimage;  /* header + data */
        newfilesize = (((newfilesize - 1) / 2880 ) + 1 ) * 2880;
    
        if (newfilesize > *buffsize)   /* need to allocate more memory? */
        {
          fitsheader =  (char *) realloc (*buffptr, newfilesize);
          if (fitsheader == NULL) {
    	sprintf(errmsg, "IRAFRIMAGE Cannot allocate %d-byte image buffer",
    		(int) (*filesize));
            ffpmsg(errmsg);
            ffpmsg(pixname);
    	fclose (fd);
    	return (*status = FILE_NOT_OPENED);
    	}
        }
    
        *buffptr = fitsheader;
        *buffsize = newfilesize;
    
        image = fitsheader + *filesize;
        *filesize = newfilesize;
    
        /* Read IRAF image all at once if physical and image dimensions are the same */
        if (npaxis1 == naxis1)
    	nbr = fread (image, 1, nbimage, fd);
    
        /* Read IRAF image one line at a time if physical and image dimensions differ */
        else {
    	nbdiff = (npaxis1 - naxis1) * bytepix;
    	nbaxis = naxis1 * bytepix;
    	linebuff = image;
    	nbr = 0;
    	if (naxis2 == 1 && naxis3 > 1)
    	    naxis2 = naxis3;
    	for (i = 0; i < naxis2; i++) {
    	    nbl = fread (linebuff, 1, nbaxis, fd);
    	    nbr = nbr + nbl;
    	    fseek (fd, nbdiff, 1);
    	    linebuff = linebuff + nbaxis;
    	    }
    	}
        fclose (fd);
    
        /* Check size of image */
        if (nbr < nbimage) {
    	sprintf(errmsg, "IRAF pixel file: %d / %d bytes read.",
    		      nbr,nbimage);
            ffpmsg(errmsg);
            ffpmsg(pixname);
    	return (*status = FILE_NOT_OPENED);
    	}
    
        /* Byte-reverse image, if necessary */
        if (swapdata)
    	irafswap (bitpix, image, nbimage);
    
        return (*status);
    }
    /*--------------------------------------------------------------------------*/
    /* Return IRAF image format version number from magic word in IRAF header*/
    
    static int head_version (
        char *irafheader)	/* IRAF image header from file */
    
    {
    
        /* Check header file magic word */
        if (irafncmp (irafheader, "imhdr", 5) != 0 ) {
    	if (strncmp (irafheader, "imhv2", 5) != 0)
    	    return (0);
    	else
    	    return (2);
    	}
        else
    	return (1);
    }
    
    /*--------------------------------------------------------------------------*/
    /* Return IRAF image format version number from magic word in IRAF pixel file */
    
    static int pix_version (
        char *irafheader)   /* IRAF image header from file */
    {
    
        /* Check pixel file header magic word */
        if (irafncmp (irafheader, "impix", 5) != 0) {
    	if (strncmp (irafheader, "impv2", 5) != 0)
    	    return (0);
    	else
    	    return (2);
    	}
        else
    	return (1);
    }
    
    /*--------------------------------------------------------------------------*/
    /* Verify that file is valid IRAF imhdr or impix by checking first 5 chars
     * Returns:	0 on success, 1 on failure */
    
    static int irafncmp (
    
    char	*irafheader,	/* IRAF image header from file */
    char	*teststring,	/* C character string to compare */
    int	nc)		/* Number of characters to compate */
    
    {
        char *line;
    
        if ((line = iraf2str (irafheader, nc)) == NULL)
    	return (1);
        if (strncmp (line, teststring, nc) == 0) {
    	free (line);
    	return (0);
    	}
        else {
    	free (line);
    	return (1);
    	}
    }
    /*--------------------------------------------------------------------------*/
    
    /* Convert IRAF image header to FITS image header, returning FITS header */
    
    static int iraftofits (
        char    *hdrname,  /* IRAF header file name (may be path) */
        char    *irafheader,  /* IRAF image header */
        int	    nbiraf,	  /* Number of bytes in IRAF header */
        char    **buffptr,    /* pointer to the FITS header  */
        size_t  *nbfits,      /* allocated size of the FITS header buffer */
        size_t  *fitssize,  /* Number of bytes in FITS header (returned) */
                            /*  = number of bytes to the end of the END keyword */
        int     *status)
    {
        char *objname;	/* object name from FITS file */
        int lstr, i, j, k, ib, nax, nbits;
        char *pixname, *newpixname, *bang, *chead;
        char *fitsheader;
        int nblock, nlines;
        char *fhead, *fhead1, *fp, endline[81];
        char irafchar;
        char fitsline[81];
        int pixtype;
        int imhver, n, imu, pixoff, impixoff;
    /*    int immax, immin, imtime;  */
        int imndim, imlen, imphyslen, impixtype;
        char errmsg[81];
    
        /* Set up last line of FITS header */
        (void)strncpy (endline,"END", 3);
        for (i = 3; i < 80; i++)
    	endline[i] = ' ';
        endline[80] = 0;
    
        /* Check header magic word */
        imhver = head_version (irafheader);
        if (imhver < 1) {
    	ffpmsg("File not valid IRAF image header");
            ffpmsg(hdrname);
    	return(*status = FILE_NOT_OPENED);
    	}
        if (imhver == 2) {
    	nlines = 24 + ((nbiraf - LEN_IM2HDR) / 81);
    	imndim = IM2_NDIM;
    	imlen = IM2_LEN;
    	imphyslen = IM2_PHYSLEN;
    	impixtype = IM2_PIXTYPE;
    	impixoff = IM2_PIXOFF;
    /*	imtime = IM2_MTIME; */
    /*	immax = IM2_MAX;  */
    /*	immin = IM2_MIN; */
    	}
        else {
    	nlines = 24 + ((nbiraf - LEN_IMHDR) / 162);
    	imndim = IM_NDIM;
    	imlen = IM_LEN;
    	imphyslen = IM_PHYSLEN;
    	impixtype = IM_PIXTYPE;
    	impixoff = IM_PIXOFF;
    /*	imtime = IM_MTIME; */
    /*	immax = IM_MAX; */
    /*	immin = IM_MIN; */
    	}
    
        /*  Initialize FITS header */
        nblock = (nlines * 80) / 2880;
        *nbfits = (nblock + 5) * 2880 + 4;
        fitsheader = (char *) calloc (*nbfits, 1);
        if (fitsheader == NULL) {
    	sprintf(errmsg, "IRAF2FITS Cannot allocate %d-byte FITS header",
    		(int) (*nbfits));
            ffpmsg(hdrname);
    	return (*status = FILE_NOT_OPENED);
    	}
    
        fhead = fitsheader;
        *buffptr = fitsheader;
        (void)strncpy (fitsheader, endline, 80);
        hputl (fitsheader, "SIMPLE", 1);
        fhead = fhead + 80;
    
        /*  check if the IRAF file is in big endian (sun) format (= 0) or not. */
        /*  This is done by checking the 4 byte integer in the header that     */
        /*  represents the iraf pixel type.  This 4-byte word is guaranteed to */
        /*  have the least sig byte != 0 and the most sig byte = 0,  so if the */
        /*  first byte of the word != 0, then the file in little endian format */
        /*  like on an Alpha machine.                                          */
    
        swaphead = isirafswapped(irafheader, impixtype);
        if (imhver == 1)
            swapdata = swaphead; /* vers 1 data has same swapness as header */
        else
            swapdata = irafgeti4 (irafheader, IM2_SWAPPED); 
    
        /*  Set pixel size in FITS header */
        pixtype = irafgeti4 (irafheader, impixtype);
        switch (pixtype) {
    	case TY_CHAR:
    	    nbits = 8;
    	    break;
    	case TY_UBYTE:
    	    nbits = 8;
    	    break;
    	case TY_SHORT:
    	    nbits = 16;
    	    break;
    	case TY_USHORT:
    	    nbits = -16;
    	    break;
    	case TY_INT:
    	case TY_LONG:
    	    nbits = 32;
    	    break;
    	case TY_REAL:
    	    nbits = -32;
    	    break;
    	case TY_DOUBLE:
    	    nbits = -64;
    	    break;
    	default:
    	    sprintf(errmsg,"Unsupported IRAF data type: %d", pixtype);
                ffpmsg(errmsg);
                ffpmsg(hdrname);
    	    return (*status = FILE_NOT_OPENED);
    	}
        hputi4 (fitsheader,"BITPIX",nbits);
        hputcom (fitsheader,"BITPIX", "IRAF .imh pixel type");
        fhead = fhead + 80;
    
        /*  Set image dimensions in FITS header */
        nax = irafgeti4 (irafheader, imndim);
        hputi4 (fitsheader,"NAXIS",nax);
        hputcom (fitsheader,"NAXIS", "IRAF .imh naxis");
        fhead = fhead + 80;
    
        n = irafgeti4 (irafheader, imlen);
        hputi4 (fitsheader, "NAXIS1", n);
        hputcom (fitsheader,"NAXIS1", "IRAF .imh image naxis[1]");
        fhead = fhead + 80;
    
        if (nax > 1) {
    	n = irafgeti4 (irafheader, imlen+4);
    	hputi4 (fitsheader, "NAXIS2", n);
    	hputcom (fitsheader,"NAXIS2", "IRAF .imh image naxis[2]");
            fhead = fhead + 80;
    	}
        if (nax > 2) {
    	n = irafgeti4 (irafheader, imlen+8);
    	hputi4 (fitsheader, "NAXIS3", n);
    	hputcom (fitsheader,"NAXIS3", "IRAF .imh image naxis[3]");
    	fhead = fhead + 80;
    	}
        if (nax > 3) {
    	n = irafgeti4 (irafheader, imlen+12);
    	hputi4 (fitsheader, "NAXIS4", n);
    	hputcom (fitsheader,"NAXIS4", "IRAF .imh image naxis[4]");
    	fhead = fhead + 80;
    	}
    
        /* Set object name in FITS header */
        if (imhver == 2)
    	objname = irafgetc (irafheader, IM2_TITLE, SZ_IM2TITLE);
        else
    	objname = irafgetc2 (irafheader, IM_TITLE, SZ_IMTITLE);
        if ((lstr = strlen (objname)) < 8) {
    	for (i = lstr; i < 8; i++)
    	    objname[i] = ' ';
    	objname[8] = 0;
    	}
        hputs (fitsheader,"OBJECT",objname);
        hputcom (fitsheader,"OBJECT", "IRAF .imh title");
        free (objname);
        fhead = fhead + 80;
    
        /* Save physical axis lengths so image file can be read */
        n = irafgeti4 (irafheader, imphyslen);
        hputi4 (fitsheader, "NPAXIS1", n);
        hputcom (fitsheader,"NPAXIS1", "IRAF .imh physical naxis[1]");
        fhead = fhead + 80;
        if (nax > 1) {
    	n = irafgeti4 (irafheader, imphyslen+4);
    	hputi4 (fitsheader, "NPAXIS2", n);
    	hputcom (fitsheader,"NPAXIS2", "IRAF .imh physical naxis[2]");
    	fhead = fhead + 80;
    	}
        if (nax > 2) {
    	n = irafgeti4 (irafheader, imphyslen+8);
    	hputi4 (fitsheader, "NPAXIS3", n);
    	hputcom (fitsheader,"NPAXIS3", "IRAF .imh physical naxis[3]");
    	fhead = fhead + 80;
    	}
        if (nax > 3) {
    	n = irafgeti4 (irafheader, imphyslen+12);
    	hputi4 (fitsheader, "NPAXIS4", n);
    	hputcom (fitsheader,"NPAXIS4", "IRAF .imh physical naxis[4]");
    	fhead = fhead + 80;
    	}
    
        /* Save image header filename in header */
        hputs (fitsheader,"IMHFILE",hdrname);
        hputcom (fitsheader,"IMHFILE", "IRAF header file name");
        fhead = fhead + 80;
    
        /* Save image pixel file pathname in header */
        if (imhver == 2)
    	pixname = irafgetc (irafheader, IM2_PIXFILE, SZ_IM2PIXFILE);
        else
    	pixname = irafgetc2 (irafheader, IM_PIXFILE, SZ_IMPIXFILE);
        if (strncmp(pixname, "HDR", 3) == 0 ) {
    	newpixname = same_path (pixname, hdrname);
            if (newpixname) {
              free (pixname);
              pixname = newpixname;
    	  }
    	}
        if (strchr (pixname, '/') == NULL && strchr (pixname, '$') == NULL) {
    	newpixname = same_path (pixname, hdrname);
            if (newpixname) {
              free (pixname);
              pixname = newpixname;
    	  }
    	}
    	
        if ((bang = strchr (pixname, '!')) != NULL )
    	hputs (fitsheader,"PIXFILE",bang+1);
        else
    	hputs (fitsheader,"PIXFILE",pixname);
        free (pixname);
        hputcom (fitsheader,"PIXFILE", "IRAF .pix pixel file");
        fhead = fhead + 80;
    
        /* Save image offset from star of pixel file */
        pixoff = irafgeti4 (irafheader, impixoff);
        pixoff = (pixoff - 1) * 2;
        hputi4 (fitsheader, "PIXOFF", pixoff);
        hputcom (fitsheader,"PIXOFF", "IRAF .pix pixel offset (Do not change!)");
        fhead = fhead + 80;
    
        /* Save IRAF file format version in header */
        hputi4 (fitsheader,"IMHVER",imhver);
        hputcom (fitsheader,"IMHVER", "IRAF .imh format version (1 or 2)");
        fhead = fhead + 80;
    
        /* Save flag as to whether to swap IRAF data for this file and machine */
        if (swapdata)
    	hputl (fitsheader, "PIXSWAP", 1);
        else
    	hputl (fitsheader, "PIXSWAP", 0);
        hputcom (fitsheader,"PIXSWAP", "IRAF pixels, FITS byte orders differ if T");
        fhead = fhead + 80;
    
        /* Add user portion of IRAF header to FITS header */
        fitsline[80] = 0;
        if (imhver == 2) {
    	imu = LEN_IM2HDR;
    	chead = irafheader;
    	j = 0;
    	for (k = 0; k < 80; k++)
    	    fitsline[k] = ' ';
    	for (i = imu; i < nbiraf; i++) {
    	    irafchar = chead[i];
    	    if (irafchar == 0)
    		break;
    	    else if (irafchar == 10) {
    		(void)strncpy (fhead, fitsline, 80);
    		/* fprintf (stderr,"%80s\n",fitsline); */
    		if (strncmp (fitsline, "OBJECT ", 7) != 0) {
    		    fhead = fhead + 80;
    		    }
    		for (k = 0; k < 80; k++)
    		    fitsline[k] = ' ';
    		j = 0;
    		}
    	    else {
    		if (j > 80) {
    		    if (strncmp (fitsline, "OBJECT ", 7) != 0) {
    			(void)strncpy (fhead, fitsline, 80);
    			/* fprintf (stderr,"%80s\n",fitsline); */
    			j = 9;
    			fhead = fhead + 80;
    			}
    		    for (k = 0; k < 80; k++)
    			fitsline[k] = ' ';
    		    }
    		if (irafchar > 32 && irafchar < 127)
    		    fitsline[j] = irafchar;
    		j++;
    		}
    	    }
    	}
        else {
    	imu = LEN_IMHDR;
    	chead = irafheader;
    	if (swaphead == 1)
    	    ib = 0;
    	else
    	    ib = 1;
    	for (k = 0; k < 80; k++)
    	    fitsline[k] = ' ';
    	j = 0;
    	for (i = imu; i < nbiraf; i=i+2) {
    	    irafchar = chead[i+ib];
    	    if (irafchar == 0)
    		break;
    	    else if (irafchar == 10) {
    		if (strncmp (fitsline, "OBJECT ", 7) != 0) {
    		    (void)strncpy (fhead, fitsline, 80);
    		    fhead = fhead + 80;
    		    }
    		/* fprintf (stderr,"%80s\n",fitsline); */
    		j = 0;
    		for (k = 0; k < 80; k++)
    		    fitsline[k] = ' ';
    		}
    	    else {
    		if (j > 80) {
    		    if (strncmp (fitsline, "OBJECT ", 7) != 0) {
    			(void)strncpy (fhead, fitsline, 80);
    			j = 9;
    			fhead = fhead + 80;
    			}
    		    /* fprintf (stderr,"%80s\n",fitsline); */
    		    for (k = 0; k < 80; k++)
    			fitsline[k] = ' ';
    		    }
    		if (irafchar > 32 && irafchar < 127)
    		    fitsline[j] = irafchar;
    		j++;
    		}
    	    }
    	}
    
        /* Add END to last line */
        (void)strncpy (fhead, endline, 80);
    
        /* Find end of last 2880-byte block of header */
        fhead = ksearch (fitsheader, "END") + 80;
        nblock = *nbfits / 2880;
        fhead1 = fitsheader + (nblock * 2880);
        *fitssize = fhead - fitsheader;  /* no. of bytes to end of END keyword */
    
        /* Pad rest of header with spaces */
        strncpy (endline,"   ",3);
        for (fp = fhead; fp < fhead1; fp = fp + 80) {
    	(void)strncpy (fp, endline,80);
    	}
    
        return (*status);
    }
    /*--------------------------------------------------------------------------*/
    
    /* get the IRAF pixel file name */
    
    static int getirafpixname (
        const char *hdrname,  /* IRAF header file name (may be path) */
        char    *irafheader,  /* IRAF image header */
        char    *pixfilename,     /* IRAF pixel file name */
        int     *status)
    {
        int imhver;
        char *pixname, *newpixname, *bang;
    
        /* Check header magic word */
        imhver = head_version (irafheader);
        if (imhver < 1) {
    	ffpmsg("File not valid IRAF image header");
            ffpmsg(hdrname);
    	return(*status = FILE_NOT_OPENED);
    	}
    
        /* get image pixel file pathname in header */
        if (imhver == 2)
    	pixname = irafgetc (irafheader, IM2_PIXFILE, SZ_IM2PIXFILE);
        else
    	pixname = irafgetc2 (irafheader, IM_PIXFILE, SZ_IMPIXFILE);
    
        if (strncmp(pixname, "HDR", 3) == 0 ) {
    	newpixname = same_path (pixname, hdrname);
            if (newpixname) {
              free (pixname);
              pixname = newpixname;
    	  }
    	}
    
        if (strchr (pixname, '/') == NULL && strchr (pixname, '$') == NULL) {
    	newpixname = same_path (pixname, hdrname);
            if (newpixname) {
              free (pixname);
              pixname = newpixname;
    	  }
    	}
    	
        if ((bang = strchr (pixname, '!')) != NULL )
    	strcpy(pixfilename,bang+1);
        else
    	strcpy(pixfilename,pixname);
    
        free (pixname);
    
        return (*status);
    }
    
    /*--------------------------------------------------------------------------*/
    /* Put filename and header path together */
    
    static char *same_path (
    
    char	*pixname,	/* IRAF pixel file pathname */
    const char	*hdrname)	/* IRAF image header file pathname */
    
    {
        int len;
        char *newpixname;
    
    /*  WDP - 10/16/2007 - increased allocation to avoid possible overflow */
    /*    newpixname = (char *) calloc (SZ_IM2PIXFILE, sizeof (char)); */
    
        newpixname = (char *) calloc (2*SZ_IM2PIXFILE+1, sizeof (char));
        if (newpixname == NULL) {
                ffpmsg("iraffits same_path: Cannot alloc memory for newpixname");
    	    return (NULL);
    	}
    
        /* Pixel file is in same directory as header */
        if (strncmp(pixname, "HDR$", 4) == 0 ) {
    	(void)strncpy (newpixname, hdrname, SZ_IM2PIXFILE);
    
    	/* find the end of the pathname */
    	len = strlen (newpixname);
    #ifndef VMS
    	while( (len > 0) && (newpixname[len-1] != '/') )
    #else
    	while( (len > 0) && (newpixname[len-1] != ']') && (newpixname[len-1] != ':') )
    #endif
    	    len--;
    
    	/* add name */
    	newpixname[len] = '\0';
    	(void)strncat (newpixname, &pixname[4], SZ_IM2PIXFILE);
    	}
    
        /* Bare pixel file with no path is assumed to be same as HDR$filename */
        else if (strchr (pixname, '/') == NULL && strchr (pixname, '$') == NULL) {
    	(void)strncpy (newpixname, hdrname, SZ_IM2PIXFILE);
    
    	/* find the end of the pathname */
    	len = strlen (newpixname);
    #ifndef VMS
    	while( (len > 0) && (newpixname[len-1] != '/') )
    #else
    	while( (len > 0) && (newpixname[len-1] != ']') && (newpixname[len-1] != ':') )
    #endif
    	    len--;
    
    	/* add name */
    	newpixname[len] = '\0';
    	(void)strncat (newpixname, pixname, SZ_IM2PIXFILE);
    	}
    
        /* Pixel file has same name as header file, but with .pix extension */
        else if (strncmp (pixname, "HDR", 3) == 0) {
    
    	/* load entire header name string into name buffer */
    	(void)strncpy (newpixname, hdrname, SZ_IM2PIXFILE);
    	len = strlen (newpixname);
    	newpixname[len-3] = 'p';
    	newpixname[len-2] = 'i';
    	newpixname[len-1] = 'x';
    	}
    
        return (newpixname);
    }
    
    /*--------------------------------------------------------------------------*/
    static int isirafswapped (
    
    char	*irafheader,	/* IRAF image header */
    int	offset)		/* Number of bytes to skip before number */
    
        /*  check if the IRAF file is in big endian (sun) format (= 0) or not */
        /*  This is done by checking the 4 byte integer in the header that */
        /*  represents the iraf pixel type.  This 4-byte word is guaranteed to */
        /*  have the least sig byte != 0 and the most sig byte = 0,  so if the */
        /*  first byte of the word != 0, then the file in little endian format */
        /*  like on an Alpha machine.                                          */
    
    {
        int  swapped;
    
        if (irafheader[offset] != 0)
    	swapped = 1;
        else
    	swapped = 0;
    
        return (swapped);
    }
    /*--------------------------------------------------------------------------*/
    static int irafgeti4 (
    
    char	*irafheader,	/* IRAF image header */
    int	offset)		/* Number of bytes to skip before number */
    
    {
        char *ctemp, *cheader;
        int  temp;
    
        cheader = irafheader;
        ctemp = (char *) &temp;
    
        if (machswap() != swaphead) {
    	ctemp[3] = cheader[offset];
    	ctemp[2] = cheader[offset+1];
    	ctemp[1] = cheader[offset+2];
    	ctemp[0] = cheader[offset+3];
    	}
        else {
    	ctemp[0] = cheader[offset];
    	ctemp[1] = cheader[offset+1];
    	ctemp[2] = cheader[offset+2];
    	ctemp[3] = cheader[offset+3];
    	}
        return (temp);
    }
    
    /*--------------------------------------------------------------------------*/
    /* IRAFGETC2 -- Get character string from arbitrary part of v.1 IRAF header */
    
    static char *irafgetc2 (
    
    char	*irafheader,	/* IRAF image header */
    int	offset,		/* Number of bytes to skip before string */
    int	nc)		/* Maximum number of characters in string */
    
    {
        char *irafstring, *string;
    
        irafstring = irafgetc (irafheader, offset, 2*(nc+1));
        string = iraf2str (irafstring, nc);
        free (irafstring);
    
        return (string);
    }
    
    /*--------------------------------------------------------------------------*/
    /* IRAFGETC -- Get character string from arbitrary part of IRAF header */
    
    static char *irafgetc (
    
    char	*irafheader,	/* IRAF image header */
    int	offset,		/* Number of bytes to skip before string */
    int	nc)		/* Maximum number of characters in string */
    
    {
        char *ctemp, *cheader;
        int i;
    
        cheader = irafheader;
        ctemp = (char *) calloc (nc+1, 1);
        if (ctemp == NULL) {
    	ffpmsg("IRAFGETC Cannot allocate memory for string variable");
    	return (NULL);
    	}
        for (i = 0; i < nc; i++) {
    	ctemp[i] = cheader[offset+i];
    	if (ctemp[i] > 0 && ctemp[i] < 32)
    	    ctemp[i] = ' ';
    	}
    
        return (ctemp);
    }
    
    /*--------------------------------------------------------------------------*/
    /* Convert IRAF 2-byte/char string to 1-byte/char string */
    
    static char *iraf2str (
    
    char	*irafstring,	/* IRAF 2-byte/character string */
    int	nchar)		/* Number of characters in string */
    {
        char *string;
        int i, j;
    
        string = (char *) calloc (nchar+1, 1);
        if (string == NULL) {
    	ffpmsg("IRAF2STR Cannot allocate memory for string variable");
    	return (NULL);
    	}
    
        /* the chars are in bytes 1, 3, 5, ... if bigendian format (SUN) */
        /* else in bytes 0, 2, 4, ... if little endian format (Alpha)    */
    
        if (irafstring[0] != 0)
    	j = 0;
        else
    	j = 1;
    
        /* Convert appropriate byte of input to output character */
        for (i = 0; i < nchar; i++) {
    	string[i] = irafstring[j];
    	j = j + 2;
    	}
    
        return (string);
    }
    
    /*--------------------------------------------------------------------------*/
    /* IRAFSWAP -- Reverse bytes of any type of vector in place */
    
    static void irafswap (
    
    int	bitpix,		/* Number of bits per pixel */
    			/*  16 = short, -16 = unsigned short, 32 = int */
    			/* -32 = float, -64 = double */
    char	*string,	/* Address of starting point of bytes to swap */
    int	nbytes)		/* Number of bytes to swap */
    
    {
        switch (bitpix) {
    
    	case 16:
    	    if (nbytes < 2) return;
    	    irafswap2 (string,nbytes);
    	    break;
    
    	case 32:
    	    if (nbytes < 4) return;
    	    irafswap4 (string,nbytes);
    	    break;
    
    	case -16:
    	    if (nbytes < 2) return;
    	    irafswap2 (string,nbytes);
    	    break;
    
    	case -32:
    	    if (nbytes < 4) return;
    	    irafswap4 (string,nbytes);
    	    break;
    
    	case -64:
    	    if (nbytes < 8) return;
    	    irafswap8 (string,nbytes);
    	    break;
    
    	}
        return;
    }
    
    /*--------------------------------------------------------------------------*/
    /* IRAFSWAP2 -- Swap bytes in string in place */
    
    static void irafswap2 (
    
    char *string,	/* Address of starting point of bytes to swap */
    int nbytes)	/* Number of bytes to swap */
    
    {
        char *sbyte, temp, *slast;
    
        slast = string + nbytes;
        sbyte = string;
        while (sbyte < slast) {
    	temp = sbyte[0];
    	sbyte[0] = sbyte[1];
    	sbyte[1] = temp;
    	sbyte= sbyte + 2;
    	}
        return;
    }
    
    /*--------------------------------------------------------------------------*/
    /* IRAFSWAP4 -- Reverse bytes of Integer*4 or Real*4 vector in place */
    
    static void irafswap4 (
    
    char *string,	/* Address of Integer*4 or Real*4 vector */
    int nbytes)	/* Number of bytes to reverse */
    
    {
        char *sbyte, *slast;
        char temp0, temp1, temp2, temp3;
    
        slast = string + nbytes;
        sbyte = string;
        while (sbyte < slast) {
    	temp3 = sbyte[0];
    	temp2 = sbyte[1];
    	temp1 = sbyte[2];
    	temp0 = sbyte[3];
    	sbyte[0] = temp0;
    	sbyte[1] = temp1;
    	sbyte[2] = temp2;
    	sbyte[3] = temp3;
    	sbyte = sbyte + 4;
    	}
    
        return;
    }
    
    /*--------------------------------------------------------------------------*/
    /* IRAFSWAP8 -- Reverse bytes of Real*8 vector in place */
    
    static void irafswap8 (
    
    char *string,	/* Address of Real*8 vector */
    int nbytes)	/* Number of bytes to reverse */
    
    {
        char *sbyte, *slast;
        char temp[8];
    
        slast = string + nbytes;
        sbyte = string;
        while (sbyte < slast) {
    	temp[7] = sbyte[0];
    	temp[6] = sbyte[1];
    	temp[5] = sbyte[2];
    	temp[4] = sbyte[3];
    	temp[3] = sbyte[4];
    	temp[2] = sbyte[5];
    	temp[1] = sbyte[6];
    	temp[0] = sbyte[7];
    	sbyte[0] = temp[0];
    	sbyte[1] = temp[1];
    	sbyte[2] = temp[2];
    	sbyte[3] = temp[3];
    	sbyte[4] = temp[4];
    	sbyte[5] = temp[5];
    	sbyte[6] = temp[6];
    	sbyte[7] = temp[7];
    	sbyte = sbyte + 8;
    	}
        return;
    }
    
    /*--------------------------------------------------------------------------*/
    static int
    machswap (void)
    
    {
        char *ctest;
        int itest;
    
        itest = 1;
        ctest = (char *)&itest;
        if (*ctest)
    	return (1);
        else
    	return (0);
    }
    
    /*--------------------------------------------------------------------------*/
    /*             the following routines were originally in hget.c             */
    /*--------------------------------------------------------------------------*/
    
    
    static int lhead0 = 0;
    
    /*--------------------------------------------------------------------------*/
    
    /* Extract long value for variable from FITS header string */
    
    static int
    hgeti4 (hstring,keyword,ival)
    
    char *hstring;	/* character string containing FITS header information
    		   in the format =  {/ } */
    char *keyword;	/* character string containing the name of the keyword
    		   the value of which is returned.  hget searches for a
    		   line beginning with this string.  if "[n]" is present,
    		   the n'th token in the value is returned.
    		   (the first 8 characters must be unique) */
    int *ival;
    {
    char *value;
    double dval;
    int minint;
    char val[30]; 
    
    /* Get value and comment from header string */
    	value = hgetc (hstring,keyword);
    
    /* Translate value from ASCII to binary */
    	if (value != NULL) {
    	    minint = -MAXINT - 1;
    	    strcpy (val, value);
    	    dval = atof (val);
    	    if (dval+0.001 > MAXINT)
    		*ival = MAXINT;
    	    else if (dval >= 0)
    		*ival = (int) (dval + 0.001);
    	    else if (dval-0.001 < minint)
    		*ival = minint;
    	    else
    		*ival = (int) (dval - 0.001);
    	    return (1);
    	    }
    	else {
    	    return (0);
    	    }
    }
    
    /*-------------------------------------------------------------------*/
    /* Extract string value for variable from FITS header string */
    
    static int
    hgets (hstring, keyword, lstr, str)
    
    char *hstring;	/* character string containing FITS header information
    		   in the format =  {/ } */
    char *keyword;	/* character string containing the name of the keyword
    		   the value of which is returned.  hget searches for a
    		   line beginning with this string.  if "[n]" is present,
    		   the n'th token in the value is returned.
    		   (the first 8 characters must be unique) */
    int lstr;	/* Size of str in characters */
    char *str;	/* String (returned) */
    {
    	char *value;
    	int lval;
    
    /* Get value and comment from header string */
    	value = hgetc (hstring,keyword);
    
    	if (value != NULL) {
    	    lval = strlen (value);
    	    if (lval < lstr)
    		strcpy (str, value);
    	    else if (lstr > 1)
    		strncpy (str, value, lstr-1);
    	    else
    		str[0] = value[0];
    	    return (1);
    	    }
    	else
    	    return (0);
    }
    
    /*-------------------------------------------------------------------*/
    /* Extract character value for variable from FITS header string */
    
    static char *
    hgetc (hstring,keyword0)
    
    char *hstring;	/* character string containing FITS header information
    		   in the format =  {/ } */
    char *keyword0;	/* character string containing the name of the keyword
    		   the value of which is returned.  hget searches for a
    		   line beginning with this string.  if "[n]" is present,
    		   the n'th token in the value is returned.
    		   (the first 8 characters must be unique) */
    {
    	static char cval[80];
    	char *value;
    	char cwhite[2];
    	char squot[2], dquot[2], lbracket[2], rbracket[2], slash[2], comma[2];
    	char keyword[81]; /* large for ESO hierarchical keywords */
    	char line[100];
    	char *vpos, *cpar = NULL;
    	char *q1, *q2 = NULL, *v1, *v2, *c1, *brack1, *brack2;
    	int ipar, i;
    
    	squot[0] = 39;
    	squot[1] = 0;
    	dquot[0] = 34;
    	dquot[1] = 0;
    	lbracket[0] = 91;
    	lbracket[1] = 0;
    	comma[0] = 44;
    	comma[1] = 0;
    	rbracket[0] = 93;
    	rbracket[1] = 0;
    	slash[0] = 47;
    	slash[1] = 0;
    
    /* Find length of variable name */
    	strncpy (keyword,keyword0, sizeof(keyword)-1);
    	brack1 = strsrch (keyword,lbracket);
    	if (brack1 == NULL)
    	    brack1 = strsrch (keyword,comma);
    	if (brack1 != NULL) {
    	    *brack1 = '\0';
    	    brack1++;
    	    }
    
    /* Search header string for variable name */
    	vpos = ksearch (hstring,keyword);
    
    /* Exit if not found */
    	if (vpos == NULL) {
    	    return (NULL);
    	    }
    
    /* Initialize line to nulls */
    	 for (i = 0; i < 100; i++)
    	    line[i] = 0;
    
    /* In standard FITS, data lasts until 80th character */
    
    /* Extract entry for this variable from the header */
    	strncpy (line,vpos,80);
    
    /* check for quoted value */
    	q1 = strsrch (line,squot);
    	c1 = strsrch (line,slash);
    	if (q1 != NULL) {
    	    if (c1 != NULL && q1 < c1)
    		q2 = strsrch (q1+1,squot);
    	    else if (c1 == NULL)
    		q2 = strsrch (q1+1,squot);
    	    else
    		q1 = NULL;
    	    }
    	else {
    	    q1 = strsrch (line,dquot);
    	    if (q1 != NULL) {
    		if (c1 != NULL && q1 < c1)
    		    q2 = strsrch (q1+1,dquot);
    		else if (c1 == NULL)
    		    q2 = strsrch (q1+1,dquot);
    		else
    		    q1 = NULL;
    		}
    	    else {
    		q1 = NULL;
    		q2 = line + 10;
    		}
    	    }
    
    /* Extract value and remove excess spaces */
    	if (q1 != NULL) {
    	    v1 = q1 + 1;
    	    v2 = q2;
    	    c1 = strsrch (q2,"/");
    	    }
    	else {
    	    v1 = strsrch (line,"=") + 1;
    	    c1 = strsrch (line,"/");
    	    if (c1 != NULL)
    		v2 = c1;
    	    else
    		v2 = line + 79;
    	    }
    
    /* Ignore leading spaces */
    	while (*v1 == ' ' && v1 < v2) {
    	    v1++;
    	    }
    
    /* Drop trailing spaces */
    	*v2 = '\0';
    	v2--;
    	while (*v2 == ' ' && v2 > v1) {
    	    *v2 = '\0';
    	    v2--;
    	    }
    
    	if (!strcmp (v1, "-0"))
    	    v1++;
    	strcpy (cval,v1);
    	value = cval;
    
    /* If keyword has brackets, extract appropriate token from value */
    	if (brack1 != NULL) {
    	    brack2 = strsrch (brack1,rbracket);
    	    if (brack2 != NULL)
    		*brack2 = '\0';
    	    ipar = atoi (brack1);
    	    if (ipar > 0) {
    		cwhite[0] = ' ';
    		cwhite[1] = '\0';
    		for (i = 1; i <= ipar; i++) {
    		    cpar = strtok (v1,cwhite);
    		    v1 = NULL;
    		    }
    		if (cpar != NULL) {
    		    strcpy (cval,cpar);
    		    }
    		else
    		    value = NULL;
    		}
    	    }
    
    	return (value);
    }
    
    
    /*-------------------------------------------------------------------*/
    /* Find beginning of fillable blank line before FITS header keyword line */
    
    static char *
    blsearch (hstring,keyword)
    
    /* Find entry for keyword keyword in FITS header string hstring.
       (the keyword may have a maximum of eight letters)
       NULL is returned if the keyword is not found */
    
    char *hstring;	/* character string containing fits-style header
    		information in the format =  {/ }
    		the default is that each entry is 80 characters long;
    		however, lines may be of arbitrary length terminated by
    		nulls, carriage returns or linefeeds, if packed is true.  */
    char *keyword;	/* character string containing the name of the variable
    		to be returned.  ksearch searches for a line beginning
    		with this string.  The string may be a character
    		literal or a character variable terminated by a null
    		or '$'.  it is truncated to 8 characters. */
    {
        char *loc, *headnext, *headlast, *pval, *lc, *line;
        char *bval;
        int icol, nextchar, lkey, nleft, lhstr;
    
        pval = 0;
    
        /* Search header string for variable name */
        if (lhead0)
    	lhstr = lhead0;
        else {
    	lhstr = 0;
    	while (lhstr < 57600 && hstring[lhstr] != 0)
    	    lhstr++;
    	}
        headlast = hstring + lhstr;
        headnext = hstring;
        pval = NULL;
        while (headnext < headlast) {
    	nleft = headlast - headnext;
    	loc = strnsrch (headnext, keyword, nleft);
    
    	/* Exit if keyword is not found */
    	if (loc == NULL) {
    	    break;
    	    }
    
    	icol = (loc - hstring) % 80;
    	lkey = strlen (keyword);
    	nextchar = (int) *(loc + lkey);
    
    	/* If this is not in the first 8 characters of a line, keep searching */
    	if (icol > 7)
    	    headnext = loc + 1;
    
    	/* If parameter name in header is longer, keep searching */
    	else if (nextchar != 61 && nextchar > 32 && nextchar < 127)
    	    headnext = loc + 1;
    
    	/* If preceeding characters in line are not blanks, keep searching */
    	else {
    	    line = loc - icol;
    	    for (lc = line; lc < loc; lc++) {
    		if (*lc != ' ')
    		    headnext = loc + 1;
    		}
    
    	/* Return pointer to start of line if match */
    	    if (loc >= headnext) {
    		pval = line;
    		break;
    		}
    	    }
    	}
    
        /* Return NULL if keyword is found at start of FITS header string */
        if (pval == NULL)
    	return (pval);
    
        /* Return NULL if  found the first keyword in the header */
        if (pval == hstring)
            return (NULL);
    
        /* Find last nonblank line before requested keyword */
        bval = pval - 80;
        while (!strncmp (bval,"        ",8))
    	bval = bval - 80;
        bval = bval + 80;
    
        /* Return pointer to calling program if blank lines found */
        if (bval < pval)
    	return (bval);
        else
    	return (NULL);
    }
    
    
    /*-------------------------------------------------------------------*/
    /* Find FITS header line containing specified keyword */
    
    static char *ksearch (hstring,keyword)
    
    /* Find entry for keyword keyword in FITS header string hstring.
       (the keyword may have a maximum of eight letters)
       NULL is returned if the keyword is not found */
    
    char *hstring;	/* character string containing fits-style header
    		information in the format =  {/ }
    		the default is that each entry is 80 characters long;
    		however, lines may be of arbitrary length terminated by
    		nulls, carriage returns or linefeeds, if packed is true.  */
    char *keyword;	/* character string containing the name of the variable
    		to be returned.  ksearch searches for a line beginning
    		with this string.  The string may be a character
    		literal or a character variable terminated by a null
    		or '$'.  it is truncated to 8 characters. */
    {
        char *loc, *headnext, *headlast, *pval, *lc, *line;
        int icol, nextchar, lkey, nleft, lhstr;
    
        pval = 0;
    
    /* Search header string for variable name */
        if (lhead0)
    	lhstr = lhead0;
        else {
    	lhstr = 0;
    	while (lhstr < 57600 && hstring[lhstr] != 0)
    	    lhstr++;
    	}
        headlast = hstring + lhstr;
        headnext = hstring;
        pval = NULL;
        while (headnext < headlast) {
    	nleft = headlast - headnext;
    	loc = strnsrch (headnext, keyword, nleft);
    
    	/* Exit if keyword is not found */
    	if (loc == NULL) {
    	    break;
    	    }
    
    	icol = (loc - hstring) % 80;
    	lkey = strlen (keyword);
    	nextchar = (int) *(loc + lkey);
    
    	/* If this is not in the first 8 characters of a line, keep searching */
    	if (icol > 7)
    	    headnext = loc + 1;
    
    	/* If parameter name in header is longer, keep searching */
    	else if (nextchar != 61 && nextchar > 32 && nextchar < 127)
    	    headnext = loc + 1;
    
    	/* If preceeding characters in line are not blanks, keep searching */
    	else {
    	    line = loc - icol;
    	    for (lc = line; lc < loc; lc++) {
    		if (*lc != ' ')
    		    headnext = loc + 1;
    		}
    
    	/* Return pointer to start of line if match */
    	    if (loc >= headnext) {
    		pval = line;
    		break;
    		}
    	    }
    	}
    
    /* Return pointer to calling program */
    	return (pval);
    
    }
    
    /*-------------------------------------------------------------------*/
    /* Find string s2 within null-terminated string s1 */
    
    static char *
    strsrch (s1, s2)
    
    char *s1;	/* String to search */
    char *s2;	/* String to look for */
    
    {
        int ls1;
        ls1 = strlen (s1);
        return (strnsrch (s1, s2, ls1));
    }
    
    /*-------------------------------------------------------------------*/
    /* Find string s2 within string s1 */
    
    static char *
    strnsrch (s1, s2, ls1)
    
    char	*s1;	/* String to search */
    char	*s2;	/* String to look for */
    int	ls1;	/* Length of string being searched */
    
    {
        char *s,*s1e;
        char cfirst,clast;
        int i,ls2;
    
        /* Return null string if either pointer is NULL */
        if (s1 == NULL || s2 == NULL)
    	return (NULL);
    
        /* A zero-length pattern is found in any string */
        ls2 = strlen (s2);
        if (ls2 ==0)
    	return (s1);
    
        /* Only a zero-length string can be found in a zero-length string */
        if (ls1 ==0)
    	return (NULL);
    
        cfirst = s2[0];
        clast = s2[ls2-1];
        s1e = s1 + ls1 - ls2 + 1;
        s = s1;
        while (s < s1e) { 
    
    	/* Search for first character in pattern string */
    	if (*s == cfirst) {
    
    	    /* If single character search, return */
    	    if (ls2 == 1)
    		return (s);
    
    	    /* Search for last character in pattern string if first found */
    	    if (s[ls2-1] == clast) {
    
    		/* If two-character search, return */
    		if (ls2 == 2)
    		    return (s);
    
    		/* If 3 or more characters, check for rest of search string */
    		i = 1;
    		while (i < ls2 && s[i] == s2[i])
    		    i++;
    
    		/* If entire string matches, return */
    		if (i >= ls2)
    		    return (s);
    		}
    	    }
    	s++;
    	}
        return (NULL);
    }
    
    /*-------------------------------------------------------------------*/
    /*             the following routines were originally in hget.c      */
    /*-------------------------------------------------------------------*/
    /*  HPUTI4 - Set int keyword = ival in FITS header string */
    
    static void
    hputi4 (hstring,keyword,ival)
    
      char *hstring;	/* character string containing FITS-style header
    			   information in the format
    			   =  {/ }
    			   each entry is padded with spaces to 80 characters */
    
      char *keyword;		/* character string containing the name of the variable
    			   to be returned.  hput searches for a line beginning
    			   with this string, and if there isn't one, creates one.
    		   	   The first 8 characters of keyword must be unique. */
      int ival;		/* int number */
    {
        char value[30];
    
        /* Translate value from binary to ASCII */
        sprintf (value,"%d",ival);
    
        /* Put value into header string */
        hputc (hstring,keyword,value);
    
        /* Return to calling program */
        return;
    }
    
    /*-------------------------------------------------------------------*/
    
    /*  HPUTL - Set keyword = F if lval=0, else T, in FITS header string */
    
    static void
    hputl (hstring, keyword,lval)
    
    char *hstring;		/* FITS header */
    char *keyword;		/* Keyword name */
    int lval;		/* logical variable (0=false, else true) */
    {
        char value[8];
    
        /* Translate value from binary to ASCII */
        if (lval)
    	strcpy (value, "T");
        else
    	strcpy (value, "F");
    
        /* Put value into header string */
        hputc (hstring,keyword,value);
    
        /* Return to calling program */
        return;
    }
    
    /*-------------------------------------------------------------------*/
    
    /*  HPUTS - Set character string keyword = 'cval' in FITS header string */
    
    static void
    hputs (hstring,keyword,cval)
    
    char *hstring;	/* FITS header */
    char *keyword;	/* Keyword name */
    char *cval;	/* character string containing the value for variable
    		   keyword.  trailing and leading blanks are removed.  */
    {
        char squot = 39;
        char value[70];
        int lcval;
    
        /*  find length of variable string */
    
        lcval = strlen (cval);
        if (lcval > 67)
    	lcval = 67;
    
        /* Put quotes around string */
        value[0] = squot;
        strncpy (&value[1],cval,lcval);
        value[lcval+1] = squot;
        value[lcval+2] = 0;
    
        /* Put value into header string */
        hputc (hstring,keyword,value);
    
        /* Return to calling program */
        return;
    }
    
    /*---------------------------------------------------------------------*/
    /*  HPUTC - Set character string keyword = value in FITS header string */
    
    static void
    hputc (hstring,keyword,value)
    
    char *hstring;
    char *keyword;
    char *value;	/* character string containing the value for variable
    		   keyword.  trailing and leading blanks are removed.  */
    {
        char squot = 39;
        char line[100];
        char newcom[50];
        char blank[80];
        char *v, *vp, *v1, *v2, *q1, *q2, *c1, *ve;
        int lkeyword, lcom, lval, lc, i;
    
        for (i = 0; i < 80; i++)
    	blank[i] = ' ';
    
        /*  find length of keyword and value */
        lkeyword = strlen (keyword);
        lval = strlen (value);
    
        /*  If COMMENT or HISTORY, always add it just before the END */
        if (lkeyword == 7 && (strncmp (keyword,"COMMENT",7) == 0 ||
    	strncmp (keyword,"HISTORY",7) == 0)) {
    
    	/* Find end of header */
    	v1 = ksearch (hstring,"END");
    	v2 = v1 + 80;
    
    	/* Move END down one line */
    	strncpy (v2, v1, 80);
    
    	/* Insert keyword */
    	strncpy (v1,keyword,7);
    
    	/* Pad with spaces */
    	for (vp = v1+lkeyword; vp < v2; vp++)
    	    *vp = ' ';
    
    	/* Insert comment */
    	strncpy (v1+9,value,lval);
    	return;
    	}
    
        /* Otherwise search for keyword */
        else
    	v1 = ksearch (hstring,keyword);
    
        /*  If parameter is not found, find a place to put it */
        if (v1 == NULL) {
    	
    	/* First look for blank lines before END */
            v1 = blsearch (hstring, "END");
        
    	/*  Otherwise, create a space for it at the end of the header */
    	if (v1 == NULL) {
    	    ve = ksearch (hstring,"END");
    	    v1 = ve;
    	    v2 = v1 + 80;
    	    strncpy (v2, ve, 80);
    	    }
    	else
    	    v2 = v1 + 80;
    	lcom = 0;
    	newcom[0] = 0;
    	}
    
        /*  Otherwise, extract the entry for this keyword from the header */
        else {
    	strncpy (line, v1, 80);
    	line[80] = 0;
    	v2 = v1 + 80;
    
    	/*  check for quoted value */
    	q1 = strchr (line, squot);
    	if (q1 != NULL)
    	    q2 = strchr (q1+1,squot);
    	else
    	    q2 = line;
    
    	/*  extract comment and remove trailing spaces */
    
    	c1 = strchr (q2,'/');
    	if (c1 != NULL) {
    	    lcom = 80 - (c1 - line);
    	    strncpy (newcom, c1+1, lcom);
    	    vp = newcom + lcom - 1;
    	    while (vp-- > newcom && *vp == ' ')
    		*vp = 0;
    	    lcom = strlen (newcom);
    	    }
    	else {
    	    newcom[0] = 0;
    	    lcom = 0;
    	    }
    	}
    
        /* Fill new entry with spaces */
        for (vp = v1; vp < v2; vp++)
    	*vp = ' ';
    
        /*  Copy keyword to new entry */
        strncpy (v1, keyword, lkeyword);
    
        /*  Add parameter value in the appropriate place */
        vp = v1 + 8;
        *vp = '=';
        vp = v1 + 9;
        *vp = ' ';
        vp = vp + 1;
        if (*value == squot) {
    	strncpy (vp, value, lval);
    	if (lval+12 > 31)
    	    lc = lval + 12;
    	else
    	    lc = 30;
    	}
        else {
    	vp = v1 + 30 - lval;
    	strncpy (vp, value, lval);
    	lc = 30;
    	}
    
        /* Add comment in the appropriate place */
    	if (lcom > 0) {
    	    if (lc+2+lcom > 80)
    		lcom = 78 - lc;
    	    vp = v1 + lc + 2;     /* Jul 16 1997: was vp = v1 + lc * 2 */
    	    *vp = '/';
    	    vp = vp + 1;
    	    strncpy (vp, newcom, lcom);
    	    for (v = vp + lcom; v < v2; v++)
    		*v = ' ';
    	    }
    
    	return;
    }
    
    /*-------------------------------------------------------------------*/
    /*  HPUTCOM - Set comment for keyword or on line in FITS header string */
    
    static void
    hputcom (hstring,keyword,comment)
    
      char *hstring;
      char *keyword;
      char *comment;
    {
    	char squot;
    	char line[100];
    	int lkeyword, lcom;
    	char *vp, *v1, *v2, *c0 = NULL, *c1, *q1, *q2;
    
    	squot = 39;
    
    /*  Find length of variable name */
    	lkeyword = strlen (keyword);
    
    /*  If COMMENT or HISTORY, always add it just before the END */
    	if (lkeyword == 7 && (strncmp (keyword,"COMMENT",7) == 0 ||
    	    strncmp (keyword,"HISTORY",7) == 0)) {
    
    	/* Find end of header */
    	    v1 = ksearch (hstring,"END");
    	    v2 = v1 + 80;
    	    strncpy (v2, v1, 80);
    
    	/*  blank out new line and insert keyword */
    	    for (vp = v1; vp < v2; vp++)
    		*vp = ' ';
    	    strncpy (v1, keyword, lkeyword);
    	    }
    
    /* search header string for variable name */
    	else {
    	    v1 = ksearch (hstring,keyword);
    	    v2 = v1 + 80;
    
    	/* if parameter is not found, return without doing anything */
    	    if (v1 == NULL) {
    		return;
    		}
    
    	/* otherwise, extract entry for this variable from the header */
    	    strncpy (line, v1, 80);
    
    	/* check for quoted value */
    	    q1 = strchr (line,squot);
    	    if (q1 != NULL)
    		q2 = strchr (q1+1,squot);
    	    else
    		q2 = NULL;
    
    	    if (q2 == NULL || q2-line < 31)
    		c0 = v1 + 31;
    	    else
    		c0 = v1 + (q2-line) + 2; /* allan: 1997-09-30, was c0=q2+2 */
    
    	    strncpy (c0, "/ ",2);
    	    }
    
    /* create new entry */
    	lcom = strlen (comment);
    
    	if (lcom > 0) {
    	    c1 = c0 + 2;
    	    if (c1+lcom > v2)
    		lcom = v2 - c1;
    	    strncpy (c1, comment, lcom);
    	    }
    
    }
    healpy-1.8.1/cfitsio/wcssub.c0000654000175000017530000010470312272000775016534 0ustar  zoncaplanck00000000000000#include 
    #include 
    #include 
    #include "fitsio2.h"
    
    /*--------------------------------------------------------------------------*/
    int fits_read_wcstab(
       fitsfile   *fptr, /* I - FITS file pointer           */
       int  nwtb,        /* Number of arrays to be read from the binary table(s) */
       wtbarr *wtb,      /* Address of the first element of an array of wtbarr
                             typedefs.  This wtbarr typedef is defined below to
                             match the wtbarr struct defined in WCSLIB.  An array
                             of such structs returned by the WCSLIB function
                             wcstab(). */
       int  *status)
    
    /*
    *   Author: Mark Calabretta, Australia Telescope National Facility
    *   http://www.atnf.csiro.au/~mcalabre/index.html
    *
    *   fits_read_wcstab() extracts arrays from a binary table required in
    *   constructing -TAB coordinates.  This helper routine is intended for
    *   use by routines in the WCSLIB library when dealing with the -TAB table
    *   look up WCS convention.
    */
    
    {
       int  anynul, colnum, hdunum, iwtb, m, naxis, nostat;
       long *naxes = 0, nelem;
       wtbarr *wtbp;
    
    
       if (*status) return *status;
    
       if (fptr == 0) {
          return (*status = NULL_INPUT_PTR);
       }
    
       if (nwtb == 0) return 0;
    
       /* Zero the array pointers. */
       wtbp = wtb;
       for (iwtb = 0; iwtb < nwtb; iwtb++, wtbp++) {
         *wtbp->arrayp = 0x0;
       }
    
       /* Save HDU number so that we can move back to it later. */
       fits_get_hdu_num(fptr, &hdunum);
    
       wtbp = wtb;
       for (iwtb = 0; iwtb < nwtb; iwtb++, wtbp++) {
          /* Move to the required binary table extension. */
          if (fits_movnam_hdu(fptr, BINARY_TBL, (char *)(wtbp->extnam),
              wtbp->extver, status)) {
             goto cleanup;
          }
    
          /* Locate the table column. */
          if (fits_get_colnum(fptr, CASEINSEN, (char *)(wtbp->ttype), &colnum,
              status)) {
             goto cleanup;
          }
    
          /* Get the array dimensions and check for consistency. */
          if (wtbp->ndim < 1) {
             *status = NEG_AXIS;
             goto cleanup;
          }
    
          if (!(naxes = calloc(wtbp->ndim, sizeof(long)))) {
             *status = MEMORY_ALLOCATION;
             goto cleanup;
          }
    
          if (fits_read_tdim(fptr, colnum, wtbp->ndim, &naxis, naxes, status)) {
             goto cleanup;
          }
    
          if (naxis != wtbp->ndim) {
             if (wtbp->kind == 'c' && wtbp->ndim == 2) {
                /* Allow TDIMn to be omitted for degenerate coordinate arrays. */
                naxis = 2;
                naxes[1] = naxes[0];
                naxes[0] = 1;
             } else {
                *status = BAD_TDIM;
                goto cleanup;
             }
          }
    
          if (wtbp->kind == 'c') {
             /* Coordinate array; calculate the array size. */
             nelem = naxes[0];
             for (m = 0; m < naxis-1; m++) {
                *(wtbp->dimlen + m) = naxes[m+1];
                nelem *= naxes[m+1];
             }
          } else {
             /* Index vector; check length. */
             if ((nelem = naxes[0]) != *(wtbp->dimlen)) {
                /* N.B. coordinate array precedes the index vectors. */
                *status = BAD_TDIM;
                goto cleanup;
             }
          }
    
          free(naxes);
          naxes = 0;
    
          /* Allocate memory for the array. */
          if (!(*wtbp->arrayp = calloc((size_t)nelem, sizeof(double)))) {
             *status = MEMORY_ALLOCATION;
             goto cleanup;
          }
    
          /* Read the array from the table. */
          if (fits_read_col_dbl(fptr, colnum, wtbp->row, 1L, nelem, 0.0,
              *wtbp->arrayp, &anynul, status)) {
             goto cleanup;
          }
       }
    
    cleanup:
       /* Move back to the starting HDU. */
       nostat = 0;
       fits_movabs_hdu(fptr, hdunum, 0, &nostat);
    
       /* Release allocated memory. */
       if (naxes) free(naxes);
       if (*status) {
          wtbp = wtb;
          for (iwtb = 0; iwtb < nwtb; iwtb++, wtbp++) {
             if (*wtbp->arrayp) free(*wtbp->arrayp);
          }
       }
    
       return *status;
    }
    /*--------------------------------------------------------------------------*/
    int ffgiwcs(fitsfile *fptr,  /* I - FITS file pointer                    */
               char **header,   /* O - pointer to the WCS related keywords  */
               int *status)     /* IO - error status                        */
    /*
      int fits_get_image_wcs_keys 
      return a string containing all the image WCS header keywords.
      This string is then used as input to the wcsinit WCSlib routine.
      
      THIS ROUTINE IS DEPRECATED. USE fits_hdr2str INSTEAD
    */
    {
        int hdutype;
    
        if (*status > 0)
            return(*status);
    
        fits_get_hdu_type(fptr, &hdutype, status);
        if (hdutype != IMAGE_HDU)
        {
          ffpmsg(
         "Error in ffgiwcs. This HDU is not an image. Can't read WCS keywords");
          return(*status = NOT_IMAGE);
        }
    
        /* read header keywords into a long string of chars */
        if (ffh2st(fptr, header, status) > 0)
        {
            ffpmsg("error creating string of image WCS keywords (ffgiwcs)");
            return(*status);
        }
    
        return(*status);
    }
    
    /*--------------------------------------------------------------------------*/
    int ffgics(fitsfile *fptr,    /* I - FITS file pointer           */
               double *xrval,     /* O - X reference value           */
               double *yrval,     /* O - Y reference value           */
               double *xrpix,     /* O - X reference pixel           */
               double *yrpix,     /* O - Y reference pixel           */
               double *xinc,      /* O - X increment per pixel       */
               double *yinc,      /* O - Y increment per pixel       */
               double *rot,       /* O - rotation angle (degrees)    */
               char *type,        /* O - type of projection ('-tan') */
               int *status)       /* IO - error status               */
    /*
           read the values of the celestial coordinate system keywords.
           These values may be used as input to the subroutines that
           calculate celestial coordinates. (ffxypx, ffwldp)
    
           Modified in Nov 1999 to convert the CD matrix keywords back
           to the old CDELTn form, and to swap the axes if the dec-like
           axis is given first, and to assume default values if any of the
           keywords are not present.
    */
    {
        int tstat = 0, cd_exists = 0, pc_exists = 0;
        char ctype[FLEN_VALUE];
        double cd11 = 0.0, cd21 = 0.0, cd22 = 0.0, cd12 = 0.0;
        double pc11 = 1.0, pc21 = 0.0, pc22 = 1.0, pc12 = 0.0;
        double pi =  3.1415926535897932;
        double phia, phib, temp;
        double toler = .0002;  /* tolerance for angles to agree (radians) */
                               /*   (= approximately 0.01 degrees) */
    
        if (*status > 0)
           return(*status);
    
        tstat = 0;
        if (ffgkyd(fptr, "CRVAL1", xrval, NULL, &tstat))
           *xrval = 0.;
    
        tstat = 0;
        if (ffgkyd(fptr, "CRVAL2", yrval, NULL, &tstat))
           *yrval = 0.;
    
        tstat = 0;
        if (ffgkyd(fptr, "CRPIX1", xrpix, NULL, &tstat))
            *xrpix = 0.;
    
        tstat = 0;
        if (ffgkyd(fptr, "CRPIX2", yrpix, NULL, &tstat))
            *yrpix = 0.;
    
        /* look for CDELTn first, then CDi_j keywords */
        tstat = 0;
        if (ffgkyd(fptr, "CDELT1", xinc, NULL, &tstat))
        {
            /* CASE 1: no CDELTn keyword, so look for the CD matrix */
            tstat = 0;
            if (ffgkyd(fptr, "CD1_1", &cd11, NULL, &tstat))
                tstat = 0;  /* reset keyword not found error */
            else
                cd_exists = 1;  /* found at least 1 CD_ keyword */
    
            if (ffgkyd(fptr, "CD2_1", &cd21, NULL, &tstat))
                tstat = 0;  /* reset keyword not found error */
            else
                cd_exists = 1;  /* found at least 1 CD_ keyword */
    
            if (ffgkyd(fptr, "CD1_2", &cd12, NULL, &tstat))
                tstat = 0;  /* reset keyword not found error */
            else
                cd_exists = 1;  /* found at least 1 CD_ keyword */
    
            if (ffgkyd(fptr, "CD2_2", &cd22, NULL, &tstat))
                tstat = 0;  /* reset keyword not found error */
            else
                cd_exists = 1;  /* found at least 1 CD_ keyword */
    
            if (cd_exists)  /* convert CDi_j back to CDELTn */
            {
                /* there are 2 ways to compute the angle: */
                phia = atan2( cd21, cd11);
                phib = atan2(-cd12, cd22);
    
                /* ensure that phia <= phib */
                temp = minvalue(phia, phib);
                phib = maxvalue(phia, phib);
                phia = temp;
    
                /* there is a possible 180 degree ambiguity in the angles */
                /* so add 180 degress to the smaller value if the values  */
                /* differ by more than 90 degrees = pi/2 radians.         */
                /* (Later, we may decide to take the other solution by    */
                /* subtracting 180 degrees from the larger value).        */
    
                if ((phib - phia) > (pi / 2.))
                   phia += pi;
    
                if (fabs(phia - phib) > toler) 
                {
                   /* angles don't agree, so looks like there is some skewness */
                   /* between the axes.  Return with an error to be safe. */
                   *status = APPROX_WCS_KEY;
                }
          
                phia = (phia + phib) /2.;  /* use the average of the 2 values */
                *xinc = cd11 / cos(phia);
                *yinc = cd22 / cos(phia);
                *rot = phia * 180. / pi;
    
                /* common usage is to have a positive yinc value.  If it is */
                /* negative, then subtract 180 degrees from rot and negate  */
                /* both xinc and yinc.  */
    
                if (*yinc < 0)
                {
                    *xinc = -(*xinc);
                    *yinc = -(*yinc);
                    *rot = *rot - 180.;
                }
            }
            else   /* no CD matrix keywords either */
            {
                *xinc = 1.;
    
                /* there was no CDELT1 keyword, but check for CDELT2 just in case */
                tstat = 0;
                if (ffgkyd(fptr, "CDELT2", yinc, NULL, &tstat))
                    *yinc = 1.;
    
                tstat = 0;
                if (ffgkyd(fptr, "CROTA2", rot, NULL, &tstat))
                    *rot=0.;
            }
        }
        else  /* Case 2: CDELTn + optional PC matrix */
        {
            if (ffgkyd(fptr, "CDELT2", yinc, NULL, &tstat))
                *yinc = 1.;
    
            tstat = 0;
            if (ffgkyd(fptr, "CROTA2", rot, NULL, &tstat))
            {
                *rot=0.;
    
                /* no CROTA2 keyword, so look for the PC matrix */
                tstat = 0;
                if (ffgkyd(fptr, "PC1_1", &pc11, NULL, &tstat))
                    tstat = 0;  /* reset keyword not found error */
                else
                    pc_exists = 1;  /* found at least 1 PC_ keyword */
    
                if (ffgkyd(fptr, "PC2_1", &pc21, NULL, &tstat))
                    tstat = 0;  /* reset keyword not found error */
                else
                    pc_exists = 1;  /* found at least 1 PC_ keyword */
    
                if (ffgkyd(fptr, "PC1_2", &pc12, NULL, &tstat))
                    tstat = 0;  /* reset keyword not found error */
                else
                    pc_exists = 1;  /* found at least 1 PC_ keyword */
    
                if (ffgkyd(fptr, "PC2_2", &pc22, NULL, &tstat))
                    tstat = 0;  /* reset keyword not found error */
                else
                    pc_exists = 1;  /* found at least 1 PC_ keyword */
    
                if (pc_exists)  /* convert PCi_j back to CDELTn */
                {
                    /* there are 2 ways to compute the angle: */
                    phia = atan2( pc21, pc11);
                    phib = atan2(-pc12, pc22);
    
                    /* ensure that phia <= phib */
                    temp = minvalue(phia, phib);
                    phib = maxvalue(phia, phib);
                    phia = temp;
    
                    /* there is a possible 180 degree ambiguity in the angles */
                    /* so add 180 degress to the smaller value if the values  */
                    /* differ by more than 90 degrees = pi/2 radians.         */
                    /* (Later, we may decide to take the other solution by    */
                    /* subtracting 180 degrees from the larger value).        */
    
                    if ((phib - phia) > (pi / 2.))
                       phia += pi;
    
                    if (fabs(phia - phib) > toler) 
                    {
                      /* angles don't agree, so looks like there is some skewness */
                      /* between the axes.  Return with an error to be safe. */
                      *status = APPROX_WCS_KEY;
                    }
          
                    phia = (phia + phib) /2.;  /* use the average of the 2 values */
                    *rot = phia * 180. / pi;
                }
            }
        }
    
        /* get the type of projection, if any */
        tstat = 0;
        if (ffgkys(fptr, "CTYPE1", ctype, NULL, &tstat))
             type[0] = '\0';
        else
        {
            /* copy the projection type string */
            strncpy(type, &ctype[4], 4);
            type[4] = '\0';
    
            /* check if RA and DEC are inverted */
            if (!strncmp(ctype, "DEC-", 4) || !strncmp(ctype+1, "LAT", 3))
            {
                /* the latitudinal axis is given first, so swap them */
    
    /*
     this case was removed on 12/9.  Apparently not correct.
    
                if ((*xinc / *yinc) < 0. )  
                    *rot = -90. - (*rot);
                else
    */
                *rot = 90. - (*rot);
    
                /* Empirical tests with ds9 show the y-axis sign must be negated */
                /* and the xinc and yinc values must NOT be swapped. */
                *yinc = -(*yinc);
    
                temp = *xrval;
                *xrval = *yrval;
                *yrval = temp;
            }   
        }
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgicsa(fitsfile *fptr,    /* I - FITS file pointer           */
               char version,      /* I - character code of desired version */
    	                      /*     A - Z or blank */
               double *xrval,     /* O - X reference value           */
               double *yrval,     /* O - Y reference value           */
               double *xrpix,     /* O - X reference pixel           */
               double *yrpix,     /* O - Y reference pixel           */
               double *xinc,      /* O - X increment per pixel       */
               double *yinc,      /* O - Y increment per pixel       */
               double *rot,       /* O - rotation angle (degrees)    */
               char *type,        /* O - type of projection ('-tan') */
               int *status)       /* IO - error status               */
    /*
           read the values of the celestial coordinate system keywords.
           These values may be used as input to the subroutines that
           calculate celestial coordinates. (ffxypx, ffwldp)
    
           Modified in Nov 1999 to convert the CD matrix keywords back
           to the old CDELTn form, and to swap the axes if the dec-like
           axis is given first, and to assume default values if any of the
           keywords are not present.
    */
    {
        int tstat = 0, cd_exists = 0, pc_exists = 0;
        char ctype[FLEN_VALUE], keyname[FLEN_VALUE], alt[2];
        double cd11 = 0.0, cd21 = 0.0, cd22 = 0.0, cd12 = 0.0;
        double pc11 = 1.0, pc21 = 0.0, pc22 = 1.0, pc12 = 0.0;
        double pi =  3.1415926535897932;
        double phia, phib, temp;
        double toler = .0002;  /* tolerance for angles to agree (radians) */
                               /*   (= approximately 0.01 degrees) */
    
        if (*status > 0)
           return(*status);
    
        if (version == ' ') {
          ffgics(fptr, xrval, yrval, xrpix, yrpix, xinc, yinc, rot, type, status);
          return (*status);
        }
    
        if (version > 'Z' || version < 'A') {
          ffpmsg("ffgicsa: illegal WCS version code (must be A - Z or blank)");
          return(*status = WCS_ERROR);
        }
    
        alt[0] = version;
        alt[1] = '\0';
        
        tstat = 0;
        strcpy(keyname, "CRVAL1");
        strcat(keyname, alt);
        if (ffgkyd(fptr, keyname, xrval, NULL, &tstat))
           *xrval = 0.;
    
        tstat = 0;
        strcpy(keyname, "CRVAL2");
        strcat(keyname, alt);
        if (ffgkyd(fptr, keyname, yrval, NULL, &tstat))
           *yrval = 0.;
    
        tstat = 0;
        strcpy(keyname, "CRPIX1");
        strcat(keyname, alt);
        if (ffgkyd(fptr, keyname, xrpix, NULL, &tstat))
            *xrpix = 0.;
    
        tstat = 0;
        strcpy(keyname, "CRPIX2");
        strcat(keyname, alt);
         if (ffgkyd(fptr, keyname, yrpix, NULL, &tstat))
            *yrpix = 0.;
    
        /* look for CDELTn first, then CDi_j keywords */
        tstat = 0;
        strcpy(keyname, "CDELT1");
        strcat(keyname, alt);
        if (ffgkyd(fptr, keyname, xinc, NULL, &tstat))
        {
            /* CASE 1: no CDELTn keyword, so look for the CD matrix */
            tstat = 0;
            strcpy(keyname, "CD1_1");
            strcat(keyname, alt);
            if (ffgkyd(fptr, keyname, &cd11, NULL, &tstat))
                tstat = 0;  /* reset keyword not found error */
            else
                cd_exists = 1;  /* found at least 1 CD_ keyword */
    
            strcpy(keyname, "CD2_1");
            strcat(keyname, alt);
            if (ffgkyd(fptr, keyname, &cd21, NULL, &tstat))
                tstat = 0;  /* reset keyword not found error */
            else
                cd_exists = 1;  /* found at least 1 CD_ keyword */
    
            strcpy(keyname, "CD1_2");
            strcat(keyname, alt);
            if (ffgkyd(fptr, keyname, &cd12, NULL, &tstat))
                tstat = 0;  /* reset keyword not found error */
            else
                cd_exists = 1;  /* found at least 1 CD_ keyword */
    
            strcpy(keyname, "CD2_2");
            strcat(keyname, alt);
            if (ffgkyd(fptr, keyname, &cd22, NULL, &tstat))
                tstat = 0;  /* reset keyword not found error */
            else
                cd_exists = 1;  /* found at least 1 CD_ keyword */
    
            if (cd_exists)  /* convert CDi_j back to CDELTn */
            {
                /* there are 2 ways to compute the angle: */
                phia = atan2( cd21, cd11);
                phib = atan2(-cd12, cd22);
    
                /* ensure that phia <= phib */
                temp = minvalue(phia, phib);
                phib = maxvalue(phia, phib);
                phia = temp;
    
                /* there is a possible 180 degree ambiguity in the angles */
                /* so add 180 degress to the smaller value if the values  */
                /* differ by more than 90 degrees = pi/2 radians.         */
                /* (Later, we may decide to take the other solution by    */
                /* subtracting 180 degrees from the larger value).        */
    
                if ((phib - phia) > (pi / 2.))
                   phia += pi;
    
                if (fabs(phia - phib) > toler) 
                {
                   /* angles don't agree, so looks like there is some skewness */
                   /* between the axes.  Return with an error to be safe. */
                   *status = APPROX_WCS_KEY;
                }
          
                phia = (phia + phib) /2.;  /* use the average of the 2 values */
                *xinc = cd11 / cos(phia);
                *yinc = cd22 / cos(phia);
                *rot = phia * 180. / pi;
    
                /* common usage is to have a positive yinc value.  If it is */
                /* negative, then subtract 180 degrees from rot and negate  */
                /* both xinc and yinc.  */
    
                if (*yinc < 0)
                {
                    *xinc = -(*xinc);
                    *yinc = -(*yinc);
                    *rot = *rot - 180.;
                }
            }
            else   /* no CD matrix keywords either */
            {
                *xinc = 1.;
    
                /* there was no CDELT1 keyword, but check for CDELT2 just in case */
                tstat = 0;
                strcpy(keyname, "CDELT2");
                strcat(keyname, alt);
                if (ffgkyd(fptr, keyname, yinc, NULL, &tstat))
                    *yinc = 1.;
    
                tstat = 0;
                strcpy(keyname, "CROTA2");
                strcat(keyname, alt);
                if (ffgkyd(fptr, keyname, rot, NULL, &tstat))
                    *rot=0.;
            }
        }
        else  /* Case 2: CDELTn + optional PC matrix */
        {
            strcpy(keyname, "CDELT2");
            strcat(keyname, alt);
            if (ffgkyd(fptr, keyname, yinc, NULL, &tstat))
                *yinc = 1.;
    
            tstat = 0;
            strcpy(keyname, "CROTA2");
            strcat(keyname, alt);
            if (ffgkyd(fptr, keyname, rot, NULL, &tstat))
            {
                *rot=0.;
    
                /* no CROTA2 keyword, so look for the PC matrix */
                tstat = 0;
                strcpy(keyname, "PC1_1");
                strcat(keyname, alt);
                if (ffgkyd(fptr, keyname, &pc11, NULL, &tstat))
                    tstat = 0;  /* reset keyword not found error */
                else
                    pc_exists = 1;  /* found at least 1 PC_ keyword */
    
                strcpy(keyname, "PC2_1");
                strcat(keyname, alt);
                if (ffgkyd(fptr, keyname, &pc21, NULL, &tstat))
                    tstat = 0;  /* reset keyword not found error */
                else
                    pc_exists = 1;  /* found at least 1 PC_ keyword */
    
                strcpy(keyname, "PC1_2");
                strcat(keyname, alt);
                if (ffgkyd(fptr, keyname, &pc12, NULL, &tstat))
                    tstat = 0;  /* reset keyword not found error */
                else
                    pc_exists = 1;  /* found at least 1 PC_ keyword */
    
                strcpy(keyname, "PC2_2");
                strcat(keyname, alt);
                if (ffgkyd(fptr, keyname, &pc22, NULL, &tstat))
                    tstat = 0;  /* reset keyword not found error */
                else
                    pc_exists = 1;  /* found at least 1 PC_ keyword */
    
                if (pc_exists)  /* convert PCi_j back to CDELTn */
                {
                    /* there are 2 ways to compute the angle: */
                    phia = atan2( pc21, pc11);
                    phib = atan2(-pc12, pc22);
    
                    /* ensure that phia <= phib */
                    temp = minvalue(phia, phib);
                    phib = maxvalue(phia, phib);
                    phia = temp;
    
                    /* there is a possible 180 degree ambiguity in the angles */
                    /* so add 180 degress to the smaller value if the values  */
                    /* differ by more than 90 degrees = pi/2 radians.         */
                    /* (Later, we may decide to take the other solution by    */
                    /* subtracting 180 degrees from the larger value).        */
    
                    if ((phib - phia) > (pi / 2.))
                       phia += pi;
    
                    if (fabs(phia - phib) > toler) 
                    {
                      /* angles don't agree, so looks like there is some skewness */
                      /* between the axes.  Return with an error to be safe. */
                      *status = APPROX_WCS_KEY;
                    }
          
                    phia = (phia + phib) /2.;  /* use the average of the 2 values */
                    *rot = phia * 180. / pi;
                }
            }
        }
    
        /* get the type of projection, if any */
        tstat = 0;
        strcpy(keyname, "CTYPE1");
        strcat(keyname, alt);
        if (ffgkys(fptr, keyname, ctype, NULL, &tstat))
             type[0] = '\0';
        else
        {
            /* copy the projection type string */
            strncpy(type, &ctype[4], 4);
            type[4] = '\0';
    
            /* check if RA and DEC are inverted */
            if (!strncmp(ctype, "DEC-", 4) || !strncmp(ctype+1, "LAT", 3))
            {
                /* the latitudinal axis is given first, so swap them */
    
                *rot = 90. - (*rot);
    
                /* Empirical tests with ds9 show the y-axis sign must be negated */
                /* and the xinc and yinc values must NOT be swapped. */
                *yinc = -(*yinc);
    
                temp = *xrval;
                *xrval = *yrval;
                *yrval = temp;
            }   
        }
    
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgtcs(fitsfile *fptr,    /* I - FITS file pointer           */
               int xcol,          /* I - column containing the RA coordinate  */
               int ycol,          /* I - column containing the DEC coordinate */
               double *xrval,     /* O - X reference value           */
               double *yrval,     /* O - Y reference value           */
               double *xrpix,     /* O - X reference pixel           */
               double *yrpix,     /* O - Y reference pixel           */
               double *xinc,      /* O - X increment per pixel       */
               double *yinc,      /* O - Y increment per pixel       */
               double *rot,       /* O - rotation angle (degrees)    */
               char *type,        /* O - type of projection ('-sin') */
               int *status)       /* IO - error status               */
    /*
           read the values of the celestial coordinate system keywords
           from a FITS table where the X and Y or RA and DEC coordinates
           are stored in separate column.  Do this by converting the
           table to a temporary FITS image, then reading the keywords
           from the image file.
           These values may be used as input to the subroutines that
           calculate celestial coordinates. (ffxypx, ffwldp)
    */
    {
        int colnum[2];
        long naxes[2];
        fitsfile *tptr;
    
        if (*status > 0)
           return(*status);
    
        colnum[0] = xcol;
        colnum[1] = ycol;
        naxes[0] = 10;
        naxes[1] = 10;
    
        /* create temporary  FITS file, in memory */
        ffinit(&tptr, "mem://", status);
        
        /* create a temporary image; the datatype and size are not important */
        ffcrim(tptr, 32, 2, naxes, status);
        
        /* now copy the relevant keywords from the table to the image */
        fits_copy_pixlist2image(fptr, tptr, 9, 2, colnum, status);
    
        /* write default WCS keywords, if they are not present */
        fits_write_keys_histo(fptr, tptr, 2, colnum, status);
    
        if (*status > 0)
           return(*status);
             
        /* read the WCS keyword values from the temporary image */
        ffgics(tptr, xrval, yrval, xrpix, yrpix, xinc, yinc, rot, type, status); 
    
        if (*status > 0)
        {
          ffpmsg
          ("ffgtcs could not find all the celestial coordinate keywords");
          return(*status = NO_WCS_KEY); 
        }
    
        /* delete the temporary file */
        fits_delete_file(tptr, status);
        
        return(*status);
    }
    /*--------------------------------------------------------------------------*/
    int ffgtwcs(fitsfile *fptr,  /* I - FITS file pointer              */
               int xcol,        /* I - column number for the X column  */
               int ycol,        /* I - column number for the Y column  */
               char **header,   /* O - string of all the WCS keywords  */
               int *status)     /* IO - error status                   */
    /*
      int fits_get_table_wcs_keys
      Return string containing all the WCS keywords appropriate for the 
      pair of X and Y columns containing the coordinate
      of each event in an event list table.  This string may then be passed
      to Doug Mink's WCS library wcsinit routine, to create and initialize the
      WCS structure.  The calling routine must free the header character string
      when it is no longer needed. 
    
      THIS ROUTINE IS DEPRECATED. USE fits_hdr2str INSTEAD
    */
    {
        int hdutype, ncols, tstatus, length;
        int naxis1 = 1, naxis2 = 1;
        long tlmin, tlmax;
        char keyname[FLEN_KEYWORD];
        char valstring[FLEN_VALUE];
        char comm[2];
        char *cptr;
        /*  construct a string of 80 blanks, for adding fill to the keywords */
                     /*  12345678901234567890123456789012345678901234567890123456789012345678901234567890 */
        char blanks[] = "                                                                                ";
    
        if (*status > 0)
            return(*status);
    
        fits_get_hdu_type(fptr, &hdutype, status);
        if (hdutype == IMAGE_HDU)
        {
            ffpmsg("Can't read table WSC keywords. This HDU is not a table");
            return(*status = NOT_TABLE);
        }
    
        fits_get_num_cols(fptr, &ncols, status);
        
        if (xcol < 1 || xcol > ncols)
        {
            ffpmsg("illegal X axis column number in fftwcs");
            return(*status = BAD_COL_NUM);
        }
    
        if (ycol < 1 || ycol > ncols)
        {
            ffpmsg("illegal Y axis column number in fftwcs");
            return(*status = BAD_COL_NUM);
        }
    
        /* allocate character string for all the WCS keywords */
        *header = calloc(1, 2401);  /* room for up to 30 keywords */
        if (*header == 0)
        {
            ffpmsg("error allocating memory for WCS header keywords (fftwcs)");
            return(*status = MEMORY_ALLOCATION);
        }
    
        cptr = *header;
        comm[0] = '\0';
        
        tstatus = 0;
        ffkeyn("TLMIN",xcol,keyname,status);
        ffgkyj(fptr,keyname, &tlmin,NULL,&tstatus);
    
        if (!tstatus)
        {
            ffkeyn("TLMAX",xcol,keyname,status);
            ffgkyj(fptr,keyname, &tlmax,NULL,&tstatus);
        }
    
        if (!tstatus)
        {
            naxis1 = tlmax - tlmin + 1;
        }
    
        tstatus = 0;
        ffkeyn("TLMIN",ycol,keyname,status);
        ffgkyj(fptr,keyname, &tlmin,NULL,&tstatus);
    
        if (!tstatus)
        {
            ffkeyn("TLMAX",ycol,keyname,status);
            ffgkyj(fptr,keyname, &tlmax,NULL,&tstatus);
        }
    
        if (!tstatus)
        {
            naxis2 = tlmax - tlmin + 1;
        }
    
        /*            123456789012345678901234567890    */
        strcat(cptr, "NAXIS   =                    2");
        strncat(cptr, blanks, 50);
        cptr += 80;
    
        ffi2c(naxis1, valstring, status);   /* convert to formatted string */
        ffmkky("NAXIS1", valstring, comm, cptr, status);  /* construct the keyword*/
        strncat(cptr, blanks, 50);  /* pad with blanks */
        cptr += 80;
    
        strcpy(keyname, "NAXIS2");
        ffi2c(naxis2, valstring, status);   /* convert to formatted string */
        ffmkky(keyname, valstring, comm, cptr, status);  /* construct the keyword*/
        strncat(cptr, blanks, 50);  /* pad with blanks */
        cptr += 80;
    
        /* read the required header keywords (use defaults if not found) */
    
        /*  CTYPE1 keyword */
        tstatus = 0;
        ffkeyn("TCTYP",xcol,keyname,status);
        if (ffgkey(fptr, keyname, valstring, NULL, &tstatus) )
           valstring[0] =  '\0';
        ffmkky("CTYPE1", valstring, comm, cptr, status);  /* construct the keyword*/
        length = strlen(cptr);
        strncat(cptr, blanks, 80 - length);  /* pad with blanks */
        cptr += 80;
    
        /*  CTYPE2 keyword */
        tstatus = 0;
        ffkeyn("TCTYP",ycol,keyname,status);
        if (ffgkey(fptr, keyname, valstring, NULL, &tstatus) )
           valstring[0] =  '\0';
        ffmkky("CTYPE2", valstring, comm, cptr, status);  /* construct the keyword*/
        length = strlen(cptr);
        strncat(cptr, blanks, 80 - length);  /* pad with blanks */
        cptr += 80;
    
        /*  CRPIX1 keyword */
        tstatus = 0;
        ffkeyn("TCRPX",xcol,keyname,status);
        if (ffgkey(fptr, keyname, valstring, NULL, &tstatus) )
           strcpy(valstring, "1");
        ffmkky("CRPIX1", valstring, comm, cptr, status);  /* construct the keyword*/
        strncat(cptr, blanks, 50);  /* pad with blanks */
        cptr += 80;
    
        /*  CRPIX2 keyword */
        tstatus = 0;
        ffkeyn("TCRPX",ycol,keyname,status);
        if (ffgkey(fptr, keyname, valstring, NULL, &tstatus) )
           strcpy(valstring, "1");
        ffmkky("CRPIX2", valstring, comm, cptr, status);  /* construct the keyword*/
        strncat(cptr, blanks, 50);  /* pad with blanks */
        cptr += 80;
    
        /*  CRVAL1 keyword */
        tstatus = 0;
        ffkeyn("TCRVL",xcol,keyname,status);
        if (ffgkey(fptr, keyname, valstring, NULL, &tstatus) )
           strcpy(valstring, "1");
        ffmkky("CRVAL1", valstring, comm, cptr, status);  /* construct the keyword*/
        strncat(cptr, blanks, 50);  /* pad with blanks */
        cptr += 80;
    
        /*  CRVAL2 keyword */
        tstatus = 0;
        ffkeyn("TCRVL",ycol,keyname,status);
        if (ffgkey(fptr, keyname, valstring, NULL, &tstatus) )
           strcpy(valstring, "1");
        ffmkky("CRVAL2", valstring, comm, cptr, status);  /* construct the keyword*/
        strncat(cptr, blanks, 50);  /* pad with blanks */
        cptr += 80;
    
        /*  CDELT1 keyword */
        tstatus = 0;
        ffkeyn("TCDLT",xcol,keyname,status);
        if (ffgkey(fptr, keyname, valstring, NULL, &tstatus) )
           strcpy(valstring, "1");
        ffmkky("CDELT1", valstring, comm, cptr, status);  /* construct the keyword*/
        strncat(cptr, blanks, 50);  /* pad with blanks */
        cptr += 80;
    
        /*  CDELT2 keyword */
        tstatus = 0;
        ffkeyn("TCDLT",ycol,keyname,status);
        if (ffgkey(fptr, keyname, valstring, NULL, &tstatus) )
           strcpy(valstring, "1");
        ffmkky("CDELT2", valstring, comm, cptr, status);  /* construct the keyword*/
        strncat(cptr, blanks, 50);  /* pad with blanks */
        cptr += 80;
    
        /* the following keywords may not exist */
    
        /*  CROTA2 keyword */
        tstatus = 0;
        ffkeyn("TCROT",ycol,keyname,status);
        if (ffgkey(fptr, keyname, valstring, NULL, &tstatus) == 0 )
        {
            ffmkky("CROTA2", valstring, comm, cptr, status);  /* construct keyword*/
            strncat(cptr, blanks, 50);  /* pad with blanks */
            cptr += 80;
        }
    
        /*  EPOCH keyword */
        tstatus = 0;
        if (ffgkey(fptr, "EPOCH", valstring, NULL, &tstatus) == 0 )
        {
            ffmkky("EPOCH", valstring, comm, cptr, status);  /* construct keyword*/
            length = strlen(cptr);
            strncat(cptr, blanks, 80 - length);  /* pad with blanks */
            cptr += 80;
        }
    
        /*  EQUINOX keyword */
        tstatus = 0;
        if (ffgkey(fptr, "EQUINOX", valstring, NULL, &tstatus) == 0 )
        {
            ffmkky("EQUINOX", valstring, comm, cptr, status); /* construct keyword*/
            length = strlen(cptr);
            strncat(cptr, blanks, 80 - length);  /* pad with blanks */
            cptr += 80;
        }
    
        /*  RADECSYS keyword */
        tstatus = 0;
        if (ffgkey(fptr, "RADECSYS", valstring, NULL, &tstatus) == 0 )
        {
            ffmkky("RADECSYS", valstring, comm, cptr, status); /*construct keyword*/
            length = strlen(cptr);
            strncat(cptr, blanks, 80 - length);  /* pad with blanks */
            cptr += 80;
        }
    
        /*  TELESCOPE keyword */
        tstatus = 0;
        if (ffgkey(fptr, "TELESCOP", valstring, NULL, &tstatus) == 0 )
        {
            ffmkky("TELESCOP", valstring, comm, cptr, status); 
            length = strlen(cptr);
            strncat(cptr, blanks, 80 - length);  /* pad with blanks */
            cptr += 80;
        }
    
        /*  INSTRUME keyword */
        tstatus = 0;
        if (ffgkey(fptr, "INSTRUME", valstring, NULL, &tstatus) == 0 )
        {
            ffmkky("INSTRUME", valstring, comm, cptr, status);  
            length = strlen(cptr);
            strncat(cptr, blanks, 80 - length);  /* pad with blanks */
            cptr += 80;
        }
    
        /*  DETECTOR keyword */
        tstatus = 0;
        if (ffgkey(fptr, "DETECTOR", valstring, NULL, &tstatus) == 0 )
        {
            ffmkky("DETECTOR", valstring, comm, cptr, status);  
            length = strlen(cptr);
            strncat(cptr, blanks, 80 - length);  /* pad with blanks */
            cptr += 80;
        }
    
        /*  MJD-OBS keyword */
        tstatus = 0;
        if (ffgkey(fptr, "MJD-OBS", valstring, NULL, &tstatus) == 0 )
        {
            ffmkky("MJD-OBS", valstring, comm, cptr, status);  
            length = strlen(cptr);
            strncat(cptr, blanks, 80 - length);  /* pad with blanks */
            cptr += 80;
        }
    
        /*  DATE-OBS keyword */
        tstatus = 0;
        if (ffgkey(fptr, "DATE-OBS", valstring, NULL, &tstatus) == 0 )
        {
            ffmkky("DATE-OBS", valstring, comm, cptr, status);  
            length = strlen(cptr);
            strncat(cptr, blanks, 80 - length);  /* pad with blanks */
            cptr += 80;
        }
    
        /*  DATE keyword */
        tstatus = 0;
        if (ffgkey(fptr, "DATE", valstring, NULL, &tstatus) == 0 )
        {
            ffmkky("DATE", valstring, comm, cptr, status);  
            length = strlen(cptr);
            strncat(cptr, blanks, 80 - length);  /* pad with blanks */
            cptr += 80;
        }
    
        strcat(cptr, "END");
        strncat(cptr, blanks, 77);
    
        return(*status);
    }
    healpy-1.8.1/cfitsio/CMakeLists.txt0000654000175000017530000000537012272000775017622 0ustar  zoncaplanck00000000000000PROJECT(CFITSIO)
    CMAKE_MINIMUM_REQUIRED(VERSION 2.8.0)
    
    # Allow the developer to select if Dynamic or Static libraries are built
    OPTION (BUILD_SHARED_LIBS "Build Shared Libraries" ON)
    OPTION (USE_PTHREADS "Thread-safe build (using pthreads)" OFF)
    
    set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} "${CMAKE_SOURCE_DIR}")
    
    # Define project version
    SET(${PROJECT_NAME}_MAJOR_VERSION 3)
    SET(${PROJECT_NAME}_MINOR_VERSION 36)
    SET(${PROJECT_NAME}_VERSION ${${PROJECT_NAME}_MAJOR_VERSION}.${${PROJECT_NAME}_MINOR_VERSION})
    
    IF(WIN32)
        SET(LIB_NAME cfitsio)
    ELSE()
        SET(LIB_NAME libcfitsio)
    ENDIF()
    
    # Define
    IF(MSVC)
        ADD_DEFINITIONS(-D_CRT_SECURE_NO_DEPRECATE)
    ENDIF()
    
    #add_subdirectory (src)
    
    SET (LIB_TYPE STATIC)
    IF (BUILD_SHARED_LIBS)
      SET (LIB_TYPE SHARED)
    ENDIF (BUILD_SHARED_LIBS)
    
    
    FILE(GLOB H_FILES "*.h")
    
    IF (USE_PTHREADS)
        FIND_PACKAGE(pthreads REQUIRED)
        INCLUDE_DIRECTORIES(${PTHREADS_INCLUDE_DIR})
        ADD_DEFINITIONS(-D_REENTRANT)
    ENDIF()
    
    SET(SRC_FILES
        buffers.c cfileio.c checksum.c drvrfile.c drvrmem.c
        drvrnet.c drvrsmem.c drvrgsiftp.c editcol.c edithdu.c eval_l.c
        eval_y.c eval_f.c fitscore.c getcol.c getcolb.c getcold.c getcole.c
        getcoli.c getcolj.c getcolk.c getcoll.c getcols.c getcolsb.c
        getcoluk.c getcolui.c getcoluj.c getkey.c group.c grparser.c
        histo.c iraffits.c
        modkey.c putcol.c putcolb.c putcold.c putcole.c putcoli.c
        putcolj.c putcolk.c putcoluk.c putcoll.c putcols.c putcolsb.c
        putcolu.c putcolui.c putcoluj.c putkey.c region.c scalnull.c
        swapproc.c wcssub.c wcsutil.c imcompress.c quantize.c ricecomp.c
        pliocomp.c fits_hcompress.c fits_hdecompress.c zlib/zuncompress.c
        zlib/zcompress.c zlib/adler32.c zlib/crc32.c zlib/inffast.c
        zlib/inftrees.c zlib/trees.c zlib/zutil.c zlib/deflate.c
        zlib/infback.c zlib/inflate.c zlib/uncompr.c
        f77_wrap1.c f77_wrap2.c f77_wrap3.c f77_wrap4.c
    )
    
    ADD_LIBRARY(${LIB_NAME} ${LIB_TYPE} ${H_FILES} ${SRC_FILES})
    TARGET_LINK_LIBRARIES(${LIB_NAME}
        ${PTHREADS_LIBRARY}
    )
    
    SET_TARGET_PROPERTIES(${LIB_NAME} PROPERTIES
        VERSION ${PROJECT_NAME}_VERSION
    )
    
    ENABLE_TESTING()
    
    ADD_EXECUTABLE(TestProg testprog.c)
    TARGET_LINK_LIBRARIES(TestProg ${LIB_NAME})
    ADD_TEST(TestProg TestProg)
    
    ADD_EXECUTABLE(cookbook cookbook.c)
    TARGET_LINK_LIBRARIES(cookbook ${LIB_NAME})
    ADD_TEST(cookbook cookbook)
    
    ADD_EXECUTABLE(FPack fpack.c fpackutil.c)
    TARGET_LINK_LIBRARIES(FPack ${LIB_NAME})
    
    ADD_EXECUTABLE(Funpack funpack.c fpackutil.c)
    TARGET_LINK_LIBRARIES(Funpack ${LIB_NAME})
    
    # To expands the command line arguments in Windows, see:
    # http://msdn.microsoft.com/en-us/library/8bch7bkk.aspx
    if(MSVC)
      set_target_properties(FPack Funpack PROPERTIES 
        LINK_FLAGS "setargv.obj"
      )
    endif(MSVC)
    healpy-1.8.1/cfitsio/config.sub0000755000175000017530000010437612272000775017052 0ustar  zoncaplanck00000000000000#! /bin/sh
    # Configuration validation subroutine script.
    #   Copyright (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999,
    #   2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010
    #   Free Software Foundation, Inc.
    
    timestamp='2010-09-11'
    
    # This file is (in principle) common to ALL GNU software.
    # The presence of a machine in this file suggests that SOME GNU software
    # can handle that machine.  It does not imply ALL GNU software can.
    #
    # This file is free software; you can redistribute it and/or modify
    # it under the terms of the GNU General Public License as published by
    # the Free Software Foundation; either version 2 of the License, or
    # (at your option) any later version.
    #
    # This program is distributed in the hope that it will be useful,
    # but WITHOUT ANY WARRANTY; without even the implied warranty of
    # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    # GNU General Public License for more details.
    #
    # You should have received a copy of the GNU General Public License
    # along with this program; if not, write to the Free Software
    # Foundation, Inc., 51 Franklin Street - Fifth Floor, Boston, MA
    # 02110-1301, USA.
    #
    # As a special exception to the GNU General Public License, if you
    # distribute this file as part of a program that contains a
    # configuration script generated by Autoconf, you may include it under
    # the same distribution terms that you use for the rest of that program.
    
    
    # Please send patches to .  Submit a context
    # diff and a properly formatted GNU ChangeLog entry.
    #
    # Configuration subroutine to validate and canonicalize a configuration type.
    # Supply the specified configuration type as an argument.
    # If it is invalid, we print an error message on stderr and exit with code 1.
    # Otherwise, we print the canonical config type on stdout and succeed.
    
    # You can get the latest version of this script from:
    # http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.sub;hb=HEAD
    
    # This file is supposed to be the same for all GNU packages
    # and recognize all the CPU types, system types and aliases
    # that are meaningful with *any* GNU software.
    # Each package is responsible for reporting which valid configurations
    # it does not support.  The user should be able to distinguish
    # a failure to support a valid configuration from a meaningless
    # configuration.
    
    # The goal of this file is to map all the various variations of a given
    # machine specification into a single specification in the form:
    #	CPU_TYPE-MANUFACTURER-OPERATING_SYSTEM
    # or in some cases, the newer four-part form:
    #	CPU_TYPE-MANUFACTURER-KERNEL-OPERATING_SYSTEM
    # It is wrong to echo any other type of specification.
    
    me=`echo "$0" | sed -e 's,.*/,,'`
    
    usage="\
    Usage: $0 [OPTION] CPU-MFR-OPSYS
           $0 [OPTION] ALIAS
    
    Canonicalize a configuration name.
    
    Operation modes:
      -h, --help         print this help, then exit
      -t, --time-stamp   print date of last modification, then exit
      -v, --version      print version number, then exit
    
    Report bugs and patches to ."
    
    version="\
    GNU config.sub ($timestamp)
    
    Copyright (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999, 2000,
    2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010 Free
    Software Foundation, Inc.
    
    This is free software; see the source for copying conditions.  There is NO
    warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE."
    
    help="
    Try \`$me --help' for more information."
    
    # Parse command line
    while test $# -gt 0 ; do
      case $1 in
        --time-stamp | --time* | -t )
           echo "$timestamp" ; exit ;;
        --version | -v )
           echo "$version" ; exit ;;
        --help | --h* | -h )
           echo "$usage"; exit ;;
        -- )     # Stop option processing
           shift; break ;;
        - )	# Use stdin as input.
           break ;;
        -* )
           echo "$me: invalid option $1$help"
           exit 1 ;;
    
        *local*)
           # First pass through any local machine types.
           echo $1
           exit ;;
    
        * )
           break ;;
      esac
    done
    
    case $# in
     0) echo "$me: missing argument$help" >&2
        exit 1;;
     1) ;;
     *) echo "$me: too many arguments$help" >&2
        exit 1;;
    esac
    
    # Separate what the user gave into CPU-COMPANY and OS or KERNEL-OS (if any).
    # Here we must recognize all the valid KERNEL-OS combinations.
    maybe_os=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\2/'`
    case $maybe_os in
      nto-qnx* | linux-gnu* | linux-android* | linux-dietlibc | linux-newlib* | \
      linux-uclibc* | uclinux-uclibc* | uclinux-gnu* | kfreebsd*-gnu* | \
      knetbsd*-gnu* | netbsd*-gnu* | \
      kopensolaris*-gnu* | \
      storm-chaos* | os2-emx* | rtmk-nova*)
        os=-$maybe_os
        basic_machine=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\1/'`
        ;;
      *)
        basic_machine=`echo $1 | sed 's/-[^-]*$//'`
        if [ $basic_machine != $1 ]
        then os=`echo $1 | sed 's/.*-/-/'`
        else os=; fi
        ;;
    esac
    
    ### Let's recognize common machines as not being operating systems so
    ### that things like config.sub decstation-3100 work.  We also
    ### recognize some manufacturers as not being operating systems, so we
    ### can provide default operating systems below.
    case $os in
    	-sun*os*)
    		# Prevent following clause from handling this invalid input.
    		;;
    	-dec* | -mips* | -sequent* | -encore* | -pc532* | -sgi* | -sony* | \
    	-att* | -7300* | -3300* | -delta* | -motorola* | -sun[234]* | \
    	-unicom* | -ibm* | -next | -hp | -isi* | -apollo | -altos* | \
    	-convergent* | -ncr* | -news | -32* | -3600* | -3100* | -hitachi* |\
    	-c[123]* | -convex* | -sun | -crds | -omron* | -dg | -ultra | -tti* | \
    	-harris | -dolphin | -highlevel | -gould | -cbm | -ns | -masscomp | \
    	-apple | -axis | -knuth | -cray | -microblaze)
    		os=
    		basic_machine=$1
    		;;
            -bluegene*)
    	        os=-cnk
    		;;
    	-sim | -cisco | -oki | -wec | -winbond)
    		os=
    		basic_machine=$1
    		;;
    	-scout)
    		;;
    	-wrs)
    		os=-vxworks
    		basic_machine=$1
    		;;
    	-chorusos*)
    		os=-chorusos
    		basic_machine=$1
    		;;
     	-chorusrdb)
     		os=-chorusrdb
    		basic_machine=$1
     		;;
    	-hiux*)
    		os=-hiuxwe2
    		;;
    	-sco6)
    		os=-sco5v6
    		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
    		;;
    	-sco5)
    		os=-sco3.2v5
    		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
    		;;
    	-sco4)
    		os=-sco3.2v4
    		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
    		;;
    	-sco3.2.[4-9]*)
    		os=`echo $os | sed -e 's/sco3.2./sco3.2v/'`
    		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
    		;;
    	-sco3.2v[4-9]*)
    		# Don't forget version if it is 3.2v4 or newer.
    		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
    		;;
    	-sco5v6*)
    		# Don't forget version if it is 3.2v4 or newer.
    		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
    		;;
    	-sco*)
    		os=-sco3.2v2
    		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
    		;;
    	-udk*)
    		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
    		;;
    	-isc)
    		os=-isc2.2
    		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
    		;;
    	-clix*)
    		basic_machine=clipper-intergraph
    		;;
    	-isc*)
    		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
    		;;
    	-lynx*)
    		os=-lynxos
    		;;
    	-ptx*)
    		basic_machine=`echo $1 | sed -e 's/86-.*/86-sequent/'`
    		;;
    	-windowsnt*)
    		os=`echo $os | sed -e 's/windowsnt/winnt/'`
    		;;
    	-psos*)
    		os=-psos
    		;;
    	-mint | -mint[0-9]*)
    		basic_machine=m68k-atari
    		os=-mint
    		;;
    esac
    
    # Decode aliases for certain CPU-COMPANY combinations.
    case $basic_machine in
    	# Recognize the basic CPU types without company name.
    	# Some are omitted here because they have special meanings below.
    	1750a | 580 \
    	| a29k \
    	| alpha | alphaev[4-8] | alphaev56 | alphaev6[78] | alphapca5[67] \
    	| alpha64 | alpha64ev[4-8] | alpha64ev56 | alpha64ev6[78] | alpha64pca5[67] \
    	| am33_2.0 \
    	| arc | arm | arm[bl]e | arme[lb] | armv[2345] | armv[345][lb] | avr | avr32 \
    	| bfin \
    	| c4x | clipper \
    	| d10v | d30v | dlx | dsp16xx \
    	| fido | fr30 | frv \
    	| h8300 | h8500 | hppa | hppa1.[01] | hppa2.0 | hppa2.0[nw] | hppa64 \
    	| i370 | i860 | i960 | ia64 \
    	| ip2k | iq2000 \
    	| lm32 \
    	| m32c | m32r | m32rle | m68000 | m68k | m88k \
    	| maxq | mb | microblaze | mcore | mep | metag \
    	| mips | mipsbe | mipseb | mipsel | mipsle \
    	| mips16 \
    	| mips64 | mips64el \
    	| mips64octeon | mips64octeonel \
    	| mips64orion | mips64orionel \
    	| mips64r5900 | mips64r5900el \
    	| mips64vr | mips64vrel \
    	| mips64vr4100 | mips64vr4100el \
    	| mips64vr4300 | mips64vr4300el \
    	| mips64vr5000 | mips64vr5000el \
    	| mips64vr5900 | mips64vr5900el \
    	| mipsisa32 | mipsisa32el \
    	| mipsisa32r2 | mipsisa32r2el \
    	| mipsisa64 | mipsisa64el \
    	| mipsisa64r2 | mipsisa64r2el \
    	| mipsisa64sb1 | mipsisa64sb1el \
    	| mipsisa64sr71k | mipsisa64sr71kel \
    	| mipstx39 | mipstx39el \
    	| mn10200 | mn10300 \
    	| moxie \
    	| mt \
    	| msp430 \
    	| nds32 | nds32le | nds32be \
    	| nios | nios2 \
    	| ns16k | ns32k \
    	| or32 \
    	| pdp10 | pdp11 | pj | pjl \
    	| powerpc | powerpc64 | powerpc64le | powerpcle | ppcbe \
    	| pyramid \
    	| rx \
    	| score \
    	| sh | sh[1234] | sh[24]a | sh[24]aeb | sh[23]e | sh[34]eb | sheb | shbe | shle | sh[1234]le | sh3ele \
    	| sh64 | sh64le \
    	| sparc | sparc64 | sparc64b | sparc64v | sparc86x | sparclet | sparclite \
    	| sparcv8 | sparcv9 | sparcv9b | sparcv9v \
    	| spu | strongarm \
    	| tahoe | thumb | tic4x | tic54x | tic55x | tic6x | tic80 | tron \
    	| ubicom32 \
    	| v850 | v850e \
    	| we32k \
    	| x86 | xc16x | xscale | xscalee[bl] | xstormy16 | xtensa \
    	| z8k | z80)
    		basic_machine=$basic_machine-unknown
    		;;
    	c54x)
    		basic_machine=tic54x-unknown
    		;;
    	c55x)
    		basic_machine=tic55x-unknown
    		;;
    	c6x)
    		basic_machine=tic6x-unknown
    		;;
    	m6811 | m68hc11 | m6812 | m68hc12 | picochip)
    		# Motorola 68HC11/12.
    		basic_machine=$basic_machine-unknown
    		os=-none
    		;;
    	m88110 | m680[12346]0 | m683?2 | m68360 | m5200 | v70 | w65 | z8k)
    		;;
    	ms1)
    		basic_machine=mt-unknown
    		;;
    
    	# We use `pc' rather than `unknown'
    	# because (1) that's what they normally are, and
    	# (2) the word "unknown" tends to confuse beginning users.
    	i*86 | x86_64)
    	  basic_machine=$basic_machine-pc
    	  ;;
    	# Object if more than one company name word.
    	*-*-*)
    		echo Invalid configuration \`$1\': machine \`$basic_machine\' not recognized 1>&2
    		exit 1
    		;;
    	# Recognize the basic CPU types with company name.
    	580-* \
    	| a29k-* \
    	| alpha-* | alphaev[4-8]-* | alphaev56-* | alphaev6[78]-* \
    	| alpha64-* | alpha64ev[4-8]-* | alpha64ev56-* | alpha64ev6[78]-* \
    	| alphapca5[67]-* | alpha64pca5[67]-* | arc-* \
    	| arm-*  | armbe-* | armle-* | armeb-* | armv*-* \
    	| avr-* | avr32-* \
    	| bfin-* | bs2000-* \
    	| c[123]* | c30-* | [cjt]90-* | c4x-* \
    	| clipper-* | craynv-* | cydra-* \
    	| d10v-* | d30v-* | dlx-* \
    	| elxsi-* \
    	| f30[01]-* | f700-* | fido-* | fr30-* | frv-* | fx80-* \
    	| h8300-* | h8500-* \
    	| hppa-* | hppa1.[01]-* | hppa2.0-* | hppa2.0[nw]-* | hppa64-* \
    	| i*86-* | i860-* | i960-* | ia64-* \
    	| ip2k-* | iq2000-* \
    	| lm32-* \
    	| m32c-* | m32r-* | m32rle-* \
    	| m68000-* | m680[012346]0-* | m68360-* | m683?2-* | m68k-* \
    	| m88110-* | m88k-* | maxq-* | mcore-* | metag-* | microblaze-* \
    	| mips-* | mipsbe-* | mipseb-* | mipsel-* | mipsle-* \
    	| mips16-* \
    	| mips64-* | mips64el-* \
    	| mips64octeon-* | mips64octeonel-* \
    	| mips64orion-* | mips64orionel-* \
    	| mips64r5900-* | mips64r5900el-* \
    	| mips64vr-* | mips64vrel-* \
    	| mips64vr4100-* | mips64vr4100el-* \
    	| mips64vr4300-* | mips64vr4300el-* \
    	| mips64vr5000-* | mips64vr5000el-* \
    	| mips64vr5900-* | mips64vr5900el-* \
    	| mipsisa32-* | mipsisa32el-* \
    	| mipsisa32r2-* | mipsisa32r2el-* \
    	| mipsisa64-* | mipsisa64el-* \
    	| mipsisa64r2-* | mipsisa64r2el-* \
    	| mipsisa64sb1-* | mipsisa64sb1el-* \
    	| mipsisa64sr71k-* | mipsisa64sr71kel-* \
    	| mipstx39-* | mipstx39el-* \
    	| mmix-* \
    	| mt-* \
    	| msp430-* \
    	| nds32-* | nds32le-* | nds32be-* \
    	| nios-* | nios2-* \
    	| none-* | np1-* | ns16k-* | ns32k-* \
    	| orion-* \
    	| pdp10-* | pdp11-* | pj-* | pjl-* | pn-* | power-* \
    	| powerpc-* | powerpc64-* | powerpc64le-* | powerpcle-* | ppcbe-* \
    	| pyramid-* \
    	| romp-* | rs6000-* | rx-* \
    	| sh-* | sh[1234]-* | sh[24]a-* | sh[24]aeb-* | sh[23]e-* | sh[34]eb-* | sheb-* | shbe-* \
    	| shle-* | sh[1234]le-* | sh3ele-* | sh64-* | sh64le-* \
    	| sparc-* | sparc64-* | sparc64b-* | sparc64v-* | sparc86x-* | sparclet-* \
    	| sparclite-* \
    	| sparcv8-* | sparcv9-* | sparcv9b-* | sparcv9v-* | strongarm-* | sv1-* | sx?-* \
    	| tahoe-* | thumb-* \
    	| tic30-* | tic4x-* | tic54x-* | tic55x-* | tic6x-* | tic80-* \
    	| tile-* | tilegx-* \
    	| tron-* \
    	| ubicom32-* \
    	| v850-* | v850e-* | vax-* \
    	| we32k-* \
    	| x86-* | x86_64-* | xc16x-* | xps100-* | xscale-* | xscalee[bl]-* \
    	| xstormy16-* | xtensa*-* \
    	| ymp-* \
    	| z8k-* | z80-*)
    		;;
    	# Recognize the basic CPU types without company name, with glob match.
    	xtensa*)
    		basic_machine=$basic_machine-unknown
    		;;
    	# Recognize the various machine names and aliases which stand
    	# for a CPU type and a company and sometimes even an OS.
    	386bsd)
    		basic_machine=i386-unknown
    		os=-bsd
    		;;
    	3b1 | 7300 | 7300-att | att-7300 | pc7300 | safari | unixpc)
    		basic_machine=m68000-att
    		;;
    	3b*)
    		basic_machine=we32k-att
    		;;
    	a29khif)
    		basic_machine=a29k-amd
    		os=-udi
    		;;
        	abacus)
    		basic_machine=abacus-unknown
    		;;
    	adobe68k)
    		basic_machine=m68010-adobe
    		os=-scout
    		;;
    	alliant | fx80)
    		basic_machine=fx80-alliant
    		;;
    	altos | altos3068)
    		basic_machine=m68k-altos
    		;;
    	am29k)
    		basic_machine=a29k-none
    		os=-bsd
    		;;
    	amd64)
    		basic_machine=x86_64-pc
    		;;
    	amd64-*)
    		basic_machine=x86_64-`echo $basic_machine | sed 's/^[^-]*-//'`
    		;;
    	amdahl)
    		basic_machine=580-amdahl
    		os=-sysv
    		;;
    	amiga | amiga-*)
    		basic_machine=m68k-unknown
    		;;
    	amigaos | amigados)
    		basic_machine=m68k-unknown
    		os=-amigaos
    		;;
    	amigaunix | amix)
    		basic_machine=m68k-unknown
    		os=-sysv4
    		;;
    	apollo68)
    		basic_machine=m68k-apollo
    		os=-sysv
    		;;
    	apollo68bsd)
    		basic_machine=m68k-apollo
    		os=-bsd
    		;;
    	aros)
    		basic_machine=i386-pc
    		os=-aros
    		;;
    	aux)
    		basic_machine=m68k-apple
    		os=-aux
    		;;
    	balance)
    		basic_machine=ns32k-sequent
    		os=-dynix
    		;;
    	blackfin)
    		basic_machine=bfin-unknown
    		os=-linux
    		;;
    	blackfin-*)
    		basic_machine=bfin-`echo $basic_machine | sed 's/^[^-]*-//'`
    		os=-linux
    		;;
    	bluegene*)
    		basic_machine=powerpc-ibm
    		os=-cnk
    		;;
    	c54x-*)
    		basic_machine=tic54x-`echo $basic_machine | sed 's/^[^-]*-//'`
    		;;
    	c55x-*)
    		basic_machine=tic55x-`echo $basic_machine | sed 's/^[^-]*-//'`
    		;;
    	c6x-*)
    		basic_machine=tic6x-`echo $basic_machine | sed 's/^[^-]*-//'`
    		;;
    	c90)
    		basic_machine=c90-cray
    		os=-unicos
    		;;
            cegcc)
    		basic_machine=arm-unknown
    		os=-cegcc
    		;;
    	convex-c1)
    		basic_machine=c1-convex
    		os=-bsd
    		;;
    	convex-c2)
    		basic_machine=c2-convex
    		os=-bsd
    		;;
    	convex-c32)
    		basic_machine=c32-convex
    		os=-bsd
    		;;
    	convex-c34)
    		basic_machine=c34-convex
    		os=-bsd
    		;;
    	convex-c38)
    		basic_machine=c38-convex
    		os=-bsd
    		;;
    	cray | j90)
    		basic_machine=j90-cray
    		os=-unicos
    		;;
    	craynv)
    		basic_machine=craynv-cray
    		os=-unicosmp
    		;;
    	cr16)
    		basic_machine=cr16-unknown
    		os=-elf
    		;;
    	crds | unos)
    		basic_machine=m68k-crds
    		;;
    	crisv32 | crisv32-* | etraxfs*)
    		basic_machine=crisv32-axis
    		;;
    	cris | cris-* | etrax*)
    		basic_machine=cris-axis
    		;;
    	crx)
    		basic_machine=crx-unknown
    		os=-elf
    		;;
    	da30 | da30-*)
    		basic_machine=m68k-da30
    		;;
    	decstation | decstation-3100 | pmax | pmax-* | pmin | dec3100 | decstatn)
    		basic_machine=mips-dec
    		;;
    	decsystem10* | dec10*)
    		basic_machine=pdp10-dec
    		os=-tops10
    		;;
    	decsystem20* | dec20*)
    		basic_machine=pdp10-dec
    		os=-tops20
    		;;
    	delta | 3300 | motorola-3300 | motorola-delta \
    	      | 3300-motorola | delta-motorola)
    		basic_machine=m68k-motorola
    		;;
    	delta88)
    		basic_machine=m88k-motorola
    		os=-sysv3
    		;;
    	dicos)
    		basic_machine=i686-pc
    		os=-dicos
    		;;
    	djgpp)
    		basic_machine=i586-pc
    		os=-msdosdjgpp
    		;;
    	dpx20 | dpx20-*)
    		basic_machine=rs6000-bull
    		os=-bosx
    		;;
    	dpx2* | dpx2*-bull)
    		basic_machine=m68k-bull
    		os=-sysv3
    		;;
    	ebmon29k)
    		basic_machine=a29k-amd
    		os=-ebmon
    		;;
    	elxsi)
    		basic_machine=elxsi-elxsi
    		os=-bsd
    		;;
    	encore | umax | mmax)
    		basic_machine=ns32k-encore
    		;;
    	es1800 | OSE68k | ose68k | ose | OSE)
    		basic_machine=m68k-ericsson
    		os=-ose
    		;;
    	fx2800)
    		basic_machine=i860-alliant
    		;;
    	genix)
    		basic_machine=ns32k-ns
    		;;
    	gmicro)
    		basic_machine=tron-gmicro
    		os=-sysv
    		;;
    	go32)
    		basic_machine=i386-pc
    		os=-go32
    		;;
    	h3050r* | hiux*)
    		basic_machine=hppa1.1-hitachi
    		os=-hiuxwe2
    		;;
    	h8300hms)
    		basic_machine=h8300-hitachi
    		os=-hms
    		;;
    	h8300xray)
    		basic_machine=h8300-hitachi
    		os=-xray
    		;;
    	h8500hms)
    		basic_machine=h8500-hitachi
    		os=-hms
    		;;
    	harris)
    		basic_machine=m88k-harris
    		os=-sysv3
    		;;
    	hp300-*)
    		basic_machine=m68k-hp
    		;;
    	hp300bsd)
    		basic_machine=m68k-hp
    		os=-bsd
    		;;
    	hp300hpux)
    		basic_machine=m68k-hp
    		os=-hpux
    		;;
    	hp3k9[0-9][0-9] | hp9[0-9][0-9])
    		basic_machine=hppa1.0-hp
    		;;
    	hp9k2[0-9][0-9] | hp9k31[0-9])
    		basic_machine=m68000-hp
    		;;
    	hp9k3[2-9][0-9])
    		basic_machine=m68k-hp
    		;;
    	hp9k6[0-9][0-9] | hp6[0-9][0-9])
    		basic_machine=hppa1.0-hp
    		;;
    	hp9k7[0-79][0-9] | hp7[0-79][0-9])
    		basic_machine=hppa1.1-hp
    		;;
    	hp9k78[0-9] | hp78[0-9])
    		# FIXME: really hppa2.0-hp
    		basic_machine=hppa1.1-hp
    		;;
    	hp9k8[67]1 | hp8[67]1 | hp9k80[24] | hp80[24] | hp9k8[78]9 | hp8[78]9 | hp9k893 | hp893)
    		# FIXME: really hppa2.0-hp
    		basic_machine=hppa1.1-hp
    		;;
    	hp9k8[0-9][13679] | hp8[0-9][13679])
    		basic_machine=hppa1.1-hp
    		;;
    	hp9k8[0-9][0-9] | hp8[0-9][0-9])
    		basic_machine=hppa1.0-hp
    		;;
    	hppa-next)
    		os=-nextstep3
    		;;
    	hppaosf)
    		basic_machine=hppa1.1-hp
    		os=-osf
    		;;
    	hppro)
    		basic_machine=hppa1.1-hp
    		os=-proelf
    		;;
    	i370-ibm* | ibm*)
    		basic_machine=i370-ibm
    		;;
    # I'm not sure what "Sysv32" means.  Should this be sysv3.2?
    	i*86v32)
    		basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
    		os=-sysv32
    		;;
    	i*86v4*)
    		basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
    		os=-sysv4
    		;;
    	i*86v)
    		basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
    		os=-sysv
    		;;
    	i*86sol2)
    		basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
    		os=-solaris2
    		;;
    	i386mach)
    		basic_machine=i386-mach
    		os=-mach
    		;;
    	i386-vsta | vsta)
    		basic_machine=i386-unknown
    		os=-vsta
    		;;
    	iris | iris4d)
    		basic_machine=mips-sgi
    		case $os in
    		    -irix*)
    			;;
    		    *)
    			os=-irix4
    			;;
    		esac
    		;;
    	isi68 | isi)
    		basic_machine=m68k-isi
    		os=-sysv
    		;;
    	m68knommu)
    		basic_machine=m68k-unknown
    		os=-linux
    		;;
    	m68knommu-*)
    		basic_machine=m68k-`echo $basic_machine | sed 's/^[^-]*-//'`
    		os=-linux
    		;;
    	m88k-omron*)
    		basic_machine=m88k-omron
    		;;
    	magnum | m3230)
    		basic_machine=mips-mips
    		os=-sysv
    		;;
    	merlin)
    		basic_machine=ns32k-utek
    		os=-sysv
    		;;
            microblaze)
    		basic_machine=microblaze-xilinx
    		;;
    	mingw32)
    		basic_machine=i386-pc
    		os=-mingw32
    		;;
    	mingw32ce)
    		basic_machine=arm-unknown
    		os=-mingw32ce
    		;;
    	miniframe)
    		basic_machine=m68000-convergent
    		;;
    	*mint | -mint[0-9]* | *MiNT | *MiNT[0-9]*)
    		basic_machine=m68k-atari
    		os=-mint
    		;;
    	mips3*-*)
    		basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'`
    		;;
    	mips3*)
    		basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'`-unknown
    		;;
    	monitor)
    		basic_machine=m68k-rom68k
    		os=-coff
    		;;
    	morphos)
    		basic_machine=powerpc-unknown
    		os=-morphos
    		;;
    	msdos)
    		basic_machine=i386-pc
    		os=-msdos
    		;;
    	ms1-*)
    		basic_machine=`echo $basic_machine | sed -e 's/ms1-/mt-/'`
    		;;
    	mvs)
    		basic_machine=i370-ibm
    		os=-mvs
    		;;
    	ncr3000)
    		basic_machine=i486-ncr
    		os=-sysv4
    		;;
    	netbsd386)
    		basic_machine=i386-unknown
    		os=-netbsd
    		;;
    	netwinder)
    		basic_machine=armv4l-rebel
    		os=-linux
    		;;
    	news | news700 | news800 | news900)
    		basic_machine=m68k-sony
    		os=-newsos
    		;;
    	news1000)
    		basic_machine=m68030-sony
    		os=-newsos
    		;;
    	news-3600 | risc-news)
    		basic_machine=mips-sony
    		os=-newsos
    		;;
    	necv70)
    		basic_machine=v70-nec
    		os=-sysv
    		;;
    	next | m*-next )
    		basic_machine=m68k-next
    		case $os in
    		    -nextstep* )
    			;;
    		    -ns2*)
    		      os=-nextstep2
    			;;
    		    *)
    		      os=-nextstep3
    			;;
    		esac
    		;;
    	nh3000)
    		basic_machine=m68k-harris
    		os=-cxux
    		;;
    	nh[45]000)
    		basic_machine=m88k-harris
    		os=-cxux
    		;;
    	nindy960)
    		basic_machine=i960-intel
    		os=-nindy
    		;;
    	mon960)
    		basic_machine=i960-intel
    		os=-mon960
    		;;
    	nonstopux)
    		basic_machine=mips-compaq
    		os=-nonstopux
    		;;
    	np1)
    		basic_machine=np1-gould
    		;;
            neo-tandem)
    		basic_machine=neo-tandem
    		;;
            nse-tandem)
    		basic_machine=nse-tandem
    		;;
    	nsr-tandem)
    		basic_machine=nsr-tandem
    		;;
    	op50n-* | op60c-*)
    		basic_machine=hppa1.1-oki
    		os=-proelf
    		;;
    	openrisc | openrisc-*)
    		basic_machine=or32-unknown
    		;;
    	os400)
    		basic_machine=powerpc-ibm
    		os=-os400
    		;;
    	OSE68000 | ose68000)
    		basic_machine=m68000-ericsson
    		os=-ose
    		;;
    	os68k)
    		basic_machine=m68k-none
    		os=-os68k
    		;;
    	pa-hitachi)
    		basic_machine=hppa1.1-hitachi
    		os=-hiuxwe2
    		;;
    	paragon)
    		basic_machine=i860-intel
    		os=-osf
    		;;
    	parisc)
    		basic_machine=hppa-unknown
    		os=-linux
    		;;
    	parisc-*)
    		basic_machine=hppa-`echo $basic_machine | sed 's/^[^-]*-//'`
    		os=-linux
    		;;
    	pbd)
    		basic_machine=sparc-tti
    		;;
    	pbb)
    		basic_machine=m68k-tti
    		;;
    	pc532 | pc532-*)
    		basic_machine=ns32k-pc532
    		;;
    	pc98)
    		basic_machine=i386-pc
    		;;
    	pc98-*)
    		basic_machine=i386-`echo $basic_machine | sed 's/^[^-]*-//'`
    		;;
    	pentium | p5 | k5 | k6 | nexgen | viac3)
    		basic_machine=i586-pc
    		;;
    	pentiumpro | p6 | 6x86 | athlon | athlon_*)
    		basic_machine=i686-pc
    		;;
    	pentiumii | pentium2 | pentiumiii | pentium3)
    		basic_machine=i686-pc
    		;;
    	pentium4)
    		basic_machine=i786-pc
    		;;
    	pentium-* | p5-* | k5-* | k6-* | nexgen-* | viac3-*)
    		basic_machine=i586-`echo $basic_machine | sed 's/^[^-]*-//'`
    		;;
    	pentiumpro-* | p6-* | 6x86-* | athlon-*)
    		basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'`
    		;;
    	pentiumii-* | pentium2-* | pentiumiii-* | pentium3-*)
    		basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'`
    		;;
    	pentium4-*)
    		basic_machine=i786-`echo $basic_machine | sed 's/^[^-]*-//'`
    		;;
    	pn)
    		basic_machine=pn-gould
    		;;
    	power)	basic_machine=power-ibm
    		;;
    	ppc)	basic_machine=powerpc-unknown
    		;;
    	ppc-*)	basic_machine=powerpc-`echo $basic_machine | sed 's/^[^-]*-//'`
    		;;
    	ppcle | powerpclittle | ppc-le | powerpc-little)
    		basic_machine=powerpcle-unknown
    		;;
    	ppcle-* | powerpclittle-*)
    		basic_machine=powerpcle-`echo $basic_machine | sed 's/^[^-]*-//'`
    		;;
    	ppc64)	basic_machine=powerpc64-unknown
    		;;
    	ppc64-*) basic_machine=powerpc64-`echo $basic_machine | sed 's/^[^-]*-//'`
    		;;
    	ppc64le | powerpc64little | ppc64-le | powerpc64-little)
    		basic_machine=powerpc64le-unknown
    		;;
    	ppc64le-* | powerpc64little-*)
    		basic_machine=powerpc64le-`echo $basic_machine | sed 's/^[^-]*-//'`
    		;;
    	ps2)
    		basic_machine=i386-ibm
    		;;
    	pw32)
    		basic_machine=i586-unknown
    		os=-pw32
    		;;
    	rdos)
    		basic_machine=i386-pc
    		os=-rdos
    		;;
    	rom68k)
    		basic_machine=m68k-rom68k
    		os=-coff
    		;;
    	rm[46]00)
    		basic_machine=mips-siemens
    		;;
    	rtpc | rtpc-*)
    		basic_machine=romp-ibm
    		;;
    	s390 | s390-*)
    		basic_machine=s390-ibm
    		;;
    	s390x | s390x-*)
    		basic_machine=s390x-ibm
    		;;
    	sa29200)
    		basic_machine=a29k-amd
    		os=-udi
    		;;
    	sb1)
    		basic_machine=mipsisa64sb1-unknown
    		;;
    	sb1el)
    		basic_machine=mipsisa64sb1el-unknown
    		;;
    	sde)
    		basic_machine=mipsisa32-sde
    		os=-elf
    		;;
    	sei)
    		basic_machine=mips-sei
    		os=-seiux
    		;;
    	sequent)
    		basic_machine=i386-sequent
    		;;
    	sh)
    		basic_machine=sh-hitachi
    		os=-hms
    		;;
    	sh5el)
    		basic_machine=sh5le-unknown
    		;;
    	sh64)
    		basic_machine=sh64-unknown
    		;;
    	sparclite-wrs | simso-wrs)
    		basic_machine=sparclite-wrs
    		os=-vxworks
    		;;
    	sps7)
    		basic_machine=m68k-bull
    		os=-sysv2
    		;;
    	spur)
    		basic_machine=spur-unknown
    		;;
    	st2000)
    		basic_machine=m68k-tandem
    		;;
    	stratus)
    		basic_machine=i860-stratus
    		os=-sysv4
    		;;
    	sun2)
    		basic_machine=m68000-sun
    		;;
    	sun2os3)
    		basic_machine=m68000-sun
    		os=-sunos3
    		;;
    	sun2os4)
    		basic_machine=m68000-sun
    		os=-sunos4
    		;;
    	sun3os3)
    		basic_machine=m68k-sun
    		os=-sunos3
    		;;
    	sun3os4)
    		basic_machine=m68k-sun
    		os=-sunos4
    		;;
    	sun4os3)
    		basic_machine=sparc-sun
    		os=-sunos3
    		;;
    	sun4os4)
    		basic_machine=sparc-sun
    		os=-sunos4
    		;;
    	sun4sol2)
    		basic_machine=sparc-sun
    		os=-solaris2
    		;;
    	sun3 | sun3-*)
    		basic_machine=m68k-sun
    		;;
    	sun4)
    		basic_machine=sparc-sun
    		;;
    	sun386 | sun386i | roadrunner)
    		basic_machine=i386-sun
    		;;
    	sv1)
    		basic_machine=sv1-cray
    		os=-unicos
    		;;
    	symmetry)
    		basic_machine=i386-sequent
    		os=-dynix
    		;;
    	t3e)
    		basic_machine=alphaev5-cray
    		os=-unicos
    		;;
    	t90)
    		basic_machine=t90-cray
    		os=-unicos
    		;;
            # This must be matched before tile*.
            tilegx*)
    		basic_machine=tilegx-unknown
    		os=-linux-gnu
    		;;
    	tile*)
    		basic_machine=tile-unknown
    		os=-linux-gnu
    		;;
    	tx39)
    		basic_machine=mipstx39-unknown
    		;;
    	tx39el)
    		basic_machine=mipstx39el-unknown
    		;;
    	toad1)
    		basic_machine=pdp10-xkl
    		os=-tops20
    		;;
    	tower | tower-32)
    		basic_machine=m68k-ncr
    		;;
    	tpf)
    		basic_machine=s390x-ibm
    		os=-tpf
    		;;
    	udi29k)
    		basic_machine=a29k-amd
    		os=-udi
    		;;
    	ultra3)
    		basic_machine=a29k-nyu
    		os=-sym1
    		;;
    	v810 | necv810)
    		basic_machine=v810-nec
    		os=-none
    		;;
    	vaxv)
    		basic_machine=vax-dec
    		os=-sysv
    		;;
    	vms)
    		basic_machine=vax-dec
    		os=-vms
    		;;
    	vpp*|vx|vx-*)
    		basic_machine=f301-fujitsu
    		;;
    	vxworks960)
    		basic_machine=i960-wrs
    		os=-vxworks
    		;;
    	vxworks68)
    		basic_machine=m68k-wrs
    		os=-vxworks
    		;;
    	vxworks29k)
    		basic_machine=a29k-wrs
    		os=-vxworks
    		;;
    	w65*)
    		basic_machine=w65-wdc
    		os=-none
    		;;
    	w89k-*)
    		basic_machine=hppa1.1-winbond
    		os=-proelf
    		;;
    	xbox)
    		basic_machine=i686-pc
    		os=-mingw32
    		;;
    	xps | xps100)
    		basic_machine=xps100-honeywell
    		;;
    	ymp)
    		basic_machine=ymp-cray
    		os=-unicos
    		;;
    	z8k-*-coff)
    		basic_machine=z8k-unknown
    		os=-sim
    		;;
    	z80-*-coff)
    		basic_machine=z80-unknown
    		os=-sim
    		;;
    	none)
    		basic_machine=none-none
    		os=-none
    		;;
    
    # Here we handle the default manufacturer of certain CPU types.  It is in
    # some cases the only manufacturer, in others, it is the most popular.
    	w89k)
    		basic_machine=hppa1.1-winbond
    		;;
    	op50n)
    		basic_machine=hppa1.1-oki
    		;;
    	op60c)
    		basic_machine=hppa1.1-oki
    		;;
    	romp)
    		basic_machine=romp-ibm
    		;;
    	mmix)
    		basic_machine=mmix-knuth
    		;;
    	rs6000)
    		basic_machine=rs6000-ibm
    		;;
    	vax)
    		basic_machine=vax-dec
    		;;
    	pdp10)
    		# there are many clones, so DEC is not a safe bet
    		basic_machine=pdp10-unknown
    		;;
    	pdp11)
    		basic_machine=pdp11-dec
    		;;
    	we32k)
    		basic_machine=we32k-att
    		;;
    	sh[1234] | sh[24]a | sh[24]aeb | sh[34]eb | sh[1234]le | sh[23]ele)
    		basic_machine=sh-unknown
    		;;
    	sparc | sparcv8 | sparcv9 | sparcv9b | sparcv9v)
    		basic_machine=sparc-sun
    		;;
    	cydra)
    		basic_machine=cydra-cydrome
    		;;
    	orion)
    		basic_machine=orion-highlevel
    		;;
    	orion105)
    		basic_machine=clipper-highlevel
    		;;
    	mac | mpw | mac-mpw)
    		basic_machine=m68k-apple
    		;;
    	pmac | pmac-mpw)
    		basic_machine=powerpc-apple
    		;;
    	*-unknown)
    		# Make sure to match an already-canonicalized machine name.
    		;;
    	*)
    		echo Invalid configuration \`$1\': machine \`$basic_machine\' not recognized 1>&2
    		exit 1
    		;;
    esac
    
    # Here we canonicalize certain aliases for manufacturers.
    case $basic_machine in
    	*-digital*)
    		basic_machine=`echo $basic_machine | sed 's/digital.*/dec/'`
    		;;
    	*-commodore*)
    		basic_machine=`echo $basic_machine | sed 's/commodore.*/cbm/'`
    		;;
    	*)
    		;;
    esac
    
    # Decode manufacturer-specific aliases for certain operating systems.
    
    if [ x"$os" != x"" ]
    then
    case $os in
            # First match some system type aliases
            # that might get confused with valid system types.
    	# -solaris* is a basic system type, with this one exception.
            -auroraux)
    	        os=-auroraux
    		;;
    	-solaris1 | -solaris1.*)
    		os=`echo $os | sed -e 's|solaris1|sunos4|'`
    		;;
    	-solaris)
    		os=-solaris2
    		;;
    	-svr4*)
    		os=-sysv4
    		;;
    	-unixware*)
    		os=-sysv4.2uw
    		;;
    	-gnu/linux*)
    		os=`echo $os | sed -e 's|gnu/linux|linux-gnu|'`
    		;;
    	# First accept the basic system types.
    	# The portable systems comes first.
    	# Each alternative MUST END IN A *, to match a version number.
    	# -sysv* is not here because it comes later, after sysvr4.
    	-gnu* | -bsd* | -mach* | -minix* | -genix* | -ultrix* | -irix* \
    	      | -*vms* | -sco* | -esix* | -isc* | -aix* | -cnk* | -sunos | -sunos[34]*\
    	      | -hpux* | -unos* | -osf* | -luna* | -dgux* | -auroraux* | -solaris* \
    	      | -sym* | -kopensolaris* \
    	      | -amigaos* | -amigados* | -msdos* | -newsos* | -unicos* | -aof* \
    	      | -aos* | -aros* \
    	      | -nindy* | -vxsim* | -vxworks* | -ebmon* | -hms* | -mvs* \
    	      | -clix* | -riscos* | -uniplus* | -iris* | -rtu* | -xenix* \
    	      | -hiux* | -386bsd* | -knetbsd* | -mirbsd* | -netbsd* \
    	      | -openbsd* | -solidbsd* \
    	      | -ekkobsd* | -kfreebsd* | -freebsd* | -riscix* | -lynxos* \
    	      | -bosx* | -nextstep* | -cxux* | -aout* | -elf* | -oabi* \
    	      | -ptx* | -coff* | -ecoff* | -winnt* | -domain* | -vsta* \
    	      | -udi* | -eabi* | -lites* | -ieee* | -go32* | -aux* \
    	      | -chorusos* | -chorusrdb* | -cegcc* \
    	      | -cygwin* | -pe* | -psos* | -moss* | -proelf* | -rtems* \
    	      | -mingw32* | -linux-gnu* | -linux-android* \
    	      | -linux-newlib* | -linux-uclibc* \
    	      | -uxpv* | -beos* | -mpeix* | -udk* \
    	      | -interix* | -uwin* | -mks* | -rhapsody* | -darwin* | -opened* \
    	      | -openstep* | -oskit* | -conix* | -pw32* | -nonstopux* \
    	      | -storm-chaos* | -tops10* | -tenex* | -tops20* | -its* \
    	      | -os2* | -vos* | -palmos* | -uclinux* | -nucleus* \
    	      | -morphos* | -superux* | -rtmk* | -rtmk-nova* | -windiss* \
    	      | -powermax* | -dnix* | -nx6 | -nx7 | -sei* | -dragonfly* \
    	      | -skyos* | -haiku* | -rdos* | -toppers* | -drops* | -es*)
    	# Remember, each alternative MUST END IN *, to match a version number.
    		;;
    	-qnx*)
    		case $basic_machine in
    		    x86-* | i*86-*)
    			;;
    		    *)
    			os=-nto$os
    			;;
    		esac
    		;;
    	-nto-qnx*)
    		;;
    	-nto*)
    		os=`echo $os | sed -e 's|nto|nto-qnx|'`
    		;;
    	-sim | -es1800* | -hms* | -xray | -os68k* | -none* | -v88r* \
    	      | -windows* | -osx | -abug | -netware* | -os9* | -beos* | -haiku* \
    	      | -macos* | -mpw* | -magic* | -mmixware* | -mon960* | -lnews*)
    		;;
    	-mac*)
    		os=`echo $os | sed -e 's|mac|macos|'`
    		;;
    	-linux-dietlibc)
    		os=-linux-dietlibc
    		;;
    	-linux*)
    		os=`echo $os | sed -e 's|linux|linux-gnu|'`
    		;;
    	-sunos5*)
    		os=`echo $os | sed -e 's|sunos5|solaris2|'`
    		;;
    	-sunos6*)
    		os=`echo $os | sed -e 's|sunos6|solaris3|'`
    		;;
    	-opened*)
    		os=-openedition
    		;;
            -os400*)
    		os=-os400
    		;;
    	-wince*)
    		os=-wince
    		;;
    	-osfrose*)
    		os=-osfrose
    		;;
    	-osf*)
    		os=-osf
    		;;
    	-utek*)
    		os=-bsd
    		;;
    	-dynix*)
    		os=-bsd
    		;;
    	-acis*)
    		os=-aos
    		;;
    	-atheos*)
    		os=-atheos
    		;;
    	-syllable*)
    		os=-syllable
    		;;
    	-386bsd)
    		os=-bsd
    		;;
    	-ctix* | -uts*)
    		os=-sysv
    		;;
    	-nova*)
    		os=-rtmk-nova
    		;;
    	-ns2 )
    		os=-nextstep2
    		;;
    	-nsk*)
    		os=-nsk
    		;;
    	# Preserve the version number of sinix5.
    	-sinix5.*)
    		os=`echo $os | sed -e 's|sinix|sysv|'`
    		;;
    	-sinix*)
    		os=-sysv4
    		;;
            -tpf*)
    		os=-tpf
    		;;
    	-triton*)
    		os=-sysv3
    		;;
    	-oss*)
    		os=-sysv3
    		;;
    	-svr4)
    		os=-sysv4
    		;;
    	-svr3)
    		os=-sysv3
    		;;
    	-sysvr4)
    		os=-sysv4
    		;;
    	# This must come after -sysvr4.
    	-sysv*)
    		;;
    	-ose*)
    		os=-ose
    		;;
    	-es1800*)
    		os=-ose
    		;;
    	-xenix)
    		os=-xenix
    		;;
    	-*mint | -mint[0-9]* | -*MiNT | -MiNT[0-9]*)
    		os=-mint
    		;;
    	-aros*)
    		os=-aros
    		;;
    	-kaos*)
    		os=-kaos
    		;;
    	-zvmoe)
    		os=-zvmoe
    		;;
    	-dicos*)
    		os=-dicos
    		;;
            -nacl*)
    	        ;;
    	-none)
    		;;
    	*)
    		# Get rid of the `-' at the beginning of $os.
    		os=`echo $os | sed 's/[^-]*-//'`
    		echo Invalid configuration \`$1\': system \`$os\' not recognized 1>&2
    		exit 1
    		;;
    esac
    else
    
    # Here we handle the default operating systems that come with various machines.
    # The value should be what the vendor currently ships out the door with their
    # machine or put another way, the most popular os provided with the machine.
    
    # Note that if you're going to try to match "-MANUFACTURER" here (say,
    # "-sun"), then you have to tell the case statement up towards the top
    # that MANUFACTURER isn't an operating system.  Otherwise, code above
    # will signal an error saying that MANUFACTURER isn't an operating
    # system, and we'll never get to this point.
    
    case $basic_machine in
            score-*)
    		os=-elf
    		;;
            spu-*)
    		os=-elf
    		;;
    	*-acorn)
    		os=-riscix1.2
    		;;
    	arm*-rebel)
    		os=-linux
    		;;
    	arm*-semi)
    		os=-aout
    		;;
            c4x-* | tic4x-*)
            	os=-coff
    		;;
    	tic54x-*)
    		os=-coff
    		;;
    	tic55x-*)
    		os=-coff
    		;;
    	tic6x-*)
    		os=-coff
    		;;
    	# This must come before the *-dec entry.
    	pdp10-*)
    		os=-tops20
    		;;
    	pdp11-*)
    		os=-none
    		;;
    	*-dec | vax-*)
    		os=-ultrix4.2
    		;;
    	m68*-apollo)
    		os=-domain
    		;;
    	i386-sun)
    		os=-sunos4.0.2
    		;;
    	m68000-sun)
    		os=-sunos3
    		# This also exists in the configure program, but was not the
    		# default.
    		# os=-sunos4
    		;;
    	m68*-cisco)
    		os=-aout
    		;;
            mep-*)
    		os=-elf
    		;;
    	mips*-cisco)
    		os=-elf
    		;;
    	mips*-*)
    		os=-elf
    		;;
    	or32-*)
    		os=-coff
    		;;
    	*-tti)	# must be before sparc entry or we get the wrong os.
    		os=-sysv3
    		;;
    	sparc-* | *-sun)
    		os=-sunos4.1.1
    		;;
    	*-be)
    		os=-beos
    		;;
    	*-haiku)
    		os=-haiku
    		;;
    	*-ibm)
    		os=-aix
    		;;
        	*-knuth)
    		os=-mmixware
    		;;
    	*-wec)
    		os=-proelf
    		;;
    	*-winbond)
    		os=-proelf
    		;;
    	*-oki)
    		os=-proelf
    		;;
    	*-hp)
    		os=-hpux
    		;;
    	*-hitachi)
    		os=-hiux
    		;;
    	i860-* | *-att | *-ncr | *-altos | *-motorola | *-convergent)
    		os=-sysv
    		;;
    	*-cbm)
    		os=-amigaos
    		;;
    	*-dg)
    		os=-dgux
    		;;
    	*-dolphin)
    		os=-sysv3
    		;;
    	m68k-ccur)
    		os=-rtu
    		;;
    	m88k-omron*)
    		os=-luna
    		;;
    	*-next )
    		os=-nextstep
    		;;
    	*-sequent)
    		os=-ptx
    		;;
    	*-crds)
    		os=-unos
    		;;
    	*-ns)
    		os=-genix
    		;;
    	i370-*)
    		os=-mvs
    		;;
    	*-next)
    		os=-nextstep3
    		;;
    	*-gould)
    		os=-sysv
    		;;
    	*-highlevel)
    		os=-bsd
    		;;
    	*-encore)
    		os=-bsd
    		;;
    	*-sgi)
    		os=-irix
    		;;
    	*-siemens)
    		os=-sysv4
    		;;
    	*-masscomp)
    		os=-rtu
    		;;
    	f30[01]-fujitsu | f700-fujitsu)
    		os=-uxpv
    		;;
    	*-rom68k)
    		os=-coff
    		;;
    	*-*bug)
    		os=-coff
    		;;
    	*-apple)
    		os=-macos
    		;;
    	*-atari*)
    		os=-mint
    		;;
    	*)
    		os=-none
    		;;
    esac
    fi
    
    # Here we handle the case where we know the os, and the CPU type, but not the
    # manufacturer.  We pick the logical manufacturer.
    vendor=unknown
    case $basic_machine in
    	*-unknown)
    		case $os in
    			-riscix*)
    				vendor=acorn
    				;;
    			-sunos*)
    				vendor=sun
    				;;
    			-cnk*|-aix*)
    				vendor=ibm
    				;;
    			-beos*)
    				vendor=be
    				;;
    			-hpux*)
    				vendor=hp
    				;;
    			-mpeix*)
    				vendor=hp
    				;;
    			-hiux*)
    				vendor=hitachi
    				;;
    			-unos*)
    				vendor=crds
    				;;
    			-dgux*)
    				vendor=dg
    				;;
    			-luna*)
    				vendor=omron
    				;;
    			-genix*)
    				vendor=ns
    				;;
    			-mvs* | -opened*)
    				vendor=ibm
    				;;
    			-os400*)
    				vendor=ibm
    				;;
    			-ptx*)
    				vendor=sequent
    				;;
    			-tpf*)
    				vendor=ibm
    				;;
    			-vxsim* | -vxworks* | -windiss*)
    				vendor=wrs
    				;;
    			-aux*)
    				vendor=apple
    				;;
    			-hms*)
    				vendor=hitachi
    				;;
    			-mpw* | -macos*)
    				vendor=apple
    				;;
    			-*mint | -mint[0-9]* | -*MiNT | -MiNT[0-9]*)
    				vendor=atari
    				;;
    			-vos*)
    				vendor=stratus
    				;;
    		esac
    		basic_machine=`echo $basic_machine | sed "s/unknown/$vendor/"`
    		;;
    esac
    
    echo $basic_machine$os
    exit
    
    # Local variables:
    # eval: (add-hook 'write-file-hooks 'time-stamp)
    # time-stamp-start: "timestamp='"
    # time-stamp-format: "%:y-%02m-%02d"
    # time-stamp-end: "'"
    # End:
    healpy-1.8.1/cfitsio/drvrnet.c0000654000175000017530000021322712272000775016714 0ustar  zoncaplanck00000000000000/*  This file, drvrhttp.c contains driver routines for http, ftp and root 
        files. */
    
    /* This file was written by Bruce O'Neel at the ISDC, Switzerland          */
    /*  The FITSIO software is maintained by William Pence at the High Energy  */
    /*  Astrophysic Science Archive Research Center (HEASARC) at the NASA      */
    /*  Goddard Space Flight Center.                                           */
    
    
    /* Notes on the drivers:
    
       The ftp driver uses passive mode exclusivly.  If your remote system can't 
       deal with passive mode then it'll fail.  Since Netscape Navigator uses 
       passive mode as well there shouldn't be too many ftp servers which have
       problems.
    
    
       The http driver works properly with 301 and 302 redirects.  For many more 
       gory details see http://www.w3c.org/Protocols/rfc2068/rfc2068.  The only
       catch to the 301/302 redirects is that they have to redirect to another 
       http:// url.  If not, things would have to change a lot in cfitsio and this
       was thought to be too difficult.
       
       Redirects look like
    
    
       
       301 Moved Permanently
       
       

    Moved Permanently

    The document has moved here.

    This redirect was from apache 1.2.5 but most of the other servers produce something very similiar. The parser for the redirects finds the first anchor tag in the body and goes there. If that wasn't what was intended by the remote system then hopefully the error stack, which includes notes about the redirect will help the user fix the problem. Root protocal doesn't have any real docs, so, the emperical docs are as follows. First, you must use a slightly modified rootd server. The modifications include implimentation of the stat command which returns the size of the remote file. Without that it's impossible for cfitsio to work properly since fitsfiles don't include any information about the size of the files in the headers. The rootd server closes the connections on any errors, including reading beyond the end of the file or seeking beyond the end of the file. The rootd:// driver doesn't reopen a closed connection, if the connection is closed you're pretty much done. The messages are of the form All binary information is transfered in network format, so use htonl and ntohl to convert back and forth. :== 4 byte length, in network format, the len doesn't include the length of :== one of the message opcodes below, 4 bytes, network format :== depends on opcode The response is of the same form with the same opcode sent. Success is indicated by being 0. Root is a NFSish protocol where each read/write includes the byte offset to read or write to. As a result, seeks will always succeed in the driver even if they would cause a fatal error when you try to read because you're beyond the end of the file. There is file locking on the host such that you need to possibly create /usr/tmp/rootdtab on the host system. There is one file per socket connection, though the rootd daemon can support multiple files open at once. The messages are sent in the following order: ROOTD_USER - user name, is the user name, trailing null is sent though it's not required it seems. A ROOTD_AUTH message is returned with any sort of error meaning that the user name is wrong. ROOTD_PASS - password, ones complemented, stored in . Once again the trailing null is sent. Once again a ROOTD_AUTH message is returned ROOTD_OPEN - includes filename and one of {create|update|read} as the file mode. ~ seems to be dealt with as the username's login directory. A ROOTD_OPEN message is returned. Once the file is opened any of the following can be sent: ROOTD_STAT - file status and size returns a message where is the file length in bytes ROOTD_FLUSH - flushes the file, not sure this has any real effect on the daemon since the daemon uses open/read/write/close rather than the buffered fopen/fread/fwrite/fclose. ROOTD_GET - on send includes a text message of offset and length to get. Return is a status message first with a status value, then, the raw bytes for the length that you requested. It's an error to seek or read past the end of the file, and, the rootd daemon exits and won't respond anymore. Ie, don't do this. ROOTD_PUT - on send includes a text message of offset and length to put. Then send the raw bytes you want to write. Then recieve a status message When you are finished then you send the message: ROOTD_CLOSE - closes the file Once the file is closed then the socket is closed. Revision 1.56 2000/01/04 11:58:31 oneel Updates so that compressed network files are dealt with regardless of their file names and/or mime types. Revision 1.55 2000/01/04 10:52:40 oneel cfitsio 2.034 Revision 1.51 1999/08/10 12:13:40 oneel Make the http code a bit less picky about the types of files it uncompresses. Now it also uncompresses files which end in .Z or .gz. Revision 1.50 1999/08/04 12:38:46 oneel Don's 2.0.32 patch with dal 1.3 Revision 1.39 1998/12/02 15:31:33 oneel Updates to drvrnet.c so that less compiler warnings would be generated. Fixes the signal handling. Revision 1.38 1998/11/23 10:03:24 oneel Added in a useragent string, as suggested by: Tim Kimball · Data Systems Division ¦ kimball@stsci.edu · 410-338-4417 Space Telescope Science Institute ¦ http://www.stsci.edu/~kimball/ 3700 San Martin Drive ¦ http://archive.stsci.edu/ Baltimore MD 21218 USA ¦ http://faxafloi.stsci.edu:4547/ */ #ifdef HAVE_NET_SERVICES #include #include #include #include #include #include #include #include #include #include #include #if defined(unix) || defined(__unix__) || defined(__unix) #include #endif #include #include #include "fitsio2.h" static jmp_buf env; /* holds the jump buffer for setjmp/longjmp pairs */ static void signal_handler(int sig); /* Network routine error codes */ #define NET_OK 0 #define NOT_INET_ADDRESS -1000 #define UNKNOWN_INET_HOST -1001 #define CONNECTION_ERROR -1002 /* Network routine constants */ #define NET_DEFAULT 0 #define NET_OOB 1 #define NET_PEEK 2 #define NETTIMEOUT 180 /* in secs */ /* local defines and variables */ #define MAXLEN 1200 #define SHORTLEN 100 static char netoutfile[MAXLEN]; #define ROOTD_USER 2000 /*user id follows */ #define ROOTD_PASS 2001 /*passwd follows */ #define ROOTD_AUTH 2002 /*authorization status (to client) */ #define ROOTD_FSTAT 2003 /*filename follows */ #define ROOTD_OPEN 2004 /*filename follows + mode */ #define ROOTD_PUT 2005 /*offset, number of bytes and buffer */ #define ROOTD_GET 2006 /*offset, number of bytes */ #define ROOTD_FLUSH 2007 /*flush file */ #define ROOTD_CLOSE 2008 /*close file */ #define ROOTD_STAT 2009 /*return rootd statistics */ #define ROOTD_ACK 2010 /*acknowledgement (all OK) */ #define ROOTD_ERR 2011 /*error code and message follow */ typedef struct /* structure containing disk file structure */ { int sock; LONGLONG currentpos; } rootdriver; static rootdriver handleTable[NMAXFILES]; /* allocate diskfile handle tables */ /* static prototypes */ static int NET_TcpConnect(char *hostname, int port); static int NET_SendRaw(int sock, const void *buf, int length, int opt); static int NET_RecvRaw(int sock, void *buffer, int length); static int NET_ParseUrl(const char *url, char *proto, char *host, int *port, char *fn); static int CreateSocketAddress(struct sockaddr_in *sockaddrPtr, char *host,int port); static int ftp_status(FILE *ftp, char *statusstr); static int http_open_network(char *url, FILE **httpfile, char *contentencoding, int *contentlength); static int ftp_open_network(char *url, FILE **ftpfile, FILE **command, int *sock); static int root_send_buffer(int sock, int op, char *buffer, int buflen); static int root_recv_buffer(int sock, int *op, char *buffer,int buflen); static int root_openfile(char *filename, char *rwmode, int *sock); static int encode64(unsigned s_len, char *src, unsigned d_len, char *dst); /***************************/ /* Static variables */ static int closehttpfile; static int closememfile; static int closefdiskfile; static int closediskfile; static int closefile; static int closeoutfile; static int closecommandfile; static int closeftpfile; static FILE *diskfile; static FILE *outfile; /*--------------------------------------------------------------------------*/ /* This creates a memory file handle with a copy of the URL in filename. The file is uncompressed if necessary */ int http_open(char *filename, int rwmode, int *handle) { FILE *httpfile; char contentencoding[SHORTLEN]; char newfilename[MAXLEN]; char errorstr[MAXLEN]; char recbuf[MAXLEN]; long len; int contentlength; int status; char firstchar; closehttpfile = 0; closememfile = 0; /* don't do r/w files */ if (rwmode != 0) { ffpmsg("Can't open http:// type file with READWRITE access"); ffpmsg(" Specify an outfile for r/w access (http_open)"); goto error; } /* do the signal handler bits */ if (setjmp(env) != 0) { /* feels like the second time */ /* this means something bad happened */ ffpmsg("Timeout (http_open)"); goto error; } (void) signal(SIGALRM, signal_handler); /* Open the network connection */ /* Does the file have a .Z or .gz in it */ /* Also, if file has a '?' in it (probably cgi script) */ if (strstr(filename,".Z") || strstr(filename,".gz") || strstr(filename,"?")) { alarm(NETTIMEOUT); if (http_open_network(filename,&httpfile,contentencoding, &contentlength)) { alarm(0); ffpmsg("Unable to open http file (http_open):"); ffpmsg(filename); goto error; } } else { if (strlen(filename) >= MAXLEN - 4) { ffpmsg("http file name is too long (http_open)"); ffpmsg(filename); goto error; } alarm(NETTIMEOUT); /* Try the .gz one */ strcpy(newfilename,filename); strcat(newfilename,".gz"); if (http_open_network(newfilename,&httpfile,contentencoding, &contentlength)) { alarm(0); /* Now the .Z one */ strcpy(newfilename,filename); strcat(newfilename,".Z"); alarm(NETTIMEOUT); if (http_open_network(newfilename,&httpfile,contentencoding, &contentlength)) { alarm(0); alarm(NETTIMEOUT); if (http_open_network(filename,&httpfile,contentencoding, &contentlength)) { alarm(0); ffpmsg("Unable to open http file (http_open)"); ffpmsg(filename); goto error; } } } } closehttpfile++; /* Create the memory file */ if ((status = mem_create(filename,handle))) { ffpmsg("Unable to create memory file (http_open)"); goto error; } closememfile++; /* Now, what do we do with the file */ /* Check to see what the first character is */ firstchar = fgetc(httpfile); ungetc(firstchar,httpfile); if (!strcmp(contentencoding,"x-gzip") || !strcmp(contentencoding,"x-compress") || strstr(filename,".gz") || strstr(filename,".Z") || ('\037' == firstchar)) { /* do the compress dance, which is the same as the gzip dance */ /* Using the cfitsio routine */ status = 0; /* Ok, this is a tough case, let's be arbritary and say 10*NETTIMEOUT, Given the choices for nettimeout above they'll probaby ^C before, but it's always worth a shot*/ alarm(NETTIMEOUT*10); status = mem_uncompress2mem(filename, httpfile, *handle); alarm(0); if (status) { ffpmsg("Error writing compressed memory file (http_open)"); ffpmsg(filename); goto error; } } else { /* It's not compressed, bad choice, but we'll copy it anyway */ if (contentlength % 2880) { sprintf(errorstr,"Content-Length not a multiple of 2880 (http_open) %d", contentlength); ffpmsg(errorstr); } /* write a memory file */ alarm(NETTIMEOUT); while(0 != (len = fread(recbuf,1,MAXLEN,httpfile))) { alarm(0); /* cancel alarm */ status = mem_write(*handle,recbuf,len); if (status) { ffpmsg("Error copying http file into memory (http_open)"); ffpmsg(filename); goto error; } alarm(NETTIMEOUT); /* rearm the alarm */ } } fclose(httpfile); signal(SIGALRM, SIG_DFL); alarm(0); return mem_seek(*handle,0); error: alarm(0); /* clear it */ if (closehttpfile) { fclose(httpfile); } if (closememfile) { mem_close_free(*handle); } signal(SIGALRM, SIG_DFL); return (FILE_NOT_OPENED); } /*--------------------------------------------------------------------------*/ /* This creates a memory file handle with a copy of the URL in filename. The file must be compressed and is copied (still compressed) to disk first. The compressed disk file is then uncompressed into memory (READONLY). */ int http_compress_open(char *url, int rwmode, int *handle) { FILE *httpfile; char contentencoding[SHORTLEN]; char recbuf[MAXLEN]; long len; int contentlength; int ii, flen, status; char firstchar; closehttpfile = 0; closediskfile = 0; closefdiskfile = 0; closememfile = 0; /* cfileio made a mistake, should set the netoufile first otherwise we don't know where to write the output file */ flen = strlen(netoutfile); if (!flen) { ffpmsg ("Output file not set, shouldn't have happened (http_compress_open)"); goto error; } if (rwmode != 0) { ffpmsg("Can't open compressed http:// type file with READWRITE access"); ffpmsg(" Specify an UNCOMPRESSED outfile (http_compress_open)"); goto error; } /* do the signal handler bits */ if (setjmp(env) != 0) { /* feels like the second time */ /* this means something bad happened */ ffpmsg("Timeout (http_open)"); goto error; } signal(SIGALRM, signal_handler); /* Open the http connectin */ alarm(NETTIMEOUT); if ((status = http_open_network(url,&httpfile,contentencoding, &contentlength))) { alarm(0); ffpmsg("Unable to open http file (http_compress_open)"); ffpmsg(url); goto error; } closehttpfile++; /* Better be compressed */ firstchar = fgetc(httpfile); ungetc(firstchar,httpfile); if (!strcmp(contentencoding,"x-gzip") || !strcmp(contentencoding,"x-compress") || ('\037' == firstchar)) { if (*netoutfile == '!') { /* user wants to clobber file, if it already exists */ for (ii = 0; ii < flen; ii++) netoutfile[ii] = netoutfile[ii + 1]; /* remove '!' */ status = file_remove(netoutfile); } /* Create the new file */ if ((status = file_create(netoutfile,handle))) { ffpmsg("Unable to create output disk file (http_compress_open):"); ffpmsg(netoutfile); goto error; } closediskfile++; /* write a file */ alarm(NETTIMEOUT); while(0 != (len = fread(recbuf,1,MAXLEN,httpfile))) { alarm(0); status = file_write(*handle,recbuf,len); if (status) { ffpmsg("Error writing disk file (http_compres_open)"); ffpmsg(netoutfile); goto error; } alarm(NETTIMEOUT); } file_close(*handle); fclose(httpfile); closehttpfile--; closediskfile--; /* File is on disk, let's uncompress it into memory */ if (NULL == (diskfile = fopen(netoutfile,"r"))) { ffpmsg("Unable to reopen disk file (http_compress_open)"); ffpmsg(netoutfile); goto error; } closefdiskfile++; /* Create the memory handle to hold it */ if ((status = mem_create(url,handle))) { ffpmsg("Unable to create memory file (http_compress_open)"); goto error; } closememfile++; /* Uncompress it */ status = 0; status = mem_uncompress2mem(url,diskfile,*handle); fclose(diskfile); closefdiskfile--; if (status) { ffpmsg("Error uncompressing disk file to memory (http_compress_open)"); ffpmsg(netoutfile); goto error; } } else { /* Opps, this should not have happened */ ffpmsg("Can only have compressed files here (http_compress_open)"); goto error; } signal(SIGALRM, SIG_DFL); alarm(0); return mem_seek(*handle,0); error: alarm(0); /* clear it */ if (closehttpfile) { fclose(httpfile); } if (closefdiskfile) { fclose(diskfile); } if (closememfile) { mem_close_free(*handle); } if (closediskfile) { file_close(*handle); } signal(SIGALRM, SIG_DFL); return (FILE_NOT_OPENED); } /*--------------------------------------------------------------------------*/ /* This creates a file handle with a copy of the URL in filename. The http file is copied to disk first. If it's compressed then it is uncompressed when copying to the disk */ int http_file_open(char *url, int rwmode, int *handle) { FILE *httpfile; char contentencoding[SHORTLEN]; char errorstr[MAXLEN]; char recbuf[MAXLEN]; long len; int contentlength; int ii, flen, status; char firstchar; /* Check if output file is actually a memory file */ if (!strncmp(netoutfile, "mem:", 4) ) { /* allow the memory file to be opened with write access */ return( http_open(url, READONLY, handle) ); } closehttpfile = 0; closefile = 0; closeoutfile = 0; /* cfileio made a mistake, we need to know where to write the file */ flen = strlen(netoutfile); if (!flen) { ffpmsg("Output file not set, shouldn't have happened (http_file_open)"); return (FILE_NOT_OPENED); } /* do the signal handler bits */ if (setjmp(env) != 0) { /* feels like the second time */ /* this means something bad happened */ ffpmsg("Timeout (http_open)"); goto error; } signal(SIGALRM, signal_handler); /* Open the network connection */ alarm(NETTIMEOUT); if ((status = http_open_network(url,&httpfile,contentencoding, &contentlength))) { alarm(0); ffpmsg("Unable to open http file (http_file_open)"); ffpmsg(url); goto error; } closehttpfile++; if (*netoutfile == '!') { /* user wants to clobber disk file, if it already exists */ for (ii = 0; ii < flen; ii++) netoutfile[ii] = netoutfile[ii + 1]; /* remove '!' */ status = file_remove(netoutfile); } firstchar = fgetc(httpfile); ungetc(firstchar,httpfile); if (!strcmp(contentencoding,"x-gzip") || !strcmp(contentencoding,"x-compress") || ('\037' == firstchar)) { /* to make this more cfitsioish we use the file driver calls to create the disk file */ /* Create the output file */ if ((status = file_create(netoutfile,handle))) { ffpmsg("Unable to create output file (http_file_open)"); ffpmsg(netoutfile); goto error; } file_close(*handle); if (NULL == (outfile = fopen(netoutfile,"w"))) { ffpmsg("Unable to reopen the output file (http_file_open)"); ffpmsg(netoutfile); goto error; } closeoutfile++; status = 0; /* Ok, this is a tough case, let's be arbritary and say 10*NETTIMEOUT, Given the choices for nettimeout above they'll probaby ^C before, but it's always worth a shot*/ alarm(NETTIMEOUT*10); status = uncompress2file(url,httpfile,outfile,&status); alarm(0); if (status) { ffpmsg("Error uncompressing http file to disk file (http_file_open)"); ffpmsg(url); ffpmsg(netoutfile); goto error; } fclose(outfile); closeoutfile--; } else { /* Create the output file */ if ((status = file_create(netoutfile,handle))) { ffpmsg("Unable to create output file (http_file_open)"); ffpmsg(netoutfile); goto error; } /* Give a warning message. This could just be bad padding at the end so don't treat it like an error. */ closefile++; if (contentlength % 2880) { sprintf(errorstr, "Content-Length not a multiple of 2880 (http_file_open) %d", contentlength); ffpmsg(errorstr); } /* write a file */ alarm(NETTIMEOUT); while(0 != (len = fread(recbuf,1,MAXLEN,httpfile))) { alarm(0); status = file_write(*handle,recbuf,len); if (status) { ffpmsg("Error copying http file to disk file (http_file_open)"); ffpmsg(url); ffpmsg(netoutfile); goto error; } } file_close(*handle); closefile--; } fclose(httpfile); closehttpfile--; signal(SIGALRM, SIG_DFL); alarm(0); return file_open(netoutfile,rwmode,handle); error: alarm(0); /* clear it */ if (closehttpfile) { fclose(httpfile); } if (closeoutfile) { fclose(outfile); } if (closefile) { file_close(*handle); } signal(SIGALRM, SIG_DFL); return (FILE_NOT_OPENED); } /*--------------------------------------------------------------------------*/ /* This is the guts of the code to get a file via http. url is the input url httpfile is set to be the file connected to the socket which you can read the file from contentencoding is the mime type of the file, returned if the http server returns it contentlength is the lenght of the file, returned if the http server returns it */ static int http_open_network(char *url, FILE **httpfile, char *contentencoding, int *contentlength) { int status; int sock; int tmpint; char recbuf[MAXLEN]; char tmpstr[MAXLEN]; char tmpstr1[SHORTLEN]; char tmpstr2[MAXLEN]; char errorstr[MAXLEN]; char proto[SHORTLEN]; char host[SHORTLEN]; char userpass[MAXLEN]; char fn[MAXLEN]; char turl[MAXLEN]; char *scratchstr; int port; float version; char pproto[SHORTLEN]; char phost[SHORTLEN]; /* address of the proxy server */ int pport; /* port number of the proxy server */ char pfn[MAXLEN]; char *proxy; /* URL of the proxy server */ /* Parse the URL apart again */ strcpy(turl,"http://"); strncat(turl,url,MAXLEN - 8); if (NET_ParseUrl(turl,proto,host,&port,fn)) { sprintf(errorstr,"URL Parse Error (http_open) %s",url); ffpmsg(errorstr); return (FILE_NOT_OPENED); } /* Do we have a user:password combo ? */ strcpy(userpass, url); if ((scratchstr = strchr(userpass, '@')) != NULL) { *scratchstr = '\0'; } else strcpy(userpass, ""); /* Ph. Prugniel 2003/04/03 Are we using a proxy? We use a proxy if the environment variable "http_proxy" is set to an address, eg. http://wwwcache.nottingham.ac.uk:3128 ("http_proxy" is also used by wget) */ proxy = getenv("http_proxy"); /* Connect to the remote host */ if (proxy) { if (NET_ParseUrl(proxy,pproto,phost,&pport,pfn)) { sprintf(errorstr,"URL Parse Error (http_open) %s",proxy); ffpmsg(errorstr); return (FILE_NOT_OPENED); } sock = NET_TcpConnect(phost,pport); } else sock = NET_TcpConnect(host,port); if (sock < 0) { if (proxy) { ffpmsg("Couldn't connect to host via proxy server (http_open_network)"); ffpmsg(proxy); } return (FILE_NOT_OPENED); } /* Make the socket a stdio file */ if (NULL == (*httpfile = fdopen(sock,"r"))) { ffpmsg ("fdopen failed to convert socket to file (http_open_network)"); close(sock); return (FILE_NOT_OPENED); } /* Send the GET request to the remote server */ /* Ph. Prugniel 2003/04/03 One must add the Host: command because of HTTP 1.1 servers (ie. virtual hosts) */ if (proxy) sprintf(tmpstr,"GET http://%s:%-d%s HTTP/1.0\r\n",host,port,fn); else sprintf(tmpstr,"GET %s HTTP/1.0\r\n",fn); if (strcmp(userpass, "")) { encode64(strlen(userpass), userpass, MAXLEN, tmpstr2); sprintf(tmpstr1, "Authorization: Basic %s\r\n", tmpstr2); if (strlen(tmpstr) + strlen(tmpstr1) > MAXLEN - 1) return (FILE_NOT_OPENED); strcat(tmpstr,tmpstr1); } sprintf(tmpstr1,"User-Agent: HEASARC/CFITSIO/%-8.3f\r\n",ffvers(&version)); if (strlen(tmpstr) + strlen(tmpstr1) > MAXLEN - 1) return (FILE_NOT_OPENED); strcat(tmpstr,tmpstr1); /* HTTP 1.1 servers require the following 'Host: ' string */ sprintf(tmpstr1,"Host: %s:%-d\r\n\r\n",host,port); if (strlen(tmpstr) + strlen(tmpstr1) > MAXLEN - 1) return (FILE_NOT_OPENED); strcat(tmpstr,tmpstr1); status = NET_SendRaw(sock,tmpstr,strlen(tmpstr),NET_DEFAULT); /* read the header */ if (!(fgets(recbuf,MAXLEN,*httpfile))) { sprintf (errorstr,"http header short (http_open_network) %s",recbuf); ffpmsg(errorstr); fclose(*httpfile); return (FILE_NOT_OPENED); } *contentlength = 0; contentencoding[0] = '\0'; /* Our choices are 200, ok, 301, temporary redirect, or 302 perm redirect */ sscanf(recbuf,"%s %d",tmpstr,&status); if (status != 200){ if (status == 301 || status == 302) { /* got a redirect */ if (status == 301) { ffpmsg("Note: Web server replied with a temporary redirect from"); } else { ffpmsg("Note: Web server replied with a redirect from"); } ffpmsg(turl); /* now, let's not write the most sophisticated parser here */ while (fgets(recbuf,MAXLEN,*httpfile)) { scratchstr = strstr(recbuf," 3) { recbuf[strlen(recbuf)-1] = '\0'; recbuf[strlen(recbuf)-1] = '\0'; } sscanf(recbuf,"%s %d",tmpstr,&tmpint); /* Did we get a content-length header ? */ if (!strcmp(tmpstr,"Content-Length:")) { *contentlength = tmpint; } /* Did we get the content-encoding header ? */ if (!strcmp(tmpstr,"Content-Encoding:")) { if (NULL != (scratchstr = strstr(recbuf,":"))) { /* Found the : */ scratchstr++; /* skip the : */ scratchstr++; /* skip the extra space */ strcpy(contentencoding,scratchstr); } } } /* we're done, so return */ return 0; } /*--------------------------------------------------------------------------*/ /* This creates a memory file handle with a copy of the URL in filename. The file is uncompressed if necessary */ int ftp_open(char *filename, int rwmode, int *handle) { FILE *ftpfile; FILE *command; int sock; char newfilename[MAXLEN]; char recbuf[MAXLEN]; long len; int status; char firstchar; closememfile = 0; closecommandfile = 0; closeftpfile = 0; /* don't do r/w files */ if (rwmode != 0) { ffpmsg("Can't open ftp:// type file with READWRITE access"); ffpmsg("Specify an outfile for r/w access (ftp_open)"); return (FILE_NOT_OPENED); } /* do the signal handler bits */ if (setjmp(env) != 0) { /* feels like the second time */ /* this means something bad happened */ ffpmsg("Timeout (http_open)"); goto error; } signal(SIGALRM, signal_handler); /* Open the ftp connetion. ftpfile is connected to the file port, command is connected to port 21. sock is the socket on port 21 */ if (strlen(filename) > MAXLEN - 4) { ffpmsg("filename too long (ftp_open)"); ffpmsg(filename); goto error; } alarm(NETTIMEOUT); strcpy(newfilename,filename); /* Does the file have a .Z or .gz in it */ if (strstr(newfilename,".Z") || strstr(newfilename,".gz")) { alarm(NETTIMEOUT); if (ftp_open_network(filename,&ftpfile,&command,&sock)) { alarm(0); ffpmsg("Unable to open ftp file (ftp_open)"); ffpmsg(filename); goto error; } } else { /* Try the .gz one */ strcpy(newfilename,filename); strcat(newfilename,".gz"); alarm(NETTIMEOUT); if (ftp_open_network(newfilename,&ftpfile,&command,&sock)) { alarm(0); strcpy(newfilename,filename); strcat(newfilename,".Z"); alarm(NETTIMEOUT); if (ftp_open_network(newfilename,&ftpfile,&command,&sock)) { /* Now as given */ alarm(0); strcpy(newfilename,filename); alarm(NETTIMEOUT); if (ftp_open_network(newfilename,&ftpfile,&command,&sock)) { alarm(0); ffpmsg("Unable to open ftp file (ftp_open)"); ffpmsg(newfilename); goto error; } } } } closeftpfile++; closecommandfile++; /* create the memory file */ if ((status = mem_create(filename,handle))) { ffpmsg ("Could not create memory file to passive port (ftp_open)"); ffpmsg(filename); goto error; } closememfile++; /* This isn't quite right, it'll fail if the file has .gzabc at the end for instance */ /* Decide if the file is compressed */ firstchar = fgetc(ftpfile); ungetc(firstchar,ftpfile); if (strstr(newfilename,".gz") || strstr(newfilename,".Z") || ('\037' == firstchar)) { status = 0; /* A bit arbritary really, the user will probably hit ^C */ alarm(NETTIMEOUT*10); status = mem_uncompress2mem(filename, ftpfile, *handle); alarm(0); if (status) { ffpmsg("Error writing compressed memory file (ftp_open)"); ffpmsg(filename); goto error; } } else { /* write a memory file */ alarm(NETTIMEOUT); while(0 != (len = fread(recbuf,1,MAXLEN,ftpfile))) { alarm(0); status = mem_write(*handle,recbuf,len); if (status) { ffpmsg("Error writing memory file (http_open)"); ffpmsg(filename); goto error; } alarm(NETTIMEOUT); } } /* close and clean up */ fclose(ftpfile); closeftpfile--; NET_SendRaw(sock,"QUIT\n",5,NET_DEFAULT); fclose(command); closecommandfile--; signal(SIGALRM, SIG_DFL); alarm(0); return mem_seek(*handle,0); error: alarm(0); /* clear it */ if (closecommandfile) { fclose(command); } if (closeftpfile) { fclose(ftpfile); } if (closememfile) { mem_close_free(*handle); } signal(SIGALRM, SIG_DFL); return (FILE_NOT_OPENED); } /*--------------------------------------------------------------------------*/ /* This creates a file handle with a copy of the URL in filename. The file must be uncompressed and is copied to disk first */ int ftp_file_open(char *url, int rwmode, int *handle) { FILE *ftpfile; FILE *command; char recbuf[MAXLEN]; long len; int sock; int ii, flen, status; char firstchar; /* Check if output file is actually a memory file */ if (!strncmp(netoutfile, "mem:", 4) ) { /* allow the memory file to be opened with write access */ return( ftp_open(url, READONLY, handle) ); } closeftpfile = 0; closecommandfile = 0; closefile = 0; closeoutfile = 0; /* cfileio made a mistake, need to know where to write the output file */ flen = strlen(netoutfile); if (!flen) { ffpmsg("Output file not set, shouldn't have happened (ftp_file_open)"); return (FILE_NOT_OPENED); } /* do the signal handler bits */ if (setjmp(env) != 0) { /* feels like the second time */ /* this means something bad happened */ ffpmsg("Timeout (http_open)"); goto error; } signal(SIGALRM, signal_handler); /* open the network connection to url. ftpfile holds the connection to the input file, command holds the connection to port 21, and sock is the socket connected to port 21 */ alarm(NETTIMEOUT); if ((status = ftp_open_network(url,&ftpfile,&command,&sock))) { alarm(0); ffpmsg("Unable to open http file (ftp_file_open)"); ffpmsg(url); goto error; } closeftpfile++; closecommandfile++; if (*netoutfile == '!') { /* user wants to clobber file, if it already exists */ for (ii = 0; ii < flen; ii++) netoutfile[ii] = netoutfile[ii + 1]; /* remove '!' */ status = file_remove(netoutfile); } /* Now, what do we do with the file */ firstchar = fgetc(ftpfile); ungetc(firstchar,ftpfile); if (strstr(url,".gz") || strstr(url,".Z") || ('\037' == firstchar)) { /* to make this more cfitsioish we use the file driver calls to create the file */ /* Create the output file */ if ((status = file_create(netoutfile,handle))) { ffpmsg("Unable to create output file (ftp_file_open)"); ffpmsg(netoutfile); goto error; } file_close(*handle); if (NULL == (outfile = fopen(netoutfile,"w"))) { ffpmsg("Unable to reopen the output file (ftp_file_open)"); ffpmsg(netoutfile); goto error; } closeoutfile++; status = 0; /* Ok, this is a tough case, let's be arbritary and say 10*NETTIMEOUT, Given the choices for nettimeout above they'll probaby ^C before, but it's always worth a shot*/ alarm(NETTIMEOUT*10); status = uncompress2file(url,ftpfile,outfile,&status); alarm(0); if (status) { ffpmsg("Unable to uncompress the output file (ftp_file_open)"); ffpmsg(url); ffpmsg(netoutfile); goto error; } fclose(outfile); closeoutfile--; } else { /* Create the output file */ if ((status = file_create(netoutfile,handle))) { ffpmsg("Unable to create output file (ftp_file_open)"); ffpmsg(netoutfile); goto error; } closefile++; /* write a file */ alarm(NETTIMEOUT); while(0 != (len = fread(recbuf,1,MAXLEN,ftpfile))) { alarm(0); status = file_write(*handle,recbuf,len); if (status) { ffpmsg("Error writing file (ftp_file_open)"); ffpmsg(url); ffpmsg(netoutfile); goto error; } alarm(NETTIMEOUT); } file_close(*handle); } fclose(ftpfile); closeftpfile--; NET_SendRaw(sock,"QUIT\n",5,NET_DEFAULT); fclose(command); closecommandfile--; signal(SIGALRM, SIG_DFL); alarm(0); return file_open(netoutfile,rwmode,handle); error: alarm(0); /* clear it */ if (closeftpfile) { fclose(ftpfile); } if (closecommandfile) { fclose(command); } if (closeoutfile) { fclose(outfile); } if (closefile) { file_close(*handle); } signal(SIGALRM, SIG_DFL); return (FILE_NOT_OPENED); } /*--------------------------------------------------------------------------*/ /* This creates a memory handle with a copy of the URL in filename. The file must be compressed and is copied to disk first */ int ftp_compress_open(char *url, int rwmode, int *handle) { FILE *ftpfile; FILE *command; char recbuf[MAXLEN]; long len; int ii, flen, status; int sock; char firstchar; closeftpfile = 0; closecommandfile = 0; closememfile = 0; closefdiskfile = 0; closediskfile = 0; /* don't do r/w files */ if (rwmode != 0) { ffpmsg("Compressed files must be r/o"); return (FILE_NOT_OPENED); } /* Need to know where to write the output file */ flen = strlen(netoutfile); if (!flen) { ffpmsg( "Output file not set, shouldn't have happened (ftp_compress_open)"); return (FILE_NOT_OPENED); } /* do the signal handler bits */ if (setjmp(env) != 0) { /* feels like the second time */ /* this means something bad happened */ ffpmsg("Timeout (http_open)"); goto error; } signal(SIGALRM, signal_handler); /* Open the network connection to url, ftpfile is connected to the file port, command is connected to port 21. sock is for writing to port 21 */ alarm(NETTIMEOUT); if ((status = ftp_open_network(url,&ftpfile,&command,&sock))) { alarm(0); ffpmsg("Unable to open ftp file (ftp_compress_open)"); ffpmsg(url); goto error; } closeftpfile++; closecommandfile++; /* Now, what do we do with the file */ firstchar = fgetc(ftpfile); ungetc(firstchar,ftpfile); if (strstr(url,".gz") || strstr(url,".Z") || ('\037' == firstchar)) { if (*netoutfile == '!') { /* user wants to clobber file, if it already exists */ for (ii = 0; ii < flen; ii++) netoutfile[ii] = netoutfile[ii + 1]; /* remove '!' */ status = file_remove(netoutfile); } /* Create the output file */ if ((status = file_create(netoutfile,handle))) { ffpmsg("Unable to create output file (ftp_compress_open)"); ffpmsg(netoutfile); goto error; } closediskfile++; /* write a file */ alarm(NETTIMEOUT); while(0 != (len = fread(recbuf,1,MAXLEN,ftpfile))) { alarm(0); status = file_write(*handle,recbuf,len); if (status) { ffpmsg("Error writing file (ftp_compres_open)"); ffpmsg(url); ffpmsg(netoutfile); goto error; } alarm(NETTIMEOUT); } file_close(*handle); closediskfile--; fclose(ftpfile); closeftpfile--; /* Close down the ftp connection */ NET_SendRaw(sock,"QUIT\n",5,NET_DEFAULT); fclose(command); closecommandfile--; /* File is on disk, let's uncompress it into memory */ if (NULL == (diskfile = fopen(netoutfile,"r"))) { ffpmsg("Unable to reopen disk file (ftp_compress_open)"); ffpmsg(netoutfile); return (FILE_NOT_OPENED); } closefdiskfile++; if ((status = mem_create(url,handle))) { ffpmsg("Unable to create memory file (ftp_compress_open)"); ffpmsg(url); goto error; } closememfile++; status = 0; status = mem_uncompress2mem(url,diskfile,*handle); fclose(diskfile); closefdiskfile--; if (status) { ffpmsg("Error writing compressed memory file (ftp_compress_open)"); goto error; } } else { /* Opps, this should not have happened */ ffpmsg("Can only compressed files here (ftp_compress_open)"); goto error; } signal(SIGALRM, SIG_DFL); alarm(0); return mem_seek(*handle,0); error: alarm(0); /* clear it */ if (closeftpfile) { fclose(ftpfile); } if (closecommandfile) { fclose(command); } if (closefdiskfile) { fclose(diskfile); } if (closememfile) { mem_close_free(*handle); } if (closediskfile) { file_close(*handle); } signal(SIGALRM, SIG_DFL); return (FILE_NOT_OPENED); } /*--------------------------------------------------------------------------*/ /* Open a ftp connection to filename (really a URL), return ftpfile set to the file connection, and command set to the control connection, with sock also set to the control connection */ int ftp_open_network(char *filename, FILE **ftpfile, FILE **command, int *sock) { int status; int sock1; int tmpint; char recbuf[MAXLEN]; char errorstr[MAXLEN]; char tmpstr[MAXLEN]; char proto[SHORTLEN]; char host[SHORTLEN]; char *newhost; char *username; char *password; char fn[MAXLEN]; char *newfn; char *passive; char *tstr; char ip[SHORTLEN]; char turl[MAXLEN]; int port; /* parse the URL */ if (strlen(filename) > MAXLEN - 7) { ffpmsg("ftp filename is too long (ftp_open)"); return (FILE_NOT_OPENED); } strcpy(turl,"ftp://"); strcat(turl,filename); if (NET_ParseUrl(turl,proto,host,&port,fn)) { sprintf(errorstr,"URL Parse Error (ftp_open) %s",filename); ffpmsg(errorstr); return (FILE_NOT_OPENED); } #ifdef DEBUG printf ("proto, %s, host, %s, port %d, fn %s\n",proto,host,port,fn); #endif port = 21; /* we might have a user name */ username = "anonymous"; password = "user@host.com"; /* is there an @ sign */ if (NULL != (newhost = strrchr(host,'@'))) { *newhost = '\0'; /* make it a null, */ newhost++; /* Now newhost points to the host name and host points to the user name, password combo */ username = host; /* is there a : for a password */ if (NULL != strchr(username,':')) { password = strchr(username,':'); *password = '\0'; password++; } } else { newhost = host; } #ifdef DEBUG printf("User %s pass %s\n",username,password); #endif /* Connect to the host on the required port */ *sock = NET_TcpConnect(newhost,port); /* convert it to a stdio file */ if (NULL == (*command = fdopen(*sock,"r"))) { ffpmsg ("fdopen failed to convert socket to stdio file (ftp_open)"); return (FILE_NOT_OPENED); } /* Wait for the 220 response */ if (ftp_status(*command,"220 ")) { ffpmsg ("error connecting to remote server, no 220 seen (ftp_open)"); fclose(*command); return (FILE_NOT_OPENED); } /* Send the user name and wait for the right response */ sprintf(tmpstr,"USER %s\n",username); status = NET_SendRaw(*sock,tmpstr,strlen(tmpstr),NET_DEFAULT); if (ftp_status(*command,"331 ")) { ffpmsg ("USER error no 331 seen (ftp_open)"); fclose(*command); return (FILE_NOT_OPENED); } /* Send the password and wait for the right response */ sprintf(tmpstr,"PASS %s\n",password); status = NET_SendRaw(*sock,tmpstr,strlen(tmpstr),NET_DEFAULT); if (ftp_status(*command,"230 ")) { ffpmsg ("PASS error, no 230 seen (ftp_open)"); fclose(*command); return (FILE_NOT_OPENED); } /* now do the cwd command */ newfn = strrchr(fn,'/'); if (newfn == NULL) { strcpy(tmpstr,"CWD /\n"); newfn = fn; } else { *newfn = '\0'; newfn++; if (strlen(fn) == 0) { strcpy(tmpstr,"CWD /\n"); } else { /* remove the leading slash */ if (fn[0] == '/') { sprintf(tmpstr,"CWD %s\n",&fn[1]); } else { sprintf(tmpstr,"CWD %s\n",fn); } } } #ifdef DEBUG printf("CWD command is %s\n",tmpstr); #endif status = NET_SendRaw(*sock,tmpstr,strlen(tmpstr),NET_DEFAULT); if (ftp_status(*command,"250 ")) { ffpmsg ("CWD error, no 250 seen (ftp_open)"); fclose(*command); return (FILE_NOT_OPENED); } if (!strlen(newfn)) { ffpmsg("Null file name (ftp_open)"); fclose(*command); return (FILE_NOT_OPENED); } /* Always use binary mode */ sprintf(tmpstr,"TYPE I\n"); status = NET_SendRaw(*sock,tmpstr,strlen(tmpstr),NET_DEFAULT); if (ftp_status(*command,"200 ")) { ffpmsg ("TYPE I error, 200 not seen (ftp_open)"); fclose(*command); return (FILE_NOT_OPENED); } status = NET_SendRaw(*sock,"PASV\n",5,NET_DEFAULT); if (!(fgets(recbuf,MAXLEN,*command))) { ffpmsg ("PASV error (ftp_open)"); fclose(*command); return (FILE_NOT_OPENED); } /* Passive mode response looks like 227 Entering Passive Mode (129,194,67,8,210,80) */ if (recbuf[0] == '2' && recbuf[1] == '2' && recbuf[2] == '7') { /* got a good passive mode response, find the opening ( */ if (!(passive = strchr(recbuf,'('))) { ffpmsg ("PASV error (ftp_open)"); fclose(*command); return (FILE_NOT_OPENED); } *passive = '\0'; passive++; ip[0] = '\0'; /* Messy parsing of response from PASV *command */ if (!(tstr = strtok(passive,",)"))) { ffpmsg ("PASV error (ftp_open)"); fclose(*command); return (FILE_NOT_OPENED); } strcpy(ip,tstr); strcat(ip,"."); if (!(tstr = strtok(NULL,",)"))) { ffpmsg ("PASV error (ftp_open)"); fclose(*command); return (FILE_NOT_OPENED); } strcat(ip,tstr); strcat(ip,"."); if (!(tstr = strtok(NULL,",)"))) { ffpmsg ("PASV error (ftp_open)"); fclose(*command); return (FILE_NOT_OPENED); } strcat(ip,tstr); strcat(ip,"."); if (!(tstr = strtok(NULL,",)"))) { ffpmsg ("PASV error (ftp_open)"); fclose(*command); return (FILE_NOT_OPENED); } strcat(ip,tstr); /* Done the ip number, now do the port # */ if (!(tstr = strtok(NULL,",)"))) { ffpmsg ("PASV error (ftp_open)"); fclose(*command); return (FILE_NOT_OPENED); } sscanf(tstr,"%d",&port); port *= 256; if (!(tstr = strtok(NULL,",)"))) { ffpmsg ("PASV error (ftp_open)"); fclose(*command); return (FILE_NOT_OPENED); } sscanf(tstr,"%d",&tmpint); port += tmpint; if (!strlen(newfn)) { ffpmsg("Null file name (ftp_open)"); fclose(*command); return (FILE_NOT_OPENED); } #ifdef DEBUG puts("connection to passive port"); #endif /* COnnect to the data port */ sock1 = NET_TcpConnect(ip,port); if (NULL == (*ftpfile = fdopen(sock1,"r"))) { ffpmsg ("Could not connect to passive port (ftp_open)"); fclose(*command); return (FILE_NOT_OPENED); } /* now we return */ /* Send the retrieve command */ sprintf(tmpstr,"RETR %s\n",newfn); status = NET_SendRaw(*sock,tmpstr,strlen(tmpstr),NET_DEFAULT); #ifdef DEBUG puts("Sent RETR command"); #endif if (ftp_status(*command,"150 ")) { /* ffpmsg ("RETR error, most likely file is not there (ftp_open)"); */ fclose(*command); #ifdef DEBUG puts("File not there"); #endif return (FILE_NOT_OPENED); } return 0; } /* no passive mode */ NET_SendRaw(*sock,"QUIT\n",5,NET_DEFAULT); fclose(*command); return (FILE_NOT_OPENED); } /*--------------------------------------------------------------------------*/ /* return a socket which results from connection to hostname on port port */ static int NET_TcpConnect(char *hostname, int port) { /* Connect to hostname on port */ struct sockaddr_in sockaddr; int sock; int stat; int val = 1; CreateSocketAddress(&sockaddr,hostname,port); /* Create socket */ if ((sock = socket(AF_INET, SOCK_STREAM, 0)) < 0) { ffpmsg("Can't create socket"); return CONNECTION_ERROR; } if ((stat = connect(sock, (struct sockaddr*) &sockaddr, sizeof(sockaddr))) < 0) { close(sock); /* perror("NET_Tcpconnect - Connection error"); ffpmsg("Can't connect to host, connection error"); */ return CONNECTION_ERROR; } setsockopt(sock, IPPROTO_TCP, TCP_NODELAY, (char *)&val, sizeof(val)); setsockopt(sock, SOL_SOCKET, SO_KEEPALIVE, (char *)&val, sizeof(val)); val = 65536; setsockopt(sock, SOL_SOCKET, SO_SNDBUF, (char *)&val, sizeof(val)); setsockopt(sock, SOL_SOCKET, SO_RCVBUF, (char *)&val, sizeof(val)); return sock; } /*--------------------------------------------------------------------------*/ /* Write len bytes from buffer to socket sock */ static int NET_SendRaw(int sock, const void *buffer, int length, int opt) { char * buf = (char *) buffer; int flag; int n, nsent = 0; switch (opt) { case NET_DEFAULT: flag = 0; break; case NET_OOB: flag = MSG_OOB; break; case NET_PEEK: default: flag = 0; break; } if (sock < 0) return -1; for (n = 0; n < length; n += nsent) { if ((nsent = send(sock, buf+n, length-n, flag)) <= 0) { return nsent; } #ifdef DEBUG printf ("send raw, sent %d bytes\n",nsent); #endif } #ifdef DEBUG printf ("send raw end, sent %d bytes\n",n); #endif return n; } /*--------------------------------------------------------------------------*/ static int NET_RecvRaw(int sock, void *buffer, int length) { /* Receive exactly length bytes into buffer. Returns number of bytes */ /* received. Returns -1 in case of error. */ int nrecv, n; char *buf = (char *)buffer; if (sock < 0) return -1; for (n = 0; n < length; n += nrecv) { while ((nrecv = recv(sock, buf+n, length-n, 0)) == -1 && errno == EINTR) errno = 0; /* probably a SIGCLD that was caught */ if (nrecv < 0) return nrecv; else if (nrecv == 0) break; /*/ EOF */ } return n; } /*--------------------------------------------------------------------------*/ /* Yet Another URL Parser url - input url proto - input protocol host - output host port - output port fn - output filename */ static int NET_ParseUrl(const char *url, char *proto, char *host, int *port, char *fn) { /* parses urls into their bits */ /* returns 1 if error, else 0 */ char *urlcopy, *urlcopyorig; char *ptrstr; char *thost; int isftp = 0; /* figure out if there is a http: or ftp: */ urlcopyorig = urlcopy = (char *) malloc(strlen(url)+1); strcpy(urlcopy,url); /* set some defaults */ *port = 80; strcpy(proto,"http:"); strcpy(host,"localhost"); strcpy(fn,"/"); ptrstr = strstr(urlcopy,"http:"); if (ptrstr == NULL) { /* Nope, not http: */ ptrstr = strstr(urlcopy,"root:"); if (ptrstr == NULL) { /* Nope, not root either */ ptrstr = strstr(urlcopy,"ftp:"); if (ptrstr != NULL) { if (ptrstr == urlcopy) { strcpy(proto,"ftp:"); *port = 21; isftp++; urlcopy += 4; /* move past ftp: */ } else { /* not at the beginning, bad url */ free(urlcopyorig); return 1; } } } else { if (ptrstr == urlcopy) { urlcopy += 5; /* move past root: */ } else { /* not at the beginning, bad url */ free(urlcopyorig); return 1; } } } else { if (ptrstr == urlcopy) { urlcopy += 5; /* move past http: */ } else { free(urlcopyorig); return 1; } } /* got the protocol */ /* get the hostname */ if (urlcopy[0] == '/' && urlcopy[1] == '/') { /* we have a hostname */ urlcopy += 2; /* move past the // */ } /* do this only if http */ if (!strcmp(proto,"http:")) { /* Move past any user:password */ if ((thost = strchr(urlcopy, '@')) != NULL) urlcopy = thost+1; strcpy(host,urlcopy); thost = host; while (*urlcopy != '/' && *urlcopy != ':' && *urlcopy) { thost++; urlcopy++; } /* we should either be at the end of the string, have a /, or have a : */ *thost = '\0'; if (*urlcopy == ':') { /* follows a port number */ urlcopy++; sscanf(urlcopy,"%d",port); while (*urlcopy != '/' && *urlcopy) urlcopy++; /* step to the */ } } else { /* do this for ftp */ strcpy(host,urlcopy); thost = host; while (*urlcopy != '/' && *urlcopy) { thost++; urlcopy++; } *thost = '\0'; /* Now, we should either be at the end of the string, or have a / */ } /* Now the rest is a fn */ if (*urlcopy) { strcpy(fn,urlcopy); } free(urlcopyorig); return 0; } /*--------------------------------------------------------------------------*/ /* Small helper functions to set the netoutfile static string */ /* Called by cfileio after parsing the output file off of the input file url */ int http_checkfile (char *urltype, char *infile, char *outfile1) { char newinfile[MAXLEN]; FILE *httpfile; char contentencoding[MAXLEN]; int contentlength; /* default to http:// if there is no output file */ strcpy(urltype,"http://"); if (strlen(outfile1)) { /* there is an output file */ /* don't copy the "file://" prefix, if present. */ if (!strncmp(outfile1, "file://", 7) ) strcpy(netoutfile,outfile1+7); else strcpy(netoutfile,outfile1); if (!strncmp(outfile1, "mem:", 4) ) { /* copy the file to memory, with READ and WRITE access In this case, it makes no difference whether the http file and or the output file are compressed or not. */ strcpy(urltype, "httpmem://"); /* use special driver */ return 0; } if (strstr(infile, "?")) { /* file name contains a '?' so probably a cgi string; don't open it */ strcpy(urltype,"httpfile://"); return 0; } if (!http_open_network(infile,&httpfile,contentencoding,&contentlength)) { fclose(httpfile); /* It's there, we're happy */ if (strstr(infile,".gz") || (strstr(infile,".Z"))) { /* It's compressed */ if (strstr(outfile1,".gz") || (strstr(outfile1,".Z"))) { strcpy(urltype,"httpcompress://"); } else { strcpy(urltype,"httpfile://"); } } else { strcpy(urltype,"httpfile://"); } return 0; } /* Ok, let's try the .gz one */ strcpy(newinfile,infile); strcat(newinfile,".gz"); if (!http_open_network(newinfile,&httpfile,contentencoding, &contentlength)) { fclose(httpfile); strcpy(infile,newinfile); /* It's there, we're happy, and, it's compressed */ /* It's compressed */ if (strstr(outfile1,".gz") || (strstr(outfile1,".Z"))) { strcpy(urltype,"httpcompress://"); } else { strcpy(urltype,"httpfile://"); } return 0; } /* Ok, let's try the .Z one */ strcpy(newinfile,infile); strcat(newinfile,".Z"); if (!http_open_network(newinfile,&httpfile,contentencoding, &contentlength)) { fclose(httpfile); strcpy(infile,newinfile); /* It's there, we're happy, and, it's compressed */ if (strstr(outfile1,".gz") || (strstr(outfile1,".Z"))) { strcpy(urltype,"httpcompress://"); } else { strcpy(urltype,"httpfile://"); } return 0; } } return 0; } /*--------------------------------------------------------------------------*/ int ftp_checkfile (char *urltype, char *infile, char *outfile1) { char newinfile[MAXLEN]; FILE *ftpfile; FILE *command; int sock; /* default to ftp:// */ strcpy(urltype,"ftp://"); if (strlen(outfile1)) { /* there is an output file */ /* don't copy the "file://" prefix, if present. */ if (!strncmp(outfile1, "file://", 7) ) strcpy(netoutfile,outfile1+7); else strcpy(netoutfile,outfile1); if (!strncmp(outfile1, "mem:", 4) ) { /* copy the file to memory, with READ and WRITE access In this case, it makes no difference whether the ftp file and or the output file are compressed or not. */ strcpy(urltype, "ftpmem://"); /* use special driver */ return 0; } if (!ftp_open_network(infile,&ftpfile,&command,&sock)) { fclose(ftpfile); fclose(command); /* It's there, we're happy */ if (strstr(infile,".gz") || (strstr(infile,".Z"))) { /* It's compressed */ if (strstr(outfile1,".gz") || (strstr(outfile1,".Z"))) { strcpy(urltype,"ftpcompress://"); } else { strcpy(urltype,"ftpfile://"); } } else { strcpy(urltype,"ftpfile://"); } return 0; } /* Ok, let's try the .gz one */ strcpy(newinfile,infile); strcat(newinfile,".gz"); if (!ftp_open_network(newinfile,&ftpfile,&command,&sock)) { fclose(ftpfile); fclose(command); strcpy(infile,newinfile); /* It's there, we're happy, and, it's compressed */ if (strstr(outfile1,".gz") || (strstr(outfile1,".Z"))) { strcpy(urltype,"ftpcompress://"); } else { strcpy(urltype,"ftpfile://"); } return 0; } /* Ok, let's try the .Z one */ strcpy(newinfile,infile); strcat(newinfile,".Z"); if (!ftp_open_network(newinfile,&ftpfile,&command,&sock)) { fclose(ftpfile); fclose(command); strcpy(infile,newinfile); if (strstr(outfile1,".gz") || (strstr(outfile1,".Z"))) { strcpy(urltype,"ftpcompress://"); } else { strcpy(urltype,"ftpfile://"); } return 0; } } return 0; } /*--------------------------------------------------------------------------*/ /* A small helper function to wait for a particular status on the ftp connectino */ static int ftp_status(FILE *ftp, char *statusstr) { /* read through until we find a string beginning with statusstr */ /* This needs a timeout */ char recbuf[MAXLEN]; int len; len = strlen(statusstr); while (1) { if (!(fgets(recbuf,MAXLEN,ftp))) { #ifdef DEBUG puts("error reading response in ftp_status"); #endif return 1; /* error reading */ } #ifdef DEBUG printf("ftp_status, return string was %s\n",recbuf); #endif recbuf[len] = '\0'; /* make it short */ if (!strcmp(recbuf,statusstr)) { return 0; /* we're ok */ } if (recbuf[0] > '3') { /* oh well, some sort of error */ return 1; } } } /* *---------------------------------------------------------------------- * * CreateSocketAddress -- * * This function initializes a sockaddr structure for a host and port. * * Results: * 1 if the host was valid, 0 if the host could not be converted to * an IP address. * * Side effects: * Fills in the *sockaddrPtr structure. * *---------------------------------------------------------------------- */ static int CreateSocketAddress( struct sockaddr_in *sockaddrPtr, /* Socket address */ char *host, /* Host. NULL implies INADDR_ANY */ int port) /* Port number */ { struct hostent *hostent; /* Host database entry */ struct in_addr addr; /* For 64/32 bit madness */ char localhost[MAXLEN]; strcpy(localhost,host); memset((void *) sockaddrPtr, '\0', sizeof(struct sockaddr_in)); sockaddrPtr->sin_family = AF_INET; sockaddrPtr->sin_port = htons((unsigned short) (port & 0xFFFF)); if (host == NULL) { addr.s_addr = INADDR_ANY; } else { addr.s_addr = inet_addr(localhost); if (addr.s_addr == 0xFFFFFFFF) { hostent = gethostbyname(localhost); if (hostent != NULL) { memcpy((void *) &addr, (void *) hostent->h_addr_list[0], (size_t) hostent->h_length); } else { #ifdef EHOSTUNREACH errno = EHOSTUNREACH; #else #ifdef ENXIO errno = ENXIO; #endif #endif return 0; /* error */ } } } /* * NOTE: On 64 bit machines the assignment below is rumored to not * do the right thing. Please report errors related to this if you * observe incorrect behavior on 64 bit machines such as DEC Alphas. * Should we modify this code to do an explicit memcpy? */ sockaddrPtr->sin_addr.s_addr = addr.s_addr; return 1; /* Success. */ } /* Signal handler for timeouts */ static void signal_handler(int sig) { switch (sig) { case SIGALRM: /* process for alarm */ longjmp(env,sig); default: { /* Hmm, shouldn't have happend */ exit(sig); } } } /**************************************************************/ /* Root driver */ /*--------------------------------------------------------------------------*/ int root_init(void) { int ii; for (ii = 0; ii < NMAXFILES; ii++) /* initialize all empty slots in table */ { handleTable[ii].sock = 0; handleTable[ii].currentpos = 0; } return(0); } /*--------------------------------------------------------------------------*/ int root_setoptions(int options) { /* do something with the options argument, to stop compiler warning */ options = 0; return(options); } /*--------------------------------------------------------------------------*/ int root_getoptions(int *options) { *options = 0; return(0); } /*--------------------------------------------------------------------------*/ int root_getversion(int *version) { *version = 10; return(0); } /*--------------------------------------------------------------------------*/ int root_shutdown(void) { return(0); } /*--------------------------------------------------------------------------*/ int root_open(char *url, int rwmode, int *handle) { int ii, status; int sock; *handle = -1; for (ii = 0; ii < NMAXFILES; ii++) /* find empty slot in table */ { if (handleTable[ii].sock == 0) { *handle = ii; break; } } if (*handle == -1) return(TOO_MANY_FILES); /* too many files opened */ /*open the file */ if (rwmode) { status = root_openfile(url, "update", &sock); } else { status = root_openfile(url, "read", &sock); } if (status) return(status); handleTable[ii].sock = sock; handleTable[ii].currentpos = 0; return(0); } /*--------------------------------------------------------------------------*/ int root_create(char *filename, int *handle) { int ii, status; int sock; *handle = -1; for (ii = 0; ii < NMAXFILES; ii++) /* find empty slot in table */ { if (handleTable[ii].sock == 0) { *handle = ii; break; } } if (*handle == -1) return(TOO_MANY_FILES); /* too many files opened */ /*open the file */ status = root_openfile(filename, "create", &sock); if (status) { ffpmsg("Unable to create file"); return(status); } handleTable[ii].sock = sock; handleTable[ii].currentpos = 0; return(0); } /*--------------------------------------------------------------------------*/ int root_size(int handle, LONGLONG *filesize) /* return the size of the file in bytes */ { int sock; int offset; int status; int op; sock = handleTable[handle].sock; status = root_send_buffer(sock,ROOTD_STAT,NULL,0); status = root_recv_buffer(sock,&op,(char *)&offset, 4); *filesize = (LONGLONG) ntohl(offset); return(0); } /*--------------------------------------------------------------------------*/ int root_close(int handle) /* close the file */ { int status; int sock; sock = handleTable[handle].sock; status = root_send_buffer(sock,ROOTD_CLOSE,NULL,0); close(sock); handleTable[handle].sock = 0; return(0); } /*--------------------------------------------------------------------------*/ int root_flush(int handle) /* flush the file */ { int status; int sock; sock = handleTable[handle].sock; status = root_send_buffer(sock,ROOTD_FLUSH,NULL,0); return(0); } /*--------------------------------------------------------------------------*/ int root_seek(int handle, LONGLONG offset) /* seek to position relative to start of the file */ { handleTable[handle].currentpos = offset; return(0); } /*--------------------------------------------------------------------------*/ int root_read(int hdl, void *buffer, long nbytes) /* read bytes from the current position in the file */ { char msg[SHORTLEN]; int op; int status; int astat; /* we presume here that the file position will never be > 2**31 = 2.1GB */ sprintf(msg,"%ld %ld ",(long) handleTable[hdl].currentpos,nbytes); status = root_send_buffer(handleTable[hdl].sock,ROOTD_GET,msg,strlen(msg)); if ((unsigned) status != strlen(msg)) { return (READ_ERROR); } astat = 0; status = root_recv_buffer(handleTable[hdl].sock,&op,(char *) &astat,4); if (astat != 0) { return (READ_ERROR); } #ifdef DEBUG printf("root_read, op %d astat %d\n",op,astat); #endif status = NET_RecvRaw(handleTable[hdl].sock,buffer,nbytes); if (status != nbytes) { return (READ_ERROR); } handleTable[hdl].currentpos += nbytes; return(0); } /*--------------------------------------------------------------------------*/ int root_write(int hdl, void *buffer, long nbytes) /* write bytes at the current position in the file */ { char msg[SHORTLEN]; int len; int sock; int status; int astat; int op; sock = handleTable[hdl].sock; /* we presume here that the file position will never be > 2**31 = 2.1GB */ sprintf(msg,"%ld %ld ",(long) handleTable[hdl].currentpos,nbytes); len = strlen(msg); status = root_send_buffer(sock,ROOTD_PUT,msg,len+1); if (status != len+1) { return (WRITE_ERROR); } status = NET_SendRaw(sock,buffer,nbytes,NET_DEFAULT); if (status != nbytes) { return (WRITE_ERROR); } astat = 0; status = root_recv_buffer(handleTable[hdl].sock,&op,(char *) &astat,4); #ifdef DEBUG printf("root_read, op %d astat %d\n",op,astat); #endif if (astat != 0) { return (WRITE_ERROR); } handleTable[hdl].currentpos += nbytes; return(0); } /*--------------------------------------------------------------------------*/ int root_openfile(char *url, char *rwmode, int *sock) /* lowest level routine to physically open a root file */ { int status; char recbuf[MAXLEN]; char errorstr[MAXLEN]; char proto[SHORTLEN]; char host[SHORTLEN]; char fn[MAXLEN]; char turl[MAXLEN]; int port; int op; int ii; int authstat; /* Parse the URL apart again */ strcpy(turl,"root://"); strcat(turl,url); if (NET_ParseUrl(turl,proto,host,&port,fn)) { sprintf(errorstr,"URL Parse Error (root_open) %s",url); ffpmsg(errorstr); return (FILE_NOT_OPENED); } #ifdef DEBUG printf("Connecting to %s on port %d\n",host,port); #endif /* Connect to the remote host */ *sock = NET_TcpConnect(host,port); if (*sock < 0) { ffpmsg("Couldn't connect to host (http_open_network)"); return (FILE_NOT_OPENED); } /* get the username */ if (NULL != getenv("ROOTUSERNAME")) { strcpy(recbuf,getenv("ROOTUSERNAME")); } else { printf("Username: "); fgets(recbuf,MAXLEN,stdin); recbuf[strlen(recbuf)-1] = '\0'; } status = root_send_buffer(*sock, ROOTD_USER, recbuf,strlen(recbuf)); if (status < 0) { ffpmsg("error talking to remote system on username "); return (FILE_NOT_OPENED); } status = root_recv_buffer(*sock,&op,(char *)&authstat,4); if (!status) { ffpmsg("error talking to remote system on username"); return (FILE_NOT_OPENED); } #ifdef DEBUG printf("op is %d and authstat is %d\n",op,authstat); #endif if (op != ROOTD_AUTH) { ffpmsg("ERROR on ROOTD_USER"); ffpmsg(recbuf); return (FILE_NOT_OPENED); } /* now the password */ if (NULL != getenv("ROOTPASSWORD")) { strcpy(recbuf,getenv("ROOTPASSWORD")); } else { printf("Password: "); fgets(recbuf,MAXLEN,stdin); recbuf[strlen(recbuf)-1] = '\0'; } /* ones complement the password */ for (ii=0;(unsigned) ii includes the 4 bytes for the op, the length bytes (4) are implicit if buffer is null don't send it, not everything needs something sent */ int len; int status; int hdr[2]; len = 4; if (buffer != NULL) { len += buflen; } hdr[0] = htonl(len); #ifdef DEBUG printf("len sent is %x\n",hdr[0]); #endif hdr[1] = htonl(op); #ifdef DEBUG printf("op sent is %x\n",hdr[1]); #endif #ifdef DEBUG printf("Sending op %d and length of %d\n",op,len); #endif status = NET_SendRaw(sock,hdr,sizeof(hdr),NET_DEFAULT); if (status < 0) { return status; } if (buffer != NULL) { status = NET_SendRaw(sock,buffer,buflen,NET_DEFAULT); } return status; } static int root_recv_buffer(int sock, int *op, char *buffer, int buflen) { /* recv a buffer, the form is */ int recv1 = 0; int len; int status; char recbuf[MAXLEN]; status = NET_RecvRaw(sock,&len,4); #ifdef DEBUG printf("Recv: status from rec is %d\n",status); #endif if (status < 0) { return status; } recv1 += status; len = ntohl(len); #ifdef DEBUG printf ("Recv: length is %d\n",len); #endif /* ok, have the length, recive the operation */ len -= 4; status = NET_RecvRaw(sock,op,4); if (status < 0) { return status; } recv1 += status; *op = ntohl(*op); #ifdef DEBUG printf ("Recv: Operation is %d\n",*op); #endif if (len > MAXLEN) { len = MAXLEN; } if (len > 0) { /* Get the rest of the message */ status = NET_RecvRaw(sock,recbuf,len); if (len > buflen) { len = buflen; } memcpy(buffer,recbuf,len); if (status < 0) { return status; } } recv1 += status; return recv1; } /*****************************************************************************/ /* Encode a string into MIME Base64 format string */ static int encode64(unsigned s_len, char *src, unsigned d_len, char *dst) { static char base64[] = "ABCDEFGHIJKLMNOPQRSTUVWXYZ" "abcdefghijklmnopqrstuvwxyz" "0123456789" "+/"; unsigned triad; for (triad = 0; triad < s_len; triad += 3) { unsigned long int sr; unsigned byte; for (byte = 0; (byte<3) && (triad+byte #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffppri( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write (1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ short *array, /* I - array of values that are written */ int *status) /* IO - error status */ /* Write an array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long row; short nullvalue; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_write_compressed_pixels(fptr, TSHORT, firstelem, nelem, 0, array, &nullvalue, status); return(*status); } row=maxvalue(1,group); ffpcli(fptr, 2, row, firstelem, nelem, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffppni( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to write(1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ short *array, /* I - array of values that are written */ short nulval, /* I - undefined pixel value */ int *status) /* IO - error status */ /* Write an array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). Any array values that are equal to the value of nulval will be replaced with the null pixel value that is appropriate for this column. */ { long row; short nullvalue; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ nullvalue = nulval; /* set local variable */ fits_write_compressed_pixels(fptr, TSHORT, firstelem, nelem, 1, array, &nullvalue, status); return(*status); } row=maxvalue(1,group); ffpcni(fptr, 2, row, firstelem, nelem, array, nulval, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffp2di(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ short *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write an entire 2-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { /* call the 3D writing routine, with the 3rd dimension = 1 */ ffp3di(fptr, group, ncols, naxis2, naxis1, naxis2, 1, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffp3di(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG nrows, /* I - number of rows in each plane of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ LONGLONG naxis3, /* I - FITS image NAXIS3 value */ short *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write an entire 3-D cube of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long tablerow, ii, jj; long fpixel[3]= {1,1,1}, lpixel[3]; LONGLONG nfits, narray; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ lpixel[0] = (long) ncols; lpixel[1] = (long) nrows; lpixel[2] = (long) naxis3; fits_write_compressed_img(fptr, TSHORT, fpixel, lpixel, 0, array, NULL, status); return(*status); } tablerow=maxvalue(1,group); if (ncols == naxis1 && nrows == naxis2) /* arrays have same size? */ { /* all the image pixels are contiguous, so write all at once */ ffpcli(fptr, 2, tablerow, 1L, naxis1 * naxis2 * naxis3, array, status); return(*status); } if (ncols < naxis1 || nrows < naxis2) return(*status = BAD_DIMEN); nfits = 1; /* next pixel in FITS image to write to */ narray = 0; /* next pixel in input array to be written */ /* loop over naxis3 planes in the data cube */ for (jj = 0; jj < naxis3; jj++) { /* loop over the naxis2 rows in the FITS image, */ /* writing naxis1 pixels to each row */ for (ii = 0; ii < naxis2; ii++) { if (ffpcli(fptr, 2, tablerow, nfits, naxis1,&array[narray],status) > 0) return(*status); nfits += naxis1; narray += ncols; } narray += (nrows - naxis2) * ncols; } return(*status); } /*--------------------------------------------------------------------------*/ int ffpssi(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ long naxis, /* I - number of data axes in array */ long *naxes, /* I - size of each FITS axis */ long *fpixel, /* I - 1st pixel in each axis to write (1=1st) */ long *lpixel, /* I - last pixel in each axis to write */ short *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write a subsection of pixels to the primary array or image. A subsection is defined to be any contiguous rectangular array of pixels within the n-dimensional FITS data file. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long tablerow; LONGLONG fpix[7], dimen[7], astart, pstart; LONGLONG off2, off3, off4, off5, off6, off7; LONGLONG st10, st20, st30, st40, st50, st60, st70; LONGLONG st1, st2, st3, st4, st5, st6, st7; long ii, i1, i2, i3, i4, i5, i6, i7, irange[7]; if (*status > 0) return(*status); if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_write_compressed_img(fptr, TSHORT, fpixel, lpixel, 0, array, NULL, status); return(*status); } if (naxis < 1 || naxis > 7) return(*status = BAD_DIMEN); tablerow=maxvalue(1,group); /* calculate the size and number of loops to perform in each dimension */ for (ii = 0; ii < 7; ii++) { fpix[ii]=1; irange[ii]=1; dimen[ii]=1; } for (ii = 0; ii < naxis; ii++) { fpix[ii]=fpixel[ii]; irange[ii]=lpixel[ii]-fpixel[ii]+1; dimen[ii]=naxes[ii]; } i1=irange[0]; /* compute the pixel offset between each dimension */ off2 = dimen[0]; off3 = off2 * dimen[1]; off4 = off3 * dimen[2]; off5 = off4 * dimen[3]; off6 = off5 * dimen[4]; off7 = off6 * dimen[5]; st10 = fpix[0]; st20 = (fpix[1] - 1) * off2; st30 = (fpix[2] - 1) * off3; st40 = (fpix[3] - 1) * off4; st50 = (fpix[4] - 1) * off5; st60 = (fpix[5] - 1) * off6; st70 = (fpix[6] - 1) * off7; /* store the initial offset in each dimension */ st1 = st10; st2 = st20; st3 = st30; st4 = st40; st5 = st50; st6 = st60; st7 = st70; astart = 0; for (i7 = 0; i7 < irange[6]; i7++) { for (i6 = 0; i6 < irange[5]; i6++) { for (i5 = 0; i5 < irange[4]; i5++) { for (i4 = 0; i4 < irange[3]; i4++) { for (i3 = 0; i3 < irange[2]; i3++) { pstart = st1 + st2 + st3 + st4 + st5 + st6 + st7; for (i2 = 0; i2 < irange[1]; i2++) { if (ffpcli(fptr, 2, tablerow, pstart, i1, &array[astart], status) > 0) return(*status); astart += i1; pstart += off2; } st2 = st20; st3 = st3+off3; } st3 = st30; st4 = st4+off4; } st4 = st40; st5 = st5+off5; } st5 = st50; st6 = st6+off6; } st6 = st60; st7 = st7+off7; } return(*status); } /*--------------------------------------------------------------------------*/ int ffpgpi( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ long firstelem, /* I - first vector element to write(1 = 1st) */ long nelem, /* I - number of values to write */ short *array, /* I - array of values that are written */ int *status) /* IO - error status */ /* Write an array of group parameters to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long row; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffpcli(fptr, 1L, row, firstelem, nelem, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffpcli( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ short *array, /* I - array of values to write */ int *status) /* IO - error status */ /* Write an array of values to a column in the current FITS HDU. The column number may refer to a real column in an ASCII or binary table, or it may refer to a virtual column in a 1 or more grouped FITS primary array. FITSIO treats a primary array as a binary table with 2 vector columns: the first column contains the group parameters (often with length = 0) and the second column contains the array of image pixels. Each row of the table represents a group in the case of multigroup FITS images. The input array of values will be converted to the datatype of the column and will be inverse-scaled by the FITS TSCALn and TZEROn values if necessary. */ { int tcode, maxelem2, hdutype, writeraw; long twidth, incre; long ntodo; LONGLONG repeat, startpos, elemnum, wrtptr, rowlen, rownum, remain, next, tnull, maxelem; double scale, zero; char tform[20], cform[20]; char message[FLEN_ERRMSG]; char snull[20]; /* the FITS null value */ double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */ void *buffer; if (*status > 0) /* inherit input status value if > 0 */ return(*status); buffer = cbuff; /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if (ffgcprll( fptr, colnum, firstrow, firstelem, nelem, 1, &scale, &zero, tform, &twidth, &tcode, &maxelem2, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0) return(*status); maxelem = maxelem2; if (tcode == TSTRING) ffcfmt(tform, cform); /* derive C format for writing strings */ /* if there is no scaling and the native machine format is not byteswapped, then we can simply write the raw data bytes into the FITS file if the datatype of the FITS column is the same as the input values. Otherwise, we must convert the raw values into the scaled and/or machine dependent format in a temporary buffer that has been allocated for this purpose. */ if (scale == 1. && zero == 0. && MACHINE == NATIVE && tcode == TSHORT) { writeraw = 1; if (nelem < (LONGLONG)INT32_MAX) { maxelem = nelem; } else { maxelem = INT32_MAX/2; } } else writeraw = 0; /*---------------------------------------------------------------------*/ /* Now write the pixels to the FITS column. */ /* First call the ffXXfYY routine to (1) convert the datatype */ /* if necessary, and (2) scale the values by the FITS TSCALn and */ /* TZEROn linear scaling parameters into a temporary buffer. */ /*---------------------------------------------------------------------*/ remain = nelem; /* remaining number of values to write */ next = 0; /* next element in array to be written */ rownum = 0; /* row number, relative to firstrow */ while (remain) { /* limit the number of pixels to process a one time to the number that will fit in the buffer space or to the number of pixels that remain in the current vector, which ever is smaller. */ ntodo = (long) minvalue(remain, maxelem); ntodo = (long) minvalue(ntodo, (repeat - elemnum)); wrtptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * incre); ffmbyt(fptr, wrtptr, IGNORE_EOF, status); /* move to write position */ switch (tcode) { case (TSHORT): if (writeraw) { /* write raw input bytes without conversion */ ffpi2b(fptr, ntodo, incre, &array[next], status); } else { /* convert the raw data before writing to FITS file */ ffi2fi2(&array[next], ntodo, scale, zero, (short *) buffer, status); ffpi2b(fptr, ntodo, incre, (short *) buffer, status); } break; case (TLONGLONG): ffi2fi8(&array[next], ntodo, scale, zero, (LONGLONG *) buffer, status); ffpi8b(fptr, ntodo, incre, (long *) buffer, status); break; case (TBYTE): ffi2fi1(&array[next], ntodo, scale, zero, (unsigned char *) buffer, status); ffpi1b(fptr, ntodo, incre, (unsigned char *) buffer, status); break; case (TLONG): ffi2fi4(&array[next], ntodo, scale, zero, (INT32BIT *) buffer, status); ffpi4b(fptr, ntodo, incre, (INT32BIT *) buffer, status); break; case (TFLOAT): ffi2fr4(&array[next], ntodo, scale, zero, (float *) buffer, status); ffpr4b(fptr, ntodo, incre, (float *) buffer, status); break; case (TDOUBLE): ffi2fr8(&array[next], ntodo, scale, zero, (double *) buffer, status); ffpr8b(fptr, ntodo, incre, (double *) buffer, status); break; case (TSTRING): /* numerical column in an ASCII table */ if (cform[1] != 's') /* "%s" format is a string */ { ffi2fstr(&array[next], ntodo, scale, zero, cform, twidth, (char *) buffer, status); if (incre == twidth) /* contiguous bytes */ ffpbyt(fptr, ntodo * twidth, buffer, status); else ffpbytoff(fptr, twidth, ntodo, incre - twidth, buffer, status); break; } /* can't write to string column, so fall thru to default: */ default: /* error trap */ sprintf(message, "Cannot write numbers to column %d which has format %s", colnum,tform); ffpmsg(message); if (hdutype == ASCII_TBL) return(*status = BAD_ATABLE_FORMAT); else return(*status = BAD_BTABLE_FORMAT); } /* End of switch block */ /*-------------------------*/ /* Check for fatal error */ /*-------------------------*/ if (*status > 0) /* test for error during previous write operation */ { sprintf(message, "Error writing elements %.0f thru %.0f of input data array (ffpcli).", (double) (next+1), (double) (next+ntodo)); ffpmsg(message); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain -= ntodo; if (remain) { next += ntodo; elemnum += ntodo; if (elemnum == repeat) /* completed a row; start on next row */ { elemnum = 0; rownum++; } } } /* End of main while Loop */ /*--------------------------------*/ /* check for numerical overflow */ /*--------------------------------*/ if (*status == OVERFLOW_ERR) { ffpmsg( "Numerical overflow during type conversion while writing FITS data."); *status = NUM_OVERFLOW; } return(*status); } /*--------------------------------------------------------------------------*/ int ffpcni( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ short *array, /* I - array of values to write */ short nulvalue, /* I - value used to flag undefined pixels */ int *status) /* IO - error status */ /* Write an array of elements to the specified column of a table. Any input pixels equal to the value of nulvalue will be replaced by the appropriate null value in the output FITS file. The input array of values will be converted to the datatype of the column and will be inverse-scaled by the FITS TSCALn and TZEROn values if necessary */ { tcolumn *colptr; LONGLONG ngood = 0, nbad = 0, ii; LONGLONG repeat, first, fstelm, fstrow; int tcode, overflow = 0; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) { if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); } colptr = (fptr->Fptr)->tableptr; /* point to first column */ colptr += (colnum - 1); /* offset to correct column structure */ tcode = colptr->tdatatype; if (tcode > 0) repeat = colptr->trepeat; /* repeat count for this column */ else repeat = firstelem -1 + nelem; /* variable length arrays */ /* if variable length array, first write the whole input vector, then go back and fill in the nulls */ if (tcode < 0) { if (ffpcli(fptr, colnum, firstrow, firstelem, nelem, array, status) > 0) { if (*status == NUM_OVERFLOW) { /* ignore overflows, which are possibly the null pixel values */ /* overflow = 1; */ *status = 0; } else { return(*status); } } } /* absolute element number in the column */ first = (firstrow - 1) * repeat + firstelem; for (ii = 0; ii < nelem; ii++) { if (array[ii] != nulvalue) /* is this a good pixel? */ { if (nbad) /* write previous string of bad pixels */ { fstelm = ii - nbad + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (ffpclu(fptr, colnum, fstrow, fstelm, nbad, status) > 0) return(*status); nbad=0; } ngood = ngood +1; /* the consecutive number of good pixels */ } else { if (ngood) /* write previous string of good pixels */ { fstelm = ii - ngood + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (tcode > 0) { /* variable length arrays have already been written */ if (ffpcli(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status) > 0) { if (*status == NUM_OVERFLOW) { overflow = 1; *status = 0; } else { return(*status); } } } ngood=0; } nbad = nbad +1; /* the consecutive number of bad pixels */ } } /* finished loop; now just write the last set of pixels */ if (ngood) /* write last string of good pixels */ { fstelm = ii - ngood + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (tcode > 0) { /* variable length arrays have already been written */ ffpcli(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status); } } else if (nbad) /* write last string of bad pixels */ { fstelm = ii - nbad + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ ffpclu(fptr, colnum, fstrow, fstelm, nbad, status); } if (*status <= 0) { if (overflow) { *status = NUM_OVERFLOW; } } return(*status); } /*--------------------------------------------------------------------------*/ int ffi2fi1(short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ unsigned char *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < 0) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > UCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) input[ii]; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) (dvalue + .5); } } return(*status); } /*--------------------------------------------------------------------------*/ int ffi2fi2(short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ short *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { memcpy(output, input, ntodo * sizeof(short) ); } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else { if (dvalue >= 0) output[ii] = (short) (dvalue + .5); else output[ii] = (short) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffi2fi4(short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ INT32BIT *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = (INT32BIT) input[ii]; /* just copy input to output */ } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT32_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT32_MAX; } else { if (dvalue >= 0) output[ii] = (INT32BIT) (dvalue + .5); else output[ii] = (INT32BIT) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffi2fi8(short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ LONGLONG *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = input[ii]; } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (dvalue > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else { if (dvalue >= 0) output[ii] = (LONGLONG) (dvalue + .5); else output[ii] = (LONGLONG) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffi2fr4(short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ float *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = (float) input[ii]; } else { for (ii = 0; ii < ntodo; ii++) output[ii] = (float) ((input[ii] - zero) / scale); } return(*status); } /*--------------------------------------------------------------------------*/ int ffi2fr8(short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ double *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = (double) input[ii]; } else { for (ii = 0; ii < ntodo; ii++) output[ii] = (input[ii] - zero) / scale; } return(*status); } /*--------------------------------------------------------------------------*/ int ffi2fstr(short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ char *cform, /* I - format for output string values */ long twidth, /* I - width of each field, in chars */ char *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do scaling if required. */ { long ii; double dvalue; char *cptr, *tptr; cptr = output; tptr = output; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { sprintf(output, cform, (double) input[ii]); output += twidth; if (*output) /* if this char != \0, then overflow occurred */ *status = OVERFLOW_ERR; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; sprintf(output, cform, dvalue); output += twidth; if (*output) /* if this char != \0, then overflow occurred */ *status = OVERFLOW_ERR; } } /* replace any commas with periods (e.g., in French locale) */ while ((cptr = strchr(cptr, ','))) *cptr = '.'; return(*status); } healpy-1.8.1/cfitsio/makefile.bc0000654000175000017530000003072212272000775017144 0ustar zoncaplanck00000000000000# # Borland C++ IDE generated makefile # Generated 10/12/99 at 1:24:11 PM # .AUTODEPEND # # Borland C++ tools # IMPLIB = Implib BCC32 = Bcc32 +BccW32.cfg BCC32I = Bcc32i +BccW32.cfg TLINK32 = TLink32 ILINK32 = Ilink32 TLIB = TLib BRC32 = Brc32 TASM32 = Tasm32 # # IDE macros # # # Options # IDE_LinkFLAGS32 = -LD:\BC5\LIB LinkerLocalOptsAtC32_cfitsiodlib = -Tpd -ap -c ResLocalOptsAtC32_cfitsiodlib = BLocalOptsAtC32_cfitsiodlib = CompInheritOptsAt_cfitsiodlib = -ID:\BC5\INCLUDE -D_RTLDLL -DWIN32; LinkerInheritOptsAt_cfitsiodlib = -x LinkerOptsAt_cfitsiodlib = $(LinkerLocalOptsAtC32_cfitsiodlib) ResOptsAt_cfitsiodlib = $(ResLocalOptsAtC32_cfitsiodlib) BOptsAt_cfitsiodlib = $(BLocalOptsAtC32_cfitsiodlib) # # Dependency List # Dep_cfitsio = \ cfitsio.lib cfitsio : BccW32.cfg $(Dep_cfitsio) echo MakeNode cfitsio.lib : cfitsio.dll $(IMPLIB) $@ cfitsio.dll Dep_cfitsioddll = \ listhead.obj\ imcompress.obj\ quantize.obj\ ricecomp.obj\ pliocomp.obj\ iraffits.obj\ wcsutil.obj\ histo.obj\ scalnull.obj\ region.obj\ putkey.obj\ putcoluk.obj\ putcoluj.obj\ putcolui.obj\ putcolu.obj\ putcols.obj\ putcoll.obj\ putcolk.obj\ putcolj.obj\ putcoli.obj\ putcole.obj\ putcold.obj\ putcolb.obj\ putcolsb.obj\ putcol.obj\ modkey.obj\ swapproc.obj\ getcol.obj\ group.obj\ getkey.obj\ getcoluk.obj\ getcoluj.obj\ getcolui.obj\ getcols.obj\ getcoll.obj\ getcolk.obj\ getcolj.obj\ getcoli.obj\ getcole.obj\ getcold.obj\ getcolb.obj\ getcolsb.obj\ grparser.obj\ fitscore.obj\ f77_wrap1.obj\ f77_wrap2.obj\ f77_wrap3.obj\ f77_wrap4.obj\ eval_y.obj\ eval_l.obj\ eval_f.obj\ edithdu.obj\ editcol.obj\ drvrmem.obj\ drvrfile.obj\ checksum.obj\ cfileio.obj\ buffers.obj\ fits_hcompress.obj\ fits_hdecompress.obj\ zuncompress.obj\ zcompress.obj\ adler32.obj\ crc32.obj\ inffast.obj\ inftrees.obj\ trees.obj\ zutil.obj\ deflate.obj\ infback.obj\ inflate.obj\ uncompr.obj cfitsio.dll : $(Dep_cfitsioddll) cfitsio.def $(ILINK32) @&&| /v $(IDE_LinkFLAGS32) $(LinkerOptsAt_cfitsiodlib) $(LinkerInheritOptsAt_cfitsiodlib) + D:\BC5\LIB\c0d32.obj+ listhead.obj+ imcompress.obj+ quantize.obj+ ricecomp.obj+ pliocomp.obj+ iraffits.obj+ wcsutil.obj+ histo.obj+ iraffits.obj+ scalnull.obj+ region.obj+ putkey.obj+ putcoluk.obj+ putcoluj.obj+ putcolui.obj+ putcolu.obj+ putcols.obj+ putcoll.obj+ putcolk.obj+ putcolj.obj+ putcoli.obj+ putcole.obj+ putcold.obj+ putcolb.obj+ putcolsb.obj+ putcol.obj+ modkey.obj+ swapproc.obj+ getcol.obj+ group.obj+ getkey.obj+ getcoluk.obj+ getcoluj.obj+ getcolui.obj+ getcols.obj+ getcoll.obj+ getcolk.obj+ getcolj.obj+ getcoli.obj+ getcole.obj+ getcold.obj+ getcolb.obj+ getcolsb.obj+ grparser.obj+ fitscore.obj+ f77_wrap1.obj+ f77_wrap2.obj+ f77_wrap3.obj+ f77_wrap4.obj+ eval_y.obj+ eval_l.obj+ eval_f.obj+ edithdu.obj+ editcol.obj+ drvrmem.obj+ drvrfile.obj+ checksum.obj+ cfileio.obj+ buffers.obj+ fits_hcompress.obj+ fits_hdecompress.obj+ zuncompress.obj+ zcompress.obj+ adler32.obj+ crc32.obj+ inffast.obj+ inftrees.obj+ trees.obj+ zutil.obj+ deflate.obj+ infback.obj+ inflate.obj+ uncompr.obj $<,$* D:\BC5\LIB\import32.lib+ D:\BC5\LIB\cw32i.lib cfitsio.def | wcsutil.obj : wcsutil.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ wcsutil.c | iraffits.obj : iraffits.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ iraffits.c | histo.obj : histo.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ histo.c | scalnull.obj : scalnull.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ scalnull.c | region.obj : region.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ region.c | putkey.obj : putkey.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ putkey.c | putcoluk.obj : putcoluk.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ putcoluk.c | putcoluj.obj : putcoluj.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ putcoluj.c | putcolui.obj : putcolui.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ putcolui.c | putcolu.obj : putcolu.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ putcolu.c | putcols.obj : putcols.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ putcols.c | putcoll.obj : putcoll.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ putcoll.c | putcolk.obj : putcolk.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ putcolk.c | putcolj.obj : putcolj.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ putcolj.c | putcoli.obj : putcoli.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ putcoli.c | putcole.obj : putcole.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ putcole.c | putcold.obj : putcold.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ putcold.c | putcolb.obj : putcolb.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ putcolb.c | putcolsb.obj : putcolsb.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ putcolsb.c | putcol.obj : putcol.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ putcol.c | modkey.obj : modkey.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ modkey.c | swapproc.obj : swapproc.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ swapproc.c | getcol.obj : getcol.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ getcol.c | group.obj : group.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ group.c | getkey.obj : getkey.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ getkey.c | getcoluk.obj : getcoluk.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ getcoluk.c | getcoluj.obj : getcoluj.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ getcoluj.c | getcolui.obj : getcolui.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ getcolui.c | getcols.obj : getcols.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ getcols.c | getcoll.obj : getcoll.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ getcoll.c | getcolk.obj : getcolk.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ getcolk.c | getcolj.obj : getcolj.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ getcolj.c | getcoli.obj : getcoli.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ getcoli.c | getcole.obj : getcole.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ getcole.c | getcold.obj : getcold.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ getcold.c | getcolb.obj : getcolb.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ getcolb.c | getcolsb.obj : getcolsb.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ getcolsb.c | grparser.obj : grparser.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ grparser.c | fitscore.obj : fitscore.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ fitscore.c | f77_wrap1.obj : f77_wrap1.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ f77_wrap1.c | f77_wrap2.obj : f77_wrap2.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ f77_wrap2.c | f77_wrap3.obj : f77_wrap3.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ f77_wrap3.c | f77_wrap4.obj : f77_wrap4.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ f77_wrap4.c | eval_y.obj : eval_y.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ eval_y.c | eval_l.obj : eval_l.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ eval_l.c | eval_f.obj : eval_f.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ eval_f.c | edithdu.obj : edithdu.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ edithdu.c | editcol.obj : editcol.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ editcol.c | drvrmem.obj : drvrmem.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ drvrmem.c | drvrfile.obj : drvrfile.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ drvrfile.c | checksum.obj : checksum.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ checksum.c | cfileio.obj : cfileio.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ cfileio.c | listhead.obj : listhead.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ listhead.c | imcompress.obj : imcompress.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ imcompress.c | quantize.obj : quantize.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ quantize.c | ricecomp.obj : ricecomp.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ ricecomp.c | pliocomp.obj : pliocomp.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ pliocomp.c | buffers.obj : buffers.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ buffers.c | fits_hcompress.obj : fits_hcompress.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ fits_hcompress.c | fits_hdecompress.obj : fits_hdecompress.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ fits_hdecompress.c | zuncompress.obj : zuncompress.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ zuncompress.c | zcompress.obj : zcompress.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ zcompress.c | adler32.obj : adler32.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ adler32.c | crc32.obj : crc32.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ crc32.c | inffast.obj : inffast.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ inffast.c | inftrees.obj : inftrees.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ inftrees.c | trees.obj : trees.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ trees.c | zutil.obj : zutil.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ zutil.c | deflate.obj : deflate.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ deflate.c | infback.obj : infback.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ infback.c | inflate.obj : inflate.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ inflate.c | uncompr.obj : uncompr.c $(BCC32) -P- -c @&&| $(CompOptsAt_cfitsiodlib) $(CompInheritOptsAt_cfitsiodlib) -o$@ uncompr.c | windumpexts.exe : windumpexts.c bcc32 windumpexts.c cfitsio.def: windumpexts.exe windumpexts -o cfitsio.def cfitsio.dll @&&| $(Dep_cfitsioddll) | # Compiler configuration file BccW32.cfg : Copy &&| -w -R -v -WM- -vi -H -H=cfitsio.csm -WCD | $@ healpy-1.8.1/cfitsio/putcol.c0000654000175000017530000017765012272000775016547 0ustar zoncaplanck00000000000000/* This file, putcol.c, contains routines that write data elements to */ /* a FITS image or table. These are the generic routines. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffppx( fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the value */ long *firstpix, /* I - coord of first pixel to write(1 based) */ LONGLONG nelem, /* I - number of values to write */ void *array, /* I - array of values that are written */ int *status) /* IO - error status */ /* Write an array of pixels to the primary array. The datatype of the input array is defined by the 2nd argument. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). This routine is simillar to ffppr, except it supports writing to large images with more than 2**31 pixels. */ { int naxis, ii; long group = 1; LONGLONG firstelem, dimsize = 1, naxes[9]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* get the size of the image */ ffgidm(fptr, &naxis, status); ffgiszll(fptr, 9, naxes, status); firstelem = 0; for (ii=0; ii < naxis; ii++) { firstelem += ((firstpix[ii] - 1) * dimsize); dimsize *= naxes[ii]; } firstelem++; if (datatype == TBYTE) { ffpprb(fptr, group, firstelem, nelem, (unsigned char *) array, status); } else if (datatype == TSBYTE) { ffpprsb(fptr, group, firstelem, nelem, (signed char *) array, status); } else if (datatype == TUSHORT) { ffpprui(fptr, group, firstelem, nelem, (unsigned short *) array, status); } else if (datatype == TSHORT) { ffppri(fptr, group, firstelem, nelem, (short *) array, status); } else if (datatype == TUINT) { ffppruk(fptr, group, firstelem, nelem, (unsigned int *) array, status); } else if (datatype == TINT) { ffpprk(fptr, group, firstelem, nelem, (int *) array, status); } else if (datatype == TULONG) { ffppruj(fptr, group, firstelem, nelem, (unsigned long *) array, status); } else if (datatype == TLONG) { ffpprj(fptr, group, firstelem, nelem, (long *) array, status); } else if (datatype == TLONGLONG) { ffpprjj(fptr, group, firstelem, nelem, (LONGLONG *) array, status); } else if (datatype == TFLOAT) { ffppre(fptr, group, firstelem, nelem, (float *) array, status); } else if (datatype == TDOUBLE) { ffpprd(fptr, group, firstelem, nelem, (double *) array, status); } else *status = BAD_DATATYPE; return(*status); } /*--------------------------------------------------------------------------*/ int ffppxll( fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the value */ LONGLONG *firstpix, /* I - coord of first pixel to write(1 based) */ LONGLONG nelem, /* I - number of values to write */ void *array, /* I - array of values that are written */ int *status) /* IO - error status */ /* Write an array of pixels to the primary array. The datatype of the input array is defined by the 2nd argument. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). This routine is simillar to ffppr, except it supports writing to large images with more than 2**31 pixels. */ { int naxis, ii; long group = 1; LONGLONG firstelem, dimsize = 1, naxes[9]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* get the size of the image */ ffgidm(fptr, &naxis, status); ffgiszll(fptr, 9, naxes, status); firstelem = 0; for (ii=0; ii < naxis; ii++) { firstelem += ((firstpix[ii] - 1) * dimsize); dimsize *= naxes[ii]; } firstelem++; if (datatype == TBYTE) { ffpprb(fptr, group, firstelem, nelem, (unsigned char *) array, status); } else if (datatype == TSBYTE) { ffpprsb(fptr, group, firstelem, nelem, (signed char *) array, status); } else if (datatype == TUSHORT) { ffpprui(fptr, group, firstelem, nelem, (unsigned short *) array, status); } else if (datatype == TSHORT) { ffppri(fptr, group, firstelem, nelem, (short *) array, status); } else if (datatype == TUINT) { ffppruk(fptr, group, firstelem, nelem, (unsigned int *) array, status); } else if (datatype == TINT) { ffpprk(fptr, group, firstelem, nelem, (int *) array, status); } else if (datatype == TULONG) { ffppruj(fptr, group, firstelem, nelem, (unsigned long *) array, status); } else if (datatype == TLONG) { ffpprj(fptr, group, firstelem, nelem, (long *) array, status); } else if (datatype == TLONGLONG) { ffpprjj(fptr, group, firstelem, nelem, (LONGLONG *) array, status); } else if (datatype == TFLOAT) { ffppre(fptr, group, firstelem, nelem, (float *) array, status); } else if (datatype == TDOUBLE) { ffpprd(fptr, group, firstelem, nelem, (double *) array, status); } else *status = BAD_DATATYPE; return(*status); } /*--------------------------------------------------------------------------*/ int ffppxn( fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the value */ long *firstpix, /* I - first vector element to write(1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ void *array, /* I - array of values that are written */ void *nulval, /* I - pointer to the null value */ int *status) /* IO - error status */ /* Write an array of values to the primary array. The datatype of the input array is defined by the 2nd argument. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). This routine supports writing to large images with more than 2**31 pixels. */ { int naxis, ii; long group = 1; LONGLONG firstelem, dimsize = 1, naxes[9]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (nulval == NULL) /* null value not defined? */ { ffppx(fptr, datatype, firstpix, nelem, array, status); return(*status); } /* get the size of the image */ ffgidm(fptr, &naxis, status); ffgiszll(fptr, 9, naxes, status); firstelem = 0; for (ii=0; ii < naxis; ii++) { firstelem += ((firstpix[ii] - 1) * dimsize); dimsize *= naxes[ii]; } firstelem++; if (datatype == TBYTE) { ffppnb(fptr, group, firstelem, nelem, (unsigned char *) array, *(unsigned char *) nulval, status); } else if (datatype == TSBYTE) { ffppnsb(fptr, group, firstelem, nelem, (signed char *) array, *(signed char *) nulval, status); } else if (datatype == TUSHORT) { ffppnui(fptr, group, firstelem, nelem, (unsigned short *) array, *(unsigned short *) nulval,status); } else if (datatype == TSHORT) { ffppni(fptr, group, firstelem, nelem, (short *) array, *(short *) nulval, status); } else if (datatype == TUINT) { ffppnuk(fptr, group, firstelem, nelem, (unsigned int *) array, *(unsigned int *) nulval, status); } else if (datatype == TINT) { ffppnk(fptr, group, firstelem, nelem, (int *) array, *(int *) nulval, status); } else if (datatype == TULONG) { ffppnuj(fptr, group, firstelem, nelem, (unsigned long *) array, *(unsigned long *) nulval,status); } else if (datatype == TLONG) { ffppnj(fptr, group, firstelem, nelem, (long *) array, *(long *) nulval, status); } else if (datatype == TLONGLONG) { ffppnjj(fptr, group, firstelem, nelem, (LONGLONG *) array, *(LONGLONG *) nulval, status); } else if (datatype == TFLOAT) { ffppne(fptr, group, firstelem, nelem, (float *) array, *(float *) nulval, status); } else if (datatype == TDOUBLE) { ffppnd(fptr, group, firstelem, nelem, (double *) array, *(double *) nulval, status); } else *status = BAD_DATATYPE; return(*status); } /*--------------------------------------------------------------------------*/ int ffppxnll( fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the value */ LONGLONG *firstpix, /* I - first vector element to write(1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ void *array, /* I - array of values that are written */ void *nulval, /* I - pointer to the null value */ int *status) /* IO - error status */ /* Write an array of values to the primary array. The datatype of the input array is defined by the 2nd argument. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). This routine supports writing to large images with more than 2**31 pixels. */ { int naxis, ii; long group = 1; LONGLONG firstelem, dimsize = 1, naxes[9]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (nulval == NULL) /* null value not defined? */ { ffppxll(fptr, datatype, firstpix, nelem, array, status); return(*status); } /* get the size of the image */ ffgidm(fptr, &naxis, status); ffgiszll(fptr, 9, naxes, status); firstelem = 0; for (ii=0; ii < naxis; ii++) { firstelem += ((firstpix[ii] - 1) * dimsize); dimsize *= naxes[ii]; } firstelem++; if (datatype == TBYTE) { ffppnb(fptr, group, firstelem, nelem, (unsigned char *) array, *(unsigned char *) nulval, status); } else if (datatype == TSBYTE) { ffppnsb(fptr, group, firstelem, nelem, (signed char *) array, *(signed char *) nulval, status); } else if (datatype == TUSHORT) { ffppnui(fptr, group, firstelem, nelem, (unsigned short *) array, *(unsigned short *) nulval,status); } else if (datatype == TSHORT) { ffppni(fptr, group, firstelem, nelem, (short *) array, *(short *) nulval, status); } else if (datatype == TUINT) { ffppnuk(fptr, group, firstelem, nelem, (unsigned int *) array, *(unsigned int *) nulval, status); } else if (datatype == TINT) { ffppnk(fptr, group, firstelem, nelem, (int *) array, *(int *) nulval, status); } else if (datatype == TULONG) { ffppnuj(fptr, group, firstelem, nelem, (unsigned long *) array, *(unsigned long *) nulval,status); } else if (datatype == TLONG) { ffppnj(fptr, group, firstelem, nelem, (long *) array, *(long *) nulval, status); } else if (datatype == TLONGLONG) { ffppnjj(fptr, group, firstelem, nelem, (LONGLONG *) array, *(LONGLONG *) nulval, status); } else if (datatype == TFLOAT) { ffppne(fptr, group, firstelem, nelem, (float *) array, *(float *) nulval, status); } else if (datatype == TDOUBLE) { ffppnd(fptr, group, firstelem, nelem, (double *) array, *(double *) nulval, status); } else *status = BAD_DATATYPE; return(*status); } /*--------------------------------------------------------------------------*/ int ffppr( fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the value */ LONGLONG firstelem, /* I - first vector element to write(1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ void *array, /* I - array of values that are written */ int *status) /* IO - error status */ /* Write an array of values to the primary array. The datatype of the input array is defined by the 2nd argument. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long group = 1; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (datatype == TBYTE) { ffpprb(fptr, group, firstelem, nelem, (unsigned char *) array, status); } else if (datatype == TSBYTE) { ffpprsb(fptr, group, firstelem, nelem, (signed char *) array, status); } else if (datatype == TUSHORT) { ffpprui(fptr, group, firstelem, nelem, (unsigned short *) array, status); } else if (datatype == TSHORT) { ffppri(fptr, group, firstelem, nelem, (short *) array, status); } else if (datatype == TUINT) { ffppruk(fptr, group, firstelem, nelem, (unsigned int *) array, status); } else if (datatype == TINT) { ffpprk(fptr, group, firstelem, nelem, (int *) array, status); } else if (datatype == TULONG) { ffppruj(fptr, group, firstelem, nelem, (unsigned long *) array, status); } else if (datatype == TLONG) { ffpprj(fptr, group, firstelem, nelem, (long *) array, status); } else if (datatype == TLONGLONG) { ffpprjj(fptr, group, firstelem, nelem, (LONGLONG *) array, status); } else if (datatype == TFLOAT) { ffppre(fptr, group, firstelem, nelem, (float *) array, status); } else if (datatype == TDOUBLE) { ffpprd(fptr, group, firstelem, nelem, (double *) array, status); } else *status = BAD_DATATYPE; return(*status); } /*--------------------------------------------------------------------------*/ int ffppn( fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the value */ LONGLONG firstelem, /* I - first vector element to write(1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ void *array, /* I - array of values that are written */ void *nulval, /* I - pointer to the null value */ int *status) /* IO - error status */ /* Write an array of values to the primary array. The datatype of the input array is defined by the 2nd argument. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long group = 1; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (nulval == NULL) /* null value not defined? */ { ffppr(fptr, datatype, firstelem, nelem, array, status); return(*status); } if (datatype == TBYTE) { ffppnb(fptr, group, firstelem, nelem, (unsigned char *) array, *(unsigned char *) nulval, status); } else if (datatype == TSBYTE) { ffppnsb(fptr, group, firstelem, nelem, (signed char *) array, *(signed char *) nulval, status); } else if (datatype == TUSHORT) { ffppnui(fptr, group, firstelem, nelem, (unsigned short *) array, *(unsigned short *) nulval,status); } else if (datatype == TSHORT) { ffppni(fptr, group, firstelem, nelem, (short *) array, *(short *) nulval, status); } else if (datatype == TUINT) { ffppnuk(fptr, group, firstelem, nelem, (unsigned int *) array, *(unsigned int *) nulval, status); } else if (datatype == TINT) { ffppnk(fptr, group, firstelem, nelem, (int *) array, *(int *) nulval, status); } else if (datatype == TULONG) { ffppnuj(fptr, group, firstelem, nelem, (unsigned long *) array, *(unsigned long *) nulval,status); } else if (datatype == TLONG) { ffppnj(fptr, group, firstelem, nelem, (long *) array, *(long *) nulval, status); } else if (datatype == TLONGLONG) { ffppnjj(fptr, group, firstelem, nelem, (LONGLONG *) array, *(LONGLONG *) nulval, status); } else if (datatype == TFLOAT) { ffppne(fptr, group, firstelem, nelem, (float *) array, *(float *) nulval, status); } else if (datatype == TDOUBLE) { ffppnd(fptr, group, firstelem, nelem, (double *) array, *(double *) nulval, status); } else *status = BAD_DATATYPE; return(*status); } /*--------------------------------------------------------------------------*/ int ffpss( fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the value */ long *blc, /* I - 'bottom left corner' of the subsection */ long *trc , /* I - 'top right corner' of the subsection */ void *array, /* I - array of values that are written */ int *status) /* IO - error status */ /* Write a section of values to the primary array. The datatype of the input array is defined by the 2nd argument. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). This routine supports writing to large images with more than 2**31 pixels. */ { int naxis; long naxes[9]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* get the size of the image */ ffgidm(fptr, &naxis, status); ffgisz(fptr, 9, naxes, status); if (datatype == TBYTE) { ffpssb(fptr, 1, naxis, naxes, blc, trc, (unsigned char *) array, status); } else if (datatype == TSBYTE) { ffpsssb(fptr, 1, naxis, naxes, blc, trc, (signed char *) array, status); } else if (datatype == TUSHORT) { ffpssui(fptr, 1, naxis, naxes, blc, trc, (unsigned short *) array, status); } else if (datatype == TSHORT) { ffpssi(fptr, 1, naxis, naxes, blc, trc, (short *) array, status); } else if (datatype == TUINT) { ffpssuk(fptr, 1, naxis, naxes, blc, trc, (unsigned int *) array, status); } else if (datatype == TINT) { ffpssk(fptr, 1, naxis, naxes, blc, trc, (int *) array, status); } else if (datatype == TULONG) { ffpssuj(fptr, 1, naxis, naxes, blc, trc, (unsigned long *) array, status); } else if (datatype == TLONG) { ffpssj(fptr, 1, naxis, naxes, blc, trc, (long *) array, status); } else if (datatype == TLONGLONG) { ffpssjj(fptr, 1, naxis, naxes, blc, trc, (LONGLONG *) array, status); } else if (datatype == TFLOAT) { ffpsse(fptr, 1, naxis, naxes, blc, trc, (float *) array, status); } else if (datatype == TDOUBLE) { ffpssd(fptr, 1, naxis, naxes, blc, trc, (double *) array, status); } else *status = BAD_DATATYPE; return(*status); } /*--------------------------------------------------------------------------*/ int ffpcl( fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the value */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of elements to write */ void *array, /* I - array of values that are written */ int *status) /* IO - error status */ /* Write an array of values to a table column. The datatype of the input array is defined by the 2nd argument. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS column is not the same as the array being written). */ { if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (datatype == TBIT) { ffpclx(fptr, colnum, firstrow, (long) firstelem, (long) nelem, (char *) array, status); } else if (datatype == TBYTE) { ffpclb(fptr, colnum, firstrow, firstelem, nelem, (unsigned char *) array, status); } else if (datatype == TSBYTE) { ffpclsb(fptr, colnum, firstrow, firstelem, nelem, (signed char *) array, status); } else if (datatype == TUSHORT) { ffpclui(fptr, colnum, firstrow, firstelem, nelem, (unsigned short *) array, status); } else if (datatype == TSHORT) { ffpcli(fptr, colnum, firstrow, firstelem, nelem, (short *) array, status); } else if (datatype == TUINT) { ffpcluk(fptr, colnum, firstrow, firstelem, nelem, (unsigned int *) array, status); } else if (datatype == TINT) { ffpclk(fptr, colnum, firstrow, firstelem, nelem, (int *) array, status); } else if (datatype == TULONG) { ffpcluj(fptr, colnum, firstrow, firstelem, nelem, (unsigned long *) array, status); } else if (datatype == TLONG) { ffpclj(fptr, colnum, firstrow, firstelem, nelem, (long *) array, status); } else if (datatype == TLONGLONG) { ffpcljj(fptr, colnum, firstrow, firstelem, nelem, (LONGLONG *) array, status); } else if (datatype == TFLOAT) { ffpcle(fptr, colnum, firstrow, firstelem, nelem, (float *) array, status); } else if (datatype == TDOUBLE) { ffpcld(fptr, colnum, firstrow, firstelem, nelem, (double *) array, status); } else if (datatype == TCOMPLEX) { ffpcle(fptr, colnum, firstrow, (firstelem - 1) * 2 + 1, nelem * 2, (float *) array, status); } else if (datatype == TDBLCOMPLEX) { ffpcld(fptr, colnum, firstrow, (firstelem - 1) * 2 + 1, nelem * 2, (double *) array, status); } else if (datatype == TLOGICAL) { ffpcll(fptr, colnum, firstrow, firstelem, nelem, (char *) array, status); } else if (datatype == TSTRING) { ffpcls(fptr, colnum, firstrow, firstelem, nelem, (char **) array, status); } else *status = BAD_DATATYPE; return(*status); } /*--------------------------------------------------------------------------*/ int ffpcn( fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the value */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of elements to write */ void *array, /* I - array of values that are written */ void *nulval, /* I - pointer to the null value */ int *status) /* IO - error status */ /* Write an array of values to a table column. The datatype of the input array is defined by the 2nd argument. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS column is not the same as the array being written). */ { if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (nulval == NULL) /* null value not defined? */ { ffpcl(fptr, datatype, colnum, firstrow, firstelem, nelem, array, status); return(*status); } if (datatype == TBYTE) { ffpcnb(fptr, colnum, firstrow, firstelem, nelem, (unsigned char *) array, *(unsigned char *) nulval, status); } else if (datatype == TSBYTE) { ffpcnsb(fptr, colnum, firstrow, firstelem, nelem, (signed char *) array, *(signed char *) nulval, status); } else if (datatype == TUSHORT) { ffpcnui(fptr, colnum, firstrow, firstelem, nelem, (unsigned short *) array, *(unsigned short *) nulval, status); } else if (datatype == TSHORT) { ffpcni(fptr, colnum, firstrow, firstelem, nelem, (short *) array, *(unsigned short *) nulval, status); } else if (datatype == TUINT) { ffpcnuk(fptr, colnum, firstrow, firstelem, nelem, (unsigned int *) array, *(unsigned int *) nulval, status); } else if (datatype == TINT) { ffpcnk(fptr, colnum, firstrow, firstelem, nelem, (int *) array, *(int *) nulval, status); } else if (datatype == TULONG) { ffpcnuj(fptr, colnum, firstrow, firstelem, nelem, (unsigned long *) array, *(unsigned long *) nulval, status); } else if (datatype == TLONG) { ffpcnj(fptr, colnum, firstrow, firstelem, nelem, (long *) array, *(long *) nulval, status); } else if (datatype == TLONGLONG) { ffpcnjj(fptr, colnum, firstrow, firstelem, nelem, (LONGLONG *) array, *(LONGLONG *) nulval, status); } else if (datatype == TFLOAT) { ffpcne(fptr, colnum, firstrow, firstelem, nelem, (float *) array, *(float *) nulval, status); } else if (datatype == TDOUBLE) { ffpcnd(fptr, colnum, firstrow, firstelem, nelem, (double *) array, *(double *) nulval, status); } else if (datatype == TCOMPLEX) { ffpcne(fptr, colnum, firstrow, (firstelem - 1) * 2 + 1, nelem * 2, (float *) array, *(float *) nulval, status); } else if (datatype == TDBLCOMPLEX) { ffpcnd(fptr, colnum, firstrow, (firstelem - 1) * 2 + 1, nelem * 2, (double *) array, *(double *) nulval, status); } else if (datatype == TLOGICAL) { ffpcnl(fptr, colnum, firstrow, firstelem, nelem, (char *) array, *(char *) nulval, status); } else if (datatype == TSTRING) { ffpcns(fptr, colnum, firstrow, firstelem, nelem, (char **) array, (char *) nulval, status); } else *status = BAD_DATATYPE; return(*status); } /*--------------------------------------------------------------------------*/ int fits_iter_set_by_name(iteratorCol *col, /* I - iterator col structure */ fitsfile *fptr, /* I - FITS file pointer */ char *colname, /* I - column name */ int datatype, /* I - column datatype */ int iotype) /* I - InputCol, InputOutputCol, or OutputCol */ /* set all the parameters for an iterator column, by column name */ { col->fptr = fptr; strcpy(col->colname, colname); col->colnum = 0; /* set column number undefined since name is given */ col->datatype = datatype; col->iotype = iotype; return(0); } /*--------------------------------------------------------------------------*/ int fits_iter_set_by_num(iteratorCol *col, /* I - iterator column structure */ fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - column number */ int datatype, /* I - column datatype */ int iotype) /* I - InputCol, InputOutputCol, or OutputCol */ /* set all the parameters for an iterator column, by column number */ { col->fptr = fptr; col->colnum = colnum; col->datatype = datatype; col->iotype = iotype; return(0); } /*--------------------------------------------------------------------------*/ int fits_iter_set_file(iteratorCol *col, /* I - iterator column structure */ fitsfile *fptr) /* I - FITS file pointer */ /* set iterator column parameter */ { col->fptr = fptr; return(0); } /*--------------------------------------------------------------------------*/ int fits_iter_set_colname(iteratorCol *col, /* I - iterator col structure */ char *colname) /* I - column name */ /* set iterator column parameter */ { strcpy(col->colname, colname); col->colnum = 0; /* set column number undefined since name is given */ return(0); } /*--------------------------------------------------------------------------*/ int fits_iter_set_colnum(iteratorCol *col, /* I - iterator column structure */ int colnum) /* I - column number */ /* set iterator column parameter */ { col->colnum = colnum; return(0); } /*--------------------------------------------------------------------------*/ int fits_iter_set_datatype(iteratorCol *col, /* I - iterator col structure */ int datatype) /* I - column datatype */ /* set iterator column parameter */ { col->datatype = datatype; return(0); } /*--------------------------------------------------------------------------*/ int fits_iter_set_iotype(iteratorCol *col, /* I - iterator column structure */ int iotype) /* I - InputCol, InputOutputCol, or OutputCol */ /* set iterator column parameter */ { col->iotype = iotype; return(0); } /*--------------------------------------------------------------------------*/ fitsfile * fits_iter_get_file(iteratorCol *col) /* I -iterator col structure */ /* get iterator column parameter */ { return(col->fptr); } /*--------------------------------------------------------------------------*/ char * fits_iter_get_colname(iteratorCol *col) /* I -iterator col structure */ /* get iterator column parameter */ { return(col->colname); } /*--------------------------------------------------------------------------*/ int fits_iter_get_colnum(iteratorCol *col) /* I - iterator column structure */ /* get iterator column parameter */ { return(col->colnum); } /*--------------------------------------------------------------------------*/ int fits_iter_get_datatype(iteratorCol *col) /* I - iterator col structure */ /* get iterator column parameter */ { return(col->datatype); } /*--------------------------------------------------------------------------*/ int fits_iter_get_iotype(iteratorCol *col) /* I - iterator column structure */ /* get iterator column parameter */ { return(col->iotype); } /*--------------------------------------------------------------------------*/ void * fits_iter_get_array(iteratorCol *col) /* I - iterator col structure */ /* get iterator column parameter */ { return(col->array); } /*--------------------------------------------------------------------------*/ long fits_iter_get_tlmin(iteratorCol *col) /* I - iterator column structure */ /* get iterator column parameter */ { return(col->tlmin); } /*--------------------------------------------------------------------------*/ long fits_iter_get_tlmax(iteratorCol *col) /* I - iterator column structure */ /* get iterator column parameter */ { return(col->tlmax); } /*--------------------------------------------------------------------------*/ long fits_iter_get_repeat(iteratorCol *col) /* I - iterator col structure */ /* get iterator column parameter */ { return(col->repeat); } /*--------------------------------------------------------------------------*/ char * fits_iter_get_tunit(iteratorCol *col) /* I - iterator col structure */ /* get iterator column parameter */ { return(col->tunit); } /*--------------------------------------------------------------------------*/ char * fits_iter_get_tdisp(iteratorCol *col) /* I -iterator col structure */ /* get iterator column parameter */ { return(col->tdisp); } /*--------------------------------------------------------------------------*/ int ffiter(int n_cols, iteratorCol *cols, long offset, long n_per_loop, int (*work_fn)(long total_n, long offset, long first_n, long n_values, int n_cols, iteratorCol *cols, void *userPointer), void *userPointer, int *status) /* The iterator function. This function will pass the specified columns from a FITS table or pixels from a FITS image to the user-supplied function. Depending on the size of the table or image, only a subset of the rows or pixels may be passed to the function on each call, in which case the function will be called multiple times until all the rows or pixels have been processed. */ { typedef struct /* structure to store the column null value */ { int nullsize; /* length of the null value, in bytes */ union { /* default null value for the column */ char *stringnull; unsigned char charnull; signed char scharnull; int intnull; short shortnull; long longnull; unsigned int uintnull; unsigned short ushortnull; unsigned long ulongnull; float floatnull; double doublenull; LONGLONG longlongnull; } null; } colNulls; void *dataptr, *defaultnull; colNulls *col; int ii, jj, tstatus, naxis, bitpix; int typecode, hdutype, jtype, type, anynul, nfiles, nbytes; long totaln, nleft, frow, felement, n_optimum, i_optimum, ntodo; long rept, rowrept, width, tnull, naxes[9] = {1,1,1,1,1,1,1,1,1}, groups; double zeros = 0.; char message[FLEN_ERRMSG], keyname[FLEN_KEYWORD], nullstr[FLEN_VALUE]; char **stringptr, *nullptr, *cptr; if (*status > 0) return(*status); if (n_cols < 0 || n_cols > 999 ) { ffpmsg("Illegal number of columms (ffiter)"); return(*status = BAD_COL_NUM); /* negative number of columns */ } /*------------------------------------------------------------*/ /* Make sure column numbers and datatypes are in legal range */ /* and column numbers and datatypes are legal. */ /* Also fill in other parameters in the column structure. */ /*------------------------------------------------------------*/ ffghdt(cols[0].fptr, &hdutype, status); /* type of first HDU */ for (jj = 0; jj < n_cols; jj++) { /* check that output datatype code value is legal */ type = cols[jj].datatype; /* Allow variable length arrays for InputCol and InputOutputCol columns, but not for OutputCol columns. Variable length arrays have a negative type code value. */ if ((cols[jj].iotype != OutputCol) && (type<0)) { type*=-1; } if (type != 0 && type != TBYTE && type != TSBYTE && type != TLOGICAL && type != TSTRING && type != TSHORT && type != TINT && type != TLONG && type != TFLOAT && type != TDOUBLE && type != TCOMPLEX && type != TULONG && type != TUSHORT && type != TDBLCOMPLEX && type != TLONGLONG ) { if (type < 0) { sprintf(message, "Variable length array not allowed for output column number %d (ffiter)", jj + 1); } else { sprintf(message, "Illegal datatype for column number %d: %d (ffiter)", jj + 1, cols[jj].datatype); } ffpmsg(message); return(*status = BAD_DATATYPE); } /* initialize TLMINn, TLMAXn, column name, and display format */ cols[jj].tlmin = 0; cols[jj].tlmax = 0; cols[jj].tunit[0] = '\0'; cols[jj].tdisp[0] = '\0'; ffghdt(cols[jj].fptr, &jtype, status); /* get HDU type */ if (hdutype == IMAGE_HDU) /* operating on FITS images */ { if (jtype != IMAGE_HDU) { sprintf(message, "File %d not positioned to an image extension (ffiter)", jj + 1); return(*status = NOT_IMAGE); } /* since this is an image, set a dummy column number = 0 */ cols[jj].colnum = 0; strcpy(cols[jj].colname, "IMAGE"); /* dummy name for images */ tstatus = 0; ffgkys(cols[jj].fptr, "BUNIT", cols[jj].tunit, 0, &tstatus); } else /* operating on FITS tables */ { if (jtype == IMAGE_HDU) { sprintf(message, "File %d not positioned to a table extension (ffiter)", jj + 1); return(*status = NOT_TABLE); } if (cols[jj].colnum < 1) { /* find the column number for the named column */ if (ffgcno(cols[jj].fptr, CASEINSEN, cols[jj].colname, &cols[jj].colnum, status) ) { sprintf(message, "Column '%s' not found for column number %d (ffiter)", cols[jj].colname, jj + 1); ffpmsg(message); return(*status); } } /* check that the column number is valid */ if (cols[jj].colnum < 1 || cols[jj].colnum > ((cols[jj].fptr)->Fptr)->tfield) { sprintf(message, "Column %d has illegal table position number: %d (ffiter)", jj + 1, cols[jj].colnum); ffpmsg(message); return(*status = BAD_COL_NUM); } /* look for column description keywords and update structure */ tstatus = 0; ffkeyn("TLMIN", cols[jj].colnum, keyname, &tstatus); ffgkyj(cols[jj].fptr, keyname, &cols[jj].tlmin, 0, &tstatus); tstatus = 0; ffkeyn("TLMAX", cols[jj].colnum, keyname, &tstatus); ffgkyj(cols[jj].fptr, keyname, &cols[jj].tlmax, 0, &tstatus); tstatus = 0; ffkeyn("TTYPE", cols[jj].colnum, keyname, &tstatus); ffgkys(cols[jj].fptr, keyname, cols[jj].colname, 0, &tstatus); if (tstatus) cols[jj].colname[0] = '\0'; tstatus = 0; ffkeyn("TUNIT", cols[jj].colnum, keyname, &tstatus); ffgkys(cols[jj].fptr, keyname, cols[jj].tunit, 0, &tstatus); tstatus = 0; ffkeyn("TDISP", cols[jj].colnum, keyname, &tstatus); ffgkys(cols[jj].fptr, keyname, cols[jj].tdisp, 0, &tstatus); } } /* end of loop over all columns */ /*-----------------------------------------------------------------*/ /* use the first file to set the total number of values to process */ /*-----------------------------------------------------------------*/ offset = maxvalue(offset, 0L); /* make sure offset is legal */ if (hdutype == IMAGE_HDU) /* get total number of pixels in the image */ { fits_get_img_dim(cols[0].fptr, &naxis, status); fits_get_img_size(cols[0].fptr, 9, naxes, status); tstatus = 0; ffgkyj(cols[0].fptr, "GROUPS", &groups, NULL, &tstatus); if (!tstatus && groups && (naxis > 1) && (naxes[0] == 0) ) { /* this is a random groups file, with NAXIS1 = 0 */ /* Use GCOUNT, the number of groups, as the first multiplier */ /* to calculate the total number of pixels in all the groups. */ ffgkyj(cols[0].fptr, "GCOUNT", &totaln, NULL, status); } else { totaln = naxes[0]; } for (ii = 1; ii < naxis; ii++) totaln *= naxes[ii]; frow = 1; felement = 1 + offset; } else /* get total number or rows in the table */ { ffgkyj(cols[0].fptr, "NAXIS2", &totaln, 0, status); frow = 1 + offset; felement = 1; } /* adjust total by the input starting offset value */ totaln -= offset; totaln = maxvalue(totaln, 0L); /* don't allow negative number */ /*------------------------------------------------------------------*/ /* Determine number of values to pass to work function on each loop */ /*------------------------------------------------------------------*/ if (n_per_loop == 0) { /* Determine optimum number of values for each iteration. */ /* Look at all the fitsfile pointers to determine the number */ /* of unique files. */ nfiles = 1; ffgrsz(cols[0].fptr, &n_optimum, status); for (jj = 1; jj < n_cols; jj++) { for (ii = 0; ii < jj; ii++) { if (cols[ii].fptr == cols[jj].fptr) break; } if (ii == jj) /* this is a new file */ { nfiles++; ffgrsz(cols[jj].fptr, &i_optimum, status); n_optimum = minvalue(n_optimum, i_optimum); } } /* divid n_optimum by the number of files that will be processed */ n_optimum = n_optimum / nfiles; n_optimum = maxvalue(n_optimum, 1); } else if (n_per_loop < 0) /* must pass all the values at one time */ { n_optimum = totaln; } else /* calling routine specified how many values to pass at a time */ { n_optimum = minvalue(n_per_loop, totaln); } /*--------------------------------------*/ /* allocate work arrays for each column */ /* and determine the null pixel value */ /*--------------------------------------*/ col = calloc(n_cols, sizeof(colNulls) ); /* memory for the null values */ if (!col) { ffpmsg("ffiter failed to allocate memory for null values"); *status = MEMORY_ALLOCATION; /* memory allocation failed */ return(*status); } for (jj = 0; jj < n_cols; jj++) { /* get image or column datatype and vector length */ if (hdutype == IMAGE_HDU) /* get total number of pixels in the image */ { fits_get_img_type(cols[jj].fptr, &bitpix, status); switch(bitpix) { case BYTE_IMG: typecode = TBYTE; break; case SHORT_IMG: typecode = TSHORT; break; case LONG_IMG: typecode = TLONG; break; case FLOAT_IMG: typecode = TFLOAT; break; case DOUBLE_IMG: typecode = TDOUBLE; break; case LONGLONG_IMG: typecode = TLONGLONG; break; } } else { if (ffgtcl(cols[jj].fptr, cols[jj].colnum, &typecode, &rept, &width, status) > 0) goto cleanup; if (typecode < 0) { /* if any variable length arrays, then the */ n_optimum = 1; /* must process the table 1 row at a time */ /* Allow variable length arrays for InputCol and InputOutputCol columns, but not for OutputCol columns. Variable length arrays have a negative type code value. */ if (cols[jj].iotype == OutputCol) { sprintf(message, "Variable length array not allowed for output column number %d (ffiter)", jj + 1); ffpmsg(message); return(*status = BAD_DATATYPE); } } } /* special case where sizeof(long) = 8: use TINT instead of TLONG */ if (abs(typecode) == TLONG && sizeof(long) == 8 && sizeof(int) == 4) { if(typecode<0) { typecode = -TINT; } else { typecode = TINT; } } /* Special case: interprete 'X' column as 'B' */ if (abs(typecode) == TBIT) { typecode = typecode / TBIT * TBYTE; rept = (rept + 7) / 8; } if (cols[jj].datatype == 0) /* output datatype not specified? */ { /* special case if sizeof(long) = 8: use TINT instead of TLONG */ if (abs(typecode) == TLONG && sizeof(long) == 8 && sizeof(int) == 4) cols[jj].datatype = TINT; else cols[jj].datatype = abs(typecode); } /* calc total number of elements to do on each iteration */ if (hdutype == IMAGE_HDU || cols[jj].datatype == TSTRING) { ntodo = n_optimum; cols[jj].repeat = 1; /* get the BLANK keyword value, if it exists */ if (abs(typecode) == TBYTE || abs(typecode) == TSHORT || abs(typecode) == TLONG) { tstatus = 0; ffgkyj(cols[jj].fptr, "BLANK", &tnull, 0, &tstatus); if (tstatus) { tnull = 0L; /* no null values */ } } } else { if (typecode < 0) { /* get max size of the variable length vector; dont't trust the value given by the TFORM keyword */ rept = 1; for (ii = 0; ii < totaln; ii++) { ffgdes(cols[jj].fptr, cols[jj].colnum, frow + ii, &rowrept, NULL, status); rept = maxvalue(rept, rowrept); } } ntodo = n_optimum * rept; /* vector columns */ cols[jj].repeat = rept; /* get the TNULL keyword value, if it exists */ if (abs(typecode) == TBYTE || abs(typecode) == TSHORT || abs(typecode) == TLONG) { tstatus = 0; if (hdutype == ASCII_TBL) /* TNULLn value is a string */ { ffkeyn("TNULL", cols[jj].colnum, keyname, &tstatus); ffgkys(cols[jj].fptr, keyname, nullstr, 0, &tstatus); if (tstatus) { tnull = 0L; /* keyword doesn't exist; no null values */ } else { cptr = nullstr; while (*cptr == ' ') /* skip over leading blanks */ cptr++; if (*cptr == '\0') /* TNULLn is all blanks? */ tnull = LONG_MIN; else { /* attempt to read TNULLn string as an integer */ ffc2ii(nullstr, &tnull, &tstatus); if (tstatus) tnull = LONG_MIN; /* choose smallest value */ } /* to represent nulls */ } } else /* Binary table; TNULLn value is an integer */ { ffkeyn("TNULL", cols[jj].colnum, keyname, &tstatus); ffgkyj(cols[jj].fptr, keyname, &tnull, 0, &tstatus); if (tstatus) { tnull = 0L; /* keyword doesn't exist; no null values */ } else if (tnull == 0) { /* worst possible case: a value of 0 is used to */ /* represent nulls in the FITS file. We have to */ /* use a non-zero null value here (zero is used to */ /* mean there are no null values in the array) so we */ /* will use the smallest possible integer instead. */ tnull = LONG_MIN; /* choose smallest possible value */ } } } } /* Note that the data array starts with 2nd element; */ /* 1st element of the array gives the null data value */ switch (cols[jj].datatype) { case TBYTE: cols[jj].array = calloc(ntodo + 1, sizeof(char)); col[jj].nullsize = sizeof(char); /* number of bytes per value */ if (abs(typecode) == TBYTE || abs(typecode) == TSHORT || abs(typecode) == TLONG) { tnull = minvalue(tnull, 255); tnull = maxvalue(tnull, 0); col[jj].null.charnull = (unsigned char) tnull; } else { col[jj].null.charnull = (unsigned char) 255; /* use 255 as null */ } break; case TSBYTE: cols[jj].array = calloc(ntodo + 1, sizeof(char)); col[jj].nullsize = sizeof(char); /* number of bytes per value */ if (abs(typecode) == TBYTE || abs(typecode) == TSHORT || abs(typecode) == TLONG) { tnull = minvalue(tnull, 127); tnull = maxvalue(tnull, -128); col[jj].null.scharnull = (signed char) tnull; } else { col[jj].null.scharnull = (signed char) -128; /* use -128 null */ } break; case TSHORT: cols[jj].array = calloc(ntodo + 1, sizeof(short)); col[jj].nullsize = sizeof(short); /* number of bytes per value */ if (abs(typecode) == TBYTE || abs(typecode) == TSHORT || abs(typecode) == TLONG) { tnull = minvalue(tnull, SHRT_MAX); tnull = maxvalue(tnull, SHRT_MIN); col[jj].null.shortnull = (short) tnull; } else { col[jj].null.shortnull = SHRT_MIN; /* use minimum as null */ } break; case TUSHORT: cols[jj].array = calloc(ntodo + 1, sizeof(unsigned short)); col[jj].nullsize = sizeof(unsigned short); /* bytes per value */ if (abs(typecode) == TBYTE || abs(typecode) == TSHORT || abs(typecode) == TLONG) { tnull = minvalue(tnull, (long) USHRT_MAX); tnull = maxvalue(tnull, 0); /* don't allow negative value */ col[jj].null.ushortnull = (unsigned short) tnull; } else { col[jj].null.ushortnull = USHRT_MAX; /* use maximum null */ } break; case TINT: cols[jj].array = calloc(sizeof(int), ntodo + 1); col[jj].nullsize = sizeof(int); /* number of bytes per value */ if (abs(typecode) == TBYTE || abs(typecode) == TSHORT || abs(typecode) == TLONG) { tnull = minvalue(tnull, INT_MAX); tnull = maxvalue(tnull, INT_MIN); col[jj].null.intnull = (int) tnull; } else { col[jj].null.intnull = INT_MIN; /* use minimum as null */ } break; case TUINT: cols[jj].array = calloc(ntodo + 1, sizeof(unsigned int)); col[jj].nullsize = sizeof(unsigned int); /* bytes per value */ if (abs(typecode) == TBYTE || abs(typecode) == TSHORT || abs(typecode) == TLONG) { tnull = minvalue(tnull, INT32_MAX); tnull = maxvalue(tnull, 0); col[jj].null.uintnull = (unsigned int) tnull; } else { col[jj].null.intnull = UINT_MAX; /* use maximum as null */ } break; case TLONG: cols[jj].array = calloc(ntodo + 1, sizeof(long)); col[jj].nullsize = sizeof(long); /* number of bytes per value */ if (abs(typecode) == TBYTE || abs(typecode) == TSHORT || abs(typecode) == TLONG) { col[jj].null.longnull = tnull; } else { col[jj].null.longnull = LONG_MIN; /* use minimum as null */ } break; case TULONG: cols[jj].array = calloc(ntodo + 1, sizeof(unsigned long)); col[jj].nullsize = sizeof(unsigned long); /* bytes per value */ if (abs(typecode) == TBYTE || abs(typecode) == TSHORT || abs(typecode) == TLONG) { if (tnull < 0) /* can't use a negative null value */ col[jj].null.ulongnull = LONG_MAX; else col[jj].null.ulongnull = (unsigned long) tnull; } else { col[jj].null.ulongnull = LONG_MAX; /* use maximum as null */ } break; case TFLOAT: cols[jj].array = calloc(ntodo + 1, sizeof(float)); col[jj].nullsize = sizeof(float); /* number of bytes per value */ if (abs(typecode) == TBYTE || abs(typecode) == TSHORT || abs(typecode) == TLONG) { col[jj].null.floatnull = (float) tnull; } else { col[jj].null.floatnull = FLOATNULLVALUE; /* special value */ } break; case TCOMPLEX: cols[jj].array = calloc((ntodo * 2) + 1, sizeof(float)); col[jj].nullsize = sizeof(float); /* number of bytes per value */ col[jj].null.floatnull = FLOATNULLVALUE; /* special value */ break; case TDOUBLE: cols[jj].array = calloc(ntodo + 1, sizeof(double)); col[jj].nullsize = sizeof(double); /* number of bytes per value */ if (abs(typecode) == TBYTE || abs(typecode) == TSHORT || abs(typecode) == TLONG) { col[jj].null.doublenull = (double) tnull; } else { col[jj].null.doublenull = DOUBLENULLVALUE; /* special value */ } break; case TDBLCOMPLEX: cols[jj].array = calloc((ntodo * 2) + 1, sizeof(double)); col[jj].nullsize = sizeof(double); /* number of bytes per value */ col[jj].null.doublenull = DOUBLENULLVALUE; /* special value */ break; case TSTRING: /* allocate array of pointers to all the strings */ if( hdutype==ASCII_TBL ) rept = width; stringptr = calloc((ntodo + 1) , sizeof(stringptr)); cols[jj].array = stringptr; col[jj].nullsize = rept + 1; /* number of bytes per value */ if (stringptr) { /* allocate string to store the null string value */ col[jj].null.stringnull = calloc(rept + 1, sizeof(char) ); col[jj].null.stringnull[1] = 1; /* to make sure string != 0 */ /* allocate big block for the array of table column strings */ stringptr[0] = calloc((ntodo + 1) * (rept + 1), sizeof(char) ); if (stringptr[0]) { for (ii = 1; ii <= ntodo; ii++) { /* pointer to each string */ stringptr[ii] = stringptr[ii - 1] + (rept + 1); } /* get the TNULL keyword value, if it exists */ tstatus = 0; ffkeyn("TNULL", cols[jj].colnum, keyname, &tstatus); ffgkys(cols[jj].fptr, keyname, nullstr, 0, &tstatus); if (!tstatus) strncat(col[jj].null.stringnull, nullstr, rept); } else { ffpmsg("ffiter failed to allocate memory arrays"); *status = MEMORY_ALLOCATION; /* memory allocation failed */ goto cleanup; } } break; case TLOGICAL: cols[jj].array = calloc(ntodo + 1, sizeof(char)); col[jj].nullsize = sizeof(char); /* number of bytes per value */ /* use value = 2 to flag null values in logical columns */ col[jj].null.charnull = 2; break; case TLONGLONG: cols[jj].array = calloc(ntodo + 1, sizeof(LONGLONG)); col[jj].nullsize = sizeof(LONGLONG); /* number of bytes per value */ if (abs(typecode) == TBYTE || abs(typecode) == TSHORT || abs(typecode) == TLONG || abs(typecode) == TLONGLONG) { col[jj].null.longlongnull = tnull; } else { col[jj].null.longlongnull = LONGLONG_MIN; /* use minimum as null */ } break; default: sprintf(message, "Column %d datatype currently not supported: %d: (ffiter)", jj + 1, cols[jj].datatype); ffpmsg(message); *status = BAD_DATATYPE; goto cleanup; } /* end of switch block */ /* check that all the arrays were allocated successfully */ if (!cols[jj].array) { ffpmsg("ffiter failed to allocate memory arrays"); *status = MEMORY_ALLOCATION; /* memory allocation failed */ goto cleanup; } } /*--------------------------------------------------*/ /* main loop while there are values left to process */ /*--------------------------------------------------*/ nleft = totaln; while (nleft) { ntodo = minvalue(nleft, n_optimum); /* no. of values for this loop */ /* read input columns from FITS file(s) */ for (jj = 0; jj < n_cols; jj++) { if (cols[jj].iotype != OutputCol) { if (cols[jj].datatype == TSTRING) { stringptr = cols[jj].array; dataptr = stringptr + 1; defaultnull = col[jj].null.stringnull; /* ptr to the null value */ } else { dataptr = (char *) cols[jj].array + col[jj].nullsize; defaultnull = &col[jj].null.charnull; /* ptr to the null value */ } if (hdutype == IMAGE_HDU) { if (ffgpv(cols[jj].fptr, cols[jj].datatype, felement, cols[jj].repeat * ntodo, defaultnull, dataptr, &anynul, status) > 0) { break; } } else { if (ffgtcl(cols[jj].fptr, cols[jj].colnum, &typecode, &rept,&width, status) > 0) goto cleanup; if (typecode<0) { /* get size of the variable length vector */ ffgdes(cols[jj].fptr, cols[jj].colnum, frow,&cols[jj].repeat, NULL,status); } if (ffgcv(cols[jj].fptr, cols[jj].datatype, cols[jj].colnum, frow, felement, cols[jj].repeat * ntodo, defaultnull, dataptr, &anynul, status) > 0) { break; } } /* copy the appropriate null value into first array element */ if (anynul) /* are there any nulls in the data? */ { if (cols[jj].datatype == TSTRING) { stringptr = cols[jj].array; memcpy(*stringptr, col[jj].null.stringnull, col[jj].nullsize); } else { memcpy(cols[jj].array, defaultnull, col[jj].nullsize); } } else /* no null values so copy zero into first element */ { if (cols[jj].datatype == TSTRING) { stringptr = cols[jj].array; memset(*stringptr, 0, col[jj].nullsize); } else { memset(cols[jj].array, 0, col[jj].nullsize); } } } } if (*status > 0) break; /* looks like an error occurred; quit immediately */ /* call work function */ if (hdutype == IMAGE_HDU) *status = work_fn(totaln, offset, felement, ntodo, n_cols, cols, userPointer); else *status = work_fn(totaln, offset, frow, ntodo, n_cols, cols, userPointer); if (*status > 0 || *status < -1 ) break; /* looks like an error occurred; quit immediately */ /* write output columns before quiting if status = -1 */ tstatus = 0; for (jj = 0; jj < n_cols; jj++) { if (cols[jj].iotype != InputCol) { if (cols[jj].datatype == TSTRING) { stringptr = cols[jj].array; dataptr = stringptr + 1; nullptr = *stringptr; nbytes = 2; } else { dataptr = (char *) cols[jj].array + col[jj].nullsize; nullptr = (char *) cols[jj].array; nbytes = col[jj].nullsize; } if (memcmp(nullptr, &zeros, nbytes) ) { /* null value flag not zero; must check for and write nulls */ if (hdutype == IMAGE_HDU) { if (ffppn(cols[jj].fptr, cols[jj].datatype, felement, cols[jj].repeat * ntodo, dataptr, nullptr, &tstatus) > 0) break; } else { if (ffgtcl(cols[jj].fptr, cols[jj].colnum, &typecode, &rept,&width, status) > 0) goto cleanup; if (typecode<0) /* variable length array colum */ { ffgdes(cols[jj].fptr, cols[jj].colnum, frow,&cols[jj].repeat, NULL,status); } if (ffpcn(cols[jj].fptr, cols[jj].datatype, cols[jj].colnum, frow, felement, cols[jj].repeat * ntodo, dataptr, nullptr, &tstatus) > 0) break; } } else { /* no null values; just write the array */ if (hdutype == IMAGE_HDU) { if (ffppr(cols[jj].fptr, cols[jj].datatype, felement, cols[jj].repeat * ntodo, dataptr, &tstatus) > 0) break; } else { if (ffgtcl(cols[jj].fptr, cols[jj].colnum, &typecode, &rept,&width, status) > 0) goto cleanup; if (typecode<0) /* variable length array column */ { ffgdes(cols[jj].fptr, cols[jj].colnum, frow,&cols[jj].repeat, NULL,status); } if (ffpcl(cols[jj].fptr, cols[jj].datatype, cols[jj].colnum, frow, felement, cols[jj].repeat * ntodo, dataptr, &tstatus) > 0) break; } } } } if (*status == 0) *status = tstatus; /* propagate any error status from the writes */ if (*status) break; /* exit on any error */ nleft -= ntodo; if (hdutype == IMAGE_HDU) felement += ntodo; else frow += ntodo; } cleanup: /*----------------------------------*/ /* free work arrays for the columns */ /*----------------------------------*/ for (jj = 0; jj < n_cols; jj++) { if (cols[jj].datatype == TSTRING) { if (cols[jj].array) { stringptr = cols[jj].array; free(*stringptr); /* free the block of strings */ free(col[jj].null.stringnull); /* free the null string */ } } if (cols[jj].array) free(cols[jj].array); /* memory for the array of values from the col */ } free(col); /* the structure containing the null values */ return(*status); } healpy-1.8.1/cfitsio/longnam.h0000654000175000017530000005010012272000775016655 0ustar zoncaplanck00000000000000#ifndef _LONGNAME_H #define _LONGNAME_H #define fits_parse_input_url ffiurl #define fits_parse_input_filename ffifile #define fits_parse_rootname ffrtnm #define fits_file_exists ffexist #define fits_parse_output_url ffourl #define fits_parse_extspec ffexts #define fits_parse_extnum ffextn #define fits_parse_binspec ffbins #define fits_parse_binrange ffbinr #define fits_parse_range ffrwrg #define fits_parse_rangell ffrwrgll #define fits_open_memfile ffomem /* use the following special macro to test that the fitsio.h include file that was used to build the CFITSIO library is compatible with the version as included when compiling the application program */ #define fits_open_file(A, B, C, D) ffopentest( CFITSIO_SONAME, A, B, C, D) #define fits_open_data ffdopn #define fits_open_table fftopn #define fits_open_image ffiopn #define fits_open_diskfile ffdkopn #define fits_reopen_file ffreopen #define fits_create_file ffinit #define fits_create_diskfile ffdkinit #define fits_create_memfile ffimem #define fits_create_template fftplt #define fits_flush_file ffflus #define fits_flush_buffer ffflsh #define fits_close_file ffclos #define fits_delete_file ffdelt #define fits_file_name ffflnm #define fits_file_mode ffflmd #define fits_url_type ffurlt #define fits_get_version ffvers #define fits_uppercase ffupch #define fits_get_errstatus ffgerr #define fits_write_errmsg ffpmsg #define fits_write_errmark ffpmrk #define fits_read_errmsg ffgmsg #define fits_clear_errmsg ffcmsg #define fits_clear_errmark ffcmrk #define fits_report_error ffrprt #define fits_compare_str ffcmps #define fits_test_keyword fftkey #define fits_test_record fftrec #define fits_null_check ffnchk #define fits_make_keyn ffkeyn #define fits_make_nkey ffnkey #define fits_make_key ffmkky #define fits_get_keyclass ffgkcl #define fits_get_keytype ffdtyp #define fits_get_inttype ffinttyp #define fits_parse_value ffpsvc #define fits_get_keyname ffgknm #define fits_parse_template ffgthd #define fits_ascii_tform ffasfm #define fits_binary_tform ffbnfm #define fits_binary_tformll ffbnfmll #define fits_get_tbcol ffgabc #define fits_get_rowsize ffgrsz #define fits_get_col_display_width ffgcdw #define fits_write_record ffprec #define fits_write_key ffpky #define fits_write_key_unit ffpunt #define fits_write_comment ffpcom #define fits_write_history ffphis #define fits_write_date ffpdat #define fits_get_system_time ffgstm #define fits_get_system_date ffgsdt #define fits_date2str ffdt2s #define fits_time2str fftm2s #define fits_str2date ffs2dt #define fits_str2time ffs2tm #define fits_write_key_longstr ffpkls #define fits_write_key_longwarn ffplsw #define fits_write_key_null ffpkyu #define fits_write_key_str ffpkys #define fits_write_key_log ffpkyl #define fits_write_key_lng ffpkyj #define fits_write_key_fixflt ffpkyf #define fits_write_key_flt ffpkye #define fits_write_key_fixdbl ffpkyg #define fits_write_key_dbl ffpkyd #define fits_write_key_fixcmp ffpkfc #define fits_write_key_cmp ffpkyc #define fits_write_key_fixdblcmp ffpkfm #define fits_write_key_dblcmp ffpkym #define fits_write_key_triple ffpkyt #define fits_write_tdim ffptdm #define fits_write_tdimll ffptdmll #define fits_write_keys_str ffpkns #define fits_write_keys_log ffpknl #define fits_write_keys_lng ffpknj #define fits_write_keys_fixflt ffpknf #define fits_write_keys_flt ffpkne #define fits_write_keys_fixdbl ffpkng #define fits_write_keys_dbl ffpknd #define fits_copy_key ffcpky #define fits_write_imghdr ffphps #define fits_write_imghdrll ffphpsll #define fits_write_grphdr ffphpr #define fits_write_grphdrll ffphprll #define fits_write_atblhdr ffphtb #define fits_write_btblhdr ffphbn #define fits_write_exthdr ffphext #define fits_write_key_template ffpktp #define fits_get_hdrspace ffghsp #define fits_get_hdrpos ffghps #define fits_movabs_key ffmaky #define fits_movrel_key ffmrky #define fits_find_nextkey ffgnxk #define fits_read_record ffgrec #define fits_read_card ffgcrd #define fits_read_str ffgstr #define fits_read_key_unit ffgunt #define fits_read_keyn ffgkyn #define fits_read_key ffgky #define fits_read_keyword ffgkey #define fits_read_key_str ffgkys #define fits_read_key_log ffgkyl #define fits_read_key_lng ffgkyj #define fits_read_key_lnglng ffgkyjj #define fits_read_key_flt ffgkye #define fits_read_key_dbl ffgkyd #define fits_read_key_cmp ffgkyc #define fits_read_key_dblcmp ffgkym #define fits_read_key_triple ffgkyt #define fits_read_key_longstr ffgkls #define fits_free_memory fffree #define fits_read_tdim ffgtdm #define fits_read_tdimll ffgtdmll #define fits_decode_tdim ffdtdm #define fits_decode_tdimll ffdtdmll #define fits_read_keys_str ffgkns #define fits_read_keys_log ffgknl #define fits_read_keys_lng ffgknj #define fits_read_keys_lnglng ffgknjj #define fits_read_keys_flt ffgkne #define fits_read_keys_dbl ffgknd #define fits_read_imghdr ffghpr #define fits_read_imghdrll ffghprll #define fits_read_atblhdr ffghtb #define fits_read_btblhdr ffghbn #define fits_read_atblhdrll ffghtbll #define fits_read_btblhdrll ffghbnll #define fits_hdr2str ffhdr2str #define fits_convert_hdr2str ffcnvthdr2str #define fits_update_card ffucrd #define fits_update_key ffuky #define fits_update_key_null ffukyu #define fits_update_key_str ffukys #define fits_update_key_longstr ffukls #define fits_update_key_log ffukyl #define fits_update_key_lng ffukyj #define fits_update_key_fixflt ffukyf #define fits_update_key_flt ffukye #define fits_update_key_fixdbl ffukyg #define fits_update_key_dbl ffukyd #define fits_update_key_fixcmp ffukfc #define fits_update_key_cmp ffukyc #define fits_update_key_fixdblcmp ffukfm #define fits_update_key_dblcmp ffukym #define fits_modify_record ffmrec #define fits_modify_card ffmcrd #define fits_modify_name ffmnam #define fits_modify_comment ffmcom #define fits_modify_key_null ffmkyu #define fits_modify_key_str ffmkys #define fits_modify_key_longstr ffmkls #define fits_modify_key_log ffmkyl #define fits_modify_key_lng ffmkyj #define fits_modify_key_fixflt ffmkyf #define fits_modify_key_flt ffmkye #define fits_modify_key_fixdbl ffmkyg #define fits_modify_key_dbl ffmkyd #define fits_modify_key_fixcmp ffmkfc #define fits_modify_key_cmp ffmkyc #define fits_modify_key_fixdblcmp ffmkfm #define fits_modify_key_dblcmp ffmkym #define fits_insert_record ffirec #define fits_insert_card ffikey #define fits_insert_key_null ffikyu #define fits_insert_key_str ffikys #define fits_insert_key_longstr ffikls #define fits_insert_key_log ffikyl #define fits_insert_key_lng ffikyj #define fits_insert_key_fixflt ffikyf #define fits_insert_key_flt ffikye #define fits_insert_key_fixdbl ffikyg #define fits_insert_key_dbl ffikyd #define fits_insert_key_fixcmp ffikfc #define fits_insert_key_cmp ffikyc #define fits_insert_key_fixdblcmp ffikfm #define fits_insert_key_dblcmp ffikym #define fits_delete_key ffdkey #define fits_delete_str ffdstr #define fits_delete_record ffdrec #define fits_get_hdu_num ffghdn #define fits_get_hdu_type ffghdt #define fits_get_hduaddr ffghad #define fits_get_hduaddrll ffghadll #define fits_get_hduoff ffghof #define fits_get_img_param ffgipr #define fits_get_img_paramll ffgiprll #define fits_get_img_type ffgidt #define fits_get_img_equivtype ffgiet #define fits_get_img_dim ffgidm #define fits_get_img_size ffgisz #define fits_get_img_sizell ffgiszll #define fits_movabs_hdu ffmahd #define fits_movrel_hdu ffmrhd #define fits_movnam_hdu ffmnhd #define fits_get_num_hdus ffthdu #define fits_create_img ffcrim #define fits_create_imgll ffcrimll #define fits_create_tbl ffcrtb #define fits_create_hdu ffcrhd #define fits_insert_img ffiimg #define fits_insert_imgll ffiimgll #define fits_insert_atbl ffitab #define fits_insert_btbl ffibin #define fits_resize_img ffrsim #define fits_resize_imgll ffrsimll #define fits_delete_hdu ffdhdu #define fits_copy_hdu ffcopy #define fits_copy_file ffcpfl #define fits_copy_header ffcphd #define fits_copy_data ffcpdt #define fits_write_hdu ffwrhdu #define fits_set_hdustruc ffrdef #define fits_set_hdrsize ffhdef #define fits_write_theap ffpthp #define fits_encode_chksum ffesum #define fits_decode_chksum ffdsum #define fits_write_chksum ffpcks #define fits_update_chksum ffupck #define fits_verify_chksum ffvcks #define fits_get_chksum ffgcks #define fits_set_bscale ffpscl #define fits_set_tscale fftscl #define fits_set_imgnull ffpnul #define fits_set_btblnull fftnul #define fits_set_atblnull ffsnul #define fits_get_colnum ffgcno #define fits_get_colname ffgcnn #define fits_get_coltype ffgtcl #define fits_get_coltypell ffgtclll #define fits_get_eqcoltype ffeqty #define fits_get_eqcoltypell ffeqtyll #define fits_get_num_rows ffgnrw #define fits_get_num_rowsll ffgnrwll #define fits_get_num_cols ffgncl #define fits_get_acolparms ffgacl #define fits_get_bcolparms ffgbcl #define fits_get_bcolparmsll ffgbclll #define fits_iterate_data ffiter #define fits_read_grppar_byt ffggpb #define fits_read_grppar_sbyt ffggpsb #define fits_read_grppar_usht ffggpui #define fits_read_grppar_ulng ffggpuj #define fits_read_grppar_sht ffggpi #define fits_read_grppar_lng ffggpj #define fits_read_grppar_lnglng ffggpjj #define fits_read_grppar_int ffggpk #define fits_read_grppar_uint ffggpuk #define fits_read_grppar_flt ffggpe #define fits_read_grppar_dbl ffggpd #define fits_read_pix ffgpxv #define fits_read_pixll ffgpxvll #define fits_read_pixnull ffgpxf #define fits_read_pixnullll ffgpxfll #define fits_read_img ffgpv #define fits_read_imgnull ffgpf #define fits_read_img_byt ffgpvb #define fits_read_img_sbyt ffgpvsb #define fits_read_img_usht ffgpvui #define fits_read_img_ulng ffgpvuj #define fits_read_img_sht ffgpvi #define fits_read_img_lng ffgpvj #define fits_read_img_lnglng ffgpvjj #define fits_read_img_uint ffgpvuk #define fits_read_img_int ffgpvk #define fits_read_img_flt ffgpve #define fits_read_img_dbl ffgpvd #define fits_read_imgnull_byt ffgpfb #define fits_read_imgnull_sbyt ffgpfsb #define fits_read_imgnull_usht ffgpfui #define fits_read_imgnull_ulng ffgpfuj #define fits_read_imgnull_sht ffgpfi #define fits_read_imgnull_lng ffgpfj #define fits_read_imgnull_lnglng ffgpfjj #define fits_read_imgnull_uint ffgpfuk #define fits_read_imgnull_int ffgpfk #define fits_read_imgnull_flt ffgpfe #define fits_read_imgnull_dbl ffgpfd #define fits_read_2d_byt ffg2db #define fits_read_2d_sbyt ffg2dsb #define fits_read_2d_usht ffg2dui #define fits_read_2d_ulng ffg2duj #define fits_read_2d_sht ffg2di #define fits_read_2d_lng ffg2dj #define fits_read_2d_lnglng ffg2djj #define fits_read_2d_uint ffg2duk #define fits_read_2d_int ffg2dk #define fits_read_2d_flt ffg2de #define fits_read_2d_dbl ffg2dd #define fits_read_3d_byt ffg3db #define fits_read_3d_sbyt ffg3dsb #define fits_read_3d_usht ffg3dui #define fits_read_3d_ulng ffg3duj #define fits_read_3d_sht ffg3di #define fits_read_3d_lng ffg3dj #define fits_read_3d_lnglng ffg3djj #define fits_read_3d_uint ffg3duk #define fits_read_3d_int ffg3dk #define fits_read_3d_flt ffg3de #define fits_read_3d_dbl ffg3dd #define fits_read_subset ffgsv #define fits_read_subset_byt ffgsvb #define fits_read_subset_sbyt ffgsvsb #define fits_read_subset_usht ffgsvui #define fits_read_subset_ulng ffgsvuj #define fits_read_subset_sht ffgsvi #define fits_read_subset_lng ffgsvj #define fits_read_subset_lnglng ffgsvjj #define fits_read_subset_uint ffgsvuk #define fits_read_subset_int ffgsvk #define fits_read_subset_flt ffgsve #define fits_read_subset_dbl ffgsvd #define fits_read_subsetnull_byt ffgsfb #define fits_read_subsetnull_sbyt ffgsfsb #define fits_read_subsetnull_usht ffgsfui #define fits_read_subsetnull_ulng ffgsfuj #define fits_read_subsetnull_sht ffgsfi #define fits_read_subsetnull_lng ffgsfj #define fits_read_subsetnull_lnglng ffgsfjj #define fits_read_subsetnull_uint ffgsfuk #define fits_read_subsetnull_int ffgsfk #define fits_read_subsetnull_flt ffgsfe #define fits_read_subsetnull_dbl ffgsfd #define ffcpimg fits_copy_image_section #define fits_compress_img fits_comp_img #define fits_decompress_img fits_decomp_img #define fits_read_col ffgcv #define fits_read_colnull ffgcf #define fits_read_col_str ffgcvs #define fits_read_col_log ffgcvl #define fits_read_col_byt ffgcvb #define fits_read_col_sbyt ffgcvsb #define fits_read_col_usht ffgcvui #define fits_read_col_ulng ffgcvuj #define fits_read_col_sht ffgcvi #define fits_read_col_lng ffgcvj #define fits_read_col_lnglng ffgcvjj #define fits_read_col_uint ffgcvuk #define fits_read_col_int ffgcvk #define fits_read_col_flt ffgcve #define fits_read_col_dbl ffgcvd #define fits_read_col_cmp ffgcvc #define fits_read_col_dblcmp ffgcvm #define fits_read_col_bit ffgcx #define fits_read_col_bit_usht ffgcxui #define fits_read_col_bit_uint ffgcxuk #define fits_read_colnull_str ffgcfs #define fits_read_colnull_log ffgcfl #define fits_read_colnull_byt ffgcfb #define fits_read_colnull_sbyt ffgcfsb #define fits_read_colnull_usht ffgcfui #define fits_read_colnull_ulng ffgcfuj #define fits_read_colnull_sht ffgcfi #define fits_read_colnull_lng ffgcfj #define fits_read_colnull_lnglng ffgcfjj #define fits_read_colnull_uint ffgcfuk #define fits_read_colnull_int ffgcfk #define fits_read_colnull_flt ffgcfe #define fits_read_colnull_dbl ffgcfd #define fits_read_colnull_cmp ffgcfc #define fits_read_colnull_dblcmp ffgcfm #define fits_read_descript ffgdes #define fits_read_descriptll ffgdesll #define fits_read_descripts ffgdess #define fits_read_descriptsll ffgdessll #define fits_read_tblbytes ffgtbb #define fits_write_grppar_byt ffpgpb #define fits_write_grppar_sbyt ffpgpsb #define fits_write_grppar_usht ffpgpui #define fits_write_grppar_ulng ffpgpuj #define fits_write_grppar_sht ffpgpi #define fits_write_grppar_lng ffpgpj #define fits_write_grppar_lnglng ffpgpjj #define fits_write_grppar_uint ffpgpuk #define fits_write_grppar_int ffpgpk #define fits_write_grppar_flt ffpgpe #define fits_write_grppar_dbl ffpgpd #define fits_write_pix ffppx #define fits_write_pixll ffppxll #define fits_write_pixnull ffppxn #define fits_write_pixnullll ffppxnll #define fits_write_img ffppr #define fits_write_img_byt ffpprb #define fits_write_img_sbyt ffpprsb #define fits_write_img_usht ffpprui #define fits_write_img_ulng ffppruj #define fits_write_img_sht ffppri #define fits_write_img_lng ffpprj #define fits_write_img_lnglng ffpprjj #define fits_write_img_uint ffppruk #define fits_write_img_int ffpprk #define fits_write_img_flt ffppre #define fits_write_img_dbl ffpprd #define fits_write_imgnull ffppn #define fits_write_imgnull_byt ffppnb #define fits_write_imgnull_sbyt ffppnsb #define fits_write_imgnull_usht ffppnui #define fits_write_imgnull_ulng ffppnuj #define fits_write_imgnull_sht ffppni #define fits_write_imgnull_lng ffppnj #define fits_write_imgnull_lnglng ffppnjj #define fits_write_imgnull_uint ffppnuk #define fits_write_imgnull_int ffppnk #define fits_write_imgnull_flt ffppne #define fits_write_imgnull_dbl ffppnd #define fits_write_img_null ffppru #define fits_write_null_img ffpprn #define fits_write_2d_byt ffp2db #define fits_write_2d_sbyt ffp2dsb #define fits_write_2d_usht ffp2dui #define fits_write_2d_ulng ffp2duj #define fits_write_2d_sht ffp2di #define fits_write_2d_lng ffp2dj #define fits_write_2d_lnglng ffp2djj #define fits_write_2d_uint ffp2duk #define fits_write_2d_int ffp2dk #define fits_write_2d_flt ffp2de #define fits_write_2d_dbl ffp2dd #define fits_write_3d_byt ffp3db #define fits_write_3d_sbyt ffp3dsb #define fits_write_3d_usht ffp3dui #define fits_write_3d_ulng ffp3duj #define fits_write_3d_sht ffp3di #define fits_write_3d_lng ffp3dj #define fits_write_3d_lnglng ffp3djj #define fits_write_3d_uint ffp3duk #define fits_write_3d_int ffp3dk #define fits_write_3d_flt ffp3de #define fits_write_3d_dbl ffp3dd #define fits_write_subset ffpss #define fits_write_subset_byt ffpssb #define fits_write_subset_sbyt ffpsssb #define fits_write_subset_usht ffpssui #define fits_write_subset_ulng ffpssuj #define fits_write_subset_sht ffpssi #define fits_write_subset_lng ffpssj #define fits_write_subset_lnglng ffpssjj #define fits_write_subset_uint ffpssuk #define fits_write_subset_int ffpssk #define fits_write_subset_flt ffpsse #define fits_write_subset_dbl ffpssd #define fits_write_col ffpcl #define fits_write_col_str ffpcls #define fits_write_col_log ffpcll #define fits_write_col_byt ffpclb #define fits_write_col_sbyt ffpclsb #define fits_write_col_usht ffpclui #define fits_write_col_ulng ffpcluj #define fits_write_col_sht ffpcli #define fits_write_col_lng ffpclj #define fits_write_col_lnglng ffpcljj #define fits_write_col_uint ffpcluk #define fits_write_col_int ffpclk #define fits_write_col_flt ffpcle #define fits_write_col_dbl ffpcld #define fits_write_col_cmp ffpclc #define fits_write_col_dblcmp ffpclm #define fits_write_col_null ffpclu #define fits_write_col_bit ffpclx #define fits_write_nulrows ffprwu #define fits_write_nullrows ffprwu #define fits_write_colnull ffpcn #define fits_write_colnull_str ffpcns #define fits_write_colnull_log ffpcnl #define fits_write_colnull_byt ffpcnb #define fits_write_colnull_sbyt ffpcnsb #define fits_write_colnull_usht ffpcnui #define fits_write_colnull_ulng ffpcnuj #define fits_write_colnull_sht ffpcni #define fits_write_colnull_lng ffpcnj #define fits_write_colnull_lnglng ffpcnjj #define fits_write_colnull_uint ffpcnuk #define fits_write_colnull_int ffpcnk #define fits_write_colnull_flt ffpcne #define fits_write_colnull_dbl ffpcnd #define fits_write_ext ffpextn #define fits_read_ext ffgextn #define fits_write_descript ffpdes #define fits_compress_heap ffcmph #define fits_test_heap fftheap #define fits_write_tblbytes ffptbb #define fits_insert_rows ffirow #define fits_delete_rows ffdrow #define fits_delete_rowrange ffdrrg #define fits_delete_rowlist ffdrws #define fits_delete_rowlistll ffdrwsll #define fits_insert_col fficol #define fits_insert_cols fficls #define fits_delete_col ffdcol #define fits_copy_col ffcpcl #define fits_copy_rows ffcprw #define fits_modify_vector_len ffmvec #define fits_read_img_coord ffgics #define fits_read_img_coord_version ffgicsa #define fits_read_tbl_coord ffgtcs #define fits_pix_to_world ffwldp #define fits_world_to_pix ffxypx #define fits_get_image_wcs_keys ffgiwcs #define fits_get_table_wcs_keys ffgtwcs #define fits_find_rows fffrow #define fits_find_first_row ffffrw #define fits_find_rows_cmp fffrwc #define fits_select_rows ffsrow #define fits_calc_rows ffcrow #define fits_calculator ffcalc #define fits_calculator_rng ffcalc_rng #define fits_test_expr fftexp #define fits_create_group ffgtcr #define fits_insert_group ffgtis #define fits_change_group ffgtch #define fits_remove_group ffgtrm #define fits_copy_group ffgtcp #define fits_merge_groups ffgtmg #define fits_compact_group ffgtcm #define fits_verify_group ffgtvf #define fits_open_group ffgtop #define fits_add_group_member ffgtam #define fits_get_num_members ffgtnm #define fits_get_num_groups ffgmng #define fits_open_member ffgmop #define fits_copy_member ffgmcp #define fits_transfer_member ffgmtf #define fits_remove_member ffgmrm #endif healpy-1.8.1/cfitsio/putcold.c0000654000175000017530000011206612272000775016701 0ustar zoncaplanck00000000000000/* This file, putcold.c, contains routines that write data elements to */ /* a FITS image or table, with double datatype. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffpprd( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to write(1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ double *array, /* I - array of values that are written */ int *status) /* IO - error status */ /* Write an array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long row; double nullvalue; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_write_compressed_pixels(fptr, TDOUBLE, firstelem, nelem, 0, array, &nullvalue, status); return(*status); } row=maxvalue(1,group); ffpcld(fptr, 2, row, firstelem, nelem, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffppnd( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to write(1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ double *array, /* I - array of values that are written */ double nulval, /* I - undefined pixel value */ int *status) /* IO - error status */ /* Write an array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). Any array values that are equal to the value of nulval will be replaced with the null pixel value that is appropriate for this column. */ { long row; double nullvalue; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ nullvalue = nulval; /* set local variable */ fits_write_compressed_pixels(fptr, TDOUBLE, firstelem, nelem, 1, array, &nullvalue, status); return(*status); } row=maxvalue(1,group); ffpcnd(fptr, 2, row, firstelem, nelem, array, nulval, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffp2dd(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ double *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write an entire 2-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { /* call the 3D writing routine, with the 3rd dimension = 1 */ ffp3dd(fptr, group, ncols, naxis2, naxis1, naxis2, 1, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffp3dd(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG nrows, /* I - number of rows in each plane of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ LONGLONG naxis3, /* I - FITS image NAXIS3 value */ double *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write an entire 3-D cube of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long tablerow, ii, jj; long fpixel[3]= {1,1,1}, lpixel[3]; LONGLONG nfits, narray; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ lpixel[0] = (long) ncols; lpixel[1] = (long) nrows; lpixel[2] = (long) naxis3; fits_write_compressed_img(fptr, TDOUBLE, fpixel, lpixel, 0, array, NULL, status); return(*status); } tablerow=maxvalue(1,group); if (ncols == naxis1 && nrows == naxis2) /* arrays have same size? */ { /* all the image pixels are contiguous, so write all at once */ ffpcld(fptr, 2, tablerow, 1L, naxis1 * naxis2 * naxis3, array, status); return(*status); } if (ncols < naxis1 || nrows < naxis2) return(*status = BAD_DIMEN); nfits = 1; /* next pixel in FITS image to write to */ narray = 0; /* next pixel in input array to be written */ /* loop over naxis3 planes in the data cube */ for (jj = 0; jj < naxis3; jj++) { /* loop over the naxis2 rows in the FITS image, */ /* writing naxis1 pixels to each row */ for (ii = 0; ii < naxis2; ii++) { if (ffpcld(fptr, 2, tablerow, nfits, naxis1,&array[narray],status) > 0) return(*status); nfits += naxis1; narray += ncols; } narray += (nrows - naxis2) * ncols; } return(*status); } /*--------------------------------------------------------------------------*/ int ffpssd(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ long naxis, /* I - number of data axes in array */ long *naxes, /* I - size of each FITS axis */ long *fpixel, /* I - 1st pixel in each axis to write (1=1st) */ long *lpixel, /* I - last pixel in each axis to write */ double *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write a subsection of pixels to the primary array or image. A subsection is defined to be any contiguous rectangular array of pixels within the n-dimensional FITS data file. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long tablerow; LONGLONG fpix[7], dimen[7], astart, pstart; LONGLONG off2, off3, off4, off5, off6, off7; LONGLONG st10, st20, st30, st40, st50, st60, st70; LONGLONG st1, st2, st3, st4, st5, st6, st7; long ii, i1, i2, i3, i4, i5, i6, i7, irange[7]; if (*status > 0) return(*status); if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_write_compressed_img(fptr, TDOUBLE, fpixel, lpixel, 0, array, NULL, status); return(*status); } if (naxis < 1 || naxis > 7) return(*status = BAD_DIMEN); tablerow=maxvalue(1,group); /* calculate the size and number of loops to perform in each dimension */ for (ii = 0; ii < 7; ii++) { fpix[ii]=1; irange[ii]=1; dimen[ii]=1; } for (ii = 0; ii < naxis; ii++) { fpix[ii]=fpixel[ii]; irange[ii]=lpixel[ii]-fpixel[ii]+1; dimen[ii]=naxes[ii]; } i1=irange[0]; /* compute the pixel offset between each dimension */ off2 = dimen[0]; off3 = off2 * dimen[1]; off4 = off3 * dimen[2]; off5 = off4 * dimen[3]; off6 = off5 * dimen[4]; off7 = off6 * dimen[5]; st10 = fpix[0]; st20 = (fpix[1] - 1) * off2; st30 = (fpix[2] - 1) * off3; st40 = (fpix[3] - 1) * off4; st50 = (fpix[4] - 1) * off5; st60 = (fpix[5] - 1) * off6; st70 = (fpix[6] - 1) * off7; /* store the initial offset in each dimension */ st1 = st10; st2 = st20; st3 = st30; st4 = st40; st5 = st50; st6 = st60; st7 = st70; astart = 0; for (i7 = 0; i7 < irange[6]; i7++) { for (i6 = 0; i6 < irange[5]; i6++) { for (i5 = 0; i5 < irange[4]; i5++) { for (i4 = 0; i4 < irange[3]; i4++) { for (i3 = 0; i3 < irange[2]; i3++) { pstart = st1 + st2 + st3 + st4 + st5 + st6 + st7; for (i2 = 0; i2 < irange[1]; i2++) { if (ffpcld(fptr, 2, tablerow, pstart, i1, &array[astart], status) > 0) return(*status); astart += i1; pstart += off2; } st2 = st20; st3 = st3+off3; } st3 = st30; st4 = st4+off4; } st4 = st40; st5 = st5+off5; } st5 = st50; st6 = st6+off6; } st6 = st60; st7 = st7+off7; } return(*status); } /*--------------------------------------------------------------------------*/ int ffpgpd( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ long firstelem, /* I - first vector element to write(1 = 1st) */ long nelem, /* I - number of values to write */ double *array, /* I - array of values that are written */ int *status) /* IO - error status */ /* Write an array of group parameters to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long row; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffpcld(fptr, 1L, row, firstelem, nelem, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffpcld( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ double *array, /* I - array of values to write */ int *status) /* IO - error status */ /* Write an array of values to a column in the current FITS HDU. The column number may refer to a real column in an ASCII or binary table, or it may refer to a virtual column in a 1 or more grouped FITS primary array. FITSIO treats a primary array as a binary table with 2 vector columns: the first column contains the group parameters (often with length = 0) and the second column contains the array of image pixels. Each row of the table represents a group in the case of multigroup FITS images. The input array of values will be converted to the datatype of the column and will be inverse-scaled by the FITS TSCALn and TZEROn values if necessary. */ { int tcode, maxelem2, hdutype, writeraw; long twidth, incre; long ntodo; LONGLONG repeat, startpos, elemnum, wrtptr, rowlen, rownum, remain, next, tnull, maxelem; double scale, zero; char tform[20], cform[20]; char message[FLEN_ERRMSG]; char snull[20]; /* the FITS null value */ double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */ void *buffer; if (*status > 0) /* inherit input status value if > 0 */ return(*status); buffer = cbuff; /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if (ffgcprll( fptr, colnum, firstrow, firstelem, nelem, 1, &scale, &zero, tform, &twidth, &tcode, &maxelem2, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0) return(*status); maxelem = maxelem2; if (tcode == TSTRING) ffcfmt(tform, cform); /* derive C format for writing strings */ /* if there is no scaling and the native machine format is not byteswapped, then we can simply write the raw data bytes into the FITS file if the datatype of the FITS column is the same as the input values. Otherwise, we must convert the raw values into the scaled and/or machine dependent format in a temporary buffer that has been allocated for this purpose. */ if (scale == 1. && zero == 0. && MACHINE == NATIVE && tcode == TDOUBLE) { writeraw = 1; if (nelem < (LONGLONG)INT32_MAX) { maxelem = nelem; } else { maxelem = INT32_MAX/8; } } else writeraw = 0; /*---------------------------------------------------------------------*/ /* Now write the pixels to the FITS column. */ /* First call the ffXXfYY routine to (1) convert the datatype */ /* if necessary, and (2) scale the values by the FITS TSCALn and */ /* TZEROn linear scaling parameters into a temporary buffer. */ /*---------------------------------------------------------------------*/ remain = nelem; /* remaining number of values to write */ next = 0; /* next element in array to be written */ rownum = 0; /* row number, relative to firstrow */ while (remain) { /* limit the number of pixels to process a one time to the number that will fit in the buffer space or to the number of pixels that remain in the current vector, which ever is smaller. */ ntodo = (long) minvalue(remain, maxelem); ntodo = (long) minvalue(ntodo, (repeat - elemnum)); wrtptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * incre); ffmbyt(fptr, wrtptr, IGNORE_EOF, status); /* move to write position */ switch (tcode) { case (TDOUBLE): if (writeraw) { /* write raw input bytes without conversion */ ffpr8b(fptr, ntodo, incre, &array[next], status); } else { /* convert the raw data before writing to FITS file */ ffr8fr8(&array[next], ntodo, scale, zero, (double *) buffer, status); ffpr8b(fptr, ntodo, incre, (double *) buffer, status); } break; case (TLONGLONG): ffr8fi8(&array[next], ntodo, scale, zero, (LONGLONG *) buffer, status); ffpi8b(fptr, ntodo, incre, (long *) buffer, status); break; case (TBYTE): ffr8fi1(&array[next], ntodo, scale, zero, (unsigned char *) buffer, status); ffpi1b(fptr, ntodo, incre, (unsigned char *) buffer, status); break; case (TSHORT): ffr8fi2(&array[next], ntodo, scale, zero, (short *) buffer, status); ffpi2b(fptr, ntodo, incre, (short *) buffer, status); break; case (TLONG): ffr8fi4(&array[next], ntodo, scale, zero, (INT32BIT *) buffer, status); ffpi4b(fptr, ntodo, incre, (INT32BIT *) buffer, status); break; case (TFLOAT): ffr8fr4(&array[next], ntodo, scale, zero, (float *) buffer, status); ffpr4b(fptr, ntodo, incre, (float *) buffer, status); break; case (TSTRING): /* numerical column in an ASCII table */ if (cform[1] != 's') /* "%s" format is a string */ { ffr8fstr(&array[next], ntodo, scale, zero, cform, twidth, (char *) buffer, status); if (incre == twidth) /* contiguous bytes */ ffpbyt(fptr, ntodo * twidth, buffer, status); else ffpbytoff(fptr, twidth, ntodo, incre - twidth, buffer, status); break; } /* can't write to string column, so fall thru to default: */ default: /* error trap */ sprintf(message, "Cannot write numbers to column %d which has format %s", colnum,tform); ffpmsg(message); if (hdutype == ASCII_TBL) return(*status = BAD_ATABLE_FORMAT); else return(*status = BAD_BTABLE_FORMAT); } /* End of switch block */ /*-------------------------*/ /* Check for fatal error */ /*-------------------------*/ if (*status > 0) /* test for error during previous write operation */ { sprintf(message, "Error writing elements %.0f thru %.0f of input data array (ffpcld).", (double) (next+1), (double) (next+ntodo)); ffpmsg(message); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain -= ntodo; if (remain) { next += ntodo; elemnum += ntodo; if (elemnum == repeat) /* completed a row; start on next row */ { elemnum = 0; rownum++; } } } /* End of main while Loop */ /*--------------------------------*/ /* check for numerical overflow */ /*--------------------------------*/ if (*status == OVERFLOW_ERR) { ffpmsg( "Numerical overflow during type conversion while writing FITS data."); *status = NUM_OVERFLOW; } return(*status); } /*--------------------------------------------------------------------------*/ int ffpclm( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ double *array, /* I - array of values to write */ int *status) /* IO - error status */ /* Write an array of double complex values to a column in the current FITS HDU. Each complex number if interpreted as a pair of float values. The column number may refer to a real column in an ASCII or binary table, or it may refer to a virtual column in a 1 or more grouped FITS primary array. FITSIO treats a primary array as a binary table with 2 vector columns: the first column contains the group parameters (often with length = 0) and the second column contains the array of image pixels. Each row of the table represents a group in the case of multigroup FITS images. The input array of values will be converted to the datatype of the column if necessary, but normally complex values should only be written to a binary table with TFORMn = 'rM' where r is an optional repeat count. The TSCALn and TZERO keywords should not be used with complex numbers because mathmatically the scaling should only be applied to the real (first) component of the complex value. */ { /* simply multiply the number of elements by 2, and call ffpcld */ ffpcld(fptr, colnum, firstrow, (firstelem - 1) * 2 + 1, nelem * 2, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffpcnd( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ double *array, /* I - array of values to write */ double nulvalue, /* I - value used to flag undefined pixels */ int *status) /* IO - error status */ /* Write an array of elements to the specified column of a table. Any input pixels equal to the value of nulvalue will be replaced by the appropriate null value in the output FITS file. The input array of values will be converted to the datatype of the column and will be inverse-scaled by the FITS TSCALn and TZEROn values if necessary */ { tcolumn *colptr; LONGLONG ngood = 0, nbad = 0, ii; LONGLONG repeat, first, fstelm, fstrow; int tcode, overflow = 0; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) { if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); } colptr = (fptr->Fptr)->tableptr; /* point to first column */ colptr += (colnum - 1); /* offset to correct column structure */ tcode = colptr->tdatatype; if (tcode > 0) repeat = colptr->trepeat; /* repeat count for this column */ else repeat = firstelem -1 + nelem; /* variable length arrays */ if (abs(tcode) >= TCOMPLEX) { /* treat complex columns as pairs of numbers */ repeat *= 2; } /* if variable length array, first write the whole input vector, then go back and fill in the nulls */ if (tcode < 0) { if (ffpcld(fptr, colnum, firstrow, firstelem, nelem, array, status) > 0) { if (*status == NUM_OVERFLOW) { /* ignore overflows, which are possibly the null pixel values */ /* overflow = 1; */ *status = 0; } else { return(*status); } } } /* absolute element number in the column */ first = (firstrow - 1) * repeat + firstelem; for (ii = 0; ii < nelem; ii++) { if (array[ii] != nulvalue) /* is this a good pixel? */ { if (nbad) /* write previous string of bad pixels */ { fstelm = ii - nbad + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ /* call ffpcluc, not ffpclu, in case we are writing to a complex ('C') binary table column */ if (ffpcluc(fptr, colnum, fstrow, fstelm, nbad, status) > 0) return(*status); nbad=0; } ngood = ngood +1; /* the consecutive number of good pixels */ } else { if (ngood) /* write previous string of good pixels */ { fstelm = ii - ngood + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (tcode > 0) { /* variable length arrays have already been written */ if (ffpcld(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status) > 0) { if (*status == NUM_OVERFLOW) { overflow = 1; *status = 0; } else { return(*status); } } } ngood=0; } nbad = nbad +1; /* the consecutive number of bad pixels */ } } /* finished loop; now just write the last set of pixels */ if (ngood) /* write last string of good pixels */ { fstelm = ii - ngood + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (tcode > 0) { /* variable length arrays have already been written */ ffpcld(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status); } } else if (nbad) /* write last string of bad pixels */ { fstelm = ii - nbad + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ ffpcluc(fptr, colnum, fstrow, fstelm, nbad, status); } if (*status <= 0) { if (overflow) { *status = NUM_OVERFLOW; } } return(*status); } /*--------------------------------------------------------------------------*/ int ffr8fi1(double *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ unsigned char *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) input[ii]; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) (dvalue + .5); } } return(*status); } /*--------------------------------------------------------------------------*/ int ffr8fi2(double *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ short *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (input[ii] > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) input[ii]; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else { if (dvalue >= 0) output[ii] = (short) (dvalue + .5); else output[ii] = (short) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffr8fi4(double *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ INT32BIT *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT32_MIN; } else if (input[ii] > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT32_MAX; } else output[ii] = (INT32BIT) input[ii]; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT32_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT32_MAX; } else { if (dvalue >= 0) output[ii] = (INT32BIT) (dvalue + .5); else output[ii] = (INT32BIT) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffr8fi8(double *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ LONGLONG *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (input[ii] > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else output[ii] = (LONGLONG) input[ii]; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (dvalue > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else { if (dvalue >= 0) output[ii] = (LONGLONG) (dvalue + .5); else output[ii] = (LONGLONG) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffr8fr4(double *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ float *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = (float) input[ii]; } else { for (ii = 0; ii < ntodo; ii++) output[ii] = (float) ((input[ii] - zero) / scale); } return(*status); } /*--------------------------------------------------------------------------*/ int ffr8fr8(double *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ double *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; if (scale == 1. && zero == 0.) { memcpy(output, input, ntodo * sizeof(double) ); /* copy input to output */ } else { for (ii = 0; ii < ntodo; ii++) output[ii] = (input[ii] - zero) / scale; } return(*status); } /*--------------------------------------------------------------------------*/ int ffr8fstr(double *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ char *cform, /* I - format for output string values */ long twidth, /* I - width of each field, in chars */ char *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do scaling if required. */ { long ii; double dvalue; char *cptr; cptr = output; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { sprintf(output, cform, input[ii]); output += twidth; if (*output) /* if this char != \0, then overflow occurred */ *status = OVERFLOW_ERR; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; sprintf(output, cform, dvalue); output += twidth; if (*output) /* if this char != \0, then overflow occurred */ *status = OVERFLOW_ERR; } } /* replace any commas with periods (e.g., in French locale) */ while ((cptr = strchr(cptr, ','))) *cptr = '.'; return(*status); } healpy-1.8.1/cfitsio/region.h0000654000175000017530000000415512272000775016516 0ustar zoncaplanck00000000000000/***************************************************************/ /* REGION STUFF */ /***************************************************************/ #include "fitsio.h" #define myPI 3.1415926535897932385 #define RadToDeg 180.0/myPI typedef struct { int exists; double xrefval, yrefval; double xrefpix, yrefpix; double xinc, yinc; double rot; char type[6]; } WCSdata; typedef enum { point_rgn, line_rgn, circle_rgn, annulus_rgn, ellipse_rgn, elliptannulus_rgn, box_rgn, boxannulus_rgn, rectangle_rgn, diamond_rgn, sector_rgn, poly_rgn, panda_rgn, epanda_rgn, bpanda_rgn } shapeType; typedef enum { pixel_fmt, degree_fmt, hhmmss_fmt } coordFmt; typedef struct { char sign; /* Include or exclude? */ shapeType shape; /* Shape of this region */ int comp; /* Component number for this region */ double xmin,xmax; /* bounding box */ double ymin,ymax; union { /* Parameters - In pixels */ /**** Generic Shape Data ****/ struct { double p[11]; /* Region parameters */ double sinT, cosT; /* For rotated shapes */ double a, b; /* Extra scratch area */ } gen; /**** Polygon Data ****/ struct { int nPts; /* Number of Polygon pts */ double *Pts; /* Polygon points */ } poly; } param; } RgnShape; typedef struct { int nShapes; RgnShape *Shapes; WCSdata wcs; } SAORegion; /* SAO region file routines */ int fits_read_rgnfile( const char *filename, WCSdata *wcs, SAORegion **Rgn, int *status ); int fits_in_region( double X, double Y, SAORegion *Rgn ); void fits_free_region( SAORegion *Rgn ); void fits_set_region_components ( SAORegion *Rgn ); void fits_setup_shape ( RgnShape *shape); int fits_read_fits_region ( fitsfile *fptr, WCSdata * wcs, SAORegion **Rgn, int *status); int fits_read_ascii_region ( const char *filename, WCSdata * wcs, SAORegion **Rgn, int *status); healpy-1.8.1/cfitsio/README.MacOS0000654000175000017530000000414012272000775016675 0ustar zoncaplanck00000000000000To build CFITSIO library on an Intel Mac as a Universal Binary Unzip the library: - tar xzf cfitsio3060.tar.gz (or whatever version this is) - cd cfitsio/ - copy the cfitsio-xcodeproj.zip file here - unzip cfitsio-xcodeproj.zip - start Xcode and open cfitsio.xcodeproj - expand the "Targets" menu under "Groups & Files" - choose one of the following build options: * right-click on Build PPC -> Build "Build PPC" * right-click on Build i386 -> Build "Build i386" * right-click on Build x86_64 -> Build "Build x86_64" * right-click on Build Universal -> Build "Build Universal" (Builds all three of the above options, i.e. a Universal Binary usable on ppc, i386, and x86_64 architectures) (For some reason clicking on the menu "Build" icon doesn't seem to work correctly, but the right-click menus do). ------------------------------------------------------- Another way to build the universal binary: - unpack the cfitsio source code tar file - cd cfitsio Set the CFLAGS environment variable for building a Universal Binary: C-Shell variants: setenv CFLAGS "-arch ppc -arch i386 -arch x86_64 -g -O2" Bourne Shell variants: export CFLAGS="-arch ppc -arch i386 -arch x86_64 -g -O2" Then proceed with the standard cfitsio build, i.e.: - ./configure - make - make install ------------------------------------------------------- Below, are the old (and now obsolete) instructions for building CFITSIO on classic Mac OS-9 or earlier versions: 1. Un binhex and unstuff cfitsio_mac.sit.hqx 2. put CFitsioPPC.mcp in the cfitsio directory. 2. Load CFitsioPPC.mcp into CodeWarrior Pro 5 and make. This builds the cfitsio library for PPC. There are also targets for both the test program and the speed test program. To use the MacOS port you can add Cfitsio PPC.lib to your Codewarrior Pro 5 project. Note that this only has been tested for the PPC. It probably won't work on 68k macs. Also note that the fortran bindings aren't included. I haven't worked with the codewarrior f2c plugin so I don't know how these would work. 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Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffpprui(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write (1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ unsigned short *array, /* I - array of values that are written */ int *status) /* IO - error status */ /* Write an array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long row; unsigned short nullvalue; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_write_compressed_pixels(fptr, TUSHORT, firstelem, nelem, 0, array, &nullvalue, status); return(*status); } row=maxvalue(1,group); ffpclui(fptr, 2, row, firstelem, nelem, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffppnui(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to write(1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ unsigned short *array, /* I - array of values that are written */ unsigned short nulval, /* I - undefined pixel value */ int *status) /* IO - error status */ /* Write an array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). Any array values that are equal to the value of nulval will be replaced with the null pixel value that is appropriate for this column. */ { long row; unsigned short nullvalue; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ nullvalue = nulval; /* set local variable */ fits_write_compressed_pixels(fptr, TUSHORT, firstelem, nelem, 1, array, &nullvalue, status); return(*status); } row=maxvalue(1,group); ffpcnui(fptr, 2, row, firstelem, nelem, array, nulval, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffp2dui(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ unsigned short *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write an entire 2-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { /* call the 3D writing routine, with the 3rd dimension = 1 */ ffp3dui(fptr, group, ncols, naxis2, naxis1, naxis2, 1, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffp3dui(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG nrows, /* I - number of rows in each plane of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ LONGLONG naxis3, /* I - FITS image NAXIS3 value */ unsigned short *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write an entire 3-D cube of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long tablerow, ii, jj; long fpixel[3]= {1,1,1}, lpixel[3]; LONGLONG nfits, narray; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ lpixel[0] = (long) ncols; lpixel[1] = (long) nrows; lpixel[2] = (long) naxis3; fits_write_compressed_img(fptr, TUSHORT, fpixel, lpixel, 0, array, NULL, status); return(*status); } tablerow=maxvalue(1,group); if (ncols == naxis1 && nrows == naxis2) /* arrays have same size? */ { /* all the image pixels are contiguous, so write all at once */ ffpclui(fptr, 2, tablerow, 1L, naxis1 * naxis2 * naxis3, array, status); return(*status); } if (ncols < naxis1 || nrows < naxis2) return(*status = BAD_DIMEN); nfits = 1; /* next pixel in FITS image to write to */ narray = 0; /* next pixel in input array to be written */ /* loop over naxis3 planes in the data cube */ for (jj = 0; jj < naxis3; jj++) { /* loop over the naxis2 rows in the FITS image, */ /* writing naxis1 pixels to each row */ for (ii = 0; ii < naxis2; ii++) { if (ffpclui(fptr, 2, tablerow, nfits, naxis1,&array[narray],status) > 0) return(*status); nfits += naxis1; narray += ncols; } narray += (nrows - naxis2) * ncols; } return(*status); } /*--------------------------------------------------------------------------*/ int ffpssui(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ long naxis, /* I - number of data axes in array */ long *naxes, /* I - size of each FITS axis */ long *fpixel, /* I - 1st pixel in each axis to write (1=1st) */ long *lpixel, /* I - last pixel in each axis to write */ unsigned short *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write a subsection of pixels to the primary array or image. A subsection is defined to be any contiguous rectangular array of pixels within the n-dimensional FITS data file. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long tablerow; LONGLONG fpix[7], dimen[7], astart, pstart; LONGLONG off2, off3, off4, off5, off6, off7; LONGLONG st10, st20, st30, st40, st50, st60, st70; LONGLONG st1, st2, st3, st4, st5, st6, st7; long ii, i1, i2, i3, i4, i5, i6, i7, irange[7]; if (*status > 0) return(*status); if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_write_compressed_img(fptr, TUSHORT, fpixel, lpixel, 0, array, NULL, status); return(*status); } if (naxis < 1 || naxis > 7) return(*status = BAD_DIMEN); tablerow=maxvalue(1,group); /* calculate the size and number of loops to perform in each dimension */ for (ii = 0; ii < 7; ii++) { fpix[ii]=1; irange[ii]=1; dimen[ii]=1; } for (ii = 0; ii < naxis; ii++) { fpix[ii]=fpixel[ii]; irange[ii]=lpixel[ii]-fpixel[ii]+1; dimen[ii]=naxes[ii]; } i1=irange[0]; /* compute the pixel offset between each dimension */ off2 = dimen[0]; off3 = off2 * dimen[1]; off4 = off3 * dimen[2]; off5 = off4 * dimen[3]; off6 = off5 * dimen[4]; off7 = off6 * dimen[5]; st10 = fpix[0]; st20 = (fpix[1] - 1) * off2; st30 = (fpix[2] - 1) * off3; st40 = (fpix[3] - 1) * off4; st50 = (fpix[4] - 1) * off5; st60 = (fpix[5] - 1) * off6; st70 = (fpix[6] - 1) * off7; /* store the initial offset in each dimension */ st1 = st10; st2 = st20; st3 = st30; st4 = st40; st5 = st50; st6 = st60; st7 = st70; astart = 0; for (i7 = 0; i7 < irange[6]; i7++) { for (i6 = 0; i6 < irange[5]; i6++) { for (i5 = 0; i5 < irange[4]; i5++) { for (i4 = 0; i4 < irange[3]; i4++) { for (i3 = 0; i3 < irange[2]; i3++) { pstart = st1 + st2 + st3 + st4 + st5 + st6 + st7; for (i2 = 0; i2 < irange[1]; i2++) { if (ffpclui(fptr, 2, tablerow, pstart, i1, &array[astart], status) > 0) return(*status); astart += i1; pstart += off2; } st2 = st20; st3 = st3+off3; } st3 = st30; st4 = st4+off4; } st4 = st40; st5 = st5+off5; } st5 = st50; st6 = st6+off6; } st6 = st60; st7 = st7+off7; } return(*status); } /*--------------------------------------------------------------------------*/ int ffpgpui( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ long firstelem, /* I - first vector element to write(1 = 1st) */ long nelem, /* I - number of values to write */ unsigned short *array, /* I - array of values that are written */ int *status) /* IO - error status */ /* Write an array of group parameters to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long row; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffpclui(fptr, 1L, row, firstelem, nelem, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffpclui( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ unsigned short *array, /* I - array of values to write */ int *status) /* IO - error status */ /* Write an array of values to a column in the current FITS HDU. The column number may refer to a real column in an ASCII or binary table, or it may refer to a virtual column in a 1 or more grouped FITS primary array. FITSIO treats a primary array as a binary table with 2 vector columns: the first column contains the group parameters (often with length = 0) and the second column contains the array of image pixels. Each row of the table represents a group in the case of multigroup FITS images. The input array of values will be converted to the datatype of the column and will be inverse-scaled by the FITS TSCALn and TZEROn values if necessary. */ { int tcode, maxelem, hdutype; long twidth, incre; long ntodo; LONGLONG repeat, startpos, elemnum, wrtptr, rowlen, rownum, remain, next, tnull; double scale, zero; char tform[20], cform[20]; char message[FLEN_ERRMSG]; char snull[20]; /* the FITS null value */ double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */ void *buffer; if (*status > 0) /* inherit input status value if > 0 */ return(*status); buffer = cbuff; /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if (ffgcprll( fptr, colnum, firstrow, firstelem, nelem, 1, &scale, &zero, tform, &twidth, &tcode, &maxelem, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0) return(*status); if (tcode == TSTRING) ffcfmt(tform, cform); /* derive C format for writing strings */ /*---------------------------------------------------------------------*/ /* Now write the pixels to the FITS column. */ /* First call the ffXXfYY routine to (1) convert the datatype */ /* if necessary, and (2) scale the values by the FITS TSCALn and */ /* TZEROn linear scaling parameters into a temporary buffer. */ /*---------------------------------------------------------------------*/ remain = nelem; /* remaining number of values to write */ next = 0; /* next element in array to be written */ rownum = 0; /* row number, relative to firstrow */ while (remain) { /* limit the number of pixels to process a one time to the number that will fit in the buffer space or to the number of pixels that remain in the current vector, which ever is smaller. */ ntodo = (long) minvalue(remain, maxelem); ntodo = (long) minvalue(ntodo, (repeat - elemnum)); wrtptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * incre); ffmbyt(fptr, wrtptr, IGNORE_EOF, status); /* move to write position */ switch (tcode) { case (TSHORT): ffu2fi2(&array[next], ntodo, scale, zero, (short *) buffer, status); ffpi2b(fptr, ntodo, incre, (short *) buffer, status); break; case (TLONGLONG): ffu2fi8(&array[next], ntodo, scale, zero, (LONGLONG *) buffer, status); ffpi8b(fptr, ntodo, incre, (long *) buffer, status); break; case (TBYTE): ffu2fi1(&array[next], ntodo, scale, zero, (unsigned char *) buffer, status); ffpi1b(fptr, ntodo, incre, (unsigned char *) buffer, status); break; case (TLONG): ffu2fi4(&array[next], ntodo, scale, zero, (INT32BIT *) buffer, status); ffpi4b(fptr, ntodo, incre, (INT32BIT *) buffer, status); break; case (TFLOAT): ffu2fr4(&array[next], ntodo, scale, zero, (float *) buffer, status); ffpr4b(fptr, ntodo, incre, (float *) buffer, status); break; case (TDOUBLE): ffu2fr8(&array[next], ntodo, scale, zero, (double *) buffer, status); ffpr8b(fptr, ntodo, incre, (double *) buffer, status); break; case (TSTRING): /* numerical column in an ASCII table */ if (cform[1] != 's') /* "%s" format is a string */ { ffu2fstr(&array[next], ntodo, scale, zero, cform, twidth, (char *) buffer, status); if (incre == twidth) /* contiguous bytes */ ffpbyt(fptr, ntodo * twidth, buffer, status); else ffpbytoff(fptr, twidth, ntodo, incre - twidth, buffer, status); break; } /* can't write to string column, so fall thru to default: */ default: /* error trap */ sprintf(message, "Cannot write numbers to column %d which has format %s", colnum,tform); ffpmsg(message); if (hdutype == ASCII_TBL) return(*status = BAD_ATABLE_FORMAT); else return(*status = BAD_BTABLE_FORMAT); } /* End of switch block */ /*-------------------------*/ /* Check for fatal error */ /*-------------------------*/ if (*status > 0) /* test for error during previous write operation */ { sprintf(message, "Error writing elements %.0f thru %.0f of input data array (ffpclui).", (double) (next+1), (double) (next+ntodo)); ffpmsg(message); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain -= ntodo; if (remain) { next += ntodo; elemnum += ntodo; if (elemnum == repeat) /* completed a row; start on next row */ { elemnum = 0; rownum++; } } } /* End of main while Loop */ /*--------------------------------*/ /* check for numerical overflow */ /*--------------------------------*/ if (*status == OVERFLOW_ERR) { ffpmsg( "Numerical overflow during type conversion while writing FITS data."); *status = NUM_OVERFLOW; } return(*status); } /*--------------------------------------------------------------------------*/ int ffpcnui(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ unsigned short *array, /* I - array of values to write */ unsigned short nulvalue, /* I - value used to flag undefined pixels */ int *status) /* IO - error status */ /* Write an array of elements to the specified column of a table. Any input pixels equal to the value of nulvalue will be replaced by the appropriate null value in the output FITS file. The input array of values will be converted to the datatype of the column and will be inverse-scaled by the FITS TSCALn and TZEROn values if necessary */ { tcolumn *colptr; LONGLONG ngood = 0, nbad = 0, ii; LONGLONG repeat, first, fstelm, fstrow; int tcode, overflow = 0; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) { if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); } colptr = (fptr->Fptr)->tableptr; /* point to first column */ colptr += (colnum - 1); /* offset to correct column structure */ tcode = colptr->tdatatype; if (tcode > 0) repeat = colptr->trepeat; /* repeat count for this column */ else repeat = firstelem -1 + nelem; /* variable length arrays */ /* if variable length array, first write the whole input vector, then go back and fill in the nulls */ if (tcode < 0) { if (ffpclui(fptr, colnum, firstrow, firstelem, nelem, array, status) > 0) { if (*status == NUM_OVERFLOW) { /* ignore overflows, which are possibly the null pixel values */ /* overflow = 1; */ *status = 0; } else { return(*status); } } } /* absolute element number in the column */ first = (firstrow - 1) * repeat + firstelem; for (ii = 0; ii < nelem; ii++) { if (array[ii] != nulvalue) /* is this a good pixel? */ { if (nbad) /* write previous string of bad pixels */ { fstelm = ii - nbad + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (ffpclu(fptr, colnum, fstrow, fstelm, nbad, status) > 0) return(*status); nbad=0; } ngood = ngood +1; /* the consecutive number of good pixels */ } else { if (ngood) /* write previous string of good pixels */ { fstelm = ii - ngood + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (tcode > 0) { /* variable length arrays have already been written */ if (ffpclui(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status) > 0) { if (*status == NUM_OVERFLOW) { overflow = 1; *status = 0; } else { return(*status); } } } ngood=0; } nbad = nbad +1; /* the consecutive number of bad pixels */ } } /* finished loop; now just write the last set of pixels */ if (ngood) /* write last string of good pixels */ { fstelm = ii - ngood + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (tcode > 0) { /* variable length arrays have already been written */ ffpclui(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status); } } else if (nbad) /* write last string of bad pixels */ { fstelm = ii - nbad + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ ffpclu(fptr, colnum, fstrow, fstelm, nbad, status); } if (*status <= 0) { if (overflow) { *status = NUM_OVERFLOW; } } return(*status); } /*--------------------------------------------------------------------------*/ int ffu2fi1(unsigned short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ unsigned char *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { if (input[ii] > UCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) input[ii]; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = ((double) input[ii] - zero) / scale; if (dvalue < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) (dvalue + .5); } } return(*status); } /*--------------------------------------------------------------------------*/ int ffu2fi2(unsigned short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ short *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required */ { long ii; double dvalue; if (scale == 1. && zero == 32768.) { /* Instead of subtracting 32768, it is more efficient */ /* to just flip the sign bit with the XOR operator */ for (ii = 0; ii < ntodo; ii++) output[ii] = ( *(short *) &input[ii] ) ^ 0x8000; } else if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { if (input[ii] > SHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = input[ii]; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = ((double) input[ii] - zero) / scale; if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else { if (dvalue >= 0) output[ii] = (short) (dvalue + .5); else output[ii] = (short) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffu2fi4(unsigned short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ INT32BIT *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = (INT32BIT) input[ii]; /* copy input to output */ } else { for (ii = 0; ii < ntodo; ii++) { dvalue = ((double) input[ii] - zero) / scale; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT32_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT32_MAX; } else { if (dvalue >= 0) output[ii] = (INT32BIT) (dvalue + .5); else output[ii] = (INT32BIT) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffu2fi8(unsigned short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ LONGLONG *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = input[ii]; } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (dvalue > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else { if (dvalue >= 0) output[ii] = (LONGLONG) (dvalue + .5); else output[ii] = (LONGLONG) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffu2fr4(unsigned short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ float *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = (float) input[ii]; } else { for (ii = 0; ii < ntodo; ii++) output[ii] = (float) (((double) input[ii] - zero) / scale); } return(*status); } /*--------------------------------------------------------------------------*/ int ffu2fr8(unsigned short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ double *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = (double) input[ii]; } else { for (ii = 0; ii < ntodo; ii++) output[ii] = ((double) input[ii] - zero) / scale; } return(*status); } /*--------------------------------------------------------------------------*/ int ffu2fstr(unsigned short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ char *cform, /* I - format for output string values */ long twidth, /* I - width of each field, in chars */ char *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do scaling if required. */ { long ii; double dvalue; char *cptr; cptr = output; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { sprintf(output, cform, (double) input[ii]); output += twidth; if (*output) /* if this char != \0, then overflow occurred */ *status = OVERFLOW_ERR; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = ((double) input[ii] - zero) / scale; sprintf(output, cform, dvalue); output += twidth; if (*output) /* if this char != \0, then overflow occurred */ *status = OVERFLOW_ERR; } } /* replace any commas with periods (e.g., in French locale) */ while ((cptr = strchr(cptr, ','))) *cptr = '.'; return(*status); } healpy-1.8.1/cfitsio/testf77.out0000654000175000017530000010122312272000775017110 0ustar zoncaplanck00000000000000 FITSIO TESTPROG Try opening then closing a nonexistent file: ftopen iunit, status (expect an error) = 15 104 ftclos status = 104 ftinit create new file status = 0 test writing of long string keywords: 123456789012345678901234567890123456789012345678901234567890123456789012345 '12345678901234567890123456789012345678901234567890123456789012345678' 1234567890123456789012345678901234567890123456789012345678901234'6789012345 '1234567890123456789012345678901234567890123456789012345678901234''67' 1234567890123456789012345678901234567890123456789012345678901234''789012345 '1234567890123456789012345678901234567890123456789012345678901234''''' 1234567890123456789012345678901234567890123456789012345678901234567'9012345 '1234567890123456789012345678901234567890123456789012345678901234567' Wrote all Keywords successfully ftflus status = 0 HDU number = 1 Values read back from primary array (99 = null pixel) The 1st, and every 4th pixel should be undefined: 99 2 3 99 5 6 7 99 9 10 11 99 13 14 15 99 17 18 19 99 T (ftgpvb) 99 2 3 99 5 6 7 99 9 10 11 99 13 14 15 99 17 18 19 99 T (ftgpvi) 99 2 3 99 5 6 7 99 9 10 11 99 13 14 15 99 17 18 19 99 T (ftgpvj) 99. 2. 3.99. 5. 6. 7.99. 9.10.11.99.13.14.15.99.17.18.19.99. T (ftgpve) 99. 2. 3.99. 5. 6. 7.99. 9.10.11.99.13.14.15.99.17.18.19.99. T (ftgpvd) 0 2 3 0 5 6 7 0 9 10 11 0 13 14 15 0 17 18 19 0 T (ftgpfb) 0 2 3 0 5 6 7 0 9 10 11 0 13 14 15 0 17 18 19 0 T (ftgpfi) 0 2 3 0 5 6 7 0 9 10 11 0 13 14 15 0 17 18 19 0 T (ftgpfj) 0. 2. 3. 0. 5. 6. 7. 0. 9.10.11. 0.13.14.15. 0.17.18.19. 0. T (ftgpfe) 0. 2. 3. 0. 5. 6. 7. 0. 9.10.11. 0.13.14.15. 0.17.18.19. 0. T (ftgpfd) Closed then reopened the FITS file 10 times. HDU number = 1 Read back keywords: simple, bitpix, naxis, naxes = T 32 2 10 2 pcount, gcount, extend = 0 1 T KEY_PREC= 'This keyword was written by fxprec' / comment goes here KEY_PREC 'This keyword was written by fxprec comment goes here KEY_PREC= 'This keyword was written by fxprec' / comment goes here KY_PKNS1 :'first string' :fxpkns comment KEY_PKYS :value_string :fxpkys comment 0 KEY_PKYL : T:fxpkyl comment 0 KEY_PKYJ : 11:fxpkyj comment 0 KEY_PKYE : 11.00000:fxpkyj comment 0 KEY_PKYD : 11.00000:fxpkyj comment 0 KEY_PKYS :value_string :fxpkys comment 0 KEY_PKYL : T:fxpkyl comment 0 KEY_PKYJ : 11:fxpkyj comment 0 KEY_PKYE : 13.13131:fxpkye comment 0 KEY_PKYD : 15.15152:fxpkyd comment 0 KEY_PKYF : 12.12121:fxpkyf comment 0 KEY_PKYE : 13.13131:fxpkye comment 0 KEY_PKYG : 14.141414141414:fxpkyg comment 0 KEY_PKYD : 15.151515151515:fxpkyd comment 0 KEY_PKYT : 12345678:0.12345678901235fxpkyt comment 0 KEY_PKYJ : 11:[km/s/Mpc] fxpkyj comment 0 keyword unit=km/s/Mpc KEY_PKYJ : 11:fxpkyj comment 0 keyword unit= KEY_PKYJ : 11:[feet/second/second] fxpkyj comment 0 keyword unit=feet/second/second KEY_PKLS long string value = This is a very long string value that is continued over more than one keyword. header contains 61 keywords; located at keyword 23 ftgkns: first string second string ftgknl: T F T ftgknj: 11 12 13 ftgkne: 13.13131 14.14141 15.15152 ftgknd: 15.15152 16.16162 17.17172 Before deleting the HISTORY and DATE keywords... COMMENT HISTORY DATE KY_PKNS1 After deleting the keywords... COMMENT This keyword was written by fxpcom. KY_PKNS1= 'first string' / fxpkns comment After inserting the keywords... COMMENT continued over multiple keywords. The HEASARC convention uses the & KY_IREC = 'This keyword inserted by fxirec' KY_IKYS = 'insert_value_string' / ikys comment KY_IKYJ = 49 / ikyj comment KY_IKYL = T / ikyl comment KY_IKYE = 1.2346E+01 / ikye comment KY_IKYD = 1.23456789012346E+01 / ikyd comment KY_IKYF = 12.3456 / ikyf comment KY_IKYG = 12.3456789012346 / ikyg comment COMMENT character at the end of each substring which is then continued After modifying the keywords... COMMENT This keyword was modified by fxmrec KY_MREC = 'This keyword was modified by fxmcrd' NEWIKYS = 'modified_string' / ikys comment KY_IKYJ = 50 / This is a modified comment KY_IKYL = F / ikyl comment KY_IKYE = -1.2346E+01 / ikye comment KY_IKYD = -1.23456789012346E+01 / modified comment KY_IKYF = -12.3456 / ikyf comment KY_IKYG = -12.3456789012346 / ikyg comment COMMENT character at the end of each substring which is then continued After updating the keywords... COMMENT This keyword was modified by fxmrec KY_UCRD = 'This keyword was updated by fxucrd' NEWIKYS = 'updated_string' / ikys comment KY_IKYJ = 51 / This is a modified comment KY_IKYL = T / ikyl comment KY_IKYE = -1.3346E+01 / ikye comment KY_IKYD = -1.33456789012346E+01 / modified comment KY_IKYF = -13.3456 / ikyf comment KY_IKYG = -13.3456789012346 / ikyg comment COMMENT character at the end of each substring which is then continued Keywords found using wildcard search (should be 9)... KEY_PKYS= 'value_string' / fxpkys comment KEY_PKYL= T / fxpkyl comment KEY_PKYJ= 11 / [feet/second/second] fxpkyj comment KEY_PKYF= 12.12121 / fxpkyf comment KEY_PKYE= 1.313131E+01 / fxpkye comment KEY_PKYG= 14.14141414141414 / fxpkyg comment KEY_PKYD= 1.51515151515152E+01 / fxpkyd comment NEWIKYS = 'updated_string' / ikys comment KEY_PKYT= 12345678.1234567890123456 / fxpkyt comment ftibin status = 0 HDU number = 2 header contains 33 keywords located at keyword 1 header contains 33 keywords with room for 74 more TDIM3 = (1,2,8) 3 1 2 8 ftpcl_ status = 0 Find the column numbers a returned status value of 237 is expected and indicates that more than one column name matches the input column name template. Status = 219 indicates that there was no matching column name. Column Xvalue is number 3 status = 0 Column Avalue is number 1 status = 237 Column Lvalue is number 2 status = 237 Column Xvalue is number 3 status = 237 Column Bvalue is number 4 status = 237 Column Ivalue is number 5 status = 237 Column Jvalue is number 6 status = 237 Column Evalue is number 7 status = 237 Column Dvalue is number 8 status = 237 Column Cvalue is number 9 status = 237 Column Mvalue is number 10 status = 237 Column is number 0 status = 219 Information about each column: 15A 16 15 15 Avalue A 1.00 0.00 1234554321 1L 14 1 1 Lvalue m**2 L 1.00 0.00 1234554321 16X 1 16 1 Xvalue cm X 1.00 0.00 1234554321 1B 11 1 1 Bvalue erg/s B 1.00 0.00 99 1I 21 1 2 Ivalue km/s I 1.00 0.00 99 1J 41 1 4 Jvalue J 1.00 0.00 99 1E 42 1 4 Evalue E 1.00 0.00 1234554321 1D 82 1 8 Dvalue D 1.00 0.00 1234554321 1C 83 1 8 Cvalue C 1.00 0.00 1234554321 1M 163 1 16 Mvalue M 1.00 0.00 1234554321 ftitab status = 0 HDU number = 2 ftpcl_ status = 0 ASCII table: rowlen, nrows, tfields, extname: 76 11 5 Test-ASCII Name 1 A15 Ivalue 17 I10 m**2 Fvalue 28 F14.6 cm Evalue 43 E12.5 erg/s Dvalue 56 D21.14 km/s Data values read from ASCII table: first string 1 1 1 1. 1. second string 2 2 2 2. 2. 3 3 3 3. 3. UNDEFINED 4 4 4 4. 4. 5 5 5 5. 5. 6 6 6 6. 6. 7 7 7 7. 7. 8 8 8 8. 8. 9 9 9 9. 9. 10 10 10 10.10. 99 99 99 99.99. 1 1.000000 1.00000E+00 1.00000000000000E+00second string Column name is number 1 status = 0 Column Ivalue is number 2 status = 237 Column Fvalue is number 3 status = 237 Column Evalue is number 4 status = 237 Column Dvalue is number 5 status = 237 Column is number 0 status = 219 A15 16 1 15 Name 1 1.00 0.00 null1 I10 41 1 10 Ivalue 17 m**2 1.00 0.00 null2 F14.6 82 1 14 Fvalue 28 cm 1.00 0.00 null3 E12.5 42 1 12 Evalue 43 erg/s 1.00 0.00 null4 D21.14 82 1 21 Dvalue 56 km/s 1.00 0.00 null5 Data values after inserting 3 rows after row 2: first string 1 1 1 1. 1. second string 2 2 2 2. 2. 0 0 0 0. 0. 0 0 0 0. 0. 0 0 0 0. 0. 3 3 3 3. 3. UNDEFINED 4 4 4 4. 4. 5 5 5 5. 5. 6 6 6 6. 6. 7 7 7 7. 7. 8 8 8 8. 8. 9 9 9 9. 9. 10 10 10 10.10. 99 99 99 99.99. Data values after deleting 2 rows at row 10: first string 1 1 1 1. 1. second string 2 2 2 2. 2. 0 0 0 0. 0. 0 0 0 0. 0. 0 0 0 0. 0. 3 3 3 3. 3. UNDEFINED 4 4 4 4. 4. 5 5 5 5. 5. 6 6 6 6. 6. 9 9 9 9. 9. 10 10 10 10.10. 99 99 99 99.99. Data values after deleting column 3: first string 1 1 1. 1. second string 2 2 2. 2. 0 0 0. 0. 0 0 0. 0. 0 0 0. 0. 3 3 3. 3. UNDEFINED 4 4 4. 4. 5 5 5. 5. 6 6 6. 6. 9 9 9. 9. 10 10 10.10. 99 99 99.99. Data values after inserting column 5: first string 1 1 1. 1. 0 second string 2 2 2. 2. 0 0 0 0. 0. 0 0 0 0. 0. 0 0 0 0. 0. 0 3 3 3. 3. 0 UNDEFINED 4 4 4. 4. 0 5 5 5. 5. 0 6 6 6. 6. 0 9 9 9. 9. 0 10 10 10.10. 0 99 99 99.99. 0 HDU number = 3 Moved to binary table header contains 37 keywords with room for 70 more Binary table: nrows, tfields, extname, pcount: 21 10Test-BINTABLE 0 Avalue 15A Lvalue 1L m**2 Xvalue 16X cm Bvalue 1B erg/s Ivalue 1I km/s Jvalue 1J Evalue 1E Dvalue 1D Cvalue 1C Mvalue 1M Data values read from binary table: Bit column (X) data values: FTFFTTFF FTTTFFFF TTTTFFFF FTTTTTFF FFFFFFFF null string column value (should be blank): Read columns with ftgcv_: first string F 76 1 1 1 1. 1. 1. -2. 1. -2. second string T 112 2 2 2 2. 2. 3. -4. 3. -4. F 240 3 3 3 3. 3. 5. -6. 5. -6. NOT DEFINED F 124 0 -4 -4 -4. -4. 7. -8. 7. -8. NOT DEFINED T 0 5 5 5 5. 5. 9. -10. 9. -10. NOT DEFINED T 0 0 -6 -6 -6. -6. 11. -12. 11. -12. NOT DEFINED F 0 7 7 7 7. 7. 13. -14. 13. -14. NOT DEFINED F 0 0 -8 -8 -8. -8. 15. -16. 15. -16. NOT DEFINED F 0 9 9 9 9. 9. 17. -18. 17. -18. NOT DEFINED T 0 0 -10 -10 -10. -10. 19. -20. 19. -20. NOT DEFINED F 0 98 98 98 98. 98. 0. 0. 0. 0. NOT DEFINED T 0 12 12 12 12. 12. 0. 0. 0. 0. NOT DEFINED F 0 98 98 98 98. 98. 0. 0. 0. 0. NOT DEFINED F 0 0 -14 -14 -14. -14. 0. 0. 0. 0. NOT DEFINED F 0 98 98 98 98. 98. 0. 0. 0. 0. NOT DEFINED F 0 0 -16 -16 -16. -16. 0. 0. 0. 0. NOT DEFINED T 0 98 98 98 98. 98. 0. 0. 0. 0. NOT DEFINED T 0 0 -18 -18 -18. -18. 0. 0. 0. 0. NOT DEFINED T 0 98 98 98 98. 98. 0. 0. 0. 0. NOT DEFINED T 0 0 -20 -20 -20. -20. 0. 0. 0. 0. NOT DEFINED F 0 98 98 98 98. 98. 0. 0. 0. 0. Read columns with ftgcf_: first string F 76 1 1 1 1. 1. 1. -2. 1. -2. second string T 112 2 2 2 2. 2. 3. -4. 3. -4. F 240 3 3 3 3. 3. 5. -6. 5. -6. F 124 0 -4 -4 -4. -4. 7. -8. 7. -8. T 0 5 5 5 5. 5. 9. -10. 9. -10. T 0 0 -6 -6 -6. -6. 11. -12. 11. -12. F 0 7 7 7 7. 7. 13. -14. 13. -14. F 0 0 -8 -8 -8. -8. 15. -16. 15. -16. F 0 9 9 9 9. 9. 17. -18. 17. -18. T 0 0 -10 -10 -10. -10. 19. -20. 19. -20. F 0 99 99 T 0 12 12 F 0 99 99 F 0 0 -14 F 0 99 99 F 0 0 -16 T 0 99 99 T 0 0 -18 T 0 99 99 T 0 0 -20 F 0 99 99 Data values after inserting 3 rows after row 2: first string 1 1 1 1. 1. second string 2 2 2 2. 2. NOT DEFINED 0 0 0 0. 0. NOT DEFINED 0 0 0 0. 0. NOT DEFINED 0 0 0 0. 0. 3 3 3 3. 3. NOT DEFINED 0 -4 -4 -4. -4. NOT DEFINED 5 5 5 5. 5. NOT DEFINED 0 -6 -6 -6. -6. NOT DEFINED 7 7 7 7. 7. NOT DEFINED 0 -8 -8 -8. -8. NOT DEFINED 9 9 9 9. 9. NOT DEFINED 0 -10 -10 -10. -10. NOT DEFINED 98 98 98 98. 98. Data values after deleting 2 rows at row 10: first string 1 1 1 1. 1. second string 2 2 2 2. 2. NOT DEFINED 0 0 0 0. 0. NOT DEFINED 0 0 0 0. 0. NOT DEFINED 0 0 0 0. 0. 3 3 3 3. 3. NOT DEFINED 0 -4 -4 -4. -4. NOT DEFINED 5 5 5 5. 5. NOT DEFINED 0 -6 -6 -6. -6. NOT DEFINED 9 9 9 9. 9. NOT DEFINED 0 -10 -10 -10. -10. NOT DEFINED 98 98 98 98. 98. Data values after deleting column 6: first string 1 1 1. 1. second string 2 2 2. 2. NOT DEFINED 0 0 0. 0. NOT DEFINED 0 0 0. 0. NOT DEFINED 0 0 0. 0. 3 3 3. 3. NOT DEFINED 0 -4 -4. -4. NOT DEFINED 5 5 5. 5. NOT DEFINED 0 -6 -6. -6. NOT DEFINED 9 9 9. 9. NOT DEFINED 0 -10 -10. -10. NOT DEFINED 98 98 98. 98. Data values after inserting column 8: first string 1 1 1. 1. 0 second string 2 2 2. 2. 0 NOT DEFINED 0 0 0. 0. 0 NOT DEFINED 0 0 0. 0. 0 NOT DEFINED 0 0 0. 0. 0 3 3 3. 3. 0 NOT DEFINED 0 -4 -4. -4. 0 NOT DEFINED 5 5 5. 5. 0 NOT DEFINED 0 -6 -6. -6. 0 NOT DEFINED 9 9 9. 9. 0 NOT DEFINED 0 -10 -10. -10. 0 NOT DEFINED 98 98 98. 98. 0 Values after setting 1st 10 elements in column 8 = null: first string 1 1 1. 1. 98 second string 2 2 2. 2. 98 NOT DEFINED 0 0 0. 0. 98 NOT DEFINED 0 0 0. 0. 98 NOT DEFINED 0 0 0. 0. 98 3 3 3. 3. 98 NOT DEFINED 0 -4 -4. -4. 98 NOT DEFINED 5 5 5. 5. 98 NOT DEFINED 0 -6 -6. -6. 98 NOT DEFINED 9 9 9. 9. 98 NOT DEFINED 0 -10 -10. -10. 0 NOT DEFINED 98 98 98. 98. 0 ftibin status = 0 HDU number = 2 0 1000 10000 33000 66000 -999 0 1000 10000 32768 65535 -999 0 1000 10000 32800 65500 -999 0 1 10 33 66 -999 -32768-31768-22768 0 32767 -999 -1 9 99 327 654 -999 Create image extension: ftiimg status = 0 HDU number = 3 Wrote whole 2D array: ftp2di status = 0 Read whole 2D array: ftg2di status = 0 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 0 0 0 0 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 0 0 0 0 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 0 0 0 0 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 0 0 0 0 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 0 0 0 0 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 0 0 0 0 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 0 0 0 0 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 0 0 0 0 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 0 0 0 0 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 0 0 0 0 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 0 0 0 0 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 0 0 0 0 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 0 0 0 0 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 0 0 0 0 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 0 0 0 0 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 0 0 0 0 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 0 0 0 0 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 0 0 0 0 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 0 0 0 0 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 0 0 0 0 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 0 0 0 0 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 0 0 0 0 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 0 0 0 0 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 0 0 0 0 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Wrote subset 2D array: ftpssi status = 0 Read whole 2D array: ftg2di status = 0 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 0 0 0 0 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 0 0 0 0 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 0 0 0 0 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 0 0 0 0 40 41 42 43 0 -1 -2 -3 -4 -5 -6 -7 -8 -9 54 0 0 0 0 50 51 52 53 -10 -11 -12 -13 -14 -15 -16 -17 -18 -19 64 0 0 0 0 60 61 62 63 -20 -21 -22 -23 -24 -25 -26 -27 -28 -29 74 0 0 0 0 70 71 72 73 -30 -31 -32 -33 -34 -35 -36 -37 -38 -39 84 0 0 0 0 80 81 82 83 -40 -41 -42 -43 -44 -45 -46 -47 -48 -49 94 0 0 0 0 90 91 92 93 -50 -51 -52 -53 -54 -55 -56 -57 -58 -59 104 0 0 0 0 100 101 102 103 -60 -61 -62 -63 -64 -65 -66 -67 -68 -69 114 0 0 0 0 110 111 112 113 -70 -71 -72 -73 -74 -75 -76 -77 -78 -79 124 0 0 0 0 120 121 122 123 -80 -81 -82 -83 -84 -85 -86 -87 -88 -89 134 0 0 0 0 130 131 132 133 -90 -91 -92 -93 -94 -95 -96 -97 -98 -99 144 0 0 0 0 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 0 0 0 0 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 0 0 0 0 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 0 0 0 0 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 0 0 0 0 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 0 0 0 0 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 0 0 0 0 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 0 0 0 0 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 0 0 0 0 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 0 0 0 0 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 0 0 0 0 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Read subset of 2D array: ftgsvi status = 0 41 43 -1 -3 -5 71 73 -31 -33 -35 Create image extension: ftiimg status = 0 HDU number = 4 Create temporary file: ftinit status = 0 Copy image extension to primary array of tmp file. ftcopy status = 0 SIMPLE = T / file does conform to FITS standard BITPIX = 16 / number of bits per data pixel NAXIS = 2 / number of data axes NAXIS1 = 15 / length of data axis 1 NAXIS2 = 25 / length of data axis 2 EXTEND = T / FITS dataset may contain extensions Delete the tmp file: ftdelt status = 0 Delete the image extension hdutype, status = 1 0 HDU number = 4 ftcrhd status = 0 Variable length arrays: ftphbn status = 0 ftpcl_ status = 0 PCOUNT = 4446 HDU number = 6 A 0 L 0 F X 0 F B 1 0 I 1 0 J 1 0 E 1. 0. D 1. 0. Column 8 repeat and offset = 1 14 A ab 0 L 0 F T X 0 F T B 99 2 0 I 99 2 0 J 99 2 0 E 99. 2. 0. D 99. 2. 0. Column 8 repeat and offset = 2 49 A abc 0 L 0 F F F X 0 F T F B 1 99 3 0 I 1 99 3 0 J 1 99 3 0 E 1.99. 3. 0. D 1.99. 3. 0. Column 8 repeat and offset = 3 105 A abcd 0 L 0 F T F F X 0 F T F F B 1 2 99 4 0 I 1 2 99 4 0 J 1 2 99 4 0 E 1. 2.99. 4. 0. D 1. 2.99. 4. 0. Column 8 repeat and offset = 4 182 A abcde 0 L 0 F T F F T X 0 F T F F T B 1 2 3 99 5 0 I 1 2 3 99 5 0 J 1 2 3 99 5 0 E 1. 2. 3.99. 5. 0. D 1. 2. 3.99. 5. 0. Column 8 repeat and offset = 5 280 A abcdef 0 L 0 F T F F F T X 0 F T F F T T B 1 2 3 4 99 6 0 I 1 2 3 4 99 6 0 J 1 2 3 4 99 6 0 E 1. 2. 3. 4.99. 6. 0. D 1. 2. 3. 4.99. 6. 0. Column 8 repeat and offset = 6 399 A abcdefg 0 L 0 F T F F T F F X 0 F T F F T T F B 1 2 3 4 5 99 7 0 I 1 2 3 4 5 99 7 0 J 1 2 3 4 5 99 7 0 E 1. 2. 3. 4. 5.99. 7. 0. D 1. 2. 3. 4. 5.99. 7. 0. Column 8 repeat and offset = 7 539 A abcdefgh 0 L 0 F T F F T T F F X 0 F T F F T T F F B 1 2 3 4 5 6 99 8 0 I 1 2 3 4 5 6 99 8 0 J 1 2 3 4 5 6 99 8 0 E 1. 2. 3. 4. 5. 6.99. 8. 0. D 1. 2. 3. 4. 5. 6.99. 8. 0. Column 8 repeat and offset = 8 700 A abcdefghi 0 L 0 F T F F T T F F F X 0 F T F F T T F F F B 1 2 3 4 5 6 7 99 9 0 I 1 2 3 4 5 6 7 99 9 0 J 1 2 3 4 5 6 7 99 9 0 E 1. 2. 3. 4. 5. 6. 7.99. 9. 0. D 1. 2. 3. 4. 5. 6. 7.99. 9. 0. Column 8 repeat and offset = 9 883 A abcdefghij 0 L 0 F T F F T T F F F T X 0 F T F F T T F F F T B 1 2 3 4 5 6 7 8 99 10 0 I 1 2 3 4 5 6 7 8 99 10 0 J 1 2 3 4 5 6 7 8 99 10 0 E 1. 2. 3. 4. 5. 6. 7. 8.99.10. 0. D 1. 2. 3. 4. 5. 6. 7. 8.99.10. 0. Column 8 repeat and offset = 10 1087 A abcdefghijk 0 L 0 F T F F T T F F F F T X 0 F T F F T T F F F T T B 1 2 3 4 5 6 7 8 9 99 11 0 I 1 2 3 4 5 6 7 8 9 99 11 0 J 1 2 3 4 5 6 7 8 9 99 11 0 E 1. 2. 3. 4. 5. 6. 7. 8. 9.99.11. 0. D 1. 2. 3. 4. 5. 6. 7. 8. 9.99.11. 0. Column 8 repeat and offset = 11 1312 A abcdefghijkl 0 L 0 F T F F T T F F F T F T X 0 F T F F T T F F F T T T B 1 2 3 4 5 6 7 8 9 10 99 12 0 I 1 2 3 4 5 6 7 8 9 10 99 12 0 J 1 2 3 4 5 6 7 8 9 10 99 12 0 E 1. 2. 3. 4. 5. 6. 7. 8. 9.10.99.12. 0. D 1. 2. 3. 4. 5. 6. 7. 8. 9.10.99.12. 0. Column 8 repeat and offset = 12 1558 A abcdefghijklm 0 L 0 F T F F T T F F F T T F F X 0 F T F F T T F F F T T T F B 1 2 3 4 5 6 7 8 9 10 11 99 13 0 I 1 2 3 4 5 6 7 8 9 10 11 99 13 0 J 1 2 3 4 5 6 7 8 9 10 11 99 13 0 E 1. 2. 3. 4. 5. 6. 7. 8. 9.10.11.99.13. 0. D 1. 2. 3. 4. 5. 6. 7. 8. 9.10.11.99.13. 0. Column 8 repeat and offset = 13 1825 A abcdefghijklmn 0 L 0 F T F F T T F F F T T T F F X 0 F T F F T T F F F T T T F F B 1 2 3 4 5 6 7 8 9 10 11 12 99 14 0 I 1 2 3 4 5 6 7 8 9 10 11 12 99 14 0 J 1 2 3 4 5 6 7 8 9 10 11 12 99 14 0 E 1. 2. 3. 4. 5. 6. 7. 8. 9.10.11.12.99.14. 0. D 1. 2. 3. 4. 5. 6. 7. 8. 9.10.11.12.99.14. 0. Column 8 repeat and offset = 14 2113 A abcdefghijklmno 0 L 0 F T F F T T F F F T T T F F F X 0 F T F F T T F F F T T T F F F B 1 2 3 4 5 6 7 8 9 10 11 12 13 99 15 0 I 1 2 3 4 5 6 7 8 9 10 11 12 13 99 15 0 J 1 2 3 4 5 6 7 8 9 10 11 12 13 99 15 0 E 1. 2. 3. 4. 5. 6. 7. 8. 9.10.11.12.13.99.15. 0. D 1. 2. 3. 4. 5. 6. 7. 8. 9.10.11.12.13.99.15. 0. Column 8 repeat and offset = 15 2422 A abcdefghijklmnop 0 L 0 F T F F T T F F F T T T F F F F X 0 F T F F T T F F F T T T F F F F B 1 2 3 4 5 6 7 8 9 10 11 12 13 14 99 16 0 I 1 2 3 4 5 6 7 8 9 10 11 12 13 14 99 16 0 J 1 2 3 4 5 6 7 8 9 10 11 12 13 14 99 16 0 E 1. 2. 3. 4. 5. 6. 7. 8. 9.10.11.12.13.14.99.16. 0. D 1. 2. 3. 4. 5. 6. 7. 8. 9.10.11.12.13.14.99.16. 0. Column 8 repeat and offset = 16 2752 A abcdefghijklmnopq 0 L 0 F T F F T T F F F T T T F F F F T X 0 F T F F T T F F F T T T F F F F T B 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 99 17 0 I 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 99 17 0 J 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 99 17 0 E 1. 2. 3. 4. 5. 6. 7. 8. 9.10.11.12.13.14.15.99.17. 0. D 1. 2. 3. 4. 5. 6. 7. 8. 9.10.11.12.13.14.15.99.17. 0. Column 8 repeat and offset = 17 3104 A abcdefghijklmnopqr 0 L 0 F T F F T T F F F T T T F F F F F T X 0 F T F F T T F F F T T T F F F F T T B 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 99 18 0 I 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 99 18 0 J 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 99 18 0 E 1. 2. 3. 4. 5. 6. 7. 8. 9.10.11.12.13.14.15.16.99.18. 0. D 1. 2. 3. 4. 5. 6. 7. 8. 9.10.11.12.13.14.15.16.99.18. 0. Column 8 repeat and offset = 18 3477 A abcdefghijklmnopqrs 0 L 0 F T F F T T F F F T T T F F F F T F T X 0 F T F F T T F F F T T T F F F F T T T B 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 99 19 0 I 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 99 19 0 J 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 99 19 0 E 1. 2. 3. 4. 5. 6. 7. 8. 9.10.11.12.13.14.15.16.17.99.19. 0. D 1. 2. 3. 4. 5. 6. 7. 8. 9.10.11.12.13.14.15.16.17.99.19. 0. Column 8 repeat and offset = 19 3871 A abcdefghijklmnopqrst 0 L 0 F T F F T T F F F T T T F F F F T T F T X 0 F T F F T T F F F T T T F F F F T T T T B 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 99 20 0 I 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 99 20 0 J 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 99 20 0 E 1. 2. 3. 4. 5. 6. 7. 8. 9.10.11.12.13.14.15.16.17.18.99.20. 0. D 1. 2. 3. 4. 5. 6. 7. 8. 9.10.11.12.13.14.15.16.17.18.99.20. 0. Column 8 repeat and offset = 20 4286 Create image extension: ftiimg status = 0 ftppr status = 0 Image values written with ftppr and read with ftgpv: 0 2 4 6 8 10 12 14 16 18 20 22 24 26 F (byte) 0 2 4 6 8 10 12 14 16 18 20 22 24 26 F (short) 0 2 4 6 8 10 12 14 16 18 20 22 24 26 F (int) 0 2 4 6 8 10 12 14 16 18 20 22 24 26 F (long) 0. 2. 4. 6. 8.10.12.14.16.18.20.22.24.26. F (float) 0. 2. 4. 6. 8.10.12.14.16.18.20.22.24.26. F (double) Wrote WCS keywords status = 0 Read WCS keywords with ftgics status = 0 CRVAL1, CRVAL2 = 45.830 63.570 CRPIX1, CRPIX2 = 256.000 257.000 CDELT1, CDELT2 = -0.00277777 0.00277777 Rotation = 0.000 CTYPE =-TAN Calculated sky coord. with ftwldp status = 0 Pixels ( 0.500000 0.500000) --> ( 47.385204 62.848968) Sky Calculated pixel coord. with ftxypx status = 0 Sky ( 47.385204 62.848968) --> ( 0.500000 0.500000) Pixels ftitab status = 0 ftpcl status = 0 Column values written with ftpcl and read with ftgcl: 0 3 6 9 12 15 18 21 24 27 F (byte) 0 3 6 9 12 15 18 21 24 27 F (short) 0 3 6 9 12 15 18 21 24 27 F (int) 0 3 6 9 12 15 18 21 24 27 F (long) 0. 3. 6. 9.12.15.18.21.24.27. F (float) 0. 3. 6. 9.12.15.18.21.24.27. F (double) Repeatedly move to the 1st 4 HDUs of the file: Encode checksum: 1234567890.0 -> dCW2fBU0dBU0dBU0 Decode checksum: dCW2fBU0dBU0dBU0 -> 1234567890.0 DATASUM = '2338390162' ftgcks data checksum, status = 2338390162.0 0 ftvcks datastatus, hdustatus, status = 1 1 0 ftupck status = 0 DATASUM = '2338390162' ftvcks datastatus, hdustatus, status = 1 1 0 ftclos status = 0 Normally, there should be 8 error messages on the stack all regarding 'numerical overflows': Numerical overflow during type conversion while writing FITS data. Numerical overflow during type conversion while writing FITS data. Numerical overflow during type conversion while writing FITS data. Numerical overflow during type conversion while writing FITS data. Numerical overflow during type conversion while writing FITS data. Numerical overflow during type conversion while writing FITS data. Numerical overflow during type conversion while writing FITS data. Numerical overflow during type conversion while writing FITS data. Status = 0: OK - no error healpy-1.8.1/cfitsio/README_OLD.win0000654000175000017530000000671612272000775017241 0ustar zoncaplanck00000000000000=============================================================================== =============================================================================== = NOTE: This is the old version of the README.win32 file that was distributed = with CFITSIO up until version 3.35 in 2013. These instruction may still work = with more recent versions of CFITSIO, however, users are strongly urged to = use the CMake procedures that are now documented in the new README.win32 file. =============================================================================== =============================================================================== Instructions on using CFITSIO on Windows platforms for C programmers These instructions use a simple DOS-style command window. It is also possible to build and use CFITSIO within a GUI programming environment such as Visual Studio, but this is not supported here. =============================================================================== 1. Build the CFITSIO dll library This step will create the cfitsio.def, cfitsio.dll, and cfitsio.lib files. (If you downloaded the CFITSIO .zip file that contains the pre-built binary .dll file, then SKIP THIS STEP). A. With Microsoft Visual C++: 1. Open a DOS command window and execute the vcvars32.bat file that is distributed with older versions of Visual C++, or simply open the Visual C++ command window (e.g., when using Visual Studio 2010). 2. Unpack the CFITSIO source files (cfitxxxx.zip) into a new empty directory 3. In the DOS command window, cd to that directory and enter the following commands: nmake winDumpExts.mak nmake makefile.vcc (ignore the compiler warning messages) B: With Borland C++: First, follow the instructions provided by Borland to set up the proper environment variables and configure files for the compiler. Unpack the cfitsio.zip source file distribution into a suitable directory. In a DOS command window, cd to that directory and then execute the makepc.bat batch file on the command line to build the CFITSIO library, and the testprog and cookbook sample programs. =============================================================================== 2. Test the CFITSIO library with Visual C++ Compile and link the testprog.c test program. When using Visual Studio, the command is: cl /MD testprog.c cfitsio.lib This will create the testprog.exe executable program. Running this program should print out a long series of diagnostic messages that should end with "Status = 0; OK - no error" =============================================================================== 3. Compile and link an application program that calls CFITSIO routines with Visual C++ Include the fitsio.h and longnam.h header files in the C source code. Link the program with the cfitsio.lib file: cl /MD your_program.c cfitsio.lib NOTE: The /MD command line switch must be specified on the cl command line to force the compiler/linker to use the appropriete runtime library. If this switch is omitted, then the fits_report_error function in CFITSIO will likely crash. When building programs in the Visual Studio environment, one can force the equivalent of the /MD switch by selecting 'Settings...' under the 'Project' menu, then click on the C/C++ tab and select the 'Code Generator' category. Then under 'User Run-time Library' select 'Multithreaded DLL'. healpy-1.8.1/cfitsio/testprog.out0000654000175000017530000007673712272000775017501 0ustar zoncaplanck00000000000000CFITSIO TESTPROG Try opening then closing a nonexistent file: ffopen fptr, status = 0 104 (expect an error) ffclos status = 115 ffinit create new file status = 0 Name of file = testprog.fit, I/O mode = 1 test writing of long string keywords: 123456789012345678901234567890123456789012345678901234567890123456789012345 '12345678901234567890123456789012345678901234567890123456789012345678' 1234567890123456789012345678901234567890123456789012345678901234'6789012345 '1234567890123456789012345678901234567890123456789012345678901234''67' 1234567890123456789012345678901234567890123456789012345678901234''789012345 '1234567890123456789012345678901234567890123456789012345678901234''''' 1234567890123456789012345678901234567890123456789012345678901234567'9012345 '1234567890123456789012345678901234567890123456789012345678901234567' ffflus status = 0 HDU number = 1 Values read back from primary array (99 = null pixel) The 1st, and every 4th pixel should be undefined: 99 2 3 99 5 6 7 99 9 10 11 99 13 14 15 99 17 18 19 99 1 (ffgpvb) 99 2 3 99 5 6 7 99 9 10 11 99 13 14 15 99 17 18 19 99 1 (ffgpvi) 99 2 3 99 5 6 7 99 9 10 11 99 13 14 15 99 17 18 19 99 1 (ffgpvj) 99 2 3 99 5 6 7 99 9 10 11 99 13 14 15 99 17 18 19 99 1 (ffgpve) 99 2 3 99 5 6 7 99 9 10 11 99 13 14 15 99 17 18 19 99 1 (ffgpvd) * 2 3 * 5 6 7 * 9 10 11 * 13 14 15 * 17 18 19 * 1 (ffgpfb) * 2 3 * 5 6 7 * 9 10 11 * 13 14 15 * 17 18 19 * 1 (ffgpfi) * 2 3 * 5 6 7 * 9 10 11 * 13 14 15 * 17 18 19 * 1 (ffgpfj) * 2 3 * 5 6 7 * 9 10 11 * 13 14 15 * 17 18 19 * 1 (ffgpfe) * 2 3 * 5 6 7 * 9 10 11 * 13 14 15 * 17 18 19 * 1 (ffgpfd) Closed then reopened the FITS file 10 times. HDU number = 1 Name of file = testprog.fit, I/O mode = 1 Read back keywords: simple = 1, bitpix = 32, naxis = 2, naxes = (10, 2) pcount = 0, gcount = 1, extend = 1 KEY_PREC= 'This keyword was written by fxprec' / comment goes here KEY_PREC : 'This keyword was written by fxprec' : comment goes here : KEY_PREC= 'This keyword was written by fxprec' / comment goes here KY_PKNS1 : 'first string' : fxpkns comment : KEY_PKYS value_string fxpkys comment 0 KEY_PKYL 1 fxpkyl comment 0 KEY_PKYJ 11 fxpkyj comment 0 KEY_PKYJ 11.000000 fxpkyj comment 0 KEY_PKYJ 11.000000 fxpkyj comment 0 KEY_PKY S value_string fxpkys comment 0 KEY_PKY L 1 fxpkyl comment 0 KEY_PKY BYTE 11 fxpkyj comment 0 KEY_PKY SHORT 11 fxpkyj comment 0 KEY_PKY INT 11 fxpkyj comment 0 KEY_PKY J 11 fxpkyj comment 0 KEY_PKY E 13.131310 fxpkye comment 0 KEY_PKY D 15.151515 fxpkyd comment 0 KEY_PKYF 12.121210 fxpkyf comment 0 KEY_PKYE 13.131310 fxpkye comment 0 KEY_PKYG 14.14141414141414 fxpkyg comment 0 KEY_PKYD 15.15151515151520 fxpkyd comment 0 KEY_PKYC 13.131310 14.141410 fxpkyc comment 0 KEY_PKFC 13.131313 14.141414 fxpkfc comment 0 KEY_PKYM 15.151515 16.161616 fxpkym comment 0 KEY_PKFM 15.151515 16.161616 fxpkfm comment 0 KEY_PKYT 12345678 0.12345678901235 fxpkyt comment 0 KEY_PKY J 11 [km/s/Mpc] fxpkyj comment 0 KEY_PKY units = km/s/Mpc KEY_PKY J 11 fxpkyj comment 0 KEY_PKY units = KEY_PKY J 11 [feet/second/second] fxpkyj comment 0 KEY_PKY units = feet/second/second KEY_PKLS long string value = This is a very long string value that is continued over more than one keyword. header contains 65 keywords; located at keyword 27 ffgkns: first string, second string, ffgknl: 1, 0, 1 ffgknj: 11, 12, 13 ffgkne: 13.131310, 14.141410, 15.151520 ffgknd: 15.151515, 16.161616, 17.171717 Before deleting the HISTORY and DATE keywords... COMMENT HISTORY DATE KY_PKNS1 After deleting the keywords... COMMENT This keyword was written by fxpcom. KY_PKNS1= 'first string' / fxpkns comment After inserting the keywords... COMMENT This keyword was written by fxpcom. KY_IREC = 'This keyword inserted by fxirec' KY_IKYS = 'insert_value_string' / ikys comment KY_IKYJ = 49 / ikyj comment KY_IKYL = T / ikyl comment KY_IKYE = 1.2346E+01 / ikye comment KY_IKYD = 1.23456789012346E+01 / ikyd comment KY_IKYF = 12.3456 / ikyf comment KY_IKYG = 12.3456789012346 / ikyg comment KY_PKNS1= 'first string' / fxpkns comment After modifying the keywords... COMMENT This keyword was modified by fxmrec KY_MREC = 'This keyword was modified by fxmcrd' NEWIKYS = 'modified_string' / ikys comment KY_IKYJ = 50 / This is a modified comment KY_IKYL = F / ikyl comment KY_IKYE = -1.2346E+01 / ikye comment KY_IKYD = -1.23456789012346E+01 / modified comment KY_IKYF = -12.3456 / ikyf comment KY_IKYG = -12.3456789012346 / ikyg comment KY_PKNS1= 'first string' / fxpkns comment After updating the keywords... COMMENT This keyword was modified by fxmrec KY_UCRD = 'This keyword was updated by fxucrd' NEWIKYS = 'updated_string' / ikys comment KY_IKYJ = 51 / This is a modified comment KY_IKYL = T / ikyl comment KY_IKYE = -1.3346E+01 / ikye comment KY_IKYD = -1.33456789012346E+01 / modified comment KY_IKYF = -13.3456 / ikyf comment KY_IKYG = -13.3456789012346 / ikyg comment KY_PKNS1= 'first string' / fxpkns comment Keywords found using wildcard search (should be 13)... KEY_PKYS= 'value_string' / fxpkys comment KEY_PKYL= T / fxpkyl comment KEY_PKYJ= 11 / [feet/second/second] fxpkyj comment KEY_PKYF= 12.12121 / fxpkyf comment KEY_PKYE= 1.313131E+01 / fxpkye comment KEY_PKYG= 14.14141414141414 / fxpkyg comment KEY_PKYD= 1.51515151515152E+01 / fxpkyd comment KEY_PKYC= (1.313131E+01, 1.414141E+01) / fxpkyc comment KEY_PKYM= (1.51515151515152E+01, 1.61616161616162E+01) / fxpkym comment KEY_PKFC= (13.131313, 14.141414) / fxpkfc comment KEY_PKFM= (15.15151515151515, 16.16161616161616) / fxpkfm comment KEY_PKYT= 12345678.1234567890123456 / fxpkyt comment NEWIKYS = 'updated_string' / ikys comment Copied keyword: ffgkne: 14.141410, 15.151520, 13.131310 Updated header using template file (ffpktp) ffibin status = 0 HDU number = 2 header contains 33 keywords; located at keyword 1 header contains 33 keywords with room for 74 more TDIM3 = (1,2,8), 3, 1, 2, 8 ffpcl_ status = 0 Find the column numbers; a returned status value of 237 is expected and indicates that more than one column name matches the input column name template. Status = 219 indicates that there was no matching column name. Column Xvalue is number 3; status = 0. Column Avalue is number 1; status = 237. Column Lvalue is number 2; status = 237. Column Xvalue is number 3; status = 237. Column Bvalue is number 4; status = 237. Column Ivalue is number 5; status = 237. Column Jvalue is number 6; status = 237. Column Evalue is number 7; status = 237. Column Dvalue is number 8; status = 237. Column Cvalue is number 9; status = 237. Column Mvalue is number 10; status = 237. Column is number 0; status = 219. Information about each column: 15A 16 15 15 Avalue, , A, 15, 1.000000, 0.000000, 1234554321, . 1L 14 1 1 Lvalue, m**2, L, 1, 1.000000, 0.000000, 1234554321, . 16X 1 16 1 Xvalue, cm, X, 16, 1.000000, 0.000000, 1234554321, . 1B 11 1 1 Bvalue, erg/s, B, 1, 1.000000, 0.000000, 99, . 1I 21 1 2 Ivalue, km/s, I, 1, 1.000000, 0.000000, 99, . 1J 41 1 4 Jvalue, , J, 1, 1.000000, 0.000000, 99, . 1E 42 1 4 Evalue, , E, 1, 1.000000, 0.000000, 1234554321, . 1D 82 1 8 Dvalue, , D, 1, 1.000000, 0.000000, 1234554321, . 1C 83 1 8 Cvalue, , C, 1, 1.000000, 0.000000, 1234554321, . 1M 163 1 16 Mvalue, , M, 1, 1.000000, 0.000000, 1234554321, . ffitab status = 0 HDU number = 2 ffpcl_ status = 0 ASCII table: rowlen, nrows, tfields, extname: 76 11 5 Test-ASCII Name 1 A15 Ivalue 17 I10 m**2 Fvalue 28 F14.6 cm Evalue 43 E12.5 erg/s Dvalue 56 D21.14 km/s Data values read from ASCII table: first string 1 1 1 1.0 1.0 second string 2 2 2 2.0 2.0 3 3 3 3.0 3.0 UNDEFINED 4 4 4 4.0 4.0 5 5 5 5.0 5.0 6 6 6 6.0 6.0 7 7 7 7.0 7.0 8 8 8 8.0 8.0 9 9 9 9.0 9.0 10 10 10 10.0 10.0 99 99 99 99.0 99.0 1 1.000000 1.00000E+00 1.00000000000000E+00second string Column name is number 1; status = 0. Column Ivalue is number 2; status = 237. Column Fvalue is number 3; status = 237. Column Evalue is number 4; status = 237. Column Dvalue is number 5; status = 237. Column is number 0; status = 219. A15 16 1 15 Name, 1, , A15, 1.000000, 0.000000, null1, . I10 41 1 10 Ivalue, 17, m**2, I10, 1.000000, 0.000000, null2, . F14.6 82 1 14 Fvalue, 28, cm, F14.6, 1.000000, 0.000000, null3, . E12.5 42 1 12 Evalue, 43, erg/s, E12.5, 1.000000, 0.000000, null4, . D21.14 82 1 21 Dvalue, 56, km/s, D21.14, 1.000000, 0.000000, null5, . Data values after inserting 3 rows after row 2: first string 1 1 1 1.0 1.0 second string 2 2 2 2.0 2.0 0 0 0 0.0 0.0 0 0 0 0.0 0.0 0 0 0 0.0 0.0 3 3 3 3.0 3.0 UNDEFINED 4 4 4 4.0 4.0 5 5 5 5.0 5.0 6 6 6 6.0 6.0 7 7 7 7.0 7.0 8 8 8 8.0 8.0 9 9 9 9.0 9.0 10 10 10 10.0 10.0 99 99 99 99.0 99.0 Data values after deleting 2 rows at row 10: first string 1 1 1 1.0 1.0 second string 2 2 2 2.0 2.0 0 0 0 0.0 0.0 0 0 0 0.0 0.0 0 0 0 0.0 0.0 3 3 3 3.0 3.0 UNDEFINED 4 4 4 4.0 4.0 5 5 5 5.0 5.0 6 6 6 6.0 6.0 9 9 9 9.0 9.0 10 10 10 10.0 10.0 99 99 99 99.0 99.0 Data values after deleting column 3: first string 1 1 1.0 1.0 second string 2 2 2.0 2.0 0 0 0.0 0.0 0 0 0.0 0.0 0 0 0.0 0.0 3 3 3.0 3.0 UNDEFINED 4 4 4.0 4.0 5 5 5.0 5.0 6 6 6.0 6.0 9 9 9.0 9.0 10 10 10.0 10.0 99 99 99.0 99.0 Data values after inserting column 5: first string 1 1 1.0 1.0 0 second string 2 2 2.0 2.0 0 0 0 0.0 0.0 0 0 0 0.0 0.0 0 0 0 0.0 0.0 0 3 3 3.0 3.0 0 UNDEFINED 4 4 4.0 4.0 0 5 5 5.0 5.0 0 6 6 6.0 6.0 0 9 9 9.0 9.0 0 10 10 10.0 10.0 0 99 99 99.0 99.0 0 Create temporary file: ffinit status = 0 Create null primary array: ffiimg status = 0 Create ASCII table with 0 columns: ffitab status = 0 copy column, ffcpcl status = 0 copy column, ffcpcl status = 0 copy column, ffcpcl status = 0 copy column, ffcpcl status = 0 Create Binary table with 0 columns: ffibin status = 0 copy column, ffcpcl status = 0 copy column, ffcpcl status = 0 copy column, ffcpcl status = 0 copy column, ffcpcl status = 0 Delete the tmp file: ffdelt status = 0 HDU number = 3 header contains 38 keywords with room for 69 more Binary table: nrows, tfields, extname, pcount: 21 10 Test-BINTABLE 0 Avalue 15A Lvalue 1L m**2 Xvalue 16X cm Bvalue 1B erg/s Ivalue 1I km/s Jvalue 1J Evalue 1E Dvalue 1D Cvalue 1C Mvalue 1M Data values read from binary table: Bit column (X) data values: 01001100 01110000 11110000 01111100 00000000 null string column value = -- (should be --) Read columns with ffgcv_: first string 0 76 1 1 1 1.0 1.0 ( 1.0, -2.0) ( 1.0, -2.0) second string 1 112 2 2 2 2.0 2.0 ( 3.0, -4.0) ( 3.0, -4.0) 0 240 3 3 3 3.0 3.0 ( 5.0, -6.0) ( 5.0, -6.0) NOT DEFINED 0 124 0 -4 -4 -4.0 -4.0 ( 7.0, -8.0) ( 7.0, -8.0) NOT DEFINED 1 0 5 5 5 5.0 5.0 ( 9.0,-10.0) ( 9.0,-10.0) NOT DEFINED 1 0 0 -6 -6 -6.0 -6.0 ( 11.0,-12.0) ( 11.0,-12.0) NOT DEFINED 0 0 7 7 7 7.0 7.0 ( 13.0,-14.0) ( 13.0,-14.0) NOT DEFINED 0 0 0 -8 -8 -8.0 -8.0 ( 15.0,-16.0) ( 15.0,-16.0) NOT DEFINED 0 0 9 9 9 9.0 9.0 ( 17.0,-18.0) ( 17.0,-18.0) NOT DEFINED 1 0 0 -10 -10 -10.0 -10.0 ( 19.0,-20.0) ( 19.0,-20.0) NOT DEFINED 0 0 98 98 98 98.0 98.0 ( 0.0, 0.0) ( 0.0, 0.0) NOT DEFINED 1 0 12 12 12 12.0 12.0 ( 0.0, 0.0) ( 0.0, 0.0) NOT DEFINED 0 0 98 98 98 98.0 98.0 ( 0.0, 0.0) ( 0.0, 0.0) NOT DEFINED 0 0 0 -14 -14 -14.0 -14.0 ( 0.0, 0.0) ( 0.0, 0.0) NOT DEFINED 0 0 98 98 98 98.0 98.0 ( 0.0, 0.0) ( 0.0, 0.0) NOT DEFINED 0 0 0 -16 -16 -16.0 -16.0 ( 0.0, 0.0) ( 0.0, 0.0) NOT DEFINED 1 0 98 98 98 98.0 98.0 ( 0.0, 0.0) ( 0.0, 0.0) NOT DEFINED 1 0 0 -18 -18 -18.0 -18.0 ( 0.0, 0.0) ( 0.0, 0.0) NOT DEFINED 1 0 98 98 98 98.0 98.0 ( 0.0, 0.0) ( 0.0, 0.0) NOT DEFINED 1 0 0 -20 -20 -20.0 -20.0 ( 0.0, 0.0) ( 0.0, 0.0) NOT DEFINED 0 0 98 98 98 98.0 98.0 ( 0.0, 0.0) ( 0.0, 0.0) Read columns with ffgcf_: first string 0 76 1 1 1 1.0 1.0 ( 1.0, -2.0) ( 1.0, -2.0) second string 1 112 2 2 2 2.0 2.0 ( 3.0, -4.0) ( 3.0, -4.0) 0 240 3 3 3 3.0 3.0 ( 5.0, -6.0) ( 5.0, -6.0) 0 124 0 -4 -4 -4.0 -4.0 ( 7.0, -8.0) ( 7.0, -8.0) 1 0 5 5 5 5.0 5.0 ( 9.0,-10.0) ( 9.0,-10.0) 1 0 0 -6 -6 -6.0 -6.0 ( 11.0,-12.0) ( 11.0,-12.0) 0 0 7 7 7 7.0 7.0 ( 13.0,-14.0) ( 13.0,-14.0) 0 0 0 -8 -8 -8.0 -8.0 ( 15.0,-16.0) ( 15.0,-16.0) 0 0 9 9 9 9.0 9.0 ( 17.0,-18.0) ( 17.0,-18.0) 1 0 0 -10 -10 -10.0 -10.0 ( 19.0,-20.0) ( 19.0,-20.0) 0 0 99 99 1 0 12 12 0 0 99 99 0 0 0 -14 0 0 99 99 0 0 0 -16 1 0 99 99 1 0 0 -18 1 0 99 99 1 0 0 -20 0 0 99 99 Data values after inserting 3 rows after row 2: first string 1 1 1 1.0 1.0 second string 2 2 2 2.0 2.0 NOT DEFINED 0 0 0 0.0 0.0 NOT DEFINED 0 0 0 0.0 0.0 NOT DEFINED 0 0 0 0.0 0.0 3 3 3 3.0 3.0 NOT DEFINED 0 -4 -4 -4.0 -4.0 NOT DEFINED 5 5 5 5.0 5.0 NOT DEFINED 0 -6 -6 -6.0 -6.0 NOT DEFINED 7 7 7 7.0 7.0 NOT DEFINED 0 -8 -8 -8.0 -8.0 NOT DEFINED 9 9 9 9.0 9.0 NOT DEFINED 0 -10 -10 -10.0 -10.0 NOT DEFINED 98 98 98 98.0 98.0 Data values after deleting 2 rows at row 10: first string 1 1 1 1.0 1.0 second string 2 2 2 2.0 2.0 NOT DEFINED 0 0 0 0.0 0.0 NOT DEFINED 0 0 0 0.0 0.0 NOT DEFINED 0 0 0 0.0 0.0 3 3 3 3.0 3.0 NOT DEFINED 0 -4 -4 -4.0 -4.0 NOT DEFINED 5 5 5 5.0 5.0 NOT DEFINED 0 -6 -6 -6.0 -6.0 NOT DEFINED 9 9 9 9.0 9.0 NOT DEFINED 0 -10 -10 -10.0 -10.0 NOT DEFINED 98 98 98 98.0 98.0 Data values after deleting column 6: first string 1 1 1.0 1.0 second string 2 2 2.0 2.0 NOT DEFINED 0 0 0.0 0.0 NOT DEFINED 0 0 0.0 0.0 NOT DEFINED 0 0 0.0 0.0 3 3 3.0 3.0 NOT DEFINED 0 -4 -4.0 -4.0 NOT DEFINED 5 5 5.0 5.0 NOT DEFINED 0 -6 -6.0 -6.0 NOT DEFINED 9 9 9.0 9.0 NOT DEFINED 0 -10 -10.0 -10.0 NOT DEFINED 98 98 98.0 98.0 Data values after inserting column 8: first string 1 1 1.0 1.0 0 second string 2 2 2.0 2.0 0 NOT DEFINED 0 0 0.0 0.0 0 NOT DEFINED 0 0 0.0 0.0 0 NOT DEFINED 0 0 0.0 0.0 0 3 3 3.0 3.0 0 NOT DEFINED 0 -4 -4.0 -4.0 0 NOT DEFINED 5 5 5.0 5.0 0 NOT DEFINED 0 -6 -6.0 -6.0 0 NOT DEFINED 9 9 9.0 9.0 0 NOT DEFINED 0 -10 -10.0 -10.0 0 NOT DEFINED 98 98 98.0 98.0 0 Values after setting 1st 10 elements in column 8 = null: first string 1 1 1.0 1.0 98 second string 2 2 2.0 2.0 98 NOT DEFINED 0 0 0.0 0.0 98 NOT DEFINED 0 0 0.0 0.0 98 NOT DEFINED 0 0 0.0 0.0 98 3 3 3.0 3.0 98 NOT DEFINED 0 -4 -4.0 -4.0 98 NOT DEFINED 5 5 5.0 5.0 98 NOT DEFINED 0 -6 -6.0 -6.0 98 NOT DEFINED 9 9 9.0 9.0 98 NOT DEFINED 0 -10 -10.0 -10.0 0 NOT DEFINED 98 98 98.0 98.0 0 Create temporary file: ffinit status = 0 Create null primary array: ffiimg status = 0 Create binary table with 0 columns: ffibin status = 0 copy column, ffcpcl status = 0 copy column, ffcpcl status = 0 copy column, ffcpcl status = 0 copy column, ffcpcl status = 0 copy column, ffcpcl status = 0 copy column, ffcpcl status = 0 copy column, ffcpcl status = 0 Delete the tmp file: ffdelt status = 0 ffibin status = 0 HDU number = 2 0 1000 10000 33000 66000 -999 0 1000 10000 32768 65535 -999 0 1000 10000 32800 65500 -999 0 1 10 33 66 -999 -32768 -31768 -22768 0 32767 -999 -1 9 99 327 654 -999 Create image extension: ffiimg status = 0 HDU number = 3 Wrote whole 2D array: ffp2di status = 0 Read whole 2D array: ffg2di status = 0 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 0 0 0 0 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 0 0 0 0 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 0 0 0 0 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 0 0 0 0 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 0 0 0 0 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 0 0 0 0 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 0 0 0 0 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 0 0 0 0 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 0 0 0 0 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 0 0 0 0 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 0 0 0 0 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 0 0 0 0 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 0 0 0 0 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 0 0 0 0 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 0 0 0 0 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 0 0 0 0 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 0 0 0 0 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 0 0 0 0 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 0 0 0 0 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 0 0 0 0 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 0 0 0 0 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 0 0 0 0 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 0 0 0 0 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 0 0 0 0 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Wrote subset 2D array: ffpssi status = 0 Read whole 2D array: ffg2di status = 0 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 0 0 0 0 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 0 0 0 0 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 0 0 0 0 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 0 0 0 0 40 41 42 43 0 -1 -2 -3 -4 -5 -6 -7 -8 -9 54 0 0 0 0 50 51 52 53 -10 -11 -12 -13 -14 -15 -16 -17 -18 -19 64 0 0 0 0 60 61 62 63 -20 -21 -22 -23 -24 -25 -26 -27 -28 -29 74 0 0 0 0 70 71 72 73 -30 -31 -32 -33 -34 -35 -36 -37 -38 -39 84 0 0 0 0 80 81 82 83 -40 -41 -42 -43 -44 -45 -46 -47 -48 -49 94 0 0 0 0 90 91 92 93 -50 -51 -52 -53 -54 -55 -56 -57 -58 -59 104 0 0 0 0 100 101 102 103 -60 -61 -62 -63 -64 -65 -66 -67 -68 -69 114 0 0 0 0 110 111 112 113 -70 -71 -72 -73 -74 -75 -76 -77 -78 -79 124 0 0 0 0 120 121 122 123 -80 -81 -82 -83 -84 -85 -86 -87 -88 -89 134 0 0 0 0 130 131 132 133 -90 -91 -92 -93 -94 -95 -96 -97 -98 -99 144 0 0 0 0 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 0 0 0 0 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 0 0 0 0 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 0 0 0 0 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 0 0 0 0 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 0 0 0 0 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 0 0 0 0 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 0 0 0 0 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 0 0 0 0 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 0 0 0 0 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 0 0 0 0 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Read subset of 2D array: ffgsvi status = 0 41 43 -1 -3 -5 71 73 -31 -33 -35 Create image extension: ffiimg status = 0 HDU number = 4 Create temporary file: ffinit status = 0 Copy image extension to primary array of tmp file. ffcopy status = 0 SIMPLE = T / file does conform to FITS standard BITPIX = 16 / number of bits per data pixel NAXIS = 2 / number of data axes NAXIS1 = 15 / length of data axis 1 NAXIS2 = 25 / length of data axis 2 EXTEND = T / FITS dataset may contain extensions Delete the tmp file: ffdelt status = 0 Delete the image extension; hdutype, status = 1 0 HDU number = 4 ffcrhd status = 0 Variable length arrays: ffphbn status = 0 ffpcl_ status = 0 PCOUNT = 4446 HDU number = 6 A 0 L 0 0 X 0 0 B 1 0 I 1 0 J 1 0 E 1 0 D 1 0 Column 8 repeat and offset = 1 14 A ab 0 L 0 1 0 X 0 1 0 B 99 2 0 I 99 2 0 J 99 2 0 E 99 2 0 D 99 2 0 Column 8 repeat and offset = 2 49 A abc 0 L 0 0 0 0 X 0 1 0 0 B 1 99 3 0 I 1 99 3 0 J 1 99 3 0 E 1 99 3 0 D 1 99 3 0 Column 8 repeat and offset = 3 105 A abcd 0 L 0 1 0 0 0 X 0 1 0 0 0 B 1 2 99 4 0 I 1 2 99 4 0 J 1 2 99 4 0 E 1 2 99 4 0 D 1 2 99 4 0 Column 8 repeat and offset = 4 182 A abcde 0 L 0 1 0 0 1 0 X 0 1 0 0 1 0 B 1 2 3 99 5 0 I 1 2 3 99 5 0 J 1 2 3 99 5 0 E 1 2 3 99 5 0 D 1 2 3 99 5 0 Column 8 repeat and offset = 5 280 A abcdef 0 L 0 1 0 0 0 1 0 X 0 1 0 0 1 1 0 B 1 2 3 4 99 6 0 I 1 2 3 4 99 6 0 J 1 2 3 4 99 6 0 E 1 2 3 4 99 6 0 D 1 2 3 4 99 6 0 Column 8 repeat and offset = 6 399 A abcdefg 0 L 0 1 0 0 1 0 0 0 X 0 1 0 0 1 1 0 0 B 1 2 3 4 5 99 7 0 I 1 2 3 4 5 99 7 0 J 1 2 3 4 5 99 7 0 E 1 2 3 4 5 99 7 0 D 1 2 3 4 5 99 7 0 Column 8 repeat and offset = 7 539 A abcdefgh 0 L 0 1 0 0 1 1 0 0 0 X 0 1 0 0 1 1 0 0 0 B 1 2 3 4 5 6 99 8 0 I 1 2 3 4 5 6 99 8 0 J 1 2 3 4 5 6 99 8 0 E 1 2 3 4 5 6 99 8 0 D 1 2 3 4 5 6 99 8 0 Column 8 repeat and offset = 8 700 A abcdefghi 0 L 0 1 0 0 1 1 0 0 0 0 X 0 1 0 0 1 1 0 0 0 0 B 1 2 3 4 5 6 7 99 9 0 I 1 2 3 4 5 6 7 99 9 0 J 1 2 3 4 5 6 7 99 9 0 E 1 2 3 4 5 6 7 99 9 0 D 1 2 3 4 5 6 7 99 9 0 Column 8 repeat and offset = 9 883 A abcdefghij 0 L 0 1 0 0 1 1 0 0 0 1 0 X 0 1 0 0 1 1 0 0 0 1 0 B 1 2 3 4 5 6 7 8 99 10 0 I 1 2 3 4 5 6 7 8 99 10 0 J 1 2 3 4 5 6 7 8 99 10 0 E 1 2 3 4 5 6 7 8 99 10 0 D 1 2 3 4 5 6 7 8 99 10 0 Column 8 repeat and offset = 10 1087 A abcdefghijk 0 L 0 1 0 0 1 1 0 0 0 0 1 0 X 0 1 0 0 1 1 0 0 0 1 1 0 B 1 2 3 4 5 6 7 8 9 99 11 0 I 1 2 3 4 5 6 7 8 9 99 11 0 J 1 2 3 4 5 6 7 8 9 99 11 0 E 1 2 3 4 5 6 7 8 9 99 11 0 D 1 2 3 4 5 6 7 8 9 99 11 0 Column 8 repeat and offset = 11 1312 A abcdefghijkl 0 L 0 1 0 0 1 1 0 0 0 1 0 1 0 X 0 1 0 0 1 1 0 0 0 1 1 1 0 B 1 2 3 4 5 6 7 8 9 10 99 12 0 I 1 2 3 4 5 6 7 8 9 10 99 12 0 J 1 2 3 4 5 6 7 8 9 10 99 12 0 E 1 2 3 4 5 6 7 8 9 10 99 12 0 D 1 2 3 4 5 6 7 8 9 10 99 12 0 Column 8 repeat and offset = 12 1558 A abcdefghijklm 0 L 0 1 0 0 1 1 0 0 0 1 1 0 0 0 X 0 1 0 0 1 1 0 0 0 1 1 1 0 0 B 1 2 3 4 5 6 7 8 9 10 11 99 13 0 I 1 2 3 4 5 6 7 8 9 10 11 99 13 0 J 1 2 3 4 5 6 7 8 9 10 11 99 13 0 E 1 2 3 4 5 6 7 8 9 10 11 99 13 0 D 1 2 3 4 5 6 7 8 9 10 11 99 13 0 Column 8 repeat and offset = 13 1825 A abcdefghijklmn 0 L 0 1 0 0 1 1 0 0 0 1 1 1 0 0 0 X 0 1 0 0 1 1 0 0 0 1 1 1 0 0 0 B 1 2 3 4 5 6 7 8 9 10 11 12 99 14 0 I 1 2 3 4 5 6 7 8 9 10 11 12 99 14 0 J 1 2 3 4 5 6 7 8 9 10 11 12 99 14 0 E 1 2 3 4 5 6 7 8 9 10 11 12 99 14 0 D 1 2 3 4 5 6 7 8 9 10 11 12 99 14 0 Column 8 repeat and offset = 14 2113 A abcdefghijklmno 0 L 0 1 0 0 1 1 0 0 0 1 1 1 0 0 0 0 X 0 1 0 0 1 1 0 0 0 1 1 1 0 0 0 0 B 1 2 3 4 5 6 7 8 9 10 11 12 13 99 15 0 I 1 2 3 4 5 6 7 8 9 10 11 12 13 99 15 0 J 1 2 3 4 5 6 7 8 9 10 11 12 13 99 15 0 E 1 2 3 4 5 6 7 8 9 10 11 12 13 99 15 0 D 1 2 3 4 5 6 7 8 9 10 11 12 13 99 15 0 Column 8 repeat and offset = 15 2422 A abcdefghijklmnop 0 L 0 1 0 0 1 1 0 0 0 1 1 1 0 0 0 0 0 X 0 1 0 0 1 1 0 0 0 1 1 1 0 0 0 0 0 B 1 2 3 4 5 6 7 8 9 10 11 12 13 14 99 16 0 I 1 2 3 4 5 6 7 8 9 10 11 12 13 14 99 16 0 J 1 2 3 4 5 6 7 8 9 10 11 12 13 14 99 16 0 E 1 2 3 4 5 6 7 8 9 10 11 12 13 14 99 16 0 D 1 2 3 4 5 6 7 8 9 10 11 12 13 14 99 16 0 Column 8 repeat and offset = 16 2752 A abcdefghijklmnopq 0 L 0 1 0 0 1 1 0 0 0 1 1 1 0 0 0 0 1 0 X 0 1 0 0 1 1 0 0 0 1 1 1 0 0 0 0 1 0 B 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 99 17 0 I 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 99 17 0 J 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 99 17 0 E 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 99 17 0 D 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 99 17 0 Column 8 repeat and offset = 17 3104 A abcdefghijklmnopqr 0 L 0 1 0 0 1 1 0 0 0 1 1 1 0 0 0 0 0 1 0 X 0 1 0 0 1 1 0 0 0 1 1 1 0 0 0 0 1 1 0 B 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 99 18 0 I 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 99 18 0 J 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 99 18 0 E 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 99 18 0 D 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 99 18 0 Column 8 repeat and offset = 18 3477 A abcdefghijklmnopqrs 0 L 0 1 0 0 1 1 0 0 0 1 1 1 0 0 0 0 1 0 1 0 X 0 1 0 0 1 1 0 0 0 1 1 1 0 0 0 0 1 1 1 0 B 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 99 19 0 I 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 99 19 0 J 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 99 19 0 E 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 99 19 0 D 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 99 19 0 Column 8 repeat and offset = 19 3871 A abcdefghijklmnopqrst 0 L 0 1 0 0 1 1 0 0 0 1 1 1 0 0 0 0 1 1 0 1 0 X 0 1 0 0 1 1 0 0 0 1 1 1 0 0 0 0 1 1 1 1 0 B 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 99 20 0 I 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 99 20 0 J 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 99 20 0 E 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 99 20 0 D 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 99 20 0 Column 8 repeat and offset = 20 4286 ffcrim status = 0 ffppr status = 0 Image values written with ffppr and read with ffgpv: 0 2 4 6 8 10 12 14 16 18 20 22 24 26 0 (byte) 0 2 4 6 8 10 12 14 16 18 20 22 24 26 0 (short) 0 2 4 6 8 10 12 14 16 18 20 22 24 26 0 (int) 0 2 4 6 8 10 12 14 16 18 20 22 24 26 0 (long) 0 2 4 6 8 10 12 14 16 18 20 22 24 26 0 (float) 0 2 4 6 8 10 12 14 16 18 20 22 24 26 0 (double) Wrote WCS keywords status = 0 Read WCS keywords with ffgics status = 0 CRVAL1, CRVAL2 = 45.830000000000, 63.570000000000 CRPIX1, CRPIX2 = 256.000000000000, 257.000000000000 CDELT1, CDELT2 = -0.002777770000, 0.002777770000 Rotation = 0.000, CTYPE = -TAN Calculated sky coordinate with ffwldp status = 0 Pixels ( 0.5000, 0.5000) --> ( 47.385204, 62.848968) Sky Calculated pixel coordinate with ffxypx status = 0 Sky ( 47.385204, 62.848968) --> ( 0.5000, 0.5000) Pixels ffcrtb status = 0 ffpcl status = 0 Column values written with ffpcl and read with ffgcl: 0 3 6 9 12 15 18 21 24 27 0 (byte) 0 3 6 9 12 15 18 21 24 27 0 (short) 0 3 6 9 12 15 18 21 24 27 0 (int) 0 3 6 9 12 15 18 21 24 27 0 (long) 0 3 6 9 12 15 18 21 24 27 0 (float) 0 3 6 9 12 15 18 21 24 27 0 (double) Repeatedly move to the 1st 4 HDUs of the file: 12343123431234312343123431234312343123431234312343 Move to extensions by name and version number: (ffmnhd) Test-BINTABLE, 1 = hdu 5, 0 Test-BINTABLE, 3 = hdu 2, 0 Test-BINTABLE, 4 = hdu 6, 0 Test-ASCII, 2 = hdu 4, 0 new_table, 5 = hdu 8, 0 Test-BINTABLE, 0 = hdu 2, 0 Test-BINTABLE, 17 = hdu 2, 301 (expect a 301 error status here) Total number of HDUs in the file = 8 Encode checksum: 1234567890 -> dCW2fBU0dBU0dBU0 Decode checksum: dCW2fBU0dBU0dBU0 -> 1234567890 DATASUM = '475248536' ffgcks data checksum, status = 475248536, 0 ffvcks datastatus, hdustatus, status = 1 1 0 ffupck status = 0 DATASUM = '475248536' ffvcks datastatus, hdustatus, status = 1 1 0 ffclos status = 0 Normally, there should be 8 error messages on the stack all regarding 'numerical overflows': Numerical overflow during type conversion while writing FITS data. Numerical overflow during type conversion while writing FITS data. Numerical overflow during type conversion while writing FITS data. Numerical overflow during type conversion while writing FITS data. Numerical overflow during type conversion while writing FITS data. Numerical overflow during type conversion while writing FITS data. Numerical overflow during type conversion while writing FITS data. Numerical overflow during type conversion while writing FITS data. Status = 0: OK - no error healpy-1.8.1/cfitsio/config.guess0000755000175000017530000012776412272000775017415 0ustar zoncaplanck00000000000000#! /bin/sh # Attempt to guess a canonical system name. # Copyright (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999, # 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010 # Free Software Foundation, Inc. timestamp='2010-08-21' # This file is free software; you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU # General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; if not, write to the Free Software # Foundation, Inc., 51 Franklin Street - Fifth Floor, Boston, MA # 02110-1301, USA. # # As a special exception to the GNU General Public License, if you # distribute this file as part of a program that contains a # configuration script generated by Autoconf, you may include it under # the same distribution terms that you use for the rest of that program. # Originally written by Per Bothner. Please send patches (context # diff format) to and include a ChangeLog # entry. # # This script attempts to guess a canonical system name similar to # config.sub. If it succeeds, it prints the system name on stdout, and # exits with 0. Otherwise, it exits with 1. # # You can get the latest version of this script from: # http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.guess;hb=HEAD me=`echo "$0" | sed -e 's,.*/,,'` usage="\ Usage: $0 [OPTION] Output the configuration name of the system \`$me' is run on. Operation modes: -h, --help print this help, then exit -t, --time-stamp print date of last modification, then exit -v, --version print version number, then exit Report bugs and patches to ." version="\ GNU config.guess ($timestamp) Originally written by Per Bothner. Copyright (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE." help=" Try \`$me --help' for more information." # Parse command line while test $# -gt 0 ; do case $1 in --time-stamp | --time* | -t ) echo "$timestamp" ; exit ;; --version | -v ) echo "$version" ; exit ;; --help | --h* | -h ) echo "$usage"; exit ;; -- ) # Stop option processing shift; break ;; - ) # Use stdin as input. break ;; -* ) echo "$me: invalid option $1$help" >&2 exit 1 ;; * ) break ;; esac done if test $# != 0; then echo "$me: too many arguments$help" >&2 exit 1 fi trap 'exit 1' HUP INT TERM # CC_FOR_BUILD -- compiler used by this script. Note that the use of a # compiler to aid in system detection is discouraged as it requires # temporary files to be created and, as you can see below, it is a # headache to deal with in a portable fashion. # Historically, `CC_FOR_BUILD' used to be named `HOST_CC'. We still # use `HOST_CC' if defined, but it is deprecated. # Portable tmp directory creation inspired by the Autoconf team. set_cc_for_build=' trap "exitcode=\$?; (rm -f \$tmpfiles 2>/dev/null; rmdir \$tmp 2>/dev/null) && exit \$exitcode" 0 ; trap "rm -f \$tmpfiles 2>/dev/null; rmdir \$tmp 2>/dev/null; exit 1" HUP INT PIPE TERM ; : ${TMPDIR=/tmp} ; { tmp=`(umask 077 && mktemp -d "$TMPDIR/cgXXXXXX") 2>/dev/null` && test -n "$tmp" && test -d "$tmp" ; } || { test -n "$RANDOM" && tmp=$TMPDIR/cg$$-$RANDOM && (umask 077 && mkdir $tmp) ; } || { tmp=$TMPDIR/cg-$$ && (umask 077 && mkdir $tmp) && echo "Warning: creating insecure temp directory" >&2 ; } || { echo "$me: cannot create a temporary directory in $TMPDIR" >&2 ; exit 1 ; } ; dummy=$tmp/dummy ; tmpfiles="$dummy.c $dummy.o $dummy.rel $dummy" ; case $CC_FOR_BUILD,$HOST_CC,$CC in ,,) echo "int x;" > $dummy.c ; for c in cc gcc c89 c99 ; do if ($c -c -o $dummy.o $dummy.c) >/dev/null 2>&1 ; then CC_FOR_BUILD="$c"; break ; fi ; done ; if test x"$CC_FOR_BUILD" = x ; then CC_FOR_BUILD=no_compiler_found ; fi ;; ,,*) CC_FOR_BUILD=$CC ;; ,*,*) CC_FOR_BUILD=$HOST_CC ;; esac ; set_cc_for_build= ;' # This is needed to find uname on a Pyramid OSx when run in the BSD universe. # (ghazi@noc.rutgers.edu 1994-08-24) if (test -f /.attbin/uname) >/dev/null 2>&1 ; then PATH=$PATH:/.attbin ; export PATH fi UNAME_MACHINE=`(uname -m) 2>/dev/null` || UNAME_MACHINE=unknown UNAME_RELEASE=`(uname -r) 2>/dev/null` || UNAME_RELEASE=unknown UNAME_SYSTEM=`(uname -s) 2>/dev/null` || UNAME_SYSTEM=unknown UNAME_VERSION=`(uname -v) 2>/dev/null` || UNAME_VERSION=unknown # Note: order is significant - the case branches are not exclusive. case "${UNAME_MACHINE}:${UNAME_SYSTEM}:${UNAME_RELEASE}:${UNAME_VERSION}" in *:NetBSD:*:*) # NetBSD (nbsd) targets should (where applicable) match one or # more of the tupples: *-*-netbsdelf*, *-*-netbsdaout*, # *-*-netbsdecoff* and *-*-netbsd*. For targets that recently # switched to ELF, *-*-netbsd* would select the old # object file format. This provides both forward # compatibility and a consistent mechanism for selecting the # object file format. # # Note: NetBSD doesn't particularly care about the vendor # portion of the name. We always set it to "unknown". sysctl="sysctl -n hw.machine_arch" UNAME_MACHINE_ARCH=`(/sbin/$sysctl 2>/dev/null || \ /usr/sbin/$sysctl 2>/dev/null || echo unknown)` case "${UNAME_MACHINE_ARCH}" in armeb) machine=armeb-unknown ;; arm*) machine=arm-unknown ;; sh3el) machine=shl-unknown ;; sh3eb) machine=sh-unknown ;; sh5el) machine=sh5le-unknown ;; *) machine=${UNAME_MACHINE_ARCH}-unknown ;; esac # The Operating System including object format, if it has switched # to ELF recently, or will in the future. case "${UNAME_MACHINE_ARCH}" in arm*|i386|m68k|ns32k|sh3*|sparc|vax) eval $set_cc_for_build if echo __ELF__ | $CC_FOR_BUILD -E - 2>/dev/null \ | grep -q __ELF__ then # Once all utilities can be ECOFF (netbsdecoff) or a.out (netbsdaout). # Return netbsd for either. FIX? os=netbsd else os=netbsdelf fi ;; *) os=netbsd ;; esac # The OS release # Debian GNU/NetBSD machines have a different userland, and # thus, need a distinct triplet. However, they do not need # kernel version information, so it can be replaced with a # suitable tag, in the style of linux-gnu. case "${UNAME_VERSION}" in Debian*) release='-gnu' ;; *) release=`echo ${UNAME_RELEASE}|sed -e 's/[-_].*/\./'` ;; esac # Since CPU_TYPE-MANUFACTURER-KERNEL-OPERATING_SYSTEM: # contains redundant information, the shorter form: # CPU_TYPE-MANUFACTURER-OPERATING_SYSTEM is used. echo "${machine}-${os}${release}" exit ;; *:OpenBSD:*:*) UNAME_MACHINE_ARCH=`arch | sed 's/OpenBSD.//'` echo ${UNAME_MACHINE_ARCH}-unknown-openbsd${UNAME_RELEASE} exit ;; *:ekkoBSD:*:*) echo ${UNAME_MACHINE}-unknown-ekkobsd${UNAME_RELEASE} exit ;; *:SolidBSD:*:*) echo ${UNAME_MACHINE}-unknown-solidbsd${UNAME_RELEASE} exit ;; macppc:MirBSD:*:*) echo powerpc-unknown-mirbsd${UNAME_RELEASE} exit ;; *:MirBSD:*:*) echo ${UNAME_MACHINE}-unknown-mirbsd${UNAME_RELEASE} exit ;; alpha:OSF1:*:*) case $UNAME_RELEASE in *4.0) UNAME_RELEASE=`/usr/sbin/sizer -v | awk '{print $3}'` ;; *5.*) UNAME_RELEASE=`/usr/sbin/sizer -v | awk '{print $4}'` ;; esac # According to Compaq, /usr/sbin/psrinfo has been available on # OSF/1 and Tru64 systems produced since 1995. I hope that # covers most systems running today. This code pipes the CPU # types through head -n 1, so we only detect the type of CPU 0. ALPHA_CPU_TYPE=`/usr/sbin/psrinfo -v | sed -n -e 's/^ The alpha \(.*\) processor.*$/\1/p' | head -n 1` case "$ALPHA_CPU_TYPE" in "EV4 (21064)") UNAME_MACHINE="alpha" ;; "EV4.5 (21064)") UNAME_MACHINE="alpha" ;; "LCA4 (21066/21068)") UNAME_MACHINE="alpha" ;; "EV5 (21164)") UNAME_MACHINE="alphaev5" ;; "EV5.6 (21164A)") UNAME_MACHINE="alphaev56" ;; "EV5.6 (21164PC)") UNAME_MACHINE="alphapca56" ;; "EV5.7 (21164PC)") UNAME_MACHINE="alphapca57" ;; "EV6 (21264)") UNAME_MACHINE="alphaev6" ;; "EV6.7 (21264A)") UNAME_MACHINE="alphaev67" ;; "EV6.8CB (21264C)") UNAME_MACHINE="alphaev68" ;; "EV6.8AL (21264B)") UNAME_MACHINE="alphaev68" ;; "EV6.8CX (21264D)") UNAME_MACHINE="alphaev68" ;; "EV6.9A (21264/EV69A)") UNAME_MACHINE="alphaev69" ;; "EV7 (21364)") UNAME_MACHINE="alphaev7" ;; "EV7.9 (21364A)") UNAME_MACHINE="alphaev79" ;; esac # A Pn.n version is a patched version. # A Vn.n version is a released version. # A Tn.n version is a released field test version. # A Xn.n version is an unreleased experimental baselevel. # 1.2 uses "1.2" for uname -r. echo ${UNAME_MACHINE}-dec-osf`echo ${UNAME_RELEASE} | sed -e 's/^[PVTX]//' | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz'` exit ;; Alpha\ *:Windows_NT*:*) # How do we know it's Interix rather than the generic POSIX subsystem? # Should we change UNAME_MACHINE based on the output of uname instead # of the specific Alpha model? echo alpha-pc-interix exit ;; 21064:Windows_NT:50:3) echo alpha-dec-winnt3.5 exit ;; Amiga*:UNIX_System_V:4.0:*) echo m68k-unknown-sysv4 exit ;; *:[Aa]miga[Oo][Ss]:*:*) echo ${UNAME_MACHINE}-unknown-amigaos exit ;; *:[Mm]orph[Oo][Ss]:*:*) echo ${UNAME_MACHINE}-unknown-morphos exit ;; *:OS/390:*:*) echo i370-ibm-openedition exit ;; *:z/VM:*:*) echo s390-ibm-zvmoe exit ;; *:OS400:*:*) echo powerpc-ibm-os400 exit ;; arm:RISC*:1.[012]*:*|arm:riscix:1.[012]*:*) echo arm-acorn-riscix${UNAME_RELEASE} exit ;; arm:riscos:*:*|arm:RISCOS:*:*) echo arm-unknown-riscos exit ;; SR2?01:HI-UX/MPP:*:* | SR8000:HI-UX/MPP:*:*) echo hppa1.1-hitachi-hiuxmpp exit ;; Pyramid*:OSx*:*:* | MIS*:OSx*:*:* | MIS*:SMP_DC-OSx*:*:*) # akee@wpdis03.wpafb.af.mil (Earle F. Ake) contributed MIS and NILE. if test "`(/bin/universe) 2>/dev/null`" = att ; then echo pyramid-pyramid-sysv3 else echo pyramid-pyramid-bsd fi exit ;; NILE*:*:*:dcosx) echo pyramid-pyramid-svr4 exit ;; DRS?6000:unix:4.0:6*) echo sparc-icl-nx6 exit ;; DRS?6000:UNIX_SV:4.2*:7* | DRS?6000:isis:4.2*:7*) case `/usr/bin/uname -p` in sparc) echo sparc-icl-nx7; exit ;; esac ;; s390x:SunOS:*:*) echo ${UNAME_MACHINE}-ibm-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'` exit ;; sun4H:SunOS:5.*:*) echo sparc-hal-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'` exit ;; sun4*:SunOS:5.*:* | tadpole*:SunOS:5.*:*) echo sparc-sun-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'` exit ;; i86pc:AuroraUX:5.*:* | i86xen:AuroraUX:5.*:*) echo i386-pc-auroraux${UNAME_RELEASE} exit ;; i86pc:SunOS:5.*:* | i86xen:SunOS:5.*:*) eval $set_cc_for_build SUN_ARCH="i386" # If there is a compiler, see if it is configured for 64-bit objects. # Note that the Sun cc does not turn __LP64__ into 1 like gcc does. # This test works for both compilers. if [ "$CC_FOR_BUILD" != 'no_compiler_found' ]; then if (echo '#ifdef __amd64'; echo IS_64BIT_ARCH; echo '#endif') | \ (CCOPTS= $CC_FOR_BUILD -E - 2>/dev/null) | \ grep IS_64BIT_ARCH >/dev/null then SUN_ARCH="x86_64" fi fi echo ${SUN_ARCH}-pc-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'` exit ;; sun4*:SunOS:6*:*) # According to config.sub, this is the proper way to canonicalize # SunOS6. Hard to guess exactly what SunOS6 will be like, but # it's likely to be more like Solaris than SunOS4. echo sparc-sun-solaris3`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'` exit ;; sun4*:SunOS:*:*) case "`/usr/bin/arch -k`" in Series*|S4*) UNAME_RELEASE=`uname -v` ;; esac # Japanese Language versions have a version number like `4.1.3-JL'. echo sparc-sun-sunos`echo ${UNAME_RELEASE}|sed -e 's/-/_/'` exit ;; sun3*:SunOS:*:*) echo m68k-sun-sunos${UNAME_RELEASE} exit ;; sun*:*:4.2BSD:*) UNAME_RELEASE=`(sed 1q /etc/motd | awk '{print substr($5,1,3)}') 2>/dev/null` test "x${UNAME_RELEASE}" = "x" && UNAME_RELEASE=3 case "`/bin/arch`" in sun3) echo m68k-sun-sunos${UNAME_RELEASE} ;; sun4) echo sparc-sun-sunos${UNAME_RELEASE} ;; esac exit ;; aushp:SunOS:*:*) echo sparc-auspex-sunos${UNAME_RELEASE} exit ;; # The situation for MiNT is a little confusing. The machine name # can be virtually everything (everything which is not # "atarist" or "atariste" at least should have a processor # > m68000). The system name ranges from "MiNT" over "FreeMiNT" # to the lowercase version "mint" (or "freemint"). Finally # the system name "TOS" denotes a system which is actually not # MiNT. But MiNT is downward compatible to TOS, so this should # be no problem. atarist[e]:*MiNT:*:* | atarist[e]:*mint:*:* | atarist[e]:*TOS:*:*) echo m68k-atari-mint${UNAME_RELEASE} exit ;; atari*:*MiNT:*:* | atari*:*mint:*:* | atarist[e]:*TOS:*:*) echo m68k-atari-mint${UNAME_RELEASE} exit ;; *falcon*:*MiNT:*:* | *falcon*:*mint:*:* | *falcon*:*TOS:*:*) echo m68k-atari-mint${UNAME_RELEASE} exit ;; milan*:*MiNT:*:* | milan*:*mint:*:* | *milan*:*TOS:*:*) echo m68k-milan-mint${UNAME_RELEASE} exit ;; hades*:*MiNT:*:* | hades*:*mint:*:* | *hades*:*TOS:*:*) echo m68k-hades-mint${UNAME_RELEASE} exit ;; *:*MiNT:*:* | *:*mint:*:* | *:*TOS:*:*) echo m68k-unknown-mint${UNAME_RELEASE} exit ;; m68k:machten:*:*) echo m68k-apple-machten${UNAME_RELEASE} exit ;; powerpc:machten:*:*) echo powerpc-apple-machten${UNAME_RELEASE} exit ;; RISC*:Mach:*:*) echo mips-dec-mach_bsd4.3 exit ;; RISC*:ULTRIX:*:*) echo mips-dec-ultrix${UNAME_RELEASE} exit ;; VAX*:ULTRIX*:*:*) echo vax-dec-ultrix${UNAME_RELEASE} exit ;; 2020:CLIX:*:* | 2430:CLIX:*:*) echo clipper-intergraph-clix${UNAME_RELEASE} exit ;; mips:*:*:UMIPS | mips:*:*:RISCos) eval $set_cc_for_build sed 's/^ //' << EOF >$dummy.c #ifdef __cplusplus #include /* for printf() prototype */ int main (int argc, char *argv[]) { #else int main (argc, argv) int argc; char *argv[]; { #endif #if defined (host_mips) && defined (MIPSEB) #if defined (SYSTYPE_SYSV) printf ("mips-mips-riscos%ssysv\n", argv[1]); exit (0); #endif #if defined (SYSTYPE_SVR4) printf ("mips-mips-riscos%ssvr4\n", argv[1]); exit (0); #endif #if defined (SYSTYPE_BSD43) || defined(SYSTYPE_BSD) printf ("mips-mips-riscos%sbsd\n", argv[1]); exit (0); #endif #endif exit (-1); } EOF $CC_FOR_BUILD -o $dummy $dummy.c && dummyarg=`echo "${UNAME_RELEASE}" | sed -n 's/\([0-9]*\).*/\1/p'` && SYSTEM_NAME=`$dummy $dummyarg` && { echo "$SYSTEM_NAME"; exit; } echo mips-mips-riscos${UNAME_RELEASE} exit ;; Motorola:PowerMAX_OS:*:*) echo powerpc-motorola-powermax exit ;; Motorola:*:4.3:PL8-*) echo powerpc-harris-powermax exit ;; Night_Hawk:*:*:PowerMAX_OS | Synergy:PowerMAX_OS:*:*) echo powerpc-harris-powermax exit ;; Night_Hawk:Power_UNIX:*:*) echo powerpc-harris-powerunix exit ;; m88k:CX/UX:7*:*) echo m88k-harris-cxux7 exit ;; m88k:*:4*:R4*) echo m88k-motorola-sysv4 exit ;; m88k:*:3*:R3*) echo m88k-motorola-sysv3 exit ;; AViiON:dgux:*:*) # DG/UX returns AViiON for all architectures UNAME_PROCESSOR=`/usr/bin/uname -p` if [ $UNAME_PROCESSOR = mc88100 ] || [ $UNAME_PROCESSOR = mc88110 ] then if [ ${TARGET_BINARY_INTERFACE}x = m88kdguxelfx ] || \ [ ${TARGET_BINARY_INTERFACE}x = x ] then echo m88k-dg-dgux${UNAME_RELEASE} else echo m88k-dg-dguxbcs${UNAME_RELEASE} fi else echo i586-dg-dgux${UNAME_RELEASE} fi exit ;; M88*:DolphinOS:*:*) # DolphinOS (SVR3) echo m88k-dolphin-sysv3 exit ;; M88*:*:R3*:*) # Delta 88k system running SVR3 echo m88k-motorola-sysv3 exit ;; XD88*:*:*:*) # Tektronix XD88 system running UTekV (SVR3) echo m88k-tektronix-sysv3 exit ;; Tek43[0-9][0-9]:UTek:*:*) # Tektronix 4300 system running UTek (BSD) echo m68k-tektronix-bsd exit ;; *:IRIX*:*:*) echo mips-sgi-irix`echo ${UNAME_RELEASE}|sed -e 's/-/_/g'` exit ;; ????????:AIX?:[12].1:2) # AIX 2.2.1 or AIX 2.1.1 is RT/PC AIX. echo romp-ibm-aix # uname -m gives an 8 hex-code CPU id exit ;; # Note that: echo "'`uname -s`'" gives 'AIX ' i*86:AIX:*:*) echo i386-ibm-aix exit ;; ia64:AIX:*:*) if [ -x /usr/bin/oslevel ] ; then IBM_REV=`/usr/bin/oslevel` else IBM_REV=${UNAME_VERSION}.${UNAME_RELEASE} fi echo ${UNAME_MACHINE}-ibm-aix${IBM_REV} exit ;; *:AIX:2:3) if grep bos325 /usr/include/stdio.h >/dev/null 2>&1; then eval $set_cc_for_build sed 's/^ //' << EOF >$dummy.c #include main() { if (!__power_pc()) exit(1); puts("powerpc-ibm-aix3.2.5"); exit(0); } EOF if $CC_FOR_BUILD -o $dummy $dummy.c && SYSTEM_NAME=`$dummy` then echo "$SYSTEM_NAME" else echo rs6000-ibm-aix3.2.5 fi elif grep bos324 /usr/include/stdio.h >/dev/null 2>&1; then echo rs6000-ibm-aix3.2.4 else echo rs6000-ibm-aix3.2 fi exit ;; *:AIX:*:[4567]) IBM_CPU_ID=`/usr/sbin/lsdev -C -c processor -S available | sed 1q | awk '{ print $1 }'` if /usr/sbin/lsattr -El ${IBM_CPU_ID} | grep ' POWER' >/dev/null 2>&1; then IBM_ARCH=rs6000 else IBM_ARCH=powerpc fi if [ -x /usr/bin/oslevel ] ; then IBM_REV=`/usr/bin/oslevel` else IBM_REV=${UNAME_VERSION}.${UNAME_RELEASE} fi echo ${IBM_ARCH}-ibm-aix${IBM_REV} exit ;; *:AIX:*:*) echo rs6000-ibm-aix exit ;; ibmrt:4.4BSD:*|romp-ibm:BSD:*) echo romp-ibm-bsd4.4 exit ;; ibmrt:*BSD:*|romp-ibm:BSD:*) # covers RT/PC BSD and echo romp-ibm-bsd${UNAME_RELEASE} # 4.3 with uname added to exit ;; # report: romp-ibm BSD 4.3 *:BOSX:*:*) echo rs6000-bull-bosx exit ;; DPX/2?00:B.O.S.:*:*) echo m68k-bull-sysv3 exit ;; 9000/[34]??:4.3bsd:1.*:*) echo m68k-hp-bsd exit ;; hp300:4.4BSD:*:* | 9000/[34]??:4.3bsd:2.*:*) echo m68k-hp-bsd4.4 exit ;; 9000/[34678]??:HP-UX:*:*) HPUX_REV=`echo ${UNAME_RELEASE}|sed -e 's/[^.]*.[0B]*//'` case "${UNAME_MACHINE}" in 9000/31? ) HP_ARCH=m68000 ;; 9000/[34]?? ) HP_ARCH=m68k ;; 9000/[678][0-9][0-9]) if [ -x /usr/bin/getconf ]; then sc_cpu_version=`/usr/bin/getconf SC_CPU_VERSION 2>/dev/null` sc_kernel_bits=`/usr/bin/getconf SC_KERNEL_BITS 2>/dev/null` case "${sc_cpu_version}" in 523) HP_ARCH="hppa1.0" ;; # CPU_PA_RISC1_0 528) HP_ARCH="hppa1.1" ;; # CPU_PA_RISC1_1 532) # CPU_PA_RISC2_0 case "${sc_kernel_bits}" in 32) HP_ARCH="hppa2.0n" ;; 64) HP_ARCH="hppa2.0w" ;; '') HP_ARCH="hppa2.0" ;; # HP-UX 10.20 esac ;; esac fi if [ "${HP_ARCH}" = "" ]; then eval $set_cc_for_build sed 's/^ //' << EOF >$dummy.c #define _HPUX_SOURCE #include #include int main () { #if defined(_SC_KERNEL_BITS) long bits = sysconf(_SC_KERNEL_BITS); #endif long cpu = sysconf (_SC_CPU_VERSION); switch (cpu) { case CPU_PA_RISC1_0: puts ("hppa1.0"); break; case CPU_PA_RISC1_1: puts ("hppa1.1"); break; case CPU_PA_RISC2_0: #if defined(_SC_KERNEL_BITS) switch (bits) { case 64: puts ("hppa2.0w"); break; case 32: puts ("hppa2.0n"); break; default: puts ("hppa2.0"); break; } break; #else /* !defined(_SC_KERNEL_BITS) */ puts ("hppa2.0"); break; #endif default: puts ("hppa1.0"); break; } exit (0); } EOF (CCOPTS= $CC_FOR_BUILD -o $dummy $dummy.c 2>/dev/null) && HP_ARCH=`$dummy` test -z "$HP_ARCH" && HP_ARCH=hppa fi ;; esac if [ ${HP_ARCH} = "hppa2.0w" ] then eval $set_cc_for_build # hppa2.0w-hp-hpux* has a 64-bit kernel and a compiler generating # 32-bit code. hppa64-hp-hpux* has the same kernel and a compiler # generating 64-bit code. GNU and HP use different nomenclature: # # $ CC_FOR_BUILD=cc ./config.guess # => hppa2.0w-hp-hpux11.23 # $ CC_FOR_BUILD="cc +DA2.0w" ./config.guess # => hppa64-hp-hpux11.23 if echo __LP64__ | (CCOPTS= $CC_FOR_BUILD -E - 2>/dev/null) | grep -q __LP64__ then HP_ARCH="hppa2.0w" else HP_ARCH="hppa64" fi fi echo ${HP_ARCH}-hp-hpux${HPUX_REV} exit ;; ia64:HP-UX:*:*) HPUX_REV=`echo ${UNAME_RELEASE}|sed -e 's/[^.]*.[0B]*//'` echo ia64-hp-hpux${HPUX_REV} exit ;; 3050*:HI-UX:*:*) eval $set_cc_for_build sed 's/^ //' << EOF >$dummy.c #include int main () { long cpu = sysconf (_SC_CPU_VERSION); /* The order matters, because CPU_IS_HP_MC68K erroneously returns true for CPU_PA_RISC1_0. CPU_IS_PA_RISC returns correct results, however. */ if (CPU_IS_PA_RISC (cpu)) { switch (cpu) { case CPU_PA_RISC1_0: puts ("hppa1.0-hitachi-hiuxwe2"); break; case CPU_PA_RISC1_1: puts ("hppa1.1-hitachi-hiuxwe2"); break; case CPU_PA_RISC2_0: puts ("hppa2.0-hitachi-hiuxwe2"); break; default: puts ("hppa-hitachi-hiuxwe2"); break; } } else if (CPU_IS_HP_MC68K (cpu)) puts ("m68k-hitachi-hiuxwe2"); else puts ("unknown-hitachi-hiuxwe2"); exit (0); } EOF $CC_FOR_BUILD -o $dummy $dummy.c && SYSTEM_NAME=`$dummy` && { echo "$SYSTEM_NAME"; exit; } echo unknown-hitachi-hiuxwe2 exit ;; 9000/7??:4.3bsd:*:* | 9000/8?[79]:4.3bsd:*:* ) echo hppa1.1-hp-bsd exit ;; 9000/8??:4.3bsd:*:*) echo hppa1.0-hp-bsd exit ;; *9??*:MPE/iX:*:* | *3000*:MPE/iX:*:*) echo hppa1.0-hp-mpeix exit ;; hp7??:OSF1:*:* | hp8?[79]:OSF1:*:* ) echo hppa1.1-hp-osf exit ;; hp8??:OSF1:*:*) echo hppa1.0-hp-osf exit ;; i*86:OSF1:*:*) if [ -x /usr/sbin/sysversion ] ; then echo ${UNAME_MACHINE}-unknown-osf1mk else echo ${UNAME_MACHINE}-unknown-osf1 fi exit ;; parisc*:Lites*:*:*) echo hppa1.1-hp-lites exit ;; C1*:ConvexOS:*:* | convex:ConvexOS:C1*:*) echo c1-convex-bsd exit ;; C2*:ConvexOS:*:* | convex:ConvexOS:C2*:*) if getsysinfo -f scalar_acc then echo c32-convex-bsd else echo c2-convex-bsd fi exit ;; C34*:ConvexOS:*:* | convex:ConvexOS:C34*:*) echo c34-convex-bsd exit ;; C38*:ConvexOS:*:* | convex:ConvexOS:C38*:*) echo c38-convex-bsd exit ;; C4*:ConvexOS:*:* | convex:ConvexOS:C4*:*) echo c4-convex-bsd exit ;; CRAY*Y-MP:*:*:*) echo ymp-cray-unicos${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/' exit ;; CRAY*[A-Z]90:*:*:*) echo ${UNAME_MACHINE}-cray-unicos${UNAME_RELEASE} \ | sed -e 's/CRAY.*\([A-Z]90\)/\1/' \ -e y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/ \ -e 's/\.[^.]*$/.X/' exit ;; CRAY*TS:*:*:*) echo t90-cray-unicos${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/' exit ;; CRAY*T3E:*:*:*) echo alphaev5-cray-unicosmk${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/' exit ;; CRAY*SV1:*:*:*) echo sv1-cray-unicos${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/' exit ;; *:UNICOS/mp:*:*) echo craynv-cray-unicosmp${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/' exit ;; F30[01]:UNIX_System_V:*:* | F700:UNIX_System_V:*:*) FUJITSU_PROC=`uname -m | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz'` FUJITSU_SYS=`uname -p | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/\///'` FUJITSU_REL=`echo ${UNAME_RELEASE} | sed -e 's/ /_/'` echo "${FUJITSU_PROC}-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}" exit ;; 5000:UNIX_System_V:4.*:*) FUJITSU_SYS=`uname -p | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/\///'` FUJITSU_REL=`echo ${UNAME_RELEASE} | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/ /_/'` echo "sparc-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}" exit ;; i*86:BSD/386:*:* | i*86:BSD/OS:*:* | *:Ascend\ Embedded/OS:*:*) echo ${UNAME_MACHINE}-pc-bsdi${UNAME_RELEASE} exit ;; sparc*:BSD/OS:*:*) echo sparc-unknown-bsdi${UNAME_RELEASE} exit ;; *:BSD/OS:*:*) echo ${UNAME_MACHINE}-unknown-bsdi${UNAME_RELEASE} exit ;; *:FreeBSD:*:*) case ${UNAME_MACHINE} in pc98) echo i386-unknown-freebsd`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'` ;; amd64) echo x86_64-unknown-freebsd`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'` ;; *) echo ${UNAME_MACHINE}-unknown-freebsd`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'` ;; esac exit ;; i*:CYGWIN*:*) echo ${UNAME_MACHINE}-pc-cygwin exit ;; *:MINGW*:*) echo ${UNAME_MACHINE}-pc-mingw32 exit ;; i*:windows32*:*) # uname -m includes "-pc" on this system. echo ${UNAME_MACHINE}-mingw32 exit ;; i*:PW*:*) echo ${UNAME_MACHINE}-pc-pw32 exit ;; *:Interix*:*) case ${UNAME_MACHINE} in x86) echo i586-pc-interix${UNAME_RELEASE} exit ;; authenticamd | genuineintel | EM64T) echo x86_64-unknown-interix${UNAME_RELEASE} exit ;; IA64) echo ia64-unknown-interix${UNAME_RELEASE} exit ;; esac ;; [345]86:Windows_95:* | [345]86:Windows_98:* | [345]86:Windows_NT:*) echo i${UNAME_MACHINE}-pc-mks exit ;; 8664:Windows_NT:*) echo x86_64-pc-mks exit ;; i*:Windows_NT*:* | Pentium*:Windows_NT*:*) # How do we know it's Interix rather than the generic POSIX subsystem? # It also conflicts with pre-2.0 versions of AT&T UWIN. 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EV67) UNAME_MACHINE=alphaev67 ;; EV68*) UNAME_MACHINE=alphaev68 ;; esac objdump --private-headers /bin/sh | grep -q ld.so.1 if test "$?" = 0 ; then LIBC="libc1" ; else LIBC="" ; fi echo ${UNAME_MACHINE}-unknown-linux-gnu${LIBC} exit ;; arm*:Linux:*:*) eval $set_cc_for_build if echo __ARM_EABI__ | $CC_FOR_BUILD -E - 2>/dev/null \ | grep -q __ARM_EABI__ then echo ${UNAME_MACHINE}-unknown-linux-gnu else echo ${UNAME_MACHINE}-unknown-linux-gnueabi fi exit ;; avr32*:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-gnu exit ;; cris:Linux:*:*) echo cris-axis-linux-gnu exit ;; crisv32:Linux:*:*) echo crisv32-axis-linux-gnu exit ;; frv:Linux:*:*) echo frv-unknown-linux-gnu exit ;; i*86:Linux:*:*) LIBC=gnu eval $set_cc_for_build sed 's/^ //' << EOF >$dummy.c #ifdef __dietlibc__ LIBC=dietlibc #endif EOF eval `$CC_FOR_BUILD -E $dummy.c 2>/dev/null | grep '^LIBC'` echo "${UNAME_MACHINE}-pc-linux-${LIBC}" exit ;; ia64:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-gnu exit ;; m32r*:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-gnu exit ;; m68*:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-gnu exit ;; mips:Linux:*:* | mips64:Linux:*:*) eval $set_cc_for_build sed 's/^ //' << EOF >$dummy.c #undef CPU #undef ${UNAME_MACHINE} #undef ${UNAME_MACHINE}el #if defined(__MIPSEL__) || defined(__MIPSEL) || defined(_MIPSEL) || defined(MIPSEL) CPU=${UNAME_MACHINE}el #else #if defined(__MIPSEB__) || defined(__MIPSEB) || defined(_MIPSEB) || defined(MIPSEB) CPU=${UNAME_MACHINE} #else CPU= #endif #endif EOF eval `$CC_FOR_BUILD -E $dummy.c 2>/dev/null | grep '^CPU'` test x"${CPU}" != x && { echo "${CPU}-unknown-linux-gnu"; exit; } ;; or32:Linux:*:*) echo or32-unknown-linux-gnu exit ;; padre:Linux:*:*) echo sparc-unknown-linux-gnu exit ;; parisc64:Linux:*:* | hppa64:Linux:*:*) echo hppa64-unknown-linux-gnu exit ;; parisc:Linux:*:* | hppa:Linux:*:*) # Look for CPU level case `grep '^cpu[^a-z]*:' /proc/cpuinfo 2>/dev/null | cut -d' ' -f2` in PA7*) echo hppa1.1-unknown-linux-gnu ;; PA8*) echo hppa2.0-unknown-linux-gnu ;; *) echo hppa-unknown-linux-gnu ;; esac exit ;; ppc64:Linux:*:*) echo powerpc64-unknown-linux-gnu exit ;; ppc:Linux:*:*) echo powerpc-unknown-linux-gnu exit ;; s390:Linux:*:* | s390x:Linux:*:*) echo ${UNAME_MACHINE}-ibm-linux exit ;; sh64*:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-gnu exit ;; sh*:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-gnu exit ;; sparc:Linux:*:* | sparc64:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-gnu exit ;; tile*:Linux:*:*) echo ${UNAME_MACHINE}-tilera-linux-gnu exit ;; vax:Linux:*:*) echo ${UNAME_MACHINE}-dec-linux-gnu exit ;; x86_64:Linux:*:*) echo x86_64-unknown-linux-gnu exit ;; xtensa*:Linux:*:*) echo ${UNAME_MACHINE}-unknown-linux-gnu exit ;; i*86:DYNIX/ptx:4*:*) # ptx 4.0 does uname -s correctly, with DYNIX/ptx in there. # earlier versions are messed up and put the nodename in both # sysname and nodename. echo i386-sequent-sysv4 exit ;; i*86:UNIX_SV:4.2MP:2.*) # Unixware is an offshoot of SVR4, but it has its own version # number series starting with 2... # I am not positive that other SVR4 systems won't match this, # I just have to hope. -- rms. # Use sysv4.2uw... so that sysv4* matches it. echo ${UNAME_MACHINE}-pc-sysv4.2uw${UNAME_VERSION} exit ;; i*86:OS/2:*:*) # If we were able to find `uname', then EMX Unix compatibility # is probably installed. echo ${UNAME_MACHINE}-pc-os2-emx exit ;; i*86:XTS-300:*:STOP) echo ${UNAME_MACHINE}-unknown-stop exit ;; i*86:atheos:*:*) echo ${UNAME_MACHINE}-unknown-atheos exit ;; i*86:syllable:*:*) echo ${UNAME_MACHINE}-pc-syllable exit ;; i*86:LynxOS:2.*:* | i*86:LynxOS:3.[01]*:* | i*86:LynxOS:4.[02]*:*) echo i386-unknown-lynxos${UNAME_RELEASE} exit ;; i*86:*DOS:*:*) echo ${UNAME_MACHINE}-pc-msdosdjgpp exit ;; i*86:*:4.*:* | i*86:SYSTEM_V:4.*:*) UNAME_REL=`echo ${UNAME_RELEASE} | sed 's/\/MP$//'` if grep Novell /usr/include/link.h >/dev/null 2>/dev/null; then echo ${UNAME_MACHINE}-univel-sysv${UNAME_REL} else echo ${UNAME_MACHINE}-pc-sysv${UNAME_REL} fi exit ;; i*86:*:5:[678]*) # UnixWare 7.x, OpenUNIX and OpenServer 6. case `/bin/uname -X | grep "^Machine"` in *486*) UNAME_MACHINE=i486 ;; *Pentium) UNAME_MACHINE=i586 ;; *Pent*|*Celeron) UNAME_MACHINE=i686 ;; esac echo ${UNAME_MACHINE}-unknown-sysv${UNAME_RELEASE}${UNAME_SYSTEM}${UNAME_VERSION} exit ;; i*86:*:3.2:*) if test -f /usr/options/cb.name; then UNAME_REL=`sed -n 's/.*Version //p' /dev/null >/dev/null ; then UNAME_REL=`(/bin/uname -X|grep Release|sed -e 's/.*= //')` (/bin/uname -X|grep i80486 >/dev/null) && UNAME_MACHINE=i486 (/bin/uname -X|grep '^Machine.*Pentium' >/dev/null) \ && UNAME_MACHINE=i586 (/bin/uname -X|grep '^Machine.*Pent *II' >/dev/null) \ && UNAME_MACHINE=i686 (/bin/uname -X|grep '^Machine.*Pentium Pro' >/dev/null) \ && UNAME_MACHINE=i686 echo ${UNAME_MACHINE}-pc-sco$UNAME_REL else echo ${UNAME_MACHINE}-pc-sysv32 fi exit ;; pc:*:*:*) # Left here for compatibility: # uname -m prints for DJGPP always 'pc', but it prints nothing about # the processor, so we play safe by assuming i586. # Note: whatever this is, it MUST be the same as what config.sub # prints for the "djgpp" host, or else GDB configury will decide that # this is a cross-build. echo i586-pc-msdosdjgpp exit ;; Intel:Mach:3*:*) echo i386-pc-mach3 exit ;; paragon:*:*:*) echo i860-intel-osf1 exit ;; i860:*:4.*:*) # i860-SVR4 if grep Stardent /usr/include/sys/uadmin.h >/dev/null 2>&1 ; then echo i860-stardent-sysv${UNAME_RELEASE} # Stardent Vistra i860-SVR4 else # Add other i860-SVR4 vendors below as they are discovered. echo i860-unknown-sysv${UNAME_RELEASE} # Unknown i860-SVR4 fi exit ;; mini*:CTIX:SYS*5:*) # "miniframe" echo m68010-convergent-sysv exit ;; mc68k:UNIX:SYSTEM5:3.51m) echo m68k-convergent-sysv exit ;; M680?0:D-NIX:5.3:*) echo m68k-diab-dnix exit ;; M68*:*:R3V[5678]*:*) test -r /sysV68 && { echo 'm68k-motorola-sysv'; exit; } ;; 3[345]??:*:4.0:3.0 | 3[34]??A:*:4.0:3.0 | 3[34]??,*:*:4.0:3.0 | 3[34]??/*:*:4.0:3.0 | 4400:*:4.0:3.0 | 4850:*:4.0:3.0 | SKA40:*:4.0:3.0 | SDS2:*:4.0:3.0 | SHG2:*:4.0:3.0 | S7501*:*:4.0:3.0) OS_REL='' test -r /etc/.relid \ && OS_REL=.`sed -n 's/[^ ]* [^ ]* \([0-9][0-9]\).*/\1/p' < /etc/.relid` /bin/uname -p 2>/dev/null | grep 86 >/dev/null \ && { echo i486-ncr-sysv4.3${OS_REL}; exit; } /bin/uname -p 2>/dev/null | /bin/grep entium >/dev/null \ && { echo i586-ncr-sysv4.3${OS_REL}; exit; } ;; 3[34]??:*:4.0:* | 3[34]??,*:*:4.0:*) /bin/uname -p 2>/dev/null | grep 86 >/dev/null \ && { echo i486-ncr-sysv4; exit; } ;; NCR*:*:4.2:* | MPRAS*:*:4.2:*) OS_REL='.3' test -r /etc/.relid \ && OS_REL=.`sed -n 's/[^ ]* [^ ]* \([0-9][0-9]\).*/\1/p' < /etc/.relid` /bin/uname -p 2>/dev/null | grep 86 >/dev/null \ && { echo i486-ncr-sysv4.3${OS_REL}; exit; } /bin/uname -p 2>/dev/null | /bin/grep entium >/dev/null \ && { echo i586-ncr-sysv4.3${OS_REL}; exit; } /bin/uname -p 2>/dev/null | /bin/grep pteron >/dev/null \ && { echo i586-ncr-sysv4.3${OS_REL}; exit; } ;; m68*:LynxOS:2.*:* | m68*:LynxOS:3.0*:*) echo m68k-unknown-lynxos${UNAME_RELEASE} exit ;; mc68030:UNIX_System_V:4.*:*) echo m68k-atari-sysv4 exit ;; TSUNAMI:LynxOS:2.*:*) echo sparc-unknown-lynxos${UNAME_RELEASE} exit ;; rs6000:LynxOS:2.*:*) echo rs6000-unknown-lynxos${UNAME_RELEASE} exit ;; PowerPC:LynxOS:2.*:* | PowerPC:LynxOS:3.[01]*:* | PowerPC:LynxOS:4.[02]*:*) echo powerpc-unknown-lynxos${UNAME_RELEASE} exit ;; SM[BE]S:UNIX_SV:*:*) echo mips-dde-sysv${UNAME_RELEASE} exit ;; RM*:ReliantUNIX-*:*:*) echo mips-sni-sysv4 exit ;; RM*:SINIX-*:*:*) echo mips-sni-sysv4 exit ;; *:SINIX-*:*:*) if uname -p 2>/dev/null >/dev/null ; then UNAME_MACHINE=`(uname -p) 2>/dev/null` echo ${UNAME_MACHINE}-sni-sysv4 else echo ns32k-sni-sysv fi exit ;; PENTIUM:*:4.0*:*) # Unisys `ClearPath HMP IX 4000' SVR4/MP effort # says echo i586-unisys-sysv4 exit ;; *:UNIX_System_V:4*:FTX*) # From Gerald Hewes . # How about differentiating between stratus architectures? -djm echo hppa1.1-stratus-sysv4 exit ;; *:*:*:FTX*) # From seanf@swdc.stratus.com. echo i860-stratus-sysv4 exit ;; i*86:VOS:*:*) # From Paul.Green@stratus.com. echo ${UNAME_MACHINE}-stratus-vos exit ;; *:VOS:*:*) # From Paul.Green@stratus.com. echo hppa1.1-stratus-vos exit ;; mc68*:A/UX:*:*) echo m68k-apple-aux${UNAME_RELEASE} exit ;; news*:NEWS-OS:6*:*) echo mips-sony-newsos6 exit ;; R[34]000:*System_V*:*:* | R4000:UNIX_SYSV:*:* | R*000:UNIX_SV:*:*) if [ -d /usr/nec ]; then echo mips-nec-sysv${UNAME_RELEASE} else echo mips-unknown-sysv${UNAME_RELEASE} fi exit ;; BeBox:BeOS:*:*) # BeOS running on hardware made by Be, PPC only. echo powerpc-be-beos exit ;; BeMac:BeOS:*:*) # BeOS running on Mac or Mac clone, PPC only. echo powerpc-apple-beos exit ;; BePC:BeOS:*:*) # BeOS running on Intel PC compatible. echo i586-pc-beos exit ;; BePC:Haiku:*:*) # Haiku running on Intel PC compatible. echo i586-pc-haiku exit ;; SX-4:SUPER-UX:*:*) echo sx4-nec-superux${UNAME_RELEASE} exit ;; SX-5:SUPER-UX:*:*) echo sx5-nec-superux${UNAME_RELEASE} exit ;; SX-6:SUPER-UX:*:*) echo sx6-nec-superux${UNAME_RELEASE} exit ;; SX-7:SUPER-UX:*:*) echo sx7-nec-superux${UNAME_RELEASE} exit ;; SX-8:SUPER-UX:*:*) echo sx8-nec-superux${UNAME_RELEASE} exit ;; SX-8R:SUPER-UX:*:*) echo sx8r-nec-superux${UNAME_RELEASE} exit ;; Power*:Rhapsody:*:*) echo powerpc-apple-rhapsody${UNAME_RELEASE} exit ;; *:Rhapsody:*:*) echo ${UNAME_MACHINE}-apple-rhapsody${UNAME_RELEASE} exit ;; *:Darwin:*:*) UNAME_PROCESSOR=`uname -p` || UNAME_PROCESSOR=unknown case $UNAME_PROCESSOR in i386) eval $set_cc_for_build if [ "$CC_FOR_BUILD" != 'no_compiler_found' ]; then if (echo '#ifdef __LP64__'; echo IS_64BIT_ARCH; echo '#endif') | \ (CCOPTS= $CC_FOR_BUILD -E - 2>/dev/null) | \ grep IS_64BIT_ARCH >/dev/null then UNAME_PROCESSOR="x86_64" fi fi ;; unknown) UNAME_PROCESSOR=powerpc ;; esac echo ${UNAME_PROCESSOR}-apple-darwin${UNAME_RELEASE} exit ;; *:procnto*:*:* | *:QNX:[0123456789]*:*) UNAME_PROCESSOR=`uname -p` if test "$UNAME_PROCESSOR" = "x86"; then UNAME_PROCESSOR=i386 UNAME_MACHINE=pc fi echo ${UNAME_PROCESSOR}-${UNAME_MACHINE}-nto-qnx${UNAME_RELEASE} exit ;; *:QNX:*:4*) echo i386-pc-qnx exit ;; NSE-?:NONSTOP_KERNEL:*:*) echo nse-tandem-nsk${UNAME_RELEASE} exit ;; NSR-?:NONSTOP_KERNEL:*:*) echo nsr-tandem-nsk${UNAME_RELEASE} exit ;; *:NonStop-UX:*:*) echo mips-compaq-nonstopux exit ;; BS2000:POSIX*:*:*) echo bs2000-siemens-sysv exit ;; DS/*:UNIX_System_V:*:*) echo ${UNAME_MACHINE}-${UNAME_SYSTEM}-${UNAME_RELEASE} exit ;; *:Plan9:*:*) # "uname -m" is not consistent, so use $cputype instead. 386 # is converted to i386 for consistency with other x86 # operating systems. if test "$cputype" = "386"; then UNAME_MACHINE=i386 else UNAME_MACHINE="$cputype" fi echo ${UNAME_MACHINE}-unknown-plan9 exit ;; *:TOPS-10:*:*) echo pdp10-unknown-tops10 exit ;; *:TENEX:*:*) echo pdp10-unknown-tenex exit ;; KS10:TOPS-20:*:* | KL10:TOPS-20:*:* | TYPE4:TOPS-20:*:*) echo pdp10-dec-tops20 exit ;; XKL-1:TOPS-20:*:* | TYPE5:TOPS-20:*:*) echo pdp10-xkl-tops20 exit ;; *:TOPS-20:*:*) echo pdp10-unknown-tops20 exit ;; *:ITS:*:*) echo pdp10-unknown-its exit ;; SEI:*:*:SEIUX) echo mips-sei-seiux${UNAME_RELEASE} exit ;; *:DragonFly:*:*) echo ${UNAME_MACHINE}-unknown-dragonfly`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'` exit ;; *:*VMS:*:*) UNAME_MACHINE=`(uname -p) 2>/dev/null` case "${UNAME_MACHINE}" in A*) echo alpha-dec-vms ; exit ;; I*) echo ia64-dec-vms ; exit ;; V*) echo vax-dec-vms ; exit ;; esac ;; *:XENIX:*:SysV) echo i386-pc-xenix exit ;; i*86:skyos:*:*) echo ${UNAME_MACHINE}-pc-skyos`echo ${UNAME_RELEASE}` | sed -e 's/ .*$//' exit ;; i*86:rdos:*:*) echo ${UNAME_MACHINE}-pc-rdos exit ;; i*86:AROS:*:*) echo ${UNAME_MACHINE}-pc-aros exit ;; esac #echo '(No uname command or uname output not recognized.)' 1>&2 #echo "${UNAME_MACHINE}:${UNAME_SYSTEM}:${UNAME_RELEASE}:${UNAME_VERSION}" 1>&2 eval $set_cc_for_build cat >$dummy.c < # include #endif main () { #if defined (sony) #if defined (MIPSEB) /* BFD wants "bsd" instead of "newsos". Perhaps BFD should be changed, I don't know.... */ printf ("mips-sony-bsd\n"); exit (0); #else #include printf ("m68k-sony-newsos%s\n", #ifdef NEWSOS4 "4" #else "" #endif ); exit (0); #endif #endif #if defined (__arm) && defined (__acorn) && defined (__unix) printf ("arm-acorn-riscix\n"); exit (0); #endif #if defined (hp300) && !defined (hpux) printf ("m68k-hp-bsd\n"); exit (0); #endif #if defined (NeXT) #if !defined (__ARCHITECTURE__) #define __ARCHITECTURE__ "m68k" #endif int version; version=`(hostinfo | sed -n 's/.*NeXT Mach \([0-9]*\).*/\1/p') 2>/dev/null`; if (version < 4) printf ("%s-next-nextstep%d\n", __ARCHITECTURE__, version); else printf ("%s-next-openstep%d\n", __ARCHITECTURE__, version); exit (0); #endif #if defined (MULTIMAX) || defined (n16) #if defined (UMAXV) printf ("ns32k-encore-sysv\n"); exit (0); #else #if defined (CMU) printf ("ns32k-encore-mach\n"); exit (0); #else printf ("ns32k-encore-bsd\n"); exit (0); #endif #endif #endif #if defined (__386BSD__) printf ("i386-pc-bsd\n"); exit (0); #endif #if defined (sequent) #if defined (i386) printf ("i386-sequent-dynix\n"); exit (0); #endif #if defined (ns32000) printf ("ns32k-sequent-dynix\n"); exit (0); #endif #endif #if defined (_SEQUENT_) struct utsname un; uname(&un); if (strncmp(un.version, "V2", 2) == 0) { printf ("i386-sequent-ptx2\n"); exit (0); } if (strncmp(un.version, "V1", 2) == 0) { /* XXX is V1 correct? */ printf ("i386-sequent-ptx1\n"); exit (0); } printf ("i386-sequent-ptx\n"); exit (0); #endif #if defined (vax) # if !defined (ultrix) # include # if defined (BSD) # if BSD == 43 printf ("vax-dec-bsd4.3\n"); exit (0); # else # if BSD == 199006 printf ("vax-dec-bsd4.3reno\n"); exit (0); # else printf ("vax-dec-bsd\n"); exit (0); # endif # endif # else printf ("vax-dec-bsd\n"); exit (0); # endif # else printf ("vax-dec-ultrix\n"); exit (0); # endif #endif #if defined (alliant) && defined (i860) printf ("i860-alliant-bsd\n"); exit (0); #endif exit (1); } EOF $CC_FOR_BUILD -o $dummy $dummy.c 2>/dev/null && SYSTEM_NAME=`$dummy` && { echo "$SYSTEM_NAME"; exit; } # Apollos put the system type in the environment. test -d /usr/apollo && { echo ${ISP}-apollo-${SYSTYPE}; exit; } # Convex versions that predate uname can use getsysinfo(1) if [ -x /usr/convex/getsysinfo ] then case `getsysinfo -f cpu_type` in c1*) echo c1-convex-bsd exit ;; c2*) if getsysinfo -f scalar_acc then echo c32-convex-bsd else echo c2-convex-bsd fi exit ;; c34*) echo c34-convex-bsd exit ;; c38*) echo c38-convex-bsd exit ;; c4*) echo c4-convex-bsd exit ;; esac fi cat >&2 < in order to provide the needed information to handle your system. config.guess timestamp = $timestamp uname -m = `(uname -m) 2>/dev/null || echo unknown` uname -r = `(uname -r) 2>/dev/null || echo unknown` uname -s = `(uname -s) 2>/dev/null || echo unknown` uname -v = `(uname -v) 2>/dev/null || echo unknown` /usr/bin/uname -p = `(/usr/bin/uname -p) 2>/dev/null` /bin/uname -X = `(/bin/uname -X) 2>/dev/null` hostinfo = `(hostinfo) 2>/dev/null` /bin/universe = `(/bin/universe) 2>/dev/null` /usr/bin/arch -k = `(/usr/bin/arch -k) 2>/dev/null` /bin/arch = `(/bin/arch) 2>/dev/null` /usr/bin/oslevel = `(/usr/bin/oslevel) 2>/dev/null` /usr/convex/getsysinfo = `(/usr/convex/getsysinfo) 2>/dev/null` UNAME_MACHINE = ${UNAME_MACHINE} UNAME_RELEASE = ${UNAME_RELEASE} UNAME_SYSTEM = ${UNAME_SYSTEM} UNAME_VERSION = ${UNAME_VERSION} EOF exit 1 # Local variables: # eval: (add-hook 'write-file-hooks 'time-stamp) # time-stamp-start: "timestamp='" # time-stamp-format: "%:y-%02m-%02d" # time-stamp-end: "'" # End: healpy-1.8.1/cfitsio/eval_l.c0000654000175000017530000016627312272000775016502 0ustar zoncaplanck00000000000000/* A lexical scanner generated by flex */ /* Scanner skeleton version: * $Header: /software/lheasoft/lheavc/hip/cfitsio/eval_l.c,v 3.47 2009/09/04 18:35:05 pence Exp $ */ #define FLEX_SCANNER #define FF_FLEX_MAJOR_VERSION 2 #define FF_FLEX_MINOR_VERSION 5 #include /* cfront 1.2 defines "c_plusplus" instead of "__cplusplus" */ #ifdef c_plusplus #ifndef __cplusplus #define __cplusplus #endif #endif #ifdef __cplusplus #include #include /* Use prototypes in function declarations. */ #define FF_USE_PROTOS /* The "const" storage-class-modifier is valid. */ #define FF_USE_CONST #else /* ! __cplusplus */ #if __STDC__ #define FF_USE_PROTOS #define FF_USE_CONST #endif /* __STDC__ */ #endif /* ! __cplusplus */ #ifdef __TURBOC__ #pragma warn -rch #pragma warn -use #include #include #define FF_USE_CONST #define FF_USE_PROTOS #endif #ifdef FF_USE_CONST #define ffconst const #else #define ffconst #endif #ifdef FF_USE_PROTOS #define FF_PROTO(proto) proto #else #define FF_PROTO(proto) () #endif /* Returned upon end-of-file. */ #define FF_NULL 0 /* Promotes a possibly negative, possibly signed char to an unsigned * integer for use as an array index. If the signed char is negative, * we want to instead treat it as an 8-bit unsigned char, hence the * double cast. */ #define FF_SC_TO_UI(c) ((unsigned int) (unsigned char) c) /* Enter a start condition. This macro really ought to take a parameter, * but we do it the disgusting crufty way forced on us by the ()-less * definition of BEGIN. */ #define BEGIN ff_start = 1 + 2 * /* Translate the current start state into a value that can be later handed * to BEGIN to return to the state. The FFSTATE alias is for lex * compatibility. */ #define FF_START ((ff_start - 1) / 2) #define FFSTATE FF_START /* Action number for EOF rule of a given start state. */ #define FF_STATE_EOF(state) (FF_END_OF_BUFFER + state + 1) /* Special action meaning "start processing a new file". */ #define FF_NEW_FILE ffrestart( ffin ) #define FF_END_OF_BUFFER_CHAR 0 /* Size of default input buffer. */ #define FF_BUF_SIZE 16384 typedef struct ff_buffer_state *FF_BUFFER_STATE; extern int ffleng; extern FILE *ffin, *ffout; #define EOB_ACT_CONTINUE_SCAN 0 #define EOB_ACT_END_OF_FILE 1 #define EOB_ACT_LAST_MATCH 2 /* The funky do-while in the following #define is used to turn the definition * int a single C statement (which needs a semi-colon terminator). This * avoids problems with code like: * * if ( condition_holds ) * ffless( 5 ); * else * do_something_else(); * * Prior to using the do-while the compiler would get upset at the * "else" because it interpreted the "if" statement as being all * done when it reached the ';' after the ffless() call. */ /* Return all but the first 'n' matched characters back to the input stream. */ #define ffless(n) \ do \ { \ /* Undo effects of setting up fftext. */ \ *ff_cp = ff_hold_char; \ FF_RESTORE_FF_MORE_OFFSET \ ff_c_buf_p = ff_cp = ff_bp + n - FF_MORE_ADJ; \ FF_DO_BEFORE_ACTION; /* set up fftext again */ \ } \ while ( 0 ) #define unput(c) ffunput( c, fftext_ptr ) /* The following is because we cannot portably get our hands on size_t * (without autoconf's help, which isn't available because we want * flex-generated scanners to compile on their own). */ typedef unsigned int ff_size_t; struct ff_buffer_state { FILE *ff_input_file; char *ff_ch_buf; /* input buffer */ char *ff_buf_pos; /* current position in input buffer */ /* Size of input buffer in bytes, not including room for EOB * characters. */ ff_size_t ff_buf_size; /* Number of characters read into ff_ch_buf, not including EOB * characters. */ int ff_n_chars; /* Whether we "own" the buffer - i.e., we know we created it, * and can realloc() it to grow it, and should free() it to * delete it. */ int ff_is_our_buffer; /* Whether this is an "interactive" input source; if so, and * if we're using stdio for input, then we want to use getc() * instead of fread(), to make sure we stop fetching input after * each newline. */ int ff_is_interactive; /* Whether we're considered to be at the beginning of a line. * If so, '^' rules will be active on the next match, otherwise * not. */ int ff_at_bol; /* Whether to try to fill the input buffer when we reach the * end of it. */ int ff_fill_buffer; int ff_buffer_status; #define FF_BUFFER_NEW 0 #define FF_BUFFER_NORMAL 1 /* When an EOF's been seen but there's still some text to process * then we mark the buffer as FF_EOF_PENDING, to indicate that we * shouldn't try reading from the input source any more. We might * still have a bunch of tokens to match, though, because of * possible backing-up. * * When we actually see the EOF, we change the status to "new" * (via ffrestart()), so that the user can continue scanning by * just pointing ffin at a new input file. */ #define FF_BUFFER_EOF_PENDING 2 }; static FF_BUFFER_STATE ff_current_buffer = 0; /* We provide macros for accessing buffer states in case in the * future we want to put the buffer states in a more general * "scanner state". */ #define FF_CURRENT_BUFFER ff_current_buffer /* ff_hold_char holds the character lost when fftext is formed. */ static char ff_hold_char; static int ff_n_chars; /* number of characters read into ff_ch_buf */ int ffleng; /* Points to current character in buffer. */ static char *ff_c_buf_p = (char *) 0; static int ff_init = 1; /* whether we need to initialize */ static int ff_start = 0; /* start state number */ /* Flag which is used to allow ffwrap()'s to do buffer switches * instead of setting up a fresh ffin. A bit of a hack ... */ static int ff_did_buffer_switch_on_eof; void ffrestart FF_PROTO(( FILE *input_file )); void ff_switch_to_buffer FF_PROTO(( FF_BUFFER_STATE new_buffer )); void ff_load_buffer_state FF_PROTO(( void )); FF_BUFFER_STATE ff_create_buffer FF_PROTO(( FILE *file, int size )); void ff_delete_buffer FF_PROTO(( FF_BUFFER_STATE b )); void ff_init_buffer FF_PROTO(( FF_BUFFER_STATE b, FILE *file )); void ff_flush_buffer FF_PROTO(( FF_BUFFER_STATE b )); #define FF_FLUSH_BUFFER ff_flush_buffer( ff_current_buffer ) FF_BUFFER_STATE ff_scan_buffer FF_PROTO(( char *base, ff_size_t size )); FF_BUFFER_STATE ff_scan_string FF_PROTO(( ffconst char *ff_str )); FF_BUFFER_STATE ff_scan_bytes FF_PROTO(( ffconst char *bytes, int len )); static void *ff_flex_alloc FF_PROTO(( ff_size_t )); static void *ff_flex_realloc FF_PROTO(( void *, ff_size_t )); static void ff_flex_free FF_PROTO(( void * )); #define ff_new_buffer ff_create_buffer #define ff_set_interactive(is_interactive) \ { \ if ( ! ff_current_buffer ) \ ff_current_buffer = ff_create_buffer( ffin, FF_BUF_SIZE ); \ ff_current_buffer->ff_is_interactive = is_interactive; \ } #define ff_set_bol(at_bol) \ { \ if ( ! ff_current_buffer ) \ ff_current_buffer = ff_create_buffer( ffin, FF_BUF_SIZE ); \ ff_current_buffer->ff_at_bol = at_bol; \ } #define FF_AT_BOL() (ff_current_buffer->ff_at_bol) typedef unsigned char FF_CHAR; FILE *ffin = (FILE *) 0, *ffout = (FILE *) 0; typedef int ff_state_type; extern char *fftext; #define fftext_ptr fftext static ff_state_type ff_get_previous_state FF_PROTO(( void )); static ff_state_type ff_try_NUL_trans FF_PROTO(( ff_state_type current_state )); static int ff_get_next_buffer FF_PROTO(( void )); static void ff_fatal_error FF_PROTO(( ffconst char msg[] )); /* Done after the current pattern has been matched and before the * corresponding action - sets up fftext. */ #define FF_DO_BEFORE_ACTION \ fftext_ptr = ff_bp; \ ffleng = (int) (ff_cp - ff_bp); \ ff_hold_char = *ff_cp; \ *ff_cp = '\0'; \ ff_c_buf_p = ff_cp; #define FF_NUM_RULES 26 #define FF_END_OF_BUFFER 27 static ffconst short int ff_accept[160] = { 0, 0, 0, 27, 25, 1, 24, 15, 25, 25, 25, 25, 25, 25, 25, 7, 5, 21, 25, 20, 10, 10, 10, 10, 6, 10, 10, 10, 10, 10, 14, 10, 10, 10, 10, 10, 10, 10, 25, 1, 19, 0, 9, 0, 8, 0, 10, 17, 0, 0, 0, 0, 0, 0, 0, 14, 0, 7, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 7, 5, 0, 23, 18, 22, 10, 10, 10, 2, 10, 10, 10, 4, 10, 10, 10, 10, 3, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 16, 0, 8, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 7, 11, 10, 20, 21, 10, 10, 10, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 15, 0, 0, 12, 0, 0, 0, 0, 0, 0, 0, 13, 0, 0 } ; static ffconst int ff_ec[256] = { 0, 1, 1, 1, 1, 1, 1, 1, 1, 2, 3, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 4, 5, 6, 7, 1, 8, 9, 10, 11, 12, 13, 1, 13, 14, 1, 15, 15, 16, 16, 16, 16, 16, 16, 17, 17, 1, 1, 18, 19, 20, 1, 1, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 30, 31, 30, 32, 33, 30, 34, 35, 30, 36, 37, 30, 30, 38, 30, 30, 1, 1, 1, 39, 40, 1, 41, 42, 23, 43, 44, 45, 46, 28, 47, 30, 30, 48, 30, 49, 50, 30, 51, 52, 30, 53, 54, 30, 30, 38, 30, 30, 1, 55, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 } ; static ffconst int ff_meta[56] = { 0, 1, 1, 2, 1, 1, 1, 3, 1, 1, 1, 1, 1, 1, 1, 4, 4, 4, 1, 1, 1, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 1, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 1 } ; static ffconst short int ff_base[167] = { 0, 0, 0, 367, 368, 364, 368, 346, 359, 356, 355, 353, 351, 32, 347, 66, 103, 339, 44, 338, 25, 52, 316, 26, 315, 34, 133, 48, 61, 125, 368, 0, 29, 45, 60, 81, 82, 93, 299, 351, 368, 347, 368, 344, 343, 342, 368, 368, 339, 314, 315, 313, 294, 295, 293, 368, 121, 164, 307, 301, 70, 117, 43, 296, 276, 271, 58, 86, 79, 269, 152, 168, 181, 368, 368, 368, 151, 162, 0, 180, 189, 190, 191, 309, 196, 199, 205, 204, 211, 214, 207, 223, 224, 232, 238, 243, 245, 222, 246, 368, 311, 310, 279, 282, 278, 259, 262, 258, 252, 286, 295, 294, 293, 292, 291, 290, 267, 288, 258, 285, 284, 278, 270, 268, 259, 218, 252, 264, 272, 368, 251, 368, 368, 260, 280, 283, 236, 222, 230, 193, 184, 212, 208, 202, 173, 156, 368, 133, 126, 368, 104, 98, 119, 132, 80, 94, 92, 368, 78, 368, 323, 325, 329, 333, 68, 67, 337 } ; static ffconst short int ff_def[167] = { 0, 159, 1, 159, 159, 159, 159, 159, 160, 161, 162, 159, 163, 159, 159, 159, 159, 159, 159, 159, 164, 164, 164, 164, 164, 164, 164, 164, 164, 164, 159, 165, 164, 164, 164, 164, 164, 164, 159, 159, 159, 160, 159, 166, 161, 162, 159, 159, 163, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 164, 164, 165, 164, 164, 164, 164, 26, 164, 164, 164, 164, 164, 164, 164, 164, 164, 164, 164, 164, 164, 164, 164, 159, 166, 166, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 164, 159, 159, 164, 164, 164, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 0, 159, 159, 159, 159, 159, 159, 159 } ; static ffconst short int ff_nxt[424] = { 0, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 4, 14, 4, 15, 16, 16, 16, 17, 18, 19, 20, 21, 22, 22, 23, 24, 25, 26, 22, 22, 27, 28, 29, 22, 22, 24, 22, 22, 30, 31, 32, 21, 22, 33, 24, 34, 22, 35, 36, 37, 22, 22, 24, 22, 38, 49, 77, 50, 81, 80, 51, 73, 74, 75, 78, 78, 79, 115, 78, 82, 78, 76, 84, 78, 52, 116, 53, 90, 54, 56, 57, 57, 57, 85, 78, 86, 58, 78, 157, 79, 59, 78, 60, 87, 111, 91, 61, 62, 63, 78, 78, 120, 157, 92, 157, 112, 64, 88, 88, 65, 121, 66, 93, 67, 68, 69, 70, 71, 71, 71, 78, 78, 124, 158, 94, 96, 72, 72, 125, 122, 88, 97, 78, 95, 56, 108, 108, 108, 123, 88, 88, 113, 157, 156, 98, 72, 72, 83, 83, 83, 155, 154, 114, 83, 83, 83, 83, 83, 83, 89, 129, 153, 88, 152, 78, 56, 57, 57, 57, 146, 83, 129, 78, 83, 83, 83, 83, 83, 57, 57, 57, 70, 71, 71, 71, 130, 47, 72, 72, 129, 78, 72, 72, 127, 79, 128, 128, 128, 129, 129, 129, 78, 74, 75, 131, 129, 72, 72, 129, 73, 72, 72, 132, 129, 129, 146, 129, 79, 40, 78, 129, 47, 149, 129, 151, 88, 88, 99, 78, 78, 78, 129, 129, 129, 150, 78, 74, 75, 78, 133, 149, 129, 148, 78, 78, 131, 78, 129, 88, 134, 78, 73, 129, 78, 129, 129, 132, 147, 40, 99, 129, 78, 78, 78, 47, 99, 108, 108, 108, 129, 145, 78, 40, 146, 135, 72, 72, 78, 128, 128, 128, 132, 78, 73, 78, 78, 128, 128, 128, 129, 78, 131, 129, 47, 72, 72, 146, 75, 74, 78, 144, 99, 143, 40, 132, 73, 131, 75, 74, 142, 141, 140, 139, 138, 137, 136, 101, 101, 129, 78, 126, 119, 78, 41, 118, 41, 41, 44, 44, 45, 117, 45, 45, 48, 110, 48, 48, 100, 109, 100, 100, 107, 106, 105, 104, 103, 102, 42, 46, 159, 101, 42, 39, 99, 78, 78, 75, 73, 55, 42, 47, 46, 43, 42, 40, 39, 159, 3, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159 } ; static ffconst short int ff_chk[424] = { 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 13, 20, 13, 25, 23, 13, 18, 18, 18, 20, 23, 21, 62, 32, 25, 165, 164, 27, 25, 13, 62, 13, 32, 13, 15, 15, 15, 15, 27, 33, 28, 15, 27, 158, 21, 15, 21, 15, 28, 60, 33, 15, 15, 15, 34, 28, 66, 156, 34, 155, 60, 15, 37, 37, 15, 66, 15, 34, 15, 15, 15, 16, 16, 16, 16, 35, 36, 68, 154, 35, 36, 16, 16, 68, 67, 37, 36, 37, 35, 56, 56, 56, 56, 67, 29, 29, 61, 153, 152, 37, 16, 16, 26, 26, 26, 151, 150, 61, 26, 26, 26, 26, 26, 26, 29, 76, 148, 29, 147, 29, 70, 70, 70, 70, 145, 26, 77, 26, 26, 26, 26, 26, 26, 57, 57, 57, 71, 71, 71, 71, 77, 144, 57, 57, 79, 76, 71, 71, 72, 79, 72, 72, 72, 80, 81, 82, 77, 80, 81, 82, 84, 57, 57, 85, 84, 71, 71, 85, 87, 86, 143, 90, 79, 86, 79, 88, 142, 141, 89, 140, 88, 88, 89, 80, 81, 82, 97, 91, 92, 139, 84, 91, 92, 85, 87, 138, 93, 137, 87, 86, 93, 90, 94, 88, 90, 88, 94, 95, 89, 96, 98, 95, 136, 96, 98, 130, 97, 91, 92, 130, 126, 108, 108, 108, 133, 125, 93, 124, 133, 97, 108, 108, 94, 127, 127, 127, 123, 95, 122, 96, 98, 128, 128, 128, 134, 130, 121, 135, 134, 108, 108, 135, 120, 119, 133, 118, 117, 116, 115, 114, 113, 112, 111, 110, 109, 107, 106, 105, 104, 103, 102, 101, 100, 83, 134, 69, 65, 135, 160, 64, 160, 160, 161, 161, 162, 63, 162, 162, 163, 59, 163, 163, 166, 58, 166, 166, 54, 53, 52, 51, 50, 49, 48, 45, 44, 43, 41, 39, 38, 24, 22, 19, 17, 14, 12, 11, 10, 9, 8, 7, 5, 3, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159, 159 } ; static ff_state_type ff_last_accepting_state; static char *ff_last_accepting_cpos; /* The intent behind this definition is that it'll catch * any uses of REJECT which flex missed. */ #define REJECT reject_used_but_not_detected #define ffmore() ffmore_used_but_not_detected #define FF_MORE_ADJ 0 #define FF_RESTORE_FF_MORE_OFFSET char *fftext; #line 1 "eval.l" #define INITIAL 0 #line 2 "eval.l" /************************************************************************/ /* */ /* CFITSIO Lexical Parser */ /* */ /* This file is one of 3 files containing code which parses an */ /* arithmetic expression and evaluates it in the context of an input */ /* FITS file table extension. The CFITSIO lexical parser is divided */ /* into the following 3 parts/files: the CFITSIO "front-end", */ /* eval_f.c, contains the interface between the user/CFITSIO and the */ /* real core of the parser; the FLEX interpreter, eval_l.c, takes the */ /* input string and parses it into tokens and identifies the FITS */ /* information required to evaluate the expression (ie, keywords and */ /* columns); and, the BISON grammar and evaluation routines, eval_y.c, */ /* receives the FLEX output and determines and performs the actual */ /* operations. The files eval_l.c and eval_y.c are produced from */ /* running flex and bison on the files eval.l and eval.y, respectively. */ /* (flex and bison are available from any GNU archive: see www.gnu.org) */ /* */ /* The grammar rules, rather than evaluating the expression in situ, */ /* builds a tree, or Nodal, structure mapping out the order of */ /* operations and expression dependencies. This "compilation" process */ /* allows for much faster processing of multiple rows. This technique */ /* was developed by Uwe Lammers of the XMM Science Analysis System, */ /* although the CFITSIO implementation is entirely code original. */ /* */ /* */ /* Modification History: */ /* */ /* Kent Blackburn c1992 Original parser code developed for the */ /* FTOOLS software package, in particular, */ /* the fselect task. */ /* Kent Blackburn c1995 BIT column support added */ /* Peter D Wilson Feb 1998 Vector column support added */ /* Peter D Wilson May 1998 Ported to CFITSIO library. User */ /* interface routines written, in essence */ /* making fselect, fcalc, and maketime */ /* capabilities available to all tools */ /* via single function calls. */ /* Peter D Wilson Jun 1998 Major rewrite of parser core, so as to */ /* create a run-time evaluation tree, */ /* inspired by the work of Uwe Lammers, */ /* resulting in a speed increase of */ /* 10-100 times. */ /* Peter D Wilson Jul 1998 gtifilter(a,b,c,d) function added */ /* Peter D Wilson Aug 1998 regfilter(a,b,c,d) function added */ /* Peter D Wilson Jul 1999 Make parser fitsfile-independent, */ /* allowing a purely vector-based usage */ /* */ /************************************************************************/ #include #include #include #ifdef sparc #include #else #include #endif #include "eval_defs.h" ParseData gParse; /* Global structure holding all parser information */ /***** Internal functions *****/ int ffGetVariable( char *varName, FFSTYPE *varVal ); static int find_variable( char *varName ); static int expr_read( char *buf, int nbytes ); /***** Definitions *****/ #define FF_NO_UNPUT /* Don't include FFUNPUT function */ #define FF_NEVER_INTERACTIVE 1 #define MAXCHR 256 #define MAXBIT 128 #define OCT_0 "000" #define OCT_1 "001" #define OCT_2 "010" #define OCT_3 "011" #define OCT_4 "100" #define OCT_5 "101" #define OCT_6 "110" #define OCT_7 "111" #define OCT_X "xxx" #define HEX_0 "0000" #define HEX_1 "0001" #define HEX_2 "0010" #define HEX_3 "0011" #define HEX_4 "0100" #define HEX_5 "0101" #define HEX_6 "0110" #define HEX_7 "0111" #define HEX_8 "1000" #define HEX_9 "1001" #define HEX_A "1010" #define HEX_B "1011" #define HEX_C "1100" #define HEX_D "1101" #define HEX_E "1110" #define HEX_F "1111" #define HEX_X "xxxx" /* MJT - 13 June 1996 read from buffer instead of stdin (as per old ftools.skel) */ #undef FF_INPUT #define FF_INPUT(buf,result,max_size) \ if ( (result = expr_read( (char *) buf, max_size )) < 0 ) \ FF_FATAL_ERROR( "read() in flex scanner failed" ); /* Macros after this point can all be overridden by user definitions in * section 1. */ #ifndef FF_SKIP_FFWRAP #ifdef __cplusplus extern "C" int ffwrap FF_PROTO(( void )); #else extern int ffwrap FF_PROTO(( void )); #endif #endif #ifndef FF_NO_UNPUT static void ffunput FF_PROTO(( int c, char *buf_ptr )); #endif #ifndef fftext_ptr static void ff_flex_strncpy FF_PROTO(( char *, ffconst char *, int )); #endif #ifdef FF_NEED_STRLEN static int ff_flex_strlen FF_PROTO(( ffconst char * )); #endif #ifndef FF_NO_INPUT #ifdef __cplusplus static int ffinput FF_PROTO(( void )); #else static int input FF_PROTO(( void )); #endif #endif #if FF_STACK_USED static int ff_start_stack_ptr = 0; static int ff_start_stack_depth = 0; static int *ff_start_stack = 0; #ifndef FF_NO_PUSH_STATE static void ff_push_state FF_PROTO(( int new_state )); #endif #ifndef FF_NO_POP_STATE static void ff_pop_state FF_PROTO(( void )); #endif #ifndef FF_NO_TOP_STATE static int ff_top_state FF_PROTO(( void )); #endif #else #define FF_NO_PUSH_STATE 1 #define FF_NO_POP_STATE 1 #define FF_NO_TOP_STATE 1 #endif #ifdef FF_MALLOC_DECL FF_MALLOC_DECL #else #if __STDC__ #ifndef __cplusplus #include #endif #else /* Just try to get by without declaring the routines. This will fail * miserably on non-ANSI systems for which sizeof(size_t) != sizeof(int) * or sizeof(void*) != sizeof(int). */ #endif #endif /* Amount of stuff to slurp up with each read. */ #ifndef FF_READ_BUF_SIZE #define FF_READ_BUF_SIZE 8192 #endif /* Copy whatever the last rule matched to the standard output. */ #ifndef ECHO /* This used to be an fputs(), but since the string might contain NUL's, * we now use fwrite(). */ #define ECHO (void) fwrite( fftext, ffleng, 1, ffout ) #endif /* Gets input and stuffs it into "buf". number of characters read, or FF_NULL, * is returned in "result". */ #ifndef FF_INPUT #define FF_INPUT(buf,result,max_size) \ if ( ff_current_buffer->ff_is_interactive ) \ { \ int c = '*', n; \ for ( n = 0; n < max_size && \ (c = getc( ffin )) != EOF && c != '\n'; ++n ) \ buf[n] = (char) c; \ if ( c == '\n' ) \ buf[n++] = (char) c; \ if ( c == EOF && ferror( ffin ) ) \ FF_FATAL_ERROR( "input in flex scanner failed" ); \ result = n; \ } \ else if ( ((result = fread( buf, 1, max_size, ffin )) == 0) \ && ferror( ffin ) ) \ FF_FATAL_ERROR( "input in flex scanner failed" ); #endif /* No semi-colon after return; correct usage is to write "ffterminate();" - * we don't want an extra ';' after the "return" because that will cause * some compilers to complain about unreachable statements. */ #ifndef ffterminate #define ffterminate() return FF_NULL #endif /* Number of entries by which start-condition stack grows. */ #ifndef FF_START_STACK_INCR #define FF_START_STACK_INCR 25 #endif /* Report a fatal error. */ #ifndef FF_FATAL_ERROR #define FF_FATAL_ERROR(msg) ff_fatal_error( msg ) #endif /* Default declaration of generated scanner - a define so the user can * easily add parameters. */ #ifndef FF_DECL #define FF_DECL int fflex FF_PROTO(( void )) #endif /* Code executed at the beginning of each rule, after fftext and ffleng * have been set up. */ #ifndef FF_USER_ACTION #define FF_USER_ACTION #endif /* Code executed at the end of each rule. */ #ifndef FF_BREAK #define FF_BREAK break; #endif #define FF_RULE_SETUP \ FF_USER_ACTION FF_DECL { register ff_state_type ff_current_state; register char *ff_cp, *ff_bp; register int ff_act; #line 142 "eval.l" if ( ff_init ) { ff_init = 0; #ifdef FF_USER_INIT FF_USER_INIT; #endif if ( ! ff_start ) ff_start = 1; /* first start state */ if ( ! ffin ) ffin = stdin; if ( ! ffout ) ffout = stdout; if ( ! ff_current_buffer ) ff_current_buffer = ff_create_buffer( ffin, FF_BUF_SIZE ); ff_load_buffer_state(); } while ( 1 ) /* loops until end-of-file is reached */ { ff_cp = ff_c_buf_p; /* Support of fftext. */ *ff_cp = ff_hold_char; /* ff_bp points to the position in ff_ch_buf of the start of * the current run. */ ff_bp = ff_cp; ff_current_state = ff_start; ff_match: do { register FF_CHAR ff_c = ff_ec[FF_SC_TO_UI(*ff_cp)]; if ( ff_accept[ff_current_state] ) { ff_last_accepting_state = ff_current_state; ff_last_accepting_cpos = ff_cp; } while ( ff_chk[ff_base[ff_current_state] + ff_c] != ff_current_state ) { ff_current_state = (int) ff_def[ff_current_state]; if ( ff_current_state >= 160 ) ff_c = ff_meta[(unsigned int) ff_c]; } ff_current_state = ff_nxt[ff_base[ff_current_state] + (unsigned int) ff_c]; ++ff_cp; } while ( ff_base[ff_current_state] != 368 ); ff_find_action: ff_act = ff_accept[ff_current_state]; if ( ff_act == 0 ) { /* have to back up */ ff_cp = ff_last_accepting_cpos; ff_current_state = ff_last_accepting_state; ff_act = ff_accept[ff_current_state]; } FF_DO_BEFORE_ACTION; do_action: /* This label is used only to access EOF actions. */ switch ( ff_act ) { /* beginning of action switch */ case 0: /* must back up */ /* undo the effects of FF_DO_BEFORE_ACTION */ *ff_cp = ff_hold_char; ff_cp = ff_last_accepting_cpos; ff_current_state = ff_last_accepting_state; goto ff_find_action; case 1: FF_RULE_SETUP #line 144 "eval.l" ; FF_BREAK case 2: FF_RULE_SETUP #line 145 "eval.l" { int len; len = strlen(fftext); while (fftext[len] == ' ') len--; len = len - 1; strncpy(fflval.str,&fftext[1],len); fflval.str[len] = '\0'; return( BITSTR ); } FF_BREAK case 3: FF_RULE_SETUP #line 155 "eval.l" { int len; char tmpstring[256]; char bitstring[256]; len = strlen(fftext); if (len >= 256) { char errMsg[100]; gParse.status = PARSE_SYNTAX_ERR; strcpy (errMsg,"Bit string exceeds maximum length: '"); strncat(errMsg, &(fftext[0]), 20); strcat (errMsg,"...'"); ffpmsg (errMsg); len = 0; } else { while (fftext[len] == ' ') len--; len = len - 1; strncpy(tmpstring,&fftext[1],len); } tmpstring[len] = '\0'; bitstring[0] = '\0'; len = 0; while ( tmpstring[len] != '\0') { switch ( tmpstring[len] ) { case '0': strcat(bitstring,OCT_0); break; case '1': strcat(bitstring,OCT_1); break; case '2': strcat(bitstring,OCT_2); break; case '3': strcat(bitstring,OCT_3); break; case '4': strcat(bitstring,OCT_4); break; case '5': strcat(bitstring,OCT_5); break; case '6': strcat(bitstring,OCT_6); break; case '7': strcat(bitstring,OCT_7); break; case 'x': case 'X': strcat(bitstring,OCT_X); break; } len++; } strcpy( fflval.str, bitstring ); return( BITSTR ); } FF_BREAK case 4: FF_RULE_SETUP #line 215 "eval.l" { int len; char tmpstring[256]; char bitstring[256]; len = strlen(fftext); if (len >= 256) { char errMsg[100]; gParse.status = PARSE_SYNTAX_ERR; strcpy (errMsg,"Hex string exceeds maximum length: '"); strncat(errMsg, &(fftext[0]), 20); strcat (errMsg,"...'"); ffpmsg (errMsg); len = 0; } else { while (fftext[len] == ' ') len--; len = len - 1; strncpy(tmpstring,&fftext[1],len); } tmpstring[len] = '\0'; bitstring[0] = '\0'; len = 0; while ( tmpstring[len] != '\0') { switch ( tmpstring[len] ) { case '0': strcat(bitstring,HEX_0); break; case '1': strcat(bitstring,HEX_1); break; case '2': strcat(bitstring,HEX_2); break; case '3': strcat(bitstring,HEX_3); break; case '4': strcat(bitstring,HEX_4); break; case '5': strcat(bitstring,HEX_5); break; case '6': strcat(bitstring,HEX_6); break; case '7': strcat(bitstring,HEX_7); break; case '8': strcat(bitstring,HEX_8); break; case '9': strcat(bitstring,HEX_9); break; case 'a': case 'A': strcat(bitstring,HEX_A); break; case 'b': case 'B': strcat(bitstring,HEX_B); break; case 'c': case 'C': strcat(bitstring,HEX_C); break; case 'd': case 'D': strcat(bitstring,HEX_D); break; case 'e': case 'E': strcat(bitstring,HEX_E); break; case 'f': case 'F': strcat(bitstring,HEX_F); break; case 'x': case 'X': strcat(bitstring,HEX_X); break; } len++; } strcpy( fflval.str, bitstring ); return( BITSTR ); } FF_BREAK case 5: FF_RULE_SETUP #line 306 "eval.l" { fflval.lng = atol(fftext); return( LONG ); } FF_BREAK case 6: FF_RULE_SETUP #line 310 "eval.l" { if ((fftext[0] == 't') || (fftext[0] == 'T')) fflval.log = 1; else fflval.log = 0; return( BOOLEAN ); } FF_BREAK case 7: FF_RULE_SETUP #line 317 "eval.l" { fflval.dbl = atof(fftext); return( DOUBLE ); } FF_BREAK case 8: FF_RULE_SETUP #line 321 "eval.l" { if( !strcasecmp(fftext,"#PI") ) { fflval.dbl = (double)(4) * atan((double)(1)); return( DOUBLE ); } else if( !strcasecmp(fftext,"#E") ) { fflval.dbl = exp((double)(1)); return( DOUBLE ); } else if( !strcasecmp(fftext,"#DEG") ) { fflval.dbl = ((double)4)*atan((double)1)/((double)180); return( DOUBLE ); } else if( !strcasecmp(fftext,"#ROW") ) { return( ROWREF ); } else if( !strcasecmp(fftext,"#NULL") ) { return( NULLREF ); } else if( !strcasecmp(fftext,"#SNULL") ) { return( SNULLREF ); } else { int len; if (fftext[1] == '$') { len = strlen(fftext) - 3; fflval.str[0] = '#'; strncpy(fflval.str+1,&fftext[2],len); fflval.str[len+1] = '\0'; fftext = fflval.str; } return( (*gParse.getData)(fftext, &fflval) ); } } FF_BREAK case 9: FF_RULE_SETUP #line 349 "eval.l" { int len; len = strlen(fftext) - 2; if (len >= MAX_STRLEN) { char errMsg[100]; gParse.status = PARSE_SYNTAX_ERR; strcpy (errMsg,"String exceeds maximum length: '"); strncat(errMsg, &(fftext[1]), 20); strcat (errMsg,"...'"); ffpmsg (errMsg); len = 0; } else { strncpy(fflval.str,&fftext[1],len); } fflval.str[len] = '\0'; return( STRING ); } FF_BREAK case 10: FF_RULE_SETUP #line 366 "eval.l" { int len,type; if (fftext[0] == '$') { len = strlen(fftext) - 2; strncpy(fflval.str,&fftext[1],len); fflval.str[len] = '\0'; fftext = fflval.str; } type = ffGetVariable(fftext, &fflval); return( type ); } FF_BREAK case 11: FF_RULE_SETUP #line 378 "eval.l" { char *fname; int len=0; fname = &fflval.str[0]; while( (fname[len]=toupper(fftext[len])) ) len++; if( FSTRCMP(fname,"BOX(")==0 || FSTRCMP(fname,"CIRCLE(")==0 || FSTRCMP(fname,"ELLIPSE(")==0 || FSTRCMP(fname,"NEAR(")==0 || FSTRCMP(fname,"ISNULL(")==0 ) /* Return type is always boolean */ return( BFUNCTION ); else if( FSTRCMP(fname,"GTIFILTER(")==0 ) return( GTIFILTER ); else if( FSTRCMP(fname,"REGFILTER(")==0 ) return( REGFILTER ); else if( FSTRCMP(fname,"STRSTR(")==0 ) return( IFUNCTION ); /* Returns integer */ else return( FUNCTION ); } FF_BREAK case 12: FF_RULE_SETUP #line 405 "eval.l" { return( INTCAST ); } FF_BREAK case 13: FF_RULE_SETUP #line 406 "eval.l" { return( FLTCAST ); } FF_BREAK case 14: FF_RULE_SETUP #line 407 "eval.l" { return( POWER ); } FF_BREAK case 15: FF_RULE_SETUP #line 408 "eval.l" { return( NOT ); } FF_BREAK case 16: FF_RULE_SETUP #line 409 "eval.l" { return( OR ); } FF_BREAK case 17: FF_RULE_SETUP #line 410 "eval.l" { return( AND ); } FF_BREAK case 18: FF_RULE_SETUP #line 411 "eval.l" { return( EQ ); } FF_BREAK case 19: FF_RULE_SETUP #line 412 "eval.l" { return( NE ); } FF_BREAK case 20: FF_RULE_SETUP #line 413 "eval.l" { return( GT ); } FF_BREAK case 21: FF_RULE_SETUP #line 414 "eval.l" { return( LT ); } FF_BREAK case 22: FF_RULE_SETUP #line 415 "eval.l" { return( GTE ); } FF_BREAK case 23: FF_RULE_SETUP #line 416 "eval.l" { return( LTE ); } FF_BREAK case 24: FF_RULE_SETUP #line 417 "eval.l" { return( '\n' ); } FF_BREAK case 25: FF_RULE_SETUP #line 418 "eval.l" { return( fftext[0] ); } FF_BREAK case 26: FF_RULE_SETUP #line 419 "eval.l" ECHO; FF_BREAK case FF_STATE_EOF(INITIAL): ffterminate(); case FF_END_OF_BUFFER: { /* Amount of text matched not including the EOB char. */ int ff_amount_of_matched_text = (int) (ff_cp - fftext_ptr) - 1; /* Undo the effects of FF_DO_BEFORE_ACTION. */ *ff_cp = ff_hold_char; FF_RESTORE_FF_MORE_OFFSET if ( ff_current_buffer->ff_buffer_status == FF_BUFFER_NEW ) { /* We're scanning a new file or input source. It's * possible that this happened because the user * just pointed ffin at a new source and called * fflex(). If so, then we have to assure * consistency between ff_current_buffer and our * globals. Here is the right place to do so, because * this is the first action (other than possibly a * back-up) that will match for the new input source. */ ff_n_chars = ff_current_buffer->ff_n_chars; ff_current_buffer->ff_input_file = ffin; ff_current_buffer->ff_buffer_status = FF_BUFFER_NORMAL; } /* Note that here we test for ff_c_buf_p "<=" to the position * of the first EOB in the buffer, since ff_c_buf_p will * already have been incremented past the NUL character * (since all states make transitions on EOB to the * end-of-buffer state). Contrast this with the test * in input(). */ if ( ff_c_buf_p <= &ff_current_buffer->ff_ch_buf[ff_n_chars] ) { /* This was really a NUL. */ ff_state_type ff_next_state; ff_c_buf_p = fftext_ptr + ff_amount_of_matched_text; ff_current_state = ff_get_previous_state(); /* Okay, we're now positioned to make the NUL * transition. We couldn't have * ff_get_previous_state() go ahead and do it * for us because it doesn't know how to deal * with the possibility of jamming (and we don't * want to build jamming into it because then it * will run more slowly). */ ff_next_state = ff_try_NUL_trans( ff_current_state ); ff_bp = fftext_ptr + FF_MORE_ADJ; if ( ff_next_state ) { /* Consume the NUL. */ ff_cp = ++ff_c_buf_p; ff_current_state = ff_next_state; goto ff_match; } else { ff_cp = ff_c_buf_p; goto ff_find_action; } } else switch ( ff_get_next_buffer() ) { case EOB_ACT_END_OF_FILE: { ff_did_buffer_switch_on_eof = 0; if ( ffwrap() ) { /* Note: because we've taken care in * ff_get_next_buffer() to have set up * fftext, we can now set up * ff_c_buf_p so that if some total * hoser (like flex itself) wants to * call the scanner after we return the * FF_NULL, it'll still work - another * FF_NULL will get returned. */ ff_c_buf_p = fftext_ptr + FF_MORE_ADJ; ff_act = FF_STATE_EOF(FF_START); goto do_action; } else { if ( ! ff_did_buffer_switch_on_eof ) FF_NEW_FILE; } break; } case EOB_ACT_CONTINUE_SCAN: ff_c_buf_p = fftext_ptr + ff_amount_of_matched_text; ff_current_state = ff_get_previous_state(); ff_cp = ff_c_buf_p; ff_bp = fftext_ptr + FF_MORE_ADJ; goto ff_match; case EOB_ACT_LAST_MATCH: ff_c_buf_p = &ff_current_buffer->ff_ch_buf[ff_n_chars]; ff_current_state = ff_get_previous_state(); ff_cp = ff_c_buf_p; ff_bp = fftext_ptr + FF_MORE_ADJ; goto ff_find_action; } break; } default: FF_FATAL_ERROR( "fatal flex scanner internal error--no action found" ); } /* end of action switch */ } /* end of scanning one token */ } /* end of fflex */ /* ff_get_next_buffer - try to read in a new buffer * * Returns a code representing an action: * EOB_ACT_LAST_MATCH - * EOB_ACT_CONTINUE_SCAN - continue scanning from current position * EOB_ACT_END_OF_FILE - end of file */ static int ff_get_next_buffer() { register char *dest = ff_current_buffer->ff_ch_buf; register char *source = fftext_ptr; register int number_to_move, i; int ret_val; if ( ff_c_buf_p > &ff_current_buffer->ff_ch_buf[ff_n_chars + 1] ) FF_FATAL_ERROR( "fatal flex scanner internal error--end of buffer missed" ); if ( ff_current_buffer->ff_fill_buffer == 0 ) { /* Don't try to fill the buffer, so this is an EOF. */ if ( ff_c_buf_p - fftext_ptr - FF_MORE_ADJ == 1 ) { /* We matched a single character, the EOB, so * treat this as a final EOF. */ return EOB_ACT_END_OF_FILE; } else { /* We matched some text prior to the EOB, first * process it. */ return EOB_ACT_LAST_MATCH; } } /* Try to read more data. */ /* First move last chars to start of buffer. */ number_to_move = (int) (ff_c_buf_p - fftext_ptr) - 1; for ( i = 0; i < number_to_move; ++i ) *(dest++) = *(source++); if ( ff_current_buffer->ff_buffer_status == FF_BUFFER_EOF_PENDING ) /* don't do the read, it's not guaranteed to return an EOF, * just force an EOF */ ff_current_buffer->ff_n_chars = ff_n_chars = 0; else { int num_to_read = ff_current_buffer->ff_buf_size - number_to_move - 1; while ( num_to_read <= 0 ) { /* Not enough room in the buffer - grow it. */ #ifdef FF_USES_REJECT FF_FATAL_ERROR( "input buffer overflow, can't enlarge buffer because scanner uses REJECT" ); #else /* just a shorter name for the current buffer */ FF_BUFFER_STATE b = ff_current_buffer; int ff_c_buf_p_offset = (int) (ff_c_buf_p - b->ff_ch_buf); if ( b->ff_is_our_buffer ) { int new_size = b->ff_buf_size * 2; if ( new_size <= 0 ) b->ff_buf_size += b->ff_buf_size / 8; else b->ff_buf_size *= 2; b->ff_ch_buf = (char *) /* Include room in for 2 EOB chars. */ ff_flex_realloc( (void *) b->ff_ch_buf, b->ff_buf_size + 2 ); } else /* Can't grow it, we don't own it. */ b->ff_ch_buf = 0; if ( ! b->ff_ch_buf ) FF_FATAL_ERROR( "fatal error - scanner input buffer overflow" ); ff_c_buf_p = &b->ff_ch_buf[ff_c_buf_p_offset]; num_to_read = ff_current_buffer->ff_buf_size - number_to_move - 1; #endif } if ( num_to_read > FF_READ_BUF_SIZE ) num_to_read = FF_READ_BUF_SIZE; /* Read in more data. */ FF_INPUT( (&ff_current_buffer->ff_ch_buf[number_to_move]), ff_n_chars, num_to_read ); ff_current_buffer->ff_n_chars = ff_n_chars; } if ( ff_n_chars == 0 ) { if ( number_to_move == FF_MORE_ADJ ) { ret_val = EOB_ACT_END_OF_FILE; ffrestart( ffin ); } else { ret_val = EOB_ACT_LAST_MATCH; ff_current_buffer->ff_buffer_status = FF_BUFFER_EOF_PENDING; } } else ret_val = EOB_ACT_CONTINUE_SCAN; ff_n_chars += number_to_move; ff_current_buffer->ff_ch_buf[ff_n_chars] = FF_END_OF_BUFFER_CHAR; ff_current_buffer->ff_ch_buf[ff_n_chars + 1] = FF_END_OF_BUFFER_CHAR; fftext_ptr = &ff_current_buffer->ff_ch_buf[0]; return ret_val; } /* ff_get_previous_state - get the state just before the EOB char was reached */ static ff_state_type ff_get_previous_state() { register ff_state_type ff_current_state; register char *ff_cp; ff_current_state = ff_start; for ( ff_cp = fftext_ptr + FF_MORE_ADJ; ff_cp < ff_c_buf_p; ++ff_cp ) { register FF_CHAR ff_c = (*ff_cp ? ff_ec[FF_SC_TO_UI(*ff_cp)] : 1); if ( ff_accept[ff_current_state] ) { ff_last_accepting_state = ff_current_state; ff_last_accepting_cpos = ff_cp; } while ( ff_chk[ff_base[ff_current_state] + ff_c] != ff_current_state ) { ff_current_state = (int) ff_def[ff_current_state]; if ( ff_current_state >= 160 ) ff_c = ff_meta[(unsigned int) ff_c]; } ff_current_state = ff_nxt[ff_base[ff_current_state] + (unsigned int) ff_c]; } return ff_current_state; } /* ff_try_NUL_trans - try to make a transition on the NUL character * * synopsis * next_state = ff_try_NUL_trans( current_state ); */ #ifdef FF_USE_PROTOS static ff_state_type ff_try_NUL_trans( ff_state_type ff_current_state ) #else static ff_state_type ff_try_NUL_trans( ff_current_state ) ff_state_type ff_current_state; #endif { register int ff_is_jam; register char *ff_cp = ff_c_buf_p; register FF_CHAR ff_c = 1; if ( ff_accept[ff_current_state] ) { ff_last_accepting_state = ff_current_state; ff_last_accepting_cpos = ff_cp; } while ( ff_chk[ff_base[ff_current_state] + ff_c] != ff_current_state ) { ff_current_state = (int) ff_def[ff_current_state]; if ( ff_current_state >= 160 ) ff_c = ff_meta[(unsigned int) ff_c]; } ff_current_state = ff_nxt[ff_base[ff_current_state] + (unsigned int) ff_c]; ff_is_jam = (ff_current_state == 159); return ff_is_jam ? 0 : ff_current_state; } #ifndef FF_NO_UNPUT #ifdef FF_USE_PROTOS static void ffunput( int c, register char *ff_bp ) #else static void ffunput( c, ff_bp ) int c; register char *ff_bp; #endif { register char *ff_cp = ff_c_buf_p; /* undo effects of setting up fftext */ *ff_cp = ff_hold_char; if ( ff_cp < ff_current_buffer->ff_ch_buf + 2 ) { /* need to shift things up to make room */ /* +2 for EOB chars. */ register int number_to_move = ff_n_chars + 2; register char *dest = &ff_current_buffer->ff_ch_buf[ ff_current_buffer->ff_buf_size + 2]; register char *source = &ff_current_buffer->ff_ch_buf[number_to_move]; while ( source > ff_current_buffer->ff_ch_buf ) *--dest = *--source; ff_cp += (int) (dest - source); ff_bp += (int) (dest - source); ff_current_buffer->ff_n_chars = ff_n_chars = ff_current_buffer->ff_buf_size; if ( ff_cp < ff_current_buffer->ff_ch_buf + 2 ) FF_FATAL_ERROR( "flex scanner push-back overflow" ); } *--ff_cp = (char) c; fftext_ptr = ff_bp; ff_hold_char = *ff_cp; ff_c_buf_p = ff_cp; } #endif /* ifndef FF_NO_UNPUT */ #ifdef __cplusplus static int ffinput() #else static int input() #endif { int c; *ff_c_buf_p = ff_hold_char; if ( *ff_c_buf_p == FF_END_OF_BUFFER_CHAR ) { /* ff_c_buf_p now points to the character we want to return. * If this occurs *before* the EOB characters, then it's a * valid NUL; if not, then we've hit the end of the buffer. */ if ( ff_c_buf_p < &ff_current_buffer->ff_ch_buf[ff_n_chars] ) /* This was really a NUL. */ *ff_c_buf_p = '\0'; else { /* need more input */ int offset = ff_c_buf_p - fftext_ptr; ++ff_c_buf_p; switch ( ff_get_next_buffer() ) { case EOB_ACT_LAST_MATCH: /* This happens because ff_g_n_b() * sees that we've accumulated a * token and flags that we need to * try matching the token before * proceeding. But for input(), * there's no matching to consider. * So convert the EOB_ACT_LAST_MATCH * to EOB_ACT_END_OF_FILE. */ /* Reset buffer status. */ ffrestart( ffin ); /* fall through */ case EOB_ACT_END_OF_FILE: { if ( ffwrap() ) return EOF; if ( ! ff_did_buffer_switch_on_eof ) FF_NEW_FILE; #ifdef __cplusplus return ffinput(); #else return input(); #endif } case EOB_ACT_CONTINUE_SCAN: ff_c_buf_p = fftext_ptr + offset; break; } } } c = *(unsigned char *) ff_c_buf_p; /* cast for 8-bit char's */ *ff_c_buf_p = '\0'; /* preserve fftext */ ff_hold_char = *++ff_c_buf_p; return c; } #ifdef FF_USE_PROTOS void ffrestart( FILE *input_file ) #else void ffrestart( input_file ) FILE *input_file; #endif { if ( ! ff_current_buffer ) ff_current_buffer = ff_create_buffer( ffin, FF_BUF_SIZE ); ff_init_buffer( ff_current_buffer, input_file ); ff_load_buffer_state(); } #ifdef FF_USE_PROTOS void ff_switch_to_buffer( FF_BUFFER_STATE new_buffer ) #else void ff_switch_to_buffer( new_buffer ) FF_BUFFER_STATE new_buffer; #endif { if ( ff_current_buffer == new_buffer ) return; if ( ff_current_buffer ) { /* Flush out information for old buffer. */ *ff_c_buf_p = ff_hold_char; ff_current_buffer->ff_buf_pos = ff_c_buf_p; ff_current_buffer->ff_n_chars = ff_n_chars; } ff_current_buffer = new_buffer; ff_load_buffer_state(); /* We don't actually know whether we did this switch during * EOF (ffwrap()) processing, but the only time this flag * is looked at is after ffwrap() is called, so it's safe * to go ahead and always set it. */ ff_did_buffer_switch_on_eof = 1; } #ifdef FF_USE_PROTOS void ff_load_buffer_state( void ) #else void ff_load_buffer_state() #endif { ff_n_chars = ff_current_buffer->ff_n_chars; fftext_ptr = ff_c_buf_p = ff_current_buffer->ff_buf_pos; ffin = ff_current_buffer->ff_input_file; ff_hold_char = *ff_c_buf_p; } #ifdef FF_USE_PROTOS FF_BUFFER_STATE ff_create_buffer( FILE *file, int size ) #else FF_BUFFER_STATE ff_create_buffer( file, size ) FILE *file; int size; #endif { FF_BUFFER_STATE b; b = (FF_BUFFER_STATE) ff_flex_alloc( sizeof( struct ff_buffer_state ) ); if ( ! b ) FF_FATAL_ERROR( "out of dynamic memory in ff_create_buffer()" ); b->ff_buf_size = size; /* ff_ch_buf has to be 2 characters longer than the size given because * we need to put in 2 end-of-buffer characters. */ b->ff_ch_buf = (char *) ff_flex_alloc( b->ff_buf_size + 2 ); if ( ! b->ff_ch_buf ) FF_FATAL_ERROR( "out of dynamic memory in ff_create_buffer()" ); b->ff_is_our_buffer = 1; ff_init_buffer( b, file ); return b; } #ifdef FF_USE_PROTOS void ff_delete_buffer( FF_BUFFER_STATE b ) #else void ff_delete_buffer( b ) FF_BUFFER_STATE b; #endif { if ( ! b ) return; if ( b == ff_current_buffer ) ff_current_buffer = (FF_BUFFER_STATE) 0; if ( b->ff_is_our_buffer ) ff_flex_free( (void *) b->ff_ch_buf ); ff_flex_free( (void *) b ); } #ifndef FF_ALWAYS_INTERACTIVE #ifndef FF_NEVER_INTERACTIVE extern int isatty FF_PROTO(( int )); #endif #endif #ifdef FF_USE_PROTOS void ff_init_buffer( FF_BUFFER_STATE b, FILE *file ) #else void ff_init_buffer( b, file ) FF_BUFFER_STATE b; FILE *file; #endif { ff_flush_buffer( b ); b->ff_input_file = file; b->ff_fill_buffer = 1; #if FF_ALWAYS_INTERACTIVE b->ff_is_interactive = 1; #else #if FF_NEVER_INTERACTIVE b->ff_is_interactive = 0; #else b->ff_is_interactive = file ? (isatty( fileno(file) ) > 0) : 0; #endif #endif } #ifdef FF_USE_PROTOS void ff_flush_buffer( FF_BUFFER_STATE b ) #else void ff_flush_buffer( b ) FF_BUFFER_STATE b; #endif { if ( ! b ) return; b->ff_n_chars = 0; /* We always need two end-of-buffer characters. The first causes * a transition to the end-of-buffer state. The second causes * a jam in that state. */ b->ff_ch_buf[0] = FF_END_OF_BUFFER_CHAR; b->ff_ch_buf[1] = FF_END_OF_BUFFER_CHAR; b->ff_buf_pos = &b->ff_ch_buf[0]; b->ff_at_bol = 1; b->ff_buffer_status = FF_BUFFER_NEW; if ( b == ff_current_buffer ) ff_load_buffer_state(); } #ifndef FF_NO_SCAN_BUFFER #ifdef FF_USE_PROTOS FF_BUFFER_STATE ff_scan_buffer( char *base, ff_size_t size ) #else FF_BUFFER_STATE ff_scan_buffer( base, size ) char *base; ff_size_t size; #endif { FF_BUFFER_STATE b; if ( size < 2 || base[size-2] != FF_END_OF_BUFFER_CHAR || base[size-1] != FF_END_OF_BUFFER_CHAR ) /* They forgot to leave room for the EOB's. */ return 0; b = (FF_BUFFER_STATE) ff_flex_alloc( sizeof( struct ff_buffer_state ) ); if ( ! b ) FF_FATAL_ERROR( "out of dynamic memory in ff_scan_buffer()" ); b->ff_buf_size = size - 2; /* "- 2" to take care of EOB's */ b->ff_buf_pos = b->ff_ch_buf = base; b->ff_is_our_buffer = 0; b->ff_input_file = 0; b->ff_n_chars = b->ff_buf_size; b->ff_is_interactive = 0; b->ff_at_bol = 1; b->ff_fill_buffer = 0; b->ff_buffer_status = FF_BUFFER_NEW; ff_switch_to_buffer( b ); return b; } #endif #ifndef FF_NO_SCAN_STRING #ifdef FF_USE_PROTOS FF_BUFFER_STATE ff_scan_string( ffconst char *ff_str ) #else FF_BUFFER_STATE ff_scan_string( ff_str ) ffconst char *ff_str; #endif { int len; for ( len = 0; ff_str[len]; ++len ) ; return ff_scan_bytes( ff_str, len ); } #endif #ifndef FF_NO_SCAN_BYTES #ifdef FF_USE_PROTOS FF_BUFFER_STATE ff_scan_bytes( ffconst char *bytes, int len ) #else FF_BUFFER_STATE ff_scan_bytes( bytes, len ) ffconst char *bytes; int len; #endif { FF_BUFFER_STATE b; char *buf; ff_size_t n; int i; /* Get memory for full buffer, including space for trailing EOB's. */ n = len + 2; buf = (char *) ff_flex_alloc( n ); if ( ! buf ) FF_FATAL_ERROR( "out of dynamic memory in ff_scan_bytes()" ); for ( i = 0; i < len; ++i ) buf[i] = bytes[i]; buf[len] = buf[len+1] = FF_END_OF_BUFFER_CHAR; b = ff_scan_buffer( buf, n ); if ( ! b ) FF_FATAL_ERROR( "bad buffer in ff_scan_bytes()" ); /* It's okay to grow etc. this buffer, and we should throw it * away when we're done. */ b->ff_is_our_buffer = 1; return b; } #endif #ifndef FF_NO_PUSH_STATE #ifdef FF_USE_PROTOS static void ff_push_state( int new_state ) #else static void ff_push_state( new_state ) int new_state; #endif { if ( ff_start_stack_ptr >= ff_start_stack_depth ) { ff_size_t new_size; ff_start_stack_depth += FF_START_STACK_INCR; new_size = ff_start_stack_depth * sizeof( int ); if ( ! ff_start_stack ) ff_start_stack = (int *) ff_flex_alloc( new_size ); else ff_start_stack = (int *) ff_flex_realloc( (void *) ff_start_stack, new_size ); if ( ! ff_start_stack ) FF_FATAL_ERROR( "out of memory expanding start-condition stack" ); } ff_start_stack[ff_start_stack_ptr++] = FF_START; BEGIN(new_state); } #endif #ifndef FF_NO_POP_STATE static void ff_pop_state() { if ( --ff_start_stack_ptr < 0 ) FF_FATAL_ERROR( "start-condition stack underflow" ); BEGIN(ff_start_stack[ff_start_stack_ptr]); } #endif #ifndef FF_NO_TOP_STATE static int ff_top_state() { return ff_start_stack[ff_start_stack_ptr - 1]; } #endif #ifndef FF_EXIT_FAILURE #define FF_EXIT_FAILURE 2 #endif #ifdef FF_USE_PROTOS static void ff_fatal_error( ffconst char msg[] ) #else static void ff_fatal_error( msg ) char msg[]; #endif { (void) fprintf( stderr, "%s\n", msg ); exit( FF_EXIT_FAILURE ); } /* Redefine ffless() so it works in section 3 code. */ #undef ffless #define ffless(n) \ do \ { \ /* Undo effects of setting up fftext. */ \ fftext[ffleng] = ff_hold_char; \ ff_c_buf_p = fftext + n; \ ff_hold_char = *ff_c_buf_p; \ *ff_c_buf_p = '\0'; \ ffleng = n; \ } \ while ( 0 ) /* Internal utility routines. */ #ifndef fftext_ptr #ifdef FF_USE_PROTOS static void ff_flex_strncpy( char *s1, ffconst char *s2, int n ) #else static void ff_flex_strncpy( s1, s2, n ) char *s1; ffconst char *s2; int n; #endif { register int i; for ( i = 0; i < n; ++i ) s1[i] = s2[i]; } #endif #ifdef FF_NEED_STRLEN #ifdef FF_USE_PROTOS static int ff_flex_strlen( ffconst char *s ) #else static int ff_flex_strlen( s ) ffconst char *s; #endif { register int n; for ( n = 0; s[n]; ++n ) ; return n; } #endif #ifdef FF_USE_PROTOS static void *ff_flex_alloc( ff_size_t size ) #else static void *ff_flex_alloc( size ) ff_size_t size; #endif { return (void *) malloc( size ); } #ifdef FF_USE_PROTOS static void *ff_flex_realloc( void *ptr, ff_size_t size ) #else static void *ff_flex_realloc( ptr, size ) void *ptr; ff_size_t size; #endif { /* The cast to (char *) in the following accommodates both * implementations that use char* generic pointers, and those * that use void* generic pointers. It works with the latter * because both ANSI C and C++ allow castless assignment from * any pointer type to void*, and deal with argument conversions * as though doing an assignment. */ return (void *) realloc( (char *) ptr, size ); } #ifdef FF_USE_PROTOS static void ff_flex_free( void *ptr ) #else static void ff_flex_free( ptr ) void *ptr; #endif { free( ptr ); } #if FF_MAIN int main() { fflex(); return 0; } #endif #line 419 "eval.l" int ffwrap() { /* MJT -- 13 June 1996 Supplied for compatibility with pre-2.5.1 versions of flex which do not recognize %option noffwrap */ return(1); } /* expr_read is lifted from old ftools.skel. Now we can use any version of flex with no .skel file necessary! MJT - 13 June 1996 keep a memory of how many bytes have been read previously, so that an unlimited-sized buffer can be supported. PDW - 28 Feb 1998 */ static int expr_read(char *buf, int nbytes) { int n; n = 0; if( !gParse.is_eobuf ) { do { buf[n++] = gParse.expr[gParse.index++]; } while ((nlng = varNum; } return( type ); } static int find_variable(char *varName) { int i; if( gParse.nCols ) for( i=0; i c2) return(1); if (c1 == 0) return(0); s1++; s2++; } } int strncasecmp(const char *s1, const char *s2, size_t n) { char c1, c2; for (; n-- ;) { c1 = toupper( *s1 ); c2 = toupper( *s2 ); if (c1 < c2) return(-1); if (c1 > c2) return(1); if (c1 == 0) return(0); s1++; s2++; } return(0); } #endif healpy-1.8.1/cfitsio/putcols.c0000654000175000017530000002523112272000775016715 0ustar zoncaplanck00000000000000/* This file, putcols.c, contains routines that write data elements to */ /* a FITS image or table, of type character string. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffpcls( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of strings to write */ char **array, /* I - array of pointers to strings */ int *status) /* IO - error status */ /* Write an array of string values to a column in the current FITS HDU. */ { int tcode, maxelem, hdutype, nchar; long twidth, incre; long ii, jj, ntodo; LONGLONG repeat, startpos, elemnum, wrtptr, rowlen, rownum, remain, next, tnull; double scale, zero; char tform[20], *blanks; char message[FLEN_ERRMSG]; char snull[20]; /* the FITS null value */ tcolumn *colptr; double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */ char *buffer, *arrayptr; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) { if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); } /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if (colnum < 1 || colnum > (fptr->Fptr)->tfield) { sprintf(message, "Specified column number is out of range: %d", colnum); ffpmsg(message); return(*status = BAD_COL_NUM); } colptr = (fptr->Fptr)->tableptr; /* point to first column */ colptr += (colnum - 1); /* offset to correct column structure */ tcode = colptr->tdatatype; if (tcode == -TSTRING) /* variable length column in a binary table? */ { /* only write a single string; ignore value of firstelem */ nchar = maxvalue(1,strlen(array[0])); /* will write at least 1 char */ /* even if input string is null */ if (ffgcprll( fptr, colnum, firstrow, 1, nchar, 1, &scale, &zero, tform, &twidth, &tcode, &maxelem, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0) return(*status); /* simply move to write position, then write the string */ ffmbyt(fptr, startpos, IGNORE_EOF, status); ffpbyt(fptr, nchar, array[0], status); if (*status > 0) /* test for error during previous write operation */ { sprintf(message, "Error writing to variable length string column (ffpcls)."); ffpmsg(message); } return(*status); } else if (tcode == TSTRING) { if (ffgcprll( fptr, colnum, firstrow, firstelem, nelem, 1, &scale, &zero, tform, &twidth, &tcode, &maxelem, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0) return(*status); /* if string length is greater than a FITS block (2880 char) then must */ /* only write 1 string at a time, to force writein by ffpbyt instead of */ /* ffpbytoff (ffpbytoff can't handle this case) */ if (twidth > IOBUFLEN) { maxelem = 1; incre = twidth; repeat = 1; } blanks = (char *) malloc(twidth); /* string for blank fill values */ if (!blanks) { ffpmsg("Could not allocate memory for string (ffpcls)"); return(*status = ARRAY_TOO_BIG); } for (ii = 0; ii < twidth; ii++) blanks[ii] = ' '; /* fill string with blanks */ remain = nelem; /* remaining number of values to write */ } else return(*status = NOT_ASCII_COL); /*-------------------------------------------------------*/ /* Now write the strings to the FITS column. */ /*-------------------------------------------------------*/ next = 0; /* next element in array to be written */ rownum = 0; /* row number, relative to firstrow */ while (remain) { /* limit the number of pixels to process at one time to the number that will fit in the buffer space or to the number of pixels that remain in the current vector, which ever is smaller. */ ntodo = (long) minvalue(remain, maxelem); ntodo = (long) minvalue(ntodo, (repeat - elemnum)); wrtptr = startpos + (rownum * rowlen) + (elemnum * incre); ffmbyt(fptr, wrtptr, IGNORE_EOF, status); /* move to write position */ buffer = (char *) cbuff; /* copy the user's strings into the buffer */ for (ii = 0; ii < ntodo; ii++) { arrayptr = array[next]; for (jj = 0; jj < twidth; jj++) /* copy the string, char by char */ { if (*arrayptr) { *buffer = *arrayptr; buffer++; arrayptr++; } else break; } for (;jj < twidth; jj++) /* fill field with blanks, if needed */ { *buffer = ' '; buffer++; } next++; } /* write the buffer full of strings to the FITS file */ if (incre == twidth) ffpbyt(fptr, ntodo * twidth, cbuff, status); else ffpbytoff(fptr, twidth, ntodo, incre - twidth, cbuff, status); if (*status > 0) /* test for error during previous write operation */ { sprintf(message, "Error writing elements %.0f thru %.0f of input data array (ffpcls).", (double) (next+1), (double) (next+ntodo)); ffpmsg(message); if (blanks) free(blanks); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain -= ntodo; if (remain) { elemnum += ntodo; if (elemnum == repeat) /* completed a row; start on next row */ { elemnum = 0; rownum++; } } } /* End of main while Loop */ if (blanks) free(blanks); return(*status); } /*--------------------------------------------------------------------------*/ int ffpcns( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ char **array, /* I - array of values to write */ char *nulvalue, /* I - string representing a null value */ int *status) /* IO - error status */ /* Write an array of elements to the specified column of a table. Any input pixels flagged as null will be replaced by the appropriate null value in the output FITS file. */ { long repeat, width; LONGLONG ngood = 0, nbad = 0, ii; LONGLONG first, fstelm, fstrow; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) { if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); } /* get the vector repeat length of the column */ ffgtcl(fptr, colnum, NULL, &repeat, &width, status); if ((fptr->Fptr)->hdutype == BINARY_TBL) repeat = repeat / width; /* convert from chars to unit strings */ /* absolute element number in the column */ first = (firstrow - 1) * repeat + firstelem; for (ii = 0; ii < nelem; ii++) { if (strcmp(nulvalue, array[ii])) /* is this a good pixel? */ { if (nbad) /* write previous string of bad pixels */ { fstelm = ii - nbad + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (ffpclu(fptr, colnum, fstrow, fstelm, nbad, status) > 0) return(*status); nbad=0; } ngood = ngood +1; /* the consecutive number of good pixels */ } else { if (ngood) /* write previous string of good pixels */ { fstelm = ii - ngood + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (ffpcls(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status) > 0) return(*status); ngood=0; } nbad = nbad +1; /* the consecutive number of bad pixels */ } } /* finished loop; now just write the last set of pixels */ if (ngood) /* write last string of good pixels */ { fstelm = ii - ngood + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ ffpcls(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status); } else if (nbad) /* write last string of bad pixels */ { fstelm = ii - nbad + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ ffpclu(fptr, colnum, fstrow, fstelm, nbad, status); } return(*status); } healpy-1.8.1/cfitsio/iter_c.fit0000654000175000017530000026400012272000775017030 0ustar zoncaplanck00000000000000SIMPLE = T / file does conform to FITS standard BITPIX = 32 / number of bits per data pixel NAXIS = 0 / number of data axes EXTEND = T / FITS dataset may contain extensions COMMENT FITS (Flexible Image Transport System) format defined in Astronomy andCOMMENT Astrophysics Supplement Series v44/p363, v44/p371, v73/p359, v73/p365.COMMENT Contact the NASA Science Office of Standards and Technology for the COMMENT FITS Definition document #100 and other FITS information. END XTENSION= 'BINTABLE' / FITS 3D BINARY TABLE BITPIX = 8 / Binary data NAXIS = 2 / Table is a matrix NAXIS1 = 16 / Width of table in bytes NAXIS2 = 5000 / Number of entries in table PCOUNT = 0 / Random parameter count GCOUNT = 1 / Group count TFIELDS = 5 / Number of fields in each row EXTNAME = 'EVENTS ' / Table name EXTVER = 1 / Version number of table TFORM1 = '1I ' / Data type for field TTYPE1 = 'X ' / Label for field TUNIT1 = ' ' / Physical units for field TFORM2 = '1I ' / Data type for field TTYPE2 = 'Y ' / Label for field TUNIT2 = ' ' / Physical units for field TFORM3 = '1I ' / Data type for field TTYPE3 = 'PHA ' / Label for field TUNIT3 = ' ' / Physical units for field TFORM4 = '1D ' / Data type for field TTYPE4 = 'TIME ' / Label for field TUNIT4 = ' ' / Physical units for field TFORM5 = '1I ' / Data type for field TTYPE5 = 'DY ' / Label for field TUNIT5 = ' ' / Physical units for field TLMIN1 = 1 TLMAX1 = 15360 TLMIN2 = 1 TLMAX2 = 15360 NAXLEN = 2 / Number of QPOE axes AXLEN1 = 15360 / Dim. of qpoe axis 1 AXLEN2 = 15360 / Dim. of qpoe axis 2 TELESCOP= 'ROSAT ' / telescope (mission) name INSTRUME= 'PSPC ' / instrument (detector) name RADECSYS= 'FK5 ' / WCS for this file (e.g. Fk4) EQUINOX = 2.000000E3 / equinox (epoch) for WCS CTYPE1 = 'RA---TAN' / axis type for dim. 1 (e.g. RA---TAN) CTYPE2 = 'DEC--TAN' / axis type for dim. 2 (e.g. DEC--TAN) CRVAL1 = 8.588000E1 / sky coord of 1st axis (deg.) CRVAL2 = 6.926986E1 / sky coord of 2nd axis (deg.) CDELT1 = -1.388889E-4 / x degrees per pixel CDELT2 = 1.388889E-4 / y degrees per pixel CRPIX1 = 7.680000E3 / x pixel of tangent plane direction CRPIX2 = 7.680000E3 / y pixel of tangent plane direction CROTA2 = 0.000000E0 / rotation angle (degrees) MJD-OBS = 4.905444E4 / MJD of start of obs. DATE-OBS= '08/03/93' / date of observation start TIME-OBS= '10:30:32' / time of observation start DATE-END= '11/03/93' / date of observation end TIME-END= '05:02:18' / time of observation end XS-OBSID= 'US800282P.N1 ' / observation ID XS-SEQPI= 'ROTS, DR., ARNOLD,H. ' / XS-SUBIN= 2 / subinstrument id XS-OBSV = 800282 / observer id XS-CNTRY= 'USA ' / country where data was processed XS-FILTR= 0 / filter id: 0=none, 1=PSPC boron XS-MODE = 1 / pointing mode: 1=point,2=slew,3=scan XS-DANG = 0.000000E0 / detector roll angle (degrees) XS-MJDRD= 48043 / integer portion of mjd for SC clock start XS-MJDRF= 8.797453703700740E-1 / fractional portion of mjd for SC clock start XS-EVREF= 0 / day offset from mjdrday to evenr start times XS-TBASE= 0.000000000000000E0 / seconds from s/c clock start to obs start XS-ONTI = 1.476600000000000E4 / on time (seconds) XS-LIVTI= 1.476600000000000E4 / live time (seconds) XS-DTCOR= 1.000000E0 / dead time correction XS-BKDEN= 0.000000E0 / bkgd density cts/arcmin**2 XS-MINLT= 0.000000E0 / min live time factor XS-MAXLT= 0.000000E0 / max live time factor XS-XAOPT= 0.000000E0 / avg. opt. axis x in degrees from tangent planXS-YAOPT= 0.000000E0 / avg. opt. axis y in degrees from tangent planXS-XAOFF= 0.000000E0 / avg x aspect offset (degrees) XS-YAOFF= 0.000000E0 / avg y aspect offset (degrees) XS-RAROT= 0.000000E0 / avg aspect rotation (degrees) XS-XARMS= 0.000000E0 / avg x aspect RMS (arcsec) XS-YARMS= 0.000000E0 / avg y aspect RMS (arcsec) XS-RARMS= 0.000000E0 / avg aspect rotation RMS (degrees) XS-RAPT = 8.588000E1 / nominal right ascension (degrees) XS-DECPT= 6.926986E1 / nominal declination (degrees) XS-XPT = 4096 / target pointing direction (pixels) XS-YPT = 4096 / target pointing direction (pixels) XS-XDET = 8192 / x dimen. of detector XS-YDET = 8192 / y dimen. of detector XS-FOV = 0 / field of view (degrees) XS-INPXX= 2.595021E-4 / original degrees per pixel XS-INPXY= 2.595021E-4 / original degrees per pixel XS-XDOPT= 4.119000E3 / detector opt. axis x in detector pixels XS-YDOPT= 3.929000E3 / detector opt. axis y in detector pixels XS-CHANS= 256 / pha channels TDISP4 = 'I12 ' HISTORY modified by pence on Thu Apr 24 15:04:08 EDT 1997 HISTORY modified by pence on Thu Apr 24 15:07:24 EDT 1997 TDISP5 = 'I4 ' HISTORY modified by pence on Thu Apr 24 16:06:08 EDT 1997 HISTORY File modified by user 'pence' with fv on 97-11-25T14:34:58 HISTORY File modified by user 'pence' with fv on 98-01-12T14:03:09 HISTORY File modified by user 'pence' with fv on 98-02-06T15:18:24 END óµA”ÑU=àq1±&ØA”ÑUAÀ =#t6A”ÑVo€ö(²RA”ÑX/@¸)P#½FA”ÑX‰@ Y[ ƒA”ÑXÕÀê ,~ A”ÑY” @ SÁ?A”ÑZ¢ W^A”ÑZÄ€Ó},ŸaA”ÑZï@¨LzA”Ñ[": $÷A”Ñ^à Nr€ A”Ñ_MÀuëA”Ñ_†@˜'êìnA”Ñ`g@ ÷  NA”Ñ`§àç $þA”Ñaƒ@ ª°*Ÿ A”Ña¡¢+91í2A”Ña¦À©% ¢A”Ñb tB( A”ÑbD@ Ñ*vhA”ÑbÐ I X,4A”ÑbÛ@O¤®A”Ñc7e$¬.+ A”Ñc] 3 OA”ÑdW2+ý© A”Ñd†€¹*2ÊIA”Ñd¦ C é )A”Ñd×`ö[#A”Ñf$à™&•^A”Ñf® M ƒA”ÑgoÀÙ“ÑxA”ÑgÀ å!%ÚA”ÑjS -`hA”ÑkàÄ\× A”Ñk|À"0ç$SA”Ñl€@ Œ?-aTA”Ñl×@à f)ü A”Ñm~às1\#âA”Ñm¨` Á ä A”Ñmà`-V %ÍA”Ñnü œ ½¿ A”Ñq×`¶5í A”Ñr{€©Ê “-A”ÑrÆàæ#*)ë A”ÑrÛ Ps €A”Ñsg€›'Ú A”ÑtìÅyA”Ñu@ PwXA”Ñv`à#c A”Ñyã@3+ËKA”Ñ{/ §!” \/A”Ñ{Q@ u,D bA”Ñ{`÷ Ä: A”Ñ{ó@g"Ç'*%A”Ñ|À Ä M*¨SA”Ñ} '2^Q A”Ñ}s f ›“A”Ñ~0`×"0YA”Ñ~ØÀêŠ eA”Ñ Àë%ÄDIA”Ñ`!v3A”Ñ}ÀT"»-A”Ñ­€½î*¼ A”Ñ€þ X,A N A”Ñ„¿`ƒ($_A”Ñ„Éà î¬éOA”Ñ„Ü`ëi :A”Ñ…Ï v*¦-DA”ц´€ ç0A”цï Û y A”чÀš§ A”чL ƒ$¨ )oA”ч™À)¢-bA”чæ@ ÝA”шâà( Z(A”Ñ‹&@+ A”ÑŒý  ¬#±kA”Ñ /91Ö A”ÑŽh ‚¥¹4A”ÑŽo  'ASA”Ñ޾,/B%vA”Ñ–à íÙ3œ A”Ñji!?åA”Ѥ€ë{+×A”ÑÀf."D:A”Ñê ¼l3A”Ñõ€üP'× A”Ñ‘®` Ð1° A”Ñ’k DÝzA”Ñ”&…=A”Ñ•‹ vy#  A”Ñ–@ Q3&A”Ñ–ˆÀ h'À3&0A”Ñ–À á(A”Ñ™àA/ÑÄ A”Ñš€¡ï! ~A”Ñš: Öˆ‹A”Ñš¬@èSA”Ñ›& ˜ V2A”Ñžy *Ì&8A”ÑŸ‘@ ØÍZA”Ñ v`# YÁ¡A”Ñ£L€”S×A”Ñ£a@ç A”Ѥ€Í1,PA”Ѥn ’/3xwA”ѤÉÍ7 PA”ѥ꠿*E A”Ѧ« <3ŠëA”ѧ ¸ÊpA”ѧ=`? 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A”ÑZÄÍÀï1ºuA”ÑZÄ× ÿ0 Y A”ÑZÆ*` ë3¢EA”ÑZƪ` F A”ÑZÈEàhealpy-1.8.1/cfitsio/testprog.tpt0000654000175000017530000000061412272000775017456 0ustar zoncaplanck00000000000000tmpcard1 1001 this is the 1st template card tmpcard2 ABCD this is the 2nd template card tmpcard3 1001.23 this is the 3rd template card tmpcard4 1001.45 this is the 4rd template card comment this is the 5th template card history this is the 6th template card tmpcard7 = / comment for null keyword -tmpcard1 tmpcarda change the name of tmpcard1 -tmpcard4 end junk will be ignored healpy-1.8.1/cfitsio/cfortran.h0000654000175000017530000040757212272000775017063 0ustar zoncaplanck00000000000000/* cfortran.h 4.4 */ /* http://www-zeus.desy.de/~burow/cfortran/ */ /* Burkhard Burow burow@desy.de 1990 - 2002. */ #ifndef __CFORTRAN_LOADED #define __CFORTRAN_LOADED /* THIS FILE IS PROPERTY OF BURKHARD BUROW. IF YOU ARE USING THIS FILE YOU SHOULD ALSO HAVE ACCESS TO CFORTRAN.DOC WHICH PROVIDES TERMS FOR USING, MODIFYING, COPYING AND DISTRIBUTING THE CFORTRAN.H PACKAGE. */ /* The following modifications were made by the authors of CFITSIO or by me. * They are flagged below with CFITSIO, the author's initials, or KMCCARTY. * PDW = Peter Wilson * DM = Doug Mink * LEB = Lee E Brotzman * MR = Martin Reinecke * WDP = William D Pence * -- Kevin McCarty, for Debian (19 Dec. 2005) */ /******* Modifications: Oct 1997: Changed symbol name extname to appendus (PDW/HSTX) (Conflicted with a common variable name in FTOOLS) Nov 1997: If g77Fortran defined, also define f2cFortran (PDW/HSTX) Feb 1998: Let VMS see the NUM_ELEMS code. Lets programs treat single strings as vectors with single elements Nov 1999: If macintoxh defined, also define f2cfortran (for Mac OS-X) Apr 2000: If WIN32 defined, also define PowerStationFortran and VISUAL_CPLUSPLUS (Visual C++) Jun 2000: If __GNUC__ and linux defined, also define f2cFortran (linux/gcc environment detection) Apr 2002: If __CYGWIN__ is defined, also define f2cFortran Nov 2002: If __APPLE__ defined, also define f2cfortran (for Mac OS-X) Nov 2003: If __INTEL_COMPILER or INTEL_COMPILER defined, also define f2cFortran (KMCCARTY) Dec 2005: If f2cFortran is defined, enforce REAL functions in FORTRAN returning "double" in C. This was one of the items on Burkhard's TODO list. (KMCCARTY) Dec 2005: Modifications to support 8-byte integers. (MR) USE AT YOUR OWN RISK! Feb 2006 Added logic to typedef the symbol 'LONGLONG' to an appropriate intrinsic 8-byte integer datatype (WDP) Apr 2006: Modifications to support gfortran (and g77 with -fno-f2c flag) since by default it returns "float" for FORTRAN REAL function. (KMCCARTY) May 2008: Revert commenting out of "extern" in COMMON_BLOCK_DEF macro. Add braces around do-nothing ";" in 3 empty while blocks to get rid of compiler warnings. Thanks to ROOT developers Jacek Holeczek and Rene Brun for these suggestions. (KMCCARTY) Dec 2008 Added typedef for LONGLONG to support Borland compiler (WDP) *******/ /* Avoid symbols already used by compilers and system *.h: __ - OSF1 zukal06 V3.0 347 alpha, cc -c -std1 cfortest.c */ /* Determine what 8-byte integer data type is available. 'long long' is now supported by most compilers, but older MS Visual C++ compilers before V7.0 use '__int64' instead. (WDP) */ #ifndef LONGLONG_TYPE /* this may have been previously defined */ #if defined(_MSC_VER) /* Microsoft Visual C++ */ #if (_MSC_VER < 1300) /* versions earlier than V7.0 do not have 'long long' */ typedef __int64 LONGLONG; #else /* newer versions do support 'long long' */ typedef long long LONGLONG; #endif #elif defined( __BORLANDC__) /* (WDP) for the free Borland compiler, in particular */ typedef __int64 LONGLONG; #else typedef long long LONGLONG; #endif #define LONGLONG_TYPE #endif /* First prepare for the C compiler. */ #ifndef ANSI_C_preprocessor /* i.e. user can override. */ #ifdef __CF__KnR #define ANSI_C_preprocessor 0 #else #ifdef __STDC__ #define ANSI_C_preprocessor 1 #else #define _cfleft 1 #define _cfright #define _cfleft_cfright 0 #define ANSI_C_preprocessor _cfleft/**/_cfright #endif #endif #endif #if ANSI_C_preprocessor #define _0(A,B) A##B #define _(A,B) _0(A,B) /* see cat,xcat of K&R ANSI C p. 231 */ #define _2(A,B) A##B /* K&R ANSI C p.230: .. identifier is not replaced */ #define _3(A,B,C) _(A,_(B,C)) #else /* if it turns up again during rescanning. */ #define _(A,B) A/**/B #define _2(A,B) A/**/B #define _3(A,B,C) A/**/B/**/C #endif #if (defined(vax)&&defined(unix)) || (defined(__vax__)&&defined(__unix__)) #define VAXUltrix #endif #include /* NULL [in all machines stdio.h] */ #include /* strlen, memset, memcpy, memchr. */ #if !( defined(VAXUltrix) || defined(sun) || (defined(apollo)&&!defined(__STDCPP__)) ) #include /* malloc,free */ #else #include /* Had to be removed for DomainOS h105 10.4 sys5.3 425t*/ #ifdef apollo #define __CF__APOLLO67 /* __STDCPP__ is in Apollo 6.8 (i.e. ANSI) and onwards */ #endif #endif #if !defined(__GNUC__) && !defined(__sun) && (defined(sun)||defined(VAXUltrix)||defined(lynx)) #define __CF__KnR /* Sun, LynxOS and VAX Ultrix cc only supports K&R. */ /* Manually define __CF__KnR for HP if desired/required.*/ #endif /* i.e. We will generate Kernighan and Ritchie C. */ /* Note that you may define __CF__KnR before #include cfortran.h, in order to generate K&R C instead of the default ANSI C. The differences are mainly in the function prototypes and declarations. All machines, except the Apollo, work with either style. The Apollo's argument promotion rules require ANSI or use of the obsolete std_$call which we have not implemented here. Hence on the Apollo, only C calling FORTRAN subroutines will work using K&R style.*/ /* Remainder of cfortran.h depends on the Fortran compiler. */ /* 11/29/2003 (KMCCARTY): add *INTEL_COMPILER symbols here */ /* 04/05/2006 (KMCCARTY): add gFortran symbol here */ #if defined(CLIPPERFortran) || defined(pgiFortran) || defined(__INTEL_COMPILER) || defined(INTEL_COMPILER) || defined(gFortran) #define f2cFortran #endif /* VAX/VMS does not let us \-split long #if lines. */ /* Split #if into 2 because some HP-UX can't handle long #if */ #if !(defined(NAGf90Fortran)||defined(f2cFortran)||defined(hpuxFortran)||defined(apolloFortran)||defined(sunFortran)||defined(IBMR2Fortran)||defined(CRAYFortran)) #if !(defined(mipsFortran)||defined(DECFortran)||defined(vmsFortran)||defined(CONVEXFortran)||defined(PowerStationFortran)||defined(AbsoftUNIXFortran)||defined(AbsoftProFortran)||defined(SXFortran)) /* If no Fortran compiler is given, we choose one for the machines we know. */ #if defined(lynx) || defined(VAXUltrix) #define f2cFortran /* Lynx: Only support f2c at the moment. VAXUltrix: f77 behaves like f2c. Support f2c or f77 with gcc, vcc with f2c. f77 with vcc works, missing link magic for f77 I/O.*/ #endif /* 04/13/00 DM (CFITSIO): Add these lines for NT */ /* with PowerStationFortran and and Visual C++ */ #if defined(WIN32) && !defined(__CYGWIN__) #define PowerStationFortran #define VISUAL_CPLUSPLUS #endif #if defined(g77Fortran) /* 11/03/97 PDW (CFITSIO) */ #define f2cFortran #endif #if defined(__CYGWIN__) /* 04/11/02 LEB (CFITSIO) */ #define f2cFortran #endif #if defined(__GNUC__) && defined(linux) /* 06/21/00 PDW (CFITSIO) */ #define f2cFortran #endif #if defined(macintosh) /* 11/1999 (CFITSIO) */ #define f2cFortran #endif #if defined(__APPLE__) /* 11/2002 (CFITSIO) */ #define f2cFortran #endif #if defined(__hpux) /* 921107: Use __hpux instead of __hp9000s300 */ #define hpuxFortran /* Should also allow hp9000s7/800 use.*/ #endif #if defined(apollo) #define apolloFortran /* __CF__APOLLO67 also defines some behavior. */ #endif #if defined(sun) || defined(__sun) #define sunFortran #endif #if defined(_IBMR2) #define IBMR2Fortran #endif #if defined(_CRAY) #define CRAYFortran /* _CRAYT3E also defines some behavior. */ #endif #if defined(_SX) #define SXFortran #endif #if defined(mips) || defined(__mips) #define mipsFortran #endif #if defined(vms) || defined(__vms) #define vmsFortran #endif #if defined(__alpha) && defined(__unix__) #define DECFortran #endif #if defined(__convex__) #define CONVEXFortran #endif #if defined(VISUAL_CPLUSPLUS) #define PowerStationFortran #endif #endif /* ...Fortran */ #endif /* ...Fortran */ /* Split #if into 2 because some HP-UX can't handle long #if */ #if !(defined(NAGf90Fortran)||defined(f2cFortran)||defined(hpuxFortran)||defined(apolloFortran)||defined(sunFortran)||defined(IBMR2Fortran)||defined(CRAYFortran)) #if !(defined(mipsFortran)||defined(DECFortran)||defined(vmsFortran)||defined(CONVEXFortran)||defined(PowerStationFortran)||defined(AbsoftUNIXFortran)||defined(AbsoftProFortran)||defined(SXFortran)) /* If your compiler barfs on ' #error', replace # with the trigraph for # */ #error "cfortran.h: Can't find your environment among:\ - GNU gcc (g77) on Linux. \ - MIPS cc and f77 2.0. (e.g. Silicon Graphics, DECstations, ...) \ - IBM AIX XL C and FORTRAN Compiler/6000 Version 01.01.0000.0000 \ - VAX VMS CC 3.1 and FORTRAN 5.4. \ - Alpha VMS DEC C 1.3 and DEC FORTRAN 6.0. \ - Alpha OSF DEC C and DEC Fortran for OSF/1 AXP Version 1.2 \ - Apollo DomainOS 10.2 (sys5.3) with f77 10.7 and cc 6.7. \ - CRAY \ - NEC SX-4 SUPER-UX \ - CONVEX \ - Sun \ - PowerStation Fortran with Visual C++ \ - HP9000s300/s700/s800 Latest test with: HP-UX A.08.07 A 9000/730 \ - LynxOS: cc or gcc with f2c. \ - VAXUltrix: vcc,cc or gcc with f2c. gcc or cc with f77. \ - f77 with vcc works; but missing link magic for f77 I/O. \ - NO fort. None of gcc, cc or vcc generate required names.\ - f2c/g77: Use #define f2cFortran, or cc -Df2cFortran \ - gfortran: Use #define gFortran, or cc -DgFortran \ (also necessary for g77 with -fno-f2c option) \ - NAG f90: Use #define NAGf90Fortran, or cc -DNAGf90Fortran \ - Absoft UNIX F77: Use #define AbsoftUNIXFortran or cc -DAbsoftUNIXFortran \ - Absoft Pro Fortran: Use #define AbsoftProFortran \ - Portland Group Fortran: Use #define pgiFortran \ - Intel Fortran: Use #define INTEL_COMPILER" /* Compiler must throw us out at this point! */ #endif #endif #if defined(VAXC) && !defined(__VAXC) #define OLD_VAXC #pragma nostandard /* Prevent %CC-I-PARAMNOTUSED. */ #endif /* Throughout cfortran.h we use: UN = Uppercase Name. LN = Lowercase Name. */ /* "extname" changed to "appendus" below (CFITSIO) */ #if defined(f2cFortran) || defined(NAGf90Fortran) || defined(DECFortran) || defined(mipsFortran) || defined(apolloFortran) || defined(sunFortran) || defined(CONVEXFortran) || defined(SXFortran) || defined(appendus) #define CFC_(UN,LN) _(LN,_) /* Lowercase FORTRAN symbols. */ #define orig_fcallsc(UN,LN) CFC_(UN,LN) #else #if defined(CRAYFortran) || defined(PowerStationFortran) || defined(AbsoftProFortran) #ifdef _CRAY /* (UN), not UN, circumvents CRAY preprocessor bug. */ #define CFC_(UN,LN) (UN) /* Uppercase FORTRAN symbols. */ #else /* At least VISUAL_CPLUSPLUS barfs on (UN), so need UN. */ #define CFC_(UN,LN) UN /* Uppercase FORTRAN symbols. */ #endif #define orig_fcallsc(UN,LN) CFC_(UN,LN) /* CRAY insists on arg.'s here. */ #else /* For following machines one may wish to change the fcallsc default. */ #define CF_SAME_NAMESPACE #ifdef vmsFortran #define CFC_(UN,LN) LN /* Either case FORTRAN symbols. */ /* BUT we usually use UN for C macro to FORTRAN routines, so use LN here,*/ /* because VAX/VMS doesn't do recursive macros. */ #define orig_fcallsc(UN,LN) UN #else /* HP-UX without +ppu or IBMR2 without -qextname. NOT reccomended. */ #define CFC_(UN,LN) LN /* Lowercase FORTRAN symbols. */ #define orig_fcallsc(UN,LN) CFC_(UN,LN) #endif /* vmsFortran */ #endif /* CRAYFortran PowerStationFortran */ #endif /* ....Fortran */ #define fcallsc(UN,LN) orig_fcallsc(UN,LN) #define preface_fcallsc(P,p,UN,LN) CFC_(_(P,UN),_(p,LN)) #define append_fcallsc(P,p,UN,LN) CFC_(_(UN,P),_(LN,p)) #define C_FUNCTION(UN,LN) fcallsc(UN,LN) #define FORTRAN_FUNCTION(UN,LN) CFC_(UN,LN) #ifndef COMMON_BLOCK #ifndef CONVEXFortran #ifndef CLIPPERFortran #if !(defined(AbsoftUNIXFortran)||defined(AbsoftProFortran)) #define COMMON_BLOCK(UN,LN) CFC_(UN,LN) #else #define COMMON_BLOCK(UN,LN) _(_C,LN) #endif /* AbsoftUNIXFortran or AbsoftProFortran */ #else #define COMMON_BLOCK(UN,LN) _(LN,__) #endif /* CLIPPERFortran */ #else #define COMMON_BLOCK(UN,LN) _3(_,LN,_) #endif /* CONVEXFortran */ #endif /* COMMON_BLOCK */ #ifndef DOUBLE_PRECISION #if defined(CRAYFortran) && !defined(_CRAYT3E) #define DOUBLE_PRECISION long double #else #define DOUBLE_PRECISION double #endif #endif #ifndef FORTRAN_REAL #if defined(CRAYFortran) && defined(_CRAYT3E) #define FORTRAN_REAL double #else #define FORTRAN_REAL float #endif #endif #ifdef CRAYFortran #ifdef _CRAY #include #else #include "fortran.h" /* i.e. if crosscompiling assume user has file. */ #endif #define FLOATVVVVVVV_cfPP (FORTRAN_REAL *) /* Used for C calls FORTRAN. */ /* CRAY's double==float but CRAY says pointers to doubles and floats are diff.*/ #define VOIDP (void *) /* When FORTRAN calls C, we don't know if C routine arg.'s have been declared float *, or double *. */ #else #define FLOATVVVVVVV_cfPP #define VOIDP #endif #ifdef vmsFortran #if defined(vms) || defined(__vms) #include #else #include "descrip.h" /* i.e. if crosscompiling assume user has file. */ #endif #endif #ifdef sunFortran #if defined(sun) || defined(__sun) #include /* Sun's FLOATFUNCTIONTYPE, ASSIGNFLOAT, RETURNFLOAT. */ #else #include "math.h" /* i.e. if crosscompiling assume user has file. */ #endif /* At least starting with the default C compiler SC3.0.1 of SunOS 5.3, * FLOATFUNCTIONTYPE, ASSIGNFLOAT, RETURNFLOAT are not required and not in * , since sun C no longer promotes C float return values to doubles. * Therefore, only use them if defined. * Even if gcc is being used, assume that it exhibits the Sun C compiler * behavior in order to be able to use *.o from the Sun C compiler. * i.e. If FLOATFUNCTIONTYPE, etc. are in math.h, they required by gcc. */ #endif #ifndef apolloFortran #define COMMON_BLOCK_DEF(DEFINITION, NAME) extern DEFINITION NAME #define CF_NULL_PROTO #else /* HP doesn't understand #elif. */ /* Without ANSI prototyping, Apollo promotes float functions to double. */ /* Note that VAX/VMS, IBM, Mips choke on 'type function(...);' prototypes. */ #define CF_NULL_PROTO ... #ifndef __CF__APOLLO67 #define COMMON_BLOCK_DEF(DEFINITION, NAME) \ DEFINITION NAME __attribute((__section(NAME))) #else #define COMMON_BLOCK_DEF(DEFINITION, NAME) \ DEFINITION NAME #attribute[section(NAME)] #endif #endif #ifdef __cplusplus #undef CF_NULL_PROTO #define CF_NULL_PROTO ... #endif #ifndef USE_NEW_DELETE #ifdef __cplusplus #define USE_NEW_DELETE 1 #else #define USE_NEW_DELETE 0 #endif #endif #if USE_NEW_DELETE #define _cf_malloc(N) new char[N] #define _cf_free(P) delete[] P #else #define _cf_malloc(N) (char *)malloc(N) #define _cf_free(P) free(P) #endif #ifdef mipsFortran #define CF_DECLARE_GETARG int f77argc; char **f77argv #define CF_SET_GETARG(ARGC,ARGV) f77argc = ARGC; f77argv = ARGV #else #define CF_DECLARE_GETARG #define CF_SET_GETARG(ARGC,ARGV) #endif #ifdef OLD_VAXC /* Allow %CC-I-PARAMNOTUSED. */ #pragma standard #endif #define AcfCOMMA , #define AcfCOLON ; /*-------------------------------------------------------------------------*/ /* UTILITIES USED WITHIN CFORTRAN.H */ #define _cfMIN(A,B) (As) { /* Need this to handle NULL string.*/ while (e>s && *--e==t) {;} /* Don't follow t's past beginning. */ e[*e==t?0:1] = '\0'; /* Handle s[0]=t correctly. */ } return s; } /* kill_trailingn(s,t,e) will kill the trailing t's in string s. e normally points to the terminating '\0' of s, but may actually point to anywhere in s. s's new '\0' will be placed at e or earlier in order to remove any trailing t's. If es) { /* Watch out for neg. length string.*/ while (e>s && *--e==t){;} /* Don't follow t's past beginning. */ e[*e==t?0:1] = '\0'; /* Handle s[0]=t correctly. */ } return s; } /* Note the following assumes that any element which has t's to be chopped off, does indeed fill the entire element. */ #ifndef __CF__KnR static char *vkill_trailing(char* cstr, int elem_len, int sizeofcstr, char t) #else static char *vkill_trailing( cstr, elem_len, sizeofcstr, t) char* cstr; int elem_len; int sizeofcstr; char t; #endif { int i; for (i=0; i= 4.3 gives message: zow35> cc -c -DDECFortran cfortest.c cfe: Fatal: Out of memory: cfortest.c zow35> Old __hpux had the problem, but new 'HP-UX A.09.03 A 9000/735' is fine if using -Aa, otherwise we have a problem. */ #ifndef MAX_PREPRO_ARGS #if !defined(__GNUC__) && (defined(VAXUltrix) || defined(__CF__APOLLO67) || (defined(sun)&&!defined(__sun)) || defined(_CRAY) || defined(__ultrix__) || (defined(__hpux)&&defined(__CF__KnR))) #define MAX_PREPRO_ARGS 31 #else #define MAX_PREPRO_ARGS 99 #endif #endif #if defined(AbsoftUNIXFortran) || defined(AbsoftProFortran) /* In addition to explicit Absoft stuff, only Absoft requires: - DEFAULT coming from _cfSTR. DEFAULT could have been called e.g. INT, but keep it for clarity. - M term in CFARGT14 and CFARGT14FS. */ #define ABSOFT_cf1(T0) _(T0,_cfSTR)(0,ABSOFT1,0,0,0,0,0) #define ABSOFT_cf2(T0) _(T0,_cfSTR)(0,ABSOFT2,0,0,0,0,0) #define ABSOFT_cf3(T0) _(T0,_cfSTR)(0,ABSOFT3,0,0,0,0,0) #define DEFAULT_cfABSOFT1 #define LOGICAL_cfABSOFT1 #define STRING_cfABSOFT1 ,MAX_LEN_FORTRAN_FUNCTION_STRING #define DEFAULT_cfABSOFT2 #define LOGICAL_cfABSOFT2 #define STRING_cfABSOFT2 ,unsigned D0 #define DEFAULT_cfABSOFT3 #define LOGICAL_cfABSOFT3 #define STRING_cfABSOFT3 ,D0 #else #define ABSOFT_cf1(T0) #define ABSOFT_cf2(T0) #define ABSOFT_cf3(T0) #endif /* _Z introduced to cicumvent IBM and HP silly preprocessor warning. e.g. "Macro CFARGT14 invoked with a null argument." */ #define _Z #define CFARGT14S(S,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) \ S(T1,1) S(T2,2) S(T3,3) S(T4,4) S(T5,5) S(T6,6) S(T7,7) \ S(T8,8) S(T9,9) S(TA,10) S(TB,11) S(TC,12) S(TD,13) S(TE,14) #define CFARGT27S(S,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR) \ S(T1,1) S(T2,2) S(T3,3) S(T4,4) S(T5,5) S(T6,6) S(T7,7) \ S(T8,8) S(T9,9) S(TA,10) S(TB,11) S(TC,12) S(TD,13) S(TE,14) \ S(TF,15) S(TG,16) S(TH,17) S(TI,18) S(TJ,19) S(TK,20) S(TL,21) \ S(TM,22) S(TN,23) S(TO,24) S(TP,25) S(TQ,26) S(TR,27) #define CFARGT14FS(F,S,M,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) \ F(T1,1,0) F(T2,2,1) F(T3,3,1) F(T4,4,1) F(T5,5,1) F(T6,6,1) F(T7,7,1) \ F(T8,8,1) F(T9,9,1) F(TA,10,1) F(TB,11,1) F(TC,12,1) F(TD,13,1) F(TE,14,1) \ M CFARGT14S(S,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) #define CFARGT27FS(F,S,M,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR) \ F(T1,1,0) F(T2,2,1) F(T3,3,1) F(T4,4,1) F(T5,5,1) F(T6,6,1) F(T7,7,1) \ F(T8,8,1) F(T9,9,1) F(TA,10,1) F(TB,11,1) F(TC,12,1) F(TD,13,1) F(TE,14,1) \ F(TF,15,1) F(TG,16,1) F(TH,17,1) F(TI,18,1) F(TJ,19,1) F(TK,20,1) F(TL,21,1) \ F(TM,22,1) F(TN,23,1) F(TO,24,1) F(TP,25,1) F(TQ,26,1) F(TR,27,1) \ M CFARGT27S(S,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR) #if !(defined(PowerStationFortran)||defined(hpuxFortran800)) /* Old CFARGT14 -> CFARGT14FS as seen below, for Absoft cross-compile yields: SunOS> cc -c -Xa -DAbsoftUNIXFortran c.c "c.c", line 406: warning: argument mismatch Haven't checked if this is ANSI C or a SunOS bug. SunOS -Xs works ok. Behavior is most clearly seen in example: #define A 1 , 2 #define C(X,Y,Z) x=X. y=Y. z=Z. #define D(X,Y,Z) C(X,Y,Z) D(x,A,z) Output from preprocessor is: x = x . y = 1 . z = 2 . #define CFARGT14(F,S,M,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) \ CFARGT14FS(F,S,M,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) */ #define CFARGT14(F,S,M,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) \ F(T1,1,0) F(T2,2,1) F(T3,3,1) F(T4,4,1) F(T5,5,1) F(T6,6,1) F(T7,7,1) \ F(T8,8,1) F(T9,9,1) F(TA,10,1) F(TB,11,1) F(TC,12,1) F(TD,13,1) F(TE,14,1) \ M CFARGT14S(S,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) #define CFARGT27(F,S,M,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR) \ F(T1,1,0) F(T2,2,1) F(T3,3,1) F(T4,4,1) F(T5,5,1) F(T6,6,1) F(T7,7,1) \ F(T8,8,1) F(T9,9,1) F(TA,10,1) F(TB,11,1) F(TC,12,1) F(TD,13,1) F(TE,14,1) \ F(TF,15,1) F(TG,16,1) F(TH,17,1) F(TI,18,1) F(TJ,19,1) F(TK,20,1) F(TL,21,1) \ F(TM,22,1) F(TN,23,1) F(TO,24,1) F(TP,25,1) F(TQ,26,1) F(TR,27,1) \ M CFARGT27S(S,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR) #define CFARGT20(F,S,M,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK) \ F(T1,1,0) F(T2,2,1) F(T3,3,1) F(T4,4,1) F(T5,5,1) F(T6,6,1) F(T7,7,1) \ F(T8,8,1) F(T9,9,1) F(TA,10,1) F(TB,11,1) F(TC,12,1) F(TD,13,1) F(TE,14,1) \ F(TF,15,1) F(TG,16,1) F(TH,17,1) F(TI,18,1) F(TJ,19,1) F(TK,20,1) \ S(T1,1) S(T2,2) S(T3,3) S(T4,4) S(T5,5) S(T6,6) S(T7,7) \ S(T8,8) S(T9,9) S(TA,10) S(TB,11) S(TC,12) S(TD,13) S(TE,14) \ S(TF,15) S(TG,16) S(TH,17) S(TI,18) S(TJ,19) S(TK,20) #define CFARGTA14(F,S,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE) \ F(T1,A1,1,0) F(T2,A2,2,1) F(T3,A3,3,1) F(T4,A4,4,1) F(T5,A5,5,1) F(T6,A6,6,1) \ F(T7,A7,7,1) F(T8,A8,8,1) F(T9,A9,9,1) F(TA,AA,10,1) F(TB,AB,11,1) F(TC,AC,12,1) \ F(TD,AD,13,1) F(TE,AE,14,1) S(T1,1) S(T2,2) S(T3,3) S(T4,4) \ S(T5,5) S(T6,6) S(T7,7) S(T8,8) S(T9,9) S(TA,10) \ S(TB,11) S(TC,12) S(TD,13) S(TE,14) #if MAX_PREPRO_ARGS>31 #define CFARGTA20(F,S,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK) \ F(T1,A1,1,0) F(T2,A2,2,1) F(T3,A3,3,1) F(T4,A4,4,1) F(T5,A5,5,1) F(T6,A6,6,1) \ F(T7,A7,7,1) F(T8,A8,8,1) F(T9,A9,9,1) F(TA,AA,10,1) F(TB,AB,11,1) F(TC,AC,12,1) \ F(TD,AD,13,1) F(TE,AE,14,1) F(TF,AF,15,1) F(TG,AG,16,1) F(TH,AH,17,1) F(TI,AI,18,1) \ F(TJ,AJ,19,1) F(TK,AK,20,1) S(T1,1) S(T2,2) S(T3,3) S(T4,4) \ S(T5,5) S(T6,6) S(T7,7) S(T8,8) S(T9,9) S(TA,10) \ S(TB,11) S(TC,12) S(TD,13) S(TE,14) S(TF,15) S(TG,16) \ S(TH,17) S(TI,18) S(TJ,19) S(TK,20) #define CFARGTA27(F,S,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK,AL,AM,AN,AO,AP,AQ,AR) \ F(T1,A1,1,0) F(T2,A2,2,1) F(T3,A3,3,1) F(T4,A4,4,1) F(T5,A5,5,1) F(T6,A6,6,1) \ F(T7,A7,7,1) F(T8,A8,8,1) F(T9,A9,9,1) F(TA,AA,10,1) F(TB,AB,11,1) F(TC,AC,12,1) \ F(TD,AD,13,1) F(TE,AE,14,1) F(TF,AF,15,1) F(TG,AG,16,1) F(TH,AH,17,1) F(TI,AI,18,1) \ F(TJ,AJ,19,1) F(TK,AK,20,1) F(TL,AL,21,1) F(TM,AM,22,1) F(TN,AN,23,1) F(TO,AO,24,1) \ F(TP,AP,25,1) F(TQ,AQ,26,1) F(TR,AR,27,1) S(T1,1) S(T2,2) S(T3,3) \ S(T4,4) S(T5,5) S(T6,6) S(T7,7) S(T8,8) S(T9,9) \ S(TA,10) S(TB,11) S(TC,12) S(TD,13) S(TE,14) S(TF,15) \ S(TG,16) S(TH,17) S(TI,18) S(TJ,19) S(TK,20) S(TL,21) \ S(TM,22) S(TN,23) S(TO,24) S(TP,25) S(TQ,26) S(TR,27) #endif #else #define CFARGT14(F,S,M,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) \ F(T1,1,0) S(T1,1) F(T2,2,1) S(T2,2) F(T3,3,1) S(T3,3) F(T4,4,1) S(T4,4) \ F(T5,5,1) S(T5,5) F(T6,6,1) S(T6,6) F(T7,7,1) S(T7,7) F(T8,8,1) S(T8,8) \ F(T9,9,1) S(T9,9) F(TA,10,1) S(TA,10) F(TB,11,1) S(TB,11) F(TC,12,1) S(TC,12) \ F(TD,13,1) S(TD,13) F(TE,14,1) S(TE,14) #define CFARGT27(F,S,M,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR) \ F(T1,1,0) S(T1,1) F(T2,2,1) S(T2,2) F(T3,3,1) S(T3,3) F(T4,4,1) S(T4,4) \ F(T5,5,1) S(T5,5) F(T6,6,1) S(T6,6) F(T7,7,1) S(T7,7) F(T8,8,1) S(T8,8) \ F(T9,9,1) S(T9,9) F(TA,10,1) S(TA,10) F(TB,11,1) S(TB,11) F(TC,12,1) S(TC,12) \ F(TD,13,1) S(TD,13) F(TE,14,1) S(TE,14) F(TF,15,1) S(TF,15) F(TG,16,1) S(TG,16) \ F(TH,17,1) S(TH,17) F(TI,18,1) S(TI,18) F(TJ,19,1) S(TJ,19) F(TK,20,1) S(TK,20) \ F(TL,21,1) S(TL,21) F(TM,22,1) S(TM,22) F(TN,23,1) S(TN,23) F(TO,24,1) S(TO,24) \ F(TP,25,1) S(TP,25) F(TQ,26,1) S(TQ,26) F(TR,27,1) S(TR,27) #define CFARGT20(F,S,M,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK) \ F(T1,1,0) S(T1,1) F(T2,2,1) S(T2,2) F(T3,3,1) S(T3,3) F(T4,4,1) S(T4,4) \ F(T5,5,1) S(T5,5) F(T6,6,1) S(T6,6) F(T7,7,1) S(T7,7) F(T8,8,1) S(T8,8) \ F(T9,9,1) S(T9,9) F(TA,10,1) S(TA,10) F(TB,11,1) S(TB,11) F(TC,12,1) S(TC,12) \ F(TD,13,1) S(TD,13) F(TE,14,1) S(TE,14) F(TF,15,1) S(TF,15) F(TG,16,1) S(TG,16) \ F(TH,17,1) S(TH,17) F(TI,18,1) S(TI,18) F(TJ,19,1) S(TJ,19) F(TK,20,1) S(TK,20) #define CFARGTA14(F,S,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE) \ F(T1,A1,1,0) S(T1,1) F(T2,A2,2,1) S(T2,2) F(T3,A3,3,1) S(T3,3) \ F(T4,A4,4,1) S(T4,4) F(T5,A5,5,1) S(T5,5) F(T6,A6,6,1) S(T6,6) \ F(T7,A7,7,1) S(T7,7) F(T8,A8,8,1) S(T8,8) F(T9,A9,9,1) S(T9,9) \ F(TA,AA,10,1) S(TA,10) F(TB,AB,11,1) S(TB,11) F(TC,AC,12,1) S(TC,12) \ F(TD,AD,13,1) S(TD,13) F(TE,AE,14,1) S(TE,14) #if MAX_PREPRO_ARGS>31 #define CFARGTA20(F,S,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK) \ F(T1,A1,1,0) S(T1,1) F(T2,A2,2,1) S(T2,2) F(T3,A3,3,1) S(T3,3) \ F(T4,A4,4,1) S(T4,4) F(T5,A5,5,1) S(T5,5) F(T6,A6,6,1) S(T6,6) \ F(T7,A7,7,1) S(T7,7) F(T8,A8,8,1) S(T8,8) F(T9,A9,9,1) S(T9,9) \ F(TA,AA,10,1) S(TA,10) F(TB,AB,11,1) S(TB,11) F(TC,AC,12,1) S(TC,12) \ F(TD,AD,13,1) S(TD,13) F(TE,AE,14,1) S(TE,14) F(TF,AF,15,1) S(TF,15) \ F(TG,AG,16,1) S(TG,16) F(TH,AH,17,1) S(TH,17) F(TI,AI,18,1) S(TI,18) \ F(TJ,AJ,19,1) S(TJ,19) F(TK,AK,20,1) S(TK,20) #define CFARGTA27(F,S,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK,AL,AM,AN,AO,AP,AQ,AR) \ F(T1,A1,1,0) S(T1,1) F(T2,A2,2,1) S(T2,2) F(T3,A3,3,1) S(T3,3) \ F(T4,A4,4,1) S(T4,4) F(T5,A5,5,1) S(T5,5) F(T6,A6,6,1) S(T6,6) \ F(T7,A7,7,1) S(T7,7) F(T8,A8,8,1) S(T8,8) F(T9,A9,9,1) S(T9,9) \ F(TA,AA,10,1) S(TA,10) F(TB,AB,11,1) S(TB,11) F(TC,AC,12,1) S(TC,12) \ F(TD,AD,13,1) S(TD,13) F(TE,AE,14,1) S(TE,14) F(TF,AF,15,1) S(TF,15) \ F(TG,AG,16,1) S(TG,16) F(TH,AH,17,1) S(TH,17) F(TI,AI,18,1) S(TI,18) \ F(TJ,AJ,19,1) S(TJ,19) F(TK,AK,20,1) S(TK,20) F(TL,AL,21,1) S(TL,21) \ F(TM,AM,22,1) S(TM,22) F(TN,AN,23,1) S(TN,23) F(TO,AO,24,1) S(TO,24) \ F(TP,AP,25,1) S(TP,25) F(TQ,AQ,26,1) S(TQ,26) F(TR,AR,27,1) S(TR,27) #endif #endif #define PROTOCCALLSFSUB1( UN,LN,T1) \ PROTOCCALLSFSUB14(UN,LN,T1,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0) #define PROTOCCALLSFSUB2( UN,LN,T1,T2) \ PROTOCCALLSFSUB14(UN,LN,T1,T2,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0) #define PROTOCCALLSFSUB3( UN,LN,T1,T2,T3) \ PROTOCCALLSFSUB14(UN,LN,T1,T2,T3,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0) #define PROTOCCALLSFSUB4( UN,LN,T1,T2,T3,T4) \ PROTOCCALLSFSUB14(UN,LN,T1,T2,T3,T4,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0) #define PROTOCCALLSFSUB5( UN,LN,T1,T2,T3,T4,T5) \ PROTOCCALLSFSUB14(UN,LN,T1,T2,T3,T4,T5,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0) #define PROTOCCALLSFSUB6( UN,LN,T1,T2,T3,T4,T5,T6) \ PROTOCCALLSFSUB14(UN,LN,T1,T2,T3,T4,T5,T6,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0) #define PROTOCCALLSFSUB7( UN,LN,T1,T2,T3,T4,T5,T6,T7) \ PROTOCCALLSFSUB14(UN,LN,T1,T2,T3,T4,T5,T6,T7,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0) #define PROTOCCALLSFSUB8( UN,LN,T1,T2,T3,T4,T5,T6,T7,T8) \ PROTOCCALLSFSUB14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0) #define PROTOCCALLSFSUB9( UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9) \ PROTOCCALLSFSUB14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,CF_0,CF_0,CF_0,CF_0,CF_0) #define PROTOCCALLSFSUB10(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA) \ PROTOCCALLSFSUB14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,CF_0,CF_0,CF_0,CF_0) #define PROTOCCALLSFSUB11(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB) \ PROTOCCALLSFSUB14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,CF_0,CF_0,CF_0) #define PROTOCCALLSFSUB12(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC) \ PROTOCCALLSFSUB14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,CF_0,CF_0) #define PROTOCCALLSFSUB13(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD) \ PROTOCCALLSFSUB14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,CF_0) #define PROTOCCALLSFSUB15(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF) \ PROTOCCALLSFSUB20(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,CF_0,CF_0,CF_0,CF_0,CF_0) #define PROTOCCALLSFSUB16(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG) \ PROTOCCALLSFSUB20(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,CF_0,CF_0,CF_0,CF_0) #define PROTOCCALLSFSUB17(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH) \ PROTOCCALLSFSUB20(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,CF_0,CF_0,CF_0) #define PROTOCCALLSFSUB18(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI) \ PROTOCCALLSFSUB20(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,CF_0,CF_0) #define PROTOCCALLSFSUB19(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ) \ PROTOCCALLSFSUB20(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,CF_0) #define PROTOCCALLSFSUB21(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL) \ PROTOCCALLSFSUB27(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0) #define PROTOCCALLSFSUB22(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM) \ PROTOCCALLSFSUB27(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,CF_0,CF_0,CF_0,CF_0,CF_0) #define PROTOCCALLSFSUB23(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN) \ PROTOCCALLSFSUB27(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,CF_0,CF_0,CF_0,CF_0) #define PROTOCCALLSFSUB24(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO) \ PROTOCCALLSFSUB27(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,CF_0,CF_0,CF_0) #define PROTOCCALLSFSUB25(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP) \ PROTOCCALLSFSUB27(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,CF_0,CF_0) #define PROTOCCALLSFSUB26(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ) \ PROTOCCALLSFSUB27(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,CF_0) #ifndef FCALLSC_QUALIFIER #ifdef VISUAL_CPLUSPLUS #define FCALLSC_QUALIFIER __stdcall #else #define FCALLSC_QUALIFIER #endif #endif #ifdef __cplusplus #define CFextern extern "C" #else #define CFextern extern #endif #ifdef CFSUBASFUN #define PROTOCCALLSFSUB0(UN,LN) \ PROTOCCALLSFFUN0( VOID,UN,LN) #define PROTOCCALLSFSUB14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) \ PROTOCCALLSFFUN14(VOID,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) #define PROTOCCALLSFSUB20(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK)\ PROTOCCALLSFFUN20(VOID,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK) #define PROTOCCALLSFSUB27(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR)\ PROTOCCALLSFFUN27(VOID,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR) #else /* Note: Prevent compiler warnings, null #define PROTOCCALLSFSUB14/20 after #include-ing cfortran.h if calling the FORTRAN wrapper within the same source code where the wrapper is created. */ #define PROTOCCALLSFSUB0(UN,LN) _(VOID,_cfPU)(CFC_(UN,LN))(); #ifndef __CF__KnR #define PROTOCCALLSFSUB14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) \ _(VOID,_cfPU)(CFC_(UN,LN))( CFARGT14(NCF,KCF,_Z,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) ); #define PROTOCCALLSFSUB20(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK)\ _(VOID,_cfPU)(CFC_(UN,LN))( CFARGT20(NCF,KCF,_Z,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK) ); #define PROTOCCALLSFSUB27(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR)\ _(VOID,_cfPU)(CFC_(UN,LN))( CFARGT27(NCF,KCF,_Z,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR) ); #else #define PROTOCCALLSFSUB14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) \ PROTOCCALLSFSUB0(UN,LN) #define PROTOCCALLSFSUB20(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK) \ PROTOCCALLSFSUB0(UN,LN) #define PROTOCCALLSFSUB27(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR) \ PROTOCCALLSFSUB0(UN,LN) #endif #endif #ifdef OLD_VAXC /* Allow %CC-I-PARAMNOTUSED. */ #pragma standard #endif #define CCALLSFSUB1( UN,LN,T1, A1) \ CCALLSFSUB5 (UN,LN,T1,CF_0,CF_0,CF_0,CF_0,A1,0,0,0,0) #define CCALLSFSUB2( UN,LN,T1,T2, A1,A2) \ CCALLSFSUB5 (UN,LN,T1,T2,CF_0,CF_0,CF_0,A1,A2,0,0,0) #define CCALLSFSUB3( UN,LN,T1,T2,T3, A1,A2,A3) \ CCALLSFSUB5 (UN,LN,T1,T2,T3,CF_0,CF_0,A1,A2,A3,0,0) #define CCALLSFSUB4( UN,LN,T1,T2,T3,T4, A1,A2,A3,A4)\ CCALLSFSUB5 (UN,LN,T1,T2,T3,T4,CF_0,A1,A2,A3,A4,0) #define CCALLSFSUB5( UN,LN,T1,T2,T3,T4,T5, A1,A2,A3,A4,A5) \ CCALLSFSUB10(UN,LN,T1,T2,T3,T4,T5,CF_0,CF_0,CF_0,CF_0,CF_0,A1,A2,A3,A4,A5,0,0,0,0,0) #define CCALLSFSUB6( UN,LN,T1,T2,T3,T4,T5,T6, A1,A2,A3,A4,A5,A6) \ CCALLSFSUB10(UN,LN,T1,T2,T3,T4,T5,T6,CF_0,CF_0,CF_0,CF_0,A1,A2,A3,A4,A5,A6,0,0,0,0) #define CCALLSFSUB7( UN,LN,T1,T2,T3,T4,T5,T6,T7, A1,A2,A3,A4,A5,A6,A7) \ CCALLSFSUB10(UN,LN,T1,T2,T3,T4,T5,T6,T7,CF_0,CF_0,CF_0,A1,A2,A3,A4,A5,A6,A7,0,0,0) #define CCALLSFSUB8( UN,LN,T1,T2,T3,T4,T5,T6,T7,T8, A1,A2,A3,A4,A5,A6,A7,A8) \ CCALLSFSUB10(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,CF_0,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,0,0) #define CCALLSFSUB9( UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,A1,A2,A3,A4,A5,A6,A7,A8,A9)\ CCALLSFSUB10(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,A9,0) #define CCALLSFSUB10(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA)\ CCALLSFSUB14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,CF_0,CF_0,CF_0,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,0,0,0,0) #define CCALLSFSUB11(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB)\ CCALLSFSUB14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,CF_0,CF_0,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,0,0,0) #define CCALLSFSUB12(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC)\ CCALLSFSUB14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,CF_0,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,0,0) #define CCALLSFSUB13(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD)\ CCALLSFSUB14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,0) #ifdef __cplusplus #define CPPPROTOCLSFSUB0( UN,LN) #define CPPPROTOCLSFSUB14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) #define CPPPROTOCLSFSUB20(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK) #define CPPPROTOCLSFSUB27(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR) #else #define CPPPROTOCLSFSUB0(UN,LN) \ PROTOCCALLSFSUB0(UN,LN) #define CPPPROTOCLSFSUB14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) \ PROTOCCALLSFSUB14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) #define CPPPROTOCLSFSUB20(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK) \ PROTOCCALLSFSUB20(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK) #define CPPPROTOCLSFSUB27(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR) \ PROTOCCALLSFSUB27(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR) #endif #ifdef CFSUBASFUN #define CCALLSFSUB0(UN,LN) CCALLSFFUN0(UN,LN) #define CCALLSFSUB14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE)\ CCALLSFFUN14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE) #else /* do{...}while(0) allows if(a==b) FORT(); else BORT(); */ #define CCALLSFSUB0( UN,LN) do{CPPPROTOCLSFSUB0(UN,LN) CFC_(UN,LN)();}while(0) #define CCALLSFSUB14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE)\ do{VVCF(T1,A1,B1) VVCF(T2,A2,B2) VVCF(T3,A3,B3) VVCF(T4,A4,B4) VVCF(T5,A5,B5) \ VVCF(T6,A6,B6) VVCF(T7,A7,B7) VVCF(T8,A8,B8) VVCF(T9,A9,B9) VVCF(TA,AA,B10) \ VVCF(TB,AB,B11) VVCF(TC,AC,B12) VVCF(TD,AD,B13) VVCF(TE,AE,B14) \ CPPPROTOCLSFSUB14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) \ ACF(LN,T1,A1,1) ACF(LN,T2,A2,2) ACF(LN,T3,A3,3) \ ACF(LN,T4,A4,4) ACF(LN,T5,A5,5) ACF(LN,T6,A6,6) ACF(LN,T7,A7,7) \ ACF(LN,T8,A8,8) ACF(LN,T9,A9,9) ACF(LN,TA,AA,10) ACF(LN,TB,AB,11) \ ACF(LN,TC,AC,12) ACF(LN,TD,AD,13) ACF(LN,TE,AE,14) \ CFC_(UN,LN)( CFARGTA14(AACF,JCF,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE) );\ WCF(T1,A1,1) WCF(T2,A2,2) WCF(T3,A3,3) WCF(T4,A4,4) WCF(T5,A5,5) \ WCF(T6,A6,6) WCF(T7,A7,7) WCF(T8,A8,8) WCF(T9,A9,9) WCF(TA,AA,10) \ WCF(TB,AB,11) WCF(TC,AC,12) WCF(TD,AD,13) WCF(TE,AE,14) }while(0) #endif #if MAX_PREPRO_ARGS>31 #define CCALLSFSUB15(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF)\ CCALLSFSUB20(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,CF_0,CF_0,CF_0,CF_0,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,0,0,0,0,0) #define CCALLSFSUB16(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG)\ CCALLSFSUB20(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,CF_0,CF_0,CF_0,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,0,0,0,0) #define CCALLSFSUB17(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH)\ CCALLSFSUB20(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,CF_0,CF_0,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,0,0,0) #define CCALLSFSUB18(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI)\ CCALLSFSUB20(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,CF_0,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,0,0) #define CCALLSFSUB19(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ)\ CCALLSFSUB20(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,0) #ifdef CFSUBASFUN #define CCALLSFSUB20(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH, \ TI,TJ,TK, A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK) \ CCALLSFFUN20(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH, \ TI,TJ,TK, A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK) #else #define CCALLSFSUB20(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH, \ TI,TJ,TK, A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK) \ do{VVCF(T1,A1,B1) VVCF(T2,A2,B2) VVCF(T3,A3,B3) VVCF(T4,A4,B4) VVCF(T5,A5,B5) \ VVCF(T6,A6,B6) VVCF(T7,A7,B7) VVCF(T8,A8,B8) VVCF(T9,A9,B9) VVCF(TA,AA,B10) \ VVCF(TB,AB,B11) VVCF(TC,AC,B12) VVCF(TD,AD,B13) VVCF(TE,AE,B14) VVCF(TF,AF,B15) \ VVCF(TG,AG,B16) VVCF(TH,AH,B17) VVCF(TI,AI,B18) VVCF(TJ,AJ,B19) VVCF(TK,AK,B20) \ CPPPROTOCLSFSUB20(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK) \ ACF(LN,T1,A1,1) ACF(LN,T2,A2,2) ACF(LN,T3,A3,3) ACF(LN,T4,A4,4) \ ACF(LN,T5,A5,5) ACF(LN,T6,A6,6) ACF(LN,T7,A7,7) ACF(LN,T8,A8,8) \ ACF(LN,T9,A9,9) ACF(LN,TA,AA,10) ACF(LN,TB,AB,11) ACF(LN,TC,AC,12) \ ACF(LN,TD,AD,13) ACF(LN,TE,AE,14) ACF(LN,TF,AF,15) ACF(LN,TG,AG,16) \ ACF(LN,TH,AH,17) ACF(LN,TI,AI,18) ACF(LN,TJ,AJ,19) ACF(LN,TK,AK,20) \ CFC_(UN,LN)( CFARGTA20(AACF,JCF,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK) ); \ WCF(T1,A1,1) WCF(T2,A2,2) WCF(T3,A3,3) WCF(T4,A4,4) WCF(T5,A5,5) WCF(T6,A6,6) \ WCF(T7,A7,7) WCF(T8,A8,8) WCF(T9,A9,9) WCF(TA,AA,10) WCF(TB,AB,11) WCF(TC,AC,12) \ WCF(TD,AD,13) WCF(TE,AE,14) WCF(TF,AF,15) WCF(TG,AG,16) WCF(TH,AH,17) WCF(TI,AI,18) \ WCF(TJ,AJ,19) WCF(TK,AK,20) }while(0) #endif #endif /* MAX_PREPRO_ARGS */ #if MAX_PREPRO_ARGS>31 #define CCALLSFSUB21(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK,AL)\ CCALLSFSUB27(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK,AL,0,0,0,0,0,0) #define CCALLSFSUB22(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK,AL,AM)\ CCALLSFSUB27(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,CF_0,CF_0,CF_0,CF_0,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK,AL,AM,0,0,0,0,0) #define CCALLSFSUB23(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK,AL,AM,AN)\ CCALLSFSUB27(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,CF_0,CF_0,CF_0,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK,AL,AM,AN,0,0,0,0) #define CCALLSFSUB24(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK,AL,AM,AN,AO)\ CCALLSFSUB27(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,CF_0,CF_0,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK,AL,AM,AN,AO,0,0,0) #define CCALLSFSUB25(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK,AL,AM,AN,AO,AP)\ CCALLSFSUB27(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,CF_0,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK,AL,AM,AN,AO,AP,0,0) #define CCALLSFSUB26(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK,AL,AM,AN,AO,AP,AQ)\ CCALLSFSUB27(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK,AL,AM,AN,AO,AP,AQ,0) #ifdef CFSUBASFUN #define CCALLSFSUB27(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR, \ A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK,AL,AM,AN,AO,AP,AQ,AR) \ CCALLSFFUN27(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR, \ A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK,AL,AM,AN,AO,AP,AQ,AR) #else #define CCALLSFSUB27(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR, \ A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK,AL,AM,AN,AO,AP,AQ,AR) \ do{VVCF(T1,A1,B1) VVCF(T2,A2,B2) VVCF(T3,A3,B3) VVCF(T4,A4,B4) VVCF(T5,A5,B5) \ VVCF(T6,A6,B6) VVCF(T7,A7,B7) VVCF(T8,A8,B8) VVCF(T9,A9,B9) VVCF(TA,AA,B10) \ VVCF(TB,AB,B11) VVCF(TC,AC,B12) VVCF(TD,AD,B13) VVCF(TE,AE,B14) VVCF(TF,AF,B15) \ VVCF(TG,AG,B16) VVCF(TH,AH,B17) VVCF(TI,AI,B18) VVCF(TJ,AJ,B19) VVCF(TK,AK,B20) \ VVCF(TL,AL,B21) VVCF(TM,AM,B22) VVCF(TN,AN,B23) VVCF(TO,AO,B24) VVCF(TP,AP,B25) \ VVCF(TQ,AQ,B26) VVCF(TR,AR,B27) \ CPPPROTOCLSFSUB27(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR) \ ACF(LN,T1,A1,1) ACF(LN,T2,A2,2) ACF(LN,T3,A3,3) ACF(LN,T4,A4,4) \ ACF(LN,T5,A5,5) ACF(LN,T6,A6,6) ACF(LN,T7,A7,7) ACF(LN,T8,A8,8) \ ACF(LN,T9,A9,9) ACF(LN,TA,AA,10) ACF(LN,TB,AB,11) ACF(LN,TC,AC,12) \ ACF(LN,TD,AD,13) ACF(LN,TE,AE,14) ACF(LN,TF,AF,15) ACF(LN,TG,AG,16) \ ACF(LN,TH,AH,17) ACF(LN,TI,AI,18) ACF(LN,TJ,AJ,19) ACF(LN,TK,AK,20) \ ACF(LN,TL,AL,21) ACF(LN,TM,AM,22) ACF(LN,TN,AN,23) ACF(LN,TO,AO,24) \ ACF(LN,TP,AP,25) ACF(LN,TQ,AQ,26) ACF(LN,TR,AR,27) \ CFC_(UN,LN)( CFARGTA27(AACF,JCF,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR,\ A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK,AL,AM,AN,AO,AP,AQ,AR) ); \ WCF(T1,A1,1) WCF(T2,A2,2) WCF(T3,A3,3) WCF(T4,A4,4) WCF(T5,A5,5) WCF(T6,A6,6) \ WCF(T7,A7,7) WCF(T8,A8,8) WCF(T9,A9,9) WCF(TA,AA,10) WCF(TB,AB,11) WCF(TC,AC,12) \ WCF(TD,AD,13) WCF(TE,AE,14) WCF(TF,AF,15) WCF(TG,AG,16) WCF(TH,AH,17) WCF(TI,AI,18) \ WCF(TJ,AJ,19) WCF(TK,AK,20) WCF(TL,AL,21) WCF(TM,AM,22) WCF(TN,AN,23) WCF(TO,AO,24) \ WCF(TP,AP,25) WCF(TQ,AQ,26) WCF(TR,AR,27) }while(0) #endif #endif /* MAX_PREPRO_ARGS */ /*-------------------------------------------------------------------------*/ /* UTILITIES FOR C TO CALL FORTRAN FUNCTIONS */ /*N.B. PROTOCCALLSFFUNn(..) generates code, whether or not the FORTRAN function is called. Therefore, especially for creator's of C header files for large FORTRAN libraries which include many functions, to reduce compile time and object code size, it may be desirable to create preprocessor directives to allow users to create code for only those functions which they use. */ /* The following defines the maximum length string that a function can return. Of course it may be undefine-d and re-define-d before individual PROTOCCALLSFFUNn(..) as required. It would also be nice to have this derived from the individual machines' limits. */ #define MAX_LEN_FORTRAN_FUNCTION_STRING 0x4FE /* The following defines a character used by CFORTRAN.H to flag the end of a string coming out of a FORTRAN routine. */ #define CFORTRAN_NON_CHAR 0x7F #ifdef OLD_VAXC /* Prevent %CC-I-PARAMNOTUSED. */ #pragma nostandard #endif #define _SEP_(TN,C,cfCOMMA) _(__SEP_,C)(TN,cfCOMMA) #define __SEP_0(TN,cfCOMMA) #define __SEP_1(TN,cfCOMMA) _Icf(2,SEP,TN,cfCOMMA,0) #define INT_cfSEP(T,B) _(A,B) #define INTV_cfSEP(T,B) INT_cfSEP(T,B) #define INTVV_cfSEP(T,B) INT_cfSEP(T,B) #define INTVVV_cfSEP(T,B) INT_cfSEP(T,B) #define INTVVVV_cfSEP(T,B) INT_cfSEP(T,B) #define INTVVVVV_cfSEP(T,B) INT_cfSEP(T,B) #define INTVVVVVV_cfSEP(T,B) INT_cfSEP(T,B) #define INTVVVVVVV_cfSEP(T,B) INT_cfSEP(T,B) #define PINT_cfSEP(T,B) INT_cfSEP(T,B) #define PVOID_cfSEP(T,B) INT_cfSEP(T,B) #define ROUTINE_cfSEP(T,B) INT_cfSEP(T,B) #define SIMPLE_cfSEP(T,B) INT_cfSEP(T,B) #define VOID_cfSEP(T,B) INT_cfSEP(T,B) /* For FORTRAN calls C subr.s.*/ #define STRING_cfSEP(T,B) INT_cfSEP(T,B) #define STRINGV_cfSEP(T,B) INT_cfSEP(T,B) #define PSTRING_cfSEP(T,B) INT_cfSEP(T,B) #define PSTRINGV_cfSEP(T,B) INT_cfSEP(T,B) #define PNSTRING_cfSEP(T,B) INT_cfSEP(T,B) #define PPSTRING_cfSEP(T,B) INT_cfSEP(T,B) #define ZTRINGV_cfSEP(T,B) INT_cfSEP(T,B) #define PZTRINGV_cfSEP(T,B) INT_cfSEP(T,B) #if defined(SIGNED_BYTE) || !defined(UNSIGNED_BYTE) #ifdef OLD_VAXC #define INTEGER_BYTE char /* Old VAXC barfs on 'signed char' */ #else #define INTEGER_BYTE signed char /* default */ #endif #else #define INTEGER_BYTE unsigned char #endif #define BYTEVVVVVVV_cfTYPE INTEGER_BYTE #define DOUBLEVVVVVVV_cfTYPE DOUBLE_PRECISION #define FLOATVVVVVVV_cfTYPE FORTRAN_REAL #define INTVVVVVVV_cfTYPE int #define LOGICALVVVVVVV_cfTYPE int #define LONGVVVVVVV_cfTYPE long #define LONGLONGVVVVVVV_cfTYPE LONGLONG /* added by MR December 2005 */ #define SHORTVVVVVVV_cfTYPE short #define PBYTE_cfTYPE INTEGER_BYTE #define PDOUBLE_cfTYPE DOUBLE_PRECISION #define PFLOAT_cfTYPE FORTRAN_REAL #define PINT_cfTYPE int #define PLOGICAL_cfTYPE int #define PLONG_cfTYPE long #define PLONGLONG_cfTYPE LONGLONG /* added by MR December 2005 */ #define PSHORT_cfTYPE short #define CFARGS0(A,T,V,W,X,Y,Z) _3(T,_cf,A) #define CFARGS1(A,T,V,W,X,Y,Z) _3(T,_cf,A)(V) #define CFARGS2(A,T,V,W,X,Y,Z) _3(T,_cf,A)(V,W) #define CFARGS3(A,T,V,W,X,Y,Z) _3(T,_cf,A)(V,W,X) #define CFARGS4(A,T,V,W,X,Y,Z) _3(T,_cf,A)(V,W,X,Y) #define CFARGS5(A,T,V,W,X,Y,Z) _3(T,_cf,A)(V,W,X,Y,Z) #define _Icf(N,T,I,X,Y) _(I,_cfINT)(N,T,I,X,Y,0) #define _Icf4(N,T,I,X,Y,Z) _(I,_cfINT)(N,T,I,X,Y,Z) #define BYTE_cfINT(N,A,B,X,Y,Z) DOUBLE_cfINT(N,A,B,X,Y,Z) #define DOUBLE_cfINT(N,A,B,X,Y,Z) _(CFARGS,N)(A,INT,B,X,Y,Z,0) #define FLOAT_cfINT(N,A,B,X,Y,Z) DOUBLE_cfINT(N,A,B,X,Y,Z) #define INT_cfINT(N,A,B,X,Y,Z) DOUBLE_cfINT(N,A,B,X,Y,Z) #define LOGICAL_cfINT(N,A,B,X,Y,Z) DOUBLE_cfINT(N,A,B,X,Y,Z) #define LONG_cfINT(N,A,B,X,Y,Z) DOUBLE_cfINT(N,A,B,X,Y,Z) #define LONGLONG_cfINT(N,A,B,X,Y,Z) DOUBLE_cfINT(N,A,B,X,Y,Z) /* added by MR December 2005 */ #define SHORT_cfINT(N,A,B,X,Y,Z) DOUBLE_cfINT(N,A,B,X,Y,Z) #define PBYTE_cfINT(N,A,B,X,Y,Z) PDOUBLE_cfINT(N,A,B,X,Y,Z) #define PDOUBLE_cfINT(N,A,B,X,Y,Z) _(CFARGS,N)(A,PINT,B,X,Y,Z,0) #define PFLOAT_cfINT(N,A,B,X,Y,Z) PDOUBLE_cfINT(N,A,B,X,Y,Z) #define PINT_cfINT(N,A,B,X,Y,Z) PDOUBLE_cfINT(N,A,B,X,Y,Z) #define PLOGICAL_cfINT(N,A,B,X,Y,Z) PDOUBLE_cfINT(N,A,B,X,Y,Z) #define PLONG_cfINT(N,A,B,X,Y,Z) PDOUBLE_cfINT(N,A,B,X,Y,Z) #define PLONGLONG_cfINT(N,A,B,X,Y,Z) PDOUBLE_cfINT(N,A,B,X,Y,Z) /* added by MR December 2005 */ #define PSHORT_cfINT(N,A,B,X,Y,Z) PDOUBLE_cfINT(N,A,B,X,Y,Z) #define BYTEV_cfINT(N,A,B,X,Y,Z) DOUBLEV_cfINT(N,A,B,X,Y,Z) #define BYTEVV_cfINT(N,A,B,X,Y,Z) DOUBLEVV_cfINT(N,A,B,X,Y,Z) #define BYTEVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVV_cfINT(N,A,B,X,Y,Z) #define BYTEVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVV_cfINT(N,A,B,X,Y,Z) #define BYTEVVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVVV_cfINT(N,A,B,X,Y,Z) #define BYTEVVVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVVVV_cfINT(N,A,B,X,Y,Z) #define BYTEVVVVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVVVVV_cfINT(N,A,B,X,Y,Z) #define DOUBLEV_cfINT(N,A,B,X,Y,Z) _(CFARGS,N)(A,INTV,B,X,Y,Z,0) #define DOUBLEVV_cfINT(N,A,B,X,Y,Z) _(CFARGS,N)(A,INTVV,B,X,Y,Z,0) #define DOUBLEVVV_cfINT(N,A,B,X,Y,Z) _(CFARGS,N)(A,INTVVV,B,X,Y,Z,0) #define DOUBLEVVVV_cfINT(N,A,B,X,Y,Z) _(CFARGS,N)(A,INTVVVV,B,X,Y,Z,0) #define DOUBLEVVVVV_cfINT(N,A,B,X,Y,Z) _(CFARGS,N)(A,INTVVVVV,B,X,Y,Z,0) #define DOUBLEVVVVVV_cfINT(N,A,B,X,Y,Z) _(CFARGS,N)(A,INTVVVVVV,B,X,Y,Z,0) #define DOUBLEVVVVVVV_cfINT(N,A,B,X,Y,Z) _(CFARGS,N)(A,INTVVVVVVV,B,X,Y,Z,0) #define FLOATV_cfINT(N,A,B,X,Y,Z) DOUBLEV_cfINT(N,A,B,X,Y,Z) #define FLOATVV_cfINT(N,A,B,X,Y,Z) DOUBLEVV_cfINT(N,A,B,X,Y,Z) #define FLOATVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVV_cfINT(N,A,B,X,Y,Z) #define FLOATVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVV_cfINT(N,A,B,X,Y,Z) #define FLOATVVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVVV_cfINT(N,A,B,X,Y,Z) #define FLOATVVVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVVVV_cfINT(N,A,B,X,Y,Z) #define FLOATVVVVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVVVVV_cfINT(N,A,B,X,Y,Z) #define INTV_cfINT(N,A,B,X,Y,Z) DOUBLEV_cfINT(N,A,B,X,Y,Z) #define INTVV_cfINT(N,A,B,X,Y,Z) DOUBLEVV_cfINT(N,A,B,X,Y,Z) #define INTVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVV_cfINT(N,A,B,X,Y,Z) #define INTVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVV_cfINT(N,A,B,X,Y,Z) #define INTVVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVVV_cfINT(N,A,B,X,Y,Z) #define INTVVVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVVVV_cfINT(N,A,B,X,Y,Z) #define INTVVVVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVVVVV_cfINT(N,A,B,X,Y,Z) #define LOGICALV_cfINT(N,A,B,X,Y,Z) DOUBLEV_cfINT(N,A,B,X,Y,Z) #define LOGICALVV_cfINT(N,A,B,X,Y,Z) DOUBLEVV_cfINT(N,A,B,X,Y,Z) #define LOGICALVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVV_cfINT(N,A,B,X,Y,Z) #define LOGICALVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVV_cfINT(N,A,B,X,Y,Z) #define LOGICALVVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVVV_cfINT(N,A,B,X,Y,Z) #define LOGICALVVVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVVVV_cfINT(N,A,B,X,Y,Z) #define LOGICALVVVVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVVVVV_cfINT(N,A,B,X,Y,Z) #define LONGV_cfINT(N,A,B,X,Y,Z) DOUBLEV_cfINT(N,A,B,X,Y,Z) #define LONGVV_cfINT(N,A,B,X,Y,Z) DOUBLEVV_cfINT(N,A,B,X,Y,Z) #define LONGVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVV_cfINT(N,A,B,X,Y,Z) #define LONGVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVV_cfINT(N,A,B,X,Y,Z) #define LONGVVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVVV_cfINT(N,A,B,X,Y,Z) #define LONGVVVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVVVV_cfINT(N,A,B,X,Y,Z) #define LONGVVVVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVVVVV_cfINT(N,A,B,X,Y,Z) #define LONGLONGV_cfINT(N,A,B,X,Y,Z) DOUBLEV_cfINT(N,A,B,X,Y,Z) /* added by MR December 2005 */ #define LONGLONGVV_cfINT(N,A,B,X,Y,Z) DOUBLEVV_cfINT(N,A,B,X,Y,Z) /* added by MR December 2005 */ #define LONGLONGVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVV_cfINT(N,A,B,X,Y,Z) /* added by MR December 2005 */ #define LONGLONGVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVV_cfINT(N,A,B,X,Y,Z) /* added by MR December 2005 */ #define LONGLONGVVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVVV_cfINT(N,A,B,X,Y,Z) /* added by MR December 2005 */ #define LONGLONGVVVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVVVV_cfINT(N,A,B,X,Y,Z) /* added by MR December 2005 */ #define LONGLONGVVVVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVVVVV_cfINT(N,A,B,X,Y,Z) /* added by MR December 2005 */ #define SHORTV_cfINT(N,A,B,X,Y,Z) DOUBLEV_cfINT(N,A,B,X,Y,Z) #define SHORTVV_cfINT(N,A,B,X,Y,Z) DOUBLEVV_cfINT(N,A,B,X,Y,Z) #define SHORTVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVV_cfINT(N,A,B,X,Y,Z) #define SHORTVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVV_cfINT(N,A,B,X,Y,Z) #define SHORTVVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVVV_cfINT(N,A,B,X,Y,Z) #define SHORTVVVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVVVV_cfINT(N,A,B,X,Y,Z) #define SHORTVVVVVVV_cfINT(N,A,B,X,Y,Z) DOUBLEVVVVVVV_cfINT(N,A,B,X,Y,Z) #define PVOID_cfINT(N,A,B,X,Y,Z) _(CFARGS,N)(A,B,B,X,Y,Z,0) #define ROUTINE_cfINT(N,A,B,X,Y,Z) PVOID_cfINT(N,A,B,X,Y,Z) /*CRAY coughs on the first, i.e. the usual trouble of not being able to define macros to macros with arguments. New ultrix is worse, it coughs on all such uses. */ /*#define SIMPLE_cfINT PVOID_cfINT*/ #define SIMPLE_cfINT(N,A,B,X,Y,Z) PVOID_cfINT(N,A,B,X,Y,Z) #define VOID_cfINT(N,A,B,X,Y,Z) PVOID_cfINT(N,A,B,X,Y,Z) #define STRING_cfINT(N,A,B,X,Y,Z) PVOID_cfINT(N,A,B,X,Y,Z) #define STRINGV_cfINT(N,A,B,X,Y,Z) PVOID_cfINT(N,A,B,X,Y,Z) #define PSTRING_cfINT(N,A,B,X,Y,Z) PVOID_cfINT(N,A,B,X,Y,Z) #define PSTRINGV_cfINT(N,A,B,X,Y,Z) PVOID_cfINT(N,A,B,X,Y,Z) #define PNSTRING_cfINT(N,A,B,X,Y,Z) PVOID_cfINT(N,A,B,X,Y,Z) #define PPSTRING_cfINT(N,A,B,X,Y,Z) PVOID_cfINT(N,A,B,X,Y,Z) #define ZTRINGV_cfINT(N,A,B,X,Y,Z) PVOID_cfINT(N,A,B,X,Y,Z) #define PZTRINGV_cfINT(N,A,B,X,Y,Z) PVOID_cfINT(N,A,B,X,Y,Z) #define CF_0_cfINT(N,A,B,X,Y,Z) #define UCF(TN,I,C) _SEP_(TN,C,cfCOMMA) _Icf(2,U,TN,_(A,I),0) #define UUCF(TN,I,C) _SEP_(TN,C,cfCOMMA) _SEP_(TN,1,I) #define UUUCF(TN,I,C) _SEP_(TN,C,cfCOLON) _Icf(2,U,TN,_(A,I),0) #define INT_cfU(T,A) _(T,VVVVVVV_cfTYPE) A #define INTV_cfU(T,A) _(T,VVVVVV_cfTYPE) * A #define INTVV_cfU(T,A) _(T,VVVVV_cfTYPE) * A #define INTVVV_cfU(T,A) _(T,VVVV_cfTYPE) * A #define INTVVVV_cfU(T,A) _(T,VVV_cfTYPE) * A #define INTVVVVV_cfU(T,A) _(T,VV_cfTYPE) * A #define INTVVVVVV_cfU(T,A) _(T,V_cfTYPE) * A #define INTVVVVVVV_cfU(T,A) _(T,_cfTYPE) * A #define PINT_cfU(T,A) _(T,_cfTYPE) * A #define PVOID_cfU(T,A) void *A #define ROUTINE_cfU(T,A) void (*A)(CF_NULL_PROTO) #define VOID_cfU(T,A) void A /* Needed for C calls FORTRAN sub.s. */ #define STRING_cfU(T,A) char *A /* via VOID and wrapper. */ #define STRINGV_cfU(T,A) char *A #define PSTRING_cfU(T,A) char *A #define PSTRINGV_cfU(T,A) char *A #define ZTRINGV_cfU(T,A) char *A #define PZTRINGV_cfU(T,A) char *A /* VOID breaks U into U and UU. */ #define INT_cfUU(T,A) _(T,VVVVVVV_cfTYPE) A #define VOID_cfUU(T,A) /* Needed for FORTRAN calls C sub.s. */ #define STRING_cfUU(T,A) char *A #define BYTE_cfPU(A) CFextern INTEGER_BYTE FCALLSC_QUALIFIER A #define DOUBLE_cfPU(A) CFextern DOUBLE_PRECISION FCALLSC_QUALIFIER A #if ! (defined(FLOATFUNCTIONTYPE)&&defined(ASSIGNFLOAT)&&defined(RETURNFLOAT)) #if defined (f2cFortran) && ! defined (gFortran) /* f2c/g77 return double from FORTRAN REAL functions. (KMCCARTY, 2005/12/09) */ #define FLOAT_cfPU(A) CFextern DOUBLE_PRECISION FCALLSC_QUALIFIER A #else #define FLOAT_cfPU(A) CFextern FORTRAN_REAL FCALLSC_QUALIFIER A #endif #else #define FLOAT_cfPU(A) CFextern FLOATFUNCTIONTYPE FCALLSC_QUALIFIER A #endif #define INT_cfPU(A) CFextern int FCALLSC_QUALIFIER A #define LOGICAL_cfPU(A) CFextern int FCALLSC_QUALIFIER A #define LONG_cfPU(A) CFextern long FCALLSC_QUALIFIER A #define SHORT_cfPU(A) CFextern short FCALLSC_QUALIFIER A #define STRING_cfPU(A) CFextern void FCALLSC_QUALIFIER A #define VOID_cfPU(A) CFextern void FCALLSC_QUALIFIER A #define BYTE_cfE INTEGER_BYTE A0; #define DOUBLE_cfE DOUBLE_PRECISION A0; #if ! (defined(FLOATFUNCTIONTYPE)&&defined(ASSIGNFLOAT)&&defined(RETURNFLOAT)) #define FLOAT_cfE FORTRAN_REAL A0; #else #define FLOAT_cfE FORTRAN_REAL AA0; FLOATFUNCTIONTYPE A0; #endif #define INT_cfE int A0; #define LOGICAL_cfE int A0; #define LONG_cfE long A0; #define SHORT_cfE short A0; #define VOID_cfE #ifdef vmsFortran #define STRING_cfE static char AA0[1+MAX_LEN_FORTRAN_FUNCTION_STRING]; \ static fstring A0 = \ {MAX_LEN_FORTRAN_FUNCTION_STRING,DSC$K_DTYPE_T,DSC$K_CLASS_S,AA0};\ memset(AA0, CFORTRAN_NON_CHAR, MAX_LEN_FORTRAN_FUNCTION_STRING);\ *(AA0+MAX_LEN_FORTRAN_FUNCTION_STRING)='\0'; #else #ifdef CRAYFortran #define STRING_cfE static char AA0[1+MAX_LEN_FORTRAN_FUNCTION_STRING]; \ static _fcd A0; *(AA0+MAX_LEN_FORTRAN_FUNCTION_STRING)='\0';\ memset(AA0,CFORTRAN_NON_CHAR, MAX_LEN_FORTRAN_FUNCTION_STRING);\ A0 = _cptofcd(AA0,MAX_LEN_FORTRAN_FUNCTION_STRING); #else /* 'cc: SC3.0.1 13 Jul 1994' barfs on char A0[0x4FE+1]; * char A0[0x4FE +1]; char A0[1+0x4FE]; are both OK. */ #define STRING_cfE static char A0[1+MAX_LEN_FORTRAN_FUNCTION_STRING]; \ memset(A0, CFORTRAN_NON_CHAR, \ MAX_LEN_FORTRAN_FUNCTION_STRING); \ *(A0+MAX_LEN_FORTRAN_FUNCTION_STRING)='\0'; #endif #endif /* ESTRING must use static char. array which is guaranteed to exist after function returns. */ /* N.B.i) The diff. for 0 (Zero) and >=1 arguments. ii)That the following create an unmatched bracket, i.e. '(', which must of course be matched in the call. iii)Commas must be handled very carefully */ #define INT_cfGZ(T,UN,LN) A0=CFC_(UN,LN)( #define VOID_cfGZ(T,UN,LN) CFC_(UN,LN)( #ifdef vmsFortran #define STRING_cfGZ(T,UN,LN) CFC_(UN,LN)(&A0 #else #if defined(CRAYFortran) || defined(AbsoftUNIXFortran) || defined(AbsoftProFortran) #define STRING_cfGZ(T,UN,LN) CFC_(UN,LN)( A0 #else #define STRING_cfGZ(T,UN,LN) CFC_(UN,LN)( A0,MAX_LEN_FORTRAN_FUNCTION_STRING #endif #endif #define INT_cfG(T,UN,LN) INT_cfGZ(T,UN,LN) #define VOID_cfG(T,UN,LN) VOID_cfGZ(T,UN,LN) #define STRING_cfG(T,UN,LN) STRING_cfGZ(T,UN,LN), /*, is only diff. from _cfG*/ #define BYTEVVVVVVV_cfPP #define INTVVVVVVV_cfPP /* These complement FLOATVVVVVVV_cfPP. */ #define DOUBLEVVVVVVV_cfPP #define LOGICALVVVVVVV_cfPP #define LONGVVVVVVV_cfPP #define SHORTVVVVVVV_cfPP #define PBYTE_cfPP #define PINT_cfPP #define PDOUBLE_cfPP #define PLOGICAL_cfPP #define PLONG_cfPP #define PSHORT_cfPP #define PFLOAT_cfPP FLOATVVVVVVV_cfPP #define BCF(TN,AN,C) _SEP_(TN,C,cfCOMMA) _Icf(2,B,TN,AN,0) #define INT_cfB(T,A) (_(T,VVVVVVV_cfTYPE)) A #define INTV_cfB(T,A) A #define INTVV_cfB(T,A) (A)[0] #define INTVVV_cfB(T,A) (A)[0][0] #define INTVVVV_cfB(T,A) (A)[0][0][0] #define INTVVVVV_cfB(T,A) (A)[0][0][0][0] #define INTVVVVVV_cfB(T,A) (A)[0][0][0][0][0] #define INTVVVVVVV_cfB(T,A) (A)[0][0][0][0][0][0] #define PINT_cfB(T,A) _(T,_cfPP)&A #define STRING_cfB(T,A) (char *) A #define STRINGV_cfB(T,A) (char *) A #define PSTRING_cfB(T,A) (char *) A #define PSTRINGV_cfB(T,A) (char *) A #define PVOID_cfB(T,A) (void *) A #define ROUTINE_cfB(T,A) (cfCAST_FUNCTION)A #define ZTRINGV_cfB(T,A) (char *) A #define PZTRINGV_cfB(T,A) (char *) A #define SCF(TN,NAME,I,A) _(TN,_cfSTR)(3,S,NAME,I,A,0,0) #define DEFAULT_cfS(M,I,A) #define LOGICAL_cfS(M,I,A) #define PLOGICAL_cfS(M,I,A) #define STRING_cfS(M,I,A) ,sizeof(A) #define STRINGV_cfS(M,I,A) ,( (unsigned)0xFFFF*firstindexlength(A) \ +secondindexlength(A)) #define PSTRING_cfS(M,I,A) ,sizeof(A) #define PSTRINGV_cfS(M,I,A) STRINGV_cfS(M,I,A) #define ZTRINGV_cfS(M,I,A) #define PZTRINGV_cfS(M,I,A) #define HCF(TN,I) _(TN,_cfSTR)(3,H,cfCOMMA, H,_(C,I),0,0) #define HHCF(TN,I) _(TN,_cfSTR)(3,H,cfCOMMA,HH,_(C,I),0,0) #define HHHCF(TN,I) _(TN,_cfSTR)(3,H,cfCOLON, H,_(C,I),0,0) #define H_CF_SPECIAL unsigned #define HH_CF_SPECIAL #define DEFAULT_cfH(M,I,A) #define LOGICAL_cfH(S,U,B) #define PLOGICAL_cfH(S,U,B) #define STRING_cfH(S,U,B) _(A,S) _(U,_CF_SPECIAL) B #define STRINGV_cfH(S,U,B) STRING_cfH(S,U,B) #define PSTRING_cfH(S,U,B) STRING_cfH(S,U,B) #define PSTRINGV_cfH(S,U,B) STRING_cfH(S,U,B) #define PNSTRING_cfH(S,U,B) STRING_cfH(S,U,B) #define PPSTRING_cfH(S,U,B) STRING_cfH(S,U,B) #define ZTRINGV_cfH(S,U,B) #define PZTRINGV_cfH(S,U,B) /* Need VOID_cfSTR because Absoft forced function types go through _cfSTR. */ /* No spaces inside expansion. They screws up macro catenation kludge. */ #define VOID_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define BYTE_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define DOUBLE_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define FLOAT_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define INT_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define LOGICAL_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,LOGICAL,A,B,C,D,E) #define LONG_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define LONGLONG_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) /* added by MR December 2005 */ #define SHORT_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define BYTEV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define BYTEVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define BYTEVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define BYTEVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define BYTEVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define BYTEVVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define BYTEVVVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define DOUBLEV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define DOUBLEVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define DOUBLEVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define DOUBLEVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define DOUBLEVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define DOUBLEVVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define DOUBLEVVVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define FLOATV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define FLOATVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define FLOATVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define FLOATVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define FLOATVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define FLOATVVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define FLOATVVVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define INTV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define INTVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define INTVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define INTVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define INTVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define INTVVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define INTVVVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define LOGICALV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define LOGICALVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define LOGICALVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define LOGICALVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define LOGICALVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define LOGICALVVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define LOGICALVVVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define LONGV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define LONGVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define LONGVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define LONGVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define LONGVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define LONGVVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define LONGVVVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define LONGLONGV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) /* added by MR December 2005 */ #define LONGLONGVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) /* added by MR December 2005 */ #define LONGLONGVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) /* added by MR December 2005 */ #define LONGLONGVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) /* added by MR December 2005 */ #define LONGLONGVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) /* added by MR December 2005 */ #define LONGLONGVVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) /* added by MR December 2005 */ #define LONGLONGVVVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) /* added by MR December 2005 */ #define SHORTV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define SHORTVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define SHORTVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define SHORTVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define SHORTVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define SHORTVVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define SHORTVVVVVVV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define PBYTE_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define PDOUBLE_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define PFLOAT_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define PINT_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define PLOGICAL_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,PLOGICAL,A,B,C,D,E) #define PLONG_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define PLONGLONG_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) /* added by MR December 2005 */ #define PSHORT_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define STRING_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,STRING,A,B,C,D,E) #define PSTRING_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,PSTRING,A,B,C,D,E) #define STRINGV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,STRINGV,A,B,C,D,E) #define PSTRINGV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,PSTRINGV,A,B,C,D,E) #define PNSTRING_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,PNSTRING,A,B,C,D,E) #define PPSTRING_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,PPSTRING,A,B,C,D,E) #define PVOID_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define ROUTINE_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define SIMPLE_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,DEFAULT,A,B,C,D,E) #define ZTRINGV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,ZTRINGV,A,B,C,D,E) #define PZTRINGV_cfSTR(N,T,A,B,C,D,E) _(CFARGS,N)(T,PZTRINGV,A,B,C,D,E) #define CF_0_cfSTR(N,T,A,B,C,D,E) /* See ACF table comments, which explain why CCF was split into two. */ #define CCF(NAME,TN,I) _(TN,_cfSTR)(5,C,NAME,I,_(A,I),_(B,I),_(C,I)) #define DEFAULT_cfC(M,I,A,B,C) #define LOGICAL_cfC(M,I,A,B,C) A=C2FLOGICAL( A); #define PLOGICAL_cfC(M,I,A,B,C) *A=C2FLOGICAL(*A); #ifdef vmsFortran #define STRING_cfC(M,I,A,B,C) (B.clen=strlen(A),B.f.dsc$a_pointer=A, \ C==sizeof(char*)||C==(unsigned)(B.clen+1)?B.f.dsc$w_length=B.clen: \ (memset((A)+B.clen,' ',C-B.clen-1),A[B.f.dsc$w_length=C-1]='\0')); /* PSTRING_cfC to beware of array A which does not contain any \0. */ #define PSTRING_cfC(M,I,A,B,C) (B.dsc$a_pointer=A, C==sizeof(char*) ? \ B.dsc$w_length=strlen(A): (A[C-1]='\0',B.dsc$w_length=strlen(A), \ memset((A)+B.dsc$w_length,' ',C-B.dsc$w_length-1), B.dsc$w_length=C-1)); #else #define STRING_cfC(M,I,A,B,C) (B.nombre=A,B.clen=strlen(A), \ C==sizeof(char*)||C==(unsigned)(B.clen+1)?B.flen=B.clen: \ (memset(B.nombre+B.clen,' ',C-B.clen-1),B.nombre[B.flen=C-1]='\0')); #define PSTRING_cfC(M,I,A,B,C) (C==sizeof(char*)? B=strlen(A): \ (A[C-1]='\0',B=strlen(A),memset((A)+B,' ',C-B-1),B=C-1)); #endif /* For CRAYFortran for (P)STRINGV_cfC, B.fs is set, but irrelevant. */ #define STRINGV_cfC(M,I,A,B,C) \ AATRINGV_cfA( A,B,(C/0xFFFF)*(C%0xFFFF),C/0xFFFF,C%0xFFFF) #define PSTRINGV_cfC(M,I,A,B,C) \ APATRINGV_cfA( A,B,(C/0xFFFF)*(C%0xFFFF),C/0xFFFF,C%0xFFFF) #define ZTRINGV_cfC(M,I,A,B,C) \ AATRINGV_cfA( A,B, (_3(M,_ELEMS_,I))*((_3(M,_ELEMLEN_,I))+1), \ (_3(M,_ELEMS_,I)), (_3(M,_ELEMLEN_,I))+1 ) #define PZTRINGV_cfC(M,I,A,B,C) \ APATRINGV_cfA( A,B, (_3(M,_ELEMS_,I))*((_3(M,_ELEMLEN_,I))+1), \ (_3(M,_ELEMS_,I)), (_3(M,_ELEMLEN_,I))+1 ) #define BYTE_cfCCC(A,B) &A #define DOUBLE_cfCCC(A,B) &A #if !defined(__CF__KnR) #define FLOAT_cfCCC(A,B) &A /* Although the VAX doesn't, at least the */ #else /* HP and K&R mips promote float arg.'s of */ #define FLOAT_cfCCC(A,B) &B /* unprototyped functions to double. Cannot */ #endif /* use A here to pass the argument to FORTRAN. */ #define INT_cfCCC(A,B) &A #define LOGICAL_cfCCC(A,B) &A #define LONG_cfCCC(A,B) &A #define SHORT_cfCCC(A,B) &A #define PBYTE_cfCCC(A,B) A #define PDOUBLE_cfCCC(A,B) A #define PFLOAT_cfCCC(A,B) A #define PINT_cfCCC(A,B) A #define PLOGICAL_cfCCC(A,B) B=A /* B used to keep a common W table. */ #define PLONG_cfCCC(A,B) A #define PSHORT_cfCCC(A,B) A #define CCCF(TN,I,M) _SEP_(TN,M,cfCOMMA) _Icf(3,CC,TN,_(A,I),_(B,I)) #define INT_cfCC(T,A,B) _(T,_cfCCC)(A,B) #define INTV_cfCC(T,A,B) A #define INTVV_cfCC(T,A,B) A #define INTVVV_cfCC(T,A,B) A #define INTVVVV_cfCC(T,A,B) A #define INTVVVVV_cfCC(T,A,B) A #define INTVVVVVV_cfCC(T,A,B) A #define INTVVVVVVV_cfCC(T,A,B) A #define PINT_cfCC(T,A,B) _(T,_cfCCC)(A,B) #define PVOID_cfCC(T,A,B) A #if defined(apolloFortran) || defined(hpuxFortran800) || defined(AbsoftUNIXFortran) #define ROUTINE_cfCC(T,A,B) &A #else #define ROUTINE_cfCC(T,A,B) A #endif #define SIMPLE_cfCC(T,A,B) A #ifdef vmsFortran #define STRING_cfCC(T,A,B) &B.f #define STRINGV_cfCC(T,A,B) &B #define PSTRING_cfCC(T,A,B) &B #define PSTRINGV_cfCC(T,A,B) &B #else #ifdef CRAYFortran #define STRING_cfCC(T,A,B) _cptofcd(A,B.flen) #define STRINGV_cfCC(T,A,B) _cptofcd(B.s,B.flen) #define PSTRING_cfCC(T,A,B) _cptofcd(A,B) #define PSTRINGV_cfCC(T,A,B) _cptofcd(A,B.flen) #else #define STRING_cfCC(T,A,B) A #define STRINGV_cfCC(T,A,B) B.fs #define PSTRING_cfCC(T,A,B) A #define PSTRINGV_cfCC(T,A,B) B.fs #endif #endif #define ZTRINGV_cfCC(T,A,B) STRINGV_cfCC(T,A,B) #define PZTRINGV_cfCC(T,A,B) PSTRINGV_cfCC(T,A,B) #define BYTE_cfX return A0; #define DOUBLE_cfX return A0; #if ! (defined(FLOATFUNCTIONTYPE)&&defined(ASSIGNFLOAT)&&defined(RETURNFLOAT)) #define FLOAT_cfX return A0; #else #define FLOAT_cfX ASSIGNFLOAT(AA0,A0); return AA0; #endif #define INT_cfX return A0; #define LOGICAL_cfX return F2CLOGICAL(A0); #define LONG_cfX return A0; #define SHORT_cfX return A0; #define VOID_cfX return ; #if defined(vmsFortran) || defined(CRAYFortran) #define STRING_cfX return kill_trailing( \ kill_trailing(AA0,CFORTRAN_NON_CHAR),' '); #else #define STRING_cfX return kill_trailing( \ kill_trailing( A0,CFORTRAN_NON_CHAR),' '); #endif #define CFFUN(NAME) _(__cf__,NAME) /* Note that we don't use LN here, but we keep it for consistency. */ #define CCALLSFFUN0(UN,LN) CFFUN(UN)() #ifdef OLD_VAXC /* Allow %CC-I-PARAMNOTUSED. */ #pragma standard #endif #define CCALLSFFUN1( UN,LN,T1, A1) \ CCALLSFFUN5 (UN,LN,T1,CF_0,CF_0,CF_0,CF_0,A1,0,0,0,0) #define CCALLSFFUN2( UN,LN,T1,T2, A1,A2) \ CCALLSFFUN5 (UN,LN,T1,T2,CF_0,CF_0,CF_0,A1,A2,0,0,0) #define CCALLSFFUN3( UN,LN,T1,T2,T3, A1,A2,A3) \ CCALLSFFUN5 (UN,LN,T1,T2,T3,CF_0,CF_0,A1,A2,A3,0,0) #define CCALLSFFUN4( UN,LN,T1,T2,T3,T4, A1,A2,A3,A4)\ CCALLSFFUN5 (UN,LN,T1,T2,T3,T4,CF_0,A1,A2,A3,A4,0) #define CCALLSFFUN5( UN,LN,T1,T2,T3,T4,T5, A1,A2,A3,A4,A5) \ CCALLSFFUN10(UN,LN,T1,T2,T3,T4,T5,CF_0,CF_0,CF_0,CF_0,CF_0,A1,A2,A3,A4,A5,0,0,0,0,0) #define CCALLSFFUN6( UN,LN,T1,T2,T3,T4,T5,T6, A1,A2,A3,A4,A5,A6) \ CCALLSFFUN10(UN,LN,T1,T2,T3,T4,T5,T6,CF_0,CF_0,CF_0,CF_0,A1,A2,A3,A4,A5,A6,0,0,0,0) #define CCALLSFFUN7( UN,LN,T1,T2,T3,T4,T5,T6,T7, A1,A2,A3,A4,A5,A6,A7) \ CCALLSFFUN10(UN,LN,T1,T2,T3,T4,T5,T6,T7,CF_0,CF_0,CF_0,A1,A2,A3,A4,A5,A6,A7,0,0,0) #define CCALLSFFUN8( UN,LN,T1,T2,T3,T4,T5,T6,T7,T8, A1,A2,A3,A4,A5,A6,A7,A8) \ CCALLSFFUN10(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,CF_0,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,0,0) #define CCALLSFFUN9( UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,A1,A2,A3,A4,A5,A6,A7,A8,A9)\ CCALLSFFUN10(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,A9,0) #define CCALLSFFUN10(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA)\ CCALLSFFUN14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,CF_0,CF_0,CF_0,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,0,0,0,0) #define CCALLSFFUN11(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB)\ CCALLSFFUN14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,CF_0,CF_0,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,0,0,0) #define CCALLSFFUN12(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC)\ CCALLSFFUN14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,CF_0,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,0,0) #define CCALLSFFUN13(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD)\ CCALLSFFUN14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,CF_0,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,0) #define CCALLSFFUN14(UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,A1,A2,A3,A4,A5,A6,A7,A8,A9,AA,AB,AC,AD,AE)\ ((CFFUN(UN)( BCF(T1,A1,0) BCF(T2,A2,1) BCF(T3,A3,1) BCF(T4,A4,1) BCF(T5,A5,1) \ BCF(T6,A6,1) BCF(T7,A7,1) BCF(T8,A8,1) BCF(T9,A9,1) BCF(TA,AA,1) \ BCF(TB,AB,1) BCF(TC,AC,1) BCF(TD,AD,1) BCF(TE,AE,1) \ SCF(T1,LN,1,A1) SCF(T2,LN,2,A2) SCF(T3,LN,3,A3) SCF(T4,LN,4,A4) \ SCF(T5,LN,5,A5) SCF(T6,LN,6,A6) SCF(T7,LN,7,A7) SCF(T8,LN,8,A8) \ SCF(T9,LN,9,A9) SCF(TA,LN,10,AA) SCF(TB,LN,11,AB) SCF(TC,LN,12,AC) \ SCF(TD,LN,13,AD) SCF(TE,LN,14,AE)))) /* N.B. Create a separate function instead of using (call function, function value here) because in order to create the variables needed for the input arg.'s which may be const.'s one has to do the creation within {}, but these can never be placed within ()'s. Therefore one must create wrapper functions. gcc, on the other hand may be able to avoid the wrapper functions. */ /* Prototypes are needed to correctly handle the value returned correctly. N.B. Can only have prototype arg.'s with difficulty, a la G... table since FORTRAN functions returning strings have extra arg.'s. Don't bother, since this only causes a compiler warning to come up when one uses FCALLSCFUNn and CCALLSFFUNn for the same function in the same source code. Something done by the experts in debugging only.*/ #define PROTOCCALLSFFUN0(F,UN,LN) \ _(F,_cfPU)( CFC_(UN,LN))(CF_NULL_PROTO); \ static _Icf(2,U,F,CFFUN(UN),0)() {_(F,_cfE) _Icf(3,GZ,F,UN,LN) ABSOFT_cf1(F));_(F,_cfX)} #define PROTOCCALLSFFUN1( T0,UN,LN,T1) \ PROTOCCALLSFFUN5 (T0,UN,LN,T1,CF_0,CF_0,CF_0,CF_0) #define PROTOCCALLSFFUN2( T0,UN,LN,T1,T2) \ PROTOCCALLSFFUN5 (T0,UN,LN,T1,T2,CF_0,CF_0,CF_0) #define PROTOCCALLSFFUN3( T0,UN,LN,T1,T2,T3) \ PROTOCCALLSFFUN5 (T0,UN,LN,T1,T2,T3,CF_0,CF_0) #define PROTOCCALLSFFUN4( T0,UN,LN,T1,T2,T3,T4) \ PROTOCCALLSFFUN5 (T0,UN,LN,T1,T2,T3,T4,CF_0) #define PROTOCCALLSFFUN5( T0,UN,LN,T1,T2,T3,T4,T5) \ PROTOCCALLSFFUN10(T0,UN,LN,T1,T2,T3,T4,T5,CF_0,CF_0,CF_0,CF_0,CF_0) #define PROTOCCALLSFFUN6( T0,UN,LN,T1,T2,T3,T4,T5,T6) \ PROTOCCALLSFFUN10(T0,UN,LN,T1,T2,T3,T4,T5,T6,CF_0,CF_0,CF_0,CF_0) #define PROTOCCALLSFFUN7( T0,UN,LN,T1,T2,T3,T4,T5,T6,T7) \ PROTOCCALLSFFUN10(T0,UN,LN,T1,T2,T3,T4,T5,T6,T7,CF_0,CF_0,CF_0) #define PROTOCCALLSFFUN8( T0,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8) \ PROTOCCALLSFFUN10(T0,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,CF_0,CF_0) #define PROTOCCALLSFFUN9( T0,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9) \ PROTOCCALLSFFUN10(T0,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,CF_0) #define PROTOCCALLSFFUN10(T0,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA) \ PROTOCCALLSFFUN14(T0,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,CF_0,CF_0,CF_0,CF_0) #define PROTOCCALLSFFUN11(T0,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB) \ PROTOCCALLSFFUN14(T0,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,CF_0,CF_0,CF_0) #define PROTOCCALLSFFUN12(T0,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC) \ PROTOCCALLSFFUN14(T0,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,CF_0,CF_0) #define PROTOCCALLSFFUN13(T0,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD) \ PROTOCCALLSFFUN14(T0,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,CF_0) /* HP/UX 9.01 cc requires the blank between '_Icf(3,G,T0,UN,LN) CCCF(T1,1,0)' */ #ifndef __CF__KnR #define PROTOCCALLSFFUN14(T0,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) \ _(T0,_cfPU)(CFC_(UN,LN))(CF_NULL_PROTO); static _Icf(2,U,T0,CFFUN(UN),0)( \ CFARGT14FS(UCF,HCF,_Z,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) ) \ { CFARGT14S(VCF,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) _(T0,_cfE) \ CCF(LN,T1,1) CCF(LN,T2,2) CCF(LN,T3,3) CCF(LN,T4,4) CCF(LN,T5,5) \ CCF(LN,T6,6) CCF(LN,T7,7) CCF(LN,T8,8) CCF(LN,T9,9) CCF(LN,TA,10) \ CCF(LN,TB,11) CCF(LN,TC,12) CCF(LN,TD,13) CCF(LN,TE,14) _Icf(3,G,T0,UN,LN) \ CFARGT14(CCCF,JCF,ABSOFT_cf1(T0),T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE)); \ WCF(T1,A1,1) WCF(T2,A2,2) WCF(T3,A3,3) WCF(T4,A4,4) WCF(T5,A5,5) \ WCF(T6,A6,6) WCF(T7,A7,7) WCF(T8,A8,8) WCF(T9,A9,9) WCF(TA,A10,10) \ WCF(TB,A11,11) WCF(TC,A12,12) WCF(TD,A13,13) WCF(TE,A14,14) _(T0,_cfX)} #else #define PROTOCCALLSFFUN14(T0,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) \ _(T0,_cfPU)(CFC_(UN,LN))(CF_NULL_PROTO); static _Icf(2,U,T0,CFFUN(UN),0)( \ CFARGT14FS(UUCF,HHCF,_Z,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) ) \ CFARGT14FS(UUUCF,HHHCF,_Z,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) ; \ { CFARGT14S(VCF,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) _(T0,_cfE) \ CCF(LN,T1,1) CCF(LN,T2,2) CCF(LN,T3,3) CCF(LN,T4,4) CCF(LN,T5,5) \ CCF(LN,T6,6) CCF(LN,T7,7) CCF(LN,T8,8) CCF(LN,T9,9) CCF(LN,TA,10) \ CCF(LN,TB,11) CCF(LN,TC,12) CCF(LN,TD,13) CCF(LN,TE,14) _Icf(3,G,T0,UN,LN) \ CFARGT14(CCCF,JCF,ABSOFT_cf1(T0),T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE)); \ WCF(T1,A1,1) WCF(T2,A2,2) WCF(T3,A3,3) WCF(T4,A4,4) WCF(T5,A5,5) \ WCF(T6,A6,6) WCF(T7,A7,7) WCF(T8,A8,8) WCF(T9,A9,9) WCF(TA,A10,10) \ WCF(TB,A11,11) WCF(TC,A12,12) WCF(TD,A13,13) WCF(TE,A14,14) _(T0,_cfX)} #endif /*-------------------------------------------------------------------------*/ /* UTILITIES FOR FORTRAN TO CALL C ROUTINES */ #ifdef OLD_VAXC /* Prevent %CC-I-PARAMNOTUSED. */ #pragma nostandard #endif #if defined(vmsFortran) || defined(CRAYFortran) #define DCF(TN,I) #define DDCF(TN,I) #define DDDCF(TN,I) #else #define DCF(TN,I) HCF(TN,I) #define DDCF(TN,I) HHCF(TN,I) #define DDDCF(TN,I) HHHCF(TN,I) #endif #define QCF(TN,I) _(TN,_cfSTR)(1,Q,_(B,I), 0,0,0,0) #define DEFAULT_cfQ(B) #define LOGICAL_cfQ(B) #define PLOGICAL_cfQ(B) #define STRINGV_cfQ(B) char *B; unsigned int _(B,N); #define STRING_cfQ(B) char *B=NULL; #define PSTRING_cfQ(B) char *B=NULL; #define PSTRINGV_cfQ(B) STRINGV_cfQ(B) #define PNSTRING_cfQ(B) char *B=NULL; #define PPSTRING_cfQ(B) #ifdef __sgi /* Else SGI gives warning 182 contrary to its C LRM A.17.7 */ #define ROUTINE_orig *(void**)& #else #define ROUTINE_orig (void *) #endif #define ROUTINE_1 ROUTINE_orig #define ROUTINE_2 ROUTINE_orig #define ROUTINE_3 ROUTINE_orig #define ROUTINE_4 ROUTINE_orig #define ROUTINE_5 ROUTINE_orig #define ROUTINE_6 ROUTINE_orig #define ROUTINE_7 ROUTINE_orig #define ROUTINE_8 ROUTINE_orig #define ROUTINE_9 ROUTINE_orig #define ROUTINE_10 ROUTINE_orig #define ROUTINE_11 ROUTINE_orig #define ROUTINE_12 ROUTINE_orig #define ROUTINE_13 ROUTINE_orig #define ROUTINE_14 ROUTINE_orig #define ROUTINE_15 ROUTINE_orig #define ROUTINE_16 ROUTINE_orig #define ROUTINE_17 ROUTINE_orig #define ROUTINE_18 ROUTINE_orig #define ROUTINE_19 ROUTINE_orig #define ROUTINE_20 ROUTINE_orig #define ROUTINE_21 ROUTINE_orig #define ROUTINE_22 ROUTINE_orig #define ROUTINE_23 ROUTINE_orig #define ROUTINE_24 ROUTINE_orig #define ROUTINE_25 ROUTINE_orig #define ROUTINE_26 ROUTINE_orig #define ROUTINE_27 ROUTINE_orig #define TCF(NAME,TN,I,M) _SEP_(TN,M,cfCOMMA) _(TN,_cfT)(NAME,I,_(A,I),_(B,I),_(C,I)) #define BYTE_cfT(M,I,A,B,D) *A #define DOUBLE_cfT(M,I,A,B,D) *A #define FLOAT_cfT(M,I,A,B,D) *A #define INT_cfT(M,I,A,B,D) *A #define LOGICAL_cfT(M,I,A,B,D) F2CLOGICAL(*A) #define LONG_cfT(M,I,A,B,D) *A #define LONGLONG_cfT(M,I,A,B,D) *A /* added by MR December 2005 */ #define SHORT_cfT(M,I,A,B,D) *A #define BYTEV_cfT(M,I,A,B,D) A #define DOUBLEV_cfT(M,I,A,B,D) A #define FLOATV_cfT(M,I,A,B,D) VOIDP A #define INTV_cfT(M,I,A,B,D) A #define LOGICALV_cfT(M,I,A,B,D) A #define LONGV_cfT(M,I,A,B,D) A #define LONGLONGV_cfT(M,I,A,B,D) A /* added by MR December 2005 */ #define SHORTV_cfT(M,I,A,B,D) A #define BYTEVV_cfT(M,I,A,B,D) (void *)A /* We have to cast to void *,*/ #define BYTEVVV_cfT(M,I,A,B,D) (void *)A /* since we don't know the */ #define BYTEVVVV_cfT(M,I,A,B,D) (void *)A /* dimensions of the array. */ #define BYTEVVVVV_cfT(M,I,A,B,D) (void *)A /* i.e. Unfortunately, can't */ #define BYTEVVVVVV_cfT(M,I,A,B,D) (void *)A /* check that the type */ #define BYTEVVVVVVV_cfT(M,I,A,B,D) (void *)A /* matches the prototype. */ #define DOUBLEVV_cfT(M,I,A,B,D) (void *)A #define DOUBLEVVV_cfT(M,I,A,B,D) (void *)A #define DOUBLEVVVV_cfT(M,I,A,B,D) (void *)A #define DOUBLEVVVVV_cfT(M,I,A,B,D) (void *)A #define DOUBLEVVVVVV_cfT(M,I,A,B,D) (void *)A #define DOUBLEVVVVVVV_cfT(M,I,A,B,D) (void *)A #define FLOATVV_cfT(M,I,A,B,D) (void *)A #define FLOATVVV_cfT(M,I,A,B,D) (void *)A #define FLOATVVVV_cfT(M,I,A,B,D) (void *)A #define FLOATVVVVV_cfT(M,I,A,B,D) (void *)A #define FLOATVVVVVV_cfT(M,I,A,B,D) (void *)A #define FLOATVVVVVVV_cfT(M,I,A,B,D) (void *)A #define INTVV_cfT(M,I,A,B,D) (void *)A #define INTVVV_cfT(M,I,A,B,D) (void *)A #define INTVVVV_cfT(M,I,A,B,D) (void *)A #define INTVVVVV_cfT(M,I,A,B,D) (void *)A #define INTVVVVVV_cfT(M,I,A,B,D) (void *)A #define INTVVVVVVV_cfT(M,I,A,B,D) (void *)A #define LOGICALVV_cfT(M,I,A,B,D) (void *)A #define LOGICALVVV_cfT(M,I,A,B,D) (void *)A #define LOGICALVVVV_cfT(M,I,A,B,D) (void *)A #define LOGICALVVVVV_cfT(M,I,A,B,D) (void *)A #define LOGICALVVVVVV_cfT(M,I,A,B,D) (void *)A #define LOGICALVVVVVVV_cfT(M,I,A,B,D) (void *)A #define LONGVV_cfT(M,I,A,B,D) (void *)A #define LONGVVV_cfT(M,I,A,B,D) (void *)A #define LONGVVVV_cfT(M,I,A,B,D) (void *)A #define LONGVVVVV_cfT(M,I,A,B,D) (void *)A #define LONGVVVVVV_cfT(M,I,A,B,D) (void *)A #define LONGVVVVVVV_cfT(M,I,A,B,D) (void *)A #define LONGLONGVV_cfT(M,I,A,B,D) (void *)A /* added by MR December 2005 */ #define LONGLONGVVV_cfT(M,I,A,B,D) (void *)A /* added by MR December 2005 */ #define LONGLONGVVVV_cfT(M,I,A,B,D) (void *)A /* added by MR December 2005 */ #define LONGLONGVVVVV_cfT(M,I,A,B,D) (void *)A /* added by MR December 2005 */ #define LONGLONGVVVVVV_cfT(M,I,A,B,D) (void *)A /* added by MR December 2005 */ #define LONGLONGVVVVVVV_cfT(M,I,A,B,D) (void *)A /* added by MR December 2005 */ #define SHORTVV_cfT(M,I,A,B,D) (void *)A #define SHORTVVV_cfT(M,I,A,B,D) (void *)A #define SHORTVVVV_cfT(M,I,A,B,D) (void *)A #define SHORTVVVVV_cfT(M,I,A,B,D) (void *)A #define SHORTVVVVVV_cfT(M,I,A,B,D) (void *)A #define SHORTVVVVVVV_cfT(M,I,A,B,D) (void *)A #define PBYTE_cfT(M,I,A,B,D) A #define PDOUBLE_cfT(M,I,A,B,D) A #define PFLOAT_cfT(M,I,A,B,D) VOIDP A #define PINT_cfT(M,I,A,B,D) A #define PLOGICAL_cfT(M,I,A,B,D) ((*A=F2CLOGICAL(*A)),A) #define PLONG_cfT(M,I,A,B,D) A #define PLONGLONG_cfT(M,I,A,B,D) A /* added by MR December 2005 */ #define PSHORT_cfT(M,I,A,B,D) A #define PVOID_cfT(M,I,A,B,D) A #if defined(apolloFortran) || defined(hpuxFortran800) || defined(AbsoftUNIXFortran) #define ROUTINE_cfT(M,I,A,B,D) _(ROUTINE_,I) (*A) #else #define ROUTINE_cfT(M,I,A,B,D) _(ROUTINE_,I) A #endif /* A == pointer to the characters D == length of the string, or of an element in an array of strings E == number of elements in an array of strings */ #define TTSTR( A,B,D) \ ((B=_cf_malloc(D+1))[D]='\0', memcpy(B,A,D), kill_trailing(B,' ')) #define TTTTSTR( A,B,D) (!(D<4||A[0]||A[1]||A[2]||A[3]))?NULL: \ memchr(A,'\0',D) ?A : TTSTR(A,B,D) #define TTTTSTRV( A,B,D,E) (_(B,N)=E,B=_cf_malloc(_(B,N)*(D+1)), (void *) \ vkill_trailing(f2cstrv(A,B,D+1, _(B,N)*(D+1)), D+1,_(B,N)*(D+1),' ')) #ifdef vmsFortran #define STRING_cfT(M,I,A,B,D) TTTTSTR( A->dsc$a_pointer,B,A->dsc$w_length) #define STRINGV_cfT(M,I,A,B,D) TTTTSTRV(A->dsc$a_pointer, B, \ A->dsc$w_length , A->dsc$l_m[0]) #define PSTRING_cfT(M,I,A,B,D) TTSTR( A->dsc$a_pointer,B,A->dsc$w_length) #define PPSTRING_cfT(M,I,A,B,D) A->dsc$a_pointer #else #ifdef CRAYFortran #define STRING_cfT(M,I,A,B,D) TTTTSTR( _fcdtocp(A),B,_fcdlen(A)) #define STRINGV_cfT(M,I,A,B,D) TTTTSTRV(_fcdtocp(A),B,_fcdlen(A), \ num_elem(_fcdtocp(A),_fcdlen(A),_3(M,_STRV_A,I))) #define PSTRING_cfT(M,I,A,B,D) TTSTR( _fcdtocp(A),B,_fcdlen(A)) #define PPSTRING_cfT(M,I,A,B,D) _fcdtocp(A) #else #define STRING_cfT(M,I,A,B,D) TTTTSTR( A,B,D) #define STRINGV_cfT(M,I,A,B,D) TTTTSTRV(A,B,D, num_elem(A,D,_3(M,_STRV_A,I))) #define PSTRING_cfT(M,I,A,B,D) TTSTR( A,B,D) #define PPSTRING_cfT(M,I,A,B,D) A #endif #endif #define PNSTRING_cfT(M,I,A,B,D) STRING_cfT(M,I,A,B,D) #define PSTRINGV_cfT(M,I,A,B,D) STRINGV_cfT(M,I,A,B,D) #define CF_0_cfT(M,I,A,B,D) #define RCF(TN,I) _(TN,_cfSTR)(3,R,_(A,I),_(B,I),_(C,I),0,0) #define DEFAULT_cfR(A,B,D) #define LOGICAL_cfR(A,B,D) #define PLOGICAL_cfR(A,B,D) *A=C2FLOGICAL(*A); #define STRING_cfR(A,B,D) if (B) _cf_free(B); #define STRINGV_cfR(A,B,D) _cf_free(B); /* A and D as defined above for TSTRING(V) */ #define RRRRPSTR( A,B,D) if (B) memcpy(A,B, _cfMIN(strlen(B),D)), \ (D>strlen(B)?memset(A+strlen(B),' ', D-strlen(B)):0), _cf_free(B); #define RRRRPSTRV(A,B,D) c2fstrv(B,A,D+1,(D+1)*_(B,N)), _cf_free(B); #ifdef vmsFortran #define PSTRING_cfR(A,B,D) RRRRPSTR( A->dsc$a_pointer,B,A->dsc$w_length) #define PSTRINGV_cfR(A,B,D) RRRRPSTRV(A->dsc$a_pointer,B,A->dsc$w_length) #else #ifdef CRAYFortran #define PSTRING_cfR(A,B,D) RRRRPSTR( _fcdtocp(A),B,_fcdlen(A)) #define PSTRINGV_cfR(A,B,D) RRRRPSTRV(_fcdtocp(A),B,_fcdlen(A)) #else #define PSTRING_cfR(A,B,D) RRRRPSTR( A,B,D) #define PSTRINGV_cfR(A,B,D) RRRRPSTRV(A,B,D) #endif #endif #define PNSTRING_cfR(A,B,D) PSTRING_cfR(A,B,D) #define PPSTRING_cfR(A,B,D) #define BYTE_cfFZ(UN,LN) INTEGER_BYTE FCALLSC_QUALIFIER fcallsc(UN,LN)( #define DOUBLE_cfFZ(UN,LN) DOUBLE_PRECISION FCALLSC_QUALIFIER fcallsc(UN,LN)( #define INT_cfFZ(UN,LN) int FCALLSC_QUALIFIER fcallsc(UN,LN)( #define LOGICAL_cfFZ(UN,LN) int FCALLSC_QUALIFIER fcallsc(UN,LN)( #define LONG_cfFZ(UN,LN) long FCALLSC_QUALIFIER fcallsc(UN,LN)( #define LONGLONG_cfFZ(UN,LN) LONGLONG FCALLSC_QUALIFIER fcallsc(UN,LN)( /* added by MR December 2005 */ #define SHORT_cfFZ(UN,LN) short FCALLSC_QUALIFIER fcallsc(UN,LN)( #define VOID_cfFZ(UN,LN) void FCALLSC_QUALIFIER fcallsc(UN,LN)( #ifndef __CF__KnR /* The void is req'd by the Apollo, to make this an ANSI function declaration. The Apollo promotes K&R float functions to double. */ #if defined (f2cFortran) && ! defined (gFortran) /* f2c/g77 return double from FORTRAN REAL functions. (KMCCARTY, 2005/12/09) */ #define FLOAT_cfFZ(UN,LN) DOUBLE_PRECISION FCALLSC_QUALIFIER fcallsc(UN,LN)(void #else #define FLOAT_cfFZ(UN,LN) FORTRAN_REAL FCALLSC_QUALIFIER fcallsc(UN,LN)(void #endif #ifdef vmsFortran #define STRING_cfFZ(UN,LN) void FCALLSC_QUALIFIER fcallsc(UN,LN)(fstring *AS #else #ifdef CRAYFortran #define STRING_cfFZ(UN,LN) void FCALLSC_QUALIFIER fcallsc(UN,LN)(_fcd AS #else #if defined(AbsoftUNIXFortran) || defined(AbsoftProFortran) #define STRING_cfFZ(UN,LN) void FCALLSC_QUALIFIER fcallsc(UN,LN)(char *AS #else #define STRING_cfFZ(UN,LN) void FCALLSC_QUALIFIER fcallsc(UN,LN)(char *AS, unsigned D0 #endif #endif #endif #else #if ! (defined(FLOATFUNCTIONTYPE)&&defined(ASSIGNFLOAT)&&defined(RETURNFLOAT)) #if defined (f2cFortran) && ! defined (gFortran) /* f2c/g77 return double from FORTRAN REAL functions. (KMCCARTY, 2005/12/09) */ #define FLOAT_cfFZ(UN,LN) DOUBLE_PRECISION FCALLSC_QUALIFIER fcallsc(UN,LN)( #else #define FLOAT_cfFZ(UN,LN) FORTRAN_REAL FCALLSC_QUALIFIER fcallsc(UN,LN)( #endif #else #define FLOAT_cfFZ(UN,LN) FLOATFUNCTIONTYPE FCALLSC_QUALIFIER fcallsc(UN,LN)( #endif #if defined(vmsFortran) || defined(CRAYFortran) || defined(AbsoftUNIXFortran) #define STRING_cfFZ(UN,LN) void FCALLSC_QUALIFIER fcallsc(UN,LN)(AS #else #define STRING_cfFZ(UN,LN) void FCALLSC_QUALIFIER fcallsc(UN,LN)(AS, D0 #endif #endif #define BYTE_cfF(UN,LN) BYTE_cfFZ(UN,LN) #define DOUBLE_cfF(UN,LN) DOUBLE_cfFZ(UN,LN) #ifndef __CF_KnR #if defined (f2cFortran) && ! defined (gFortran) /* f2c/g77 return double from FORTRAN REAL functions. (KMCCARTY, 2005/12/09) */ #define FLOAT_cfF(UN,LN) DOUBLE_PRECISION FCALLSC_QUALIFIER fcallsc(UN,LN)( #else #define FLOAT_cfF(UN,LN) FORTRAN_REAL FCALLSC_QUALIFIER fcallsc(UN,LN)( #endif #else #define FLOAT_cfF(UN,LN) FLOAT_cfFZ(UN,LN) #endif #define INT_cfF(UN,LN) INT_cfFZ(UN,LN) #define LOGICAL_cfF(UN,LN) LOGICAL_cfFZ(UN,LN) #define LONG_cfF(UN,LN) LONG_cfFZ(UN,LN) #define LONGLONG_cfF(UN,LN) LONGLONG_cfFZ(UN,LN) /* added by MR December 2005 */ #define SHORT_cfF(UN,LN) SHORT_cfFZ(UN,LN) #define VOID_cfF(UN,LN) VOID_cfFZ(UN,LN) #define STRING_cfF(UN,LN) STRING_cfFZ(UN,LN), #define INT_cfFF #define VOID_cfFF #ifdef vmsFortran #define STRING_cfFF fstring *AS; #else #ifdef CRAYFortran #define STRING_cfFF _fcd AS; #else #define STRING_cfFF char *AS; unsigned D0; #endif #endif #define INT_cfL A0= #define STRING_cfL A0= #define VOID_cfL #define INT_cfK #define VOID_cfK /* KSTRING copies the string into the position provided by the caller. */ #ifdef vmsFortran #define STRING_cfK \ memcpy(AS->dsc$a_pointer,A0,_cfMIN(AS->dsc$w_length,(A0==NULL?0:strlen(A0))));\ AS->dsc$w_length>(A0==NULL?0:strlen(A0))? \ memset(AS->dsc$a_pointer+(A0==NULL?0:strlen(A0)),' ', \ AS->dsc$w_length-(A0==NULL?0:strlen(A0))):0; #else #ifdef CRAYFortran #define STRING_cfK \ memcpy(_fcdtocp(AS),A0, _cfMIN(_fcdlen(AS),(A0==NULL?0:strlen(A0))) ); \ _fcdlen(AS)>(A0==NULL?0:strlen(A0))? \ memset(_fcdtocp(AS)+(A0==NULL?0:strlen(A0)),' ', \ _fcdlen(AS)-(A0==NULL?0:strlen(A0))):0; #else #define STRING_cfK memcpy(AS,A0, _cfMIN(D0,(A0==NULL?0:strlen(A0))) ); \ D0>(A0==NULL?0:strlen(A0))?memset(AS+(A0==NULL?0:strlen(A0)), \ ' ', D0-(A0==NULL?0:strlen(A0))):0; #endif #endif /* Note that K.. and I.. can't be combined since K.. has to access data before R.., in order for functions returning strings which are also passed in as arguments to work correctly. Note that R.. frees and hence may corrupt the string. */ #define BYTE_cfI return A0; #define DOUBLE_cfI return A0; #if ! (defined(FLOATFUNCTIONTYPE)&&defined(ASSIGNFLOAT)&&defined(RETURNFLOAT)) #define FLOAT_cfI return A0; #else #define FLOAT_cfI RETURNFLOAT(A0); #endif #define INT_cfI return A0; #ifdef hpuxFortran800 /* Incredibly, functions must return true as 1, elsewhere .true.==0x01000000. */ #define LOGICAL_cfI return ((A0)?1:0); #else #define LOGICAL_cfI return C2FLOGICAL(A0); #endif #define LONG_cfI return A0; #define LONGLONG_cfI return A0; /* added by MR December 2005 */ #define SHORT_cfI return A0; #define STRING_cfI return ; #define VOID_cfI return ; #ifdef OLD_VAXC /* Allow %CC-I-PARAMNOTUSED. */ #pragma standard #endif #define FCALLSCSUB0( CN,UN,LN) FCALLSCFUN0(VOID,CN,UN,LN) #define FCALLSCSUB1( CN,UN,LN,T1) FCALLSCFUN1(VOID,CN,UN,LN,T1) #define FCALLSCSUB2( CN,UN,LN,T1,T2) FCALLSCFUN2(VOID,CN,UN,LN,T1,T2) #define FCALLSCSUB3( CN,UN,LN,T1,T2,T3) FCALLSCFUN3(VOID,CN,UN,LN,T1,T2,T3) #define FCALLSCSUB4( CN,UN,LN,T1,T2,T3,T4) \ FCALLSCFUN4(VOID,CN,UN,LN,T1,T2,T3,T4) #define FCALLSCSUB5( CN,UN,LN,T1,T2,T3,T4,T5) \ FCALLSCFUN5(VOID,CN,UN,LN,T1,T2,T3,T4,T5) #define FCALLSCSUB6( CN,UN,LN,T1,T2,T3,T4,T5,T6) \ FCALLSCFUN6(VOID,CN,UN,LN,T1,T2,T3,T4,T5,T6) #define FCALLSCSUB7( CN,UN,LN,T1,T2,T3,T4,T5,T6,T7) \ FCALLSCFUN7(VOID,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7) #define FCALLSCSUB8( CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8) \ FCALLSCFUN8(VOID,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8) #define FCALLSCSUB9( CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9) \ FCALLSCFUN9(VOID,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9) #define FCALLSCSUB10(CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA) \ FCALLSCFUN10(VOID,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA) #define FCALLSCSUB11(CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB) \ FCALLSCFUN11(VOID,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB) #define FCALLSCSUB12(CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC) \ FCALLSCFUN12(VOID,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC) #define FCALLSCSUB13(CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD) \ FCALLSCFUN13(VOID,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD) #define FCALLSCSUB14(CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) \ FCALLSCFUN14(VOID,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) #define FCALLSCSUB15(CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF) \ FCALLSCFUN15(VOID,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF) #define FCALLSCSUB16(CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG) \ FCALLSCFUN16(VOID,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG) #define FCALLSCSUB17(CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH) \ FCALLSCFUN17(VOID,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH) #define FCALLSCSUB18(CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI) \ FCALLSCFUN18(VOID,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI) #define FCALLSCSUB19(CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ) \ FCALLSCFUN19(VOID,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ) #define FCALLSCSUB20(CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK) \ FCALLSCFUN20(VOID,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK) #define FCALLSCSUB21(CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL) \ FCALLSCFUN21(VOID,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL) #define FCALLSCSUB22(CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM) \ FCALLSCFUN22(VOID,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM) #define FCALLSCSUB23(CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN) \ FCALLSCFUN23(VOID,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN) #define FCALLSCSUB24(CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO) \ FCALLSCFUN24(VOID,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO) #define FCALLSCSUB25(CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP) \ FCALLSCFUN25(VOID,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP) #define FCALLSCSUB26(CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ) \ FCALLSCFUN26(VOID,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ) #define FCALLSCSUB27(CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR) \ FCALLSCFUN27(VOID,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR) #define FCALLSCFUN1( T0,CN,UN,LN,T1) \ FCALLSCFUN5 (T0,CN,UN,LN,T1,CF_0,CF_0,CF_0,CF_0) #define FCALLSCFUN2( T0,CN,UN,LN,T1,T2) \ FCALLSCFUN5 (T0,CN,UN,LN,T1,T2,CF_0,CF_0,CF_0) #define FCALLSCFUN3( T0,CN,UN,LN,T1,T2,T3) \ FCALLSCFUN5 (T0,CN,UN,LN,T1,T2,T3,CF_0,CF_0) #define FCALLSCFUN4( T0,CN,UN,LN,T1,T2,T3,T4) \ FCALLSCFUN5 (T0,CN,UN,LN,T1,T2,T3,T4,CF_0) #define FCALLSCFUN5( T0,CN,UN,LN,T1,T2,T3,T4,T5) \ FCALLSCFUN10(T0,CN,UN,LN,T1,T2,T3,T4,T5,CF_0,CF_0,CF_0,CF_0,CF_0) #define FCALLSCFUN6( T0,CN,UN,LN,T1,T2,T3,T4,T5,T6) \ FCALLSCFUN10(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,CF_0,CF_0,CF_0,CF_0) #define FCALLSCFUN7( T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7) \ FCALLSCFUN10(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,CF_0,CF_0,CF_0) #define FCALLSCFUN8( T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8) \ FCALLSCFUN10(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,CF_0,CF_0) #define FCALLSCFUN9( T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9) \ FCALLSCFUN10(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,CF_0) #define FCALLSCFUN10(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA) \ FCALLSCFUN14(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,CF_0,CF_0,CF_0,CF_0) #define FCALLSCFUN11(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB) \ FCALLSCFUN14(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,CF_0,CF_0,CF_0) #define FCALLSCFUN12(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC) \ FCALLSCFUN14(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,CF_0,CF_0) #define FCALLSCFUN13(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD) \ FCALLSCFUN14(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,CF_0) #define FCALLSCFUN15(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF) \ FCALLSCFUN20(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,CF_0,CF_0,CF_0,CF_0,CF_0) #define FCALLSCFUN16(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG) \ FCALLSCFUN20(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,CF_0,CF_0,CF_0,CF_0) #define FCALLSCFUN17(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH) \ FCALLSCFUN20(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,CF_0,CF_0,CF_0) #define FCALLSCFUN18(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI) \ FCALLSCFUN20(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,CF_0,CF_0) #define FCALLSCFUN19(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ) \ FCALLSCFUN20(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,CF_0) #define FCALLSCFUN20(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK) \ FCALLSCFUN27(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0) #define FCALLSCFUN21(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL) \ FCALLSCFUN27(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,CF_0,CF_0,CF_0,CF_0,CF_0,CF_0) #define FCALLSCFUN22(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM) \ FCALLSCFUN27(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,CF_0,CF_0,CF_0,CF_0,CF_0) #define FCALLSCFUN23(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN) \ FCALLSCFUN27(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,CF_0,CF_0,CF_0,CF_0) #define FCALLSCFUN24(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO) \ FCALLSCFUN27(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,CF_0,CF_0,CF_0) #define FCALLSCFUN25(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP) \ FCALLSCFUN27(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,CF_0,CF_0) #define FCALLSCFUN26(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ) \ FCALLSCFUN27(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,CF_0) #ifndef __CF__KnR #define FCALLSCFUN0(T0,CN,UN,LN) CFextern _(T0,_cfFZ)(UN,LN) ABSOFT_cf2(T0)) \ {_Icf(2,UU,T0,A0,0); _Icf(0,L,T0,0,0) CN(); _Icf(0,K,T0,0,0) _(T0,_cfI)} #define FCALLSCFUN14(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) \ CFextern _(T0,_cfF)(UN,LN) \ CFARGT14(NCF,DCF,ABSOFT_cf2(T0),T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) ) \ { CFARGT14S(QCF,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) \ _Icf(2,UU,T0,A0,0); _Icf(0,L,T0,0,0) CN( TCF(LN,T1,1,0) TCF(LN,T2,2,1) \ TCF(LN,T3,3,1) TCF(LN,T4,4,1) TCF(LN,T5,5,1) TCF(LN,T6,6,1) TCF(LN,T7,7,1) \ TCF(LN,T8,8,1) TCF(LN,T9,9,1) TCF(LN,TA,10,1) TCF(LN,TB,11,1) TCF(LN,TC,12,1) \ TCF(LN,TD,13,1) TCF(LN,TE,14,1) ); _Icf(0,K,T0,0,0) \ CFARGT14S(RCF,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) _(T0,_cfI) } #define FCALLSCFUN27(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR) \ CFextern _(T0,_cfF)(UN,LN) \ CFARGT27(NCF,DCF,ABSOFT_cf2(T0),T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR) ) \ { CFARGT27S(QCF,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR) \ _Icf(2,UU,T0,A0,0); _Icf(0,L,T0,0,0) CN( TCF(LN,T1,1,0) TCF(LN,T2,2,1) \ TCF(LN,T3,3,1) TCF(LN,T4,4,1) TCF(LN,T5,5,1) TCF(LN,T6,6,1) TCF(LN,T7,7,1) \ TCF(LN,T8,8,1) TCF(LN,T9,9,1) TCF(LN,TA,10,1) TCF(LN,TB,11,1) TCF(LN,TC,12,1) \ TCF(LN,TD,13,1) TCF(LN,TE,14,1) TCF(LN,TF,15,1) TCF(LN,TG,16,1) TCF(LN,TH,17,1) \ TCF(LN,TI,18,1) TCF(LN,TJ,19,1) TCF(LN,TK,20,1) TCF(LN,TL,21,1) TCF(LN,TM,22,1) \ TCF(LN,TN,23,1) TCF(LN,TO,24,1) TCF(LN,TP,25,1) TCF(LN,TQ,26,1) TCF(LN,TR,27,1) ); _Icf(0,K,T0,0,0) \ CFARGT27S(RCF,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR) _(T0,_cfI) } #else #define FCALLSCFUN0(T0,CN,UN,LN) CFextern _(T0,_cfFZ)(UN,LN) ABSOFT_cf3(T0)) _Icf(0,FF,T0,0,0)\ {_Icf(2,UU,T0,A0,0); _Icf(0,L,T0,0,0) CN(); _Icf(0,K,T0,0,0) _(T0,_cfI)} #define FCALLSCFUN14(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) \ CFextern _(T0,_cfF)(UN,LN) \ CFARGT14(NNCF,DDCF,ABSOFT_cf3(T0),T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE)) _Icf(0,FF,T0,0,0) \ CFARGT14FS(NNNCF,DDDCF,_Z,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE); \ { CFARGT14S(QCF,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) \ _Icf(2,UU,T0,A0,0); _Icf(0,L,T0,0,0) CN( TCF(LN,T1,1,0) TCF(LN,T2,2,1) \ TCF(LN,T3,3,1) TCF(LN,T4,4,1) TCF(LN,T5,5,1) TCF(LN,T6,6,1) TCF(LN,T7,7,1) \ TCF(LN,T8,8,1) TCF(LN,T9,9,1) TCF(LN,TA,10,1) TCF(LN,TB,11,1) TCF(LN,TC,12,1) \ TCF(LN,TD,13,1) TCF(LN,TE,14,1) ); _Icf(0,K,T0,0,0) \ CFARGT14S(RCF,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE) _(T0,_cfI)} #define FCALLSCFUN27(T0,CN,UN,LN,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR) \ CFextern _(T0,_cfF)(UN,LN) \ CFARGT27(NNCF,DDCF,ABSOFT_cf3(T0),T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR)) _Icf(0,FF,T0,0,0) \ CFARGT27FS(NNNCF,DDDCF,_Z,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR); \ { CFARGT27S(QCF,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR) \ _Icf(2,UU,T0,A0,0); _Icf(0,L,T0,0,0) CN( TCF(LN,T1,1,0) TCF(LN,T2,2,1) \ TCF(LN,T3,3,1) TCF(LN,T4,4,1) TCF(LN,T5,5,1) TCF(LN,T6,6,1) TCF(LN,T7,7,1) \ TCF(LN,T8,8,1) TCF(LN,T9,9,1) TCF(LN,TA,10,1) TCF(LN,TB,11,1) TCF(LN,TC,12,1) \ TCF(LN,TD,13,1) TCF(LN,TE,14,1) TCF(LN,TF,15,1) TCF(LN,TG,16,1) TCF(LN,TH,17,1) \ TCF(LN,TI,18,1) TCF(LN,TJ,19,1) TCF(LN,TK,20,1) TCF(LN,TL,21,1) TCF(LN,TM,22,1) \ TCF(LN,TN,23,1) TCF(LN,TO,24,1) TCF(LN,TP,25,1) TCF(LN,TQ,26,1) TCF(LN,TR,27,1) ); _Icf(0,K,T0,0,0) \ CFARGT27S(RCF,T1,T2,T3,T4,T5,T6,T7,T8,T9,TA,TB,TC,TD,TE,TF,TG,TH,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR) _(T0,_cfI)} #endif #endif /* __CFORTRAN_LOADED */ healpy-1.8.1/cfitsio/getcolk.c0000654000175000017530000021616312272000775016662 0ustar zoncaplanck00000000000000/* This file, getcolk.c, contains routines that read data elements from */ /* a FITS image or table, with 'int' data type. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffgpvk( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ int nulval, /* I - value for undefined pixels */ int *array, /* O - array of values that are returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Undefined elements will be set equal to NULVAL, unless NULVAL=0 in which case no checking for undefined values will be performed. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { long row; char cdummy; int nullcheck = 1; int nullvalue; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ nullvalue = nulval; /* set local variable */ fits_read_compressed_pixels(fptr, TINT, firstelem, nelem, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgclk(fptr, 2, row, firstelem, nelem, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgpfk( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ int *array, /* O - array of values that are returned */ char *nularray, /* O - array of null pixel flags */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any undefined pixels in the returned array will be set = 0 and the corresponding nularray value will be set = 1. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { long row; int nullcheck = 2; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_read_compressed_pixels(fptr, TINT, firstelem, nelem, nullcheck, NULL, array, nularray, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgclk(fptr, 2, row, firstelem, nelem, 1, 2, 0L, array, nularray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffg2dk(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ int nulval, /* set undefined pixels equal to this */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ int *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an entire 2-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any null values in the array will be set equal to the value of nulval, unless nulval = 0 in which case no null checking will be performed. */ { /* call the 3D reading routine, with the 3rd dimension = 1 */ ffg3dk(fptr, group, nulval, ncols, naxis2, naxis1, naxis2, 1, array, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffg3dk(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ int nulval, /* set undefined pixels equal to this */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG nrows, /* I - number of rows in each plane of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ LONGLONG naxis3, /* I - FITS image NAXIS3 value */ int *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an entire 3-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any null values in the array will be set equal to the value of nulval, unless nulval = 0 in which case no null checking will be performed. */ { long tablerow, ii, jj; char cdummy; int nullcheck = 1; long inc[] = {1,1,1}; LONGLONG fpixel[] = {1,1,1}, nfits, narray; LONGLONG lpixel[3]; int nullvalue; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ lpixel[0] = ncols; lpixel[1] = nrows; lpixel[2] = naxis3; nullvalue = nulval; /* set local variable */ fits_read_compressed_img(fptr, TINT, fpixel, lpixel, inc, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ tablerow=maxvalue(1,group); if (ncols == naxis1 && nrows == naxis2) /* arrays have same size? */ { /* all the image pixels are contiguous, so read all at once */ ffgclk(fptr, 2, tablerow, 1, naxis1 * naxis2 * naxis3, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } if (ncols < naxis1 || nrows < naxis2) return(*status = BAD_DIMEN); nfits = 1; /* next pixel in FITS image to read */ narray = 0; /* next pixel in output array to be filled */ /* loop over naxis3 planes in the data cube */ for (jj = 0; jj < naxis3; jj++) { /* loop over the naxis2 rows in the FITS image, */ /* reading naxis1 pixels to each row */ for (ii = 0; ii < naxis2; ii++) { if (ffgclk(fptr, 2, tablerow, nfits, naxis1, 1, 1, nulval, &array[narray], &cdummy, anynul, status) > 0) return(*status); nfits += naxis1; narray += ncols; } narray += (nrows - naxis2) * ncols; } return(*status); } /*--------------------------------------------------------------------------*/ int ffgsvk(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of the column to read (1 = 1st) */ int naxis, /* I - number of dimensions in the FITS array */ long *naxes, /* I - size of each dimension */ long *blc, /* I - 'bottom left corner' of the subsection */ long *trc, /* I - 'top right corner' of the subsection */ long *inc, /* I - increment to be applied in each dimension */ int nulval, /* I - value to set undefined pixels */ int *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read a subsection of data values from an image or a table column. This routine is set up to handle a maximum of nine dimensions. */ { long ii,i0, i1,i2,i3,i4,i5,i6,i7,i8,row,rstr,rstp,rinc; long str[9],stp[9],incr[9],dir[9]; long nelem, nultyp, ninc, numcol; LONGLONG felem, dsize[10], blcll[9], trcll[9]; int hdutype, anyf; char ldummy, msg[FLEN_ERRMSG]; int nullcheck = 1; int nullvalue; if (naxis < 1 || naxis > 9) { sprintf(msg, "NAXIS = %d in call to ffgsvj is out of range", naxis); ffpmsg(msg); return(*status = BAD_DIMEN); } if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ for (ii=0; ii < naxis; ii++) { blcll[ii] = blc[ii]; trcll[ii] = trc[ii]; } nullvalue = nulval; /* set local variable */ fits_read_compressed_img(fptr, TINT, blcll, trcll, inc, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* if this is a primary array, then the input COLNUM parameter should be interpreted as the row number, and we will alway read the image data from column 2 (any group parameters are in column 1). */ if (ffghdt(fptr, &hdutype, status) > 0) return(*status); if (hdutype == IMAGE_HDU) { /* this is a primary array, or image extension */ if (colnum == 0) { rstr = 1; rstp = 1; } else { rstr = colnum; rstp = colnum; } rinc = 1; numcol = 2; } else { /* this is a table, so the row info is in the (naxis+1) elements */ rstr = blc[naxis]; rstp = trc[naxis]; rinc = inc[naxis]; numcol = colnum; } nultyp = 1; if (anynul) *anynul = FALSE; i0 = 0; for (ii = 0; ii < 9; ii++) { str[ii] = 1; stp[ii] = 1; incr[ii] = 1; dsize[ii] = 1; dir[ii] = 1; } for (ii = 0; ii < naxis; ii++) { if (trc[ii] < blc[ii]) { if (hdutype == IMAGE_HDU) { dir[ii] = -1; } else { sprintf(msg, "ffgsvk: illegal range specified for axis %ld", ii + 1); ffpmsg(msg); return(*status = BAD_PIX_NUM); } } str[ii] = blc[ii]; stp[ii] = trc[ii]; incr[ii] = inc[ii]; dsize[ii + 1] = dsize[ii] * naxes[ii]; dsize[ii] = dsize[ii] * dir[ii]; } dsize[naxis] = dsize[naxis] * dir[naxis]; if (naxis == 1 && naxes[0] == 1) { /* This is not a vector column, so read all the rows at once */ nelem = (rstp - rstr) / rinc + 1; ninc = rinc; rstp = rstr; } else { /* have to read each row individually, in all dimensions */ nelem = (stp[0]*dir[0] - str[0]*dir[0]) / inc[0] + 1; ninc = incr[0] * dir[0]; } for (row = rstr; row <= rstp; row += rinc) { for (i8 = str[8]*dir[8]; i8 <= stp[8]*dir[8]; i8 += incr[8]) { for (i7 = str[7]*dir[7]; i7 <= stp[7]*dir[7]; i7 += incr[7]) { for (i6 = str[6]*dir[6]; i6 <= stp[6]*dir[6]; i6 += incr[6]) { for (i5 = str[5]*dir[5]; i5 <= stp[5]*dir[5]; i5 += incr[5]) { for (i4 = str[4]*dir[4]; i4 <= stp[4]*dir[4]; i4 += incr[4]) { for (i3 = str[3]*dir[3]; i3 <= stp[3]*dir[3]; i3 += incr[3]) { for (i2 = str[2]*dir[2]; i2 <= stp[2]*dir[2]; i2 += incr[2]) { for (i1 = str[1]*dir[1]; i1 <= stp[1]*dir[1]; i1 += incr[1]) { felem=str[0] + (i1 - dir[1]) * dsize[1] + (i2 - dir[2]) * dsize[2] + (i3 - dir[3]) * dsize[3] + (i4 - dir[4]) * dsize[4] + (i5 - dir[5]) * dsize[5] + (i6 - dir[6]) * dsize[6] + (i7 - dir[7]) * dsize[7] + (i8 - dir[8]) * dsize[8]; if ( ffgclk(fptr, numcol, row, felem, nelem, ninc, nultyp, nulval, &array[i0], &ldummy, &anyf, status) > 0) return(*status); if (anyf && anynul) *anynul = TRUE; i0 += nelem; } } } } } } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffgsfk(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of the column to read (1 = 1st) */ int naxis, /* I - number of dimensions in the FITS array */ long *naxes, /* I - size of each dimension */ long *blc, /* I - 'bottom left corner' of the subsection */ long *trc, /* I - 'top right corner' of the subsection */ long *inc, /* I - increment to be applied in each dimension */ int *array, /* O - array to be filled and returned */ char *flagval, /* O - set to 1 if corresponding value is null */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read a subsection of data values from an image or a table column. This routine is set up to handle a maximum of nine dimensions. */ { long ii,i0, i1,i2,i3,i4,i5,i6,i7,i8,row,rstr,rstp,rinc; long str[9],stp[9],incr[9],dsize[10]; LONGLONG blcll[9], trcll[9]; long felem, nelem, nultyp, ninc, numcol; long nulval = 0; int hdutype, anyf; char msg[FLEN_ERRMSG]; int nullcheck = 2; if (naxis < 1 || naxis > 9) { sprintf(msg, "NAXIS = %d in call to ffgsvj is out of range", naxis); ffpmsg(msg); return(*status = BAD_DIMEN); } if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ for (ii=0; ii < naxis; ii++) { blcll[ii] = blc[ii]; trcll[ii] = trc[ii]; } fits_read_compressed_img(fptr, TINT, blcll, trcll, inc, nullcheck, NULL, array, flagval, anynul, status); return(*status); } /* if this is a primary array, then the input COLNUM parameter should be interpreted as the row number, and we will alway read the image data from column 2 (any group parameters are in column 1). */ if (ffghdt(fptr, &hdutype, status) > 0) return(*status); if (hdutype == IMAGE_HDU) { /* this is a primary array, or image extension */ if (colnum == 0) { rstr = 1; rstp = 1; } else { rstr = colnum; rstp = colnum; } rinc = 1; numcol = 2; } else { /* this is a table, so the row info is in the (naxis+1) elements */ rstr = blc[naxis]; rstp = trc[naxis]; rinc = inc[naxis]; numcol = colnum; } nultyp = 2; if (anynul) *anynul = FALSE; i0 = 0; for (ii = 0; ii < 9; ii++) { str[ii] = 1; stp[ii] = 1; incr[ii] = 1; dsize[ii] = 1; } for (ii = 0; ii < naxis; ii++) { if (trc[ii] < blc[ii]) { sprintf(msg, "ffgsvj: illegal range specified for axis %ld", ii + 1); ffpmsg(msg); return(*status = BAD_PIX_NUM); } str[ii] = blc[ii]; stp[ii] = trc[ii]; incr[ii] = inc[ii]; dsize[ii + 1] = dsize[ii] * naxes[ii]; } if (naxis == 1 && naxes[0] == 1) { /* This is not a vector column, so read all the rows at once */ nelem = (rstp - rstr) / rinc + 1; ninc = rinc; rstp = rstr; } else { /* have to read each row individually, in all dimensions */ nelem = (stp[0] - str[0]) / inc[0] + 1; ninc = incr[0]; } for (row = rstr; row <= rstp; row += rinc) { for (i8 = str[8]; i8 <= stp[8]; i8 += incr[8]) { for (i7 = str[7]; i7 <= stp[7]; i7 += incr[7]) { for (i6 = str[6]; i6 <= stp[6]; i6 += incr[6]) { for (i5 = str[5]; i5 <= stp[5]; i5 += incr[5]) { for (i4 = str[4]; i4 <= stp[4]; i4 += incr[4]) { for (i3 = str[3]; i3 <= stp[3]; i3 += incr[3]) { for (i2 = str[2]; i2 <= stp[2]; i2 += incr[2]) { for (i1 = str[1]; i1 <= stp[1]; i1 += incr[1]) { felem=str[0] + (i1 - 1) * dsize[1] + (i2 - 1) * dsize[2] + (i3 - 1) * dsize[3] + (i4 - 1) * dsize[4] + (i5 - 1) * dsize[5] + (i6 - 1) * dsize[6] + (i7 - 1) * dsize[7] + (i8 - 1) * dsize[8]; if ( ffgclk(fptr, numcol, row, felem, nelem, ninc, nultyp, nulval, &array[i0], &flagval[i0], &anyf, status) > 0) return(*status); if (anyf && anynul) *anynul = TRUE; i0 += nelem; } } } } } } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffggpk( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ long firstelem, /* I - first vector element to read (1 = 1st) */ long nelem, /* I - number of values to read */ int *array, /* O - array of values that are returned */ int *status) /* IO - error status */ /* Read an array of group parameters from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). */ { long row; int idummy; char cdummy; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgclk(fptr, 1, row, firstelem, nelem, 1, 1, 0L, array, &cdummy, &idummy, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcvk(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ int nulval, /* I - value for null pixels */ int *array, /* O - array of values that are read */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Any undefined pixels will be set equal to the value of 'nulval' unless nulval = 0 in which case no checks for undefined pixels will be made. */ { char cdummy; ffgclk(fptr, colnum, firstrow, firstelem, nelem, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcfk(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ int *array, /* O - array of values that are read */ char *nularray, /* O - array of flags: 1 if null pixel; else 0 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Nularray will be set = 1 if the corresponding array pixel is undefined, otherwise nularray will = 0. */ { int dummy = 0; ffgclk(fptr, colnum, firstrow, firstelem, nelem, 1, 2, dummy, array, nularray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgclk( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ long elemincre, /* I - pixel increment; e.g., 2 = every other */ int nultyp, /* I - null value handling code: */ /* 1: set undefined pixels = nulval */ /* 2: set nularray=1 for undefined pixels */ int nulval, /* I - value for null pixels if nultyp = 1 */ int *array, /* O - array of values that are read */ char *nularray, /* O - array of flags = 1 if nultyp = 2 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. The column number may refer to a real column in an ASCII or binary table, or it may refer be a virtual column in a 1 or more grouped FITS primary array or image extension. FITSIO treats a primary array as a binary table with 2 vector columns: the first column contains the group parameters (often with length = 0) and the second column contains the array of image pixels. Each row of the table represents a group in the case of multigroup FITS images. The output array of values will be converted from the datatype of the column and will be scaled by the FITS TSCALn and TZEROn values if necessary. */ { double scale, zero, power, dtemp; int tcode, maxelem2, hdutype, xcode, decimals; long twidth, incre; long ii, xwidth, ntodo; int convert, nulcheck, readcheck = 0; LONGLONG repeat, startpos, elemnum, readptr, tnull; LONGLONG rowlen, rownum, remain, next, rowincre, maxelem; char tform[20]; char message[81]; char snull[20]; /* the FITS null value if reading from ASCII table */ double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */ void *buffer; if (*status > 0 || nelem == 0) /* inherit input status value if > 0 */ return(*status); /* call the 'short' or 'long' version of this routine, if possible */ if (sizeof(int) == sizeof(short)) ffgcli(fptr, colnum, firstrow, firstelem, nelem, elemincre, nultyp, (short) nulval, (short *) array, nularray, anynul, status); else if (sizeof(int) == sizeof(long)) ffgclj(fptr, colnum, firstrow, firstelem, nelem, elemincre, nultyp, (long) nulval, (long *) array, nularray, anynul, status); else { /* This is a special case: sizeof(int) is not equal to sizeof(short) or sizeof(long). This occurs on Alpha OSF systems where short = 2 bytes, int = 4 bytes, and long = 8 bytes. */ buffer = cbuff; power = 1.; if (anynul) *anynul = 0; if (nultyp == 2) memset(nularray, 0, (size_t) nelem); /* initialize nullarray */ /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if (elemincre < 0) readcheck = -1; /* don't do range checking in this case */ if ( ffgcprll( fptr, colnum, firstrow, firstelem, nelem, readcheck, &scale, &zero, tform, &twidth, &tcode, &maxelem2, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0 ) return(*status); maxelem = maxelem2; incre *= elemincre; /* multiply incre to just get every nth pixel */ if (tcode == TSTRING) /* setup for ASCII tables */ { /* get the number of implied decimal places if no explicit decmal point */ ffasfm(tform, &xcode, &xwidth, &decimals, status); for(ii = 0; ii < decimals; ii++) power *= 10.; } /*------------------------------------------------------------------*/ /* Decide whether to check for null values in the input FITS file: */ /*------------------------------------------------------------------*/ nulcheck = nultyp; /* by default check for null values in the FITS file */ if (nultyp == 1 && nulval == 0) nulcheck = 0; /* calling routine does not want to check for nulls */ else if (tcode%10 == 1 && /* if reading an integer column, and */ tnull == NULL_UNDEFINED) /* if a null value is not defined, */ nulcheck = 0; /* then do not check for null values. */ else if (tcode == TSHORT && (tnull > SHRT_MAX || tnull < SHRT_MIN) ) nulcheck = 0; /* Impossible null value */ else if (tcode == TBYTE && (tnull > 255 || tnull < 0) ) nulcheck = 0; /* Impossible null value */ else if (tcode == TSTRING && snull[0] == ASCII_NULL_UNDEFINED) nulcheck = 0; /*----------------------------------------------------------------------*/ /* If FITS column and output data array have same datatype, then we do */ /* not need to use a temporary buffer to store intermediate datatype. */ /*----------------------------------------------------------------------*/ convert = 1; if (tcode == TLONG) /* Special Case: */ { /* no type convertion required, so read */ /* data directly into output buffer. */ if (nelem < (LONGLONG)INT32_MAX/4) { maxelem = nelem; } else { maxelem = INT32_MAX/4; } if (nulcheck == 0 && scale == 1. && zero == 0.) convert = 0; /* no need to scale data or find nulls */ } /*---------------------------------------------------------------------*/ /* Now read the pixels from the FITS column. If the column does not */ /* have the same datatype as the output array, then we have to read */ /* the raw values into a temporary buffer (of limited size). In */ /* the case of a vector colum read only 1 vector of values at a time */ /* then skip to the next row if more values need to be read. */ /* After reading the raw values, then call the fffXXYY routine to (1) */ /* test for undefined values, (2) convert the datatype if necessary, */ /* and (3) scale the values by the FITS TSCALn and TZEROn linear */ /* scaling parameters. */ /*---------------------------------------------------------------------*/ remain = nelem; /* remaining number of values to read */ next = 0; /* next element in array to be read */ rownum = 0; /* row number, relative to firstrow */ while (remain) { /* limit the number of pixels to read at one time to the number that will fit in the buffer or to the number of pixels that remain in the current vector, which ever is smaller. */ ntodo = (long) minvalue(remain, maxelem); if (elemincre >= 0) { ntodo = (long) minvalue(ntodo, ((repeat - elemnum - 1)/elemincre +1)); } else { ntodo = (long) minvalue(ntodo, (elemnum/(-elemincre) +1)); } readptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * (incre / elemincre)); switch (tcode) { case (TLONG): ffgi4b(fptr, readptr, ntodo, incre, (INT32BIT *) &array[next], status); if (convert) fffi4int((INT32BIT *) &array[next], ntodo, scale, zero, nulcheck, (INT32BIT) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TLONGLONG): ffgi8b(fptr, readptr, ntodo, incre, (long *) buffer, status); fffi8int( (LONGLONG *) buffer, ntodo, scale, zero, nulcheck, tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TBYTE): ffgi1b(fptr, readptr, ntodo, incre, (unsigned char *) buffer, status); fffi1int((unsigned char *) buffer, ntodo, scale, zero, nulcheck, (unsigned char) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TSHORT): ffgi2b(fptr, readptr, ntodo, incre, (short *) buffer, status); fffi2int((short *) buffer, ntodo, scale, zero, nulcheck, (short) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TFLOAT): ffgr4b(fptr, readptr, ntodo, incre, (float *) buffer, status); fffr4int((float *) buffer, ntodo, scale, zero, nulcheck, nulval, &nularray[next], anynul, &array[next], status); break; case (TDOUBLE): ffgr8b(fptr, readptr, ntodo, incre, (double *) buffer, status); fffr8int((double *) buffer, ntodo, scale, zero, nulcheck, nulval, &nularray[next], anynul, &array[next], status); break; case (TSTRING): ffmbyt(fptr, readptr, REPORT_EOF, status); if (incre == twidth) /* contiguous bytes */ ffgbyt(fptr, ntodo * twidth, buffer, status); else ffgbytoff(fptr, twidth, ntodo, incre - twidth, buffer, status); fffstrint((char *) buffer, ntodo, scale, zero, twidth, power, nulcheck, snull, nulval, &nularray[next], anynul, &array[next], status); break; default: /* error trap for invalid column format */ sprintf(message, "Cannot read numbers from column %d which has format %s", colnum, tform); ffpmsg(message); if (hdutype == ASCII_TBL) return(*status = BAD_ATABLE_FORMAT); else return(*status = BAD_BTABLE_FORMAT); } /* End of switch block */ /*-------------------------*/ /* Check for fatal error */ /*-------------------------*/ if (*status > 0) /* test for error during previous read operation */ { dtemp = (double) next; if (hdutype > 0) sprintf(message, "Error reading elements %.0f thru %.0f from column %d (ffgclk).", dtemp+1., dtemp+ntodo, colnum); else sprintf(message, "Error reading elements %.0f thru %.0f from image (ffgclk).", dtemp+1., dtemp+ntodo); ffpmsg(message); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain -= ntodo; if (remain) { next += ntodo; elemnum = elemnum + (ntodo * elemincre); if (elemnum >= repeat) /* completed a row; start on later row */ { rowincre = elemnum / repeat; rownum += rowincre; elemnum = elemnum - (rowincre * repeat); } else if (elemnum < 0) /* completed a row; start on a previous row */ { rowincre = (-elemnum - 1) / repeat + 1; rownum -= rowincre; elemnum = (rowincre * repeat) + elemnum; } } } /* End of main while Loop */ /*--------------------------------*/ /* check for numerical overflow */ /*--------------------------------*/ if (*status == OVERFLOW_ERR) { ffpmsg( "Numerical overflow during type conversion while reading FITS data."); *status = NUM_OVERFLOW; } } /* end of DEC Alpha special case */ return(*status); } /*--------------------------------------------------------------------------*/ int fffi1int(unsigned char *input,/* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ unsigned char tnull, /* I - value of FITS TNULLn keyword if any */ int nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ int *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) output[ii] = (int) input[ii]; /* copy input to output */ } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT_MAX; } else output[ii] = (int) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = (int) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT_MAX; } else output[ii] = (int) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi2int(short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ short tnull, /* I - value of FITS TNULLn keyword if any */ int nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ int *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) output[ii] = (int) input[ii]; /* copy input to output */ } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT_MAX; } else output[ii] = (int) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = (int) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT_MAX; } else output[ii] = (int) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi4int(INT32BIT *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ INT32BIT tnull, /* I - value of FITS TNULLn keyword if any */ int nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ int *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) output[ii] = (int) input[ii]; /* copy input to output */ } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT_MAX; } else output[ii] = (int) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = (int) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT_MAX; } else output[ii] = (int) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi8int(LONGLONG *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ LONGLONG tnull, /* I - value of FITS TNULLn keyword if any */ int nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ int *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < INT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT_MIN; } else if (input[ii] > INT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT_MAX; } else output[ii] = (int) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT_MAX; } else output[ii] = (int) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { if (input[ii] < INT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT_MIN; } else if (input[ii] > INT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT_MAX; } else output[ii] = (int) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT_MAX; } else output[ii] = (int) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffr4int(float *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ int nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ int *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to NaN. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; short *sptr, iret; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT_MIN; } else if (input[ii] > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT_MAX; } else output[ii] = (int) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT_MAX; } else output[ii] = (int) dvalue; } } } else /* must check for null values */ { sptr = (short *) input; #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS sptr++; /* point to MSBs */ #endif if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++, sptr += 2) { if (0 != (iret = fnan(*sptr) ) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ output[ii] = 0; } else { if (input[ii] < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT_MIN; } else if (input[ii] > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT_MAX; } else output[ii] = (int) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++, sptr += 2) { if (0 != (iret = fnan(*sptr) ) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ { if (zero < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT_MIN; } else if (zero > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT_MAX; } else output[ii] = (int) zero; } } else { dvalue = input[ii] * scale + zero; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT_MAX; } else output[ii] = (int) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffr8int(double *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ int nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ int *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to NaN. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; short *sptr, iret; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT_MIN; } else if (input[ii] > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT_MAX; } else output[ii] = (int) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT_MAX; } else output[ii] = (int) dvalue; } } } else /* must check for null values */ { sptr = (short *) input; #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS sptr += 3; /* point to MSBs */ #endif if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++, sptr += 4) { if (0 != (iret = dnan(*sptr)) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ output[ii] = 0; } else { if (input[ii] < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT_MIN; } else if (input[ii] > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT_MAX; } else output[ii] = (int) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++, sptr += 4) { if (0 != (iret = dnan(*sptr)) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ { if (zero < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT_MIN; } else if (zero > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT_MAX; } else output[ii] = (int) zero; } } else { dvalue = input[ii] * scale + zero; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT_MAX; } else output[ii] = (int) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffstrint(char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ long twidth, /* I - width of each substring of chars */ double implipower, /* I - power of 10 of implied decimal */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ char *snull, /* I - value of FITS null string, if any */ int nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ int *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to snull. If nullcheck= 0, then no special checking for nulls is performed. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { int nullen; long ii; double dvalue; char *cstring, message[81]; char *cptr, *tpos; char tempstore, chrzero = '0'; double val, power; int exponent, sign, esign, decpt; nullen = strlen(snull); cptr = input; /* pointer to start of input string */ for (ii = 0; ii < ntodo; ii++) { cstring = cptr; /* temporarily insert a null terminator at end of the string */ tpos = cptr + twidth; tempstore = *tpos; *tpos = 0; /* check if null value is defined, and if the */ /* column string is identical to the null string */ if (snull[0] != ASCII_NULL_UNDEFINED && !strncmp(snull, cptr, nullen) ) { if (nullcheck) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } cptr += twidth; } else { /* value is not the null value, so decode it */ /* remove any embedded blank characters from the string */ decpt = 0; sign = 1; val = 0.; power = 1.; exponent = 0; esign = 1; while (*cptr == ' ') /* skip leading blanks */ cptr++; if (*cptr == '-' || *cptr == '+') /* check for leading sign */ { if (*cptr == '-') sign = -1; cptr++; while (*cptr == ' ') /* skip blanks between sign and value */ cptr++; } while (*cptr >= '0' && *cptr <= '9') { val = val * 10. + *cptr - chrzero; /* accumulate the value */ cptr++; while (*cptr == ' ') /* skip embedded blanks in the value */ cptr++; } if (*cptr == '.' || *cptr == ',') /* check for decimal point */ { decpt = 1; /* set flag to show there was a decimal point */ cptr++; while (*cptr == ' ') /* skip any blanks */ cptr++; while (*cptr >= '0' && *cptr <= '9') { val = val * 10. + *cptr - chrzero; /* accumulate the value */ power = power * 10.; cptr++; while (*cptr == ' ') /* skip embedded blanks in the value */ cptr++; } } if (*cptr == 'E' || *cptr == 'D') /* check for exponent */ { cptr++; while (*cptr == ' ') /* skip blanks */ cptr++; if (*cptr == '-' || *cptr == '+') /* check for exponent sign */ { if (*cptr == '-') esign = -1; cptr++; while (*cptr == ' ') /* skip blanks between sign and exp */ cptr++; } while (*cptr >= '0' && *cptr <= '9') { exponent = exponent * 10 + *cptr - chrzero; /* accumulate exp */ cptr++; while (*cptr == ' ') /* skip embedded blanks */ cptr++; } } if (*cptr != 0) /* should end up at the null terminator */ { sprintf(message, "Cannot read number from ASCII table"); ffpmsg(message); sprintf(message, "Column field = %s.", cstring); ffpmsg(message); /* restore the char that was overwritten by the null */ *tpos = tempstore; return(*status = BAD_C2D); } if (!decpt) /* if no explicit decimal, use implied */ power = implipower; dvalue = (sign * val / power) * pow(10., (double) (esign * exponent)); dvalue = dvalue * scale + zero; /* apply the scaling */ if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT_MAX; } else output[ii] = (long) dvalue; } /* restore the char that was overwritten by the null */ *tpos = tempstore; } return(*status); } healpy-1.8.1/cfitsio/imcopy.c0000654000175000017530000002223012272000775016520 0ustar zoncaplanck00000000000000#include #include #include #include "fitsio.h" int main(int argc, char *argv[]) { fitsfile *infptr, *outfptr; /* FITS file pointers defined in fitsio.h */ int status = 0, tstatus, ii = 1, iteration = 0, single = 0, hdupos; int hdutype, bitpix, bytepix, naxis = 0, nkeys, datatype = 0, anynul; long naxes[9] = {1, 1, 1, 1, 1, 1, 1, 1, 1}; long first, totpix = 0, npix; double *array, bscale = 1.0, bzero = 0.0, nulval = 0.; char card[81]; if (argc != 3) { printf("\n"); printf("Usage: imcopy inputImage outputImage[compress]\n"); printf("\n"); printf("Copy an input image to an output image, optionally compressing\n"); printf("or uncompressing the image in the process. If the [compress]\n"); printf("qualifier is appended to the output file name then the input image\n"); printf("will be compressed using the tile-compressed format. In this format,\n"); printf("the image is divided into rectangular tiles and each tile of pixels\n"); printf("is compressed and stored in a variable-length row of a binary table.\n"); printf("If the [compress] qualifier is omitted, and the input image is\n"); printf("in tile-compressed format, then the output image will be uncompressed.\n"); printf("\n"); printf("If an extension name or number is appended to the input file name, \n"); printf("enclosed in square brackets, then only that single extension will be\n"); printf("copied to the output file. Otherwise, every extension in the input file\n"); printf("will be processed in turn and copied to the output file.\n"); printf("\n"); printf("Examples:\n"); printf("\n"); printf("1) imcopy image.fit 'cimage.fit[compress]'\n"); printf("\n"); printf(" This compresses the input image using the default parameters, i.e.,\n"); printf(" using the Rice compression algorithm and using row by row tiles.\n"); printf("\n"); printf("2) imcopy cimage.fit image2.fit\n"); printf("\n"); printf(" This uncompresses the image created in the first example.\n"); printf(" image2.fit should be identical to image.fit if the image\n"); printf(" has an integer datatype. There will be small differences\n"); printf(" in the pixel values if it is a floating point image.\n"); printf("\n"); printf("3) imcopy image.fit 'cimage.fit[compress GZIP 100,100;q 16]'\n"); printf("\n"); printf(" This compresses the input image using the following parameters:\n"); printf(" GZIP compression algorithm;\n"); printf(" 100 X 100 pixel compression tiles;\n"); printf(" quantization level = 16 (only used with floating point images)\n"); printf("\n"); printf("The full syntax of the compression qualifier is:\n"); printf(" [compress ALGORITHM TDIM1,TDIM2,...; q QLEVEL s SCALE]\n"); printf("where the allowed ALGORITHM values are:\n"); printf(" Rice, HCOMPRESS, HSCOMPRESS, GZIP, or PLIO. \n"); printf(" (HSCOMPRESS is a variant of HCOMPRESS in which a small\n"); printf(" amount of smoothing is applied to the uncompressed image\n"); printf(" to help suppress blocky compression artifacts in the image\n"); printf(" when using large values for the 'scale' parameter).\n"); printf("TDIMn is the size of the compression tile in each dimension,\n"); printf("\n"); printf("QLEVEL specifies the quantization level when converting a floating\n"); printf("point image into integers, prior to compressing the image. The\n"); printf("default value = 16, which means the image will be quantized into\n"); printf("integer levels that are spaced at intervals of sigma/16., where \n"); printf("sigma is the estimated noise level in background areas of the image.\n"); printf("If QLEVEL is negative, this means use the absolute value for the\n"); printf("quantization spacing (e.g. 'q -0.005' means quantize the floating\n"); printf("point image such that the scaled integers represent steps of 0.005\n"); printf("in the original image).\n"); printf("\n"); printf("SCALE is the integer scale factor that only applies to the HCOMPRESS\n"); printf("algorithm. The default value SCALE = 0 forces the image to be\n"); printf("losslessly compressed; Greater amounts of lossy compression (resulting\n"); printf("in smaller compressed files) can be specified with larger SCALE values.\n"); printf("\n"); printf("\n"); printf("Note that it may be necessary to enclose the file names\n"); printf("in single quote characters on the Unix command line.\n"); return(0); } /* Open the input file and create output file */ fits_open_file(&infptr, argv[1], READONLY, &status); fits_create_file(&outfptr, argv[2], &status); if (status != 0) { fits_report_error(stderr, status); return(status); } fits_get_hdu_num(infptr, &hdupos); /* Get the current HDU position */ /* Copy only a single HDU if a specific extension was given */ if (hdupos != 1 || strchr(argv[1], '[')) single = 1; for (; !status; hdupos++) /* Main loop through each extension */ { fits_get_hdu_type(infptr, &hdutype, &status); if (hdutype == IMAGE_HDU) { /* get image dimensions and total number of pixels in image */ for (ii = 0; ii < 9; ii++) naxes[ii] = 1; fits_get_img_param(infptr, 9, &bitpix, &naxis, naxes, &status); totpix = naxes[0] * naxes[1] * naxes[2] * naxes[3] * naxes[4] * naxes[5] * naxes[6] * naxes[7] * naxes[8]; } if (hdutype != IMAGE_HDU || naxis == 0 || totpix == 0) { /* just copy tables and null images */ fits_copy_hdu(infptr, outfptr, 0, &status); } else { /* Explicitly create new image, to support compression */ fits_create_img(outfptr, bitpix, naxis, naxes, &status); if (status) { fits_report_error(stderr, status); return(status); } if (fits_is_compressed_image(outfptr, &status)) { /* write default EXTNAME keyword if it doesn't already exist */ tstatus = 0; fits_read_card(infptr, "EXTNAME", card, &tstatus); if (tstatus) { strcpy(card, "EXTNAME = 'COMPRESSED_IMAGE' / name of this binary table extension"); fits_write_record(outfptr, card, &status); } } /* copy all the user keywords (not the structural keywords) */ fits_get_hdrspace(infptr, &nkeys, NULL, &status); for (ii = 1; ii <= nkeys; ii++) { fits_read_record(infptr, ii, card, &status); if (fits_get_keyclass(card) > TYP_CMPRS_KEY) fits_write_record(outfptr, card, &status); } /* delete default EXTNAME keyword if it exists */ /* if (!fits_is_compressed_image(outfptr, &status)) { tstatus = 0; fits_read_key(outfptr, TSTRING, "EXTNAME", card, NULL, &tstatus); if (!tstatus) { if (strcmp(card, "COMPRESSED_IMAGE") == 0) fits_delete_key(outfptr, "EXTNAME", &status); } } */ switch(bitpix) { case BYTE_IMG: datatype = TBYTE; break; case SHORT_IMG: datatype = TSHORT; break; case LONG_IMG: datatype = TINT; break; case FLOAT_IMG: datatype = TFLOAT; break; case DOUBLE_IMG: datatype = TDOUBLE; break; } bytepix = abs(bitpix) / 8; npix = totpix; iteration = 0; /* try to allocate memory for the entire image */ /* use double type to force memory alignment */ array = (double *) calloc(npix, bytepix); /* if allocation failed, divide size by 2 and try again */ while (!array && iteration < 10) { iteration++; npix = npix / 2; array = (double *) calloc(npix, bytepix); } if (!array) { printf("Memory allocation error\n"); return(0); } /* turn off any scaling so that we copy the raw pixel values */ fits_set_bscale(infptr, bscale, bzero, &status); fits_set_bscale(outfptr, bscale, bzero, &status); first = 1; while (totpix > 0 && !status) { /* read all or part of image then write it back to the output file */ fits_read_img(infptr, datatype, first, npix, &nulval, array, &anynul, &status); fits_write_img(outfptr, datatype, first, npix, array, &status); totpix = totpix - npix; first = first + npix; } free(array); } if (single) break; /* quit if only copying a single HDU */ fits_movrel_hdu(infptr, 1, NULL, &status); /* try to move to next HDU */ } if (status == END_OF_FILE) status = 0; /* Reset after normal error */ fits_close_file(outfptr, &status); fits_close_file(infptr, &status); /* if error occurred, print out error message */ if (status) fits_report_error(stderr, status); return(status); } healpy-1.8.1/cfitsio/getcoluk.c0000654000175000017530000021750412272000775017047 0ustar zoncaplanck00000000000000/* This file, getcolk.c, contains routines that read data elements from */ /* a FITS image or table, with 'unsigned int' data type. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffgpvuk( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ unsigned int nulval, /* I - value for undefined pixels */ unsigned int *array, /* O - array of values that are returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Undefined elements will be set equal to NULVAL, unless NULVAL=0 in which case no checking for undefined values will be performed. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { long row; char cdummy; int nullcheck = 1; unsigned int nullvalue; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ nullvalue = nulval; /* set local variable */ fits_read_compressed_pixels(fptr, TUINT, firstelem, nelem, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgcluk(fptr, 2, row, firstelem, nelem, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgpfuk(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ unsigned int *array, /* O - array of values that are returned */ char *nularray, /* O - array of null pixel flags */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any undefined pixels in the returned array will be set = 0 and the corresponding nularray value will be set = 1. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { long row; int nullcheck = 2; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_read_compressed_pixels(fptr, TUINT, firstelem, nelem, nullcheck, NULL, array, nularray, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgcluk(fptr, 2, row, firstelem, nelem, 1, 2, 0L, array, nularray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffg2duk(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ unsigned int nulval, /* set undefined pixels equal to this */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ unsigned int *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an entire 2-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any null values in the array will be set equal to the value of nulval, unless nulval = 0 in which case no null checking will be performed. */ { /* call the 3D reading routine, with the 3rd dimension = 1 */ ffg3duk(fptr, group, nulval, ncols, naxis2, naxis1, naxis2, 1, array, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffg3duk(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ unsigned int nulval, /* set undefined pixels equal to this */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG nrows, /* I - number of rows in each plane of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ LONGLONG naxis3, /* I - FITS image NAXIS3 value */ unsigned int *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an entire 3-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any null values in the array will be set equal to the value of nulval, unless nulval = 0 in which case no null checking will be performed. */ { long tablerow, ii, jj; char cdummy; int nullcheck = 1; long inc[] = {1,1,1}; LONGLONG fpixel[] = {1,1,1}, nfits, narray; LONGLONG lpixel[3]; unsigned int nullvalue; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ lpixel[0] = ncols; lpixel[1] = nrows; lpixel[2] = naxis3; nullvalue = nulval; /* set local variable */ fits_read_compressed_img(fptr, TUINT, fpixel, lpixel, inc, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ tablerow=maxvalue(1,group); if (ncols == naxis1 && nrows == naxis2) /* arrays have same size? */ { /* all the image pixels are contiguous, so read all at once */ ffgcluk(fptr, 2, tablerow, 1, naxis1 * naxis2 * naxis3, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } if (ncols < naxis1 || nrows < naxis2) return(*status = BAD_DIMEN); nfits = 1; /* next pixel in FITS image to read */ narray = 0; /* next pixel in output array to be filled */ /* loop over naxis3 planes in the data cube */ for (jj = 0; jj < naxis3; jj++) { /* loop over the naxis2 rows in the FITS image, */ /* reading naxis1 pixels to each row */ for (ii = 0; ii < naxis2; ii++) { if (ffgcluk(fptr, 2, tablerow, nfits, naxis1, 1, 1, nulval, &array[narray], &cdummy, anynul, status) > 0) return(*status); nfits += naxis1; narray += ncols; } narray += (nrows - naxis2) * ncols; } return(*status); } /*--------------------------------------------------------------------------*/ int ffgsvuk(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of the column to read (1 = 1st) */ int naxis, /* I - number of dimensions in the FITS array */ long *naxes, /* I - size of each dimension */ long *blc, /* I - 'bottom left corner' of the subsection */ long *trc, /* I - 'top right corner' of the subsection */ long *inc, /* I - increment to be applied in each dimension */ unsigned int nulval, /* I - value to set undefined pixels */ unsigned int *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read a subsection of data values from an image or a table column. This routine is set up to handle a maximum of nine dimensions. */ { long ii,i0, i1,i2,i3,i4,i5,i6,i7,i8,row,rstr,rstp,rinc; long str[9],stp[9],incr[9]; long nelem, nultyp, ninc, numcol; LONGLONG felem, dsize[10], blcll[9], trcll[9]; int hdutype, anyf; char ldummy, msg[FLEN_ERRMSG]; int nullcheck = 1; unsigned int nullvalue; if (naxis < 1 || naxis > 9) { sprintf(msg, "NAXIS = %d in call to ffgsvuk is out of range", naxis); ffpmsg(msg); return(*status = BAD_DIMEN); } if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ for (ii=0; ii < naxis; ii++) { blcll[ii] = blc[ii]; trcll[ii] = trc[ii]; } nullvalue = nulval; /* set local variable */ fits_read_compressed_img(fptr, TUINT, blcll, trcll, inc, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* if this is a primary array, then the input COLNUM parameter should be interpreted as the row number, and we will alway read the image data from column 2 (any group parameters are in column 1). */ if (ffghdt(fptr, &hdutype, status) > 0) return(*status); if (hdutype == IMAGE_HDU) { /* this is a primary array, or image extension */ if (colnum == 0) { rstr = 1; rstp = 1; } else { rstr = colnum; rstp = colnum; } rinc = 1; numcol = 2; } else { /* this is a table, so the row info is in the (naxis+1) elements */ rstr = blc[naxis]; rstp = trc[naxis]; rinc = inc[naxis]; numcol = colnum; } nultyp = 1; if (anynul) *anynul = FALSE; i0 = 0; for (ii = 0; ii < 9; ii++) { str[ii] = 1; stp[ii] = 1; incr[ii] = 1; dsize[ii] = 1; } for (ii = 0; ii < naxis; ii++) { if (trc[ii] < blc[ii]) { sprintf(msg, "ffgsvuk: illegal range specified for axis %ld", ii + 1); ffpmsg(msg); return(*status = BAD_PIX_NUM); } str[ii] = blc[ii]; stp[ii] = trc[ii]; incr[ii] = inc[ii]; dsize[ii + 1] = dsize[ii] * naxes[ii]; } if (naxis == 1 && naxes[0] == 1) { /* This is not a vector column, so read all the rows at once */ nelem = (rstp - rstr) / rinc + 1; ninc = rinc; rstp = rstr; } else { /* have to read each row individually, in all dimensions */ nelem = (stp[0] - str[0]) / inc[0] + 1; ninc = incr[0]; } for (row = rstr; row <= rstp; row += rinc) { for (i8 = str[8]; i8 <= stp[8]; i8 += incr[8]) { for (i7 = str[7]; i7 <= stp[7]; i7 += incr[7]) { for (i6 = str[6]; i6 <= stp[6]; i6 += incr[6]) { for (i5 = str[5]; i5 <= stp[5]; i5 += incr[5]) { for (i4 = str[4]; i4 <= stp[4]; i4 += incr[4]) { for (i3 = str[3]; i3 <= stp[3]; i3 += incr[3]) { for (i2 = str[2]; i2 <= stp[2]; i2 += incr[2]) { for (i1 = str[1]; i1 <= stp[1]; i1 += incr[1]) { felem=str[0] + (i1 - 1) * dsize[1] + (i2 - 1) * dsize[2] + (i3 - 1) * dsize[3] + (i4 - 1) * dsize[4] + (i5 - 1) * dsize[5] + (i6 - 1) * dsize[6] + (i7 - 1) * dsize[7] + (i8 - 1) * dsize[8]; if ( ffgcluk(fptr, numcol, row, felem, nelem, ninc, nultyp, nulval, &array[i0], &ldummy, &anyf, status) > 0) return(*status); if (anyf && anynul) *anynul = TRUE; i0 += nelem; } } } } } } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffgsfuk(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of the column to read (1 = 1st) */ int naxis, /* I - number of dimensions in the FITS array */ long *naxes, /* I - size of each dimension */ long *blc, /* I - 'bottom left corner' of the subsection */ long *trc, /* I - 'top right corner' of the subsection */ long *inc, /* I - increment to be applied in each dimension */ unsigned int *array, /* O - array to be filled and returned */ char *flagval, /* O - set to 1 if corresponding value is null */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read a subsection of data values from an image or a table column. This routine is set up to handle a maximum of nine dimensions. */ { long ii,i0, i1,i2,i3,i4,i5,i6,i7,i8,row,rstr,rstp,rinc; long str[9],stp[9],incr[9],dsize[10]; LONGLONG blcll[9], trcll[9]; long felem, nelem, nultyp, ninc, numcol; long nulval = 0; int hdutype, anyf; char msg[FLEN_ERRMSG]; int nullcheck = 2; if (naxis < 1 || naxis > 9) { sprintf(msg, "NAXIS = %d in call to ffgsvj is out of range", naxis); ffpmsg(msg); return(*status = BAD_DIMEN); } if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ for (ii=0; ii < naxis; ii++) { blcll[ii] = blc[ii]; trcll[ii] = trc[ii]; } fits_read_compressed_img(fptr, TUINT, blcll, trcll, inc, nullcheck, NULL, array, flagval, anynul, status); return(*status); } /* if this is a primary array, then the input COLNUM parameter should be interpreted as the row number, and we will alway read the image data from column 2 (any group parameters are in column 1). */ if (ffghdt(fptr, &hdutype, status) > 0) return(*status); if (hdutype == IMAGE_HDU) { /* this is a primary array, or image extension */ if (colnum == 0) { rstr = 1; rstp = 1; } else { rstr = colnum; rstp = colnum; } rinc = 1; numcol = 2; } else { /* this is a table, so the row info is in the (naxis+1) elements */ rstr = blc[naxis]; rstp = trc[naxis]; rinc = inc[naxis]; numcol = colnum; } nultyp = 2; if (anynul) *anynul = FALSE; i0 = 0; for (ii = 0; ii < 9; ii++) { str[ii] = 1; stp[ii] = 1; incr[ii] = 1; dsize[ii] = 1; } for (ii = 0; ii < naxis; ii++) { if (trc[ii] < blc[ii]) { sprintf(msg, "ffgsvj: illegal range specified for axis %ld", ii + 1); ffpmsg(msg); return(*status = BAD_PIX_NUM); } str[ii] = blc[ii]; stp[ii] = trc[ii]; incr[ii] = inc[ii]; dsize[ii + 1] = dsize[ii] * naxes[ii]; } if (naxis == 1 && naxes[0] == 1) { /* This is not a vector column, so read all the rows at once */ nelem = (rstp - rstr) / rinc + 1; ninc = rinc; rstp = rstr; } else { /* have to read each row individually, in all dimensions */ nelem = (stp[0] - str[0]) / inc[0] + 1; ninc = incr[0]; } for (row = rstr; row <= rstp; row += rinc) { for (i8 = str[8]; i8 <= stp[8]; i8 += incr[8]) { for (i7 = str[7]; i7 <= stp[7]; i7 += incr[7]) { for (i6 = str[6]; i6 <= stp[6]; i6 += incr[6]) { for (i5 = str[5]; i5 <= stp[5]; i5 += incr[5]) { for (i4 = str[4]; i4 <= stp[4]; i4 += incr[4]) { for (i3 = str[3]; i3 <= stp[3]; i3 += incr[3]) { for (i2 = str[2]; i2 <= stp[2]; i2 += incr[2]) { for (i1 = str[1]; i1 <= stp[1]; i1 += incr[1]) { felem=str[0] + (i1 - 1) * dsize[1] + (i2 - 1) * dsize[2] + (i3 - 1) * dsize[3] + (i4 - 1) * dsize[4] + (i5 - 1) * dsize[5] + (i6 - 1) * dsize[6] + (i7 - 1) * dsize[7] + (i8 - 1) * dsize[8]; if ( ffgcluk(fptr, numcol, row, felem, nelem, ninc, nultyp, nulval, &array[i0], &flagval[i0], &anyf, status) > 0) return(*status); if (anyf && anynul) *anynul = TRUE; i0 += nelem; } } } } } } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffggpuk( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ long firstelem, /* I - first vector element to read (1 = 1st) */ long nelem, /* I - number of values to read */ unsigned int *array, /* O - array of values that are returned */ int *status) /* IO - error status */ /* Read an array of group parameters from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). */ { long row; int idummy; char cdummy; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgcluk(fptr, 1, row, firstelem, nelem, 1, 1, 0L, array, &cdummy, &idummy, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcvuk(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ unsigned int nulval, /* I - value for null pixels */ unsigned int *array, /* O - array of values that are read */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Any undefined pixels will be set equal to the value of 'nulval' unless nulval = 0 in which case no checks for undefined pixels will be made. */ { char cdummy; ffgcluk(fptr, colnum, firstrow, firstelem, nelem, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcfuk(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ unsigned int *array, /* O - array of values that are read */ char *nularray, /* O - array of flags: 1 if null pixel; else 0 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Nularray will be set = 1 if the corresponding array pixel is undefined, otherwise nularray will = 0. */ { int dummy = 0; ffgcluk(fptr, colnum, firstrow, firstelem, nelem, 1, 2, dummy, array, nularray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcluk( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ long elemincre, /* I - pixel increment; e.g., 2 = every other */ int nultyp, /* I - null value handling code: */ /* 1: set undefined pixels = nulval */ /* 2: set nularray=1 for undefined pixels */ unsigned int nulval, /* I - value for null pixels if nultyp = 1 */ unsigned int *array, /* O - array of values that are read */ char *nularray, /* O - array of flags = 1 if nultyp = 2 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. The column number may refer to a real column in an ASCII or binary table, or it may refer be a virtual column in a 1 or more grouped FITS primary array or image extension. FITSIO treats a primary array as a binary table with 2 vector columns: the first column contains the group parameters (often with length = 0) and the second column contains the array of image pixels. Each row of the table represents a group in the case of multigroup FITS images. The output array of values will be converted from the datatype of the column and will be scaled by the FITS TSCALn and TZEROn values if necessary. */ { double scale, zero, power = 1., dtemp; int tcode, maxelem2, hdutype, xcode, decimals; long twidth, incre; long ii, xwidth, ntodo; int nulcheck; LONGLONG repeat, startpos, elemnum, readptr, tnull; LONGLONG rowlen, rownum, remain, next, rowincre, maxelem; char tform[20]; char message[81]; char snull[20]; /* the FITS null value if reading from ASCII table */ double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */ void *buffer; if (*status > 0 || nelem == 0) /* inherit input status value if > 0 */ return(*status); /* call the 'short' or 'long' version of this routine, if possible */ if (sizeof(int) == sizeof(short)) ffgclui(fptr, colnum, firstrow, firstelem, nelem, elemincre, nultyp, (unsigned short) nulval, (unsigned short *) array, nularray, anynul, status); else if (sizeof(int) == sizeof(long)) ffgcluj(fptr, colnum, firstrow, firstelem, nelem, elemincre, nultyp, (unsigned long) nulval, (unsigned long *) array, nularray, anynul, status); else { /* This is a special case: sizeof(int) is not equal to sizeof(short) or sizeof(long). This occurs on Alpha OSF systems where short = 2 bytes, int = 4 bytes, and long = 8 bytes. */ buffer = cbuff; if (anynul) *anynul = 0; if (nultyp == 2) memset(nularray, 0, (size_t) nelem); /* initialize nullarray */ /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if ( ffgcprll( fptr, colnum, firstrow, firstelem, nelem, 0, &scale, &zero, tform, &twidth, &tcode, &maxelem2, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0 ) return(*status); maxelem = maxelem2; incre *= elemincre; /* multiply incre to just get every nth pixel */ if (tcode == TSTRING) /* setup for ASCII tables */ { /* get the number of implied decimal places if no explicit decmal point */ ffasfm(tform, &xcode, &xwidth, &decimals, status); for(ii = 0; ii < decimals; ii++) power *= 10.; } /*------------------------------------------------------------------*/ /* Decide whether to check for null values in the input FITS file: */ /*------------------------------------------------------------------*/ nulcheck = nultyp; /* by default check for null values in the FITS file */ if (nultyp == 1 && nulval == 0) nulcheck = 0; /* calling routine does not want to check for nulls */ else if (tcode%10 == 1 && /* if reading an integer column, and */ tnull == NULL_UNDEFINED) /* if a null value is not defined, */ nulcheck = 0; /* then do not check for null values. */ else if (tcode == TSHORT && (tnull > SHRT_MAX || tnull < SHRT_MIN) ) nulcheck = 0; /* Impossible null value */ else if (tcode == TBYTE && (tnull > 255 || tnull < 0) ) nulcheck = 0; /* Impossible null value */ else if (tcode == TSTRING && snull[0] == ASCII_NULL_UNDEFINED) nulcheck = 0; /*----------------------------------------------------------------------*/ /* If FITS column and output data array have same datatype, then we do */ /* not need to use a temporary buffer to store intermediate datatype. */ /*----------------------------------------------------------------------*/ if (tcode == TLONG) /* Special Case: */ { /* data are 4-bytes long, so read */ /* data directly into output buffer. */ if (nelem < (LONGLONG)INT32_MAX/4) { maxelem = nelem; } else { maxelem = INT32_MAX/4; } } /*---------------------------------------------------------------------*/ /* Now read the pixels from the FITS column. If the column does not */ /* have the same datatype as the output array, then we have to read */ /* the raw values into a temporary buffer (of limited size). In */ /* the case of a vector colum read only 1 vector of values at a time */ /* then skip to the next row if more values need to be read. */ /* After reading the raw values, then call the fffXXYY routine to (1) */ /* test for undefined values, (2) convert the datatype if necessary, */ /* and (3) scale the values by the FITS TSCALn and TZEROn linear */ /* scaling parameters. */ /*---------------------------------------------------------------------*/ remain = nelem; /* remaining number of values to read */ next = 0; /* next element in array to be read */ rownum = 0; /* row number, relative to firstrow */ while (remain) { /* limit the number of pixels to read at one time to the number that will fit in the buffer or to the number of pixels that remain in the current vector, which ever is smaller. */ ntodo = (long) minvalue(remain, maxelem); ntodo = (long) minvalue(ntodo, ((repeat - elemnum - 1)/elemincre +1)); readptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * (incre / elemincre)); switch (tcode) { case (TLONG): ffgi4b(fptr, readptr, ntodo, incre, (INT32BIT *) &array[next], status); fffi4uint((INT32BIT *) &array[next], ntodo, scale, zero, nulcheck, (INT32BIT) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TLONGLONG): ffgi8b(fptr, readptr, ntodo, incre, (long *) buffer, status); fffi8uint( (LONGLONG *) buffer, ntodo, scale, zero, nulcheck, tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TBYTE): ffgi1b(fptr, readptr, ntodo, incre, (unsigned char *) buffer, status); fffi1uint((unsigned char *) buffer, ntodo, scale, zero,nulcheck, (unsigned char) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TSHORT): ffgi2b(fptr, readptr, ntodo, incre, (short *) buffer, status); fffi2uint((short *) buffer, ntodo, scale, zero, nulcheck, (short) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TFLOAT): ffgr4b(fptr, readptr, ntodo, incre, (float *) buffer, status); fffr4uint((float *) buffer, ntodo, scale, zero, nulcheck, nulval, &nularray[next], anynul, &array[next], status); break; case (TDOUBLE): ffgr8b(fptr, readptr, ntodo, incre, (double *) buffer, status); fffr8uint((double *) buffer, ntodo, scale, zero, nulcheck, nulval, &nularray[next], anynul, &array[next], status); break; case (TSTRING): ffmbyt(fptr, readptr, REPORT_EOF, status); if (incre == twidth) /* contiguous bytes */ ffgbyt(fptr, ntodo * twidth, buffer, status); else ffgbytoff(fptr, twidth, ntodo, incre - twidth, buffer, status); fffstruint((char *) buffer, ntodo, scale, zero, twidth, power, nulcheck, snull, nulval, &nularray[next], anynul, &array[next], status); break; default: /* error trap for invalid column format */ sprintf(message, "Cannot read numbers from column %d which has format %s", colnum, tform); ffpmsg(message); if (hdutype == ASCII_TBL) return(*status = BAD_ATABLE_FORMAT); else return(*status = BAD_BTABLE_FORMAT); } /* End of switch block */ /*-------------------------*/ /* Check for fatal error */ /*-------------------------*/ if (*status > 0) /* test for error during previous read operation */ { dtemp = (double) next; if (hdutype > 0) sprintf(message, "Error reading elements %.0f thru %.0f from column %d (ffgcluk).", dtemp+1., dtemp+ntodo, colnum); else sprintf(message, "Error reading elements %.0f thru %.0f from image (ffgcluk).", dtemp+1., dtemp+ntodo); ffpmsg(message); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain -= ntodo; if (remain) { next += ntodo; elemnum = elemnum + (ntodo * elemincre); if (elemnum >= repeat) /* completed a row; start on later row */ { rowincre = elemnum / repeat; rownum += rowincre; elemnum = elemnum - (rowincre * repeat); } } } /* End of main while Loop */ /*--------------------------------*/ /* check for numerical overflow */ /*--------------------------------*/ if (*status == OVERFLOW_ERR) { ffpmsg( "Numerical overflow during type conversion while reading FITS data."); *status = NUM_OVERFLOW; } } /* end of DEC Alpha special case */ return(*status); } /*--------------------------------------------------------------------------*/ int fffi1uint(unsigned char *input,/* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ unsigned char tnull, /* I - value of FITS TNULLn keyword if any */ unsigned int nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ unsigned int *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) output[ii] = (unsigned int) input[ii]; /* copy input */ } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DUINT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUINT_MAX) { *status = OVERFLOW_ERR; output[ii] = UINT_MAX; } else output[ii] = (unsigned int) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = (unsigned int) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DUINT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUINT_MAX) { *status = OVERFLOW_ERR; output[ii] = UINT_MAX; } else output[ii] = (unsigned int) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi2uint(short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ short tnull, /* I - value of FITS TNULLn keyword if any */ unsigned int nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ unsigned int *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < 0) { *status = OVERFLOW_ERR; output[ii] = 0; } else output[ii] = (unsigned int) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DUINT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUINT_MAX) { *status = OVERFLOW_ERR; output[ii] = UINT_MAX; } else output[ii] = (unsigned int) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { if (input[ii] < 0) { *status = OVERFLOW_ERR; output[ii] = 0; } else output[ii] = (unsigned int) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DUINT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUINT_MAX) { *status = OVERFLOW_ERR; output[ii] = UINT_MAX; } else output[ii] = (unsigned int) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi4uint(INT32BIT *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ INT32BIT tnull, /* I - value of FITS TNULLn keyword if any */ unsigned int nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ unsigned int *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 2147483648.) { /* Instead of adding 2147483648, it is more efficient */ /* to just flip the sign bit with the XOR operator */ for (ii = 0; ii < ntodo; ii++) output[ii] = ( *(unsigned int *) &input[ii] ) ^ 0x80000000; } else if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < 0) { *status = OVERFLOW_ERR; output[ii] = 0; } else output[ii] = (unsigned int) input[ii]; /* copy to output */ } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DUINT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUINT_MAX) { *status = OVERFLOW_ERR; output[ii] = UINT_MAX; } else output[ii] = (unsigned int) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 2147483648.) { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = ( *(unsigned int *) &input[ii] ) ^ 0x80000000; } } else if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else if (input[ii] < 0) { *status = OVERFLOW_ERR; output[ii] = 0; } else output[ii] = (unsigned int) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DUINT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUINT_MAX) { *status = OVERFLOW_ERR; output[ii] = UINT_MAX; } else output[ii] = (unsigned int) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi8uint(LONGLONG *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ LONGLONG tnull, /* I - value of FITS TNULLn keyword if any */ unsigned int nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ unsigned int *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < 0) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > UINT_MAX) { *status = OVERFLOW_ERR; output[ii] = UINT_MAX; } else output[ii] = (unsigned int) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DUINT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUINT_MAX) { *status = OVERFLOW_ERR; output[ii] = UINT_MAX; } else output[ii] = (unsigned int) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { if (input[ii] < 0) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > UINT_MAX) { *status = OVERFLOW_ERR; output[ii] = UINT_MAX; } else output[ii] = (unsigned int) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DUINT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUINT_MAX) { *status = OVERFLOW_ERR; output[ii] = UINT_MAX; } else output[ii] = (unsigned int) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffr4uint(float *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ unsigned int nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ unsigned int *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to NaN. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; short *sptr, iret; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < DUINT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > DUINT_MAX) { *status = OVERFLOW_ERR; output[ii] = UINT_MAX; } else output[ii] = (unsigned int) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DUINT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUINT_MAX) { *status = OVERFLOW_ERR; output[ii] = UINT_MAX; } else output[ii] = (unsigned int) dvalue; } } } else /* must check for null values */ { sptr = (short *) input; #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS sptr++; /* point to MSBs */ #endif if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++, sptr += 2) { if (0 != (iret = fnan(*sptr) ) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ output[ii] = 0; } else { if (input[ii] < DUINT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > DUINT_MAX) { *status = OVERFLOW_ERR; output[ii] = UINT_MAX; } else output[ii] = (unsigned int) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++, sptr += 2) { if (0 != (iret = fnan(*sptr) ) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ { if (zero < DUINT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (zero > DUINT_MAX) { *status = OVERFLOW_ERR; output[ii] = UINT_MAX; } else output[ii] = (unsigned int) zero; } } else { dvalue = input[ii] * scale + zero; if (dvalue < DUINT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUINT_MAX) { *status = OVERFLOW_ERR; output[ii] = UINT_MAX; } else output[ii] = (unsigned int) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffr8uint(double *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ unsigned int nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ unsigned int *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to NaN. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; short *sptr, iret; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < DUINT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > DUINT_MAX) { *status = OVERFLOW_ERR; output[ii] = UINT_MAX; } else output[ii] = (unsigned int) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DUINT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUINT_MAX) { *status = OVERFLOW_ERR; output[ii] = UINT_MAX; } else output[ii] = (unsigned int) dvalue; } } } else /* must check for null values */ { sptr = (short *) input; #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS sptr += 3; /* point to MSBs */ #endif if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++, sptr += 4) { if (0 != (iret = dnan(*sptr)) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ output[ii] = 0; } else { if (input[ii] < DUINT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (input[ii] > DUINT_MAX) { *status = OVERFLOW_ERR; output[ii] = UINT_MAX; } else output[ii] = (unsigned int) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++, sptr += 4) { if (0 != (iret = dnan(*sptr)) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ { if (zero < DUINT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (zero > DUINT_MAX) { *status = OVERFLOW_ERR; output[ii] = UINT_MAX; } else output[ii] = (unsigned int) zero; } } else { dvalue = input[ii] * scale + zero; if (dvalue < DUINT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUINT_MAX) { *status = OVERFLOW_ERR; output[ii] = UINT_MAX; } else output[ii] = (unsigned int) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffstruint(char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ long twidth, /* I - width of each substring of chars */ double implipower, /* I - power of 10 of implied decimal */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ char *snull, /* I - value of FITS null string, if any */ unsigned int nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ unsigned int *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to snull. If nullcheck= 0, then no special checking for nulls is performed. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { int nullen; long ii; double dvalue; char *cstring, message[81]; char *cptr, *tpos; char tempstore, chrzero = '0'; double val, power; int exponent, sign, esign, decpt; nullen = strlen(snull); cptr = input; /* pointer to start of input string */ for (ii = 0; ii < ntodo; ii++) { cstring = cptr; /* temporarily insert a null terminator at end of the string */ tpos = cptr + twidth; tempstore = *tpos; *tpos = 0; /* check if null value is defined, and if the */ /* column string is identical to the null string */ if (snull[0] != ASCII_NULL_UNDEFINED && !strncmp(snull, cptr, nullen) ) { if (nullcheck) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } cptr += twidth; } else { /* value is not the null value, so decode it */ /* remove any embedded blank characters from the string */ decpt = 0; sign = 1; val = 0.; power = 1.; exponent = 0; esign = 1; while (*cptr == ' ') /* skip leading blanks */ cptr++; if (*cptr == '-' || *cptr == '+') /* check for leading sign */ { if (*cptr == '-') sign = -1; cptr++; while (*cptr == ' ') /* skip blanks between sign and value */ cptr++; } while (*cptr >= '0' && *cptr <= '9') { val = val * 10. + *cptr - chrzero; /* accumulate the value */ cptr++; while (*cptr == ' ') /* skip embedded blanks in the value */ cptr++; } if (*cptr == '.' || *cptr == ',') /* check for decimal point */ { decpt = 1; /* set flag to show there was a decimal point */ cptr++; while (*cptr == ' ') /* skip any blanks */ cptr++; while (*cptr >= '0' && *cptr <= '9') { val = val * 10. + *cptr - chrzero; /* accumulate the value */ power = power * 10.; cptr++; while (*cptr == ' ') /* skip embedded blanks in the value */ cptr++; } } if (*cptr == 'E' || *cptr == 'D') /* check for exponent */ { cptr++; while (*cptr == ' ') /* skip blanks */ cptr++; if (*cptr == '-' || *cptr == '+') /* check for exponent sign */ { if (*cptr == '-') esign = -1; cptr++; while (*cptr == ' ') /* skip blanks between sign and exp */ cptr++; } while (*cptr >= '0' && *cptr <= '9') { exponent = exponent * 10 + *cptr - chrzero; /* accumulate exp */ cptr++; while (*cptr == ' ') /* skip embedded blanks */ cptr++; } } if (*cptr != 0) /* should end up at the null terminator */ { sprintf(message, "Cannot read number from ASCII table"); ffpmsg(message); sprintf(message, "Column field = %s.", cstring); ffpmsg(message); /* restore the char that was overwritten by the null */ *tpos = tempstore; return(*status = BAD_C2D); } if (!decpt) /* if no explicit decimal, use implied */ power = implipower; dvalue = (sign * val / power) * pow(10., (double) (esign * exponent)); dvalue = dvalue * scale + zero; /* apply the scaling */ if (dvalue < DUINT_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUINT_MAX) { *status = OVERFLOW_ERR; output[ii] = UINT_MAX; } else output[ii] = (long) dvalue; } /* restore the char that was overwritten by the null */ *tpos = tempstore; } return(*status); } healpy-1.8.1/cfitsio/grparser.h0000654000175000017530000001326512272000775017062 0ustar zoncaplanck00000000000000/* T E M P L A T E P A R S E R H E A D E R F I L E ===================================================== by Jerzy.Borkowski@obs.unige.ch Integral Science Data Center ch. d'Ecogia 16 1290 Versoix Switzerland 14-Oct-98: initial release 16-Oct-98: reference to fitsio.h removed, also removed strings after #endif directives to make gcc -Wall not to complain 20-Oct-98: added declarations NGP_XTENSION_SIMPLE and NGP_XTENSION_FIRST 24-Oct-98: prototype of ngp_read_line() function updated. 22-Jan-99: prototype for ngp_set_extver() function added. 20-Jun-2002 Wm Pence, added support for the HIERARCH keyword convention (changed NGP_MAX_NAME from (20) to FLEN_KEYWORD) */ #ifndef GRPARSER_H_INCLUDED #define GRPARSER_H_INCLUDED #ifdef __cplusplus extern "C" { #endif /* error codes - now defined in fitsio.h */ /* common constants definitions */ #define NGP_ALLOCCHUNK (1000) #define NGP_MAX_INCLUDE (10) /* include file nesting limit */ #define NGP_MAX_COMMENT (80) /* max size for comment */ #define NGP_MAX_NAME FLEN_KEYWORD /* max size for KEYWORD (FITS limits it to 8 chars) */ /* except HIERARCH can have longer effective keyword names */ #define NGP_MAX_STRING (80) /* max size for various strings */ #define NGP_MAX_ARRAY_DIM (999) /* max. number of dimensions in array */ #define NGP_MAX_FNAME (1000) /* max size of combined path+fname */ #define NGP_MAX_ENVFILES (10000) /* max size of CFITSIO_INCLUDE_FILES env. variable */ #define NGP_TOKEN_UNKNOWN (-1) /* token type unknown */ #define NGP_TOKEN_INCLUDE (0) /* \INCLUDE token */ #define NGP_TOKEN_GROUP (1) /* \GROUP token */ #define NGP_TOKEN_END (2) /* \END token */ #define NGP_TOKEN_XTENSION (3) /* XTENSION token */ #define NGP_TOKEN_SIMPLE (4) /* SIMPLE token */ #define NGP_TOKEN_EOF (5) /* End Of File pseudo token */ #define NGP_TTYPE_UNKNOWN (0) /* undef (yet) token type - invalid to print/write to disk */ #define NGP_TTYPE_BOOL (1) /* boolean, it is 'T' or 'F' */ #define NGP_TTYPE_STRING (2) /* something withing "" or starting with letter */ #define NGP_TTYPE_INT (3) /* starting with digit and not with '.' */ #define NGP_TTYPE_REAL (4) /* digits + '.' */ #define NGP_TTYPE_COMPLEX (5) /* 2 reals, separated with ',' */ #define NGP_TTYPE_NULL (6) /* NULL token, format is : NAME = / comment */ #define NGP_TTYPE_RAW (7) /* HISTORY/COMMENT/8SPACES + comment string without / */ #define NGP_FOUND_EQUAL_SIGN (1) /* line contains '=' after keyword name */ #define NGP_FORMAT_OK (0) /* line format OK */ #define NGP_FORMAT_ERROR (1) /* line format error */ #define NGP_NODE_INVALID (0) /* default node type - invalid (to catch errors) */ #define NGP_NODE_IMAGE (1) /* IMAGE type */ #define NGP_NODE_ATABLE (2) /* ASCII table type */ #define NGP_NODE_BTABLE (3) /* BINARY table type */ #define NGP_NON_SYSTEM_ONLY (0) /* save all keywords except NAXIS,BITPIX,etc.. */ #define NGP_REALLY_ALL (1) /* save really all keywords */ #define NGP_XTENSION_SIMPLE (1) /* HDU defined with SIMPLE T */ #define NGP_XTENSION_FIRST (2) /* this is first extension in template */ #define NGP_LINE_REREAD (1) /* reread line */ #define NGP_BITPIX_INVALID (-12345) /* default BITPIX (to catch errors) */ /* common macro definitions */ #ifdef NGP_PARSER_DEBUG_MALLOC #define ngp_alloc(x) dal_malloc(x) #define ngp_free(x) dal_free(x) #define ngp_realloc(x,y) dal_realloc(x,y) #else #define ngp_alloc(x) malloc(x) #define ngp_free(x) free(x) #define ngp_realloc(x,y) realloc(x,y) #endif /* type definitions */ typedef struct NGP_RAW_LINE_STRUCT { char *line; char *name; char *value; int type; char *comment; int format; int flags; } NGP_RAW_LINE; typedef union NGP_TOKVAL_UNION { char *s; /* space allocated separately, be careful !!! */ char b; int i; double d; struct NGP_COMPLEX_STRUCT { double re; double im; } c; /* complex value */ } NGP_TOKVAL; typedef struct NGP_TOKEN_STRUCT { int type; char name[NGP_MAX_NAME]; NGP_TOKVAL value; char comment[NGP_MAX_COMMENT]; } NGP_TOKEN; typedef struct NGP_HDU_STRUCT { int tokcnt; NGP_TOKEN *tok; } NGP_HDU; typedef struct NGP_TKDEF_STRUCT { char *name; int code; } NGP_TKDEF; typedef struct NGP_EXTVER_TAB_STRUCT { char *extname; int version; } NGP_EXTVER_TAB; /* globally visible variables declarations */ extern NGP_RAW_LINE ngp_curline; extern NGP_RAW_LINE ngp_prevline; extern int ngp_extver_tab_size; extern NGP_EXTVER_TAB *ngp_extver_tab; /* globally visible functions declarations */ int ngp_get_extver(char *extname, int *version); int ngp_set_extver(char *extname, int version); int ngp_delete_extver_tab(void); int ngp_strcasecmp(char *p1, char *p2); int ngp_strcasencmp(char *p1, char *p2, int n); int ngp_line_from_file(FILE *fp, char **p); int ngp_free_line(void); int ngp_free_prevline(void); int ngp_read_line_buffered(FILE *fp); int ngp_unread_line(void); int ngp_extract_tokens(NGP_RAW_LINE *cl); int ngp_include_file(char *fname); int ngp_read_line(int ignore_blank_lines); int ngp_keyword_is_write(NGP_TOKEN *ngp_tok); int ngp_keyword_all_write(NGP_HDU *ngph, fitsfile *ffp, int mode); int ngp_hdu_init(NGP_HDU *ngph); int ngp_hdu_clear(NGP_HDU *ngph); int ngp_hdu_insert_token(NGP_HDU *ngph, NGP_TOKEN *newtok); int ngp_append_columns(fitsfile *ff, NGP_HDU *ngph, int aftercol); int ngp_read_xtension(fitsfile *ff, int parent_hn, int simple_mode); int ngp_read_group(fitsfile *ff, char *grpname, int parent_hn); /* top level API function - now defined in fitsio.h */ #ifdef __cplusplus } #endif #endif healpy-1.8.1/cfitsio/drvrsmem.c0000654000175000017530000011306612272000775017067 0ustar zoncaplanck00000000000000/* S H A R E D M E M O R Y D R I V E R ======================================= by Jerzy.Borkowski@obs.unige.ch 09-Mar-98 : initial version 1.0 released 23-Mar-98 : shared_malloc now accepts new handle as an argument 23-Mar-98 : shmem://0, shmem://1, etc changed to shmem://h0, etc due to bug in url parser. 10-Apr-98 : code cleanup 13-May-99 : delayed initialization added, global table deleted on exit when no shmem segments remain, and last process terminates */ #ifdef HAVE_SHMEM_SERVICES #include "fitsio2.h" /* drvrsmem.h is included by it */ #include #include #include #include #include #include #include #if defined(unix) || defined(__unix__) || defined(__unix) #include #endif static int shared_kbase = 0; /* base for shared memory handles */ static int shared_maxseg = 0; /* max number of shared memory blocks */ static int shared_range = 0; /* max number of tried entries */ static int shared_fd = SHARED_INVALID; /* handle of global access lock file */ static int shared_gt_h = SHARED_INVALID; /* handle of global table segment */ static SHARED_LTAB *shared_lt = NULL; /* local table pointer */ static SHARED_GTAB *shared_gt = NULL; /* global table pointer */ static int shared_create_mode = 0666; /* permission flags for created objects */ static int shared_debug = 1; /* simple debugging tool, set to 0 to disable messages */ static int shared_init_called = 0; /* flag whether shared_init() has been called, used for delayed init */ /* static support routines prototypes */ static int shared_clear_entry(int idx); /* unconditionally clear entry */ static int shared_destroy_entry(int idx); /* unconditionally destroy sema & shseg and clear entry */ static int shared_mux(int idx, int mode); /* obtain exclusive access to specified segment */ static int shared_demux(int idx, int mode); /* free exclusive access to specified segment */ static int shared_process_count(int sem); /* valid only for time of invocation */ static int shared_delta_process(int sem, int delta); /* change number of processes hanging on segment */ static int shared_attach_process(int sem); static int shared_detach_process(int sem); static int shared_get_free_entry(int newhandle); /* get free entry in shared_key, or -1, entry is set rw locked */ static int shared_get_hash(long size, int idx);/* return hash value for malloc */ static long shared_adjust_size(long size); /* size must be >= 0 !!! */ static int shared_check_locked_index(int idx); /* verify that given idx is valid */ static int shared_map(int idx); /* map all tables for given idx, check for validity */ static int shared_validate(int idx, int mode); /* use intrnally inside crit.sect !!! */ /* support routines - initialization */ static int shared_clear_entry(int idx) /* unconditionally clear entry */ { if ((idx < 0) || (idx >= shared_maxseg)) return(SHARED_BADARG); shared_gt[idx].key = SHARED_INVALID; /* clear entries in global table */ shared_gt[idx].handle = SHARED_INVALID; shared_gt[idx].sem = SHARED_INVALID; shared_gt[idx].semkey = SHARED_INVALID; shared_gt[idx].nprocdebug = 0; shared_gt[idx].size = 0; shared_gt[idx].attr = 0; return(SHARED_OK); } static int shared_destroy_entry(int idx) /* unconditionally destroy sema & shseg and clear entry */ { int r, r2; union semun filler; if ((idx < 0) || (idx >= shared_maxseg)) return(SHARED_BADARG); r2 = r = SHARED_OK; filler.val = 0; /* this is to make cc happy (warning otherwise) */ if (SHARED_INVALID != shared_gt[idx].sem) r = semctl(shared_gt[idx].sem, 0, IPC_RMID, filler); /* destroy semaphore */ if (SHARED_INVALID != shared_gt[idx].handle) r2 = shmctl(shared_gt[idx].handle, IPC_RMID, 0); /* destroy shared memory segment */ if (SHARED_OK == r) r = r2; /* accumulate error code in r, free r2 */ r2 = shared_clear_entry(idx); return((SHARED_OK == r) ? r2 : r); } void shared_cleanup(void) /* this must (should) be called during exit/abort */ { int i, j, r, oktodelete, filelocked, segmentspresent; flock_t flk; struct shmid_ds ds; if (shared_debug) printf("shared_cleanup:"); if (NULL != shared_lt) { if (shared_debug) printf(" deleting segments:"); for (i=0; i>\n"); return; } int shared_init(int debug_msgs) /* initialize shared memory stuff, you have to call this routine once */ { int i; char buf[1000], *p; mode_t oldumask; shared_init_called = 1; /* tell everybody no need to call us for the 2nd time */ shared_debug = debug_msgs; /* set required debug mode */ if (shared_debug) printf("shared_init:"); shared_kbase = 0; /* adapt to current env. settings */ if (NULL != (p = getenv(SHARED_ENV_KEYBASE))) shared_kbase = atoi(p); if (0 == shared_kbase) shared_kbase = SHARED_KEYBASE; if (shared_debug) printf(" keybase=%d", shared_kbase); shared_maxseg = 0; if (NULL != (p = getenv(SHARED_ENV_MAXSEG))) shared_maxseg = atoi(p); if (0 == shared_maxseg) shared_maxseg = SHARED_MAXSEG; if (shared_debug) printf(" maxseg=%d", shared_maxseg); shared_range = 3 * shared_maxseg; if (SHARED_INVALID == shared_fd) /* create rw locking file (this file is never deleted) */ { if (shared_debug) printf(" lockfileinit="); sprintf(buf, "%s.%d.%d", SHARED_FDNAME, shared_kbase, shared_maxseg); oldumask = umask(0); shared_fd = open(buf, O_TRUNC | O_EXCL | O_CREAT | O_RDWR, shared_create_mode); umask(oldumask); if (SHARED_INVALID == shared_fd) /* or just open rw locking file, in case it already exists */ { shared_fd = open(buf, O_TRUNC | O_RDWR, shared_create_mode); if (SHARED_INVALID == shared_fd) return(SHARED_NOFILE); if (shared_debug) printf("slave"); } else { if (shared_debug) printf("master"); } } if (SHARED_INVALID == shared_gt_h) /* global table not attached, try to create it in shared memory */ { if (shared_debug) printf(" globalsharedtableinit="); shared_gt_h = shmget(shared_kbase, shared_maxseg * sizeof(SHARED_GTAB), IPC_CREAT | IPC_EXCL | shared_create_mode); /* try open as a master */ if (SHARED_INVALID == shared_gt_h) /* if failed, try to open as a slave */ { shared_gt_h = shmget(shared_kbase, shared_maxseg * sizeof(SHARED_GTAB), shared_create_mode); if (SHARED_INVALID == shared_gt_h) return(SHARED_IPCERR); /* means deleted ID residing in system, shared mem unusable ... */ shared_gt = (SHARED_GTAB *)shmat(shared_gt_h, 0, 0); /* attach segment */ if (((SHARED_GTAB *)SHARED_INVALID) == shared_gt) return(SHARED_IPCERR); if (shared_debug) printf("slave"); } else { shared_gt = (SHARED_GTAB *)shmat(shared_gt_h, 0, 0); /* attach segment */ if (((SHARED_GTAB *)SHARED_INVALID) == shared_gt) return(SHARED_IPCERR); for (i=0; i>\n"); return(SHARED_OK); } int shared_recover(int id) /* try to recover dormant segments after applic crash */ { int i, r, r2; if (NULL == shared_gt) return(SHARED_NOTINIT); /* not initialized */ if (NULL == shared_lt) return(SHARED_NOTINIT); /* not initialized */ r = SHARED_OK; for (i=0; i r2) || (0 == r2)) { if (shared_debug) printf("Bogus handle=%d nproc=%d sema=%d:", i, shared_gt[i].nprocdebug, r2); r = shared_destroy_entry(i); if (shared_debug) { printf("%s", r ? "error couldn't clear handle" : "handle cleared"); } } shared_demux(i, SHARED_RDWRITE); } return(r); /* table full */ } /* API routines - mutexes and locking */ static int shared_mux(int idx, int mode) /* obtain exclusive access to specified segment */ { flock_t flk; int r; if (0 == shared_init_called) /* delayed initialization */ { if (SHARED_OK != (r = shared_init(0))) return(r); } if (SHARED_INVALID == shared_fd) return(SHARED_NOTINIT); if ((idx < 0) || (idx >= shared_maxseg)) return(SHARED_BADARG); flk.l_type = ((mode & SHARED_RDWRITE) ? F_WRLCK : F_RDLCK); flk.l_whence = 0; flk.l_start = idx; flk.l_len = 1; if (shared_debug) printf(" [mux (%d): ", idx); if (-1 == fcntl(shared_fd, ((mode & SHARED_NOWAIT) ? F_SETLK : F_SETLKW), &flk)) { switch (errno) { case EAGAIN: ; case EACCES: if (shared_debug) printf("again]"); return(SHARED_AGAIN); default: if (shared_debug) printf("err]"); return(SHARED_IPCERR); } } if (shared_debug) printf("ok]"); return(SHARED_OK); } static int shared_demux(int idx, int mode) /* free exclusive access to specified segment */ { flock_t flk; if (SHARED_INVALID == shared_fd) return(SHARED_NOTINIT); if ((idx < 0) || (idx >= shared_maxseg)) return(SHARED_BADARG); flk.l_type = F_UNLCK; flk.l_whence = 0; flk.l_start = idx; flk.l_len = 1; if (shared_debug) printf(" [demux (%d): ", idx); if (-1 == fcntl(shared_fd, F_SETLKW, &flk)) { switch (errno) { case EAGAIN: ; case EACCES: if (shared_debug) printf("again]"); return(SHARED_AGAIN); default: if (shared_debug) printf("err]"); return(SHARED_IPCERR); } } if (shared_debug) printf("mode=%d ok]", mode); return(SHARED_OK); } static int shared_process_count(int sem) /* valid only for time of invocation */ { union semun su; su.val = 0; /* to force compiler not to give warning messages */ return(semctl(sem, 0, GETVAL, su)); /* su is unused here */ } static int shared_delta_process(int sem, int delta) /* change number of processes hanging on segment */ { struct sembuf sb; if (SHARED_INVALID == sem) return(SHARED_BADARG); /* semaphore not attached */ sb.sem_num = 0; sb.sem_op = delta; sb.sem_flg = SEM_UNDO; return((-1 == semop(sem, &sb, 1)) ? SHARED_IPCERR : SHARED_OK); } static int shared_attach_process(int sem) { if (shared_debug) printf(" [attach process]"); return(shared_delta_process(sem, 1)); } static int shared_detach_process(int sem) { if (shared_debug) printf(" [detach process]"); return(shared_delta_process(sem, -1)); } /* API routines - hashing and searching */ static int shared_get_free_entry(int newhandle) /* get newhandle, or -1, entry is set rw locked */ { if (NULL == shared_gt) return(-1); /* not initialized */ if (NULL == shared_lt) return(-1); /* not initialized */ if (newhandle < 0) return(-1); if (newhandle >= shared_maxseg) return(-1); if (shared_lt[newhandle].tcnt) return(-1); /* somebody (we) is using it */ if (shared_mux(newhandle, SHARED_NOWAIT | SHARED_RDWRITE)) return(-1); /* used by others */ if (SHARED_INVALID == shared_gt[newhandle].key) return(newhandle); /* we have found free slot, lock it and return index */ shared_demux(newhandle, SHARED_RDWRITE); if (shared_debug) printf("[free_entry - ERROR - entry unusable]"); return(-1); /* table full */ } static int shared_get_hash(long size, int idx) /* return hash value for malloc */ { static int counter = 0; int hash; hash = (counter + size * idx) % shared_range; counter = (counter + 1) % shared_range; return(hash); } static long shared_adjust_size(long size) /* size must be >= 0 !!! */ { return(((size + sizeof(BLKHEAD) + SHARED_GRANUL - 1) / SHARED_GRANUL) * SHARED_GRANUL); } /* API routines - core : malloc/realloc/free/attach/detach/lock/unlock */ int shared_malloc(long size, int mode, int newhandle) /* return idx or SHARED_INVALID */ { int h, i, r, idx, key; union semun filler; BLKHEAD *bp; if (0 == shared_init_called) /* delayed initialization */ { if (SHARED_OK != (r = shared_init(0))) return(r); } if (shared_debug) printf("malloc (size = %ld, mode = %d):", size, mode); if (size < 0) return(SHARED_INVALID); if (-1 == (idx = shared_get_free_entry(newhandle))) return(SHARED_INVALID); if (shared_debug) printf(" idx=%d", idx); for (i = 0; ; i++) { if (i >= shared_range) /* table full, signal error & exit */ { shared_demux(idx, SHARED_RDWRITE); return(SHARED_INVALID); } key = shared_kbase + ((i + shared_get_hash(size, idx)) % shared_range); if (shared_debug) printf(" key=%d", key); h = shmget(key, shared_adjust_size(size), IPC_CREAT | IPC_EXCL | shared_create_mode); if (shared_debug) printf(" handle=%d", h); if (SHARED_INVALID == h) continue; /* segment already accupied */ bp = (BLKHEAD *)shmat(h, 0, 0); /* try attach */ if (shared_debug) printf(" p=%p", bp); if (((BLKHEAD *)SHARED_INVALID) == bp) /* cannot attach, delete segment, try with another key */ { shmctl(h, IPC_RMID, 0); continue; } /* now create semaphor counting number of processes attached */ if (SHARED_INVALID == (shared_gt[idx].sem = semget(key, 1, IPC_CREAT | IPC_EXCL | shared_create_mode))) { shmdt((void *)bp); /* cannot create segment, delete everything */ shmctl(h, IPC_RMID, 0); continue; /* try with another key */ } if (shared_debug) printf(" sem=%d", shared_gt[idx].sem); if (shared_attach_process(shared_gt[idx].sem)) /* try attach process */ { semctl(shared_gt[idx].sem, 0, IPC_RMID, filler); /* destroy semaphore */ shmdt((char *)bp); /* detach shared mem segment */ shmctl(h, IPC_RMID, 0); /* destroy shared mem segment */ continue; /* try with another key */ } bp->s.tflag = BLOCK_SHARED; /* fill in data in segment's header (this is really not necessary) */ bp->s.ID[0] = SHARED_ID_0; bp->s.ID[1] = SHARED_ID_1; bp->s.handle = idx; /* used in yorick */ if (mode & SHARED_RESIZE) { if (shmdt((char *)bp)) r = SHARED_IPCERR; /* if segment is resizable, then detach segment */ shared_lt[idx].p = NULL; } else { shared_lt[idx].p = bp; } shared_lt[idx].tcnt = 1; /* one thread using segment */ shared_lt[idx].lkcnt = 0; /* no locks at the moment */ shared_lt[idx].seekpos = 0L; /* r/w pointer positioned at beg of block */ shared_gt[idx].handle = h; /* fill in data in global table */ shared_gt[idx].size = size; shared_gt[idx].attr = mode; shared_gt[idx].semkey = key; shared_gt[idx].key = key; shared_gt[idx].nprocdebug = 0; break; } shared_demux(idx, SHARED_RDWRITE); /* hope this will not fail */ return(idx); } int shared_attach(int idx) { int r, r2; if (SHARED_OK != (r = shared_mux(idx, SHARED_RDWRITE | SHARED_WAIT))) return(r); if (SHARED_OK != (r = shared_map(idx))) { shared_demux(idx, SHARED_RDWRITE); return(r); } if (shared_attach_process(shared_gt[idx].sem)) /* try attach process */ { shmdt((char *)(shared_lt[idx].p)); /* cannot attach process, detach everything */ shared_lt[idx].p = NULL; shared_demux(idx, SHARED_RDWRITE); return(SHARED_BADARG); } shared_lt[idx].tcnt++; /* one more thread is using segment */ if (shared_gt[idx].attr & SHARED_RESIZE) /* if resizeable, detach and return special pointer */ { if (shmdt((char *)(shared_lt[idx].p))) r = SHARED_IPCERR; /* if segment is resizable, then detach segment */ shared_lt[idx].p = NULL; } shared_lt[idx].seekpos = 0L; /* r/w pointer positioned at beg of block */ r2 = shared_demux(idx, SHARED_RDWRITE); return(r ? r : r2); } static int shared_check_locked_index(int idx) /* verify that given idx is valid */ { int r; if (0 == shared_init_called) /* delayed initialization */ { if (SHARED_OK != (r = shared_init(0))) return(r); } if ((idx < 0) || (idx >= shared_maxseg)) return(SHARED_BADARG); if (NULL == shared_lt[idx].p) return(SHARED_BADARG); /* NULL pointer, not attached ?? */ if (0 == shared_lt[idx].lkcnt) return(SHARED_BADARG); /* not locked ?? */ if ((SHARED_ID_0 != (shared_lt[idx].p)->s.ID[0]) || (SHARED_ID_1 != (shared_lt[idx].p)->s.ID[1]) || (BLOCK_SHARED != (shared_lt[idx].p)->s.tflag)) /* invalid data in segment */ return(SHARED_BADARG); return(SHARED_OK); } static int shared_map(int idx) /* map all tables for given idx, check for validity */ { int h; /* have to obtain excl. access before calling shared_map */ BLKHEAD *bp; if ((idx < 0) || (idx >= shared_maxseg)) return(SHARED_BADARG); if (SHARED_INVALID == shared_gt[idx].key) return(SHARED_BADARG); if (SHARED_INVALID == (h = shmget(shared_gt[idx].key, 1, shared_create_mode))) return(SHARED_BADARG); if (((BLKHEAD *)SHARED_INVALID) == (bp = (BLKHEAD *)shmat(h, 0, 0))) return(SHARED_BADARG); if ((SHARED_ID_0 != bp->s.ID[0]) || (SHARED_ID_1 != bp->s.ID[1]) || (BLOCK_SHARED != bp->s.tflag) || (h != shared_gt[idx].handle)) { shmdt((char *)bp); /* invalid segment, detach everything */ return(SHARED_BADARG); } if (shared_gt[idx].sem != semget(shared_gt[idx].semkey, 1, shared_create_mode)) /* check if sema is still there */ { shmdt((char *)bp); /* cannot attach semaphore, detach everything */ return(SHARED_BADARG); } shared_lt[idx].p = bp; /* store pointer to shmem data */ return(SHARED_OK); } static int shared_validate(int idx, int mode) /* use intrnally inside crit.sect !!! */ { int r; if (SHARED_OK != (r = shared_mux(idx, mode))) return(r); /* idx checked by shared_mux */ if (NULL == shared_lt[idx].p) if (SHARED_OK != (r = shared_map(idx))) { shared_demux(idx, mode); return(r); } if ((SHARED_ID_0 != (shared_lt[idx].p)->s.ID[0]) || (SHARED_ID_1 != (shared_lt[idx].p)->s.ID[1]) || (BLOCK_SHARED != (shared_lt[idx].p)->s.tflag)) { shared_demux(idx, mode); return(r); } return(SHARED_OK); } SHARED_P shared_realloc(int idx, long newsize) /* realloc shared memory segment */ { int h, key, i, r; BLKHEAD *bp; long transfersize; r = SHARED_OK; if (newsize < 0) return(NULL); if (shared_check_locked_index(idx)) return(NULL); if (0 == (shared_gt[idx].attr & SHARED_RESIZE)) return(NULL); if (-1 != shared_lt[idx].lkcnt) return(NULL); /* check for RW lock */ if (shared_adjust_size(shared_gt[idx].size) == shared_adjust_size(newsize)) { shared_gt[idx].size = newsize; return((SHARED_P)((shared_lt[idx].p) + 1)); } for (i = 0; ; i++) { if (i >= shared_range) return(NULL); /* table full, signal error & exit */ key = shared_kbase + ((i + shared_get_hash(newsize, idx)) % shared_range); h = shmget(key, shared_adjust_size(newsize), IPC_CREAT | IPC_EXCL | shared_create_mode); if (SHARED_INVALID == h) continue; /* segment already accupied */ bp = (BLKHEAD *)shmat(h, 0, 0); /* try attach */ if (((BLKHEAD *)SHARED_INVALID) == bp) /* cannot attach, delete segment, try with another key */ { shmctl(h, IPC_RMID, 0); continue; } *bp = *(shared_lt[idx].p); /* copy header, then data */ transfersize = ((newsize < shared_gt[idx].size) ? newsize : shared_gt[idx].size); if (transfersize > 0) memcpy((void *)(bp + 1), (void *)((shared_lt[idx].p) + 1), transfersize); if (shmdt((char *)(shared_lt[idx].p))) r = SHARED_IPCERR; /* try to detach old segment */ if (shmctl(shared_gt[idx].handle, IPC_RMID, 0)) if (SHARED_OK == r) r = SHARED_IPCERR; /* destroy old shared memory segment */ shared_gt[idx].size = newsize; /* signal new size */ shared_gt[idx].handle = h; /* signal new handle */ shared_gt[idx].key = key; /* signal new key */ shared_lt[idx].p = bp; break; } return((SHARED_P)(bp + 1)); } int shared_free(int idx) /* detach segment, if last process & !PERSIST, destroy segment */ { int cnt, r, r2; if (SHARED_OK != (r = shared_validate(idx, SHARED_RDWRITE | SHARED_WAIT))) return(r); if (SHARED_OK != (r = shared_detach_process(shared_gt[idx].sem))) /* update number of processes using segment */ { shared_demux(idx, SHARED_RDWRITE); return(r); } shared_lt[idx].tcnt--; /* update number of threads using segment */ if (shared_lt[idx].tcnt > 0) return(shared_demux(idx, SHARED_RDWRITE)); /* if more threads are using segment we are done */ if (shmdt((char *)(shared_lt[idx].p))) /* if, we are the last thread, try to detach segment */ { shared_demux(idx, SHARED_RDWRITE); return(SHARED_IPCERR); } shared_lt[idx].p = NULL; /* clear entry in local table */ shared_lt[idx].seekpos = 0L; /* r/w pointer positioned at beg of block */ if (-1 == (cnt = shared_process_count(shared_gt[idx].sem))) /* get number of processes hanging on segment */ { shared_demux(idx, SHARED_RDWRITE); return(SHARED_IPCERR); } if ((0 == cnt) && (0 == (shared_gt[idx].attr & SHARED_PERSIST))) r = shared_destroy_entry(idx); /* no procs on seg, destroy it */ r2 = shared_demux(idx, SHARED_RDWRITE); return(r ? r : r2); } SHARED_P shared_lock(int idx, int mode) /* lock given segment for exclusive access */ { int r; if (shared_mux(idx, mode)) return(NULL); /* idx checked by shared_mux */ if (0 != shared_lt[idx].lkcnt) /* are we already locked ?? */ if (SHARED_OK != (r = shared_map(idx))) { shared_demux(idx, mode); return(NULL); } if (NULL == shared_lt[idx].p) /* stupid pointer ?? */ if (SHARED_OK != (r = shared_map(idx))) { shared_demux(idx, mode); return(NULL); } if ((SHARED_ID_0 != (shared_lt[idx].p)->s.ID[0]) || (SHARED_ID_1 != (shared_lt[idx].p)->s.ID[1]) || (BLOCK_SHARED != (shared_lt[idx].p)->s.tflag)) { shared_demux(idx, mode); return(NULL); } if (mode & SHARED_RDWRITE) { shared_lt[idx].lkcnt = -1; shared_gt[idx].nprocdebug++; } else shared_lt[idx].lkcnt++; shared_lt[idx].seekpos = 0L; /* r/w pointer positioned at beg of block */ return((SHARED_P)((shared_lt[idx].p) + 1)); } int shared_unlock(int idx) /* unlock given segment, assumes seg is locked !! */ { int r, r2, mode; if (SHARED_OK != (r = shared_check_locked_index(idx))) return(r); if (shared_lt[idx].lkcnt > 0) { shared_lt[idx].lkcnt--; /* unlock read lock */ mode = SHARED_RDONLY; } else { shared_lt[idx].lkcnt = 0; /* unlock write lock */ shared_gt[idx].nprocdebug--; mode = SHARED_RDWRITE; } if (0 == shared_lt[idx].lkcnt) if (shared_gt[idx].attr & SHARED_RESIZE) { if (shmdt((char *)(shared_lt[idx].p))) r = SHARED_IPCERR; /* segment is resizable, then detach segment */ shared_lt[idx].p = NULL; /* signal detachment in local table */ } r2 = shared_demux(idx, mode); /* unlock segment, rest is only parameter checking */ return(r ? r : r2); } /* API routines - support and info routines */ int shared_attr(int idx) /* get the attributes of the shared memory segment */ { int r; if (shared_check_locked_index(idx)) return(SHARED_INVALID); r = shared_gt[idx].attr; return(r); } int shared_set_attr(int idx, int newattr) /* get the attributes of the shared memory segment */ { int r; if (shared_check_locked_index(idx)) return(SHARED_INVALID); if (-1 != shared_lt[idx].lkcnt) return(SHARED_INVALID); /* ADDED - check for RW lock */ r = shared_gt[idx].attr; shared_gt[idx].attr = newattr; return(r); } int shared_set_debug(int mode) /* set/reset debug mode */ { int r = shared_debug; shared_debug = mode; return(r); } int shared_set_createmode(int mode) /* set/reset debug mode */ { int r = shared_create_mode; shared_create_mode = mode; return(r); } int shared_list(int id) { int i, r; if (NULL == shared_gt) return(SHARED_NOTINIT); /* not initialized */ if (NULL == shared_lt) return(SHARED_NOTINIT); /* not initialized */ if (shared_debug) printf("shared_list:"); r = SHARED_OK; printf(" Idx Key Nproc Size Flags\n"); printf("==============================================\n"); for (i=0; i= SHARED_ERRBASE) { printf(" cannot clear PERSIST attribute"); } if (shared_free(i)) { printf(" delete failed\n"); } else { printf(" deleted\n"); } } if (shared_debug) printf(" done\n"); return(r); /* table full */ } /************************* CFITSIO DRIVER FUNCTIONS ***************************/ int smem_init(void) { return(0); } int smem_shutdown(void) { if (shared_init_called) shared_cleanup(); return(0); } int smem_setoptions(int option) { option = 0; return(0); } int smem_getoptions(int *options) { if (NULL == options) return(SHARED_NULPTR); *options = 0; return(0); } int smem_getversion(int *version) { if (NULL == version) return(SHARED_NULPTR); *version = 10; return(0); } int smem_open(char *filename, int rwmode, int *driverhandle) { int h, nitems, r; DAL_SHM_SEGHEAD *sp; if (NULL == filename) return(SHARED_NULPTR); if (NULL == driverhandle) return(SHARED_NULPTR); nitems = sscanf(filename, "h%d", &h); if (1 != nitems) return(SHARED_BADARG); if (SHARED_OK != (r = shared_attach(h))) return(r); if (NULL == (sp = (DAL_SHM_SEGHEAD *)shared_lock(h, ((READWRITE == rwmode) ? SHARED_RDWRITE : SHARED_RDONLY)))) { shared_free(h); return(SHARED_BADARG); } if ((h != sp->h) || (DAL_SHM_SEGHEAD_ID != sp->ID)) { shared_unlock(h); shared_free(h); return(SHARED_BADARG); } *driverhandle = h; return(0); } int smem_create(char *filename, int *driverhandle) { DAL_SHM_SEGHEAD *sp; int h, sz, nitems; if (NULL == filename) return(SHARED_NULPTR); /* currently ignored */ if (NULL == driverhandle) return(SHARED_NULPTR); nitems = sscanf(filename, "h%d", &h); if (1 != nitems) return(SHARED_BADARG); if (SHARED_INVALID == (h = shared_malloc(sz = 2880 + sizeof(DAL_SHM_SEGHEAD), SHARED_RESIZE | SHARED_PERSIST, h))) return(SHARED_NOMEM); if (NULL == (sp = (DAL_SHM_SEGHEAD *)shared_lock(h, SHARED_RDWRITE))) { shared_free(h); return(SHARED_BADARG); } sp->ID = DAL_SHM_SEGHEAD_ID; sp->h = h; sp->size = sz; sp->nodeidx = -1; *driverhandle = h; return(0); } int smem_close(int driverhandle) { int r; if (SHARED_OK != (r = shared_unlock(driverhandle))) return(r); return(shared_free(driverhandle)); } int smem_remove(char *filename) { int nitems, h, r; if (NULL == filename) return(SHARED_NULPTR); nitems = sscanf(filename, "h%d", &h); if (1 != nitems) return(SHARED_BADARG); if (0 == shared_check_locked_index(h)) /* are we locked ? */ { if (-1 != shared_lt[h].lkcnt) /* are we locked RO ? */ { if (SHARED_OK != (r = shared_unlock(h))) return(r); /* yes, so relock in RW */ if (NULL == shared_lock(h, SHARED_RDWRITE)) return(SHARED_BADARG); } } else /* not locked */ { if (SHARED_OK != (r = smem_open(filename, READWRITE, &h))) return(r); /* so open in RW mode */ } shared_set_attr(h, SHARED_RESIZE); /* delete PERSIST attribute */ return(smem_close(h)); /* detach segment (this will delete it) */ } int smem_size(int driverhandle, LONGLONG *size) { if (NULL == size) return(SHARED_NULPTR); if (shared_check_locked_index(driverhandle)) return(SHARED_INVALID); *size = (LONGLONG) (shared_gt[driverhandle].size - sizeof(DAL_SHM_SEGHEAD)); return(0); } int smem_flush(int driverhandle) { if (shared_check_locked_index(driverhandle)) return(SHARED_INVALID); return(0); } int smem_seek(int driverhandle, LONGLONG offset) { if (offset < 0) return(SHARED_BADARG); if (shared_check_locked_index(driverhandle)) return(SHARED_INVALID); shared_lt[driverhandle].seekpos = offset; return(0); } int smem_read(int driverhandle, void *buffer, long nbytes) { if (NULL == buffer) return(SHARED_NULPTR); if (shared_check_locked_index(driverhandle)) return(SHARED_INVALID); if (nbytes < 0) return(SHARED_BADARG); if ((shared_lt[driverhandle].seekpos + nbytes) > shared_gt[driverhandle].size) return(SHARED_BADARG); /* read beyond EOF */ memcpy(buffer, ((char *)(((DAL_SHM_SEGHEAD *)(shared_lt[driverhandle].p + 1)) + 1)) + shared_lt[driverhandle].seekpos, nbytes); shared_lt[driverhandle].seekpos += nbytes; return(0); } int smem_write(int driverhandle, void *buffer, long nbytes) { if (NULL == buffer) return(SHARED_NULPTR); if (shared_check_locked_index(driverhandle)) return(SHARED_INVALID); if (-1 != shared_lt[driverhandle].lkcnt) return(SHARED_INVALID); /* are we locked RW ? */ if (nbytes < 0) return(SHARED_BADARG); if ((unsigned long)(shared_lt[driverhandle].seekpos + nbytes) > (unsigned long)(shared_gt[driverhandle].size - sizeof(DAL_SHM_SEGHEAD))) { /* need to realloc shmem */ if (NULL == shared_realloc(driverhandle, shared_lt[driverhandle].seekpos + nbytes + sizeof(DAL_SHM_SEGHEAD))) return(SHARED_NOMEM); } memcpy(((char *)(((DAL_SHM_SEGHEAD *)(shared_lt[driverhandle].p + 1)) + 1)) + shared_lt[driverhandle].seekpos, buffer, nbytes); shared_lt[driverhandle].seekpos += nbytes; return(0); } #endif healpy-1.8.1/cfitsio/scalnull.c0000654000175000017530000002141512272000775017041 0ustar zoncaplanck00000000000000/* This file, scalnull.c, contains the FITSIO routines used to define */ /* the starting heap address, the value scaling and the null values. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffpthp(fitsfile *fptr, /* I - FITS file pointer */ long theap, /* I - starting addrss for the heap */ int *status) /* IO - error status */ /* Define the starting address for the heap for a binary table. The default address is NAXIS1 * NAXIS2. It is in units of bytes relative to the beginning of the regular binary table data. This routine also writes the appropriate THEAP keyword to the FITS header. */ { if (*status > 0 || theap < 1) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); (fptr->Fptr)->heapstart = theap; ffukyj(fptr, "THEAP", theap, "byte offset to heap area", status); return(*status); } /*--------------------------------------------------------------------------*/ int ffpscl(fitsfile *fptr, /* I - FITS file pointer */ double scale, /* I - scaling factor: value of BSCALE */ double zero, /* I - zero point: value of BZERO */ int *status) /* IO - error status */ /* Define the linear scaling factor for the primary array or image extension pixel values. This routine overrides the scaling values given by the BSCALE and BZERO keywords if present. Note that this routine does not write or modify the BSCALE and BZERO keywords, but instead only modifies the values temporarily in the internal buffer. Thus, a subsequent call to the ffrdef routine will reset the scaling back to the BSCALE and BZERO keyword values (or 1. and 0. respectively if the keywords are not present). */ { tcolumn *colptr; int hdutype; if (*status > 0) return(*status); if (scale == 0) return(*status = ZERO_SCALE); /* zero scale value is illegal */ if (ffghdt(fptr, &hdutype, status) > 0) /* get HDU type */ return(*status); if (hdutype != IMAGE_HDU) return(*status = NOT_IMAGE); /* not proper HDU type */ if (fits_is_compressed_image(fptr, status)) /* compressed images */ { (fptr->Fptr)->cn_bscale = scale; (fptr->Fptr)->cn_bzero = zero; return(*status); } /* set pointer to the first 'column' (contains group parameters if any) */ colptr = (fptr->Fptr)->tableptr; colptr++; /* increment to the 2nd 'column' pointer (the image itself) */ colptr->tscale = scale; colptr->tzero = zero; return(*status); } /*--------------------------------------------------------------------------*/ int ffpnul(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG nulvalue, /* I - null pixel value: value of BLANK */ int *status) /* IO - error status */ /* Define the value used to represent undefined pixels in the primary array or image extension. This only applies to integer image pixel (i.e. BITPIX > 0). This routine overrides the null pixel value given by the BLANK keyword if present. Note that this routine does not write or modify the BLANK keyword, but instead only modifies the value temporarily in the internal buffer. Thus, a subsequent call to the ffrdef routine will reset the null value back to the BLANK keyword value (or not defined if the keyword is not present). */ { tcolumn *colptr; int hdutype; if (*status > 0) return(*status); if (ffghdt(fptr, &hdutype, status) > 0) /* get HDU type */ return(*status); if (hdutype != IMAGE_HDU) return(*status = NOT_IMAGE); /* not proper HDU type */ if (fits_is_compressed_image(fptr, status)) /* ignore compressed images */ return(*status); /* set pointer to the first 'column' (contains group parameters if any) */ colptr = (fptr->Fptr)->tableptr; colptr++; /* increment to the 2nd 'column' pointer (the image itself) */ colptr->tnull = nulvalue; return(*status); } /*--------------------------------------------------------------------------*/ int fftscl(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - column number to apply scaling to */ double scale, /* I - scaling factor: value of TSCALn */ double zero, /* I - zero point: value of TZEROn */ int *status) /* IO - error status */ /* Define the linear scaling factor for the TABLE or BINTABLE extension column values. This routine overrides the scaling values given by the TSCALn and TZEROn keywords if present. Note that this routine does not write or modify the TSCALn and TZEROn keywords, but instead only modifies the values temporarily in the internal buffer. Thus, a subsequent call to the ffrdef routine will reset the scaling back to the TSCALn and TZEROn keyword values (or 1. and 0. respectively if the keywords are not present). */ { tcolumn *colptr; int hdutype; if (*status > 0) return(*status); if (scale == 0) return(*status = ZERO_SCALE); /* zero scale value is illegal */ if (ffghdt(fptr, &hdutype, status) > 0) /* get HDU type */ return(*status); if (hdutype == IMAGE_HDU) return(*status = NOT_TABLE); /* not proper HDU type */ colptr = (fptr->Fptr)->tableptr; /* set pointer to the first column */ colptr += (colnum - 1); /* increment to the correct column */ colptr->tscale = scale; colptr->tzero = zero; return(*status); } /*--------------------------------------------------------------------------*/ int fftnul(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - column number to apply nulvalue to */ LONGLONG nulvalue, /* I - null pixel value: value of TNULLn */ int *status) /* IO - error status */ /* Define the value used to represent undefined pixels in the BINTABLE column. This only applies to integer datatype columns (TFORM = B, I, or J). This routine overrides the null pixel value given by the TNULLn keyword if present. Note that this routine does not write or modify the TNULLn keyword, but instead only modifies the value temporarily in the internal buffer. Thus, a subsequent call to the ffrdef routine will reset the null value back to the TNULLn keyword value (or not defined if the keyword is not present). */ { tcolumn *colptr; int hdutype; if (*status > 0) return(*status); if (ffghdt(fptr, &hdutype, status) > 0) /* get HDU type */ return(*status); if (hdutype != BINARY_TBL) return(*status = NOT_BTABLE); /* not proper HDU type */ colptr = (fptr->Fptr)->tableptr; /* set pointer to the first column */ colptr += (colnum - 1); /* increment to the correct column */ colptr->tnull = nulvalue; return(*status); } /*--------------------------------------------------------------------------*/ int ffsnul(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - column number to apply nulvalue to */ char *nulstring, /* I - null pixel value: value of TNULLn */ int *status) /* IO - error status */ /* Define the string used to represent undefined pixels in the ASCII TABLE column. This routine overrides the null value given by the TNULLn keyword if present. Note that this routine does not write or modify the TNULLn keyword, but instead only modifies the value temporarily in the internal buffer. Thus, a subsequent call to the ffrdef routine will reset the null value back to the TNULLn keyword value (or not defined if the keyword is not present). */ { tcolumn *colptr; int hdutype; if (*status > 0) return(*status); if (ffghdt(fptr, &hdutype, status) > 0) /* get HDU type */ return(*status); if (hdutype != ASCII_TBL) return(*status = NOT_ATABLE); /* not proper HDU type */ colptr = (fptr->Fptr)->tableptr; /* set pointer to the first column */ colptr += (colnum - 1); /* increment to the correct column */ colptr->strnull[0] = '\0'; strncat(colptr->strnull, nulstring, 19); /* limit string to 19 chars */ return(*status); } healpy-1.8.1/cfitsio/putcolsb.c0000654000175000017530000010404112272000775017054 0ustar zoncaplanck00000000000000/* This file, putcolsb.c, contains routines that write data elements to */ /* a FITS image or table with signed char (signed byte) datatype. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffpprsb( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to write(1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ signed char *array, /* I - array of values that are written */ int *status) /* IO - error status */ /* Write an array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long row; signed char nullvalue; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_write_compressed_pixels(fptr, TSBYTE, firstelem, nelem, 0, array, &nullvalue, status); return(*status); } row=maxvalue(1,group); ffpclsb(fptr, 2, row, firstelem, nelem, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffppnsb( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to write(1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ signed char *array, /* I - array of values that are written */ signed char nulval, /* I - undefined pixel value */ int *status) /* IO - error status */ /* Write an array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). Any array values that are equal to the value of nulval will be replaced with the null pixel value that is appropriate for this column. */ { long row; signed char nullvalue; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ nullvalue = nulval; /* set local variable */ fits_write_compressed_pixels(fptr, TSBYTE, firstelem, nelem, 1, array, &nullvalue, status); return(*status); } row=maxvalue(1,group); ffpcnsb(fptr, 2, row, firstelem, nelem, array, nulval, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffp2dsb(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ signed char *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write an entire 2-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { /* call the 3D writing routine, with the 3rd dimension = 1 */ ffp3dsb(fptr, group, ncols, naxis2, naxis1, naxis2, 1, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffp3dsb(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG nrows, /* I - number of rows in each plane of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ LONGLONG naxis3, /* I - FITS image NAXIS3 value */ signed char *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write an entire 3-D cube of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long tablerow, ii, jj; long fpixel[3]= {1,1,1}, lpixel[3]; LONGLONG nfits, narray; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ lpixel[0] = (long) ncols; lpixel[1] = (long) nrows; lpixel[2] = (long) naxis3; fits_write_compressed_img(fptr, TSBYTE, fpixel, lpixel, 0, array, NULL, status); return(*status); } tablerow=maxvalue(1,group); if (ncols == naxis1 && nrows == naxis2) /* arrays have same size? */ { /* all the image pixels are contiguous, so write all at once */ ffpclsb(fptr, 2, tablerow, 1L, naxis1 * naxis2 * naxis3, array, status); return(*status); } if (ncols < naxis1 || nrows < naxis2) return(*status = BAD_DIMEN); nfits = 1; /* next pixel in FITS image to write to */ narray = 0; /* next pixel in input array to be written */ /* loop over naxis3 planes in the data cube */ for (jj = 0; jj < naxis3; jj++) { /* loop over the naxis2 rows in the FITS image, */ /* writing naxis1 pixels to each row */ for (ii = 0; ii < naxis2; ii++) { if (ffpclsb(fptr, 2, tablerow, nfits, naxis1,&array[narray],status) > 0) return(*status); nfits += naxis1; narray += ncols; } narray += (nrows - naxis2) * ncols; } return(*status); } /*--------------------------------------------------------------------------*/ int ffpsssb(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ long naxis, /* I - number of data axes in array */ long *naxes, /* I - size of each FITS axis */ long *fpixel, /* I - 1st pixel in each axis to write (1=1st) */ long *lpixel, /* I - last pixel in each axis to write */ signed char *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write a subsection of pixels to the primary array or image. A subsection is defined to be any contiguous rectangular array of pixels within the n-dimensional FITS data file. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long tablerow; LONGLONG fpix[7], dimen[7], astart, pstart; LONGLONG off2, off3, off4, off5, off6, off7; LONGLONG st10, st20, st30, st40, st50, st60, st70; LONGLONG st1, st2, st3, st4, st5, st6, st7; long ii, i1, i2, i3, i4, i5, i6, i7, irange[7]; if (*status > 0) return(*status); if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_write_compressed_img(fptr, TSBYTE, fpixel, lpixel, 0, array, NULL, status); return(*status); } if (naxis < 1 || naxis > 7) return(*status = BAD_DIMEN); tablerow=maxvalue(1,group); /* calculate the size and number of loops to perform in each dimension */ for (ii = 0; ii < 7; ii++) { fpix[ii]=1; irange[ii]=1; dimen[ii]=1; } for (ii = 0; ii < naxis; ii++) { fpix[ii]=fpixel[ii]; irange[ii]=lpixel[ii]-fpixel[ii]+1; dimen[ii]=naxes[ii]; } i1=irange[0]; /* compute the pixel offset between each dimension */ off2 = dimen[0]; off3 = off2 * dimen[1]; off4 = off3 * dimen[2]; off5 = off4 * dimen[3]; off6 = off5 * dimen[4]; off7 = off6 * dimen[5]; st10 = fpix[0]; st20 = (fpix[1] - 1) * off2; st30 = (fpix[2] - 1) * off3; st40 = (fpix[3] - 1) * off4; st50 = (fpix[4] - 1) * off5; st60 = (fpix[5] - 1) * off6; st70 = (fpix[6] - 1) * off7; /* store the initial offset in each dimension */ st1 = st10; st2 = st20; st3 = st30; st4 = st40; st5 = st50; st6 = st60; st7 = st70; astart = 0; for (i7 = 0; i7 < irange[6]; i7++) { for (i6 = 0; i6 < irange[5]; i6++) { for (i5 = 0; i5 < irange[4]; i5++) { for (i4 = 0; i4 < irange[3]; i4++) { for (i3 = 0; i3 < irange[2]; i3++) { pstart = st1 + st2 + st3 + st4 + st5 + st6 + st7; for (i2 = 0; i2 < irange[1]; i2++) { if (ffpclsb(fptr, 2, tablerow, pstart, i1, &array[astart], status) > 0) return(*status); astart += i1; pstart += off2; } st2 = st20; st3 = st3+off3; } st3 = st30; st4 = st4+off4; } st4 = st40; st5 = st5+off5; } st5 = st50; st6 = st6+off6; } st6 = st60; st7 = st7+off7; } return(*status); } /*--------------------------------------------------------------------------*/ int ffpgpsb( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ long firstelem, /* I - first vector element to write(1 = 1st) */ long nelem, /* I - number of values to write */ signed char *array, /* I - array of values that are written */ int *status) /* IO - error status */ /* Write an array of group parameters to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long row; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffpclsb(fptr, 1L, row, firstelem, nelem, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffpclsb( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ signed char *array, /* I - array of values to write */ int *status) /* IO - error status */ /* Write an array of values to a column in the current FITS HDU. The column number may refer to a real column in an ASCII or binary table, or it may refer to a virtual column in a 1 or more grouped FITS primary array. FITSIO treats a primary array as a binary table with 2 vector columns: the first column contains the group parameters (often with length = 0) and the second column contains the array of image pixels. Each row of the table represents a group in the case of multigroup FITS images. The input array of values will be converted to the datatype of the column and will be inverse-scaled by the FITS TSCALn and TZEROn values if necessary. */ { int tcode, maxelem, hdutype; long twidth, incre; long ntodo; LONGLONG repeat, startpos, elemnum, wrtptr, rowlen, rownum, remain, next, tnull; double scale, zero; char tform[20], cform[20]; char message[FLEN_ERRMSG]; char snull[20]; /* the FITS null value */ double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */ void *buffer; if (*status > 0) /* inherit input status value if > 0 */ return(*status); buffer = cbuff; /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if (ffgcprll( fptr, colnum, firstrow, firstelem, nelem, 1, &scale, &zero, tform, &twidth, &tcode, &maxelem, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0) return(*status); if (tcode == TSTRING) ffcfmt(tform, cform); /* derive C format for writing strings */ /*---------------------------------------------------------------------*/ /* Now write the pixels to the FITS column. */ /* First call the ffXXfYY routine to (1) convert the datatype */ /* if necessary, and (2) scale the values by the FITS TSCALn and */ /* TZEROn linear scaling parameters into a temporary buffer. */ /*---------------------------------------------------------------------*/ remain = nelem; /* remaining number of values to write */ next = 0; /* next element in array to be written */ rownum = 0; /* row number, relative to firstrow */ while (remain) { /* limit the number of pixels to process a one time to the number that will fit in the buffer space or to the number of pixels that remain in the current vector, which ever is smaller. */ ntodo = (long) minvalue(remain, maxelem); ntodo = (long) minvalue(ntodo, (repeat - elemnum)); wrtptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * incre); ffmbyt(fptr, wrtptr, IGNORE_EOF, status); /* move to write position */ switch (tcode) { case (TBYTE): /* convert the raw data before writing to FITS file */ ffs1fi1(&array[next], ntodo, scale, zero, (unsigned char *) buffer, status); ffpi1b(fptr, ntodo, incre, (unsigned char *) buffer, status); break; case (TLONGLONG): ffs1fi8(&array[next], ntodo, scale, zero, (LONGLONG *) buffer, status); ffpi8b(fptr, ntodo, incre, (long *) buffer, status); break; case (TSHORT): ffs1fi2(&array[next], ntodo, scale, zero, (short *) buffer, status); ffpi2b(fptr, ntodo, incre, (short *) buffer, status); break; case (TLONG): ffs1fi4(&array[next], ntodo, scale, zero, (INT32BIT *) buffer, status); ffpi4b(fptr, ntodo, incre, (INT32BIT *) buffer, status); break; case (TFLOAT): ffs1fr4(&array[next], ntodo, scale, zero, (float *) buffer, status); ffpr4b(fptr, ntodo, incre, (float *) buffer, status); break; case (TDOUBLE): ffs1fr8(&array[next], ntodo, scale, zero, (double *) buffer, status); ffpr8b(fptr, ntodo, incre, (double *) buffer, status); break; case (TSTRING): /* numerical column in an ASCII table */ if (strchr(tform,'A')) { /* write raw input bytes without conversion */ /* This case is a hack to let users write a stream */ /* of bytes directly to the 'A' format column */ if (incre == twidth) ffpbyt(fptr, ntodo, &array[next], status); else ffpbytoff(fptr, twidth, ntodo/twidth, incre - twidth, &array[next], status); break; } else if (cform[1] != 's') /* "%s" format is a string */ { ffs1fstr(&array[next], ntodo, scale, zero, cform, twidth, (char *) buffer, status); if (incre == twidth) /* contiguous bytes */ ffpbyt(fptr, ntodo * twidth, buffer, status); else ffpbytoff(fptr, twidth, ntodo, incre - twidth, buffer, status); break; } /* can't write to string column, so fall thru to default: */ default: /* error trap */ sprintf(message, "Cannot write numbers to column %d which has format %s", colnum,tform); ffpmsg(message); if (hdutype == ASCII_TBL) return(*status = BAD_ATABLE_FORMAT); else return(*status = BAD_BTABLE_FORMAT); } /* End of switch block */ /*-------------------------*/ /* Check for fatal error */ /*-------------------------*/ if (*status > 0) /* test for error during previous write operation */ { sprintf(message, "Error writing elements %.0f thru %.0f of input data array (ffpclsb).", (double) (next+1), (double) (next+ntodo)); ffpmsg(message); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain -= ntodo; if (remain) { next += ntodo; elemnum += ntodo; if (elemnum == repeat) /* completed a row; start on next row */ { elemnum = 0; rownum++; } } } /* End of main while Loop */ /*--------------------------------*/ /* check for numerical overflow */ /*--------------------------------*/ if (*status == OVERFLOW_ERR) { ffpmsg( "Numerical overflow during type conversion while writing FITS data."); *status = NUM_OVERFLOW; } return(*status); } /*--------------------------------------------------------------------------*/ int ffpcnsb( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ signed char *array, /* I - array of values to write */ signed char nulvalue, /* I - flag for undefined pixels */ int *status) /* IO - error status */ /* Write an array of elements to the specified column of a table. Any input pixels equal to the value of nulvalue will be replaced by the appropriate null value in the output FITS file. The input array of values will be converted to the datatype of the column and will be inverse-scaled by the FITS TSCALn and TZEROn values if necessary */ { tcolumn *colptr; LONGLONG ngood = 0, nbad = 0, ii; LONGLONG repeat, first, fstelm, fstrow; int tcode, overflow = 0; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) { if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); } colptr = (fptr->Fptr)->tableptr; /* point to first column */ colptr += (colnum - 1); /* offset to correct column structure */ tcode = colptr->tdatatype; if (tcode > 0) repeat = colptr->trepeat; /* repeat count for this column */ else repeat = firstelem -1 + nelem; /* variable length arrays */ /* if variable length array, first write the whole input vector, then go back and fill in the nulls */ if (tcode < 0) { if (ffpclsb(fptr, colnum, firstrow, firstelem, nelem, array, status) > 0) { if (*status == NUM_OVERFLOW) { /* ignore overflows, which are possibly the null pixel values */ /* overflow = 1; */ *status = 0; } else { return(*status); } } } /* absolute element number in the column */ first = (firstrow - 1) * repeat + firstelem; for (ii = 0; ii < nelem; ii++) { if (array[ii] != nulvalue) /* is this a good pixel? */ { if (nbad) /* write previous string of bad pixels */ { fstelm = ii - nbad + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (ffpclu(fptr, colnum, fstrow, fstelm, nbad, status) > 0) return(*status); nbad=0; } ngood = ngood + 1; /* the consecutive number of good pixels */ } else { if (ngood) /* write previous string of good pixels */ { fstelm = ii - ngood + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (tcode > 0) { /* variable length arrays have already been written */ if (ffpclsb(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status) > 0) { if (*status == NUM_OVERFLOW) { overflow = 1; *status = 0; } else { return(*status); } } } ngood=0; } nbad = nbad + 1; /* the consecutive number of bad pixels */ } } /* finished loop; now just write the last set of pixels */ if (ngood) /* write last string of good pixels */ { fstelm = ii - ngood + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (tcode > 0) { /* variable length arrays have already been written */ ffpclsb(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status); } } else if (nbad) /* write last string of bad pixels */ { fstelm = ii - nbad + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ ffpclu(fptr, colnum, fstrow, fstelm, nbad, status); } if (*status <= 0) { if (overflow) { *status = NUM_OVERFLOW; } } return(*status); } /*--------------------------------------------------------------------------*/ int ffs1fi1(signed char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ unsigned char *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required */ { long ii; double dvalue; if (scale == 1. && zero == -128.) { /* Instead of adding 128, it is more efficient */ /* to just flip the sign bit with the XOR operator */ for (ii = 0; ii < ntodo; ii++) output[ii] = ( *(unsigned char *) &input[ii] ) ^ 0x80; } else if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < 0) { *status = OVERFLOW_ERR; output[ii] = 0; } else output[ii] = (unsigned char) input[ii]; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = ( ((double) input[ii]) - zero) / scale; if (dvalue < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) (dvalue + .5); } } return(*status); } /*--------------------------------------------------------------------------*/ int ffs1fi2(signed char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ short *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = input[ii]; /* just copy input to output */ } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (((double) input[ii]) - zero) / scale; if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else { if (dvalue >= 0) output[ii] = (short) (dvalue + .5); else output[ii] = (short) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffs1fi4(signed char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ INT32BIT *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = (INT32BIT) input[ii]; /* copy input to output */ } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (((double) input[ii]) - zero) / scale; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT32_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT32_MAX; } else { if (dvalue >= 0) output[ii] = (INT32BIT) (dvalue + .5); else output[ii] = (INT32BIT) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffs1fi8(signed char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ LONGLONG *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = input[ii]; } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (dvalue > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else { if (dvalue >= 0) output[ii] = (LONGLONG) (dvalue + .5); else output[ii] = (LONGLONG) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffs1fr4(signed char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ float *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = (float) input[ii]; } else { for (ii = 0; ii < ntodo; ii++) output[ii] = (float) (( ( (double) input[ii] ) - zero) / scale); } return(*status); } /*--------------------------------------------------------------------------*/ int ffs1fr8(signed char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ double *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = (double) input[ii]; } else { for (ii = 0; ii < ntodo; ii++) output[ii] = ( ( (double) input[ii] ) - zero) / scale; } return(*status); } /*--------------------------------------------------------------------------*/ int ffs1fstr(signed char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ char *cform, /* I - format for output string values */ long twidth, /* I - width of each field, in chars */ char *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do scaling if required. */ { long ii; double dvalue; char *cptr; cptr = output; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { sprintf(output, cform, (double) input[ii]); output += twidth; if (*output) /* if this char != \0, then overflow occurred */ *status = OVERFLOW_ERR; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = ((double) input[ii] - zero) / scale; sprintf(output, cform, dvalue); output += twidth; if (*output) /* if this char != \0, then overflow occurred */ *status = OVERFLOW_ERR; } } /* replace any commas with periods (e.g., in French locale) */ while ((cptr = strchr(cptr, ','))) *cptr = '.'; return(*status); } healpy-1.8.1/cfitsio/putcoll.c0000654000175000017530000003264512272000775016715 0ustar zoncaplanck00000000000000/* This file, putcoll.c, contains routines that write data elements to */ /* a FITS image or table, with logical datatype. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffpcll( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ char *array, /* I - array of values to write */ int *status) /* IO - error status */ /* Write an array of logical values to a column in the current FITS HDU. */ { int tcode, maxelem, hdutype; long twidth, incre; LONGLONG repeat, startpos, elemnum, wrtptr, rowlen, rownum, remain, next, tnull; double scale, zero; char tform[20], ctrue = 'T', cfalse = 'F'; char message[FLEN_ERRMSG]; char snull[20]; /* the FITS null value */ if (*status > 0) /* inherit input status value if > 0 */ return(*status); /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if (ffgcprll( fptr, colnum, firstrow, firstelem, nelem, 1, &scale, &zero, tform, &twidth, &tcode, &maxelem, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0) return(*status); if (tcode != TLOGICAL) return(*status = NOT_LOGICAL_COL); /*---------------------------------------------------------------------*/ /* Now write the logical values one at a time to the FITS column. */ /*---------------------------------------------------------------------*/ remain = nelem; /* remaining number of values to write */ next = 0; /* next element in array to be written */ rownum = 0; /* row number, relative to firstrow */ while (remain) { wrtptr = startpos + (rowlen * rownum) + (elemnum * incre); ffmbyt(fptr, wrtptr, IGNORE_EOF, status); /* move to write position */ if (array[next]) ffpbyt(fptr, 1, &ctrue, status); else ffpbyt(fptr, 1, &cfalse, status); if (*status > 0) /* test for error during previous write operation */ { sprintf(message, "Error writing element %.0f of input array of logicals (ffpcll).", (double) (next+1)); ffpmsg(message); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain--; if (remain) { next++; elemnum++; if (elemnum == repeat) /* completed a row; start on next row */ { elemnum = 0; rownum++; } } } /* End of main while Loop */ return(*status); } /*--------------------------------------------------------------------------*/ int ffpcnl( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ char *array, /* I - array of values to write */ char nulvalue, /* I - array flagging undefined pixels if true */ int *status) /* IO - error status */ /* Write an array of elements to the specified column of a table. Any input pixels flagged as null will be replaced by the appropriate null value in the output FITS file. */ { tcolumn *colptr; LONGLONG ngood = 0, nbad = 0, ii; LONGLONG repeat, first, fstelm, fstrow; int tcode; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) { if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); } colptr = (fptr->Fptr)->tableptr; /* point to first column */ colptr += (colnum - 1); /* offset to correct column structure */ tcode = colptr->tdatatype; if (tcode > 0) repeat = colptr->trepeat; /* repeat count for this column */ else repeat = firstelem -1 + nelem; /* variable length arrays */ /* first write the whole input vector, then go back and fill in the nulls */ if (ffpcll(fptr, colnum, firstrow, firstelem, nelem, array, status) > 0) return(*status); /* absolute element number in the column */ first = (firstrow - 1) * repeat + firstelem; for (ii = 0; ii < nelem; ii++) { if (array[ii] != nulvalue) /* is this a good pixel? */ { if (nbad) /* write previous string of bad pixels */ { fstelm = ii - nbad + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (ffpclu(fptr, colnum, fstrow, fstelm, nbad, status) > 0) return(*status); nbad=0; } ngood = ngood +1; /* the consecutive number of good pixels */ } else { if (ngood) /* write previous string of good pixels */ { fstelm = ii - ngood + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ /* good values have already been written if (ffpcll(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status) > 0) return(*status); */ ngood=0; } nbad = nbad +1; /* the consecutive number of bad pixels */ } } /* finished loop; now just write the last set of pixels */ if (ngood) /* write last string of good pixels */ { fstelm = ii - ngood + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ /* these have already been written ffpcll(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status); */ } else if (nbad) /* write last string of bad pixels */ { fstelm = ii - nbad + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ ffpclu(fptr, colnum, fstrow, fstelm, nbad, status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffpclx( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG frow, /* I - first row to write (1 = 1st row) */ long fbit, /* I - first bit to write (1 = 1st) */ long nbit, /* I - number of bits to write */ char *larray, /* I - array of logicals corresponding to bits */ int *status) /* IO - error status */ /* write an array of logical values to a specified bit or byte column of the binary table. If larray is TRUE, then the corresponding bit is set to 1, otherwise it is set to 0. The binary table column being written to must have datatype 'B' or 'X'. */ { LONGLONG offset, bstart, repeat, rowlen, elemnum, rstart, estart, tnull; long fbyte, lbyte, nbyte, bitloc, ndone; long ii, twidth, incre; int tcode, descrp, maxelem, hdutype; double dummyd; char tform[12], snull[12]; unsigned char cbuff; static unsigned char onbit[8] = {128, 64, 32, 16, 8, 4, 2, 1}; static unsigned char offbit[8] = {127, 191, 223, 239, 247, 251, 253, 254}; tcolumn *colptr; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* check input parameters */ if (nbit < 1) return(*status); else if (frow < 1) return(*status = BAD_ROW_NUM); else if (fbit < 1) return(*status = BAD_ELEM_NUM); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); /* rescan header if data structure is undefined */ else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) return(*status); fbyte = (fbit + 7) / 8; lbyte = (fbit + nbit + 6) / 8; nbyte = lbyte - fbyte +1; /* Save the current heapsize; ffgcprll will increment the value if */ /* we are writing to a variable length column. */ offset = (fptr->Fptr)->heapsize; /* call ffgcprll in case we are writing beyond the current end of */ /* the table; it will allocate more space and shift any following */ /* HDU's. Otherwise, we have little use for most of the returned */ /* parameters, therefore just use dummy parameters. */ if (ffgcprll( fptr, colnum, frow, fbyte, nbyte, 1, &dummyd, &dummyd, tform, &twidth, &tcode, &maxelem, &bstart, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0) return(*status); bitloc = fbit - 1 - ((fbit - 1) / 8 * 8); ndone = 0; rstart = frow - 1; estart = fbyte - 1; colptr = (fptr->Fptr)->tableptr; /* point to first column */ colptr += (colnum - 1); /* offset to correct column structure */ tcode = colptr->tdatatype; if (abs(tcode) > TBYTE) return(*status = NOT_LOGICAL_COL); /* not correct datatype column */ if (tcode > 0) { descrp = FALSE; /* not a variable length descriptor column */ repeat = colptr->trepeat; if (tcode == TBIT) repeat = (repeat + 7) / 8; /* convert from bits to bytes */ if (fbyte > repeat) return(*status = BAD_ELEM_NUM); /* calc the i/o pointer location to start of sequence of pixels */ bstart = (fptr->Fptr)->datastart + ((fptr->Fptr)->rowlength * rstart) + colptr->tbcol + estart; } else { descrp = TRUE; /* a variable length descriptor column */ /* only bit arrays (tform = 'X') are supported for variable */ /* length arrays. REPEAT is the number of BITS in the array. */ repeat = fbit + nbit -1; /* write the number of elements and the starting offset. */ /* Note: ffgcprll previous wrote the descripter, but with the */ /* wrong repeat value (gave bytes instead of bits). */ if (tcode == -TBIT) ffpdes(fptr, colnum, frow, (long) repeat, offset, status); /* Calc the i/o pointer location to start of sequence of pixels. */ /* ffgcprll has already calculated a value for bstart that */ /* points to the first element of the vector; we just have to */ /* increment it to point to the first element we want to write to. */ /* Note: ffgcprll also already updated the size of the heap, so we */ /* don't have to do that again here. */ bstart += estart; } /* move the i/o pointer to the start of the pixel sequence */ ffmbyt(fptr, bstart, IGNORE_EOF, status); /* read the next byte (we may only be modifying some of the bits) */ while (1) { if (ffgbyt(fptr, 1, &cbuff, status) == END_OF_FILE) { /* hit end of file trying to read the byte, so just set byte = 0 */ *status = 0; cbuff = 0; } /* move back, to be able to overwrite the byte */ ffmbyt(fptr, bstart, IGNORE_EOF, status); for (ii = bitloc; (ii < 8) && (ndone < nbit); ii++, ndone++) { if(larray[ndone]) cbuff = cbuff | onbit[ii]; else cbuff = cbuff & offbit[ii]; } ffpbyt(fptr, 1, &cbuff, status); /* write the modified byte */ if (ndone == nbit) /* finished all the bits */ return(*status); /* not done, so get the next byte */ bstart++; if (!descrp) { estart++; if (estart == repeat) { /* move the i/o pointer to the next row of pixels */ estart = 0; rstart = rstart + 1; bstart = (fptr->Fptr)->datastart + ((fptr->Fptr)->rowlength * rstart) + colptr->tbcol; ffmbyt(fptr, bstart, IGNORE_EOF, status); } } bitloc = 0; } } healpy-1.8.1/cfitsio/configure0000755000175000017530000060057712272000775017002 0ustar zoncaplanck00000000000000#! /bin/sh # Guess values for system-dependent variables and create Makefiles. # Generated by GNU Autoconf 2.68. # # # Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001, # 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010 Free Software # Foundation, Inc. # # # This configure script is free software; the Free Software Foundation # gives unlimited permission to copy, distribute and modify it. ## -------------------- ## ## M4sh Initialization. ## ## -------------------- ## # Be more Bourne compatible DUALCASE=1; export DUALCASE # for MKS sh if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then : emulate sh NULLCMD=: # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which # is contrary to our usage. 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define gzrewind z_gzrewind # define gzseek z_gzseek # define gzseek64 z_gzseek64 # define gzsetparams z_gzsetparams # define gztell z_gztell # define gztell64 z_gztell64 # define gzungetc z_gzungetc # define gzwrite z_gzwrite # define inflate z_inflate # define inflateBack z_inflateBack # define inflateBackEnd z_inflateBackEnd # define inflateBackInit_ z_inflateBackInit_ # define inflateCopy z_inflateCopy # define inflateEnd z_inflateEnd # define inflateGetHeader z_inflateGetHeader # define inflateInit2_ z_inflateInit2_ # define inflateInit_ z_inflateInit_ # define inflateMark z_inflateMark # define inflatePrime z_inflatePrime # define inflateReset z_inflateReset # define inflateReset2 z_inflateReset2 # define inflateSetDictionary z_inflateSetDictionary # define inflateSync z_inflateSync # define inflateSyncPoint z_inflateSyncPoint # define inflateUndermine z_inflateUndermine # define inflate_copyright z_inflate_copyright # define inflate_fast z_inflate_fast # define inflate_table z_inflate_table # define uncompress z_uncompress # define zError z_zError # define zcalloc z_zcalloc # define zcfree z_zcfree # define zlibCompileFlags z_zlibCompileFlags # define zlibVersion z_zlibVersion /* all zlib typedefs in zlib.h and zconf.h */ # define Byte z_Byte # define Bytef z_Bytef # define alloc_func z_alloc_func # define charf z_charf # define free_func z_free_func # define gzFile z_gzFile # define gz_header z_gz_header # define gz_headerp z_gz_headerp # define in_func z_in_func # define intf z_intf # define out_func z_out_func # define uInt z_uInt # define uIntf z_uIntf # define uLong z_uLong # define uLongf z_uLongf # define voidp z_voidp # define voidpc z_voidpc # define voidpf z_voidpf /* all zlib structs in zlib.h and zconf.h */ # define gz_header_s z_gz_header_s # define internal_state z_internal_state #endif #if defined(__MSDOS__) && !defined(MSDOS) # define MSDOS #endif #if (defined(OS_2) || defined(__OS2__)) && !defined(OS2) # define OS2 #endif #if defined(_WINDOWS) && !defined(WINDOWS) # define WINDOWS #endif #if defined(_WIN32) || defined(_WIN32_WCE) || defined(__WIN32__) # ifndef WIN32 # define WIN32 # endif #endif #if (defined(MSDOS) || defined(OS2) || defined(WINDOWS)) && !defined(WIN32) # if !defined(__GNUC__) && !defined(__FLAT__) && !defined(__386__) # ifndef SYS16BIT # define SYS16BIT # endif # endif #endif /* * Compile with -DMAXSEG_64K if the alloc function cannot allocate more * than 64k bytes at a time (needed on systems with 16-bit int). */ #ifdef SYS16BIT # define MAXSEG_64K #endif #ifdef MSDOS # define UNALIGNED_OK #endif #ifdef __STDC_VERSION__ # ifndef STDC # define STDC # endif # if __STDC_VERSION__ >= 199901L # ifndef STDC99 # define STDC99 # endif # endif #endif #if !defined(STDC) && (defined(__STDC__) || defined(__cplusplus)) # define STDC #endif #if !defined(STDC) && (defined(__GNUC__) || defined(__BORLANDC__)) # define STDC #endif #if !defined(STDC) && (defined(MSDOS) || defined(WINDOWS) || defined(WIN32)) # define STDC #endif #if !defined(STDC) && (defined(OS2) || defined(__HOS_AIX__)) # define STDC #endif #if defined(__OS400__) && !defined(STDC) /* iSeries (formerly AS/400). */ # define STDC #endif #ifndef STDC # ifndef const /* cannot use !defined(STDC) && !defined(const) on Mac */ # define const /* note: need a more gentle solution here */ # endif #endif /* Some Mac compilers merge all .h files incorrectly: */ #if defined(__MWERKS__)||defined(applec)||defined(THINK_C)||defined(__SC__) # define NO_DUMMY_DECL #endif /* Maximum value for memLevel in deflateInit2 */ #ifndef MAX_MEM_LEVEL # ifdef MAXSEG_64K # define MAX_MEM_LEVEL 8 # else # define MAX_MEM_LEVEL 9 # endif #endif /* Maximum value for windowBits in deflateInit2 and inflateInit2. * WARNING: reducing MAX_WBITS makes minigzip unable to extract .gz files * created by gzip. (Files created by minigzip can still be extracted by * gzip.) */ #ifndef MAX_WBITS # define MAX_WBITS 15 /* 32K LZ77 window */ #endif /* The memory requirements for deflate are (in bytes): (1 << (windowBits+2)) + (1 << (memLevel+9)) that is: 128K for windowBits=15 + 128K for memLevel = 8 (default values) plus a few kilobytes for small objects. For example, if you want to reduce the default memory requirements from 256K to 128K, compile with make CFLAGS="-O -DMAX_WBITS=14 -DMAX_MEM_LEVEL=7" Of course this will generally degrade compression (there's no free lunch). 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If you don't need the mixed model, * just define FAR to be empty. */ #ifdef SYS16BIT # if defined(M_I86SM) || defined(M_I86MM) /* MSC small or medium model */ # define SMALL_MEDIUM # ifdef _MSC_VER # define FAR _far # else # define FAR far # endif # endif # if (defined(__SMALL__) || defined(__MEDIUM__)) /* Turbo C small or medium model */ # define SMALL_MEDIUM # ifdef __BORLANDC__ # define FAR _far # else # define FAR far # endif # endif #endif #if defined(WINDOWS) || defined(WIN32) /* If building or using zlib as a DLL, define ZLIB_DLL. * This is not mandatory, but it offers a little performance increase. */ # ifdef ZLIB_DLL # if defined(WIN32) && (!defined(__BORLANDC__) || (__BORLANDC__ >= 0x500)) # ifdef ZLIB_INTERNAL # define ZEXTERN extern __declspec(dllexport) # else # define ZEXTERN extern __declspec(dllimport) # endif # endif # endif /* ZLIB_DLL */ /* If building or using zlib with the WINAPI/WINAPIV calling convention, * define ZLIB_WINAPI. * Caution: the standard ZLIB1.DLL is NOT compiled using ZLIB_WINAPI. */ # ifdef ZLIB_WINAPI # ifdef FAR # undef FAR # endif # include /* No need for _export, use ZLIB.DEF instead. */ /* For complete Windows compatibility, use WINAPI, not __stdcall. */ # define ZEXPORT WINAPI # ifdef WIN32 # define ZEXPORTVA WINAPIV # else # define ZEXPORTVA FAR CDECL # endif # endif #endif #if defined (__BEOS__) # ifdef ZLIB_DLL # ifdef ZLIB_INTERNAL # define ZEXPORT __declspec(dllexport) # define ZEXPORTVA __declspec(dllexport) # else # define ZEXPORT __declspec(dllimport) # define ZEXPORTVA __declspec(dllimport) # endif # endif #endif #ifndef ZEXTERN # define ZEXTERN extern #endif #ifndef ZEXPORT # define ZEXPORT #endif #ifndef ZEXPORTVA # define ZEXPORTVA #endif #ifndef FAR # define FAR #endif #if !defined(__MACTYPES__) typedef unsigned char Byte; /* 8 bits */ #endif typedef unsigned int uInt; /* 16 bits or more */ typedef unsigned long uLong; /* 32 bits or more */ #ifdef SMALL_MEDIUM /* Borland C/C++ and some old MSC versions ignore FAR inside typedef */ # define Bytef Byte FAR #else typedef Byte FAR Bytef; #endif typedef char FAR charf; typedef int FAR intf; typedef uInt FAR uIntf; typedef uLong FAR uLongf; #ifdef STDC typedef void const *voidpc; typedef void FAR *voidpf; typedef void *voidp; #else typedef Byte const *voidpc; typedef Byte FAR *voidpf; typedef Byte *voidp; #endif #if !defined(MSDOS) && !defined(WINDOWS) && !defined(WIN32) # define Z_HAVE_UNISTD_H #endif #ifdef STDC # include /* for off_t */ #endif /* a little trick to accommodate both "#define _LARGEFILE64_SOURCE" and * "#define _LARGEFILE64_SOURCE 1" as requesting 64-bit operations, (even * though the former does not conform to the LFS document), but considering * both "#undef _LARGEFILE64_SOURCE" and "#define _LARGEFILE64_SOURCE 0" as * equivalently requesting no 64-bit operations */ #if -_LARGEFILE64_SOURCE - -1 == 1 # undef _LARGEFILE64_SOURCE #endif #if defined(Z_HAVE_UNISTD_H) || defined(_LARGEFILE64_SOURCE) # include /* for SEEK_* and off_t */ # ifdef VMS # include /* for off_t */ # endif # ifndef z_off_t # define z_off_t off_t # endif #endif #ifndef SEEK_SET # define SEEK_SET 0 /* Seek from beginning of file. */ # define SEEK_CUR 1 /* Seek from current position. */ # define SEEK_END 2 /* Set file pointer to EOF plus "offset" */ #endif #ifndef z_off_t # define z_off_t long #endif #if defined(_LARGEFILE64_SOURCE) && _LFS64_LARGEFILE-0 # define z_off64_t off64_t #else # define z_off64_t z_off_t #endif #if defined(__OS400__) # define NO_vsnprintf #endif #if defined(__MVS__) # define NO_vsnprintf #endif /* MVS linker does not support external names larger than 8 bytes */ #if defined(__MVS__) #pragma map(deflateInit_,"DEIN") #pragma map(deflateInit2_,"DEIN2") #pragma map(deflateEnd,"DEEND") #pragma map(deflateBound,"DEBND") #pragma map(inflateInit_,"ININ") #pragma map(inflateInit2_,"ININ2") #pragma map(inflateEnd,"INEND") #pragma map(inflateSync,"INSY") #pragma map(inflateSetDictionary,"INSEDI") #pragma map(compressBound,"CMBND") #pragma map(inflate_table,"INTABL") #pragma map(inflate_fast,"INFA") #pragma map(inflate_copyright,"INCOPY") #endif #endif /* ZCONF_H */ healpy-1.8.1/cfitsio/zlib/inflate.c0000654000175000017530000014661712272000775017622 0ustar zoncaplanck00000000000000/* inflate.c -- zlib decompression * Copyright (C) 1995-2010 Mark Adler * For conditions of distribution and use, see copyright notice in zlib.h */ /* * Change history: * * 1.2.beta0 24 Nov 2002 * - First version -- complete rewrite of inflate to simplify code, avoid * creation of window when not needed, minimize use of window when it is * needed, make inffast.c even faster, implement gzip decoding, and to * improve code readability and style over the previous zlib inflate code * * 1.2.beta1 25 Nov 2002 * - Use pointers for available input and output checking in inffast.c * - Remove input and output counters in inffast.c * - Change inffast.c entry and loop from avail_in >= 7 to >= 6 * - Remove unnecessary second byte pull from length extra in inffast.c * - Unroll direct copy to three copies per loop in inffast.c * * 1.2.beta2 4 Dec 2002 * - Change external routine names to reduce potential conflicts * - Correct filename to inffixed.h for fixed tables in inflate.c * - Make hbuf[] unsigned char to match parameter type in inflate.c * - Change strm->next_out[-state->offset] to *(strm->next_out - state->offset) * to avoid negation problem on Alphas (64 bit) in inflate.c * * 1.2.beta3 22 Dec 2002 * - Add comments on state->bits assertion in inffast.c * - Add comments on op field in inftrees.h * - Fix bug in reuse of allocated window after inflateReset() * - Remove bit fields--back to byte structure for speed * - Remove distance extra == 0 check in inflate_fast()--only helps for lengths * - Change post-increments to pre-increments in inflate_fast(), PPC biased? * - Add compile time option, POSTINC, to use post-increments instead (Intel?) * - Make MATCH copy in inflate() much faster for when inflate_fast() not used * - Use local copies of stream next and avail values, as well as local bit * buffer and bit count in inflate()--for speed when inflate_fast() not used * * 1.2.beta4 1 Jan 2003 * - Split ptr - 257 statements in inflate_table() to avoid compiler warnings * - Move a comment on output buffer sizes from inffast.c to inflate.c * - Add comments in inffast.c to introduce the inflate_fast() routine * - Rearrange window copies in inflate_fast() for speed and simplification * - Unroll last copy for window match in inflate_fast() * - Use local copies of window variables in inflate_fast() for speed * - Pull out common wnext == 0 case for speed in inflate_fast() * - Make op and len in inflate_fast() unsigned for consistency * - Add FAR to lcode and dcode declarations in inflate_fast() * - Simplified bad distance check in inflate_fast() * - Added inflateBackInit(), inflateBack(), and inflateBackEnd() in new * source file infback.c to provide a call-back interface to inflate for * programs like gzip and unzip -- uses window as output buffer to avoid * window copying * * 1.2.beta5 1 Jan 2003 * - Improved inflateBack() interface to allow the caller to provide initial * input in strm. * - Fixed stored blocks bug in inflateBack() * * 1.2.beta6 4 Jan 2003 * - Added comments in inffast.c on effectiveness of POSTINC * - Typecasting all around to reduce compiler warnings * - Changed loops from while (1) or do {} while (1) to for (;;), again to * make compilers happy * - Changed type of window in inflateBackInit() to unsigned char * * * 1.2.beta7 27 Jan 2003 * - Changed many types to unsigned or unsigned short to avoid warnings * - Added inflateCopy() function * * 1.2.0 9 Mar 2003 * - Changed inflateBack() interface to provide separate opaque descriptors * for the in() and out() functions * - Changed inflateBack() argument and in_func typedef to swap the length * and buffer address return values for the input function * - Check next_in and next_out for Z_NULL on entry to inflate() * * The history for versions after 1.2.0 are in ChangeLog in zlib distribution. */ #include "zutil.h" #include "inftrees.h" #include "inflate.h" #include "inffast.h" #ifdef MAKEFIXED # ifndef BUILDFIXED # define BUILDFIXED # endif #endif /* function prototypes */ local void fixedtables OF((struct inflate_state FAR *state)); local int updatewindow OF((z_streamp strm, unsigned out)); #ifdef BUILDFIXED void makefixed OF((void)); #endif local unsigned syncsearch OF((unsigned FAR *have, unsigned char FAR *buf, unsigned len)); int ZEXPORT inflateReset(strm) z_streamp strm; { struct inflate_state FAR *state; if (strm == Z_NULL || strm->state == Z_NULL) return Z_STREAM_ERROR; state = (struct inflate_state FAR *)strm->state; strm->total_in = strm->total_out = state->total = 0; strm->msg = Z_NULL; strm->adler = 1; /* to support ill-conceived Java test suite */ state->mode = HEAD; state->last = 0; state->havedict = 0; state->dmax = 32768U; state->head = Z_NULL; state->wsize = 0; state->whave = 0; state->wnext = 0; state->hold = 0; state->bits = 0; state->lencode = state->distcode = state->next = state->codes; state->sane = 1; state->back = -1; Tracev((stderr, "inflate: reset\n")); return Z_OK; } int ZEXPORT inflateReset2(strm, windowBits) z_streamp strm; int windowBits; { int wrap; struct inflate_state FAR *state; /* get the state */ if (strm == Z_NULL || strm->state == Z_NULL) return Z_STREAM_ERROR; state = (struct inflate_state FAR *)strm->state; /* extract wrap request from windowBits parameter */ if (windowBits < 0) { wrap = 0; windowBits = -windowBits; } else { wrap = (windowBits >> 4) + 1; #ifdef GUNZIP if (windowBits < 48) windowBits &= 15; #endif } /* set number of window bits, free window if different */ if (windowBits && (windowBits < 8 || windowBits > 15)) return Z_STREAM_ERROR; if (state->window != Z_NULL && state->wbits != (unsigned)windowBits) { ZFREE(strm, state->window); state->window = Z_NULL; } /* update state and reset the rest of it */ state->wrap = wrap; state->wbits = (unsigned)windowBits; return inflateReset(strm); } int ZEXPORT inflateInit2_(strm, windowBits, version, stream_size) z_streamp strm; int windowBits; const char *version; int stream_size; { int ret; struct inflate_state FAR *state; if (version == Z_NULL || version[0] != ZLIB_VERSION[0] || stream_size != (int)(sizeof(z_stream))) return Z_VERSION_ERROR; if (strm == Z_NULL) return Z_STREAM_ERROR; strm->msg = Z_NULL; /* in case we return an error */ if (strm->zalloc == (alloc_func)0) { strm->zalloc = zcalloc; strm->opaque = (voidpf)0; } if (strm->zfree == (free_func)0) strm->zfree = zcfree; state = (struct inflate_state FAR *) ZALLOC(strm, 1, sizeof(struct inflate_state)); if (state == Z_NULL) return Z_MEM_ERROR; Tracev((stderr, "inflate: allocated\n")); strm->state = (struct internal_state FAR *)state; state->window = Z_NULL; ret = inflateReset2(strm, windowBits); if (ret != Z_OK) { ZFREE(strm, state); strm->state = Z_NULL; } return ret; } int ZEXPORT inflateInit_(strm, version, stream_size) z_streamp strm; const char *version; int stream_size; { return inflateInit2_(strm, DEF_WBITS, version, stream_size); } int ZEXPORT inflatePrime(strm, bits, value) z_streamp strm; int bits; int value; { struct inflate_state FAR *state; if (strm == Z_NULL || strm->state == Z_NULL) return Z_STREAM_ERROR; state = (struct inflate_state FAR *)strm->state; if (bits < 0) { state->hold = 0; state->bits = 0; return Z_OK; } if (bits > 16 || state->bits + bits > 32) return Z_STREAM_ERROR; value &= (1L << bits) - 1; state->hold += value << state->bits; state->bits += bits; return Z_OK; } /* Return state with length and distance decoding tables and index sizes set to fixed code decoding. Normally this returns fixed tables from inffixed.h. If BUILDFIXED is defined, then instead this routine builds the tables the first time it's called, and returns those tables the first time and thereafter. This reduces the size of the code by about 2K bytes, in exchange for a little execution time. However, BUILDFIXED should not be used for threaded applications, since the rewriting of the tables and virgin may not be thread-safe. */ local void fixedtables(state) struct inflate_state FAR *state; { #ifdef BUILDFIXED static int virgin = 1; static code *lenfix, *distfix; static code fixed[544]; /* build fixed huffman tables if first call (may not be thread safe) */ if (virgin) { unsigned sym, bits; static code *next; /* literal/length table */ sym = 0; while (sym < 144) state->lens[sym++] = 8; while (sym < 256) state->lens[sym++] = 9; while (sym < 280) state->lens[sym++] = 7; while (sym < 288) state->lens[sym++] = 8; next = fixed; lenfix = next; bits = 9; inflate_table(LENS, state->lens, 288, &(next), &(bits), state->work); /* distance table */ sym = 0; while (sym < 32) state->lens[sym++] = 5; distfix = next; bits = 5; inflate_table(DISTS, state->lens, 32, &(next), &(bits), state->work); /* do this just once */ virgin = 0; } #else /* !BUILDFIXED */ # include "inffixed.h" #endif /* BUILDFIXED */ state->lencode = lenfix; state->lenbits = 9; state->distcode = distfix; state->distbits = 5; } #ifdef MAKEFIXED #include /* Write out the inffixed.h that is #include'd above. Defining MAKEFIXED also defines BUILDFIXED, so the tables are built on the fly. makefixed() writes those tables to stdout, which would be piped to inffixed.h. A small program can simply call makefixed to do this: void makefixed(void); int main(void) { makefixed(); return 0; } Then that can be linked with zlib built with MAKEFIXED defined and run: a.out > inffixed.h */ void makefixed() { unsigned low, size; struct inflate_state state; fixedtables(&state); puts(" /* inffixed.h -- table for decoding fixed codes"); puts(" * Generated automatically by makefixed()."); puts(" */"); puts(""); puts(" /* WARNING: this file should *not* be used by applications."); puts(" It is part of the implementation of this library and is"); puts(" subject to change. Applications should only use zlib.h."); puts(" */"); puts(""); size = 1U << 9; printf(" static const code lenfix[%u] = {", size); low = 0; for (;;) { if ((low % 7) == 0) printf("\n "); printf("{%u,%u,%d}", state.lencode[low].op, state.lencode[low].bits, state.lencode[low].val); if (++low == size) break; putchar(','); } puts("\n };"); size = 1U << 5; printf("\n static const code distfix[%u] = {", size); low = 0; for (;;) { if ((low % 6) == 0) printf("\n "); printf("{%u,%u,%d}", state.distcode[low].op, state.distcode[low].bits, state.distcode[low].val); if (++low == size) break; putchar(','); } puts("\n };"); } #endif /* MAKEFIXED */ /* Update the window with the last wsize (normally 32K) bytes written before returning. If window does not exist yet, create it. This is only called when a window is already in use, or when output has been written during this inflate call, but the end of the deflate stream has not been reached yet. It is also called to create a window for dictionary data when a dictionary is loaded. Providing output buffers larger than 32K to inflate() should provide a speed advantage, since only the last 32K of output is copied to the sliding window upon return from inflate(), and since all distances after the first 32K of output will fall in the output data, making match copies simpler and faster. The advantage may be dependent on the size of the processor's data caches. */ local int updatewindow(strm, out) z_streamp strm; unsigned out; { struct inflate_state FAR *state; unsigned copy, dist; state = (struct inflate_state FAR *)strm->state; /* if it hasn't been done already, allocate space for the window */ if (state->window == Z_NULL) { state->window = (unsigned char FAR *) ZALLOC(strm, 1U << state->wbits, sizeof(unsigned char)); if (state->window == Z_NULL) return 1; } /* if window not in use yet, initialize */ if (state->wsize == 0) { state->wsize = 1U << state->wbits; state->wnext = 0; state->whave = 0; } /* copy state->wsize or less output bytes into the circular window */ copy = out - strm->avail_out; if (copy >= state->wsize) { zmemcpy(state->window, strm->next_out - state->wsize, state->wsize); state->wnext = 0; state->whave = state->wsize; } else { dist = state->wsize - state->wnext; if (dist > copy) dist = copy; zmemcpy(state->window + state->wnext, strm->next_out - copy, dist); copy -= dist; if (copy) { zmemcpy(state->window, strm->next_out - copy, copy); state->wnext = copy; state->whave = state->wsize; } else { state->wnext += dist; if (state->wnext == state->wsize) state->wnext = 0; if (state->whave < state->wsize) state->whave += dist; } } return 0; } /* Macros for inflate(): */ /* check function to use adler32() for zlib or crc32() for gzip */ #ifdef GUNZIP # define UPDATE(check, buf, len) \ (state->flags ? crc32(check, buf, len) : adler32(check, buf, len)) #else # define UPDATE(check, buf, len) adler32(check, buf, len) #endif /* check macros for header crc */ #ifdef GUNZIP # define CRC2(check, word) \ do { \ hbuf[0] = (unsigned char)(word); \ hbuf[1] = (unsigned char)((word) >> 8); \ check = crc32(check, hbuf, 2); \ } while (0) # define CRC4(check, word) \ do { \ hbuf[0] = (unsigned char)(word); \ hbuf[1] = (unsigned char)((word) >> 8); \ hbuf[2] = (unsigned char)((word) >> 16); \ hbuf[3] = (unsigned char)((word) >> 24); \ check = crc32(check, hbuf, 4); \ } while (0) #endif /* Load registers with state in inflate() for speed */ #define LOAD() \ do { \ put = strm->next_out; \ left = strm->avail_out; \ next = strm->next_in; \ have = strm->avail_in; \ hold = state->hold; \ bits = state->bits; \ } while (0) /* Restore state from registers in inflate() */ #define RESTORE() \ do { \ strm->next_out = put; \ strm->avail_out = left; \ strm->next_in = next; \ strm->avail_in = have; \ state->hold = hold; \ state->bits = bits; \ } while (0) /* Clear the input bit accumulator */ #define INITBITS() \ do { \ hold = 0; \ bits = 0; \ } while (0) /* Get a byte of input into the bit accumulator, or return from inflate() if there is no input available. */ #define PULLBYTE() \ do { \ if (have == 0) goto inf_leave; \ have--; \ hold += (unsigned long)(*next++) << bits; \ bits += 8; \ } while (0) /* Assure that there are at least n bits in the bit accumulator. If there is not enough available input to do that, then return from inflate(). */ #define NEEDBITS(n) \ do { \ while (bits < (unsigned)(n)) \ PULLBYTE(); \ } while (0) /* Return the low n bits of the bit accumulator (n < 16) */ #define BITS(n) \ ((unsigned)hold & ((1U << (n)) - 1)) /* Remove n bits from the bit accumulator */ #define DROPBITS(n) \ do { \ hold >>= (n); \ bits -= (unsigned)(n); \ } while (0) /* Remove zero to seven bits as needed to go to a byte boundary */ #define BYTEBITS() \ do { \ hold >>= bits & 7; \ bits -= bits & 7; \ } while (0) /* Reverse the bytes in a 32-bit value */ #define REVERSE(q) \ ((((q) >> 24) & 0xff) + (((q) >> 8) & 0xff00) + \ (((q) & 0xff00) << 8) + (((q) & 0xff) << 24)) /* inflate() uses a state machine to process as much input data and generate as much output data as possible before returning. The state machine is structured roughly as follows: for (;;) switch (state) { ... case STATEn: if (not enough input data or output space to make progress) return; ... make progress ... state = STATEm; break; ... } so when inflate() is called again, the same case is attempted again, and if the appropriate resources are provided, the machine proceeds to the next state. The NEEDBITS() macro is usually the way the state evaluates whether it can proceed or should return. NEEDBITS() does the return if the requested bits are not available. The typical use of the BITS macros is: NEEDBITS(n); ... do something with BITS(n) ... DROPBITS(n); where NEEDBITS(n) either returns from inflate() if there isn't enough input left to load n bits into the accumulator, or it continues. BITS(n) gives the low n bits in the accumulator. When done, DROPBITS(n) drops the low n bits off the accumulator. INITBITS() clears the accumulator and sets the number of available bits to zero. BYTEBITS() discards just enough bits to put the accumulator on a byte boundary. After BYTEBITS() and a NEEDBITS(8), then BITS(8) would return the next byte in the stream. NEEDBITS(n) uses PULLBYTE() to get an available byte of input, or to return if there is no input available. The decoding of variable length codes uses PULLBYTE() directly in order to pull just enough bytes to decode the next code, and no more. Some states loop until they get enough input, making sure that enough state information is maintained to continue the loop where it left off if NEEDBITS() returns in the loop. For example, want, need, and keep would all have to actually be part of the saved state in case NEEDBITS() returns: case STATEw: while (want < need) { NEEDBITS(n); keep[want++] = BITS(n); DROPBITS(n); } state = STATEx; case STATEx: As shown above, if the next state is also the next case, then the break is omitted. A state may also return if there is not enough output space available to complete that state. Those states are copying stored data, writing a literal byte, and copying a matching string. When returning, a "goto inf_leave" is used to update the total counters, update the check value, and determine whether any progress has been made during that inflate() call in order to return the proper return code. Progress is defined as a change in either strm->avail_in or strm->avail_out. When there is a window, goto inf_leave will update the window with the last output written. If a goto inf_leave occurs in the middle of decompression and there is no window currently, goto inf_leave will create one and copy output to the window for the next call of inflate(). In this implementation, the flush parameter of inflate() only affects the return code (per zlib.h). inflate() always writes as much as possible to strm->next_out, given the space available and the provided input--the effect documented in zlib.h of Z_SYNC_FLUSH. Furthermore, inflate() always defers the allocation of and copying into a sliding window until necessary, which provides the effect documented in zlib.h for Z_FINISH when the entire input stream available. So the only thing the flush parameter actually does is: when flush is set to Z_FINISH, inflate() cannot return Z_OK. Instead it will return Z_BUF_ERROR if it has not reached the end of the stream. */ int ZEXPORT inflate(strm, flush) z_streamp strm; int flush; { struct inflate_state FAR *state; unsigned char FAR *next; /* next input */ unsigned char FAR *put; /* next output */ unsigned have, left; /* available input and output */ unsigned long hold; /* bit buffer */ unsigned bits; /* bits in bit buffer */ unsigned in, out; /* save starting available input and output */ unsigned copy; /* number of stored or match bytes to copy */ unsigned char FAR *from; /* where to copy match bytes from */ code here; /* current decoding table entry */ code last; /* parent table entry */ unsigned len; /* length to copy for repeats, bits to drop */ int ret; /* return code */ #ifdef GUNZIP unsigned char hbuf[4]; /* buffer for gzip header crc calculation */ #endif static const unsigned short order[19] = /* permutation of code lengths */ {16, 17, 18, 0, 8, 7, 9, 6, 10, 5, 11, 4, 12, 3, 13, 2, 14, 1, 15}; if (strm == Z_NULL || strm->state == Z_NULL || strm->next_out == Z_NULL || (strm->next_in == Z_NULL && strm->avail_in != 0)) return Z_STREAM_ERROR; state = (struct inflate_state FAR *)strm->state; if (state->mode == TYPE) state->mode = TYPEDO; /* skip check */ LOAD(); in = have; out = left; ret = Z_OK; for (;;) switch (state->mode) { case HEAD: if (state->wrap == 0) { state->mode = TYPEDO; break; } NEEDBITS(16); #ifdef GUNZIP if ((state->wrap & 2) && hold == 0x8b1f) { /* gzip header */ state->check = crc32(0L, Z_NULL, 0); CRC2(state->check, hold); INITBITS(); state->mode = FLAGS; break; } state->flags = 0; /* expect zlib header */ if (state->head != Z_NULL) state->head->done = -1; if (!(state->wrap & 1) || /* check if zlib header allowed */ #else if ( #endif ((BITS(8) << 8) + (hold >> 8)) % 31) { strm->msg = (char *)"incorrect header check"; state->mode = BAD; break; } if (BITS(4) != Z_DEFLATED) { strm->msg = (char *)"unknown compression method"; state->mode = BAD; break; } DROPBITS(4); len = BITS(4) + 8; if (state->wbits == 0) state->wbits = len; else if (len > state->wbits) { strm->msg = (char *)"invalid window size"; state->mode = BAD; break; } state->dmax = 1U << len; Tracev((stderr, "inflate: zlib header ok\n")); strm->adler = state->check = adler32(0L, Z_NULL, 0); state->mode = hold & 0x200 ? DICTID : TYPE; INITBITS(); break; #ifdef GUNZIP case FLAGS: NEEDBITS(16); state->flags = (int)(hold); if ((state->flags & 0xff) != Z_DEFLATED) { strm->msg = (char *)"unknown compression method"; state->mode = BAD; break; } if (state->flags & 0xe000) { strm->msg = (char *)"unknown header flags set"; state->mode = BAD; break; } if (state->head != Z_NULL) state->head->text = (int)((hold >> 8) & 1); if (state->flags & 0x0200) CRC2(state->check, hold); INITBITS(); state->mode = TIME; case TIME: NEEDBITS(32); if (state->head != Z_NULL) state->head->time = hold; if (state->flags & 0x0200) CRC4(state->check, hold); INITBITS(); state->mode = OS; case OS: NEEDBITS(16); if (state->head != Z_NULL) { state->head->xflags = (int)(hold & 0xff); state->head->os = (int)(hold >> 8); } if (state->flags & 0x0200) CRC2(state->check, hold); INITBITS(); state->mode = EXLEN; case EXLEN: if (state->flags & 0x0400) { NEEDBITS(16); state->length = (unsigned)(hold); if (state->head != Z_NULL) state->head->extra_len = (unsigned)hold; if (state->flags & 0x0200) CRC2(state->check, hold); INITBITS(); } else if (state->head != Z_NULL) state->head->extra = Z_NULL; state->mode = EXTRA; case EXTRA: if (state->flags & 0x0400) { copy = state->length; if (copy > have) copy = have; if (copy) { if (state->head != Z_NULL && state->head->extra != Z_NULL) { len = state->head->extra_len - state->length; zmemcpy(state->head->extra + len, next, len + copy > state->head->extra_max ? state->head->extra_max - len : copy); } if (state->flags & 0x0200) state->check = crc32(state->check, next, copy); have -= copy; next += copy; state->length -= copy; } if (state->length) goto inf_leave; } state->length = 0; state->mode = NAME; case NAME: if (state->flags & 0x0800) { if (have == 0) goto inf_leave; copy = 0; do { len = (unsigned)(next[copy++]); if (state->head != Z_NULL && state->head->name != Z_NULL && state->length < state->head->name_max) state->head->name[state->length++] = len; } while (len && copy < have); if (state->flags & 0x0200) state->check = crc32(state->check, next, copy); have -= copy; next += copy; if (len) goto inf_leave; } else if (state->head != Z_NULL) state->head->name = Z_NULL; state->length = 0; state->mode = COMMENT; case COMMENT: if (state->flags & 0x1000) { if (have == 0) goto inf_leave; copy = 0; do { len = (unsigned)(next[copy++]); if (state->head != Z_NULL && state->head->comment != Z_NULL && state->length < state->head->comm_max) state->head->comment[state->length++] = len; } while (len && copy < have); if (state->flags & 0x0200) state->check = crc32(state->check, next, copy); have -= copy; next += copy; if (len) goto inf_leave; } else if (state->head != Z_NULL) state->head->comment = Z_NULL; state->mode = HCRC; case HCRC: if (state->flags & 0x0200) { NEEDBITS(16); if (hold != (state->check & 0xffff)) { strm->msg = (char *)"header crc mismatch"; state->mode = BAD; break; } INITBITS(); } if (state->head != Z_NULL) { state->head->hcrc = (int)((state->flags >> 9) & 1); state->head->done = 1; } strm->adler = state->check = crc32(0L, Z_NULL, 0); state->mode = TYPE; break; #endif case DICTID: NEEDBITS(32); strm->adler = state->check = REVERSE(hold); INITBITS(); state->mode = DICT; case DICT: if (state->havedict == 0) { RESTORE(); return Z_NEED_DICT; } strm->adler = state->check = adler32(0L, Z_NULL, 0); state->mode = TYPE; case TYPE: if (flush == Z_BLOCK || flush == Z_TREES) goto inf_leave; case TYPEDO: if (state->last) { BYTEBITS(); state->mode = CHECK; break; } NEEDBITS(3); state->last = BITS(1); DROPBITS(1); switch (BITS(2)) { case 0: /* stored block */ Tracev((stderr, "inflate: stored block%s\n", state->last ? " (last)" : "")); state->mode = STORED; break; case 1: /* fixed block */ fixedtables(state); Tracev((stderr, "inflate: fixed codes block%s\n", state->last ? " (last)" : "")); state->mode = LEN_; /* decode codes */ if (flush == Z_TREES) { DROPBITS(2); goto inf_leave; } break; case 2: /* dynamic block */ Tracev((stderr, "inflate: dynamic codes block%s\n", state->last ? " (last)" : "")); state->mode = TABLE; break; case 3: strm->msg = (char *)"invalid block type"; state->mode = BAD; } DROPBITS(2); break; case STORED: BYTEBITS(); /* go to byte boundary */ NEEDBITS(32); if ((hold & 0xffff) != ((hold >> 16) ^ 0xffff)) { strm->msg = (char *)"invalid stored block lengths"; state->mode = BAD; break; } state->length = (unsigned)hold & 0xffff; Tracev((stderr, "inflate: stored length %u\n", state->length)); INITBITS(); state->mode = COPY_; if (flush == Z_TREES) goto inf_leave; case COPY_: state->mode = COPY; case COPY: copy = state->length; if (copy) { if (copy > have) copy = have; if (copy > left) copy = left; if (copy == 0) goto inf_leave; zmemcpy(put, next, copy); have -= copy; next += copy; left -= copy; put += copy; state->length -= copy; break; } Tracev((stderr, "inflate: stored end\n")); state->mode = TYPE; break; case TABLE: NEEDBITS(14); state->nlen = BITS(5) + 257; DROPBITS(5); state->ndist = BITS(5) + 1; DROPBITS(5); state->ncode = BITS(4) + 4; DROPBITS(4); #ifndef PKZIP_BUG_WORKAROUND if (state->nlen > 286 || state->ndist > 30) { strm->msg = (char *)"too many length or distance symbols"; state->mode = BAD; break; } #endif Tracev((stderr, "inflate: table sizes ok\n")); state->have = 0; state->mode = LENLENS; case LENLENS: while (state->have < state->ncode) { NEEDBITS(3); state->lens[order[state->have++]] = (unsigned short)BITS(3); DROPBITS(3); } while (state->have < 19) state->lens[order[state->have++]] = 0; state->next = state->codes; state->lencode = (code const FAR *)(state->next); state->lenbits = 7; ret = inflate_table(CODES, state->lens, 19, &(state->next), &(state->lenbits), state->work); if (ret) { strm->msg = (char *)"invalid code lengths set"; state->mode = BAD; break; } Tracev((stderr, "inflate: code lengths ok\n")); state->have = 0; state->mode = CODELENS; case CODELENS: while (state->have < state->nlen + state->ndist) { for (;;) { here = state->lencode[BITS(state->lenbits)]; if ((unsigned)(here.bits) <= bits) break; PULLBYTE(); } if (here.val < 16) { NEEDBITS(here.bits); DROPBITS(here.bits); state->lens[state->have++] = here.val; } else { if (here.val == 16) { NEEDBITS(here.bits + 2); DROPBITS(here.bits); if (state->have == 0) { strm->msg = (char *)"invalid bit length repeat"; state->mode = BAD; break; } len = state->lens[state->have - 1]; copy = 3 + BITS(2); DROPBITS(2); } else if (here.val == 17) { NEEDBITS(here.bits + 3); DROPBITS(here.bits); len = 0; copy = 3 + BITS(3); DROPBITS(3); } else { NEEDBITS(here.bits + 7); DROPBITS(here.bits); len = 0; copy = 11 + BITS(7); DROPBITS(7); } if (state->have + copy > state->nlen + state->ndist) { strm->msg = (char *)"invalid bit length repeat"; state->mode = BAD; break; } while (copy--) state->lens[state->have++] = (unsigned short)len; } } /* handle error breaks in while */ if (state->mode == BAD) break; /* check for end-of-block code (better have one) */ if (state->lens[256] == 0) { strm->msg = (char *)"invalid code -- missing end-of-block"; state->mode = BAD; break; } /* build code tables -- note: do not change the lenbits or distbits values here (9 and 6) without reading the comments in inftrees.h concerning the ENOUGH constants, which depend on those values */ state->next = state->codes; state->lencode = (code const FAR *)(state->next); state->lenbits = 9; ret = inflate_table(LENS, state->lens, state->nlen, &(state->next), &(state->lenbits), state->work); if (ret) { strm->msg = (char *)"invalid literal/lengths set"; state->mode = BAD; break; } state->distcode = (code const FAR *)(state->next); state->distbits = 6; ret = inflate_table(DISTS, state->lens + state->nlen, state->ndist, &(state->next), &(state->distbits), state->work); if (ret) { strm->msg = (char *)"invalid distances set"; state->mode = BAD; break; } Tracev((stderr, "inflate: codes ok\n")); state->mode = LEN_; if (flush == Z_TREES) goto inf_leave; case LEN_: state->mode = LEN; case LEN: if (have >= 6 && left >= 258) { RESTORE(); inflate_fast(strm, out); LOAD(); if (state->mode == TYPE) state->back = -1; break; } state->back = 0; for (;;) { here = state->lencode[BITS(state->lenbits)]; if ((unsigned)(here.bits) <= bits) break; PULLBYTE(); } if (here.op && (here.op & 0xf0) == 0) { last = here; for (;;) { here = state->lencode[last.val + (BITS(last.bits + last.op) >> last.bits)]; if ((unsigned)(last.bits + here.bits) <= bits) break; PULLBYTE(); } DROPBITS(last.bits); state->back += last.bits; } DROPBITS(here.bits); state->back += here.bits; state->length = (unsigned)here.val; if ((int)(here.op) == 0) { Tracevv((stderr, here.val >= 0x20 && here.val < 0x7f ? "inflate: literal '%c'\n" : "inflate: literal 0x%02x\n", here.val)); state->mode = LIT; break; } if (here.op & 32) { Tracevv((stderr, "inflate: end of block\n")); state->back = -1; state->mode = TYPE; break; } if (here.op & 64) { strm->msg = (char *)"invalid literal/length code"; state->mode = BAD; break; } state->extra = (unsigned)(here.op) & 15; state->mode = LENEXT; case LENEXT: if (state->extra) { NEEDBITS(state->extra); state->length += BITS(state->extra); DROPBITS(state->extra); state->back += state->extra; } Tracevv((stderr, "inflate: length %u\n", state->length)); state->was = state->length; state->mode = DIST; case DIST: for (;;) { here = state->distcode[BITS(state->distbits)]; if ((unsigned)(here.bits) <= bits) break; PULLBYTE(); } if ((here.op & 0xf0) == 0) { last = here; for (;;) { here = state->distcode[last.val + (BITS(last.bits + last.op) >> last.bits)]; if ((unsigned)(last.bits + here.bits) <= bits) break; PULLBYTE(); } DROPBITS(last.bits); state->back += last.bits; } DROPBITS(here.bits); state->back += here.bits; if (here.op & 64) { strm->msg = (char *)"invalid distance code"; state->mode = BAD; break; } state->offset = (unsigned)here.val; state->extra = (unsigned)(here.op) & 15; state->mode = DISTEXT; case DISTEXT: if (state->extra) { NEEDBITS(state->extra); state->offset += BITS(state->extra); DROPBITS(state->extra); state->back += state->extra; } #ifdef INFLATE_STRICT if (state->offset > state->dmax) { strm->msg = (char *)"invalid distance too far back"; state->mode = BAD; break; } #endif Tracevv((stderr, "inflate: distance %u\n", state->offset)); state->mode = MATCH; case MATCH: if (left == 0) goto inf_leave; copy = out - left; if (state->offset > copy) { /* copy from window */ copy = state->offset - copy; if (copy > state->whave) { if (state->sane) { strm->msg = (char *)"invalid distance too far back"; state->mode = BAD; break; } #ifdef INFLATE_ALLOW_INVALID_DISTANCE_TOOFAR_ARRR Trace((stderr, "inflate.c too far\n")); copy -= state->whave; if (copy > state->length) copy = state->length; if (copy > left) copy = left; left -= copy; state->length -= copy; do { *put++ = 0; } while (--copy); if (state->length == 0) state->mode = LEN; break; #endif } if (copy > state->wnext) { copy -= state->wnext; from = state->window + (state->wsize - copy); } else from = state->window + (state->wnext - copy); if (copy > state->length) copy = state->length; } else { /* copy from output */ from = put - state->offset; copy = state->length; } if (copy > left) copy = left; left -= copy; state->length -= copy; do { *put++ = *from++; } while (--copy); if (state->length == 0) state->mode = LEN; break; case LIT: if (left == 0) goto inf_leave; *put++ = (unsigned char)(state->length); left--; state->mode = LEN; break; case CHECK: if (state->wrap) { NEEDBITS(32); out -= left; strm->total_out += out; state->total += out; if (out) strm->adler = state->check = UPDATE(state->check, put - out, out); out = left; if (( #ifdef GUNZIP state->flags ? hold : #endif REVERSE(hold)) != state->check) { strm->msg = (char *)"incorrect data check"; state->mode = BAD; break; } INITBITS(); Tracev((stderr, "inflate: check matches trailer\n")); } #ifdef GUNZIP state->mode = LENGTH; case LENGTH: if (state->wrap && state->flags) { NEEDBITS(32); if (hold != (state->total & 0xffffffffUL)) { strm->msg = (char *)"incorrect length check"; state->mode = BAD; break; } INITBITS(); Tracev((stderr, "inflate: length matches trailer\n")); } #endif state->mode = DONE; case DONE: ret = Z_STREAM_END; goto inf_leave; case BAD: ret = Z_DATA_ERROR; goto inf_leave; case MEM: return Z_MEM_ERROR; case SYNC: default: return Z_STREAM_ERROR; } /* Return from inflate(), updating the total counts and the check value. If there was no progress during the inflate() call, return a buffer error. Call updatewindow() to create and/or update the window state. Note: a memory error from inflate() is non-recoverable. */ inf_leave: RESTORE(); if (state->wsize || (state->mode < CHECK && out != strm->avail_out)) if (updatewindow(strm, out)) { state->mode = MEM; return Z_MEM_ERROR; } in -= strm->avail_in; out -= strm->avail_out; strm->total_in += in; strm->total_out += out; state->total += out; if (state->wrap && out) strm->adler = state->check = UPDATE(state->check, strm->next_out - out, out); strm->data_type = state->bits + (state->last ? 64 : 0) + (state->mode == TYPE ? 128 : 0) + (state->mode == LEN_ || state->mode == COPY_ ? 256 : 0); if (((in == 0 && out == 0) || flush == Z_FINISH) && ret == Z_OK) ret = Z_BUF_ERROR; return ret; } int ZEXPORT inflateEnd(strm) z_streamp strm; { struct inflate_state FAR *state; if (strm == Z_NULL || strm->state == Z_NULL || strm->zfree == (free_func)0) return Z_STREAM_ERROR; state = (struct inflate_state FAR *)strm->state; if (state->window != Z_NULL) ZFREE(strm, state->window); ZFREE(strm, strm->state); strm->state = Z_NULL; Tracev((stderr, "inflate: end\n")); return Z_OK; } int ZEXPORT inflateSetDictionary(strm, dictionary, dictLength) z_streamp strm; const Bytef *dictionary; uInt dictLength; { struct inflate_state FAR *state; unsigned long id; /* check state */ if (strm == Z_NULL || strm->state == Z_NULL) return Z_STREAM_ERROR; state = (struct inflate_state FAR *)strm->state; if (state->wrap != 0 && state->mode != DICT) return Z_STREAM_ERROR; /* check for correct dictionary id */ if (state->mode == DICT) { id = adler32(0L, Z_NULL, 0); id = adler32(id, dictionary, dictLength); if (id != state->check) return Z_DATA_ERROR; } /* copy dictionary to window */ if (updatewindow(strm, strm->avail_out)) { state->mode = MEM; return Z_MEM_ERROR; } if (dictLength > state->wsize) { zmemcpy(state->window, dictionary + dictLength - state->wsize, state->wsize); state->whave = state->wsize; } else { zmemcpy(state->window + state->wsize - dictLength, dictionary, dictLength); state->whave = dictLength; } state->havedict = 1; Tracev((stderr, "inflate: dictionary set\n")); return Z_OK; } int ZEXPORT inflateGetHeader(strm, head) z_streamp strm; gz_headerp head; { struct inflate_state FAR *state; /* check state */ if (strm == Z_NULL || strm->state == Z_NULL) return Z_STREAM_ERROR; state = (struct inflate_state FAR *)strm->state; if ((state->wrap & 2) == 0) return Z_STREAM_ERROR; /* save header structure */ state->head = head; head->done = 0; return Z_OK; } /* Search buf[0..len-1] for the pattern: 0, 0, 0xff, 0xff. Return when found or when out of input. When called, *have is the number of pattern bytes found in order so far, in 0..3. On return *have is updated to the new state. If on return *have equals four, then the pattern was found and the return value is how many bytes were read including the last byte of the pattern. If *have is less than four, then the pattern has not been found yet and the return value is len. In the latter case, syncsearch() can be called again with more data and the *have state. *have is initialized to zero for the first call. */ local unsigned syncsearch(have, buf, len) unsigned FAR *have; unsigned char FAR *buf; unsigned len; { unsigned got; unsigned next; got = *have; next = 0; while (next < len && got < 4) { if ((int)(buf[next]) == (got < 2 ? 0 : 0xff)) got++; else if (buf[next]) got = 0; else got = 4 - got; next++; } *have = got; return next; } int ZEXPORT inflateSync(strm) z_streamp strm; { unsigned len; /* number of bytes to look at or looked at */ unsigned long in, out; /* temporary to save total_in and total_out */ unsigned char buf[4]; /* to restore bit buffer to byte string */ struct inflate_state FAR *state; /* check parameters */ if (strm == Z_NULL || strm->state == Z_NULL) return Z_STREAM_ERROR; state = (struct inflate_state FAR *)strm->state; if (strm->avail_in == 0 && state->bits < 8) return Z_BUF_ERROR; /* if first time, start search in bit buffer */ if (state->mode != SYNC) { state->mode = SYNC; state->hold <<= state->bits & 7; state->bits -= state->bits & 7; len = 0; while (state->bits >= 8) { buf[len++] = (unsigned char)(state->hold); state->hold >>= 8; state->bits -= 8; } state->have = 0; syncsearch(&(state->have), buf, len); } /* search available input */ len = syncsearch(&(state->have), strm->next_in, strm->avail_in); strm->avail_in -= len; strm->next_in += len; strm->total_in += len; /* return no joy or set up to restart inflate() on a new block */ if (state->have != 4) return Z_DATA_ERROR; in = strm->total_in; out = strm->total_out; inflateReset(strm); strm->total_in = in; strm->total_out = out; state->mode = TYPE; return Z_OK; } /* Returns true if inflate is currently at the end of a block generated by Z_SYNC_FLUSH or Z_FULL_FLUSH. This function is used by one PPP implementation to provide an additional safety check. PPP uses Z_SYNC_FLUSH but removes the length bytes of the resulting empty stored block. When decompressing, PPP checks that at the end of input packet, inflate is waiting for these length bytes. */ int ZEXPORT inflateSyncPoint(strm) z_streamp strm; { struct inflate_state FAR *state; if (strm == Z_NULL || strm->state == Z_NULL) return Z_STREAM_ERROR; state = (struct inflate_state FAR *)strm->state; return state->mode == STORED && state->bits == 0; } int ZEXPORT inflateCopy(dest, source) z_streamp dest; z_streamp source; { struct inflate_state FAR *state; struct inflate_state FAR *copy; unsigned char FAR *window; unsigned wsize; /* check input */ if (dest == Z_NULL || source == Z_NULL || source->state == Z_NULL || source->zalloc == (alloc_func)0 || source->zfree == (free_func)0) return Z_STREAM_ERROR; state = (struct inflate_state FAR *)source->state; /* allocate space */ copy = (struct inflate_state FAR *) ZALLOC(source, 1, sizeof(struct inflate_state)); if (copy == Z_NULL) return Z_MEM_ERROR; window = Z_NULL; if (state->window != Z_NULL) { window = (unsigned char FAR *) ZALLOC(source, 1U << state->wbits, sizeof(unsigned char)); if (window == Z_NULL) { ZFREE(source, copy); return Z_MEM_ERROR; } } /* copy state */ zmemcpy(dest, source, sizeof(z_stream)); zmemcpy(copy, state, sizeof(struct inflate_state)); if (state->lencode >= state->codes && state->lencode <= state->codes + ENOUGH - 1) { copy->lencode = copy->codes + (state->lencode - state->codes); copy->distcode = copy->codes + (state->distcode - state->codes); } copy->next = copy->codes + (state->next - state->codes); if (window != Z_NULL) { wsize = 1U << state->wbits; zmemcpy(window, state->window, wsize); } copy->window = window; dest->state = (struct internal_state FAR *)copy; return Z_OK; } int ZEXPORT inflateUndermine(strm, subvert) z_streamp strm; int subvert; { struct inflate_state FAR *state; if (strm == Z_NULL || strm->state == Z_NULL) return Z_STREAM_ERROR; state = (struct inflate_state FAR *)strm->state; state->sane = !subvert; #ifdef INFLATE_ALLOW_INVALID_DISTANCE_TOOFAR_ARRR return Z_OK; #else state->sane = 1; return Z_DATA_ERROR; #endif } long ZEXPORT inflateMark(strm) z_streamp strm; { struct inflate_state FAR *state; if (strm == Z_NULL || strm->state == Z_NULL) return -1L << 16; state = (struct inflate_state FAR *)strm->state; return ((long)(state->back) << 16) + (state->mode == COPY ? state->length : (state->mode == MATCH ? state->was - state->length : 0)); } healpy-1.8.1/cfitsio/zlib/deflate.h0000654000175000017530000003055712272000775017604 0ustar zoncaplanck00000000000000/* deflate.h -- internal compression state * Copyright (C) 1995-2010 Jean-loup Gailly * For conditions of distribution and use, see copyright notice in zlib.h */ /* WARNING: this file should *not* be used by applications. It is part of the implementation of the compression library and is subject to change. Applications should only use zlib.h. */ #ifndef DEFLATE_H #define DEFLATE_H #include "zutil.h" /* define NO_GZIP when compiling if you want to disable gzip header and trailer creation by deflate(). NO_GZIP would be used to avoid linking in the crc code when it is not needed. For shared libraries, gzip encoding should be left enabled. */ #ifndef NO_GZIP # define GZIP #endif /* =========================================================================== * Internal compression state. */ #define LENGTH_CODES 29 /* number of length codes, not counting the special END_BLOCK code */ #define LITERALS 256 /* number of literal bytes 0..255 */ #define L_CODES (LITERALS+1+LENGTH_CODES) /* number of Literal or Length codes, including the END_BLOCK code */ #define D_CODES 30 /* number of distance codes */ #define BL_CODES 19 /* number of codes used to transfer the bit lengths */ #define HEAP_SIZE (2*L_CODES+1) /* maximum heap size */ #define MAX_BITS 15 /* All codes must not exceed MAX_BITS bits */ #define INIT_STATE 42 #define EXTRA_STATE 69 #define NAME_STATE 73 #define COMMENT_STATE 91 #define HCRC_STATE 103 #define BUSY_STATE 113 #define FINISH_STATE 666 /* Stream status */ /* Data structure describing a single value and its code string. */ typedef struct ct_data_s { union { ush freq; /* frequency count */ ush code; /* bit string */ } fc; union { ush dad; /* father node in Huffman tree */ ush len; /* length of bit string */ } dl; } FAR ct_data; #define Freq fc.freq #define Code fc.code #define Dad dl.dad #define Len dl.len typedef struct static_tree_desc_s static_tree_desc; typedef struct tree_desc_s { ct_data *dyn_tree; /* the dynamic tree */ int max_code; /* largest code with non zero frequency */ static_tree_desc *stat_desc; /* the corresponding static tree */ } FAR tree_desc; typedef ush Pos; typedef Pos FAR Posf; typedef unsigned IPos; /* A Pos is an index in the character window. We use short instead of int to * save space in the various tables. IPos is used only for parameter passing. */ typedef struct internal_state { z_streamp strm; /* pointer back to this zlib stream */ int status; /* as the name implies */ Bytef *pending_buf; /* output still pending */ ulg pending_buf_size; /* size of pending_buf */ Bytef *pending_out; /* next pending byte to output to the stream */ uInt pending; /* nb of bytes in the pending buffer */ int wrap; /* bit 0 true for zlib, bit 1 true for gzip */ gz_headerp gzhead; /* gzip header information to write */ uInt gzindex; /* where in extra, name, or comment */ Byte method; /* STORED (for zip only) or DEFLATED */ int last_flush; /* value of flush param for previous deflate call */ /* used by deflate.c: */ uInt w_size; /* LZ77 window size (32K by default) */ uInt w_bits; /* log2(w_size) (8..16) */ uInt w_mask; /* w_size - 1 */ Bytef *window; /* Sliding window. Input bytes are read into the second half of the window, * and move to the first half later to keep a dictionary of at least wSize * bytes. With this organization, matches are limited to a distance of * wSize-MAX_MATCH bytes, but this ensures that IO is always * performed with a length multiple of the block size. Also, it limits * the window size to 64K, which is quite useful on MSDOS. * To do: use the user input buffer as sliding window. */ ulg window_size; /* Actual size of window: 2*wSize, except when the user input buffer * is directly used as sliding window. */ Posf *prev; /* Link to older string with same hash index. To limit the size of this * array to 64K, this link is maintained only for the last 32K strings. * An index in this array is thus a window index modulo 32K. */ Posf *head; /* Heads of the hash chains or NIL. */ uInt ins_h; /* hash index of string to be inserted */ uInt hash_size; /* number of elements in hash table */ uInt hash_bits; /* log2(hash_size) */ uInt hash_mask; /* hash_size-1 */ uInt hash_shift; /* Number of bits by which ins_h must be shifted at each input * step. It must be such that after MIN_MATCH steps, the oldest * byte no longer takes part in the hash key, that is: * hash_shift * MIN_MATCH >= hash_bits */ long block_start; /* Window position at the beginning of the current output block. Gets * negative when the window is moved backwards. */ uInt match_length; /* length of best match */ IPos prev_match; /* previous match */ int match_available; /* set if previous match exists */ uInt strstart; /* start of string to insert */ uInt match_start; /* start of matching string */ uInt lookahead; /* number of valid bytes ahead in window */ uInt prev_length; /* Length of the best match at previous step. Matches not greater than this * are discarded. This is used in the lazy match evaluation. */ uInt max_chain_length; /* To speed up deflation, hash chains are never searched beyond this * length. A higher limit improves compression ratio but degrades the * speed. */ uInt max_lazy_match; /* Attempt to find a better match only when the current match is strictly * smaller than this value. This mechanism is used only for compression * levels >= 4. */ # define max_insert_length max_lazy_match /* Insert new strings in the hash table only if the match length is not * greater than this length. This saves time but degrades compression. * max_insert_length is used only for compression levels <= 3. */ int level; /* compression level (1..9) */ int strategy; /* favor or force Huffman coding*/ uInt good_match; /* Use a faster search when the previous match is longer than this */ int nice_match; /* Stop searching when current match exceeds this */ /* used by trees.c: */ /* Didn't use ct_data typedef below to supress compiler warning */ struct ct_data_s dyn_ltree[HEAP_SIZE]; /* literal and length tree */ struct ct_data_s dyn_dtree[2*D_CODES+1]; /* distance tree */ struct ct_data_s bl_tree[2*BL_CODES+1]; /* Huffman tree for bit lengths */ struct tree_desc_s l_desc; /* desc. for literal tree */ struct tree_desc_s d_desc; /* desc. for distance tree */ struct tree_desc_s bl_desc; /* desc. for bit length tree */ ush bl_count[MAX_BITS+1]; /* number of codes at each bit length for an optimal tree */ int heap[2*L_CODES+1]; /* heap used to build the Huffman trees */ int heap_len; /* number of elements in the heap */ int heap_max; /* element of largest frequency */ /* The sons of heap[n] are heap[2*n] and heap[2*n+1]. heap[0] is not used. * The same heap array is used to build all trees. */ uch depth[2*L_CODES+1]; /* Depth of each subtree used as tie breaker for trees of equal frequency */ uchf *l_buf; /* buffer for literals or lengths */ uInt lit_bufsize; /* Size of match buffer for literals/lengths. There are 4 reasons for * limiting lit_bufsize to 64K: * - frequencies can be kept in 16 bit counters * - if compression is not successful for the first block, all input * data is still in the window so we can still emit a stored block even * when input comes from standard input. (This can also be done for * all blocks if lit_bufsize is not greater than 32K.) * - if compression is not successful for a file smaller than 64K, we can * even emit a stored file instead of a stored block (saving 5 bytes). * This is applicable only for zip (not gzip or zlib). * - creating new Huffman trees less frequently may not provide fast * adaptation to changes in the input data statistics. (Take for * example a binary file with poorly compressible code followed by * a highly compressible string table.) Smaller buffer sizes give * fast adaptation but have of course the overhead of transmitting * trees more frequently. * - I can't count above 4 */ uInt last_lit; /* running index in l_buf */ ushf *d_buf; /* Buffer for distances. To simplify the code, d_buf and l_buf have * the same number of elements. To use different lengths, an extra flag * array would be necessary. */ ulg opt_len; /* bit length of current block with optimal trees */ ulg static_len; /* bit length of current block with static trees */ uInt matches; /* number of string matches in current block */ int last_eob_len; /* bit length of EOB code for last block */ #ifdef DEBUG ulg compressed_len; /* total bit length of compressed file mod 2^32 */ ulg bits_sent; /* bit length of compressed data sent mod 2^32 */ #endif ush bi_buf; /* Output buffer. bits are inserted starting at the bottom (least * significant bits). */ int bi_valid; /* Number of valid bits in bi_buf. All bits above the last valid bit * are always zero. */ ulg high_water; /* High water mark offset in window for initialized bytes -- bytes above * this are set to zero in order to avoid memory check warnings when * longest match routines access bytes past the input. This is then * updated to the new high water mark. */ } FAR deflate_state; /* Output a byte on the stream. * IN assertion: there is enough room in pending_buf. */ #define put_byte(s, c) {s->pending_buf[s->pending++] = (c);} #define MIN_LOOKAHEAD (MAX_MATCH+MIN_MATCH+1) /* Minimum amount of lookahead, except at the end of the input file. * See deflate.c for comments about the MIN_MATCH+1. */ #define MAX_DIST(s) ((s)->w_size-MIN_LOOKAHEAD) /* In order to simplify the code, particularly on 16 bit machines, match * distances are limited to MAX_DIST instead of WSIZE. */ #define WIN_INIT MAX_MATCH /* Number of bytes after end of data in window to initialize in order to avoid memory checker errors from longest match routines */ /* in trees.c */ void ZLIB_INTERNAL _tr_init OF((deflate_state *s)); int ZLIB_INTERNAL _tr_tally OF((deflate_state *s, unsigned dist, unsigned lc)); void ZLIB_INTERNAL _tr_flush_block OF((deflate_state *s, charf *buf, ulg stored_len, int last)); void ZLIB_INTERNAL _tr_align OF((deflate_state *s)); void ZLIB_INTERNAL _tr_stored_block OF((deflate_state *s, charf *buf, ulg stored_len, int last)); #define d_code(dist) \ ((dist) < 256 ? _dist_code[dist] : _dist_code[256+((dist)>>7)]) /* Mapping from a distance to a distance code. dist is the distance - 1 and * must not have side effects. _dist_code[256] and _dist_code[257] are never * used. */ #ifndef DEBUG /* Inline versions of _tr_tally for speed: */ #if defined(GEN_TREES_H) || !defined(STDC) extern uch ZLIB_INTERNAL _length_code[]; extern uch ZLIB_INTERNAL _dist_code[]; #else extern const uch ZLIB_INTERNAL _length_code[]; extern const uch ZLIB_INTERNAL _dist_code[]; #endif # define _tr_tally_lit(s, c, flush) \ { uch cc = (c); \ s->d_buf[s->last_lit] = 0; \ s->l_buf[s->last_lit++] = cc; \ s->dyn_ltree[cc].Freq++; \ flush = (s->last_lit == s->lit_bufsize-1); \ } # define _tr_tally_dist(s, distance, length, flush) \ { uch len = (length); \ ush dist = (distance); \ s->d_buf[s->last_lit] = dist; \ s->l_buf[s->last_lit++] = len; \ dist--; \ s->dyn_ltree[_length_code[len]+LITERALS+1].Freq++; \ s->dyn_dtree[d_code(dist)].Freq++; \ flush = (s->last_lit == s->lit_bufsize-1); \ } #else # define _tr_tally_lit(s, c, flush) flush = _tr_tally(s, 0, c) # define _tr_tally_dist(s, distance, length, flush) \ flush = _tr_tally(s, distance, length) #endif #endif /* DEFLATE_H */ healpy-1.8.1/cfitsio/zlib/trees.c0000654000175000017530000013025112272000775017305 0ustar zoncaplanck00000000000000/* trees.c -- output deflated data using Huffman coding * Copyright (C) 1995-2010 Jean-loup Gailly * detect_data_type() function provided freely by Cosmin Truta, 2006 * For conditions of distribution and use, see copyright notice in zlib.h */ /* * ALGORITHM * * The "deflation" process uses several Huffman trees. The more * common source values are represented by shorter bit sequences. * * Each code tree is stored in a compressed form which is itself * a Huffman encoding of the lengths of all the code strings (in * ascending order by source values). The actual code strings are * reconstructed from the lengths in the inflate process, as described * in the deflate specification. * * REFERENCES * * Deutsch, L.P.,"'Deflate' Compressed Data Format Specification". * Available in ftp.uu.net:/pub/archiving/zip/doc/deflate-1.1.doc * * Storer, James A. * Data Compression: Methods and Theory, pp. 49-50. * Computer Science Press, 1988. ISBN 0-7167-8156-5. * * Sedgewick, R. * Algorithms, p290. * Addison-Wesley, 1983. ISBN 0-201-06672-6. */ /* #define GEN_TREES_H */ #include "deflate.h" #ifdef DEBUG # include #endif /* =========================================================================== * Constants */ #define MAX_BL_BITS 7 /* Bit length codes must not exceed MAX_BL_BITS bits */ #define END_BLOCK 256 /* end of block literal code */ #define REP_3_6 16 /* repeat previous bit length 3-6 times (2 bits of repeat count) */ #define REPZ_3_10 17 /* repeat a zero length 3-10 times (3 bits of repeat count) */ #define REPZ_11_138 18 /* repeat a zero length 11-138 times (7 bits of repeat count) */ local const int extra_lbits[LENGTH_CODES] /* extra bits for each length code */ = {0,0,0,0,0,0,0,0,1,1,1,1,2,2,2,2,3,3,3,3,4,4,4,4,5,5,5,5,0}; local const int extra_dbits[D_CODES] /* extra bits for each distance code */ = {0,0,0,0,1,1,2,2,3,3,4,4,5,5,6,6,7,7,8,8,9,9,10,10,11,11,12,12,13,13}; local const int extra_blbits[BL_CODES]/* extra bits for each bit length code */ = {0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,3,7}; local const uch bl_order[BL_CODES] = {16,17,18,0,8,7,9,6,10,5,11,4,12,3,13,2,14,1,15}; /* The lengths of the bit length codes are sent in order of decreasing * probability, to avoid transmitting the lengths for unused bit length codes. */ #define Buf_size (8 * 2*sizeof(char)) /* Number of bits used within bi_buf. (bi_buf might be implemented on * more than 16 bits on some systems.) */ /* =========================================================================== * Local data. These are initialized only once. */ #define DIST_CODE_LEN 512 /* see definition of array dist_code below */ #if defined(GEN_TREES_H) || !defined(STDC) /* non ANSI compilers may not accept trees.h */ local ct_data static_ltree[L_CODES+2]; /* The static literal tree. Since the bit lengths are imposed, there is no * need for the L_CODES extra codes used during heap construction. However * The codes 286 and 287 are needed to build a canonical tree (see _tr_init * below). */ local ct_data static_dtree[D_CODES]; /* The static distance tree. (Actually a trivial tree since all codes use * 5 bits.) */ uch _dist_code[DIST_CODE_LEN]; /* Distance codes. The first 256 values correspond to the distances * 3 .. 258, the last 256 values correspond to the top 8 bits of * the 15 bit distances. */ uch _length_code[MAX_MATCH-MIN_MATCH+1]; /* length code for each normalized match length (0 == MIN_MATCH) */ local int base_length[LENGTH_CODES]; /* First normalized length for each code (0 = MIN_MATCH) */ local int base_dist[D_CODES]; /* First normalized distance for each code (0 = distance of 1) */ #else # include "trees.h" #endif /* GEN_TREES_H */ struct static_tree_desc_s { const ct_data *static_tree; /* static tree or NULL */ const intf *extra_bits; /* extra bits for each code or NULL */ int extra_base; /* base index for extra_bits */ int elems; /* max number of elements in the tree */ int max_length; /* max bit length for the codes */ }; local static_tree_desc static_l_desc = {static_ltree, extra_lbits, LITERALS+1, L_CODES, MAX_BITS}; local static_tree_desc static_d_desc = {static_dtree, extra_dbits, 0, D_CODES, MAX_BITS}; local static_tree_desc static_bl_desc = {(const ct_data *)0, extra_blbits, 0, BL_CODES, MAX_BL_BITS}; /* =========================================================================== * Local (static) routines in this file. */ local void tr_static_init OF((void)); local void init_block OF((deflate_state *s)); local void pqdownheap OF((deflate_state *s, ct_data *tree, int k)); local void gen_bitlen OF((deflate_state *s, tree_desc *desc)); local void gen_codes OF((ct_data *tree, int max_code, ushf *bl_count)); local void build_tree OF((deflate_state *s, tree_desc *desc)); local void scan_tree OF((deflate_state *s, ct_data *tree, int max_code)); local void send_tree OF((deflate_state *s, ct_data *tree, int max_code)); local int build_bl_tree OF((deflate_state *s)); local void send_all_trees OF((deflate_state *s, int lcodes, int dcodes, int blcodes)); local void compress_block OF((deflate_state *s, ct_data *ltree, ct_data *dtree)); local int detect_data_type OF((deflate_state *s)); local unsigned bi_reverse OF((unsigned value, int length)); local void bi_windup OF((deflate_state *s)); local void bi_flush OF((deflate_state *s)); local void copy_block OF((deflate_state *s, charf *buf, unsigned len, int header)); #ifdef GEN_TREES_H local void gen_trees_header OF((void)); #endif #ifndef DEBUG # define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len) /* Send a code of the given tree. c and tree must not have side effects */ #else /* DEBUG */ # define send_code(s, c, tree) \ { if (z_verbose>2) fprintf(stderr,"\ncd %3d ",(c)); \ send_bits(s, tree[c].Code, tree[c].Len); } #endif /* =========================================================================== * Output a short LSB first on the stream. * IN assertion: there is enough room in pendingBuf. */ #define put_short(s, w) { \ put_byte(s, (uch)((w) & 0xff)); \ put_byte(s, (uch)((ush)(w) >> 8)); \ } /* =========================================================================== * Send a value on a given number of bits. * IN assertion: length <= 16 and value fits in length bits. */ #ifdef DEBUG local void send_bits OF((deflate_state *s, int value, int length)); local void send_bits(s, value, length) deflate_state *s; int value; /* value to send */ int length; /* number of bits */ { Tracevv((stderr," l %2d v %4x ", length, value)); Assert(length > 0 && length <= 15, "invalid length"); s->bits_sent += (ulg)length; /* If not enough room in bi_buf, use (valid) bits from bi_buf and * (16 - bi_valid) bits from value, leaving (width - (16-bi_valid)) * unused bits in value. */ if (s->bi_valid > (int)Buf_size - length) { s->bi_buf |= (ush)value << s->bi_valid; put_short(s, s->bi_buf); s->bi_buf = (ush)value >> (Buf_size - s->bi_valid); s->bi_valid += length - Buf_size; } else { s->bi_buf |= (ush)value << s->bi_valid; s->bi_valid += length; } } #else /* !DEBUG */ #define send_bits(s, value, length) \ { int len = length;\ if (s->bi_valid > (int)Buf_size - len) {\ int val = value;\ s->bi_buf |= (ush)val << s->bi_valid;\ put_short(s, s->bi_buf);\ s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\ s->bi_valid += len - Buf_size;\ } else {\ s->bi_buf |= (ush)(value) << s->bi_valid;\ s->bi_valid += len;\ }\ } #endif /* DEBUG */ /* the arguments must not have side effects */ /* =========================================================================== * Initialize the various 'constant' tables. */ local void tr_static_init() { #if defined(GEN_TREES_H) || !defined(STDC) static int static_init_done = 0; int n; /* iterates over tree elements */ int bits; /* bit counter */ int length; /* length value */ int code; /* code value */ int dist; /* distance index */ ush bl_count[MAX_BITS+1]; /* number of codes at each bit length for an optimal tree */ if (static_init_done) return; /* For some embedded targets, global variables are not initialized: */ #ifdef NO_INIT_GLOBAL_POINTERS static_l_desc.static_tree = static_ltree; static_l_desc.extra_bits = extra_lbits; static_d_desc.static_tree = static_dtree; static_d_desc.extra_bits = extra_dbits; static_bl_desc.extra_bits = extra_blbits; #endif /* Initialize the mapping length (0..255) -> length code (0..28) */ length = 0; for (code = 0; code < LENGTH_CODES-1; code++) { base_length[code] = length; for (n = 0; n < (1< dist code (0..29) */ dist = 0; for (code = 0 ; code < 16; code++) { base_dist[code] = dist; for (n = 0; n < (1<>= 7; /* from now on, all distances are divided by 128 */ for ( ; code < D_CODES; code++) { base_dist[code] = dist << 7; for (n = 0; n < (1<<(extra_dbits[code]-7)); n++) { _dist_code[256 + dist++] = (uch)code; } } Assert (dist == 256, "tr_static_init: 256+dist != 512"); /* Construct the codes of the static literal tree */ for (bits = 0; bits <= MAX_BITS; bits++) bl_count[bits] = 0; n = 0; while (n <= 143) static_ltree[n++].Len = 8, bl_count[8]++; while (n <= 255) static_ltree[n++].Len = 9, bl_count[9]++; while (n <= 279) static_ltree[n++].Len = 7, bl_count[7]++; while (n <= 287) static_ltree[n++].Len = 8, bl_count[8]++; /* Codes 286 and 287 do not exist, but we must include them in the * tree construction to get a canonical Huffman tree (longest code * all ones) */ gen_codes((ct_data *)static_ltree, L_CODES+1, bl_count); /* The static distance tree is trivial: */ for (n = 0; n < D_CODES; n++) { static_dtree[n].Len = 5; static_dtree[n].Code = bi_reverse((unsigned)n, 5); } static_init_done = 1; # ifdef GEN_TREES_H gen_trees_header(); # endif #endif /* defined(GEN_TREES_H) || !defined(STDC) */ } /* =========================================================================== * Genererate the file trees.h describing the static trees. */ #ifdef GEN_TREES_H # ifndef DEBUG # include # endif # define SEPARATOR(i, last, width) \ ((i) == (last)? "\n};\n\n" : \ ((i) % (width) == (width)-1 ? ",\n" : ", ")) void gen_trees_header() { FILE *header = fopen("trees.h", "w"); int i; Assert (header != NULL, "Can't open trees.h"); fprintf(header, "/* header created automatically with -DGEN_TREES_H */\n\n"); fprintf(header, "local const ct_data static_ltree[L_CODES+2] = {\n"); for (i = 0; i < L_CODES+2; i++) { fprintf(header, "{{%3u},{%3u}}%s", static_ltree[i].Code, static_ltree[i].Len, SEPARATOR(i, L_CODES+1, 5)); } fprintf(header, "local const ct_data static_dtree[D_CODES] = {\n"); for (i = 0; i < D_CODES; i++) { fprintf(header, "{{%2u},{%2u}}%s", static_dtree[i].Code, static_dtree[i].Len, SEPARATOR(i, D_CODES-1, 5)); } fprintf(header, "const uch ZLIB_INTERNAL _dist_code[DIST_CODE_LEN] = {\n"); for (i = 0; i < DIST_CODE_LEN; i++) { fprintf(header, "%2u%s", _dist_code[i], SEPARATOR(i, DIST_CODE_LEN-1, 20)); } fprintf(header, "const uch ZLIB_INTERNAL _length_code[MAX_MATCH-MIN_MATCH+1]= {\n"); for (i = 0; i < MAX_MATCH-MIN_MATCH+1; i++) { fprintf(header, "%2u%s", _length_code[i], SEPARATOR(i, MAX_MATCH-MIN_MATCH, 20)); } fprintf(header, "local const int base_length[LENGTH_CODES] = {\n"); for (i = 0; i < LENGTH_CODES; i++) { fprintf(header, "%1u%s", base_length[i], SEPARATOR(i, LENGTH_CODES-1, 20)); } fprintf(header, "local const int base_dist[D_CODES] = {\n"); for (i = 0; i < D_CODES; i++) { fprintf(header, "%5u%s", base_dist[i], SEPARATOR(i, D_CODES-1, 10)); } fclose(header); } #endif /* GEN_TREES_H */ /* =========================================================================== * Initialize the tree data structures for a new zlib stream. */ void ZLIB_INTERNAL _tr_init(s) deflate_state *s; { tr_static_init(); s->l_desc.dyn_tree = s->dyn_ltree; s->l_desc.stat_desc = &static_l_desc; s->d_desc.dyn_tree = s->dyn_dtree; s->d_desc.stat_desc = &static_d_desc; s->bl_desc.dyn_tree = s->bl_tree; s->bl_desc.stat_desc = &static_bl_desc; s->bi_buf = 0; s->bi_valid = 0; s->last_eob_len = 8; /* enough lookahead for inflate */ #ifdef DEBUG s->compressed_len = 0L; s->bits_sent = 0L; #endif /* Initialize the first block of the first file: */ init_block(s); } /* =========================================================================== * Initialize a new block. */ local void init_block(s) deflate_state *s; { int n; /* iterates over tree elements */ /* Initialize the trees. */ for (n = 0; n < L_CODES; n++) s->dyn_ltree[n].Freq = 0; for (n = 0; n < D_CODES; n++) s->dyn_dtree[n].Freq = 0; for (n = 0; n < BL_CODES; n++) s->bl_tree[n].Freq = 0; s->dyn_ltree[END_BLOCK].Freq = 1; s->opt_len = s->static_len = 0L; s->last_lit = s->matches = 0; } #define SMALLEST 1 /* Index within the heap array of least frequent node in the Huffman tree */ /* =========================================================================== * Remove the smallest element from the heap and recreate the heap with * one less element. Updates heap and heap_len. */ #define pqremove(s, tree, top) \ {\ top = s->heap[SMALLEST]; \ s->heap[SMALLEST] = s->heap[s->heap_len--]; \ pqdownheap(s, tree, SMALLEST); \ } /* =========================================================================== * Compares to subtrees, using the tree depth as tie breaker when * the subtrees have equal frequency. This minimizes the worst case length. */ #define smaller(tree, n, m, depth) \ (tree[n].Freq < tree[m].Freq || \ (tree[n].Freq == tree[m].Freq && depth[n] <= depth[m])) /* =========================================================================== * Restore the heap property by moving down the tree starting at node k, * exchanging a node with the smallest of its two sons if necessary, stopping * when the heap property is re-established (each father smaller than its * two sons). */ local void pqdownheap(s, tree, k) deflate_state *s; ct_data *tree; /* the tree to restore */ int k; /* node to move down */ { int v = s->heap[k]; int j = k << 1; /* left son of k */ while (j <= s->heap_len) { /* Set j to the smallest of the two sons: */ if (j < s->heap_len && smaller(tree, s->heap[j+1], s->heap[j], s->depth)) { j++; } /* Exit if v is smaller than both sons */ if (smaller(tree, v, s->heap[j], s->depth)) break; /* Exchange v with the smallest son */ s->heap[k] = s->heap[j]; k = j; /* And continue down the tree, setting j to the left son of k */ j <<= 1; } s->heap[k] = v; } /* =========================================================================== * Compute the optimal bit lengths for a tree and update the total bit length * for the current block. * IN assertion: the fields freq and dad are set, heap[heap_max] and * above are the tree nodes sorted by increasing frequency. * OUT assertions: the field len is set to the optimal bit length, the * array bl_count contains the frequencies for each bit length. * The length opt_len is updated; static_len is also updated if stree is * not null. */ local void gen_bitlen(s, desc) deflate_state *s; tree_desc *desc; /* the tree descriptor */ { ct_data *tree = desc->dyn_tree; int max_code = desc->max_code; const ct_data *stree = desc->stat_desc->static_tree; const intf *extra = desc->stat_desc->extra_bits; int base = desc->stat_desc->extra_base; int max_length = desc->stat_desc->max_length; int h; /* heap index */ int n, m; /* iterate over the tree elements */ int bits; /* bit length */ int xbits; /* extra bits */ ush f; /* frequency */ int overflow = 0; /* number of elements with bit length too large */ for (bits = 0; bits <= MAX_BITS; bits++) s->bl_count[bits] = 0; /* In a first pass, compute the optimal bit lengths (which may * overflow in the case of the bit length tree). */ tree[s->heap[s->heap_max]].Len = 0; /* root of the heap */ for (h = s->heap_max+1; h < HEAP_SIZE; h++) { n = s->heap[h]; bits = tree[tree[n].Dad].Len + 1; if (bits > max_length) bits = max_length, overflow++; tree[n].Len = (ush)bits; /* We overwrite tree[n].Dad which is no longer needed */ if (n > max_code) continue; /* not a leaf node */ s->bl_count[bits]++; xbits = 0; if (n >= base) xbits = extra[n-base]; f = tree[n].Freq; s->opt_len += (ulg)f * (bits + xbits); if (stree) s->static_len += (ulg)f * (stree[n].Len + xbits); } if (overflow == 0) return; Trace((stderr,"\nbit length overflow\n")); /* This happens for example on obj2 and pic of the Calgary corpus */ /* Find the first bit length which could increase: */ do { bits = max_length-1; while (s->bl_count[bits] == 0) bits--; s->bl_count[bits]--; /* move one leaf down the tree */ s->bl_count[bits+1] += 2; /* move one overflow item as its brother */ s->bl_count[max_length]--; /* The brother of the overflow item also moves one step up, * but this does not affect bl_count[max_length] */ overflow -= 2; } while (overflow > 0); /* Now recompute all bit lengths, scanning in increasing frequency. * h is still equal to HEAP_SIZE. (It is simpler to reconstruct all * lengths instead of fixing only the wrong ones. This idea is taken * from 'ar' written by Haruhiko Okumura.) */ for (bits = max_length; bits != 0; bits--) { n = s->bl_count[bits]; while (n != 0) { m = s->heap[--h]; if (m > max_code) continue; if ((unsigned) tree[m].Len != (unsigned) bits) { Trace((stderr,"code %d bits %d->%d\n", m, tree[m].Len, bits)); s->opt_len += ((long)bits - (long)tree[m].Len) *(long)tree[m].Freq; tree[m].Len = (ush)bits; } n--; } } } /* =========================================================================== * Generate the codes for a given tree and bit counts (which need not be * optimal). * IN assertion: the array bl_count contains the bit length statistics for * the given tree and the field len is set for all tree elements. * OUT assertion: the field code is set for all tree elements of non * zero code length. */ local void gen_codes (tree, max_code, bl_count) ct_data *tree; /* the tree to decorate */ int max_code; /* largest code with non zero frequency */ ushf *bl_count; /* number of codes at each bit length */ { ush next_code[MAX_BITS+1]; /* next code value for each bit length */ ush code = 0; /* running code value */ int bits; /* bit index */ int n; /* code index */ /* The distribution counts are first used to generate the code values * without bit reversal. */ for (bits = 1; bits <= MAX_BITS; bits++) { next_code[bits] = code = (code + bl_count[bits-1]) << 1; } /* Check that the bit counts in bl_count are consistent. The last code * must be all ones. */ Assert (code + bl_count[MAX_BITS]-1 == (1<dyn_tree; const ct_data *stree = desc->stat_desc->static_tree; int elems = desc->stat_desc->elems; int n, m; /* iterate over heap elements */ int max_code = -1; /* largest code with non zero frequency */ int node; /* new node being created */ /* Construct the initial heap, with least frequent element in * heap[SMALLEST]. The sons of heap[n] are heap[2*n] and heap[2*n+1]. * heap[0] is not used. */ s->heap_len = 0, s->heap_max = HEAP_SIZE; for (n = 0; n < elems; n++) { if (tree[n].Freq != 0) { s->heap[++(s->heap_len)] = max_code = n; s->depth[n] = 0; } else { tree[n].Len = 0; } } /* The pkzip format requires that at least one distance code exists, * and that at least one bit should be sent even if there is only one * possible code. So to avoid special checks later on we force at least * two codes of non zero frequency. */ while (s->heap_len < 2) { node = s->heap[++(s->heap_len)] = (max_code < 2 ? ++max_code : 0); tree[node].Freq = 1; s->depth[node] = 0; s->opt_len--; if (stree) s->static_len -= stree[node].Len; /* node is 0 or 1 so it does not have extra bits */ } desc->max_code = max_code; /* The elements heap[heap_len/2+1 .. heap_len] are leaves of the tree, * establish sub-heaps of increasing lengths: */ for (n = s->heap_len/2; n >= 1; n--) pqdownheap(s, tree, n); /* Construct the Huffman tree by repeatedly combining the least two * frequent nodes. */ node = elems; /* next internal node of the tree */ do { pqremove(s, tree, n); /* n = node of least frequency */ m = s->heap[SMALLEST]; /* m = node of next least frequency */ s->heap[--(s->heap_max)] = n; /* keep the nodes sorted by frequency */ s->heap[--(s->heap_max)] = m; /* Create a new node father of n and m */ tree[node].Freq = tree[n].Freq + tree[m].Freq; s->depth[node] = (uch)((s->depth[n] >= s->depth[m] ? s->depth[n] : s->depth[m]) + 1); tree[n].Dad = tree[m].Dad = (ush)node; #ifdef DUMP_BL_TREE if (tree == s->bl_tree) { fprintf(stderr,"\nnode %d(%d), sons %d(%d) %d(%d)", node, tree[node].Freq, n, tree[n].Freq, m, tree[m].Freq); } #endif /* and insert the new node in the heap */ s->heap[SMALLEST] = node++; pqdownheap(s, tree, SMALLEST); } while (s->heap_len >= 2); s->heap[--(s->heap_max)] = s->heap[SMALLEST]; /* At this point, the fields freq and dad are set. We can now * generate the bit lengths. */ gen_bitlen(s, (tree_desc *)desc); /* The field len is now set, we can generate the bit codes */ gen_codes ((ct_data *)tree, max_code, s->bl_count); } /* =========================================================================== * Scan a literal or distance tree to determine the frequencies of the codes * in the bit length tree. */ local void scan_tree (s, tree, max_code) deflate_state *s; ct_data *tree; /* the tree to be scanned */ int max_code; /* and its largest code of non zero frequency */ { int n; /* iterates over all tree elements */ int prevlen = -1; /* last emitted length */ int curlen; /* length of current code */ int nextlen = tree[0].Len; /* length of next code */ int count = 0; /* repeat count of the current code */ int max_count = 7; /* max repeat count */ int min_count = 4; /* min repeat count */ if (nextlen == 0) max_count = 138, min_count = 3; tree[max_code+1].Len = (ush)0xffff; /* guard */ for (n = 0; n <= max_code; n++) { curlen = nextlen; nextlen = tree[n+1].Len; if (++count < max_count && curlen == nextlen) { continue; } else if (count < min_count) { s->bl_tree[curlen].Freq += count; } else if (curlen != 0) { if (curlen != prevlen) s->bl_tree[curlen].Freq++; s->bl_tree[REP_3_6].Freq++; } else if (count <= 10) { s->bl_tree[REPZ_3_10].Freq++; } else { s->bl_tree[REPZ_11_138].Freq++; } count = 0; prevlen = curlen; if (nextlen == 0) { max_count = 138, min_count = 3; } else if (curlen == nextlen) { max_count = 6, min_count = 3; } else { max_count = 7, min_count = 4; } } } /* =========================================================================== * Send a literal or distance tree in compressed form, using the codes in * bl_tree. */ local void send_tree (s, tree, max_code) deflate_state *s; ct_data *tree; /* the tree to be scanned */ int max_code; /* and its largest code of non zero frequency */ { int n; /* iterates over all tree elements */ int prevlen = -1; /* last emitted length */ int curlen; /* length of current code */ int nextlen = tree[0].Len; /* length of next code */ int count = 0; /* repeat count of the current code */ int max_count = 7; /* max repeat count */ int min_count = 4; /* min repeat count */ /* tree[max_code+1].Len = -1; */ /* guard already set */ if (nextlen == 0) max_count = 138, min_count = 3; for (n = 0; n <= max_code; n++) { curlen = nextlen; nextlen = tree[n+1].Len; if (++count < max_count && curlen == nextlen) { continue; } else if (count < min_count) { do { send_code(s, curlen, s->bl_tree); } while (--count != 0); } else if (curlen != 0) { if (curlen != prevlen) { send_code(s, curlen, s->bl_tree); count--; } Assert(count >= 3 && count <= 6, " 3_6?"); send_code(s, REP_3_6, s->bl_tree); send_bits(s, count-3, 2); } else if (count <= 10) { send_code(s, REPZ_3_10, s->bl_tree); send_bits(s, count-3, 3); } else { send_code(s, REPZ_11_138, s->bl_tree); send_bits(s, count-11, 7); } count = 0; prevlen = curlen; if (nextlen == 0) { max_count = 138, min_count = 3; } else if (curlen == nextlen) { max_count = 6, min_count = 3; } else { max_count = 7, min_count = 4; } } } /* =========================================================================== * Construct the Huffman tree for the bit lengths and return the index in * bl_order of the last bit length code to send. */ local int build_bl_tree(s) deflate_state *s; { int max_blindex; /* index of last bit length code of non zero freq */ /* Determine the bit length frequencies for literal and distance trees */ scan_tree(s, (ct_data *)s->dyn_ltree, s->l_desc.max_code); scan_tree(s, (ct_data *)s->dyn_dtree, s->d_desc.max_code); /* Build the bit length tree: */ build_tree(s, (tree_desc *)(&(s->bl_desc))); /* opt_len now includes the length of the tree representations, except * the lengths of the bit lengths codes and the 5+5+4 bits for the counts. */ /* Determine the number of bit length codes to send. The pkzip format * requires that at least 4 bit length codes be sent. (appnote.txt says * 3 but the actual value used is 4.) */ for (max_blindex = BL_CODES-1; max_blindex >= 3; max_blindex--) { if (s->bl_tree[bl_order[max_blindex]].Len != 0) break; } /* Update opt_len to include the bit length tree and counts */ s->opt_len += 3*(max_blindex+1) + 5+5+4; Tracev((stderr, "\ndyn trees: dyn %ld, stat %ld", s->opt_len, s->static_len)); return max_blindex; } /* =========================================================================== * Send the header for a block using dynamic Huffman trees: the counts, the * lengths of the bit length codes, the literal tree and the distance tree. * IN assertion: lcodes >= 257, dcodes >= 1, blcodes >= 4. */ local void send_all_trees(s, lcodes, dcodes, blcodes) deflate_state *s; int lcodes, dcodes, blcodes; /* number of codes for each tree */ { int rank; /* index in bl_order */ Assert (lcodes >= 257 && dcodes >= 1 && blcodes >= 4, "not enough codes"); Assert (lcodes <= L_CODES && dcodes <= D_CODES && blcodes <= BL_CODES, "too many codes"); Tracev((stderr, "\nbl counts: ")); send_bits(s, lcodes-257, 5); /* not +255 as stated in appnote.txt */ send_bits(s, dcodes-1, 5); send_bits(s, blcodes-4, 4); /* not -3 as stated in appnote.txt */ for (rank = 0; rank < blcodes; rank++) { Tracev((stderr, "\nbl code %2d ", bl_order[rank])); send_bits(s, s->bl_tree[bl_order[rank]].Len, 3); } Tracev((stderr, "\nbl tree: sent %ld", s->bits_sent)); send_tree(s, (ct_data *)s->dyn_ltree, lcodes-1); /* literal tree */ Tracev((stderr, "\nlit tree: sent %ld", s->bits_sent)); send_tree(s, (ct_data *)s->dyn_dtree, dcodes-1); /* distance tree */ Tracev((stderr, "\ndist tree: sent %ld", s->bits_sent)); } /* =========================================================================== * Send a stored block */ void ZLIB_INTERNAL _tr_stored_block(s, buf, stored_len, last) deflate_state *s; charf *buf; /* input block */ ulg stored_len; /* length of input block */ int last; /* one if this is the last block for a file */ { send_bits(s, (STORED_BLOCK<<1)+last, 3); /* send block type */ #ifdef DEBUG s->compressed_len = (s->compressed_len + 3 + 7) & (ulg)~7L; s->compressed_len += (stored_len + 4) << 3; #endif copy_block(s, buf, (unsigned)stored_len, 1); /* with header */ } /* =========================================================================== * Send one empty static block to give enough lookahead for inflate. * This takes 10 bits, of which 7 may remain in the bit buffer. * The current inflate code requires 9 bits of lookahead. If the * last two codes for the previous block (real code plus EOB) were coded * on 5 bits or less, inflate may have only 5+3 bits of lookahead to decode * the last real code. In this case we send two empty static blocks instead * of one. (There are no problems if the previous block is stored or fixed.) * To simplify the code, we assume the worst case of last real code encoded * on one bit only. */ void ZLIB_INTERNAL _tr_align(s) deflate_state *s; { send_bits(s, STATIC_TREES<<1, 3); send_code(s, END_BLOCK, static_ltree); #ifdef DEBUG s->compressed_len += 10L; /* 3 for block type, 7 for EOB */ #endif bi_flush(s); /* Of the 10 bits for the empty block, we have already sent * (10 - bi_valid) bits. The lookahead for the last real code (before * the EOB of the previous block) was thus at least one plus the length * of the EOB plus what we have just sent of the empty static block. */ if (1 + s->last_eob_len + 10 - s->bi_valid < 9) { send_bits(s, STATIC_TREES<<1, 3); send_code(s, END_BLOCK, static_ltree); #ifdef DEBUG s->compressed_len += 10L; #endif bi_flush(s); } s->last_eob_len = 7; } /* =========================================================================== * Determine the best encoding for the current block: dynamic trees, static * trees or store, and output the encoded block to the zip file. */ void ZLIB_INTERNAL _tr_flush_block(s, buf, stored_len, last) deflate_state *s; charf *buf; /* input block, or NULL if too old */ ulg stored_len; /* length of input block */ int last; /* one if this is the last block for a file */ { ulg opt_lenb, static_lenb; /* opt_len and static_len in bytes */ int max_blindex = 0; /* index of last bit length code of non zero freq */ /* Build the Huffman trees unless a stored block is forced */ if (s->level > 0) { /* Check if the file is binary or text */ if (s->strm->data_type == Z_UNKNOWN) s->strm->data_type = detect_data_type(s); /* Construct the literal and distance trees */ build_tree(s, (tree_desc *)(&(s->l_desc))); Tracev((stderr, "\nlit data: dyn %ld, stat %ld", s->opt_len, s->static_len)); build_tree(s, (tree_desc *)(&(s->d_desc))); Tracev((stderr, "\ndist data: dyn %ld, stat %ld", s->opt_len, s->static_len)); /* At this point, opt_len and static_len are the total bit lengths of * the compressed block data, excluding the tree representations. */ /* Build the bit length tree for the above two trees, and get the index * in bl_order of the last bit length code to send. */ max_blindex = build_bl_tree(s); /* Determine the best encoding. Compute the block lengths in bytes. */ opt_lenb = (s->opt_len+3+7)>>3; static_lenb = (s->static_len+3+7)>>3; Tracev((stderr, "\nopt %lu(%lu) stat %lu(%lu) stored %lu lit %u ", opt_lenb, s->opt_len, static_lenb, s->static_len, stored_len, s->last_lit)); if (static_lenb <= opt_lenb) opt_lenb = static_lenb; } else { Assert(buf != (char*)0, "lost buf"); opt_lenb = static_lenb = stored_len + 5; /* force a stored block */ } #ifdef FORCE_STORED if (buf != (char*)0) { /* force stored block */ #else if (stored_len+4 <= opt_lenb && buf != (char*)0) { /* 4: two words for the lengths */ #endif /* The test buf != NULL is only necessary if LIT_BUFSIZE > WSIZE. * Otherwise we can't have processed more than WSIZE input bytes since * the last block flush, because compression would have been * successful. If LIT_BUFSIZE <= WSIZE, it is never too late to * transform a block into a stored block. */ _tr_stored_block(s, buf, stored_len, last); #ifdef FORCE_STATIC } else if (static_lenb >= 0) { /* force static trees */ #else } else if (s->strategy == Z_FIXED || static_lenb == opt_lenb) { #endif send_bits(s, (STATIC_TREES<<1)+last, 3); compress_block(s, (ct_data *)static_ltree, (ct_data *)static_dtree); #ifdef DEBUG s->compressed_len += 3 + s->static_len; #endif } else { send_bits(s, (DYN_TREES<<1)+last, 3); send_all_trees(s, s->l_desc.max_code+1, s->d_desc.max_code+1, max_blindex+1); compress_block(s, (ct_data *)s->dyn_ltree, (ct_data *)s->dyn_dtree); #ifdef DEBUG s->compressed_len += 3 + s->opt_len; #endif } Assert (s->compressed_len == s->bits_sent, "bad compressed size"); /* The above check is made mod 2^32, for files larger than 512 MB * and uLong implemented on 32 bits. */ init_block(s); if (last) { bi_windup(s); #ifdef DEBUG s->compressed_len += 7; /* align on byte boundary */ #endif } Tracev((stderr,"\ncomprlen %lu(%lu) ", s->compressed_len>>3, s->compressed_len-7*last)); } /* =========================================================================== * Save the match info and tally the frequency counts. Return true if * the current block must be flushed. */ int ZLIB_INTERNAL _tr_tally (s, dist, lc) deflate_state *s; unsigned dist; /* distance of matched string */ unsigned lc; /* match length-MIN_MATCH or unmatched char (if dist==0) */ { s->d_buf[s->last_lit] = (ush)dist; s->l_buf[s->last_lit++] = (uch)lc; if (dist == 0) { /* lc is the unmatched char */ s->dyn_ltree[lc].Freq++; } else { s->matches++; /* Here, lc is the match length - MIN_MATCH */ dist--; /* dist = match distance - 1 */ Assert((ush)dist < (ush)MAX_DIST(s) && (ush)lc <= (ush)(MAX_MATCH-MIN_MATCH) && (ush)d_code(dist) < (ush)D_CODES, "_tr_tally: bad match"); s->dyn_ltree[_length_code[lc]+LITERALS+1].Freq++; s->dyn_dtree[d_code(dist)].Freq++; } #ifdef TRUNCATE_BLOCK /* Try to guess if it is profitable to stop the current block here */ if ((s->last_lit & 0x1fff) == 0 && s->level > 2) { /* Compute an upper bound for the compressed length */ ulg out_length = (ulg)s->last_lit*8L; ulg in_length = (ulg)((long)s->strstart - s->block_start); int dcode; for (dcode = 0; dcode < D_CODES; dcode++) { out_length += (ulg)s->dyn_dtree[dcode].Freq * (5L+extra_dbits[dcode]); } out_length >>= 3; Tracev((stderr,"\nlast_lit %u, in %ld, out ~%ld(%ld%%) ", s->last_lit, in_length, out_length, 100L - out_length*100L/in_length)); if (s->matches < s->last_lit/2 && out_length < in_length/2) return 1; } #endif return (s->last_lit == s->lit_bufsize-1); /* We avoid equality with lit_bufsize because of wraparound at 64K * on 16 bit machines and because stored blocks are restricted to * 64K-1 bytes. */ } /* =========================================================================== * Send the block data compressed using the given Huffman trees */ local void compress_block(s, ltree, dtree) deflate_state *s; ct_data *ltree; /* literal tree */ ct_data *dtree; /* distance tree */ { unsigned dist; /* distance of matched string */ int lc; /* match length or unmatched char (if dist == 0) */ unsigned lx = 0; /* running index in l_buf */ unsigned code; /* the code to send */ int extra; /* number of extra bits to send */ if (s->last_lit != 0) do { dist = s->d_buf[lx]; lc = s->l_buf[lx++]; if (dist == 0) { send_code(s, lc, ltree); /* send a literal byte */ Tracecv(isgraph(lc), (stderr," '%c' ", lc)); } else { /* Here, lc is the match length - MIN_MATCH */ code = _length_code[lc]; send_code(s, code+LITERALS+1, ltree); /* send the length code */ extra = extra_lbits[code]; if (extra != 0) { lc -= base_length[code]; send_bits(s, lc, extra); /* send the extra length bits */ } dist--; /* dist is now the match distance - 1 */ code = d_code(dist); Assert (code < D_CODES, "bad d_code"); send_code(s, code, dtree); /* send the distance code */ extra = extra_dbits[code]; if (extra != 0) { dist -= base_dist[code]; send_bits(s, dist, extra); /* send the extra distance bits */ } } /* literal or match pair ? */ /* Check that the overlay between pending_buf and d_buf+l_buf is ok: */ Assert((uInt)(s->pending) < s->lit_bufsize + 2*lx, "pendingBuf overflow"); } while (lx < s->last_lit); send_code(s, END_BLOCK, ltree); s->last_eob_len = ltree[END_BLOCK].Len; } /* =========================================================================== * Check if the data type is TEXT or BINARY, using the following algorithm: * - TEXT if the two conditions below are satisfied: * a) There are no non-portable control characters belonging to the * "black list" (0..6, 14..25, 28..31). * b) There is at least one printable character belonging to the * "white list" (9 {TAB}, 10 {LF}, 13 {CR}, 32..255). * - BINARY otherwise. * - The following partially-portable control characters form a * "gray list" that is ignored in this detection algorithm: * (7 {BEL}, 8 {BS}, 11 {VT}, 12 {FF}, 26 {SUB}, 27 {ESC}). * IN assertion: the fields Freq of dyn_ltree are set. */ local int detect_data_type(s) deflate_state *s; { /* black_mask is the bit mask of black-listed bytes * set bits 0..6, 14..25, and 28..31 * 0xf3ffc07f = binary 11110011111111111100000001111111 */ unsigned long black_mask = 0xf3ffc07fUL; int n; /* Check for non-textual ("black-listed") bytes. */ for (n = 0; n <= 31; n++, black_mask >>= 1) if ((black_mask & 1) && (s->dyn_ltree[n].Freq != 0)) return Z_BINARY; /* Check for textual ("white-listed") bytes. */ if (s->dyn_ltree[9].Freq != 0 || s->dyn_ltree[10].Freq != 0 || s->dyn_ltree[13].Freq != 0) return Z_TEXT; for (n = 32; n < LITERALS; n++) if (s->dyn_ltree[n].Freq != 0) return Z_TEXT; /* There are no "black-listed" or "white-listed" bytes: * this stream either is empty or has tolerated ("gray-listed") bytes only. */ return Z_BINARY; } /* =========================================================================== * Reverse the first len bits of a code, using straightforward code (a faster * method would use a table) * IN assertion: 1 <= len <= 15 */ local unsigned bi_reverse(code, len) unsigned code; /* the value to invert */ int len; /* its bit length */ { register unsigned res = 0; do { res |= code & 1; code >>= 1, res <<= 1; } while (--len > 0); return res >> 1; } /* =========================================================================== * Flush the bit buffer, keeping at most 7 bits in it. */ local void bi_flush(s) deflate_state *s; { if (s->bi_valid == 16) { put_short(s, s->bi_buf); s->bi_buf = 0; s->bi_valid = 0; } else if (s->bi_valid >= 8) { put_byte(s, (Byte)s->bi_buf); s->bi_buf >>= 8; s->bi_valid -= 8; } } /* =========================================================================== * Flush the bit buffer and align the output on a byte boundary */ local void bi_windup(s) deflate_state *s; { if (s->bi_valid > 8) { put_short(s, s->bi_buf); } else if (s->bi_valid > 0) { put_byte(s, (Byte)s->bi_buf); } s->bi_buf = 0; s->bi_valid = 0; #ifdef DEBUG s->bits_sent = (s->bits_sent+7) & ~7; #endif } /* =========================================================================== * Copy a stored block, storing first the length and its * one's complement if requested. */ local void copy_block(s, buf, len, header) deflate_state *s; charf *buf; /* the input data */ unsigned len; /* its length */ int header; /* true if block header must be written */ { bi_windup(s); /* align on byte boundary */ s->last_eob_len = 8; /* enough lookahead for inflate */ if (header) { put_short(s, (ush)len); put_short(s, (ush)~len); #ifdef DEBUG s->bits_sent += 2*16; #endif } #ifdef DEBUG s->bits_sent += (ulg)len<<3; #endif while (len--) { put_byte(s, *buf++); } } healpy-1.8.1/cfitsio/zlib/zcompress.c0000654000175000017530000004230312272000775020210 0ustar zoncaplanck00000000000000#include #include #include #include #include "zlib.h" #define GZBUFSIZE 115200 /* 40 FITS blocks */ #define BUFFINCR 28800 /* 10 FITS blocks */ /* prototype for the following functions */ int uncompress2mem(char *filename, FILE *diskfile, char **buffptr, size_t *buffsize, void *(*mem_realloc)(void *p, size_t newsize), size_t *filesize, int *status); int uncompress2mem_from_mem( char *inmemptr, size_t inmemsize, char **buffptr, size_t *buffsize, void *(*mem_realloc)(void *p, size_t newsize), size_t *filesize, int *status); int uncompress2file(char *filename, FILE *indiskfile, FILE *outdiskfile, int *status); int compress2mem_from_mem( char *inmemptr, size_t inmemsize, char **buffptr, size_t *buffsize, void *(*mem_realloc)(void *p, size_t newsize), size_t *filesize, int *status); int compress2file_from_mem( char *inmemptr, size_t inmemsize, FILE *outdiskfile, size_t *filesize, /* O - size of file, in bytes */ int *status); /*--------------------------------------------------------------------------*/ int uncompress2mem(char *filename, /* name of input file */ FILE *diskfile, /* I - file pointer */ char **buffptr, /* IO - memory pointer */ size_t *buffsize, /* IO - size of buffer, in bytes */ void *(*mem_realloc)(void *p, size_t newsize), /* function */ size_t *filesize, /* O - size of file, in bytes */ int *status) /* IO - error status */ /* Uncompress the disk file into memory. Fill whatever amount of memory has already been allocated, then realloc more memory, using the supplied input function, if necessary. */ { int err, len; char *filebuff; z_stream d_stream; /* decompression stream */ if (*status > 0) return(*status); /* Allocate memory to hold compressed bytes read from the file. */ filebuff = (char*)malloc(GZBUFSIZE); if (!filebuff) return(*status = 113); /* memory error */ d_stream.zalloc = (alloc_func)0; d_stream.zfree = (free_func)0; d_stream.opaque = (voidpf)0; d_stream.next_out = (unsigned char*) *buffptr; d_stream.avail_out = *buffsize; /* Initialize the decompression. The argument (15+16) tells the decompressor that we are to use the gzip algorithm */ err = inflateInit2(&d_stream, (15+16)); if (err != Z_OK) return(*status = 414); /* loop through the file, reading a buffer and uncompressing it */ for (;;) { len = fread(filebuff, 1, GZBUFSIZE, diskfile); if (ferror(diskfile)) { inflateEnd(&d_stream); free(filebuff); return(*status = 414); } if (len == 0) break; /* no more data */ d_stream.next_in = (unsigned char*)filebuff; d_stream.avail_in = len; for (;;) { /* uncompress as much of the input as will fit in the output */ err = inflate(&d_stream, Z_NO_FLUSH); if (err == Z_STREAM_END ) { /* We reached the end of the input */ break; } else if (err == Z_OK ) { if (!d_stream.avail_in) break; /* need more input */ /* need more space in output buffer */ if (mem_realloc) { *buffptr = mem_realloc(*buffptr,*buffsize + BUFFINCR); if (*buffptr == NULL){ inflateEnd(&d_stream); free(filebuff); return(*status = 414); /* memory allocation failed */ } d_stream.avail_out = BUFFINCR; d_stream.next_out = (unsigned char*) (*buffptr + *buffsize); *buffsize = *buffsize + BUFFINCR; } else { /* error: no realloc function available */ inflateEnd(&d_stream); free(filebuff); return(*status = 414); } } else { /* some other error */ inflateEnd(&d_stream); free(filebuff); return(*status = 414); } } if (feof(diskfile)) break; d_stream.next_out = (unsigned char*) (*buffptr + d_stream.total_out); d_stream.avail_out = *buffsize - d_stream.total_out; } /* Set the output file size to be the total output data */ *filesize = d_stream.total_out; free(filebuff); /* free temporary output data buffer */ err = inflateEnd(&d_stream); /* End the decompression */ if (err != Z_OK) return(*status = 414); return(*status); } /*--------------------------------------------------------------------------*/ int uncompress2mem_from_mem( char *inmemptr, /* I - memory pointer to compressed bytes */ size_t inmemsize, /* I - size of input compressed file */ char **buffptr, /* IO - memory pointer */ size_t *buffsize, /* IO - size of buffer, in bytes */ void *(*mem_realloc)(void *p, size_t newsize), /* function */ size_t *filesize, /* O - size of file, in bytes */ int *status) /* IO - error status */ /* Uncompress the file in memory into memory. Fill whatever amount of memory has already been allocated, then realloc more memory, using the supplied input function, if necessary. */ { int err; z_stream d_stream; /* decompression stream */ if (*status > 0) return(*status); d_stream.zalloc = (alloc_func)0; d_stream.zfree = (free_func)0; d_stream.opaque = (voidpf)0; /* Initialize the decompression. The argument (15+16) tells the decompressor that we are to use the gzip algorithm */ err = inflateInit2(&d_stream, (15+16)); if (err != Z_OK) return(*status = 414); d_stream.next_in = (unsigned char*)inmemptr; d_stream.avail_in = inmemsize; d_stream.next_out = (unsigned char*) *buffptr; d_stream.avail_out = *buffsize; for (;;) { /* uncompress as much of the input as will fit in the output */ err = inflate(&d_stream, Z_NO_FLUSH); if (err == Z_STREAM_END) { /* We reached the end of the input */ break; } else if (err == Z_OK ) { /* need more space in output buffer */ if (mem_realloc) { *buffptr = mem_realloc(*buffptr,*buffsize + BUFFINCR); if (*buffptr == NULL){ inflateEnd(&d_stream); return(*status = 414); /* memory allocation failed */ } d_stream.avail_out = BUFFINCR; d_stream.next_out = (unsigned char*) (*buffptr + *buffsize); *buffsize = *buffsize + BUFFINCR; } else { /* error: no realloc function available */ inflateEnd(&d_stream); return(*status = 414); } } else { /* some other error */ inflateEnd(&d_stream); return(*status = 414); } } /* Set the output file size to be the total output data */ if (filesize) *filesize = d_stream.total_out; /* End the decompression */ err = inflateEnd(&d_stream); if (err != Z_OK) return(*status = 414); return(*status); } /*--------------------------------------------------------------------------*/ int uncompress2file(char *filename, /* name of input file */ FILE *indiskfile, /* I - input file pointer */ FILE *outdiskfile, /* I - output file pointer */ int *status) /* IO - error status */ /* Uncompress the file into another file. */ { int err, len; unsigned long bytes_out = 0; char *infilebuff, *outfilebuff; z_stream d_stream; /* decompression stream */ if (*status > 0) return(*status); /* Allocate buffers to hold compressed and uncompressed */ infilebuff = (char*)malloc(GZBUFSIZE); if (!infilebuff) return(*status = 113); /* memory error */ outfilebuff = (char*)malloc(GZBUFSIZE); if (!outfilebuff) return(*status = 113); /* memory error */ d_stream.zalloc = (alloc_func)0; d_stream.zfree = (free_func)0; d_stream.opaque = (voidpf)0; d_stream.next_out = (unsigned char*) outfilebuff; d_stream.avail_out = GZBUFSIZE; /* Initialize the decompression. The argument (15+16) tells the decompressor that we are to use the gzip algorithm */ err = inflateInit2(&d_stream, (15+16)); if (err != Z_OK) return(*status = 414); /* loop through the file, reading a buffer and uncompressing it */ for (;;) { len = fread(infilebuff, 1, GZBUFSIZE, indiskfile); if (ferror(indiskfile)) { inflateEnd(&d_stream); free(infilebuff); free(outfilebuff); return(*status = 414); } if (len == 0) break; /* no more data */ d_stream.next_in = (unsigned char*)infilebuff; d_stream.avail_in = len; for (;;) { /* uncompress as much of the input as will fit in the output */ err = inflate(&d_stream, Z_NO_FLUSH); if (err == Z_STREAM_END ) { /* We reached the end of the input */ break; } else if (err == Z_OK ) { if (!d_stream.avail_in) break; /* need more input */ /* flush out the full output buffer */ if ((int)fwrite(outfilebuff, 1, GZBUFSIZE, outdiskfile) != GZBUFSIZE) { inflateEnd(&d_stream); free(infilebuff); free(outfilebuff); return(*status = 414); } bytes_out += GZBUFSIZE; d_stream.next_out = (unsigned char*) outfilebuff; d_stream.avail_out = GZBUFSIZE; } else { /* some other error */ inflateEnd(&d_stream); free(infilebuff); free(outfilebuff); return(*status = 414); } } if (feof(indiskfile)) break; } /* write out any remaining bytes in the buffer */ if (d_stream.total_out > bytes_out) { if ((int)fwrite(outfilebuff, 1, (d_stream.total_out - bytes_out), outdiskfile) != (d_stream.total_out - bytes_out)) { inflateEnd(&d_stream); free(infilebuff); free(outfilebuff); return(*status = 414); } } free(infilebuff); /* free temporary output data buffer */ free(outfilebuff); /* free temporary output data buffer */ err = inflateEnd(&d_stream); /* End the decompression */ if (err != Z_OK) return(*status = 414); return(*status); } /*--------------------------------------------------------------------------*/ int compress2mem_from_mem( char *inmemptr, /* I - memory pointer to uncompressed bytes */ size_t inmemsize, /* I - size of input uncompressed file */ char **buffptr, /* IO - memory pointer for compressed file */ size_t *buffsize, /* IO - size of buffer, in bytes */ void *(*mem_realloc)(void *p, size_t newsize), /* function */ size_t *filesize, /* O - size of file, in bytes */ int *status) /* IO - error status */ /* Compress the file into memory. Fill whatever amount of memory has already been allocated, then realloc more memory, using the supplied input function, if necessary. */ { int err; z_stream c_stream; /* compression stream */ if (*status > 0) return(*status); c_stream.zalloc = (alloc_func)0; c_stream.zfree = (free_func)0; c_stream.opaque = (voidpf)0; /* Initialize the compression. The argument (15+16) tells the compressor that we are to use the gzip algorythm. Also use Z_BEST_SPEED for maximum speed with very minor loss in compression factor. */ err = deflateInit2(&c_stream, Z_BEST_SPEED, Z_DEFLATED, (15+16), 8, Z_DEFAULT_STRATEGY); if (err != Z_OK) return(*status = 413); c_stream.next_in = (unsigned char*)inmemptr; c_stream.avail_in = inmemsize; c_stream.next_out = (unsigned char*) *buffptr; c_stream.avail_out = *buffsize; for (;;) { /* compress as much of the input as will fit in the output */ err = deflate(&c_stream, Z_FINISH); if (err == Z_STREAM_END) { /* We reached the end of the input */ break; } else if (err == Z_OK ) { /* need more space in output buffer */ if (mem_realloc) { *buffptr = mem_realloc(*buffptr,*buffsize + BUFFINCR); if (*buffptr == NULL){ deflateEnd(&c_stream); return(*status = 413); /* memory allocation failed */ } c_stream.avail_out = BUFFINCR; c_stream.next_out = (unsigned char*) (*buffptr + *buffsize); *buffsize = *buffsize + BUFFINCR; } else { /* error: no realloc function available */ deflateEnd(&c_stream); return(*status = 413); } } else { /* some other error */ deflateEnd(&c_stream); return(*status = 413); } } /* Set the output file size to be the total output data */ if (filesize) *filesize = c_stream.total_out; /* End the compression */ err = deflateEnd(&c_stream); if (err != Z_OK) return(*status = 413); return(*status); } /*--------------------------------------------------------------------------*/ int compress2file_from_mem( char *inmemptr, /* I - memory pointer to uncompressed bytes */ size_t inmemsize, /* I - size of input uncompressed file */ FILE *outdiskfile, size_t *filesize, /* O - size of file, in bytes */ int *status) /* Compress the memory file into disk file. */ { int err; unsigned long bytes_out = 0; char *outfilebuff; z_stream c_stream; /* compression stream */ if (*status > 0) return(*status); /* Allocate buffer to hold compressed bytes */ outfilebuff = (char*)malloc(GZBUFSIZE); if (!outfilebuff) return(*status = 113); /* memory error */ c_stream.zalloc = (alloc_func)0; c_stream.zfree = (free_func)0; c_stream.opaque = (voidpf)0; /* Initialize the compression. The argument (15+16) tells the compressor that we are to use the gzip algorythm. Also use Z_BEST_SPEED for maximum speed with very minor loss in compression factor. */ err = deflateInit2(&c_stream, Z_BEST_SPEED, Z_DEFLATED, (15+16), 8, Z_DEFAULT_STRATEGY); if (err != Z_OK) return(*status = 413); c_stream.next_in = (unsigned char*)inmemptr; c_stream.avail_in = inmemsize; c_stream.next_out = (unsigned char*) outfilebuff; c_stream.avail_out = GZBUFSIZE; for (;;) { /* compress as much of the input as will fit in the output */ err = deflate(&c_stream, Z_FINISH); if (err == Z_STREAM_END) { /* We reached the end of the input */ break; } else if (err == Z_OK ) { /* need more space in output buffer */ /* flush out the full output buffer */ if ((int)fwrite(outfilebuff, 1, GZBUFSIZE, outdiskfile) != GZBUFSIZE) { deflateEnd(&c_stream); free(outfilebuff); return(*status = 413); } bytes_out += GZBUFSIZE; c_stream.next_out = (unsigned char*) outfilebuff; c_stream.avail_out = GZBUFSIZE; } else { /* some other error */ deflateEnd(&c_stream); free(outfilebuff); return(*status = 413); } } /* write out any remaining bytes in the buffer */ if (c_stream.total_out > bytes_out) { if ((int)fwrite(outfilebuff, 1, (c_stream.total_out - bytes_out), outdiskfile) != (c_stream.total_out - bytes_out)) { deflateEnd(&c_stream); free(outfilebuff); return(*status = 413); } } free(outfilebuff); /* free temporary output data buffer */ /* Set the output file size to be the total output data */ if (filesize) *filesize = c_stream.total_out; /* End the compression */ err = deflateEnd(&c_stream); if (err != Z_OK) return(*status = 413); return(*status); } healpy-1.8.1/cfitsio/zlib/adler32.c0000654000175000017530000001164712272000775017426 0ustar zoncaplanck00000000000000/* adler32.c -- compute the Adler-32 checksum of a data stream * Copyright (C) 1995-2007 Mark Adler * For conditions of distribution and use, see copyright notice in zlib.h */ #include "zutil.h" #define local static local uLong adler32_combine_(uLong adler1, uLong adler2, z_off64_t len2); #define BASE 65521UL /* largest prime smaller than 65536 */ #define NMAX 5552 /* NMAX is the largest n such that 255n(n+1)/2 + (n+1)(BASE-1) <= 2^32-1 */ #define DO1(buf,i) {adler += (buf)[i]; sum2 += adler;} #define DO2(buf,i) DO1(buf,i); DO1(buf,i+1); #define DO4(buf,i) DO2(buf,i); DO2(buf,i+2); #define DO8(buf,i) DO4(buf,i); DO4(buf,i+4); #define DO16(buf) DO8(buf,0); DO8(buf,8); /* use NO_DIVIDE if your processor does not do division in hardware */ #ifdef NO_DIVIDE # define MOD(a) \ do { \ if (a >= (BASE << 16)) a -= (BASE << 16); \ if (a >= (BASE << 15)) a -= (BASE << 15); \ if (a >= (BASE << 14)) a -= (BASE << 14); \ if (a >= (BASE << 13)) a -= (BASE << 13); \ if (a >= (BASE << 12)) a -= (BASE << 12); \ if (a >= (BASE << 11)) a -= (BASE << 11); \ if (a >= (BASE << 10)) a -= (BASE << 10); \ if (a >= (BASE << 9)) a -= (BASE << 9); \ if (a >= (BASE << 8)) a -= (BASE << 8); \ if (a >= (BASE << 7)) a -= (BASE << 7); \ if (a >= (BASE << 6)) a -= (BASE << 6); \ if (a >= (BASE << 5)) a -= (BASE << 5); \ if (a >= (BASE << 4)) a -= (BASE << 4); \ if (a >= (BASE << 3)) a -= (BASE << 3); \ if (a >= (BASE << 2)) a -= (BASE << 2); \ if (a >= (BASE << 1)) a -= (BASE << 1); \ if (a >= BASE) a -= BASE; \ } while (0) # define MOD4(a) \ do { \ if (a >= (BASE << 4)) a -= (BASE << 4); \ if (a >= (BASE << 3)) a -= (BASE << 3); \ if (a >= (BASE << 2)) a -= (BASE << 2); \ if (a >= (BASE << 1)) a -= (BASE << 1); \ if (a >= BASE) a -= BASE; \ } while (0) #else # define MOD(a) a %= BASE # define MOD4(a) a %= BASE #endif /* ========================================================================= */ uLong ZEXPORT adler32(adler, buf, len) uLong adler; const Bytef *buf; uInt len; { unsigned long sum2; unsigned n; /* split Adler-32 into component sums */ sum2 = (adler >> 16) & 0xffff; adler &= 0xffff; /* in case user likes doing a byte at a time, keep it fast */ if (len == 1) { adler += buf[0]; if (adler >= BASE) adler -= BASE; sum2 += adler; if (sum2 >= BASE) sum2 -= BASE; return adler | (sum2 << 16); } /* initial Adler-32 value (deferred check for len == 1 speed) */ if (buf == Z_NULL) return 1L; /* in case short lengths are provided, keep it somewhat fast */ if (len < 16) { while (len--) { adler += *buf++; sum2 += adler; } if (adler >= BASE) adler -= BASE; MOD4(sum2); /* only added so many BASE's */ return adler | (sum2 << 16); } /* do length NMAX blocks -- requires just one modulo operation */ while (len >= NMAX) { len -= NMAX; n = NMAX / 16; /* NMAX is divisible by 16 */ do { DO16(buf); /* 16 sums unrolled */ buf += 16; } while (--n); MOD(adler); MOD(sum2); } /* do remaining bytes (less than NMAX, still just one modulo) */ if (len) { /* avoid modulos if none remaining */ while (len >= 16) { len -= 16; DO16(buf); buf += 16; } while (len--) { adler += *buf++; sum2 += adler; } MOD(adler); MOD(sum2); } /* return recombined sums */ return adler | (sum2 << 16); } /* ========================================================================= */ local uLong adler32_combine_(adler1, adler2, len2) uLong adler1; uLong adler2; z_off64_t len2; { unsigned long sum1; unsigned long sum2; unsigned rem; /* the derivation of this formula is left as an exercise for the reader */ rem = (unsigned)(len2 % BASE); sum1 = adler1 & 0xffff; sum2 = rem * sum1; MOD(sum2); sum1 += (adler2 & 0xffff) + BASE - 1; sum2 += ((adler1 >> 16) & 0xffff) + ((adler2 >> 16) & 0xffff) + BASE - rem; if (sum1 >= BASE) sum1 -= BASE; if (sum1 >= BASE) sum1 -= BASE; if (sum2 >= (BASE << 1)) sum2 -= (BASE << 1); if (sum2 >= BASE) sum2 -= BASE; return sum1 | (sum2 << 16); } /* ========================================================================= */ uLong ZEXPORT adler32_combine(adler1, adler2, len2) uLong adler1; uLong adler2; z_off_t len2; { return adler32_combine_(adler1, adler2, len2); } uLong ZEXPORT adler32_combine64(adler1, adler2, len2) uLong adler1; uLong adler2; z_off64_t len2; { return adler32_combine_(adler1, adler2, len2); } healpy-1.8.1/cfitsio/zlib/infback.c0000654000175000017530000005413612272000775017567 0ustar zoncaplanck00000000000000/* infback.c -- inflate using a call-back interface * Copyright (C) 1995-2009 Mark Adler * For conditions of distribution and use, see copyright notice in zlib.h */ /* This code is largely copied from inflate.c. Normally either infback.o or inflate.o would be linked into an application--not both. The interface with inffast.c is retained so that optimized assembler-coded versions of inflate_fast() can be used with either inflate.c or infback.c. */ #include "zutil.h" #include "inftrees.h" #include "inflate.h" #include "inffast.h" /* function prototypes */ local void fixedtables OF((struct inflate_state FAR *state)); /* strm provides memory allocation functions in zalloc and zfree, or Z_NULL to use the library memory allocation functions. windowBits is in the range 8..15, and window is a user-supplied window and output buffer that is 2**windowBits bytes. */ int ZEXPORT inflateBackInit_(strm, windowBits, window, version, stream_size) z_streamp strm; int windowBits; unsigned char FAR *window; const char *version; int stream_size; { struct inflate_state FAR *state; if (version == Z_NULL || version[0] != ZLIB_VERSION[0] || stream_size != (int)(sizeof(z_stream))) return Z_VERSION_ERROR; if (strm == Z_NULL || window == Z_NULL || windowBits < 8 || windowBits > 15) return Z_STREAM_ERROR; strm->msg = Z_NULL; /* in case we return an error */ if (strm->zalloc == (alloc_func)0) { strm->zalloc = zcalloc; strm->opaque = (voidpf)0; } if (strm->zfree == (free_func)0) strm->zfree = zcfree; state = (struct inflate_state FAR *)ZALLOC(strm, 1, sizeof(struct inflate_state)); if (state == Z_NULL) return Z_MEM_ERROR; Tracev((stderr, "inflate: allocated\n")); strm->state = (struct internal_state FAR *)state; state->dmax = 32768U; state->wbits = windowBits; state->wsize = 1U << windowBits; state->window = window; state->wnext = 0; state->whave = 0; return Z_OK; } /* Return state with length and distance decoding tables and index sizes set to fixed code decoding. Normally this returns fixed tables from inffixed.h. If BUILDFIXED is defined, then instead this routine builds the tables the first time it's called, and returns those tables the first time and thereafter. This reduces the size of the code by about 2K bytes, in exchange for a little execution time. However, BUILDFIXED should not be used for threaded applications, since the rewriting of the tables and virgin may not be thread-safe. */ local void fixedtables(state) struct inflate_state FAR *state; { #ifdef BUILDFIXED static int virgin = 1; static code *lenfix, *distfix; static code fixed[544]; /* build fixed huffman tables if first call (may not be thread safe) */ if (virgin) { unsigned sym, bits; static code *next; /* literal/length table */ sym = 0; while (sym < 144) state->lens[sym++] = 8; while (sym < 256) state->lens[sym++] = 9; while (sym < 280) state->lens[sym++] = 7; while (sym < 288) state->lens[sym++] = 8; next = fixed; lenfix = next; bits = 9; inflate_table(LENS, state->lens, 288, &(next), &(bits), state->work); /* distance table */ sym = 0; while (sym < 32) state->lens[sym++] = 5; distfix = next; bits = 5; inflate_table(DISTS, state->lens, 32, &(next), &(bits), state->work); /* do this just once */ virgin = 0; } #else /* !BUILDFIXED */ # include "inffixed.h" #endif /* BUILDFIXED */ state->lencode = lenfix; state->lenbits = 9; state->distcode = distfix; state->distbits = 5; } /* Macros for inflateBack(): */ /* Load returned state from inflate_fast() */ #define LOAD() \ do { \ put = strm->next_out; \ left = strm->avail_out; \ next = strm->next_in; \ have = strm->avail_in; \ hold = state->hold; \ bits = state->bits; \ } while (0) /* Set state from registers for inflate_fast() */ #define RESTORE() \ do { \ strm->next_out = put; \ strm->avail_out = left; \ strm->next_in = next; \ strm->avail_in = have; \ state->hold = hold; \ state->bits = bits; \ } while (0) /* Clear the input bit accumulator */ #define INITBITS() \ do { \ hold = 0; \ bits = 0; \ } while (0) /* Assure that some input is available. If input is requested, but denied, then return a Z_BUF_ERROR from inflateBack(). */ #define PULL() \ do { \ if (have == 0) { \ have = in(in_desc, &next); \ if (have == 0) { \ next = Z_NULL; \ ret = Z_BUF_ERROR; \ goto inf_leave; \ } \ } \ } while (0) /* Get a byte of input into the bit accumulator, or return from inflateBack() with an error if there is no input available. */ #define PULLBYTE() \ do { \ PULL(); \ have--; \ hold += (unsigned long)(*next++) << bits; \ bits += 8; \ } while (0) /* Assure that there are at least n bits in the bit accumulator. If there is not enough available input to do that, then return from inflateBack() with an error. */ #define NEEDBITS(n) \ do { \ while (bits < (unsigned)(n)) \ PULLBYTE(); \ } while (0) /* Return the low n bits of the bit accumulator (n < 16) */ #define BITS(n) \ ((unsigned)hold & ((1U << (n)) - 1)) /* Remove n bits from the bit accumulator */ #define DROPBITS(n) \ do { \ hold >>= (n); \ bits -= (unsigned)(n); \ } while (0) /* Remove zero to seven bits as needed to go to a byte boundary */ #define BYTEBITS() \ do { \ hold >>= bits & 7; \ bits -= bits & 7; \ } while (0) /* Assure that some output space is available, by writing out the window if it's full. If the write fails, return from inflateBack() with a Z_BUF_ERROR. */ #define ROOM() \ do { \ if (left == 0) { \ put = state->window; \ left = state->wsize; \ state->whave = left; \ if (out(out_desc, put, left)) { \ ret = Z_BUF_ERROR; \ goto inf_leave; \ } \ } \ } while (0) /* strm provides the memory allocation functions and window buffer on input, and provides information on the unused input on return. For Z_DATA_ERROR returns, strm will also provide an error message. in() and out() are the call-back input and output functions. When inflateBack() needs more input, it calls in(). When inflateBack() has filled the window with output, or when it completes with data in the window, it calls out() to write out the data. The application must not change the provided input until in() is called again or inflateBack() returns. The application must not change the window/output buffer until inflateBack() returns. in() and out() are called with a descriptor parameter provided in the inflateBack() call. This parameter can be a structure that provides the information required to do the read or write, as well as accumulated information on the input and output such as totals and check values. in() should return zero on failure. out() should return non-zero on failure. If either in() or out() fails, than inflateBack() returns a Z_BUF_ERROR. strm->next_in can be checked for Z_NULL to see whether it was in() or out() that caused in the error. Otherwise, inflateBack() returns Z_STREAM_END on success, Z_DATA_ERROR for an deflate format error, or Z_MEM_ERROR if it could not allocate memory for the state. inflateBack() can also return Z_STREAM_ERROR if the input parameters are not correct, i.e. strm is Z_NULL or the state was not initialized. */ int ZEXPORT inflateBack(strm, in, in_desc, out, out_desc) z_streamp strm; in_func in; void FAR *in_desc; out_func out; void FAR *out_desc; { struct inflate_state FAR *state; unsigned char FAR *next; /* next input */ unsigned char FAR *put; /* next output */ unsigned have, left; /* available input and output */ unsigned long hold; /* bit buffer */ unsigned bits; /* bits in bit buffer */ unsigned copy; /* number of stored or match bytes to copy */ unsigned char FAR *from; /* where to copy match bytes from */ code here; /* current decoding table entry */ code last; /* parent table entry */ unsigned len; /* length to copy for repeats, bits to drop */ int ret; /* return code */ static const unsigned short order[19] = /* permutation of code lengths */ {16, 17, 18, 0, 8, 7, 9, 6, 10, 5, 11, 4, 12, 3, 13, 2, 14, 1, 15}; /* Check that the strm exists and that the state was initialized */ if (strm == Z_NULL || strm->state == Z_NULL) return Z_STREAM_ERROR; state = (struct inflate_state FAR *)strm->state; /* Reset the state */ strm->msg = Z_NULL; state->mode = TYPE; state->last = 0; state->whave = 0; next = strm->next_in; have = next != Z_NULL ? strm->avail_in : 0; hold = 0; bits = 0; put = state->window; left = state->wsize; /* Inflate until end of block marked as last */ for (;;) switch (state->mode) { case TYPE: /* determine and dispatch block type */ if (state->last) { BYTEBITS(); state->mode = DONE; break; } NEEDBITS(3); state->last = BITS(1); DROPBITS(1); switch (BITS(2)) { case 0: /* stored block */ Tracev((stderr, "inflate: stored block%s\n", state->last ? " (last)" : "")); state->mode = STORED; break; case 1: /* fixed block */ fixedtables(state); Tracev((stderr, "inflate: fixed codes block%s\n", state->last ? " (last)" : "")); state->mode = LEN; /* decode codes */ break; case 2: /* dynamic block */ Tracev((stderr, "inflate: dynamic codes block%s\n", state->last ? " (last)" : "")); state->mode = TABLE; break; case 3: strm->msg = (char *)"invalid block type"; state->mode = BAD; } DROPBITS(2); break; case STORED: /* get and verify stored block length */ BYTEBITS(); /* go to byte boundary */ NEEDBITS(32); if ((hold & 0xffff) != ((hold >> 16) ^ 0xffff)) { strm->msg = (char *)"invalid stored block lengths"; state->mode = BAD; break; } state->length = (unsigned)hold & 0xffff; Tracev((stderr, "inflate: stored length %u\n", state->length)); INITBITS(); /* copy stored block from input to output */ while (state->length != 0) { copy = state->length; PULL(); ROOM(); if (copy > have) copy = have; if (copy > left) copy = left; zmemcpy(put, next, copy); have -= copy; next += copy; left -= copy; put += copy; state->length -= copy; } Tracev((stderr, "inflate: stored end\n")); state->mode = TYPE; break; case TABLE: /* get dynamic table entries descriptor */ NEEDBITS(14); state->nlen = BITS(5) + 257; DROPBITS(5); state->ndist = BITS(5) + 1; DROPBITS(5); state->ncode = BITS(4) + 4; DROPBITS(4); #ifndef PKZIP_BUG_WORKAROUND if (state->nlen > 286 || state->ndist > 30) { strm->msg = (char *)"too many length or distance symbols"; state->mode = BAD; break; } #endif Tracev((stderr, "inflate: table sizes ok\n")); /* get code length code lengths (not a typo) */ state->have = 0; while (state->have < state->ncode) { NEEDBITS(3); state->lens[order[state->have++]] = (unsigned short)BITS(3); DROPBITS(3); } while (state->have < 19) state->lens[order[state->have++]] = 0; state->next = state->codes; state->lencode = (code const FAR *)(state->next); state->lenbits = 7; ret = inflate_table(CODES, state->lens, 19, &(state->next), &(state->lenbits), state->work); if (ret) { strm->msg = (char *)"invalid code lengths set"; state->mode = BAD; break; } Tracev((stderr, "inflate: code lengths ok\n")); /* get length and distance code code lengths */ state->have = 0; while (state->have < state->nlen + state->ndist) { for (;;) { here = state->lencode[BITS(state->lenbits)]; if ((unsigned)(here.bits) <= bits) break; PULLBYTE(); } if (here.val < 16) { NEEDBITS(here.bits); DROPBITS(here.bits); state->lens[state->have++] = here.val; } else { if (here.val == 16) { NEEDBITS(here.bits + 2); DROPBITS(here.bits); if (state->have == 0) { strm->msg = (char *)"invalid bit length repeat"; state->mode = BAD; break; } len = (unsigned)(state->lens[state->have - 1]); copy = 3 + BITS(2); DROPBITS(2); } else if (here.val == 17) { NEEDBITS(here.bits + 3); DROPBITS(here.bits); len = 0; copy = 3 + BITS(3); DROPBITS(3); } else { NEEDBITS(here.bits + 7); DROPBITS(here.bits); len = 0; copy = 11 + BITS(7); DROPBITS(7); } if (state->have + copy > state->nlen + state->ndist) { strm->msg = (char *)"invalid bit length repeat"; state->mode = BAD; break; } while (copy--) state->lens[state->have++] = (unsigned short)len; } } /* handle error breaks in while */ if (state->mode == BAD) break; /* check for end-of-block code (better have one) */ if (state->lens[256] == 0) { strm->msg = (char *)"invalid code -- missing end-of-block"; state->mode = BAD; break; } /* build code tables -- note: do not change the lenbits or distbits values here (9 and 6) without reading the comments in inftrees.h concerning the ENOUGH constants, which depend on those values */ state->next = state->codes; state->lencode = (code const FAR *)(state->next); state->lenbits = 9; ret = inflate_table(LENS, state->lens, state->nlen, &(state->next), &(state->lenbits), state->work); if (ret) { strm->msg = (char *)"invalid literal/lengths set"; state->mode = BAD; break; } state->distcode = (code const FAR *)(state->next); state->distbits = 6; ret = inflate_table(DISTS, state->lens + state->nlen, state->ndist, &(state->next), &(state->distbits), state->work); if (ret) { strm->msg = (char *)"invalid distances set"; state->mode = BAD; break; } Tracev((stderr, "inflate: codes ok\n")); state->mode = LEN; case LEN: /* use inflate_fast() if we have enough input and output */ if (have >= 6 && left >= 258) { RESTORE(); if (state->whave < state->wsize) state->whave = state->wsize - left; inflate_fast(strm, state->wsize); LOAD(); break; } /* get a literal, length, or end-of-block code */ for (;;) { here = state->lencode[BITS(state->lenbits)]; if ((unsigned)(here.bits) <= bits) break; PULLBYTE(); } if (here.op && (here.op & 0xf0) == 0) { last = here; for (;;) { here = state->lencode[last.val + (BITS(last.bits + last.op) >> last.bits)]; if ((unsigned)(last.bits + here.bits) <= bits) break; PULLBYTE(); } DROPBITS(last.bits); } DROPBITS(here.bits); state->length = (unsigned)here.val; /* process literal */ if (here.op == 0) { Tracevv((stderr, here.val >= 0x20 && here.val < 0x7f ? "inflate: literal '%c'\n" : "inflate: literal 0x%02x\n", here.val)); ROOM(); *put++ = (unsigned char)(state->length); left--; state->mode = LEN; break; } /* process end of block */ if (here.op & 32) { Tracevv((stderr, "inflate: end of block\n")); state->mode = TYPE; break; } /* invalid code */ if (here.op & 64) { strm->msg = (char *)"invalid literal/length code"; state->mode = BAD; break; } /* length code -- get extra bits, if any */ state->extra = (unsigned)(here.op) & 15; if (state->extra != 0) { NEEDBITS(state->extra); state->length += BITS(state->extra); DROPBITS(state->extra); } Tracevv((stderr, "inflate: length %u\n", state->length)); /* get distance code */ for (;;) { here = state->distcode[BITS(state->distbits)]; if ((unsigned)(here.bits) <= bits) break; PULLBYTE(); } if ((here.op & 0xf0) == 0) { last = here; for (;;) { here = state->distcode[last.val + (BITS(last.bits + last.op) >> last.bits)]; if ((unsigned)(last.bits + here.bits) <= bits) break; PULLBYTE(); } DROPBITS(last.bits); } DROPBITS(here.bits); if (here.op & 64) { strm->msg = (char *)"invalid distance code"; state->mode = BAD; break; } state->offset = (unsigned)here.val; /* get distance extra bits, if any */ state->extra = (unsigned)(here.op) & 15; if (state->extra != 0) { NEEDBITS(state->extra); state->offset += BITS(state->extra); DROPBITS(state->extra); } if (state->offset > state->wsize - (state->whave < state->wsize ? left : 0)) { strm->msg = (char *)"invalid distance too far back"; state->mode = BAD; break; } Tracevv((stderr, "inflate: distance %u\n", state->offset)); /* copy match from window to output */ do { ROOM(); copy = state->wsize - state->offset; if (copy < left) { from = put + copy; copy = left - copy; } else { from = put - state->offset; copy = left; } if (copy > state->length) copy = state->length; state->length -= copy; left -= copy; do { *put++ = *from++; } while (--copy); } while (state->length != 0); break; case DONE: /* inflate stream terminated properly -- write leftover output */ ret = Z_STREAM_END; if (left < state->wsize) { if (out(out_desc, state->window, state->wsize - left)) ret = Z_BUF_ERROR; } goto inf_leave; case BAD: ret = Z_DATA_ERROR; goto inf_leave; default: /* can't happen, but makes compilers happy */ ret = Z_STREAM_ERROR; goto inf_leave; } /* Return unused input */ inf_leave: strm->next_in = next; strm->avail_in = have; return ret; } int ZEXPORT inflateBackEnd(strm) z_streamp strm; { if (strm == Z_NULL || strm->state == Z_NULL || strm->zfree == (free_func)0) return Z_STREAM_ERROR; ZFREE(strm, strm->state); strm->state = Z_NULL; Tracev((stderr, "inflate: end\n")); return Z_OK; } healpy-1.8.1/cfitsio/zlib/deflate.c0000654000175000017530000020460712272000775017576 0ustar zoncaplanck00000000000000/* deflate.c -- compress data using the deflation algorithm * Copyright (C) 1995-2010 Jean-loup Gailly and Mark Adler * For conditions of distribution and use, see copyright notice in zlib.h */ /* * ALGORITHM * * The "deflation" process depends on being able to identify portions * of the input text which are identical to earlier input (within a * sliding window trailing behind the input currently being processed). * * The most straightforward technique turns out to be the fastest for * most input files: try all possible matches and select the longest. * The key feature of this algorithm is that insertions into the string * dictionary are very simple and thus fast, and deletions are avoided * completely. Insertions are performed at each input character, whereas * string matches are performed only when the previous match ends. So it * is preferable to spend more time in matches to allow very fast string * insertions and avoid deletions. The matching algorithm for small * strings is inspired from that of Rabin & Karp. A brute force approach * is used to find longer strings when a small match has been found. * A similar algorithm is used in comic (by Jan-Mark Wams) and freeze * (by Leonid Broukhis). * A previous version of this file used a more sophisticated algorithm * (by Fiala and Greene) which is guaranteed to run in linear amortized * time, but has a larger average cost, uses more memory and is patented. * However the F&G algorithm may be faster for some highly redundant * files if the parameter max_chain_length (described below) is too large. * * ACKNOWLEDGEMENTS * * The idea of lazy evaluation of matches is due to Jan-Mark Wams, and * I found it in 'freeze' written by Leonid Broukhis. * Thanks to many people for bug reports and testing. * * REFERENCES * * Deutsch, L.P.,"DEFLATE Compressed Data Format Specification". * Available in http://www.ietf.org/rfc/rfc1951.txt * * A description of the Rabin and Karp algorithm is given in the book * "Algorithms" by R. Sedgewick, Addison-Wesley, p252. * * Fiala,E.R., and Greene,D.H. * Data Compression with Finite Windows, Comm.ACM, 32,4 (1989) 490-595 * */ #include "deflate.h" const char deflate_copyright[] = " deflate 1.2.5 Copyright 1995-2010 Jean-loup Gailly and Mark Adler "; /* If you use the zlib library in a product, an acknowledgment is welcome in the documentation of your product. If for some reason you cannot include such an acknowledgment, I would appreciate that you keep this copyright string in the executable of your product. */ /* =========================================================================== * Function prototypes. */ typedef enum { need_more, /* block not completed, need more input or more output */ block_done, /* block flush performed */ finish_started, /* finish started, need only more output at next deflate */ finish_done /* finish done, accept no more input or output */ } block_state; typedef block_state (*compress_func) OF((deflate_state *s, int flush)); /* Compression function. Returns the block state after the call. */ local void fill_window OF((deflate_state *s)); local block_state deflate_stored OF((deflate_state *s, int flush)); local block_state deflate_fast OF((deflate_state *s, int flush)); #ifndef FASTEST local block_state deflate_slow OF((deflate_state *s, int flush)); #endif local block_state deflate_rle OF((deflate_state *s, int flush)); local block_state deflate_huff OF((deflate_state *s, int flush)); local void lm_init OF((deflate_state *s)); local void putShortMSB OF((deflate_state *s, uInt b)); local void flush_pending OF((z_streamp strm)); local int read_buf OF((z_streamp strm, Bytef *buf, unsigned size)); #ifdef ASMV void match_init OF((void)); /* asm code initialization */ uInt longest_match OF((deflate_state *s, IPos cur_match)); #else local uInt longest_match OF((deflate_state *s, IPos cur_match)); #endif #ifdef DEBUG local void check_match OF((deflate_state *s, IPos start, IPos match, int length)); #endif /* =========================================================================== * Local data */ #define NIL 0 /* Tail of hash chains */ #ifndef TOO_FAR # define TOO_FAR 4096 #endif /* Matches of length 3 are discarded if their distance exceeds TOO_FAR */ /* Values for max_lazy_match, good_match and max_chain_length, depending on * the desired pack level (0..9). The values given below have been tuned to * exclude worst case performance for pathological files. Better values may be * found for specific files. */ typedef struct config_s { ush good_length; /* reduce lazy search above this match length */ ush max_lazy; /* do not perform lazy search above this match length */ ush nice_length; /* quit search above this match length */ ush max_chain; compress_func func; } config; #ifdef FASTEST local const config configuration_table[2] = { /* good lazy nice chain */ /* 0 */ {0, 0, 0, 0, deflate_stored}, /* store only */ /* 1 */ {4, 4, 8, 4, deflate_fast}}; /* max speed, no lazy matches */ #else local const config configuration_table[10] = { /* good lazy nice chain */ /* 0 */ {0, 0, 0, 0, deflate_stored}, /* store only */ /* 1 */ {4, 4, 8, 4, deflate_fast}, /* max speed, no lazy matches */ /* 2 */ {4, 5, 16, 8, deflate_fast}, /* 3 */ {4, 6, 32, 32, deflate_fast}, /* 4 */ {4, 4, 16, 16, deflate_slow}, /* lazy matches */ /* 5 */ {8, 16, 32, 32, deflate_slow}, /* 6 */ {8, 16, 128, 128, deflate_slow}, /* 7 */ {8, 32, 128, 256, deflate_slow}, /* 8 */ {32, 128, 258, 1024, deflate_slow}, /* 9 */ {32, 258, 258, 4096, deflate_slow}}; /* max compression */ #endif /* Note: the deflate() code requires max_lazy >= MIN_MATCH and max_chain >= 4 * For deflate_fast() (levels <= 3) good is ignored and lazy has a different * meaning. */ #define EQUAL 0 /* result of memcmp for equal strings */ #ifndef NO_DUMMY_DECL struct static_tree_desc_s {int dummy;}; /* for buggy compilers */ #endif /* =========================================================================== * Update a hash value with the given input byte * IN assertion: all calls to to UPDATE_HASH are made with consecutive * input characters, so that a running hash key can be computed from the * previous key instead of complete recalculation each time. */ #define UPDATE_HASH(s,h,c) (h = (((h)<hash_shift) ^ (c)) & s->hash_mask) /* =========================================================================== * Insert string str in the dictionary and set match_head to the previous head * of the hash chain (the most recent string with same hash key). Return * the previous length of the hash chain. * If this file is compiled with -DFASTEST, the compression level is forced * to 1, and no hash chains are maintained. * IN assertion: all calls to to INSERT_STRING are made with consecutive * input characters and the first MIN_MATCH bytes of str are valid * (except for the last MIN_MATCH-1 bytes of the input file). */ #ifdef FASTEST #define INSERT_STRING(s, str, match_head) \ (UPDATE_HASH(s, s->ins_h, s->window[(str) + (MIN_MATCH-1)]), \ match_head = s->head[s->ins_h], \ s->head[s->ins_h] = (Pos)(str)) #else #define INSERT_STRING(s, str, match_head) \ (UPDATE_HASH(s, s->ins_h, s->window[(str) + (MIN_MATCH-1)]), \ match_head = s->prev[(str) & s->w_mask] = s->head[s->ins_h], \ s->head[s->ins_h] = (Pos)(str)) #endif /* =========================================================================== * Initialize the hash table (avoiding 64K overflow for 16 bit systems). * prev[] will be initialized on the fly. */ #define CLEAR_HASH(s) \ s->head[s->hash_size-1] = NIL; \ zmemzero((Bytef *)s->head, (unsigned)(s->hash_size-1)*sizeof(*s->head)); /* ========================================================================= */ int ZEXPORT deflateInit_(strm, level, version, stream_size) z_streamp strm; int level; const char *version; int stream_size; { return deflateInit2_(strm, level, Z_DEFLATED, MAX_WBITS, DEF_MEM_LEVEL, Z_DEFAULT_STRATEGY, version, stream_size); /* To do: ignore strm->next_in if we use it as window */ } /* ========================================================================= */ int ZEXPORT deflateInit2_(strm, level, method, windowBits, memLevel, strategy, version, stream_size) z_streamp strm; int level; int method; int windowBits; int memLevel; int strategy; const char *version; int stream_size; { deflate_state *s; int wrap = 1; static const char my_version[] = ZLIB_VERSION; ushf *overlay; /* We overlay pending_buf and d_buf+l_buf. This works since the average * output size for (length,distance) codes is <= 24 bits. */ if (version == Z_NULL || version[0] != my_version[0] || stream_size != sizeof(z_stream)) { return Z_VERSION_ERROR; } if (strm == Z_NULL) return Z_STREAM_ERROR; strm->msg = Z_NULL; if (strm->zalloc == (alloc_func)0) { strm->zalloc = zcalloc; strm->opaque = (voidpf)0; } if (strm->zfree == (free_func)0) strm->zfree = zcfree; #ifdef FASTEST if (level != 0) level = 1; #else if (level == Z_DEFAULT_COMPRESSION) level = 6; #endif if (windowBits < 0) { /* suppress zlib wrapper */ wrap = 0; windowBits = -windowBits; } #ifdef GZIP else if (windowBits > 15) { wrap = 2; /* write gzip wrapper instead */ windowBits -= 16; } #endif if (memLevel < 1 || memLevel > MAX_MEM_LEVEL || method != Z_DEFLATED || windowBits < 8 || windowBits > 15 || level < 0 || level > 9 || strategy < 0 || strategy > Z_FIXED) { return Z_STREAM_ERROR; } if (windowBits == 8) windowBits = 9; /* until 256-byte window bug fixed */ s = (deflate_state *) ZALLOC(strm, 1, sizeof(deflate_state)); if (s == Z_NULL) return Z_MEM_ERROR; strm->state = (struct internal_state FAR *)s; s->strm = strm; s->wrap = wrap; s->gzhead = Z_NULL; s->w_bits = windowBits; s->w_size = 1 << s->w_bits; s->w_mask = s->w_size - 1; s->hash_bits = memLevel + 7; s->hash_size = 1 << s->hash_bits; s->hash_mask = s->hash_size - 1; s->hash_shift = ((s->hash_bits+MIN_MATCH-1)/MIN_MATCH); s->window = (Bytef *) ZALLOC(strm, s->w_size, 2*sizeof(Byte)); s->prev = (Posf *) ZALLOC(strm, s->w_size, sizeof(Pos)); s->head = (Posf *) ZALLOC(strm, s->hash_size, sizeof(Pos)); s->high_water = 0; /* nothing written to s->window yet */ s->lit_bufsize = 1 << (memLevel + 6); /* 16K elements by default */ overlay = (ushf *) ZALLOC(strm, s->lit_bufsize, sizeof(ush)+2); s->pending_buf = (uchf *) overlay; s->pending_buf_size = (ulg)s->lit_bufsize * (sizeof(ush)+2L); if (s->window == Z_NULL || s->prev == Z_NULL || s->head == Z_NULL || s->pending_buf == Z_NULL) { s->status = FINISH_STATE; strm->msg = (char*)ERR_MSG(Z_MEM_ERROR); deflateEnd (strm); return Z_MEM_ERROR; } s->d_buf = overlay + s->lit_bufsize/sizeof(ush); s->l_buf = s->pending_buf + (1+sizeof(ush))*s->lit_bufsize; s->level = level; s->strategy = strategy; s->method = (Byte)method; return deflateReset(strm); } /* ========================================================================= */ int ZEXPORT deflateSetDictionary (strm, dictionary, dictLength) z_streamp strm; const Bytef *dictionary; uInt dictLength; { deflate_state *s; uInt length = dictLength; uInt n; IPos hash_head = 0; if (strm == Z_NULL || strm->state == Z_NULL || dictionary == Z_NULL || strm->state->wrap == 2 || (strm->state->wrap == 1 && strm->state->status != INIT_STATE)) return Z_STREAM_ERROR; s = strm->state; if (s->wrap) strm->adler = adler32(strm->adler, dictionary, dictLength); if (length < MIN_MATCH) return Z_OK; if (length > s->w_size) { length = s->w_size; dictionary += dictLength - length; /* use the tail of the dictionary */ } zmemcpy(s->window, dictionary, length); s->strstart = length; s->block_start = (long)length; /* Insert all strings in the hash table (except for the last two bytes). * s->lookahead stays null, so s->ins_h will be recomputed at the next * call of fill_window. */ s->ins_h = s->window[0]; UPDATE_HASH(s, s->ins_h, s->window[1]); for (n = 0; n <= length - MIN_MATCH; n++) { INSERT_STRING(s, n, hash_head); } if (hash_head) hash_head = 0; /* to make compiler happy */ return Z_OK; } /* ========================================================================= */ int ZEXPORT deflateReset (strm) z_streamp strm; { deflate_state *s; if (strm == Z_NULL || strm->state == Z_NULL || strm->zalloc == (alloc_func)0 || strm->zfree == (free_func)0) { return Z_STREAM_ERROR; } strm->total_in = strm->total_out = 0; strm->msg = Z_NULL; /* use zfree if we ever allocate msg dynamically */ strm->data_type = Z_UNKNOWN; s = (deflate_state *)strm->state; s->pending = 0; s->pending_out = s->pending_buf; if (s->wrap < 0) { s->wrap = -s->wrap; /* was made negative by deflate(..., Z_FINISH); */ } s->status = s->wrap ? INIT_STATE : BUSY_STATE; strm->adler = #ifdef GZIP s->wrap == 2 ? crc32(0L, Z_NULL, 0) : #endif adler32(0L, Z_NULL, 0); s->last_flush = Z_NO_FLUSH; _tr_init(s); lm_init(s); return Z_OK; } /* ========================================================================= */ int ZEXPORT deflateSetHeader (strm, head) z_streamp strm; gz_headerp head; { if (strm == Z_NULL || strm->state == Z_NULL) return Z_STREAM_ERROR; if (strm->state->wrap != 2) return Z_STREAM_ERROR; strm->state->gzhead = head; return Z_OK; } /* ========================================================================= */ int ZEXPORT deflatePrime (strm, bits, value) z_streamp strm; int bits; int value; { if (strm == Z_NULL || strm->state == Z_NULL) return Z_STREAM_ERROR; strm->state->bi_valid = bits; strm->state->bi_buf = (ush)(value & ((1 << bits) - 1)); return Z_OK; } /* ========================================================================= */ int ZEXPORT deflateParams(strm, level, strategy) z_streamp strm; int level; int strategy; { deflate_state *s; compress_func func; int err = Z_OK; if (strm == Z_NULL || strm->state == Z_NULL) return Z_STREAM_ERROR; s = strm->state; #ifdef FASTEST if (level != 0) level = 1; #else if (level == Z_DEFAULT_COMPRESSION) level = 6; #endif if (level < 0 || level > 9 || strategy < 0 || strategy > Z_FIXED) { return Z_STREAM_ERROR; } func = configuration_table[s->level].func; if ((strategy != s->strategy || func != configuration_table[level].func) && strm->total_in != 0) { /* Flush the last buffer: */ err = deflate(strm, Z_BLOCK); } if (s->level != level) { s->level = level; s->max_lazy_match = configuration_table[level].max_lazy; s->good_match = configuration_table[level].good_length; s->nice_match = configuration_table[level].nice_length; s->max_chain_length = configuration_table[level].max_chain; } s->strategy = strategy; return err; } /* ========================================================================= */ int ZEXPORT deflateTune(strm, good_length, max_lazy, nice_length, max_chain) z_streamp strm; int good_length; int max_lazy; int nice_length; int max_chain; { deflate_state *s; if (strm == Z_NULL || strm->state == Z_NULL) return Z_STREAM_ERROR; s = strm->state; s->good_match = good_length; s->max_lazy_match = max_lazy; s->nice_match = nice_length; s->max_chain_length = max_chain; return Z_OK; } /* ========================================================================= * For the default windowBits of 15 and memLevel of 8, this function returns * a close to exact, as well as small, upper bound on the compressed size. * They are coded as constants here for a reason--if the #define's are * changed, then this function needs to be changed as well. The return * value for 15 and 8 only works for those exact settings. * * For any setting other than those defaults for windowBits and memLevel, * the value returned is a conservative worst case for the maximum expansion * resulting from using fixed blocks instead of stored blocks, which deflate * can emit on compressed data for some combinations of the parameters. * * This function could be more sophisticated to provide closer upper bounds for * every combination of windowBits and memLevel. But even the conservative * upper bound of about 14% expansion does not seem onerous for output buffer * allocation. */ uLong ZEXPORT deflateBound(strm, sourceLen) z_streamp strm; uLong sourceLen; { deflate_state *s; uLong complen, wraplen; Bytef *str; /* conservative upper bound for compressed data */ complen = sourceLen + ((sourceLen + 7) >> 3) + ((sourceLen + 63) >> 6) + 5; /* if can't get parameters, return conservative bound plus zlib wrapper */ if (strm == Z_NULL || strm->state == Z_NULL) return complen + 6; /* compute wrapper length */ s = strm->state; switch (s->wrap) { case 0: /* raw deflate */ wraplen = 0; break; case 1: /* zlib wrapper */ wraplen = 6 + (s->strstart ? 4 : 0); break; case 2: /* gzip wrapper */ wraplen = 18; if (s->gzhead != Z_NULL) { /* user-supplied gzip header */ if (s->gzhead->extra != Z_NULL) wraplen += 2 + s->gzhead->extra_len; str = s->gzhead->name; if (str != Z_NULL) do { wraplen++; } while (*str++); str = s->gzhead->comment; if (str != Z_NULL) do { wraplen++; } while (*str++); if (s->gzhead->hcrc) wraplen += 2; } break; default: /* for compiler happiness */ wraplen = 6; } /* if not default parameters, return conservative bound */ if (s->w_bits != 15 || s->hash_bits != 8 + 7) return complen + wraplen; /* default settings: return tight bound for that case */ return sourceLen + (sourceLen >> 12) + (sourceLen >> 14) + (sourceLen >> 25) + 13 - 6 + wraplen; } /* ========================================================================= * Put a short in the pending buffer. The 16-bit value is put in MSB order. * IN assertion: the stream state is correct and there is enough room in * pending_buf. */ local void putShortMSB (s, b) deflate_state *s; uInt b; { put_byte(s, (Byte)(b >> 8)); put_byte(s, (Byte)(b & 0xff)); } /* ========================================================================= * Flush as much pending output as possible. All deflate() output goes * through this function so some applications may wish to modify it * to avoid allocating a large strm->next_out buffer and copying into it. * (See also read_buf()). */ local void flush_pending(strm) z_streamp strm; { unsigned len = strm->state->pending; if (len > strm->avail_out) len = strm->avail_out; if (len == 0) return; zmemcpy(strm->next_out, strm->state->pending_out, len); strm->next_out += len; strm->state->pending_out += len; strm->total_out += len; strm->avail_out -= len; strm->state->pending -= len; if (strm->state->pending == 0) { strm->state->pending_out = strm->state->pending_buf; } } /* ========================================================================= */ int ZEXPORT deflate (strm, flush) z_streamp strm; int flush; { int old_flush; /* value of flush param for previous deflate call */ deflate_state *s; if (strm == Z_NULL || strm->state == Z_NULL || flush > Z_BLOCK || flush < 0) { return Z_STREAM_ERROR; } s = strm->state; if (strm->next_out == Z_NULL || (strm->next_in == Z_NULL && strm->avail_in != 0) || (s->status == FINISH_STATE && flush != Z_FINISH)) { ERR_RETURN(strm, Z_STREAM_ERROR); } if (strm->avail_out == 0) ERR_RETURN(strm, Z_BUF_ERROR); s->strm = strm; /* just in case */ old_flush = s->last_flush; s->last_flush = flush; /* Write the header */ if (s->status == INIT_STATE) { #ifdef GZIP if (s->wrap == 2) { strm->adler = crc32(0L, Z_NULL, 0); put_byte(s, 31); put_byte(s, 139); put_byte(s, 8); if (s->gzhead == Z_NULL) { put_byte(s, 0); put_byte(s, 0); put_byte(s, 0); put_byte(s, 0); put_byte(s, 0); put_byte(s, s->level == 9 ? 2 : (s->strategy >= Z_HUFFMAN_ONLY || s->level < 2 ? 4 : 0)); put_byte(s, OS_CODE); s->status = BUSY_STATE; } else { put_byte(s, (s->gzhead->text ? 1 : 0) + (s->gzhead->hcrc ? 2 : 0) + (s->gzhead->extra == Z_NULL ? 0 : 4) + (s->gzhead->name == Z_NULL ? 0 : 8) + (s->gzhead->comment == Z_NULL ? 0 : 16) ); put_byte(s, (Byte)(s->gzhead->time & 0xff)); put_byte(s, (Byte)((s->gzhead->time >> 8) & 0xff)); put_byte(s, (Byte)((s->gzhead->time >> 16) & 0xff)); put_byte(s, (Byte)((s->gzhead->time >> 24) & 0xff)); put_byte(s, s->level == 9 ? 2 : (s->strategy >= Z_HUFFMAN_ONLY || s->level < 2 ? 4 : 0)); put_byte(s, s->gzhead->os & 0xff); if (s->gzhead->extra != Z_NULL) { put_byte(s, s->gzhead->extra_len & 0xff); put_byte(s, (s->gzhead->extra_len >> 8) & 0xff); } if (s->gzhead->hcrc) strm->adler = crc32(strm->adler, s->pending_buf, s->pending); s->gzindex = 0; s->status = EXTRA_STATE; } } else #endif { uInt header = (Z_DEFLATED + ((s->w_bits-8)<<4)) << 8; uInt level_flags; if (s->strategy >= Z_HUFFMAN_ONLY || s->level < 2) level_flags = 0; else if (s->level < 6) level_flags = 1; else if (s->level == 6) level_flags = 2; else level_flags = 3; header |= (level_flags << 6); if (s->strstart != 0) header |= PRESET_DICT; header += 31 - (header % 31); s->status = BUSY_STATE; putShortMSB(s, header); /* Save the adler32 of the preset dictionary: */ if (s->strstart != 0) { putShortMSB(s, (uInt)(strm->adler >> 16)); putShortMSB(s, (uInt)(strm->adler & 0xffff)); } strm->adler = adler32(0L, Z_NULL, 0); } } #ifdef GZIP if (s->status == EXTRA_STATE) { if (s->gzhead->extra != Z_NULL) { uInt beg = s->pending; /* start of bytes to update crc */ while (s->gzindex < (s->gzhead->extra_len & 0xffff)) { if (s->pending == s->pending_buf_size) { if (s->gzhead->hcrc && s->pending > beg) strm->adler = crc32(strm->adler, s->pending_buf + beg, s->pending - beg); flush_pending(strm); beg = s->pending; if (s->pending == s->pending_buf_size) break; } put_byte(s, s->gzhead->extra[s->gzindex]); s->gzindex++; } if (s->gzhead->hcrc && s->pending > beg) strm->adler = crc32(strm->adler, s->pending_buf + beg, s->pending - beg); if (s->gzindex == s->gzhead->extra_len) { s->gzindex = 0; s->status = NAME_STATE; } } else s->status = NAME_STATE; } if (s->status == NAME_STATE) { if (s->gzhead->name != Z_NULL) { uInt beg = s->pending; /* start of bytes to update crc */ int val; do { if (s->pending == s->pending_buf_size) { if (s->gzhead->hcrc && s->pending > beg) strm->adler = crc32(strm->adler, s->pending_buf + beg, s->pending - beg); flush_pending(strm); beg = s->pending; if (s->pending == s->pending_buf_size) { val = 1; break; } } val = s->gzhead->name[s->gzindex++]; put_byte(s, val); } while (val != 0); if (s->gzhead->hcrc && s->pending > beg) strm->adler = crc32(strm->adler, s->pending_buf + beg, s->pending - beg); if (val == 0) { s->gzindex = 0; s->status = COMMENT_STATE; } } else s->status = COMMENT_STATE; } if (s->status == COMMENT_STATE) { if (s->gzhead->comment != Z_NULL) { uInt beg = s->pending; /* start of bytes to update crc */ int val; do { if (s->pending == s->pending_buf_size) { if (s->gzhead->hcrc && s->pending > beg) strm->adler = crc32(strm->adler, s->pending_buf + beg, s->pending - beg); flush_pending(strm); beg = s->pending; if (s->pending == s->pending_buf_size) { val = 1; break; } } val = s->gzhead->comment[s->gzindex++]; put_byte(s, val); } while (val != 0); if (s->gzhead->hcrc && s->pending > beg) strm->adler = crc32(strm->adler, s->pending_buf + beg, s->pending - beg); if (val == 0) s->status = HCRC_STATE; } else s->status = HCRC_STATE; } if (s->status == HCRC_STATE) { if (s->gzhead->hcrc) { if (s->pending + 2 > s->pending_buf_size) flush_pending(strm); if (s->pending + 2 <= s->pending_buf_size) { put_byte(s, (Byte)(strm->adler & 0xff)); put_byte(s, (Byte)((strm->adler >> 8) & 0xff)); strm->adler = crc32(0L, Z_NULL, 0); s->status = BUSY_STATE; } } else s->status = BUSY_STATE; } #endif /* Flush as much pending output as possible */ if (s->pending != 0) { flush_pending(strm); if (strm->avail_out == 0) { /* Since avail_out is 0, deflate will be called again with * more output space, but possibly with both pending and * avail_in equal to zero. There won't be anything to do, * but this is not an error situation so make sure we * return OK instead of BUF_ERROR at next call of deflate: */ s->last_flush = -1; return Z_OK; } /* Make sure there is something to do and avoid duplicate consecutive * flushes. For repeated and useless calls with Z_FINISH, we keep * returning Z_STREAM_END instead of Z_BUF_ERROR. */ } else if (strm->avail_in == 0 && flush <= old_flush && flush != Z_FINISH) { ERR_RETURN(strm, Z_BUF_ERROR); } /* User must not provide more input after the first FINISH: */ if (s->status == FINISH_STATE && strm->avail_in != 0) { ERR_RETURN(strm, Z_BUF_ERROR); } /* Start a new block or continue the current one. */ if (strm->avail_in != 0 || s->lookahead != 0 || (flush != Z_NO_FLUSH && s->status != FINISH_STATE)) { block_state bstate; bstate = s->strategy == Z_HUFFMAN_ONLY ? deflate_huff(s, flush) : (s->strategy == Z_RLE ? deflate_rle(s, flush) : (*(configuration_table[s->level].func))(s, flush)); if (bstate == finish_started || bstate == finish_done) { s->status = FINISH_STATE; } if (bstate == need_more || bstate == finish_started) { if (strm->avail_out == 0) { s->last_flush = -1; /* avoid BUF_ERROR next call, see above */ } return Z_OK; /* If flush != Z_NO_FLUSH && avail_out == 0, the next call * of deflate should use the same flush parameter to make sure * that the flush is complete. So we don't have to output an * empty block here, this will be done at next call. This also * ensures that for a very small output buffer, we emit at most * one empty block. */ } if (bstate == block_done) { if (flush == Z_PARTIAL_FLUSH) { _tr_align(s); } else if (flush != Z_BLOCK) { /* FULL_FLUSH or SYNC_FLUSH */ _tr_stored_block(s, (char*)0, 0L, 0); /* For a full flush, this empty block will be recognized * as a special marker by inflate_sync(). */ if (flush == Z_FULL_FLUSH) { CLEAR_HASH(s); /* forget history */ if (s->lookahead == 0) { s->strstart = 0; s->block_start = 0L; } } } flush_pending(strm); if (strm->avail_out == 0) { s->last_flush = -1; /* avoid BUF_ERROR at next call, see above */ return Z_OK; } } } Assert(strm->avail_out > 0, "bug2"); if (flush != Z_FINISH) return Z_OK; if (s->wrap <= 0) return Z_STREAM_END; /* Write the trailer */ #ifdef GZIP if (s->wrap == 2) { put_byte(s, (Byte)(strm->adler & 0xff)); put_byte(s, (Byte)((strm->adler >> 8) & 0xff)); put_byte(s, (Byte)((strm->adler >> 16) & 0xff)); put_byte(s, (Byte)((strm->adler >> 24) & 0xff)); put_byte(s, (Byte)(strm->total_in & 0xff)); put_byte(s, (Byte)((strm->total_in >> 8) & 0xff)); put_byte(s, (Byte)((strm->total_in >> 16) & 0xff)); put_byte(s, (Byte)((strm->total_in >> 24) & 0xff)); } else #endif { putShortMSB(s, (uInt)(strm->adler >> 16)); putShortMSB(s, (uInt)(strm->adler & 0xffff)); } flush_pending(strm); /* If avail_out is zero, the application will call deflate again * to flush the rest. */ if (s->wrap > 0) s->wrap = -s->wrap; /* write the trailer only once! */ return s->pending != 0 ? Z_OK : Z_STREAM_END; } /* ========================================================================= */ int ZEXPORT deflateEnd (strm) z_streamp strm; { int status; if (strm == Z_NULL || strm->state == Z_NULL) return Z_STREAM_ERROR; status = strm->state->status; if (status != INIT_STATE && status != EXTRA_STATE && status != NAME_STATE && status != COMMENT_STATE && status != HCRC_STATE && status != BUSY_STATE && status != FINISH_STATE) { return Z_STREAM_ERROR; } /* Deallocate in reverse order of allocations: */ TRY_FREE(strm, strm->state->pending_buf); TRY_FREE(strm, strm->state->head); TRY_FREE(strm, strm->state->prev); TRY_FREE(strm, strm->state->window); ZFREE(strm, strm->state); strm->state = Z_NULL; return status == BUSY_STATE ? Z_DATA_ERROR : Z_OK; } /* ========================================================================= * Copy the source state to the destination state. * To simplify the source, this is not supported for 16-bit MSDOS (which * doesn't have enough memory anyway to duplicate compression states). */ int ZEXPORT deflateCopy (dest, source) z_streamp dest; z_streamp source; { #ifdef MAXSEG_64K return Z_STREAM_ERROR; #else deflate_state *ds; deflate_state *ss; ushf *overlay; if (source == Z_NULL || dest == Z_NULL || source->state == Z_NULL) { return Z_STREAM_ERROR; } ss = source->state; zmemcpy(dest, source, sizeof(z_stream)); ds = (deflate_state *) ZALLOC(dest, 1, sizeof(deflate_state)); if (ds == Z_NULL) return Z_MEM_ERROR; dest->state = (struct internal_state FAR *) ds; zmemcpy(ds, ss, sizeof(deflate_state)); ds->strm = dest; ds->window = (Bytef *) ZALLOC(dest, ds->w_size, 2*sizeof(Byte)); ds->prev = (Posf *) ZALLOC(dest, ds->w_size, sizeof(Pos)); ds->head = (Posf *) ZALLOC(dest, ds->hash_size, sizeof(Pos)); overlay = (ushf *) ZALLOC(dest, ds->lit_bufsize, sizeof(ush)+2); ds->pending_buf = (uchf *) overlay; if (ds->window == Z_NULL || ds->prev == Z_NULL || ds->head == Z_NULL || ds->pending_buf == Z_NULL) { deflateEnd (dest); return Z_MEM_ERROR; } /* following zmemcpy do not work for 16-bit MSDOS */ zmemcpy(ds->window, ss->window, ds->w_size * 2 * sizeof(Byte)); zmemcpy(ds->prev, ss->prev, ds->w_size * sizeof(Pos)); zmemcpy(ds->head, ss->head, ds->hash_size * sizeof(Pos)); zmemcpy(ds->pending_buf, ss->pending_buf, (uInt)ds->pending_buf_size); ds->pending_out = ds->pending_buf + (ss->pending_out - ss->pending_buf); ds->d_buf = overlay + ds->lit_bufsize/sizeof(ush); ds->l_buf = ds->pending_buf + (1+sizeof(ush))*ds->lit_bufsize; ds->l_desc.dyn_tree = ds->dyn_ltree; ds->d_desc.dyn_tree = ds->dyn_dtree; ds->bl_desc.dyn_tree = ds->bl_tree; return Z_OK; #endif /* MAXSEG_64K */ } /* =========================================================================== * Read a new buffer from the current input stream, update the adler32 * and total number of bytes read. All deflate() input goes through * this function so some applications may wish to modify it to avoid * allocating a large strm->next_in buffer and copying from it. * (See also flush_pending()). */ local int read_buf(strm, buf, size) z_streamp strm; Bytef *buf; unsigned size; { unsigned len = strm->avail_in; if (len > size) len = size; if (len == 0) return 0; strm->avail_in -= len; if (strm->state->wrap == 1) { strm->adler = adler32(strm->adler, strm->next_in, len); } #ifdef GZIP else if (strm->state->wrap == 2) { strm->adler = crc32(strm->adler, strm->next_in, len); } #endif zmemcpy(buf, strm->next_in, len); strm->next_in += len; strm->total_in += len; return (int)len; } /* =========================================================================== * Initialize the "longest match" routines for a new zlib stream */ local void lm_init (s) deflate_state *s; { s->window_size = (ulg)2L*s->w_size; CLEAR_HASH(s); /* Set the default configuration parameters: */ s->max_lazy_match = configuration_table[s->level].max_lazy; s->good_match = configuration_table[s->level].good_length; s->nice_match = configuration_table[s->level].nice_length; s->max_chain_length = configuration_table[s->level].max_chain; s->strstart = 0; s->block_start = 0L; s->lookahead = 0; s->match_length = s->prev_length = MIN_MATCH-1; s->match_available = 0; s->ins_h = 0; #ifndef FASTEST #ifdef ASMV match_init(); /* initialize the asm code */ #endif #endif } #ifndef FASTEST /* =========================================================================== * Set match_start to the longest match starting at the given string and * return its length. Matches shorter or equal to prev_length are discarded, * in which case the result is equal to prev_length and match_start is * garbage. * IN assertions: cur_match is the head of the hash chain for the current * string (strstart) and its distance is <= MAX_DIST, and prev_length >= 1 * OUT assertion: the match length is not greater than s->lookahead. */ #ifndef ASMV /* For 80x86 and 680x0, an optimized version will be provided in match.asm or * match.S. The code will be functionally equivalent. */ local uInt longest_match(s, cur_match) deflate_state *s; IPos cur_match; /* current match */ { unsigned chain_length = s->max_chain_length;/* max hash chain length */ register Bytef *scan = s->window + s->strstart; /* current string */ register Bytef *match; /* matched string */ register int len; /* length of current match */ int best_len = s->prev_length; /* best match length so far */ int nice_match = s->nice_match; /* stop if match long enough */ IPos limit = s->strstart > (IPos)MAX_DIST(s) ? s->strstart - (IPos)MAX_DIST(s) : NIL; /* Stop when cur_match becomes <= limit. To simplify the code, * we prevent matches with the string of window index 0. */ Posf *prev = s->prev; uInt wmask = s->w_mask; #ifdef UNALIGNED_OK /* Compare two bytes at a time. Note: this is not always beneficial. * Try with and without -DUNALIGNED_OK to check. */ register Bytef *strend = s->window + s->strstart + MAX_MATCH - 1; register ush scan_start = *(ushf*)scan; register ush scan_end = *(ushf*)(scan+best_len-1); #else register Bytef *strend = s->window + s->strstart + MAX_MATCH; register Byte scan_end1 = scan[best_len-1]; register Byte scan_end = scan[best_len]; #endif /* The code is optimized for HASH_BITS >= 8 and MAX_MATCH-2 multiple of 16. * It is easy to get rid of this optimization if necessary. */ Assert(s->hash_bits >= 8 && MAX_MATCH == 258, "Code too clever"); /* Do not waste too much time if we already have a good match: */ if (s->prev_length >= s->good_match) { chain_length >>= 2; } /* Do not look for matches beyond the end of the input. This is necessary * to make deflate deterministic. */ if ((uInt)nice_match > s->lookahead) nice_match = s->lookahead; Assert((ulg)s->strstart <= s->window_size-MIN_LOOKAHEAD, "need lookahead"); do { Assert(cur_match < s->strstart, "no future"); match = s->window + cur_match; /* Skip to next match if the match length cannot increase * or if the match length is less than 2. Note that the checks below * for insufficient lookahead only occur occasionally for performance * reasons. Therefore uninitialized memory will be accessed, and * conditional jumps will be made that depend on those values. * However the length of the match is limited to the lookahead, so * the output of deflate is not affected by the uninitialized values. */ #if (defined(UNALIGNED_OK) && MAX_MATCH == 258) /* This code assumes sizeof(unsigned short) == 2. Do not use * UNALIGNED_OK if your compiler uses a different size. */ if (*(ushf*)(match+best_len-1) != scan_end || *(ushf*)match != scan_start) continue; /* It is not necessary to compare scan[2] and match[2] since they are * always equal when the other bytes match, given that the hash keys * are equal and that HASH_BITS >= 8. Compare 2 bytes at a time at * strstart+3, +5, ... up to strstart+257. We check for insufficient * lookahead only every 4th comparison; the 128th check will be made * at strstart+257. If MAX_MATCH-2 is not a multiple of 8, it is * necessary to put more guard bytes at the end of the window, or * to check more often for insufficient lookahead. */ Assert(scan[2] == match[2], "scan[2]?"); scan++, match++; do { } while (*(ushf*)(scan+=2) == *(ushf*)(match+=2) && *(ushf*)(scan+=2) == *(ushf*)(match+=2) && *(ushf*)(scan+=2) == *(ushf*)(match+=2) && *(ushf*)(scan+=2) == *(ushf*)(match+=2) && scan < strend); /* The funny "do {}" generates better code on most compilers */ /* Here, scan <= window+strstart+257 */ Assert(scan <= s->window+(unsigned)(s->window_size-1), "wild scan"); if (*scan == *match) scan++; len = (MAX_MATCH - 1) - (int)(strend-scan); scan = strend - (MAX_MATCH-1); #else /* UNALIGNED_OK */ if (match[best_len] != scan_end || match[best_len-1] != scan_end1 || *match != *scan || *++match != scan[1]) continue; /* The check at best_len-1 can be removed because it will be made * again later. (This heuristic is not always a win.) * It is not necessary to compare scan[2] and match[2] since they * are always equal when the other bytes match, given that * the hash keys are equal and that HASH_BITS >= 8. */ scan += 2, match++; Assert(*scan == *match, "match[2]?"); /* We check for insufficient lookahead only every 8th comparison; * the 256th check will be made at strstart+258. */ do { } while (*++scan == *++match && *++scan == *++match && *++scan == *++match && *++scan == *++match && *++scan == *++match && *++scan == *++match && *++scan == *++match && *++scan == *++match && scan < strend); Assert(scan <= s->window+(unsigned)(s->window_size-1), "wild scan"); len = MAX_MATCH - (int)(strend - scan); scan = strend - MAX_MATCH; #endif /* UNALIGNED_OK */ if (len > best_len) { s->match_start = cur_match; best_len = len; if (len >= nice_match) break; #ifdef UNALIGNED_OK scan_end = *(ushf*)(scan+best_len-1); #else scan_end1 = scan[best_len-1]; scan_end = scan[best_len]; #endif } } while ((cur_match = prev[cur_match & wmask]) > limit && --chain_length != 0); if ((uInt)best_len <= s->lookahead) return (uInt)best_len; return s->lookahead; } #endif /* ASMV */ #else /* FASTEST */ /* --------------------------------------------------------------------------- * Optimized version for FASTEST only */ local uInt longest_match(s, cur_match) deflate_state *s; IPos cur_match; /* current match */ { register Bytef *scan = s->window + s->strstart; /* current string */ register Bytef *match; /* matched string */ register int len; /* length of current match */ register Bytef *strend = s->window + s->strstart + MAX_MATCH; /* The code is optimized for HASH_BITS >= 8 and MAX_MATCH-2 multiple of 16. * It is easy to get rid of this optimization if necessary. */ Assert(s->hash_bits >= 8 && MAX_MATCH == 258, "Code too clever"); Assert((ulg)s->strstart <= s->window_size-MIN_LOOKAHEAD, "need lookahead"); Assert(cur_match < s->strstart, "no future"); match = s->window + cur_match; /* Return failure if the match length is less than 2: */ if (match[0] != scan[0] || match[1] != scan[1]) return MIN_MATCH-1; /* The check at best_len-1 can be removed because it will be made * again later. (This heuristic is not always a win.) * It is not necessary to compare scan[2] and match[2] since they * are always equal when the other bytes match, given that * the hash keys are equal and that HASH_BITS >= 8. */ scan += 2, match += 2; Assert(*scan == *match, "match[2]?"); /* We check for insufficient lookahead only every 8th comparison; * the 256th check will be made at strstart+258. */ do { } while (*++scan == *++match && *++scan == *++match && *++scan == *++match && *++scan == *++match && *++scan == *++match && *++scan == *++match && *++scan == *++match && *++scan == *++match && scan < strend); Assert(scan <= s->window+(unsigned)(s->window_size-1), "wild scan"); len = MAX_MATCH - (int)(strend - scan); if (len < MIN_MATCH) return MIN_MATCH - 1; s->match_start = cur_match; return (uInt)len <= s->lookahead ? (uInt)len : s->lookahead; } #endif /* FASTEST */ #ifdef DEBUG /* =========================================================================== * Check that the match at match_start is indeed a match. */ local void check_match(s, start, match, length) deflate_state *s; IPos start, match; int length; { /* check that the match is indeed a match */ if (zmemcmp(s->window + match, s->window + start, length) != EQUAL) { fprintf(stderr, " start %u, match %u, length %d\n", start, match, length); do { fprintf(stderr, "%c%c", s->window[match++], s->window[start++]); } while (--length != 0); z_error("invalid match"); } if (z_verbose > 1) { fprintf(stderr,"\\[%d,%d]", start-match, length); do { putc(s->window[start++], stderr); } while (--length != 0); } } #else # define check_match(s, start, match, length) #endif /* DEBUG */ /* =========================================================================== * Fill the window when the lookahead becomes insufficient. * Updates strstart and lookahead. * * IN assertion: lookahead < MIN_LOOKAHEAD * OUT assertions: strstart <= window_size-MIN_LOOKAHEAD * At least one byte has been read, or avail_in == 0; reads are * performed for at least two bytes (required for the zip translate_eol * option -- not supported here). */ local void fill_window(s) deflate_state *s; { register unsigned n, m; register Posf *p; unsigned more; /* Amount of free space at the end of the window. */ uInt wsize = s->w_size; do { more = (unsigned)(s->window_size -(ulg)s->lookahead -(ulg)s->strstart); /* Deal with !@#$% 64K limit: */ if (sizeof(int) <= 2) { if (more == 0 && s->strstart == 0 && s->lookahead == 0) { more = wsize; } else if (more == (unsigned)(-1)) { /* Very unlikely, but possible on 16 bit machine if * strstart == 0 && lookahead == 1 (input done a byte at time) */ more--; } } /* If the window is almost full and there is insufficient lookahead, * move the upper half to the lower one to make room in the upper half. */ if (s->strstart >= wsize+MAX_DIST(s)) { zmemcpy(s->window, s->window+wsize, (unsigned)wsize); s->match_start -= wsize; s->strstart -= wsize; /* we now have strstart >= MAX_DIST */ s->block_start -= (long) wsize; /* Slide the hash table (could be avoided with 32 bit values at the expense of memory usage). We slide even when level == 0 to keep the hash table consistent if we switch back to level > 0 later. (Using level 0 permanently is not an optimal usage of zlib, so we don't care about this pathological case.) */ n = s->hash_size; p = &s->head[n]; do { m = *--p; *p = (Pos)(m >= wsize ? m-wsize : NIL); } while (--n); n = wsize; #ifndef FASTEST p = &s->prev[n]; do { m = *--p; *p = (Pos)(m >= wsize ? m-wsize : NIL); /* If n is not on any hash chain, prev[n] is garbage but * its value will never be used. */ } while (--n); #endif more += wsize; } if (s->strm->avail_in == 0) return; /* If there was no sliding: * strstart <= WSIZE+MAX_DIST-1 && lookahead <= MIN_LOOKAHEAD - 1 && * more == window_size - lookahead - strstart * => more >= window_size - (MIN_LOOKAHEAD-1 + WSIZE + MAX_DIST-1) * => more >= window_size - 2*WSIZE + 2 * In the BIG_MEM or MMAP case (not yet supported), * window_size == input_size + MIN_LOOKAHEAD && * strstart + s->lookahead <= input_size => more >= MIN_LOOKAHEAD. * Otherwise, window_size == 2*WSIZE so more >= 2. * If there was sliding, more >= WSIZE. So in all cases, more >= 2. */ Assert(more >= 2, "more < 2"); n = read_buf(s->strm, s->window + s->strstart + s->lookahead, more); s->lookahead += n; /* Initialize the hash value now that we have some input: */ if (s->lookahead >= MIN_MATCH) { s->ins_h = s->window[s->strstart]; UPDATE_HASH(s, s->ins_h, s->window[s->strstart+1]); #if MIN_MATCH != 3 Call UPDATE_HASH() MIN_MATCH-3 more times #endif } /* If the whole input has less than MIN_MATCH bytes, ins_h is garbage, * but this is not important since only literal bytes will be emitted. */ } while (s->lookahead < MIN_LOOKAHEAD && s->strm->avail_in != 0); /* If the WIN_INIT bytes after the end of the current data have never been * written, then zero those bytes in order to avoid memory check reports of * the use of uninitialized (or uninitialised as Julian writes) bytes by * the longest match routines. Update the high water mark for the next * time through here. WIN_INIT is set to MAX_MATCH since the longest match * routines allow scanning to strstart + MAX_MATCH, ignoring lookahead. */ if (s->high_water < s->window_size) { ulg curr = s->strstart + (ulg)(s->lookahead); ulg init; if (s->high_water < curr) { /* Previous high water mark below current data -- zero WIN_INIT * bytes or up to end of window, whichever is less. */ init = s->window_size - curr; if (init > WIN_INIT) init = WIN_INIT; zmemzero(s->window + curr, (unsigned)init); s->high_water = curr + init; } else if (s->high_water < (ulg)curr + WIN_INIT) { /* High water mark at or above current data, but below current data * plus WIN_INIT -- zero out to current data plus WIN_INIT, or up * to end of window, whichever is less. */ init = (ulg)curr + WIN_INIT - s->high_water; if (init > s->window_size - s->high_water) init = s->window_size - s->high_water; zmemzero(s->window + s->high_water, (unsigned)init); s->high_water += init; } } } /* =========================================================================== * Flush the current block, with given end-of-file flag. * IN assertion: strstart is set to the end of the current match. */ #define FLUSH_BLOCK_ONLY(s, last) { \ _tr_flush_block(s, (s->block_start >= 0L ? \ (charf *)&s->window[(unsigned)s->block_start] : \ (charf *)Z_NULL), \ (ulg)((long)s->strstart - s->block_start), \ (last)); \ s->block_start = s->strstart; \ flush_pending(s->strm); \ Tracev((stderr,"[FLUSH]")); \ } /* Same but force premature exit if necessary. */ #define FLUSH_BLOCK(s, last) { \ FLUSH_BLOCK_ONLY(s, last); \ if (s->strm->avail_out == 0) return (last) ? finish_started : need_more; \ } /* =========================================================================== * Copy without compression as much as possible from the input stream, return * the current block state. * This function does not insert new strings in the dictionary since * uncompressible data is probably not useful. This function is used * only for the level=0 compression option. * NOTE: this function should be optimized to avoid extra copying from * window to pending_buf. */ local block_state deflate_stored(s, flush) deflate_state *s; int flush; { /* Stored blocks are limited to 0xffff bytes, pending_buf is limited * to pending_buf_size, and each stored block has a 5 byte header: */ ulg max_block_size = 0xffff; ulg max_start; if (max_block_size > s->pending_buf_size - 5) { max_block_size = s->pending_buf_size - 5; } /* Copy as much as possible from input to output: */ for (;;) { /* Fill the window as much as possible: */ if (s->lookahead <= 1) { Assert(s->strstart < s->w_size+MAX_DIST(s) || s->block_start >= (long)s->w_size, "slide too late"); fill_window(s); if (s->lookahead == 0 && flush == Z_NO_FLUSH) return need_more; if (s->lookahead == 0) break; /* flush the current block */ } Assert(s->block_start >= 0L, "block gone"); s->strstart += s->lookahead; s->lookahead = 0; /* Emit a stored block if pending_buf will be full: */ max_start = s->block_start + max_block_size; if (s->strstart == 0 || (ulg)s->strstart >= max_start) { /* strstart == 0 is possible when wraparound on 16-bit machine */ s->lookahead = (uInt)(s->strstart - max_start); s->strstart = (uInt)max_start; FLUSH_BLOCK(s, 0); } /* Flush if we may have to slide, otherwise block_start may become * negative and the data will be gone: */ if (s->strstart - (uInt)s->block_start >= MAX_DIST(s)) { FLUSH_BLOCK(s, 0); } } FLUSH_BLOCK(s, flush == Z_FINISH); return flush == Z_FINISH ? finish_done : block_done; } /* =========================================================================== * Compress as much as possible from the input stream, return the current * block state. * This function does not perform lazy evaluation of matches and inserts * new strings in the dictionary only for unmatched strings or for short * matches. It is used only for the fast compression options. */ local block_state deflate_fast(s, flush) deflate_state *s; int flush; { IPos hash_head; /* head of the hash chain */ int bflush; /* set if current block must be flushed */ for (;;) { /* Make sure that we always have enough lookahead, except * at the end of the input file. We need MAX_MATCH bytes * for the next match, plus MIN_MATCH bytes to insert the * string following the next match. */ if (s->lookahead < MIN_LOOKAHEAD) { fill_window(s); if (s->lookahead < MIN_LOOKAHEAD && flush == Z_NO_FLUSH) { return need_more; } if (s->lookahead == 0) break; /* flush the current block */ } /* Insert the string window[strstart .. strstart+2] in the * dictionary, and set hash_head to the head of the hash chain: */ hash_head = NIL; if (s->lookahead >= MIN_MATCH) { INSERT_STRING(s, s->strstart, hash_head); } /* Find the longest match, discarding those <= prev_length. * At this point we have always match_length < MIN_MATCH */ if (hash_head != NIL && s->strstart - hash_head <= MAX_DIST(s)) { /* To simplify the code, we prevent matches with the string * of window index 0 (in particular we have to avoid a match * of the string with itself at the start of the input file). */ s->match_length = longest_match (s, hash_head); /* longest_match() sets match_start */ } if (s->match_length >= MIN_MATCH) { check_match(s, s->strstart, s->match_start, s->match_length); _tr_tally_dist(s, s->strstart - s->match_start, s->match_length - MIN_MATCH, bflush); s->lookahead -= s->match_length; /* Insert new strings in the hash table only if the match length * is not too large. This saves time but degrades compression. */ #ifndef FASTEST if (s->match_length <= s->max_insert_length && s->lookahead >= MIN_MATCH) { s->match_length--; /* string at strstart already in table */ do { s->strstart++; INSERT_STRING(s, s->strstart, hash_head); /* strstart never exceeds WSIZE-MAX_MATCH, so there are * always MIN_MATCH bytes ahead. */ } while (--s->match_length != 0); s->strstart++; } else #endif { s->strstart += s->match_length; s->match_length = 0; s->ins_h = s->window[s->strstart]; UPDATE_HASH(s, s->ins_h, s->window[s->strstart+1]); #if MIN_MATCH != 3 Call UPDATE_HASH() MIN_MATCH-3 more times #endif /* If lookahead < MIN_MATCH, ins_h is garbage, but it does not * matter since it will be recomputed at next deflate call. */ } } else { /* No match, output a literal byte */ Tracevv((stderr,"%c", s->window[s->strstart])); _tr_tally_lit (s, s->window[s->strstart], bflush); s->lookahead--; s->strstart++; } if (bflush) FLUSH_BLOCK(s, 0); } FLUSH_BLOCK(s, flush == Z_FINISH); return flush == Z_FINISH ? finish_done : block_done; } #ifndef FASTEST /* =========================================================================== * Same as above, but achieves better compression. We use a lazy * evaluation for matches: a match is finally adopted only if there is * no better match at the next window position. */ local block_state deflate_slow(s, flush) deflate_state *s; int flush; { IPos hash_head; /* head of hash chain */ int bflush; /* set if current block must be flushed */ /* Process the input block. */ for (;;) { /* Make sure that we always have enough lookahead, except * at the end of the input file. We need MAX_MATCH bytes * for the next match, plus MIN_MATCH bytes to insert the * string following the next match. */ if (s->lookahead < MIN_LOOKAHEAD) { fill_window(s); if (s->lookahead < MIN_LOOKAHEAD && flush == Z_NO_FLUSH) { return need_more; } if (s->lookahead == 0) break; /* flush the current block */ } /* Insert the string window[strstart .. strstart+2] in the * dictionary, and set hash_head to the head of the hash chain: */ hash_head = NIL; if (s->lookahead >= MIN_MATCH) { INSERT_STRING(s, s->strstart, hash_head); } /* Find the longest match, discarding those <= prev_length. */ s->prev_length = s->match_length, s->prev_match = s->match_start; s->match_length = MIN_MATCH-1; if (hash_head != NIL && s->prev_length < s->max_lazy_match && s->strstart - hash_head <= MAX_DIST(s)) { /* To simplify the code, we prevent matches with the string * of window index 0 (in particular we have to avoid a match * of the string with itself at the start of the input file). */ s->match_length = longest_match (s, hash_head); /* longest_match() sets match_start */ if (s->match_length <= 5 && (s->strategy == Z_FILTERED #if TOO_FAR <= 32767 || (s->match_length == MIN_MATCH && s->strstart - s->match_start > TOO_FAR) #endif )) { /* If prev_match is also MIN_MATCH, match_start is garbage * but we will ignore the current match anyway. */ s->match_length = MIN_MATCH-1; } } /* If there was a match at the previous step and the current * match is not better, output the previous match: */ if (s->prev_length >= MIN_MATCH && s->match_length <= s->prev_length) { uInt max_insert = s->strstart + s->lookahead - MIN_MATCH; /* Do not insert strings in hash table beyond this. */ check_match(s, s->strstart-1, s->prev_match, s->prev_length); _tr_tally_dist(s, s->strstart -1 - s->prev_match, s->prev_length - MIN_MATCH, bflush); /* Insert in hash table all strings up to the end of the match. * strstart-1 and strstart are already inserted. If there is not * enough lookahead, the last two strings are not inserted in * the hash table. */ s->lookahead -= s->prev_length-1; s->prev_length -= 2; do { if (++s->strstart <= max_insert) { INSERT_STRING(s, s->strstart, hash_head); } } while (--s->prev_length != 0); s->match_available = 0; s->match_length = MIN_MATCH-1; s->strstart++; if (bflush) FLUSH_BLOCK(s, 0); } else if (s->match_available) { /* If there was no match at the previous position, output a * single literal. If there was a match but the current match * is longer, truncate the previous match to a single literal. */ Tracevv((stderr,"%c", s->window[s->strstart-1])); _tr_tally_lit(s, s->window[s->strstart-1], bflush); if (bflush) { FLUSH_BLOCK_ONLY(s, 0); } s->strstart++; s->lookahead--; if (s->strm->avail_out == 0) return need_more; } else { /* There is no previous match to compare with, wait for * the next step to decide. */ s->match_available = 1; s->strstart++; s->lookahead--; } } Assert (flush != Z_NO_FLUSH, "no flush?"); if (s->match_available) { Tracevv((stderr,"%c", s->window[s->strstart-1])); _tr_tally_lit(s, s->window[s->strstart-1], bflush); s->match_available = 0; } FLUSH_BLOCK(s, flush == Z_FINISH); return flush == Z_FINISH ? finish_done : block_done; } #endif /* FASTEST */ /* =========================================================================== * For Z_RLE, simply look for runs of bytes, generate matches only of distance * one. Do not maintain a hash table. (It will be regenerated if this run of * deflate switches away from Z_RLE.) */ local block_state deflate_rle(s, flush) deflate_state *s; int flush; { int bflush; /* set if current block must be flushed */ uInt prev; /* byte at distance one to match */ Bytef *scan, *strend; /* scan goes up to strend for length of run */ for (;;) { /* Make sure that we always have enough lookahead, except * at the end of the input file. We need MAX_MATCH bytes * for the longest encodable run. */ if (s->lookahead < MAX_MATCH) { fill_window(s); if (s->lookahead < MAX_MATCH && flush == Z_NO_FLUSH) { return need_more; } if (s->lookahead == 0) break; /* flush the current block */ } /* See how many times the previous byte repeats */ s->match_length = 0; if (s->lookahead >= MIN_MATCH && s->strstart > 0) { scan = s->window + s->strstart - 1; prev = *scan; if (prev == *++scan && prev == *++scan && prev == *++scan) { strend = s->window + s->strstart + MAX_MATCH; do { } while (prev == *++scan && prev == *++scan && prev == *++scan && prev == *++scan && prev == *++scan && prev == *++scan && prev == *++scan && prev == *++scan && scan < strend); s->match_length = MAX_MATCH - (int)(strend - scan); if (s->match_length > s->lookahead) s->match_length = s->lookahead; } } /* Emit match if have run of MIN_MATCH or longer, else emit literal */ if (s->match_length >= MIN_MATCH) { check_match(s, s->strstart, s->strstart - 1, s->match_length); _tr_tally_dist(s, 1, s->match_length - MIN_MATCH, bflush); s->lookahead -= s->match_length; s->strstart += s->match_length; s->match_length = 0; } else { /* No match, output a literal byte */ Tracevv((stderr,"%c", s->window[s->strstart])); _tr_tally_lit (s, s->window[s->strstart], bflush); s->lookahead--; s->strstart++; } if (bflush) FLUSH_BLOCK(s, 0); } FLUSH_BLOCK(s, flush == Z_FINISH); return flush == Z_FINISH ? finish_done : block_done; } /* =========================================================================== * For Z_HUFFMAN_ONLY, do not look for matches. Do not maintain a hash table. * (It will be regenerated if this run of deflate switches away from Huffman.) */ local block_state deflate_huff(s, flush) deflate_state *s; int flush; { int bflush; /* set if current block must be flushed */ for (;;) { /* Make sure that we have a literal to write. */ if (s->lookahead == 0) { fill_window(s); if (s->lookahead == 0) { if (flush == Z_NO_FLUSH) return need_more; break; /* flush the current block */ } } /* Output a literal byte */ s->match_length = 0; Tracevv((stderr,"%c", s->window[s->strstart])); _tr_tally_lit (s, s->window[s->strstart], bflush); s->lookahead--; s->strstart++; if (bflush) FLUSH_BLOCK(s, 0); } FLUSH_BLOCK(s, flush == Z_FINISH); return flush == Z_FINISH ? finish_done : block_done; } healpy-1.8.1/cfitsio/zlib/inffast.h0000654000175000017530000000065312272000775017624 0ustar zoncaplanck00000000000000/* inffast.h -- header to use inffast.c * Copyright (C) 1995-2003, 2010 Mark Adler * For conditions of distribution and use, see copyright notice in zlib.h */ /* WARNING: this file should *not* be used by applications. It is part of the implementation of the compression library and is subject to change. Applications should only use zlib.h. */ void ZLIB_INTERNAL inflate_fast OF((z_streamp strm, unsigned start)); healpy-1.8.1/cfitsio/zlib/crc32.c0000654000175000017530000003254012272000775017101 0ustar zoncaplanck00000000000000/* crc32.c -- compute the CRC-32 of a data stream * Copyright (C) 1995-2006, 2010 Mark Adler * For conditions of distribution and use, see copyright notice in zlib.h * * Thanks to Rodney Brown for his contribution of faster * CRC methods: exclusive-oring 32 bits of data at a time, and pre-computing * tables for updating the shift register in one step with three exclusive-ors * instead of four steps with four exclusive-ors. This results in about a * factor of two increase in speed on a Power PC G4 (PPC7455) using gcc -O3. */ /* Note on the use of DYNAMIC_CRC_TABLE: there is no mutex or semaphore protection on the static variables used to control the first-use generation of the crc tables. Therefore, if you #define DYNAMIC_CRC_TABLE, you should first call get_crc_table() to initialize the tables before allowing more than one thread to use crc32(). */ #ifdef MAKECRCH # include # ifndef DYNAMIC_CRC_TABLE # define DYNAMIC_CRC_TABLE # endif /* !DYNAMIC_CRC_TABLE */ #endif /* MAKECRCH */ #include "zutil.h" /* for STDC and FAR definitions */ #define local static /* Find a four-byte integer type for crc32_little() and crc32_big(). */ #ifndef NOBYFOUR # ifdef STDC /* need ANSI C limits.h to determine sizes */ # include # define BYFOUR # if (UINT_MAX == 0xffffffffUL) typedef unsigned int u4; # else # if (ULONG_MAX == 0xffffffffUL) typedef unsigned long u4; # else # if (USHRT_MAX == 0xffffffffUL) typedef unsigned short u4; # else # undef BYFOUR /* can't find a four-byte integer type! */ # endif # endif # endif # endif /* STDC */ #endif /* !NOBYFOUR */ /* Definitions for doing the crc four data bytes at a time. */ #ifdef BYFOUR # define REV(w) ((((w)>>24)&0xff)+(((w)>>8)&0xff00)+ \ (((w)&0xff00)<<8)+(((w)&0xff)<<24)) local unsigned long crc32_little OF((unsigned long, const unsigned char FAR *, unsigned)); local unsigned long crc32_big OF((unsigned long, const unsigned char FAR *, unsigned)); # define TBLS 8 #else # define TBLS 1 #endif /* BYFOUR */ /* Local functions for crc concatenation */ local unsigned long gf2_matrix_times OF((unsigned long *mat, unsigned long vec)); local void gf2_matrix_square OF((unsigned long *square, unsigned long *mat)); local uLong crc32_combine_(uLong crc1, uLong crc2, z_off64_t len2); #ifdef DYNAMIC_CRC_TABLE local volatile int crc_table_empty = 1; local unsigned long FAR crc_table[TBLS][256]; local void make_crc_table OF((void)); #ifdef MAKECRCH local void write_table OF((FILE *, const unsigned long FAR *)); #endif /* MAKECRCH */ /* Generate tables for a byte-wise 32-bit CRC calculation on the polynomial: x^32+x^26+x^23+x^22+x^16+x^12+x^11+x^10+x^8+x^7+x^5+x^4+x^2+x+1. Polynomials over GF(2) are represented in binary, one bit per coefficient, with the lowest powers in the most significant bit. Then adding polynomials is just exclusive-or, and multiplying a polynomial by x is a right shift by one. If we call the above polynomial p, and represent a byte as the polynomial q, also with the lowest power in the most significant bit (so the byte 0xb1 is the polynomial x^7+x^3+x+1), then the CRC is (q*x^32) mod p, where a mod b means the remainder after dividing a by b. This calculation is done using the shift-register method of multiplying and taking the remainder. The register is initialized to zero, and for each incoming bit, x^32 is added mod p to the register if the bit is a one (where x^32 mod p is p+x^32 = x^26+...+1), and the register is multiplied mod p by x (which is shifting right by one and adding x^32 mod p if the bit shifted out is a one). We start with the highest power (least significant bit) of q and repeat for all eight bits of q. The first table is simply the CRC of all possible eight bit values. This is all the information needed to generate CRCs on data a byte at a time for all combinations of CRC register values and incoming bytes. The remaining tables allow for word-at-a-time CRC calculation for both big-endian and little- endian machines, where a word is four bytes. */ local void make_crc_table() { unsigned long c; int n, k; unsigned long poly; /* polynomial exclusive-or pattern */ /* terms of polynomial defining this crc (except x^32): */ static volatile int first = 1; /* flag to limit concurrent making */ static const unsigned char p[] = {0,1,2,4,5,7,8,10,11,12,16,22,23,26}; /* See if another task is already doing this (not thread-safe, but better than nothing -- significantly reduces duration of vulnerability in case the advice about DYNAMIC_CRC_TABLE is ignored) */ if (first) { first = 0; /* make exclusive-or pattern from polynomial (0xedb88320UL) */ poly = 0UL; for (n = 0; n < sizeof(p)/sizeof(unsigned char); n++) poly |= 1UL << (31 - p[n]); /* generate a crc for every 8-bit value */ for (n = 0; n < 256; n++) { c = (unsigned long)n; for (k = 0; k < 8; k++) c = c & 1 ? poly ^ (c >> 1) : c >> 1; crc_table[0][n] = c; } #ifdef BYFOUR /* generate crc for each value followed by one, two, and three zeros, and then the byte reversal of those as well as the first table */ for (n = 0; n < 256; n++) { c = crc_table[0][n]; crc_table[4][n] = REV(c); for (k = 1; k < 4; k++) { c = crc_table[0][c & 0xff] ^ (c >> 8); crc_table[k][n] = c; crc_table[k + 4][n] = REV(c); } } #endif /* BYFOUR */ crc_table_empty = 0; } else { /* not first */ /* wait for the other guy to finish (not efficient, but rare) */ while (crc_table_empty) ; } #ifdef MAKECRCH /* write out CRC tables to crc32.h */ { FILE *out; out = fopen("crc32.h", "w"); if (out == NULL) return; fprintf(out, "/* crc32.h -- tables for rapid CRC calculation\n"); fprintf(out, " * Generated automatically by crc32.c\n */\n\n"); fprintf(out, "local const unsigned long FAR "); fprintf(out, "crc_table[TBLS][256] =\n{\n {\n"); write_table(out, crc_table[0]); # ifdef BYFOUR fprintf(out, "#ifdef BYFOUR\n"); for (k = 1; k < 8; k++) { fprintf(out, " },\n {\n"); write_table(out, crc_table[k]); } fprintf(out, "#endif\n"); # endif /* BYFOUR */ fprintf(out, " }\n};\n"); fclose(out); } #endif /* MAKECRCH */ } #ifdef MAKECRCH local void write_table(out, table) FILE *out; const unsigned long FAR *table; { int n; for (n = 0; n < 256; n++) fprintf(out, "%s0x%08lxUL%s", n % 5 ? "" : " ", table[n], n == 255 ? "\n" : (n % 5 == 4 ? ",\n" : ", ")); } #endif /* MAKECRCH */ #else /* !DYNAMIC_CRC_TABLE */ /* ======================================================================== * Tables of CRC-32s of all single-byte values, made by make_crc_table(). */ #include "crc32.h" #endif /* DYNAMIC_CRC_TABLE */ /* ========================================================================= * This function can be used by asm versions of crc32() */ const unsigned long FAR * ZEXPORT get_crc_table() { #ifdef DYNAMIC_CRC_TABLE if (crc_table_empty) make_crc_table(); #endif /* DYNAMIC_CRC_TABLE */ return (const unsigned long FAR *)crc_table; } /* ========================================================================= */ #define DO1 crc = crc_table[0][((int)crc ^ (*buf++)) & 0xff] ^ (crc >> 8) #define DO8 DO1; DO1; DO1; DO1; DO1; DO1; DO1; DO1 /* ========================================================================= */ unsigned long ZEXPORT crc32(crc, buf, len) unsigned long crc; const unsigned char FAR *buf; uInt len; { if (buf == Z_NULL) return 0UL; #ifdef DYNAMIC_CRC_TABLE if (crc_table_empty) make_crc_table(); #endif /* DYNAMIC_CRC_TABLE */ #ifdef BYFOUR if (sizeof(void *) == sizeof(ptrdiff_t)) { u4 endian; endian = 1; if (*((unsigned char *)(&endian))) return crc32_little(crc, buf, len); else return crc32_big(crc, buf, len); } #endif /* BYFOUR */ crc = crc ^ 0xffffffffUL; while (len >= 8) { DO8; len -= 8; } if (len) do { DO1; } while (--len); return crc ^ 0xffffffffUL; } #ifdef BYFOUR /* ========================================================================= */ #define DOLIT4 c ^= *buf4++; \ c = crc_table[3][c & 0xff] ^ crc_table[2][(c >> 8) & 0xff] ^ \ crc_table[1][(c >> 16) & 0xff] ^ crc_table[0][c >> 24] #define DOLIT32 DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4 /* ========================================================================= */ local unsigned long crc32_little(crc, buf, len) unsigned long crc; const unsigned char FAR *buf; unsigned len; { register u4 c; register const u4 FAR *buf4; c = (u4)crc; c = ~c; while (len && ((ptrdiff_t)buf & 3)) { c = crc_table[0][(c ^ *buf++) & 0xff] ^ (c >> 8); len--; } buf4 = (const u4 FAR *)(const void FAR *)buf; while (len >= 32) { DOLIT32; len -= 32; } while (len >= 4) { DOLIT4; len -= 4; } buf = (const unsigned char FAR *)buf4; if (len) do { c = crc_table[0][(c ^ *buf++) & 0xff] ^ (c >> 8); } while (--len); c = ~c; return (unsigned long)c; } /* ========================================================================= */ #define DOBIG4 c ^= *++buf4; \ c = crc_table[4][c & 0xff] ^ crc_table[5][(c >> 8) & 0xff] ^ \ crc_table[6][(c >> 16) & 0xff] ^ crc_table[7][c >> 24] #define DOBIG32 DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4 /* ========================================================================= */ local unsigned long crc32_big(crc, buf, len) unsigned long crc; const unsigned char FAR *buf; unsigned len; { register u4 c; register const u4 FAR *buf4; c = REV((u4)crc); c = ~c; while (len && ((ptrdiff_t)buf & 3)) { c = crc_table[4][(c >> 24) ^ *buf++] ^ (c << 8); len--; } buf4 = (const u4 FAR *)(const void FAR *)buf; buf4--; while (len >= 32) { DOBIG32; len -= 32; } while (len >= 4) { DOBIG4; len -= 4; } buf4++; buf = (const unsigned char FAR *)buf4; if (len) do { c = crc_table[4][(c >> 24) ^ *buf++] ^ (c << 8); } while (--len); c = ~c; return (unsigned long)(REV(c)); } #endif /* BYFOUR */ #define GF2_DIM 32 /* dimension of GF(2) vectors (length of CRC) */ /* ========================================================================= */ local unsigned long gf2_matrix_times(mat, vec) unsigned long *mat; unsigned long vec; { unsigned long sum; sum = 0; while (vec) { if (vec & 1) sum ^= *mat; vec >>= 1; mat++; } return sum; } /* ========================================================================= */ local void gf2_matrix_square(square, mat) unsigned long *square; unsigned long *mat; { int n; for (n = 0; n < GF2_DIM; n++) square[n] = gf2_matrix_times(mat, mat[n]); } /* ========================================================================= */ local uLong crc32_combine_(crc1, crc2, len2) uLong crc1; uLong crc2; z_off64_t len2; { int n; unsigned long row; unsigned long even[GF2_DIM]; /* even-power-of-two zeros operator */ unsigned long odd[GF2_DIM]; /* odd-power-of-two zeros operator */ /* degenerate case (also disallow negative lengths) */ if (len2 <= 0) return crc1; /* put operator for one zero bit in odd */ odd[0] = 0xedb88320UL; /* CRC-32 polynomial */ row = 1; for (n = 1; n < GF2_DIM; n++) { odd[n] = row; row <<= 1; } /* put operator for two zero bits in even */ gf2_matrix_square(even, odd); /* put operator for four zero bits in odd */ gf2_matrix_square(odd, even); /* apply len2 zeros to crc1 (first square will put the operator for one zero byte, eight zero bits, in even) */ do { /* apply zeros operator for this bit of len2 */ gf2_matrix_square(even, odd); if (len2 & 1) crc1 = gf2_matrix_times(even, crc1); len2 >>= 1; /* if no more bits set, then done */ if (len2 == 0) break; /* another iteration of the loop with odd and even swapped */ gf2_matrix_square(odd, even); if (len2 & 1) crc1 = gf2_matrix_times(odd, crc1); len2 >>= 1; /* if no more bits set, then done */ } while (len2 != 0); /* return combined crc */ crc1 ^= crc2; return crc1; } /* ========================================================================= */ uLong ZEXPORT crc32_combine(crc1, crc2, len2) uLong crc1; uLong crc2; z_off_t len2; { return crc32_combine_(crc1, crc2, len2); } uLong ZEXPORT crc32_combine64(crc1, crc2, len2) uLong crc1; uLong crc2; z_off64_t len2; { return crc32_combine_(crc1, crc2, len2); } healpy-1.8.1/cfitsio/zlib/inftrees.c0000654000175000017530000003271112272000775020004 0ustar zoncaplanck00000000000000/* inftrees.c -- generate Huffman trees for efficient decoding * Copyright (C) 1995-2010 Mark Adler * For conditions of distribution and use, see copyright notice in zlib.h */ #include "zutil.h" #include "inftrees.h" #define MAXBITS 15 const char inflate_copyright[] = " inflate 1.2.5 Copyright 1995-2010 Mark Adler "; /* If you use the zlib library in a product, an acknowledgment is welcome in the documentation of your product. If for some reason you cannot include such an acknowledgment, I would appreciate that you keep this copyright string in the executable of your product. */ /* Build a set of tables to decode the provided canonical Huffman code. The code lengths are lens[0..codes-1]. The result starts at *table, whose indices are 0..2^bits-1. work is a writable array of at least lens shorts, which is used as a work area. type is the type of code to be generated, CODES, LENS, or DISTS. On return, zero is success, -1 is an invalid code, and +1 means that ENOUGH isn't enough. table on return points to the next available entry's address. bits is the requested root table index bits, and on return it is the actual root table index bits. It will differ if the request is greater than the longest code or if it is less than the shortest code. */ int ZLIB_INTERNAL inflate_table(type, lens, codes, table, bits, work) codetype type; unsigned short FAR *lens; unsigned codes; code FAR * FAR *table; unsigned FAR *bits; unsigned short FAR *work; { unsigned len; /* a code's length in bits */ unsigned sym; /* index of code symbols */ unsigned min, max; /* minimum and maximum code lengths */ unsigned root; /* number of index bits for root table */ unsigned curr; /* number of index bits for current table */ unsigned drop; /* code bits to drop for sub-table */ int left; /* number of prefix codes available */ unsigned used; /* code entries in table used */ unsigned huff; /* Huffman code */ unsigned incr; /* for incrementing code, index */ unsigned fill; /* index for replicating entries */ unsigned low; /* low bits for current root entry */ unsigned mask; /* mask for low root bits */ code here; /* table entry for duplication */ code FAR *next; /* next available space in table */ const unsigned short FAR *base; /* base value table to use */ const unsigned short FAR *extra; /* extra bits table to use */ int end; /* use base and extra for symbol > end */ unsigned short count[MAXBITS+1]; /* number of codes of each length */ unsigned short offs[MAXBITS+1]; /* offsets in table for each length */ static const unsigned short lbase[31] = { /* Length codes 257..285 base */ 3, 4, 5, 6, 7, 8, 9, 10, 11, 13, 15, 17, 19, 23, 27, 31, 35, 43, 51, 59, 67, 83, 99, 115, 131, 163, 195, 227, 258, 0, 0}; static const unsigned short lext[31] = { /* Length codes 257..285 extra */ 16, 16, 16, 16, 16, 16, 16, 16, 17, 17, 17, 17, 18, 18, 18, 18, 19, 19, 19, 19, 20, 20, 20, 20, 21, 21, 21, 21, 16, 73, 195}; static const unsigned short dbase[32] = { /* Distance codes 0..29 base */ 1, 2, 3, 4, 5, 7, 9, 13, 17, 25, 33, 49, 65, 97, 129, 193, 257, 385, 513, 769, 1025, 1537, 2049, 3073, 4097, 6145, 8193, 12289, 16385, 24577, 0, 0}; static const unsigned short dext[32] = { /* Distance codes 0..29 extra */ 16, 16, 16, 16, 17, 17, 18, 18, 19, 19, 20, 20, 21, 21, 22, 22, 23, 23, 24, 24, 25, 25, 26, 26, 27, 27, 28, 28, 29, 29, 64, 64}; /* Process a set of code lengths to create a canonical Huffman code. The code lengths are lens[0..codes-1]. Each length corresponds to the symbols 0..codes-1. The Huffman code is generated by first sorting the symbols by length from short to long, and retaining the symbol order for codes with equal lengths. Then the code starts with all zero bits for the first code of the shortest length, and the codes are integer increments for the same length, and zeros are appended as the length increases. For the deflate format, these bits are stored backwards from their more natural integer increment ordering, and so when the decoding tables are built in the large loop below, the integer codes are incremented backwards. This routine assumes, but does not check, that all of the entries in lens[] are in the range 0..MAXBITS. The caller must assure this. 1..MAXBITS is interpreted as that code length. zero means that that symbol does not occur in this code. The codes are sorted by computing a count of codes for each length, creating from that a table of starting indices for each length in the sorted table, and then entering the symbols in order in the sorted table. The sorted table is work[], with that space being provided by the caller. The length counts are used for other purposes as well, i.e. finding the minimum and maximum length codes, determining if there are any codes at all, checking for a valid set of lengths, and looking ahead at length counts to determine sub-table sizes when building the decoding tables. */ /* accumulate lengths for codes (assumes lens[] all in 0..MAXBITS) */ for (len = 0; len <= MAXBITS; len++) count[len] = 0; for (sym = 0; sym < codes; sym++) count[lens[sym]]++; /* bound code lengths, force root to be within code lengths */ root = *bits; for (max = MAXBITS; max >= 1; max--) if (count[max] != 0) break; if (root > max) root = max; if (max == 0) { /* no symbols to code at all */ here.op = (unsigned char)64; /* invalid code marker */ here.bits = (unsigned char)1; here.val = (unsigned short)0; *(*table)++ = here; /* make a table to force an error */ *(*table)++ = here; *bits = 1; return 0; /* no symbols, but wait for decoding to report error */ } for (min = 1; min < max; min++) if (count[min] != 0) break; if (root < min) root = min; /* check for an over-subscribed or incomplete set of lengths */ left = 1; for (len = 1; len <= MAXBITS; len++) { left <<= 1; left -= count[len]; if (left < 0) return -1; /* over-subscribed */ } if (left > 0 && (type == CODES || max != 1)) return -1; /* incomplete set */ /* generate offsets into symbol table for each length for sorting */ offs[1] = 0; for (len = 1; len < MAXBITS; len++) offs[len + 1] = offs[len] + count[len]; /* sort symbols by length, by symbol order within each length */ for (sym = 0; sym < codes; sym++) if (lens[sym] != 0) work[offs[lens[sym]]++] = (unsigned short)sym; /* Create and fill in decoding tables. In this loop, the table being filled is at next and has curr index bits. The code being used is huff with length len. That code is converted to an index by dropping drop bits off of the bottom. For codes where len is less than drop + curr, those top drop + curr - len bits are incremented through all values to fill the table with replicated entries. root is the number of index bits for the root table. When len exceeds root, sub-tables are created pointed to by the root entry with an index of the low root bits of huff. This is saved in low to check for when a new sub-table should be started. drop is zero when the root table is being filled, and drop is root when sub-tables are being filled. When a new sub-table is needed, it is necessary to look ahead in the code lengths to determine what size sub-table is needed. The length counts are used for this, and so count[] is decremented as codes are entered in the tables. used keeps track of how many table entries have been allocated from the provided *table space. It is checked for LENS and DIST tables against the constants ENOUGH_LENS and ENOUGH_DISTS to guard against changes in the initial root table size constants. See the comments in inftrees.h for more information. sym increments through all symbols, and the loop terminates when all codes of length max, i.e. all codes, have been processed. This routine permits incomplete codes, so another loop after this one fills in the rest of the decoding tables with invalid code markers. */ /* set up for code type */ switch (type) { case CODES: base = extra = work; /* dummy value--not used */ end = 19; break; case LENS: base = lbase; base -= 257; extra = lext; extra -= 257; end = 256; break; default: /* DISTS */ base = dbase; extra = dext; end = -1; } /* initialize state for loop */ huff = 0; /* starting code */ sym = 0; /* starting code symbol */ len = min; /* starting code length */ next = *table; /* current table to fill in */ curr = root; /* current table index bits */ drop = 0; /* current bits to drop from code for index */ low = (unsigned)(-1); /* trigger new sub-table when len > root */ used = 1U << root; /* use root table entries */ mask = used - 1; /* mask for comparing low */ /* check available table space */ if ((type == LENS && used >= ENOUGH_LENS) || (type == DISTS && used >= ENOUGH_DISTS)) return 1; /* process all codes and make table entries */ for (;;) { /* create table entry */ here.bits = (unsigned char)(len - drop); if ((int)(work[sym]) < end) { here.op = (unsigned char)0; here.val = work[sym]; } else if ((int)(work[sym]) > end) { here.op = (unsigned char)(extra[work[sym]]); here.val = base[work[sym]]; } else { here.op = (unsigned char)(32 + 64); /* end of block */ here.val = 0; } /* replicate for those indices with low len bits equal to huff */ incr = 1U << (len - drop); fill = 1U << curr; min = fill; /* save offset to next table */ do { fill -= incr; next[(huff >> drop) + fill] = here; } while (fill != 0); /* backwards increment the len-bit code huff */ incr = 1U << (len - 1); while (huff & incr) incr >>= 1; if (incr != 0) { huff &= incr - 1; huff += incr; } else huff = 0; /* go to next symbol, update count, len */ sym++; if (--(count[len]) == 0) { if (len == max) break; len = lens[work[sym]]; } /* create new sub-table if needed */ if (len > root && (huff & mask) != low) { /* if first time, transition to sub-tables */ if (drop == 0) drop = root; /* increment past last table */ next += min; /* here min is 1 << curr */ /* determine length of next table */ curr = len - drop; left = (int)(1 << curr); while (curr + drop < max) { left -= count[curr + drop]; if (left <= 0) break; curr++; left <<= 1; } /* check for enough space */ used += 1U << curr; if ((type == LENS && used >= ENOUGH_LENS) || (type == DISTS && used >= ENOUGH_DISTS)) return 1; /* point entry in root table to sub-table */ low = huff & mask; (*table)[low].op = (unsigned char)curr; (*table)[low].bits = (unsigned char)root; (*table)[low].val = (unsigned short)(next - *table); } } /* Fill in rest of table for incomplete codes. This loop is similar to the loop above in incrementing huff for table indices. It is assumed that len is equal to curr + drop, so there is no loop needed to increment through high index bits. When the current sub-table is filled, the loop drops back to the root table to fill in any remaining entries there. */ here.op = (unsigned char)64; /* invalid code marker */ here.bits = (unsigned char)(len - drop); here.val = (unsigned short)0; while (huff != 0) { /* when done with sub-table, drop back to root table */ if (drop != 0 && (huff & mask) != low) { drop = 0; len = root; next = *table; here.bits = (unsigned char)len; } /* put invalid code marker in table */ next[huff >> drop] = here; /* backwards increment the len-bit code huff */ incr = 1U << (len - 1); while (huff & incr) incr >>= 1; if (incr != 0) { huff &= incr - 1; huff += incr; } else huff = 0; } /* set return parameters */ *table += used; *bits = root; return 0; } healpy-1.8.1/cfitsio/zlib/inflate.h0000654000175000017530000001437712272000775017624 0ustar zoncaplanck00000000000000/* inflate.h -- internal inflate state definition * Copyright (C) 1995-2009 Mark Adler * For conditions of distribution and use, see copyright notice in zlib.h */ /* WARNING: this file should *not* be used by applications. It is part of the implementation of the compression library and is subject to change. Applications should only use zlib.h. */ /* define NO_GZIP when compiling if you want to disable gzip header and trailer decoding by inflate(). NO_GZIP would be used to avoid linking in the crc code when it is not needed. For shared libraries, gzip decoding should be left enabled. */ #ifndef NO_GZIP # define GUNZIP #endif /* Possible inflate modes between inflate() calls */ typedef enum { HEAD, /* i: waiting for magic header */ FLAGS, /* i: waiting for method and flags (gzip) */ TIME, /* i: waiting for modification time (gzip) */ OS, /* i: waiting for extra flags and operating system (gzip) */ EXLEN, /* i: waiting for extra length (gzip) */ EXTRA, /* i: waiting for extra bytes (gzip) */ NAME, /* i: waiting for end of file name (gzip) */ COMMENT, /* i: waiting for end of comment (gzip) */ HCRC, /* i: waiting for header crc (gzip) */ DICTID, /* i: waiting for dictionary check value */ DICT, /* waiting for inflateSetDictionary() call */ TYPE, /* i: waiting for type bits, including last-flag bit */ TYPEDO, /* i: same, but skip check to exit inflate on new block */ STORED, /* i: waiting for stored size (length and complement) */ COPY_, /* i/o: same as COPY below, but only first time in */ COPY, /* i/o: waiting for input or output to copy stored block */ TABLE, /* i: waiting for dynamic block table lengths */ LENLENS, /* i: waiting for code length code lengths */ CODELENS, /* i: waiting for length/lit and distance code lengths */ LEN_, /* i: same as LEN below, but only first time in */ LEN, /* i: waiting for length/lit/eob code */ LENEXT, /* i: waiting for length extra bits */ DIST, /* i: waiting for distance code */ DISTEXT, /* i: waiting for distance extra bits */ MATCH, /* o: waiting for output space to copy string */ LIT, /* o: waiting for output space to write literal */ CHECK, /* i: waiting for 32-bit check value */ LENGTH, /* i: waiting for 32-bit length (gzip) */ DONE, /* finished check, done -- remain here until reset */ BAD, /* got a data error -- remain here until reset */ MEM, /* got an inflate() memory error -- remain here until reset */ SYNC /* looking for synchronization bytes to restart inflate() */ } inflate_mode; /* State transitions between above modes - (most modes can go to BAD or MEM on error -- not shown for clarity) Process header: HEAD -> (gzip) or (zlib) or (raw) (gzip) -> FLAGS -> TIME -> OS -> EXLEN -> EXTRA -> NAME -> COMMENT -> HCRC -> TYPE (zlib) -> DICTID or TYPE DICTID -> DICT -> TYPE (raw) -> TYPEDO Read deflate blocks: TYPE -> TYPEDO -> STORED or TABLE or LEN_ or CHECK STORED -> COPY_ -> COPY -> TYPE TABLE -> LENLENS -> CODELENS -> LEN_ LEN_ -> LEN Read deflate codes in fixed or dynamic block: LEN -> LENEXT or LIT or TYPE LENEXT -> DIST -> DISTEXT -> MATCH -> LEN LIT -> LEN Process trailer: CHECK -> LENGTH -> DONE */ /* state maintained between inflate() calls. Approximately 10K bytes. */ struct inflate_state { inflate_mode mode; /* current inflate mode */ int last; /* true if processing last block */ int wrap; /* bit 0 true for zlib, bit 1 true for gzip */ int havedict; /* true if dictionary provided */ int flags; /* gzip header method and flags (0 if zlib) */ unsigned dmax; /* zlib header max distance (INFLATE_STRICT) */ unsigned long check; /* protected copy of check value */ unsigned long total; /* protected copy of output count */ gz_headerp head; /* where to save gzip header information */ /* sliding window */ unsigned wbits; /* log base 2 of requested window size */ unsigned wsize; /* window size or zero if not using window */ unsigned whave; /* valid bytes in the window */ unsigned wnext; /* window write index */ unsigned char FAR *window; /* allocated sliding window, if needed */ /* bit accumulator */ unsigned long hold; /* input bit accumulator */ unsigned bits; /* number of bits in "in" */ /* for string and stored block copying */ unsigned length; /* literal or length of data to copy */ unsigned offset; /* distance back to copy string from */ /* for table and code decoding */ unsigned extra; /* extra bits needed */ /* fixed and dynamic code tables */ code const FAR *lencode; /* starting table for length/literal codes */ code const FAR *distcode; /* starting table for distance codes */ unsigned lenbits; /* index bits for lencode */ unsigned distbits; /* index bits for distcode */ /* dynamic table building */ unsigned ncode; /* number of code length code lengths */ unsigned nlen; /* number of length code lengths */ unsigned ndist; /* number of distance code lengths */ unsigned have; /* number of code lengths in lens[] */ code FAR *next; /* next available space in codes[] */ unsigned short lens[320]; /* temporary storage for code lengths */ unsigned short work[288]; /* work area for code table building */ code codes[ENOUGH]; /* space for code tables */ int sane; /* if false, allow invalid distance too far */ int back; /* bits back of last unprocessed length/lit */ unsigned was; /* initial length of match */ }; healpy-1.8.1/cfitsio/zlib/inffixed.h0000654000175000017530000001430712272000775017767 0ustar zoncaplanck00000000000000 /* inffixed.h -- table for decoding fixed codes * Generated automatically by makefixed(). */ /* WARNING: this file should *not* be used by applications. It is part of the implementation of the compression library and is subject to change. Applications should only use zlib.h. */ static const code lenfix[512] = { {96,7,0},{0,8,80},{0,8,16},{20,8,115},{18,7,31},{0,8,112},{0,8,48}, {0,9,192},{16,7,10},{0,8,96},{0,8,32},{0,9,160},{0,8,0},{0,8,128}, {0,8,64},{0,9,224},{16,7,6},{0,8,88},{0,8,24},{0,9,144},{19,7,59}, {0,8,120},{0,8,56},{0,9,208},{17,7,17},{0,8,104},{0,8,40},{0,9,176}, {0,8,8},{0,8,136},{0,8,72},{0,9,240},{16,7,4},{0,8,84},{0,8,20}, {21,8,227},{19,7,43},{0,8,116},{0,8,52},{0,9,200},{17,7,13},{0,8,100}, {0,8,36},{0,9,168},{0,8,4},{0,8,132},{0,8,68},{0,9,232},{16,7,8}, {0,8,92},{0,8,28},{0,9,152},{20,7,83},{0,8,124},{0,8,60},{0,9,216}, {18,7,23},{0,8,108},{0,8,44},{0,9,184},{0,8,12},{0,8,140},{0,8,76}, {0,9,248},{16,7,3},{0,8,82},{0,8,18},{21,8,163},{19,7,35},{0,8,114}, {0,8,50},{0,9,196},{17,7,11},{0,8,98},{0,8,34},{0,9,164},{0,8,2}, {0,8,130},{0,8,66},{0,9,228},{16,7,7},{0,8,90},{0,8,26},{0,9,148}, {20,7,67},{0,8,122},{0,8,58},{0,9,212},{18,7,19},{0,8,106},{0,8,42}, {0,9,180},{0,8,10},{0,8,138},{0,8,74},{0,9,244},{16,7,5},{0,8,86}, {0,8,22},{64,8,0},{19,7,51},{0,8,118},{0,8,54},{0,9,204},{17,7,15}, {0,8,102},{0,8,38},{0,9,172},{0,8,6},{0,8,134},{0,8,70},{0,9,236}, {16,7,9},{0,8,94},{0,8,30},{0,9,156},{20,7,99},{0,8,126},{0,8,62}, {0,9,220},{18,7,27},{0,8,110},{0,8,46},{0,9,188},{0,8,14},{0,8,142}, {0,8,78},{0,9,252},{96,7,0},{0,8,81},{0,8,17},{21,8,131},{18,7,31}, {0,8,113},{0,8,49},{0,9,194},{16,7,10},{0,8,97},{0,8,33},{0,9,162}, {0,8,1},{0,8,129},{0,8,65},{0,9,226},{16,7,6},{0,8,89},{0,8,25}, {0,9,146},{19,7,59},{0,8,121},{0,8,57},{0,9,210},{17,7,17},{0,8,105}, {0,8,41},{0,9,178},{0,8,9},{0,8,137},{0,8,73},{0,9,242},{16,7,4}, {0,8,85},{0,8,21},{16,8,258},{19,7,43},{0,8,117},{0,8,53},{0,9,202}, {17,7,13},{0,8,101},{0,8,37},{0,9,170},{0,8,5},{0,8,133},{0,8,69}, {0,9,234},{16,7,8},{0,8,93},{0,8,29},{0,9,154},{20,7,83},{0,8,125}, {0,8,61},{0,9,218},{18,7,23},{0,8,109},{0,8,45},{0,9,186},{0,8,13}, {0,8,141},{0,8,77},{0,9,250},{16,7,3},{0,8,83},{0,8,19},{21,8,195}, {19,7,35},{0,8,115},{0,8,51},{0,9,198},{17,7,11},{0,8,99},{0,8,35}, {0,9,166},{0,8,3},{0,8,131},{0,8,67},{0,9,230},{16,7,7},{0,8,91}, {0,8,27},{0,9,150},{20,7,67},{0,8,123},{0,8,59},{0,9,214},{18,7,19}, {0,8,107},{0,8,43},{0,9,182},{0,8,11},{0,8,139},{0,8,75},{0,9,246}, {16,7,5},{0,8,87},{0,8,23},{64,8,0},{19,7,51},{0,8,119},{0,8,55}, {0,9,206},{17,7,15},{0,8,103},{0,8,39},{0,9,174},{0,8,7},{0,8,135}, {0,8,71},{0,9,238},{16,7,9},{0,8,95},{0,8,31},{0,9,158},{20,7,99}, {0,8,127},{0,8,63},{0,9,222},{18,7,27},{0,8,111},{0,8,47},{0,9,190}, {0,8,15},{0,8,143},{0,8,79},{0,9,254},{96,7,0},{0,8,80},{0,8,16}, {20,8,115},{18,7,31},{0,8,112},{0,8,48},{0,9,193},{16,7,10},{0,8,96}, {0,8,32},{0,9,161},{0,8,0},{0,8,128},{0,8,64},{0,9,225},{16,7,6}, {0,8,88},{0,8,24},{0,9,145},{19,7,59},{0,8,120},{0,8,56},{0,9,209}, {17,7,17},{0,8,104},{0,8,40},{0,9,177},{0,8,8},{0,8,136},{0,8,72}, {0,9,241},{16,7,4},{0,8,84},{0,8,20},{21,8,227},{19,7,43},{0,8,116}, {0,8,52},{0,9,201},{17,7,13},{0,8,100},{0,8,36},{0,9,169},{0,8,4}, {0,8,132},{0,8,68},{0,9,233},{16,7,8},{0,8,92},{0,8,28},{0,9,153}, {20,7,83},{0,8,124},{0,8,60},{0,9,217},{18,7,23},{0,8,108},{0,8,44}, {0,9,185},{0,8,12},{0,8,140},{0,8,76},{0,9,249},{16,7,3},{0,8,82}, {0,8,18},{21,8,163},{19,7,35},{0,8,114},{0,8,50},{0,9,197},{17,7,11}, {0,8,98},{0,8,34},{0,9,165},{0,8,2},{0,8,130},{0,8,66},{0,9,229}, {16,7,7},{0,8,90},{0,8,26},{0,9,149},{20,7,67},{0,8,122},{0,8,58}, {0,9,213},{18,7,19},{0,8,106},{0,8,42},{0,9,181},{0,8,10},{0,8,138}, {0,8,74},{0,9,245},{16,7,5},{0,8,86},{0,8,22},{64,8,0},{19,7,51}, {0,8,118},{0,8,54},{0,9,205},{17,7,15},{0,8,102},{0,8,38},{0,9,173}, {0,8,6},{0,8,134},{0,8,70},{0,9,237},{16,7,9},{0,8,94},{0,8,30}, {0,9,157},{20,7,99},{0,8,126},{0,8,62},{0,9,221},{18,7,27},{0,8,110}, {0,8,46},{0,9,189},{0,8,14},{0,8,142},{0,8,78},{0,9,253},{96,7,0}, {0,8,81},{0,8,17},{21,8,131},{18,7,31},{0,8,113},{0,8,49},{0,9,195}, {16,7,10},{0,8,97},{0,8,33},{0,9,163},{0,8,1},{0,8,129},{0,8,65}, {0,9,227},{16,7,6},{0,8,89},{0,8,25},{0,9,147},{19,7,59},{0,8,121}, {0,8,57},{0,9,211},{17,7,17},{0,8,105},{0,8,41},{0,9,179},{0,8,9}, {0,8,137},{0,8,73},{0,9,243},{16,7,4},{0,8,85},{0,8,21},{16,8,258}, {19,7,43},{0,8,117},{0,8,53},{0,9,203},{17,7,13},{0,8,101},{0,8,37}, {0,9,171},{0,8,5},{0,8,133},{0,8,69},{0,9,235},{16,7,8},{0,8,93}, {0,8,29},{0,9,155},{20,7,83},{0,8,125},{0,8,61},{0,9,219},{18,7,23}, {0,8,109},{0,8,45},{0,9,187},{0,8,13},{0,8,141},{0,8,77},{0,9,251}, {16,7,3},{0,8,83},{0,8,19},{21,8,195},{19,7,35},{0,8,115},{0,8,51}, {0,9,199},{17,7,11},{0,8,99},{0,8,35},{0,9,167},{0,8,3},{0,8,131}, {0,8,67},{0,9,231},{16,7,7},{0,8,91},{0,8,27},{0,9,151},{20,7,67}, {0,8,123},{0,8,59},{0,9,215},{18,7,19},{0,8,107},{0,8,43},{0,9,183}, {0,8,11},{0,8,139},{0,8,75},{0,9,247},{16,7,5},{0,8,87},{0,8,23}, {64,8,0},{19,7,51},{0,8,119},{0,8,55},{0,9,207},{17,7,15},{0,8,103}, {0,8,39},{0,9,175},{0,8,7},{0,8,135},{0,8,71},{0,9,239},{16,7,9}, {0,8,95},{0,8,31},{0,9,159},{20,7,99},{0,8,127},{0,8,63},{0,9,223}, {18,7,27},{0,8,111},{0,8,47},{0,9,191},{0,8,15},{0,8,143},{0,8,79}, {0,9,255} }; static const code distfix[32] = { {16,5,1},{23,5,257},{19,5,17},{27,5,4097},{17,5,5},{25,5,1025}, {21,5,65},{29,5,16385},{16,5,3},{24,5,513},{20,5,33},{28,5,8193}, {18,5,9},{26,5,2049},{22,5,129},{64,5,0},{16,5,2},{23,5,385}, {19,5,25},{27,5,6145},{17,5,7},{25,5,1537},{21,5,97},{29,5,24577}, {16,5,4},{24,5,769},{20,5,49},{28,5,12289},{18,5,13},{26,5,3073}, {22,5,193},{64,5,0} }; healpy-1.8.1/cfitsio/zlib/crc32.h0000654000175000017530000007355012272000775017114 0ustar zoncaplanck00000000000000/* crc32.h -- tables for rapid CRC calculation * Generated automatically by crc32.c */ local const unsigned long FAR crc_table[TBLS][256] = { { 0x00000000UL, 0x77073096UL, 0xee0e612cUL, 0x990951baUL, 0x076dc419UL, 0x706af48fUL, 0xe963a535UL, 0x9e6495a3UL, 0x0edb8832UL, 0x79dcb8a4UL, 0xe0d5e91eUL, 0x97d2d988UL, 0x09b64c2bUL, 0x7eb17cbdUL, 0xe7b82d07UL, 0x90bf1d91UL, 0x1db71064UL, 0x6ab020f2UL, 0xf3b97148UL, 0x84be41deUL, 0x1adad47dUL, 0x6ddde4ebUL, 0xf4d4b551UL, 0x83d385c7UL, 0x136c9856UL, 0x646ba8c0UL, 0xfd62f97aUL, 0x8a65c9ecUL, 0x14015c4fUL, 0x63066cd9UL, 0xfa0f3d63UL, 0x8d080df5UL, 0x3b6e20c8UL, 0x4c69105eUL, 0xd56041e4UL, 0xa2677172UL, 0x3c03e4d1UL, 0x4b04d447UL, 0xd20d85fdUL, 0xa50ab56bUL, 0x35b5a8faUL, 0x42b2986cUL, 0xdbbbc9d6UL, 0xacbcf940UL, 0x32d86ce3UL, 0x45df5c75UL, 0xdcd60dcfUL, 0xabd13d59UL, 0x26d930acUL, 0x51de003aUL, 0xc8d75180UL, 0xbfd06116UL, 0x21b4f4b5UL, 0x56b3c423UL, 0xcfba9599UL, 0xb8bda50fUL, 0x2802b89eUL, 0x5f058808UL, 0xc60cd9b2UL, 0xb10be924UL, 0x2f6f7c87UL, 0x58684c11UL, 0xc1611dabUL, 0xb6662d3dUL, 0x76dc4190UL, 0x01db7106UL, 0x98d220bcUL, 0xefd5102aUL, 0x71b18589UL, 0x06b6b51fUL, 0x9fbfe4a5UL, 0xe8b8d433UL, 0x7807c9a2UL, 0x0f00f934UL, 0x9609a88eUL, 0xe10e9818UL, 0x7f6a0dbbUL, 0x086d3d2dUL, 0x91646c97UL, 0xe6635c01UL, 0x6b6b51f4UL, 0x1c6c6162UL, 0x856530d8UL, 0xf262004eUL, 0x6c0695edUL, 0x1b01a57bUL, 0x8208f4c1UL, 0xf50fc457UL, 0x65b0d9c6UL, 0x12b7e950UL, 0x8bbeb8eaUL, 0xfcb9887cUL, 0x62dd1ddfUL, 0x15da2d49UL, 0x8cd37cf3UL, 0xfbd44c65UL, 0x4db26158UL, 0x3ab551ceUL, 0xa3bc0074UL, 0xd4bb30e2UL, 0x4adfa541UL, 0x3dd895d7UL, 0xa4d1c46dUL, 0xd3d6f4fbUL, 0x4369e96aUL, 0x346ed9fcUL, 0xad678846UL, 0xda60b8d0UL, 0x44042d73UL, 0x33031de5UL, 0xaa0a4c5fUL, 0xdd0d7cc9UL, 0x5005713cUL, 0x270241aaUL, 0xbe0b1010UL, 0xc90c2086UL, 0x5768b525UL, 0x206f85b3UL, 0xb966d409UL, 0xce61e49fUL, 0x5edef90eUL, 0x29d9c998UL, 0xb0d09822UL, 0xc7d7a8b4UL, 0x59b33d17UL, 0x2eb40d81UL, 0xb7bd5c3bUL, 0xc0ba6cadUL, 0xedb88320UL, 0x9abfb3b6UL, 0x03b6e20cUL, 0x74b1d29aUL, 0xead54739UL, 0x9dd277afUL, 0x04db2615UL, 0x73dc1683UL, 0xe3630b12UL, 0x94643b84UL, 0x0d6d6a3eUL, 0x7a6a5aa8UL, 0xe40ecf0bUL, 0x9309ff9dUL, 0x0a00ae27UL, 0x7d079eb1UL, 0xf00f9344UL, 0x8708a3d2UL, 0x1e01f268UL, 0x6906c2feUL, 0xf762575dUL, 0x806567cbUL, 0x196c3671UL, 0x6e6b06e7UL, 0xfed41b76UL, 0x89d32be0UL, 0x10da7a5aUL, 0x67dd4accUL, 0xf9b9df6fUL, 0x8ebeeff9UL, 0x17b7be43UL, 0x60b08ed5UL, 0xd6d6a3e8UL, 0xa1d1937eUL, 0x38d8c2c4UL, 0x4fdff252UL, 0xd1bb67f1UL, 0xa6bc5767UL, 0x3fb506ddUL, 0x48b2364bUL, 0xd80d2bdaUL, 0xaf0a1b4cUL, 0x36034af6UL, 0x41047a60UL, 0xdf60efc3UL, 0xa867df55UL, 0x316e8eefUL, 0x4669be79UL, 0xcb61b38cUL, 0xbc66831aUL, 0x256fd2a0UL, 0x5268e236UL, 0xcc0c7795UL, 0xbb0b4703UL, 0x220216b9UL, 0x5505262fUL, 0xc5ba3bbeUL, 0xb2bd0b28UL, 0x2bb45a92UL, 0x5cb36a04UL, 0xc2d7ffa7UL, 0xb5d0cf31UL, 0x2cd99e8bUL, 0x5bdeae1dUL, 0x9b64c2b0UL, 0xec63f226UL, 0x756aa39cUL, 0x026d930aUL, 0x9c0906a9UL, 0xeb0e363fUL, 0x72076785UL, 0x05005713UL, 0x95bf4a82UL, 0xe2b87a14UL, 0x7bb12baeUL, 0x0cb61b38UL, 0x92d28e9bUL, 0xe5d5be0dUL, 0x7cdcefb7UL, 0x0bdbdf21UL, 0x86d3d2d4UL, 0xf1d4e242UL, 0x68ddb3f8UL, 0x1fda836eUL, 0x81be16cdUL, 0xf6b9265bUL, 0x6fb077e1UL, 0x18b74777UL, 0x88085ae6UL, 0xff0f6a70UL, 0x66063bcaUL, 0x11010b5cUL, 0x8f659effUL, 0xf862ae69UL, 0x616bffd3UL, 0x166ccf45UL, 0xa00ae278UL, 0xd70dd2eeUL, 0x4e048354UL, 0x3903b3c2UL, 0xa7672661UL, 0xd06016f7UL, 0x4969474dUL, 0x3e6e77dbUL, 0xaed16a4aUL, 0xd9d65adcUL, 0x40df0b66UL, 0x37d83bf0UL, 0xa9bcae53UL, 0xdebb9ec5UL, 0x47b2cf7fUL, 0x30b5ffe9UL, 0xbdbdf21cUL, 0xcabac28aUL, 0x53b39330UL, 0x24b4a3a6UL, 0xbad03605UL, 0xcdd70693UL, 0x54de5729UL, 0x23d967bfUL, 0xb3667a2eUL, 0xc4614ab8UL, 0x5d681b02UL, 0x2a6f2b94UL, 0xb40bbe37UL, 0xc30c8ea1UL, 0x5a05df1bUL, 0x2d02ef8dUL #ifdef BYFOUR }, { 0x00000000UL, 0x191b3141UL, 0x32366282UL, 0x2b2d53c3UL, 0x646cc504UL, 0x7d77f445UL, 0x565aa786UL, 0x4f4196c7UL, 0xc8d98a08UL, 0xd1c2bb49UL, 0xfaefe88aUL, 0xe3f4d9cbUL, 0xacb54f0cUL, 0xb5ae7e4dUL, 0x9e832d8eUL, 0x87981ccfUL, 0x4ac21251UL, 0x53d92310UL, 0x78f470d3UL, 0x61ef4192UL, 0x2eaed755UL, 0x37b5e614UL, 0x1c98b5d7UL, 0x05838496UL, 0x821b9859UL, 0x9b00a918UL, 0xb02dfadbUL, 0xa936cb9aUL, 0xe6775d5dUL, 0xff6c6c1cUL, 0xd4413fdfUL, 0xcd5a0e9eUL, 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0xe9c6f9b3UL, 0x8ca1450bUL, 0x620ef019UL, 0x07694ca1UL, 0xbe519b3cUL, 0xdb362784UL, 0x35999296UL, 0x50fe2e2eUL, 0x99b95426UL, 0xfcdee89eUL, 0x12715d8cUL, 0x7716e134UL, 0xce2e36a9UL, 0xab498a11UL, 0x45e63f03UL, 0x208183bbUL, 0x7691e0e3UL, 0x13f65c5bUL, 0xfd59e949UL, 0x983e55f1UL, 0x2106826cUL, 0x44613ed4UL, 0xaace8bc6UL, 0xcfa9377eUL, 0x38417fd6UL, 0x5d26c36eUL, 0xb389767cUL, 0xd6eecac4UL, 0x6fd61d59UL, 0x0ab1a1e1UL, 0xe41e14f3UL, 0x8179a84bUL, 0xd769cb13UL, 0xb20e77abUL, 0x5ca1c2b9UL, 0x39c67e01UL, 0x80fea99cUL, 0xe5991524UL, 0x0b36a036UL, 0x6e511c8eUL, 0xa7166686UL, 0xc271da3eUL, 0x2cde6f2cUL, 0x49b9d394UL, 0xf0810409UL, 0x95e6b8b1UL, 0x7b490da3UL, 0x1e2eb11bUL, 0x483ed243UL, 0x2d596efbUL, 0xc3f6dbe9UL, 0xa6916751UL, 0x1fa9b0ccUL, 0x7ace0c74UL, 0x9461b966UL, 0xf10605deUL #endif } }; healpy-1.8.1/cfitsio/zlib/zutil.h0000654000175000017530000001574012272000775017344 0ustar zoncaplanck00000000000000/* zutil.h -- internal interface and configuration of the compression library * Copyright (C) 1995-2010 Jean-loup Gailly. * For conditions of distribution and use, see copyright notice in zlib.h */ /* WARNING: this file should *not* be used by applications. It is part of the implementation of the compression library and is subject to change. Applications should only use zlib.h. */ #ifndef ZUTIL_H #define ZUTIL_H #if ((__GNUC__-0) * 10 + __GNUC_MINOR__-0 >= 33) && !defined(NO_VIZ) # define ZLIB_INTERNAL __attribute__((visibility ("hidden"))) #else # define ZLIB_INTERNAL #endif #include "zlib.h" #ifdef STDC # if !(defined(_WIN32_WCE) && defined(_MSC_VER)) # include # endif # include # include #endif #ifndef local # define local static #endif /* compile with -Dlocal if your debugger can't find static symbols */ typedef unsigned char uch; typedef uch FAR uchf; typedef unsigned short ush; typedef ush FAR ushf; typedef unsigned long ulg; extern const char * const z_errmsg[10]; /* indexed by 2-zlib_error */ /* (size given to avoid silly warnings with Visual C++) */ #define ERR_MSG(err) z_errmsg[Z_NEED_DICT-(err)] #define ERR_RETURN(strm,err) \ return (strm->msg = (char*)ERR_MSG(err), (err)) /* To be used only when the state is known to be valid */ /* common constants */ #ifndef DEF_WBITS # define DEF_WBITS MAX_WBITS #endif /* default windowBits for decompression. MAX_WBITS is for compression only */ #if MAX_MEM_LEVEL >= 8 # define DEF_MEM_LEVEL 8 #else # define DEF_MEM_LEVEL MAX_MEM_LEVEL #endif /* default memLevel */ #define STORED_BLOCK 0 #define STATIC_TREES 1 #define DYN_TREES 2 /* The three kinds of block type */ #define MIN_MATCH 3 #define MAX_MATCH 258 /* The minimum and maximum match lengths */ #define PRESET_DICT 0x20 /* preset dictionary flag in zlib header */ /* target dependencies */ #if defined(MSDOS) || (defined(WINDOWS) && !defined(WIN32)) # define OS_CODE 0x00 # if defined(__TURBOC__) || defined(__BORLANDC__) # if (__STDC__ == 1) && (defined(__LARGE__) || defined(__COMPACT__)) /* Allow compilation with ANSI keywords only enabled */ void _Cdecl farfree( void *block ); void *_Cdecl farmalloc( unsigned long nbytes ); # else # include # endif # else /* MSC or DJGPP */ # include # endif #endif #ifdef AMIGA # define OS_CODE 0x01 #endif #if defined(VAXC) || defined(VMS) # define OS_CODE 0x02 # define F_OPEN(name, mode) \ fopen((name), (mode), "mbc=60", "ctx=stm", "rfm=fix", "mrs=512") #endif #if defined(ATARI) || defined(atarist) # define OS_CODE 0x05 #endif #ifdef OS2 # define OS_CODE 0x06 # ifdef M_I86 # include # endif #endif #if defined(MACOS) || defined(TARGET_OS_MAC) # define OS_CODE 0x07 # if defined(__MWERKS__) && __dest_os != __be_os && __dest_os != __win32_os # include /* for fdopen */ # else # ifndef fdopen # define fdopen(fd,mode) NULL /* No fdopen() */ # endif # endif #endif #ifdef TOPS20 # define OS_CODE 0x0a #endif #ifdef WIN32 # ifndef __CYGWIN__ /* Cygwin is Unix, not Win32 */ # define OS_CODE 0x0b # endif #endif #ifdef __50SERIES /* Prime/PRIMOS */ # define OS_CODE 0x0f #endif #if defined(_BEOS_) || defined(RISCOS) # define fdopen(fd,mode) NULL /* No fdopen() */ #endif #if (defined(_MSC_VER) && (_MSC_VER > 600)) && !defined __INTERIX # if defined(_WIN32_WCE) # define fdopen(fd,mode) NULL /* No fdopen() */ # ifndef _PTRDIFF_T_DEFINED typedef int ptrdiff_t; # define _PTRDIFF_T_DEFINED # endif # else # define fdopen(fd,type) _fdopen(fd,type) # endif #endif #if defined(__BORLANDC__) #pragma warn -8004 #pragma warn -8008 #pragma warn -8066 #endif /* provide prototypes for these when building zlib without LFS */ #if !defined(_LARGEFILE64_SOURCE) || _LFS64_LARGEFILE-0 == 0 ZEXTERN uLong ZEXPORT adler32_combine64 OF((uLong, uLong, z_off_t)); ZEXTERN uLong ZEXPORT crc32_combine64 OF((uLong, uLong, z_off_t)); #endif /* common defaults */ #ifndef OS_CODE # define OS_CODE 0x03 /* assume Unix */ #endif #ifndef F_OPEN # define F_OPEN(name, mode) fopen((name), (mode)) #endif /* functions */ #if defined(STDC99) || (defined(__TURBOC__) && __TURBOC__ >= 0x550) # ifndef HAVE_VSNPRINTF # define HAVE_VSNPRINTF # endif #endif #if defined(__CYGWIN__) # ifndef HAVE_VSNPRINTF # define HAVE_VSNPRINTF # endif #endif #ifndef HAVE_VSNPRINTF # ifdef MSDOS /* vsnprintf may exist on some MS-DOS compilers (DJGPP?), but for now we just assume it doesn't. */ # define NO_vsnprintf # endif # ifdef __TURBOC__ # define NO_vsnprintf # endif # ifdef WIN32 /* In Win32, vsnprintf is available as the "non-ANSI" _vsnprintf. */ # if !defined(vsnprintf) && !defined(NO_vsnprintf) # if !defined(_MSC_VER) || ( defined(_MSC_VER) && _MSC_VER < 1500 ) # define vsnprintf _vsnprintf # endif # endif # endif # ifdef __SASC # define NO_vsnprintf # endif #endif #ifdef VMS # define NO_vsnprintf #endif #if defined(pyr) # define NO_MEMCPY #endif #if defined(SMALL_MEDIUM) && !defined(_MSC_VER) && !defined(__SC__) /* Use our own functions for small and medium model with MSC <= 5.0. * You may have to use the same strategy for Borland C (untested). * The __SC__ check is for Symantec. */ # define NO_MEMCPY #endif #if defined(STDC) && !defined(HAVE_MEMCPY) && !defined(NO_MEMCPY) # define HAVE_MEMCPY #endif #ifdef HAVE_MEMCPY # ifdef SMALL_MEDIUM /* MSDOS small or medium model */ # define zmemcpy _fmemcpy # define zmemcmp _fmemcmp # define zmemzero(dest, len) _fmemset(dest, 0, len) # else # define zmemcpy memcpy # define zmemcmp memcmp # define zmemzero(dest, len) memset(dest, 0, len) # endif #else void ZLIB_INTERNAL zmemcpy OF((Bytef* dest, const Bytef* source, uInt len)); int ZLIB_INTERNAL zmemcmp OF((const Bytef* s1, const Bytef* s2, uInt len)); void ZLIB_INTERNAL zmemzero OF((Bytef* dest, uInt len)); #endif /* Diagnostic functions */ #ifdef DEBUG # include extern int ZLIB_INTERNAL z_verbose; extern void ZLIB_INTERNAL z_error OF((char *m)); # define Assert(cond,msg) {if(!(cond)) z_error(msg);} # define Trace(x) {if (z_verbose>=0) fprintf x ;} # define Tracev(x) {if (z_verbose>0) fprintf x ;} # define Tracevv(x) {if (z_verbose>1) fprintf x ;} # define Tracec(c,x) {if (z_verbose>0 && (c)) fprintf x ;} # define Tracecv(c,x) {if (z_verbose>1 && (c)) fprintf x ;} #else # define Assert(cond,msg) # define Trace(x) # define Tracev(x) # define Tracevv(x) # define Tracec(c,x) # define Tracecv(c,x) #endif voidpf ZLIB_INTERNAL zcalloc OF((voidpf opaque, unsigned items, unsigned size)); void ZLIB_INTERNAL zcfree OF((voidpf opaque, voidpf ptr)); #define ZALLOC(strm, items, size) \ (*((strm)->zalloc))((strm)->opaque, (items), (size)) #define ZFREE(strm, addr) (*((strm)->zfree))((strm)->opaque, (voidpf)(addr)) #define TRY_FREE(s, p) {if (p) ZFREE(s, p);} #endif /* ZUTIL_H */ healpy-1.8.1/cfitsio/zlib/inffast.c0000654000175000017530000003217712272000775017625 0ustar zoncaplanck00000000000000/* inffast.c -- fast decoding * Copyright (C) 1995-2008, 2010 Mark Adler * For conditions of distribution and use, see copyright notice in zlib.h */ #include "zutil.h" #include "inftrees.h" #include "inflate.h" #include "inffast.h" #ifndef ASMINF /* Allow machine dependent optimization for post-increment or pre-increment. Based on testing to date, Pre-increment preferred for: - PowerPC G3 (Adler) - MIPS R5000 (Randers-Pehrson) Post-increment preferred for: - none No measurable difference: - Pentium III (Anderson) - M68060 (Nikl) */ #ifdef POSTINC # define OFF 0 # define PUP(a) *(a)++ #else # define OFF 1 # define PUP(a) *++(a) #endif /* Decode literal, length, and distance codes and write out the resulting literal and match bytes until either not enough input or output is available, an end-of-block is encountered, or a data error is encountered. When large enough input and output buffers are supplied to inflate(), for example, a 16K input buffer and a 64K output buffer, more than 95% of the inflate execution time is spent in this routine. Entry assumptions: state->mode == LEN strm->avail_in >= 6 strm->avail_out >= 258 start >= strm->avail_out state->bits < 8 On return, state->mode is one of: LEN -- ran out of enough output space or enough available input TYPE -- reached end of block code, inflate() to interpret next block BAD -- error in block data Notes: - The maximum input bits used by a length/distance pair is 15 bits for the length code, 5 bits for the length extra, 15 bits for the distance code, and 13 bits for the distance extra. This totals 48 bits, or six bytes. Therefore if strm->avail_in >= 6, then there is enough input to avoid checking for available input while decoding. - The maximum bytes that a single length/distance pair can output is 258 bytes, which is the maximum length that can be coded. inflate_fast() requires strm->avail_out >= 258 for each loop to avoid checking for output space. */ void ZLIB_INTERNAL inflate_fast(strm, start) z_streamp strm; unsigned start; /* inflate()'s starting value for strm->avail_out */ { struct inflate_state FAR *state; unsigned char FAR *in; /* local strm->next_in */ unsigned char FAR *last; /* while in < last, enough input available */ unsigned char FAR *out; /* local strm->next_out */ unsigned char FAR *beg; /* inflate()'s initial strm->next_out */ unsigned char FAR *end; /* while out < end, enough space available */ #ifdef INFLATE_STRICT unsigned dmax; /* maximum distance from zlib header */ #endif unsigned wsize; /* window size or zero if not using window */ unsigned whave; /* valid bytes in the window */ unsigned wnext; /* window write index */ unsigned char FAR *window; /* allocated sliding window, if wsize != 0 */ unsigned long hold; /* local strm->hold */ unsigned bits; /* local strm->bits */ code const FAR *lcode; /* local strm->lencode */ code const FAR *dcode; /* local strm->distcode */ unsigned lmask; /* mask for first level of length codes */ unsigned dmask; /* mask for first level of distance codes */ code here; /* retrieved table entry */ unsigned op; /* code bits, operation, extra bits, or */ /* window position, window bytes to copy */ unsigned len; /* match length, unused bytes */ unsigned dist; /* match distance */ unsigned char FAR *from; /* where to copy match from */ /* copy state to local variables */ state = (struct inflate_state FAR *)strm->state; in = strm->next_in - OFF; last = in + (strm->avail_in - 5); out = strm->next_out - OFF; beg = out - (start - strm->avail_out); end = out + (strm->avail_out - 257); #ifdef INFLATE_STRICT dmax = state->dmax; #endif wsize = state->wsize; whave = state->whave; wnext = state->wnext; window = state->window; hold = state->hold; bits = state->bits; lcode = state->lencode; dcode = state->distcode; lmask = (1U << state->lenbits) - 1; dmask = (1U << state->distbits) - 1; /* decode literals and length/distances until end-of-block or not enough input data or output space */ do { if (bits < 15) { hold += (unsigned long)(PUP(in)) << bits; bits += 8; hold += (unsigned long)(PUP(in)) << bits; bits += 8; } here = lcode[hold & lmask]; dolen: op = (unsigned)(here.bits); hold >>= op; bits -= op; op = (unsigned)(here.op); if (op == 0) { /* literal */ Tracevv((stderr, here.val >= 0x20 && here.val < 0x7f ? "inflate: literal '%c'\n" : "inflate: literal 0x%02x\n", here.val)); PUP(out) = (unsigned char)(here.val); } else if (op & 16) { /* length base */ len = (unsigned)(here.val); op &= 15; /* number of extra bits */ if (op) { if (bits < op) { hold += (unsigned long)(PUP(in)) << bits; bits += 8; } len += (unsigned)hold & ((1U << op) - 1); hold >>= op; bits -= op; } Tracevv((stderr, "inflate: length %u\n", len)); if (bits < 15) { hold += (unsigned long)(PUP(in)) << bits; bits += 8; hold += (unsigned long)(PUP(in)) << bits; bits += 8; } here = dcode[hold & dmask]; dodist: op = (unsigned)(here.bits); hold >>= op; bits -= op; op = (unsigned)(here.op); if (op & 16) { /* distance base */ dist = (unsigned)(here.val); op &= 15; /* number of extra bits */ if (bits < op) { hold += (unsigned long)(PUP(in)) << bits; bits += 8; if (bits < op) { hold += (unsigned long)(PUP(in)) << bits; bits += 8; } } dist += (unsigned)hold & ((1U << op) - 1); #ifdef INFLATE_STRICT if (dist > dmax) { strm->msg = (char *)"invalid distance too far back"; state->mode = BAD; break; } #endif hold >>= op; bits -= op; Tracevv((stderr, "inflate: distance %u\n", dist)); op = (unsigned)(out - beg); /* max distance in output */ if (dist > op) { /* see if copy from window */ op = dist - op; /* distance back in window */ if (op > whave) { if (state->sane) { strm->msg = (char *)"invalid distance too far back"; state->mode = BAD; break; } #ifdef INFLATE_ALLOW_INVALID_DISTANCE_TOOFAR_ARRR if (len <= op - whave) { do { PUP(out) = 0; } while (--len); continue; } len -= op - whave; do { PUP(out) = 0; } while (--op > whave); if (op == 0) { from = out - dist; do { PUP(out) = PUP(from); } while (--len); continue; } #endif } from = window - OFF; if (wnext == 0) { /* very common case */ from += wsize - op; if (op < len) { /* some from window */ len -= op; do { PUP(out) = PUP(from); } while (--op); from = out - dist; /* rest from output */ } } else if (wnext < op) { /* wrap around window */ from += wsize + wnext - op; op -= wnext; if (op < len) { /* some from end of window */ len -= op; do { PUP(out) = PUP(from); } while (--op); from = window - OFF; if (wnext < len) { /* some from start of window */ op = wnext; len -= op; do { PUP(out) = PUP(from); } while (--op); from = out - dist; /* rest from output */ } } } else { /* contiguous in window */ from += wnext - op; if (op < len) { /* some from window */ len -= op; do { PUP(out) = PUP(from); } while (--op); from = out - dist; /* rest from output */ } } while (len > 2) { PUP(out) = PUP(from); PUP(out) = PUP(from); PUP(out) = PUP(from); len -= 3; } if (len) { PUP(out) = PUP(from); if (len > 1) PUP(out) = PUP(from); } } else { from = out - dist; /* copy direct from output */ do { /* minimum length is three */ PUP(out) = PUP(from); PUP(out) = PUP(from); PUP(out) = PUP(from); len -= 3; } while (len > 2); if (len) { PUP(out) = PUP(from); if (len > 1) PUP(out) = PUP(from); } } } else if ((op & 64) == 0) { /* 2nd level distance code */ here = dcode[here.val + (hold & ((1U << op) - 1))]; goto dodist; } else { strm->msg = (char *)"invalid distance code"; state->mode = BAD; break; } } else if ((op & 64) == 0) { /* 2nd level length code */ here = lcode[here.val + (hold & ((1U << op) - 1))]; goto dolen; } else if (op & 32) { /* end-of-block */ Tracevv((stderr, "inflate: end of block\n")); state->mode = TYPE; break; } else { strm->msg = (char *)"invalid literal/length code"; state->mode = BAD; break; } } while (in < last && out < end); /* return unused bytes (on entry, bits < 8, so in won't go too far back) */ len = bits >> 3; in -= len; bits -= len << 3; hold &= (1U << bits) - 1; /* update state and return */ strm->next_in = in + OFF; strm->next_out = out + OFF; strm->avail_in = (unsigned)(in < last ? 5 + (last - in) : 5 - (in - last)); strm->avail_out = (unsigned)(out < end ? 257 + (end - out) : 257 - (out - end)); state->hold = hold; state->bits = bits; return; } /* inflate_fast() speedups that turned out slower (on a PowerPC G3 750CXe): - Using bit fields for code structure - Different op definition to avoid & for extra bits (do & for table bits) - Three separate decoding do-loops for direct, window, and wnext == 0 - Special case for distance > 1 copies to do overlapped load and store copy - Explicit branch predictions (based on measured branch probabilities) - Deferring match copy and interspersed it with decoding subsequent codes - Swapping literal/length else - Swapping window/direct else - Larger unrolled copy loops (three is about right) - Moving len -= 3 statement into middle of loop */ #endif /* !ASMINF */ healpy-1.8.1/cfitsio/zlib/zutil.c0000654000175000017530000001620012272000775017327 0ustar zoncaplanck00000000000000/* zutil.c -- target dependent utility functions for the compression library * Copyright (C) 1995-2005, 2010 Jean-loup Gailly. * For conditions of distribution and use, see copyright notice in zlib.h */ #include "zutil.h" #ifndef NO_DUMMY_DECL struct internal_state {int dummy;}; /* for buggy compilers */ #endif const char * const z_errmsg[10] = { "need dictionary", /* Z_NEED_DICT 2 */ "stream end", /* Z_STREAM_END 1 */ "", /* Z_OK 0 */ "file error", /* Z_ERRNO (-1) */ "stream error", /* Z_STREAM_ERROR (-2) */ "data error", /* Z_DATA_ERROR (-3) */ "insufficient memory", /* Z_MEM_ERROR (-4) */ "buffer error", /* Z_BUF_ERROR (-5) */ "incompatible version",/* Z_VERSION_ERROR (-6) */ ""}; const char * ZEXPORT zlibVersion() { return ZLIB_VERSION; } uLong ZEXPORT zlibCompileFlags() { uLong flags; flags = 0; switch ((int)(sizeof(uInt))) { case 2: break; case 4: flags += 1; break; case 8: flags += 2; break; default: flags += 3; } switch ((int)(sizeof(uLong))) { case 2: break; case 4: flags += 1 << 2; break; case 8: flags += 2 << 2; break; default: flags += 3 << 2; } switch ((int)(sizeof(voidpf))) { case 2: break; case 4: flags += 1 << 4; break; case 8: flags += 2 << 4; break; default: flags += 3 << 4; } switch ((int)(sizeof(z_off_t))) { case 2: break; case 4: flags += 1 << 6; break; case 8: flags += 2 << 6; break; default: flags += 3 << 6; } #ifdef DEBUG flags += 1 << 8; #endif #if defined(ASMV) || defined(ASMINF) flags += 1 << 9; #endif #ifdef ZLIB_WINAPI flags += 1 << 10; #endif #ifdef BUILDFIXED flags += 1 << 12; #endif #ifdef DYNAMIC_CRC_TABLE flags += 1 << 13; #endif #ifdef NO_GZCOMPRESS flags += 1L << 16; #endif #ifdef NO_GZIP flags += 1L << 17; #endif #ifdef PKZIP_BUG_WORKAROUND flags += 1L << 20; #endif #ifdef FASTEST flags += 1L << 21; #endif #ifdef STDC # ifdef NO_vsnprintf flags += 1L << 25; # ifdef HAS_vsprintf_void flags += 1L << 26; # endif # else # ifdef HAS_vsnprintf_void flags += 1L << 26; # endif # endif #else flags += 1L << 24; # ifdef NO_snprintf flags += 1L << 25; # ifdef HAS_sprintf_void flags += 1L << 26; # endif # else # ifdef HAS_snprintf_void flags += 1L << 26; # endif # endif #endif return flags; } #ifdef DEBUG # ifndef verbose # define verbose 0 # endif int ZLIB_INTERNAL z_verbose = verbose; void ZLIB_INTERNAL z_error (m) char *m; { fprintf(stderr, "%s\n", m); exit(1); } #endif /* exported to allow conversion of error code to string for compress() and * uncompress() */ const char * ZEXPORT zError(err) int err; { return ERR_MSG(err); } #if defined(_WIN32_WCE) /* The Microsoft C Run-Time Library for Windows CE doesn't have * errno. We define it as a global variable to simplify porting. * Its value is always 0 and should not be used. */ int errno = 0; #endif #ifndef HAVE_MEMCPY void ZLIB_INTERNAL zmemcpy(dest, source, len) Bytef* dest; const Bytef* source; uInt len; { if (len == 0) return; do { *dest++ = *source++; /* ??? to be unrolled */ } while (--len != 0); } int ZLIB_INTERNAL zmemcmp(s1, s2, len) const Bytef* s1; const Bytef* s2; uInt len; { uInt j; for (j = 0; j < len; j++) { if (s1[j] != s2[j]) return 2*(s1[j] > s2[j])-1; } return 0; } void ZLIB_INTERNAL zmemzero(dest, len) Bytef* dest; uInt len; { if (len == 0) return; do { *dest++ = 0; /* ??? to be unrolled */ } while (--len != 0); } #endif #ifdef SYS16BIT #ifdef __TURBOC__ /* Turbo C in 16-bit mode */ # define MY_ZCALLOC /* Turbo C malloc() does not allow dynamic allocation of 64K bytes * and farmalloc(64K) returns a pointer with an offset of 8, so we * must fix the pointer. Warning: the pointer must be put back to its * original form in order to free it, use zcfree(). */ #define MAX_PTR 10 /* 10*64K = 640K */ local int next_ptr = 0; typedef struct ptr_table_s { voidpf org_ptr; voidpf new_ptr; } ptr_table; local ptr_table table[MAX_PTR]; /* This table is used to remember the original form of pointers * to large buffers (64K). Such pointers are normalized with a zero offset. * Since MSDOS is not a preemptive multitasking OS, this table is not * protected from concurrent access. This hack doesn't work anyway on * a protected system like OS/2. Use Microsoft C instead. */ voidpf ZLIB_INTERNAL zcalloc (voidpf opaque, unsigned items, unsigned size) { voidpf buf = opaque; /* just to make some compilers happy */ ulg bsize = (ulg)items*size; /* If we allocate less than 65520 bytes, we assume that farmalloc * will return a usable pointer which doesn't have to be normalized. */ if (bsize < 65520L) { buf = farmalloc(bsize); if (*(ush*)&buf != 0) return buf; } else { buf = farmalloc(bsize + 16L); } if (buf == NULL || next_ptr >= MAX_PTR) return NULL; table[next_ptr].org_ptr = buf; /* Normalize the pointer to seg:0 */ *((ush*)&buf+1) += ((ush)((uch*)buf-0) + 15) >> 4; *(ush*)&buf = 0; table[next_ptr++].new_ptr = buf; return buf; } void ZLIB_INTERNAL zcfree (voidpf opaque, voidpf ptr) { int n; if (*(ush*)&ptr != 0) { /* object < 64K */ farfree(ptr); return; } /* Find the original pointer */ for (n = 0; n < next_ptr; n++) { if (ptr != table[n].new_ptr) continue; farfree(table[n].org_ptr); while (++n < next_ptr) { table[n-1] = table[n]; } next_ptr--; return; } ptr = opaque; /* just to make some compilers happy */ Assert(0, "zcfree: ptr not found"); } #endif /* __TURBOC__ */ #ifdef M_I86 /* Microsoft C in 16-bit mode */ # define MY_ZCALLOC #if (!defined(_MSC_VER) || (_MSC_VER <= 600)) # define _halloc halloc # define _hfree hfree #endif voidpf ZLIB_INTERNAL zcalloc (voidpf opaque, uInt items, uInt size) { if (opaque) opaque = 0; /* to make compiler happy */ return _halloc((long)items, size); } void ZLIB_INTERNAL zcfree (voidpf opaque, voidpf ptr) { if (opaque) opaque = 0; /* to make compiler happy */ _hfree(ptr); } #endif /* M_I86 */ #endif /* SYS16BIT */ #ifndef MY_ZCALLOC /* Any system without a special alloc function */ #ifndef STDC extern voidp malloc OF((uInt size)); extern voidp calloc OF((uInt items, uInt size)); extern void free OF((voidpf ptr)); #endif voidpf ZLIB_INTERNAL zcalloc (opaque, items, size) voidpf opaque; unsigned items; unsigned size; { if (opaque) items += size - size; /* make compiler happy */ return sizeof(uInt) > 2 ? (voidpf)malloc(items * size) : (voidpf)calloc(items, size); } void ZLIB_INTERNAL zcfree (opaque, ptr) voidpf opaque; voidpf ptr; { free(ptr); if (opaque) return; /* make compiler happy */ } #endif /* MY_ZCALLOC */ healpy-1.8.1/cfitsio/zlib/zlib.h0000654000175000017530000023331412272000775017134 0ustar zoncaplanck00000000000000/* zlib.h -- interface of the 'zlib' general purpose compression library version 1.2.5, April 19th, 2010 Copyright (C) 1995-2010 Jean-loup Gailly and Mark Adler This software is provided 'as-is', without any express or implied warranty. In no event will the authors be held liable for any damages arising from the use of this software. Permission is granted to anyone to use this software for any purpose, including commercial applications, and to alter it and redistribute it freely, subject to the following restrictions: 1. The origin of this software must not be misrepresented; you must not claim that you wrote the original software. If you use this software in a product, an acknowledgment in the product documentation would be appreciated but is not required. 2. Altered source versions must be plainly marked as such, and must not be misrepresented as being the original software. 3. This notice may not be removed or altered from any source distribution. Jean-loup Gailly Mark Adler jloup@gzip.org madler@alumni.caltech.edu The data format used by the zlib library is described by RFCs (Request for Comments) 1950 to 1952 in the files http://www.ietf.org/rfc/rfc1950.txt (zlib format), rfc1951.txt (deflate format) and rfc1952.txt (gzip format). */ #ifndef ZLIB_H #define ZLIB_H #include "zconf.h" #ifdef __cplusplus extern "C" { #endif #define ZLIB_VERSION "1.2.5" #define ZLIB_VERNUM 0x1250 #define ZLIB_VER_MAJOR 1 #define ZLIB_VER_MINOR 2 #define ZLIB_VER_REVISION 5 #define ZLIB_VER_SUBREVISION 0 /* The 'zlib' compression library provides in-memory compression and decompression functions, including integrity checks of the uncompressed data. This version of the library supports only one compression method (deflation) but other algorithms will be added later and will have the same stream interface. Compression can be done in a single step if the buffers are large enough, or can be done by repeated calls of the compression function. In the latter case, the application must provide more input and/or consume the output (providing more output space) before each call. The compressed data format used by default by the in-memory functions is the zlib format, which is a zlib wrapper documented in RFC 1950, wrapped around a deflate stream, which is itself documented in RFC 1951. The library also supports reading and writing files in gzip (.gz) format with an interface similar to that of stdio using the functions that start with "gz". The gzip format is different from the zlib format. gzip is a gzip wrapper, documented in RFC 1952, wrapped around a deflate stream. This library can optionally read and write gzip streams in memory as well. The zlib format was designed to be compact and fast for use in memory and on communications channels. The gzip format was designed for single- file compression on file systems, has a larger header than zlib to maintain directory information, and uses a different, slower check method than zlib. The library does not install any signal handler. The decoder checks the consistency of the compressed data, so the library should never crash even in case of corrupted input. */ typedef voidpf (*alloc_func) OF((voidpf opaque, uInt items, uInt size)); typedef void (*free_func) OF((voidpf opaque, voidpf address)); struct internal_state; typedef struct z_stream_s { Bytef *next_in; /* next input byte */ uInt avail_in; /* number of bytes available at next_in */ uLong total_in; /* total nb of input bytes read so far */ Bytef *next_out; /* next output byte should be put there */ uInt avail_out; /* remaining free space at next_out */ uLong total_out; /* total nb of bytes output so far */ char *msg; /* last error message, NULL if no error */ struct internal_state FAR *state; /* not visible by applications */ alloc_func zalloc; /* used to allocate the internal state */ free_func zfree; /* used to free the internal state */ voidpf opaque; /* private data object passed to zalloc and zfree */ int data_type; /* best guess about the data type: binary or text */ uLong adler; /* adler32 value of the uncompressed data */ uLong reserved; /* reserved for future use */ } z_stream; typedef z_stream FAR *z_streamp; /* gzip header information passed to and from zlib routines. See RFC 1952 for more details on the meanings of these fields. */ typedef struct gz_header_s { int text; /* true if compressed data believed to be text */ uLong time; /* modification time */ int xflags; /* extra flags (not used when writing a gzip file) */ int os; /* operating system */ Bytef *extra; /* pointer to extra field or Z_NULL if none */ uInt extra_len; /* extra field length (valid if extra != Z_NULL) */ uInt extra_max; /* space at extra (only when reading header) */ Bytef *name; /* pointer to zero-terminated file name or Z_NULL */ uInt name_max; /* space at name (only when reading header) */ Bytef *comment; /* pointer to zero-terminated comment or Z_NULL */ uInt comm_max; /* space at comment (only when reading header) */ int hcrc; /* true if there was or will be a header crc */ int done; /* true when done reading gzip header (not used when writing a gzip file) */ } gz_header; typedef gz_header FAR *gz_headerp; /* The application must update next_in and avail_in when avail_in has dropped to zero. It must update next_out and avail_out when avail_out has dropped to zero. The application must initialize zalloc, zfree and opaque before calling the init function. All other fields are set by the compression library and must not be updated by the application. The opaque value provided by the application will be passed as the first parameter for calls of zalloc and zfree. This can be useful for custom memory management. The compression library attaches no meaning to the opaque value. zalloc must return Z_NULL if there is not enough memory for the object. If zlib is used in a multi-threaded application, zalloc and zfree must be thread safe. On 16-bit systems, the functions zalloc and zfree must be able to allocate exactly 65536 bytes, but will not be required to allocate more than this if the symbol MAXSEG_64K is defined (see zconf.h). WARNING: On MSDOS, pointers returned by zalloc for objects of exactly 65536 bytes *must* have their offset normalized to zero. The default allocation function provided by this library ensures this (see zutil.c). To reduce memory requirements and avoid any allocation of 64K objects, at the expense of compression ratio, compile the library with -DMAX_WBITS=14 (see zconf.h). The fields total_in and total_out can be used for statistics or progress reports. After compression, total_in holds the total size of the uncompressed data and may be saved for use in the decompressor (particularly if the decompressor wants to decompress everything in a single step). */ /* constants */ #define Z_NO_FLUSH 0 #define Z_PARTIAL_FLUSH 1 #define Z_SYNC_FLUSH 2 #define Z_FULL_FLUSH 3 #define Z_FINISH 4 #define Z_BLOCK 5 #define Z_TREES 6 /* Allowed flush values; see deflate() and inflate() below for details */ #define Z_OK 0 #define Z_STREAM_END 1 #define Z_NEED_DICT 2 #define Z_ERRNO (-1) #define Z_STREAM_ERROR (-2) #define Z_DATA_ERROR (-3) #define Z_MEM_ERROR (-4) #define Z_BUF_ERROR (-5) #define Z_VERSION_ERROR (-6) /* Return codes for the compression/decompression functions. Negative values * are errors, positive values are used for special but normal events. */ #define Z_NO_COMPRESSION 0 #define Z_BEST_SPEED 1 #define Z_BEST_COMPRESSION 9 #define Z_DEFAULT_COMPRESSION (-1) /* compression levels */ #define Z_FILTERED 1 #define Z_HUFFMAN_ONLY 2 #define Z_RLE 3 #define Z_FIXED 4 #define Z_DEFAULT_STRATEGY 0 /* compression strategy; see deflateInit2() below for details */ #define Z_BINARY 0 #define Z_TEXT 1 #define Z_ASCII Z_TEXT /* for compatibility with 1.2.2 and earlier */ #define Z_UNKNOWN 2 /* Possible values of the data_type field (though see inflate()) */ #define Z_DEFLATED 8 /* The deflate compression method (the only one supported in this version) */ #define Z_NULL 0 /* for initializing zalloc, zfree, opaque */ #define zlib_version zlibVersion() /* for compatibility with versions < 1.0.2 */ /* basic functions */ ZEXTERN const char * ZEXPORT zlibVersion OF((void)); /* The application can compare zlibVersion and ZLIB_VERSION for consistency. If the first character differs, the library code actually used is not compatible with the zlib.h header file used by the application. This check is automatically made by deflateInit and inflateInit. */ /* ZEXTERN int ZEXPORT deflateInit OF((z_streamp strm, int level)); Initializes the internal stream state for compression. The fields zalloc, zfree and opaque must be initialized before by the caller. If zalloc and zfree are set to Z_NULL, deflateInit updates them to use default allocation functions. The compression level must be Z_DEFAULT_COMPRESSION, or between 0 and 9: 1 gives best speed, 9 gives best compression, 0 gives no compression at all (the input data is simply copied a block at a time). Z_DEFAULT_COMPRESSION requests a default compromise between speed and compression (currently equivalent to level 6). deflateInit returns Z_OK if success, Z_MEM_ERROR if there was not enough memory, Z_STREAM_ERROR if level is not a valid compression level, or Z_VERSION_ERROR if the zlib library version (zlib_version) is incompatible with the version assumed by the caller (ZLIB_VERSION). msg is set to null if there is no error message. deflateInit does not perform any compression: this will be done by deflate(). */ ZEXTERN int ZEXPORT deflate OF((z_streamp strm, int flush)); /* deflate compresses as much data as possible, and stops when the input buffer becomes empty or the output buffer becomes full. It may introduce some output latency (reading input without producing any output) except when forced to flush. The detailed semantics are as follows. deflate performs one or both of the following actions: - Compress more input starting at next_in and update next_in and avail_in accordingly. If not all input can be processed (because there is not enough room in the output buffer), next_in and avail_in are updated and processing will resume at this point for the next call of deflate(). - Provide more output starting at next_out and update next_out and avail_out accordingly. This action is forced if the parameter flush is non zero. Forcing flush frequently degrades the compression ratio, so this parameter should be set only when necessary (in interactive applications). Some output may be provided even if flush is not set. Before the call of deflate(), the application should ensure that at least one of the actions is possible, by providing more input and/or consuming more output, and updating avail_in or avail_out accordingly; avail_out should never be zero before the call. The application can consume the compressed output when it wants, for example when the output buffer is full (avail_out == 0), or after each call of deflate(). If deflate returns Z_OK and with zero avail_out, it must be called again after making room in the output buffer because there might be more output pending. Normally the parameter flush is set to Z_NO_FLUSH, which allows deflate to decide how much data to accumulate before producing output, in order to maximize compression. If the parameter flush is set to Z_SYNC_FLUSH, all pending output is flushed to the output buffer and the output is aligned on a byte boundary, so that the decompressor can get all input data available so far. (In particular avail_in is zero after the call if enough output space has been provided before the call.) Flushing may degrade compression for some compression algorithms and so it should be used only when necessary. This completes the current deflate block and follows it with an empty stored block that is three bits plus filler bits to the next byte, followed by four bytes (00 00 ff ff). If flush is set to Z_PARTIAL_FLUSH, all pending output is flushed to the output buffer, but the output is not aligned to a byte boundary. All of the input data so far will be available to the decompressor, as for Z_SYNC_FLUSH. This completes the current deflate block and follows it with an empty fixed codes block that is 10 bits long. This assures that enough bytes are output in order for the decompressor to finish the block before the empty fixed code block. If flush is set to Z_BLOCK, a deflate block is completed and emitted, as for Z_SYNC_FLUSH, but the output is not aligned on a byte boundary, and up to seven bits of the current block are held to be written as the next byte after the next deflate block is completed. In this case, the decompressor may not be provided enough bits at this point in order to complete decompression of the data provided so far to the compressor. It may need to wait for the next block to be emitted. This is for advanced applications that need to control the emission of deflate blocks. If flush is set to Z_FULL_FLUSH, all output is flushed as with Z_SYNC_FLUSH, and the compression state is reset so that decompression can restart from this point if previous compressed data has been damaged or if random access is desired. Using Z_FULL_FLUSH too often can seriously degrade compression. If deflate returns with avail_out == 0, this function must be called again with the same value of the flush parameter and more output space (updated avail_out), until the flush is complete (deflate returns with non-zero avail_out). In the case of a Z_FULL_FLUSH or Z_SYNC_FLUSH, make sure that avail_out is greater than six to avoid repeated flush markers due to avail_out == 0 on return. If the parameter flush is set to Z_FINISH, pending input is processed, pending output is flushed and deflate returns with Z_STREAM_END if there was enough output space; if deflate returns with Z_OK, this function must be called again with Z_FINISH and more output space (updated avail_out) but no more input data, until it returns with Z_STREAM_END or an error. After deflate has returned Z_STREAM_END, the only possible operations on the stream are deflateReset or deflateEnd. Z_FINISH can be used immediately after deflateInit if all the compression is to be done in a single step. In this case, avail_out must be at least the value returned by deflateBound (see below). If deflate does not return Z_STREAM_END, then it must be called again as described above. deflate() sets strm->adler to the adler32 checksum of all input read so far (that is, total_in bytes). deflate() may update strm->data_type if it can make a good guess about the input data type (Z_BINARY or Z_TEXT). In doubt, the data is considered binary. This field is only for information purposes and does not affect the compression algorithm in any manner. deflate() returns Z_OK if some progress has been made (more input processed or more output produced), Z_STREAM_END if all input has been consumed and all output has been produced (only when flush is set to Z_FINISH), Z_STREAM_ERROR if the stream state was inconsistent (for example if next_in or next_out was Z_NULL), Z_BUF_ERROR if no progress is possible (for example avail_in or avail_out was zero). Note that Z_BUF_ERROR is not fatal, and deflate() can be called again with more input and more output space to continue compressing. */ ZEXTERN int ZEXPORT deflateEnd OF((z_streamp strm)); /* All dynamically allocated data structures for this stream are freed. This function discards any unprocessed input and does not flush any pending output. deflateEnd returns Z_OK if success, Z_STREAM_ERROR if the stream state was inconsistent, Z_DATA_ERROR if the stream was freed prematurely (some input or output was discarded). In the error case, msg may be set but then points to a static string (which must not be deallocated). */ /* ZEXTERN int ZEXPORT inflateInit OF((z_streamp strm)); Initializes the internal stream state for decompression. The fields next_in, avail_in, zalloc, zfree and opaque must be initialized before by the caller. If next_in is not Z_NULL and avail_in is large enough (the exact value depends on the compression method), inflateInit determines the compression method from the zlib header and allocates all data structures accordingly; otherwise the allocation will be deferred to the first call of inflate. If zalloc and zfree are set to Z_NULL, inflateInit updates them to use default allocation functions. inflateInit returns Z_OK if success, Z_MEM_ERROR if there was not enough memory, Z_VERSION_ERROR if the zlib library version is incompatible with the version assumed by the caller, or Z_STREAM_ERROR if the parameters are invalid, such as a null pointer to the structure. msg is set to null if there is no error message. inflateInit does not perform any decompression apart from possibly reading the zlib header if present: actual decompression will be done by inflate(). (So next_in and avail_in may be modified, but next_out and avail_out are unused and unchanged.) The current implementation of inflateInit() does not process any header information -- that is deferred until inflate() is called. */ ZEXTERN int ZEXPORT inflate OF((z_streamp strm, int flush)); /* inflate decompresses as much data as possible, and stops when the input buffer becomes empty or the output buffer becomes full. It may introduce some output latency (reading input without producing any output) except when forced to flush. The detailed semantics are as follows. inflate performs one or both of the following actions: - Decompress more input starting at next_in and update next_in and avail_in accordingly. If not all input can be processed (because there is not enough room in the output buffer), next_in is updated and processing will resume at this point for the next call of inflate(). - Provide more output starting at next_out and update next_out and avail_out accordingly. inflate() provides as much output as possible, until there is no more input data or no more space in the output buffer (see below about the flush parameter). Before the call of inflate(), the application should ensure that at least one of the actions is possible, by providing more input and/or consuming more output, and updating the next_* and avail_* values accordingly. The application can consume the uncompressed output when it wants, for example when the output buffer is full (avail_out == 0), or after each call of inflate(). If inflate returns Z_OK and with zero avail_out, it must be called again after making room in the output buffer because there might be more output pending. The flush parameter of inflate() can be Z_NO_FLUSH, Z_SYNC_FLUSH, Z_FINISH, Z_BLOCK, or Z_TREES. Z_SYNC_FLUSH requests that inflate() flush as much output as possible to the output buffer. Z_BLOCK requests that inflate() stop if and when it gets to the next deflate block boundary. When decoding the zlib or gzip format, this will cause inflate() to return immediately after the header and before the first block. When doing a raw inflate, inflate() will go ahead and process the first block, and will return when it gets to the end of that block, or when it runs out of data. The Z_BLOCK option assists in appending to or combining deflate streams. Also to assist in this, on return inflate() will set strm->data_type to the number of unused bits in the last byte taken from strm->next_in, plus 64 if inflate() is currently decoding the last block in the deflate stream, plus 128 if inflate() returned immediately after decoding an end-of-block code or decoding the complete header up to just before the first byte of the deflate stream. The end-of-block will not be indicated until all of the uncompressed data from that block has been written to strm->next_out. The number of unused bits may in general be greater than seven, except when bit 7 of data_type is set, in which case the number of unused bits will be less than eight. data_type is set as noted here every time inflate() returns for all flush options, and so can be used to determine the amount of currently consumed input in bits. The Z_TREES option behaves as Z_BLOCK does, but it also returns when the end of each deflate block header is reached, before any actual data in that block is decoded. This allows the caller to determine the length of the deflate block header for later use in random access within a deflate block. 256 is added to the value of strm->data_type when inflate() returns immediately after reaching the end of the deflate block header. inflate() should normally be called until it returns Z_STREAM_END or an error. However if all decompression is to be performed in a single step (a single call of inflate), the parameter flush should be set to Z_FINISH. In this case all pending input is processed and all pending output is flushed; avail_out must be large enough to hold all the uncompressed data. (The size of the uncompressed data may have been saved by the compressor for this purpose.) The next operation on this stream must be inflateEnd to deallocate the decompression state. The use of Z_FINISH is never required, but can be used to inform inflate that a faster approach may be used for the single inflate() call. In this implementation, inflate() always flushes as much output as possible to the output buffer, and always uses the faster approach on the first call. So the only effect of the flush parameter in this implementation is on the return value of inflate(), as noted below, or when it returns early because Z_BLOCK or Z_TREES is used. If a preset dictionary is needed after this call (see inflateSetDictionary below), inflate sets strm->adler to the adler32 checksum of the dictionary chosen by the compressor and returns Z_NEED_DICT; otherwise it sets strm->adler to the adler32 checksum of all output produced so far (that is, total_out bytes) and returns Z_OK, Z_STREAM_END or an error code as described below. At the end of the stream, inflate() checks that its computed adler32 checksum is equal to that saved by the compressor and returns Z_STREAM_END only if the checksum is correct. inflate() can decompress and check either zlib-wrapped or gzip-wrapped deflate data. The header type is detected automatically, if requested when initializing with inflateInit2(). Any information contained in the gzip header is not retained, so applications that need that information should instead use raw inflate, see inflateInit2() below, or inflateBack() and perform their own processing of the gzip header and trailer. inflate() returns Z_OK if some progress has been made (more input processed or more output produced), Z_STREAM_END if the end of the compressed data has been reached and all uncompressed output has been produced, Z_NEED_DICT if a preset dictionary is needed at this point, Z_DATA_ERROR if the input data was corrupted (input stream not conforming to the zlib format or incorrect check value), Z_STREAM_ERROR if the stream structure was inconsistent (for example next_in or next_out was Z_NULL), Z_MEM_ERROR if there was not enough memory, Z_BUF_ERROR if no progress is possible or if there was not enough room in the output buffer when Z_FINISH is used. Note that Z_BUF_ERROR is not fatal, and inflate() can be called again with more input and more output space to continue decompressing. If Z_DATA_ERROR is returned, the application may then call inflateSync() to look for a good compression block if a partial recovery of the data is desired. */ ZEXTERN int ZEXPORT inflateEnd OF((z_streamp strm)); /* All dynamically allocated data structures for this stream are freed. This function discards any unprocessed input and does not flush any pending output. inflateEnd returns Z_OK if success, Z_STREAM_ERROR if the stream state was inconsistent. In the error case, msg may be set but then points to a static string (which must not be deallocated). */ /* Advanced functions */ /* The following functions are needed only in some special applications. */ /* ZEXTERN int ZEXPORT deflateInit2 OF((z_streamp strm, int level, int method, int windowBits, int memLevel, int strategy)); This is another version of deflateInit with more compression options. The fields next_in, zalloc, zfree and opaque must be initialized before by the caller. The method parameter is the compression method. It must be Z_DEFLATED in this version of the library. The windowBits parameter is the base two logarithm of the window size (the size of the history buffer). It should be in the range 8..15 for this version of the library. Larger values of this parameter result in better compression at the expense of memory usage. The default value is 15 if deflateInit is used instead. windowBits can also be -8..-15 for raw deflate. In this case, -windowBits determines the window size. deflate() will then generate raw deflate data with no zlib header or trailer, and will not compute an adler32 check value. windowBits can also be greater than 15 for optional gzip encoding. Add 16 to windowBits to write a simple gzip header and trailer around the compressed data instead of a zlib wrapper. The gzip header will have no file name, no extra data, no comment, no modification time (set to zero), no header crc, and the operating system will be set to 255 (unknown). If a gzip stream is being written, strm->adler is a crc32 instead of an adler32. The memLevel parameter specifies how much memory should be allocated for the internal compression state. memLevel=1 uses minimum memory but is slow and reduces compression ratio; memLevel=9 uses maximum memory for optimal speed. The default value is 8. See zconf.h for total memory usage as a function of windowBits and memLevel. The strategy parameter is used to tune the compression algorithm. Use the value Z_DEFAULT_STRATEGY for normal data, Z_FILTERED for data produced by a filter (or predictor), Z_HUFFMAN_ONLY to force Huffman encoding only (no string match), or Z_RLE to limit match distances to one (run-length encoding). Filtered data consists mostly of small values with a somewhat random distribution. In this case, the compression algorithm is tuned to compress them better. The effect of Z_FILTERED is to force more Huffman coding and less string matching; it is somewhat intermediate between Z_DEFAULT_STRATEGY and Z_HUFFMAN_ONLY. Z_RLE is designed to be almost as fast as Z_HUFFMAN_ONLY, but give better compression for PNG image data. The strategy parameter only affects the compression ratio but not the correctness of the compressed output even if it is not set appropriately. Z_FIXED prevents the use of dynamic Huffman codes, allowing for a simpler decoder for special applications. deflateInit2 returns Z_OK if success, Z_MEM_ERROR if there was not enough memory, Z_STREAM_ERROR if any parameter is invalid (such as an invalid method), or Z_VERSION_ERROR if the zlib library version (zlib_version) is incompatible with the version assumed by the caller (ZLIB_VERSION). msg is set to null if there is no error message. deflateInit2 does not perform any compression: this will be done by deflate(). */ ZEXTERN int ZEXPORT deflateSetDictionary OF((z_streamp strm, const Bytef *dictionary, uInt dictLength)); /* Initializes the compression dictionary from the given byte sequence without producing any compressed output. This function must be called immediately after deflateInit, deflateInit2 or deflateReset, before any call of deflate. The compressor and decompressor must use exactly the same dictionary (see inflateSetDictionary). The dictionary should consist of strings (byte sequences) that are likely to be encountered later in the data to be compressed, with the most commonly used strings preferably put towards the end of the dictionary. Using a dictionary is most useful when the data to be compressed is short and can be predicted with good accuracy; the data can then be compressed better than with the default empty dictionary. Depending on the size of the compression data structures selected by deflateInit or deflateInit2, a part of the dictionary may in effect be discarded, for example if the dictionary is larger than the window size provided in deflateInit or deflateInit2. Thus the strings most likely to be useful should be put at the end of the dictionary, not at the front. In addition, the current implementation of deflate will use at most the window size minus 262 bytes of the provided dictionary. Upon return of this function, strm->adler is set to the adler32 value of the dictionary; the decompressor may later use this value to determine which dictionary has been used by the compressor. (The adler32 value applies to the whole dictionary even if only a subset of the dictionary is actually used by the compressor.) If a raw deflate was requested, then the adler32 value is not computed and strm->adler is not set. deflateSetDictionary returns Z_OK if success, or Z_STREAM_ERROR if a parameter is invalid (e.g. dictionary being Z_NULL) or the stream state is inconsistent (for example if deflate has already been called for this stream or if the compression method is bsort). deflateSetDictionary does not perform any compression: this will be done by deflate(). */ ZEXTERN int ZEXPORT deflateCopy OF((z_streamp dest, z_streamp source)); /* Sets the destination stream as a complete copy of the source stream. This function can be useful when several compression strategies will be tried, for example when there are several ways of pre-processing the input data with a filter. The streams that will be discarded should then be freed by calling deflateEnd. Note that deflateCopy duplicates the internal compression state which can be quite large, so this strategy is slow and can consume lots of memory. deflateCopy returns Z_OK if success, Z_MEM_ERROR if there was not enough memory, Z_STREAM_ERROR if the source stream state was inconsistent (such as zalloc being Z_NULL). msg is left unchanged in both source and destination. */ ZEXTERN int ZEXPORT deflateReset OF((z_streamp strm)); /* This function is equivalent to deflateEnd followed by deflateInit, but does not free and reallocate all the internal compression state. The stream will keep the same compression level and any other attributes that may have been set by deflateInit2. deflateReset returns Z_OK if success, or Z_STREAM_ERROR if the source stream state was inconsistent (such as zalloc or state being Z_NULL). */ ZEXTERN int ZEXPORT deflateParams OF((z_streamp strm, int level, int strategy)); /* Dynamically update the compression level and compression strategy. The interpretation of level and strategy is as in deflateInit2. This can be used to switch between compression and straight copy of the input data, or to switch to a different kind of input data requiring a different strategy. If the compression level is changed, the input available so far is compressed with the old level (and may be flushed); the new level will take effect only at the next call of deflate(). Before the call of deflateParams, the stream state must be set as for a call of deflate(), since the currently available input may have to be compressed and flushed. In particular, strm->avail_out must be non-zero. deflateParams returns Z_OK if success, Z_STREAM_ERROR if the source stream state was inconsistent or if a parameter was invalid, Z_BUF_ERROR if strm->avail_out was zero. */ ZEXTERN int ZEXPORT deflateTune OF((z_streamp strm, int good_length, int max_lazy, int nice_length, int max_chain)); /* Fine tune deflate's internal compression parameters. This should only be used by someone who understands the algorithm used by zlib's deflate for searching for the best matching string, and even then only by the most fanatic optimizer trying to squeeze out the last compressed bit for their specific input data. Read the deflate.c source code for the meaning of the max_lazy, good_length, nice_length, and max_chain parameters. deflateTune() can be called after deflateInit() or deflateInit2(), and returns Z_OK on success, or Z_STREAM_ERROR for an invalid deflate stream. */ ZEXTERN uLong ZEXPORT deflateBound OF((z_streamp strm, uLong sourceLen)); /* deflateBound() returns an upper bound on the compressed size after deflation of sourceLen bytes. It must be called after deflateInit() or deflateInit2(), and after deflateSetHeader(), if used. This would be used to allocate an output buffer for deflation in a single pass, and so would be called before deflate(). */ ZEXTERN int ZEXPORT deflatePrime OF((z_streamp strm, int bits, int value)); /* deflatePrime() inserts bits in the deflate output stream. The intent is that this function is used to start off the deflate output with the bits leftover from a previous deflate stream when appending to it. As such, this function can only be used for raw deflate, and must be used before the first deflate() call after a deflateInit2() or deflateReset(). bits must be less than or equal to 16, and that many of the least significant bits of value will be inserted in the output. deflatePrime returns Z_OK if success, or Z_STREAM_ERROR if the source stream state was inconsistent. */ ZEXTERN int ZEXPORT deflateSetHeader OF((z_streamp strm, gz_headerp head)); /* deflateSetHeader() provides gzip header information for when a gzip stream is requested by deflateInit2(). deflateSetHeader() may be called after deflateInit2() or deflateReset() and before the first call of deflate(). The text, time, os, extra field, name, and comment information in the provided gz_header structure are written to the gzip header (xflag is ignored -- the extra flags are set according to the compression level). The caller must assure that, if not Z_NULL, name and comment are terminated with a zero byte, and that if extra is not Z_NULL, that extra_len bytes are available there. If hcrc is true, a gzip header crc is included. Note that the current versions of the command-line version of gzip (up through version 1.3.x) do not support header crc's, and will report that it is a "multi-part gzip file" and give up. If deflateSetHeader is not used, the default gzip header has text false, the time set to zero, and os set to 255, with no extra, name, or comment fields. The gzip header is returned to the default state by deflateReset(). deflateSetHeader returns Z_OK if success, or Z_STREAM_ERROR if the source stream state was inconsistent. */ /* ZEXTERN int ZEXPORT inflateInit2 OF((z_streamp strm, int windowBits)); This is another version of inflateInit with an extra parameter. The fields next_in, avail_in, zalloc, zfree and opaque must be initialized before by the caller. The windowBits parameter is the base two logarithm of the maximum window size (the size of the history buffer). It should be in the range 8..15 for this version of the library. The default value is 15 if inflateInit is used instead. windowBits must be greater than or equal to the windowBits value provided to deflateInit2() while compressing, or it must be equal to 15 if deflateInit2() was not used. If a compressed stream with a larger window size is given as input, inflate() will return with the error code Z_DATA_ERROR instead of trying to allocate a larger window. windowBits can also be zero to request that inflate use the window size in the zlib header of the compressed stream. windowBits can also be -8..-15 for raw inflate. In this case, -windowBits determines the window size. inflate() will then process raw deflate data, not looking for a zlib or gzip header, not generating a check value, and not looking for any check values for comparison at the end of the stream. This is for use with other formats that use the deflate compressed data format such as zip. Those formats provide their own check values. If a custom format is developed using the raw deflate format for compressed data, it is recommended that a check value such as an adler32 or a crc32 be applied to the uncompressed data as is done in the zlib, gzip, and zip formats. For most applications, the zlib format should be used as is. Note that comments above on the use in deflateInit2() applies to the magnitude of windowBits. windowBits can also be greater than 15 for optional gzip decoding. Add 32 to windowBits to enable zlib and gzip decoding with automatic header detection, or add 16 to decode only the gzip format (the zlib format will return a Z_DATA_ERROR). If a gzip stream is being decoded, strm->adler is a crc32 instead of an adler32. inflateInit2 returns Z_OK if success, Z_MEM_ERROR if there was not enough memory, Z_VERSION_ERROR if the zlib library version is incompatible with the version assumed by the caller, or Z_STREAM_ERROR if the parameters are invalid, such as a null pointer to the structure. msg is set to null if there is no error message. inflateInit2 does not perform any decompression apart from possibly reading the zlib header if present: actual decompression will be done by inflate(). (So next_in and avail_in may be modified, but next_out and avail_out are unused and unchanged.) The current implementation of inflateInit2() does not process any header information -- that is deferred until inflate() is called. */ ZEXTERN int ZEXPORT inflateSetDictionary OF((z_streamp strm, const Bytef *dictionary, uInt dictLength)); /* Initializes the decompression dictionary from the given uncompressed byte sequence. This function must be called immediately after a call of inflate, if that call returned Z_NEED_DICT. The dictionary chosen by the compressor can be determined from the adler32 value returned by that call of inflate. The compressor and decompressor must use exactly the same dictionary (see deflateSetDictionary). For raw inflate, this function can be called immediately after inflateInit2() or inflateReset() and before any call of inflate() to set the dictionary. The application must insure that the dictionary that was used for compression is provided. inflateSetDictionary returns Z_OK if success, Z_STREAM_ERROR if a parameter is invalid (e.g. dictionary being Z_NULL) or the stream state is inconsistent, Z_DATA_ERROR if the given dictionary doesn't match the expected one (incorrect adler32 value). inflateSetDictionary does not perform any decompression: this will be done by subsequent calls of inflate(). */ ZEXTERN int ZEXPORT inflateSync OF((z_streamp strm)); /* Skips invalid compressed data until a full flush point (see above the description of deflate with Z_FULL_FLUSH) can be found, or until all available input is skipped. No output is provided. inflateSync returns Z_OK if a full flush point has been found, Z_BUF_ERROR if no more input was provided, Z_DATA_ERROR if no flush point has been found, or Z_STREAM_ERROR if the stream structure was inconsistent. In the success case, the application may save the current current value of total_in which indicates where valid compressed data was found. In the error case, the application may repeatedly call inflateSync, providing more input each time, until success or end of the input data. */ ZEXTERN int ZEXPORT inflateCopy OF((z_streamp dest, z_streamp source)); /* Sets the destination stream as a complete copy of the source stream. This function can be useful when randomly accessing a large stream. The first pass through the stream can periodically record the inflate state, allowing restarting inflate at those points when randomly accessing the stream. inflateCopy returns Z_OK if success, Z_MEM_ERROR if there was not enough memory, Z_STREAM_ERROR if the source stream state was inconsistent (such as zalloc being Z_NULL). msg is left unchanged in both source and destination. */ ZEXTERN int ZEXPORT inflateReset OF((z_streamp strm)); /* This function is equivalent to inflateEnd followed by inflateInit, but does not free and reallocate all the internal decompression state. The stream will keep attributes that may have been set by inflateInit2. inflateReset returns Z_OK if success, or Z_STREAM_ERROR if the source stream state was inconsistent (such as zalloc or state being Z_NULL). */ ZEXTERN int ZEXPORT inflateReset2 OF((z_streamp strm, int windowBits)); /* This function is the same as inflateReset, but it also permits changing the wrap and window size requests. The windowBits parameter is interpreted the same as it is for inflateInit2. inflateReset2 returns Z_OK if success, or Z_STREAM_ERROR if the source stream state was inconsistent (such as zalloc or state being Z_NULL), or if the windowBits parameter is invalid. */ ZEXTERN int ZEXPORT inflatePrime OF((z_streamp strm, int bits, int value)); /* This function inserts bits in the inflate input stream. The intent is that this function is used to start inflating at a bit position in the middle of a byte. The provided bits will be used before any bytes are used from next_in. This function should only be used with raw inflate, and should be used before the first inflate() call after inflateInit2() or inflateReset(). bits must be less than or equal to 16, and that many of the least significant bits of value will be inserted in the input. If bits is negative, then the input stream bit buffer is emptied. Then inflatePrime() can be called again to put bits in the buffer. This is used to clear out bits leftover after feeding inflate a block description prior to feeding inflate codes. inflatePrime returns Z_OK if success, or Z_STREAM_ERROR if the source stream state was inconsistent. */ ZEXTERN long ZEXPORT inflateMark OF((z_streamp strm)); /* This function returns two values, one in the lower 16 bits of the return value, and the other in the remaining upper bits, obtained by shifting the return value down 16 bits. If the upper value is -1 and the lower value is zero, then inflate() is currently decoding information outside of a block. If the upper value is -1 and the lower value is non-zero, then inflate is in the middle of a stored block, with the lower value equaling the number of bytes from the input remaining to copy. If the upper value is not -1, then it is the number of bits back from the current bit position in the input of the code (literal or length/distance pair) currently being processed. In that case the lower value is the number of bytes already emitted for that code. A code is being processed if inflate is waiting for more input to complete decoding of the code, or if it has completed decoding but is waiting for more output space to write the literal or match data. inflateMark() is used to mark locations in the input data for random access, which may be at bit positions, and to note those cases where the output of a code may span boundaries of random access blocks. The current location in the input stream can be determined from avail_in and data_type as noted in the description for the Z_BLOCK flush parameter for inflate. inflateMark returns the value noted above or -1 << 16 if the provided source stream state was inconsistent. */ ZEXTERN int ZEXPORT inflateGetHeader OF((z_streamp strm, gz_headerp head)); /* inflateGetHeader() requests that gzip header information be stored in the provided gz_header structure. inflateGetHeader() may be called after inflateInit2() or inflateReset(), and before the first call of inflate(). As inflate() processes the gzip stream, head->done is zero until the header is completed, at which time head->done is set to one. If a zlib stream is being decoded, then head->done is set to -1 to indicate that there will be no gzip header information forthcoming. Note that Z_BLOCK or Z_TREES can be used to force inflate() to return immediately after header processing is complete and before any actual data is decompressed. The text, time, xflags, and os fields are filled in with the gzip header contents. hcrc is set to true if there is a header CRC. (The header CRC was valid if done is set to one.) If extra is not Z_NULL, then extra_max contains the maximum number of bytes to write to extra. Once done is true, extra_len contains the actual extra field length, and extra contains the extra field, or that field truncated if extra_max is less than extra_len. If name is not Z_NULL, then up to name_max characters are written there, terminated with a zero unless the length is greater than name_max. If comment is not Z_NULL, then up to comm_max characters are written there, terminated with a zero unless the length is greater than comm_max. When any of extra, name, or comment are not Z_NULL and the respective field is not present in the header, then that field is set to Z_NULL to signal its absence. This allows the use of deflateSetHeader() with the returned structure to duplicate the header. However if those fields are set to allocated memory, then the application will need to save those pointers elsewhere so that they can be eventually freed. If inflateGetHeader is not used, then the header information is simply discarded. The header is always checked for validity, including the header CRC if present. inflateReset() will reset the process to discard the header information. The application would need to call inflateGetHeader() again to retrieve the header from the next gzip stream. inflateGetHeader returns Z_OK if success, or Z_STREAM_ERROR if the source stream state was inconsistent. */ /* ZEXTERN int ZEXPORT inflateBackInit OF((z_streamp strm, int windowBits, unsigned char FAR *window)); Initialize the internal stream state for decompression using inflateBack() calls. The fields zalloc, zfree and opaque in strm must be initialized before the call. If zalloc and zfree are Z_NULL, then the default library- derived memory allocation routines are used. windowBits is the base two logarithm of the window size, in the range 8..15. window is a caller supplied buffer of that size. Except for special applications where it is assured that deflate was used with small window sizes, windowBits must be 15 and a 32K byte window must be supplied to be able to decompress general deflate streams. See inflateBack() for the usage of these routines. inflateBackInit will return Z_OK on success, Z_STREAM_ERROR if any of the paramaters are invalid, Z_MEM_ERROR if the internal state could not be allocated, or Z_VERSION_ERROR if the version of the library does not match the version of the header file. */ typedef unsigned (*in_func) OF((void FAR *, unsigned char FAR * FAR *)); typedef int (*out_func) OF((void FAR *, unsigned char FAR *, unsigned)); ZEXTERN int ZEXPORT inflateBack OF((z_streamp strm, in_func in, void FAR *in_desc, out_func out, void FAR *out_desc)); /* inflateBack() does a raw inflate with a single call using a call-back interface for input and output. This is more efficient than inflate() for file i/o applications in that it avoids copying between the output and the sliding window by simply making the window itself the output buffer. This function trusts the application to not change the output buffer passed by the output function, at least until inflateBack() returns. inflateBackInit() must be called first to allocate the internal state and to initialize the state with the user-provided window buffer. inflateBack() may then be used multiple times to inflate a complete, raw deflate stream with each call. inflateBackEnd() is then called to free the allocated state. A raw deflate stream is one with no zlib or gzip header or trailer. This routine would normally be used in a utility that reads zip or gzip files and writes out uncompressed files. The utility would decode the header and process the trailer on its own, hence this routine expects only the raw deflate stream to decompress. This is different from the normal behavior of inflate(), which expects either a zlib or gzip header and trailer around the deflate stream. inflateBack() uses two subroutines supplied by the caller that are then called by inflateBack() for input and output. inflateBack() calls those routines until it reads a complete deflate stream and writes out all of the uncompressed data, or until it encounters an error. The function's parameters and return types are defined above in the in_func and out_func typedefs. inflateBack() will call in(in_desc, &buf) which should return the number of bytes of provided input, and a pointer to that input in buf. If there is no input available, in() must return zero--buf is ignored in that case--and inflateBack() will return a buffer error. inflateBack() will call out(out_desc, buf, len) to write the uncompressed data buf[0..len-1]. out() should return zero on success, or non-zero on failure. If out() returns non-zero, inflateBack() will return with an error. Neither in() nor out() are permitted to change the contents of the window provided to inflateBackInit(), which is also the buffer that out() uses to write from. The length written by out() will be at most the window size. Any non-zero amount of input may be provided by in(). For convenience, inflateBack() can be provided input on the first call by setting strm->next_in and strm->avail_in. If that input is exhausted, then in() will be called. Therefore strm->next_in must be initialized before calling inflateBack(). If strm->next_in is Z_NULL, then in() will be called immediately for input. If strm->next_in is not Z_NULL, then strm->avail_in must also be initialized, and then if strm->avail_in is not zero, input will initially be taken from strm->next_in[0 .. strm->avail_in - 1]. The in_desc and out_desc parameters of inflateBack() is passed as the first parameter of in() and out() respectively when they are called. These descriptors can be optionally used to pass any information that the caller- supplied in() and out() functions need to do their job. On return, inflateBack() will set strm->next_in and strm->avail_in to pass back any unused input that was provided by the last in() call. The return values of inflateBack() can be Z_STREAM_END on success, Z_BUF_ERROR if in() or out() returned an error, Z_DATA_ERROR if there was a format error in the deflate stream (in which case strm->msg is set to indicate the nature of the error), or Z_STREAM_ERROR if the stream was not properly initialized. In the case of Z_BUF_ERROR, an input or output error can be distinguished using strm->next_in which will be Z_NULL only if in() returned an error. If strm->next_in is not Z_NULL, then the Z_BUF_ERROR was due to out() returning non-zero. (in() will always be called before out(), so strm->next_in is assured to be defined if out() returns non-zero.) Note that inflateBack() cannot return Z_OK. */ ZEXTERN int ZEXPORT inflateBackEnd OF((z_streamp strm)); /* All memory allocated by inflateBackInit() is freed. inflateBackEnd() returns Z_OK on success, or Z_STREAM_ERROR if the stream state was inconsistent. */ ZEXTERN uLong ZEXPORT zlibCompileFlags OF((void)); /* Return flags indicating compile-time options. Type sizes, two bits each, 00 = 16 bits, 01 = 32, 10 = 64, 11 = other: 1.0: size of uInt 3.2: size of uLong 5.4: size of voidpf (pointer) 7.6: size of z_off_t Compiler, assembler, and debug options: 8: DEBUG 9: ASMV or ASMINF -- use ASM code 10: ZLIB_WINAPI -- exported functions use the WINAPI calling convention 11: 0 (reserved) One-time table building (smaller code, but not thread-safe if true): 12: BUILDFIXED -- build static block decoding tables when needed 13: DYNAMIC_CRC_TABLE -- build CRC calculation tables when needed 14,15: 0 (reserved) Library content (indicates missing functionality): 16: NO_GZCOMPRESS -- gz* functions cannot compress (to avoid linking deflate code when not needed) 17: NO_GZIP -- deflate can't write gzip streams, and inflate can't detect and decode gzip streams (to avoid linking crc code) 18-19: 0 (reserved) Operation variations (changes in library functionality): 20: PKZIP_BUG_WORKAROUND -- slightly more permissive inflate 21: FASTEST -- deflate algorithm with only one, lowest compression level 22,23: 0 (reserved) The sprintf variant used by gzprintf (zero is best): 24: 0 = vs*, 1 = s* -- 1 means limited to 20 arguments after the format 25: 0 = *nprintf, 1 = *printf -- 1 means gzprintf() not secure! 26: 0 = returns value, 1 = void -- 1 means inferred string length returned Remainder: 27-31: 0 (reserved) */ /* utility functions */ /* The following utility functions are implemented on top of the basic stream-oriented functions. To simplify the interface, some default options are assumed (compression level and memory usage, standard memory allocation functions). The source code of these utility functions can be modified if you need special options. */ ZEXTERN int ZEXPORT compress OF((Bytef *dest, uLongf *destLen, const Bytef *source, uLong sourceLen)); /* Compresses the source buffer into the destination buffer. sourceLen is the byte length of the source buffer. Upon entry, destLen is the total size of the destination buffer, which must be at least the value returned by compressBound(sourceLen). Upon exit, destLen is the actual size of the compressed buffer. compress returns Z_OK if success, Z_MEM_ERROR if there was not enough memory, Z_BUF_ERROR if there was not enough room in the output buffer. */ ZEXTERN int ZEXPORT compress2 OF((Bytef *dest, uLongf *destLen, const Bytef *source, uLong sourceLen, int level)); /* Compresses the source buffer into the destination buffer. The level parameter has the same meaning as in deflateInit. sourceLen is the byte length of the source buffer. Upon entry, destLen is the total size of the destination buffer, which must be at least the value returned by compressBound(sourceLen). Upon exit, destLen is the actual size of the compressed buffer. compress2 returns Z_OK if success, Z_MEM_ERROR if there was not enough memory, Z_BUF_ERROR if there was not enough room in the output buffer, Z_STREAM_ERROR if the level parameter is invalid. */ ZEXTERN uLong ZEXPORT compressBound OF((uLong sourceLen)); /* compressBound() returns an upper bound on the compressed size after compress() or compress2() on sourceLen bytes. It would be used before a compress() or compress2() call to allocate the destination buffer. */ ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen, const Bytef *source, uLong sourceLen)); /* Decompresses the source buffer into the destination buffer. sourceLen is the byte length of the source buffer. Upon entry, destLen is the total size of the destination buffer, which must be large enough to hold the entire uncompressed data. (The size of the uncompressed data must have been saved previously by the compressor and transmitted to the decompressor by some mechanism outside the scope of this compression library.) Upon exit, destLen is the actual size of the uncompressed buffer. uncompress returns Z_OK if success, Z_MEM_ERROR if there was not enough memory, Z_BUF_ERROR if there was not enough room in the output buffer, or Z_DATA_ERROR if the input data was corrupted or incomplete. */ /* gzip file access functions */ /* This library supports reading and writing files in gzip (.gz) format with an interface similar to that of stdio, using the functions that start with "gz". The gzip format is different from the zlib format. gzip is a gzip wrapper, documented in RFC 1952, wrapped around a deflate stream. */ typedef voidp gzFile; /* opaque gzip file descriptor */ /* ZEXTERN gzFile ZEXPORT gzopen OF((const char *path, const char *mode)); Opens a gzip (.gz) file for reading or writing. The mode parameter is as in fopen ("rb" or "wb") but can also include a compression level ("wb9") or a strategy: 'f' for filtered data as in "wb6f", 'h' for Huffman-only compression as in "wb1h", 'R' for run-length encoding as in "wb1R", or 'F' for fixed code compression as in "wb9F". (See the description of deflateInit2 for more information about the strategy parameter.) Also "a" can be used instead of "w" to request that the gzip stream that will be written be appended to the file. "+" will result in an error, since reading and writing to the same gzip file is not supported. gzopen can be used to read a file which is not in gzip format; in this case gzread will directly read from the file without decompression. gzopen returns NULL if the file could not be opened, if there was insufficient memory to allocate the gzFile state, or if an invalid mode was specified (an 'r', 'w', or 'a' was not provided, or '+' was provided). errno can be checked to determine if the reason gzopen failed was that the file could not be opened. */ ZEXTERN gzFile ZEXPORT gzdopen OF((int fd, const char *mode)); /* gzdopen associates a gzFile with the file descriptor fd. File descriptors are obtained from calls like open, dup, creat, pipe or fileno (if the file has been previously opened with fopen). The mode parameter is as in gzopen. The next call of gzclose on the returned gzFile will also close the file descriptor fd, just like fclose(fdopen(fd, mode)) closes the file descriptor fd. If you want to keep fd open, use fd = dup(fd_keep); gz = gzdopen(fd, mode);. The duplicated descriptor should be saved to avoid a leak, since gzdopen does not close fd if it fails. gzdopen returns NULL if there was insufficient memory to allocate the gzFile state, if an invalid mode was specified (an 'r', 'w', or 'a' was not provided, or '+' was provided), or if fd is -1. The file descriptor is not used until the next gz* read, write, seek, or close operation, so gzdopen will not detect if fd is invalid (unless fd is -1). */ ZEXTERN int ZEXPORT gzbuffer OF((gzFile file, unsigned size)); /* Set the internal buffer size used by this library's functions. The default buffer size is 8192 bytes. This function must be called after gzopen() or gzdopen(), and before any other calls that read or write the file. The buffer memory allocation is always deferred to the first read or write. Two buffers are allocated, either both of the specified size when writing, or one of the specified size and the other twice that size when reading. A larger buffer size of, for example, 64K or 128K bytes will noticeably increase the speed of decompression (reading). The new buffer size also affects the maximum length for gzprintf(). gzbuffer() returns 0 on success, or -1 on failure, such as being called too late. */ ZEXTERN int ZEXPORT gzsetparams OF((gzFile file, int level, int strategy)); /* Dynamically update the compression level or strategy. See the description of deflateInit2 for the meaning of these parameters. gzsetparams returns Z_OK if success, or Z_STREAM_ERROR if the file was not opened for writing. */ ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len)); /* Reads the given number of uncompressed bytes from the compressed file. If the input file was not in gzip format, gzread copies the given number of bytes into the buffer. After reaching the end of a gzip stream in the input, gzread will continue to read, looking for another gzip stream, or failing that, reading the rest of the input file directly without decompression. The entire input file will be read if gzread is called until it returns less than the requested len. gzread returns the number of uncompressed bytes actually read, less than len for end of file, or -1 for error. */ ZEXTERN int ZEXPORT gzwrite OF((gzFile file, voidpc buf, unsigned len)); /* Writes the given number of uncompressed bytes into the compressed file. gzwrite returns the number of uncompressed bytes written or 0 in case of error. */ ZEXTERN int ZEXPORTVA gzprintf OF((gzFile file, const char *format, ...)); /* Converts, formats, and writes the arguments to the compressed file under control of the format string, as in fprintf. gzprintf returns the number of uncompressed bytes actually written, or 0 in case of error. The number of uncompressed bytes written is limited to 8191, or one less than the buffer size given to gzbuffer(). The caller should assure that this limit is not exceeded. If it is exceeded, then gzprintf() will return an error (0) with nothing written. In this case, there may also be a buffer overflow with unpredictable consequences, which is possible only if zlib was compiled with the insecure functions sprintf() or vsprintf() because the secure snprintf() or vsnprintf() functions were not available. This can be determined using zlibCompileFlags(). */ ZEXTERN int ZEXPORT gzputs OF((gzFile file, const char *s)); /* Writes the given null-terminated string to the compressed file, excluding the terminating null character. gzputs returns the number of characters written, or -1 in case of error. */ ZEXTERN char * ZEXPORT gzgets OF((gzFile file, char *buf, int len)); /* Reads bytes from the compressed file until len-1 characters are read, or a newline character is read and transferred to buf, or an end-of-file condition is encountered. If any characters are read or if len == 1, the string is terminated with a null character. If no characters are read due to an end-of-file or len < 1, then the buffer is left untouched. gzgets returns buf which is a null-terminated string, or it returns NULL for end-of-file or in case of error. If there was an error, the contents at buf are indeterminate. */ ZEXTERN int ZEXPORT gzputc OF((gzFile file, int c)); /* Writes c, converted to an unsigned char, into the compressed file. gzputc returns the value that was written, or -1 in case of error. */ ZEXTERN int ZEXPORT gzgetc OF((gzFile file)); /* Reads one byte from the compressed file. gzgetc returns this byte or -1 in case of end of file or error. */ ZEXTERN int ZEXPORT gzungetc OF((int c, gzFile file)); /* Push one character back onto the stream to be read as the first character on the next read. At least one character of push-back is allowed. gzungetc() returns the character pushed, or -1 on failure. gzungetc() will fail if c is -1, and may fail if a character has been pushed but not read yet. If gzungetc is used immediately after gzopen or gzdopen, at least the output buffer size of pushed characters is allowed. (See gzbuffer above.) The pushed character will be discarded if the stream is repositioned with gzseek() or gzrewind(). */ ZEXTERN int ZEXPORT gzflush OF((gzFile file, int flush)); /* Flushes all pending output into the compressed file. The parameter flush is as in the deflate() function. The return value is the zlib error number (see function gzerror below). gzflush is only permitted when writing. If the flush parameter is Z_FINISH, the remaining data is written and the gzip stream is completed in the output. If gzwrite() is called again, a new gzip stream will be started in the output. gzread() is able to read such concatented gzip streams. gzflush should be called only when strictly necessary because it will degrade compression if called too often. */ /* ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile file, z_off_t offset, int whence)); Sets the starting position for the next gzread or gzwrite on the given compressed file. The offset represents a number of bytes in the uncompressed data stream. The whence parameter is defined as in lseek(2); the value SEEK_END is not supported. If the file is opened for reading, this function is emulated but can be extremely slow. If the file is opened for writing, only forward seeks are supported; gzseek then compresses a sequence of zeroes up to the new starting position. gzseek returns the resulting offset location as measured in bytes from the beginning of the uncompressed stream, or -1 in case of error, in particular if the file is opened for writing and the new starting position would be before the current position. */ ZEXTERN int ZEXPORT gzrewind OF((gzFile file)); /* Rewinds the given file. This function is supported only for reading. gzrewind(file) is equivalent to (int)gzseek(file, 0L, SEEK_SET) */ /* ZEXTERN z_off_t ZEXPORT gztell OF((gzFile file)); Returns the starting position for the next gzread or gzwrite on the given compressed file. This position represents a number of bytes in the uncompressed data stream, and is zero when starting, even if appending or reading a gzip stream from the middle of a file using gzdopen(). gztell(file) is equivalent to gzseek(file, 0L, SEEK_CUR) */ /* ZEXTERN z_off_t ZEXPORT gzoffset OF((gzFile file)); Returns the current offset in the file being read or written. This offset includes the count of bytes that precede the gzip stream, for example when appending or when using gzdopen() for reading. When reading, the offset does not include as yet unused buffered input. This information can be used for a progress indicator. On error, gzoffset() returns -1. */ ZEXTERN int ZEXPORT gzeof OF((gzFile file)); /* Returns true (1) if the end-of-file indicator has been set while reading, false (0) otherwise. Note that the end-of-file indicator is set only if the read tried to go past the end of the input, but came up short. Therefore, just like feof(), gzeof() may return false even if there is no more data to read, in the event that the last read request was for the exact number of bytes remaining in the input file. This will happen if the input file size is an exact multiple of the buffer size. If gzeof() returns true, then the read functions will return no more data, unless the end-of-file indicator is reset by gzclearerr() and the input file has grown since the previous end of file was detected. */ ZEXTERN int ZEXPORT gzdirect OF((gzFile file)); /* Returns true (1) if file is being copied directly while reading, or false (0) if file is a gzip stream being decompressed. This state can change from false to true while reading the input file if the end of a gzip stream is reached, but is followed by data that is not another gzip stream. If the input file is empty, gzdirect() will return true, since the input does not contain a gzip stream. If gzdirect() is used immediately after gzopen() or gzdopen() it will cause buffers to be allocated to allow reading the file to determine if it is a gzip file. Therefore if gzbuffer() is used, it should be called before gzdirect(). */ ZEXTERN int ZEXPORT gzclose OF((gzFile file)); /* Flushes all pending output if necessary, closes the compressed file and deallocates the (de)compression state. Note that once file is closed, you cannot call gzerror with file, since its structures have been deallocated. gzclose must not be called more than once on the same file, just as free must not be called more than once on the same allocation. gzclose will return Z_STREAM_ERROR if file is not valid, Z_ERRNO on a file operation error, or Z_OK on success. */ ZEXTERN int ZEXPORT gzclose_r OF((gzFile file)); ZEXTERN int ZEXPORT gzclose_w OF((gzFile file)); /* Same as gzclose(), but gzclose_r() is only for use when reading, and gzclose_w() is only for use when writing or appending. The advantage to using these instead of gzclose() is that they avoid linking in zlib compression or decompression code that is not used when only reading or only writing respectively. If gzclose() is used, then both compression and decompression code will be included the application when linking to a static zlib library. */ ZEXTERN const char * ZEXPORT gzerror OF((gzFile file, int *errnum)); /* Returns the error message for the last error which occurred on the given compressed file. errnum is set to zlib error number. If an error occurred in the file system and not in the compression library, errnum is set to Z_ERRNO and the application may consult errno to get the exact error code. The application must not modify the returned string. Future calls to this function may invalidate the previously returned string. If file is closed, then the string previously returned by gzerror will no longer be available. gzerror() should be used to distinguish errors from end-of-file for those functions above that do not distinguish those cases in their return values. */ ZEXTERN void ZEXPORT gzclearerr OF((gzFile file)); /* Clears the error and end-of-file flags for file. This is analogous to the clearerr() function in stdio. This is useful for continuing to read a gzip file that is being written concurrently. */ /* checksum functions */ /* These functions are not related to compression but are exported anyway because they might be useful in applications using the compression library. */ ZEXTERN uLong ZEXPORT adler32 OF((uLong adler, const Bytef *buf, uInt len)); /* Update a running Adler-32 checksum with the bytes buf[0..len-1] and return the updated checksum. If buf is Z_NULL, this function returns the required initial value for the checksum. An Adler-32 checksum is almost as reliable as a CRC32 but can be computed much faster. Usage example: uLong adler = adler32(0L, Z_NULL, 0); while (read_buffer(buffer, length) != EOF) { adler = adler32(adler, buffer, length); } if (adler != original_adler) error(); */ /* ZEXTERN uLong ZEXPORT adler32_combine OF((uLong adler1, uLong adler2, z_off_t len2)); Combine two Adler-32 checksums into one. For two sequences of bytes, seq1 and seq2 with lengths len1 and len2, Adler-32 checksums were calculated for each, adler1 and adler2. adler32_combine() returns the Adler-32 checksum of seq1 and seq2 concatenated, requiring only adler1, adler2, and len2. */ ZEXTERN uLong ZEXPORT crc32 OF((uLong crc, const Bytef *buf, uInt len)); /* Update a running CRC-32 with the bytes buf[0..len-1] and return the updated CRC-32. If buf is Z_NULL, this function returns the required initial value for the for the crc. Pre- and post-conditioning (one's complement) is performed within this function so it shouldn't be done by the application. Usage example: uLong crc = crc32(0L, Z_NULL, 0); while (read_buffer(buffer, length) != EOF) { crc = crc32(crc, buffer, length); } if (crc != original_crc) error(); */ /* ZEXTERN uLong ZEXPORT crc32_combine OF((uLong crc1, uLong crc2, z_off_t len2)); Combine two CRC-32 check values into one. For two sequences of bytes, seq1 and seq2 with lengths len1 and len2, CRC-32 check values were calculated for each, crc1 and crc2. crc32_combine() returns the CRC-32 check value of seq1 and seq2 concatenated, requiring only crc1, crc2, and len2. */ /* various hacks, don't look :) */ /* deflateInit and inflateInit are macros to allow checking the zlib version * and the compiler's view of z_stream: */ ZEXTERN int ZEXPORT deflateInit_ OF((z_streamp strm, int level, const char *version, int stream_size)); ZEXTERN int ZEXPORT inflateInit_ OF((z_streamp strm, const char *version, int stream_size)); ZEXTERN int ZEXPORT deflateInit2_ OF((z_streamp strm, int level, int method, int windowBits, int memLevel, int strategy, const char *version, int stream_size)); ZEXTERN int ZEXPORT inflateInit2_ OF((z_streamp strm, int windowBits, const char *version, int stream_size)); ZEXTERN int ZEXPORT inflateBackInit_ OF((z_streamp strm, int windowBits, unsigned char FAR *window, const char *version, int stream_size)); #define deflateInit(strm, level) \ deflateInit_((strm), (level), ZLIB_VERSION, sizeof(z_stream)) #define inflateInit(strm) \ inflateInit_((strm), ZLIB_VERSION, sizeof(z_stream)) #define deflateInit2(strm, level, method, windowBits, memLevel, strategy) \ deflateInit2_((strm),(level),(method),(windowBits),(memLevel),\ (strategy), ZLIB_VERSION, sizeof(z_stream)) #define inflateInit2(strm, windowBits) \ inflateInit2_((strm), (windowBits), ZLIB_VERSION, sizeof(z_stream)) #define inflateBackInit(strm, windowBits, window) \ inflateBackInit_((strm), (windowBits), (window), \ ZLIB_VERSION, sizeof(z_stream)) /* provide 64-bit offset functions if _LARGEFILE64_SOURCE defined, and/or * change the regular functions to 64 bits if _FILE_OFFSET_BITS is 64 (if * both are true, the application gets the *64 functions, and the regular * functions are changed to 64 bits) -- in case these are set on systems * without large file support, _LFS64_LARGEFILE must also be true */ #if defined(_LARGEFILE64_SOURCE) && _LFS64_LARGEFILE-0 ZEXTERN gzFile ZEXPORT gzopen64 OF((const char *, const char *)); ZEXTERN z_off64_t ZEXPORT gzseek64 OF((gzFile, z_off64_t, int)); ZEXTERN z_off64_t ZEXPORT gztell64 OF((gzFile)); ZEXTERN z_off64_t ZEXPORT gzoffset64 OF((gzFile)); ZEXTERN uLong ZEXPORT adler32_combine64 OF((uLong, uLong, z_off64_t)); ZEXTERN uLong ZEXPORT crc32_combine64 OF((uLong, uLong, z_off64_t)); #endif #if !defined(ZLIB_INTERNAL) && _FILE_OFFSET_BITS-0 == 64 && _LFS64_LARGEFILE-0 # define gzopen gzopen64 # define gzseek gzseek64 # define gztell gztell64 # define gzoffset gzoffset64 # define adler32_combine adler32_combine64 # define crc32_combine crc32_combine64 # ifdef _LARGEFILE64_SOURCE ZEXTERN gzFile ZEXPORT gzopen64 OF((const char *, const char *)); ZEXTERN z_off_t ZEXPORT gzseek64 OF((gzFile, z_off_t, int)); ZEXTERN z_off_t ZEXPORT gztell64 OF((gzFile)); ZEXTERN z_off_t ZEXPORT gzoffset64 OF((gzFile)); ZEXTERN uLong ZEXPORT adler32_combine64 OF((uLong, uLong, z_off_t)); ZEXTERN uLong ZEXPORT crc32_combine64 OF((uLong, uLong, z_off_t)); # endif #else ZEXTERN gzFile ZEXPORT gzopen OF((const char *, const char *)); ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ZEXTERN z_off_t ZEXPORT gztell OF((gzFile)); ZEXTERN z_off_t ZEXPORT gzoffset OF((gzFile)); ZEXTERN uLong ZEXPORT adler32_combine OF((uLong, uLong, z_off_t)); ZEXTERN uLong ZEXPORT crc32_combine OF((uLong, uLong, z_off_t)); #endif /* hack for buggy compilers */ #if !defined(ZUTIL_H) && !defined(NO_DUMMY_DECL) struct internal_state {int dummy;}; #endif /* undocumented functions */ ZEXTERN const char * ZEXPORT zError OF((int)); ZEXTERN int ZEXPORT inflateSyncPoint OF((z_streamp)); ZEXTERN const uLongf * ZEXPORT get_crc_table OF((void)); ZEXTERN int ZEXPORT inflateUndermine OF((z_streamp, int)); #ifdef __cplusplus } #endif #endif /* ZLIB_H */ healpy-1.8.1/cfitsio/zlib/inftrees.h0000654000175000017530000000556012272000775020013 0ustar zoncaplanck00000000000000/* inftrees.h -- header to use inftrees.c * Copyright (C) 1995-2005, 2010 Mark Adler * For conditions of distribution and use, see copyright notice in zlib.h */ /* WARNING: this file should *not* be used by applications. It is part of the implementation of the compression library and is subject to change. Applications should only use zlib.h. */ /* Structure for decoding tables. Each entry provides either the information needed to do the operation requested by the code that indexed that table entry, or it provides a pointer to another table that indexes more bits of the code. op indicates whether the entry is a pointer to another table, a literal, a length or distance, an end-of-block, or an invalid code. For a table pointer, the low four bits of op is the number of index bits of that table. For a length or distance, the low four bits of op is the number of extra bits to get after the code. bits is the number of bits in this code or part of the code to drop off of the bit buffer. val is the actual byte to output in the case of a literal, the base length or distance, or the offset from the current table to the next table. Each entry is four bytes. */ typedef struct { unsigned char op; /* operation, extra bits, table bits */ unsigned char bits; /* bits in this part of the code */ unsigned short val; /* offset in table or code value */ } code; /* op values as set by inflate_table(): 00000000 - literal 0000tttt - table link, tttt != 0 is the number of table index bits 0001eeee - length or distance, eeee is the number of extra bits 01100000 - end of block 01000000 - invalid code */ /* Maximum size of the dynamic table. The maximum number of code structures is 1444, which is the sum of 852 for literal/length codes and 592 for distance codes. These values were found by exhaustive searches using the program examples/enough.c found in the zlib distribtution. The arguments to that program are the number of symbols, the initial root table size, and the maximum bit length of a code. "enough 286 9 15" for literal/length codes returns returns 852, and "enough 30 6 15" for distance codes returns 592. The initial root table size (9 or 6) is found in the fifth argument of the inflate_table() calls in inflate.c and infback.c. If the root table size is changed, then these maximum sizes would be need to be recalculated and updated. */ #define ENOUGH_LENS 852 #define ENOUGH_DISTS 592 #define ENOUGH (ENOUGH_LENS+ENOUGH_DISTS) /* Type of code to build for inflate_table() */ typedef enum { CODES, LENS, DISTS } codetype; int ZLIB_INTERNAL inflate_table OF((codetype type, unsigned short FAR *lens, unsigned codes, code FAR * FAR *table, unsigned FAR *bits, unsigned short FAR *work)); healpy-1.8.1/cfitsio/zlib/zuncompress.c0000654000175000017530000004005112272000775020551 0ustar zoncaplanck00000000000000/* gzcompress.h -- definitions for the .Z decompression routine used in CFITSIO */ #include #include #include #include #define get_char() get_byte() /* gzip.h -- common declarations for all gzip modules */ #define OF(args) args typedef void *voidp; #define memzero(s, n) memset ((voidp)(s), 0, (n)) typedef unsigned char uch; typedef unsigned short ush; typedef unsigned long ulg; /* private version of MIN function */ #define MINZIP(a,b) ((a) <= (b) ? (a) : (b)) /* Return codes from gzip */ #define OK 0 #define ERROR 1 #define COMPRESSED 1 #define DEFLATED 8 #define INBUFSIZ 0x8000 /* input buffer size */ #define INBUF_EXTRA 64 /* required by unlzw() */ #define OUTBUFSIZ 16384 /* output buffer size */ #define OUTBUF_EXTRA 2048 /* required by unlzw() */ #define DIST_BUFSIZE 0x8000 /* buffer for distances, see trees.c */ #define WSIZE 0x8000 /* window size--must be a power of two, and */ #define DECLARE(type, array, size) type array[size] #define tab_suffix window #define tab_prefix prev /* hash link (see deflate.c) */ #define head (prev+WSIZE) /* hash head (see deflate.c) */ #define LZW_MAGIC "\037\235" /* Magic header for lzw files, 1F 9D */ #define get_byte() (inptr < insize ? inbuf[inptr++] : fill_inbuf(0)) /* Diagnostic functions */ # define Assert(cond,msg) # define Trace(x) # define Tracev(x) # define Tracevv(x) # define Tracec(c,x) # define Tracecv(c,x) /* lzw.h -- define the lzw functions. */ #ifndef BITS # define BITS 16 #endif #define INIT_BITS 9 /* Initial number of bits per code */ #define BIT_MASK 0x1f /* Mask for 'number of compression bits' */ #define BLOCK_MODE 0x80 #define LZW_RESERVED 0x60 /* reserved bits */ #define CLEAR 256 /* flush the dictionary */ #define FIRST (CLEAR+1) /* first free entry */ /* prototypes */ #define local static void ffpmsg(const char *err_message); local int fill_inbuf OF((int eof_ok)); local void write_buf OF((voidp buf, unsigned cnt)); local void error OF((char *m)); local int unlzw OF((FILE *in, FILE *out)); typedef int file_t; /* Do not use stdio */ int (*work) OF((FILE *infile, FILE *outfile)) = unlzw; /* function to call */ local void error OF((char *m)); /* global buffers */ static DECLARE(uch, inbuf, INBUFSIZ +INBUF_EXTRA); static DECLARE(uch, outbuf, OUTBUFSIZ+OUTBUF_EXTRA); static DECLARE(ush, d_buf, DIST_BUFSIZE); static DECLARE(uch, window, 2L*WSIZE); #ifndef MAXSEG_64K static DECLARE(ush, tab_prefix, 1L< 0) return(*status); /* save input parameters into global variables */ ifname[0] = '\0'; strncat(ifname, filename, 127); ifd = indiskfile; memptr = (void **) buffptr; memsize = buffsize; realloc_fn = mem_realloc; /* clear input and output buffers */ insize = inptr = 0; bytes_in = bytes_out = 0L; magic[0] = (char)get_byte(); magic[1] = (char)get_byte(); if (memcmp(magic, LZW_MAGIC, 2) != 0) { error("ERROR: input .Z file is in unrecognized compression format.\n"); return(-1); } work = unlzw; method = COMPRESSED; last_member = 1; /* do the uncompression */ if ((*work)(ifd, ofd) != OK) { method = -1; /* force cleanup */ *status = 414; /* report some sort of decompression error */ } if (filesize) *filesize = bytes_out; return(*status); } /*=========================================================================*/ /*=========================================================================*/ /* this marks the begining of the original file 'unlzw.c' */ /*=========================================================================*/ /*=========================================================================*/ /* unlzw.c -- decompress files in LZW format. * The code in this file is directly derived from the public domain 'compress' * written by Spencer Thomas, Joe Orost, James Woods, Jim McKie, Steve Davies, * Ken Turkowski, Dave Mack and Peter Jannesen. */ typedef unsigned char char_type; typedef long code_int; typedef unsigned long count_int; typedef unsigned short count_short; typedef unsigned long cmp_code_int; #define MAXCODE(n) (1L << (n)) #ifndef REGISTERS # define REGISTERS 2 #endif #define REG1 #define REG2 #define REG3 #define REG4 #define REG5 #define REG6 #define REG7 #define REG8 #define REG9 #define REG10 #define REG11 #define REG12 #define REG13 #define REG14 #define REG15 #define REG16 #if REGISTERS >= 1 # undef REG1 # define REG1 register #endif #if REGISTERS >= 2 # undef REG2 # define REG2 register #endif #if REGISTERS >= 3 # undef REG3 # define REG3 register #endif #if REGISTERS >= 4 # undef REG4 # define REG4 register #endif #if REGISTERS >= 5 # undef REG5 # define REG5 register #endif #if REGISTERS >= 6 # undef REG6 # define REG6 register #endif #if REGISTERS >= 7 # undef REG7 # define REG7 register #endif #if REGISTERS >= 8 # undef REG8 # define REG8 register #endif #if REGISTERS >= 9 # undef REG9 # define REG9 register #endif #if REGISTERS >= 10 # undef REG10 # define REG10 register #endif #if REGISTERS >= 11 # undef REG11 # define REG11 register #endif #if REGISTERS >= 12 # undef REG12 # define REG12 register #endif #if REGISTERS >= 13 # undef REG13 # define REG13 register #endif #if REGISTERS >= 14 # undef REG14 # define REG14 register #endif #if REGISTERS >= 15 # undef REG15 # define REG15 register #endif #if REGISTERS >= 16 # undef REG16 # define REG16 register #endif #ifndef BYTEORDER # define BYTEORDER 0000 #endif #ifndef NOALLIGN # define NOALLIGN 0 #endif union bytes { long word; struct { #if BYTEORDER == 4321 char_type b1; char_type b2; char_type b3; char_type b4; #else #if BYTEORDER == 1234 char_type b4; char_type b3; char_type b2; char_type b1; #else # undef BYTEORDER int dummy; #endif #endif } bytes; }; #if BYTEORDER == 4321 && NOALLIGN == 1 # define input(b,o,c,n,m){ \ (c) = (*(long *)(&(b)[(o)>>3])>>((o)&0x7))&(m); \ (o) += (n); \ } #else # define input(b,o,c,n,m){ \ REG1 char_type *p = &(b)[(o)>>3]; \ (c) = ((((long)(p[0]))|((long)(p[1])<<8)| \ ((long)(p[2])<<16))>>((o)&0x7))&(m); \ (o) += (n); \ } #endif #ifndef MAXSEG_64K /* DECLARE(ush, tab_prefix, (1<>1] # define clear_tab_prefixof() \ memzero(tab_prefix0, 128), \ memzero(tab_prefix1, 128); #endif #define de_stack ((char_type *)(&d_buf[DIST_BUFSIZE-1])) #define tab_suffixof(i) tab_suffix[i] int block_mode = BLOCK_MODE; /* block compress mode -C compatible with 2.0 */ /* ============================================================================ * Decompress in to out. This routine adapts to the codes in the * file building the "string" table on-the-fly; requiring no table to * be stored in the compressed file. * IN assertions: the buffer inbuf contains already the beginning of * the compressed data, from offsets iptr to insize-1 included. * The magic header has already been checked and skipped. * bytes_in and bytes_out have been initialized. */ local int unlzw(FILE *in, FILE *out) /* input and output file descriptors */ { REG2 char_type *stackp; REG3 code_int code; REG4 int finchar; REG5 code_int oldcode; REG6 code_int incode; REG7 long inbits; REG8 long posbits; REG9 int outpos; /* REG10 int insize; (global) */ REG11 unsigned bitmask; REG12 code_int free_ent; REG13 code_int maxcode; REG14 code_int maxmaxcode; REG15 int n_bits; REG16 int rsize; ofd = out; #ifdef MAXSEG_64K tab_prefix[0] = tab_prefix0; tab_prefix[1] = tab_prefix1; #endif maxbits = get_byte(); block_mode = maxbits & BLOCK_MODE; if ((maxbits & LZW_RESERVED) != 0) { error( "warning, unknown flags in unlzw decompression"); } maxbits &= BIT_MASK; maxmaxcode = MAXCODE(maxbits); if (maxbits > BITS) { error("compressed with too many bits; cannot handle file"); exit_code = ERROR; return ERROR; } rsize = insize; maxcode = MAXCODE(n_bits = INIT_BITS)-1; bitmask = (1<= 0 ; --code) { tab_suffixof(code) = (char_type)code; } do { REG1 int i; int e; int o; resetbuf: e = insize-(o = (posbits>>3)); for (i = 0 ; i < e ; ++i) { inbuf[i] = inbuf[i+o]; } insize = e; posbits = 0; if (insize < INBUF_EXTRA) { /* modified to use fread instead of read - WDP 10/22/97 */ /* if ((rsize = read(in, (char*)inbuf+insize, INBUFSIZ)) == EOF) { */ if ((rsize = fread((char*)inbuf+insize, 1, INBUFSIZ, in)) == EOF) { error("unexpected end of file"); exit_code = ERROR; return ERROR; } insize += rsize; bytes_in += (ulg)rsize; } inbits = ((rsize != 0) ? ((long)insize - insize%n_bits)<<3 : ((long)insize<<3)-(n_bits-1)); while (inbits > posbits) { if (free_ent > maxcode) { posbits = ((posbits-1) + ((n_bits<<3)-(posbits-1+(n_bits<<3))%(n_bits<<3))); ++n_bits; if (n_bits == maxbits) { maxcode = maxmaxcode; } else { maxcode = MAXCODE(n_bits)-1; } bitmask = (1<= 256) { error("corrupt input."); exit_code = ERROR; return ERROR; } outbuf[outpos++] = (char_type)(finchar = (int)(oldcode=code)); continue; } if (code == CLEAR && block_mode) { clear_tab_prefixof(); free_ent = FIRST - 1; posbits = ((posbits-1) + ((n_bits<<3)-(posbits-1+(n_bits<<3))%(n_bits<<3))); maxcode = MAXCODE(n_bits = INIT_BITS)-1; bitmask = (1<= free_ent) { /* Special case for KwKwK string. */ if (code > free_ent) { if (outpos > 0) { write_buf((char*)outbuf, outpos); bytes_out += (ulg)outpos; } error("corrupt input."); exit_code = ERROR; return ERROR; } *--stackp = (char_type)finchar; code = oldcode; } while ((cmp_code_int)code >= (cmp_code_int)256) { /* Generate output characters in reverse order */ *--stackp = tab_suffixof(code); code = tab_prefixof(code); } *--stackp = (char_type)(finchar = tab_suffixof(code)); /* And put them out in forward order */ { /* REG1 int i; already defined above (WDP) */ if (outpos+(i = (de_stack-stackp)) >= OUTBUFSIZ) { do { if (i > OUTBUFSIZ-outpos) i = OUTBUFSIZ-outpos; if (i > 0) { memcpy(outbuf+outpos, stackp, i); outpos += i; } if (outpos >= OUTBUFSIZ) { write_buf((char*)outbuf, outpos); bytes_out += (ulg)outpos; outpos = 0; } stackp+= i; } while ((i = (de_stack-stackp)) > 0); } else { memcpy(outbuf+outpos, stackp, i); outpos += i; } } if ((code = free_ent) < maxmaxcode) { /* Generate the new entry. */ tab_prefixof(code) = (unsigned short)oldcode; tab_suffixof(code) = (char_type)finchar; free_ent = code+1; } oldcode = incode; /* Remember previous code. */ } } while (rsize != 0); if (outpos > 0) { write_buf((char*)outbuf, outpos); bytes_out += (ulg)outpos; } return OK; } /* ========================================================================*/ /* this marks the start of the code from 'util.c' */ local int fill_inbuf(int eof_ok) /* set if EOF acceptable as a result */ { int len; /* Read as much as possible from file */ insize = 0; do { len = fread((char*)inbuf+insize, 1, INBUFSIZ-insize, ifd); if (len == 0 || len == EOF) break; insize += len; } while (insize < INBUFSIZ); if (insize == 0) { if (eof_ok) return EOF; error("unexpected end of file"); exit_code = ERROR; return ERROR; } bytes_in += (ulg)insize; inptr = 1; return inbuf[0]; } /* =========================================================================== */ local void write_buf(voidp buf, unsigned cnt) /* copy buffer into memory; allocate more memory if required*/ { if (!realloc_fn) { /* append buffer to file */ /* added 'unsigned' to get rid of compiler warning (WDP 1/1/99) */ if ((unsigned long) fwrite(buf, 1, cnt, ofd) != cnt) { error ("failed to write buffer to uncompressed output file (write_buf)"); exit_code = ERROR; return; } } else { /* get more memory if current buffer is too small */ if (bytes_out + cnt > *memsize) { *memptr = realloc_fn(*memptr, bytes_out + cnt); *memsize = bytes_out + cnt; /* new memory buffer size */ if (!(*memptr)) { error("malloc failed while uncompressing (write_buf)"); exit_code = ERROR; return; } } /* copy into memory buffer */ memcpy((char *) *memptr + bytes_out, (char *) buf, cnt); } } /* ======================================================================== */ local void error(char *m) /* Error handler */ { ffpmsg(ifname); ffpmsg(m); } healpy-1.8.1/cfitsio/zlib/uncompr.c0000654000175000017530000000367112272000775017653 0ustar zoncaplanck00000000000000/* uncompr.c -- decompress a memory buffer * Copyright (C) 1995-2003, 2010 Jean-loup Gailly. * For conditions of distribution and use, see copyright notice in zlib.h */ #define ZLIB_INTERNAL #include "zlib.h" /* =========================================================================== Decompresses the source buffer into the destination buffer. sourceLen is the byte length of the source buffer. Upon entry, destLen is the total size of the destination buffer, which must be large enough to hold the entire uncompressed data. (The size of the uncompressed data must have been saved previously by the compressor and transmitted to the decompressor by some mechanism outside the scope of this compression library.) Upon exit, destLen is the actual size of the compressed buffer. uncompress returns Z_OK if success, Z_MEM_ERROR if there was not enough memory, Z_BUF_ERROR if there was not enough room in the output buffer, or Z_DATA_ERROR if the input data was corrupted. */ int ZEXPORT uncompress (dest, destLen, source, sourceLen) Bytef *dest; uLongf *destLen; const Bytef *source; uLong sourceLen; { z_stream stream; int err; stream.next_in = (Bytef*)source; stream.avail_in = (uInt)sourceLen; /* Check for source > 64K on 16-bit machine: */ if ((uLong)stream.avail_in != sourceLen) return Z_BUF_ERROR; stream.next_out = dest; stream.avail_out = (uInt)*destLen; if ((uLong)stream.avail_out != *destLen) return Z_BUF_ERROR; stream.zalloc = (alloc_func)0; stream.zfree = (free_func)0; err = inflateInit(&stream); if (err != Z_OK) return err; err = inflate(&stream, Z_FINISH); if (err != Z_STREAM_END) { inflateEnd(&stream); if (err == Z_NEED_DICT || (err == Z_BUF_ERROR && stream.avail_in == 0)) return Z_DATA_ERROR; return err; } *destLen = stream.total_out; err = inflateEnd(&stream); return err; } healpy-1.8.1/cfitsio/zlib/trees.h0000654000175000017530000002043012272000775017307 0ustar zoncaplanck00000000000000/* header created automatically with -DGEN_TREES_H */ local const ct_data static_ltree[L_CODES+2] = { {{ 12},{ 8}}, {{140},{ 8}}, {{ 76},{ 8}}, {{204},{ 8}}, {{ 44},{ 8}}, {{172},{ 8}}, {{108},{ 8}}, {{236},{ 8}}, {{ 28},{ 8}}, {{156},{ 8}}, {{ 92},{ 8}}, {{220},{ 8}}, {{ 60},{ 8}}, {{188},{ 8}}, {{124},{ 8}}, {{252},{ 8}}, {{ 2},{ 8}}, {{130},{ 8}}, {{ 66},{ 8}}, {{194},{ 8}}, {{ 34},{ 8}}, {{162},{ 8}}, {{ 98},{ 8}}, {{226},{ 8}}, {{ 18},{ 8}}, {{146},{ 8}}, {{ 82},{ 8}}, {{210},{ 8}}, {{ 50},{ 8}}, {{178},{ 8}}, {{114},{ 8}}, {{242},{ 8}}, {{ 10},{ 8}}, {{138},{ 8}}, {{ 74},{ 8}}, {{202},{ 8}}, {{ 42},{ 8}}, {{170},{ 8}}, {{106},{ 8}}, {{234},{ 8}}, {{ 26},{ 8}}, {{154},{ 8}}, {{ 90},{ 8}}, {{218},{ 8}}, {{ 58},{ 8}}, {{186},{ 8}}, {{122},{ 8}}, {{250},{ 8}}, {{ 6},{ 8}}, {{134},{ 8}}, {{ 70},{ 8}}, {{198},{ 8}}, {{ 38},{ 8}}, {{166},{ 8}}, {{102},{ 8}}, {{230},{ 8}}, {{ 22},{ 8}}, {{150},{ 8}}, {{ 86},{ 8}}, {{214},{ 8}}, {{ 54},{ 8}}, {{182},{ 8}}, {{118},{ 8}}, {{246},{ 8}}, {{ 14},{ 8}}, {{142},{ 8}}, {{ 78},{ 8}}, {{206},{ 8}}, {{ 46},{ 8}}, {{174},{ 8}}, {{110},{ 8}}, {{238},{ 8}}, {{ 30},{ 8}}, {{158},{ 8}}, {{ 94},{ 8}}, {{222},{ 8}}, {{ 62},{ 8}}, {{190},{ 8}}, {{126},{ 8}}, {{254},{ 8}}, {{ 1},{ 8}}, {{129},{ 8}}, {{ 65},{ 8}}, {{193},{ 8}}, {{ 33},{ 8}}, {{161},{ 8}}, {{ 97},{ 8}}, {{225},{ 8}}, {{ 17},{ 8}}, {{145},{ 8}}, {{ 81},{ 8}}, {{209},{ 8}}, {{ 49},{ 8}}, {{177},{ 8}}, {{113},{ 8}}, {{241},{ 8}}, {{ 9},{ 8}}, {{137},{ 8}}, {{ 73},{ 8}}, {{201},{ 8}}, {{ 41},{ 8}}, {{169},{ 8}}, {{105},{ 8}}, {{233},{ 8}}, {{ 25},{ 8}}, {{153},{ 8}}, {{ 89},{ 8}}, {{217},{ 8}}, {{ 57},{ 8}}, {{185},{ 8}}, {{121},{ 8}}, {{249},{ 8}}, {{ 5},{ 8}}, {{133},{ 8}}, {{ 69},{ 8}}, {{197},{ 8}}, {{ 37},{ 8}}, {{165},{ 8}}, {{101},{ 8}}, {{229},{ 8}}, {{ 21},{ 8}}, {{149},{ 8}}, {{ 85},{ 8}}, {{213},{ 8}}, {{ 53},{ 8}}, {{181},{ 8}}, {{117},{ 8}}, {{245},{ 8}}, {{ 13},{ 8}}, {{141},{ 8}}, {{ 77},{ 8}}, {{205},{ 8}}, {{ 45},{ 8}}, {{173},{ 8}}, {{109},{ 8}}, {{237},{ 8}}, {{ 29},{ 8}}, {{157},{ 8}}, {{ 93},{ 8}}, {{221},{ 8}}, {{ 61},{ 8}}, {{189},{ 8}}, {{125},{ 8}}, {{253},{ 8}}, {{ 19},{ 9}}, {{275},{ 9}}, {{147},{ 9}}, {{403},{ 9}}, {{ 83},{ 9}}, {{339},{ 9}}, {{211},{ 9}}, {{467},{ 9}}, {{ 51},{ 9}}, {{307},{ 9}}, {{179},{ 9}}, {{435},{ 9}}, {{115},{ 9}}, {{371},{ 9}}, {{243},{ 9}}, {{499},{ 9}}, {{ 11},{ 9}}, {{267},{ 9}}, {{139},{ 9}}, {{395},{ 9}}, {{ 75},{ 9}}, {{331},{ 9}}, {{203},{ 9}}, {{459},{ 9}}, {{ 43},{ 9}}, {{299},{ 9}}, {{171},{ 9}}, {{427},{ 9}}, {{107},{ 9}}, {{363},{ 9}}, {{235},{ 9}}, {{491},{ 9}}, {{ 27},{ 9}}, {{283},{ 9}}, {{155},{ 9}}, {{411},{ 9}}, {{ 91},{ 9}}, {{347},{ 9}}, {{219},{ 9}}, {{475},{ 9}}, {{ 59},{ 9}}, {{315},{ 9}}, {{187},{ 9}}, {{443},{ 9}}, {{123},{ 9}}, {{379},{ 9}}, {{251},{ 9}}, {{507},{ 9}}, {{ 7},{ 9}}, {{263},{ 9}}, {{135},{ 9}}, {{391},{ 9}}, {{ 71},{ 9}}, {{327},{ 9}}, {{199},{ 9}}, {{455},{ 9}}, {{ 39},{ 9}}, {{295},{ 9}}, {{167},{ 9}}, {{423},{ 9}}, {{103},{ 9}}, {{359},{ 9}}, {{231},{ 9}}, {{487},{ 9}}, {{ 23},{ 9}}, {{279},{ 9}}, {{151},{ 9}}, {{407},{ 9}}, {{ 87},{ 9}}, {{343},{ 9}}, {{215},{ 9}}, {{471},{ 9}}, {{ 55},{ 9}}, {{311},{ 9}}, {{183},{ 9}}, {{439},{ 9}}, {{119},{ 9}}, {{375},{ 9}}, {{247},{ 9}}, {{503},{ 9}}, {{ 15},{ 9}}, {{271},{ 9}}, {{143},{ 9}}, {{399},{ 9}}, {{ 79},{ 9}}, {{335},{ 9}}, {{207},{ 9}}, {{463},{ 9}}, {{ 47},{ 9}}, {{303},{ 9}}, {{175},{ 9}}, {{431},{ 9}}, {{111},{ 9}}, {{367},{ 9}}, {{239},{ 9}}, {{495},{ 9}}, {{ 31},{ 9}}, {{287},{ 9}}, {{159},{ 9}}, {{415},{ 9}}, {{ 95},{ 9}}, {{351},{ 9}}, {{223},{ 9}}, {{479},{ 9}}, {{ 63},{ 9}}, {{319},{ 9}}, {{191},{ 9}}, {{447},{ 9}}, {{127},{ 9}}, {{383},{ 9}}, {{255},{ 9}}, {{511},{ 9}}, {{ 0},{ 7}}, {{ 64},{ 7}}, {{ 32},{ 7}}, {{ 96},{ 7}}, {{ 16},{ 7}}, {{ 80},{ 7}}, {{ 48},{ 7}}, {{112},{ 7}}, {{ 8},{ 7}}, {{ 72},{ 7}}, {{ 40},{ 7}}, {{104},{ 7}}, {{ 24},{ 7}}, {{ 88},{ 7}}, {{ 56},{ 7}}, {{120},{ 7}}, {{ 4},{ 7}}, {{ 68},{ 7}}, {{ 36},{ 7}}, {{100},{ 7}}, {{ 20},{ 7}}, {{ 84},{ 7}}, {{ 52},{ 7}}, {{116},{ 7}}, {{ 3},{ 8}}, {{131},{ 8}}, {{ 67},{ 8}}, {{195},{ 8}}, {{ 35},{ 8}}, {{163},{ 8}}, {{ 99},{ 8}}, {{227},{ 8}} }; local const ct_data static_dtree[D_CODES] = { {{ 0},{ 5}}, {{16},{ 5}}, {{ 8},{ 5}}, {{24},{ 5}}, {{ 4},{ 5}}, {{20},{ 5}}, {{12},{ 5}}, {{28},{ 5}}, {{ 2},{ 5}}, {{18},{ 5}}, {{10},{ 5}}, {{26},{ 5}}, {{ 6},{ 5}}, {{22},{ 5}}, {{14},{ 5}}, {{30},{ 5}}, {{ 1},{ 5}}, {{17},{ 5}}, {{ 9},{ 5}}, {{25},{ 5}}, {{ 5},{ 5}}, {{21},{ 5}}, {{13},{ 5}}, {{29},{ 5}}, {{ 3},{ 5}}, {{19},{ 5}}, {{11},{ 5}}, {{27},{ 5}}, {{ 7},{ 5}}, {{23},{ 5}} }; const uch ZLIB_INTERNAL _dist_code[DIST_CODE_LEN] = { 0, 1, 2, 3, 4, 4, 5, 5, 6, 6, 6, 6, 7, 7, 7, 7, 8, 8, 8, 8, 8, 8, 8, 8, 9, 9, 9, 9, 9, 9, 9, 9, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 0, 0, 16, 17, 18, 18, 19, 19, 20, 20, 20, 20, 21, 21, 21, 21, 22, 22, 22, 22, 22, 22, 22, 22, 23, 23, 23, 23, 23, 23, 23, 23, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29, 29 }; const uch ZLIB_INTERNAL _length_code[MAX_MATCH-MIN_MATCH+1]= { 0, 1, 2, 3, 4, 5, 6, 7, 8, 8, 9, 9, 10, 10, 11, 11, 12, 12, 12, 12, 13, 13, 13, 13, 14, 14, 14, 14, 15, 15, 15, 15, 16, 16, 16, 16, 16, 16, 16, 16, 17, 17, 17, 17, 17, 17, 17, 17, 18, 18, 18, 18, 18, 18, 18, 18, 19, 19, 19, 19, 19, 19, 19, 19, 20, 20, 20, 20, 20, 20, 20, 20, 20, 20, 20, 20, 20, 20, 20, 20, 21, 21, 21, 21, 21, 21, 21, 21, 21, 21, 21, 21, 21, 21, 21, 21, 22, 22, 22, 22, 22, 22, 22, 22, 22, 22, 22, 22, 22, 22, 22, 22, 23, 23, 23, 23, 23, 23, 23, 23, 23, 23, 23, 23, 23, 23, 23, 23, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 24, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 26, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 27, 28 }; local const int base_length[LENGTH_CODES] = { 0, 1, 2, 3, 4, 5, 6, 7, 8, 10, 12, 14, 16, 20, 24, 28, 32, 40, 48, 56, 64, 80, 96, 112, 128, 160, 192, 224, 0 }; local const int base_dist[D_CODES] = { 0, 1, 2, 3, 4, 6, 8, 12, 16, 24, 32, 48, 64, 96, 128, 192, 256, 384, 512, 768, 1024, 1536, 2048, 3072, 4096, 6144, 8192, 12288, 16384, 24576 }; healpy-1.8.1/cfitsio/sample.tpl0000654000175000017530000000677512272000775017076 0ustar zoncaplanck00000000000000# sample template - create 9 HDUs in one FITS file # syntax : # everything which starts with a hashmark is ignored # the same for empty lines # one can use \include filename to include other files # equal sign after keyword name is optional # \group must be terminated by \end # xtension is terminated by \group, xtension or EOF # First HDU of type image may be defined using "SIMPLE T" # group may contain other groups and xtensions # keywords may be indented, but indentation is limited to max 7chars. # template parser processes all keywords, makes substitutions # when necessary (hashmarks -> index), converts keyword names # to uppercase and writes keywords to file. # For string keywords, parser uses CFITSIO long string routines # to store string values longer than 72 characters. Parser can # read/process lines of any length, as long as there is enough memory. # For a very limited set of keywords (like NAXIS1 for binary tables) # template parser ignores values specified in template file # (one should not specify NAXIS1 for binary tables) and computes and # writes values respective to table structure. # number of rows in binary/ascii tables can be specified with NAXIS2 # if the 1st HDU is not defined with "SIMPLE T" and is defined with # xtension image/asciitable/bintable then dummy primary HDU is # created by parser. simple t bitpix 16 naxis 1 naxis1 10 COMMENT comment sdsdf / keyword without value (null type) if line begins with 8+ spaces everything is a comment xtension image bitpix 16 naxis 1 naxis1 10 QWERW F / dfg dfgsd fg - boolean keyword FFFSDS45 3454345 /integer_or_real keyword SSSDFS34 32345.453 / real keyword adsfd34 (234234.34,2342342.3) / complex keyword - no space between () SDFDF# adfasdfasdfdfcvxccvzxcvcvcxv / autoindexed keyword, here idx=1 SDFD# 'asf dfa dfad df dfad f ad fadfdaf dfdfa df loooooong keyyywoooord - reaaalllly verrrrrrrrrryy loooooooooong' / comment is max 80 chars history history record, spaces (all but 1st) after keyname are copied SDFDF# strg_value_without_spaces / autoindexed keyword, here idx=2 comment comment record, spaces (all but 1st) after keyname are copied strg45 'sdfasdfadfffdfasdfasdfasdf &' continue 'sdfsdfsdfsd fsdf' / 3 spaces must follow CONTINUE keyword xtension image bitpix 16 naxis 1 naxis1 10 \group xtension image bitpix 16 naxis 1 naxis1 10 # create group inside group \group # one can specify additional columns in group HDU. The first column # specified will have index 7 however, since the first 6 columns are occupied # by grouping table itself. # Please note, that it is not allowed to specify EXTNAME keyword as an # additional keyword for group HDU, since parser automatically writes # EXTNAME = GROUPING keyword. TFORM# 13A TTYPE# ADDIT_COL_IN_GRP_HDU TFORM# 1E TTYPE# REAL_COLUMN COMMENT sure, there is always place for comments # the following specifies empty ascii table (0 cols / 0 rows) xtension asciitable \end \end # one do not have to specify all NAXISn keywords. If not specified # NAXISn equals zero. xtension image bitpix 16 naxis 1 # naxis1 10 # the following tells how to set number of rows in binary table # note also that the last line in template file does not have to # have LineFeed character as the last one. xtension bintable naxis2 10 EXTNAME asdjfhsdkf TTYPE# MEMBER_XTENSION TFORM# 8A TTYPE# MEMBER_2 TFORM# 8U TTYPE# MEMBER_3 TFORM# 8V TTYPE# MEMBER_NAME TFORM# 32A TDIM# '(8,4)' TTYPE# MEMBER_VERSION TFORM# 1J TNULL# 0healpy-1.8.1/cfitsio/iter_b.c0000654000175000017530000000716612272000775016477 0ustar zoncaplanck00000000000000#include #include #include #include "fitsio.h" /* This program illustrates how to use the CFITSIO iterator function. It simply prints out the values in a character string and a logical type column in a table, and toggles the value in the logical column so that T -> F and F -> T. */ main() { extern str_iter(); /* external work function is passed to the iterator */ fitsfile *fptr; iteratorCol cols[2]; int n_cols; long rows_per_loop, offset; int status = 0; char filename[] = "iter_b.fit"; /* name of rate FITS file */ /* open the file and move to the correct extension */ fits_open_file(&fptr, filename, READWRITE, &status); fits_movnam_hdu(fptr, BINARY_TBL, "iter_test", 0, &status); /* define input column structure members for the iterator function */ n_cols = 2; /* number of columns */ /* define input column structure members for the iterator function */ fits_iter_set_by_name(&cols[0], fptr, "Avalue", TSTRING, InputOutputCol); fits_iter_set_by_name(&cols[1], fptr, "Lvalue", TLOGICAL, InputOutputCol); rows_per_loop = 0; /* use default optimum number of rows */ offset = 0; /* process all the rows */ /* apply the function to each row of the table */ printf("Calling iterator function...%d\n", status); fits_iterate_data(n_cols, cols, offset, rows_per_loop, str_iter, 0L, &status); fits_close_file(fptr, &status); /* all done */ if (status) fits_report_error(stderr, status); /* print out error messages */ return(status); } /*--------------------------------------------------------------------------*/ int str_iter(long totalrows, long offset, long firstrow, long nrows, int ncols, iteratorCol *cols, void *user_strct ) /* Sample iterator function. */ { int ii; /* declare variables static to preserve their values between calls */ static char **stringvals; static char *logicalvals; /*--------------------------------------------------------*/ /* Initialization procedures: execute on the first call */ /*--------------------------------------------------------*/ if (firstrow == 1) { if (ncols != 2) return(-1); /* number of columns incorrect */ if (fits_iter_get_datatype(&cols[0]) != TSTRING || fits_iter_get_datatype(&cols[1]) != TLOGICAL ) return(-2); /* bad data type */ /* assign the input pointers to the appropriate arrays */ stringvals = (char **) fits_iter_get_array(&cols[0]); logicalvals = (char *) fits_iter_get_array(&cols[1]); printf("Total rows, No. rows = %d %d\n",totalrows, nrows); } /*------------------------------------------*/ /* Main loop: process all the rows of data */ /*------------------------------------------*/ /* NOTE: 1st element of array is the null pixel value! */ /* Loop from 1 to nrows, not 0 to nrows - 1. */ for (ii = 1; ii <= nrows; ii++) { printf("%s %d\n", stringvals[ii], logicalvals[ii]); if (logicalvals[ii]) { logicalvals[ii] = FALSE; strcpy(stringvals[ii], "changed to false"); } else { logicalvals[ii] = TRUE; strcpy(stringvals[ii], "changed to true"); } } /*-------------------------------------------------------*/ /* Clean up procedures: after processing all the rows */ /*-------------------------------------------------------*/ if (firstrow + nrows - 1 == totalrows) { /* no action required in this case */ } return(0); } healpy-1.8.1/cfitsio/histo.c0000654000175000017530000022162312272000775016355 0ustar zoncaplanck00000000000000/* Globally defined histogram parameters */ #include #include #include #include #include "fitsio2.h" typedef struct { /* Structure holding all the histogramming information */ union { /* the iterator work functions (ffwritehist, ffcalchist) */ char *b; /* need to do their job... passed via *userPointer. */ short *i; int *j; float *r; double *d; } hist; fitsfile *tblptr; int haxis, hcolnum[4], himagetype; long haxis1, haxis2, haxis3, haxis4; float amin1, amin2, amin3, amin4; float maxbin1, maxbin2, maxbin3, maxbin4; float binsize1, binsize2, binsize3, binsize4; int wtrecip, wtcolnum; float weight; char *rowselector; } histType; /*--------------------------------------------------------------------------*/ int ffbins(char *binspec, /* I - binning specification */ int *imagetype, /* O - image type, TINT or TSHORT */ int *histaxis, /* O - no. of axes in the histogram */ char colname[4][FLEN_VALUE], /* column name for axis */ double *minin, /* minimum value for each axis */ double *maxin, /* maximum value for each axis */ double *binsizein, /* size of bins on each axis */ char minname[4][FLEN_VALUE], /* keyword name for min */ char maxname[4][FLEN_VALUE], /* keyword name for max */ char binname[4][FLEN_VALUE], /* keyword name for binsize */ double *wt, /* weighting factor */ char *wtname, /* keyword or column name for weight */ int *recip, /* the reciprocal of the weight? */ int *status) { /* Parse the input binning specification string, returning the binning parameters. Supports up to 4 dimensions. The binspec string has one of these forms: bin binsize - 2D histogram with binsize on each axis bin xcol - 1D histogram on column xcol bin (xcol, ycol) = binsize - 2D histogram with binsize on each axis bin x=min:max:size, y=min:max:size, z..., t... bin x=:max, y=::size bin x=size, y=min::size most other reasonable combinations are supported. */ int ii, slen, defaulttype; char *ptr, tmpname[30], *file_expr = NULL; double dummy; if (*status > 0) return(*status); /* set the default values */ *histaxis = 2; *imagetype = TINT; defaulttype = 1; *wt = 1.; *recip = 0; *wtname = '\0'; /* set default values */ for (ii = 0; ii < 4; ii++) { *colname[ii] = '\0'; *minname[ii] = '\0'; *maxname[ii] = '\0'; *binname[ii] = '\0'; minin[ii] = DOUBLENULLVALUE; /* undefined values */ maxin[ii] = DOUBLENULLVALUE; binsizein[ii] = DOUBLENULLVALUE; } ptr = binspec + 3; /* skip over 'bin' */ if (*ptr == 'i' ) /* bini */ { *imagetype = TSHORT; defaulttype = 0; ptr++; } else if (*ptr == 'j' ) /* binj; same as default */ { defaulttype = 0; ptr ++; } else if (*ptr == 'r' ) /* binr */ { *imagetype = TFLOAT; defaulttype = 0; ptr ++; } else if (*ptr == 'd' ) /* bind */ { *imagetype = TDOUBLE; defaulttype = 0; ptr ++; } else if (*ptr == 'b' ) /* binb */ { *imagetype = TBYTE; defaulttype = 0; ptr ++; } if (*ptr == '\0') /* use all defaults for other parameters */ return(*status); else if (*ptr != ' ') /* must be at least one blank */ { ffpmsg("binning specification syntax error:"); ffpmsg(binspec); return(*status = URL_PARSE_ERROR); } while (*ptr == ' ') /* skip over blanks */ ptr++; if (*ptr == '\0') /* no other parameters; use defaults */ return(*status); /* Check if need to import expression from a file */ if( *ptr=='@' ) { if( ffimport_file( ptr+1, &file_expr, status ) ) return(*status); ptr = file_expr; while (*ptr == ' ') ptr++; /* skip leading white space... again */ } if (*ptr == '(' ) { /* this must be the opening parenthesis around a list of column */ /* names, optionally followed by a '=' and the binning spec. */ for (ii = 0; ii < 4; ii++) { ptr++; /* skip over the '(', ',', or ' ') */ while (*ptr == ' ') /* skip over blanks */ ptr++; slen = strcspn(ptr, " ,)"); strncat(colname[ii], ptr, slen); /* copy 1st column name */ ptr += slen; while (*ptr == ' ') /* skip over blanks */ ptr++; if (*ptr == ')' ) /* end of the list of names */ { *histaxis = ii + 1; break; } } if (ii == 4) /* too many names in the list , or missing ')' */ { ffpmsg( "binning specification has too many column names or is missing closing ')':"); ffpmsg(binspec); if( file_expr ) free( file_expr ); return(*status = URL_PARSE_ERROR); } ptr++; /* skip over the closing parenthesis */ while (*ptr == ' ') /* skip over blanks */ ptr++; if (*ptr == '\0') { if( file_expr ) free( file_expr ); return(*status); /* parsed the entire string */ } else if (*ptr != '=') /* must be an equals sign now*/ { ffpmsg("illegal binning specification in URL:"); ffpmsg(" an equals sign '=' must follow the column names"); ffpmsg(binspec); if( file_expr ) free( file_expr ); return(*status = URL_PARSE_ERROR); } ptr++; /* skip over the equals sign */ while (*ptr == ' ') /* skip over blanks */ ptr++; /* get the single range specification for all the columns */ ffbinr(&ptr, tmpname, minin, maxin, binsizein, minname[0], maxname[0], binname[0], status); if (*status > 0) { ffpmsg("illegal binning specification in URL:"); ffpmsg(binspec); if( file_expr ) free( file_expr ); return(*status); } for (ii = 1; ii < *histaxis; ii++) { minin[ii] = minin[0]; maxin[ii] = maxin[0]; binsizein[ii] = binsizein[0]; strcpy(minname[ii], minname[0]); strcpy(maxname[ii], maxname[0]); strcpy(binname[ii], binname[0]); } while (*ptr == ' ') /* skip over blanks */ ptr++; if (*ptr == ';') goto getweight; /* a weighting factor is specified */ if (*ptr != '\0') /* must have reached end of string */ { ffpmsg("illegal syntax after binning range specification in URL:"); ffpmsg(binspec); if( file_expr ) free( file_expr ); return(*status = URL_PARSE_ERROR); } return(*status); } /* end of case with list of column names in ( ) */ /* if we've reached this point, then the binning specification */ /* must be of the form: XCOL = min:max:binsize, YCOL = ... */ /* where the column name followed by '=' are optional. */ /* If the column name is not specified, then use the default name */ for (ii = 0; ii < 4; ii++) /* allow up to 4 histogram dimensions */ { ffbinr(&ptr, colname[ii], &minin[ii], &maxin[ii], &binsizein[ii], minname[ii], maxname[ii], binname[ii], status); if (*status > 0) { ffpmsg("illegal syntax in binning range specification in URL:"); ffpmsg(binspec); if( file_expr ) free( file_expr ); return(*status); } if (*ptr == '\0' || *ptr == ';') break; /* reached the end of the string */ if (*ptr == ' ') { while (*ptr == ' ') /* skip over blanks */ ptr++; if (*ptr == '\0' || *ptr == ';') break; /* reached the end of the string */ if (*ptr == ',') ptr++; /* comma separates the next column specification */ } else if (*ptr == ',') { ptr++; /* comma separates the next column specification */ } else { ffpmsg("illegal characters following binning specification in URL:"); ffpmsg(binspec); if( file_expr ) free( file_expr ); return(*status = URL_PARSE_ERROR); } } if (ii == 4) { /* there are yet more characters in the string */ ffpmsg("illegal binning specification in URL:"); ffpmsg("apparently greater than 4 histogram dimensions"); ffpmsg(binspec); return(*status = URL_PARSE_ERROR); } else *histaxis = ii + 1; /* special case: if a single number was entered it should be */ /* interpreted as the binning factor for the default X and Y axes */ if (*histaxis == 1 && *colname[0] == '\0' && minin[0] == DOUBLENULLVALUE && maxin[0] == DOUBLENULLVALUE) { *histaxis = 2; binsizein[1] = binsizein[0]; } getweight: if (*ptr == ';') /* looks like a weighting factor is given */ { ptr++; while (*ptr == ' ') /* skip over blanks */ ptr++; recip = 0; if (*ptr == '/') { *recip = 1; /* the reciprocal of the weight is entered */ ptr++; while (*ptr == ' ') /* skip over blanks */ ptr++; } /* parse the weight as though it were a binrange. */ /* either a column name or a numerical value will be returned */ ffbinr(&ptr, wtname, &dummy, &dummy, wt, tmpname, tmpname, tmpname, status); if (*status > 0) { ffpmsg("illegal binning weight specification in URL:"); ffpmsg(binspec); if( file_expr ) free( file_expr ); return(*status); } /* creat a float datatype histogram by default, if weight */ /* factor is not = 1.0 */ if ( (defaulttype && *wt != 1.0) || (defaulttype && *wtname) ) *imagetype = TFLOAT; } while (*ptr == ' ') /* skip over blanks */ ptr++; if (*ptr != '\0') /* should have reached the end of string */ { ffpmsg("illegal syntax after binning weight specification in URL:"); ffpmsg(binspec); *status = URL_PARSE_ERROR; } if( file_expr ) free( file_expr ); return(*status); } /*--------------------------------------------------------------------------*/ int ffbinr(char **ptr, char *colname, double *minin, double *maxin, double *binsizein, char *minname, char *maxname, char *binname, int *status) /* Parse the input binning range specification string, returning the column name, histogram min and max values, and bin size. */ { int slen, isanumber; char token[FLEN_VALUE]; if (*status > 0) return(*status); slen = fits_get_token(ptr, " ,=:;", token, &isanumber); /* get 1st token */ if (slen == 0 && (**ptr == '\0' || **ptr == ',' || **ptr == ';') ) return(*status); /* a null range string */ if (!isanumber && **ptr != ':') { /* this looks like the column name */ if (token[0] == '#' && isdigit((int) token[1]) ) { /* omit the leading '#' in the column number */ strcpy(colname, token+1); } else strcpy(colname, token); while (**ptr == ' ') /* skip over blanks */ (*ptr)++; if (**ptr != '=') return(*status); /* reached the end */ (*ptr)++; /* skip over the = sign */ while (**ptr == ' ') /* skip over blanks */ (*ptr)++; slen = fits_get_token(ptr, " ,:;", token, &isanumber); /* get token */ } if (**ptr != ':') { /* this is the first token, and since it is not followed by */ /* a ':' this must be the binsize token */ if (!isanumber) strcpy(binname, token); else *binsizein = strtod(token, NULL); return(*status); /* reached the end */ } else { /* the token contains the min value */ if (slen) { if (!isanumber) strcpy(minname, token); else *minin = strtod(token, NULL); } } (*ptr)++; /* skip the colon between the min and max values */ slen = fits_get_token(ptr, " ,:;", token, &isanumber); /* get token */ /* the token contains the max value */ if (slen) { if (!isanumber) strcpy(maxname, token); else *maxin = strtod(token, NULL); } if (**ptr != ':') return(*status); /* reached the end; no binsize token */ (*ptr)++; /* skip the colon between the max and binsize values */ slen = fits_get_token(ptr, " ,:;", token, &isanumber); /* get token */ /* the token contains the binsize value */ if (slen) { if (!isanumber) strcpy(binname, token); else *binsizein = strtod(token, NULL); } return(*status); } /*--------------------------------------------------------------------------*/ int ffhist2(fitsfile **fptr, /* IO - pointer to table with X and Y cols; */ /* on output, points to histogram image */ char *outfile, /* I - name for the output histogram file */ int imagetype, /* I - datatype for image: TINT, TSHORT, etc */ int naxis, /* I - number of axes in the histogram image */ char colname[4][FLEN_VALUE], /* I - column names */ double *minin, /* I - minimum histogram value, for each axis */ double *maxin, /* I - maximum histogram value, for each axis */ double *binsizein, /* I - bin size along each axis */ char minname[4][FLEN_VALUE], /* I - optional keywords for min */ char maxname[4][FLEN_VALUE], /* I - optional keywords for max */ char binname[4][FLEN_VALUE], /* I - optional keywords for binsize */ double weightin, /* I - binning weighting factor */ char wtcol[FLEN_VALUE], /* I - optional keyword or col for weight*/ int recip, /* I - use reciprocal of the weight? */ char *selectrow, /* I - optional array (length = no. of */ /* rows in the table). If the element is true */ /* then the corresponding row of the table will*/ /* be included in the histogram, otherwise the */ /* row will be skipped. Ingnored if *selectrow*/ /* is equal to NULL. */ int *status) { fitsfile *histptr; int bitpix, colnum[4], wtcolnum; long haxes[4]; float amin[4], amax[4], binsize[4], weight; if (*status > 0) return(*status); if (naxis > 4) { ffpmsg("histogram has more than 4 dimensions"); return(*status = BAD_DIMEN); } /* reset position to the correct HDU if necessary */ if ((*fptr)->HDUposition != ((*fptr)->Fptr)->curhdu) ffmahd(*fptr, ((*fptr)->HDUposition) + 1, NULL, status); if (imagetype == TBYTE) bitpix = BYTE_IMG; else if (imagetype == TSHORT) bitpix = SHORT_IMG; else if (imagetype == TINT) bitpix = LONG_IMG; else if (imagetype == TFLOAT) bitpix = FLOAT_IMG; else if (imagetype == TDOUBLE) bitpix = DOUBLE_IMG; else return(*status = BAD_DATATYPE); /* Calculate the binning parameters: */ /* columm numbers, axes length, min values, max values, and binsizes. */ if (fits_calc_binning( *fptr, naxis, colname, minin, maxin, binsizein, minname, maxname, binname, colnum, haxes, amin, amax, binsize, status) > 0) { ffpmsg("failed to determine binning parameters"); return(*status); } /* get the histogramming weighting factor, if any */ if (*wtcol) { /* first, look for a keyword with the weight value */ if (ffgky(*fptr, TFLOAT, wtcol, &weight, NULL, status) ) { /* not a keyword, so look for column with this name */ *status = 0; /* get the column number in the table */ if (ffgcno(*fptr, CASEINSEN, wtcol, &wtcolnum, status) > 0) { ffpmsg( "keyword or column for histogram weights doesn't exist: "); ffpmsg(wtcol); return(*status); } weight = FLOATNULLVALUE; } } else weight = (float) weightin; if (weight <= 0. && weight != FLOATNULLVALUE) { ffpmsg("Illegal histogramming weighting factor <= 0."); return(*status = URL_PARSE_ERROR); } if (recip && weight != FLOATNULLVALUE) /* take reciprocal of weight */ weight = (float) (1.0 / weight); /* size of histogram is now known, so create temp output file */ if (fits_create_file(&histptr, outfile, status) > 0) { ffpmsg("failed to create temp output file for histogram"); return(*status); } /* create output FITS image HDU */ if (ffcrim(histptr, bitpix, naxis, haxes, status) > 0) { ffpmsg("failed to create output histogram FITS image"); return(*status); } /* copy header keywords, converting pixel list WCS keywords to image WCS form */ if (fits_copy_pixlist2image(*fptr, histptr, 9, naxis, colnum, status) > 0) { ffpmsg("failed to copy pixel list keywords to new histogram header"); return(*status); } /* if the table columns have no WCS keywords, then write default keywords */ fits_write_keys_histo(*fptr, histptr, naxis, colnum, status); /* update the WCS keywords for the ref. pixel location, and pixel size */ fits_rebin_wcs(histptr, naxis, amin, binsize, status); /* now compute the output image by binning the column values */ if (fits_make_hist(*fptr, histptr, bitpix, naxis, haxes, colnum, amin, amax, binsize, weight, wtcolnum, recip, selectrow, status) > 0) { ffpmsg("failed to calculate new histogram values"); return(*status); } /* finally, close the original file and return ptr to the new image */ ffclos(*fptr, status); *fptr = histptr; return(*status); } /*--------------------------------------------------------------------------*/ int ffhist(fitsfile **fptr, /* IO - pointer to table with X and Y cols; */ /* on output, points to histogram image */ char *outfile, /* I - name for the output histogram file */ int imagetype, /* I - datatype for image: TINT, TSHORT, etc */ int naxis, /* I - number of axes in the histogram image */ char colname[4][FLEN_VALUE], /* I - column names */ double *minin, /* I - minimum histogram value, for each axis */ double *maxin, /* I - maximum histogram value, for each axis */ double *binsizein, /* I - bin size along each axis */ char minname[4][FLEN_VALUE], /* I - optional keywords for min */ char maxname[4][FLEN_VALUE], /* I - optional keywords for max */ char binname[4][FLEN_VALUE], /* I - optional keywords for binsize */ double weightin, /* I - binning weighting factor */ char wtcol[FLEN_VALUE], /* I - optional keyword or col for weight*/ int recip, /* I - use reciprocal of the weight? */ char *selectrow, /* I - optional array (length = no. of */ /* rows in the table). If the element is true */ /* then the corresponding row of the table will*/ /* be included in the histogram, otherwise the */ /* row will be skipped. Ingnored if *selectrow*/ /* is equal to NULL. */ int *status) { int ii, datatype, repeat, imin, imax, ibin, bitpix, tstatus, use_datamax = 0; long haxes[4]; fitsfile *histptr; char errmsg[FLEN_ERRMSG], keyname[FLEN_KEYWORD], card[FLEN_CARD]; tcolumn *colptr; iteratorCol imagepars[1]; int n_cols = 1, nkeys; long offset = 0; long n_per_loop = -1; /* force whole array to be passed at one time */ histType histData; /* Structure holding histogram info for iterator */ float amin[4], amax[4], binsize[4], maxbin[4]; float datamin = FLOATNULLVALUE, datamax = FLOATNULLVALUE; char svalue[FLEN_VALUE]; double dvalue; char cpref[4][FLEN_VALUE]; char *cptr; if (*status > 0) return(*status); if (naxis > 4) { ffpmsg("histogram has more than 4 dimensions"); return(*status = BAD_DIMEN); } /* reset position to the correct HDU if necessary */ if ((*fptr)->HDUposition != ((*fptr)->Fptr)->curhdu) ffmahd(*fptr, ((*fptr)->HDUposition) + 1, NULL, status); histData.tblptr = *fptr; histData.himagetype = imagetype; histData.haxis = naxis; histData.rowselector = selectrow; if (imagetype == TBYTE) bitpix = BYTE_IMG; else if (imagetype == TSHORT) bitpix = SHORT_IMG; else if (imagetype == TINT) bitpix = LONG_IMG; else if (imagetype == TFLOAT) bitpix = FLOAT_IMG; else if (imagetype == TDOUBLE) bitpix = DOUBLE_IMG; else return(*status = BAD_DATATYPE); /* The CPREF keyword, if it exists, gives the preferred columns. */ /* Otherwise, assume "X", "Y", "Z", and "T" */ tstatus = 0; ffgky(*fptr, TSTRING, "CPREF", cpref[0], NULL, &tstatus); if (!tstatus) { /* Preferred column names are given; separate them */ cptr = cpref[0]; /* the first preferred axis... */ while (*cptr != ',' && *cptr != '\0') cptr++; if (*cptr != '\0') { *cptr = '\0'; cptr++; while (*cptr == ' ') cptr++; strcpy(cpref[1], cptr); cptr = cpref[1]; /* the second preferred axis... */ while (*cptr != ',' && *cptr != '\0') cptr++; if (*cptr != '\0') { *cptr = '\0'; cptr++; while (*cptr == ' ') cptr++; strcpy(cpref[2], cptr); cptr = cpref[2]; /* the third preferred axis... */ while (*cptr != ',' && *cptr != '\0') cptr++; if (*cptr != '\0') { *cptr = '\0'; cptr++; while (*cptr == ' ') cptr++; strcpy(cpref[3], cptr); } } } } for (ii = 0; ii < naxis; ii++) { /* get the min, max, and binsize values from keywords, if specified */ if (*minname[ii]) { if (ffgky(*fptr, TDOUBLE, minname[ii], &minin[ii], NULL, status) ) { ffpmsg("error reading histogramming minimum keyword"); ffpmsg(minname[ii]); return(*status); } } if (*maxname[ii]) { if (ffgky(*fptr, TDOUBLE, maxname[ii], &maxin[ii], NULL, status) ) { ffpmsg("error reading histogramming maximum keyword"); ffpmsg(maxname[ii]); return(*status); } } if (*binname[ii]) { if (ffgky(*fptr, TDOUBLE, binname[ii], &binsizein[ii], NULL, status) ) { ffpmsg("error reading histogramming binsize keyword"); ffpmsg(binname[ii]); return(*status); } } if (binsizein[ii] == 0.) { ffpmsg("error: histogram binsize = 0"); return(*status = ZERO_SCALE); } if (*colname[ii] == '\0') { strcpy(colname[ii], cpref[ii]); /* try using the preferred column */ if (*colname[ii] == '\0') { if (ii == 0) strcpy(colname[ii], "X"); else if (ii == 1) strcpy(colname[ii], "Y"); else if (ii == 2) strcpy(colname[ii], "Z"); else if (ii == 3) strcpy(colname[ii], "T"); } } /* get the column number in the table */ if (ffgcno(*fptr, CASEINSEN, colname[ii], histData.hcolnum+ii, status) > 0) { strcpy(errmsg, "column for histogram axis doesn't exist: "); strcat(errmsg, colname[ii]); ffpmsg(errmsg); return(*status); } colptr = ((*fptr)->Fptr)->tableptr; colptr += (histData.hcolnum[ii] - 1); repeat = (int) colptr->trepeat; /* vector repeat factor of the column */ if (repeat > 1) { strcpy(errmsg, "Can't bin a vector column: "); strcat(errmsg, colname[ii]); ffpmsg(errmsg); return(*status = BAD_DATATYPE); } /* get the datatype of the column */ fits_get_coltype(*fptr, histData.hcolnum[ii], &datatype, NULL, NULL, status); if (datatype < 0 || datatype == TSTRING) { strcpy(errmsg, "Inappropriate datatype; can't bin this column: "); strcat(errmsg, colname[ii]); ffpmsg(errmsg); return(*status = BAD_DATATYPE); } /* use TLMINn and TLMAXn keyword values if min and max were not given */ /* else use actual data min and max if TLMINn and TLMAXn don't exist */ if (minin[ii] == DOUBLENULLVALUE) { ffkeyn("TLMIN", histData.hcolnum[ii], keyname, status); if (ffgky(*fptr, TFLOAT, keyname, amin+ii, NULL, status) > 0) { /* use actual data minimum value for the histogram minimum */ *status = 0; if (fits_get_col_minmax(*fptr, histData.hcolnum[ii], amin+ii, &datamax, status) > 0) { strcpy(errmsg, "Error calculating datamin and datamax for column: "); strcat(errmsg, colname[ii]); ffpmsg(errmsg); return(*status); } } } else { amin[ii] = (float) minin[ii]; } if (maxin[ii] == DOUBLENULLVALUE) { ffkeyn("TLMAX", histData.hcolnum[ii], keyname, status); if (ffgky(*fptr, TFLOAT, keyname, &amax[ii], NULL, status) > 0) { *status = 0; if(datamax != FLOATNULLVALUE) /* already computed max value */ { amax[ii] = datamax; } else { /* use actual data maximum value for the histogram maximum */ if (fits_get_col_minmax(*fptr, histData.hcolnum[ii], &datamin, &amax[ii], status) > 0) { strcpy(errmsg, "Error calculating datamin and datamax for column: "); strcat(errmsg, colname[ii]); ffpmsg(errmsg); return(*status); } } } use_datamax = 1; /* flag that the max was determined by the data values */ /* and not specifically set by the calling program */ } else { amax[ii] = (float) maxin[ii]; } /* use TDBINn keyword or else 1 if bin size is not given */ if (binsizein[ii] == DOUBLENULLVALUE) { tstatus = 0; ffkeyn("TDBIN", histData.hcolnum[ii], keyname, &tstatus); if (ffgky(*fptr, TDOUBLE, keyname, binsizein + ii, NULL, &tstatus) > 0) { /* make at least 10 bins */ binsizein[ii] = (amax[ii] - amin[ii]) / 10. ; if (binsizein[ii] > 1.) binsizein[ii] = 1.; /* use default bin size */ } } if ( (amin[ii] > amax[ii] && binsizein[ii] > 0. ) || (amin[ii] < amax[ii] && binsizein[ii] < 0. ) ) binsize[ii] = (float) -binsizein[ii]; /* reverse the sign of binsize */ else binsize[ii] = (float) binsizein[ii]; /* binsize has the correct sign */ ibin = (int) binsize[ii]; imin = (int) amin[ii]; imax = (int) amax[ii]; /* Determine the range and number of bins in the histogram. This */ /* depends on whether the input columns are integer or floats, so */ /* treat each case separately. */ if (datatype <= TLONG && (float) imin == amin[ii] && (float) imax == amax[ii] && (float) ibin == binsize[ii] ) { /* This is an integer column and integer limits were entered. */ /* Shift the lower and upper histogramming limits by 0.5, so that */ /* the values fall in the center of the bin, not on the edge. */ haxes[ii] = (imax - imin) / ibin + 1; /* last bin may only */ /* be partially full */ maxbin[ii] = (float) (haxes[ii] + 1.); /* add 1. instead of .5 to avoid roundoff */ if (amin[ii] < amax[ii]) { amin[ii] = (float) (amin[ii] - 0.5); amax[ii] = (float) (amax[ii] + 0.5); } else { amin[ii] = (float) (amin[ii] + 0.5); amax[ii] = (float) (amax[ii] - 0.5); } } else if (use_datamax) { /* Either the column datatype and/or the limits are floating point, */ /* and the histogram limits are being defined by the min and max */ /* values of the array. Add 1 to the number of histogram bins to */ /* make sure that pixels that are equal to the maximum or are */ /* in the last partial bin are included. */ maxbin[ii] = (amax[ii] - amin[ii]) / binsize[ii]; haxes[ii] = (long) (maxbin[ii] + 1); } else { /* float datatype column and/or limits, and the maximum value to */ /* include in the histogram is specified by the calling program. */ /* The lower limit is inclusive, but upper limit is exclusive */ maxbin[ii] = (amax[ii] - amin[ii]) / binsize[ii]; haxes[ii] = (long) maxbin[ii]; if (amin[ii] < amax[ii]) { if (amin[ii] + (haxes[ii] * binsize[ii]) < amax[ii]) haxes[ii]++; /* need to include another partial bin */ } else { if (amin[ii] + (haxes[ii] * binsize[ii]) > amax[ii]) haxes[ii]++; /* need to include another partial bin */ } } } /* get the histogramming weighting factor */ if (*wtcol) { /* first, look for a keyword with the weight value */ if (ffgky(*fptr, TFLOAT, wtcol, &histData.weight, NULL, status) ) { /* not a keyword, so look for column with this name */ *status = 0; /* get the column number in the table */ if (ffgcno(*fptr, CASEINSEN, wtcol, &histData.wtcolnum, status) > 0) { ffpmsg( "keyword or column for histogram weights doesn't exist: "); ffpmsg(wtcol); return(*status); } histData.weight = FLOATNULLVALUE; } } else histData.weight = (float) weightin; if (histData.weight <= 0. && histData.weight != FLOATNULLVALUE) { ffpmsg("Illegal histogramming weighting factor <= 0."); return(*status = URL_PARSE_ERROR); } if (recip && histData.weight != FLOATNULLVALUE) /* take reciprocal of weight */ histData.weight = (float) (1.0 / histData.weight); histData.wtrecip = recip; /* size of histogram is now known, so create temp output file */ if (ffinit(&histptr, outfile, status) > 0) { ffpmsg("failed to create temp output file for histogram"); return(*status); } if (ffcrim(histptr, bitpix, histData.haxis, haxes, status) > 0) { ffpmsg("failed to create primary array histogram in temp file"); ffclos(histptr, status); return(*status); } /* copy all non-structural keywords from the table to the image */ fits_get_hdrspace(*fptr, &nkeys, NULL, status); for (ii = 1; ii <= nkeys; ii++) { fits_read_record(*fptr, ii, card, status); if (fits_get_keyclass(card) >= 120) fits_write_record(histptr, card, status); } /* Set global variables with histogram parameter values. */ /* Use separate scalar variables rather than arrays because */ /* it is more efficient when computing the histogram. */ histData.amin1 = amin[0]; histData.maxbin1 = maxbin[0]; histData.binsize1 = binsize[0]; histData.haxis1 = haxes[0]; if (histData.haxis > 1) { histData.amin2 = amin[1]; histData.maxbin2 = maxbin[1]; histData.binsize2 = binsize[1]; histData.haxis2 = haxes[1]; if (histData.haxis > 2) { histData.amin3 = amin[2]; histData.maxbin3 = maxbin[2]; histData.binsize3 = binsize[2]; histData.haxis3 = haxes[2]; if (histData.haxis > 3) { histData.amin4 = amin[3]; histData.maxbin4 = maxbin[3]; histData.binsize4 = binsize[3]; histData.haxis4 = haxes[3]; } } } /* define parameters of image for the iterator function */ fits_iter_set_file(imagepars, histptr); /* pointer to image */ fits_iter_set_datatype(imagepars, imagetype); /* image datatype */ fits_iter_set_iotype(imagepars, OutputCol); /* image is output */ /* call the iterator function to write out the histogram image */ if (fits_iterate_data(n_cols, imagepars, offset, n_per_loop, ffwritehisto, (void*)&histData, status) ) return(*status); /* write the World Coordinate System (WCS) keywords */ /* create default values if WCS keywords are not present in the table */ for (ii = 0; ii < histData.haxis; ii++) { /* CTYPEn */ tstatus = 0; ffkeyn("TCTYP", histData.hcolnum[ii], keyname, &tstatus); ffgky(*fptr, TSTRING, keyname, svalue, NULL, &tstatus); if (tstatus) { /* just use column name as the type */ tstatus = 0; ffkeyn("TTYPE", histData.hcolnum[ii], keyname, &tstatus); ffgky(*fptr, TSTRING, keyname, svalue, NULL, &tstatus); } if (!tstatus) { ffkeyn("CTYPE", ii + 1, keyname, &tstatus); ffpky(histptr, TSTRING, keyname, svalue, "Coordinate Type", &tstatus); } else tstatus = 0; /* CUNITn */ ffkeyn("TCUNI", histData.hcolnum[ii], keyname, &tstatus); ffgky(*fptr, TSTRING, keyname, svalue, NULL, &tstatus); if (tstatus) { /* use the column units */ tstatus = 0; ffkeyn("TUNIT", histData.hcolnum[ii], keyname, &tstatus); ffgky(*fptr, TSTRING, keyname, svalue, NULL, &tstatus); } if (!tstatus) { ffkeyn("CUNIT", ii + 1, keyname, &tstatus); ffpky(histptr, TSTRING, keyname, svalue, "Coordinate Units", &tstatus); } else tstatus = 0; /* CRPIXn - Reference Pixel */ ffkeyn("TCRPX", histData.hcolnum[ii], keyname, &tstatus); ffgky(*fptr, TDOUBLE, keyname, &dvalue, NULL, &tstatus); if (tstatus) { dvalue = 1.0; /* choose first pixel in new image as ref. pix. */ tstatus = 0; } else { /* calculate locate of the ref. pix. in the new image */ dvalue = (dvalue - amin[ii]) / binsize[ii] + .5; } ffkeyn("CRPIX", ii + 1, keyname, &tstatus); ffpky(histptr, TDOUBLE, keyname, &dvalue, "Reference Pixel", &tstatus); /* CRVALn - Value at the location of the reference pixel */ ffkeyn("TCRVL", histData.hcolnum[ii], keyname, &tstatus); ffgky(*fptr, TDOUBLE, keyname, &dvalue, NULL, &tstatus); if (tstatus) { /* calculate value at ref. pix. location (at center of 1st pixel) */ dvalue = amin[ii] + binsize[ii]/2.; tstatus = 0; } ffkeyn("CRVAL", ii + 1, keyname, &tstatus); ffpky(histptr, TDOUBLE, keyname, &dvalue, "Reference Value", &tstatus); /* CDELTn - unit size of pixels */ ffkeyn("TCDLT", histData.hcolnum[ii], keyname, &tstatus); ffgky(*fptr, TDOUBLE, keyname, &dvalue, NULL, &tstatus); if (tstatus) { dvalue = 1.0; /* use default pixel size */ tstatus = 0; } dvalue = dvalue * binsize[ii]; ffkeyn("CDELT", ii + 1, keyname, &tstatus); ffpky(histptr, TDOUBLE, keyname, &dvalue, "Pixel size", &tstatus); /* CROTAn - Rotation angle (degrees CCW) */ /* There should only be a CROTA2 keyword, and only for 2+ D images */ if (ii == 1) { ffkeyn("TCROT", histData.hcolnum[ii], keyname, &tstatus); ffgky(*fptr, TDOUBLE, keyname, &dvalue, NULL, &tstatus); if (!tstatus && dvalue != 0.) /* only write keyword if angle != 0 */ { ffkeyn("CROTA", ii + 1, keyname, &tstatus); ffpky(histptr, TDOUBLE, keyname, &dvalue, "Rotation angle", &tstatus); } else { /* didn't find CROTA for the 2nd axis, so look for one */ /* on the first axis */ tstatus = 0; ffkeyn("TCROT", histData.hcolnum[0], keyname, &tstatus); ffgky(*fptr, TDOUBLE, keyname, &dvalue, NULL, &tstatus); if (!tstatus && dvalue != 0.) /* only write keyword if angle != 0 */ { dvalue *= -1.; /* negate the value, because mirror image */ ffkeyn("CROTA", ii + 1, keyname, &tstatus); ffpky(histptr, TDOUBLE, keyname, &dvalue, "Rotation angle", &tstatus); } } } } /* convert any TPn_k keywords to PCi_j; the value remains unchanged */ /* also convert any TCn_k to CDi_j; the value is modified by n binning size */ /* This is a bit of a kludge, and only works for 2D WCS */ if (histData.haxis == 2) { /* PC1_1 */ tstatus = 0; ffkeyn("TP", histData.hcolnum[0], card, &tstatus); strcat(card,"_"); ffkeyn(card, histData.hcolnum[0], keyname, &tstatus); ffgky(*fptr, TDOUBLE, keyname, &dvalue, card, &tstatus); if (!tstatus) ffpky(histptr, TDOUBLE, "PC1_1", &dvalue, card, &tstatus); tstatus = 0; keyname[1] = 'C'; ffgky(*fptr, TDOUBLE, keyname, &dvalue, card, &tstatus); if (!tstatus) { dvalue *= binsize[0]; ffpky(histptr, TDOUBLE, "CD1_1", &dvalue, card, &tstatus); } /* PC1_2 */ tstatus = 0; ffkeyn("TP", histData.hcolnum[0], card, &tstatus); strcat(card,"_"); ffkeyn(card, histData.hcolnum[1], keyname, &tstatus); ffgky(*fptr, TDOUBLE, keyname, &dvalue, card, &tstatus); if (!tstatus) ffpky(histptr, TDOUBLE, "PC1_2", &dvalue, card, &tstatus); tstatus = 0; keyname[1] = 'C'; ffgky(*fptr, TDOUBLE, keyname, &dvalue, card, &tstatus); if (!tstatus) { dvalue *= binsize[0]; ffpky(histptr, TDOUBLE, "CD1_2", &dvalue, card, &tstatus); } /* PC2_1 */ tstatus = 0; ffkeyn("TP", histData.hcolnum[1], card, &tstatus); strcat(card,"_"); ffkeyn(card, histData.hcolnum[0], keyname, &tstatus); ffgky(*fptr, TDOUBLE, keyname, &dvalue, card, &tstatus); if (!tstatus) ffpky(histptr, TDOUBLE, "PC2_1", &dvalue, card, &tstatus); tstatus = 0; keyname[1] = 'C'; ffgky(*fptr, TDOUBLE, keyname, &dvalue, card, &tstatus); if (!tstatus) { dvalue *= binsize[1]; ffpky(histptr, TDOUBLE, "CD2_1", &dvalue, card, &tstatus); } /* PC2_2 */ tstatus = 0; ffkeyn("TP", histData.hcolnum[1], card, &tstatus); strcat(card,"_"); ffkeyn(card, histData.hcolnum[1], keyname, &tstatus); ffgky(*fptr, TDOUBLE, keyname, &dvalue, card, &tstatus); if (!tstatus) ffpky(histptr, TDOUBLE, "PC2_2", &dvalue, card, &tstatus); tstatus = 0; keyname[1] = 'C'; ffgky(*fptr, TDOUBLE, keyname, &dvalue, card, &tstatus); if (!tstatus) { dvalue *= binsize[1]; ffpky(histptr, TDOUBLE, "CD2_2", &dvalue, card, &tstatus); } } /* finally, close the original file and return ptr to the new image */ ffclos(*fptr, status); *fptr = histptr; return(*status); } /*--------------------------------------------------------------------------*/ int fits_calc_binning( fitsfile *fptr, /* IO - pointer to table to be binned ; */ int naxis, /* I - number of axes/columns in the binned image */ char colname[4][FLEN_VALUE], /* I - optional column names */ double *minin, /* I - optional lower bound value for each axis */ double *maxin, /* I - optional upper bound value, for each axis */ double *binsizein, /* I - optional bin size along each axis */ char minname[4][FLEN_VALUE], /* I - optional keywords for min */ char maxname[4][FLEN_VALUE], /* I - optional keywords for max */ char binname[4][FLEN_VALUE], /* I - optional keywords for binsize */ /* The returned parameters for each axis of the n-dimensional histogram are */ int *colnum, /* O - column numbers, to be binned */ long *haxes, /* O - number of bins in each histogram axis */ float *amin, /* O - lower bound of the histogram axes */ float *amax, /* O - upper bound of the histogram axes */ float *binsize, /* O - width of histogram bins/pixels on each axis */ int *status) /*_ Calculate the actual binning parameters, based on various user input options. */ { tcolumn *colptr; char *cptr, cpref[4][FLEN_VALUE]; char errmsg[FLEN_ERRMSG], keyname[FLEN_KEYWORD]; int tstatus, ii; int datatype, repeat, imin, imax, ibin, use_datamax = 0; float datamin, datamax; /* check inputs */ if (*status > 0) return(*status); if (naxis > 4) { ffpmsg("histograms with more than 4 dimensions are not supported"); return(*status = BAD_DIMEN); } /* reset position to the correct HDU if necessary */ if ((fptr)->HDUposition != ((fptr)->Fptr)->curhdu) ffmahd(fptr, ((fptr)->HDUposition) + 1, NULL, status); /* ============================================================= */ /* The CPREF keyword, if it exists, gives the preferred columns. */ /* Otherwise, assume "X", "Y", "Z", and "T" */ *cpref[0] = '\0'; *cpref[1] = '\0'; *cpref[2] = '\0'; *cpref[3] = '\0'; tstatus = 0; ffgky(fptr, TSTRING, "CPREF", cpref[0], NULL, &tstatus); if (!tstatus) { /* Preferred column names are given; separate them */ cptr = cpref[0]; /* the first preferred axis... */ while (*cptr != ',' && *cptr != '\0') cptr++; if (*cptr != '\0') { *cptr = '\0'; cptr++; while (*cptr == ' ') cptr++; strcpy(cpref[1], cptr); cptr = cpref[1]; /* the second preferred axis... */ while (*cptr != ',' && *cptr != '\0') cptr++; if (*cptr != '\0') { *cptr = '\0'; cptr++; while (*cptr == ' ') cptr++; strcpy(cpref[2], cptr); cptr = cpref[2]; /* the third preferred axis... */ while (*cptr != ',' && *cptr != '\0') cptr++; if (*cptr != '\0') { *cptr = '\0'; cptr++; while (*cptr == ' ') cptr++; strcpy(cpref[3], cptr); } } } } /* ============================================================= */ /* Main Loop for calculating parameters for each column */ for (ii = 0; ii < naxis; ii++) { /* =========================================================== */ /* Determine column Number, based on, in order of priority, 1 input column name, or 2 name given by CPREF keyword, or 3 assume X, Y, Z and T for the name */ if (*colname[ii] == '\0') { strcpy(colname[ii], cpref[ii]); /* try using the preferred column */ if (*colname[ii] == '\0') { if (ii == 0) strcpy(colname[ii], "X"); else if (ii == 1) strcpy(colname[ii], "Y"); else if (ii == 2) strcpy(colname[ii], "Z"); else if (ii == 3) strcpy(colname[ii], "T"); } } /* get the column number in the table */ if (ffgcno(fptr, CASEINSEN, colname[ii], colnum+ii, status) > 0) { strcpy(errmsg, "column for histogram axis doesn't exist: "); strcat(errmsg, colname[ii]); ffpmsg(errmsg); return(*status); } /* ================================================================ */ /* check tha column is not a vector or a string */ colptr = ((fptr)->Fptr)->tableptr; colptr += (colnum[ii] - 1); repeat = (int) colptr->trepeat; /* vector repeat factor of the column */ if (repeat > 1) { strcpy(errmsg, "Can't bin a vector column: "); strcat(errmsg, colname[ii]); ffpmsg(errmsg); return(*status = BAD_DATATYPE); } /* get the datatype of the column */ fits_get_coltype(fptr, colnum[ii], &datatype, NULL, NULL, status); if (datatype < 0 || datatype == TSTRING) { strcpy(errmsg, "Inappropriate datatype; can't bin this column: "); strcat(errmsg, colname[ii]); ffpmsg(errmsg); return(*status = BAD_DATATYPE); } /* ================================================================ */ /* get the minimum value */ datamin = FLOATNULLVALUE; datamax = FLOATNULLVALUE; if (*minname[ii]) { if (ffgky(fptr, TDOUBLE, minname[ii], &minin[ii], NULL, status) ) { ffpmsg("error reading histogramming minimum keyword"); ffpmsg(minname[ii]); return(*status); } } if (minin[ii] != DOUBLENULLVALUE) { amin[ii] = (float) minin[ii]; } else { ffkeyn("TLMIN", colnum[ii], keyname, status); if (ffgky(fptr, TFLOAT, keyname, amin+ii, NULL, status) > 0) { /* use actual data minimum value for the histogram minimum */ *status = 0; if (fits_get_col_minmax(fptr, colnum[ii], amin+ii, &datamax, status) > 0) { strcpy(errmsg, "Error calculating datamin and datamax for column: "); strcat(errmsg, colname[ii]); ffpmsg(errmsg); return(*status); } } } /* ================================================================ */ /* get the maximum value */ if (*maxname[ii]) { if (ffgky(fptr, TDOUBLE, maxname[ii], &maxin[ii], NULL, status) ) { ffpmsg("error reading histogramming maximum keyword"); ffpmsg(maxname[ii]); return(*status); } } if (maxin[ii] != DOUBLENULLVALUE) { amax[ii] = (float) maxin[ii]; } else { ffkeyn("TLMAX", colnum[ii], keyname, status); if (ffgky(fptr, TFLOAT, keyname, &amax[ii], NULL, status) > 0) { *status = 0; if(datamax != FLOATNULLVALUE) /* already computed max value */ { amax[ii] = datamax; } else { /* use actual data maximum value for the histogram maximum */ if (fits_get_col_minmax(fptr, colnum[ii], &datamin, &amax[ii], status) > 0) { strcpy(errmsg, "Error calculating datamin and datamax for column: "); strcat(errmsg, colname[ii]); ffpmsg(errmsg); return(*status); } } } use_datamax = 1; /* flag that the max was determined by the data values */ /* and not specifically set by the calling program */ } /* ================================================================ */ /* determine binning size and range */ if (*binname[ii]) { if (ffgky(fptr, TDOUBLE, binname[ii], &binsizein[ii], NULL, status) ) { ffpmsg("error reading histogramming binsize keyword"); ffpmsg(binname[ii]); return(*status); } } if (binsizein[ii] == 0.) { ffpmsg("error: histogram binsize = 0"); return(*status = ZERO_SCALE); } /* use TDBINn keyword or else 1 if bin size is not given */ if (binsizein[ii] != DOUBLENULLVALUE) { binsize[ii] = (float) binsizein[ii]; } else { tstatus = 0; ffkeyn("TDBIN", colnum[ii], keyname, &tstatus); if (ffgky(fptr, TDOUBLE, keyname, binsizein + ii, NULL, &tstatus) > 0) { /* make at least 10 bins */ binsize[ii] = (amax[ii] - amin[ii]) / 10.F ; if (binsize[ii] > 1.) binsize[ii] = 1.; /* use default bin size */ } } /* ================================================================ */ /* if the min is greater than the max, make the binsize negative */ if ( (amin[ii] > amax[ii] && binsize[ii] > 0. ) || (amin[ii] < amax[ii] && binsize[ii] < 0. ) ) binsize[ii] = -binsize[ii]; /* reverse the sign of binsize */ ibin = (int) binsize[ii]; imin = (int) amin[ii]; imax = (int) amax[ii]; /* Determine the range and number of bins in the histogram. This */ /* depends on whether the input columns are integer or floats, so */ /* treat each case separately. */ if (datatype <= TLONG && (float) imin == amin[ii] && (float) imax == amax[ii] && (float) ibin == binsize[ii] ) { /* This is an integer column and integer limits were entered. */ /* Shift the lower and upper histogramming limits by 0.5, so that */ /* the values fall in the center of the bin, not on the edge. */ haxes[ii] = (imax - imin) / ibin + 1; /* last bin may only */ /* be partially full */ if (amin[ii] < amax[ii]) { amin[ii] = (float) (amin[ii] - 0.5); amax[ii] = (float) (amax[ii] + 0.5); } else { amin[ii] = (float) (amin[ii] + 0.5); amax[ii] = (float) (amax[ii] - 0.5); } } else if (use_datamax) { /* Either the column datatype and/or the limits are floating point, */ /* and the histogram limits are being defined by the min and max */ /* values of the array. Add 1 to the number of histogram bins to */ /* make sure that pixels that are equal to the maximum or are */ /* in the last partial bin are included. */ haxes[ii] = (long) (((amax[ii] - amin[ii]) / binsize[ii]) + 1.); } else { /* float datatype column and/or limits, and the maximum value to */ /* include in the histogram is specified by the calling program. */ /* The lower limit is inclusive, but upper limit is exclusive */ haxes[ii] = (long) ((amax[ii] - amin[ii]) / binsize[ii]); if (amin[ii] < amax[ii]) { if (amin[ii] + (haxes[ii] * binsize[ii]) < amax[ii]) haxes[ii]++; /* need to include another partial bin */ } else { if (amin[ii] + (haxes[ii] * binsize[ii]) > amax[ii]) haxes[ii]++; /* need to include another partial bin */ } } } return(*status); } /*--------------------------------------------------------------------------*/ int fits_write_keys_histo( fitsfile *fptr, /* I - pointer to table to be binned */ fitsfile *histptr, /* I - pointer to output histogram image HDU */ int naxis, /* I - number of axes in the histogram image */ int *colnum, /* I - column numbers (array length = naxis) */ int *status) { /* Write default WCS keywords in the output histogram image header */ /* if the keywords do not already exist. */ int ii, tstatus; char keyname[FLEN_KEYWORD], svalue[FLEN_VALUE]; double dvalue; if (*status > 0) return(*status); for (ii = 0; ii < naxis; ii++) { /* CTYPEn */ tstatus = 0; ffkeyn("CTYPE", ii+1, keyname, &tstatus); ffgky(histptr, TSTRING, keyname, svalue, NULL, &tstatus); if (!tstatus) continue; /* keyword already exists, so skip to next axis */ /* use column name as the axis name */ tstatus = 0; ffkeyn("TTYPE", colnum[ii], keyname, &tstatus); ffgky(fptr, TSTRING, keyname, svalue, NULL, &tstatus); if (!tstatus) { ffkeyn("CTYPE", ii + 1, keyname, &tstatus); ffpky(histptr, TSTRING, keyname, svalue, "Coordinate Type", &tstatus); } /* CUNITn, use the column units */ tstatus = 0; ffkeyn("TUNIT", colnum[ii], keyname, &tstatus); ffgky(fptr, TSTRING, keyname, svalue, NULL, &tstatus); if (!tstatus) { ffkeyn("CUNIT", ii + 1, keyname, &tstatus); ffpky(histptr, TSTRING, keyname, svalue, "Coordinate Units", &tstatus); } /* CRPIXn - Reference Pixel choose first pixel in new image as ref. pix. */ dvalue = 1.0; tstatus = 0; ffkeyn("CRPIX", ii + 1, keyname, &tstatus); ffpky(histptr, TDOUBLE, keyname, &dvalue, "Reference Pixel", &tstatus); /* CRVALn - Value at the location of the reference pixel */ dvalue = 1.0; tstatus = 0; ffkeyn("CRVAL", ii + 1, keyname, &tstatus); ffpky(histptr, TDOUBLE, keyname, &dvalue, "Reference Value", &tstatus); /* CDELTn - unit size of pixels */ dvalue = 1.0; tstatus = 0; dvalue = 1.; ffkeyn("CDELT", ii + 1, keyname, &tstatus); ffpky(histptr, TDOUBLE, keyname, &dvalue, "Pixel size", &tstatus); } return(*status); } /*--------------------------------------------------------------------------*/ int fits_rebin_wcs( fitsfile *fptr, /* I - pointer to table to be binned */ int naxis, /* I - number of axes in the histogram image */ float *amin, /* I - first pixel include in each axis */ float *binsize, /* I - binning factor for each axis */ int *status) { /* Update the WCS keywords that define the location of the reference */ /* pixel, and the pixel size, along each axis. */ int ii, jj, tstatus, reset ; char keyname[FLEN_KEYWORD], svalue[FLEN_VALUE]; double dvalue; if (*status > 0) return(*status); for (ii = 0; ii < naxis; ii++) { reset = 0; /* flag to reset the reference pixel */ tstatus = 0; ffkeyn("CRVAL", ii + 1, keyname, &tstatus); /* get previous (pre-binning) value */ ffgky(fptr, TDOUBLE, keyname, &dvalue, NULL, &tstatus); if (!tstatus && dvalue == 1.0) reset = 1; tstatus = 0; /* CRPIXn - update location of the ref. pix. in the binned image */ ffkeyn("CRPIX", ii + 1, keyname, &tstatus); /* get previous (pre-binning) value */ ffgky(fptr, TDOUBLE, keyname, &dvalue, NULL, &tstatus); if (!tstatus) { if (dvalue != 1.0) reset = 0; /* updated value to give pixel location after binning */ dvalue = (dvalue - amin[ii]) / ((double) binsize[ii]) + .5; fits_modify_key_dbl(fptr, keyname, dvalue, -14, NULL, &tstatus); } else { reset = 0; } /* CDELTn - update unit size of pixels */ tstatus = 0; ffkeyn("CDELT", ii + 1, keyname, &tstatus); /* get previous (pre-binning) value */ ffgky(fptr, TDOUBLE, keyname, &dvalue, NULL, &tstatus); if (!tstatus) { if (dvalue != 1.0) reset = 0; /* updated to give post-binning value */ dvalue = dvalue * binsize[ii]; fits_modify_key_dbl(fptr, keyname, dvalue, -14, NULL, &tstatus); } else { /* no CDELTn keyword, so look for a CDij keywords */ reset = 0; for (jj = 0; jj < naxis; jj++) { tstatus = 0; ffkeyn("CD", jj + 1, svalue, &tstatus); strcat(svalue,"_"); ffkeyn(svalue, ii + 1, keyname, &tstatus); /* get previous (pre-binning) value */ ffgky(fptr, TDOUBLE, keyname, &dvalue, NULL, &tstatus); if (!tstatus) { /* updated to give post-binning value */ dvalue = dvalue * binsize[ii]; fits_modify_key_dbl(fptr, keyname, dvalue, -14, NULL, &tstatus); } } } if (reset) { /* the original CRPIX, CRVAL, and CDELT keywords were all = 1.0 */ /* In this special case, reset the reference pixel to be the */ /* first pixel in the array (instead of possibly far off the array) */ dvalue = 1.0; ffkeyn("CRPIX", ii + 1, keyname, &tstatus); fits_modify_key_dbl(fptr, keyname, dvalue, -14, NULL, &tstatus); ffkeyn("CRVAL", ii + 1, keyname, &tstatus); dvalue = amin[ii] + (binsize[ii] / 2.0); fits_modify_key_dbl(fptr, keyname, dvalue, -14, NULL, &tstatus); } } return(*status); } /*--------------------------------------------------------------------------*/ int fits_make_hist(fitsfile *fptr, /* IO - pointer to table with X and Y cols; */ fitsfile *histptr, /* I - pointer to output FITS image */ int bitpix, /* I - datatype for image: 16, 32, -32, etc */ int naxis, /* I - number of axes in the histogram image */ long *naxes, /* I - size of axes in the histogram image */ int *colnum, /* I - column numbers (array length = naxis) */ float *amin, /* I - minimum histogram value, for each axis */ float *amax, /* I - maximum histogram value, for each axis */ float *binsize, /* I - bin size along each axis */ float weight, /* I - binning weighting factor */ int wtcolnum, /* I - optional keyword or col for weight*/ int recip, /* I - use reciprocal of the weight? */ char *selectrow, /* I - optional array (length = no. of */ /* rows in the table). If the element is true */ /* then the corresponding row of the table will*/ /* be included in the histogram, otherwise the */ /* row will be skipped. Ingnored if *selectrow*/ /* is equal to NULL. */ int *status) { int ii, imagetype, datatype; int n_cols = 1; long imin, imax, ibin; long offset = 0; long n_per_loop = -1; /* force whole array to be passed at one time */ float taxes[4], tmin[4], tmax[4], tbin[4], maxbin[4]; histType histData; /* Structure holding histogram info for iterator */ iteratorCol imagepars[1]; /* check inputs */ if (*status > 0) return(*status); if (naxis > 4) { ffpmsg("histogram has more than 4 dimensions"); return(*status = BAD_DIMEN); } if (bitpix == BYTE_IMG) imagetype = TBYTE; else if (bitpix == SHORT_IMG) imagetype = TSHORT; else if (bitpix == LONG_IMG) imagetype = TINT; else if (bitpix == FLOAT_IMG) imagetype = TFLOAT; else if (bitpix == DOUBLE_IMG) imagetype = TDOUBLE; else return(*status = BAD_DATATYPE); /* reset position to the correct HDU if necessary */ if ((fptr)->HDUposition != ((fptr)->Fptr)->curhdu) ffmahd(fptr, ((fptr)->HDUposition) + 1, NULL, status); histData.weight = weight; histData.wtcolnum = wtcolnum; histData.wtrecip = recip; histData.tblptr = fptr; histData.himagetype = imagetype; histData.haxis = naxis; histData.rowselector = selectrow; for (ii = 0; ii < naxis; ii++) { taxes[ii] = (float) naxes[ii]; tmin[ii] = amin[ii]; tmax[ii] = amax[ii]; if ( (amin[ii] > amax[ii] && binsize[ii] > 0. ) || (amin[ii] < amax[ii] && binsize[ii] < 0. ) ) tbin[ii] = -binsize[ii]; /* reverse the sign of binsize */ else tbin[ii] = binsize[ii]; /* binsize has the correct sign */ imin = (long) tmin[ii]; imax = (long) tmax[ii]; ibin = (long) tbin[ii]; /* get the datatype of the column */ fits_get_coltype(fptr, colnum[ii], &datatype, NULL, NULL, status); if (datatype <= TLONG && (float) imin == tmin[ii] && (float) imax == tmax[ii] && (float) ibin == tbin[ii] ) { /* This is an integer column and integer limits were entered. */ /* Shift the lower and upper histogramming limits by 0.5, so that */ /* the values fall in the center of the bin, not on the edge. */ maxbin[ii] = (taxes[ii] + 1.F); /* add 1. instead of .5 to avoid roundoff */ if (tmin[ii] < tmax[ii]) { tmin[ii] = tmin[ii] - 0.5F; tmax[ii] = tmax[ii] + 0.5F; } else { tmin[ii] = tmin[ii] + 0.5F; tmax[ii] = tmax[ii] - 0.5F; } } else { /* not an integer column with integer limits */ maxbin[ii] = (tmax[ii] - tmin[ii]) / tbin[ii]; } } /* Set global variables with histogram parameter values. */ /* Use separate scalar variables rather than arrays because */ /* it is more efficient when computing the histogram. */ histData.hcolnum[0] = colnum[0]; histData.amin1 = tmin[0]; histData.maxbin1 = maxbin[0]; histData.binsize1 = tbin[0]; histData.haxis1 = (long) taxes[0]; if (histData.haxis > 1) { histData.hcolnum[1] = colnum[1]; histData.amin2 = tmin[1]; histData.maxbin2 = maxbin[1]; histData.binsize2 = tbin[1]; histData.haxis2 = (long) taxes[1]; if (histData.haxis > 2) { histData.hcolnum[2] = colnum[2]; histData.amin3 = tmin[2]; histData.maxbin3 = maxbin[2]; histData.binsize3 = tbin[2]; histData.haxis3 = (long) taxes[2]; if (histData.haxis > 3) { histData.hcolnum[3] = colnum[3]; histData.amin4 = tmin[3]; histData.maxbin4 = maxbin[3]; histData.binsize4 = tbin[3]; histData.haxis4 = (long) taxes[3]; } } } /* define parameters of image for the iterator function */ fits_iter_set_file(imagepars, histptr); /* pointer to image */ fits_iter_set_datatype(imagepars, imagetype); /* image datatype */ fits_iter_set_iotype(imagepars, OutputCol); /* image is output */ /* call the iterator function to write out the histogram image */ fits_iterate_data(n_cols, imagepars, offset, n_per_loop, ffwritehisto, (void*)&histData, status); return(*status); } /*--------------------------------------------------------------------------*/ int fits_get_col_minmax(fitsfile *fptr, int colnum, float *datamin, float *datamax, int *status) /* Simple utility routine to compute the min and max value in a column */ { int anynul; long nrows, ntodo, firstrow, ii; float array[1000], nulval; ffgky(fptr, TLONG, "NAXIS2", &nrows, NULL, status); /* no. of rows */ firstrow = 1; nulval = FLOATNULLVALUE; *datamin = 9.0E36F; *datamax = -9.0E36F; while(nrows) { ntodo = minvalue(nrows, 100); ffgcv(fptr, TFLOAT, colnum, firstrow, 1, ntodo, &nulval, array, &anynul, status); for (ii = 0; ii < ntodo; ii++) { if (array[ii] != nulval) { *datamin = minvalue(*datamin, array[ii]); *datamax = maxvalue(*datamax, array[ii]); } } nrows -= ntodo; firstrow += ntodo; } return(*status); } /*--------------------------------------------------------------------------*/ int ffwritehisto(long totaln, long pixoffset, long firstn, long nvalues, int narrays, iteratorCol *imagepars, void *userPointer) /* Interator work function that writes out the histogram. The histogram values are calculated by another work function, ffcalchisto. This work function only gets called once, and totaln = nvalues. */ { iteratorCol colpars[5]; int ii, status = 0, ncols; long rows_per_loop = 0, offset = 0; histType *histData; histData = (histType *)userPointer; /* store pointer to the histogram array, and initialize to zero */ switch( histData->himagetype ) { case TBYTE: histData->hist.b = (char * ) fits_iter_get_array(imagepars); break; case TSHORT: histData->hist.i = (short * ) fits_iter_get_array(imagepars); break; case TINT: histData->hist.j = (int * ) fits_iter_get_array(imagepars); break; case TFLOAT: histData->hist.r = (float * ) fits_iter_get_array(imagepars); break; case TDOUBLE: histData->hist.d = (double *) fits_iter_get_array(imagepars); break; } /* set the column parameters for the iterator function */ for (ii = 0; ii < histData->haxis; ii++) { fits_iter_set_by_num(&colpars[ii], histData->tblptr, histData->hcolnum[ii], TFLOAT, InputCol); } ncols = histData->haxis; if (histData->weight == FLOATNULLVALUE) { fits_iter_set_by_num(&colpars[histData->haxis], histData->tblptr, histData->wtcolnum, TFLOAT, InputCol); ncols = histData->haxis + 1; } /* call iterator function to calc the histogram pixel values */ /* must lock this call in multithreaded environoments because */ /* the ffcalchist work routine uses static vaiables that would */ /* get clobbered if multiple threads were running at the same time */ FFLOCK; fits_iterate_data(ncols, colpars, offset, rows_per_loop, ffcalchist, (void*)histData, &status); FFUNLOCK; return(status); } /*--------------------------------------------------------------------------*/ int ffcalchist(long totalrows, long offset, long firstrow, long nrows, int ncols, iteratorCol *colpars, void *userPointer) /* Interator work function that calculates values for the 2D histogram. */ { long ii, ipix, iaxisbin; float pix, axisbin; static float *col1, *col2, *col3, *col4; /* static to preserve values */ static float *wtcol; static long incr2, incr3, incr4; static histType histData; static char *rowselect; /* Initialization procedures: execute on the first call */ if (firstrow == 1) { /* Copy input histogram data to static local variable so we */ /* don't have to constantly dereference it. */ histData = *(histType*)userPointer; rowselect = histData.rowselector; /* assign the input array pointers to local pointers */ col1 = (float *) fits_iter_get_array(&colpars[0]); if (histData.haxis > 1) { col2 = (float *) fits_iter_get_array(&colpars[1]); incr2 = histData.haxis1; if (histData.haxis > 2) { col3 = (float *) fits_iter_get_array(&colpars[2]); incr3 = incr2 * histData.haxis2; if (histData.haxis > 3) { col4 = (float *) fits_iter_get_array(&colpars[3]); incr4 = incr3 * histData.haxis3; } } } if (ncols > histData.haxis) /* then weights are give in a column */ { wtcol = (float *) fits_iter_get_array(&colpars[histData.haxis]); } } /* end of Initialization procedures */ /* Main loop: increment the histogram at position of each event */ for (ii = 1; ii <= nrows; ii++) { if (rowselect) /* if a row selector array is supplied... */ { if (*rowselect) { rowselect++; /* this row is included in the histogram */ } else { rowselect++; /* this row is excluded from the histogram */ continue; } } if (col1[ii] == FLOATNULLVALUE) /* test for null value */ continue; pix = (col1[ii] - histData.amin1) / histData.binsize1; ipix = (long) (pix + 1.); /* add 1 because the 1st pixel is the null value */ /* test if bin is within range */ if (ipix < 1 || ipix > histData.haxis1 || pix > histData.maxbin1) continue; if (histData.haxis > 1) { if (col2[ii] == FLOATNULLVALUE) continue; axisbin = (col2[ii] - histData.amin2) / histData.binsize2; iaxisbin = (long) axisbin; if (axisbin < 0. || iaxisbin >= histData.haxis2 || axisbin > histData.maxbin2) continue; ipix += (iaxisbin * incr2); if (histData.haxis > 2) { if (col3[ii] == FLOATNULLVALUE) continue; axisbin = (col3[ii] - histData.amin3) / histData.binsize3; iaxisbin = (long) axisbin; if (axisbin < 0. || iaxisbin >= histData.haxis3 || axisbin > histData.maxbin3) continue; ipix += (iaxisbin * incr3); if (histData.haxis > 3) { if (col4[ii] == FLOATNULLVALUE) continue; axisbin = (col4[ii] - histData.amin4) / histData.binsize4; iaxisbin = (long) axisbin; if (axisbin < 0. || iaxisbin >= histData.haxis4 || axisbin > histData.maxbin4) continue; ipix += (iaxisbin * incr4); } /* end of haxis > 3 case */ } /* end of haxis > 2 case */ } /* end of haxis > 1 case */ /* increment the histogram pixel */ if (histData.weight != FLOATNULLVALUE) /* constant weight factor */ { if (histData.himagetype == TINT) histData.hist.j[ipix] += (int) histData.weight; else if (histData.himagetype == TSHORT) histData.hist.i[ipix] += (short) histData.weight; else if (histData.himagetype == TFLOAT) histData.hist.r[ipix] += histData.weight; else if (histData.himagetype == TDOUBLE) histData.hist.d[ipix] += histData.weight; else if (histData.himagetype == TBYTE) histData.hist.b[ipix] += (char) histData.weight; } else if (histData.wtrecip) /* use reciprocal of the weight */ { if (histData.himagetype == TINT) histData.hist.j[ipix] += (int) (1./wtcol[ii]); else if (histData.himagetype == TSHORT) histData.hist.i[ipix] += (short) (1./wtcol[ii]); else if (histData.himagetype == TFLOAT) histData.hist.r[ipix] += (float) (1./wtcol[ii]); else if (histData.himagetype == TDOUBLE) histData.hist.d[ipix] += 1./wtcol[ii]; else if (histData.himagetype == TBYTE) histData.hist.b[ipix] += (char) (1./wtcol[ii]); } else /* no weights */ { if (histData.himagetype == TINT) histData.hist.j[ipix] += (int) wtcol[ii]; else if (histData.himagetype == TSHORT) histData.hist.i[ipix] += (short) wtcol[ii]; else if (histData.himagetype == TFLOAT) histData.hist.r[ipix] += wtcol[ii]; else if (histData.himagetype == TDOUBLE) histData.hist.d[ipix] += wtcol[ii]; else if (histData.himagetype == TBYTE) histData.hist.b[ipix] += (char) wtcol[ii]; } } /* end of main loop over all rows */ return(0); } healpy-1.8.1/cfitsio/pliocomp.c0000654000175000017530000001563312272000775017053 0ustar zoncaplanck00000000000000/* stdlib is needed for the abs function */ #include /* The following prototype code was provided by Doug Tody, NRAO, for performing conversion between pixel arrays and line lists. The compression technique is used in IRAF. */ int pl_p2li (int *pxsrc, int xs, short *lldst, int npix); int pl_l2pi (short *ll_src, int xs, int *px_dst, int npix); /* * PL_P2L -- Convert a pixel array to a line list. The length of the list is * returned as the function value. * * Translated from the SPP version using xc -f, f2c. 8Sep99 DCT. */ #ifndef min #define min(a,b) (((a)<(b))?(a):(b)) #endif #ifndef max #define max(a,b) (((a)>(b))?(a):(b)) #endif int pl_p2li (int *pxsrc, int xs, short *lldst, int npix) /* int *pxsrc; input pixel array */ /* int xs; starting index in pxsrc (?) */ /* short *lldst; encoded line list */ /* int npix; number of pixels to convert */ { /* System generated locals */ int ret_val, i__1, i__2, i__3; /* Local variables */ int zero, v, x1, hi, ip, dv, xe, np, op, iz, nv = 0, pv, nz; /* Parameter adjustments */ --lldst; --pxsrc; /* Function Body */ if (! (npix <= 0)) { goto L110; } ret_val = 0; goto L100; L110: lldst[3] = -100; lldst[2] = 7; lldst[1] = 0; lldst[6] = 0; lldst[7] = 0; xe = xs + npix - 1; op = 8; zero = 0; /* Computing MAX */ i__1 = zero, i__2 = pxsrc[xs]; pv = max(i__1,i__2); x1 = xs; iz = xs; hi = 1; i__1 = xe; for (ip = xs; ip <= i__1; ++ip) { if (! (ip < xe)) { goto L130; } /* Computing MAX */ i__2 = zero, i__3 = pxsrc[ip + 1]; nv = max(i__2,i__3); if (! (nv == pv)) { goto L140; } goto L120; L140: if (! (pv == 0)) { goto L150; } pv = nv; x1 = ip + 1; goto L120; L150: goto L131; L130: if (! (pv == 0)) { goto L160; } x1 = xe + 1; L160: L131: np = ip - x1 + 1; nz = x1 - iz; if (! (pv > 0)) { goto L170; } dv = pv - hi; if (! (dv != 0)) { goto L180; } hi = pv; if (! (abs(dv) > 4095)) { goto L190; } lldst[op] = (short) ((pv & 4095) + 4096); ++op; lldst[op] = (short) (pv / 4096); ++op; goto L191; L190: if (! (dv < 0)) { goto L200; } lldst[op] = (short) (-dv + 12288); goto L201; L200: lldst[op] = (short) (dv + 8192); L201: ++op; if (! (np == 1 && nz == 0)) { goto L210; } v = lldst[op - 1]; lldst[op - 1] = (short) (v | 16384); goto L91; L210: L191: L180: L170: if (! (nz > 0)) { goto L220; } L230: if (! (nz > 0)) { goto L232; } lldst[op] = (short) min(4095,nz); ++op; /* L231: */ nz += -4095; goto L230; L232: if (! (np == 1 && pv > 0)) { goto L240; } lldst[op - 1] = (short) (lldst[op - 1] + 20481); goto L91; L240: L220: L250: if (! (np > 0)) { goto L252; } lldst[op] = (short) (min(4095,np) + 16384); ++op; /* L251: */ np += -4095; goto L250; L252: L91: x1 = ip + 1; iz = x1; pv = nv; L120: ; } /* L121: */ lldst[4] = (short) ((op - 1) % 32768); lldst[5] = (short) ((op - 1) / 32768); ret_val = op - 1; goto L100; L100: return ret_val; } /* plp2li_ */ /* * PL_L2PI -- Translate a PLIO line list into an integer pixel array. * The number of pixels output (always npix) is returned as the function * value. * * Translated from the SPP version using xc -f, f2c. 8Sep99 DCT. */ int pl_l2pi (short *ll_src, int xs, int *px_dst, int npix) /* short *ll_src; encoded line list */ /* int xs; starting index in ll_src */ /* int *px_dst; output pixel array */ /* int npix; number of pixels to convert */ { /* System generated locals */ int ret_val, i__1, i__2; /* Local variables */ int data, sw0001, otop, i__, lllen, i1, i2, x1, x2, ip, xe, np, op, pv, opcode, llfirt; int skipwd; /* Parameter adjustments */ --px_dst; --ll_src; /* Function Body */ if (! (ll_src[3] > 0)) { goto L110; } lllen = ll_src[3]; llfirt = 4; goto L111; L110: lllen = (ll_src[5] << 15) + ll_src[4]; llfirt = ll_src[2] + 1; L111: if (! (npix <= 0 || lllen <= 0)) { goto L120; } ret_val = 0; goto L100; L120: xe = xs + npix - 1; skipwd = 0; op = 1; x1 = 1; pv = 1; i__1 = lllen; for (ip = llfirt; ip <= i__1; ++ip) { if (! skipwd) { goto L140; } skipwd = 0; goto L130; L140: opcode = ll_src[ip] / 4096; data = ll_src[ip] & 4095; sw0001 = opcode; goto L150; L160: x2 = x1 + data - 1; i1 = max(x1,xs); i2 = min(x2,xe); np = i2 - i1 + 1; if (! (np > 0)) { goto L170; } otop = op + np - 1; if (! (opcode == 4)) { goto L180; } i__2 = otop; for (i__ = op; i__ <= i__2; ++i__) { px_dst[i__] = pv; /* L190: */ } /* L191: */ goto L181; L180: i__2 = otop; for (i__ = op; i__ <= i__2; ++i__) { px_dst[i__] = 0; /* L200: */ } /* L201: */ if (! (opcode == 5 && i2 == x2)) { goto L210; } px_dst[otop] = pv; L210: L181: op = otop + 1; L170: x1 = x2 + 1; goto L151; L220: pv = (ll_src[ip + 1] << 12) + data; skipwd = 1; goto L151; L230: pv += data; goto L151; L240: pv -= data; goto L151; L250: pv += data; goto L91; L260: pv -= data; L91: if (! (x1 >= xs && x1 <= xe)) { goto L270; } px_dst[op] = pv; ++op; L270: ++x1; goto L151; L150: ++sw0001; if (sw0001 < 1 || sw0001 > 8) { goto L151; } switch ((int)sw0001) { case 1: goto L160; case 2: goto L220; case 3: goto L230; case 4: goto L240; case 5: goto L160; case 6: goto L160; case 7: goto L250; case 8: goto L260; } L151: if (! (x1 > xe)) { goto L280; } goto L131; L280: L130: ; } L131: i__1 = npix; for (i__ = op; i__ <= i__1; ++i__) { px_dst[i__] = 0; /* L290: */ } /* L291: */ ret_val = npix; goto L100; L100: return ret_val; } /* pll2pi_ */ healpy-1.8.1/cfitsio/iter_a.c0000654000175000017530000001220512272000775016464 0ustar zoncaplanck00000000000000#include #include #include #include "fitsio.h" /* This program illustrates how to use the CFITSIO iterator function. It reads and modifies the input 'iter_a.fit' file by computing a value for the 'rate' column as a function of the values in the other 'counts' and 'time' columns. */ main() { extern flux_rate(); /* external work function is passed to the iterator */ fitsfile *fptr; iteratorCol cols[3]; /* structure used by the iterator function */ int n_cols; long rows_per_loop, offset; int status, nkeys, keypos, hdutype, ii, jj; char filename[] = "iter_a.fit"; /* name of rate FITS file */ status = 0; fits_open_file(&fptr, filename, READWRITE, &status); /* open file */ /* move to the desired binary table extension */ if (fits_movnam_hdu(fptr, BINARY_TBL, "RATE", 0, &status) ) fits_report_error(stderr, status); /* print out error messages */ n_cols = 3; /* number of columns */ /* define input column structure members for the iterator function */ fits_iter_set_by_name(&cols[0], fptr, "COUNTS", TLONG, InputCol); fits_iter_set_by_name(&cols[1], fptr, "TIME", TFLOAT, InputCol); fits_iter_set_by_name(&cols[2], fptr, "RATE", TFLOAT, OutputCol); rows_per_loop = 0; /* use default optimum number of rows */ offset = 0; /* process all the rows */ /* apply the rate function to each row of the table */ printf("Calling iterator function...%d\n", status); fits_iterate_data(n_cols, cols, offset, rows_per_loop, flux_rate, 0L, &status); fits_close_file(fptr, &status); /* all done */ if (status) fits_report_error(stderr, status); /* print out error messages */ return(status); } /*--------------------------------------------------------------------------*/ int flux_rate(long totalrows, long offset, long firstrow, long nrows, int ncols, iteratorCol *cols, void *user_strct ) /* Sample iterator function that calculates the output flux 'rate' column by dividing the input 'counts' by the 'time' column. It also applies a constant deadtime correction factor if the 'deadtime' keyword exists. Finally, this creates or updates the 'LIVETIME' keyword with the sum of all the individual integration times. */ { int ii, status = 0; /* declare variables static to preserve their values between calls */ static long *counts; static float *interval; static float *rate; static float deadtime, livetime; /* must preserve values between calls */ /*--------------------------------------------------------*/ /* Initialization procedures: execute on the first call */ /*--------------------------------------------------------*/ if (firstrow == 1) { if (ncols != 3) return(-1); /* number of columns incorrect */ if (fits_iter_get_datatype(&cols[0]) != TLONG || fits_iter_get_datatype(&cols[1]) != TFLOAT || fits_iter_get_datatype(&cols[2]) != TFLOAT ) return(-2); /* bad data type */ /* assign the input pointers to the appropriate arrays and null ptrs*/ counts = (long *) fits_iter_get_array(&cols[0]); interval = (float *) fits_iter_get_array(&cols[1]); rate = (float *) fits_iter_get_array(&cols[2]); livetime = 0; /* initialize the total integration time */ /* try to get the deadtime keyword value */ fits_read_key(cols[0].fptr, TFLOAT, "DEADTIME", &deadtime, '\0', &status); if (status) { deadtime = 1.0; /* default deadtime if keyword doesn't exist */ } else if (deadtime < 0. || deadtime > 1.0) { return(-1); /* bad deadtime value */ } printf("deadtime = %f\n", deadtime); } /*--------------------------------------------*/ /* Main loop: process all the rows of data */ /*--------------------------------------------*/ /* NOTE: 1st element of array is the null pixel value! */ /* Loop from 1 to nrows, not 0 to nrows - 1. */ /* this version tests for null values */ rate[0] = DOUBLENULLVALUE; /* define the value that represents null */ for (ii = 1; ii <= nrows; ii++) { if (counts[ii] == counts[0]) /* undefined counts value? */ { rate[ii] = DOUBLENULLVALUE; } else if (interval[ii] > 0.) { rate[ii] = counts[ii] / interval[ii] / deadtime; livetime += interval[ii]; /* accumulate total integration time */ } else return(-2); /* bad integration time */ } /*-------------------------------------------------------*/ /* Clean up procedures: after processing all the rows */ /*-------------------------------------------------------*/ if (firstrow + nrows - 1 == totalrows) { /* update the LIVETIME keyword value */ fits_update_key(cols[0].fptr, TFLOAT, "LIVETIME", &livetime, "total integration time", &status); printf("livetime = %f\n", livetime); } return(0); /* return successful status */ } healpy-1.8.1/cfitsio/putcoluj.c0000654000175000017530000010316512272000775017074 0ustar zoncaplanck00000000000000/* This file, putcoluj.c, contains routines that write data elements to */ /* a FITS image or table, with unsigned long datatype. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffppruj( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to write(1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ unsigned long *array, /* I - array of values that are written */ int *status) /* IO - error status */ /* Write an array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long row; unsigned long nullvalue; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_write_compressed_pixels(fptr, TULONG, firstelem, nelem, 0, array, &nullvalue, status); return(*status); } row=maxvalue(1,group); ffpcluj(fptr, 2, row, firstelem, nelem, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffppnuj( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to write(1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ unsigned long *array, /* I - array of values that are written */ unsigned long nulval, /* I - undefined pixel value */ int *status) /* IO - error status */ /* Write an array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). Any array values that are equal to the value of nulval will be replaced with the null pixel value that is appropriate for this column. */ { long row; unsigned long nullvalue; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ nullvalue = nulval; /* set local variable */ fits_write_compressed_pixels(fptr, TULONG, firstelem, nelem, 1, array, &nullvalue, status); return(*status); } row=maxvalue(1,group); ffpcnuj(fptr, 2, row, firstelem, nelem, array, nulval, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffp2duj(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ unsigned long *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write an entire 2-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { /* call the 3D writing routine, with the 3rd dimension = 1 */ ffp3duj(fptr, group, ncols, naxis2, naxis1, naxis2, 1, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffp3duj(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG nrows, /* I - number of rows in each plane of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ LONGLONG naxis3, /* I - FITS image NAXIS3 value */ unsigned long *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write an entire 3-D cube of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long tablerow, ii, jj; long fpixel[3]= {1,1,1}, lpixel[3]; LONGLONG nfits, narray; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ lpixel[0] = (long) ncols; lpixel[1] = (long) nrows; lpixel[2] = (long) naxis3; fits_write_compressed_img(fptr, TULONG, fpixel, lpixel, 0, array, NULL, status); return(*status); } tablerow=maxvalue(1,group); if (ncols == naxis1 && nrows == naxis2) /* arrays have same size? */ { /* all the image pixels are contiguous, so write all at once */ ffpcluj(fptr, 2, tablerow, 1L, naxis1 * naxis2 * naxis3, array, status); return(*status); } if (ncols < naxis1 || nrows < naxis2) return(*status = BAD_DIMEN); nfits = 1; /* next pixel in FITS image to write to */ narray = 0; /* next pixel in input array to be written */ /* loop over naxis3 planes in the data cube */ for (jj = 0; jj < naxis3; jj++) { /* loop over the naxis2 rows in the FITS image, */ /* writing naxis1 pixels to each row */ for (ii = 0; ii < naxis2; ii++) { if (ffpcluj(fptr, 2, tablerow, nfits, naxis1,&array[narray],status) > 0) return(*status); nfits += naxis1; narray += ncols; } narray += (nrows - naxis2) * ncols; } return(*status); } /*--------------------------------------------------------------------------*/ int ffpssuj(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ long naxis, /* I - number of data axes in array */ long *naxes, /* I - size of each FITS axis */ long *fpixel, /* I - 1st pixel in each axis to write (1=1st) */ long *lpixel, /* I - last pixel in each axis to write */ unsigned long *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write a subsection of pixels to the primary array or image. A subsection is defined to be any contiguous rectangular array of pixels within the n-dimensional FITS data file. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long tablerow; LONGLONG fpix[7], dimen[7], astart, pstart; LONGLONG off2, off3, off4, off5, off6, off7; LONGLONG st10, st20, st30, st40, st50, st60, st70; LONGLONG st1, st2, st3, st4, st5, st6, st7; long ii, i1, i2, i3, i4, i5, i6, i7, irange[7]; if (*status > 0) return(*status); if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_write_compressed_img(fptr, TULONG, fpixel, lpixel, 0, array, NULL, status); return(*status); } if (naxis < 1 || naxis > 7) return(*status = BAD_DIMEN); tablerow=maxvalue(1,group); /* calculate the size and number of loops to perform in each dimension */ for (ii = 0; ii < 7; ii++) { fpix[ii]=1; irange[ii]=1; dimen[ii]=1; } for (ii = 0; ii < naxis; ii++) { fpix[ii]=fpixel[ii]; irange[ii]=lpixel[ii]-fpixel[ii]+1; dimen[ii]=naxes[ii]; } i1=irange[0]; /* compute the pixel offset between each dimension */ off2 = dimen[0]; off3 = off2 * dimen[1]; off4 = off3 * dimen[2]; off5 = off4 * dimen[3]; off6 = off5 * dimen[4]; off7 = off6 * dimen[5]; st10 = fpix[0]; st20 = (fpix[1] - 1) * off2; st30 = (fpix[2] - 1) * off3; st40 = (fpix[3] - 1) * off4; st50 = (fpix[4] - 1) * off5; st60 = (fpix[5] - 1) * off6; st70 = (fpix[6] - 1) * off7; /* store the initial offset in each dimension */ st1 = st10; st2 = st20; st3 = st30; st4 = st40; st5 = st50; st6 = st60; st7 = st70; astart = 0; for (i7 = 0; i7 < irange[6]; i7++) { for (i6 = 0; i6 < irange[5]; i6++) { for (i5 = 0; i5 < irange[4]; i5++) { for (i4 = 0; i4 < irange[3]; i4++) { for (i3 = 0; i3 < irange[2]; i3++) { pstart = st1 + st2 + st3 + st4 + st5 + st6 + st7; for (i2 = 0; i2 < irange[1]; i2++) { if (ffpcluj(fptr, 2, tablerow, pstart, i1, &array[astart], status) > 0) return(*status); astart += i1; pstart += off2; } st2 = st20; st3 = st3+off3; } st3 = st30; st4 = st4+off4; } st4 = st40; st5 = st5+off5; } st5 = st50; st6 = st6+off6; } st6 = st60; st7 = st7+off7; } return(*status); } /*--------------------------------------------------------------------------*/ int ffpgpuj( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ long firstelem, /* I - first vector element to write(1 = 1st) */ long nelem, /* I - number of values to write */ unsigned long *array, /* I - array of values that are written */ int *status) /* IO - error status */ /* Write an array of group parameters to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long row; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffpcluj(fptr, 1L, row, firstelem, nelem, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffpcluj( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ unsigned long *array, /* I - array of values to write */ int *status) /* IO - error status */ /* Write an array of values to a column in the current FITS HDU. The column number may refer to a real column in an ASCII or binary table, or it may refer to a virtual column in a 1 or more grouped FITS primary array. FITSIO treats a primary array as a binary table with 2 vector columns: the first column contains the group parameters (often with length = 0) and the second column contains the array of image pixels. Each row of the table represents a group in the case of multigroup FITS images. The input array of values will be converted to the datatype of the column and will be inverse-scaled by the FITS TSCALn and TZEROn values if necessary. */ { int tcode, maxelem, hdutype; long twidth, incre; long ntodo; LONGLONG repeat, startpos, elemnum, wrtptr, rowlen, rownum, remain, next, tnull; double scale, zero; char tform[20], cform[20]; char message[FLEN_ERRMSG]; char snull[20]; /* the FITS null value */ double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */ void *buffer; if (*status > 0) /* inherit input status value if > 0 */ return(*status); buffer = cbuff; /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if (ffgcprll( fptr, colnum, firstrow, firstelem, nelem, 1, &scale, &zero, tform, &twidth, &tcode, &maxelem, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0) return(*status); if (tcode == TSTRING) ffcfmt(tform, cform); /* derive C format for writing strings */ /*---------------------------------------------------------------------*/ /* Now write the pixels to the FITS column. */ /* First call the ffXXfYY routine to (1) convert the datatype */ /* if necessary, and (2) scale the values by the FITS TSCALn and */ /* TZEROn linear scaling parameters into a temporary buffer. */ /*---------------------------------------------------------------------*/ remain = nelem; /* remaining number of values to write */ next = 0; /* next element in array to be written */ rownum = 0; /* row number, relative to firstrow */ while (remain) { /* limit the number of pixels to process a one time to the number that will fit in the buffer space or to the number of pixels that remain in the current vector, which ever is smaller. */ ntodo = (long) minvalue(remain, maxelem); ntodo = (long) minvalue(ntodo, (repeat - elemnum)); wrtptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * incre); ffmbyt(fptr, wrtptr, IGNORE_EOF, status); /* move to write position */ switch (tcode) { case (TLONG): ffu4fi4(&array[next], ntodo, scale, zero, (INT32BIT *) buffer, status); ffpi4b(fptr, ntodo, incre, (INT32BIT *) buffer, status); break; case (TLONGLONG): ffu4fi8(&array[next], ntodo, scale, zero, (LONGLONG *) buffer, status); ffpi8b(fptr, ntodo, incre, (long *) buffer, status); break; case (TBYTE): ffu4fi1(&array[next], ntodo, scale, zero, (unsigned char *) buffer, status); ffpi1b(fptr, ntodo, incre, (unsigned char *) buffer, status); break; case (TSHORT): ffu4fi2(&array[next], ntodo, scale, zero, (short *) buffer, status); ffpi2b(fptr, ntodo, incre, (short *) buffer, status); break; case (TFLOAT): ffu4fr4(&array[next], ntodo, scale, zero, (float *) buffer, status); ffpr4b(fptr, ntodo, incre, (float *) buffer, status); break; case (TDOUBLE): ffu4fr8(&array[next], ntodo, scale, zero, (double *) buffer, status); ffpr8b(fptr, ntodo, incre, (double *) buffer, status); break; case (TSTRING): /* numerical column in an ASCII table */ if (cform[1] != 's') /* "%s" format is a string */ { ffu4fstr(&array[next], ntodo, scale, zero, cform, twidth, (char *) buffer, status); if (incre == twidth) /* contiguous bytes */ ffpbyt(fptr, ntodo * twidth, buffer, status); else ffpbytoff(fptr, twidth, ntodo, incre - twidth, buffer, status); break; } /* can't write to string column, so fall thru to default: */ default: /* error trap */ sprintf(message, "Cannot write numbers to column %d which has format %s", colnum,tform); ffpmsg(message); if (hdutype == ASCII_TBL) return(*status = BAD_ATABLE_FORMAT); else return(*status = BAD_BTABLE_FORMAT); } /* End of switch block */ /*-------------------------*/ /* Check for fatal error */ /*-------------------------*/ if (*status > 0) /* test for error during previous write operation */ { sprintf(message, "Error writing elements %.0f thru %.0f of input data array (ffpcluj).", (double) (next+1), (double) (next+ntodo)); ffpmsg(message); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain -= ntodo; if (remain) { next += ntodo; elemnum += ntodo; if (elemnum == repeat) /* completed a row; start on next row */ { elemnum = 0; rownum++; } } } /* End of main while Loop */ /*--------------------------------*/ /* check for numerical overflow */ /*--------------------------------*/ if (*status == OVERFLOW_ERR) { ffpmsg( "Numerical overflow during type conversion while writing FITS data."); *status = NUM_OVERFLOW; } return(*status); } /*--------------------------------------------------------------------------*/ int ffpcnuj( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ unsigned long *array, /* I - array of values to write */ unsigned long nulvalue, /* I - value used to flag undefined pixels */ int *status) /* IO - error status */ /* Write an array of elements to the specified column of a table. Any input pixels equal to the value of nulvalue will be replaced by the appropriate null value in the output FITS file. The input array of values will be converted to the datatype of the column and will be inverse-scaled by the FITS TSCALn and TZEROn values if necessary */ { tcolumn *colptr; LONGLONG ngood = 0, nbad = 0, ii; LONGLONG repeat, first, fstelm, fstrow; int tcode, overflow = 0; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) { if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); } colptr = (fptr->Fptr)->tableptr; /* point to first column */ colptr += (colnum - 1); /* offset to correct column structure */ tcode = colptr->tdatatype; if (tcode > 0) repeat = colptr->trepeat; /* repeat count for this column */ else repeat = firstelem -1 + nelem; /* variable length arrays */ /* if variable length array, first write the whole input vector, then go back and fill in the nulls */ if (tcode < 0) { if (ffpcluj(fptr, colnum, firstrow, firstelem, nelem, array, status) > 0) { if (*status == NUM_OVERFLOW) { /* ignore overflows, which are possibly the null pixel values */ /* overflow = 1; */ *status = 0; } else { return(*status); } } } /* absolute element number in the column */ first = (firstrow - 1) * repeat + firstelem; for (ii = 0; ii < nelem; ii++) { if (array[ii] != nulvalue) /* is this a good pixel? */ { if (nbad) /* write previous string of bad pixels */ { fstelm = ii - nbad + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (ffpclu(fptr, colnum, fstrow, fstelm, nbad, status) > 0) return(*status); nbad=0; } ngood = ngood +1; /* the consecutive number of good pixels */ } else { if (ngood) /* write previous string of good pixels */ { fstelm = ii - ngood + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (tcode > 0) { /* variable length arrays have already been written */ if (ffpcluj(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status) > 0) { if (*status == NUM_OVERFLOW) { overflow = 1; *status = 0; } else { return(*status); } } } ngood=0; } nbad = nbad +1; /* the consecutive number of bad pixels */ } } /* finished loop; now just write the last set of pixels */ if (ngood) /* write last string of good pixels */ { fstelm = ii - ngood + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (tcode > 0) { /* variable length arrays have already been written */ ffpcluj(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status); } } else if (nbad) /* write last string of bad pixels */ { fstelm = ii - nbad + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ ffpclu(fptr, colnum, fstrow, fstelm, nbad, status); } if (*status <= 0) { if (overflow) { *status = NUM_OVERFLOW; } } return(*status); } /*--------------------------------------------------------------------------*/ int ffu4fi1(unsigned long *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ unsigned char *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { if (input[ii] > UCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) input[ii]; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) (dvalue + .5); } } return(*status); } /*--------------------------------------------------------------------------*/ int ffu4fi2(unsigned long *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ short *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { if (input[ii] > SHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = (short) input[ii]; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else { if (dvalue >= 0) output[ii] = (short) (dvalue + .5); else output[ii] = (short) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffu4fi4(unsigned long *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ INT32BIT *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required */ { long ii; double dvalue; if (scale == 1. && zero == 2147483648. && sizeof(long) == 4) { /* Instead of subtracting 2147483648, it is more efficient */ /* to just flip the sign bit with the XOR operator */ for (ii = 0; ii < ntodo; ii++) output[ii] = ( *(long *) &input[ii] ) ^ 0x80000000; } else if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { if (input[ii] > INT32_MAX) { *status = OVERFLOW_ERR; output[ii] = INT32_MAX; } else output[ii] = input[ii]; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT32_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT32_MAX; } else { if (dvalue >= 0) output[ii] = (INT32BIT) (dvalue + .5); else output[ii] = (INT32BIT) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffu4fi8(unsigned long *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ LONGLONG *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = input[ii]; } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (dvalue > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else { if (dvalue >= 0) output[ii] = (LONGLONG) (dvalue + .5); else output[ii] = (LONGLONG) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffu4fr4(unsigned long *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ float *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = (float) input[ii]; } else { for (ii = 0; ii < ntodo; ii++) output[ii] = (float) ((input[ii] - zero) / scale); } return(*status); } /*--------------------------------------------------------------------------*/ int ffu4fr8(unsigned long *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ double *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = (double) input[ii]; } else { for (ii = 0; ii < ntodo; ii++) output[ii] = (input[ii] - zero) / scale; } return(*status); } /*--------------------------------------------------------------------------*/ int ffu4fstr(unsigned long *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ char *cform, /* I - format for output string values */ long twidth, /* I - width of each field, in chars */ char *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do scaling if required. */ { long ii; double dvalue; char *cptr; cptr = output; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { sprintf(output, cform, (double) input[ii]); output += twidth; if (*output) /* if this char != \0, then overflow occurred */ *status = OVERFLOW_ERR; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; sprintf(output, cform, dvalue); output += twidth; if (*output) /* if this char != \0, then overflow occurred */ *status = OVERFLOW_ERR; } } /* replace any commas with periods (e.g., in French locale) */ while ((cptr = strchr(cptr, ','))) *cptr = '.'; return(*status); } healpy-1.8.1/cfitsio/putcolb.c0000654000175000017530000010745012272000775016700 0ustar zoncaplanck00000000000000/* This file, putcolb.c, contains routines that write data elements to */ /* a FITS image or table with char (byte) datatype. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffpprb( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to write(1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ unsigned char *array, /* I - array of values that are written */ int *status) /* IO - error status */ /* Write an array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long row; unsigned char nullvalue; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_write_compressed_pixels(fptr, TBYTE, firstelem, nelem, 0, array, &nullvalue, status); return(*status); } row=maxvalue(1,group); ffpclb(fptr, 2, row, firstelem, nelem, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffppnb( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to write(1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ unsigned char *array, /* I - array of values that are written */ unsigned char nulval, /* I - undefined pixel value */ int *status) /* IO - error status */ /* Write an array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). Any array values that are equal to the value of nulval will be replaced with the null pixel value that is appropriate for this column. */ { long row; unsigned char nullvalue; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ nullvalue = nulval; /* set local variable */ fits_write_compressed_pixels(fptr, TBYTE, firstelem, nelem, 1, array, &nullvalue, status); return(*status); } row=maxvalue(1,group); ffpcnb(fptr, 2, row, firstelem, nelem, array, nulval, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffp2db(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ unsigned char *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write an entire 2-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { /* call the 3D writing routine, with the 3rd dimension = 1 */ ffp3db(fptr, group, ncols, naxis2, naxis1, naxis2, 1, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffp3db(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG nrows, /* I - number of rows in each plane of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ LONGLONG naxis3, /* I - FITS image NAXIS3 value */ unsigned char *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write an entire 3-D cube of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long tablerow, ii, jj; LONGLONG nfits, narray; long fpixel[3]= {1,1,1}, lpixel[3]; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ lpixel[0] = (long) ncols; lpixel[1] = (long) nrows; lpixel[2] = (long) naxis3; fits_write_compressed_img(fptr, TBYTE, fpixel, lpixel, 0, array, NULL, status); return(*status); } tablerow=maxvalue(1,group); if (ncols == naxis1 && nrows == naxis2) /* arrays have same size? */ { /* all the image pixels are contiguous, so write all at once */ ffpclb(fptr, 2, tablerow, 1L, naxis1 * naxis2 * naxis3, array, status); return(*status); } if (ncols < naxis1 || nrows < naxis2) return(*status = BAD_DIMEN); nfits = 1; /* next pixel in FITS image to write to */ narray = 0; /* next pixel in input array to be written */ /* loop over naxis3 planes in the data cube */ for (jj = 0; jj < naxis3; jj++) { /* loop over the naxis2 rows in the FITS image, */ /* writing naxis1 pixels to each row */ for (ii = 0; ii < naxis2; ii++) { if (ffpclb(fptr, 2, tablerow, nfits, naxis1,&array[narray],status) > 0) return(*status); nfits += naxis1; narray += ncols; } narray += (nrows - naxis2) * ncols; } return(*status); } /*--------------------------------------------------------------------------*/ int ffpssb(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ long naxis, /* I - number of data axes in array */ long *naxes, /* I - size of each FITS axis */ long *fpixel, /* I - 1st pixel in each axis to write (1=1st) */ long *lpixel, /* I - last pixel in each axis to write */ unsigned char *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write a subsection of pixels to the primary array or image. A subsection is defined to be any contiguous rectangular array of pixels within the n-dimensional FITS data file. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long tablerow; LONGLONG fpix[7], dimen[7], astart, pstart; LONGLONG off2, off3, off4, off5, off6, off7; LONGLONG st10, st20, st30, st40, st50, st60, st70; LONGLONG st1, st2, st3, st4, st5, st6, st7; long ii, i1, i2, i3, i4, i5, i6, i7, irange[7]; if (*status > 0) return(*status); if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_write_compressed_img(fptr, TBYTE, fpixel, lpixel, 0, array, NULL, status); return(*status); } if (naxis < 1 || naxis > 7) return(*status = BAD_DIMEN); tablerow=maxvalue(1,group); /* calculate the size and number of loops to perform in each dimension */ for (ii = 0; ii < 7; ii++) { fpix[ii]=1; irange[ii]=1; dimen[ii]=1; } for (ii = 0; ii < naxis; ii++) { fpix[ii]=fpixel[ii]; irange[ii]=lpixel[ii]-fpixel[ii]+1; dimen[ii]=naxes[ii]; } i1=irange[0]; /* compute the pixel offset between each dimension */ off2 = dimen[0]; off3 = off2 * dimen[1]; off4 = off3 * dimen[2]; off5 = off4 * dimen[3]; off6 = off5 * dimen[4]; off7 = off6 * dimen[5]; st10 = fpix[0]; st20 = (fpix[1] - 1) * off2; st30 = (fpix[2] - 1) * off3; st40 = (fpix[3] - 1) * off4; st50 = (fpix[4] - 1) * off5; st60 = (fpix[5] - 1) * off6; st70 = (fpix[6] - 1) * off7; /* store the initial offset in each dimension */ st1 = st10; st2 = st20; st3 = st30; st4 = st40; st5 = st50; st6 = st60; st7 = st70; astart = 0; for (i7 = 0; i7 < irange[6]; i7++) { for (i6 = 0; i6 < irange[5]; i6++) { for (i5 = 0; i5 < irange[4]; i5++) { for (i4 = 0; i4 < irange[3]; i4++) { for (i3 = 0; i3 < irange[2]; i3++) { pstart = st1 + st2 + st3 + st4 + st5 + st6 + st7; for (i2 = 0; i2 < irange[1]; i2++) { if (ffpclb(fptr, 2, tablerow, pstart, i1, &array[astart], status) > 0) return(*status); astart += i1; pstart += off2; } st2 = st20; st3 = st3+off3; } st3 = st30; st4 = st4+off4; } st4 = st40; st5 = st5+off5; } st5 = st50; st6 = st6+off6; } st6 = st60; st7 = st7+off7; } return(*status); } /*--------------------------------------------------------------------------*/ int ffpgpb( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ long firstelem, /* I - first vector element to write(1 = 1st) */ long nelem, /* I - number of values to write */ unsigned char *array, /* I - array of values that are written */ int *status) /* IO - error status */ /* Write an array of group parameters to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long row; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffpclb(fptr, 1L, row, firstelem, nelem, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffpclb( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ unsigned char *array, /* I - array of values to write */ int *status) /* IO - error status */ /* Write an array of values to a column in the current FITS HDU. The column number may refer to a real column in an ASCII or binary table, or it may refer to a virtual column in a 1 or more grouped FITS primary array. FITSIO treats a primary array as a binary table with 2 vector columns: the first column contains the group parameters (often with length = 0) and the second column contains the array of image pixels. Each row of the table represents a group in the case of multigroup FITS images. The input array of values will be converted to the datatype of the column and will be inverse-scaled by the FITS TSCALn and TZEROn values if necessary. */ { int tcode, maxelem2, hdutype, writeraw; long twidth, incre; long ntodo; LONGLONG repeat, startpos, elemnum, wrtptr, rowlen, rownum, remain, next, tnull, maxelem; double scale, zero; char tform[20], cform[20]; char message[FLEN_ERRMSG]; char snull[20]; /* the FITS null value */ double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */ void *buffer; if (*status > 0) /* inherit input status value if > 0 */ return(*status); buffer = cbuff; /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if (ffgcprll( fptr, colnum, firstrow, firstelem, nelem, 1, &scale, &zero, tform, &twidth, &tcode, &maxelem2, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0) return(*status); maxelem = maxelem2; if (tcode == TSTRING) ffcfmt(tform, cform); /* derive C format for writing strings */ /* if there is no scaling then we can simply write the raw data bytes into the FITS file if the datatype of the FITS column is the same as the input values. Otherwise, we must convert the raw values into the scaled and/or machine dependent format in a temporary buffer that has been allocated for this purpose. */ if (scale == 1. && zero == 0. && tcode == TBYTE) { writeraw = 1; if (nelem < (LONGLONG)INT32_MAX) { maxelem = nelem; } else { maxelem = INT32_MAX; } } else writeraw = 0; /*---------------------------------------------------------------------*/ /* Now write the pixels to the FITS column. */ /* First call the ffXXfYY routine to (1) convert the datatype */ /* if necessary, and (2) scale the values by the FITS TSCALn and */ /* TZEROn linear scaling parameters into a temporary buffer. */ /*---------------------------------------------------------------------*/ remain = nelem; /* remaining number of values to write */ next = 0; /* next element in array to be written */ rownum = 0; /* row number, relative to firstrow */ while (remain) { /* limit the number of pixels to process a one time to the number that will fit in the buffer space or to the number of pixels that remain in the current vector, which ever is smaller. */ ntodo = (long) minvalue(remain, maxelem); ntodo = (long) minvalue(ntodo, (repeat - elemnum)); wrtptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * incre); ffmbyt(fptr, wrtptr, IGNORE_EOF, status); /* move to write position */ switch (tcode) { case (TBYTE): if (writeraw) { /* write raw input bytes without conversion */ ffpi1b(fptr, ntodo, incre, &array[next], status); } else { /* convert the raw data before writing to FITS file */ ffi1fi1(&array[next], ntodo, scale, zero, (unsigned char *) buffer, status); ffpi1b(fptr, ntodo, incre, (unsigned char *) buffer, status); } break; case (TLONGLONG): ffi1fi8(&array[next], ntodo, scale, zero, (LONGLONG *) buffer, status); ffpi8b(fptr, ntodo, incre, (long *) buffer, status); break; case (TSHORT): ffi1fi2(&array[next], ntodo, scale, zero, (short *) buffer, status); ffpi2b(fptr, ntodo, incre, (short *) buffer, status); break; case (TLONG): ffi1fi4(&array[next], ntodo, scale, zero, (INT32BIT *) buffer, status); ffpi4b(fptr, ntodo, incre, (INT32BIT *) buffer, status); break; case (TFLOAT): ffi1fr4(&array[next], ntodo, scale, zero, (float *) buffer, status); ffpr4b(fptr, ntodo, incre, (float *) buffer, status); break; case (TDOUBLE): ffi1fr8(&array[next], ntodo, scale, zero, (double *) buffer, status); ffpr8b(fptr, ntodo, incre, (double *) buffer, status); break; case (TSTRING): /* numerical column in an ASCII table */ if (strchr(tform,'A')) { /* write raw input bytes without conversion */ /* This case is a hack to let users write a stream */ /* of bytes directly to the 'A' format column */ if (incre == twidth) ffpbyt(fptr, ntodo, &array[next], status); else ffpbytoff(fptr, twidth, ntodo/twidth, incre - twidth, &array[next], status); break; } else if (cform[1] != 's') /* "%s" format is a string */ { ffi1fstr(&array[next], ntodo, scale, zero, cform, twidth, (char *) buffer, status); if (incre == twidth) /* contiguous bytes */ ffpbyt(fptr, ntodo * twidth, buffer, status); else ffpbytoff(fptr, twidth, ntodo, incre - twidth, buffer, status); break; } /* can't write to string column, so fall thru to default: */ default: /* error trap */ sprintf(message, "Cannot write numbers to column %d which has format %s", colnum,tform); ffpmsg(message); if (hdutype == ASCII_TBL) return(*status = BAD_ATABLE_FORMAT); else return(*status = BAD_BTABLE_FORMAT); } /* End of switch block */ /*-------------------------*/ /* Check for fatal error */ /*-------------------------*/ if (*status > 0) /* test for error during previous write operation */ { sprintf(message, "Error writing elements %.0f thru %.0f of input data array (ffpclb).", (double) (next+1), (double) (next+ntodo)); ffpmsg(message); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain -= ntodo; if (remain) { next += ntodo; elemnum += ntodo; if (elemnum == repeat) /* completed a row; start on next row */ { elemnum = 0; rownum++; } } } /* End of main while Loop */ /*--------------------------------*/ /* check for numerical overflow */ /*--------------------------------*/ if (*status == OVERFLOW_ERR) { ffpmsg( "Numerical overflow during type conversion while writing FITS data."); *status = NUM_OVERFLOW; } return(*status); } /*--------------------------------------------------------------------------*/ int ffpcnb( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ unsigned char *array, /* I - array of values to write */ unsigned char nulvalue, /* I - flag for undefined pixels */ int *status) /* IO - error status */ /* Write an array of elements to the specified column of a table. Any input pixels equal to the value of nulvalue will be replaced by the appropriate null value in the output FITS file. The input array of values will be converted to the datatype of the column and will be inverse-scaled by the FITS TSCALn and TZEROn values if necessary */ { tcolumn *colptr; LONGLONG ngood = 0, nbad = 0, ii; LONGLONG repeat, first, fstelm, fstrow; int tcode, overflow = 0; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) { if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); } colptr = (fptr->Fptr)->tableptr; /* point to first column */ colptr += (colnum - 1); /* offset to correct column structure */ tcode = colptr->tdatatype; if (tcode > 0) repeat = colptr->trepeat; /* repeat count for this column */ else repeat = firstelem -1 + nelem; /* variable length arrays */ /* if variable length array, first write the whole input vector, then go back and fill in the nulls */ if (tcode < 0) { if (ffpclb(fptr, colnum, firstrow, firstelem, nelem, array, status) > 0) { if (*status == NUM_OVERFLOW) { /* ignore overflows, which are possibly the null pixel values */ /* overflow = 1; */ *status = 0; } else { return(*status); } } } /* absolute element number in the column */ first = (firstrow - 1) * repeat + firstelem; for (ii = 0; ii < nelem; ii++) { if (array[ii] != nulvalue) /* is this a good pixel? */ { if (nbad) /* write previous string of bad pixels */ { fstelm = ii - nbad + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (ffpclu(fptr, colnum, fstrow, fstelm, nbad, status) > 0) return(*status); nbad=0; } ngood = ngood + 1; /* the consecutive number of good pixels */ } else { if (ngood) /* write previous string of good pixels */ { fstelm = ii - ngood + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (tcode > 0) { /* variable length arrays have already been written */ if (ffpclb(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status) > 0) { if (*status == NUM_OVERFLOW) { overflow = 1; *status = 0; } else { return(*status); } } } ngood=0; } nbad = nbad + 1; /* the consecutive number of bad pixels */ } } /* finished loop; now just write the last set of pixels */ if (ngood) /* write last string of good pixels */ { fstelm = ii - ngood + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (tcode > 0) { /* variable length arrays have already been written */ ffpclb(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status); } } else if (nbad) /* write last string of bad pixels */ { fstelm = ii - nbad + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ ffpclu(fptr, colnum, fstrow, fstelm, nbad, status); } if (*status <= 0) { if (overflow) { *status = NUM_OVERFLOW; } } return(*status); } /*--------------------------------------------------------------------------*/ int ffpextn( fitsfile *fptr, /* I - FITS file pointer */ LONGLONG offset, /* I - byte offset from start of extension data */ LONGLONG nelem, /* I - number of elements to write */ void *buffer, /* I - stream of bytes to write */ int *status) /* IO - error status */ /* Write a stream of bytes to the current FITS HDU. This primative routine is mainly for writing non-standard "conforming" extensions and should not be used for standard IMAGE, TABLE or BINTABLE extensions. */ { if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); /* rescan header if data structure is undefined */ else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) return(*status); /* move to write position */ ffmbyt(fptr, (fptr->Fptr)->datastart+ offset, IGNORE_EOF, status); /* write the buffer */ ffpbyt(fptr, nelem, buffer, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffi1fi1(unsigned char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ unsigned char *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { memcpy(output, input, ntodo); /* just copy input to output */ } else { for (ii = 0; ii < ntodo; ii++) { dvalue = ( ((double) input[ii]) - zero) / scale; if (dvalue < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) (dvalue + .5); } } return(*status); } /*--------------------------------------------------------------------------*/ int ffi1fi2(unsigned char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ short *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = input[ii]; /* just copy input to output */ } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (((double) input[ii]) - zero) / scale; if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else { if (dvalue >= 0) output[ii] = (short) (dvalue + .5); else output[ii] = (short) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffi1fi4(unsigned char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ INT32BIT *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = (INT32BIT) input[ii]; /* copy input to output */ } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (((double) input[ii]) - zero) / scale; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT32_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT32_MAX; } else { if (dvalue >= 0) output[ii] = (INT32BIT) (dvalue + .5); else output[ii] = (INT32BIT) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffi1fi8(unsigned char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ LONGLONG *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = input[ii]; } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (dvalue > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else { if (dvalue >= 0) output[ii] = (LONGLONG) (dvalue + .5); else output[ii] = (LONGLONG) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffi1fr4(unsigned char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ float *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = (float) input[ii]; } else { for (ii = 0; ii < ntodo; ii++) output[ii] = (float) (( ( (double) input[ii] ) - zero) / scale); } return(*status); } /*--------------------------------------------------------------------------*/ int ffi1fr8(unsigned char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ double *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = (double) input[ii]; } else { for (ii = 0; ii < ntodo; ii++) output[ii] = ( ( (double) input[ii] ) - zero) / scale; } return(*status); } /*--------------------------------------------------------------------------*/ int ffi1fstr(unsigned char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ char *cform, /* I - format for output string values */ long twidth, /* I - width of each field, in chars */ char *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do scaling if required. */ { long ii; double dvalue; char *cptr; cptr = output; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { sprintf(output, cform, (double) input[ii]); output += twidth; if (*output) /* if this char != \0, then overflow occurred */ *status = OVERFLOW_ERR; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = ((double) input[ii] - zero) / scale; sprintf(output, cform, dvalue); output += twidth; if (*output) /* if this char != \0, then overflow occurred */ *status = OVERFLOW_ERR; } } /* replace any commas with periods (e.g., in French locale) */ while ((cptr = strchr(cptr, ','))) *cptr = '.'; return(*status); } healpy-1.8.1/cfitsio/region.c0000654000175000017530000015446512272000775016523 0ustar zoncaplanck00000000000000#include #include #include #include #include #include "fitsio2.h" #include "region.h" static int Pt_in_Poly( double x, double y, int nPts, double *Pts ); /*---------------------------------------------------------------------------*/ int fits_read_rgnfile( const char *filename, WCSdata *wcs, SAORegion **Rgn, int *status ) /* Read regions from either a FITS or ASCII region file and return the information */ /* in the "SAORegion" structure. If it is nonNULL, use wcs to convert the */ /* region coordinates to pixels. Return an error if region is in degrees */ /* but no WCS data is provided. */ /*---------------------------------------------------------------------------*/ { fitsfile *fptr; int tstatus = 0; if( *status ) return( *status ); /* try to open as a FITS file - if that doesn't work treat as an ASCII file */ fits_write_errmark(); if ( ffopen(&fptr, filename, READONLY, &tstatus) ) { fits_clear_errmark(); fits_read_ascii_region(filename, wcs, Rgn, status); } else { fits_read_fits_region(fptr, wcs, Rgn, status); } return(*status); } /*---------------------------------------------------------------------------*/ int fits_read_ascii_region( const char *filename, WCSdata *wcs, SAORegion **Rgn, int *status ) /* Read regions from a SAO-style region file and return the information */ /* in the "SAORegion" structure. If it is nonNULL, use wcs to convert the */ /* region coordinates to pixels. Return an error if region is in degrees */ /* but no WCS data is provided. */ /*---------------------------------------------------------------------------*/ { char *currLine; char *namePtr, *paramPtr, *currLoc; char *pX, *pY, *endp; long allocLen, lineLen, hh, mm, dd; double *coords, X, Y, x, y, ss, div, xsave= 0., ysave= 0.; int nParams, nCoords, negdec; int i, done; FILE *rgnFile; coordFmt cFmt; SAORegion *aRgn; RgnShape *newShape, *tmpShape; if( *status ) return( *status ); aRgn = (SAORegion *)malloc( sizeof(SAORegion) ); if( ! aRgn ) { ffpmsg("Couldn't allocate memory to hold Region file contents."); return(*status = MEMORY_ALLOCATION ); } aRgn->nShapes = 0; aRgn->Shapes = NULL; if( wcs && wcs->exists ) aRgn->wcs = *wcs; else aRgn->wcs.exists = 0; cFmt = pixel_fmt; /* set default format */ /* Allocate Line Buffer */ allocLen = 512; currLine = (char *)malloc( allocLen * sizeof(char) ); if( !currLine ) { free( aRgn ); ffpmsg("Couldn't allocate memory to hold Region file contents."); return(*status = MEMORY_ALLOCATION ); } /* Open Region File */ if( (rgnFile = fopen( filename, "r" ))==NULL ) { sprintf(currLine,"Could not open Region file %s.",filename); ffpmsg( currLine ); free( currLine ); free( aRgn ); return( *status = FILE_NOT_OPENED ); } /* Read in file, line by line */ /* First, set error status in case file is empty */ *status = FILE_NOT_OPENED; while( fgets(currLine,allocLen,rgnFile) != NULL ) { /* reset status if we got here */ *status = 0; /* Make sure we have a full line of text */ lineLen = strlen(currLine); while( lineLen==allocLen-1 && currLine[lineLen-1]!='\n' ) { currLoc = (char *)realloc( currLine, 2 * allocLen * sizeof(char) ); if( !currLoc ) { ffpmsg("Couldn't allocate memory to hold Region file contents."); *status = MEMORY_ALLOCATION; goto error; } else { currLine = currLoc; } fgets( currLine+lineLen, allocLen+1, rgnFile ); allocLen += allocLen; lineLen += strlen(currLine+lineLen); } currLoc = currLine; if( *currLoc == '#' ) { /* Look to see if it is followed by a format statement... */ /* if not skip line */ currLoc++; while( isspace(*currLoc) ) currLoc++; if( !strncasecmp( currLoc, "format:", 7 ) ) { if( aRgn->nShapes ) { ffpmsg("Format code encountered after reading 1 or more shapes."); *status = PARSE_SYNTAX_ERR; goto error; } currLoc += 7; while( isspace(*currLoc) ) currLoc++; if( !strncasecmp( currLoc, "pixel", 5 ) ) { cFmt = pixel_fmt; } else if( !strncasecmp( currLoc, "degree", 6 ) ) { cFmt = degree_fmt; } else if( !strncasecmp( currLoc, "hhmmss", 6 ) ) { cFmt = hhmmss_fmt; } else if( !strncasecmp( currLoc, "hms", 3 ) ) { cFmt = hhmmss_fmt; } else { ffpmsg("Unknown format code encountered in region file."); *status = PARSE_SYNTAX_ERR; goto error; } } } else if( !strncasecmp( currLoc, "glob", 4 ) ) { /* skip lines that begin with the word 'global' */ } else { while( *currLoc != '\0' ) { namePtr = currLoc; paramPtr = NULL; nParams = 1; /* Search for closing parenthesis */ done = 0; while( !done && !*status && *currLoc ) { switch (*currLoc) { case '(': *currLoc = '\0'; currLoc++; if( paramPtr ) /* Can't have two '(' in a region! */ *status = 1; else paramPtr = currLoc; break; case ')': *currLoc = '\0'; currLoc++; if( !paramPtr ) /* Can't have a ')' without a '(' first */ *status = 1; else done = 1; break; case '#': case '\n': *currLoc = '\0'; if( !paramPtr ) /* Allow for a blank line */ done = 1; break; case ':': currLoc++; if ( paramPtr ) cFmt = hhmmss_fmt; /* set format if parameter has : */ break; case 'd': currLoc++; if ( paramPtr ) cFmt = degree_fmt; /* set format if parameter has d */ break; case ',': nParams++; /* Fall through to default */ default: currLoc++; break; } } if( *status || !done ) { ffpmsg( "Error reading Region file" ); *status = PARSE_SYNTAX_ERR; goto error; } /* Skip white space in region name */ while( isspace(*namePtr) ) namePtr++; /* Was this a blank line? Or the end of the current one */ if( ! *namePtr && ! paramPtr ) continue; /* Check for format code at beginning of the line */ if( !strncasecmp( namePtr, "image;", 6 ) ) { namePtr += 6; cFmt = pixel_fmt; } else if( !strncasecmp( namePtr, "physical;", 9 ) ) { namePtr += 9; cFmt = pixel_fmt; } else if( !strncasecmp( namePtr, "linear;", 7 ) ) { namePtr += 7; cFmt = pixel_fmt; } else if( !strncasecmp( namePtr, "fk4;", 4 ) ) { namePtr += 4; cFmt = degree_fmt; } else if( !strncasecmp( namePtr, "fk5;", 4 ) ) { namePtr += 4; cFmt = degree_fmt; } else if( !strncasecmp( namePtr, "icrs;", 5 ) ) { namePtr += 5; cFmt = degree_fmt; /* the following 5 cases support region files created by POW (or ds9 Version 4.x) which may have lines containing only a format code, not followed by a ';' (and with no region specifier on the line). We use the 'continue' statement to jump to the end of the loop and then continue reading the next line of the region file. */ } else if( !strncasecmp( namePtr, "fk5", 3 ) ) { cFmt = degree_fmt; continue; /* supports POW region file format */ } else if( !strncasecmp( namePtr, "fk4", 3 ) ) { cFmt = degree_fmt; continue; /* supports POW region file format */ } else if( !strncasecmp( namePtr, "icrs", 4 ) ) { cFmt = degree_fmt; continue; /* supports POW region file format */ } else if( !strncasecmp( namePtr, "image", 5 ) ) { cFmt = pixel_fmt; continue; /* supports POW region file format */ } else if( !strncasecmp( namePtr, "physical", 8 ) ) { cFmt = pixel_fmt; continue; /* supports POW region file format */ } else if( !strncasecmp( namePtr, "galactic;", 9 ) ) { ffpmsg( "Galactic region coordinates not supported" ); ffpmsg( namePtr ); *status = PARSE_SYNTAX_ERR; goto error; } else if( !strncasecmp( namePtr, "ecliptic;", 9 ) ) { ffpmsg( "ecliptic region coordinates not supported" ); ffpmsg( namePtr ); *status = PARSE_SYNTAX_ERR; goto error; } /**************************************************/ /* We've apparently found a region... Set it up */ /**************************************************/ if( !(aRgn->nShapes % 10) ) { if( aRgn->Shapes ) tmpShape = (RgnShape *)realloc( aRgn->Shapes, (10+aRgn->nShapes) * sizeof(RgnShape) ); else tmpShape = (RgnShape *) malloc( 10 * sizeof(RgnShape) ); if( tmpShape ) { aRgn->Shapes = tmpShape; } else { ffpmsg( "Failed to allocate memory for Region data"); *status = MEMORY_ALLOCATION; goto error; } } newShape = &aRgn->Shapes[aRgn->nShapes++]; newShape->sign = 1; newShape->shape = point_rgn; for (i=0; i<8; i++) newShape->param.gen.p[i] = 0.0; newShape->param.gen.a = 0.0; newShape->param.gen.b = 0.0; newShape->param.gen.sinT = 0.0; newShape->param.gen.cosT = 0.0; while( isspace(*namePtr) ) namePtr++; /* Check for the shape's sign */ if( *namePtr=='+' ) { namePtr++; } else if( *namePtr=='-' ) { namePtr++; newShape->sign = 0; } /* Skip white space in region name */ while( isspace(*namePtr) ) namePtr++; if( *namePtr=='\0' ) { ffpmsg( "Error reading Region file" ); *status = PARSE_SYNTAX_ERR; goto error; } lineLen = strlen( namePtr ) - 1; while( isspace(namePtr[lineLen]) ) namePtr[lineLen--] = '\0'; /* Now identify the region */ if( !strcasecmp( namePtr, "circle" ) ) { newShape->shape = circle_rgn; if( nParams != 3 ) *status = PARSE_SYNTAX_ERR; nCoords = 2; } else if( !strcasecmp( namePtr, "annulus" ) ) { newShape->shape = annulus_rgn; if( nParams != 4 ) *status = PARSE_SYNTAX_ERR; nCoords = 2; } else if( !strcasecmp( namePtr, "ellipse" ) ) { if( nParams < 4 || nParams > 8 ) { *status = PARSE_SYNTAX_ERR; } else if ( nParams < 6 ) { newShape->shape = ellipse_rgn; newShape->param.gen.p[4] = 0.0; } else { newShape->shape = elliptannulus_rgn; newShape->param.gen.p[6] = 0.0; newShape->param.gen.p[7] = 0.0; } nCoords = 2; } else if( !strcasecmp( namePtr, "elliptannulus" ) ) { newShape->shape = elliptannulus_rgn; if( !( nParams==8 || nParams==6 ) ) *status = PARSE_SYNTAX_ERR; newShape->param.gen.p[6] = 0.0; newShape->param.gen.p[7] = 0.0; nCoords = 2; } else if( !strcasecmp( namePtr, "box" ) || !strcasecmp( namePtr, "rotbox" ) ) { if( nParams < 4 || nParams > 8 ) { *status = PARSE_SYNTAX_ERR; } else if ( nParams < 6 ) { newShape->shape = box_rgn; newShape->param.gen.p[4] = 0.0; } else { newShape->shape = boxannulus_rgn; newShape->param.gen.p[6] = 0.0; newShape->param.gen.p[7] = 0.0; } nCoords = 2; } else if( !strcasecmp( namePtr, "rectangle" ) || !strcasecmp( namePtr, "rotrectangle" ) ) { newShape->shape = rectangle_rgn; if( nParams < 4 || nParams > 5 ) *status = PARSE_SYNTAX_ERR; newShape->param.gen.p[4] = 0.0; nCoords = 4; } else if( !strcasecmp( namePtr, "diamond" ) || !strcasecmp( namePtr, "rotdiamond" ) || !strcasecmp( namePtr, "rhombus" ) || !strcasecmp( namePtr, "rotrhombus" ) ) { newShape->shape = diamond_rgn; if( nParams < 4 || nParams > 5 ) *status = PARSE_SYNTAX_ERR; newShape->param.gen.p[4] = 0.0; nCoords = 2; } else if( !strcasecmp( namePtr, "sector" ) || !strcasecmp( namePtr, "pie" ) ) { newShape->shape = sector_rgn; if( nParams != 4 ) *status = PARSE_SYNTAX_ERR; nCoords = 2; } else if( !strcasecmp( namePtr, "point" ) ) { newShape->shape = point_rgn; if( nParams != 2 ) *status = PARSE_SYNTAX_ERR; nCoords = 2; } else if( !strcasecmp( namePtr, "line" ) ) { newShape->shape = line_rgn; if( nParams != 4 ) *status = PARSE_SYNTAX_ERR; nCoords = 4; } else if( !strcasecmp( namePtr, "polygon" ) ) { newShape->shape = poly_rgn; if( nParams < 6 || (nParams&1) ) *status = PARSE_SYNTAX_ERR; nCoords = nParams; } else if( !strcasecmp( namePtr, "panda" ) ) { newShape->shape = panda_rgn; if( nParams != 8 ) *status = PARSE_SYNTAX_ERR; nCoords = 2; } else if( !strcasecmp( namePtr, "epanda" ) ) { newShape->shape = epanda_rgn; if( nParams < 10 || nParams > 11 ) *status = PARSE_SYNTAX_ERR; newShape->param.gen.p[10] = 0.0; nCoords = 2; } else if( !strcasecmp( namePtr, "bpanda" ) ) { newShape->shape = bpanda_rgn; if( nParams < 10 || nParams > 11 ) *status = PARSE_SYNTAX_ERR; newShape->param.gen.p[10] = 0.0; nCoords = 2; } else { ffpmsg( "Unrecognized region found in region file:" ); ffpmsg( namePtr ); *status = PARSE_SYNTAX_ERR; goto error; } if( *status ) { ffpmsg( "Wrong number of parameters found for region" ); ffpmsg( namePtr ); goto error; } /* Parse Parameter string... convert to pixels if necessary */ if( newShape->shape==poly_rgn ) { newShape->param.poly.Pts = (double *)malloc( nParams * sizeof(double) ); if( !newShape->param.poly.Pts ) { ffpmsg( "Could not allocate memory to hold polygon parameters" ); *status = MEMORY_ALLOCATION; goto error; } newShape->param.poly.nPts = nParams; coords = newShape->param.poly.Pts; } else coords = newShape->param.gen.p; /* Parse the initial "WCS?" coordinates */ for( i=0; iexists ) { ffpmsg("WCS information needed to convert region coordinates."); *status = NO_WCS_KEY; goto error; } if( ffxypx( X, Y, wcs->xrefval, wcs->yrefval, wcs->xrefpix, wcs->yrefpix, wcs->xinc, wcs->yinc, wcs->rot, wcs->type, &x, &y, status ) ) { ffpmsg("Error converting region to pixel coordinates."); goto error; } X = x; Y = y; } coords[i] = X; coords[i+1] = Y; } /* Read in remaining parameters... */ for( ; ixrefval, wcs->yrefval, wcs->xrefpix, wcs->yrefpix, wcs->xinc, wcs->yinc, wcs->rot, wcs->type, &x, &y, status ) ) { ffpmsg("Error converting region to pixel coordinates."); goto error; } coords[i] = sqrt( pow(x-coords[0],2) + pow(y-coords[1],2) ); } } /* special case for elliptannulus and boxannulus if only one angle was given */ if ( (newShape->shape == elliptannulus_rgn || newShape->shape == boxannulus_rgn ) && nParams == 7 ) { coords[7] = coords[6]; } /* Also, correct the position angle for any WCS rotation: */ /* If regions are specified in WCS coordintes, then the angles */ /* are relative to the WCS system, not the pixel X,Y system */ if( cFmt!=pixel_fmt ) { switch( newShape->shape ) { case sector_rgn: case panda_rgn: coords[2] += (wcs->rot); coords[3] += (wcs->rot); break; case box_rgn: case rectangle_rgn: case diamond_rgn: case ellipse_rgn: coords[4] += (wcs->rot); break; case boxannulus_rgn: case elliptannulus_rgn: coords[6] += (wcs->rot); coords[7] += (wcs->rot); break; case epanda_rgn: case bpanda_rgn: coords[2] += (wcs->rot); coords[3] += (wcs->rot); coords[10] += (wcs->rot); default: break; } } /* do some precalculations to speed up tests */ fits_setup_shape(newShape); } /* End of while( *currLoc ) */ /* if (coords)printf("%.8f %.8f %.8f %.8f %.8f\n", coords[0],coords[1],coords[2],coords[3],coords[4]); */ } /* End of if...else parse line */ } /* End of while( fgets(rgnFile) ) */ /* set up component numbers */ fits_set_region_components( aRgn ); error: if( *status ) { fits_free_region( aRgn ); } else { *Rgn = aRgn; } fclose( rgnFile ); free( currLine ); return( *status ); } /*---------------------------------------------------------------------------*/ int fits_in_region( double X, double Y, SAORegion *Rgn ) /* Test if the given point is within the region described by Rgn. X and */ /* Y are in pixel coordinates. */ /*---------------------------------------------------------------------------*/ { double x, y, dx, dy, xprime, yprime, r, th; RgnShape *Shapes; int i, cur_comp; int result, comp_result; Shapes = Rgn->Shapes; result = 0; comp_result = 0; cur_comp = Rgn->Shapes[0].comp; for( i=0; inShapes; i++, Shapes++ ) { /* if this region has a different component number to the last one */ /* then replace the accumulated selection logical with the union of */ /* the current logical and the total logical. Reinitialize the */ /* temporary logical. */ if ( i==0 || Shapes->comp != cur_comp ) { result = result || comp_result; cur_comp = Shapes->comp; /* if an excluded region is given first, then implicitly */ /* assume a previous shape that includes the entire image. */ comp_result = !Shapes->sign; } /* only need to test if */ /* the point is not already included and this is an include region, */ /* or the point is included and this is an excluded region */ if ( (!comp_result && Shapes->sign) || (comp_result && !Shapes->sign) ) { comp_result = 1; switch( Shapes->shape ) { case box_rgn: /* Shift origin to center of region */ xprime = X - Shapes->param.gen.p[0]; yprime = Y - Shapes->param.gen.p[1]; /* Rotate point to region's orientation */ x = xprime * Shapes->param.gen.cosT + yprime * Shapes->param.gen.sinT; y = -xprime * Shapes->param.gen.sinT + yprime * Shapes->param.gen.cosT; dx = 0.5 * Shapes->param.gen.p[2]; dy = 0.5 * Shapes->param.gen.p[3]; if( (x < -dx) || (x > dx) || (y < -dy) || (y > dy) ) comp_result = 0; break; case boxannulus_rgn: /* Shift origin to center of region */ xprime = X - Shapes->param.gen.p[0]; yprime = Y - Shapes->param.gen.p[1]; /* Rotate point to region's orientation */ x = xprime * Shapes->param.gen.cosT + yprime * Shapes->param.gen.sinT; y = -xprime * Shapes->param.gen.sinT + yprime * Shapes->param.gen.cosT; dx = 0.5 * Shapes->param.gen.p[4]; dy = 0.5 * Shapes->param.gen.p[5]; if( (x < -dx) || (x > dx) || (y < -dy) || (y > dy) ) { comp_result = 0; } else { /* Repeat test for inner box */ x = xprime * Shapes->param.gen.b + yprime * Shapes->param.gen.a; y = -xprime * Shapes->param.gen.a + yprime * Shapes->param.gen.b; dx = 0.5 * Shapes->param.gen.p[2]; dy = 0.5 * Shapes->param.gen.p[3]; if( (x >= -dx) && (x <= dx) && (y >= -dy) && (y <= dy) ) comp_result = 0; } break; case rectangle_rgn: /* Shift origin to center of region */ xprime = X - Shapes->param.gen.p[5]; yprime = Y - Shapes->param.gen.p[6]; /* Rotate point to region's orientation */ x = xprime * Shapes->param.gen.cosT + yprime * Shapes->param.gen.sinT; y = -xprime * Shapes->param.gen.sinT + yprime * Shapes->param.gen.cosT; dx = Shapes->param.gen.a; dy = Shapes->param.gen.b; if( (x < -dx) || (x > dx) || (y < -dy) || (y > dy) ) comp_result = 0; break; case diamond_rgn: /* Shift origin to center of region */ xprime = X - Shapes->param.gen.p[0]; yprime = Y - Shapes->param.gen.p[1]; /* Rotate point to region's orientation */ x = xprime * Shapes->param.gen.cosT + yprime * Shapes->param.gen.sinT; y = -xprime * Shapes->param.gen.sinT + yprime * Shapes->param.gen.cosT; dx = 0.5 * Shapes->param.gen.p[2]; dy = 0.5 * Shapes->param.gen.p[3]; r = fabs(x/dx) + fabs(y/dy); if( r > 1 ) comp_result = 0; break; case circle_rgn: /* Shift origin to center of region */ x = X - Shapes->param.gen.p[0]; y = Y - Shapes->param.gen.p[1]; r = x*x + y*y; if ( r > Shapes->param.gen.a ) comp_result = 0; break; case annulus_rgn: /* Shift origin to center of region */ x = X - Shapes->param.gen.p[0]; y = Y - Shapes->param.gen.p[1]; r = x*x + y*y; if ( r < Shapes->param.gen.a || r > Shapes->param.gen.b ) comp_result = 0; break; case sector_rgn: /* Shift origin to center of region */ x = X - Shapes->param.gen.p[0]; y = Y - Shapes->param.gen.p[1]; if( x || y ) { r = atan2( y, x ) * RadToDeg; if( Shapes->param.gen.p[2] <= Shapes->param.gen.p[3] ) { if( r < Shapes->param.gen.p[2] || r > Shapes->param.gen.p[3] ) comp_result = 0; } else { if( r < Shapes->param.gen.p[2] && r > Shapes->param.gen.p[3] ) comp_result = 0; } } break; case ellipse_rgn: /* Shift origin to center of region */ xprime = X - Shapes->param.gen.p[0]; yprime = Y - Shapes->param.gen.p[1]; /* Rotate point to region's orientation */ x = xprime * Shapes->param.gen.cosT + yprime * Shapes->param.gen.sinT; y = -xprime * Shapes->param.gen.sinT + yprime * Shapes->param.gen.cosT; x /= Shapes->param.gen.p[2]; y /= Shapes->param.gen.p[3]; r = x*x + y*y; if( r>1.0 ) comp_result = 0; break; case elliptannulus_rgn: /* Shift origin to center of region */ xprime = X - Shapes->param.gen.p[0]; yprime = Y - Shapes->param.gen.p[1]; /* Rotate point to outer ellipse's orientation */ x = xprime * Shapes->param.gen.cosT + yprime * Shapes->param.gen.sinT; y = -xprime * Shapes->param.gen.sinT + yprime * Shapes->param.gen.cosT; x /= Shapes->param.gen.p[4]; y /= Shapes->param.gen.p[5]; r = x*x + y*y; if( r>1.0 ) comp_result = 0; else { /* Repeat test for inner ellipse */ x = xprime * Shapes->param.gen.b + yprime * Shapes->param.gen.a; y = -xprime * Shapes->param.gen.a + yprime * Shapes->param.gen.b; x /= Shapes->param.gen.p[2]; y /= Shapes->param.gen.p[3]; r = x*x + y*y; if( r<1.0 ) comp_result = 0; } break; case line_rgn: /* Shift origin to first point of line */ xprime = X - Shapes->param.gen.p[0]; yprime = Y - Shapes->param.gen.p[1]; /* Rotate point to line's orientation */ x = xprime * Shapes->param.gen.cosT + yprime * Shapes->param.gen.sinT; y = -xprime * Shapes->param.gen.sinT + yprime * Shapes->param.gen.cosT; if( (y < -0.5) || (y >= 0.5) || (x < -0.5) || (x >= Shapes->param.gen.a) ) comp_result = 0; break; case point_rgn: /* Shift origin to center of region */ x = X - Shapes->param.gen.p[0]; y = Y - Shapes->param.gen.p[1]; if ( (x<-0.5) || (x>=0.5) || (y<-0.5) || (y>=0.5) ) comp_result = 0; break; case poly_rgn: if( Xxmin || X>Shapes->xmax || Yymin || Y>Shapes->ymax ) comp_result = 0; else comp_result = Pt_in_Poly( X, Y, Shapes->param.poly.nPts, Shapes->param.poly.Pts ); break; case panda_rgn: /* Shift origin to center of region */ x = X - Shapes->param.gen.p[0]; y = Y - Shapes->param.gen.p[1]; r = x*x + y*y; if ( r < Shapes->param.gen.a || r > Shapes->param.gen.b ) { comp_result = 0; } else { if( x || y ) { th = atan2( y, x ) * RadToDeg; if( Shapes->param.gen.p[2] <= Shapes->param.gen.p[3] ) { if( th < Shapes->param.gen.p[2] || th > Shapes->param.gen.p[3] ) comp_result = 0; } else { if( th < Shapes->param.gen.p[2] && th > Shapes->param.gen.p[3] ) comp_result = 0; } } } break; case epanda_rgn: /* Shift origin to center of region */ xprime = X - Shapes->param.gen.p[0]; yprime = Y - Shapes->param.gen.p[1]; /* Rotate point to region's orientation */ x = xprime * Shapes->param.gen.cosT + yprime * Shapes->param.gen.sinT; y = -xprime * Shapes->param.gen.sinT + yprime * Shapes->param.gen.cosT; xprime = x; yprime = y; /* outer region test */ x = xprime/Shapes->param.gen.p[7]; y = yprime/Shapes->param.gen.p[8]; r = x*x + y*y; if ( r>1.0 ) comp_result = 0; else { /* inner region test */ x = xprime/Shapes->param.gen.p[5]; y = yprime/Shapes->param.gen.p[6]; r = x*x + y*y; if ( r<1.0 ) comp_result = 0; else { /* angle test */ if( xprime || yprime ) { th = atan2( yprime, xprime ) * RadToDeg; if( Shapes->param.gen.p[2] <= Shapes->param.gen.p[3] ) { if( th < Shapes->param.gen.p[2] || th > Shapes->param.gen.p[3] ) comp_result = 0; } else { if( th < Shapes->param.gen.p[2] && th > Shapes->param.gen.p[3] ) comp_result = 0; } } } } break; case bpanda_rgn: /* Shift origin to center of region */ xprime = X - Shapes->param.gen.p[0]; yprime = Y - Shapes->param.gen.p[1]; /* Rotate point to region's orientation */ x = xprime * Shapes->param.gen.cosT + yprime * Shapes->param.gen.sinT; y = -xprime * Shapes->param.gen.sinT + yprime * Shapes->param.gen.cosT; /* outer box test */ dx = 0.5 * Shapes->param.gen.p[7]; dy = 0.5 * Shapes->param.gen.p[8]; if( (x < -dx) || (x > dx) || (y < -dy) || (y > dy) ) comp_result = 0; else { /* inner box test */ dx = 0.5 * Shapes->param.gen.p[5]; dy = 0.5 * Shapes->param.gen.p[6]; if( (x >= -dx) && (x <= dx) && (y >= -dy) && (y <= dy) ) comp_result = 0; else { /* angle test */ if( x || y ) { th = atan2( y, x ) * RadToDeg; if( Shapes->param.gen.p[2] <= Shapes->param.gen.p[3] ) { if( th < Shapes->param.gen.p[2] || th > Shapes->param.gen.p[3] ) comp_result = 0; } else { if( th < Shapes->param.gen.p[2] && th > Shapes->param.gen.p[3] ) comp_result = 0; } } } } break; } if( !Shapes->sign ) comp_result = !comp_result; } } result = result || comp_result; return( result ); } /*---------------------------------------------------------------------------*/ void fits_free_region( SAORegion *Rgn ) /* Free up memory allocated to hold the region data. */ /*---------------------------------------------------------------------------*/ { int i; for( i=0; inShapes; i++ ) if( Rgn->Shapes[i].shape == poly_rgn ) free( Rgn->Shapes[i].param.poly.Pts ); if( Rgn->Shapes ) free( Rgn->Shapes ); free( Rgn ); } /*---------------------------------------------------------------------------*/ static int Pt_in_Poly( double x, double y, int nPts, double *Pts ) /* Internal routine for testing whether the coordinate x,y is within the */ /* polygon region traced out by the array Pts. */ /*---------------------------------------------------------------------------*/ { int i, j, flag=0; double prevX, prevY; double nextX, nextY; double dx, dy, Dy; nextX = Pts[nPts-2]; nextY = Pts[nPts-1]; for( i=0; iprevY && y>=nextY) || (yprevX && x>=nextX) ) continue; /* Check to see if x,y lies right on the segment */ if( x>=prevX || x>nextX ) { dy = y - prevY; Dy = nextY - prevY; if( fabs(Dy)<1e-10 ) { if( fabs(dy)<1e-10 ) return( 1 ); else continue; } dx = prevX + ( (nextX-prevX)/(Dy) ) * dy - x; if( dx < -1e-10 ) continue; if( dx < 1e-10 ) return( 1 ); } /* There is an intersection! Make sure it isn't a V point. */ if( y != prevY ) { flag = 1 - flag; } else { j = i+1; /* Point to Y component */ do { if( j>1 ) j -= 2; else j = nPts-1; } while( y == Pts[j] ); if( (nextY-y)*(y-Pts[j]) > 0 ) flag = 1-flag; } } return( flag ); } /*---------------------------------------------------------------------------*/ void fits_set_region_components ( SAORegion *aRgn ) { /* Internal routine to turn a collection of regions read from an ascii file into the more complex structure that is allowed by the FITS REGION extension with multiple components. Regions are anded within components and ored between them ie for a pixel to be selected it must be selected by at least one component and to be selected by a component it must be selected by all that component's shapes. The algorithm is to replicate every exclude region after every include region before it in the list. eg reg1, reg2, -reg3, reg4, -reg5 becomes (reg1, -reg3, -reg5), (reg2, -reg5, -reg3), (reg4, -reg5) where the parentheses designate components. */ int i, j, k, icomp; /* loop round shapes */ i = 0; while ( inShapes ) { /* first do the case of an exclude region */ if ( !aRgn->Shapes[i].sign ) { /* we need to run back through the list copying the current shape as required. start by findin the first include shape before this exclude */ j = i-1; while ( j > 0 && !aRgn->Shapes[j].sign ) j--; /* then go back one more shape */ j--; /* and loop back through the regions */ while ( j >= 0 ) { /* if this is an include region then insert a copy of the exclude region immediately after it */ if ( aRgn->Shapes[j].sign ) { aRgn->Shapes = (RgnShape *) realloc (aRgn->Shapes,(1+aRgn->nShapes)*sizeof(RgnShape)); aRgn->nShapes++; for (k=aRgn->nShapes-1; k>j+1; k--) aRgn->Shapes[k] = aRgn->Shapes[k-1]; i++; aRgn->Shapes[j+1] = aRgn->Shapes[i]; } j--; } } i++; } /* now set the component numbers */ icomp = 0; for ( i=0; inShapes; i++ ) { if ( aRgn->Shapes[i].sign ) icomp++; aRgn->Shapes[i].comp = icomp; /* printf("i = %d, shape = %d, sign = %d, comp = %d\n", i, aRgn->Shapes[i].shape, aRgn->Shapes[i].sign, aRgn->Shapes[i].comp); */ } return; } /*---------------------------------------------------------------------------*/ void fits_setup_shape ( RgnShape *newShape) { /* Perform some useful calculations now to speed up filter later */ double X, Y, R; double *coords; int i; if ( newShape->shape == poly_rgn ) { coords = newShape->param.poly.Pts; } else { coords = newShape->param.gen.p; } switch( newShape->shape ) { case circle_rgn: newShape->param.gen.a = coords[2] * coords[2]; break; case annulus_rgn: newShape->param.gen.a = coords[2] * coords[2]; newShape->param.gen.b = coords[3] * coords[3]; break; case sector_rgn: while( coords[2]> 180.0 ) coords[2] -= 360.0; while( coords[2]<=-180.0 ) coords[2] += 360.0; while( coords[3]> 180.0 ) coords[3] -= 360.0; while( coords[3]<=-180.0 ) coords[3] += 360.0; break; case ellipse_rgn: newShape->param.gen.sinT = sin( myPI * (coords[4] / 180.0) ); newShape->param.gen.cosT = cos( myPI * (coords[4] / 180.0) ); break; case elliptannulus_rgn: newShape->param.gen.a = sin( myPI * (coords[6] / 180.0) ); newShape->param.gen.b = cos( myPI * (coords[6] / 180.0) ); newShape->param.gen.sinT = sin( myPI * (coords[7] / 180.0) ); newShape->param.gen.cosT = cos( myPI * (coords[7] / 180.0) ); break; case box_rgn: newShape->param.gen.sinT = sin( myPI * (coords[4] / 180.0) ); newShape->param.gen.cosT = cos( myPI * (coords[4] / 180.0) ); break; case boxannulus_rgn: newShape->param.gen.a = sin( myPI * (coords[6] / 180.0) ); newShape->param.gen.b = cos( myPI * (coords[6] / 180.0) ); newShape->param.gen.sinT = sin( myPI * (coords[7] / 180.0) ); newShape->param.gen.cosT = cos( myPI * (coords[7] / 180.0) ); break; case rectangle_rgn: newShape->param.gen.sinT = sin( myPI * (coords[4] / 180.0) ); newShape->param.gen.cosT = cos( myPI * (coords[4] / 180.0) ); X = 0.5 * ( coords[2]-coords[0] ); Y = 0.5 * ( coords[3]-coords[1] ); newShape->param.gen.a = fabs( X * newShape->param.gen.cosT + Y * newShape->param.gen.sinT ); newShape->param.gen.b = fabs( Y * newShape->param.gen.cosT - X * newShape->param.gen.sinT ); newShape->param.gen.p[5] = 0.5 * ( coords[2]+coords[0] ); newShape->param.gen.p[6] = 0.5 * ( coords[3]+coords[1] ); break; case diamond_rgn: newShape->param.gen.sinT = sin( myPI * (coords[4] / 180.0) ); newShape->param.gen.cosT = cos( myPI * (coords[4] / 180.0) ); break; case line_rgn: X = coords[2] - coords[0]; Y = coords[3] - coords[1]; R = sqrt( X*X + Y*Y ); newShape->param.gen.sinT = ( R ? Y/R : 0.0 ); newShape->param.gen.cosT = ( R ? X/R : 1.0 ); newShape->param.gen.a = R + 0.5; break; case panda_rgn: while( coords[2]> 180.0 ) coords[2] -= 360.0; while( coords[2]<=-180.0 ) coords[2] += 360.0; while( coords[3]> 180.0 ) coords[3] -= 360.0; while( coords[3]<=-180.0 ) coords[3] += 360.0; newShape->param.gen.a = newShape->param.gen.p[5]*newShape->param.gen.p[5]; newShape->param.gen.b = newShape->param.gen.p[6]*newShape->param.gen.p[6]; break; case epanda_rgn: case bpanda_rgn: while( coords[2]> 180.0 ) coords[2] -= 360.0; while( coords[2]<=-180.0 ) coords[2] += 360.0; while( coords[3]> 180.0 ) coords[3] -= 360.0; while( coords[3]<=-180.0 ) coords[3] += 360.0; newShape->param.gen.sinT = sin( myPI * (coords[10] / 180.0) ); newShape->param.gen.cosT = cos( myPI * (coords[10] / 180.0) ); break; default: break; } /* Set the xmin, xmax, ymin, ymax elements of the RgnShape structure */ /* For everything which has first two parameters as center position just */ /* find a circle that encompasses the region and use it to set the */ /* bounding box */ R = -1.0; switch ( newShape->shape ) { case circle_rgn: R = coords[2]; break; case annulus_rgn: R = coords[3]; break; case ellipse_rgn: if ( coords[2] > coords[3] ) { R = coords[2]; } else { R = coords[3]; } break; case elliptannulus_rgn: if ( coords[4] > coords[5] ) { R = coords[4]; } else { R = coords[5]; } break; case box_rgn: R = sqrt(coords[2]*coords[2]+ coords[3]*coords[3])/2.0; break; case boxannulus_rgn: R = sqrt(coords[4]*coords[5]+ coords[4]*coords[5])/2.0; break; case diamond_rgn: if ( coords[2] > coords[3] ) { R = coords[2]/2.0; } else { R = coords[3]/2.0; } break; case point_rgn: R = 1.0; break; case panda_rgn: R = coords[6]; break; case epanda_rgn: if ( coords[7] > coords[8] ) { R = coords[7]; } else { R = coords[8]; } break; case bpanda_rgn: R = sqrt(coords[7]*coords[8]+ coords[7]*coords[8])/2.0; break; default: break; } if ( R > 0.0 ) { newShape->xmin = coords[0] - R; newShape->xmax = coords[0] + R; newShape->ymin = coords[1] - R; newShape->ymax = coords[1] + R; return; } /* Now do the rest of the shapes that require individual methods */ switch ( newShape->shape ) { case rectangle_rgn: R = sqrt((coords[5]-coords[0])*(coords[5]-coords[0])+ (coords[6]-coords[1])*(coords[6]-coords[1])); newShape->xmin = coords[5] - R; newShape->xmax = coords[5] + R; newShape->ymin = coords[6] - R; newShape->ymax = coords[6] + R; break; case poly_rgn: newShape->xmin = coords[0]; newShape->xmax = coords[0]; newShape->ymin = coords[1]; newShape->ymax = coords[1]; for( i=2; i < newShape->param.poly.nPts; ) { if( newShape->xmin > coords[i] ) /* Min X */ newShape->xmin = coords[i]; if( newShape->xmax < coords[i] ) /* Max X */ newShape->xmax = coords[i]; i++; if( newShape->ymin > coords[i] ) /* Min Y */ newShape->ymin = coords[i]; if( newShape->ymax < coords[i] ) /* Max Y */ newShape->ymax = coords[i]; i++; } break; case line_rgn: if ( coords[0] > coords[2] ) { newShape->xmin = coords[2]; newShape->xmax = coords[0]; } else { newShape->xmin = coords[0]; newShape->xmax = coords[2]; } if ( coords[1] > coords[3] ) { newShape->ymin = coords[3]; newShape->ymax = coords[1]; } else { newShape->ymin = coords[1]; newShape->ymax = coords[3]; } break; /* sector doesn't have min and max so indicate by setting max < min */ case sector_rgn: newShape->xmin = 1.0; newShape->xmax = -1.0; newShape->ymin = 1.0; newShape->ymax = -1.0; break; default: break; } return; } /*---------------------------------------------------------------------------*/ int fits_read_fits_region ( fitsfile *fptr, WCSdata *wcs, SAORegion **Rgn, int *status) /* Read regions from a FITS region extension and return the information */ /* in the "SAORegion" structure. If it is nonNULL, use wcs to convert the */ /* region coordinates to pixels. Return an error if region is in degrees */ /* but no WCS data is provided. */ /*---------------------------------------------------------------------------*/ { int i, j, icol[6], idum, anynul, npos; int dotransform, got_component = 1, tstatus; long icsize[6]; double X, Y, Theta, Xsave = 0, Ysave = 0, Xpos, Ypos; double *coords; char *cvalue, *cvalue2; char comment[FLEN_COMMENT]; char colname[6][FLEN_VALUE] = {"X", "Y", "SHAPE", "R", "ROTANG", "COMPONENT"}; char shapename[17][FLEN_VALUE] = {"POINT","CIRCLE","ELLIPSE","ANNULUS", "ELLIPTANNULUS","BOX","ROTBOX","BOXANNULUS", "RECTANGLE","ROTRECTANGLE","POLYGON","PIE", "SECTOR","DIAMOND","RHOMBUS","ROTDIAMOND", "ROTRHOMBUS"}; int shapetype[17] = {point_rgn, circle_rgn, ellipse_rgn, annulus_rgn, elliptannulus_rgn, box_rgn, box_rgn, boxannulus_rgn, rectangle_rgn, rectangle_rgn, poly_rgn, sector_rgn, sector_rgn, diamond_rgn, diamond_rgn, diamond_rgn, diamond_rgn}; SAORegion *aRgn; RgnShape *newShape; WCSdata *regwcs = 0; if ( *status ) return( *status ); aRgn = (SAORegion *)malloc( sizeof(SAORegion) ); if( ! aRgn ) { ffpmsg("Couldn't allocate memory to hold Region file contents."); return(*status = MEMORY_ALLOCATION ); } aRgn->nShapes = 0; aRgn->Shapes = NULL; if( wcs && wcs->exists ) aRgn->wcs = *wcs; else aRgn->wcs.exists = 0; /* See if we are already positioned to a region extension, else */ /* move to the REGION extension (file is already open). */ tstatus = 0; for (i=0; i<5; i++) { ffgcno(fptr, CASEINSEN, colname[i], &icol[i], &tstatus); } if (tstatus) { /* couldn't find the required columns, so search for "REGION" extension */ if ( ffmnhd(fptr, BINARY_TBL, "REGION", 1, status) ) { ffpmsg("Could not move to REGION extension."); goto error; } } /* get the number of shapes and allocate memory */ if ( ffgky(fptr, TINT, "NAXIS2", &aRgn->nShapes, comment, status) ) { ffpmsg("Could not read NAXIS2 keyword."); goto error; } aRgn->Shapes = (RgnShape *) malloc(aRgn->nShapes * sizeof(RgnShape)); if ( !aRgn->Shapes ) { ffpmsg( "Failed to allocate memory for Region data"); *status = MEMORY_ALLOCATION; goto error; } /* get the required column numbers */ for (i=0; i<5; i++) { if ( ffgcno(fptr, CASEINSEN, colname[i], &icol[i], status) ) { ffpmsg("Could not find column."); goto error; } } /* try to get the optional column numbers */ if ( ffgcno(fptr, CASEINSEN, colname[5], &icol[5], status) ) { got_component = 0; } /* if there was input WCS then read the WCS info for the region in case they */ /* are different and we have to transform */ dotransform = 0; if ( aRgn->wcs.exists ) { regwcs = (WCSdata *) malloc ( sizeof(WCSdata) ); if ( !regwcs ) { ffpmsg( "Failed to allocate memory for Region WCS data"); *status = MEMORY_ALLOCATION; goto error; } regwcs->exists = 1; if ( ffgtcs(fptr, icol[0], icol[1], ®wcs->xrefval, ®wcs->yrefval, ®wcs->xrefpix, ®wcs->yrefpix, ®wcs->xinc, ®wcs->yinc, ®wcs->rot, regwcs->type, status) ) { regwcs->exists = 0; *status = 0; } if ( regwcs->exists && wcs->exists ) { if ( fabs(regwcs->xrefval-wcs->xrefval) > 1.0e-6 || fabs(regwcs->yrefval-wcs->yrefval) > 1.0e-6 || fabs(regwcs->xrefpix-wcs->xrefpix) > 1.0e-6 || fabs(regwcs->yrefpix-wcs->yrefpix) > 1.0e-6 || fabs(regwcs->xinc-wcs->xinc) > 1.0e-6 || fabs(regwcs->yinc-wcs->yinc) > 1.0e-6 || fabs(regwcs->rot-wcs->rot) > 1.0e-6 || !strcmp(regwcs->type,wcs->type) ) dotransform = 1; } } /* get the sizes of the X, Y, R, and ROTANG vectors */ for (i=0; i<6; i++) { if ( ffgtdm(fptr, icol[i], 1, &idum, &icsize[i], status) ) { ffpmsg("Could not find vector size of column."); goto error; } } cvalue = (char *) malloc ((FLEN_VALUE+1)*sizeof(char)); /* loop over the shapes - note 1-based counting for rows in FITS files */ for (i=1; i<=aRgn->nShapes; i++) { newShape = &aRgn->Shapes[i-1]; for (j=0; j<8; j++) newShape->param.gen.p[j] = 0.0; newShape->param.gen.a = 0.0; newShape->param.gen.b = 0.0; newShape->param.gen.sinT = 0.0; newShape->param.gen.cosT = 0.0; /* get the shape */ if ( ffgcvs(fptr, icol[2], i, 1, 1, " ", &cvalue, &anynul, status) ) { ffpmsg("Could not read shape."); goto error; } /* set include or exclude */ newShape->sign = 1; cvalue2 = cvalue; if ( !strncmp(cvalue,"!",1) ) { newShape->sign = 0; cvalue2++; } /* set the shape type */ for (j=0; j<9; j++) { if ( !strcmp(cvalue2, shapename[j]) ) newShape->shape = shapetype[j]; } /* allocate memory for polygon case and set coords pointer */ if ( newShape->shape == poly_rgn ) { newShape->param.poly.Pts = (double *) calloc (2*icsize[0], sizeof(double)); if ( !newShape->param.poly.Pts ) { ffpmsg("Could not allocate memory to hold polygon parameters" ); *status = MEMORY_ALLOCATION; goto error; } newShape->param.poly.nPts = 2*icsize[0]; coords = newShape->param.poly.Pts; } else { coords = newShape->param.gen.p; } /* read X and Y. Polygon and Rectangle require special cases */ npos = 1; if ( newShape->shape == poly_rgn ) npos = newShape->param.poly.nPts/2; if ( newShape->shape == rectangle_rgn ) npos = 2; for (j=0; jparam.poly.nPts = npos * 2; break; } coords++; if ( ffgcvd(fptr, icol[1], i, j+1, 1, DOUBLENULLVALUE, coords, &anynul, status) ) { ffpmsg("Failed to read Y column for polygon region"); goto error; } if (*coords == DOUBLENULLVALUE) { /* check for null value end of array marker */ npos = j; newShape->param.poly.nPts = npos * 2; coords--; break; } coords++; if (j == 0) { /* save the first X and Y coordinate */ Xsave = *(coords - 2); Ysave = *(coords - 1); } else if ((Xsave == *(coords - 2)) && (Ysave == *(coords - 1)) ) { /* if point has same coordinate as first point, this marks the end of the array */ npos = j + 1; newShape->param.poly.nPts = npos * 2; break; } } /* transform positions if the region and input wcs differ */ if ( dotransform ) { coords -= npos*2; Xsave = coords[0]; Ysave = coords[1]; for (j=0; jxrefval, regwcs->yrefval, regwcs->xrefpix, regwcs->yrefpix, regwcs->xinc, regwcs->yinc, regwcs->rot, regwcs->type, &Xpos, &Ypos, status); ffxypx(Xpos, Ypos, wcs->xrefval, wcs->yrefval, wcs->xrefpix, wcs->yrefpix, wcs->xinc, wcs->yinc, wcs->rot, wcs->type, &coords[2*j], &coords[2*j+1], status); if ( *status ) { ffpmsg("Failed to transform coordinates"); goto error; } } coords += npos*2; } /* read R. Circle requires one number; Box, Diamond, Ellipse, Annulus, Sector and Panda two; Boxannulus and Elliptannulus four; Point, Rectangle and Polygon none. */ npos = 0; switch ( newShape->shape ) { case circle_rgn: npos = 1; break; case box_rgn: case diamond_rgn: case ellipse_rgn: case annulus_rgn: case sector_rgn: npos = 2; break; case boxannulus_rgn: case elliptannulus_rgn: npos = 4; break; default: break; } if ( npos > 0 ) { if ( ffgcvd(fptr, icol[3], i, 1, npos, 0.0, coords, &anynul, status) ) { ffpmsg("Failed to read R column for region"); goto error; } /* transform lengths if the region and input wcs differ */ if ( dotransform ) { for (j=0; jxrefval, regwcs->yrefval, regwcs->xrefpix, regwcs->yrefpix, regwcs->xinc, regwcs->yinc, regwcs->rot, regwcs->type, &Xpos, &Ypos, status); ffxypx(Xpos, Ypos, wcs->xrefval, wcs->yrefval, wcs->xrefpix, wcs->yrefpix, wcs->xinc, wcs->yinc, wcs->rot, wcs->type, &X, &Y, status); if ( *status ) { ffpmsg("Failed to transform coordinates"); goto error; } *(coords++) = sqrt(pow(X-newShape->param.gen.p[0],2)+pow(Y-newShape->param.gen.p[1],2)); } } else { coords += npos; } } /* read ROTANG. Requires two values for Boxannulus, Elliptannulus, Sector, Panda; one for Box, Diamond, Ellipse; and none for Circle, Point, Annulus, Rectangle, Polygon */ npos = 0; switch ( newShape->shape ) { case box_rgn: case diamond_rgn: case ellipse_rgn: npos = 1; break; case boxannulus_rgn: case elliptannulus_rgn: case sector_rgn: npos = 2; break; default: break; } if ( npos > 0 ) { if ( ffgcvd(fptr, icol[4], i, 1, npos, 0.0, coords, &anynul, status) ) { ffpmsg("Failed to read ROTANG column for region"); goto error; } /* transform angles if the region and input wcs differ */ if ( dotransform ) { Theta = (wcs->rot) - (regwcs->rot); for (j=0; jcomp, &anynul, status) ) { ffpmsg("Failed to read COMPONENT column for region"); goto error; } } else { newShape->comp = 1; } /* do some precalculations to speed up tests */ fits_setup_shape(newShape); /* end loop over shapes */ } error: if( *status ) fits_free_region( aRgn ); else *Rgn = aRgn; ffclos(fptr, status); return( *status ); } healpy-1.8.1/cfitsio/iter_var.c0000654000175000017530000000636712272000775017050 0ustar zoncaplanck00000000000000#include #include #include #include "fitsio.h" /* This program illustrates how to use the CFITSIO iterator function. It reads and modifies the input 'iter_a.fit' file by computing a value for the 'rate' column as a function of the values in the other 'counts' and 'time' columns. */ main() { extern flux_rate(); /* external work function is passed to the iterator */ fitsfile *fptr; iteratorCol cols[3]; /* structure used by the iterator function */ int n_cols; long rows_per_loop, offset; int status, nkeys, keypos, hdutype, ii, jj; char filename[] = "vari.fits"; /* name of rate FITS file */ status = 0; fits_open_file(&fptr, filename, READWRITE, &status); /* open file */ /* move to the desired binary table extension */ if (fits_movnam_hdu(fptr, BINARY_TBL, "COMPRESSED_IMAGE", 0, &status) ) fits_report_error(stderr, status); /* print out error messages */ n_cols = 1; /* number of columns */ /* define input column structure members for the iterator function */ fits_iter_set_by_name(&cols[0], fptr, "COMPRESSED_DATA", 0, InputCol); rows_per_loop = 0; /* use default optimum number of rows */ offset = 0; /* process all the rows */ /* apply the rate function to each row of the table */ printf("Calling iterator function...%d\n", status); fits_iterate_data(n_cols, cols, offset, rows_per_loop, flux_rate, 0L, &status); fits_close_file(fptr, &status); /* all done */ if (status) fits_report_error(stderr, status); /* print out error messages */ return(status); } /*--------------------------------------------------------------------------*/ int flux_rate(long totalrows, long offset, long firstrow, long nrows, int ncols, iteratorCol *cols, void *user_strct ) /* Sample iterator function that calculates the output flux 'rate' column by dividing the input 'counts' by the 'time' column. It also applies a constant deadtime correction factor if the 'deadtime' keyword exists. Finally, this creates or updates the 'LIVETIME' keyword with the sum of all the individual integration times. */ { int ii, status = 0; long repeat; /* declare variables static to preserve their values between calls */ static unsigned char *counts; /*--------------------------------------------------------*/ /* Initialization procedures: execute on the first call */ /*--------------------------------------------------------*/ if (firstrow == 1) { printf("Datatype of column = %d\n",fits_iter_get_datatype(&cols[0])); /* assign the input pointers to the appropriate arrays and null ptrs*/ counts = (long *) fits_iter_get_array(&cols[0]); } /*--------------------------------------------*/ /* Main loop: process all the rows of data */ /*--------------------------------------------*/ /* NOTE: 1st element of array is the null pixel value! */ /* Loop from 1 to nrows, not 0 to nrows - 1. */ for (ii = 1; ii <= nrows; ii++) { repeat = fits_iter_get_repeat(&cols[0]); printf ("repeat = %d, %d\n",repeat, counts[1]); } return(0); /* return successful status */ } healpy-1.8.1/cfitsio/f77_wrap1.c0000654000175000017530000003032112272000775016735 0ustar zoncaplanck00000000000000/************************************************************************ f77_wrap1.c and f77_wrap2.c have now been split into 4 files to prevent compile-time memory errors (from expansion of compiler commands). f77_wrap1.c was split into f77_wrap1.c and f77_wrap3.c, and f77_wrap2.c was split into f77_wrap2.c and f77_wrap4.c: f77_wrap1.c contains routines operating on whole files and some utility routines. f77_wrap2.c contains routines operating on primary array, image, or column elements. f77_wrap3.c contains routines operating on headers & keywords. f77_wrap4.c contains miscellaneous routines. Peter's original comments: Together, f77_wrap1.c and f77_wrap2.c contain C wrappers for all the CFITSIO routines prototyped in fitsio.h, except for the generic datatype routines and features not supported in fortran (eg, unsigned integers), a few routines prototyped in fitsio2.h, which only a handful of FTOOLS use, plus a few obsolete FITSIO routines not present in CFITSIO. This file allows Fortran code to use the CFITSIO library instead of the FITSIO library without modification. It also gives access to new routines not present in FITSIO. Fortran FTOOLS must continue using the old routine names from FITSIO (ie, ftxxxx), but most of the C-wrappers simply redirect those calls to the corresponding CFITSIO routines (ie, ffxxxx), with appropriate parameter massaging where necessary. The main exception are read/write routines ending in j (ie, long data) which get redirected to C routines ending in k (ie, int data). This is more consistent with the default integer type in Fortran. f77_wrap1.c primarily holds routines operating on whole files and extension headers. f77_wrap2.c handle routines which read and write the data portion, plus miscellaneous extra routines. File created by Peter Wilson (HSTX), Oct-Dec. 1997 ************************************************************************/ #include "fitsio2.h" #include "f77_wrap.h" unsigned long gMinStrLen=80L; fitsfile *gFitsFiles[NMAXFILES]={0}; /*---------------- Fortran Unit Number Allocation -------------*/ void Cffgiou( int *unit, int *status ); void Cffgiou( int *unit, int *status ) { int i; if( *status>0 ) return; for( i=50;i0 ) return; if( unit == -1 ) { int i; for( i=50; i=NMAXFILES ) { *status = BAD_FILEPTR; ffpmsg("Cfffiou was sent an unacceptable unit number."); } else gFitsFiles[unit]=NULL; } FCALLSCSUB2(Cfffiou,FTFIOU,ftfiou,INT,PINT) int CFITS2Unit( fitsfile *fptr ) /* Utility routine to convert a fitspointer to a Fortran unit number */ /* for use when a C program is calling a Fortran routine which could */ /* in turn call CFITSIO... Modelled after code by Ning Gan. */ { static fitsfile *last_fptr = (fitsfile *)NULL; /* Remember last fptr */ static int last_unit = 0; /* Remember last unit */ int status = 0; /* Test whether we are repeating the last lookup */ if( last_unit && fptr==gFitsFiles[last_unit] ) return( last_unit ); /* Check if gFitsFiles has an entry for this fptr. */ /* Allows Fortran to call C to call Fortran to */ /* call CFITSIO... OUCH!!! */ last_fptr = fptr; for( last_unit=1; last_unit=NMAXFILES ) return(0); return(gFitsFiles[unit]); } /**************************************************/ /* Start of wrappers for routines in fitsio.h */ /**************************************************/ /*---------------- FITS file URL parsing routines -------------*/ FCALLSCSUB9(ffiurl,FTIURL,ftiurl,STRING,PSTRING,PSTRING,PSTRING,PSTRING,PSTRING,PSTRING,PSTRING,PINT) FCALLSCSUB3(ffrtnm,FTRTNM,ftrtnm,STRING,PSTRING,PINT) FCALLSCSUB3(ffexist,FTEXIST,ftexist,STRING,PINT,PINT) FCALLSCSUB3(ffextn,FTEXTN,ftextn,STRING,PINT,PINT) FCALLSCSUB7(ffrwrg,FTRWRG,ftrwrg,STRING,LONG,INT,PINT,PLONG,PLONG,PINT) /*---------------- FITS file I/O routines ---------------*/ void Cffopen( fitsfile **fptr, const char *filename, int iomode, int *blocksize, int *status ); void Cffopen( fitsfile **fptr, const char *filename, int iomode, int *blocksize, int *status ) { int hdutype; if( *fptr==NULL || *fptr==(fitsfile*)1 ) { ffopen( fptr, filename, iomode, status ); ffmahd( *fptr, 1, &hdutype, status ); *blocksize = 1; } else { *status = FILE_NOT_OPENED; ffpmsg("Cffopen tried to use an already opened unit."); } } FCALLSCSUB5(Cffopen,FTOPEN,ftopen,PFITSUNIT,STRING,INT,PINT,PINT) void Cffdkopn( fitsfile **fptr, const char *filename, int iomode, int *blocksize, int *status ); void Cffdkopn( fitsfile **fptr, const char *filename, int iomode, int *blocksize, int *status ) { int hdutype; if( *fptr==NULL || *fptr==(fitsfile*)1 ) { ffdkopn( fptr, filename, iomode, status ); ffmahd( *fptr, 1, &hdutype, status ); *blocksize = 1; } else { *status = FILE_NOT_OPENED; ffpmsg("Cffdkopn tried to use an already opened unit."); } } FCALLSCSUB5(Cffdkopn,FTDKOPN,ftdkopn,PFITSUNIT,STRING,INT,PINT,PINT) void Cffnopn( fitsfile **fptr, const char *filename, int iomode, int *status ); void Cffnopn( fitsfile **fptr, const char *filename, int iomode, int *status ) { if( *fptr==NULL || *fptr==(fitsfile*)1 ) { ffopen( fptr, filename, iomode, status ); } else { *status = FILE_NOT_OPENED; ffpmsg("Cffnopn tried to use an already opened unit."); } } FCALLSCSUB4(Cffnopn,FTNOPN,ftnopn,PFITSUNIT,STRING,INT,PINT) void Cffdopn( fitsfile **fptr, const char *filename, int iomode, int *status ); void Cffdopn( fitsfile **fptr, const char *filename, int iomode, int *status ) { if( *fptr==NULL || *fptr==(fitsfile*)1 ) { ffdopn( fptr, filename, iomode, status ); } else { *status = FILE_NOT_OPENED; ffpmsg("Cffdopn tried to use an already opened unit."); } } FCALLSCSUB4(Cffdopn,FTDOPN,ftdopn,PFITSUNIT,STRING,INT,PINT) void Cfftopn( fitsfile **fptr, const char *filename, int iomode, int *status ); void Cfftopn( fitsfile **fptr, const char *filename, int iomode, int *status ) { if( *fptr==NULL || *fptr==(fitsfile*)1 ) { fftopn( fptr, filename, iomode, status ); } else { *status = FILE_NOT_OPENED; ffpmsg("Cfftopn tried to use an already opened unit."); } } FCALLSCSUB4(Cfftopn,FTTOPN,fttopn,PFITSUNIT,STRING,INT,PINT) void Cffiopn( fitsfile **fptr, const char *filename, int iomode, int *status ); void Cffiopn( fitsfile **fptr, const char *filename, int iomode, int *status ) { if( *fptr==NULL || *fptr==(fitsfile*)1 ) { ffiopn( fptr, filename, iomode, status ); } else { *status = FILE_NOT_OPENED; ffpmsg("Cffiopn tried to use an already opened unit."); } } FCALLSCSUB4(Cffiopn,FTIOPN,ftiopn,PFITSUNIT,STRING,INT,PINT) void Cffreopen( fitsfile *openfptr, fitsfile **newfptr, int *status ); void Cffreopen( fitsfile *openfptr, fitsfile **newfptr, int *status ) { if( *newfptr==NULL || *newfptr==(fitsfile*)1 ) { ffreopen( openfptr, newfptr, status ); } else { *status = FILE_NOT_OPENED; ffpmsg("Cffreopen tried to use an already opened unit."); } } FCALLSCSUB3(Cffreopen,FTREOPEN,ftreopen,FITSUNIT,PFITSUNIT,PINT) void Cffinit( fitsfile **fptr, const char *filename, int blocksize, int *status ); void Cffinit( fitsfile **fptr, const char *filename, int blocksize, int *status ) { if( *fptr==NULL || *fptr==(fitsfile*)1 ) { ffinit( fptr, filename, status ); } else { *status = FILE_NOT_CREATED; ffpmsg("Cffinit tried to use an already opened unit."); } } FCALLSCSUB4(Cffinit,FTINIT,ftinit,PFITSUNIT,STRING,INT,PINT) void Cffdkinit( fitsfile **fptr, const char *filename, int blocksize, int *status ); void Cffdkinit( fitsfile **fptr, const char *filename, int blocksize, int *status ) { if( *fptr==NULL || *fptr==(fitsfile*)1 ) { ffdkinit( fptr, filename, status ); } else { *status = FILE_NOT_CREATED; ffpmsg("Cffdkinit tried to use an already opened unit."); } } FCALLSCSUB4(Cffdkinit,FTDKINIT,ftdkinit,PFITSUNIT,STRING,INT,PINT) void Cfftplt( fitsfile **fptr, const char *filename, const char *tempname, int *status ); void Cfftplt( fitsfile **fptr, const char *filename, const char *tempname, int *status ) { if( *fptr==NULL || *fptr==(fitsfile*)1 ) { fftplt( fptr, filename, tempname, status ); } else { *status = FILE_NOT_CREATED; ffpmsg("Cfftplt tried to use an already opened unit."); } } FCALLSCSUB4(Cfftplt,FTTPLT,fttplt,PFITSUNIT,STRING,STRING,PINT) FCALLSCSUB2(ffflus,FTFLUS,ftflus,FITSUNIT,PINT) FCALLSCSUB3(ffflsh,FTFLSH,ftflsh,FITSUNIT, INT, PINT) void Cffclos( int unit, int *status ); void Cffclos( int unit, int *status ) { if( gFitsFiles[unit]!=NULL && gFitsFiles[unit]!=(void*)1 ) { ffclos( gFitsFiles[unit], status ); /* Flag unit number as unavailable */ gFitsFiles[unit]=(fitsfile*)1; /* in case want to reuse it */ } } FCALLSCSUB2(Cffclos,FTCLOS,ftclos,INT,PINT) void Cffdelt( int unit, int *status ); void Cffdelt( int unit, int *status ) { if( gFitsFiles[unit]!=NULL && gFitsFiles[unit]!=(void*)1 ) { ffdelt( gFitsFiles[unit], status ); /* Flag unit number as unavailable */ gFitsFiles[unit]=(fitsfile*)1; /* in case want to reuse it */ } } FCALLSCSUB2(Cffdelt,FTDELT,ftdelt,INT,PINT) FCALLSCSUB3(ffflnm,FTFLNM,ftflnm,FITSUNIT,PSTRING,PINT) FCALLSCSUB3(ffflmd,FTFLMD,ftflmd,FITSUNIT,PINT,PINT) /*--------------- utility routines ---------------*/ FCALLSCSUB1(ffvers,FTVERS,ftvers,PFLOAT) FCALLSCSUB1(ffupch,FTUPCH,ftupch,PSTRING) FCALLSCSUB2(ffgerr,FTGERR,ftgerr,INT,PSTRING) FCALLSCSUB1(ffpmsg,FTPMSG,ftpmsg,STRING) FCALLSCSUB1(ffgmsg,FTGMSG,ftgmsg,PSTRING) FCALLSCSUB0(ffcmsg,FTCMSG,ftcmsg) FCALLSCSUB0(ffpmrk,FTPMRK,ftpmrk) FCALLSCSUB0(ffcmrk,FTCMRK,ftcmrk) void Cffrprt( char *fname, int status ); void Cffrprt( char *fname, int status ) { if( !strcmp(fname,"STDOUT") || !strcmp(fname,"stdout") ) ffrprt( stdout, status ); else if( !strcmp(fname,"STDERR") || !strcmp(fname,"stderr") ) ffrprt( stderr, status ); else { FILE *fptr; fptr = fopen(fname, "a"); if (fptr==NULL) printf("file pointer is null.\n"); else { ffrprt(fptr,status); fclose(fptr); } } } FCALLSCSUB2(Cffrprt,FTRPRT,ftrprt,STRING,INT) FCALLSCSUB5(ffcmps,FTCMPS,ftcmps,STRING,STRING,LOGICAL,PLOGICAL,PLOGICAL) FCALLSCSUB2(fftkey,FTTKEY,fttkey,STRING,PINT) FCALLSCSUB2(fftrec,FTTREC,fttrec,STRING,PINT) FCALLSCSUB2(ffnchk,FTNCHK,ftnchk,FITSUNIT,PINT) FCALLSCSUB4(ffkeyn,FTKEYN,ftkeyn,STRING,INT,PSTRING,PINT) FCALLSCSUB4(ffgknm,FTGKNM,ftgknm,STRING,PSTRING, PINT, PINT) FCALLSCSUB4(ffnkey,FTNKEY,ftnkey,INT,STRING,PSTRING,PINT) FCALLSCSUB3(ffdtyp,FTDTYP,ftdtyp,STRING,PSTRING,PINT) FCALLSCFUN1(INT,ffgkcl,FTGKCL,ftgkcl,STRING) FCALLSCSUB5(ffmkky,FTMKKY,ftmkky,STRING,STRING,STRING,PSTRING,PINT) FCALLSCSUB4(ffpsvc,FTPSVC,ftpsvc,STRING,PSTRING,PSTRING,PINT) FCALLSCSUB4(ffgthd,FTGTHD,ftgthd,STRING,PSTRING,PINT,PINT) FCALLSCSUB5(ffasfm,FTASFM,ftasfm,STRING,PINT,PLONG,PINT,PINT) FCALLSCSUB5(ffbnfm,FTBNFM,ftbnfm,STRING,PINT,PLONG,PLONG,PINT) #define ftgabc_STRV_A2 NUM_ELEM_ARG(1) #define ftgabc_LONGV_A5 A1 FCALLSCSUB6(ffgabc,FTGABC,ftgabc,INT,STRINGV,INT,PLONG,LONGV,PINT) healpy-1.8.1/cfitsio/drvrfile.c0000654000175000017530000006700012272000775017041 0ustar zoncaplanck00000000000000/* This file, drvrfile.c contains driver routines for disk files. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include "fitsio2.h" #include "group.h" /* needed for fits_get_cwd in file_create */ #if defined(unix) || defined(__unix__) || defined(__unix) #include /* needed in file_openfile */ #ifdef REPLACE_LINKS #include #include #endif #endif #ifdef HAVE_FTRUNCATE #if defined(unix) || defined(__unix__) || defined(__unix) #include /* needed for getcwd prototype on unix machines */ #endif #endif #define IO_SEEK 0 /* last file I/O operation was a seek */ #define IO_READ 1 /* last file I/O operation was a read */ #define IO_WRITE 2 /* last file I/O operation was a write */ static char file_outfile[FLEN_FILENAME]; typedef struct /* structure containing disk file structure */ { FILE *fileptr; LONGLONG currentpos; int last_io_op; } diskdriver; static diskdriver handleTable[NMAXFILES]; /* allocate diskfile handle tables */ /*--------------------------------------------------------------------------*/ int file_init(void) { int ii; for (ii = 0; ii < NMAXFILES; ii++) /* initialize all empty slots in table */ { handleTable[ii].fileptr = 0; } return(0); } /*--------------------------------------------------------------------------*/ int file_setoptions(int options) { /* do something with the options argument, to stop compiler warning */ options = 0; return(options); } /*--------------------------------------------------------------------------*/ int file_getoptions(int *options) { *options = 0; return(0); } /*--------------------------------------------------------------------------*/ int file_getversion(int *version) { *version = 10; return(0); } /*--------------------------------------------------------------------------*/ int file_shutdown(void) { return(0); } /*--------------------------------------------------------------------------*/ int file_open(char *filename, int rwmode, int *handle) { FILE *diskfile; int copyhandle, ii, status; char recbuf[2880]; size_t nread; /* if an output filename has been specified as part of the input file, as in "inputfile.fits(outputfile.fit)" then we have to create the output file, copy the input to it, then reopen the the new copy. */ if (*file_outfile) { /* open the original file, with readonly access */ status = file_openfile(filename, READONLY, &diskfile); if (status) { file_outfile[0] = '\0'; return(status); } /* create the output file */ status = file_create(file_outfile,handle); if (status) { ffpmsg("Unable to create output file for copy of input file:"); ffpmsg(file_outfile); file_outfile[0] = '\0'; return(status); } /* copy the file from input to output */ while(0 != (nread = fread(recbuf,1,2880, diskfile))) { status = file_write(*handle, recbuf, nread); if (status) { file_outfile[0] = '\0'; return(status); } } /* close both files */ fclose(diskfile); copyhandle = *handle; file_close(*handle); *handle = copyhandle; /* reuse the old file handle */ /* reopen the new copy, with correct rwmode */ status = file_openfile(file_outfile, rwmode, &diskfile); file_outfile[0] = '\0'; } else { *handle = -1; for (ii = 0; ii < NMAXFILES; ii++) /* find empty slot in table */ { if (handleTable[ii].fileptr == 0) { *handle = ii; break; } } if (*handle == -1) return(TOO_MANY_FILES); /* too many files opened */ /*open the file */ status = file_openfile(filename, rwmode, &diskfile); } handleTable[*handle].fileptr = diskfile; handleTable[*handle].currentpos = 0; handleTable[*handle].last_io_op = IO_SEEK; return(status); } /*--------------------------------------------------------------------------*/ int file_openfile(char *filename, int rwmode, FILE **diskfile) /* lowest level routine to physically open a disk file */ { char mode[4]; #if defined(unix) || defined(__unix__) || defined(__unix) char tempname[1024], *cptr, user[80]; struct passwd *pwd; int ii = 0; #if defined(REPLACE_LINKS) struct stat stbuf; int success = 0; size_t n; FILE *f1, *f2; char buf[BUFSIZ]; #endif #endif if (rwmode == READWRITE) { strcpy(mode, "r+b"); /* open existing file with read-write */ } else { strcpy(mode, "rb"); /* open existing file readonly */ } #if MACHINE == ALPHAVMS || MACHINE == VAXVMS /* specify VMS record structure: fixed format, 2880 byte records */ /* but force stream mode access to enable random I/O access */ *diskfile = fopen(filename, mode, "rfm=fix", "mrs=2880", "ctx=stm"); #elif defined(unix) || defined(__unix__) || defined(__unix) /* support the ~user/file.fits or ~/file.fits filenames in UNIX */ if (*filename == '~') { if (filename[1] == '/') { cptr = getenv("HOME"); if (cptr) { if (strlen(cptr) + strlen(filename+1) > 1023) return(FILE_NOT_OPENED); strcpy(tempname, cptr); strcat(tempname, filename+1); } else { if (strlen(filename) > 1023) return(FILE_NOT_OPENED); strcpy(tempname, filename); } } else { /* copy user name */ cptr = filename+1; while (*cptr && (*cptr != '/')) { user[ii] = *cptr; cptr++; ii++; } user[ii] = '\0'; /* get structure that includes name of user's home directory */ pwd = getpwnam(user); /* copy user's home directory */ if (strlen(pwd->pw_dir) + strlen(cptr) > 1023) return(FILE_NOT_OPENED); strcpy(tempname, pwd->pw_dir); strcat(tempname, cptr); } *diskfile = fopen(tempname, mode); } else { /* don't need to expand the input file name */ *diskfile = fopen(filename, mode); #if defined(REPLACE_LINKS) if (!(*diskfile) && (rwmode == READWRITE)) { /* failed to open file with READWRITE privilege. Test if */ /* the file we are trying to open is a soft link to a file that */ /* doesn't have write privilege. */ lstat(filename, &stbuf); if ((stbuf.st_mode & S_IFMT) == S_IFLNK) /* is this a soft link? */ { if ((f1 = fopen(filename, "rb")) != 0) /* try opening READONLY */ { if (strlen(filename) + 7 > 1023) return(FILE_NOT_OPENED); strcpy(tempname, filename); strcat(tempname, ".TmxFil"); if ((f2 = fopen(tempname, "wb")) != 0) /* create temp file */ { success = 1; while ((n = fread(buf, 1, BUFSIZ, f1)) > 0) { /* copy linked file to local temporary file */ if (fwrite(buf, 1, n, f2) != n) { success = 0; break; } } fclose(f2); } fclose(f1); if (success) { /* delete link and rename temp file to previous link name */ remove(filename); rename(tempname, filename); /* try once again to open the file with write access */ *diskfile = fopen(filename, mode); } else remove(tempname); /* clean up the failed copy */ } } } #endif } #else /* other non-UNIX machines */ *diskfile = fopen(filename, mode); #endif if (!(*diskfile)) /* couldn't open file */ { return(FILE_NOT_OPENED); } return(0); } /*--------------------------------------------------------------------------*/ int file_create(char *filename, int *handle) { FILE *diskfile; int ii; char mode[4]; int status = 0, rootlen, rootlen2, slen; char *cptr, *cpos; char cwd[FLEN_FILENAME], absURL[FLEN_FILENAME]; char rootstring[256], rootstring2[256]; char username[FLEN_FILENAME], userroot[FLEN_FILENAME], userroot2[FLEN_FILENAME]; cptr = getenv("HERA_DATA_DIRECTORY"); if (cptr) { /* This environment variable is defined in the Hera data analysis environment. */ /* It specifies the root directory path to the users data directories. */ /* CFITSIO will verify that the path to the file that is to be created */ /* is within this root directory + the user's home directory name. */ /* printf("env = %s\n",cptr); */ if (strlen(cptr) > 200) /* guard against possible string overflows */ return(FILE_NOT_CREATED); /* environment variable has the form "path/one/;/path/two/" where the */ /* second path is optional */ strcpy(rootstring, cptr); cpos = strchr(rootstring, ';'); if (cpos) { *cpos = '\0'; cpos++; strcpy(rootstring2, cpos); } else { *rootstring2 = '\0'; } /* printf("%s, %s\n", rootstring, rootstring2); printf("CWD = %s\n", cwd); printf("rootstring=%s, cwd=%s.\n", rootstring, cwd); */ /* Get the current working directory */ fits_get_cwd(cwd, &status); slen = strlen(cwd); if (cwd[slen-1] != '/') strcat(cwd,"/"); /* make sure the CWD ends with slash */ /* check that CWD string matches the rootstring */ rootlen = strlen(rootstring); if (strncmp(rootstring, cwd, rootlen)) { ffpmsg("invalid CWD: does not match root data directory"); return(FILE_NOT_CREATED); } else { /* get the user name from CWD (it follows the root string) */ strncpy(username, cwd+rootlen, 50); /* limit length of user name */ cpos=strchr(username, '/'); if (!cpos) { ffpmsg("invalid CWD: not equal to root data directory + username"); return(FILE_NOT_CREATED); } else { *(cpos+1) = '\0'; /* truncate user name string */ /* construct full user root name */ strcpy(userroot, rootstring); strcat(userroot, username); rootlen = strlen(userroot); /* construct alternate full user root name */ strcpy(userroot2, rootstring2); strcat(userroot2, username); rootlen2 = strlen(userroot2); /* convert the input filename to absolute path relative to the CWD */ fits_relurl2url(cwd, filename, absURL, &status); /* printf("username = %s\n", username); printf("userroot = %s\n", userroot); printf("userroot2 = %s\n", userroot2); printf("filename = %s\n", filename); printf("ABS = %s\n", absURL); */ /* check that CWD string matches the rootstring or alternate root string */ if ( strncmp(userroot, absURL, rootlen) && strncmp(userroot2, absURL, rootlen2) ) { ffpmsg("invalid filename: path not within user directory"); return(FILE_NOT_CREATED); } } } /* if we got here, then the input filename appears to be valid */ } *handle = -1; for (ii = 0; ii < NMAXFILES; ii++) /* find empty slot in table */ { if (handleTable[ii].fileptr == 0) { *handle = ii; break; } } if (*handle == -1) return(TOO_MANY_FILES); /* too many files opened */ strcpy(mode, "w+b"); /* create new file with read-write */ diskfile = fopen(filename, "r"); /* does file already exist? */ if (diskfile) { fclose(diskfile); /* close file and exit with error */ return(FILE_NOT_CREATED); } #if MACHINE == ALPHAVMS || MACHINE == VAXVMS /* specify VMS record structure: fixed format, 2880 byte records */ /* but force stream mode access to enable random I/O access */ diskfile = fopen(filename, mode, "rfm=fix", "mrs=2880", "ctx=stm"); #else diskfile = fopen(filename, mode); #endif if (!(diskfile)) /* couldn't create file */ { return(FILE_NOT_CREATED); } handleTable[ii].fileptr = diskfile; handleTable[ii].currentpos = 0; handleTable[ii].last_io_op = IO_SEEK; return(0); } /*--------------------------------------------------------------------------*/ int file_truncate(int handle, LONGLONG filesize) /* truncate the diskfile to a new smaller size */ { #ifdef HAVE_FTRUNCATE int fdesc; fdesc = fileno(handleTable[handle].fileptr); ftruncate(fdesc, (OFF_T) filesize); file_seek(handle, filesize); handleTable[handle].currentpos = filesize; handleTable[handle].last_io_op = IO_SEEK; #endif return(0); } /*--------------------------------------------------------------------------*/ int file_size(int handle, LONGLONG *filesize) /* return the size of the file in bytes */ { OFF_T position1,position2; FILE *diskfile; diskfile = handleTable[handle].fileptr; #if defined(_MSC_VER) && (_MSC_VER >= 1400) /* call the VISUAL C++ version of the routines which support */ /* Large Files (> 2GB) if they are supported (since VC 8.0) */ position1 = _ftelli64(diskfile); /* save current postion */ if (position1 < 0) return(SEEK_ERROR); if (_fseeki64(diskfile, 0, 2) != 0) /* seek to end of file */ return(SEEK_ERROR); position2 = _ftelli64(diskfile); /* get file size */ if (position2 < 0) return(SEEK_ERROR); if (_fseeki64(diskfile, position1, 0) != 0) /* seek back to original pos */ return(SEEK_ERROR); #elif _FILE_OFFSET_BITS - 0 == 64 /* call the newer ftello and fseeko routines , which support */ /* Large Files (> 2GB) if they are supported. */ position1 = ftello(diskfile); /* save current postion */ if (position1 < 0) return(SEEK_ERROR); if (fseeko(diskfile, 0, 2) != 0) /* seek to end of file */ return(SEEK_ERROR); position2 = ftello(diskfile); /* get file size */ if (position2 < 0) return(SEEK_ERROR); if (fseeko(diskfile, position1, 0) != 0) /* seek back to original pos */ return(SEEK_ERROR); #else position1 = ftell(diskfile); /* save current postion */ if (position1 < 0) return(SEEK_ERROR); if (fseek(diskfile, 0, 2) != 0) /* seek to end of file */ return(SEEK_ERROR); position2 = ftell(diskfile); /* get file size */ if (position2 < 0) return(SEEK_ERROR); if (fseek(diskfile, position1, 0) != 0) /* seek back to original pos */ return(SEEK_ERROR); #endif *filesize = (LONGLONG) position2; return(0); } /*--------------------------------------------------------------------------*/ int file_close(int handle) /* close the file */ { if (fclose(handleTable[handle].fileptr) ) return(FILE_NOT_CLOSED); handleTable[handle].fileptr = 0; return(0); } /*--------------------------------------------------------------------------*/ int file_remove(char *filename) /* delete the file from disk */ { remove(filename); return(0); } /*--------------------------------------------------------------------------*/ int file_flush(int handle) /* flush the file */ { if (fflush(handleTable[handle].fileptr) ) return(WRITE_ERROR); /* The flush operation is not supposed to move the internal */ /* file pointer, but it does on some Windows-95 compilers and */ /* perhaps others, so seek to original position to be sure. */ /* This seek will do no harm on other systems. */ #if MACHINE == IBMPC if (file_seek(handle, handleTable[handle].currentpos)) return(SEEK_ERROR); #endif return(0); } /*--------------------------------------------------------------------------*/ int file_seek(int handle, LONGLONG offset) /* seek to position relative to start of the file */ { #if defined(_MSC_VER) && (_MSC_VER >= 1400) /* Microsoft visual studio C++ */ /* _fseeki64 supported beginning with version 8.0 */ if (_fseeki64(handleTable[handle].fileptr, (OFF_T) offset, 0) != 0) return(SEEK_ERROR); #elif _FILE_OFFSET_BITS - 0 == 64 if (fseeko(handleTable[handle].fileptr, (OFF_T) offset, 0) != 0) return(SEEK_ERROR); #else if (fseek(handleTable[handle].fileptr, (OFF_T) offset, 0) != 0) return(SEEK_ERROR); #endif handleTable[handle].currentpos = offset; return(0); } /*--------------------------------------------------------------------------*/ int file_read(int hdl, void *buffer, long nbytes) /* read bytes from the current position in the file */ { long nread; char *cptr; if (handleTable[hdl].last_io_op == IO_WRITE) { if (file_seek(hdl, handleTable[hdl].currentpos)) return(SEEK_ERROR); } nread = (long) fread(buffer, 1, nbytes, handleTable[hdl].fileptr); if (nread == 1) { cptr = (char *) buffer; /* some editors will add a single end-of-file character to a file */ /* Ignore it if the character is a zero, 10, or 32 */ if (*cptr == 0 || *cptr == 10 || *cptr == 32) return(END_OF_FILE); else return(READ_ERROR); } else if (nread != nbytes) { return(READ_ERROR); } handleTable[hdl].currentpos += nbytes; handleTable[hdl].last_io_op = IO_READ; return(0); } /*--------------------------------------------------------------------------*/ int file_write(int hdl, void *buffer, long nbytes) /* write bytes at the current position in the file */ { if (handleTable[hdl].last_io_op == IO_READ) { if (file_seek(hdl, handleTable[hdl].currentpos)) return(SEEK_ERROR); } if((long) fwrite(buffer, 1, nbytes, handleTable[hdl].fileptr) != nbytes) return(WRITE_ERROR); handleTable[hdl].currentpos += nbytes; handleTable[hdl].last_io_op = IO_WRITE; return(0); } /*--------------------------------------------------------------------------*/ int file_compress_open(char *filename, int rwmode, int *hdl) /* This routine opens the compressed diskfile by creating a new uncompressed file then opening it. The input file name (the name of the compressed file) gets replaced with the name of the uncompressed file, which is initially stored in the global file_outfile string. file_outfile then gets set to a null string. */ { FILE *indiskfile, *outdiskfile; int status; char *cptr; /* open the compressed disk file */ status = file_openfile(filename, READONLY, &indiskfile); if (status) { ffpmsg("failed to open compressed disk file (file_compress_open)"); ffpmsg(filename); return(status); } /* name of the output uncompressed file is stored in the */ /* global variable called 'file_outfile'. */ cptr = file_outfile; if (*cptr == '!') { /* clobber any existing file with the same name */ cptr++; remove(cptr); } else { outdiskfile = fopen(file_outfile, "r"); /* does file already exist? */ if (outdiskfile) { ffpmsg("uncompressed file already exists: (file_compress_open)"); ffpmsg(file_outfile); fclose(outdiskfile); /* close file and exit with error */ file_outfile[0] = '\0'; return(FILE_NOT_CREATED); } } outdiskfile = fopen(cptr, "w+b"); /* create new file */ if (!outdiskfile) { ffpmsg("could not create uncompressed file: (file_compress_open)"); ffpmsg(file_outfile); file_outfile[0] = '\0'; return(FILE_NOT_CREATED); } /* uncompress file into another file */ uncompress2file(filename, indiskfile, outdiskfile, &status); fclose(indiskfile); fclose(outdiskfile); if (status) { ffpmsg("error in file_compress_open: failed to uncompressed file:"); ffpmsg(filename); ffpmsg(" into new output file:"); ffpmsg(file_outfile); file_outfile[0] = '\0'; return(status); } strcpy(filename, cptr); /* switch the names */ file_outfile[0] = '\0'; status = file_open(filename, rwmode, hdl); return(status); } /*--------------------------------------------------------------------------*/ int file_is_compressed(char *filename) /* I - FITS file name */ /* Test if the disk file is compressed. Returns 1 if compressed, 0 if not. This may modify the filename string by appending a compression suffex. */ { FILE *diskfile; unsigned char buffer[2]; char tmpfilename[FLEN_FILENAME]; /* Open file. Try various suffix combinations */ if (file_openfile(filename, 0, &diskfile)) { if (strlen(filename) > FLEN_FILENAME - 1) return(0); strcpy(tmpfilename,filename); strcat(filename,".gz"); if (file_openfile(filename, 0, &diskfile)) { strcpy(filename, tmpfilename); strcat(filename,".Z"); if (file_openfile(filename, 0, &diskfile)) { strcpy(filename, tmpfilename); strcat(filename,".z"); /* it's often lower case on CDROMs */ if (file_openfile(filename, 0, &diskfile)) { strcpy(filename, tmpfilename); strcat(filename,".zip"); if (file_openfile(filename, 0, &diskfile)) { strcpy(filename, tmpfilename); strcat(filename,"-z"); /* VMS suffix */ if (file_openfile(filename, 0, &diskfile)) { strcpy(filename, tmpfilename); strcat(filename,"-gz"); /* VMS suffix */ if (file_openfile(filename, 0, &diskfile)) { strcpy(filename,tmpfilename); /* restore original name */ return(0); /* file not found */ } } } } } } } if (fread(buffer, 1, 2, diskfile) != 2) /* read 2 bytes */ { fclose(diskfile); /* error reading file so just return */ return(0); } fclose(diskfile); /* see if the 2 bytes have the magic values for a compressed file */ if ( (memcmp(buffer, "\037\213", 2) == 0) || /* GZIP */ (memcmp(buffer, "\120\113", 2) == 0) || /* PKZIP */ (memcmp(buffer, "\037\036", 2) == 0) || /* PACK */ (memcmp(buffer, "\037\235", 2) == 0) || /* LZW */ (memcmp(buffer, "\037\240", 2) == 0) ) /* LZH */ { return(1); /* this is a compressed file */ } else { return(0); /* not a compressed file */ } } /*--------------------------------------------------------------------------*/ int file_checkfile (char *urltype, char *infile, char *outfile) { /* special case: if file:// driver, check if the file is compressed */ if ( file_is_compressed(infile) ) { /* if output file has been specified, save the name for future use: */ /* This is the name of the uncompressed file to be created on disk. */ if (strlen(outfile)) { if (!strncmp(outfile, "mem:", 4) ) { /* uncompress the file in memory, with READ and WRITE access */ strcpy(urltype, "compressmem://"); /* use special driver */ *file_outfile = '\0'; } else { strcpy(urltype, "compressfile://"); /* use special driver */ /* don't copy the "file://" prefix, if present. */ if (!strncmp(outfile, "file://", 7) ) strcpy(file_outfile,outfile+7); else strcpy(file_outfile,outfile); } } else { /* uncompress the file in memory */ strcpy(urltype, "compress://"); /* use special driver */ *file_outfile = '\0'; /* no output file was specified */ } } else /* an ordinary, uncompressed FITS file on disk */ { /* save the output file name for later use when opening the file. */ /* In this case, the file to be opened will be opened READONLY, */ /* and copied to this newly created output file. The original file */ /* will be closed, and the copy will be opened by CFITSIO for */ /* subsequent processing (possibly with READWRITE access). */ if (strlen(outfile)) { file_outfile[0] = '\0'; strncat(file_outfile,outfile,FLEN_FILENAME-1); } } return 0; } /**********************************************************************/ /**********************************************************************/ /**********************************************************************/ /**** driver routines for stream//: device (stdin or stdout) ********/ /*--------------------------------------------------------------------------*/ int stream_open(char *filename, int rwmode, int *handle) { /* read from stdin */ if (filename) rwmode = 1; /* dummy statement to suppress unused parameter compiler warning */ *handle = 1; /* 1 = stdin */ return(0); } /*--------------------------------------------------------------------------*/ int stream_create(char *filename, int *handle) { /* write to stdout */ if (filename) /* dummy statement to suppress unused parameter compiler warning */ *handle = 2; else *handle = 2; /* 2 = stdout */ return(0); } /*--------------------------------------------------------------------------*/ int stream_size(int handle, LONGLONG *filesize) /* return the size of the file in bytes */ { handle = 0; /* suppress unused parameter compiler warning */ /* this operation is not supported in a stream; return large value */ *filesize = LONG_MAX; return(0); } /*--------------------------------------------------------------------------*/ int stream_close(int handle) /* don't have to close stdin or stdout */ { handle = 0; /* suppress unused parameter compiler warning */ return(0); } /*--------------------------------------------------------------------------*/ int stream_flush(int handle) /* flush the file */ { if (handle == 2) fflush(stdout); return(0); } /*--------------------------------------------------------------------------*/ int stream_seek(int handle, LONGLONG offset) /* seeking is not allowed in a stream */ { offset = handle; /* suppress unused parameter compiler warning */ return(1); } /*--------------------------------------------------------------------------*/ int stream_read(int hdl, void *buffer, long nbytes) /* reading from stdin stream */ { long nread; if (hdl != 1) return(1); /* can only read from stdin */ nread = (long) fread(buffer, 1, nbytes, stdin); if (nread != nbytes) { /* return(READ_ERROR); */ return(END_OF_FILE); } return(0); } /*--------------------------------------------------------------------------*/ int stream_write(int hdl, void *buffer, long nbytes) /* write bytes at the current position in the file */ { if (hdl != 2) return(1); /* can only write to stdout */ if((long) fwrite(buffer, 1, nbytes, stdout) != nbytes) return(WRITE_ERROR); return(0); } healpy-1.8.1/cfitsio/fits_hdecompress.c0000654000175000017530000017356612272000775020604 0ustar zoncaplanck00000000000000/* ######################################################################### These routines to apply the H-compress decompression algorithm to a 2-D Fits image were written by R. White at the STScI and were obtained from the STScI at http://www.stsci.edu/software/hcompress.html This source file is a concatination of the following sources files in the original distribution hinv.c hsmooth.c undigitize.c decode.c dodecode.c qtree_decode.c qread.c bit_input.c The following modifications have been made to the original code: - commented out redundant "include" statements - added the nextchar global variable - changed all the 'extern' declarations to 'static', since all the routines are in the same source file - changed the first parameter in decode (and in lower level routines from a file stream to a char array - modified the myread routine, and lower level byte reading routines, to copy the input bytes to a char array, instead of reading them from a file stream - changed the function declarations to the more modern ANSI C style - changed calls to printf and perror to call the CFITSIO ffpmsg routine - replace "exit" statements with "return" statements ############################################################################ */ #include #include #include #include #include "fitsio2.h" /* WDP added test to see if min and max are already defined */ #ifndef min #define min(a,b) (((a)<(b))?(a):(b)) #endif #ifndef max #define max(a,b) (((a)>(b))?(a):(b)) #endif static long nextchar; static int decode(unsigned char *infile, int *a, int *nx, int *ny, int *scale); static int decode64(unsigned char *infile, LONGLONG *a, int *nx, int *ny, int *scale); static int hinv(int a[], int nx, int ny, int smooth ,int scale); static int hinv64(LONGLONG a[], int nx, int ny, int smooth ,int scale); static void undigitize(int a[], int nx, int ny, int scale); static void undigitize64(LONGLONG a[], int nx, int ny, int scale); static void unshuffle(int a[], int n, int n2, int tmp[]); static void unshuffle64(LONGLONG a[], int n, int n2, LONGLONG tmp[]); static void hsmooth(int a[], int nxtop, int nytop, int ny, int scale); static void hsmooth64(LONGLONG a[], int nxtop, int nytop, int ny, int scale); static void qread(unsigned char *infile,char *a, int n); static int readint(unsigned char *infile); static LONGLONG readlonglong(unsigned char *infile); static int dodecode(unsigned char *infile, int a[], int nx, int ny, unsigned char nbitplanes[3]); static int dodecode64(unsigned char *infile, LONGLONG a[], int nx, int ny, unsigned char nbitplanes[3]); static int qtree_decode(unsigned char *infile, int a[], int n, int nqx, int nqy, int nbitplanes); static int qtree_decode64(unsigned char *infile, LONGLONG a[], int n, int nqx, int nqy, int nbitplanes); static void start_inputing_bits(void); static int input_bit(unsigned char *infile); static int input_nbits(unsigned char *infile, int n); /* make input_nybble a separate routine, for added effiency */ /* #define input_nybble(infile) input_nbits(infile,4) */ static int input_nybble(unsigned char *infile); static int input_nnybble(unsigned char *infile, int n, unsigned char *array); static void qtree_expand(unsigned char *infile, unsigned char a[], int nx, int ny, unsigned char b[]); static void qtree_bitins(unsigned char a[], int nx, int ny, int b[], int n, int bit); static void qtree_bitins64(unsigned char a[], int nx, int ny, LONGLONG b[], int n, int bit); static void qtree_copy(unsigned char a[], int nx, int ny, unsigned char b[], int n); static void read_bdirect(unsigned char *infile, int a[], int n, int nqx, int nqy, unsigned char scratch[], int bit); static void read_bdirect64(unsigned char *infile, LONGLONG a[], int n, int nqx, int nqy, unsigned char scratch[], int bit); static int input_huffman(unsigned char *infile); /* ---------------------------------------------------------------------- */ int fits_hdecompress(unsigned char *input, int smooth, int *a, int *ny, int *nx, int *scale, int *status) { /* decompress the input byte stream using the H-compress algorithm input - input array of compressed bytes a - pre-allocated array to hold the output uncompressed image nx - returned X axis size ny - returned Y axis size NOTE: the nx and ny dimensions as defined within this code are reversed from the usual FITS notation. ny is the fastest varying dimension, which is usually considered the X axis in the FITS image display */ int stat; if (*status > 0) return(*status); /* decode the input array */ FFLOCK; /* decode uses the nextchar global variable */ stat = decode(input, a, nx, ny, scale); FFUNLOCK; *status = stat; if (stat) return(*status); /* * Un-Digitize */ undigitize(a, *nx, *ny, *scale); /* * Inverse H-transform */ stat = hinv(a, *nx, *ny, smooth, *scale); *status = stat; return(*status); } /* ---------------------------------------------------------------------- */ int fits_hdecompress64(unsigned char *input, int smooth, LONGLONG *a, int *ny, int *nx, int *scale, int *status) { /* decompress the input byte stream using the H-compress algorithm input - input array of compressed bytes a - pre-allocated array to hold the output uncompressed image nx - returned X axis size ny - returned Y axis size NOTE: the nx and ny dimensions as defined within this code are reversed from the usual FITS notation. ny is the fastest varying dimension, which is usually considered the X axis in the FITS image display */ int stat, *iarray, ii, nval; if (*status > 0) return(*status); /* decode the input array */ FFLOCK; /* decode uses the nextchar global variable */ stat = decode64(input, a, nx, ny, scale); FFUNLOCK; *status = stat; if (stat) return(*status); /* * Un-Digitize */ undigitize64(a, *nx, *ny, *scale); /* * Inverse H-transform */ stat = hinv64(a, *nx, *ny, smooth, *scale); *status = stat; /* pack the I*8 values back into an I*4 array */ iarray = (int *) a; nval = (*nx) * (*ny); for (ii = 0; ii < nval; ii++) iarray[ii] = (int) a[ii]; return(*status); } /* ############################################################################ */ /* ############################################################################ */ /* Copyright (c) 1993 Association of Universities for Research * in Astronomy. All rights reserved. Produced under National * Aeronautics and Space Administration Contract No. NAS5-26555. */ /* hinv.c Inverse H-transform of NX x NY integer image * * Programmer: R. White Date: 23 July 1993 */ /* ############################################################################ */ static int hinv(int a[], int nx, int ny, int smooth ,int scale) /* int smooth; 0 for no smoothing, else smooth during inversion int scale; used if smoothing is specified */ { int nmax, log2n, i, j, k; int nxtop,nytop,nxf,nyf,c; int oddx,oddy; int shift, bit0, bit1, bit2, mask0, mask1, mask2, prnd0, prnd1, prnd2, nrnd0, nrnd1, nrnd2, lowbit0, lowbit1; int h0, hx, hy, hc; int s10, s00; int *tmp; /* * log2n is log2 of max(nx,ny) rounded up to next power of 2 */ nmax = (nx>ny) ? nx : ny; log2n = (int) (log((float) nmax)/log(2.0)+0.5); if ( nmax > (1<> 1; prnd1 = bit1 >> 1; prnd2 = bit2 >> 1; nrnd0 = prnd0 - 1; nrnd1 = prnd1 - 1; nrnd2 = prnd2 - 1; /* * round h0 to multiple of bit2 */ a[0] = (a[0] + ((a[0] >= 0) ? prnd2 : nrnd2)) & mask2; /* * do log2n expansions * * We're indexing a as a 2-D array with dimensions (nx,ny). */ nxtop = 1; nytop = 1; nxf = nx; nyf = ny; c = 1<=0; k--) { /* * this somewhat cryptic code generates the sequence * ntop[k-1] = (ntop[k]+1)/2, where ntop[log2n] = n */ c = c>>1; nxtop = nxtop<<1; nytop = nytop<<1; if (nxf <= c) { nxtop -= 1; } else { nxf -= c; } if (nyf <= c) { nytop -= 1; } else { nyf -= c; } /* * double shift and fix nrnd0 (because prnd0=0) on last pass */ if (k == 0) { nrnd0 = 0; shift = 2; } /* * unshuffle in each dimension to interleave coefficients */ for (i = 0; i= 0) ? prnd1 : nrnd1)) & mask1; hy = (hy + ((hy >= 0) ? prnd1 : nrnd1)) & mask1; hc = (hc + ((hc >= 0) ? prnd0 : nrnd0)) & mask0; /* * propagate bit0 of hc to hx,hy */ lowbit0 = hc & bit0; hx = (hx >= 0) ? (hx - lowbit0) : (hx + lowbit0); hy = (hy >= 0) ? (hy - lowbit0) : (hy + lowbit0); /* * Propagate bits 0 and 1 of hc,hx,hy to h0. * This could be simplified if we assume h0>0, but then * the inversion would not be lossless for images with * negative pixels. */ lowbit1 = (hc ^ hx ^ hy) & bit1; h0 = (h0 >= 0) ? (h0 + lowbit0 - lowbit1) : (h0 + ((lowbit0 == 0) ? lowbit1 : (lowbit0-lowbit1))); /* * Divide sums by 2 (4 last time) */ a[s10+1] = (h0 + hx + hy + hc) >> shift; a[s10 ] = (h0 + hx - hy - hc) >> shift; a[s00+1] = (h0 - hx + hy - hc) >> shift; a[s00 ] = (h0 - hx - hy + hc) >> shift; s00 += 2; s10 += 2; } if (oddy) { /* * do last element in row if row length is odd * s00+1, s10+1 are off edge */ h0 = a[s00 ]; hx = a[s10 ]; hx = ((hx >= 0) ? (hx+prnd1) : (hx+nrnd1)) & mask1; lowbit1 = hx & bit1; h0 = (h0 >= 0) ? (h0 - lowbit1) : (h0 + lowbit1); a[s10 ] = (h0 + hx) >> shift; a[s00 ] = (h0 - hx) >> shift; } } if (oddx) { /* * do last row if column length is odd * s10, s10+1 are off edge */ s00 = ny*i; for (j = 0; j= 0) ? (hy+prnd1) : (hy+nrnd1)) & mask1; lowbit1 = hy & bit1; h0 = (h0 >= 0) ? (h0 - lowbit1) : (h0 + lowbit1); a[s00+1] = (h0 + hy) >> shift; a[s00 ] = (h0 - hy) >> shift; s00 += 2; } if (oddy) { /* * do corner element if both row and column lengths are odd * s00+1, s10, s10+1 are off edge */ h0 = a[s00 ]; a[s00 ] = h0 >> shift; } } /* * divide all the masks and rounding values by 2 */ bit2 = bit1; bit1 = bit0; bit0 = bit0 >> 1; mask1 = mask0; mask0 = mask0 >> 1; prnd1 = prnd0; prnd0 = prnd0 >> 1; nrnd1 = nrnd0; nrnd0 = prnd0 - 1; } free(tmp); return(0); } /* ############################################################################ */ static int hinv64(LONGLONG a[], int nx, int ny, int smooth ,int scale) /* int smooth; 0 for no smoothing, else smooth during inversion int scale; used if smoothing is specified */ { int nmax, log2n, i, j, k; int nxtop,nytop,nxf,nyf,c; int oddx,oddy; int shift; LONGLONG mask0, mask1, mask2, prnd0, prnd1, prnd2, bit0, bit1, bit2; LONGLONG nrnd0, nrnd1, nrnd2, lowbit0, lowbit1; LONGLONG h0, hx, hy, hc; int s10, s00; LONGLONG *tmp; /* * log2n is log2 of max(nx,ny) rounded up to next power of 2 */ nmax = (nx>ny) ? nx : ny; log2n = (int) (log((float) nmax)/log(2.0)+0.5); if ( nmax > (1<> 1; prnd1 = bit1 >> 1; prnd2 = bit2 >> 1; nrnd0 = prnd0 - 1; nrnd1 = prnd1 - 1; nrnd2 = prnd2 - 1; /* * round h0 to multiple of bit2 */ a[0] = (a[0] + ((a[0] >= 0) ? prnd2 : nrnd2)) & mask2; /* * do log2n expansions * * We're indexing a as a 2-D array with dimensions (nx,ny). */ nxtop = 1; nytop = 1; nxf = nx; nyf = ny; c = 1<=0; k--) { /* * this somewhat cryptic code generates the sequence * ntop[k-1] = (ntop[k]+1)/2, where ntop[log2n] = n */ c = c>>1; nxtop = nxtop<<1; nytop = nytop<<1; if (nxf <= c) { nxtop -= 1; } else { nxf -= c; } if (nyf <= c) { nytop -= 1; } else { nyf -= c; } /* * double shift and fix nrnd0 (because prnd0=0) on last pass */ if (k == 0) { nrnd0 = 0; shift = 2; } /* * unshuffle in each dimension to interleave coefficients */ for (i = 0; i= 0) ? prnd1 : nrnd1)) & mask1; hy = (hy + ((hy >= 0) ? prnd1 : nrnd1)) & mask1; hc = (hc + ((hc >= 0) ? prnd0 : nrnd0)) & mask0; /* * propagate bit0 of hc to hx,hy */ lowbit0 = hc & bit0; hx = (hx >= 0) ? (hx - lowbit0) : (hx + lowbit0); hy = (hy >= 0) ? (hy - lowbit0) : (hy + lowbit0); /* * Propagate bits 0 and 1 of hc,hx,hy to h0. * This could be simplified if we assume h0>0, but then * the inversion would not be lossless for images with * negative pixels. */ lowbit1 = (hc ^ hx ^ hy) & bit1; h0 = (h0 >= 0) ? (h0 + lowbit0 - lowbit1) : (h0 + ((lowbit0 == 0) ? lowbit1 : (lowbit0-lowbit1))); /* * Divide sums by 2 (4 last time) */ a[s10+1] = (h0 + hx + hy + hc) >> shift; a[s10 ] = (h0 + hx - hy - hc) >> shift; a[s00+1] = (h0 - hx + hy - hc) >> shift; a[s00 ] = (h0 - hx - hy + hc) >> shift; s00 += 2; s10 += 2; } if (oddy) { /* * do last element in row if row length is odd * s00+1, s10+1 are off edge */ h0 = a[s00 ]; hx = a[s10 ]; hx = ((hx >= 0) ? (hx+prnd1) : (hx+nrnd1)) & mask1; lowbit1 = hx & bit1; h0 = (h0 >= 0) ? (h0 - lowbit1) : (h0 + lowbit1); a[s10 ] = (h0 + hx) >> shift; a[s00 ] = (h0 - hx) >> shift; } } if (oddx) { /* * do last row if column length is odd * s10, s10+1 are off edge */ s00 = ny*i; for (j = 0; j= 0) ? (hy+prnd1) : (hy+nrnd1)) & mask1; lowbit1 = hy & bit1; h0 = (h0 >= 0) ? (h0 - lowbit1) : (h0 + lowbit1); a[s00+1] = (h0 + hy) >> shift; a[s00 ] = (h0 - hy) >> shift; s00 += 2; } if (oddy) { /* * do corner element if both row and column lengths are odd * s00+1, s10, s10+1 are off edge */ h0 = a[s00 ]; a[s00 ] = h0 >> shift; } } /* * divide all the masks and rounding values by 2 */ bit2 = bit1; bit1 = bit0; bit0 = bit0 >> 1; mask1 = mask0; mask0 = mask0 >> 1; prnd1 = prnd0; prnd0 = prnd0 >> 1; nrnd1 = nrnd0; nrnd0 = prnd0 - 1; } free(tmp); return(0); } /* ############################################################################ */ static void unshuffle(int a[], int n, int n2, int tmp[]) /* int a[]; array to shuffle int n; number of elements to shuffle int n2; second dimension int tmp[]; scratch storage */ { int i; int nhalf; int *p1, *p2, *pt; /* * copy 2nd half of array to tmp */ nhalf = (n+1)>>1; pt = tmp; p1 = &a[n2*nhalf]; /* pointer to a[i] */ for (i=nhalf; i= 0; i--) { *p1 = *p2; p2 -= n2; p1 -= (n2+n2); } /* * now distribute 2nd half of array (in tmp) to odd elements */ pt = tmp; p1 = &a[n2]; /* pointer to a[i] */ for (i=1; i>1; pt = tmp; p1 = &a[n2*nhalf]; /* pointer to a[i] */ for (i=nhalf; i= 0; i--) { *p1 = *p2; p2 -= n2; p1 -= (n2+n2); } /* * now distribute 2nd half of array (in tmp) to odd elements */ pt = tmp; p1 = &a[n2]; /* pointer to a[i] */ for (i=1; i> 1); if (smax <= 0) return; ny2 = ny << 1; /* * We're indexing a as a 2-D array with dimensions (nxtop,ny) of which * only (nxtop,nytop) are used. The coefficients on the edge of the * array are not adjusted (which is why the loops below start at 2 * instead of 0 and end at nxtop-2 instead of nxtop.) */ /* * Adjust x difference hx */ for (i = 2; i=0, dmin<=0. */ if (dmin < dmax) { diff = max( min(diff, dmax), dmin); /* * Compute change in slope limited to range +/- smax. * Careful with rounding negative numbers when using * shift for divide by 8. */ s = diff-(a[s10]<<3); s = (s>=0) ? (s>>3) : ((s+7)>>3) ; s = max( min(s, smax), -smax); a[s10] = a[s10]+s; } s00 += 2; s10 += 2; } } /* * Adjust y difference hy */ for (i = 0; i=0) ? (s>>3) : ((s+7)>>3) ; s = max( min(s, smax), -smax); a[s00+1] = a[s00+1]+s; } s00 += 2; s10 += 2; } } /* * Adjust curvature difference hc */ for (i = 2; i=0, dmin<=0. */ if (dmin < dmax) { diff = max( min(diff, dmax), dmin); /* * Compute change in slope limited to range +/- smax. * Careful with rounding negative numbers when using * shift for divide by 64. */ s = diff-(a[s10+1]<<6); s = (s>=0) ? (s>>6) : ((s+63)>>6) ; s = max( min(s, smax), -smax); a[s10+1] = a[s10+1]+s; } s00 += 2; s10 += 2; } } } /* ############################################################################ */ static void hsmooth64(LONGLONG a[], int nxtop, int nytop, int ny, int scale) /* LONGLONG a[]; array of H-transform coefficients int nxtop,nytop; size of coefficient block to use int ny; actual 1st dimension of array int scale; truncation scale factor that was used */ { int i, j; int ny2, s10, s00; LONGLONG hm, h0, hp, hmm, hpm, hmp, hpp, hx2, hy2, diff, dmax, dmin, s, smax, m1, m2; /* * Maximum change in coefficients is determined by scale factor. * Since we rounded during division (see digitize.c), the biggest * permitted change is scale/2. */ smax = (scale >> 1); if (smax <= 0) return; ny2 = ny << 1; /* * We're indexing a as a 2-D array with dimensions (nxtop,ny) of which * only (nxtop,nytop) are used. The coefficients on the edge of the * array are not adjusted (which is why the loops below start at 2 * instead of 0 and end at nxtop-2 instead of nxtop.) */ /* * Adjust x difference hx */ for (i = 2; i=0, dmin<=0. */ if (dmin < dmax) { diff = max( min(diff, dmax), dmin); /* * Compute change in slope limited to range +/- smax. * Careful with rounding negative numbers when using * shift for divide by 8. */ s = diff-(a[s10]<<3); s = (s>=0) ? (s>>3) : ((s+7)>>3) ; s = max( min(s, smax), -smax); a[s10] = a[s10]+s; } s00 += 2; s10 += 2; } } /* * Adjust y difference hy */ for (i = 0; i=0) ? (s>>3) : ((s+7)>>3) ; s = max( min(s, smax), -smax); a[s00+1] = a[s00+1]+s; } s00 += 2; s10 += 2; } } /* * Adjust curvature difference hc */ for (i = 2; i=0, dmin<=0. */ if (dmin < dmax) { diff = max( min(diff, dmax), dmin); /* * Compute change in slope limited to range +/- smax. * Careful with rounding negative numbers when using * shift for divide by 64. */ s = diff-(a[s10+1]<<6); s = (s>=0) ? (s>>6) : ((s+63)>>6) ; s = max( min(s, smax), -smax); a[s10+1] = a[s10+1]+s; } s00 += 2; s10 += 2; } } } /* ############################################################################ */ /* ############################################################################ */ /* Copyright (c) 1993 Association of Universities for Research * in Astronomy. All rights reserved. Produced under National * Aeronautics and Space Administration Contract No. NAS5-26555. */ /* undigitize.c undigitize H-transform * * Programmer: R. White Date: 9 May 1991 */ /* ############################################################################ */ static void undigitize(int a[], int nx, int ny, int scale) { int *p; /* * multiply by scale */ if (scale <= 1) return; for (p=a; p <= &a[nx*ny-1]; p++) *p = (*p)*scale; } /* ############################################################################ */ static void undigitize64(LONGLONG a[], int nx, int ny, int scale) { LONGLONG *p, scale64; /* * multiply by scale */ if (scale <= 1) return; scale64 = (LONGLONG) scale; /* use a 64-bit int for efficiency in the big loop */ for (p=a; p <= &a[nx*ny-1]; p++) *p = (*p)*scale64; } /* ############################################################################ */ /* ############################################################################ */ /* Copyright (c) 1993 Association of Universities for Research * in Astronomy. All rights reserved. Produced under National * Aeronautics and Space Administration Contract No. NAS5-26555. */ /* decode.c read codes from infile and construct array * * Programmer: R. White Date: 2 February 1994 */ static char code_magic[2] = { (char)0xDD, (char)0x99 }; /* ############################################################################ */ static int decode(unsigned char *infile, int *a, int *nx, int *ny, int *scale) /* char *infile; input file int *a; address of output array [nx][ny] int *nx,*ny; size of output array int *scale; scale factor for digitization */ { LONGLONG sumall; int nel, stat; unsigned char nbitplanes[3]; char tmagic[2]; /* initialize the byte read position to the beginning of the array */; nextchar = 0; /* * File starts either with special 2-byte magic code or with * FITS keyword "SIMPLE =" */ qread(infile, tmagic, sizeof(tmagic)); /* * check for correct magic code value */ if (memcmp(tmagic,code_magic,sizeof(code_magic)) != 0) { ffpmsg("bad file format"); return(DATA_DECOMPRESSION_ERR); } *nx =readint(infile); /* x size of image */ *ny =readint(infile); /* y size of image */ *scale=readint(infile); /* scale factor for digitization */ nel = (*nx) * (*ny); /* sum of all pixels */ sumall=readlonglong(infile); /* # bits in quadrants */ qread(infile, (char *) nbitplanes, sizeof(nbitplanes)); stat = dodecode(infile, a, *nx, *ny, nbitplanes); /* * put sum of all pixels back into pixel 0 */ a[0] = (int) sumall; return(stat); } /* ############################################################################ */ static int decode64(unsigned char *infile, LONGLONG *a, int *nx, int *ny, int *scale) /* char *infile; input file LONGLONG *a; address of output array [nx][ny] int *nx,*ny; size of output array int *scale; scale factor for digitization */ { int nel, stat; LONGLONG sumall; unsigned char nbitplanes[3]; char tmagic[2]; /* initialize the byte read position to the beginning of the array */; nextchar = 0; /* * File starts either with special 2-byte magic code or with * FITS keyword "SIMPLE =" */ qread(infile, tmagic, sizeof(tmagic)); /* * check for correct magic code value */ if (memcmp(tmagic,code_magic,sizeof(code_magic)) != 0) { ffpmsg("bad file format"); return(DATA_DECOMPRESSION_ERR); } *nx =readint(infile); /* x size of image */ *ny =readint(infile); /* y size of image */ *scale=readint(infile); /* scale factor for digitization */ nel = (*nx) * (*ny); /* sum of all pixels */ sumall=readlonglong(infile); /* # bits in quadrants */ qread(infile, (char *) nbitplanes, sizeof(nbitplanes)); stat = dodecode64(infile, a, *nx, *ny, nbitplanes); /* * put sum of all pixels back into pixel 0 */ a[0] = sumall; return(stat); } /* ############################################################################ */ /* ############################################################################ */ /* Copyright (c) 1993 Association of Universities for Research * in Astronomy. All rights reserved. Produced under National * Aeronautics and Space Administration Contract No. NAS5-26555. */ /* dodecode.c Decode stream of characters on infile and return array * * This version encodes the different quadrants separately * * Programmer: R. White Date: 9 May 1991 */ /* ############################################################################ */ static int dodecode(unsigned char *infile, int a[], int nx, int ny, unsigned char nbitplanes[3]) /* int a[]; int nx,ny; Array dimensions are [nx][ny] unsigned char nbitplanes[3]; Number of bit planes in quadrants */ { int i, nel, nx2, ny2, stat; nel = nx*ny; nx2 = (nx+1)/2; ny2 = (ny+1)/2; /* * initialize a to zero */ for (i=0; inqy) ? nqx : nqy; log2n = (int) (log((float) nqmax)/log(2.0)+0.5); if (nqmax > (1<= 0; bit--) { /* * Was bitplane was quadtree-coded or written directly? */ b = input_nybble(infile); if(b == 0) { /* * bit map was written directly */ read_bdirect(infile,a,n,nqx,nqy,scratch,bit); } else if (b != 0xf) { ffpmsg("qtree_decode: bad format code"); return(DATA_DECOMPRESSION_ERR); } else { /* * bitmap was quadtree-coded, do log2n expansions * * read first code */ scratch[0] = input_huffman(infile); /* * now do log2n expansions, reading codes from file as necessary */ nx = 1; ny = 1; nfx = nqx; nfy = nqy; c = 1<>1; nx = nx<<1; ny = ny<<1; if (nfx <= c) { nx -= 1; } else { nfx -= c; } if (nfy <= c) { ny -= 1; } else { nfy -= c; } qtree_expand(infile,scratch,nx,ny,scratch); } /* * now copy last set of 4-bit codes to bitplane bit of array a */ qtree_bitins(scratch,nqx,nqy,a,n,bit); } } free(scratch); return(0); } /* ############################################################################ */ static int qtree_decode64(unsigned char *infile, LONGLONG a[], int n, int nqx, int nqy, int nbitplanes) /* char *infile; LONGLONG a[]; a is 2-D array with dimensions (n,n) int n; length of full row in a int nqx; partial length of row to decode int nqy; partial length of column (<=n) int nbitplanes; number of bitplanes to decode */ { int log2n, k, bit, b, nqmax; int nx,ny,nfx,nfy,c; int nqx2, nqy2; unsigned char *scratch; /* * log2n is log2 of max(nqx,nqy) rounded up to next power of 2 */ nqmax = (nqx>nqy) ? nqx : nqy; log2n = (int) (log((float) nqmax)/log(2.0)+0.5); if (nqmax > (1<= 0; bit--) { /* * Was bitplane was quadtree-coded or written directly? */ b = input_nybble(infile); if(b == 0) { /* * bit map was written directly */ read_bdirect64(infile,a,n,nqx,nqy,scratch,bit); } else if (b != 0xf) { ffpmsg("qtree_decode64: bad format code"); return(DATA_DECOMPRESSION_ERR); } else { /* * bitmap was quadtree-coded, do log2n expansions * * read first code */ scratch[0] = input_huffman(infile); /* * now do log2n expansions, reading codes from file as necessary */ nx = 1; ny = 1; nfx = nqx; nfy = nqy; c = 1<>1; nx = nx<<1; ny = ny<<1; if (nfx <= c) { nx -= 1; } else { nfx -= c; } if (nfy <= c) { ny -= 1; } else { nfy -= c; } qtree_expand(infile,scratch,nx,ny,scratch); } /* * now copy last set of 4-bit codes to bitplane bit of array a */ qtree_bitins64(scratch,nqx,nqy,a,n,bit); } } free(scratch); return(0); } /* ############################################################################ */ /* * do one quadtree expansion step on array a[(nqx+1)/2,(nqy+1)/2] * results put into b[nqx,nqy] (which may be the same as a) */ static void qtree_expand(unsigned char *infile, unsigned char a[], int nx, int ny, unsigned char b[]) { int i; /* * first copy a to b, expanding each 4-bit value */ qtree_copy(a,nx,ny,b,ny); /* * now read new 4-bit values into b for each non-zero element */ for (i = nx*ny-1; i >= 0; i--) { if (b[i]) b[i] = input_huffman(infile); } } /* ############################################################################ */ /* * copy 4-bit values from a[(nx+1)/2,(ny+1)/2] to b[nx,ny], expanding * each value to 2x2 pixels * a,b may be same array */ static void qtree_copy(unsigned char a[], int nx, int ny, unsigned char b[], int n) /* int n; declared y dimension of b */ { int i, j, k, nx2, ny2; int s00, s10; /* * first copy 4-bit values to b * start at end in case a,b are same array */ nx2 = (nx+1)/2; ny2 = (ny+1)/2; k = ny2*(nx2-1)+ny2-1; /* k is index of a[i,j] */ for (i = nx2-1; i >= 0; i--) { s00 = 2*(n*i+ny2-1); /* s00 is index of b[2*i,2*j] */ for (j = ny2-1; j >= 0; j--) { b[s00] = a[k]; k -= 1; s00 -= 2; } } /* * now expand each 2x2 block */ for (i = 0; i>1) & 1; b[s00+1] = (b[s00]>>2) & 1; b[s00 ] = (b[s00]>>3) & 1; */ s00 += 2; s10 += 2; } if (j < ny) { /* * row size is odd, do last element in row * s00+1, s10+1 are off edge */ /* not worth converting this to use 16 case statements */ b[s10 ] = (b[s00]>>1) & 1; b[s00 ] = (b[s00]>>3) & 1; } } if (i < nx) { /* * column size is odd, do last row * s10, s10+1 are off edge */ s00 = n*i; for (j = 0; j>2) & 1; b[s00 ] = (b[s00]>>3) & 1; s00 += 2; } if (j < ny) { /* * both row and column size are odd, do corner element * s00+1, s10, s10+1 are off edge */ /* not worth converting this to use 16 case statements */ b[s00 ] = (b[s00]>>3) & 1; } } } /* ############################################################################ */ /* * Copy 4-bit values from a[(nx+1)/2,(ny+1)/2] to b[nx,ny], expanding * each value to 2x2 pixels and inserting into bitplane BIT of B. * A,B may NOT be same array (it wouldn't make sense to be inserting * bits into the same array anyway.) */ static void qtree_bitins(unsigned char a[], int nx, int ny, int b[], int n, int bit) /* int n; declared y dimension of b */ { int i, j, k; int s00; int plane_val; plane_val = 1 << bit; /* * expand each 2x2 block */ k = 0; /* k is index of a[i/2,j/2] */ for (i = 0; i>1) & 1) << bit; b[s00+1] |= ((a[k]>>2) & 1) << bit; b[s00 ] |= ((a[k]>>3) & 1) << bit; */ s00 += 2; /* s10 += 2; */ k += 1; } if (j < ny) { /* * row size is odd, do last element in row * s00+1, s10+1 are off edge */ switch (a[k]) { case(0): break; case(1): break; case(2): b[s00+n ] |= plane_val; break; case(3): b[s00+n ] |= plane_val; break; case(4): break; case(5): break; case(6): b[s00+n ] |= plane_val; break; case(7): b[s00+n ] |= plane_val; break; case(8): b[s00 ] |= plane_val; break; case(9): b[s00 ] |= plane_val; break; case(10): b[s00+n ] |= plane_val; b[s00 ] |= plane_val; break; case(11): b[s00+n ] |= plane_val; b[s00 ] |= plane_val; break; case(12): b[s00 ] |= plane_val; break; case(13): b[s00 ] |= plane_val; break; case(14): b[s00+n ] |= plane_val; b[s00 ] |= plane_val; break; case(15): b[s00+n ] |= plane_val; b[s00 ] |= plane_val; break; } /* b[s10 ] |= ((a[k]>>1) & 1) << bit; b[s00 ] |= ((a[k]>>3) & 1) << bit; */ k += 1; } } if (i < nx) { /* * column size is odd, do last row * s10, s10+1 are off edge */ s00 = n*i; for (j = 0; j>2) & 1) << bit; b[s00 ] |= ((a[k]>>3) & 1) << bit; */ s00 += 2; k += 1; } if (j < ny) { /* * both row and column size are odd, do corner element * s00+1, s10, s10+1 are off edge */ switch (a[k]) { case(0): break; case(1): break; case(2): break; case(3): break; case(4): break; case(5): break; case(6): break; case(7): break; case(8): b[s00 ] |= plane_val; break; case(9): b[s00 ] |= plane_val; break; case(10): b[s00 ] |= plane_val; break; case(11): b[s00 ] |= plane_val; break; case(12): b[s00 ] |= plane_val; break; case(13): b[s00 ] |= plane_val; break; case(14): b[s00 ] |= plane_val; break; case(15): b[s00 ] |= plane_val; break; } /* b[s00 ] |= ((a[k]>>3) & 1) << bit; */ k += 1; } } } /* ############################################################################ */ /* * Copy 4-bit values from a[(nx+1)/2,(ny+1)/2] to b[nx,ny], expanding * each value to 2x2 pixels and inserting into bitplane BIT of B. * A,B may NOT be same array (it wouldn't make sense to be inserting * bits into the same array anyway.) */ static void qtree_bitins64(unsigned char a[], int nx, int ny, LONGLONG b[], int n, int bit) /* int n; declared y dimension of b */ { int i, j, k; int s00; int plane_val; plane_val = 1 << bit; /* * expand each 2x2 block */ k = 0; /* k is index of a[i/2,j/2] */ for (i = 0; i>1) & 1) << bit; b[s00+1] |= ((((LONGLONG)a[k])>>2) & 1) << bit; b[s00 ] |= ((((LONGLONG)a[k])>>3) & 1) << bit; */ s00 += 2; /* s10 += 2; */ k += 1; } if (j < ny) { /* * row size is odd, do last element in row * s00+1, s10+1 are off edge */ switch (a[k]) { case(0): break; case(1): break; case(2): b[s00+n ] |= plane_val; break; case(3): b[s00+n ] |= plane_val; break; case(4): break; case(5): break; case(6): b[s00+n ] |= plane_val; break; case(7): b[s00+n ] |= plane_val; break; case(8): b[s00 ] |= plane_val; break; case(9): b[s00 ] |= plane_val; break; case(10): b[s00+n ] |= plane_val; b[s00 ] |= plane_val; break; case(11): b[s00+n ] |= plane_val; b[s00 ] |= plane_val; break; case(12): b[s00 ] |= plane_val; break; case(13): b[s00 ] |= plane_val; break; case(14): b[s00+n ] |= plane_val; b[s00 ] |= plane_val; break; case(15): b[s00+n ] |= plane_val; b[s00 ] |= plane_val; break; } /* b[s10 ] |= ((((LONGLONG)a[k])>>1) & 1) << bit; b[s00 ] |= ((((LONGLONG)a[k])>>3) & 1) << bit; */ k += 1; } } if (i < nx) { /* * column size is odd, do last row * s10, s10+1 are off edge */ s00 = n*i; for (j = 0; j>2) & 1) << bit; b[s00 ] |= ((((LONGLONG)a[k])>>3) & 1) << bit; */ s00 += 2; k += 1; } if (j < ny) { /* * both row and column size are odd, do corner element * s00+1, s10, s10+1 are off edge */ switch (a[k]) { case(0): break; case(1): break; case(2): break; case(3): break; case(4): break; case(5): break; case(6): break; case(7): break; case(8): b[s00 ] |= plane_val; break; case(9): b[s00 ] |= plane_val; break; case(10): b[s00 ] |= plane_val; break; case(11): b[s00 ] |= plane_val; break; case(12): b[s00 ] |= plane_val; break; case(13): b[s00 ] |= plane_val; break; case(14): b[s00 ] |= plane_val; break; case(15): b[s00 ] |= plane_val; break; } /* b[s00 ] |= ((((LONGLONG)a[k])>>3) & 1) << bit; */ k += 1; } } } /* ############################################################################ */ static void read_bdirect(unsigned char *infile, int a[], int n, int nqx, int nqy, unsigned char scratch[], int bit) { /* * read bit image packed 4 pixels/nybble */ /* int i; for (i = 0; i < ((nqx+1)/2) * ((nqy+1)/2); i++) { scratch[i] = input_nybble(infile); } */ input_nnybble(infile, ((nqx+1)/2) * ((nqy+1)/2), scratch); /* * insert in bitplane BIT of image A */ qtree_bitins(scratch,nqx,nqy,a,n,bit); } /* ############################################################################ */ static void read_bdirect64(unsigned char *infile, LONGLONG a[], int n, int nqx, int nqy, unsigned char scratch[], int bit) { /* * read bit image packed 4 pixels/nybble */ /* int i; for (i = 0; i < ((nqx+1)/2) * ((nqy+1)/2); i++) { scratch[i] = input_nybble(infile); } */ input_nnybble(infile, ((nqx+1)/2) * ((nqy+1)/2), scratch); /* * insert in bitplane BIT of image A */ qtree_bitins64(scratch,nqx,nqy,a,n,bit); } /* ############################################################################ */ /* * Huffman decoding for fixed codes * * Coded values range from 0-15 * * Huffman code values (hex): * * 3e, 00, 01, 08, 02, 09, 1a, 1b, * 03, 1c, 0a, 1d, 0b, 1e, 3f, 0c * * and number of bits in each code: * * 6, 3, 3, 4, 3, 4, 5, 5, * 3, 5, 4, 5, 4, 5, 6, 4 */ static int input_huffman(unsigned char *infile) { int c; /* * get first 3 bits to start */ c = input_nbits(infile,3); if (c < 4) { /* * this is all we need * return 1,2,4,8 for c=0,1,2,3 */ return(1<>bits_to_go) & 1); } /* ############################################################################ */ /* INPUT N BITS (N must be <= 8) */ static int input_nbits(unsigned char *infile, int n) { /* AND mask for retreiving the right-most n bits */ static int mask[9] = {0, 1, 3, 7, 15, 31, 63, 127, 255}; if (bits_to_go < n) { /* * need another byte's worth of bits */ buffer2 = (buffer2<<8) | (int) infile[nextchar]; nextchar++; bits_to_go += 8; } /* * now pick off the first n bits */ bits_to_go -= n; /* there was a slight gain in speed by replacing the following line */ /* return( (buffer2>>bits_to_go) & ((1<>bits_to_go) & (*(mask+n)) ); } /* ############################################################################ */ /* INPUT 4 BITS */ static int input_nybble(unsigned char *infile) { if (bits_to_go < 4) { /* * need another byte's worth of bits */ buffer2 = (buffer2<<8) | (int) infile[nextchar]; nextchar++; bits_to_go += 8; } /* * now pick off the first 4 bits */ bits_to_go -= 4; return( (buffer2>>bits_to_go) & 15 ); } /* ############################################################################ */ /* INPUT array of 4 BITS */ static int input_nnybble(unsigned char *infile, int n, unsigned char array[]) { /* copy n 4-bit nybbles from infile to the lower 4 bits of array */ int ii, kk, shift1, shift2; /* forcing byte alignment doesn;t help, and even makes it go slightly slower if (bits_to_go != 8) input_nbits(infile, bits_to_go); */ if (n == 1) { array[0] = input_nybble(infile); return(0); } if (bits_to_go == 8) { /* already have 2 full nybbles in buffer2, so backspace the infile array to reuse last char */ nextchar--; bits_to_go = 0; } /* bits_to_go now has a value in the range 0 - 7. After adding */ /* another byte, bits_to_go effectively will be in range 8 - 15 */ shift1 = bits_to_go + 4; /* shift1 will be in range 4 - 11 */ shift2 = bits_to_go; /* shift2 will be in range 0 - 7 */ kk = 0; /* special case */ if (bits_to_go == 0) { for (ii = 0; ii < n/2; ii++) { /* * refill the buffer with next byte */ buffer2 = (buffer2<<8) | (int) infile[nextchar]; nextchar++; array[kk] = (int) ((buffer2>>4) & 15); array[kk + 1] = (int) ((buffer2) & 15); /* no shift required */ kk += 2; } } else { for (ii = 0; ii < n/2; ii++) { /* * refill the buffer with next byte */ buffer2 = (buffer2<<8) | (int) infile[nextchar]; nextchar++; array[kk] = (int) ((buffer2>>shift1) & 15); array[kk + 1] = (int) ((buffer2>>shift2) & 15); kk += 2; } } if (ii * 2 != n) { /* have to read last odd byte */ array[n-1] = input_nybble(infile); } return( (buffer2>>bits_to_go) & 15 ); } healpy-1.8.1/cfitsio/getcolj.c0000654000175000017530000043137712272000775016667 0ustar zoncaplanck00000000000000/* This file, getcolj.c, contains routines that read data elements from */ /* a FITS image or table, with long data type. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffgpvj( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ long nulval, /* I - value for undefined pixels */ long *array, /* O - array of values that are returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Undefined elements will be set equal to NULVAL, unless NULVAL=0 in which case no checking for undefined values will be performed. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { long row; char cdummy; int nullcheck = 1; long nullvalue; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ nullvalue = nulval; /* set local variable */ fits_read_compressed_pixels(fptr, TLONG, firstelem, nelem, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgclj(fptr, 2, row, firstelem, nelem, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgpfj( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ long *array, /* O - array of values that are returned */ char *nularray, /* O - array of null pixel flags */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any undefined pixels in the returned array will be set = 0 and the corresponding nularray value will be set = 1. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { long row; int nullcheck = 2; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_read_compressed_pixels(fptr, TLONG, firstelem, nelem, nullcheck, NULL, array, nularray, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgclj(fptr, 2, row, firstelem, nelem, 1, 2, 0L, array, nularray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffg2dj(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ long nulval, /* set undefined pixels equal to this */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ long *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an entire 2-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any null values in the array will be set equal to the value of nulval, unless nulval = 0 in which case no null checking will be performed. */ { /* call the 3D reading routine, with the 3rd dimension = 1 */ ffg3dj(fptr, group, nulval, ncols, naxis2, naxis1, naxis2, 1, array, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffg3dj(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ long nulval, /* set undefined pixels equal to this */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG nrows, /* I - number of rows in each plane of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ LONGLONG naxis3, /* I - FITS image NAXIS3 value */ long *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an entire 3-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any null values in the array will be set equal to the value of nulval, unless nulval = 0 in which case no null checking will be performed. */ { long tablerow, ii, jj; char cdummy; int nullcheck = 1; long inc[] = {1,1,1}; LONGLONG fpixel[] = {1,1,1}, nfits, narray; LONGLONG lpixel[3], nullvalue; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ lpixel[0] = ncols; lpixel[1] = nrows; lpixel[2] = naxis3; nullvalue = nulval; /* set local variable */ fits_read_compressed_img(fptr, TLONG, fpixel, lpixel, inc, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ tablerow=maxvalue(1,group); if (ncols == naxis1 && nrows == naxis2) /* arrays have same size? */ { /* all the image pixels are contiguous, so read all at once */ ffgclj(fptr, 2, tablerow, 1, naxis1 * naxis2 * naxis3, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } if (ncols < naxis1 || nrows < naxis2) return(*status = BAD_DIMEN); nfits = 1; /* next pixel in FITS image to read */ narray = 0; /* next pixel in output array to be filled */ /* loop over naxis3 planes in the data cube */ for (jj = 0; jj < naxis3; jj++) { /* loop over the naxis2 rows in the FITS image, */ /* reading naxis1 pixels to each row */ for (ii = 0; ii < naxis2; ii++) { if (ffgclj(fptr, 2, tablerow, nfits, naxis1, 1, 1, nulval, &array[narray], &cdummy, anynul, status) > 0) return(*status); nfits += naxis1; narray += ncols; } narray += (nrows - naxis2) * ncols; } return(*status); } /*--------------------------------------------------------------------------*/ int ffgsvj(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of the column to read (1 = 1st) */ int naxis, /* I - number of dimensions in the FITS array */ long *naxes, /* I - size of each dimension */ long *blc, /* I - 'bottom left corner' of the subsection */ long *trc, /* I - 'top right corner' of the subsection */ long *inc, /* I - increment to be applied in each dimension */ long nulval, /* I - value to set undefined pixels */ long *array, /* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read a subsection of data values from an image or a table column. This routine is set up to handle a maximum of nine dimensions. */ { long ii,i0, i1,i2,i3,i4,i5,i6,i7,i8,row,rstr,rstp,rinc; long str[9],stp[9],incr[9],dir[9]; long nelem, nultyp, ninc, numcol; LONGLONG felem, dsize[10], blcll[9], trcll[9]; int hdutype, anyf; char ldummy, msg[FLEN_ERRMSG]; int nullcheck = 1; long nullvalue; if (naxis < 1 || naxis > 9) { sprintf(msg, "NAXIS = %d in call to ffgsvj is out of range", naxis); ffpmsg(msg); return(*status = BAD_DIMEN); } if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ for (ii=0; ii < naxis; ii++) { blcll[ii] = blc[ii]; trcll[ii] = trc[ii]; } nullvalue = nulval; /* set local variable */ fits_read_compressed_img(fptr, TLONG, blcll, trcll, inc, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* if this is a primary array, then the input COLNUM parameter should be interpreted as the row number, and we will alway read the image data from column 2 (any group parameters are in column 1). */ if (ffghdt(fptr, &hdutype, status) > 0) return(*status); if (hdutype == IMAGE_HDU) { /* this is a primary array, or image extension */ if (colnum == 0) { rstr = 1; rstp = 1; } else { rstr = colnum; rstp = colnum; } rinc = 1; numcol = 2; } else { /* this is a table, so the row info is in the (naxis+1) elements */ rstr = blc[naxis]; rstp = trc[naxis]; rinc = inc[naxis]; numcol = colnum; } nultyp = 1; if (anynul) *anynul = FALSE; i0 = 0; for (ii = 0; ii < 9; ii++) { str[ii] = 1; stp[ii] = 1; incr[ii] = 1; dsize[ii] = 1; dir[ii] = 1; } for (ii = 0; ii < naxis; ii++) { if (trc[ii] < blc[ii]) { if (hdutype == IMAGE_HDU) { dir[ii] = -1; } else { sprintf(msg, "ffgsvj: illegal range specified for axis %ld", ii + 1); ffpmsg(msg); return(*status = BAD_PIX_NUM); } } str[ii] = blc[ii]; stp[ii] = trc[ii]; incr[ii] = inc[ii]; dsize[ii + 1] = dsize[ii] * naxes[ii]; dsize[ii] = dsize[ii] * dir[ii]; } dsize[naxis] = dsize[naxis] * dir[naxis]; if (naxis == 1 && naxes[0] == 1) { /* This is not a vector column, so read all the rows at once */ nelem = (rstp - rstr) / rinc + 1; ninc = rinc; rstp = rstr; } else { /* have to read each row individually, in all dimensions */ nelem = (stp[0]*dir[0] - str[0]*dir[0]) / inc[0] + 1; ninc = incr[0] * dir[0]; } for (row = rstr; row <= rstp; row += rinc) { for (i8 = str[8]*dir[8]; i8 <= stp[8]*dir[8]; i8 += incr[8]) { for (i7 = str[7]*dir[7]; i7 <= stp[7]*dir[7]; i7 += incr[7]) { for (i6 = str[6]*dir[6]; i6 <= stp[6]*dir[6]; i6 += incr[6]) { for (i5 = str[5]*dir[5]; i5 <= stp[5]*dir[5]; i5 += incr[5]) { for (i4 = str[4]*dir[4]; i4 <= stp[4]*dir[4]; i4 += incr[4]) { for (i3 = str[3]*dir[3]; i3 <= stp[3]*dir[3]; i3 += incr[3]) { for (i2 = str[2]*dir[2]; i2 <= stp[2]*dir[2]; i2 += incr[2]) { for (i1 = str[1]*dir[1]; i1 <= stp[1]*dir[1]; i1 += incr[1]) { felem=str[0] + (i1 - dir[1]) * dsize[1] + (i2 - dir[2]) * dsize[2] + (i3 - dir[3]) * dsize[3] + (i4 - dir[4]) * dsize[4] + (i5 - dir[5]) * dsize[5] + (i6 - dir[6]) * dsize[6] + (i7 - dir[7]) * dsize[7] + (i8 - dir[8]) * dsize[8]; if ( ffgclj(fptr, numcol, row, felem, nelem, ninc, nultyp, nulval, &array[i0], &ldummy, &anyf, status) > 0) return(*status); if (anyf && anynul) *anynul = TRUE; i0 += nelem; } } } } } } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffgsfj(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of the column to read (1 = 1st) */ int naxis, /* I - number of dimensions in the FITS array */ long *naxes, /* I - size of each dimension */ long *blc, /* I - 'bottom left corner' of the subsection */ long *trc, /* I - 'top right corner' of the subsection */ long *inc, /* I - increment to be applied in each dimension */ long *array, /* O - array to be filled and returned */ char *flagval, /* O - set to 1 if corresponding value is null */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read a subsection of data values from an image or a table column. This routine is set up to handle a maximum of nine dimensions. */ { long ii,i0, i1,i2,i3,i4,i5,i6,i7,i8,row,rstr,rstp,rinc; long str[9],stp[9],incr[9],dsize[10]; LONGLONG blcll[9], trcll[9]; long felem, nelem, nultyp, ninc, numcol; long nulval = 0; int hdutype, anyf; char msg[FLEN_ERRMSG]; int nullcheck = 2; if (naxis < 1 || naxis > 9) { sprintf(msg, "NAXIS = %d in call to ffgsvj is out of range", naxis); ffpmsg(msg); return(*status = BAD_DIMEN); } if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ for (ii=0; ii < naxis; ii++) { blcll[ii] = blc[ii]; trcll[ii] = trc[ii]; } fits_read_compressed_img(fptr, TLONG, blcll, trcll, inc, nullcheck, NULL, array, flagval, anynul, status); return(*status); } /* if this is a primary array, then the input COLNUM parameter should be interpreted as the row number, and we will alway read the image data from column 2 (any group parameters are in column 1). */ if (ffghdt(fptr, &hdutype, status) > 0) return(*status); if (hdutype == IMAGE_HDU) { /* this is a primary array, or image extension */ if (colnum == 0) { rstr = 1; rstp = 1; } else { rstr = colnum; rstp = colnum; } rinc = 1; numcol = 2; } else { /* this is a table, so the row info is in the (naxis+1) elements */ rstr = blc[naxis]; rstp = trc[naxis]; rinc = inc[naxis]; numcol = colnum; } nultyp = 2; if (anynul) *anynul = FALSE; i0 = 0; for (ii = 0; ii < 9; ii++) { str[ii] = 1; stp[ii] = 1; incr[ii] = 1; dsize[ii] = 1; } for (ii = 0; ii < naxis; ii++) { if (trc[ii] < blc[ii]) { sprintf(msg, "ffgsvj: illegal range specified for axis %ld", ii + 1); ffpmsg(msg); return(*status = BAD_PIX_NUM); } str[ii] = blc[ii]; stp[ii] = trc[ii]; incr[ii] = inc[ii]; dsize[ii + 1] = dsize[ii] * naxes[ii]; } if (naxis == 1 && naxes[0] == 1) { /* This is not a vector column, so read all the rows at once */ nelem = (rstp - rstr) / rinc + 1; ninc = rinc; rstp = rstr; } else { /* have to read each row individually, in all dimensions */ nelem = (stp[0] - str[0]) / inc[0] + 1; ninc = incr[0]; } for (row = rstr; row <= rstp; row += rinc) { for (i8 = str[8]; i8 <= stp[8]; i8 += incr[8]) { for (i7 = str[7]; i7 <= stp[7]; i7 += incr[7]) { for (i6 = str[6]; i6 <= stp[6]; i6 += incr[6]) { for (i5 = str[5]; i5 <= stp[5]; i5 += incr[5]) { for (i4 = str[4]; i4 <= stp[4]; i4 += incr[4]) { for (i3 = str[3]; i3 <= stp[3]; i3 += incr[3]) { for (i2 = str[2]; i2 <= stp[2]; i2 += incr[2]) { for (i1 = str[1]; i1 <= stp[1]; i1 += incr[1]) { felem=str[0] + (i1 - 1) * dsize[1] + (i2 - 1) * dsize[2] + (i3 - 1) * dsize[3] + (i4 - 1) * dsize[4] + (i5 - 1) * dsize[5] + (i6 - 1) * dsize[6] + (i7 - 1) * dsize[7] + (i8 - 1) * dsize[8]; if ( ffgclj(fptr, numcol, row, felem, nelem, ninc, nultyp, nulval, &array[i0], &flagval[i0], &anyf, status) > 0) return(*status); if (anyf && anynul) *anynul = TRUE; i0 += nelem; } } } } } } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffggpj( fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ long firstelem, /* I - first vector element to read (1 = 1st) */ long nelem, /* I - number of values to read */ long *array, /* O - array of values that are returned */ int *status) /* IO - error status */ /* Read an array of group parameters from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). */ { long row; int idummy; char cdummy; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgclj(fptr, 1, row, firstelem, nelem, 1, 1, 0L, array, &cdummy, &idummy, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcvj(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ long nulval, /* I - value for null pixels */ long *array, /* O - array of values that are read */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Any undefined pixels will be set equal to the value of 'nulval' unless nulval = 0 in which case no checks for undefined pixels will be made. */ { char cdummy; ffgclj(fptr, colnum, firstrow, firstelem, nelem, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcfj(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ long *array, /* O - array of values that are read */ char *nularray, /* O - array of flags: 1 if null pixel; else 0 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Nularray will be set = 1 if the corresponding array pixel is undefined, otherwise nularray will = 0. */ { long dummy = 0; ffgclj(fptr, colnum, firstrow, firstelem, nelem, 1, 2, dummy, array, nularray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgclj( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ long elemincre, /* I - pixel increment; e.g., 2 = every other */ int nultyp, /* I - null value handling code: */ /* 1: set undefined pixels = nulval */ /* 2: set nularray=1 for undefined pixels */ long nulval, /* I - value for null pixels if nultyp = 1 */ long *array, /* O - array of values that are read */ char *nularray, /* O - array of flags = 1 if nultyp = 2 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. The column number may refer to a real column in an ASCII or binary table, or it may refer be a virtual column in a 1 or more grouped FITS primary array or image extension. FITSIO treats a primary array as a binary table with 2 vector columns: the first column contains the group parameters (often with length = 0) and the second column contains the array of image pixels. Each row of the table represents a group in the case of multigroup FITS images. The output array of values will be converted from the datatype of the column and will be scaled by the FITS TSCALn and TZEROn values if necessary. */ { double scale, zero, power = 1., dtemp; int tcode, maxelem2, hdutype, xcode, decimals; long twidth, incre; long ii, xwidth, ntodo; int convert, nulcheck, readcheck = 0; LONGLONG repeat, startpos, elemnum, readptr, tnull; LONGLONG rowlen, rownum, remain, next, rowincre, maxelem; char tform[20]; char message[81]; char snull[20]; /* the FITS null value if reading from ASCII table */ double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */ void *buffer; if (*status > 0 || nelem == 0) /* inherit input status value if > 0 */ return(*status); buffer = cbuff; if (anynul) *anynul = 0; if (nultyp == 2) memset(nularray, 0, (size_t) nelem); /* initialize nullarray */ /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if (elemincre < 0) readcheck = -1; /* don't do range checking in this case */ if (ffgcprll(fptr, colnum, firstrow, firstelem, nelem, readcheck, &scale, &zero, tform, &twidth, &tcode, &maxelem2, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0 ) return(*status); maxelem = maxelem2; incre *= elemincre; /* multiply incre to just get every nth pixel */ if (tcode == TSTRING) /* setup for ASCII tables */ { /* get the number of implied decimal places if no explicit decmal point */ ffasfm(tform, &xcode, &xwidth, &decimals, status); for(ii = 0; ii < decimals; ii++) power *= 10.; } /*------------------------------------------------------------------*/ /* Decide whether to check for null values in the input FITS file: */ /*------------------------------------------------------------------*/ nulcheck = nultyp; /* by default check for null values in the FITS file */ if (nultyp == 1 && nulval == 0) nulcheck = 0; /* calling routine does not want to check for nulls */ else if (tcode%10 == 1 && /* if reading an integer column, and */ tnull == NULL_UNDEFINED) /* if a null value is not defined, */ nulcheck = 0; /* then do not check for null values. */ else if (tcode == TSHORT && (tnull > SHRT_MAX || tnull < SHRT_MIN) ) nulcheck = 0; /* Impossible null value */ else if (tcode == TBYTE && (tnull > 255 || tnull < 0) ) nulcheck = 0; /* Impossible null value */ else if (tcode == TSTRING && snull[0] == ASCII_NULL_UNDEFINED) nulcheck = 0; /*----------------------------------------------------------------------*/ /* If FITS column and output data array have same datatype, then we do */ /* not need to use a temporary buffer to store intermediate datatype. */ /*----------------------------------------------------------------------*/ convert = 1; if (tcode == TLONG) /* Special Case: */ { /* no type convertion required, so read */ /* data directly into output buffer. */ if (nelem < (LONGLONG)INT32_MAX/8) { maxelem = nelem; } else { /* divide by 8 instead of 4 in case sizeof(long) = 8 */ maxelem = INT32_MAX/8; } if (nulcheck == 0 && scale == 1. && zero == 0. && LONGSIZE == 32) convert = 0; /* no need to scale data or find nulls */ } /*---------------------------------------------------------------------*/ /* Now read the pixels from the FITS column. If the column does not */ /* have the same datatype as the output array, then we have to read */ /* the raw values into a temporary buffer (of limited size). In */ /* the case of a vector colum read only 1 vector of values at a time */ /* then skip to the next row if more values need to be read. */ /* After reading the raw values, then call the fffXXYY routine to (1) */ /* test for undefined values, (2) convert the datatype if necessary, */ /* and (3) scale the values by the FITS TSCALn and TZEROn linear */ /* scaling parameters. */ /*---------------------------------------------------------------------*/ remain = nelem; /* remaining number of values to read */ next = 0; /* next element in array to be read */ rownum = 0; /* row number, relative to firstrow */ while (remain) { /* limit the number of pixels to read at one time to the number that will fit in the buffer or to the number of pixels that remain in the current vector, which ever is smaller. */ ntodo = (long) minvalue(remain, maxelem); if (elemincre >= 0) { ntodo = (long) minvalue(ntodo, ((repeat - elemnum - 1)/elemincre +1)); } else { ntodo = (long) minvalue(ntodo, (elemnum/(-elemincre) +1)); } readptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * (incre / elemincre)); switch (tcode) { case (TLONG): ffgi4b(fptr, readptr, ntodo, incre, (INT32BIT *) &array[next], status); if (convert) fffi4i4((INT32BIT *) &array[next], ntodo, scale, zero, nulcheck, (INT32BIT) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TLONGLONG): ffgi8b(fptr, readptr, ntodo, incre, (long *) buffer, status); fffi8i4((LONGLONG *) buffer, ntodo, scale, zero, nulcheck, tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TBYTE): ffgi1b(fptr, readptr, ntodo, incre, (unsigned char *) buffer, status); fffi1i4((unsigned char *) buffer, ntodo, scale, zero, nulcheck, (unsigned char) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TSHORT): ffgi2b(fptr, readptr, ntodo, incre, (short *) buffer, status); fffi2i4((short *) buffer, ntodo, scale, zero, nulcheck, (short) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TFLOAT): ffgr4b(fptr, readptr, ntodo, incre, (float *) buffer, status); fffr4i4((float *) buffer, ntodo, scale, zero, nulcheck, nulval, &nularray[next], anynul, &array[next], status); break; case (TDOUBLE): ffgr8b(fptr, readptr, ntodo, incre, (double *) buffer, status); fffr8i4((double *) buffer, ntodo, scale, zero, nulcheck, nulval, &nularray[next], anynul, &array[next], status); break; case (TSTRING): ffmbyt(fptr, readptr, REPORT_EOF, status); if (incre == twidth) /* contiguous bytes */ ffgbyt(fptr, ntodo * twidth, buffer, status); else ffgbytoff(fptr, twidth, ntodo, incre - twidth, buffer, status); fffstri4((char *) buffer, ntodo, scale, zero, twidth, power, nulcheck, snull, nulval, &nularray[next], anynul, &array[next], status); break; default: /* error trap for invalid column format */ sprintf(message, "Cannot read numbers from column %d which has format %s", colnum, tform); ffpmsg(message); if (hdutype == ASCII_TBL) return(*status = BAD_ATABLE_FORMAT); else return(*status = BAD_BTABLE_FORMAT); } /* End of switch block */ /*-------------------------*/ /* Check for fatal error */ /*-------------------------*/ if (*status > 0) /* test for error during previous read operation */ { dtemp = (double) next; if (hdutype > 0) sprintf(message, "Error reading elements %.0f thru %.0f from column %d (ffgclj).", dtemp+1., dtemp+ntodo, colnum); else sprintf(message, "Error reading elements %.0f thru %.0f from image (ffgclj).", dtemp+1., dtemp+ntodo); ffpmsg(message); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain -= ntodo; if (remain) { next += ntodo; elemnum = elemnum + (ntodo * elemincre); if (elemnum >= repeat) /* completed a row; start on later row */ { rowincre = elemnum / repeat; rownum += rowincre; elemnum = elemnum - (rowincre * repeat); } else if (elemnum < 0) /* completed a row; start on a previous row */ { rowincre = (-elemnum - 1) / repeat + 1; rownum -= rowincre; elemnum = (rowincre * repeat) + elemnum; } } } /* End of main while Loop */ /*--------------------------------*/ /* check for numerical overflow */ /*--------------------------------*/ if (*status == OVERFLOW_ERR) { ffpmsg( "Numerical overflow during type conversion while reading FITS data."); *status = NUM_OVERFLOW; } return(*status); } /*--------------------------------------------------------------------------*/ int fffi1i4(unsigned char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ unsigned char tnull, /* I - value of FITS TNULLn keyword if any */ long nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ long *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) output[ii] = (long) input[ii]; /* copy input to output */ } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONG_MIN; } else if (dvalue > DLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONG_MAX; } else output[ii] = (long) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = (long) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONG_MIN; } else if (dvalue > DLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONG_MAX; } else output[ii] = (long) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi2i4(short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ short tnull, /* I - value of FITS TNULLn keyword if any */ long nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ long *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) output[ii] = (long) input[ii]; /* copy input to output */ } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONG_MIN; } else if (dvalue > DLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONG_MAX; } else output[ii] = (long) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = (long) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONG_MIN; } else if (dvalue > DLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONG_MAX; } else output[ii] = (long) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi4i4(INT32BIT *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ INT32BIT tnull, /* I - value of FITS TNULLn keyword if any */ long nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ long *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; Process the array of data in reverse order, to handle the case where the input data is 4-bytes and the output is 8-bytes and the conversion is being done in place in the same array. */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = ntodo - 1; ii >= 0; ii--) output[ii] = (long) input[ii]; /* copy input to output */ } else /* must scale the data */ { for (ii = ntodo - 1; ii >= 0; ii--) { dvalue = input[ii] * scale + zero; if (dvalue < DLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONG_MIN; } else if (dvalue > DLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONG_MAX; } else output[ii] = (long) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = ntodo - 1; ii >= 0; ii--) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = input[ii]; } } else /* must scale the data */ { for (ii = ntodo - 1; ii >= 0; ii--) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONG_MIN; } else if (dvalue > DLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONG_MAX; } else output[ii] = (long) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi8i4(LONGLONG *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ LONGLONG tnull, /* I - value of FITS TNULLn keyword if any */ long nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ long *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < LONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONG_MIN; } else if (input[ii] > LONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONG_MAX; } else output[ii] = (long) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONG_MIN; } else if (dvalue > DLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONG_MAX; } else output[ii] = (long) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { if (input[ii] < LONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONG_MIN; } else if (input[ii] > LONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONG_MAX; } else output[ii] = (long) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONG_MIN; } else if (dvalue > DLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONG_MAX; } else output[ii] = (long) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffr4i4(float *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ long nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ long *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to NaN. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; short *sptr, iret; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < DLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONG_MIN; } else if (input[ii] > DLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONG_MAX; } else output[ii] = (long) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONG_MIN; } else if (dvalue > DLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONG_MAX; } else output[ii] = (long) dvalue; } } } else /* must check for null values */ { sptr = (short *) input; #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS sptr++; /* point to MSBs */ #endif if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++, sptr += 2) { if (0 != (iret = fnan(*sptr) ) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ output[ii] = 0; } else { if (input[ii] < DLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONG_MIN; } else if (input[ii] > DLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONG_MAX; } else output[ii] = (long) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++, sptr += 2) { if (0 != (iret = fnan(*sptr) ) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ { if (zero < DLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONG_MIN; } else if (zero > DLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONG_MAX; } else output[ii] = (long) zero; } } else { dvalue = input[ii] * scale + zero; if (dvalue < DLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONG_MIN; } else if (dvalue > DLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONG_MAX; } else output[ii] = (long) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffr8i4(double *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ long nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ long *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to NaN. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; short *sptr, iret; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < DLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONG_MIN; } else if (input[ii] > DLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONG_MAX; } else output[ii] = (long) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONG_MIN; } else if (dvalue > DLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONG_MAX; } else output[ii] = (long) dvalue; } } } else /* must check for null values */ { sptr = (short *) input; #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS sptr += 3; /* point to MSBs */ #endif if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++, sptr += 4) { if (0 != (iret = dnan(*sptr)) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ output[ii] = 0; } else { if (input[ii] < DLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONG_MIN; } else if (input[ii] > DLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONG_MAX; } else output[ii] = (long) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++, sptr += 4) { if (0 != (iret = dnan(*sptr)) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ { if (zero < DLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONG_MIN; } else if (zero > DLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONG_MAX; } else output[ii] = (long) zero; } } else { dvalue = input[ii] * scale + zero; if (dvalue < DLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONG_MIN; } else if (dvalue > DLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONG_MAX; } else output[ii] = (long) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffstri4(char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ long twidth, /* I - width of each substring of chars */ double implipower, /* I - power of 10 of implied decimal */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ char *snull, /* I - value of FITS null string, if any */ long nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ long *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to snull. If nullcheck= 0, then no special checking for nulls is performed. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { int nullen; long ii; double dvalue; char *cstring, message[81]; char *cptr, *tpos; char tempstore, chrzero = '0'; double val, power; int exponent, sign, esign, decpt; nullen = strlen(snull); cptr = input; /* pointer to start of input string */ for (ii = 0; ii < ntodo; ii++) { cstring = cptr; /* temporarily insert a null terminator at end of the string */ tpos = cptr + twidth; tempstore = *tpos; *tpos = 0; /* check if null value is defined, and if the */ /* column string is identical to the null string */ if (snull[0] != ASCII_NULL_UNDEFINED && !strncmp(snull, cptr, nullen) ) { if (nullcheck) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } cptr += twidth; } else { /* value is not the null value, so decode it */ /* remove any embedded blank characters from the string */ decpt = 0; sign = 1; val = 0.; power = 1.; exponent = 0; esign = 1; while (*cptr == ' ') /* skip leading blanks */ cptr++; if (*cptr == '-' || *cptr == '+') /* check for leading sign */ { if (*cptr == '-') sign = -1; cptr++; while (*cptr == ' ') /* skip blanks between sign and value */ cptr++; } while (*cptr >= '0' && *cptr <= '9') { val = val * 10. + *cptr - chrzero; /* accumulate the value */ cptr++; while (*cptr == ' ') /* skip embedded blanks in the value */ cptr++; } if (*cptr == '.' || *cptr == ',') /* check for decimal point */ { decpt = 1; /* set flag to show there was a decimal point */ cptr++; while (*cptr == ' ') /* skip any blanks */ cptr++; while (*cptr >= '0' && *cptr <= '9') { val = val * 10. + *cptr - chrzero; /* accumulate the value */ power = power * 10.; cptr++; while (*cptr == ' ') /* skip embedded blanks in the value */ cptr++; } } if (*cptr == 'E' || *cptr == 'D') /* check for exponent */ { cptr++; while (*cptr == ' ') /* skip blanks */ cptr++; if (*cptr == '-' || *cptr == '+') /* check for exponent sign */ { if (*cptr == '-') esign = -1; cptr++; while (*cptr == ' ') /* skip blanks between sign and exp */ cptr++; } while (*cptr >= '0' && *cptr <= '9') { exponent = exponent * 10 + *cptr - chrzero; /* accumulate exp */ cptr++; while (*cptr == ' ') /* skip embedded blanks */ cptr++; } } if (*cptr != 0) /* should end up at the null terminator */ { sprintf(message, "Cannot read number from ASCII table"); ffpmsg(message); sprintf(message, "Column field = %s.", cstring); ffpmsg(message); /* restore the char that was overwritten by the null */ *tpos = tempstore; return(*status = BAD_C2D); } if (!decpt) /* if no explicit decimal, use implied */ power = implipower; dvalue = (sign * val / power) * pow(10., (double) (esign * exponent)); dvalue = dvalue * scale + zero; /* apply the scaling */ if (dvalue < DLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONG_MIN; } else if (dvalue > DLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONG_MAX; } else output[ii] = (long) dvalue; } /* restore the char that was overwritten by the null */ *tpos = tempstore; } return(*status); } /* ======================================================================== */ /* the following routines support the 'long long' data type */ /* ======================================================================== */ /*--------------------------------------------------------------------------*/ int ffgpvjj(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ LONGLONG nulval, /* I - value for undefined pixels */ LONGLONG *array, /* O - array of values that are returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Undefined elements will be set equal to NULVAL, unless NULVAL=0 in which case no checking for undefined values will be performed. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { long row; char cdummy; int nullcheck = 1; LONGLONG nullvalue; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ nullvalue = nulval; /* set local variable */ fits_read_compressed_pixels(fptr, TLONGLONG, firstelem, nelem, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgcljj(fptr, 2, row, firstelem, nelem, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgpfjj(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ LONGLONG *array, /* O - array of values that are returned */ char *nularray, /* O - array of null pixel flags */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any undefined pixels in the returned array will be set = 0 and the corresponding nularray value will be set = 1. ANYNUL is returned with a value of .true. if any pixels are undefined. */ { long row; int nullcheck = 2; LONGLONG dummy = 0; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_read_compressed_pixels(fptr, TLONGLONG, firstelem, nelem, nullcheck, NULL, array, nularray, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgcljj(fptr, 2, row, firstelem, nelem, 1, 2, dummy, array, nularray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffg2djj(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ LONGLONG nulval ,/* set undefined pixels equal to this */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ LONGLONG *array,/* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an entire 2-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any null values in the array will be set equal to the value of nulval, unless nulval = 0 in which case no null checking will be performed. */ { /* call the 3D reading routine, with the 3rd dimension = 1 */ ffg3djj(fptr, group, nulval, ncols, naxis2, naxis1, naxis2, 1, array, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffg3djj(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ LONGLONG nulval, /* set undefined pixels equal to this */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG nrows, /* I - number of rows in each plane of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ LONGLONG naxis3, /* I - FITS image NAXIS3 value */ LONGLONG *array,/* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an entire 3-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). Any null values in the array will be set equal to the value of nulval, unless nulval = 0 in which case no null checking will be performed. */ { long tablerow, ii, jj; char cdummy; int nullcheck = 1; long inc[] = {1,1,1}; LONGLONG fpixel[] = {1,1,1}, nfits, narray; LONGLONG lpixel[3]; LONGLONG nullvalue; if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ lpixel[0] = ncols; lpixel[1] = nrows; lpixel[2] = naxis3; nullvalue = nulval; /* set local variable */ fits_read_compressed_img(fptr, TLONGLONG, fpixel, lpixel, inc, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ tablerow=maxvalue(1,group); if (ncols == naxis1 && nrows == naxis2) /* arrays have same size? */ { /* all the image pixels are contiguous, so read all at once */ ffgcljj(fptr, 2, tablerow, 1, naxis1 * naxis2 * naxis3, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } if (ncols < naxis1 || nrows < naxis2) return(*status = BAD_DIMEN); nfits = 1; /* next pixel in FITS image to read */ narray = 0; /* next pixel in output array to be filled */ /* loop over naxis3 planes in the data cube */ for (jj = 0; jj < naxis3; jj++) { /* loop over the naxis2 rows in the FITS image, */ /* reading naxis1 pixels to each row */ for (ii = 0; ii < naxis2; ii++) { if (ffgcljj(fptr, 2, tablerow, nfits, naxis1, 1, 1, nulval, &array[narray], &cdummy, anynul, status) > 0) return(*status); nfits += naxis1; narray += ncols; } narray += (nrows - naxis2) * ncols; } return(*status); } /*--------------------------------------------------------------------------*/ int ffgsvjj(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of the column to read (1 = 1st) */ int naxis, /* I - number of dimensions in the FITS array */ long *naxes, /* I - size of each dimension */ long *blc, /* I - 'bottom left corner' of the subsection */ long *trc, /* I - 'top right corner' of the subsection */ long *inc, /* I - increment to be applied in each dimension */ LONGLONG nulval,/* I - value to set undefined pixels */ LONGLONG *array,/* O - array to be filled and returned */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read a subsection of data values from an image or a table column. This routine is set up to handle a maximum of nine dimensions. */ { long ii,i0, i1,i2,i3,i4,i5,i6,i7,i8,row,rstr,rstp,rinc; long str[9],stp[9],incr[9],dir[9]; long nelem, nultyp, ninc, numcol; LONGLONG felem, dsize[10], blcll[9], trcll[9]; int hdutype, anyf; char ldummy, msg[FLEN_ERRMSG]; int nullcheck = 1; LONGLONG nullvalue; if (naxis < 1 || naxis > 9) { sprintf(msg, "NAXIS = %d in call to ffgsvj is out of range", naxis); ffpmsg(msg); return(*status = BAD_DIMEN); } if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ for (ii=0; ii < naxis; ii++) { blcll[ii] = blc[ii]; trcll[ii] = trc[ii]; } nullvalue = nulval; /* set local variable */ fits_read_compressed_img(fptr, TLONGLONG, blcll, trcll, inc, nullcheck, &nullvalue, array, NULL, anynul, status); return(*status); } /* if this is a primary array, then the input COLNUM parameter should be interpreted as the row number, and we will alway read the image data from column 2 (any group parameters are in column 1). */ if (ffghdt(fptr, &hdutype, status) > 0) return(*status); if (hdutype == IMAGE_HDU) { /* this is a primary array, or image extension */ if (colnum == 0) { rstr = 1; rstp = 1; } else { rstr = colnum; rstp = colnum; } rinc = 1; numcol = 2; } else { /* this is a table, so the row info is in the (naxis+1) elements */ rstr = blc[naxis]; rstp = trc[naxis]; rinc = inc[naxis]; numcol = colnum; } nultyp = 1; if (anynul) *anynul = FALSE; i0 = 0; for (ii = 0; ii < 9; ii++) { str[ii] = 1; stp[ii] = 1; incr[ii] = 1; dsize[ii] = 1; dir[ii] = 1; } for (ii = 0; ii < naxis; ii++) { if (trc[ii] < blc[ii]) { if (hdutype == IMAGE_HDU) { dir[ii] = -1; } else { sprintf(msg, "ffgsvj: illegal range specified for axis %ld", ii + 1); ffpmsg(msg); return(*status = BAD_PIX_NUM); } } str[ii] = blc[ii]; stp[ii] = trc[ii]; incr[ii] = inc[ii]; dsize[ii + 1] = dsize[ii] * naxes[ii]; dsize[ii] = dsize[ii] * dir[ii]; } dsize[naxis] = dsize[naxis] * dir[naxis]; if (naxis == 1 && naxes[0] == 1) { /* This is not a vector column, so read all the rows at once */ nelem = (rstp - rstr) / rinc + 1; ninc = rinc; rstp = rstr; } else { /* have to read each row individually, in all dimensions */ nelem = (stp[0]*dir[0] - str[0]*dir[0]) / inc[0] + 1; ninc = incr[0] * dir[0]; } for (row = rstr; row <= rstp; row += rinc) { for (i8 = str[8]*dir[8]; i8 <= stp[8]*dir[8]; i8 += incr[8]) { for (i7 = str[7]*dir[7]; i7 <= stp[7]*dir[7]; i7 += incr[7]) { for (i6 = str[6]*dir[6]; i6 <= stp[6]*dir[6]; i6 += incr[6]) { for (i5 = str[5]*dir[5]; i5 <= stp[5]*dir[5]; i5 += incr[5]) { for (i4 = str[4]*dir[4]; i4 <= stp[4]*dir[4]; i4 += incr[4]) { for (i3 = str[3]*dir[3]; i3 <= stp[3]*dir[3]; i3 += incr[3]) { for (i2 = str[2]*dir[2]; i2 <= stp[2]*dir[2]; i2 += incr[2]) { for (i1 = str[1]*dir[1]; i1 <= stp[1]*dir[1]; i1 += incr[1]) { felem=str[0] + (i1 - dir[1]) * dsize[1] + (i2 - dir[2]) * dsize[2] + (i3 - dir[3]) * dsize[3] + (i4 - dir[4]) * dsize[4] + (i5 - dir[5]) * dsize[5] + (i6 - dir[6]) * dsize[6] + (i7 - dir[7]) * dsize[7] + (i8 - dir[8]) * dsize[8]; if ( ffgcljj(fptr, numcol, row, felem, nelem, ninc, nultyp, nulval, &array[i0], &ldummy, &anyf, status) > 0) return(*status); if (anyf && anynul) *anynul = TRUE; i0 += nelem; } } } } } } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffgsfjj(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of the column to read (1 = 1st) */ int naxis, /* I - number of dimensions in the FITS array */ long *naxes, /* I - size of each dimension */ long *blc, /* I - 'bottom left corner' of the subsection */ long *trc, /* I - 'top right corner' of the subsection */ long *inc, /* I - increment to be applied in each dimension */ LONGLONG *array,/* O - array to be filled and returned */ char *flagval, /* O - set to 1 if corresponding value is null */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read a subsection of data values from an image or a table column. This routine is set up to handle a maximum of nine dimensions. */ { long ii,i0, i1,i2,i3,i4,i5,i6,i7,i8,row,rstr,rstp,rinc; long str[9],stp[9],incr[9],dsize[10]; LONGLONG blcll[9], trcll[9]; long felem, nelem, nultyp, ninc, numcol; LONGLONG nulval = 0; int hdutype, anyf; char msg[FLEN_ERRMSG]; int nullcheck = 2; if (naxis < 1 || naxis > 9) { sprintf(msg, "NAXIS = %d in call to ffgsvj is out of range", naxis); ffpmsg(msg); return(*status = BAD_DIMEN); } if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ for (ii=0; ii < naxis; ii++) { blcll[ii] = blc[ii]; trcll[ii] = trc[ii]; } fits_read_compressed_img(fptr, TLONGLONG, blcll, trcll, inc, nullcheck, NULL, array, flagval, anynul, status); return(*status); } /* if this is a primary array, then the input COLNUM parameter should be interpreted as the row number, and we will alway read the image data from column 2 (any group parameters are in column 1). */ if (ffghdt(fptr, &hdutype, status) > 0) return(*status); if (hdutype == IMAGE_HDU) { /* this is a primary array, or image extension */ if (colnum == 0) { rstr = 1; rstp = 1; } else { rstr = colnum; rstp = colnum; } rinc = 1; numcol = 2; } else { /* this is a table, so the row info is in the (naxis+1) elements */ rstr = blc[naxis]; rstp = trc[naxis]; rinc = inc[naxis]; numcol = colnum; } nultyp = 2; if (anynul) *anynul = FALSE; i0 = 0; for (ii = 0; ii < 9; ii++) { str[ii] = 1; stp[ii] = 1; incr[ii] = 1; dsize[ii] = 1; } for (ii = 0; ii < naxis; ii++) { if (trc[ii] < blc[ii]) { sprintf(msg, "ffgsvj: illegal range specified for axis %ld", ii + 1); ffpmsg(msg); return(*status = BAD_PIX_NUM); } str[ii] = blc[ii]; stp[ii] = trc[ii]; incr[ii] = inc[ii]; dsize[ii + 1] = dsize[ii] * naxes[ii]; } if (naxis == 1 && naxes[0] == 1) { /* This is not a vector column, so read all the rows at once */ nelem = (rstp - rstr) / rinc + 1; ninc = rinc; rstp = rstr; } else { /* have to read each row individually, in all dimensions */ nelem = (stp[0] - str[0]) / inc[0] + 1; ninc = incr[0]; } for (row = rstr; row <= rstp; row += rinc) { for (i8 = str[8]; i8 <= stp[8]; i8 += incr[8]) { for (i7 = str[7]; i7 <= stp[7]; i7 += incr[7]) { for (i6 = str[6]; i6 <= stp[6]; i6 += incr[6]) { for (i5 = str[5]; i5 <= stp[5]; i5 += incr[5]) { for (i4 = str[4]; i4 <= stp[4]; i4 += incr[4]) { for (i3 = str[3]; i3 <= stp[3]; i3 += incr[3]) { for (i2 = str[2]; i2 <= stp[2]; i2 += incr[2]) { for (i1 = str[1]; i1 <= stp[1]; i1 += incr[1]) { felem=str[0] + (i1 - 1) * dsize[1] + (i2 - 1) * dsize[2] + (i3 - 1) * dsize[3] + (i4 - 1) * dsize[4] + (i5 - 1) * dsize[5] + (i6 - 1) * dsize[6] + (i7 - 1) * dsize[7] + (i8 - 1) * dsize[8]; if ( ffgcljj(fptr, numcol, row, felem, nelem, ninc, nultyp, nulval, &array[i0], &flagval[i0], &anyf, status) > 0) return(*status); if (anyf && anynul) *anynul = TRUE; i0 += nelem; } } } } } } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffggpjj(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to read (1 = 1st group) */ long firstelem, /* I - first vector element to read (1 = 1st) */ long nelem, /* I - number of values to read */ LONGLONG *array, /* O - array of values that are returned */ int *status) /* IO - error status */ /* Read an array of group parameters from the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being read). */ { long row; int idummy; char cdummy; LONGLONG dummy = 0; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffgcljj(fptr, 1, row, firstelem, nelem, 1, 1, dummy, array, &cdummy, &idummy, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcvjj(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ LONGLONG nulval, /* I - value for null pixels */ LONGLONG *array, /* O - array of values that are read */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Any undefined pixels will be set equal to the value of 'nulval' unless nulval = 0 in which case no checks for undefined pixels will be made. */ { char cdummy; ffgcljj(fptr, colnum, firstrow, firstelem, nelem, 1, 1, nulval, array, &cdummy, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcfjj(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ LONGLONG *array, /* O - array of values that are read */ char *nularray, /* O - array of flags: 1 if null pixel; else 0 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. Automatic datatype conversion will be performed if the datatype of the column does not match the datatype of the array parameter. The output values will be scaled by the FITS TSCALn and TZEROn values if these values have been defined. Nularray will be set = 1 if the corresponding array pixel is undefined, otherwise nularray will = 0. */ { LONGLONG dummy = 0; ffgcljj(fptr, colnum, firstrow, firstelem, nelem, 1, 2, dummy, array, nularray, anynul, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffgcljj( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to read (1 = 1st col) */ LONGLONG firstrow, /* I - first row to read (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to read (1 = 1st) */ LONGLONG nelem, /* I - number of values to read */ long elemincre, /* I - pixel increment; e.g., 2 = every other */ int nultyp, /* I - null value handling code: */ /* 1: set undefined pixels = nulval */ /* 2: set nularray=1 for undefined pixels */ LONGLONG nulval, /* I - value for null pixels if nultyp = 1 */ LONGLONG *array, /* O - array of values that are read */ char *nularray, /* O - array of flags = 1 if nultyp = 2 */ int *anynul, /* O - set to 1 if any values are null; else 0 */ int *status) /* IO - error status */ /* Read an array of values from a column in the current FITS HDU. The column number may refer to a real column in an ASCII or binary table, or it may refer be a virtual column in a 1 or more grouped FITS primary array or image extension. FITSIO treats a primary array as a binary table with 2 vector columns: the first column contains the group parameters (often with length = 0) and the second column contains the array of image pixels. Each row of the table represents a group in the case of multigroup FITS images. The output array of values will be converted from the datatype of the column and will be scaled by the FITS TSCALn and TZEROn values if necessary. */ { double scale, zero, power = 1., dtemp; int tcode, maxelem2, hdutype, xcode, decimals; long twidth, incre; long ii, xwidth, ntodo; int convert, nulcheck, readcheck = 0; LONGLONG repeat, startpos, elemnum, readptr, tnull; LONGLONG rowlen, rownum, remain, next, rowincre, maxelem; char tform[20]; char message[81]; char snull[20]; /* the FITS null value if reading from ASCII table */ double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */ void *buffer; if (*status > 0 || nelem == 0) /* inherit input status value if > 0 */ return(*status); buffer = cbuff; if (anynul) *anynul = 0; if (nultyp == 2) memset(nularray, 0, (size_t) nelem); /* initialize nullarray */ /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if (elemincre < 0) readcheck = -1; /* don't do range checking in this case */ if (ffgcprll(fptr, colnum, firstrow, firstelem, nelem, readcheck, &scale, &zero, tform, &twidth, &tcode, &maxelem2, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0 ) return(*status); maxelem = maxelem2; incre *= elemincre; /* multiply incre to just get every nth pixel */ if (tcode == TSTRING) /* setup for ASCII tables */ { /* get the number of implied decimal places if no explicit decmal point */ ffasfm(tform, &xcode, &xwidth, &decimals, status); for(ii = 0; ii < decimals; ii++) power *= 10.; } /*------------------------------------------------------------------*/ /* Decide whether to check for null values in the input FITS file: */ /*------------------------------------------------------------------*/ nulcheck = nultyp; /* by default check for null values in the FITS file */ if (nultyp == 1 && nulval == 0) nulcheck = 0; /* calling routine does not want to check for nulls */ else if (tcode%10 == 1 && /* if reading an integer column, and */ tnull == NULL_UNDEFINED) /* if a null value is not defined, */ nulcheck = 0; /* then do not check for null values. */ else if (tcode == TSHORT && (tnull > SHRT_MAX || tnull < SHRT_MIN) ) nulcheck = 0; /* Impossible null value */ else if (tcode == TBYTE && (tnull > 255 || tnull < 0) ) nulcheck = 0; /* Impossible null value */ else if (tcode == TSTRING && snull[0] == ASCII_NULL_UNDEFINED) nulcheck = 0; /*----------------------------------------------------------------------*/ /* If FITS column and output data array have same datatype, then we do */ /* not need to use a temporary buffer to store intermediate datatype. */ /*----------------------------------------------------------------------*/ convert = 1; if (tcode == TLONGLONG) /* Special Case: */ { /* no type convertion required, so read */ /* data directly into output buffer. */ if (nelem < (LONGLONG)INT32_MAX/8) { maxelem = nelem; } else { maxelem = INT32_MAX/8; } if (nulcheck == 0 && scale == 1. && zero == 0.) convert = 0; /* no need to scale data or find nulls */ } /*---------------------------------------------------------------------*/ /* Now read the pixels from the FITS column. If the column does not */ /* have the same datatype as the output array, then we have to read */ /* the raw values into a temporary buffer (of limited size). In */ /* the case of a vector colum read only 1 vector of values at a time */ /* then skip to the next row if more values need to be read. */ /* After reading the raw values, then call the fffXXYY routine to (1) */ /* test for undefined values, (2) convert the datatype if necessary, */ /* and (3) scale the values by the FITS TSCALn and TZEROn linear */ /* scaling parameters. */ /*---------------------------------------------------------------------*/ remain = nelem; /* remaining number of values to read */ next = 0; /* next element in array to be read */ rownum = 0; /* row number, relative to firstrow */ while (remain) { /* limit the number of pixels to read at one time to the number that will fit in the buffer or to the number of pixels that remain in the current vector, which ever is smaller. */ ntodo = (long) minvalue(remain, maxelem); if (elemincre >= 0) { ntodo = (long) minvalue(ntodo, ((repeat - elemnum - 1)/elemincre +1)); } else { ntodo = (long) minvalue(ntodo, (elemnum/(-elemincre) +1)); } readptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * (incre / elemincre)); switch (tcode) { case (TLONGLONG): ffgi8b(fptr, readptr, ntodo, incre, (long *) &array[next], status); if (convert) fffi8i8((LONGLONG *) &array[next], ntodo, scale, zero, nulcheck, tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TLONG): ffgi4b(fptr, readptr, ntodo, incre, (INT32BIT *) buffer, status); fffi4i8((INT32BIT *) buffer, ntodo, scale, zero, nulcheck, (INT32BIT) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TBYTE): ffgi1b(fptr, readptr, ntodo, incre, (unsigned char *) buffer, status); fffi1i8((unsigned char *) buffer, ntodo, scale, zero, nulcheck, (unsigned char) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TSHORT): ffgi2b(fptr, readptr, ntodo, incre, (short *) buffer, status); fffi2i8((short *) buffer, ntodo, scale, zero, nulcheck, (short) tnull, nulval, &nularray[next], anynul, &array[next], status); break; case (TFLOAT): ffgr4b(fptr, readptr, ntodo, incre, (float *) buffer, status); fffr4i8((float *) buffer, ntodo, scale, zero, nulcheck, nulval, &nularray[next], anynul, &array[next], status); break; case (TDOUBLE): ffgr8b(fptr, readptr, ntodo, incre, (double *) buffer, status); fffr8i8((double *) buffer, ntodo, scale, zero, nulcheck, nulval, &nularray[next], anynul, &array[next], status); break; case (TSTRING): ffmbyt(fptr, readptr, REPORT_EOF, status); if (incre == twidth) /* contiguous bytes */ ffgbyt(fptr, ntodo * twidth, buffer, status); else ffgbytoff(fptr, twidth, ntodo, incre - twidth, buffer, status); fffstri8((char *) buffer, ntodo, scale, zero, twidth, power, nulcheck, snull, nulval, &nularray[next], anynul, &array[next], status); break; default: /* error trap for invalid column format */ sprintf(message, "Cannot read numbers from column %d which has format %s", colnum, tform); ffpmsg(message); if (hdutype == ASCII_TBL) return(*status = BAD_ATABLE_FORMAT); else return(*status = BAD_BTABLE_FORMAT); } /* End of switch block */ /*-------------------------*/ /* Check for fatal error */ /*-------------------------*/ if (*status > 0) /* test for error during previous read operation */ { dtemp = (double) next; if (hdutype > 0) sprintf(message, "Error reading elements %.0f thru %.0f from column %d (ffgclj).", dtemp+1., dtemp+ntodo, colnum); else sprintf(message, "Error reading elements %.0f thru %.0f from image (ffgclj).", dtemp+1., dtemp+ntodo); ffpmsg(message); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain -= ntodo; if (remain) { next += ntodo; elemnum = elemnum + (ntodo * elemincre); if (elemnum >= repeat) /* completed a row; start on later row */ { rowincre = elemnum / repeat; rownum += rowincre; elemnum = elemnum - (rowincre * repeat); } else if (elemnum < 0) /* completed a row; start on a previous row */ { rowincre = (-elemnum - 1) / repeat + 1; rownum -= rowincre; elemnum = (rowincre * repeat) + elemnum; } } } /* End of main while Loop */ /*--------------------------------*/ /* check for numerical overflow */ /*--------------------------------*/ if (*status == OVERFLOW_ERR) { ffpmsg( "Numerical overflow during type conversion while reading FITS data."); *status = NUM_OVERFLOW; } return(*status); } /*--------------------------------------------------------------------------*/ int fffi1i8(unsigned char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ unsigned char tnull, /* I - value of FITS TNULLn keyword if any */ LONGLONG nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ LONGLONG *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) output[ii] = (LONGLONG) input[ii]; /* copy input to output */ } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (dvalue > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else output[ii] = (LONGLONG) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = (LONGLONG) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (dvalue > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else output[ii] = (LONGLONG) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi2i8(short *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ short tnull, /* I - value of FITS TNULLn keyword if any */ LONGLONG nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ LONGLONG *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) output[ii] = (LONGLONG) input[ii]; /* copy input to output */ } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (dvalue > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else output[ii] = (LONGLONG) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = (LONGLONG) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (dvalue > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else output[ii] = (LONGLONG) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi4i8(INT32BIT *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ INT32BIT tnull, /* I - value of FITS TNULLn keyword if any */ LONGLONG nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ LONGLONG *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) output[ii] = (LONGLONG) input[ii]; /* copy input to output */ } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (dvalue > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else output[ii] = (LONGLONG) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = (LONGLONG) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (dvalue > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else output[ii] = (LONGLONG) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffi8i8(LONGLONG *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ LONGLONG tnull, /* I - value of FITS TNULLn keyword if any */ LONGLONG nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ LONGLONG *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to tnull. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) output[ii] = input[ii]; /* copy input to output */ } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (dvalue > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else output[ii] = (LONGLONG) dvalue; } } } else /* must check for null values */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else output[ii] = input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] == tnull) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else { dvalue = input[ii] * scale + zero; if (dvalue < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (dvalue > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else output[ii] = (LONGLONG) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffr4i8(float *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ LONGLONG nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ LONGLONG *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to NaN. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; short *sptr, iret; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (input[ii] > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else output[ii] = (LONGLONG) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (dvalue > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else output[ii] = (LONGLONG) dvalue; } } } else /* must check for null values */ { sptr = (short *) input; #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS sptr++; /* point to MSBs */ #endif if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++, sptr += 2) { if (0 != (iret = fnan(*sptr) ) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ output[ii] = 0; } else { if (input[ii] < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (input[ii] > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else output[ii] = (LONGLONG) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++, sptr += 2) { if (0 != (iret = fnan(*sptr) ) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ { if (zero < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (zero > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else output[ii] = (LONGLONG) zero; } } else { dvalue = input[ii] * scale + zero; if (dvalue < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (dvalue > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else output[ii] = (LONGLONG) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffr8i8(double *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ LONGLONG nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ LONGLONG *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do datatype conversion and scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to NaN. If nullcheck = 0, then no checking for nulls is performed and any null values will be transformed just like any other pixel. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { long ii; double dvalue; short *sptr, iret; if (nullcheck == 0) /* no null checking required */ { if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++) { if (input[ii] < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (input[ii] > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else output[ii] = (LONGLONG) input[ii]; } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++) { dvalue = input[ii] * scale + zero; if (dvalue < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (dvalue > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else output[ii] = (LONGLONG) dvalue; } } } else /* must check for null values */ { sptr = (short *) input; #if BYTESWAPPED && MACHINE != VAXVMS && MACHINE != ALPHAVMS sptr += 3; /* point to MSBs */ #endif if (scale == 1. && zero == 0.) /* no scaling */ { for (ii = 0; ii < ntodo; ii++, sptr += 4) { if (0 != (iret = dnan(*sptr)) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ output[ii] = 0; } else { if (input[ii] < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (input[ii] > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else output[ii] = (LONGLONG) input[ii]; } } } else /* must scale the data */ { for (ii = 0; ii < ntodo; ii++, sptr += 4) { if (0 != (iret = dnan(*sptr)) ) /* test for NaN or underflow */ { if (iret == 1) /* is it a NaN? */ { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } else /* it's an underflow */ { if (zero < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (zero > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else output[ii] = (LONGLONG) zero; } } else { dvalue = input[ii] * scale + zero; if (dvalue < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (dvalue > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else output[ii] = (LONGLONG) dvalue; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fffstri8(char *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ long twidth, /* I - width of each substring of chars */ double implipower, /* I - power of 10 of implied decimal */ int nullcheck, /* I - null checking code; 0 = don't check */ /* 1:set null pixels = nullval */ /* 2: if null pixel, set nullarray = 1 */ char *snull, /* I - value of FITS null string, if any */ LONGLONG nullval, /* I - set null pixels, if nullcheck = 1 */ char *nullarray, /* I - bad pixel array, if nullcheck = 2 */ int *anynull, /* O - set to 1 if any pixels are null */ LONGLONG *output, /* O - array of converted pixels */ int *status) /* IO - error status */ /* Copy input to output following reading of the input from a FITS file. Check for null values and do scaling if required. The nullcheck code value determines how any null values in the input array are treated. A null value is an input pixel that is equal to snull. If nullcheck= 0, then no special checking for nulls is performed. If nullcheck = 1, then the output pixel will be set = nullval if the corresponding input pixel is null. If nullcheck = 2, then if the pixel is null then the corresponding value of nullarray will be set to 1; the value of nullarray for non-null pixels will = 0. The anynull parameter will be set = 1 if any of the returned pixels are null, otherwise anynull will be returned with a value = 0; */ { int nullen; long ii; double dvalue; char *cstring, message[81]; char *cptr, *tpos; char tempstore, chrzero = '0'; double val, power; int exponent, sign, esign, decpt; nullen = strlen(snull); cptr = input; /* pointer to start of input string */ for (ii = 0; ii < ntodo; ii++) { cstring = cptr; /* temporarily insert a null terminator at end of the string */ tpos = cptr + twidth; tempstore = *tpos; *tpos = 0; /* check if null value is defined, and if the */ /* column string is identical to the null string */ if (snull[0] != ASCII_NULL_UNDEFINED && !strncmp(snull, cptr, nullen) ) { if (nullcheck) { *anynull = 1; if (nullcheck == 1) output[ii] = nullval; else nullarray[ii] = 1; } cptr += twidth; } else { /* value is not the null value, so decode it */ /* remove any embedded blank characters from the string */ decpt = 0; sign = 1; val = 0.; power = 1.; exponent = 0; esign = 1; while (*cptr == ' ') /* skip leading blanks */ cptr++; if (*cptr == '-' || *cptr == '+') /* check for leading sign */ { if (*cptr == '-') sign = -1; cptr++; while (*cptr == ' ') /* skip blanks between sign and value */ cptr++; } while (*cptr >= '0' && *cptr <= '9') { val = val * 10. + *cptr - chrzero; /* accumulate the value */ cptr++; while (*cptr == ' ') /* skip embedded blanks in the value */ cptr++; } if (*cptr == '.' || *cptr == ',') /* check for decimal point */ { decpt = 1; /* set flag to show there was a decimal point */ cptr++; while (*cptr == ' ') /* skip any blanks */ cptr++; while (*cptr >= '0' && *cptr <= '9') { val = val * 10. + *cptr - chrzero; /* accumulate the value */ power = power * 10.; cptr++; while (*cptr == ' ') /* skip embedded blanks in the value */ cptr++; } } if (*cptr == 'E' || *cptr == 'D') /* check for exponent */ { cptr++; while (*cptr == ' ') /* skip blanks */ cptr++; if (*cptr == '-' || *cptr == '+') /* check for exponent sign */ { if (*cptr == '-') esign = -1; cptr++; while (*cptr == ' ') /* skip blanks between sign and exp */ cptr++; } while (*cptr >= '0' && *cptr <= '9') { exponent = exponent * 10 + *cptr - chrzero; /* accumulate exp */ cptr++; while (*cptr == ' ') /* skip embedded blanks */ cptr++; } } if (*cptr != 0) /* should end up at the null terminator */ { sprintf(message, "Cannot read number from ASCII table"); ffpmsg(message); sprintf(message, "Column field = %s.", cstring); ffpmsg(message); /* restore the char that was overwritten by the null */ *tpos = tempstore; return(*status = BAD_C2D); } if (!decpt) /* if no explicit decimal, use implied */ power = implipower; dvalue = (sign * val / power) * pow(10., (double) (esign * exponent)); dvalue = dvalue * scale + zero; /* apply the scaling */ if (dvalue < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (dvalue > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else output[ii] = (LONGLONG) dvalue; } /* restore the char that was overwritten by the null */ *tpos = tempstore; } return(*status); } healpy-1.8.1/cfitsio/fitsio.h0000654000175000017530000033540112272000775016531 0ustar zoncaplanck00000000000000/* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ /* Copyright (Unpublished--all rights reserved under the copyright laws of the United States), U.S. Government as represented by the Administrator of the National Aeronautics and Space Administration. No copyright is claimed in the United States under Title 17, U.S. Code. Permission to freely use, copy, modify, and distribute this software and its documentation without fee is hereby granted, provided that this copyright notice and disclaimer of warranty appears in all copies. DISCLAIMER: THE SOFTWARE IS PROVIDED 'AS IS' WITHOUT ANY WARRANTY OF ANY KIND, EITHER EXPRESSED, IMPLIED, OR STATUTORY, INCLUDING, BUT NOT LIMITED TO, ANY WARRANTY THAT THE SOFTWARE WILL CONFORM TO SPECIFICATIONS, ANY IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND FREEDOM FROM INFRINGEMENT, AND ANY WARRANTY THAT THE DOCUMENTATION WILL CONFORM TO THE SOFTWARE, OR ANY WARRANTY THAT THE SOFTWARE WILL BE ERROR FREE. IN NO EVENT SHALL NASA BE LIABLE FOR ANY DAMAGES, INCLUDING, BUT NOT LIMITED TO, DIRECT, INDIRECT, SPECIAL OR CONSEQUENTIAL DAMAGES, ARISING OUT OF, RESULTING FROM, OR IN ANY WAY CONNECTED WITH THIS SOFTWARE, WHETHER OR NOT BASED UPON WARRANTY, CONTRACT, TORT , OR OTHERWISE, WHETHER OR NOT INJURY WAS SUSTAINED BY PERSONS OR PROPERTY OR OTHERWISE, AND WHETHER OR NOT LOSS WAS SUSTAINED FROM, OR AROSE OUT OF THE RESULTS OF, OR USE OF, THE SOFTWARE OR SERVICES PROVIDED HEREUNDER." */ #ifndef _FITSIO_H #define _FITSIO_H #define CFITSIO_VERSION 3.36 #define CFITSIO_MINOR 36 #define CFITSIO_MAJOR 3 #define CFITSIO_SONAME 2 /* the SONAME is incremented in a new release if the binary shared */ /* library (on linux and Mac systems) is not backward compatible */ /* with the previous release of CFITSIO */ /* CFITS_API is defined below for use on Windows systems. */ /* It is used to identify the public functions which should be exported. */ /* This has no effect on non-windows platforms where "WIN32" is not defined */ #if defined (WIN32) #if defined(cfitsio_EXPORTS) #define CFITS_API __declspec(dllexport) #else #define CFITS_API /* __declspec(dllimport) */ #endif /* CFITS_API */ #else /* defined (WIN32) */ #define CFITS_API #endif #include /* the following was provided by Michael Greason (GSFC) to fix a */ /* C/Fortran compatibility problem on an SGI Altix system running */ /* SGI ProPack 4 [this is a Novell SuSE Enterprise 9 derivative] */ /* and using the Intel C++ and Fortran compilers (version 9.1) */ #if defined(__INTEL_COMPILER) && defined(__itanium__) # define mipsFortran 1 # define _MIPS_SZLONG 64 #endif #if defined(linux) || defined(__APPLE__) || defined(__sgi) # include /* apparently needed on debian linux systems */ #endif /* to define off_t */ #include /* apparently needed to define size_t with gcc 2.8.1 */ #include /* needed for LLONG_MAX and INT64_MAX definitions */ /* Define the datatype for variables which store file offset values. */ /* The newer 'off_t' datatype should be used for this purpose, but some */ /* older compilers do not recognize this type, in which case we use 'long' */ /* instead. Note that _OFF_T is defined (or not) in stdio.h depending */ /* on whether _LARGEFILE_SOURCE is defined in sys/feature_tests.h */ /* (at least on Solaris platforms using cc) */ /* Debian systems require: "(defined(linux) && defined(__off_t_defined))" */ /* the mingw-w64 compiler requires: "(defined(__MINGW32__) && defined(_OFF_T_DEFINED))" */ #if defined(_OFF_T) \ || (defined(linux) && defined(__off_t_defined)) \ || (defined(__MINGW32__) && defined(_OFF_T_DEFINED)) \ || defined(_MIPS_SZLONG) || defined(__APPLE__) || defined(_AIX) # define OFF_T off_t #elif defined(_MSC_VER) && (_MSC_VER>= 1400) # define OFF_T long long #else # define OFF_T long #endif /* this block determines if the the string function name is strtol or strtoll, and whether to use %ld or %lld in printf statements */ /* The following 2 cases for that Athon64 were removed on 4 Jan 2006; they appear to be incorrect now that LONGLONG is always typedef'ed to 'long long' || defined(__ia64__) \ || defined(__x86_64__) \ */ #if (defined(__alpha) && ( defined(__unix__) || defined(__NetBSD__) )) \ || defined(__sparcv9) || (defined(__sparc__) && defined(__arch64__)) \ || defined(__powerpc64__) || defined(__64BIT__) \ || (defined(_MIPS_SZLONG) && _MIPS_SZLONG == 64) \ || defined( _MSC_VER)|| defined(__BORLANDC__) # define USE_LL_SUFFIX 0 #else # define USE_LL_SUFFIX 1 #endif /* Determine what 8-byte integer data type is available. 'long long' is now supported by most compilers, but older MS Visual C++ compilers before V7.0 use '__int64' instead. */ #ifndef LONGLONG_TYPE /* this may have been previously defined */ #if defined(_MSC_VER) /* Microsoft Visual C++ */ #if (_MSC_VER < 1300) /* versions earlier than V7.0 do not have 'long long' */ typedef __int64 LONGLONG; #else /* newer versions do support 'long long' */ typedef long long LONGLONG; #endif #elif defined( __BORLANDC__) /* for the Borland 5.5 compiler, in particular */ typedef __int64 LONGLONG; #else typedef long long LONGLONG; #endif #define LONGLONG_TYPE #endif #ifndef LONGLONG_MAX #ifdef LLONG_MAX /* Linux and Solaris definition */ #define LONGLONG_MAX LLONG_MAX #define LONGLONG_MIN LLONG_MIN #elif defined(LONG_LONG_MAX) #define LONGLONG_MAX LONG_LONG_MAX #define LONGLONG_MIN LONG_LONG_MIN #elif defined(__LONG_LONG_MAX__) /* Mac OS X & CYGWIN defintion */ #define LONGLONG_MAX __LONG_LONG_MAX__ #define LONGLONG_MIN (-LONGLONG_MAX -1LL) #elif defined(INT64_MAX) /* windows definition */ #define LONGLONG_MAX INT64_MAX #define LONGLONG_MIN INT64_MIN #elif defined(_I64_MAX) /* windows definition */ #define LONGLONG_MAX _I64_MAX #define LONGLONG_MIN _I64_MIN #elif (defined(__alpha) && ( defined(__unix__) || defined(__NetBSD__) )) \ || defined(__sparcv9) \ || defined(__ia64__) \ || defined(__x86_64__) \ || defined(_SX) \ || defined(__powerpc64__) || defined(__64BIT__) \ || (defined(_MIPS_SZLONG) && _MIPS_SZLONG == 64) /* sizeof(long) = 64 */ #define LONGLONG_MAX 9223372036854775807L /* max 64-bit integer */ #define LONGLONG_MIN (-LONGLONG_MAX -1L) /* min 64-bit integer */ #else /* define a default value, even if it is never used */ #define LONGLONG_MAX 9223372036854775807LL /* max 64-bit integer */ #define LONGLONG_MIN (-LONGLONG_MAX -1LL) /* min 64-bit integer */ #endif #endif /* end of ndef LONGLONG_MAX section */ /* ================================================================= */ /* The following exclusion if __CINT__ is defined is needed for ROOT */ #ifndef __CINT__ #include "longnam.h" #endif #define NIOBUF 40 /* number of IO buffers to create (default = 40) */ /* !! Significantly increasing NIOBUF may degrade performance !! */ #define IOBUFLEN 2880 /* size in bytes of each IO buffer (DONT CHANGE!) */ /* global variables */ #define FLEN_FILENAME 1025 /* max length of a filename */ #define FLEN_KEYWORD 72 /* max length of a keyword (HIERARCH convention) */ #define FLEN_CARD 81 /* length of a FITS header card */ #define FLEN_VALUE 71 /* max length of a keyword value string */ #define FLEN_COMMENT 73 /* max length of a keyword comment string */ #define FLEN_ERRMSG 81 /* max length of a FITSIO error message */ #define FLEN_STATUS 31 /* max length of a FITSIO status text string */ #define TBIT 1 /* codes for FITS table data types */ #define TBYTE 11 #define TSBYTE 12 #define TLOGICAL 14 #define TSTRING 16 #define TUSHORT 20 #define TSHORT 21 #define TUINT 30 #define TINT 31 #define TULONG 40 #define TLONG 41 #define TINT32BIT 41 /* used when returning datatype of a column */ #define TFLOAT 42 #define TLONGLONG 81 #define TDOUBLE 82 #define TCOMPLEX 83 #define TDBLCOMPLEX 163 #define TYP_STRUC_KEY 10 #define TYP_CMPRS_KEY 20 #define TYP_SCAL_KEY 30 #define TYP_NULL_KEY 40 #define TYP_DIM_KEY 50 #define TYP_RANG_KEY 60 #define TYP_UNIT_KEY 70 #define TYP_DISP_KEY 80 #define TYP_HDUID_KEY 90 #define TYP_CKSUM_KEY 100 #define TYP_WCS_KEY 110 #define TYP_REFSYS_KEY 120 #define TYP_COMM_KEY 130 #define TYP_CONT_KEY 140 #define TYP_USER_KEY 150 #define INT32BIT int /* 32-bit integer datatype. Currently this */ /* datatype is an 'int' on all useful platforms */ /* however, it is possible that that are cases */ /* where 'int' is a 2-byte integer, in which case */ /* INT32BIT would need to be defined as 'long'. */ #define BYTE_IMG 8 /* BITPIX code values for FITS image types */ #define SHORT_IMG 16 #define LONG_IMG 32 #define LONGLONG_IMG 64 #define FLOAT_IMG -32 #define DOUBLE_IMG -64 /* The following 2 codes are not true FITS */ /* datatypes; these codes are only used internally */ /* within cfitsio to make it easier for users */ /* to deal with unsigned integers. */ #define SBYTE_IMG 10 #define USHORT_IMG 20 #define ULONG_IMG 40 #define IMAGE_HDU 0 /* Primary Array or IMAGE HDU */ #define ASCII_TBL 1 /* ASCII table HDU */ #define BINARY_TBL 2 /* Binary table HDU */ #define ANY_HDU -1 /* matches any HDU type */ #define READONLY 0 /* options when opening a file */ #define READWRITE 1 /* adopt a hopefully obscure number to use as a null value flag */ /* could be problems if the FITS files contain data with these values */ #define FLOATNULLVALUE -9.11912E-36F #define DOUBLENULLVALUE -9.1191291391491E-36 /* compression algorithm codes */ #define NO_DITHER -1 #define SUBTRACTIVE_DITHER_1 1 #define SUBTRACTIVE_DITHER_2 2 #define MAX_COMPRESS_DIM 6 #define RICE_1 11 #define GZIP_1 21 #define GZIP_2 22 #define PLIO_1 31 #define HCOMPRESS_1 41 #define BZIP2_1 51 /* not publicly supported; only for test purposes */ #define NOCOMPRESS -1 #ifndef TRUE #define TRUE 1 #endif #ifndef FALSE #define FALSE 0 #endif #define CASESEN 1 /* do case-sensitive string match */ #define CASEINSEN 0 /* do case-insensitive string match */ #define GT_ID_ALL_URI 0 /* hierarchical grouping parameters */ #define GT_ID_REF 1 #define GT_ID_POS 2 #define GT_ID_ALL 3 #define GT_ID_REF_URI 11 #define GT_ID_POS_URI 12 #define OPT_RM_GPT 0 #define OPT_RM_ENTRY 1 #define OPT_RM_MBR 2 #define OPT_RM_ALL 3 #define OPT_GCP_GPT 0 #define OPT_GCP_MBR 1 #define OPT_GCP_ALL 2 #define OPT_MCP_ADD 0 #define OPT_MCP_NADD 1 #define OPT_MCP_REPL 2 #define OPT_MCP_MOV 3 #define OPT_MRG_COPY 0 #define OPT_MRG_MOV 1 #define OPT_CMT_MBR 1 #define OPT_CMT_MBR_DEL 11 typedef struct /* structure used to store table column information */ { char ttype[70]; /* column name = FITS TTYPEn keyword; */ LONGLONG tbcol; /* offset in row to first byte of each column */ int tdatatype; /* datatype code of each column */ LONGLONG trepeat; /* repeat count of column; number of elements */ double tscale; /* FITS TSCALn linear scaling factor */ double tzero; /* FITS TZEROn linear scaling zero point */ LONGLONG tnull; /* FITS null value for int image or binary table cols */ char strnull[20]; /* FITS null value string for ASCII table columns */ char tform[10]; /* FITS tform keyword value */ long twidth; /* width of each ASCII table column */ }tcolumn; #define VALIDSTRUC 555 /* magic value used to identify if structure is valid */ typedef struct /* structure used to store basic FITS file information */ { int filehandle; /* handle returned by the file open function */ int driver; /* defines which set of I/O drivers should be used */ int open_count; /* number of opened 'fitsfiles' using this structure */ char *filename; /* file name */ int validcode; /* magic value used to verify that structure is valid */ int only_one; /* flag meaning only copy the specified extension */ LONGLONG filesize; /* current size of the physical disk file in bytes */ LONGLONG logfilesize; /* logical size of file, including unflushed buffers */ int lasthdu; /* is this the last HDU in the file? 0 = no, else yes */ LONGLONG bytepos; /* current logical I/O pointer position in file */ LONGLONG io_pos; /* current I/O pointer position in the physical file */ int curbuf; /* number of I/O buffer currently in use */ int curhdu; /* current HDU number; 0 = primary array */ int hdutype; /* 0 = primary array, 1 = ASCII table, 2 = binary table */ int writemode; /* 0 = readonly, 1 = readwrite */ int maxhdu; /* highest numbered HDU known to exist in the file */ int MAXHDU; /* dynamically allocated dimension of headstart array */ LONGLONG *headstart; /* byte offset in file to start of each HDU */ LONGLONG headend; /* byte offest in file to end of the current HDU header */ LONGLONG ENDpos; /* byte offest to where the END keyword was last written */ LONGLONG nextkey; /* byte offset in file to beginning of next keyword */ LONGLONG datastart; /* byte offset in file to start of the current data unit */ int imgdim; /* dimension of image; cached for fast access */ LONGLONG imgnaxis[99]; /* length of each axis; cached for fast access */ int tfield; /* number of fields in the table (primary array has 2 */ int startcol; /* used by ffgcnn to record starting column number */ LONGLONG origrows; /* original number of rows (value of NAXIS2 keyword) */ LONGLONG numrows; /* number of rows in the table (dynamically updated) */ LONGLONG rowlength; /* length of a table row or image size (bytes) */ tcolumn *tableptr; /* pointer to the table structure */ LONGLONG heapstart; /* heap start byte relative to start of data unit */ LONGLONG heapsize; /* size of the heap, in bytes */ /* the following elements are related to compressed images */ /* these record the 'requested' options to be used when the image is compressed */ int request_compress_type; /* requested image compression algorithm */ long request_tilesize[MAX_COMPRESS_DIM]; /* requested tiling size */ float request_quantize_level; /* requested quantize level */ int request_quantize_method ; /* requested quantizing method */ int request_dither_seed; /* starting offset into the array of random dithering */ int request_lossy_int_compress; /* lossy compress integer image as if float image? */ int request_huge_hdu; /* use '1Q' rather then '1P' variable length arrays */ float request_hcomp_scale; /* requested HCOMPRESS scale factor */ int request_hcomp_smooth; /* requested HCOMPRESS smooth parameter */ /* these record the actual options that were used when the image was compressed */ int compress_type; /* type of compression algorithm */ long tilesize[MAX_COMPRESS_DIM]; /* size of compression tiles */ float quantize_level; /* floating point quantization level */ int quantize_method; /* floating point pixel quantization algorithm */ int dither_seed; /* starting offset into the array of random dithering */ /* other compression parameters */ int compressimg; /* 1 if HDU contains a compressed image, else 0 */ char zcmptype[12]; /* compression type string */ int zbitpix; /* FITS data type of image (BITPIX) */ int zndim; /* dimension of image */ long znaxis[MAX_COMPRESS_DIM]; /* length of each axis */ long maxtilelen; /* max number of pixels in each image tile */ long maxelem; /* maximum byte length of tile compressed arrays */ int cn_compressed; /* column number for COMPRESSED_DATA column */ int cn_uncompressed; /* column number for UNCOMPRESSED_DATA column */ int cn_gzip_data; /* column number for GZIP2 lossless compressed data */ int cn_zscale; /* column number for ZSCALE column */ int cn_zzero; /* column number for ZZERO column */ int cn_zblank; /* column number for the ZBLANK column */ double zscale; /* scaling value, if same for all tiles */ double zzero; /* zero pt, if same for all tiles */ double cn_bscale; /* value of the BSCALE keyword in header */ double cn_bzero; /* value of the BZERO keyword (may be reset) */ double cn_actual_bzero; /* actual value of the BZERO keyword */ int zblank; /* value for null pixels, if not a column */ int rice_blocksize; /* first compression parameter: Rice pixels/block */ int rice_bytepix; /* 2nd compression parameter: Rice bytes/pixel */ float hcomp_scale; /* 1st hcompress compression parameter */ int hcomp_smooth; /* 2nd hcompress compression parameter */ int *tilerow; /* row number of the array of uncompressed tiledata */ long *tiledatasize; /* length of the array of tile data in bytes */ int *tiletype; /* datatype of the array of tile (TINT, TSHORT, etc) */ void **tiledata; /* array of uncompressed tile of data, for row *tilerow */ void **tilenullarray; /* array of optional array of null value flags */ int *tileanynull; /* anynulls in the array of tile? */ char *iobuffer; /* pointer to FITS file I/O buffers */ long bufrecnum[NIOBUF]; /* file record number of each of the buffers */ int dirty[NIOBUF]; /* has the corresponding buffer been modified? */ int ageindex[NIOBUF]; /* relative age of each buffer */ } FITSfile; typedef struct /* structure used to store basic HDU information */ { int HDUposition; /* HDU position in file; 0 = first HDU */ FITSfile *Fptr; /* pointer to FITS file structure */ }fitsfile; typedef struct /* structure for the iterator function column information */ { /* elements required as input to fits_iterate_data: */ fitsfile *fptr; /* pointer to the HDU containing the column */ int colnum; /* column number in the table (use name if < 1) */ char colname[70]; /* name (= TTYPEn value) of the column (optional) */ int datatype; /* output datatype (converted if necessary */ int iotype; /* = InputCol, InputOutputCol, or OutputCol */ /* output elements that may be useful for the work function: */ void *array; /* pointer to the array (and the null value) */ long repeat; /* binary table vector repeat value */ long tlmin; /* legal minimum data value */ long tlmax; /* legal maximum data value */ char tunit[70]; /* physical unit string */ char tdisp[70]; /* suggested display format */ } iteratorCol; #define InputCol 0 /* flag for input only iterator column */ #define InputOutputCol 1 /* flag for input and output iterator column */ #define OutputCol 2 /* flag for output only iterator column */ /*============================================================================= * * The following wtbarr typedef is used in the fits_read_wcstab() routine, * which is intended for use with the WCSLIB library written by Mark * Calabretta, http://www.atnf.csiro.au/~mcalabre/index.html * * In order to maintain WCSLIB and CFITSIO as independent libraries it * was not permissible for any CFITSIO library code to include WCSLIB * header files, or vice versa. However, the CFITSIO function * fits_read_wcstab() accepts an array of structs defined by wcs.h within * WCSLIB. The problem then was to define this struct within fitsio.h * without including wcs.h, especially noting that wcs.h will often (but * not always) be included together with fitsio.h in an applications * program that uses fits_read_wcstab(). * * Of the various possibilities, the solution adopted was for WCSLIB to * define "struct wtbarr" while fitsio.h defines "typedef wtbarr", a * untagged struct with identical members. This allows both wcs.h and * fitsio.h to define a wtbarr data type without conflict by virtue of * the fact that structure tags and typedef names share different * namespaces in C. Therefore, declarations within WCSLIB look like * * struct wtbarr *w; * * while within CFITSIO they are simply * * wtbarr *w; * * but as suggested by the commonality of the names, these are really the * same aggregate data type. However, in passing a (struct wtbarr *) to * fits_read_wcstab() a cast to (wtbarr *) is formally required. *===========================================================================*/ #ifndef WCSLIB_GETWCSTAB #define WCSLIB_GETWCSTAB typedef struct { int i; /* Image axis number. */ int m; /* Array axis number for index vectors. */ int kind; /* Array type, 'c' (coord) or 'i' (index). */ char extnam[72]; /* EXTNAME of binary table extension. */ int extver; /* EXTVER of binary table extension. */ int extlev; /* EXTLEV of binary table extension. */ char ttype[72]; /* TTYPEn of column containing the array. */ long row; /* Table row number. */ int ndim; /* Expected array dimensionality. */ int *dimlen; /* Where to write the array axis lengths. */ double **arrayp; /* Where to write the address of the array */ /* allocated to store the array. */ } wtbarr; int CFITS_API fits_read_wcstab(fitsfile *fptr, int nwtb, wtbarr *wtb, int *status); #endif /* WCSLIB_GETWCSTAB */ /* error status codes */ #define CREATE_DISK_FILE -106 /* create disk file, without extended filename syntax */ #define OPEN_DISK_FILE -105 /* open disk file, without extended filename syntax */ #define SKIP_TABLE -104 /* move to 1st image when opening file */ #define SKIP_IMAGE -103 /* move to 1st table when opening file */ #define SKIP_NULL_PRIMARY -102 /* skip null primary array when opening file */ #define USE_MEM_BUFF -101 /* use memory buffer when opening file */ #define OVERFLOW_ERR -11 /* overflow during datatype conversion */ #define PREPEND_PRIMARY -9 /* used in ffiimg to insert new primary array */ #define SAME_FILE 101 /* input and output files are the same */ #define TOO_MANY_FILES 103 /* tried to open too many FITS files */ #define FILE_NOT_OPENED 104 /* could not open the named file */ #define FILE_NOT_CREATED 105 /* could not create the named file */ #define WRITE_ERROR 106 /* error writing to FITS file */ #define END_OF_FILE 107 /* tried to move past end of file */ #define READ_ERROR 108 /* error reading from FITS file */ #define FILE_NOT_CLOSED 110 /* could not close the file */ #define ARRAY_TOO_BIG 111 /* array dimensions exceed internal limit */ #define READONLY_FILE 112 /* Cannot write to readonly file */ #define MEMORY_ALLOCATION 113 /* Could not allocate memory */ #define BAD_FILEPTR 114 /* invalid fitsfile pointer */ #define NULL_INPUT_PTR 115 /* NULL input pointer to routine */ #define SEEK_ERROR 116 /* error seeking position in file */ #define BAD_URL_PREFIX 121 /* invalid URL prefix on file name */ #define TOO_MANY_DRIVERS 122 /* tried to register too many IO drivers */ #define DRIVER_INIT_FAILED 123 /* driver initialization failed */ #define NO_MATCHING_DRIVER 124 /* matching driver is not registered */ #define URL_PARSE_ERROR 125 /* failed to parse input file URL */ #define RANGE_PARSE_ERROR 126 /* failed to parse input file URL */ #define SHARED_ERRBASE (150) #define SHARED_BADARG (SHARED_ERRBASE + 1) #define SHARED_NULPTR (SHARED_ERRBASE + 2) #define SHARED_TABFULL (SHARED_ERRBASE + 3) #define SHARED_NOTINIT (SHARED_ERRBASE + 4) #define SHARED_IPCERR (SHARED_ERRBASE + 5) #define SHARED_NOMEM (SHARED_ERRBASE + 6) #define SHARED_AGAIN (SHARED_ERRBASE + 7) #define SHARED_NOFILE (SHARED_ERRBASE + 8) #define SHARED_NORESIZE (SHARED_ERRBASE + 9) #define HEADER_NOT_EMPTY 201 /* header already contains keywords */ #define KEY_NO_EXIST 202 /* keyword not found in header */ #define KEY_OUT_BOUNDS 203 /* keyword record number is out of bounds */ #define VALUE_UNDEFINED 204 /* keyword value field is blank */ #define NO_QUOTE 205 /* string is missing the closing quote */ #define BAD_INDEX_KEY 206 /* illegal indexed keyword name */ #define BAD_KEYCHAR 207 /* illegal character in keyword name or card */ #define BAD_ORDER 208 /* required keywords out of order */ #define NOT_POS_INT 209 /* keyword value is not a positive integer */ #define NO_END 210 /* couldn't find END keyword */ #define BAD_BITPIX 211 /* illegal BITPIX keyword value*/ #define BAD_NAXIS 212 /* illegal NAXIS keyword value */ #define BAD_NAXES 213 /* illegal NAXISn keyword value */ #define BAD_PCOUNT 214 /* illegal PCOUNT keyword value */ #define BAD_GCOUNT 215 /* illegal GCOUNT keyword value */ #define BAD_TFIELDS 216 /* illegal TFIELDS keyword value */ #define NEG_WIDTH 217 /* negative table row size */ #define NEG_ROWS 218 /* negative number of rows in table */ #define COL_NOT_FOUND 219 /* column with this name not found in table */ #define BAD_SIMPLE 220 /* illegal value of SIMPLE keyword */ #define NO_SIMPLE 221 /* Primary array doesn't start with SIMPLE */ #define NO_BITPIX 222 /* Second keyword not BITPIX */ #define NO_NAXIS 223 /* Third keyword not NAXIS */ #define NO_NAXES 224 /* Couldn't find all the NAXISn keywords */ #define NO_XTENSION 225 /* HDU doesn't start with XTENSION keyword */ #define NOT_ATABLE 226 /* the CHDU is not an ASCII table extension */ #define NOT_BTABLE 227 /* the CHDU is not a binary table extension */ #define NO_PCOUNT 228 /* couldn't find PCOUNT keyword */ #define NO_GCOUNT 229 /* couldn't find GCOUNT keyword */ #define NO_TFIELDS 230 /* couldn't find TFIELDS keyword */ #define NO_TBCOL 231 /* couldn't find TBCOLn keyword */ #define NO_TFORM 232 /* couldn't find TFORMn keyword */ #define NOT_IMAGE 233 /* the CHDU is not an IMAGE extension */ #define BAD_TBCOL 234 /* TBCOLn keyword value < 0 or > rowlength */ #define NOT_TABLE 235 /* the CHDU is not a table */ #define COL_TOO_WIDE 236 /* column is too wide to fit in table */ #define COL_NOT_UNIQUE 237 /* more than 1 column name matches template */ #define BAD_ROW_WIDTH 241 /* sum of column widths not = NAXIS1 */ #define UNKNOWN_EXT 251 /* unrecognizable FITS extension type */ #define UNKNOWN_REC 252 /* unrecognizable FITS record */ #define END_JUNK 253 /* END keyword is not blank */ #define BAD_HEADER_FILL 254 /* Header fill area not blank */ #define BAD_DATA_FILL 255 /* Data fill area not blank or zero */ #define BAD_TFORM 261 /* illegal TFORM format code */ #define BAD_TFORM_DTYPE 262 /* unrecognizable TFORM datatype code */ #define BAD_TDIM 263 /* illegal TDIMn keyword value */ #define BAD_HEAP_PTR 264 /* invalid BINTABLE heap address */ #define BAD_HDU_NUM 301 /* HDU number < 1 or > MAXHDU */ #define BAD_COL_NUM 302 /* column number < 1 or > tfields */ #define NEG_FILE_POS 304 /* tried to move before beginning of file */ #define NEG_BYTES 306 /* tried to read or write negative bytes */ #define BAD_ROW_NUM 307 /* illegal starting row number in table */ #define BAD_ELEM_NUM 308 /* illegal starting element number in vector */ #define NOT_ASCII_COL 309 /* this is not an ASCII string column */ #define NOT_LOGICAL_COL 310 /* this is not a logical datatype column */ #define BAD_ATABLE_FORMAT 311 /* ASCII table column has wrong format */ #define BAD_BTABLE_FORMAT 312 /* Binary table column has wrong format */ #define NO_NULL 314 /* null value has not been defined */ #define NOT_VARI_LEN 317 /* this is not a variable length column */ #define BAD_DIMEN 320 /* illegal number of dimensions in array */ #define BAD_PIX_NUM 321 /* first pixel number greater than last pixel */ #define ZERO_SCALE 322 /* illegal BSCALE or TSCALn keyword = 0 */ #define NEG_AXIS 323 /* illegal axis length < 1 */ #define NOT_GROUP_TABLE 340 #define HDU_ALREADY_MEMBER 341 #define MEMBER_NOT_FOUND 342 #define GROUP_NOT_FOUND 343 #define BAD_GROUP_ID 344 #define TOO_MANY_HDUS_TRACKED 345 #define HDU_ALREADY_TRACKED 346 #define BAD_OPTION 347 #define IDENTICAL_POINTERS 348 #define BAD_GROUP_ATTACH 349 #define BAD_GROUP_DETACH 350 #define BAD_I2C 401 /* bad int to formatted string conversion */ #define BAD_F2C 402 /* bad float to formatted string conversion */ #define BAD_INTKEY 403 /* can't interprete keyword value as integer */ #define BAD_LOGICALKEY 404 /* can't interprete keyword value as logical */ #define BAD_FLOATKEY 405 /* can't interprete keyword value as float */ #define BAD_DOUBLEKEY 406 /* can't interprete keyword value as double */ #define BAD_C2I 407 /* bad formatted string to int conversion */ #define BAD_C2F 408 /* bad formatted string to float conversion */ #define BAD_C2D 409 /* bad formatted string to double conversion */ #define BAD_DATATYPE 410 /* bad keyword datatype code */ #define BAD_DECIM 411 /* bad number of decimal places specified */ #define NUM_OVERFLOW 412 /* overflow during datatype conversion */ # define DATA_COMPRESSION_ERR 413 /* error in imcompress routines */ # define DATA_DECOMPRESSION_ERR 414 /* error in imcompress routines */ # define NO_COMPRESSED_TILE 415 /* compressed tile doesn't exist */ #define BAD_DATE 420 /* error in date or time conversion */ #define PARSE_SYNTAX_ERR 431 /* syntax error in parser expression */ #define PARSE_BAD_TYPE 432 /* expression did not evaluate to desired type */ #define PARSE_LRG_VECTOR 433 /* vector result too large to return in array */ #define PARSE_NO_OUTPUT 434 /* data parser failed not sent an out column */ #define PARSE_BAD_COL 435 /* bad data encounter while parsing column */ #define PARSE_BAD_OUTPUT 436 /* Output file not of proper type */ #define ANGLE_TOO_BIG 501 /* celestial angle too large for projection */ #define BAD_WCS_VAL 502 /* bad celestial coordinate or pixel value */ #define WCS_ERROR 503 /* error in celestial coordinate calculation */ #define BAD_WCS_PROJ 504 /* unsupported type of celestial projection */ #define NO_WCS_KEY 505 /* celestial coordinate keywords not found */ #define APPROX_WCS_KEY 506 /* approximate WCS keywords were calculated */ #define NO_CLOSE_ERROR 999 /* special value used internally to switch off */ /* the error message from ffclos and ffchdu */ /*------- following error codes are used in the grparser.c file -----------*/ #define NGP_ERRBASE (360) /* base chosen so not to interfere with CFITSIO */ #define NGP_OK (0) #define NGP_NO_MEMORY (NGP_ERRBASE + 0) /* malloc failed */ #define NGP_READ_ERR (NGP_ERRBASE + 1) /* read error from file */ #define NGP_NUL_PTR (NGP_ERRBASE + 2) /* null pointer passed as argument */ #define NGP_EMPTY_CURLINE (NGP_ERRBASE + 3) /* line read seems to be empty */ #define NGP_UNREAD_QUEUE_FULL (NGP_ERRBASE + 4) /* cannot unread more then 1 line (or single line twice) */ #define NGP_INC_NESTING (NGP_ERRBASE + 5) /* too deep include file nesting (inf. loop ?) */ #define NGP_ERR_FOPEN (NGP_ERRBASE + 6) /* fopen() failed, cannot open file */ #define NGP_EOF (NGP_ERRBASE + 7) /* end of file encountered */ #define NGP_BAD_ARG (NGP_ERRBASE + 8) /* bad arguments passed */ #define NGP_TOKEN_NOT_EXPECT (NGP_ERRBASE + 9) /* token not expected here */ /* The following exclusion if __CINT__ is defined is needed for ROOT */ #ifndef __CINT__ /* the following 3 lines are needed to support C++ compilers */ #ifdef __cplusplus extern "C" { #endif #endif int CFITS2Unit( fitsfile *fptr ); CFITS_API fitsfile* CUnit2FITS(int unit); /*---------------- FITS file URL parsing routines -------------*/ int CFITS_API fits_get_token (char **ptr, char *delimiter, char *token, int *isanumber); int CFITS_API fits_get_token2(char **ptr, char *delimiter, char **token, int *isanumber, int *status); char CFITS_API *fits_split_names(char *list); int CFITS_API ffiurl( char *url, char *urltype, char *infile, char *outfile, char *extspec, char *rowfilter, char *binspec, char *colspec, int *status); int CFITS_API ffifile (char *url, char *urltype, char *infile, char *outfile, char *extspec, char *rowfilter, char *binspec, char *colspec, char *pixfilter, int *status); int CFITS_API ffifile2 (char *url, char *urltype, char *infile, char *outfile, char *extspec, char *rowfilter, char *binspec, char *colspec, char *pixfilter, char *compspec, int *status); int CFITS_API ffrtnm(char *url, char *rootname, int *status); int CFITS_API ffexist(const char *infile, int *exists, int *status); int CFITS_API ffexts(char *extspec, int *extnum, char *extname, int *extvers, int *hdutype, char *colname, char *rowexpress, int *status); int CFITS_API ffextn(char *url, int *extension_num, int *status); int CFITS_API ffurlt(fitsfile *fptr, char *urlType, int *status); int CFITS_API ffbins(char *binspec, int *imagetype, int *haxis, char colname[4][FLEN_VALUE], double *minin, double *maxin, double *binsizein, char minname[4][FLEN_VALUE], char maxname[4][FLEN_VALUE], char binname[4][FLEN_VALUE], double *weight, char *wtname, int *recip, int *status); int CFITS_API ffbinr(char **binspec, char *colname, double *minin, double *maxin, double *binsizein, char *minname, char *maxname, char *binname, int *status); int CFITS_API fits_copy_cell2image(fitsfile *fptr, fitsfile *newptr, char *colname, long rownum, int *status); int CFITS_API fits_copy_image2cell(fitsfile *fptr, fitsfile *newptr, char *colname, long rownum, int copykeyflag, int *status); int CFITS_API fits_copy_pixlist2image(fitsfile *infptr, fitsfile *outfptr, int firstkey, /* I - first HDU record number to start with */ int naxis, int *colnum, int *status); int CFITS_API ffimport_file( char *filename, char **contents, int *status ); int CFITS_API ffrwrg( char *rowlist, LONGLONG maxrows, int maxranges, int *numranges, long *minrow, long *maxrow, int *status); int CFITS_API ffrwrgll( char *rowlist, LONGLONG maxrows, int maxranges, int *numranges, LONGLONG *minrow, LONGLONG *maxrow, int *status); /*---------------- FITS file I/O routines -------------*/ int CFITS_API fits_init_cfitsio(void); int CFITS_API ffomem(fitsfile **fptr, const char *name, int mode, void **buffptr, size_t *buffsize, size_t deltasize, void *(*mem_realloc)(void *p, size_t newsize), int *status); int CFITS_API ffopen(fitsfile **fptr, const char *filename, int iomode, int *status); int CFITS_API ffopentest(int soname, fitsfile **fptr, const char *filename, int iomode, int *status); int CFITS_API ffdopn(fitsfile **fptr, const char *filename, int iomode, int *status); int CFITS_API fftopn(fitsfile **fptr, const char *filename, int iomode, int *status); int CFITS_API ffiopn(fitsfile **fptr, const char *filename, int iomode, int *status); int CFITS_API ffdkopn(fitsfile **fptr, const char *filename, int iomode, int *status); int CFITS_API ffreopen(fitsfile *openfptr, fitsfile **newfptr, int *status); int CFITS_API ffinit( fitsfile **fptr, const char *filename, int *status); int CFITS_API ffdkinit(fitsfile **fptr, const char *filename, int *status); int CFITS_API ffimem(fitsfile **fptr, void **buffptr, size_t *buffsize, size_t deltasize, void *(*mem_realloc)(void *p, size_t newsize), int *status); int CFITS_API fftplt(fitsfile **fptr, const char *filename, const char *tempname, int *status); int CFITS_API ffflus(fitsfile *fptr, int *status); int CFITS_API ffflsh(fitsfile *fptr, int clearbuf, int *status); int CFITS_API ffclos(fitsfile *fptr, int *status); int CFITS_API ffdelt(fitsfile *fptr, int *status); int CFITS_API ffflnm(fitsfile *fptr, char *filename, int *status); int CFITS_API ffflmd(fitsfile *fptr, int *filemode, int *status); int CFITS_API fits_delete_iraf_file(const char *filename, int *status); /*---------------- utility routines -------------*/ float CFITS_API ffvers(float *version); void CFITS_API ffupch(char *string); void CFITS_API ffgerr(int status, char *errtext); void CFITS_API ffpmsg(const char *err_message); void CFITS_API ffpmrk(void); int CFITS_API ffgmsg(char *err_message); void CFITS_API ffcmsg(void); void CFITS_API ffcmrk(void); void CFITS_API ffrprt(FILE *stream, int status); void CFITS_API ffcmps(char *templt, char *colname, int casesen, int *match, int *exact); int CFITS_API fftkey(const char *keyword, int *status); int CFITS_API fftrec(char *card, int *status); int CFITS_API ffnchk(fitsfile *fptr, int *status); int CFITS_API ffkeyn(const char *keyroot, int value, char *keyname, int *status); int CFITS_API ffnkey(int value, const char *keyroot, char *keyname, int *status); int CFITS_API ffgkcl(char *card); int CFITS_API ffdtyp(const char *cval, char *dtype, int *status); int CFITS_API ffinttyp(char *cval, int *datatype, int *negative, int *status); int CFITS_API ffpsvc(char *card, char *value, char *comm, int *status); int CFITS_API ffgknm(char *card, char *name, int *length, int *status); int CFITS_API ffgthd(char *tmplt, char *card, int *hdtype, int *status); int CFITS_API ffmkky(const char *keyname, char *keyval, const char *comm, char *card, int *status); int CFITS_API fits_translate_keyword(char *inrec, char *outrec, char *patterns[][2], int npat, int n_value, int n_offset, int n_range, int *pat_num, int *i, int *j, int *m, int *n, int *status); int CFITS_API fits_translate_keywords(fitsfile *infptr, fitsfile *outfptr, int firstkey, char *patterns[][2], int npat, int n_value, int n_offset, int n_range, int *status); int CFITS_API ffasfm(char *tform, int *datacode, long *width, int *decim, int *status); int CFITS_API ffbnfm(char *tform, int *datacode, long *repeat, long *width, int *status); int CFITS_API ffbnfmll(char *tform, int *datacode, LONGLONG *repeat, long *width, int *status); int CFITS_API ffgabc(int tfields, char **tform, int space, long *rowlen, long *tbcol, int *status); int CFITS_API fits_get_section_range(char **ptr,long *secmin,long *secmax,long *incre, int *status); /* ffmbyt should not normally be used in application programs, but it is defined here as a publicly available routine because there are a few rare cases where it is needed */ int CFITS_API ffmbyt(fitsfile *fptr, LONGLONG bytpos, int ignore_err, int *status); /*----------------- write single keywords --------------*/ int CFITS_API ffpky(fitsfile *fptr, int datatype, const char *keyname, void *value, const char *comm, int *status); int CFITS_API ffprec(fitsfile *fptr, const char *card, int *status); int CFITS_API ffpcom(fitsfile *fptr, const char *comm, int *status); int CFITS_API ffpunt(fitsfile *fptr, const char *keyname, const char *unit, int *status); int CFITS_API ffphis(fitsfile *fptr, const char *history, int *status); int CFITS_API ffpdat(fitsfile *fptr, int *status); int CFITS_API ffverifydate(int year, int month, int day, int *status); int CFITS_API ffgstm(char *timestr, int *timeref, int *status); int CFITS_API ffgsdt(int *day, int *month, int *year, int *status); int CFITS_API ffdt2s(int year, int month, int day, char *datestr, int *status); int CFITS_API fftm2s(int year, int month, int day, int hour, int minute, double second, int decimals, char *datestr, int *status); int CFITS_API ffs2dt(char *datestr, int *year, int *month, int *day, int *status); int CFITS_API ffs2tm(char *datestr, int *year, int *month, int *day, int *hour, int *minute, double *second, int *status); int CFITS_API ffpkyu(fitsfile *fptr, const char *keyname, const char *comm, int *status); int CFITS_API ffpkys(fitsfile *fptr, const char *keyname, const char *value, const char *comm,int *status); int CFITS_API ffpkls(fitsfile *fptr, const char *keyname, const char *value, const char *comm,int *status); int CFITS_API ffplsw(fitsfile *fptr, int *status); int CFITS_API ffpkyl(fitsfile *fptr, const char *keyname, int value, const char *comm, int *status); int CFITS_API ffpkyj(fitsfile *fptr, const char *keyname, LONGLONG value, const char *comm, int *status); int CFITS_API ffpkyf(fitsfile *fptr, const char *keyname, float value, int decim, const char *comm, int *status); int CFITS_API ffpkye(fitsfile *fptr, const char *keyname, float value, int decim, const char *comm, int *status); int CFITS_API ffpkyg(fitsfile *fptr, const char *keyname, double value, int decim, const char *comm, int *status); int CFITS_API ffpkyd(fitsfile *fptr, const char *keyname, double value, int decim, const char *comm, int *status); int CFITS_API ffpkyc(fitsfile *fptr, const char *keyname, float *value, int decim, const char *comm, int *status); int CFITS_API ffpkym(fitsfile *fptr, const char *keyname, double *value, int decim, const char *comm, int *status); int CFITS_API ffpkfc(fitsfile *fptr, const char *keyname, float *value, int decim, const char *comm, int *status); int CFITS_API ffpkfm(fitsfile *fptr, const char *keyname, double *value, int decim, const char *comm, int *status); int CFITS_API ffpkyt(fitsfile *fptr, const char *keyname, long intval, double frac, const char *comm, int *status); int CFITS_API ffptdm( fitsfile *fptr, int colnum, int naxis, long naxes[], int *status); int CFITS_API ffptdmll( fitsfile *fptr, int colnum, int naxis, LONGLONG naxes[], int *status); /*----------------- write array of keywords --------------*/ int CFITS_API ffpkns(fitsfile *fptr, const char *keyroot, int nstart, int nkey, char *value[], char *comm[], int *status); int CFITS_API ffpknl(fitsfile *fptr, const char *keyroot, int nstart, int nkey, int *value, char *comm[], int *status); int CFITS_API ffpknj(fitsfile *fptr, const char *keyroot, int nstart, int nkey, long *value, char *comm[], int *status); int CFITS_API ffpknjj(fitsfile *fptr, const char *keyroot, int nstart, int nkey, LONGLONG *value, char *comm[], int *status); int CFITS_API ffpknf(fitsfile *fptr, const char *keyroot, int nstart, int nkey, float *value, int decim, char *comm[], int *status); int CFITS_API ffpkne(fitsfile *fptr, const char *keyroot, int nstart, int nkey, float *value, int decim, char *comm[], int *status); int CFITS_API ffpkng(fitsfile *fptr, const char *keyroot, int nstart, int nkey, double *value, int decim, char *comm[], int *status); int CFITS_API ffpknd(fitsfile *fptr, const char *keyroot, int nstart, int nkey, double *value, int decim, char *comm[], int *status); int CFITS_API ffcpky(fitsfile *infptr,fitsfile *outfptr,int incol,int outcol, char *rootname, int *status); /*----------------- write required header keywords --------------*/ int CFITS_API ffphps( fitsfile *fptr, int bitpix, int naxis, long naxes[], int *status); int CFITS_API ffphpsll( fitsfile *fptr, int bitpix, int naxis, LONGLONG naxes[], int *status); int CFITS_API ffphpr( fitsfile *fptr, int simple, int bitpix, int naxis, long naxes[], LONGLONG pcount, LONGLONG gcount, int extend, int *status); int CFITS_API ffphprll( fitsfile *fptr, int simple, int bitpix, int naxis, LONGLONG naxes[], LONGLONG pcount, LONGLONG gcount, int extend, int *status); int CFITS_API ffphtb(fitsfile *fptr, LONGLONG naxis1, LONGLONG naxis2, int tfields, char **ttype, long *tbcol, char **tform, char **tunit, const char *extname, int *status); int CFITS_API ffphbn(fitsfile *fptr, LONGLONG naxis2, int tfields, char **ttype, char **tform, char **tunit, const char *extname, LONGLONG pcount, int *status); int CFITS_API ffphext( fitsfile *fptr, const char *xtension, int bitpix, int naxis, long naxes[], LONGLONG pcount, LONGLONG gcount, int *status); /*----------------- write template keywords --------------*/ int CFITS_API ffpktp(fitsfile *fptr, const char *filename, int *status); /*------------------ get header information --------------*/ int CFITS_API ffghsp(fitsfile *fptr, int *nexist, int *nmore, int *status); int CFITS_API ffghps(fitsfile *fptr, int *nexist, int *position, int *status); /*------------------ move position in header -------------*/ int CFITS_API ffmaky(fitsfile *fptr, int nrec, int *status); int CFITS_API ffmrky(fitsfile *fptr, int nrec, int *status); /*------------------ read single keywords -----------------*/ int CFITS_API ffgnxk(fitsfile *fptr, char **inclist, int ninc, char **exclist, int nexc, char *card, int *status); int CFITS_API ffgrec(fitsfile *fptr, int nrec, char *card, int *status); int CFITS_API ffgcrd(fitsfile *fptr, const char *keyname, char *card, int *status); int CFITS_API ffgstr(fitsfile *fptr, const char *string, char *card, int *status); int CFITS_API ffgunt(fitsfile *fptr, const char *keyname, char *unit, int *status); int CFITS_API ffgkyn(fitsfile *fptr, int nkey, char *keyname, char *keyval, char *comm, int *status); int CFITS_API ffgkey(fitsfile *fptr, const char *keyname, char *keyval, char *comm, int *status); int CFITS_API ffgky( fitsfile *fptr, int datatype, const char *keyname, void *value, char *comm, int *status); int CFITS_API ffgkys(fitsfile *fptr, const char *keyname, char *value, char *comm, int *status); int CFITS_API ffgkls(fitsfile *fptr, const char *keyname, char **value, char *comm, int *status); int CFITS_API fffree(void *value, int *status); int CFITS_API fffkls(char *value, int *status); int CFITS_API ffgkyl(fitsfile *fptr, const char *keyname, int *value, char *comm, int *status); int CFITS_API ffgkyj(fitsfile *fptr, const char *keyname, long *value, char *comm, int *status); int CFITS_API ffgkyjj(fitsfile *fptr, const char *keyname, LONGLONG *value, char *comm, int *status); int CFITS_API ffgkye(fitsfile *fptr, const char *keyname, float *value, char *comm,int *status); int CFITS_API ffgkyd(fitsfile *fptr, const char *keyname, double *value,char *comm,int *status); int CFITS_API ffgkyc(fitsfile *fptr, const char *keyname, float *value, char *comm,int *status); int CFITS_API ffgkym(fitsfile *fptr, const char *keyname, double *value,char *comm,int *status); int CFITS_API ffgkyt(fitsfile *fptr, const char *keyname, long *ivalue, double *dvalue, char *comm, int *status); int CFITS_API ffgtdm(fitsfile *fptr, int colnum, int maxdim, int *naxis, long naxes[], int *status); int CFITS_API ffgtdmll(fitsfile *fptr, int colnum, int maxdim, int *naxis, LONGLONG naxes[], int *status); int CFITS_API ffdtdm(fitsfile *fptr, char *tdimstr, int colnum, int maxdim, int *naxis, long naxes[], int *status); int CFITS_API ffdtdmll(fitsfile *fptr, char *tdimstr, int colnum, int maxdim, int *naxis, LONGLONG naxes[], int *status); /*------------------ read array of keywords -----------------*/ int CFITS_API ffgkns(fitsfile *fptr, const char *keyname, int nstart, int nmax, char *value[], int *nfound, int *status); int CFITS_API ffgknl(fitsfile *fptr, const char *keyname, int nstart, int nmax, int *value, int *nfound, int *status); int CFITS_API ffgknj(fitsfile *fptr, const char *keyname, int nstart, int nmax, long *value, int *nfound, int *status); int CFITS_API ffgknjj(fitsfile *fptr, const char *keyname, int nstart, int nmax, LONGLONG *value, int *nfound, int *status); int CFITS_API ffgkne(fitsfile *fptr, const char *keyname, int nstart, int nmax, float *value, int *nfound, int *status); int CFITS_API ffgknd(fitsfile *fptr, const char *keyname, int nstart, int nmax, double *value, int *nfound, int *status); int CFITS_API ffh2st(fitsfile *fptr, char **header, int *status); int CFITS_API ffhdr2str( fitsfile *fptr, int exclude_comm, char **exclist, int nexc, char **header, int *nkeys, int *status); int CFITS_API ffcnvthdr2str( fitsfile *fptr, int exclude_comm, char **exclist, int nexc, char **header, int *nkeys, int *status); /*----------------- read required header keywords --------------*/ int CFITS_API ffghpr(fitsfile *fptr, int maxdim, int *simple, int *bitpix, int *naxis, long naxes[], long *pcount, long *gcount, int *extend, int *status); int CFITS_API ffghprll(fitsfile *fptr, int maxdim, int *simple, int *bitpix, int *naxis, LONGLONG naxes[], long *pcount, long *gcount, int *extend, int *status); int CFITS_API ffghtb(fitsfile *fptr,int maxfield, long *naxis1, long *naxis2, int *tfields, char **ttype, long *tbcol, char **tform, char **tunit, char *extname, int *status); int CFITS_API ffghtbll(fitsfile *fptr,int maxfield, LONGLONG *naxis1, LONGLONG *naxis2, int *tfields, char **ttype, LONGLONG *tbcol, char **tform, char **tunit, char *extname, int *status); int CFITS_API ffghbn(fitsfile *fptr, int maxfield, long *naxis2, int *tfields, char **ttype, char **tform, char **tunit, char *extname, long *pcount, int *status); int CFITS_API ffghbnll(fitsfile *fptr, int maxfield, LONGLONG *naxis2, int *tfields, char **ttype, char **tform, char **tunit, char *extname, LONGLONG *pcount, int *status); /*--------------------- update keywords ---------------*/ int CFITS_API ffuky(fitsfile *fptr, int datatype, const char *keyname, void *value, const char *comm, int *status); int CFITS_API ffucrd(fitsfile *fptr, const char *keyname, const char *card, int *status); int CFITS_API ffukyu(fitsfile *fptr, const char *keyname, const char *comm, int *status); int CFITS_API ffukys(fitsfile *fptr, const char *keyname, const char *value, const char *comm, int *status); int CFITS_API ffukls(fitsfile *fptr, const char *keyname, const char *value, const char *comm, int *status); int CFITS_API ffukyl(fitsfile *fptr, const char *keyname, int value, const char *comm, int *status); int CFITS_API ffukyj(fitsfile *fptr, const char *keyname, LONGLONG value, const char *comm, int *status); int CFITS_API ffukyf(fitsfile *fptr, const char *keyname, float value, int decim, const char *comm, int *status); int CFITS_API ffukye(fitsfile *fptr, const char *keyname, float value, int decim, const char *comm, int *status); int CFITS_API ffukyg(fitsfile *fptr, const char *keyname, double value, int decim, const char *comm, int *status); int CFITS_API ffukyd(fitsfile *fptr, const char *keyname, double value, int decim, const char *comm, int *status); int CFITS_API ffukyc(fitsfile *fptr, const char *keyname, float *value, int decim, const char *comm, int *status); int CFITS_API ffukym(fitsfile *fptr, const char *keyname, double *value, int decim, const char *comm, int *status); int CFITS_API ffukfc(fitsfile *fptr, const char *keyname, float *value, int decim, const char *comm, int *status); int CFITS_API ffukfm(fitsfile *fptr, const char *keyname, double *value, int decim, const char *comm, int *status); /*--------------------- modify keywords ---------------*/ int CFITS_API ffmrec(fitsfile *fptr, int nkey, const char *card, int *status); int CFITS_API ffmcrd(fitsfile *fptr, const char *keyname, const char *card, int *status); int CFITS_API ffmnam(fitsfile *fptr, const char *oldname, const char *newname, int *status); int CFITS_API ffmcom(fitsfile *fptr, const char *keyname, const char *comm, int *status); int CFITS_API ffmkyu(fitsfile *fptr, const char *keyname, const char *comm, int *status); int CFITS_API ffmkys(fitsfile *fptr, const char *keyname, const char *value, const char *comm,int *status); int CFITS_API ffmkls(fitsfile *fptr, const char *keyname, const char *value, const char *comm,int *status); int CFITS_API ffmkyl(fitsfile *fptr, const char *keyname, int value, const char *comm, int *status); int CFITS_API ffmkyj(fitsfile *fptr, const char *keyname, LONGLONG value, const char *comm, int *status); int CFITS_API ffmkyf(fitsfile *fptr, const char *keyname, float value, int decim, const char *comm, int *status); int CFITS_API ffmkye(fitsfile *fptr, const char *keyname, float value, int decim, const char *comm, int *status); int CFITS_API ffmkyg(fitsfile *fptr, const char *keyname, double value, int decim, const char *comm, int *status); int CFITS_API ffmkyd(fitsfile *fptr, const char *keyname, double value, int decim, const char *comm, int *status); int CFITS_API ffmkyc(fitsfile *fptr, const char *keyname, float *value, int decim, const char *comm, int *status); int CFITS_API ffmkym(fitsfile *fptr, const char *keyname, double *value, int decim, const char *comm, int *status); int CFITS_API ffmkfc(fitsfile *fptr, const char *keyname, float *value, int decim, const char *comm, int *status); int CFITS_API ffmkfm(fitsfile *fptr, const char *keyname, double *value, int decim, const char *comm, int *status); /*--------------------- insert keywords ---------------*/ int CFITS_API ffirec(fitsfile *fptr, int nkey, const char *card, int *status); int CFITS_API ffikey(fitsfile *fptr, const char *card, int *status); int CFITS_API ffikyu(fitsfile *fptr, const char *keyname, const char *comm, int *status); int CFITS_API ffikys(fitsfile *fptr, const char *keyname, const char *value, const char *comm,int *status); int CFITS_API ffikls(fitsfile *fptr, const char *keyname, const char *value, const char *comm,int *status); int CFITS_API ffikyl(fitsfile *fptr, const char *keyname, int value, const char *comm, int *status); int CFITS_API ffikyj(fitsfile *fptr, const char *keyname, LONGLONG value, const char *comm, int *status); int CFITS_API ffikyf(fitsfile *fptr, const char *keyname, float value, int decim, const char *comm, int *status); int CFITS_API ffikye(fitsfile *fptr, const char *keyname, float value, int decim, const char *comm, int *status); int CFITS_API ffikyg(fitsfile *fptr, const char *keyname, double value, int decim, const char *comm, int *status); int CFITS_API ffikyd(fitsfile *fptr, const char *keyname, double value, int decim, const char *comm, int *status); int CFITS_API ffikyc(fitsfile *fptr, const char *keyname, float *value, int decim, const char *comm, int *status); int CFITS_API ffikym(fitsfile *fptr, const char *keyname, double *value, int decim, const char *comm, int *status); int CFITS_API ffikfc(fitsfile *fptr, const char *keyname, float *value, int decim, const char *comm, int *status); int CFITS_API ffikfm(fitsfile *fptr, const char *keyname, double *value, int decim, const char *comm, int *status); /*--------------------- delete keywords ---------------*/ int CFITS_API ffdkey(fitsfile *fptr, const char *keyname, int *status); int CFITS_API ffdstr(fitsfile *fptr, const char *string, int *status); int CFITS_API ffdrec(fitsfile *fptr, int keypos, int *status); /*--------------------- get HDU information -------------*/ int CFITS_API ffghdn(fitsfile *fptr, int *chdunum); int CFITS_API ffghdt(fitsfile *fptr, int *exttype, int *status); int CFITS_API ffghad(fitsfile *fptr, long *headstart, long *datastart, long *dataend, int *status); int CFITS_API ffghadll(fitsfile *fptr, LONGLONG *headstart, LONGLONG *datastart, LONGLONG *dataend, int *status); int CFITS_API ffghof(fitsfile *fptr, OFF_T *headstart, OFF_T *datastart, OFF_T *dataend, int *status); int CFITS_API ffgipr(fitsfile *fptr, int maxaxis, int *imgtype, int *naxis, long *naxes, int *status); int CFITS_API ffgiprll(fitsfile *fptr, int maxaxis, int *imgtype, int *naxis, LONGLONG *naxes, int *status); int CFITS_API ffgidt(fitsfile *fptr, int *imgtype, int *status); int CFITS_API ffgiet(fitsfile *fptr, int *imgtype, int *status); int CFITS_API ffgidm(fitsfile *fptr, int *naxis, int *status); int CFITS_API ffgisz(fitsfile *fptr, int nlen, long *naxes, int *status); int CFITS_API ffgiszll(fitsfile *fptr, int nlen, LONGLONG *naxes, int *status); /*--------------------- HDU operations -------------*/ int CFITS_API ffmahd(fitsfile *fptr, int hdunum, int *exttype, int *status); int CFITS_API ffmrhd(fitsfile *fptr, int hdumov, int *exttype, int *status); int CFITS_API ffmnhd(fitsfile *fptr, int exttype, char *hduname, int hduvers, int *status); int CFITS_API ffthdu(fitsfile *fptr, int *nhdu, int *status); int CFITS_API ffcrhd(fitsfile *fptr, int *status); int CFITS_API ffcrim(fitsfile *fptr, int bitpix, int naxis, long *naxes, int *status); int CFITS_API ffcrimll(fitsfile *fptr, int bitpix, int naxis, LONGLONG *naxes, int *status); int CFITS_API ffcrtb(fitsfile *fptr, int tbltype, LONGLONG naxis2, int tfields, char **ttype, char **tform, char **tunit, const char *extname, int *status); int CFITS_API ffiimg(fitsfile *fptr, int bitpix, int naxis, long *naxes, int *status); int CFITS_API ffiimgll(fitsfile *fptr, int bitpix, int naxis, LONGLONG *naxes, int *status); int CFITS_API ffitab(fitsfile *fptr, LONGLONG naxis1, LONGLONG naxis2, int tfields, char **ttype, long *tbcol, char **tform, char **tunit, const char *extname, int *status); int CFITS_API ffibin(fitsfile *fptr, LONGLONG naxis2, int tfields, char **ttype, char **tform, char **tunit, const char *extname, LONGLONG pcount, int *status); int CFITS_API ffrsim(fitsfile *fptr, int bitpix, int naxis, long *naxes, int *status); int CFITS_API ffrsimll(fitsfile *fptr, int bitpix, int naxis, LONGLONG *naxes, int *status); int CFITS_API ffdhdu(fitsfile *fptr, int *hdutype, int *status); int CFITS_API ffcopy(fitsfile *infptr, fitsfile *outfptr, int morekeys, int *status); int CFITS_API ffcpfl(fitsfile *infptr, fitsfile *outfptr, int prev, int cur, int follow, int *status); int CFITS_API ffcphd(fitsfile *infptr, fitsfile *outfptr, int *status); int CFITS_API ffcpdt(fitsfile *infptr, fitsfile *outfptr, int *status); int CFITS_API ffchfl(fitsfile *fptr, int *status); int CFITS_API ffcdfl(fitsfile *fptr, int *status); int CFITS_API ffwrhdu(fitsfile *fptr, FILE *outstream, int *status); int CFITS_API ffrdef(fitsfile *fptr, int *status); int CFITS_API ffhdef(fitsfile *fptr, int morekeys, int *status); int CFITS_API ffpthp(fitsfile *fptr, long theap, int *status); int CFITS_API ffcsum(fitsfile *fptr, long nrec, unsigned long *sum, int *status); void CFITS_API ffesum(unsigned long sum, int complm, char *ascii); unsigned long CFITS_API ffdsum(char *ascii, int complm, unsigned long *sum); int CFITS_API ffpcks(fitsfile *fptr, int *status); int CFITS_API ffupck(fitsfile *fptr, int *status); int CFITS_API ffvcks(fitsfile *fptr, int *datastatus, int *hdustatus, int *status); int CFITS_API ffgcks(fitsfile *fptr, unsigned long *datasum, unsigned long *hdusum, int *status); /*--------------------- define scaling or null values -------------*/ int CFITS_API ffpscl(fitsfile *fptr, double scale, double zero, int *status); int CFITS_API ffpnul(fitsfile *fptr, LONGLONG nulvalue, int *status); int CFITS_API fftscl(fitsfile *fptr, int colnum, double scale, double zero, int *status); int CFITS_API fftnul(fitsfile *fptr, int colnum, LONGLONG nulvalue, int *status); int CFITS_API ffsnul(fitsfile *fptr, int colnum, char *nulstring, int *status); /*--------------------- get column information -------------*/ int CFITS_API ffgcno(fitsfile *fptr, int casesen, char *templt, int *colnum, int *status); int CFITS_API ffgcnn(fitsfile *fptr, int casesen, char *templt, char *colname, int *colnum, int *status); int CFITS_API ffgtcl(fitsfile *fptr, int colnum, int *typecode, long *repeat, long *width, int *status); int CFITS_API ffgtclll(fitsfile *fptr, int colnum, int *typecode, LONGLONG *repeat, LONGLONG *width, int *status); int CFITS_API ffeqty(fitsfile *fptr, int colnum, int *typecode, long *repeat, long *width, int *status); int CFITS_API ffeqtyll(fitsfile *fptr, int colnum, int *typecode, LONGLONG *repeat, LONGLONG *width, int *status); int CFITS_API ffgncl(fitsfile *fptr, int *ncols, int *status); int CFITS_API ffgnrw(fitsfile *fptr, long *nrows, int *status); int CFITS_API ffgnrwll(fitsfile *fptr, LONGLONG *nrows, int *status); int CFITS_API ffgacl(fitsfile *fptr, int colnum, char *ttype, long *tbcol, char *tunit, char *tform, double *tscal, double *tzero, char *tnull, char *tdisp, int *status); int CFITS_API ffgbcl(fitsfile *fptr, int colnum, char *ttype, char *tunit, char *dtype, long *repeat, double *tscal, double *tzero, long *tnull, char *tdisp, int *status); int CFITS_API ffgbclll(fitsfile *fptr, int colnum, char *ttype, char *tunit, char *dtype, LONGLONG *repeat, double *tscal, double *tzero, LONGLONG *tnull, char *tdisp, int *status); int CFITS_API ffgrsz(fitsfile *fptr, long *nrows, int *status); int CFITS_API ffgcdw(fitsfile *fptr, int colnum, int *width, int *status); /*--------------------- read primary array or image elements -------------*/ int CFITS_API ffgpxv(fitsfile *fptr, int datatype, long *firstpix, LONGLONG nelem, void *nulval, void *array, int *anynul, int *status); int CFITS_API ffgpxvll(fitsfile *fptr, int datatype, LONGLONG *firstpix, LONGLONG nelem, void *nulval, void *array, int *anynul, int *status); int CFITS_API ffgpxf(fitsfile *fptr, int datatype, long *firstpix, LONGLONG nelem, void *array, char *nullarray, int *anynul, int *status); int CFITS_API ffgpxfll(fitsfile *fptr, int datatype, LONGLONG *firstpix, LONGLONG nelem, void *array, char *nullarray, int *anynul, int *status); int CFITS_API ffgsv(fitsfile *fptr, int datatype, long *blc, long *trc, long *inc, void *nulval, void *array, int *anynul, int *status); int CFITS_API ffgpv(fitsfile *fptr, int datatype, LONGLONG firstelem, LONGLONG nelem, void *nulval, void *array, int *anynul, int *status); int CFITS_API ffgpf(fitsfile *fptr, int datatype, LONGLONG firstelem, LONGLONG nelem, void *array, char *nullarray, int *anynul, int *status); int CFITS_API ffgpvb(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, unsigned char nulval, unsigned char *array, int *anynul, int *status); int CFITS_API ffgpvsb(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, signed char nulval, signed char *array, int *anynul, int *status); int CFITS_API ffgpvui(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, unsigned short nulval, unsigned short *array, int *anynul, int *status); int CFITS_API ffgpvi(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, short nulval, short *array, int *anynul, int *status); int CFITS_API ffgpvuj(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, unsigned long nulval, unsigned long *array, int *anynul, int *status); int CFITS_API ffgpvj(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, long nulval, long *array, int *anynul, int *status); int CFITS_API ffgpvjj(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, LONGLONG nulval, LONGLONG *array, int *anynul, int *status); int CFITS_API ffgpvuk(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, unsigned int nulval, unsigned int *array, int *anynul, int *status); int CFITS_API ffgpvk(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, int nulval, int *array, int *anynul, int *status); int CFITS_API ffgpve(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, float nulval, float *array, int *anynul, int *status); int CFITS_API ffgpvd(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, double nulval, double *array, int *anynul, int *status); int CFITS_API ffgpfb(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, unsigned char *array, char *nularray, int *anynul, int *status); int CFITS_API ffgpfsb(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, signed char *array, char *nularray, int *anynul, int *status); int CFITS_API ffgpfui(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, unsigned short *array, char *nularray, int *anynul, int *status); int CFITS_API ffgpfi(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, short *array, char *nularray, int *anynul, int *status); int CFITS_API ffgpfuj(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, unsigned long *array, char *nularray, int *anynul, int *status); int CFITS_API ffgpfj(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, long *array, char *nularray, int *anynul, int *status); int CFITS_API ffgpfjj(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, LONGLONG *array, char *nularray, int *anynul, int *status); int CFITS_API ffgpfuk(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, unsigned int *array, char *nularray, int *anynul, int *status); int CFITS_API ffgpfk(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, int *array, char *nularray, int *anynul, int *status); int CFITS_API ffgpfe(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, float *array, char *nularray, int *anynul, int *status); int CFITS_API ffgpfd(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, double *array, char *nularray, int *anynul, int *status); int CFITS_API ffg2db(fitsfile *fptr, long group, unsigned char nulval, LONGLONG ncols, LONGLONG naxis1, LONGLONG naxis2, unsigned char *array, int *anynul, int *status); int CFITS_API ffg2dsb(fitsfile *fptr, long group, signed char nulval, LONGLONG ncols, LONGLONG naxis1, LONGLONG naxis2, signed char *array, int *anynul, int *status); int CFITS_API ffg2dui(fitsfile *fptr, long group, unsigned short nulval, LONGLONG ncols, LONGLONG naxis1, LONGLONG naxis2, unsigned short *array, int *anynul, int *status); int CFITS_API ffg2di(fitsfile *fptr, long group, short nulval, LONGLONG ncols, LONGLONG naxis1, LONGLONG naxis2, short *array, int *anynul, int *status); int CFITS_API ffg2duj(fitsfile *fptr, long group, unsigned long nulval, LONGLONG ncols, LONGLONG naxis1, LONGLONG naxis2, unsigned long *array, int *anynul, int *status); int CFITS_API ffg2dj(fitsfile *fptr, long group, long nulval, LONGLONG ncols, LONGLONG naxis1, LONGLONG naxis2, long *array, int *anynul, int *status); int CFITS_API ffg2djj(fitsfile *fptr, long group, LONGLONG nulval, LONGLONG ncols, LONGLONG naxis1, LONGLONG naxis2, LONGLONG *array, int *anynul, int *status); int CFITS_API ffg2duk(fitsfile *fptr, long group, unsigned int nulval, LONGLONG ncols, LONGLONG naxis1, LONGLONG naxis2, unsigned int *array, int *anynul, int *status); int CFITS_API ffg2dk(fitsfile *fptr, long group, int nulval, LONGLONG ncols, LONGLONG naxis1, LONGLONG naxis2, int *array, int *anynul, int *status); int CFITS_API ffg2de(fitsfile *fptr, long group, float nulval, LONGLONG ncols, LONGLONG naxis1, LONGLONG naxis2, float *array, int *anynul, int *status); int CFITS_API ffg2dd(fitsfile *fptr, long group, double nulval, LONGLONG ncols, LONGLONG naxis1, LONGLONG naxis2, double *array, int *anynul, int *status); int CFITS_API ffg3db(fitsfile *fptr, long group, unsigned char nulval, LONGLONG ncols, LONGLONG nrows, LONGLONG naxis1, LONGLONG naxis2, LONGLONG naxis3, unsigned char *array, int *anynul, int *status); int CFITS_API ffg3dsb(fitsfile *fptr, long group, signed char nulval, LONGLONG ncols, LONGLONG nrows, LONGLONG naxis1, LONGLONG naxis2, LONGLONG naxis3, signed char *array, int *anynul, int *status); int CFITS_API ffg3dui(fitsfile *fptr, long group, unsigned short nulval, LONGLONG ncols, LONGLONG nrows, LONGLONG naxis1, LONGLONG naxis2, LONGLONG naxis3, unsigned short *array, int *anynul, int *status); int CFITS_API ffg3di(fitsfile *fptr, long group, short nulval, LONGLONG ncols, LONGLONG nrows, LONGLONG naxis1, LONGLONG naxis2, LONGLONG naxis3, short *array, int *anynul, int *status); int CFITS_API ffg3duj(fitsfile *fptr, long group, unsigned long nulval, LONGLONG ncols, LONGLONG nrows, LONGLONG naxis1, LONGLONG naxis2, LONGLONG naxis3, unsigned long *array, int *anynul, int *status); int CFITS_API ffg3dj(fitsfile *fptr, long group, long nulval, LONGLONG ncols, LONGLONG nrows, LONGLONG naxis1, LONGLONG naxis2, LONGLONG naxis3, long *array, int *anynul, int *status); int CFITS_API ffg3djj(fitsfile *fptr, long group, LONGLONG nulval, LONGLONG ncols, LONGLONG nrows, LONGLONG naxis1, LONGLONG naxis2, LONGLONG naxis3, LONGLONG *array, int *anynul, int *status); int CFITS_API ffg3duk(fitsfile *fptr, long group, unsigned int nulval, LONGLONG ncols, LONGLONG nrows, LONGLONG naxis1, LONGLONG naxis2, LONGLONG naxis3, unsigned int *array, int *anynul, int *status); int CFITS_API ffg3dk(fitsfile *fptr, long group, int nulval, LONGLONG ncols, LONGLONG nrows, LONGLONG naxis1, LONGLONG naxis2, LONGLONG naxis3, int *array, int *anynul, int *status); int CFITS_API ffg3de(fitsfile *fptr, long group, float nulval, LONGLONG ncols, LONGLONG nrows, LONGLONG naxis1, LONGLONG naxis2, LONGLONG naxis3, float *array, int *anynul, int *status); int CFITS_API ffg3dd(fitsfile *fptr, long group, double nulval, LONGLONG ncols, LONGLONG nrows, LONGLONG naxis1, LONGLONG naxis2, LONGLONG naxis3, double *array, int *anynul, int *status); int CFITS_API ffgsvb(fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, unsigned char nulval, unsigned char *array, int *anynul, int *status); int CFITS_API ffgsvsb(fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, signed char nulval, signed char *array, int *anynul, int *status); int CFITS_API ffgsvui(fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, unsigned short nulval, unsigned short *array, int *anynul, int *status); int CFITS_API ffgsvi(fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, short nulval, short *array, int *anynul, int *status); int CFITS_API ffgsvuj(fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, unsigned long nulval, unsigned long *array, int *anynul, int *status); int CFITS_API ffgsvj(fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, long nulval, long *array, int *anynul, int *status); int CFITS_API ffgsvjj(fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, LONGLONG nulval, LONGLONG *array, int *anynul, int *status); int CFITS_API ffgsvuk(fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, unsigned int nulval, unsigned int *array, int *anynul, int *status); int CFITS_API ffgsvk(fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, int nulval, int *array, int *anynul, int *status); int CFITS_API ffgsve(fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, float nulval, float *array, int *anynul, int *status); int CFITS_API ffgsvd(fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, double nulval, double *array, int *anynul, int *status); int CFITS_API ffgsfb(fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, unsigned char *array, char *flagval, int *anynul, int *status); int CFITS_API ffgsfsb(fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, signed char *array, char *flagval, int *anynul, int *status); int CFITS_API ffgsfui(fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, unsigned short *array, char *flagval, int *anynul, int *status); int CFITS_API ffgsfi(fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, short *array, char *flagval, int *anynul, int *status); int CFITS_API ffgsfuj(fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, unsigned long *array, char *flagval, int *anynul, int *status); int CFITS_API ffgsfj(fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, long *array, char *flagval, int *anynul, int *status); int CFITS_API ffgsfjj(fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, LONGLONG *array, char *flagval, int *anynul, int *status); int CFITS_API ffgsfuk(fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, unsigned int *array, char *flagval, int *anynul, int *status); int CFITS_API ffgsfk(fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, int *array, char *flagval, int *anynul, int *status); int CFITS_API ffgsfe(fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, float *array, char *flagval, int *anynul, int *status); int CFITS_API ffgsfd(fitsfile *fptr, int colnum, int naxis, long *naxes, long *blc, long *trc, long *inc, double *array, char *flagval, int *anynul, int *status); int CFITS_API ffggpb(fitsfile *fptr, long group, long firstelem, long nelem, unsigned char *array, int *status); int CFITS_API ffggpsb(fitsfile *fptr, long group, long firstelem, long nelem, signed char *array, int *status); int CFITS_API ffggpui(fitsfile *fptr, long group, long firstelem, long nelem, unsigned short *array, int *status); int CFITS_API ffggpi(fitsfile *fptr, long group, long firstelem, long nelem, short *array, int *status); int CFITS_API ffggpuj(fitsfile *fptr, long group, long firstelem, long nelem, unsigned long *array, int *status); int CFITS_API ffggpj(fitsfile *fptr, long group, long firstelem, long nelem, long *array, int *status); int CFITS_API ffggpjj(fitsfile *fptr, long group, long firstelem, long nelem, LONGLONG *array, int *status); int CFITS_API ffggpuk(fitsfile *fptr, long group, long firstelem, long nelem, unsigned int *array, int *status); int CFITS_API ffggpk(fitsfile *fptr, long group, long firstelem, long nelem, int *array, int *status); int CFITS_API ffggpe(fitsfile *fptr, long group, long firstelem, long nelem, float *array, int *status); int CFITS_API ffggpd(fitsfile *fptr, long group, long firstelem, long nelem, double *array, int *status); /*--------------------- read column elements -------------*/ int CFITS_API ffgcv( fitsfile *fptr, int datatype, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, void *nulval, void *array, int *anynul, int *status); int CFITS_API ffgcf( fitsfile *fptr, int datatype, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, void *array, char *nullarray, int *anynul, int *status); int CFITS_API ffgcvs(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, char *nulval, char **array, int *anynul, int *status); int CFITS_API ffgcl (fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, char *array, int *status); int CFITS_API ffgcvl (fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, char nulval, char *array, int *anynul, int *status); int CFITS_API ffgcvb(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, unsigned char nulval, unsigned char *array, int *anynul, int *status); int CFITS_API ffgcvsb(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, signed char nulval, signed char *array, int *anynul, int *status); int CFITS_API ffgcvui(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, unsigned short nulval, unsigned short *array, int *anynul, int *status); int CFITS_API ffgcvi(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, short nulval, short *array, int *anynul, int *status); int CFITS_API ffgcvuj(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, unsigned long nulval, unsigned long *array, int *anynul, int *status); int CFITS_API ffgcvj(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, long nulval, long *array, int *anynul, int *status); int CFITS_API ffgcvjj(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, LONGLONG nulval, LONGLONG *array, int *anynul, int *status); int CFITS_API ffgcvuk(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, unsigned int nulval, unsigned int *array, int *anynul, int *status); int CFITS_API ffgcvk(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, int nulval, int *array, int *anynul, int *status); int CFITS_API ffgcve(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, float nulval, float *array, int *anynul, int *status); int CFITS_API ffgcvd(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, double nulval, double *array, int *anynul, int *status); int CFITS_API ffgcvc(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, float nulval, float *array, int *anynul, int *status); int CFITS_API ffgcvm(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, double nulval, double *array, int *anynul, int *status); int CFITS_API ffgcx(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstbit, LONGLONG nbits, char *larray, int *status); int CFITS_API ffgcxui(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG nrows, long firstbit, int nbits, unsigned short *array, int *status); int CFITS_API ffgcxuk(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG nrows, long firstbit, int nbits, unsigned int *array, int *status); int CFITS_API ffgcfs(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, char **array, char *nularray, int *anynul, int *status); int CFITS_API ffgcfl(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, char *array, char *nularray, int *anynul, int *status); int CFITS_API ffgcfb(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, unsigned char *array, char *nularray, int *anynul, int *status); int CFITS_API ffgcfsb(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, signed char *array, char *nularray, int *anynul, int *status); int CFITS_API ffgcfui(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, unsigned short *array, char *nularray, int *anynul, int *status); int CFITS_API ffgcfi(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, short *array, char *nularray, int *anynul, int *status); int CFITS_API ffgcfuj(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, unsigned long *array, char *nularray, int *anynul, int *status); int CFITS_API ffgcfj(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, long *array, char *nularray, int *anynul, int *status); int CFITS_API ffgcfjj(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, LONGLONG *array, char *nularray, int *anynul, int *status); int CFITS_API ffgcfuk(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, unsigned int *array, char *nularray, int *anynul, int *status); int CFITS_API ffgcfk(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, int *array, char *nularray, int *anynul, int *status); int CFITS_API ffgcfe(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, float *array, char *nularray, int *anynul, int *status); int CFITS_API ffgcfd(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, double *array, char *nularray, int *anynul, int *status); int CFITS_API ffgcfc(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, float *array, char *nularray, int *anynul, int *status); int CFITS_API ffgcfm(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, double *array, char *nularray, int *anynul, int *status); int CFITS_API ffgdes(fitsfile *fptr, int colnum, LONGLONG rownum, long *length, long *heapaddr, int *status); int CFITS_API ffgdesll(fitsfile *fptr, int colnum, LONGLONG rownum, LONGLONG *length, LONGLONG *heapaddr, int *status); int CFITS_API ffgdess(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG nrows, long *length, long *heapaddr, int *status); int CFITS_API ffgdessll(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG nrows, LONGLONG *length, LONGLONG *heapaddr, int *status); int CFITS_API ffpdes(fitsfile *fptr, int colnum, LONGLONG rownum, LONGLONG length, LONGLONG heapaddr, int *status); int CFITS_API fftheap(fitsfile *fptr, LONGLONG *heapsize, LONGLONG *unused, LONGLONG *overlap, int *valid, int *status); int CFITS_API ffcmph(fitsfile *fptr, int *status); int CFITS_API ffgtbb(fitsfile *fptr, LONGLONG firstrow, LONGLONG firstchar, LONGLONG nchars, unsigned char *values, int *status); int CFITS_API ffgextn(fitsfile *fptr, LONGLONG offset, LONGLONG nelem, void *array, int *status); int CFITS_API ffpextn(fitsfile *fptr, LONGLONG offset, LONGLONG nelem, void *array, int *status); /*------------ write primary array or image elements -------------*/ int CFITS_API ffppx(fitsfile *fptr, int datatype, long *firstpix, LONGLONG nelem, void *array, int *status); int CFITS_API ffppxll(fitsfile *fptr, int datatype, LONGLONG *firstpix, LONGLONG nelem, void *array, int *status); int CFITS_API ffppxn(fitsfile *fptr, int datatype, long *firstpix, LONGLONG nelem, void *array, void *nulval, int *status); int CFITS_API ffppxnll(fitsfile *fptr, int datatype, LONGLONG *firstpix, LONGLONG nelem, void *array, void *nulval, int *status); int CFITS_API ffppr(fitsfile *fptr, int datatype, LONGLONG firstelem, LONGLONG nelem, void *array, int *status); int CFITS_API ffpprb(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, unsigned char *array, int *status); int CFITS_API ffpprsb(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, signed char *array, int *status); int CFITS_API ffpprui(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, unsigned short *array, int *status); int CFITS_API ffppri(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, short *array, int *status); int CFITS_API ffppruj(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, unsigned long *array, int *status); int CFITS_API ffpprj(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, long *array, int *status); int CFITS_API ffppruk(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, unsigned int *array, int *status); int CFITS_API ffpprk(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, int *array, int *status); int CFITS_API ffppre(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, float *array, int *status); int CFITS_API ffpprd(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, double *array, int *status); int CFITS_API ffpprjj(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, LONGLONG *array, int *status); int CFITS_API ffppru(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, int *status); int CFITS_API ffpprn(fitsfile *fptr, LONGLONG firstelem, LONGLONG nelem, int *status); int CFITS_API ffppn(fitsfile *fptr, int datatype, LONGLONG firstelem, LONGLONG nelem, void *array, void *nulval, int *status); int CFITS_API ffppnb(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, unsigned char *array, unsigned char nulval, int *status); int CFITS_API ffppnsb(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, signed char *array, signed char nulval, int *status); int CFITS_API ffppnui(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, unsigned short *array, unsigned short nulval, int *status); int CFITS_API ffppni(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, short *array, short nulval, int *status); int CFITS_API ffppnj(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, long *array, long nulval, int *status); int CFITS_API ffppnuj(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, unsigned long *array, unsigned long nulval, int *status); int CFITS_API ffppnuk(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, unsigned int *array, unsigned int nulval, int *status); int CFITS_API ffppnk(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, int *array, int nulval, int *status); int CFITS_API ffppne(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, float *array, float nulval, int *status); int CFITS_API ffppnd(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, double *array, double nulval, int *status); int CFITS_API ffppnjj(fitsfile *fptr, long group, LONGLONG firstelem, LONGLONG nelem, LONGLONG *array, LONGLONG nulval, int *status); int CFITS_API ffp2db(fitsfile *fptr, long group, LONGLONG ncols, LONGLONG naxis1, LONGLONG naxis2, unsigned char *array, int *status); int CFITS_API ffp2dsb(fitsfile *fptr, long group, LONGLONG ncols, LONGLONG naxis1, LONGLONG naxis2, signed char *array, int *status); int CFITS_API ffp2dui(fitsfile *fptr, long group, LONGLONG ncols, LONGLONG naxis1, LONGLONG naxis2, unsigned short *array, int *status); int CFITS_API ffp2di(fitsfile *fptr, long group, LONGLONG ncols, LONGLONG naxis1, LONGLONG naxis2, short *array, int *status); int CFITS_API ffp2duj(fitsfile *fptr, long group, LONGLONG ncols, LONGLONG naxis1, LONGLONG naxis2, unsigned long *array, int *status); int CFITS_API ffp2dj(fitsfile *fptr, long group, LONGLONG ncols, LONGLONG naxis1, LONGLONG naxis2, long *array, int *status); int CFITS_API ffp2duk(fitsfile *fptr, long group, LONGLONG ncols, LONGLONG naxis1, LONGLONG naxis2, unsigned int *array, int *status); int CFITS_API ffp2dk(fitsfile *fptr, long group, LONGLONG ncols, LONGLONG naxis1, LONGLONG naxis2, int *array, int *status); int CFITS_API ffp2de(fitsfile *fptr, long group, LONGLONG ncols, LONGLONG naxis1, LONGLONG naxis2, float *array, int *status); int CFITS_API ffp2dd(fitsfile *fptr, long group, LONGLONG ncols, LONGLONG naxis1, LONGLONG naxis2, double *array, int *status); int CFITS_API ffp2djj(fitsfile *fptr, long group, LONGLONG ncols, LONGLONG naxis1, LONGLONG naxis2, LONGLONG *array, int *status); int CFITS_API ffp3db(fitsfile *fptr, long group, LONGLONG ncols, LONGLONG nrows, LONGLONG naxis1, LONGLONG naxis2, LONGLONG naxis3, unsigned char *array, int *status); int CFITS_API ffp3dsb(fitsfile *fptr, long group, LONGLONG ncols, LONGLONG nrows, LONGLONG naxis1, LONGLONG naxis2, LONGLONG naxis3, signed char *array, int *status); int CFITS_API ffp3dui(fitsfile *fptr, long group, LONGLONG ncols, LONGLONG nrows, LONGLONG naxis1, LONGLONG naxis2, LONGLONG naxis3, unsigned short *array, int *status); int CFITS_API ffp3di(fitsfile *fptr, long group, LONGLONG ncols, LONGLONG nrows, LONGLONG naxis1, LONGLONG naxis2, LONGLONG naxis3, short *array, int *status); int CFITS_API ffp3duj(fitsfile *fptr, long group, LONGLONG ncols, LONGLONG nrows, LONGLONG naxis1, LONGLONG naxis2, LONGLONG naxis3, unsigned long *array, int *status); int CFITS_API ffp3dj(fitsfile *fptr, long group, LONGLONG ncols, LONGLONG nrows, LONGLONG naxis1, LONGLONG naxis2, LONGLONG naxis3, long *array, int *status); int CFITS_API ffp3duk(fitsfile *fptr, long group, LONGLONG ncols, LONGLONG nrows, LONGLONG naxis1, LONGLONG naxis2, LONGLONG naxis3, unsigned int *array, int *status); int CFITS_API ffp3dk(fitsfile *fptr, long group, LONGLONG ncols, LONGLONG nrows, LONGLONG naxis1, LONGLONG naxis2, LONGLONG naxis3, int *array, int *status); int CFITS_API ffp3de(fitsfile *fptr, long group, LONGLONG ncols, LONGLONG nrows, LONGLONG naxis1, LONGLONG naxis2, LONGLONG naxis3, float *array, int *status); int CFITS_API ffp3dd(fitsfile *fptr, long group, LONGLONG ncols, LONGLONG nrows, LONGLONG naxis1, LONGLONG naxis2, LONGLONG naxis3, double *array, int *status); int CFITS_API ffp3djj(fitsfile *fptr, long group, LONGLONG ncols, LONGLONG nrows, LONGLONG naxis1, LONGLONG naxis2, LONGLONG naxis3, LONGLONG *array, int *status); int CFITS_API ffpss(fitsfile *fptr, int datatype, long *fpixel, long *lpixel, void *array, int *status); int CFITS_API ffpssb(fitsfile *fptr, long group, long naxis, long *naxes, long *fpixel, long *lpixel, unsigned char *array, int *status); int CFITS_API ffpsssb(fitsfile *fptr, long group, long naxis, long *naxes, long *fpixel, long *lpixel, signed char *array, int *status); int CFITS_API ffpssui(fitsfile *fptr, long group, long naxis, long *naxes, long *fpixel, long *lpixel, unsigned short *array, int *status); int CFITS_API ffpssi(fitsfile *fptr, long group, long naxis, long *naxes, long *fpixel, long *lpixel, short *array, int *status); int CFITS_API ffpssuj(fitsfile *fptr, long group, long naxis, long *naxes, long *fpixel, long *lpixel, unsigned long *array, int *status); int CFITS_API ffpssj(fitsfile *fptr, long group, long naxis, long *naxes, long *fpixel, long *lpixel, long *array, int *status); int CFITS_API ffpssuk(fitsfile *fptr, long group, long naxis, long *naxes, long *fpixel, long *lpixel, unsigned int *array, int *status); int CFITS_API ffpssk(fitsfile *fptr, long group, long naxis, long *naxes, long *fpixel, long *lpixel, int *array, int *status); int CFITS_API ffpsse(fitsfile *fptr, long group, long naxis, long *naxes, long *fpixel, long *lpixel, float *array, int *status); int CFITS_API ffpssd(fitsfile *fptr, long group, long naxis, long *naxes, long *fpixel, long *lpixel, double *array, int *status); int CFITS_API ffpssjj(fitsfile *fptr, long group, long naxis, long *naxes, long *fpixel, long *lpixel, LONGLONG *array, int *status); int CFITS_API ffpgpb(fitsfile *fptr, long group, long firstelem, long nelem, unsigned char *array, int *status); int CFITS_API ffpgpsb(fitsfile *fptr, long group, long firstelem, long nelem, signed char *array, int *status); int CFITS_API ffpgpui(fitsfile *fptr, long group, long firstelem, long nelem, unsigned short *array, int *status); int CFITS_API ffpgpi(fitsfile *fptr, long group, long firstelem, long nelem, short *array, int *status); int CFITS_API ffpgpuj(fitsfile *fptr, long group, long firstelem, long nelem, unsigned long *array, int *status); int CFITS_API ffpgpj(fitsfile *fptr, long group, long firstelem, long nelem, long *array, int *status); int CFITS_API ffpgpuk(fitsfile *fptr, long group, long firstelem, long nelem, unsigned int *array, int *status); int CFITS_API ffpgpk(fitsfile *fptr, long group, long firstelem, long nelem, int *array, int *status); int CFITS_API ffpgpe(fitsfile *fptr, long group, long firstelem, long nelem, float *array, int *status); int CFITS_API ffpgpd(fitsfile *fptr, long group, long firstelem, long nelem, double *array, int *status); int CFITS_API ffpgpjj(fitsfile *fptr, long group, long firstelem, long nelem, LONGLONG *array, int *status); /*--------------------- iterator functions -------------*/ int CFITS_API fits_iter_set_by_name(iteratorCol *col, fitsfile *fptr, char *colname, int datatype, int iotype); int CFITS_API fits_iter_set_by_num(iteratorCol *col, fitsfile *fptr, int colnum, int datatype, int iotype); int CFITS_API fits_iter_set_file(iteratorCol *col, fitsfile *fptr); int CFITS_API fits_iter_set_colname(iteratorCol *col, char *colname); int CFITS_API fits_iter_set_colnum(iteratorCol *col, int colnum); int CFITS_API fits_iter_set_datatype(iteratorCol *col, int datatype); int CFITS_API fits_iter_set_iotype(iteratorCol *col, int iotype); CFITS_API fitsfile * fits_iter_get_file(iteratorCol *col); char CFITS_API * fits_iter_get_colname(iteratorCol *col); int CFITS_API fits_iter_get_colnum(iteratorCol *col); int CFITS_API fits_iter_get_datatype(iteratorCol *col); int CFITS_API fits_iter_get_iotype(iteratorCol *col); void CFITS_API *fits_iter_get_array(iteratorCol *col); long CFITS_API fits_iter_get_tlmin(iteratorCol *col); long CFITS_API fits_iter_get_tlmax(iteratorCol *col); long CFITS_API fits_iter_get_repeat(iteratorCol *col); char CFITS_API *fits_iter_get_tunit(iteratorCol *col); char CFITS_API *fits_iter_get_tdisp(iteratorCol *col); int CFITS_API ffiter(int ncols, iteratorCol *data, long offset, long nPerLoop, int (*workFn)( long totaln, long offset, long firstn, long nvalues, int narrays, iteratorCol *data, void *userPointer), void *userPointer, int *status); /*--------------------- write column elements -------------*/ int CFITS_API ffpcl(fitsfile *fptr, int datatype, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, void *array, int *status); int CFITS_API ffpcls(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, char **array, int *status); int CFITS_API ffpcll(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, char *array, int *status); int CFITS_API ffpclb(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, unsigned char *array, int *status); int CFITS_API ffpclsb(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, signed char *array, int *status); int CFITS_API ffpclui(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, unsigned short *array, int *status); int CFITS_API ffpcli(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, short *array, int *status); int CFITS_API ffpcluj(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, unsigned long *array, int *status); int CFITS_API ffpclj(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, long *array, int *status); int CFITS_API ffpcluk(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, unsigned int *array, int *status); int CFITS_API ffpclk(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, int *array, int *status); int CFITS_API ffpcle(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, float *array, int *status); int CFITS_API ffpcld(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, double *array, int *status); int CFITS_API ffpclc(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, float *array, int *status); int CFITS_API ffpclm(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, double *array, int *status); int CFITS_API ffpclu(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, int *status); int CFITS_API ffprwu(fitsfile *fptr, LONGLONG firstrow, LONGLONG nrows, int *status); int CFITS_API ffpcljj(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, LONGLONG *array, int *status); int CFITS_API ffpclx(fitsfile *fptr, int colnum, LONGLONG frow, long fbit, long nbit, char *larray, int *status); int CFITS_API ffpcn(fitsfile *fptr, int datatype, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, void *array, void *nulval, int *status); int CFITS_API ffpcns( fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, char **array, char *nulvalue, int *status); int CFITS_API ffpcnl( fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, char *array, char nulvalue, int *status); int CFITS_API ffpcnb(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, unsigned char *array, unsigned char nulvalue, int *status); int CFITS_API ffpcnsb(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, signed char *array, signed char nulvalue, int *status); int CFITS_API ffpcnui(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, unsigned short *array, unsigned short nulvalue, int *status); int CFITS_API ffpcni(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, short *array, short nulvalue, int *status); int CFITS_API ffpcnuj(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, unsigned long *array, unsigned long nulvalue, int *status); int CFITS_API ffpcnj(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, long *array, long nulvalue, int *status); int CFITS_API ffpcnuk(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, unsigned int *array, unsigned int nulvalue, int *status); int CFITS_API ffpcnk(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, int *array, int nulvalue, int *status); int CFITS_API ffpcne(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, float *array, float nulvalue, int *status); int CFITS_API ffpcnd(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, double *array, double nulvalue, int *status); int CFITS_API ffpcnjj(fitsfile *fptr, int colnum, LONGLONG firstrow, LONGLONG firstelem, LONGLONG nelem, LONGLONG *array, LONGLONG nulvalue, int *status); int CFITS_API ffptbb(fitsfile *fptr, LONGLONG firstrow, LONGLONG firstchar, LONGLONG nchars, unsigned char *values, int *status); int CFITS_API ffirow(fitsfile *fptr, LONGLONG firstrow, LONGLONG nrows, int *status); int CFITS_API ffdrow(fitsfile *fptr, LONGLONG firstrow, LONGLONG nrows, int *status); int CFITS_API ffdrrg(fitsfile *fptr, char *ranges, int *status); int CFITS_API ffdrws(fitsfile *fptr, long *rownum, long nrows, int *status); int CFITS_API ffdrwsll(fitsfile *fptr, LONGLONG *rownum, LONGLONG nrows, int *status); int CFITS_API fficol(fitsfile *fptr, int numcol, char *ttype, char *tform, int *status); int CFITS_API fficls(fitsfile *fptr, int firstcol, int ncols, char **ttype, char **tform, int *status); int CFITS_API ffmvec(fitsfile *fptr, int colnum, LONGLONG newveclen, int *status); int CFITS_API ffdcol(fitsfile *fptr, int numcol, int *status); int CFITS_API ffcpcl(fitsfile *infptr, fitsfile *outfptr, int incol, int outcol, int create_col, int *status); int CFITS_API ffcprw(fitsfile *infptr, fitsfile *outfptr, LONGLONG firstrow, LONGLONG nrows, int *status); /*--------------------- WCS Utilities ------------------*/ int CFITS_API ffgics(fitsfile *fptr, double *xrval, double *yrval, double *xrpix, double *yrpix, double *xinc, double *yinc, double *rot, char *type, int *status); int CFITS_API ffgicsa(fitsfile *fptr, char version, double *xrval, double *yrval, double *xrpix, double *yrpix, double *xinc, double *yinc, double *rot, char *type, int *status); int CFITS_API ffgtcs(fitsfile *fptr, int xcol, int ycol, double *xrval, double *yrval, double *xrpix, double *yrpix, double *xinc, double *yinc, double *rot, char *type, int *status); int CFITS_API ffwldp(double xpix, double ypix, double xref, double yref, double xrefpix, double yrefpix, double xinc, double yinc, double rot, char *type, double *xpos, double *ypos, int *status); int CFITS_API ffxypx(double xpos, double ypos, double xref, double yref, double xrefpix, double yrefpix, double xinc, double yinc, double rot, char *type, double *xpix, double *ypix, int *status); /* WCS support routines (provide interface to Doug Mink's WCS library */ int CFITS_API ffgiwcs(fitsfile *fptr, char **header, int *status); int CFITS_API ffgtwcs(fitsfile *fptr, int xcol, int ycol, char **header, int *status); /*--------------------- lexical parsing routines ------------------*/ int CFITS_API fftexp( fitsfile *fptr, char *expr, int maxdim, int *datatype, long *nelem, int *naxis, long *naxes, int *status ); int CFITS_API fffrow( fitsfile *infptr, char *expr, long firstrow, long nrows, long *n_good_rows, char *row_status, int *status); int CFITS_API ffffrw( fitsfile *fptr, char *expr, long *rownum, int *status); int CFITS_API fffrwc( fitsfile *fptr, char *expr, char *timeCol, char *parCol, char *valCol, long ntimes, double *times, char *time_status, int *status ); int CFITS_API ffsrow( fitsfile *infptr, fitsfile *outfptr, char *expr, int *status); int CFITS_API ffcrow( fitsfile *fptr, int datatype, char *expr, long firstrow, long nelements, void *nulval, void *array, int *anynul, int *status ); int CFITS_API ffcalc_rng( fitsfile *infptr, char *expr, fitsfile *outfptr, char *parName, char *parInfo, int nRngs, long *start, long *end, int *status ); int CFITS_API ffcalc( fitsfile *infptr, char *expr, fitsfile *outfptr, char *parName, char *parInfo, int *status ); /* ffhist is not really intended as a user-callable routine */ /* but it may be useful for some specialized applications */ /* ffhist2 is a newer version which is strongly recommended instead of ffhist */ int CFITS_API ffhist(fitsfile **fptr, char *outfile, int imagetype, int naxis, char colname[4][FLEN_VALUE], double *minin, double *maxin, double *binsizein, char minname[4][FLEN_VALUE], char maxname[4][FLEN_VALUE], char binname[4][FLEN_VALUE], double weightin, char wtcol[FLEN_VALUE], int recip, char *rowselect, int *status); int CFITS_API ffhist2(fitsfile **fptr, char *outfile, int imagetype, int naxis, char colname[4][FLEN_VALUE], double *minin, double *maxin, double *binsizein, char minname[4][FLEN_VALUE], char maxname[4][FLEN_VALUE], char binname[4][FLEN_VALUE], double weightin, char wtcol[FLEN_VALUE], int recip, char *rowselect, int *status); int CFITS_API fits_select_image_section(fitsfile **fptr, char *outfile, char *imagesection, int *status); int CFITS_API fits_copy_image_section(fitsfile *infptr, fitsfile *outfile, char *imagesection, int *status); int CFITS_API fits_calc_binning(fitsfile *fptr, int naxis, char colname[4][FLEN_VALUE], double *minin, double *maxin, double *binsizein, char minname[4][FLEN_VALUE], char maxname[4][FLEN_VALUE], char binname[4][FLEN_VALUE], int *colnum, long *haxes, float *amin, float *amax, float *binsize, int *status); int CFITS_API fits_write_keys_histo(fitsfile *fptr, fitsfile *histptr, int naxis, int *colnum, int *status); int CFITS_API fits_rebin_wcs( fitsfile *fptr, int naxis, float *amin, float *binsize, int *status); int CFITS_API fits_make_hist(fitsfile *fptr, fitsfile *histptr, int bitpix,int naxis, long *naxes, int *colnum, float *amin, float *amax, float *binsize, float weight, int wtcolnum, int recip, char *selectrow, int *status); typedef struct { /* input(s) */ int count; char ** path; char ** tag; fitsfile ** ifptr; char * expression; /* output control */ int bitpix; long blank; fitsfile * ofptr; char keyword[FLEN_KEYWORD]; char comment[FLEN_COMMENT]; } PixelFilter; int CFITS_API fits_pixel_filter (PixelFilter * filter, int * status); /*--------------------- grouping routines ------------------*/ int CFITS_API ffgtcr(fitsfile *fptr, char *grpname, int grouptype, int *status); int CFITS_API ffgtis(fitsfile *fptr, char *grpname, int grouptype, int *status); int CFITS_API ffgtch(fitsfile *gfptr, int grouptype, int *status); int CFITS_API ffgtrm(fitsfile *gfptr, int rmopt, int *status); int CFITS_API ffgtcp(fitsfile *infptr, fitsfile *outfptr, int cpopt, int *status); int CFITS_API ffgtmg(fitsfile *infptr, fitsfile *outfptr, int mgopt, int *status); int CFITS_API ffgtcm(fitsfile *gfptr, int cmopt, int *status); int CFITS_API ffgtvf(fitsfile *gfptr, long *firstfailed, int *status); int CFITS_API ffgtop(fitsfile *mfptr,int group,fitsfile **gfptr,int *status); int CFITS_API ffgtam(fitsfile *gfptr, fitsfile *mfptr, int hdupos, int *status); int CFITS_API ffgtnm(fitsfile *gfptr, long *nmembers, int *status); int CFITS_API ffgmng(fitsfile *mfptr, long *nmembers, int *status); int CFITS_API ffgmop(fitsfile *gfptr, long member, fitsfile **mfptr, int *status); int CFITS_API ffgmcp(fitsfile *gfptr, fitsfile *mfptr, long member, int cpopt, int *status); int CFITS_API ffgmtf(fitsfile *infptr, fitsfile *outfptr, long member, int tfopt, int *status); int CFITS_API ffgmrm(fitsfile *fptr, long member, int rmopt, int *status); /*--------------------- group template parser routines ------------------*/ int CFITS_API fits_execute_template(fitsfile *ff, char *ngp_template, int *status); int CFITS_API fits_img_stats_short(short *array,long nx, long ny, int nullcheck, short nullvalue,long *ngoodpix, short *minvalue, short *maxvalue, double *mean, double *sigma, double *noise1, double *noise2, double *noise3, double *noise5, int *status); int CFITS_API fits_img_stats_int(int *array,long nx, long ny, int nullcheck, int nullvalue,long *ngoodpix, int *minvalue, int *maxvalue, double *mean, double *sigma, double *noise1, double *noise2, double *noise3, double *noise5, int *status); int CFITS_API fits_img_stats_float(float *array, long nx, long ny, int nullcheck, float nullvalue,long *ngoodpix, float *minvalue, float *maxvalue, double *mean, double *sigma, double *noise1, double *noise2, double *noise3, double *noise5, int *status); /*--------------------- image compression routines ------------------*/ int CFITS_API fits_set_compression_type(fitsfile *fptr, int ctype, int *status); int CFITS_API fits_set_tile_dim(fitsfile *fptr, int ndim, long *dims, int *status); int CFITS_API fits_set_noise_bits(fitsfile *fptr, int noisebits, int *status); int CFITS_API fits_set_quantize_level(fitsfile *fptr, float qlevel, int *status); int CFITS_API fits_set_hcomp_scale(fitsfile *fptr, float scale, int *status); int CFITS_API fits_set_hcomp_smooth(fitsfile *fptr, int smooth, int *status); int CFITS_API fits_set_quantize_method(fitsfile *fptr, int method, int *status); int CFITS_API fits_set_quantize_dither(fitsfile *fptr, int dither, int *status); int CFITS_API fits_set_dither_seed(fitsfile *fptr, int seed, int *status); int CFITS_API fits_set_dither_offset(fitsfile *fptr, int offset, int *status); int CFITS_API fits_set_lossy_int(fitsfile *fptr, int lossy_int, int *status); int CFITS_API fits_set_huge_hdu(fitsfile *fptr, int huge, int *status); int CFITS_API fits_set_compression_pref(fitsfile *infptr, fitsfile *outfptr, int *status); int CFITS_API fits_get_compression_type(fitsfile *fptr, int *ctype, int *status); int CFITS_API fits_get_tile_dim(fitsfile *fptr, int ndim, long *dims, int *status); int CFITS_API fits_get_quantize_level(fitsfile *fptr, float *qlevel, int *status); int CFITS_API fits_get_noise_bits(fitsfile *fptr, int *noisebits, int *status); int CFITS_API fits_get_hcomp_scale(fitsfile *fptr, float *scale, int *status); int CFITS_API fits_get_hcomp_smooth(fitsfile *fptr, int *smooth, int *status); int CFITS_API fits_get_dither_seed(fitsfile *fptr, int *seed, int *status); int CFITS_API fits_img_compress(fitsfile *infptr, fitsfile *outfptr, int *status); int CFITS_API fits_compress_img(fitsfile *infptr, fitsfile *outfptr, int compress_type, long *tilesize, int parm1, int parm2, int *status); int CFITS_API fits_is_compressed_image(fitsfile *fptr, int *status); int CFITS_API fits_is_reentrant(void); int CFITS_API fits_decompress_img (fitsfile *infptr, fitsfile *outfptr, int *status); int CFITS_API fits_img_decompress_header(fitsfile *infptr, fitsfile *outfptr, int *status); int CFITS_API fits_img_decompress (fitsfile *infptr, fitsfile *outfptr, int *status); /* H-compress routines */ int CFITS_API fits_hcompress(int *a, int nx, int ny, int scale, char *output, long *nbytes, int *status); int CFITS_API fits_hcompress64(LONGLONG *a, int nx, int ny, int scale, char *output, long *nbytes, int *status); int CFITS_API fits_hdecompress(unsigned char *input, int smooth, int *a, int *nx, int *ny, int *scale, int *status); int CFITS_API fits_hdecompress64(unsigned char *input, int smooth, LONGLONG *a, int *nx, int *ny, int *scale, int *status); int CFITS_API fits_compress_table (fitsfile *infptr, fitsfile *outfptr, int *status); int CFITS_API fits_uncompress_table(fitsfile *infptr, fitsfile *outfptr, int *status); /* The following exclusion if __CINT__ is defined is needed for ROOT */ #ifndef __CINT__ #ifdef __cplusplus } #endif #endif #endif healpy-1.8.1/cfitsio/putcoluk.c0000654000175000017530000010442312272000775017073 0ustar zoncaplanck00000000000000/* This file, putcolk.c, contains routines that write data elements to */ /* a FITS image or table, with 'unsigned int' datatype. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffppruk(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to write(1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ unsigned int *array, /* I - array of values that are written */ int *status) /* IO - error status */ /* Write an array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long row; unsigned int nullvalue; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_write_compressed_pixels(fptr, TUINT, firstelem, nelem, 0, array, &nullvalue, status); return(*status); } row=maxvalue(1,group); ffpcluk(fptr, 2, row, firstelem, nelem, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffppnuk(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG firstelem, /* I - first vector element to write(1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ unsigned int *array, /* I - array of values that are written */ unsigned int nulval, /* I - undefined pixel value */ int *status) /* IO - error status */ /* Write an array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). Any array values that are equal to the value of nulval will be replaced with the null pixel value that is appropriate for this column. */ { long row; unsigned int nullvalue; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ nullvalue = nulval; /* set local variable */ fits_write_compressed_pixels(fptr, TUINT, firstelem, nelem, 1, array, &nullvalue, status); return(*status); } row=maxvalue(1,group); ffpcnuk(fptr, 2, row, firstelem, nelem, array, nulval, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffp2duk(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ unsigned int *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write an entire 2-D array of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { /* call the 3D writing routine, with the 3rd dimension = 1 */ ffp3duk(fptr, group, ncols, naxis2, naxis1, naxis2, 1, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffp3duk(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ LONGLONG ncols, /* I - number of pixels in each row of array */ LONGLONG nrows, /* I - number of rows in each plane of array */ LONGLONG naxis1, /* I - FITS image NAXIS1 value */ LONGLONG naxis2, /* I - FITS image NAXIS2 value */ LONGLONG naxis3, /* I - FITS image NAXIS3 value */ unsigned int *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write an entire 3-D cube of values to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long tablerow, ii, jj; long fpixel[3]= {1,1,1}, lpixel[3]; LONGLONG nfits, narray; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ lpixel[0] = (long) ncols; lpixel[1] = (long) nrows; lpixel[2] = (long) naxis3; fits_write_compressed_img(fptr, TUINT, fpixel, lpixel, 0, array, NULL, status); return(*status); } tablerow=maxvalue(1,group); if (ncols == naxis1 && nrows == naxis2) /* arrays have same size? */ { /* all the image pixels are contiguous, so write all at once */ ffpcluk(fptr, 2, tablerow, 1L, naxis1 * naxis2 * naxis3, array, status); return(*status); } if (ncols < naxis1 || nrows < naxis2) return(*status = BAD_DIMEN); nfits = 1; /* next pixel in FITS image to write to */ narray = 0; /* next pixel in input array to be written */ /* loop over naxis3 planes in the data cube */ for (jj = 0; jj < naxis3; jj++) { /* loop over the naxis2 rows in the FITS image, */ /* writing naxis1 pixels to each row */ for (ii = 0; ii < naxis2; ii++) { if (ffpcluk(fptr, 2, tablerow, nfits, naxis1,&array[narray],status) > 0) return(*status); nfits += naxis1; narray += ncols; } narray += (nrows - naxis2) * ncols; } return(*status); } /*--------------------------------------------------------------------------*/ int ffpssuk(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ long naxis, /* I - number of data axes in array */ long *naxes, /* I - size of each FITS axis */ long *fpixel, /* I - 1st pixel in each axis to write (1=1st) */ long *lpixel, /* I - last pixel in each axis to write */ unsigned int *array, /* I - array to be written */ int *status) /* IO - error status */ /* Write a subsection of pixels to the primary array or image. A subsection is defined to be any contiguous rectangular array of pixels within the n-dimensional FITS data file. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long tablerow; LONGLONG fpix[7], dimen[7], astart, pstart; LONGLONG off2, off3, off4, off5, off6, off7; LONGLONG st10, st20, st30, st40, st50, st60, st70; LONGLONG st1, st2, st3, st4, st5, st6, st7; long ii, i1, i2, i3, i4, i5, i6, i7, irange[7]; if (*status > 0) return(*status); if (fits_is_compressed_image(fptr, status)) { /* this is a compressed image in a binary table */ fits_write_compressed_img(fptr, TUINT, fpixel, lpixel, 0, array, NULL, status); return(*status); } if (naxis < 1 || naxis > 7) return(*status = BAD_DIMEN); tablerow=maxvalue(1,group); /* calculate the size and number of loops to perform in each dimension */ for (ii = 0; ii < 7; ii++) { fpix[ii]=1; irange[ii]=1; dimen[ii]=1; } for (ii = 0; ii < naxis; ii++) { fpix[ii]=fpixel[ii]; irange[ii]=lpixel[ii]-fpixel[ii]+1; dimen[ii]=naxes[ii]; } i1=irange[0]; /* compute the pixel offset between each dimension */ off2 = dimen[0]; off3 = off2 * dimen[1]; off4 = off3 * dimen[2]; off5 = off4 * dimen[3]; off6 = off5 * dimen[4]; off7 = off6 * dimen[5]; st10 = fpix[0]; st20 = (fpix[1] - 1) * off2; st30 = (fpix[2] - 1) * off3; st40 = (fpix[3] - 1) * off4; st50 = (fpix[4] - 1) * off5; st60 = (fpix[5] - 1) * off6; st70 = (fpix[6] - 1) * off7; /* store the initial offset in each dimension */ st1 = st10; st2 = st20; st3 = st30; st4 = st40; st5 = st50; st6 = st60; st7 = st70; astart = 0; for (i7 = 0; i7 < irange[6]; i7++) { for (i6 = 0; i6 < irange[5]; i6++) { for (i5 = 0; i5 < irange[4]; i5++) { for (i4 = 0; i4 < irange[3]; i4++) { for (i3 = 0; i3 < irange[2]; i3++) { pstart = st1 + st2 + st3 + st4 + st5 + st6 + st7; for (i2 = 0; i2 < irange[1]; i2++) { if (ffpcluk(fptr, 2, tablerow, pstart, i1, &array[astart], status) > 0) return(*status); astart += i1; pstart += off2; } st2 = st20; st3 = st3+off3; } st3 = st30; st4 = st4+off4; } st4 = st40; st5 = st5+off5; } st5 = st50; st6 = st6+off6; } st6 = st60; st7 = st7+off7; } return(*status); } /*--------------------------------------------------------------------------*/ int ffpgpuk(fitsfile *fptr, /* I - FITS file pointer */ long group, /* I - group to write(1 = 1st group) */ long firstelem, /* I - first vector element to write(1 = 1st) */ long nelem, /* I - number of values to write */ unsigned int *array, /* I - array of values that are written */ int *status) /* IO - error status */ /* Write an array of group parameters to the primary array. Data conversion and scaling will be performed if necessary (e.g, if the datatype of the FITS array is not the same as the array being written). */ { long row; /* the primary array is represented as a binary table: each group of the primary array is a row in the table, where the first column contains the group parameters and the second column contains the image itself. */ row=maxvalue(1,group); ffpcluk(fptr, 1L, row, firstelem, nelem, array, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffpcluk(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ unsigned int *array, /* I - array of values to write */ int *status) /* IO - error status */ /* Write an array of values to a column in the current FITS HDU. The column number may refer to a real column in an ASCII or binary table, or it may refer to a virtual column in a 1 or more grouped FITS primary array. FITSIO treats a primary array as a binary table with 2 vector columns: the first column contains the group parameters (often with length = 0) and the second column contains the array of image pixels. Each row of the table represents a group in the case of multigroup FITS images. The input array of values will be converted to the datatype of the column and will be inverse-scaled by the FITS TSCALn and TZEROn values if necessary. */ { int tcode, maxelem, hdutype; long twidth, incre; long ntodo; LONGLONG repeat, startpos, elemnum, wrtptr, rowlen, rownum, remain, next, tnull; double scale, zero; char tform[20], cform[20]; char message[FLEN_ERRMSG]; char snull[20]; /* the FITS null value */ double cbuff[DBUFFSIZE / sizeof(double)]; /* align cbuff on word boundary */ void *buffer; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* call the 'short' or 'long' version of this routine, if possible */ if (sizeof(int) == sizeof(short)) ffpclui(fptr, colnum, firstrow, firstelem, nelem, (unsigned short *) array, status); else if (sizeof(int) == sizeof(long)) ffpcluj(fptr, colnum, firstrow, firstelem, nelem, (unsigned long *) array, status); else { /* This is a special case: sizeof(int) is not equal to sizeof(short) or sizeof(long). This occurs on Alpha OSF systems where short = 2 bytes, int = 4 bytes, and long = 8 bytes. */ buffer = cbuff; /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if (ffgcprll( fptr, colnum, firstrow, firstelem, nelem, 1, &scale, &zero, tform, &twidth, &tcode, &maxelem, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, snull, status) > 0) return(*status); if (tcode == TSTRING) ffcfmt(tform, cform); /* derive C format for writing strings */ /*---------------------------------------------------------------------*/ /* Now write the pixels to the FITS column. */ /* First call the ffXXfYY routine to (1) convert the datatype */ /* if necessary, and (2) scale the values by the FITS TSCALn and */ /* TZEROn linear scaling parameters into a temporary buffer. */ /*---------------------------------------------------------------------*/ remain = nelem; /* remaining number of values to write */ next = 0; /* next element in array to be written */ rownum = 0; /* row number, relative to firstrow */ while (remain) { /* limit the number of pixels to process a one time to the number that will fit in the buffer space or to the number of pixels that remain in the current vector, which ever is smaller. */ ntodo = (long) minvalue(remain, maxelem); ntodo = (long) minvalue(ntodo, (repeat - elemnum)); wrtptr = startpos + ((LONGLONG)rownum * rowlen) + (elemnum * incre); ffmbyt(fptr, wrtptr, IGNORE_EOF, status); /* move to write position */ switch (tcode) { case (TLONG): /* convert the raw data before writing to FITS file */ ffuintfi4(&array[next], ntodo, scale, zero, (INT32BIT *) buffer, status); ffpi4b(fptr, ntodo, incre, (INT32BIT *) buffer, status); break; case (TLONGLONG): ffuintfi8(&array[next], ntodo, scale, zero, (LONGLONG *) buffer, status); ffpi8b(fptr, ntodo, incre, (long *) buffer, status); break; case (TBYTE): ffuintfi1(&array[next], ntodo, scale, zero, (unsigned char *) buffer, status); ffpi1b(fptr, ntodo, incre, (unsigned char *) buffer, status); break; case (TSHORT): ffuintfi2(&array[next], ntodo, scale, zero, (short *) buffer, status); ffpi2b(fptr, ntodo, incre, (short *) buffer, status); break; case (TFLOAT): ffuintfr4(&array[next], ntodo, scale, zero, (float *) buffer, status); ffpr4b(fptr, ntodo, incre, (float *) buffer, status); break; case (TDOUBLE): ffuintfr8(&array[next], ntodo, scale, zero, (double *) buffer, status); ffpr8b(fptr, ntodo, incre, (double *) buffer, status); break; case (TSTRING): /* numerical column in an ASCII table */ if (cform[1] != 's') /* "%s" format is a string */ { ffuintfstr(&array[next], ntodo, scale, zero, cform, twidth, (char *) buffer, status); if (incre == twidth) /* contiguous bytes */ ffpbyt(fptr, ntodo * twidth, buffer, status); else ffpbytoff(fptr, twidth, ntodo, incre - twidth, buffer, status); break; } /* can't write to string column, so fall thru to default: */ default: /* error trap */ sprintf(message, "Cannot write numbers to column %d which has format %s", colnum,tform); ffpmsg(message); if (hdutype == ASCII_TBL) return(*status = BAD_ATABLE_FORMAT); else return(*status = BAD_BTABLE_FORMAT); } /* End of switch block */ /*-------------------------*/ /* Check for fatal error */ /*-------------------------*/ if (*status > 0) /* test for error during previous write operation */ { sprintf(message, "Error writing elements %.0f thru %.0f of input data array (ffpcluk).", (double) (next+1), (double) (next+ntodo)); ffpmsg(message); return(*status); } /*--------------------------------------------*/ /* increment the counters for the next loop */ /*--------------------------------------------*/ remain -= ntodo; if (remain) { next += ntodo; elemnum += ntodo; if (elemnum == repeat) /* completed a row; start on next row */ { elemnum = 0; rownum++; } } } /* End of main while Loop */ /*--------------------------------*/ /* check for numerical overflow */ /*--------------------------------*/ if (*status == OVERFLOW_ERR) { ffpmsg( "Numerical overflow during type conversion while writing FITS data."); *status = NUM_OVERFLOW; } } /* end of Dec ALPHA special case */ return(*status); } /*--------------------------------------------------------------------------*/ int ffpcnuk(fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - number of column to write (1 = 1st col) */ LONGLONG firstrow, /* I - first row to write (1 = 1st row) */ LONGLONG firstelem, /* I - first vector element to write (1 = 1st) */ LONGLONG nelem, /* I - number of values to write */ unsigned int *array, /* I - array of values to write */ unsigned int nulvalue, /* I - value used to flag undefined pixels */ int *status) /* IO - error status */ /* Write an array of elements to the specified column of a table. Any input pixels equal to the value of nulvalue will be replaced by the appropriate null value in the output FITS file. The input array of values will be converted to the datatype of the column and will be inverse-scaled by the FITS TSCALn and TZEROn values if necessary */ { tcolumn *colptr; LONGLONG ngood = 0, nbad = 0, ii; LONGLONG repeat, first, fstelm, fstrow; int tcode, overflow = 0; if (*status > 0) return(*status); /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) { ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); } else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) { if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); } colptr = (fptr->Fptr)->tableptr; /* point to first column */ colptr += (colnum - 1); /* offset to correct column structure */ tcode = colptr->tdatatype; if (tcode > 0) repeat = colptr->trepeat; /* repeat count for this column */ else repeat = firstelem -1 + nelem; /* variable length arrays */ /* if variable length array, first write the whole input vector, then go back and fill in the nulls */ if (tcode < 0) { if (ffpcluk(fptr, colnum, firstrow, firstelem, nelem, array, status) > 0) { if (*status == NUM_OVERFLOW) { /* ignore overflows, which are possibly the null pixel values */ /* overflow = 1; */ *status = 0; } else { return(*status); } } } /* absolute element number in the column */ first = (firstrow - 1) * repeat + firstelem; for (ii = 0; ii < nelem; ii++) { if (array[ii] != nulvalue) /* is this a good pixel? */ { if (nbad) /* write previous string of bad pixels */ { fstelm = ii - nbad + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (ffpclu(fptr, colnum, fstrow, fstelm, nbad, status) > 0) return(*status); nbad=0; } ngood = ngood +1; /* the consecutive number of good pixels */ } else { if (ngood) /* write previous string of good pixels */ { fstelm = ii - ngood + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (tcode > 0) { /* variable length arrays have already been written */ if (ffpcluk(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status) > 0) { if (*status == NUM_OVERFLOW) { overflow = 1; *status = 0; } else { return(*status); } } } ngood=0; } nbad = nbad +1; /* the consecutive number of bad pixels */ } } /* finished loop; now just write the last set of pixels */ if (ngood) /* write last string of good pixels */ { fstelm = ii - ngood + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ if (tcode > 0) { /* variable length arrays have already been written */ ffpcluk(fptr, colnum, fstrow, fstelm, ngood, &array[ii-ngood], status); } } else if (nbad) /* write last string of bad pixels */ { fstelm = ii - nbad + first; /* absolute element number */ fstrow = (fstelm - 1) / repeat + 1; /* starting row number */ fstelm = fstelm - (fstrow - 1) * repeat; /* relative number */ ffpclu(fptr, colnum, fstrow, fstelm, nbad, status); } if (*status <= 0) { if (overflow) { *status = NUM_OVERFLOW; } } return(*status); } /*--------------------------------------------------------------------------*/ int ffuintfi1(unsigned int *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ unsigned char *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { if (input[ii] > UCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = input[ii]; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DUCHAR_MIN) { *status = OVERFLOW_ERR; output[ii] = 0; } else if (dvalue > DUCHAR_MAX) { *status = OVERFLOW_ERR; output[ii] = UCHAR_MAX; } else output[ii] = (unsigned char) (dvalue + .5); } } return(*status); } /*--------------------------------------------------------------------------*/ int ffuintfi2(unsigned int *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ short *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { if (input[ii] > SHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else output[ii] = input[ii]; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DSHRT_MIN) { *status = OVERFLOW_ERR; output[ii] = SHRT_MIN; } else if (dvalue > DSHRT_MAX) { *status = OVERFLOW_ERR; output[ii] = SHRT_MAX; } else { if (dvalue >= 0) output[ii] = (short) (dvalue + .5); else output[ii] = (short) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffuintfi4(unsigned int *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ INT32BIT *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required */ { long ii; double dvalue; if (scale == 1. && zero == 2147483648.) { /* Instead of subtracting 2147483648, it is more efficient */ /* to just flip the sign bit with the XOR operator */ for (ii = 0; ii < ntodo; ii++) output[ii] = ( *(int *) &input[ii] ) ^ 0x80000000; } else if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { if (input[ii] > INT32_MAX) { *status = OVERFLOW_ERR; output[ii] = INT32_MAX; } else output[ii] = input[ii]; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DINT_MIN) { *status = OVERFLOW_ERR; output[ii] = INT32_MIN; } else if (dvalue > DINT_MAX) { *status = OVERFLOW_ERR; output[ii] = INT32_MAX; } else { if (dvalue >= 0) output[ii] = (INT32BIT) (dvalue + .5); else output[ii] = (INT32BIT) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffuintfi8(unsigned int *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ LONGLONG *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required */ { long ii; double dvalue; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = input[ii]; } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; if (dvalue < DLONGLONG_MIN) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MIN; } else if (dvalue > DLONGLONG_MAX) { *status = OVERFLOW_ERR; output[ii] = LONGLONG_MAX; } else { if (dvalue >= 0) output[ii] = (LONGLONG) (dvalue + .5); else output[ii] = (LONGLONG) (dvalue - .5); } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffuintfr4(unsigned int *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ float *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = (float) input[ii]; } else { for (ii = 0; ii < ntodo; ii++) output[ii] = (float) ((input[ii] - zero) / scale); } return(*status); } /*--------------------------------------------------------------------------*/ int ffuintfr8(unsigned int *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ double *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do datatype conversion and scaling if required. */ { long ii; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) output[ii] = (double) input[ii]; } else { for (ii = 0; ii < ntodo; ii++) output[ii] = (input[ii] - zero) / scale; } return(*status); } /*--------------------------------------------------------------------------*/ int ffuintfstr(unsigned int *input, /* I - array of values to be converted */ long ntodo, /* I - number of elements in the array */ double scale, /* I - FITS TSCALn or BSCALE value */ double zero, /* I - FITS TZEROn or BZERO value */ char *cform, /* I - format for output string values */ long twidth, /* I - width of each field, in chars */ char *output, /* O - output array of converted values */ int *status) /* IO - error status */ /* Copy input to output prior to writing output to a FITS file. Do scaling if required. */ { long ii; double dvalue; char *cptr; cptr = output; if (scale == 1. && zero == 0.) { for (ii = 0; ii < ntodo; ii++) { sprintf(output, cform, (double) input[ii]); output += twidth; if (*output) /* if this char != \0, then overflow occurred */ *status = OVERFLOW_ERR; } } else { for (ii = 0; ii < ntodo; ii++) { dvalue = (input[ii] - zero) / scale; sprintf(output, cform, dvalue); output += twidth; if (*output) /* if this char != \0, then overflow occurred */ *status = OVERFLOW_ERR; } } /* replace any commas with periods (e.g., in French locale) */ while ((cptr = strchr(cptr, ','))) *cptr = '.'; return(*status); } healpy-1.8.1/cfitsio/checksum.c0000654000175000017530000004226412272000775017033 0ustar zoncaplanck00000000000000/* This file, checksum.c, contains the checksum-related routines in the */ /* FITSIO library. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include "fitsio2.h" /*------------------------------------------------------------------------*/ int ffcsum(fitsfile *fptr, /* I - FITS file pointer */ long nrec, /* I - number of 2880-byte blocks to sum */ unsigned long *sum, /* IO - accumulated checksum */ int *status) /* IO - error status */ /* Calculate a 32-bit 1's complement checksum of the FITS 2880-byte blocks. This routine is based on the C algorithm developed by Rob Seaman at NOAO that was presented at the 1994 ADASS conference, published in the Astronomical Society of the Pacific Conference Series. This uses a 32-bit 1's complement checksum in which the overflow bits are permuted back into the sum and therefore all bit positions are sampled evenly. */ { long ii, jj; unsigned short sbuf[1440]; unsigned long hi, lo, hicarry, locarry; if (*status > 0) return(*status); /* Sum the specified number of FITS 2880-byte records. This assumes that the FITSIO file pointer points to the start of the records to be summed. Read each FITS block as 1440 short values (do byte swapping if needed). */ for (jj = 0; jj < nrec; jj++) { ffgbyt(fptr, 2880, sbuf, status); #if BYTESWAPPED ffswap2( (short *)sbuf, 1440); /* reverse order of bytes in each value */ #endif hi = (*sum >> 16); lo = *sum & 0xFFFF; for (ii = 0; ii < 1440; ii += 2) { hi += sbuf[ii]; lo += sbuf[ii+1]; } hicarry = hi >> 16; /* fold carry bits in */ locarry = lo >> 16; while (hicarry | locarry) { hi = (hi & 0xFFFF) + locarry; lo = (lo & 0xFFFF) + hicarry; hicarry = hi >> 16; locarry = lo >> 16; } *sum = (hi << 16) + lo; } return(*status); } /*-------------------------------------------------------------------------*/ void ffesum(unsigned long sum, /* I - accumulated checksum */ int complm, /* I - = 1 to encode complement of the sum */ char *ascii) /* O - 16-char ASCII encoded checksum */ /* encode the 32 bit checksum by converting every 2 bits of each byte into an ASCII character (32 bit word encoded as 16 character string). Only ASCII letters and digits are used to encode the values (no ASCII punctuation characters). If complm=TRUE, then the complement of the sum will be encoded. This routine is based on the C algorithm developed by Rob Seaman at NOAO that was presented at the 1994 ADASS conference, published in the Astronomical Society of the Pacific Conference Series. */ { unsigned int exclude[13] = { 0x3a, 0x3b, 0x3c, 0x3d, 0x3e, 0x3f, 0x40, 0x5b, 0x5c, 0x5d, 0x5e, 0x5f, 0x60 }; unsigned long mask[4] = { 0xff000000, 0xff0000, 0xff00, 0xff }; int offset = 0x30; /* ASCII 0 (zero) */ unsigned long value; int byte, quotient, remainder, ch[4], check, ii, jj, kk; char asc[32]; if (complm) value = 0xFFFFFFFF - sum; /* complement each bit of the value */ else value = sum; for (ii = 0; ii < 4; ii++) { byte = (value & mask[ii]) >> (24 - (8 * ii)); quotient = byte / 4 + offset; remainder = byte % 4; for (jj = 0; jj < 4; jj++) ch[jj] = quotient; ch[0] += remainder; for (check = 1; check;) /* avoid ASCII punctuation */ for (check = 0, kk = 0; kk < 13; kk++) for (jj = 0; jj < 4; jj += 2) if ((unsigned char) ch[jj] == exclude[kk] || (unsigned char) ch[jj+1] == exclude[kk]) { ch[jj]++; ch[jj+1]--; check++; } for (jj = 0; jj < 4; jj++) /* assign the bytes */ asc[4*jj+ii] = ch[jj]; } for (ii = 0; ii < 16; ii++) /* shift the bytes 1 to the right */ ascii[ii] = asc[(ii+15)%16]; ascii[16] = '\0'; } /*-------------------------------------------------------------------------*/ unsigned long ffdsum(char *ascii, /* I - 16-char ASCII encoded checksum */ int complm, /* I - =1 to decode complement of the */ unsigned long *sum) /* O - 32-bit checksum */ /* decode the 16-char ASCII encoded checksum into an unsigned 32-bit long. If complm=TRUE, then the complement of the sum will be decoded. This routine is based on the C algorithm developed by Rob Seaman at NOAO that was presented at the 1994 ADASS conference, published in the Astronomical Society of the Pacific Conference Series. */ { char cbuf[16]; unsigned long hi = 0, lo = 0, hicarry, locarry; int ii; /* remove the permuted FITS byte alignment and the ASCII 0 offset */ for (ii = 0; ii < 16; ii++) { cbuf[ii] = ascii[(ii+1)%16]; cbuf[ii] -= 0x30; } for (ii = 0; ii < 16; ii += 4) { hi += (cbuf[ii] << 8) + cbuf[ii+1]; lo += (cbuf[ii+2] << 8) + cbuf[ii+3]; } hicarry = hi >> 16; locarry = lo >> 16; while (hicarry || locarry) { hi = (hi & 0xFFFF) + locarry; lo = (lo & 0xFFFF) + hicarry; hicarry = hi >> 16; locarry = lo >> 16; } *sum = (hi << 16) + lo; if (complm) *sum = 0xFFFFFFFF - *sum; /* complement each bit of the value */ return(*sum); } /*------------------------------------------------------------------------*/ int ffpcks(fitsfile *fptr, /* I - FITS file pointer */ int *status) /* IO - error status */ /* Create or update the checksum keywords in the CHDU. These keywords provide a checksum verification of the FITS HDU based on the ASCII coded 1's complement checksum algorithm developed by Rob Seaman at NOAO. */ { char datestr[20], checksum[FLEN_VALUE], datasum[FLEN_VALUE]; char comm[FLEN_COMMENT], chkcomm[FLEN_COMMENT], datacomm[FLEN_COMMENT]; int tstatus; long nrec; LONGLONG headstart, datastart, dataend; unsigned long dsum, olddsum, sum; double tdouble; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* generate current date string and construct the keyword comments */ ffgstm(datestr, NULL, status); strcpy(chkcomm, "HDU checksum updated "); strcat(chkcomm, datestr); strcpy(datacomm, "data unit checksum updated "); strcat(datacomm, datestr); /* write the CHECKSUM keyword if it does not exist */ tstatus = *status; if (ffgkys(fptr, "CHECKSUM", checksum, comm, status) == KEY_NO_EXIST) { *status = tstatus; strcpy(checksum, "0000000000000000"); ffpkys(fptr, "CHECKSUM", checksum, chkcomm, status); } /* write the DATASUM keyword if it does not exist */ tstatus = *status; if (ffgkys(fptr, "DATASUM", datasum, comm, status) == KEY_NO_EXIST) { *status = tstatus; olddsum = 0; ffpkys(fptr, "DATASUM", " 0", datacomm, status); /* set the CHECKSUM keyword as undefined, if it isn't already */ if (strcmp(checksum, "0000000000000000") ) { strcpy(checksum, "0000000000000000"); ffmkys(fptr, "CHECKSUM", checksum, chkcomm, status); } } else { /* decode the datasum into an unsigned long variable */ /* olddsum = strtoul(datasum, 0, 10); doesn't work on SUN OS */ tdouble = atof(datasum); olddsum = (unsigned long) tdouble; } /* close header: rewrite END keyword and following blank fill */ /* and re-read the required keywords to determine the structure */ if (ffrdef(fptr, status) > 0) return(*status); if ((fptr->Fptr)->heapsize > 0) ffuptf(fptr, status); /* update the variable length TFORM values */ /* write the correct data fill values, if they are not already correct */ if (ffpdfl(fptr, status) > 0) return(*status); /* calc size of data unit, in FITS 2880-byte blocks */ if (ffghadll(fptr, &headstart, &datastart, &dataend, status) > 0) return(*status); nrec = (long) ((dataend - datastart) / 2880); dsum = 0; if (nrec > 0) { /* accumulate the 32-bit 1's complement checksum */ ffmbyt(fptr, datastart, REPORT_EOF, status); if (ffcsum(fptr, nrec, &dsum, status) > 0) return(*status); } if (dsum != olddsum) { /* update the DATASUM keyword with the correct value */ sprintf(datasum, "%lu", dsum); ffmkys(fptr, "DATASUM", datasum, datacomm, status); /* set the CHECKSUM keyword as undefined, if it isn't already */ if (strcmp(checksum, "0000000000000000") ) { strcpy(checksum, "0000000000000000"); ffmkys(fptr, "CHECKSUM", checksum, chkcomm, status); } } if (strcmp(checksum, "0000000000000000") ) { /* check if CHECKSUM is still OK; move to the start of the header */ ffmbyt(fptr, headstart, REPORT_EOF, status); /* accumulate the header checksum into the previous data checksum */ nrec = (long) ((datastart - headstart) / 2880); sum = dsum; if (ffcsum(fptr, nrec, &sum, status) > 0) return(*status); if (sum == 0 || sum == 0xFFFFFFFF) return(*status); /* CHECKSUM is correct */ /* Zero the CHECKSUM and recompute the new value */ ffmkys(fptr, "CHECKSUM", "0000000000000000", chkcomm, status); } /* move to the start of the header */ ffmbyt(fptr, headstart, REPORT_EOF, status); /* accumulate the header checksum into the previous data checksum */ nrec = (long) ((datastart - headstart) / 2880); sum = dsum; if (ffcsum(fptr, nrec, &sum, status) > 0) return(*status); /* encode the COMPLEMENT of the checksum into a 16-character string */ ffesum(sum, TRUE, checksum); /* update the CHECKSUM keyword value with the new string */ ffmkys(fptr, "CHECKSUM", checksum, "&", status); return(*status); } /*------------------------------------------------------------------------*/ int ffupck(fitsfile *fptr, /* I - FITS file pointer */ int *status) /* IO - error status */ /* Update the CHECKSUM keyword value. This assumes that the DATASUM keyword exists and has the correct value. */ { char datestr[20], chkcomm[FLEN_COMMENT], comm[FLEN_COMMENT]; char checksum[FLEN_VALUE], datasum[FLEN_VALUE]; int tstatus; long nrec; LONGLONG headstart, datastart, dataend; unsigned long sum, dsum; double tdouble; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* generate current date string and construct the keyword comments */ ffgstm(datestr, NULL, status); strcpy(chkcomm, "HDU checksum updated "); strcat(chkcomm, datestr); /* get the DATASUM keyword and convert it to a unsigned long */ if (ffgkys(fptr, "DATASUM", datasum, comm, status) == KEY_NO_EXIST) { ffpmsg("DATASUM keyword not found (ffupck"); return(*status); } tdouble = atof(datasum); /* read as a double as a workaround */ dsum = (unsigned long) tdouble; /* get size of the HDU */ if (ffghadll(fptr, &headstart, &datastart, &dataend, status) > 0) return(*status); /* get the checksum keyword, if it exists */ tstatus = *status; if (ffgkys(fptr, "CHECKSUM", checksum, comm, status) == KEY_NO_EXIST) { *status = tstatus; strcpy(checksum, "0000000000000000"); ffpkys(fptr, "CHECKSUM", checksum, chkcomm, status); } else { /* check if CHECKSUM is still OK */ /* rewrite END keyword and following blank fill */ if (ffwend(fptr, status) > 0) return(*status); /* move to the start of the header */ ffmbyt(fptr, headstart, REPORT_EOF, status); /* accumulate the header checksum into the previous data checksum */ nrec = (long) ((datastart - headstart) / 2880); sum = dsum; if (ffcsum(fptr, nrec, &sum, status) > 0) return(*status); if (sum == 0 || sum == 0xFFFFFFFF) return(*status); /* CHECKSUM is already correct */ /* Zero the CHECKSUM and recompute the new value */ ffmkys(fptr, "CHECKSUM", "0000000000000000", chkcomm, status); } /* move to the start of the header */ ffmbyt(fptr, headstart, REPORT_EOF, status); /* accumulate the header checksum into the previous data checksum */ nrec = (long) ((datastart - headstart) / 2880); sum = dsum; if (ffcsum(fptr, nrec, &sum, status) > 0) return(*status); /* encode the COMPLEMENT of the checksum into a 16-character string */ ffesum(sum, TRUE, checksum); /* update the CHECKSUM keyword value with the new string */ ffmkys(fptr, "CHECKSUM", checksum, "&", status); return(*status); } /*------------------------------------------------------------------------*/ int ffvcks(fitsfile *fptr, /* I - FITS file pointer */ int *datastatus, /* O - data checksum status */ int *hdustatus, /* O - hdu checksum status */ /* 1 verification is correct */ /* 0 checksum keyword is not present */ /* -1 verification not correct */ int *status) /* IO - error status */ /* Verify the HDU by comparing the value of the computed checksums against the values of the DATASUM and CHECKSUM keywords if they are present. */ { int tstatus; double tdouble; unsigned long datasum, hdusum, olddatasum; char chksum[FLEN_VALUE], comm[FLEN_COMMENT]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); *datastatus = -1; *hdustatus = -1; tstatus = *status; if (ffgkys(fptr, "CHECKSUM", chksum, comm, status) == KEY_NO_EXIST) { *hdustatus = 0; /* CHECKSUM keyword does not exist */ *status = tstatus; } if (chksum[0] == '\0') *hdustatus = 0; /* all blank checksum means it is undefined */ if (ffgkys(fptr, "DATASUM", chksum, comm, status) == KEY_NO_EXIST) { *datastatus = 0; /* DATASUM keyword does not exist */ *status = tstatus; } if (chksum[0] == '\0') *datastatus = 0; /* all blank checksum means it is undefined */ if ( *status > 0 || (!(*hdustatus) && !(*datastatus)) ) return(*status); /* return if neither keywords exist */ /* convert string to unsigned long */ /* olddatasum = strtoul(chksum, 0, 10); doesn't work w/ gcc on SUN OS */ /* sscanf(chksum, "%u", &olddatasum); doesn't work w/ cc on VAX/VMS */ tdouble = atof(chksum); /* read as a double as a workaround */ olddatasum = (unsigned long) tdouble; /* calculate the data checksum and the HDU checksum */ if (ffgcks(fptr, &datasum, &hdusum, status) > 0) return(*status); if (*datastatus) if (datasum == olddatasum) *datastatus = 1; if (*hdustatus) if (hdusum == 0 || hdusum == 0xFFFFFFFF) *hdustatus = 1; return(*status); } /*------------------------------------------------------------------------*/ int ffgcks(fitsfile *fptr, /* I - FITS file pointer */ unsigned long *datasum, /* O - data checksum */ unsigned long *hdusum, /* O - hdu checksum */ int *status) /* IO - error status */ /* calculate the checksums of the data unit and the total HDU */ { long nrec; LONGLONG headstart, datastart, dataend; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* get size of the HDU */ if (ffghadll(fptr, &headstart, &datastart, &dataend, status) > 0) return(*status); nrec = (long) ((dataend - datastart) / 2880); *datasum = 0; if (nrec > 0) { /* accumulate the 32-bit 1's complement checksum */ ffmbyt(fptr, datastart, REPORT_EOF, status); if (ffcsum(fptr, nrec, datasum, status) > 0) return(*status); } /* move to the start of the header and calc. size of header */ ffmbyt(fptr, headstart, REPORT_EOF, status); nrec = (long) ((datastart - headstart) / 2880); /* accumulate the header checksum into the previous data checksum */ *hdusum = *datasum; ffcsum(fptr, nrec, hdusum, status); return(*status); } healpy-1.8.1/cfitsio/cfileio.c0000654000175000017530000072305112272000775016643 0ustar zoncaplanck00000000000000/* This file, cfileio.c, contains the low-level file access routines. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include #include #include #include /* apparently needed to define size_t */ #include "fitsio2.h" #include "group.h" #define MAX_PREFIX_LEN 20 /* max length of file type prefix (e.g. 'http://') */ #define MAX_DRIVERS 24 /* max number of file I/O drivers */ typedef struct /* structure containing pointers to I/O driver functions */ { char prefix[MAX_PREFIX_LEN]; int (*init)(void); int (*shutdown)(void); int (*setoptions)(int option); int (*getoptions)(int *options); int (*getversion)(int *version); int (*checkfile)(char *urltype, char *infile, char *outfile); int (*open)(char *filename, int rwmode, int *driverhandle); int (*create)(char *filename, int *drivehandle); int (*truncate)(int drivehandle, LONGLONG size); int (*close)(int drivehandle); int (*remove)(char *filename); int (*size)(int drivehandle, LONGLONG *size); int (*flush)(int drivehandle); int (*seek)(int drivehandle, LONGLONG offset); int (*read)(int drivehandle, void *buffer, long nbytes); int (*write)(int drivehandle, void *buffer, long nbytes); } fitsdriver; fitsdriver driverTable[MAX_DRIVERS]; /* allocate driver tables */ FITSfile *FptrTable[NMAXFILES]; /* this table of Fptr pointers is */ /* used by fits_already_open */ int need_to_initialize = 1; /* true if CFITSIO has not been initialized */ int no_of_drivers = 0; /* number of currently defined I/O drivers */ static int pixel_filter_helper(fitsfile **fptr, char *outfile, char *expr, int *status); static int find_quote(char **string); static int find_doublequote(char **string); static int find_paren(char **string); static int find_bracket(char **string); static int find_curlybracket(char **string); int comma2semicolon(char *string); #ifdef _REENTRANT pthread_mutex_t Fitsio_InitLock = PTHREAD_MUTEX_INITIALIZER; #endif /*--------------------------------------------------------------------------*/ int fitsio_init_lock(void) { static int need_to_init = 1; int status = 0; #ifdef _REENTRANT pthread_mutexattr_t mutex_init; FFLOCK1(Fitsio_InitLock); if (need_to_init) { /* Init the main fitsio lock here since we need a a recursive lock */ status = pthread_mutexattr_init(&mutex_init); if (status) { ffpmsg("pthread_mutexattr_init failed (fitsio_init_lock)"); return(status); } #ifdef linux status = pthread_mutexattr_settype(&mutex_init, PTHREAD_MUTEX_RECURSIVE_NP); #else status = pthread_mutexattr_settype(&mutex_init, PTHREAD_MUTEX_RECURSIVE); #endif if (status) { ffpmsg("pthread_mutexattr_settu[e failed (fitsio_init_lock)"); return(status); } status = pthread_mutex_init(&Fitsio_Lock,&mutex_init); if (status) { ffpmsg("pthread_mutex_init failed (fitsio_init_lock)"); return(status); } need_to_init = 0; } FFUNLOCK1(Fitsio_InitLock); #endif return(status); } /*--------------------------------------------------------------------------*/ int ffomem(fitsfile **fptr, /* O - FITS file pointer */ const char *name, /* I - name of file to open */ int mode, /* I - 0 = open readonly; 1 = read/write */ void **buffptr, /* I - address of memory pointer */ size_t *buffsize, /* I - size of buffer, in bytes */ size_t deltasize, /* I - increment for future realloc's */ void *(*mem_realloc)(void *p, size_t newsize), /* function */ int *status) /* IO - error status */ /* Open an existing FITS file in core memory. This is a specialized version of ffopen. */ { int ii, driver, handle, hdutyp, slen, movetotype, extvers, extnum; char extname[FLEN_VALUE]; LONGLONG filesize; char urltype[MAX_PREFIX_LEN], infile[FLEN_FILENAME], outfile[FLEN_FILENAME]; char extspec[FLEN_FILENAME], rowfilter[FLEN_FILENAME]; char binspec[FLEN_FILENAME], colspec[FLEN_FILENAME]; char imagecolname[FLEN_VALUE], rowexpress[FLEN_FILENAME]; char *url, errmsg[FLEN_ERRMSG]; char *hdtype[3] = {"IMAGE", "TABLE", "BINTABLE"}; if (*status > 0) return(*status); *fptr = 0; /* initialize null file pointer */ if (need_to_initialize) /* this is called only once */ { *status = fits_init_cfitsio(); if (*status > 0) return(*status); } url = (char *) name; while (*url == ' ') /* ignore leading spaces in the file spec */ url++; /* parse the input file specification */ fits_parse_input_url(url, urltype, infile, outfile, extspec, rowfilter, binspec, colspec, status); strcpy(urltype, "memkeep://"); /* URL type for pre-existing memory file */ *status = urltype2driver(urltype, &driver); if (*status > 0) { ffpmsg("could not find driver for pre-existing memory file: (ffomem)"); return(*status); } /* call driver routine to open the memory file */ FFLOCK; /* lock this while searching for vacant handle */ *status = mem_openmem( buffptr, buffsize,deltasize, mem_realloc, &handle); FFUNLOCK; if (*status > 0) { ffpmsg("failed to open pre-existing memory file: (ffomem)"); return(*status); } /* get initial file size */ *status = (*driverTable[driver].size)(handle, &filesize); if (*status > 0) { (*driverTable[driver].close)(handle); /* close the file */ ffpmsg("failed get the size of the memory file: (ffomem)"); return(*status); } /* allocate fitsfile structure and initialize = 0 */ *fptr = (fitsfile *) calloc(1, sizeof(fitsfile)); if (!(*fptr)) { (*driverTable[driver].close)(handle); /* close the file */ ffpmsg("failed to allocate structure for following file: (ffomem)"); ffpmsg(url); return(*status = MEMORY_ALLOCATION); } /* allocate FITSfile structure and initialize = 0 */ (*fptr)->Fptr = (FITSfile *) calloc(1, sizeof(FITSfile)); if (!((*fptr)->Fptr)) { (*driverTable[driver].close)(handle); /* close the file */ ffpmsg("failed to allocate structure for following file: (ffomem)"); ffpmsg(url); free(*fptr); *fptr = 0; return(*status = MEMORY_ALLOCATION); } slen = strlen(url) + 1; slen = maxvalue(slen, 32); /* reserve at least 32 chars */ ((*fptr)->Fptr)->filename = (char *) malloc(slen); /* mem for file name */ if ( !(((*fptr)->Fptr)->filename) ) { (*driverTable[driver].close)(handle); /* close the file */ ffpmsg("failed to allocate memory for filename: (ffomem)"); ffpmsg(url); free((*fptr)->Fptr); free(*fptr); *fptr = 0; /* return null file pointer */ return(*status = MEMORY_ALLOCATION); } /* mem for headstart array */ ((*fptr)->Fptr)->headstart = (LONGLONG *) calloc(1001, sizeof(LONGLONG)); if ( !(((*fptr)->Fptr)->headstart) ) { (*driverTable[driver].close)(handle); /* close the file */ ffpmsg("failed to allocate memory for headstart array: (ffomem)"); ffpmsg(url); free( ((*fptr)->Fptr)->filename); free((*fptr)->Fptr); free(*fptr); *fptr = 0; /* return null file pointer */ return(*status = MEMORY_ALLOCATION); } /* mem for file I/O buffers */ ((*fptr)->Fptr)->iobuffer = (char *) calloc(NIOBUF, IOBUFLEN); if ( !(((*fptr)->Fptr)->iobuffer) ) { (*driverTable[driver].close)(handle); /* close the file */ ffpmsg("failed to allocate memory for iobuffer array: (ffomem)"); ffpmsg(url); free( ((*fptr)->Fptr)->headstart); /* free memory for headstart array */ free( ((*fptr)->Fptr)->filename); free((*fptr)->Fptr); free(*fptr); *fptr = 0; /* return null file pointer */ return(*status = MEMORY_ALLOCATION); } /* initialize the ageindex array (relative age of the I/O buffers) */ /* and initialize the bufrecnum array as being empty */ for (ii = 0; ii < NIOBUF; ii++) { ((*fptr)->Fptr)->ageindex[ii] = ii; ((*fptr)->Fptr)->bufrecnum[ii] = -1; } /* store the parameters describing the file */ ((*fptr)->Fptr)->MAXHDU = 1000; /* initial size of headstart */ ((*fptr)->Fptr)->filehandle = handle; /* file handle */ ((*fptr)->Fptr)->driver = driver; /* driver number */ strcpy(((*fptr)->Fptr)->filename, url); /* full input filename */ ((*fptr)->Fptr)->filesize = filesize; /* physical file size */ ((*fptr)->Fptr)->logfilesize = filesize; /* logical file size */ ((*fptr)->Fptr)->writemode = mode; /* read-write mode */ ((*fptr)->Fptr)->datastart = DATA_UNDEFINED; /* unknown start of data */ ((*fptr)->Fptr)->curbuf = -1; /* undefined current IO buffer */ ((*fptr)->Fptr)->open_count = 1; /* structure is currently used once */ ((*fptr)->Fptr)->validcode = VALIDSTRUC; /* flag denoting valid structure */ ffldrc(*fptr, 0, REPORT_EOF, status); /* load first record */ fits_store_Fptr( (*fptr)->Fptr, status); /* store Fptr address */ if (ffrhdu(*fptr, &hdutyp, status) > 0) /* determine HDU structure */ { ffpmsg( "ffomem could not interpret primary array header of file: (ffomem)"); ffpmsg(url); if (*status == UNKNOWN_REC) ffpmsg("This does not look like a FITS file."); ffclos(*fptr, status); *fptr = 0; /* return null file pointer */ } /* ---------------------------------------------------------- */ /* move to desired extension, if specified as part of the URL */ /* ---------------------------------------------------------- */ imagecolname[0] = '\0'; rowexpress[0] = '\0'; if (*extspec) { /* parse the extension specifier into individual parameters */ ffexts(extspec, &extnum, extname, &extvers, &movetotype, imagecolname, rowexpress, status); if (*status > 0) return(*status); if (extnum) { ffmahd(*fptr, extnum + 1, &hdutyp, status); } else if (*extname) /* move to named extension, if specified */ { ffmnhd(*fptr, movetotype, extname, extvers, status); } if (*status > 0) { ffpmsg("ffomem could not move to the specified extension:"); if (extnum > 0) { sprintf(errmsg, " extension number %d doesn't exist or couldn't be opened.",extnum); ffpmsg(errmsg); } else { sprintf(errmsg, " extension with EXTNAME = %s,", extname); ffpmsg(errmsg); if (extvers) { sprintf(errmsg, " and with EXTVERS = %d,", extvers); ffpmsg(errmsg); } if (movetotype != ANY_HDU) { sprintf(errmsg, " and with XTENSION = %s,", hdtype[movetotype]); ffpmsg(errmsg); } ffpmsg(" doesn't exist or couldn't be opened."); } return(*status); } } return(*status); } /*--------------------------------------------------------------------------*/ int ffdkopn(fitsfile **fptr, /* O - FITS file pointer */ const char *name, /* I - full name of file to open */ int mode, /* I - 0 = open readonly; 1 = read/write */ int *status) /* IO - error status */ /* Open an existing FITS file on magnetic disk with either readonly or read/write access. The routine does not support CFITSIO's extended filename syntax and simply uses the entire input 'name' string as the name of the file. */ { if (*status > 0) return(*status); *status = OPEN_DISK_FILE; ffopen(fptr, name, mode, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffdopn(fitsfile **fptr, /* O - FITS file pointer */ const char *name, /* I - full name of file to open */ int mode, /* I - 0 = open readonly; 1 = read/write */ int *status) /* IO - error status */ /* Open an existing FITS file with either readonly or read/write access. and move to the first HDU that contains 'interesting' data, if the primary array contains a null image (i.e., NAXIS = 0). */ { if (*status > 0) return(*status); *status = SKIP_NULL_PRIMARY; ffopen(fptr, name, mode, status); return(*status); } /*--------------------------------------------------------------------------*/ int fftopn(fitsfile **fptr, /* O - FITS file pointer */ const char *name, /* I - full name of file to open */ int mode, /* I - 0 = open readonly; 1 = read/write */ int *status) /* IO - error status */ /* Open an existing FITS file with either readonly or read/write access. and move to the first HDU that contains 'interesting' table (not an image). */ { int hdutype; if (*status > 0) return(*status); *status = SKIP_IMAGE; ffopen(fptr, name, mode, status); if (ffghdt(*fptr, &hdutype, status) <= 0) { if (hdutype == IMAGE_HDU) *status = NOT_TABLE; } return(*status); } /*--------------------------------------------------------------------------*/ int ffiopn(fitsfile **fptr, /* O - FITS file pointer */ const char *name, /* I - full name of file to open */ int mode, /* I - 0 = open readonly; 1 = read/write */ int *status) /* IO - error status */ /* Open an existing FITS file with either readonly or read/write access. and move to the first HDU that contains 'interesting' image (not an table). */ { int hdutype; if (*status > 0) return(*status); *status = SKIP_TABLE; ffopen(fptr, name, mode, status); if (ffghdt(*fptr, &hdutype, status) <= 0) { if (hdutype != IMAGE_HDU) *status = NOT_IMAGE; } return(*status); } /*--------------------------------------------------------------------------*/ int ffopentest(int soname, /* I - CFITSIO shared library version */ /* application program (fitsio.h file) */ fitsfile **fptr, /* O - FITS file pointer */ const char *name, /* I - full name of file to open */ int mode, /* I - 0 = open readonly; 1 = read/write */ int *status) /* IO - error status */ /* Open an existing FITS file with either readonly or read/write access. First test that the SONAME of fitsio.h used to build the CFITSIO library is the same as was used in compiling the application program that links to the library. */ { if (soname != CFITSIO_SONAME) { printf("\nERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file\n"); printf("that was used to build the CFITSIO library, and the value in the include file\n"); printf("that was used when compiling the application program:\n"); printf(" Version used to build the CFITSIO library = %d\n",CFITSIO_SONAME); printf(" Version included by the application program = %d\n",soname); printf("\nFix this by recompiling and then relinking this application program \n"); printf("with the CFITSIO library.\n"); *status = FILE_NOT_OPENED; return(*status); } /* now call the normal file open routine */ ffopen(fptr, name, mode, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffopen(fitsfile **fptr, /* O - FITS file pointer */ const char *name, /* I - full name of file to open */ int mode, /* I - 0 = open readonly; 1 = read/write */ int *status) /* IO - error status */ /* Open an existing FITS file with either readonly or read/write access. */ { fitsfile *newptr; int ii, driver, hdutyp, hdunum, slen, writecopy, isopen; LONGLONG filesize; long rownum, nrows, goodrows; int extnum, extvers, handle, movetotype, tstatus = 0, only_one = 0; char urltype[MAX_PREFIX_LEN], infile[FLEN_FILENAME], outfile[FLEN_FILENAME]; char origurltype[MAX_PREFIX_LEN], extspec[FLEN_FILENAME]; char extname[FLEN_VALUE], rowfilter[FLEN_FILENAME], tblname[FLEN_VALUE]; char imagecolname[FLEN_VALUE], rowexpress[FLEN_FILENAME]; char binspec[FLEN_FILENAME], colspec[FLEN_FILENAME], pixfilter[FLEN_FILENAME]; char histfilename[FLEN_FILENAME]; char filtfilename[FLEN_FILENAME], compspec[FLEN_FILENAME]; char wtcol[FLEN_VALUE]; char minname[4][FLEN_VALUE], maxname[4][FLEN_VALUE]; char binname[4][FLEN_VALUE]; char *url; double minin[4], maxin[4], binsizein[4], weight; int imagetype, naxis = 1, haxis, recip; int skip_null = 0, skip_image = 0, skip_table = 0, open_disk_file = 0; char colname[4][FLEN_VALUE]; char errmsg[FLEN_ERRMSG]; char *hdtype[3] = {"IMAGE", "TABLE", "BINTABLE"}; char *rowselect = 0; if (*status > 0) return(*status); if (*status == SKIP_NULL_PRIMARY) { /* this special status value is used as a flag by ffdopn to tell */ /* ffopen to skip over a null primary array when opening the file. */ skip_null = 1; *status = 0; } else if (*status == SKIP_IMAGE) { /* this special status value is used as a flag by fftopn to tell */ /* ffopen to move to 1st significant table when opening the file. */ skip_image = 1; *status = 0; } else if (*status == SKIP_TABLE) { /* this special status value is used as a flag by ffiopn to tell */ /* ffopen to move to 1st significant image when opening the file. */ skip_table = 1; *status = 0; } else if (*status == OPEN_DISK_FILE) { /* this special status value is used as a flag by ffdkopn to tell */ /* ffopen to not interpret the input filename using CFITSIO's */ /* extended filename syntax, and simply open the specified disk file */ open_disk_file = 1; *status = 0; } *fptr = 0; /* initialize null file pointer */ writecopy = 0; /* have we made a write-able copy of the input file? */ if (need_to_initialize) { /* this is called only once */ *status = fits_init_cfitsio(); } if (*status > 0) return(*status); url = (char *) name; while (*url == ' ') /* ignore leading spaces in the filename */ url++; if (*url == '\0') { ffpmsg("Name of file to open is blank. (ffopen)"); return(*status = FILE_NOT_OPENED); } if (open_disk_file) { /* treat the input URL literally as the name of the file to open */ /* and don't try to parse the URL using the extended filename syntax */ if (strlen(url) > FLEN_FILENAME - 1) { ffpmsg("Name of file to open is too long. (ffopen)"); return(*status = FILE_NOT_OPENED); } strcpy(infile,url); strcpy(urltype, "file://"); outfile[0] = '\0'; extspec[0] = '\0'; binspec[0] = '\0'; colspec[0] = '\0'; rowfilter[0] = '\0'; pixfilter[0] = '\0'; compspec[0] = '\0'; } else { /* parse the input file specification */ /* NOTE: This routine tests that all the strings do not */ /* overflow the standard buffer sizes (FLEN_FILENAME, etc.) */ /* therefore in general we do not have to worry about buffer */ /* overflow of any of the returned strings. */ /* call the newer version of this parsing routine that supports 'compspec' */ ffifile2(url, urltype, infile, outfile, extspec, rowfilter, binspec, colspec, pixfilter, compspec, status); } if (*status > 0) { ffpmsg("could not parse the input filename: (ffopen)"); ffpmsg(url); return(*status); } imagecolname[0] = '\0'; rowexpress[0] = '\0'; if (*extspec) { slen = strlen(extspec); if (extspec[slen - 1] == '#') { /* special symbol to mean only copy this extension */ extspec[slen - 1] = '\0'; only_one = 1; } /* parse the extension specifier into individual parameters */ ffexts(extspec, &extnum, extname, &extvers, &movetotype, imagecolname, rowexpress, status); if (*status > 0) return(*status); } /*-------------------------------------------------------------------*/ /* special cases: */ /*-------------------------------------------------------------------*/ histfilename[0] = '\0'; filtfilename[0] = '\0'; if (*outfile && (*binspec || *imagecolname || *pixfilter)) { /* if binspec or imagecolumn are specified, then the */ /* output file name is intended for the final image, */ /* and not a copy of the input file. */ strcpy(histfilename, outfile); outfile[0] = '\0'; } else if (*outfile && (*rowfilter || *colspec)) { /* if rowfilter or colspece are specified, then the */ /* output file name is intended for the filtered file */ /* and not a copy of the input file. */ strcpy(filtfilename, outfile); outfile[0] = '\0'; } /*-------------------------------------------------------------------*/ /* check if this same file is already open, and if so, attach to it */ /*-------------------------------------------------------------------*/ FFLOCK; if (fits_already_open(fptr, url, urltype, infile, extspec, rowfilter, binspec, colspec, mode, &isopen, status) > 0) { FFUNLOCK; return(*status); } FFUNLOCK; if (isopen) { goto move2hdu; } /* get the driver number corresponding to this urltype */ *status = urltype2driver(urltype, &driver); if (*status > 0) { ffpmsg("could not find driver for this file: (ffopen)"); ffpmsg(urltype); ffpmsg(url); return(*status); } /*------------------------------------------------------------------- deal with all those messy special cases which may require that a different driver be used: - is disk file compressed? - are ftp:, gsiftp:, or http: files compressed? - has user requested that a local copy be made of the ftp or http file? -------------------------------------------------------------------*/ if (driverTable[driver].checkfile) { strcpy(origurltype,urltype); /* Save the urltype */ /* 'checkfile' may modify the urltype, infile and outfile strings */ *status = (*driverTable[driver].checkfile)(urltype, infile, outfile); if (*status) { ffpmsg("checkfile failed for this file: (ffopen)"); ffpmsg(url); return(*status); } if (strcmp(origurltype, urltype)) /* did driver changed on us? */ { *status = urltype2driver(urltype, &driver); if (*status > 0) { ffpmsg("could not change driver for this file: (ffopen)"); ffpmsg(url); ffpmsg(urltype); return(*status); } } } /* call appropriate driver to open the file */ if (driverTable[driver].open) { FFLOCK; /* lock this while searching for vacant handle */ *status = (*driverTable[driver].open)(infile, mode, &handle); FFUNLOCK; if (*status > 0) { ffpmsg("failed to find or open the following file: (ffopen)"); ffpmsg(url); return(*status); } } else { ffpmsg("cannot open an existing file of this type: (ffopen)"); ffpmsg(url); return(*status = FILE_NOT_OPENED); } /* get initial file size */ *status = (*driverTable[driver].size)(handle, &filesize); if (*status > 0) { (*driverTable[driver].close)(handle); /* close the file */ ffpmsg("failed get the size of the following file: (ffopen)"); ffpmsg(url); return(*status); } /* allocate fitsfile structure and initialize = 0 */ *fptr = (fitsfile *) calloc(1, sizeof(fitsfile)); if (!(*fptr)) { (*driverTable[driver].close)(handle); /* close the file */ ffpmsg("failed to allocate structure for following file: (ffopen)"); ffpmsg(url); return(*status = MEMORY_ALLOCATION); } /* allocate FITSfile structure and initialize = 0 */ (*fptr)->Fptr = (FITSfile *) calloc(1, sizeof(FITSfile)); if (!((*fptr)->Fptr)) { (*driverTable[driver].close)(handle); /* close the file */ ffpmsg("failed to allocate structure for following file: (ffopen)"); ffpmsg(url); free(*fptr); *fptr = 0; return(*status = MEMORY_ALLOCATION); } slen = strlen(url) + 1; slen = maxvalue(slen, 32); /* reserve at least 32 chars */ ((*fptr)->Fptr)->filename = (char *) malloc(slen); /* mem for file name */ if ( !(((*fptr)->Fptr)->filename) ) { (*driverTable[driver].close)(handle); /* close the file */ ffpmsg("failed to allocate memory for filename: (ffopen)"); ffpmsg(url); free((*fptr)->Fptr); free(*fptr); *fptr = 0; /* return null file pointer */ return(*status = MEMORY_ALLOCATION); } /* mem for headstart array */ ((*fptr)->Fptr)->headstart = (LONGLONG *) calloc(1001, sizeof(LONGLONG)); if ( !(((*fptr)->Fptr)->headstart) ) { (*driverTable[driver].close)(handle); /* close the file */ ffpmsg("failed to allocate memory for headstart array: (ffopen)"); ffpmsg(url); free( ((*fptr)->Fptr)->filename); free((*fptr)->Fptr); free(*fptr); *fptr = 0; /* return null file pointer */ return(*status = MEMORY_ALLOCATION); } /* mem for file I/O buffers */ ((*fptr)->Fptr)->iobuffer = (char *) calloc(NIOBUF, IOBUFLEN); if ( !(((*fptr)->Fptr)->iobuffer) ) { (*driverTable[driver].close)(handle); /* close the file */ ffpmsg("failed to allocate memory for iobuffer array: (ffopen)"); ffpmsg(url); free( ((*fptr)->Fptr)->headstart); /* free memory for headstart array */ free( ((*fptr)->Fptr)->filename); free((*fptr)->Fptr); free(*fptr); *fptr = 0; /* return null file pointer */ return(*status = MEMORY_ALLOCATION); } /* initialize the ageindex array (relative age of the I/O buffers) */ /* and initialize the bufrecnum array as being empty */ for (ii = 0; ii < NIOBUF; ii++) { ((*fptr)->Fptr)->ageindex[ii] = ii; ((*fptr)->Fptr)->bufrecnum[ii] = -1; } /* store the parameters describing the file */ ((*fptr)->Fptr)->MAXHDU = 1000; /* initial size of headstart */ ((*fptr)->Fptr)->filehandle = handle; /* file handle */ ((*fptr)->Fptr)->driver = driver; /* driver number */ strcpy(((*fptr)->Fptr)->filename, url); /* full input filename */ ((*fptr)->Fptr)->filesize = filesize; /* physical file size */ ((*fptr)->Fptr)->logfilesize = filesize; /* logical file size */ ((*fptr)->Fptr)->writemode = mode; /* read-write mode */ ((*fptr)->Fptr)->datastart = DATA_UNDEFINED; /* unknown start of data */ ((*fptr)->Fptr)->curbuf = -1; /* undefined current IO buffer */ ((*fptr)->Fptr)->open_count = 1; /* structure is currently used once */ ((*fptr)->Fptr)->validcode = VALIDSTRUC; /* flag denoting valid structure */ ((*fptr)->Fptr)->only_one = only_one; /* flag denoting only copy single extension */ ffldrc(*fptr, 0, REPORT_EOF, status); /* load first record */ fits_store_Fptr( (*fptr)->Fptr, status); /* store Fptr address */ if (ffrhdu(*fptr, &hdutyp, status) > 0) /* determine HDU structure */ { ffpmsg( "ffopen could not interpret primary array header of file: "); ffpmsg(url); if (*status == UNKNOWN_REC) ffpmsg("This does not look like a FITS file."); ffclos(*fptr, status); *fptr = 0; /* return null file pointer */ return(*status); } /* ------------------------------------------------------------- */ /* At this point, the input file has been opened. If outfile was */ /* specified, then we have opened a copy of the file, not the */ /* original file so it is safe to modify it if necessary */ /* ------------------------------------------------------------- */ if (*outfile) writecopy = 1; move2hdu: /* ---------------------------------------------------------- */ /* move to desired extension, if specified as part of the URL */ /* ---------------------------------------------------------- */ if (*extspec) { if (extnum) /* extension number was specified */ { ffmahd(*fptr, extnum + 1, &hdutyp, status); } else if (*extname) /* move to named extension, if specified */ { ffmnhd(*fptr, movetotype, extname, extvers, status); } if (*status > 0) /* clean up after error */ { ffpmsg("ffopen could not move to the specified extension:"); if (extnum > 0) { sprintf(errmsg, " extension number %d doesn't exist or couldn't be opened.",extnum); ffpmsg(errmsg); } else { sprintf(errmsg, " extension with EXTNAME = %s,", extname); ffpmsg(errmsg); if (extvers) { sprintf(errmsg, " and with EXTVERS = %d,", extvers); ffpmsg(errmsg); } if (movetotype != ANY_HDU) { sprintf(errmsg, " and with XTENSION = %s,", hdtype[movetotype]); ffpmsg(errmsg); } ffpmsg(" doesn't exist or couldn't be opened."); } ffclos(*fptr, status); *fptr = 0; /* return null file pointer */ return(*status); } } else if (skip_null || skip_image || skip_table || (*imagecolname || *colspec || *rowfilter || *binspec)) { /* ------------------------------------------------------------------ If no explicit extension specifier is given as part of the file name, and, if a) skip_null is true (set if ffopen is called by ffdopn) or b) skip_image or skip_table is true (set if ffopen is called by fftopn or ffdopn) or c) other file filters are specified, then CFITSIO will attempt to move to the first 'interesting' HDU after opening an existing FITS file (or to first interesting table HDU if skip_image is true); An 'interesting' HDU is defined to be either an image with NAXIS > 0 (i.e., not a null array) or a table which has an EXTNAME value which does not contain any of the following strings: 'GTI' - Good Time Interval extension 'OBSTABLE' - used in Beppo SAX data files The main purpose for this is to allow CFITSIO to skip over a null primary and other non-interesting HDUs when opening an existing file, and move directly to the first extension that contains significant data. ------------------------------------------------------------------ */ fits_get_hdu_num(*fptr, &hdunum); if (hdunum == 1) { fits_get_img_dim(*fptr, &naxis, status); if (naxis == 0 || skip_image) /* skip primary array */ { while(1) { /* see if the next HDU is 'interesting' */ if (fits_movrel_hdu(*fptr, 1, &hdutyp, status)) { if (*status == END_OF_FILE) *status = 0; /* reset expected error */ /* didn't find an interesting HDU so move back to beginning */ fits_movabs_hdu(*fptr, 1, &hdutyp, status); break; } if (hdutyp == IMAGE_HDU && skip_image) { continue; /* skip images */ } else if (hdutyp != IMAGE_HDU && skip_table) { continue; /* skip tables */ } else if (hdutyp == IMAGE_HDU) { fits_get_img_dim(*fptr, &naxis, status); if (naxis > 0) break; /* found a non-null image */ } else { tstatus = 0; tblname[0] = '\0'; fits_read_key(*fptr, TSTRING, "EXTNAME", tblname, NULL,&tstatus); if ( (!strstr(tblname, "GTI") && !strstr(tblname, "gti")) && strncasecmp(tblname, "OBSTABLE", 8) ) break; /* found an interesting table */ } } /* end while */ } } /* end if (hdunum==1) */ } if (*imagecolname) { /* ----------------------------------------------------------------- */ /* we need to open an image contained in a single table cell */ /* First, determine which row of the table to use. */ /* ----------------------------------------------------------------- */ if (isdigit((int) *rowexpress)) /* is the row specification a number? */ { sscanf(rowexpress, "%ld", &rownum); if (rownum < 1) { ffpmsg("illegal rownum for image cell:"); ffpmsg(rowexpress); ffpmsg("Could not open the following image in a table cell:"); ffpmsg(extspec); ffclos(*fptr, status); *fptr = 0; /* return null file pointer */ return(*status = BAD_ROW_NUM); } } else if (fits_find_first_row(*fptr, rowexpress, &rownum, status) > 0) { ffpmsg("Failed to find row matching this expression:"); ffpmsg(rowexpress); ffpmsg("Could not open the following image in a table cell:"); ffpmsg(extspec); ffclos(*fptr, status); *fptr = 0; /* return null file pointer */ return(*status); } if (rownum == 0) { ffpmsg("row statisfying this expression doesn't exist::"); ffpmsg(rowexpress); ffpmsg("Could not open the following image in a table cell:"); ffpmsg(extspec); ffclos(*fptr, status); *fptr = 0; /* return null file pointer */ return(*status = BAD_ROW_NUM); } /* determine the name of the new file to contain copy of the image */ if (*histfilename && !(*pixfilter) ) strcpy(outfile, histfilename); /* the original outfile name */ else strcpy(outfile, "mem://_1"); /* create image file in memory */ /* Copy the image into new primary array and open it as the current */ /* fptr. This will close the table that contains the original image. */ /* create new empty file to hold copy of the image */ if (ffinit(&newptr, outfile, status) > 0) { ffpmsg("failed to create file for copy of image in table cell:"); ffpmsg(outfile); return(*status); } if (fits_copy_cell2image(*fptr, newptr, imagecolname, rownum, status) > 0) { ffpmsg("Failed to copy table cell to new primary array:"); ffpmsg(extspec); ffclos(*fptr, status); *fptr = 0; /* return null file pointer */ return(*status); } /* close the original file and set fptr to the new image */ ffclos(*fptr, status); *fptr = newptr; /* reset the pointer to the new table */ writecopy = 1; /* we are now dealing with a copy of the original file */ /* add some HISTORY; fits_copy_image_cell also wrote HISTORY keywords */ /* disable this; leave it up to calling routine to write any HISTORY keywords if (*extname) sprintf(card,"HISTORY in HDU '%.16s' of file '%.36s'",extname,infile); else sprintf(card,"HISTORY in HDU %d of file '%.45s'", extnum, infile); ffprec(*fptr, card, status); */ } /* --------------------------------------------------------------------- */ /* edit columns (and/or keywords) in the table, if specified in the URL */ /* --------------------------------------------------------------------- */ if (*colspec) { /* the column specifier will modify the file, so make sure */ /* we are already dealing with a copy, or else make a new copy */ if (!writecopy) /* Is the current file already a copy? */ writecopy = fits_is_this_a_copy(urltype); if (!writecopy) { if (*filtfilename && *outfile == '\0') strcpy(outfile, filtfilename); /* the original outfile name */ else strcpy(outfile, "mem://_1"); /* will create copy in memory */ writecopy = 1; } else { ((*fptr)->Fptr)->writemode = READWRITE; /* we have write access */ outfile[0] = '\0'; } if (ffedit_columns(fptr, outfile, colspec, status) > 0) { ffpmsg("editing columns in input table failed (ffopen)"); ffpmsg(" while trying to perform the following operation:"); ffpmsg(colspec); ffclos(*fptr, status); *fptr = 0; /* return null file pointer */ return(*status); } } /* ------------------------------------------------------------------- */ /* select rows from the table, if specified in the URL */ /* or select a subimage (if this is an image HDU and not a table) */ /* ------------------------------------------------------------------- */ if (*rowfilter) { fits_get_hdu_type(*fptr, &hdutyp, status); /* get type of HDU */ if (hdutyp == IMAGE_HDU) { /* this is an image so 'rowfilter' is an image section specification */ if (*filtfilename && *outfile == '\0') strcpy(outfile, filtfilename); /* the original outfile name */ else if (*outfile == '\0') /* output file name not already defined? */ strcpy(outfile, "mem://_2"); /* will create file in memory */ /* create new file containing the image section, plus a copy of */ /* any other HDUs that exist in the input file. This routine */ /* will close the original image file and return a pointer */ /* to the new file. */ if (fits_select_image_section(fptr, outfile, rowfilter, status) > 0) { ffpmsg("on-the-fly selection of image section failed (ffopen)"); ffpmsg(" while trying to use the following section filter:"); ffpmsg(rowfilter); ffclos(*fptr, status); *fptr = 0; /* return null file pointer */ return(*status); } } else { /* this is a table HDU, so the rowfilter is really a row filter */ if (*binspec) { /* since we are going to make a histogram of the selected rows, */ /* it would be a waste of time and memory to make a whole copy of */ /* the selected rows. Instead, just construct an array of TRUE */ /* or FALSE values that indicate which rows are to be included */ /* in the histogram and pass that to the histogram generating */ /* routine */ fits_get_num_rows(*fptr, &nrows, status); /* get no. of rows */ rowselect = (char *) calloc(nrows, 1); if (!rowselect) { ffpmsg( "failed to allocate memory for selected columns array (ffopen)"); ffpmsg(" while trying to select rows with the following filter:"); ffpmsg(rowfilter); ffclos(*fptr, status); *fptr = 0; /* return null file pointer */ return(*status = MEMORY_ALLOCATION); } if (fits_find_rows(*fptr, rowfilter, 1L, nrows, &goodrows, rowselect, status) > 0) { ffpmsg("selection of rows in input table failed (ffopen)"); ffpmsg(" while trying to select rows with the following filter:"); ffpmsg(rowfilter); free(rowselect); ffclos(*fptr, status); *fptr = 0; /* return null file pointer */ return(*status); } } else { if (!writecopy) /* Is the current file already a copy? */ writecopy = fits_is_this_a_copy(urltype); if (!writecopy) { if (*filtfilename && *outfile == '\0') strcpy(outfile, filtfilename); /* the original outfile name */ else if (*outfile == '\0') /* output filename not already defined? */ strcpy(outfile, "mem://_2"); /* will create copy in memory */ } else { ((*fptr)->Fptr)->writemode = READWRITE; /* we have write access */ outfile[0] = '\0'; } /* select rows in the table. If a copy of the input file has */ /* not already been made, then this routine will make a copy */ /* and then close the input file, so that the modifications will */ /* only be made on the copy, not the original */ if (ffselect_table(fptr, outfile, rowfilter, status) > 0) { ffpmsg("on-the-fly selection of rows in input table failed (ffopen)"); ffpmsg(" while trying to select rows with the following filter:"); ffpmsg(rowfilter); ffclos(*fptr, status); *fptr = 0; /* return null file pointer */ return(*status); } /* write history records */ ffphis(*fptr, "CFITSIO used the following filtering expression to create this table:", status); ffphis(*fptr, name, status); } /* end of no binspec case */ } /* end of table HDU case */ } /* end of rowfilter exists case */ /* ------------------------------------------------------------------- */ /* make an image histogram by binning columns, if specified in the URL */ /* ------------------------------------------------------------------- */ if (*binspec) { if (*histfilename && !(*pixfilter) ) strcpy(outfile, histfilename); /* the original outfile name */ else strcpy(outfile, "mem://_3"); /* create histogram in memory */ /* if not already copied the file */ /* parse the binning specifier into individual parameters */ ffbins(binspec, &imagetype, &haxis, colname, minin, maxin, binsizein, minname, maxname, binname, &weight, wtcol, &recip, status); /* Create the histogram primary array and open it as the current fptr */ /* This will close the table that was used to create the histogram. */ ffhist2(fptr, outfile, imagetype, haxis, colname, minin, maxin, binsizein, minname, maxname, binname, weight, wtcol, recip, rowselect, status); if (rowselect) free(rowselect); if (*status > 0) { ffpmsg("on-the-fly histogramming of input table failed (ffopen)"); ffpmsg(" while trying to execute the following histogram specification:"); ffpmsg(binspec); ffclos(*fptr, status); *fptr = 0; /* return null file pointer */ return(*status); } /* write history records */ ffphis(*fptr, "CFITSIO used the following expression to create this histogram:", status); ffphis(*fptr, name, status); } if (*pixfilter) { if (*histfilename) strcpy(outfile, histfilename); /* the original outfile name */ else strcpy(outfile, "mem://_4"); /* create in memory */ /* if not already copied the file */ /* Ensure type of HDU is consistent with pixel filtering */ fits_get_hdu_type(*fptr, &hdutyp, status); /* get type of HDU */ if (hdutyp == IMAGE_HDU) { pixel_filter_helper(fptr, outfile, pixfilter, status); if (*status > 0) { ffpmsg("pixel filtering of input image failed (ffopen)"); ffpmsg(" while trying to execute the following:"); ffpmsg(pixfilter); ffclos(*fptr, status); *fptr = 0; /* return null file pointer */ return(*status); } /* write history records */ ffphis(*fptr, "CFITSIO used the following expression to create this image:", status); ffphis(*fptr, name, status); } else { ffpmsg("cannot use pixel filter on non-IMAGE HDU"); ffpmsg(pixfilter); ffclos(*fptr, status); *fptr = 0; /* return null file pointer */ *status = NOT_IMAGE; return(*status); } } /* parse and save image compression specification, if given */ if (*compspec) { ffparsecompspec(*fptr, compspec, status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffreopen(fitsfile *openfptr, /* I - FITS file pointer to open file */ fitsfile **newfptr, /* O - pointer to new re opened file */ int *status) /* IO - error status */ /* Reopen an existing FITS file with either readonly or read/write access. The reopened file shares the same FITSfile structure but may point to a different HDU within the file. */ { if (*status > 0) return(*status); /* check that the open file pointer is valid */ if (!openfptr) return(*status = NULL_INPUT_PTR); else if ((openfptr->Fptr)->validcode != VALIDSTRUC) /* check magic value */ return(*status = BAD_FILEPTR); /* allocate fitsfile structure and initialize = 0 */ *newfptr = (fitsfile *) calloc(1, sizeof(fitsfile)); (*newfptr)->Fptr = openfptr->Fptr; /* both point to the same structure */ (*newfptr)->HDUposition = 0; /* set initial position to primary array */ (((*newfptr)->Fptr)->open_count)++; /* increment the file usage counter */ return(*status); } /*--------------------------------------------------------------------------*/ int fits_store_Fptr(FITSfile *Fptr, /* O - FITS file pointer */ int *status) /* IO - error status */ /* store the new Fptr address for future use by fits_already_open */ { int ii; if (*status > 0) return(*status); FFLOCK; for (ii = 0; ii < NMAXFILES; ii++) { if (FptrTable[ii] == 0) { FptrTable[ii] = Fptr; break; } } FFUNLOCK; return(*status); } /*--------------------------------------------------------------------------*/ int fits_clear_Fptr(FITSfile *Fptr, /* O - FITS file pointer */ int *status) /* IO - error status */ /* clear the Fptr address from the Fptr Table */ { int ii; FFLOCK; for (ii = 0; ii < NMAXFILES; ii++) { if (FptrTable[ii] == Fptr) { FptrTable[ii] = 0; break; } } FFUNLOCK; return(*status); } /*--------------------------------------------------------------------------*/ int fits_already_open(fitsfile **fptr, /* I/O - FITS file pointer */ char *url, char *urltype, char *infile, char *extspec, char *rowfilter, char *binspec, char *colspec, int mode, /* I - 0 = open readonly; 1 = read/write */ int *isopen, /* O - 1 = file is already open */ int *status) /* IO - error status */ /* Check if the file to be opened is already open. If so, then attach to it. */ /* the input strings must not exceed the standard lengths */ /* of FLEN_FILENAME, MAX_PREFIX_LEN, etc. */ /* this function was changed so that for files of access method FILE:// the file paths are compared using standard URL syntax and absolute paths (as opposed to relative paths). This eliminates some instances where a file is already opened but it is not realized because it was opened with another file path. For instance, if the CWD is /a/b/c and I open /a/b/c/foo.fits then open ./foo.fits the previous version of this function would not have reconized that the two files were the same. This version does recognize that the two files are the same. */ { FITSfile *oldFptr; int ii; char oldurltype[MAX_PREFIX_LEN], oldinfile[FLEN_FILENAME]; char oldextspec[FLEN_FILENAME], oldoutfile[FLEN_FILENAME]; char oldrowfilter[FLEN_FILENAME]; char oldbinspec[FLEN_FILENAME], oldcolspec[FLEN_FILENAME]; char cwd[FLEN_FILENAME]; char tmpStr[FLEN_FILENAME]; char tmpinfile[FLEN_FILENAME]; *isopen = 0; /* When opening a file with readonly access then we simply let the operating system open the file again, instead of using the CFITSIO trick of attaching to the previously opened file. This is required if CFITSIO is running in a multi-threaded environment, because 2 different threads cannot share the same FITSfile pointer. If the file is opened/reopened with write access, then the file MUST only be physically opened once.. */ if (mode == 0) return(*status); if(strcasecmp(urltype,"FILE://") == 0) { fits_path2url(infile,tmpinfile,status); if(tmpinfile[0] != '/') { fits_get_cwd(cwd,status); strcat(cwd,"/"); if (strlen(cwd) + strlen(tmpinfile) > FLEN_FILENAME-1) { ffpmsg("File name is too long. (fits_already_open)"); return(*status = FILE_NOT_OPENED); } strcat(cwd,tmpinfile); fits_clean_url(cwd,tmpinfile,status); } } else strcpy(tmpinfile,infile); for (ii = 0; ii < NMAXFILES; ii++) /* check every buffer */ { if (FptrTable[ii] != 0) { oldFptr = FptrTable[ii]; fits_parse_input_url(oldFptr->filename, oldurltype, oldinfile, oldoutfile, oldextspec, oldrowfilter, oldbinspec, oldcolspec, status); if (*status > 0) { ffpmsg("could not parse the previously opened filename: (ffopen)"); ffpmsg(oldFptr->filename); return(*status); } if(strcasecmp(oldurltype,"FILE://") == 0) { fits_path2url(oldinfile,tmpStr,status); if(tmpStr[0] != '/') { fits_get_cwd(cwd,status); strcat(cwd,"/"); strcat(cwd,tmpStr); fits_clean_url(cwd,tmpStr,status); } strcpy(oldinfile,tmpStr); } if (!strcmp(urltype, oldurltype) && !strcmp(tmpinfile, oldinfile) ) { /* identical type of file and root file name */ if ( (!rowfilter[0] && !oldrowfilter[0] && !binspec[0] && !oldbinspec[0] && !colspec[0] && !oldcolspec[0]) /* no filtering or binning specs for either file, so */ /* this is a case where the same file is being reopened. */ /* It doesn't matter if the extensions are different */ || /* or */ (!strcmp(rowfilter, oldrowfilter) && !strcmp(binspec, oldbinspec) && !strcmp(colspec, oldcolspec) && !strcmp(extspec, oldextspec) ) ) /* filtering specs are given and are identical, and */ /* the same extension is specified */ { if (mode == READWRITE && oldFptr->writemode == READONLY) { /* cannot assume that a file previously opened with READONLY can now be written to (e.g., files on CDROM, or over the the network, or STDIN), so return with an error. */ ffpmsg( "cannot reopen file READWRITE when previously opened READONLY"); ffpmsg(url); return(*status = FILE_NOT_OPENED); } *fptr = (fitsfile *) calloc(1, sizeof(fitsfile)); if (!(*fptr)) { ffpmsg( "failed to allocate structure for following file: (ffopen)"); ffpmsg(url); return(*status = MEMORY_ALLOCATION); } (*fptr)->Fptr = oldFptr; /* point to the structure */ (*fptr)->HDUposition = 0; /* set initial position */ (((*fptr)->Fptr)->open_count)++; /* increment usage counter */ if (binspec[0]) /* if binning specified, don't move */ extspec[0] = '\0'; /* all the filtering has already been applied, so ignore */ rowfilter[0] = '\0'; binspec[0] = '\0'; colspec[0] = '\0'; *isopen = 1; } } } } return(*status); } /*--------------------------------------------------------------------------*/ int fits_is_this_a_copy(char *urltype) /* I - type of file */ /* specialized routine that returns 1 if the file is known to be a temporary copy of the originally opened file. Otherwise it returns 0. */ { int iscopy; if (!strncmp(urltype, "mem", 3) ) iscopy = 1; /* file copy is in memory */ else if (!strncmp(urltype, "compress", 8) ) iscopy = 1; /* compressed diskfile that is uncompressed in memory */ else if (!strncmp(urltype, "http", 4) ) iscopy = 1; /* copied file using http protocol */ else if (!strncmp(urltype, "ftp", 3) ) iscopy = 1; /* copied file using ftp protocol */ else if (!strncmp(urltype, "gsiftp", 6) ) iscopy = 1; /* copied file using gsiftp protocol */ else if (!strncpy(urltype, "stdin", 5) ) iscopy = 1; /* piped stdin has been copied to memory */ else iscopy = 0; /* file is not known to be a copy */ return(iscopy); } /*--------------------------------------------------------------------------*/ static int find_quote(char **string) /* look for the closing single quote character in the input string */ { char *tstr; tstr = *string; while (*tstr) { if (*tstr == '\'') { /* found the closing quote */ *string = tstr + 1; /* set pointer to next char */ return(0); } else { /* skip over any other character */ tstr++; } } return(1); /* opps, didn't find the closing character */ } /*--------------------------------------------------------------------------*/ static int find_doublequote(char **string) /* look for the closing double quote character in the input string */ { char *tstr; tstr = *string; while (*tstr) { if (*tstr == '"') { /* found the closing quote */ *string = tstr + 1; /* set pointer to next char */ return(0); } else { /* skip over any other character */ tstr++; } } return(1); /* opps, didn't find the closing character */ } /*--------------------------------------------------------------------------*/ static int find_paren(char **string) /* look for the closing parenthesis character in the input string */ { char *tstr; tstr = *string; while (*tstr) { if (*tstr == ')') { /* found the closing parens */ *string = tstr + 1; /* set pointer to next char */ return(0); } else if (*tstr == '(') { /* found another level of parens */ tstr++; if (find_paren(&tstr)) return(1); } else if (*tstr == '[') { tstr++; if (find_bracket(&tstr)) return(1); } else if (*tstr == '{') { tstr++; if (find_curlybracket(&tstr)) return(1); } else if (*tstr == '"') { tstr++; if (find_doublequote(&tstr)) return(1); } else if (*tstr == '\'') { tstr++; if (find_quote(&tstr)) return(1); } else { tstr++; } } return(1); /* opps, didn't find the closing character */ } /*--------------------------------------------------------------------------*/ static int find_bracket(char **string) /* look for the closing bracket character in the input string */ { char *tstr; tstr = *string; while (*tstr) { if (*tstr == ']') { /* found the closing bracket */ *string = tstr + 1; /* set pointer to next char */ return(0); } else if (*tstr == '(') { /* found another level of parens */ tstr++; if (find_paren(&tstr)) return(1); } else if (*tstr == '[') { tstr++; if (find_bracket(&tstr)) return(1); } else if (*tstr == '{') { tstr++; if (find_curlybracket(&tstr)) return(1); } else if (*tstr == '"') { tstr++; if (find_doublequote(&tstr)) return(1); } else if (*tstr == '\'') { tstr++; if (find_quote(&tstr)) return(1); } else { tstr++; } } return(1); /* opps, didn't find the closing character */ } /*--------------------------------------------------------------------------*/ static int find_curlybracket(char **string) /* look for the closing curly bracket character in the input string */ { char *tstr; tstr = *string; while (*tstr) { if (*tstr == '}') { /* found the closing curly bracket */ *string = tstr + 1; /* set pointer to next char */ return(0); } else if (*tstr == '(') { /* found another level of parens */ tstr++; if (find_paren(&tstr)) return(1); } else if (*tstr == '[') { tstr++; if (find_bracket(&tstr)) return(1); } else if (*tstr == '{') { tstr++; if (find_curlybracket(&tstr)) return(1); } else if (*tstr == '"') { tstr++; if (find_doublequote(&tstr)) return(1); } else if (*tstr == '\'') { tstr++; if (find_quote(&tstr)) return(1); } else { tstr++; } } return(1); /* opps, didn't find the closing character */ } /*--------------------------------------------------------------------------*/ int comma2semicolon(char *string) /* replace commas with semicolons, unless the comma is within a quoted or bracketed expression */ { char *tstr; tstr = string; while (*tstr) { if (*tstr == ',') { /* found a comma */ *tstr = ';'; tstr++; } else if (*tstr == '(') { /* found another level of parens */ tstr++; if (find_paren(&tstr)) return(1); } else if (*tstr == '[') { tstr++; if (find_bracket(&tstr)) return(1); } else if (*tstr == '{') { tstr++; if (find_curlybracket(&tstr)) return(1); } else if (*tstr == '"') { tstr++; if (find_doublequote(&tstr)) return(1); } else if (*tstr == '\'') { tstr++; if (find_quote(&tstr)) return(1); } else { tstr++; } } return(0); /* reached end of string */ } /*--------------------------------------------------------------------------*/ int ffedit_columns( fitsfile **fptr, /* IO - pointer to input table; on output it */ /* points to the new selected rows table */ char *outfile, /* I - name for output file */ char *expr, /* I - column edit expression */ int *status) /* modify columns in a table and/or header keywords in the HDU */ { fitsfile *newptr; int ii, hdunum, slen, colnum = -1, testnum, deletecol = 0, savecol = 0; int numcols = 0, *colindex = 0, tstatus = 0; char *cptr, *cptr2, *cptr3, *clause = NULL, keyname[FLEN_KEYWORD]; char colname[FLEN_VALUE], oldname[FLEN_VALUE], colformat[FLEN_VALUE]; char *file_expr = NULL, testname[FLEN_VALUE], card[FLEN_CARD]; if (*outfile) { /* create new empty file in to hold the selected rows */ if (ffinit(&newptr, outfile, status) > 0) { ffpmsg("failed to create file for copy (ffedit_columns)"); return(*status); } fits_get_hdu_num(*fptr, &hdunum); /* current HDU number in input file */ /* copy all HDUs to the output copy, if the 'only_one' flag is not set */ if (!((*fptr)->Fptr)->only_one) { for (ii = 1; 1; ii++) { if (fits_movabs_hdu(*fptr, ii, NULL, status) > 0) break; fits_copy_hdu(*fptr, newptr, 0, status); } if (*status == END_OF_FILE) { *status = 0; /* got the expected EOF error; reset = 0 */ } else if (*status > 0) { ffclos(newptr, status); ffpmsg("failed to copy all HDUs from input file (ffedit_columns)"); return(*status); } } else { /* only copy the primary array and the designated table extension */ fits_movabs_hdu(*fptr, 1, NULL, status); fits_copy_hdu(*fptr, newptr, 0, status); fits_movabs_hdu(*fptr, hdunum, NULL, status); fits_copy_hdu(*fptr, newptr, 0, status); if (*status > 0) { ffclos(newptr, status); ffpmsg("failed to copy all HDUs from input file (ffedit_columns)"); return(*status); } hdunum = 2; } /* close the original file and return ptr to the new image */ ffclos(*fptr, status); *fptr = newptr; /* reset the pointer to the new table */ /* move back to the selected table HDU */ if (fits_movabs_hdu(*fptr, hdunum, NULL, status) > 0) { ffpmsg("failed to copy the input file (ffedit_columns)"); return(*status); } } /* remove the "col " from the beginning of the column edit expression */ cptr = expr + 4; while (*cptr == ' ') cptr++; /* skip leading white space */ /* Check if need to import expression from a file */ if( *cptr=='@' ) { if( ffimport_file( cptr+1, &file_expr, status ) ) return(*status); cptr = file_expr; while (*cptr == ' ') cptr++; /* skip leading white space... again */ } tstatus = 0; ffgncl(*fptr, &numcols, &tstatus); /* get initial # of cols */ /* as of July 2012, the CFITSIO column filter syntax was modified */ /* so that commas may be used to separate clauses, as well as semi-colons. */ /* This was done because users cannot enter the semi-colon in the HEASARC's */ /* Hera on-line data processing system for computer security reasons. */ /* Therefore, we must convert those commas back to semi-colons here, but we */ /* must not convert any columns that occur within parenthesies. */ if (comma2semicolon(cptr)) { ffpmsg("parsing error in column filter expression"); ffpmsg(cptr); if( file_expr ) free( file_expr ); *status = PARSE_SYNTAX_ERR; return(*status); } /* parse expression and get first clause, if more than 1 */ while ((slen = fits_get_token2(&cptr, ";", &clause, NULL, status)) > 0 ) { if( *cptr==';' ) cptr++; clause[slen] = '\0'; if (clause[0] == '!' || clause[0] == '-') { /* ===================================== */ /* Case I. delete this column or keyword */ /* ===================================== */ if (ffgcno(*fptr, CASEINSEN, &clause[1], &colnum, status) <= 0) { /* a column with this name exists, so try to delete it */ if (ffdcol(*fptr, colnum, status) > 0) { ffpmsg("failed to delete column in input file:"); ffpmsg(clause); if( colindex ) free( colindex ); if( file_expr ) free( file_expr ); if( clause ) free(clause); return(*status); } deletecol = 1; /* set flag that at least one col was deleted */ numcols--; colnum = -1; } else { ffcmsg(); /* clear previous error message from ffgcno */ /* try deleting a keyword with this name */ *status = 0; if (ffdkey(*fptr, &clause[1], status) > 0) { ffpmsg("column or keyword to be deleted does not exist:"); ffpmsg(clause); if( colindex ) free( colindex ); if( file_expr ) free( file_expr ); if( clause ) free(clause); return(*status); } } } else { /* ===================================================== */ /* Case II: this is either a column name, (case 1) or a new column name followed by double = ("==") followed by the old name which is to be renamed. (case 2A) or a column or keyword name followed by a single "=" and a calculation expression (case 2B) */ /* ===================================================== */ cptr2 = clause; slen = fits_get_token(&cptr2, "( =", colname, NULL); if (slen == 0) { ffpmsg("error: column or keyword name is blank:"); ffpmsg(clause); if( colindex ) free( colindex ); if( file_expr ) free( file_expr ); if (clause) free(clause); return(*status= URL_PARSE_ERROR); } /* If this is a keyword of the form #KEYWORD# then transform to the form #KEYWORDn where n is the previously used column number */ if (colname[0] == '#' && strstr(colname+1, "#") == (colname + strlen(colname) - 1)) { if (colnum <= 0) { ffpmsg("The keyword name:"); ffpmsg(colname); ffpmsg("is invalid unless a column has been previously"); ffpmsg("created or editted by a calculator command"); if( file_expr ) free( file_expr ); if (clause) free(clause); return(*status = URL_PARSE_ERROR); } colname[strlen(colname)-1] = '\0'; /* Make keyword name and put it in oldname */ ffkeyn(colname+1, colnum, oldname, status); if (*status) return (*status); /* Re-copy back into colname */ strcpy(colname+1,oldname); } else if (strstr(colname, "#") == (colname + strlen(colname) - 1)) { /* colname is of the form "NAME#"; if a) colnum is defined, and b) a column with literal name "NAME#" does not exist, and c) a keyword with name "NAMEn" (where n=colnum) exists, then transfrom the colname string to "NAMEn", otherwise do nothing. */ if (colnum > 0) { /* colnum must be defined */ tstatus = 0; ffgcno(*fptr, CASEINSEN, colname, &testnum, &tstatus); if (tstatus != 0 && tstatus != COL_NOT_UNIQUE) { /* OK, column doesn't exist, now see if keyword exists */ ffcmsg(); /* clear previous error message from ffgcno */ strcpy(testname, colname); testname[strlen(testname)-1] = '\0'; /* Make keyword name and put it in oldname */ ffkeyn(testname, colnum, oldname, status); if (*status) { if( file_expr ) free( file_expr ); if (clause) free(clause); return (*status); } tstatus = 0; if (!fits_read_card(*fptr, oldname, card, &tstatus)) { /* Keyword does exist; copy real name back into colname */ strcpy(colname,oldname); } } } } /* if we encountered an opening parenthesis, then we need to */ /* find the closing parenthesis, and concatinate the 2 strings */ /* This supports expressions like: [col #EXTNAME(Extension name)="GTI"] */ if (*cptr2 == '(') { fits_get_token(&cptr2, ")", oldname, NULL); strcat(colname, oldname); strcat(colname, ")"); cptr2++; } while (*cptr2 == ' ') cptr2++; /* skip white space */ if (*cptr2 != '=') { /* ------------------------------------ */ /* case 1 - simply the name of a column */ /* ------------------------------------ */ /* look for matching column */ ffgcno(*fptr, CASEINSEN, colname, &testnum, status); while (*status == COL_NOT_UNIQUE) { /* the column name contained wild cards, and it */ /* matches more than one column in the table. */ colnum = testnum; /* keep this column in the output file */ savecol = 1; if (!colindex) colindex = (int *) calloc(999, sizeof(int)); colindex[colnum - 1] = 1; /* flag this column number */ /* look for other matching column names */ ffgcno(*fptr, CASEINSEN, colname, &testnum, status); if (*status == COL_NOT_FOUND) *status = 999; /* temporary status flag value */ } if (*status <= 0) { colnum = testnum; /* keep this column in the output file */ savecol = 1; if (!colindex) colindex = (int *) calloc(999, sizeof(int)); colindex[colnum - 1] = 1; /* flag this column number */ } else if (*status == 999) { /* this special flag value does not represent an error */ *status = 0; } else { ffpmsg("Syntax error in columns specifier in input URL:"); ffpmsg(cptr2); if( colindex ) free( colindex ); if( file_expr ) free( file_expr ); if (clause) free(clause); return(*status = URL_PARSE_ERROR); } } else { /* ----------------------------------------------- */ /* case 2 where the token ends with an equals sign */ /* ----------------------------------------------- */ cptr2++; /* skip over the first '=' */ if (*cptr2 == '=') { /*................................................. */ /* Case A: rename a column or keyword; syntax is "new_name == old_name" */ /*................................................. */ cptr2++; /* skip the 2nd '=' */ while (*cptr2 == ' ') cptr2++; /* skip white space */ fits_get_token(&cptr2, " ", oldname, NULL); /* get column number of the existing column */ if (ffgcno(*fptr, CASEINSEN, oldname, &colnum, status) <= 0) { /* modify the TTYPEn keyword value with the new name */ ffkeyn("TTYPE", colnum, keyname, status); if (ffmkys(*fptr, keyname, colname, NULL, status) > 0) { ffpmsg("failed to rename column in input file"); ffpmsg(" oldname ="); ffpmsg(oldname); ffpmsg(" newname ="); ffpmsg(colname); if( colindex ) free( colindex ); if( file_expr ) free( file_expr ); if (clause) free(clause); return(*status); } /* keep this column in the output file */ savecol = 1; if (!colindex) colindex = (int *) calloc(999, sizeof(int)); colindex[colnum - 1] = 1; /* flag this column number */ } else { /* try renaming a keyword */ ffcmsg(); /* clear error message stack */ *status = 0; if (ffmnam(*fptr, oldname, colname, status) > 0) { ffpmsg("column or keyword to be renamed does not exist:"); ffpmsg(clause); if( colindex ) free( colindex ); if( file_expr ) free( file_expr ); if (clause) free(clause); return(*status); } } } else { /*...................................................... */ /* Case B: */ /* this must be a general column/keyword calc expression */ /* "name = expression" or "colname(TFORM) = expression" */ /*...................................................... */ /* parse the name and TFORM values, if present */ colformat[0] = '\0'; cptr3 = colname; fits_get_token(&cptr3, "(", oldname, NULL); if (cptr3[0] == '(' ) { cptr3++; /* skip the '(' */ fits_get_token(&cptr3, ")", colformat, NULL); } /* calculate values for the column or keyword */ /* cptr2 = the expression to be calculated */ /* oldname = name of the column or keyword */ /* colformat = column format, or keyword comment string */ if (fits_calculator(*fptr, cptr2, *fptr, oldname, colformat, status) > 0) { ffpmsg("Unable to calculate expression"); if( colindex ) free( colindex ); if( file_expr ) free( file_expr ); if (clause) free(clause); return(*status); } /* test if this is a column and not a keyword */ tstatus = 0; ffgcno(*fptr, CASEINSEN, oldname, &testnum, &tstatus); if (tstatus == 0) { /* keep this column in the output file */ colnum = testnum; savecol = 1; if (!colindex) colindex = (int *) calloc(999, sizeof(int)); colindex[colnum - 1] = 1; if (colnum > numcols)numcols++; } else { ffcmsg(); /* clear the error message stack */ } } } } if (clause) free(clause); /* free old clause before getting new one */ clause = NULL; } if (savecol && !deletecol) { /* need to delete all but the specified columns */ for (ii = numcols; ii > 0; ii--) { if (!colindex[ii-1]) /* delete this column */ { if (ffdcol(*fptr, ii, status) > 0) { ffpmsg("failed to delete column in input file:"); ffpmsg(clause); if( colindex ) free( colindex ); if( file_expr ) free( file_expr ); if (clause) free(clause); return(*status); } } } } if( colindex ) free( colindex ); if( file_expr ) free( file_expr ); if (clause) free(clause); return(*status); } /*--------------------------------------------------------------------------*/ int fits_copy_cell2image( fitsfile *fptr, /* I - point to input table */ fitsfile *newptr, /* O - existing output file; new image HDU will be appended to it */ char *colname, /* I - column name / number containing the image*/ long rownum, /* I - number of the row containing the image */ int *status) /* IO - error status */ /* Copy a table cell of a given row and column into an image extension. The output file must already have been created. A new image extension will be created in that file. This routine was written by Craig Markwardt, GSFC */ { unsigned char buffer[30000]; int hdutype, colnum, typecode, bitpix, naxis, maxelem, tstatus; LONGLONG naxes[9], nbytes, firstbyte, ntodo; LONGLONG repeat, startpos, elemnum, rowlen, tnull; long twidth, incre; double scale, zero; char tform[20]; char card[FLEN_CARD]; char templt[FLEN_CARD] = ""; /* Table-to-image keyword translation table */ /* INPUT OUTPUT */ /* 01234567 01234567 */ char *patterns[][2] = {{"TSCALn", "BSCALE" }, /* Standard FITS keywords */ {"TZEROn", "BZERO" }, {"TUNITn", "BUNIT" }, {"TNULLn", "BLANK" }, {"TDMINn", "DATAMIN" }, {"TDMAXn", "DATAMAX" }, {"iCTYPn", "CTYPEi" }, /* Coordinate labels */ {"iCTYna", "CTYPEia" }, {"iCUNIn", "CUNITi" }, /* Coordinate units */ {"iCUNna", "CUNITia" }, {"iCRVLn", "CRVALi" }, /* WCS keywords */ {"iCRVna", "CRVALia" }, {"iCDLTn", "CDELTi" }, {"iCDEna", "CDELTia" }, {"iCRPXn", "CRPIXi" }, {"iCRPna", "CRPIXia" }, {"ijPCna", "PCi_ja" }, {"ijCDna", "CDi_ja" }, {"iVn_ma", "PVi_ma" }, {"iSn_ma", "PSi_ma" }, {"iCRDna", "CRDERia" }, {"iCSYna", "CSYERia" }, {"iCROTn", "CROTAi" }, {"WCAXna", "WCSAXESa"}, {"WCSNna", "WCSNAMEa"}, {"LONPna", "LONPOLEa"}, {"LATPna", "LATPOLEa"}, {"EQUIna", "EQUINOXa"}, {"MJDOBn", "MJD-OBS" }, {"MJDAn", "MJD-AVG" }, {"RADEna", "RADESYSa"}, {"iCNAna", "CNAMEia" }, {"DAVGn", "DATE-AVG"}, /* Delete table keywords related to other columns */ {"T????#a", "-" }, {"TC??#a", "-" }, {"TWCS#a", "-" }, {"TDIM#", "-" }, {"iCTYPm", "-" }, {"iCUNIm", "-" }, {"iCRVLm", "-" }, {"iCDLTm", "-" }, {"iCRPXm", "-" }, {"iCTYma", "-" }, {"iCUNma", "-" }, {"iCRVma", "-" }, {"iCDEma", "-" }, {"iCRPma", "-" }, {"ijPCma", "-" }, {"ijCDma", "-" }, {"iVm_ma", "-" }, {"iSm_ma", "-" }, {"iCRDma", "-" }, {"iCSYma", "-" }, {"iCROTm", "-" }, {"WCAXma", "-" }, {"WCSNma", "-" }, {"LONPma", "-" }, {"LATPma", "-" }, {"EQUIma", "-" }, {"MJDOBm", "-" }, {"MJDAm", "-" }, {"RADEma", "-" }, {"iCNAma", "-" }, {"DAVGm", "-" }, {"EXTNAME", "-" }, /* Remove structural keywords*/ {"EXTVER", "-" }, {"EXTLEVEL","-" }, {"CHECKSUM","-" }, {"DATASUM", "-" }, {"*", "+" }}; /* copy all other keywords */ int npat; if (*status > 0) return(*status); /* get column number */ if (ffgcno(fptr, CASEINSEN, colname, &colnum, status) > 0) { ffpmsg("column containing image in table cell does not exist:"); ffpmsg(colname); return(*status); } /*---------------------------------------------------*/ /* Check input and get parameters about the column: */ /*---------------------------------------------------*/ if ( ffgcprll(fptr, colnum, rownum, 1L, 1L, 0, &scale, &zero, tform, &twidth, &typecode, &maxelem, &startpos, &elemnum, &incre, &repeat, &rowlen, &hdutype, &tnull, (char *) buffer, status) > 0 ) return(*status); /* get the actual column name, in case a column number was given */ ffkeyn("", colnum, templt, &tstatus); ffgcnn(fptr, CASEINSEN, templt, colname, &colnum, &tstatus); if (hdutype != BINARY_TBL) { ffpmsg("This extension is not a binary table."); ffpmsg(" Cannot open the image in a binary table cell."); return(*status = NOT_BTABLE); } if (typecode < 0) { /* variable length array */ typecode *= -1; /* variable length arrays are 1-dimensional by default */ naxis = 1; naxes[0] = repeat; } else { /* get the dimensions of the image */ ffgtdmll(fptr, colnum, 9, &naxis, naxes, status); } if (*status > 0) { ffpmsg("Error getting the dimensions of the image"); return(*status); } /* determine BITPIX value for the image */ if (typecode == TBYTE) { bitpix = BYTE_IMG; nbytes = repeat; } else if (typecode == TSHORT) { bitpix = SHORT_IMG; nbytes = repeat * 2; } else if (typecode == TLONG) { bitpix = LONG_IMG; nbytes = repeat * 4; } else if (typecode == TFLOAT) { bitpix = FLOAT_IMG; nbytes = repeat * 4; } else if (typecode == TDOUBLE) { bitpix = DOUBLE_IMG; nbytes = repeat * 8; } else if (typecode == TLONGLONG) { bitpix = LONGLONG_IMG; nbytes = repeat * 8; } else if (typecode == TLOGICAL) { bitpix = BYTE_IMG; nbytes = repeat; } else { ffpmsg("Error: the following image column has invalid datatype:"); ffpmsg(colname); ffpmsg(tform); ffpmsg("Cannot open an image in a single row of this column."); return(*status = BAD_TFORM); } /* create new image in output file */ if (ffcrimll(newptr, bitpix, naxis, naxes, status) > 0) { ffpmsg("failed to write required primary array keywords in the output file"); return(*status); } npat = sizeof(patterns)/sizeof(patterns[0][0])/2; /* skip over the first 8 keywords, starting just after TFIELDS */ fits_translate_keywords(fptr, newptr, 9, patterns, npat, colnum, 0, 0, status); /* add some HISTORY */ sprintf(card,"HISTORY This image was copied from row %ld of column '%s',", rownum, colname); /* disable this; leave it up to the caller to write history if needed. ffprec(newptr, card, status); */ /* the use of ffread routine, below, requires that any 'dirty' */ /* buffers in memory be flushed back to the file first */ ffflsh(fptr, FALSE, status); /* finally, copy the data, one buffer size at a time */ ffmbyt(fptr, startpos, TRUE, status); firstbyte = 1; /* the upper limit on the number of bytes must match the declaration */ /* read up to the first 30000 bytes in the normal way with ffgbyt */ ntodo = minvalue(30000, nbytes); ffgbyt(fptr, ntodo, buffer, status); ffptbb(newptr, 1, firstbyte, ntodo, buffer, status); nbytes -= ntodo; firstbyte += ntodo; /* read any additional bytes with low-level ffread routine, for speed */ while (nbytes && (*status <= 0) ) { ntodo = minvalue(30000, nbytes); ffread((fptr)->Fptr, (long) ntodo, buffer, status); ffptbb(newptr, 1, firstbyte, ntodo, buffer, status); nbytes -= ntodo; firstbyte += ntodo; } /* Re-scan the header so that CFITSIO knows about all the new keywords */ ffrdef(newptr,status); return(*status); } /*--------------------------------------------------------------------------*/ int fits_copy_image2cell( fitsfile *fptr, /* I - pointer to input image extension */ fitsfile *newptr, /* I - pointer to output table */ char *colname, /* I - name of column containing the image */ long rownum, /* I - number of the row containing the image */ int copykeyflag, /* I - controls which keywords to copy */ int *status) /* IO - error status */ /* Copy an image extension into a table cell at a given row and column. The table must have already been created. If the "colname" column exists, it will be used, otherwise a new column will be created in the table. The "copykeyflag" parameter controls which keywords to copy from the input image to the output table header (with any appropriate translation). copykeyflag = 0 -- no keywords will be copied copykeyflag = 1 -- essentially all keywords will be copied copykeyflag = 2 -- copy only the WCS related keywords This routine was written by Craig Markwardt, GSFC */ { tcolumn *colptr; unsigned char buffer[30000]; int ii, hdutype, colnum, typecode, bitpix, naxis, ncols, hdunum; char tformchar, tform[20], card[FLEN_CARD]; LONGLONG imgstart, naxes[9], nbytes, repeat, ntodo,firstbyte; char filename[FLEN_FILENAME+20]; int npat; int naxis1; LONGLONG naxes1[9] = {0,0,0,0,0,0,0,0,0}, repeat1, width1; int typecode1; unsigned char dummy = 0; LONGLONG headstart, datastart, dataend; /* Image-to-table keyword translation table */ /* INPUT OUTPUT */ /* 01234567 01234567 */ char *patterns[][2] = {{"BSCALE", "TSCALn" }, /* Standard FITS keywords */ {"BZERO", "TZEROn" }, {"BUNIT", "TUNITn" }, {"BLANK", "TNULLn" }, {"DATAMIN", "TDMINn" }, {"DATAMAX", "TDMAXn" }, {"CTYPEi", "iCTYPn" }, /* Coordinate labels */ {"CTYPEia", "iCTYna" }, {"CUNITi", "iCUNIn" }, /* Coordinate units */ {"CUNITia", "iCUNna" }, {"CRVALi", "iCRVLn" }, /* WCS keywords */ {"CRVALia", "iCRVna" }, {"CDELTi", "iCDLTn" }, {"CDELTia", "iCDEna" }, {"CRPIXj", "jCRPXn" }, {"CRPIXja", "jCRPna" }, {"PCi_ja", "ijPCna" }, {"CDi_ja", "ijCDna" }, {"PVi_ma", "iVn_ma" }, {"PSi_ma", "iSn_ma" }, {"WCSAXESa","WCAXna" }, {"WCSNAMEa","WCSNna" }, {"CRDERia", "iCRDna" }, {"CSYERia", "iCSYna" }, {"CROTAi", "iCROTn" }, {"LONPOLEa","LONPna"}, {"LATPOLEa","LATPna"}, {"EQUINOXa","EQUIna"}, {"MJD-OBS", "MJDOBn" }, {"MJD-AVG", "MJDAn" }, {"RADESYSa","RADEna"}, {"CNAMEia", "iCNAna" }, {"DATE-AVG","DAVGn"}, {"NAXISi", "-" }, /* Remove structural keywords*/ {"PCOUNT", "-" }, {"GCOUNT", "-" }, {"EXTEND", "-" }, {"EXTNAME", "-" }, {"EXTVER", "-" }, {"EXTLEVEL","-" }, {"CHECKSUM","-" }, {"DATASUM", "-" }, {"*", "+" }}; /* copy all other keywords */ if (*status > 0) return(*status); if (fptr == 0 || newptr == 0) return (*status = NULL_INPUT_PTR); if (ffghdt(fptr, &hdutype, status) > 0) { ffpmsg("could not get input HDU type"); return (*status); } if (hdutype != IMAGE_HDU) { ffpmsg("The input extension is not an image."); ffpmsg(" Cannot open the image."); return(*status = NOT_IMAGE); } if (ffghdt(newptr, &hdutype, status) > 0) { ffpmsg("could not get output HDU type"); return (*status); } if (hdutype != BINARY_TBL) { ffpmsg("The output extension is not a table."); return(*status = NOT_BTABLE); } if (ffgiprll(fptr, 9, &bitpix, &naxis, naxes, status) > 0) { ffpmsg("Could not read image parameters."); return (*status); } /* Determine total number of pixels in the image */ repeat = 1; for (ii = 0; ii < naxis; ii++) repeat *= naxes[ii]; /* Determine the TFORM value for the table cell */ if (bitpix == BYTE_IMG) { typecode = TBYTE; tformchar = 'B'; nbytes = repeat; } else if (bitpix == SHORT_IMG) { typecode = TSHORT; tformchar = 'I'; nbytes = repeat*2; } else if (bitpix == LONG_IMG) { typecode = TLONG; tformchar = 'J'; nbytes = repeat*4; } else if (bitpix == FLOAT_IMG) { typecode = TFLOAT; tformchar = 'E'; nbytes = repeat*4; } else if (bitpix == DOUBLE_IMG) { typecode = TDOUBLE; tformchar = 'D'; nbytes = repeat*8; } else if (bitpix == LONGLONG_IMG) { typecode = TLONGLONG; tformchar = 'K'; nbytes = repeat*8; } else { ffpmsg("Error: the image has an invalid datatype."); return (*status = BAD_BITPIX); } /* get column number */ ffpmrk(); ffgcno(newptr, CASEINSEN, colname, &colnum, status); ffcmrk(); /* Column does not exist; create it */ if (*status) { *status = 0; sprintf(tform, "%.0f%c", (double) repeat, tformchar); ffgncl(newptr, &ncols, status); colnum = ncols+1; fficol(newptr, colnum, colname, tform, status); ffptdmll(newptr, colnum, naxis, naxes, status); if (*status) { ffpmsg("Could not insert new column into output table."); return *status; } } else { ffgtdmll(newptr, colnum, 9, &naxis1, naxes1, status); if (*status > 0 || naxis != naxis1) { ffpmsg("Input image dimensions and output table cell dimensions do not match."); return (*status = BAD_DIMEN); } for (ii=0; ii 0) || (typecode1 != typecode) || (repeat1 != repeat)) { ffpmsg("Input image data type does not match output table cell type."); return (*status = BAD_TFORM); } } /* copy keywords from input image to output table, if required */ if (copykeyflag) { npat = sizeof(patterns)/sizeof(patterns[0][0])/2; if (copykeyflag == 2) { /* copy only the WCS-related keywords */ patterns[npat-1][1] = "-"; } /* The 3rd parameter value = 5 means skip the first 4 keywords in the image */ fits_translate_keywords(fptr, newptr, 5, patterns, npat, colnum, 0, 0, status); } /* Here is all the code to compute offsets: * * byte offset from start of row to column (dest table) * * byte offset from start of file to image data (source image) */ /* Force the writing of the row of the table by writing the last byte of the array, which grows the table, and/or shifts following extensions */ ffpcl(newptr, TBYTE, colnum, rownum, repeat, 1, &dummy, status); /* byte offset within the row to the start of the image column */ colptr = (newptr->Fptr)->tableptr; /* point to first column */ colptr += (colnum - 1); /* offset to correct column structure */ firstbyte = colptr->tbcol + 1; /* get starting address of input image to be read */ ffghadll(fptr, &headstart, &datastart, &dataend, status); imgstart = datastart; sprintf(card, "HISTORY Table column '%s' row %ld copied from image", colname, rownum); /* Don't automatically write History keywords; leave this up to the caller. ffprec(newptr, card, status); */ /* write HISTORY keyword with the file name (this is now disabled)*/ filename[0] = '\0'; hdunum = 0; strcpy(filename, "HISTORY "); ffflnm(fptr, filename+strlen(filename), status); ffghdn(fptr, &hdunum); sprintf(filename+strlen(filename),"[%d]", hdunum-1); /* ffprec(newptr, filename, status); */ /* the use of ffread routine, below, requires that any 'dirty' */ /* buffers in memory be flushed back to the file first */ ffflsh(fptr, FALSE, status); /* move to the first byte of the input image */ ffmbyt(fptr, imgstart, TRUE, status); ntodo = minvalue(30000L, nbytes); ffgbyt(fptr, ntodo, buffer, status); /* read input image */ ffptbb(newptr, rownum, firstbyte, ntodo, buffer, status); /* write to table */ nbytes -= ntodo; firstbyte += ntodo; /* read any additional bytes with low-level ffread routine, for speed */ while (nbytes && (*status <= 0) ) { ntodo = minvalue(30000L, nbytes); ffread(fptr->Fptr, (long) ntodo, buffer, status); ffptbb(newptr, rownum, firstbyte, ntodo, buffer, status); nbytes -= ntodo; firstbyte += ntodo; } /* Re-scan the header so that CFITSIO knows about all the new keywords */ ffrdef(newptr,status); return(*status); } /*--------------------------------------------------------------------------*/ int fits_select_image_section( fitsfile **fptr, /* IO - pointer to input image; on output it */ /* points to the new subimage */ char *outfile, /* I - name for output file */ char *expr, /* I - Image section expression */ int *status) { /* copies an image section from the input file to a new output file. Any HDUs preceding or following the image are also copied to the output file. */ fitsfile *newptr; int ii, hdunum; /* create new empty file to hold the image section */ if (ffinit(&newptr, outfile, status) > 0) { ffpmsg( "failed to create output file for image section:"); ffpmsg(outfile); return(*status); } fits_get_hdu_num(*fptr, &hdunum); /* current HDU number in input file */ /* copy all preceding extensions to the output file, if 'only_one' flag not set */ if (!(((*fptr)->Fptr)->only_one)) { for (ii = 1; ii < hdunum; ii++) { fits_movabs_hdu(*fptr, ii, NULL, status); if (fits_copy_hdu(*fptr, newptr, 0, status) > 0) { ffclos(newptr, status); return(*status); } } /* move back to the original HDU position */ fits_movabs_hdu(*fptr, hdunum, NULL, status); } if (fits_copy_image_section(*fptr, newptr, expr, status) > 0) { ffclos(newptr, status); return(*status); } /* copy any remaining HDUs to the output file, if 'only_one' flag not set */ if (!(((*fptr)->Fptr)->only_one)) { for (ii = hdunum + 1; 1; ii++) { if (fits_movabs_hdu(*fptr, ii, NULL, status) > 0) break; fits_copy_hdu(*fptr, newptr, 0, status); } if (*status == END_OF_FILE) *status = 0; /* got the expected EOF error; reset = 0 */ else if (*status > 0) { ffclos(newptr, status); return(*status); } } else { ii = hdunum + 1; /* this value of ii is required below */ } /* close the original file and return ptr to the new image */ ffclos(*fptr, status); *fptr = newptr; /* reset the pointer to the new table */ /* move back to the image subsection */ if (ii - 1 != hdunum) fits_movabs_hdu(*fptr, hdunum, NULL, status); else { /* may have to reset BSCALE and BZERO pixel scaling, */ /* since the keywords were previously turned off */ if (ffrdef(*fptr, status) > 0) { ffclos(*fptr, status); return(*status); } } return(*status); } /*--------------------------------------------------------------------------*/ int fits_copy_image_section( fitsfile *fptr, /* I - pointer to input image */ fitsfile *newptr, /* I - pointer to output image */ char *expr, /* I - Image section expression */ int *status) { /* copies an image section from the input file to a new output HDU */ int bitpix, naxis, numkeys, nkey; long naxes[] = {1,1,1,1,1,1,1,1,1}, smin, smax, sinc; long fpixels[] = {1,1,1,1,1,1,1,1,1}; long lpixels[] = {1,1,1,1,1,1,1,1,1}; long incs[] = {1,1,1,1,1,1,1,1,1}; char *cptr, keyname[FLEN_KEYWORD], card[FLEN_CARD]; int ii, tstatus, anynull; long minrow, maxrow, minslice, maxslice, mincube, maxcube; long firstpix; long ncubeiter, nsliceiter, nrowiter, kiter, jiter, iiter; int klen, kk, jj; long outnaxes[9], outsize, buffsize; double *buffer, crpix, cdelt; if (*status > 0) return(*status); /* get the size of the input image */ fits_get_img_type(fptr, &bitpix, status); fits_get_img_dim(fptr, &naxis, status); if (fits_get_img_size(fptr, naxis, naxes, status) > 0) return(*status); if (naxis < 1 || naxis > 4) { ffpmsg( "Input image either had NAXIS = 0 (NULL image) or has > 4 dimensions"); return(*status = BAD_NAXIS); } /* create output image with same size and type as the input image */ /* Will update the size later */ fits_create_img(newptr, bitpix, naxis, naxes, status); /* copy all other non-structural keywords from the input to output file */ fits_get_hdrspace(fptr, &numkeys, NULL, status); for (nkey = 4; nkey <= numkeys; nkey++) /* skip the first few keywords */ { fits_read_record(fptr, nkey, card, status); if (fits_get_keyclass(card) > TYP_CMPRS_KEY) { /* write the record to the output file */ fits_write_record(newptr, card, status); } } if (*status > 0) { ffpmsg("error copying header from input image to output image"); return(*status); } /* parse the section specifier to get min, max, and inc for each axis */ /* and the size of each output image axis */ cptr = expr; for (ii=0; ii < naxis; ii++) { if (fits_get_section_range(&cptr, &smin, &smax, &sinc, status) > 0) { ffpmsg("error parsing the following image section specifier:"); ffpmsg(expr); return(*status); } if (smax == 0) smax = naxes[ii]; /* use whole axis by default */ else if (smin == 0) smin = naxes[ii]; /* use inverted whole axis */ if (smin > naxes[ii] || smax > naxes[ii]) { ffpmsg("image section exceeds dimensions of input image:"); ffpmsg(expr); return(*status = BAD_NAXIS); } fpixels[ii] = smin; lpixels[ii] = smax; incs[ii] = sinc; if (smin <= smax) outnaxes[ii] = (smax - smin + sinc) / sinc; else outnaxes[ii] = (smin - smax + sinc) / sinc; /* modify the NAXISn keyword */ fits_make_keyn("NAXIS", ii + 1, keyname, status); fits_modify_key_lng(newptr, keyname, outnaxes[ii], NULL, status); /* modify the WCS keywords if necessary */ if (fpixels[ii] != 1 || incs[ii] != 1) { for (kk=-1;kk<26; kk++) /* modify any alternate WCS keywords */ { /* read the CRPIXn keyword if it exists in the input file */ fits_make_keyn("CRPIX", ii + 1, keyname, status); if (kk != -1) { klen = strlen(keyname); keyname[klen]='A' + kk; keyname[klen + 1] = '\0'; } tstatus = 0; if (fits_read_key(fptr, TDOUBLE, keyname, &crpix, NULL, &tstatus) == 0) { /* calculate the new CRPIXn value */ if (fpixels[ii] <= lpixels[ii]) { crpix = (crpix - (fpixels[ii])) / incs[ii] + 1.0; /* crpix = (crpix - (fpixels[ii] - 1.0) - .5) / incs[ii] + 0.5; */ } else { crpix = (fpixels[ii] - crpix) / incs[ii] + 1.0; /* crpix = (fpixels[ii] - (crpix - 1.0) - .5) / incs[ii] + 0.5; */ } /* modify the value in the output file */ fits_modify_key_dbl(newptr, keyname, crpix, 15, NULL, status); if (incs[ii] != 1 || fpixels[ii] > lpixels[ii]) { /* read the CDELTn keyword if it exists in the input file */ fits_make_keyn("CDELT", ii + 1, keyname, status); if (kk != -1) { klen = strlen(keyname); keyname[klen]='A' + kk; keyname[klen + 1] = '\0'; } tstatus = 0; if (fits_read_key(fptr, TDOUBLE, keyname, &cdelt, NULL, &tstatus) == 0) { /* calculate the new CDELTn value */ if (fpixels[ii] <= lpixels[ii]) cdelt = cdelt * incs[ii]; else cdelt = cdelt * (-incs[ii]); /* modify the value in the output file */ fits_modify_key_dbl(newptr, keyname, cdelt, 15, NULL, status); } /* modify the CDi_j keywords if they exist in the input file */ fits_make_keyn("CD1_", ii + 1, keyname, status); if (kk != -1) { klen = strlen(keyname); keyname[klen]='A' + kk; keyname[klen + 1] = '\0'; } for (jj=0; jj < 9; jj++) /* look for up to 9 dimensions */ { keyname[2] = '1' + jj; tstatus = 0; if (fits_read_key(fptr, TDOUBLE, keyname, &cdelt, NULL, &tstatus) == 0) { /* calculate the new CDi_j value */ if (fpixels[ii] <= lpixels[ii]) cdelt = cdelt * incs[ii]; else cdelt = cdelt * (-incs[ii]); /* modify the value in the output file */ fits_modify_key_dbl(newptr, keyname, cdelt, 15, NULL, status); } } } /* end of if (incs[ii]... loop */ } /* end of fits_read_key loop */ } /* end of for (kk loop */ } } /* end of main NAXIS loop */ if (ffrdef(newptr, status) > 0) /* force the header to be scanned */ { return(*status); } /* turn off any scaling of the pixel values */ fits_set_bscale(fptr, 1.0, 0.0, status); fits_set_bscale(newptr, 1.0, 0.0, status); /* to reduce memory foot print, just read/write image 1 row at a time */ outsize = outnaxes[0]; buffsize = (abs(bitpix) / 8) * outsize; buffer = (double *) malloc(buffsize); /* allocate memory for the image row */ if (!buffer) { ffpmsg("fits_copy_image_section: no memory for image section"); return(*status = MEMORY_ALLOCATION); } /* read the image section then write it to the output file */ minrow = fpixels[1]; maxrow = lpixels[1]; if (minrow > maxrow) { nrowiter = (minrow - maxrow + incs[1]) / incs[1]; } else { nrowiter = (maxrow - minrow + incs[1]) / incs[1]; } minslice = fpixels[2]; maxslice = lpixels[2]; if (minslice > maxslice) { nsliceiter = (minslice - maxslice + incs[2]) / incs[2]; } else { nsliceiter = (maxslice - minslice + incs[2]) / incs[2]; } mincube = fpixels[3]; maxcube = lpixels[3]; if (mincube > maxcube) { ncubeiter = (mincube - maxcube + incs[3]) / incs[3]; } else { ncubeiter = (maxcube - mincube + incs[3]) / incs[3]; } firstpix = 1; for (kiter = 0; kiter < ncubeiter; kiter++) { if (mincube > maxcube) { fpixels[3] = mincube - (kiter * incs[3]); } else { fpixels[3] = mincube + (kiter * incs[3]); } lpixels[3] = fpixels[3]; for (jiter = 0; jiter < nsliceiter; jiter++) { if (minslice > maxslice) { fpixels[2] = minslice - (jiter * incs[2]); } else { fpixels[2] = minslice + (jiter * incs[2]); } lpixels[2] = fpixels[2]; for (iiter = 0; iiter < nrowiter; iiter++) { if (minrow > maxrow) { fpixels[1] = minrow - (iiter * incs[1]); } else { fpixels[1] = minrow + (iiter * incs[1]); } lpixels[1] = fpixels[1]; if (bitpix == 8) { ffgsvb(fptr, 1, naxis, naxes, fpixels, lpixels, incs, 0, (unsigned char *) buffer, &anynull, status); ffpprb(newptr, 1, firstpix, outsize, (unsigned char *) buffer, status); } else if (bitpix == 16) { ffgsvi(fptr, 1, naxis, naxes, fpixels, lpixels, incs, 0, (short *) buffer, &anynull, status); ffppri(newptr, 1, firstpix, outsize, (short *) buffer, status); } else if (bitpix == 32) { ffgsvk(fptr, 1, naxis, naxes, fpixels, lpixels, incs, 0, (int *) buffer, &anynull, status); ffpprk(newptr, 1, firstpix, outsize, (int *) buffer, status); } else if (bitpix == -32) { ffgsve(fptr, 1, naxis, naxes, fpixels, lpixels, incs, FLOATNULLVALUE, (float *) buffer, &anynull, status); ffppne(newptr, 1, firstpix, outsize, (float *) buffer, FLOATNULLVALUE, status); } else if (bitpix == -64) { ffgsvd(fptr, 1, naxis, naxes, fpixels, lpixels, incs, DOUBLENULLVALUE, buffer, &anynull, status); ffppnd(newptr, 1, firstpix, outsize, buffer, DOUBLENULLVALUE, status); } else if (bitpix == 64) { ffgsvjj(fptr, 1, naxis, naxes, fpixels, lpixels, incs, 0, (LONGLONG *) buffer, &anynull, status); ffpprjj(newptr, 1, firstpix, outsize, (LONGLONG *) buffer, status); } firstpix += outsize; } } } free(buffer); /* finished with the memory */ if (*status > 0) { ffpmsg("fits_copy_image_section: error copying image section"); return(*status); } return(*status); } /*--------------------------------------------------------------------------*/ int fits_get_section_range(char **ptr, long *secmin, long *secmax, long *incre, int *status) /* Parse the input image section specification string, returning the min, max and increment values. Typical string = "1:512:2" or "1:512" */ { int slen, isanumber; char token[FLEN_VALUE]; if (*status > 0) return(*status); slen = fits_get_token(ptr, " ,:", token, &isanumber); /* get 1st token */ /* support [:2,:2] type syntax, where the leading * is implied */ if (slen==0) strcpy(token,"*"); if (*token == '*') /* wild card means to use the whole range */ { *secmin = 1; *secmax = 0; } else if (*token == '-' && *(token+1) == '*' ) /* invert the whole range */ { *secmin = 0; *secmax = 1; } else { if (slen == 0 || !isanumber || **ptr != ':') return(*status = URL_PARSE_ERROR); /* the token contains the min value */ *secmin = atol(token); (*ptr)++; /* skip the colon between the min and max values */ slen = fits_get_token(ptr, " ,:", token, &isanumber); /* get token */ if (slen == 0 || !isanumber) return(*status = URL_PARSE_ERROR); /* the token contains the max value */ *secmax = atol(token); } if (**ptr == ':') { (*ptr)++; /* skip the colon between the max and incre values */ slen = fits_get_token(ptr, " ,", token, &isanumber); /* get token */ if (slen == 0 || !isanumber) return(*status = URL_PARSE_ERROR); *incre = atol(token); } else *incre = 1; /* default increment if none is supplied */ if (**ptr == ',') (*ptr)++; while (**ptr == ' ') /* skip any trailing blanks */ (*ptr)++; if (*secmin < 0 || *secmax < 0 || *incre < 1) *status = URL_PARSE_ERROR; return(*status); } /*--------------------------------------------------------------------------*/ int ffselect_table( fitsfile **fptr, /* IO - pointer to input table; on output it */ /* points to the new selected rows table */ char *outfile, /* I - name for output file */ char *expr, /* I - Boolean expression */ int *status) { fitsfile *newptr; int ii, hdunum; if (*outfile) { /* create new empty file in to hold the selected rows */ if (ffinit(&newptr, outfile, status) > 0) { ffpmsg( "failed to create file for selected rows from input table"); ffpmsg(outfile); return(*status); } fits_get_hdu_num(*fptr, &hdunum); /* current HDU number in input file */ /* copy all preceding extensions to the output file, if the 'only_one' flag is not set */ if (!((*fptr)->Fptr)->only_one) { for (ii = 1; ii < hdunum; ii++) { fits_movabs_hdu(*fptr, ii, NULL, status); if (fits_copy_hdu(*fptr, newptr, 0, status) > 0) { ffclos(newptr, status); return(*status); } } } else { /* just copy the primary array */ fits_movabs_hdu(*fptr, 1, NULL, status); if (fits_copy_hdu(*fptr, newptr, 0, status) > 0) { ffclos(newptr, status); return(*status); } } fits_movabs_hdu(*fptr, hdunum, NULL, status); /* copy all the header keywords from the input to output file */ if (fits_copy_header(*fptr, newptr, status) > 0) { ffclos(newptr, status); return(*status); } /* set number of rows = 0 */ fits_modify_key_lng(newptr, "NAXIS2", 0, NULL,status); (newptr->Fptr)->numrows = 0; (newptr->Fptr)->origrows = 0; if (ffrdef(newptr, status) > 0) /* force the header to be scanned */ { ffclos(newptr, status); return(*status); } } else newptr = *fptr; /* will delete rows in place in the table */ /* copy rows which satisfy the selection expression to the output table */ /* or delete the nonqualifying rows if *fptr = newptr. */ if (fits_select_rows(*fptr, newptr, expr, status) > 0) { if (*outfile) ffclos(newptr, status); return(*status); } if (*outfile) { /* copy any remaining HDUs to the output copy */ if (!((*fptr)->Fptr)->only_one) { for (ii = hdunum + 1; 1; ii++) { if (fits_movabs_hdu(*fptr, ii, NULL, status) > 0) break; fits_copy_hdu(*fptr, newptr, 0, status); } if (*status == END_OF_FILE) *status = 0; /* got the expected EOF error; reset = 0 */ else if (*status > 0) { ffclos(newptr, status); return(*status); } } else { hdunum = 2; } /* close the original file and return ptr to the new image */ ffclos(*fptr, status); *fptr = newptr; /* reset the pointer to the new table */ /* move back to the selected table HDU */ fits_movabs_hdu(*fptr, hdunum, NULL, status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffparsecompspec(fitsfile *fptr, /* I - FITS file pointer */ char *compspec, /* I - image compression specification */ int *status) /* IO - error status */ /* Parse the image compression specification that was give in square brackets following the output FITS file name, as in these examples: myfile.fits[compress] - default Rice compression, row by row myfile.fits[compress TYPE] - the first letter of TYPE defines the compression algorithm: R = Rice G = GZIP H = HCOMPRESS HS = HCOMPRESS (with smoothing) B - BZIP2 P = PLIO myfile.fits[compress TYPE 100,100] - the numbers give the dimensions of the compression tiles. Default is NAXIS1, 1, 1, ... other optional parameters may be specified following a semi-colon myfile.fits[compress; q 8.0] q specifies the floating point mufile.fits[compress TYPE; q -.0002] quantization level; myfile.fits[compress TYPE 100,100; q 10, s 25] s specifies the HCOMPRESS integer scaling parameter The compression parameters are saved in the fptr->Fptr structure for use when writing FITS images. */ { char *ptr1; /* initialize with default values */ int ii, compresstype = RICE_1, smooth = 0; int quantize_method = SUBTRACTIVE_DITHER_1; long tilesize[MAX_COMPRESS_DIM] = {0,0,0,0,0,0}; float qlevel = -99., scale = 0.; ptr1 = compspec; while (*ptr1 == ' ') /* ignore leading blanks */ ptr1++; if (strncmp(ptr1, "compress", 8) && strncmp(ptr1, "COMPRESS", 8) ) { /* apparently this string does not specify compression parameters */ return(*status = URL_PARSE_ERROR); } ptr1 += 8; while (*ptr1 == ' ') /* ignore leading blanks */ ptr1++; /* ========================= */ /* look for compression type */ /* ========================= */ if (*ptr1 == 'r' || *ptr1 == 'R') { compresstype = RICE_1; while (*ptr1 != ' ' && *ptr1 != ';' && *ptr1 != '\0') ptr1++; } else if (*ptr1 == 'g' || *ptr1 == 'G') { compresstype = GZIP_1; while (*ptr1 != ' ' && *ptr1 != ';' && *ptr1 != '\0') ptr1++; } /* else if (*ptr1 == 'b' || *ptr1 == 'B') { compresstype = BZIP2_1; while (*ptr1 != ' ' && *ptr1 != ';' && *ptr1 != '\0') ptr1++; } */ else if (*ptr1 == 'p' || *ptr1 == 'P') { compresstype = PLIO_1; while (*ptr1 != ' ' && *ptr1 != ';' && *ptr1 != '\0') ptr1++; } else if (*ptr1 == 'h' || *ptr1 == 'H') { compresstype = HCOMPRESS_1; ptr1++; if (*ptr1 == 's' || *ptr1 == 'S') smooth = 1; /* apply smoothing when uncompressing HCOMPRESSed image */ while (*ptr1 != ' ' && *ptr1 != ';' && *ptr1 != '\0') ptr1++; } /* ======================== */ /* look for tile dimensions */ /* ======================== */ while (*ptr1 == ' ') /* ignore leading blanks */ ptr1++; ii = 0; while (isdigit( (int) *ptr1) && ii < 9) { tilesize[ii] = atol(ptr1); /* read the integer value */ ii++; while (isdigit((int) *ptr1)) /* skip over the integer */ ptr1++; if (*ptr1 == ',') ptr1++; /* skip over the comma */ while (*ptr1 == ' ') /* ignore leading blanks */ ptr1++; } /* ========================================================= */ /* look for semi-colon, followed by other optional parameters */ /* ========================================================= */ if (*ptr1 == ';') { ptr1++; while (*ptr1 == ' ') /* ignore leading blanks */ ptr1++; while (*ptr1 != 0) { /* haven't reached end of string yet */ if (*ptr1 == 's' || *ptr1 == 'S') { /* this should be the HCOMPRESS "scale" parameter; default = 1 */ ptr1++; while (*ptr1 == ' ') /* ignore leading blanks */ ptr1++; scale = (float) strtod(ptr1, &ptr1); while (*ptr1 == ' ' || *ptr1 == ',') /* skip over blanks or comma */ ptr1++; } else if (*ptr1 == 'q' || *ptr1 == 'Q') { /* this should be the floating point quantization parameter */ ptr1++; if (*ptr1 == 'z' || *ptr1 == 'Z') { /* use the subtractive_dither_2 option */ quantize_method = SUBTRACTIVE_DITHER_2; ptr1++; } else if (*ptr1 == '0') { /* do not dither */ quantize_method = NO_DITHER; ptr1++; } while (*ptr1 == ' ') /* ignore leading blanks */ ptr1++; qlevel = (float) strtod(ptr1, &ptr1); while (*ptr1 == ' ' || *ptr1 == ',') /* skip over blanks or comma */ ptr1++; } else { return(*status = URL_PARSE_ERROR); } } } /* ================================= */ /* finished parsing; save the values */ /* ================================= */ fits_set_compression_type(fptr, compresstype, status); fits_set_tile_dim(fptr, MAX_COMPRESS_DIM, tilesize, status); if (compresstype == HCOMPRESS_1) { fits_set_hcomp_scale (fptr, scale, status); fits_set_hcomp_smooth(fptr, smooth, status); } if (qlevel != -99.) { fits_set_quantize_level(fptr, qlevel, status); fits_set_quantize_method(fptr, quantize_method, status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffdkinit(fitsfile **fptr, /* O - FITS file pointer */ const char *name, /* I - name of file to create */ int *status) /* IO - error status */ /* Create and initialize a new FITS file on disk. This routine differs from ffinit in that the input 'name' is literally taken as the name of the disk file to be created, and it does not support CFITSIO's extended filename syntax. */ { if (*status > 0) return(*status); *status = CREATE_DISK_FILE; ffinit(fptr, name,status); return(*status); } /*--------------------------------------------------------------------------*/ int ffinit(fitsfile **fptr, /* O - FITS file pointer */ const char *name, /* I - name of file to create */ int *status) /* IO - error status */ /* Create and initialize a new FITS file. */ { int ii, driver, slen, clobber = 0; char *url; char urltype[MAX_PREFIX_LEN], outfile[FLEN_FILENAME]; char tmplfile[FLEN_FILENAME], compspec[80]; int handle, create_disk_file = 0; if (*status > 0) return(*status); if (*status == CREATE_DISK_FILE) { create_disk_file = 1; *status = 0; } *fptr = 0; /* initialize null file pointer */ if (need_to_initialize) { /* this is called only once */ *status = fits_init_cfitsio(); } if (*status > 0) return(*status); url = (char *) name; while (*url == ' ') /* ignore leading spaces in the filename */ url++; if (*url == '\0') { ffpmsg("Name of file to create is blank. (ffinit)"); return(*status = FILE_NOT_CREATED); } if (create_disk_file) { if (strlen(url) > FLEN_FILENAME - 1) { ffpmsg("Filename is too long. (ffinit)"); return(*status = FILE_NOT_CREATED); } strcpy(outfile, url); strcpy(urltype, "file://"); tmplfile[0] = '\0'; compspec[0] = '\0'; } else { /* check for clobber symbol, i.e, overwrite existing file */ if (*url == '!') { clobber = TRUE; url++; } else clobber = FALSE; /* parse the output file specification */ /* this routine checks that the strings will not overflow */ ffourl(url, urltype, outfile, tmplfile, compspec, status); if (*status > 0) { ffpmsg("could not parse the output filename: (ffinit)"); ffpmsg(url); return(*status); } } /* find which driver corresponds to the urltype */ *status = urltype2driver(urltype, &driver); if (*status) { ffpmsg("could not find driver for this file: (ffinit)"); ffpmsg(url); return(*status); } /* delete pre-existing file, if asked to do so */ if (clobber) { if (driverTable[driver].remove) (*driverTable[driver].remove)(outfile); } /* call appropriate driver to create the file */ if (driverTable[driver].create) { FFLOCK; /* lock this while searching for vacant handle */ *status = (*driverTable[driver].create)(outfile, &handle); FFUNLOCK; if (*status) { ffpmsg("failed to create new file (already exists?):"); ffpmsg(url); return(*status); } } else { ffpmsg("cannot create a new file of this type: (ffinit)"); ffpmsg(url); return(*status = FILE_NOT_CREATED); } /* allocate fitsfile structure and initialize = 0 */ *fptr = (fitsfile *) calloc(1, sizeof(fitsfile)); if (!(*fptr)) { (*driverTable[driver].close)(handle); /* close the file */ ffpmsg("failed to allocate structure for following file: (ffopen)"); ffpmsg(url); return(*status = MEMORY_ALLOCATION); } /* allocate FITSfile structure and initialize = 0 */ (*fptr)->Fptr = (FITSfile *) calloc(1, sizeof(FITSfile)); if (!((*fptr)->Fptr)) { (*driverTable[driver].close)(handle); /* close the file */ ffpmsg("failed to allocate structure for following file: (ffopen)"); ffpmsg(url); free(*fptr); *fptr = 0; return(*status = MEMORY_ALLOCATION); } slen = strlen(url) + 1; slen = maxvalue(slen, 32); /* reserve at least 32 chars */ ((*fptr)->Fptr)->filename = (char *) malloc(slen); /* mem for file name */ if ( !(((*fptr)->Fptr)->filename) ) { (*driverTable[driver].close)(handle); /* close the file */ ffpmsg("failed to allocate memory for filename: (ffinit)"); ffpmsg(url); free((*fptr)->Fptr); free(*fptr); *fptr = 0; /* return null file pointer */ return(*status = FILE_NOT_CREATED); } /* mem for headstart array */ ((*fptr)->Fptr)->headstart = (LONGLONG *) calloc(1001, sizeof(LONGLONG)); if ( !(((*fptr)->Fptr)->headstart) ) { (*driverTable[driver].close)(handle); /* close the file */ ffpmsg("failed to allocate memory for headstart array: (ffinit)"); ffpmsg(url); free( ((*fptr)->Fptr)->filename); free((*fptr)->Fptr); free(*fptr); *fptr = 0; /* return null file pointer */ return(*status = MEMORY_ALLOCATION); } /* mem for file I/O buffers */ ((*fptr)->Fptr)->iobuffer = (char *) calloc(NIOBUF, IOBUFLEN); if ( !(((*fptr)->Fptr)->iobuffer) ) { (*driverTable[driver].close)(handle); /* close the file */ ffpmsg("failed to allocate memory for iobuffer array: (ffinit)"); ffpmsg(url); free( ((*fptr)->Fptr)->headstart); /* free memory for headstart array */ free( ((*fptr)->Fptr)->filename); free((*fptr)->Fptr); free(*fptr); *fptr = 0; /* return null file pointer */ return(*status = MEMORY_ALLOCATION); } /* initialize the ageindex array (relative age of the I/O buffers) */ /* and initialize the bufrecnum array as being empty */ for (ii = 0; ii < NIOBUF; ii++) { ((*fptr)->Fptr)->ageindex[ii] = ii; ((*fptr)->Fptr)->bufrecnum[ii] = -1; } /* store the parameters describing the file */ ((*fptr)->Fptr)->MAXHDU = 1000; /* initial size of headstart */ ((*fptr)->Fptr)->filehandle = handle; /* store the file pointer */ ((*fptr)->Fptr)->driver = driver; /* driver number */ strcpy(((*fptr)->Fptr)->filename, url); /* full input filename */ ((*fptr)->Fptr)->filesize = 0; /* physical file size */ ((*fptr)->Fptr)->logfilesize = 0; /* logical file size */ ((*fptr)->Fptr)->writemode = 1; /* read-write mode */ ((*fptr)->Fptr)->datastart = DATA_UNDEFINED; /* unknown start of data */ ((*fptr)->Fptr)->curbuf = -1; /* undefined current IO buffer */ ((*fptr)->Fptr)->open_count = 1; /* structure is currently used once */ ((*fptr)->Fptr)->validcode = VALIDSTRUC; /* flag denoting valid structure */ ffldrc(*fptr, 0, IGNORE_EOF, status); /* initialize first record */ fits_store_Fptr( (*fptr)->Fptr, status); /* store Fptr address */ /* if template file was given, use it to define structure of new file */ if (tmplfile[0]) ffoptplt(*fptr, tmplfile, status); /* parse and save image compression specification, if given */ if (compspec[0]) ffparsecompspec(*fptr, compspec, status); return(*status); /* successful return */ } /*--------------------------------------------------------------------------*/ /* ffimem == fits_create_memfile */ int ffimem(fitsfile **fptr, /* O - FITS file pointer */ void **buffptr, /* I - address of memory pointer */ size_t *buffsize, /* I - size of buffer, in bytes */ size_t deltasize, /* I - increment for future realloc's */ void *(*mem_realloc)(void *p, size_t newsize), /* function */ int *status) /* IO - error status */ /* Create and initialize a new FITS file in memory */ { int ii, driver, slen; char urltype[MAX_PREFIX_LEN]; int handle; if (*status > 0) return(*status); *fptr = 0; /* initialize null file pointer */ if (need_to_initialize) { /* this is called only once */ *status = fits_init_cfitsio(); } if (*status > 0) return(*status); strcpy(urltype, "memkeep://"); /* URL type for pre-existing memory file */ *status = urltype2driver(urltype, &driver); if (*status > 0) { ffpmsg("could not find driver for pre-existing memory file: (ffimem)"); return(*status); } /* call driver routine to "open" the memory file */ FFLOCK; /* lock this while searching for vacant handle */ *status = mem_openmem( buffptr, buffsize, deltasize, mem_realloc, &handle); FFUNLOCK; if (*status > 0) { ffpmsg("failed to open pre-existing memory file: (ffimem)"); return(*status); } /* allocate fitsfile structure and initialize = 0 */ *fptr = (fitsfile *) calloc(1, sizeof(fitsfile)); if (!(*fptr)) { (*driverTable[driver].close)(handle); /* close the file */ ffpmsg("failed to allocate structure for memory file: (ffimem)"); return(*status = MEMORY_ALLOCATION); } /* allocate FITSfile structure and initialize = 0 */ (*fptr)->Fptr = (FITSfile *) calloc(1, sizeof(FITSfile)); if (!((*fptr)->Fptr)) { (*driverTable[driver].close)(handle); /* close the file */ ffpmsg("failed to allocate structure for memory file: (ffimem)"); free(*fptr); *fptr = 0; return(*status = MEMORY_ALLOCATION); } slen = 32; /* reserve at least 32 chars */ ((*fptr)->Fptr)->filename = (char *) malloc(slen); /* mem for file name */ if ( !(((*fptr)->Fptr)->filename) ) { (*driverTable[driver].close)(handle); /* close the file */ ffpmsg("failed to allocate memory for filename: (ffimem)"); free((*fptr)->Fptr); free(*fptr); *fptr = 0; /* return null file pointer */ return(*status = MEMORY_ALLOCATION); } /* mem for headstart array */ ((*fptr)->Fptr)->headstart = (LONGLONG *) calloc(1001, sizeof(LONGLONG)); if ( !(((*fptr)->Fptr)->headstart) ) { (*driverTable[driver].close)(handle); /* close the file */ ffpmsg("failed to allocate memory for headstart array: (ffimem)"); free( ((*fptr)->Fptr)->filename); free((*fptr)->Fptr); free(*fptr); *fptr = 0; /* return null file pointer */ return(*status = MEMORY_ALLOCATION); } /* mem for file I/O buffers */ ((*fptr)->Fptr)->iobuffer = (char *) calloc(NIOBUF, IOBUFLEN); if ( !(((*fptr)->Fptr)->iobuffer) ) { (*driverTable[driver].close)(handle); /* close the file */ ffpmsg("failed to allocate memory for iobuffer array: (ffimem)"); free( ((*fptr)->Fptr)->headstart); /* free memory for headstart array */ free( ((*fptr)->Fptr)->filename); free((*fptr)->Fptr); free(*fptr); *fptr = 0; /* return null file pointer */ return(*status = MEMORY_ALLOCATION); } /* initialize the ageindex array (relative age of the I/O buffers) */ /* and initialize the bufrecnum array as being empty */ for (ii = 0; ii < NIOBUF; ii++) { ((*fptr)->Fptr)->ageindex[ii] = ii; ((*fptr)->Fptr)->bufrecnum[ii] = -1; } /* store the parameters describing the file */ ((*fptr)->Fptr)->MAXHDU = 1000; /* initial size of headstart */ ((*fptr)->Fptr)->filehandle = handle; /* file handle */ ((*fptr)->Fptr)->driver = driver; /* driver number */ strcpy(((*fptr)->Fptr)->filename, "memfile"); /* dummy filename */ ((*fptr)->Fptr)->filesize = *buffsize; /* physical file size */ ((*fptr)->Fptr)->logfilesize = *buffsize; /* logical file size */ ((*fptr)->Fptr)->writemode = 1; /* read-write mode */ ((*fptr)->Fptr)->datastart = DATA_UNDEFINED; /* unknown start of data */ ((*fptr)->Fptr)->curbuf = -1; /* undefined current IO buffer */ ((*fptr)->Fptr)->open_count = 1; /* structure is currently used once */ ((*fptr)->Fptr)->validcode = VALIDSTRUC; /* flag denoting valid structure */ ffldrc(*fptr, 0, IGNORE_EOF, status); /* initialize first record */ fits_store_Fptr( (*fptr)->Fptr, status); /* store Fptr address */ return(*status); } /*--------------------------------------------------------------------------*/ int fits_init_cfitsio(void) /* initialize anything that is required before using the CFITSIO routines */ { int status; union u_tag { short ival; char cval[2]; } u; fitsio_init_lock(); FFLOCK; /* lockout other threads while executing this critical */ /* section of code */ if (need_to_initialize == 0) { /* already initialized? */ FFUNLOCK; return(0); } /* test for correct byteswapping. */ u.ival = 1; if ((BYTESWAPPED && u.cval[0] != 1) || (BYTESWAPPED == FALSE && u.cval[1] != 1) ) { printf ("\n!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n"); printf(" Byteswapping is not being done correctly on this system.\n"); printf(" Check the MACHINE and BYTESWAPPED definitions in fitsio2.h\n"); printf(" Please report this problem to the CFITSIO developers.\n"); printf( "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n"); FFUNLOCK; return(1); } /* test that LONGLONG is an 8 byte integer */ if (sizeof(LONGLONG) != 8) { printf ("\n!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n"); printf(" CFITSIO did not find an 8-byte long integer data type.\n"); printf(" sizeof(LONGLONG) = %d\n",(int)sizeof(LONGLONG)); printf(" Please report this problem to the CFITSIO developers.\n"); printf( "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n"); FFUNLOCK; return(1); } /* register the standard I/O drivers that are always available */ /* 1--------------------disk file driver-----------------------*/ status = fits_register_driver("file://", file_init, file_shutdown, file_setoptions, file_getoptions, file_getversion, file_checkfile, file_open, file_create, #ifdef HAVE_FTRUNCATE file_truncate, #else NULL, /* no file truncate function */ #endif file_close, file_remove, file_size, file_flush, file_seek, file_read, file_write); if (status) { ffpmsg("failed to register the file:// driver (init_cfitsio)"); FFUNLOCK; return(status); } /* 2------------ output temporary memory file driver ----------------*/ status = fits_register_driver("mem://", mem_init, mem_shutdown, mem_setoptions, mem_getoptions, mem_getversion, NULL, /* checkfile not needed */ NULL, /* open function not allowed */ mem_create, mem_truncate, mem_close_free, NULL, /* remove function not required */ mem_size, NULL, /* flush function not required */ mem_seek, mem_read, mem_write); if (status) { ffpmsg("failed to register the mem:// driver (init_cfitsio)"); FFUNLOCK; return(status); } /* 3--------------input pre-existing memory file driver----------------*/ status = fits_register_driver("memkeep://", NULL, mem_shutdown, mem_setoptions, mem_getoptions, mem_getversion, NULL, /* checkfile not needed */ NULL, /* file open driver function is not used */ NULL, /* create function not allowed */ mem_truncate, mem_close_keep, NULL, /* remove function not required */ mem_size, NULL, /* flush function not required */ mem_seek, mem_read, mem_write); if (status) { ffpmsg("failed to register the memkeep:// driver (init_cfitsio)"); FFUNLOCK; return(status); } /* 4-------------------stdin stream driver----------------------*/ /* the stdin stream is copied to memory then opened in memory */ status = fits_register_driver("stdin://", NULL, mem_shutdown, mem_setoptions, mem_getoptions, mem_getversion, stdin_checkfile, stdin_open, NULL, /* create function not allowed */ mem_truncate, mem_close_free, NULL, /* remove function not required */ mem_size, NULL, /* flush function not required */ mem_seek, mem_read, mem_write); if (status) { ffpmsg("failed to register the stdin:// driver (init_cfitsio)"); FFUNLOCK; return(status); } /* 5-------------------stdin file stream driver----------------------*/ /* the stdin stream is copied to a disk file then the disk file is opened */ status = fits_register_driver("stdinfile://", NULL, mem_shutdown, mem_setoptions, mem_getoptions, mem_getversion, NULL, /* checkfile not needed */ stdin_open, NULL, /* create function not allowed */ #ifdef HAVE_FTRUNCATE file_truncate, #else NULL, /* no file truncate function */ #endif file_close, file_remove, file_size, file_flush, file_seek, file_read, file_write); if (status) { ffpmsg("failed to register the stdinfile:// driver (init_cfitsio)"); FFUNLOCK; return(status); } /* 6-----------------------stdout stream driver------------------*/ status = fits_register_driver("stdout://", NULL, mem_shutdown, mem_setoptions, mem_getoptions, mem_getversion, NULL, /* checkfile not needed */ NULL, /* open function not required */ mem_create, mem_truncate, stdout_close, NULL, /* remove function not required */ mem_size, NULL, /* flush function not required */ mem_seek, mem_read, mem_write); if (status) { ffpmsg("failed to register the stdout:// driver (init_cfitsio)"); FFUNLOCK; return(status); } /* 7------------------iraf disk file to memory driver -----------*/ status = fits_register_driver("irafmem://", NULL, mem_shutdown, mem_setoptions, mem_getoptions, mem_getversion, NULL, /* checkfile not needed */ mem_iraf_open, NULL, /* create function not required */ mem_truncate, mem_close_free, NULL, /* remove function not required */ mem_size, NULL, /* flush function not required */ mem_seek, mem_read, mem_write); if (status) { ffpmsg("failed to register the irafmem:// driver (init_cfitsio)"); FFUNLOCK; return(status); } /* 8------------------raw binary file to memory driver -----------*/ status = fits_register_driver("rawfile://", NULL, mem_shutdown, mem_setoptions, mem_getoptions, mem_getversion, NULL, /* checkfile not needed */ mem_rawfile_open, NULL, /* create function not required */ mem_truncate, mem_close_free, NULL, /* remove function not required */ mem_size, NULL, /* flush function not required */ mem_seek, mem_read, mem_write); if (status) { ffpmsg("failed to register the rawfile:// driver (init_cfitsio)"); FFUNLOCK; return(status); } /* 9------------------compressed disk file to memory driver -----------*/ status = fits_register_driver("compress://", NULL, mem_shutdown, mem_setoptions, mem_getoptions, mem_getversion, NULL, /* checkfile not needed */ mem_compress_open, NULL, /* create function not required */ mem_truncate, mem_close_free, NULL, /* remove function not required */ mem_size, NULL, /* flush function not required */ mem_seek, mem_read, mem_write); if (status) { ffpmsg("failed to register the compress:// driver (init_cfitsio)"); FFUNLOCK; return(status); } /* 10------------------compressed disk file to memory driver -----------*/ /* Identical to compress://, except it allows READWRITE access */ status = fits_register_driver("compressmem://", NULL, mem_shutdown, mem_setoptions, mem_getoptions, mem_getversion, NULL, /* checkfile not needed */ mem_compress_openrw, NULL, /* create function not required */ mem_truncate, mem_close_free, NULL, /* remove function not required */ mem_size, NULL, /* flush function not required */ mem_seek, mem_read, mem_write); if (status) { ffpmsg("failed to register the compressmem:// driver (init_cfitsio)"); FFUNLOCK; return(status); } /* 11------------------compressed disk file to disk file driver -------*/ status = fits_register_driver("compressfile://", NULL, file_shutdown, file_setoptions, file_getoptions, file_getversion, NULL, /* checkfile not needed */ file_compress_open, file_create, #ifdef HAVE_FTRUNCATE file_truncate, #else NULL, /* no file truncate function */ #endif file_close, file_remove, file_size, file_flush, file_seek, file_read, file_write); if (status) { ffpmsg("failed to register the compressfile:// driver (init_cfitsio)"); FFUNLOCK; return(status); } /* 12---create file in memory, then compress it to disk file on close--*/ status = fits_register_driver("compressoutfile://", NULL, mem_shutdown, mem_setoptions, mem_getoptions, mem_getversion, NULL, /* checkfile not needed */ NULL, /* open function not allowed */ mem_create_comp, mem_truncate, mem_close_comp, file_remove, /* delete existing compressed disk file */ mem_size, NULL, /* flush function not required */ mem_seek, mem_read, mem_write); if (status) { ffpmsg( "failed to register the compressoutfile:// driver (init_cfitsio)"); FFUNLOCK; return(status); } /* Register Optional drivers */ #ifdef HAVE_NET_SERVICES /* 13--------------------root driver-----------------------*/ status = fits_register_driver("root://", root_init, root_shutdown, root_setoptions, root_getoptions, root_getversion, NULL, /* checkfile not needed */ root_open, root_create, NULL, /* No truncate possible */ root_close, NULL, /* No remove possible */ root_size, /* no size possible */ root_flush, root_seek, /* Though will always succeed */ root_read, root_write); if (status) { ffpmsg("failed to register the root:// driver (init_cfitsio)"); FFUNLOCK; return(status); } /* 14--------------------http driver-----------------------*/ status = fits_register_driver("http://", NULL, mem_shutdown, mem_setoptions, mem_getoptions, mem_getversion, http_checkfile, http_open, NULL, /* create function not required */ mem_truncate, mem_close_free, NULL, /* remove function not required */ mem_size, NULL, /* flush function not required */ mem_seek, mem_read, mem_write); if (status) { ffpmsg("failed to register the http:// driver (init_cfitsio)"); FFUNLOCK; return(status); } /* 15--------------------http file driver-----------------------*/ status = fits_register_driver("httpfile://", NULL, file_shutdown, file_setoptions, file_getoptions, file_getversion, NULL, /* checkfile not needed */ http_file_open, file_create, #ifdef HAVE_FTRUNCATE file_truncate, #else NULL, /* no file truncate function */ #endif file_close, file_remove, file_size, file_flush, file_seek, file_read, file_write); if (status) { ffpmsg("failed to register the httpfile:// driver (init_cfitsio)"); FFUNLOCK; return(status); } /* 16--------------------http memory driver-----------------------*/ /* same as http:// driver, except memory file can be opened READWRITE */ status = fits_register_driver("httpmem://", NULL, mem_shutdown, mem_setoptions, mem_getoptions, mem_getversion, http_checkfile, http_file_open, /* this will simply call http_open */ NULL, /* create function not required */ mem_truncate, mem_close_free, NULL, /* remove function not required */ mem_size, NULL, /* flush function not required */ mem_seek, mem_read, mem_write); if (status) { ffpmsg("failed to register the httpmem:// driver (init_cfitsio)"); FFUNLOCK; return(status); } /* 17--------------------httpcompress file driver-----------------------*/ status = fits_register_driver("httpcompress://", NULL, mem_shutdown, mem_setoptions, mem_getoptions, mem_getversion, NULL, /* checkfile not needed */ http_compress_open, NULL, /* create function not required */ mem_truncate, mem_close_free, NULL, /* remove function not required */ mem_size, NULL, /* flush function not required */ mem_seek, mem_read, mem_write); if (status) { ffpmsg("failed to register the httpcompress:// driver (init_cfitsio)"); FFUNLOCK; return(status); } /* 18--------------------ftp driver-----------------------*/ status = fits_register_driver("ftp://", NULL, mem_shutdown, mem_setoptions, mem_getoptions, mem_getversion, ftp_checkfile, ftp_open, NULL, /* create function not required */ mem_truncate, mem_close_free, NULL, /* remove function not required */ mem_size, NULL, /* flush function not required */ mem_seek, mem_read, mem_write); if (status) { ffpmsg("failed to register the ftp:// driver (init_cfitsio)"); FFUNLOCK; return(status); } /* 19--------------------ftp file driver-----------------------*/ status = fits_register_driver("ftpfile://", NULL, file_shutdown, file_setoptions, file_getoptions, file_getversion, NULL, /* checkfile not needed */ ftp_file_open, file_create, #ifdef HAVE_FTRUNCATE file_truncate, #else NULL, /* no file truncate function */ #endif file_close, file_remove, file_size, file_flush, file_seek, file_read, file_write); if (status) { ffpmsg("failed to register the ftpfile:// driver (init_cfitsio)"); FFUNLOCK; return(status); } /* 20--------------------ftp mem driver-----------------------*/ /* same as ftp:// driver, except memory file can be opened READWRITE */ status = fits_register_driver("ftpmem://", NULL, mem_shutdown, mem_setoptions, mem_getoptions, mem_getversion, ftp_checkfile, ftp_file_open, /* this will simply call ftp_open */ NULL, /* create function not required */ mem_truncate, mem_close_free, NULL, /* remove function not required */ mem_size, NULL, /* flush function not required */ mem_seek, mem_read, mem_write); if (status) { ffpmsg("failed to register the ftpmem:// driver (init_cfitsio)"); FFUNLOCK; return(status); } /* 21--------------------ftp compressed file driver------------------*/ status = fits_register_driver("ftpcompress://", NULL, mem_shutdown, mem_setoptions, mem_getoptions, mem_getversion, NULL, /* checkfile not needed */ ftp_compress_open, 0, /* create function not required */ mem_truncate, mem_close_free, 0, /* remove function not required */ mem_size, 0, /* flush function not required */ mem_seek, mem_read, mem_write); if (status) { ffpmsg("failed to register the ftpcompress:// driver (init_cfitsio)"); FFUNLOCK; return(status); } /* === End of net drivers section === */ #endif /* ==================== SHARED MEMORY DRIVER SECTION ======================= */ #ifdef HAVE_SHMEM_SERVICES /* 22--------------------shared memory driver-----------------------*/ status = fits_register_driver("shmem://", smem_init, smem_shutdown, smem_setoptions, smem_getoptions, smem_getversion, NULL, /* checkfile not needed */ smem_open, smem_create, NULL, /* truncate file not supported yet */ smem_close, smem_remove, smem_size, smem_flush, smem_seek, smem_read, smem_write ); if (status) { ffpmsg("failed to register the shmem:// driver (init_cfitsio)"); FFUNLOCK; return(status); } #endif /* ==================== END OF SHARED MEMORY DRIVER SECTION ================ */ #ifdef HAVE_GSIFTP /* 23--------------------gsiftp driver-----------------------*/ status = fits_register_driver("gsiftp://", gsiftp_init, gsiftp_shutdown, gsiftp_setoptions, gsiftp_getoptions, gsiftp_getversion, gsiftp_checkfile, gsiftp_open, gsiftp_create, #ifdef HAVE_FTRUNCATE gsiftp_truncate, #else NULL, #endif gsiftp_close, NULL, /* remove function not yet implemented */ gsiftp_size, gsiftp_flush, gsiftp_seek, gsiftp_read, gsiftp_write); if (status) { ffpmsg("failed to register the gsiftp:// driver (init_cfitsio)"); FFUNLOCK; return(status); } #endif /* 24---------------stdin and stdout stream driver-------------------*/ status = fits_register_driver("stream://", NULL, NULL, NULL, NULL, NULL, NULL, stream_open, stream_create, NULL, /* no stream truncate function */ stream_close, NULL, /* no stream remove */ stream_size, stream_flush, stream_seek, stream_read, stream_write); if (status) { ffpmsg("failed to register the stream:// driver (init_cfitsio)"); FFUNLOCK; return(status); } /* reset flag. Any other threads will now not need to call this routine */ need_to_initialize = 0; FFUNLOCK; return(status); } /*--------------------------------------------------------------------------*/ int fits_register_driver(char *prefix, int (*init)(void), int (*shutdown)(void), int (*setoptions)(int option), int (*getoptions)(int *options), int (*getversion)(int *version), int (*checkfile) (char *urltype, char *infile, char *outfile), int (*open)(char *filename, int rwmode, int *driverhandle), int (*create)(char *filename, int *driverhandle), int (*truncate)(int driverhandle, LONGLONG filesize), int (*close)(int driverhandle), int (*fremove)(char *filename), int (*size)(int driverhandle, LONGLONG *size), int (*flush)(int driverhandle), int (*seek)(int driverhandle, LONGLONG offset), int (*read) (int driverhandle, void *buffer, long nbytes), int (*write)(int driverhandle, void *buffer, long nbytes) ) /* register all the functions needed to support an I/O driver */ { int status; if (no_of_drivers < 0 ) { /* This is bad. looks like memory has been corrupted. */ ffpmsg("Vital CFITSIO parameters held in memory have been corrupted!!"); ffpmsg("Fatal condition detected in fits_register_driver."); return(TOO_MANY_DRIVERS); } if (no_of_drivers + 1 > MAX_DRIVERS) return(TOO_MANY_DRIVERS); if (prefix == NULL) return(BAD_URL_PREFIX); if (init != NULL) { status = (*init)(); /* initialize the driver */ if (status) return(status); } /* fill in data in table */ strncpy(driverTable[no_of_drivers].prefix, prefix, MAX_PREFIX_LEN); driverTable[no_of_drivers].prefix[MAX_PREFIX_LEN - 1] = 0; driverTable[no_of_drivers].init = init; driverTable[no_of_drivers].shutdown = shutdown; driverTable[no_of_drivers].setoptions = setoptions; driverTable[no_of_drivers].getoptions = getoptions; driverTable[no_of_drivers].getversion = getversion; driverTable[no_of_drivers].checkfile = checkfile; driverTable[no_of_drivers].open = open; driverTable[no_of_drivers].create = create; driverTable[no_of_drivers].truncate = truncate; driverTable[no_of_drivers].close = close; driverTable[no_of_drivers].remove = fremove; driverTable[no_of_drivers].size = size; driverTable[no_of_drivers].flush = flush; driverTable[no_of_drivers].seek = seek; driverTable[no_of_drivers].read = read; driverTable[no_of_drivers].write = write; no_of_drivers++; /* increment the number of drivers */ return(0); } /*--------------------------------------------------------------------------*/ /* fits_parse_input_url */ int ffiurl(char *url, /* input filename */ char *urltype, /* e.g., 'file://', 'http://', 'mem://' */ char *infilex, /* root filename (may be complete path) */ char *outfile, /* optional output file name */ char *extspec, /* extension spec: +n or [extname, extver] */ char *rowfilterx, /* boolean row filter expression */ char *binspec, /* histogram binning specifier */ char *colspec, /* column or keyword modifier expression */ int *status) /* parse the input URL into its basic components. This routine does not support the pixfilter or compspec components. */ { return ffifile2(url, urltype, infilex, outfile, extspec, rowfilterx, binspec, colspec, 0, 0, status); } /*--------------------------------------------------------------------------*/ /* fits_parse_input_file */ int ffifile(char *url, /* input filename */ char *urltype, /* e.g., 'file://', 'http://', 'mem://' */ char *infilex, /* root filename (may be complete path) */ char *outfile, /* optional output file name */ char *extspec, /* extension spec: +n or [extname, extver] */ char *rowfilterx, /* boolean row filter expression */ char *binspec, /* histogram binning specifier */ char *colspec, /* column or keyword modifier expression */ char *pixfilter, /* pixel filter expression */ int *status) /* fits_parse_input_filename parse the input URL into its basic components. This routine does not support the compspec component. */ { return ffifile2(url, urltype, infilex, outfile, extspec, rowfilterx, binspec, colspec, pixfilter, 0, status); } /*--------------------------------------------------------------------------*/ int ffifile2(char *url, /* input filename */ char *urltype, /* e.g., 'file://', 'http://', 'mem://' */ char *infilex, /* root filename (may be complete path) */ char *outfile, /* optional output file name */ char *extspec, /* extension spec: +n or [extname, extver] */ char *rowfilterx, /* boolean row filter expression */ char *binspec, /* histogram binning specifier */ char *colspec, /* column or keyword modifier expression */ char *pixfilter, /* pixel filter expression */ char *compspec, /* image compression specification */ int *status) /* fits_parse_input_filename parse the input URL into its basic components. This routine is big and ugly and should be redesigned someday! */ { int ii, jj, slen, infilelen, plus_ext = 0, collen; char *ptr1, *ptr2, *ptr3, *ptr4, *tmptr; int hasAt, hasDot, hasOper, followingOper, spaceTerm, rowFilter; int colStart, binStart, pixStart, compStart; /* must have temporary variable for these, in case inputs are NULL */ char *infile; char *rowfilter; char *tmpstr; if (*status > 0) return(*status); /* Initialize null strings */ if (infilex) *infilex = '\0'; if (urltype) *urltype = '\0'; if (outfile) *outfile = '\0'; if (extspec) *extspec = '\0'; if (binspec) *binspec = '\0'; if (colspec) *colspec = '\0'; if (rowfilterx) *rowfilterx = '\0'; if (pixfilter) *pixfilter = '\0'; if (compspec) *compspec = '\0'; slen = strlen(url); if (slen == 0) /* blank filename ?? */ return(*status); /* allocate memory for 3 strings, each as long as the input url */ infile = (char *) calloc(3, slen + 1); if (!infile) return(*status = MEMORY_ALLOCATION); rowfilter = &infile[slen + 1]; tmpstr = &rowfilter[slen + 1]; ptr1 = url; /* -------------------------------------------------------- */ /* get urltype (e.g., file://, ftp://, http://, etc.) */ /* --------------------------------------------------------- */ if (*ptr1 == '-' && ( *(ptr1 +1) == 0 || *(ptr1 +1) == ' ' || *(ptr1 +1) == '[' || *(ptr1 +1) == '(' ) ) { /* "-" means read file from stdin. Also support "- ", */ /* "-[extname]" and '-(outfile.fits)" but exclude disk file */ /* names that begin with a minus sign, e.g., "-55d33m.fits" */ if (urltype) strcat(urltype, "stdin://"); ptr1++; } else if (!strncasecmp(ptr1, "stdin", 5)) { if (urltype) strcat(urltype, "stdin://"); ptr1 = ptr1 + 5; } else { ptr2 = strstr(ptr1, "://"); ptr3 = strstr(ptr1, "(" ); if (ptr3 && (ptr3 < ptr2) ) { /* the urltype follows a '(' character, so it must apply */ /* to the output file, and is not the urltype of the input file */ ptr2 = 0; /* so reset pointer to zero */ } if (ptr2) /* copy the explicit urltype string */ { if (urltype) strncat(urltype, ptr1, ptr2 - ptr1 + 3); ptr1 = ptr2 + 3; } else if (!strncmp(ptr1, "ftp:", 4) ) { /* the 2 //'s are optional */ if (urltype) strcat(urltype, "ftp://"); ptr1 += 4; } else if (!strncmp(ptr1, "gsiftp:", 7) ) { /* the 2 //'s are optional */ if (urltype) strcat(urltype, "gsiftp://"); ptr1 += 7; } else if (!strncmp(ptr1, "http:", 5) ) { /* the 2 //'s are optional */ if (urltype) strcat(urltype, "http://"); ptr1 += 5; } else if (!strncmp(ptr1, "mem:", 4) ) { /* the 2 //'s are optional */ if (urltype) strcat(urltype, "mem://"); ptr1 += 4; } else if (!strncmp(ptr1, "shmem:", 6) ) { /* the 2 //'s are optional */ if (urltype) strcat(urltype, "shmem://"); ptr1 += 6; } else if (!strncmp(ptr1, "file:", 5) ) { /* the 2 //'s are optional */ if (urltype) strcat(urltype, "file://"); ptr1 += 5; } else /* assume file driver */ { if (urltype) strcat(urltype, "file://"); } } /* ---------------------------------------------------------- If this is a http:// type file, then the cgi file name could include the '[' character, which should not be interpreted as part of CFITSIO's Extended File Name Syntax. Test for this case by seeing if the last character is a ']' or ')'. If it is not, then just treat the whole input string as the file name and do not attempt to interprete the name using the extended filename syntax. ----------------------------------------------------------- */ if (urltype && !strncmp(urltype, "http://", 7) ) { /* test for opening parenthesis or bracket in the file name */ if( strchr(ptr1, '(' ) || strchr(ptr1, '[' ) ) { slen = strlen(ptr1); ptr3 = ptr1 + slen - 1; while (*ptr3 == ' ') /* ignore trailing blanks */ ptr3--; if (*ptr3 != ']' && *ptr3 != ')' ) { /* name doesn't end with a ']' or ')' so don't try */ /* to parse this unusual string (may be cgi string) */ if (infilex) { if (strlen(ptr1) > FLEN_FILENAME - 1) { ffpmsg("Name of file is too long."); return(*status = URL_PARSE_ERROR); } strcpy(infilex, ptr1); } free(infile); return(*status); } } } /* ---------------------------------------------------------- Look for VMS style filenames like: disk:[directory.subdirectory]filename.ext, or [directory.subdirectory]filename.ext Check if the first character is a '[' and urltype != stdin or if there is a ':[' string in the remaining url string. If so, then need to move past this bracket character before search for the opening bracket of a filter specification. ----------------------------------------------------------- */ tmptr = ptr1; if (*ptr1 == '[') { if (*url != '-') tmptr = ptr1 + 1; /* this bracket encloses a VMS directory name */ } else { tmptr = strstr(ptr1, ":["); if (tmptr) /* these 2 chars are part of the VMS disk and directory */ tmptr += 2; else tmptr = ptr1; } /* ------------------------ */ /* get the input file name */ /* ------------------------ */ ptr2 = strchr(tmptr, '('); /* search for opening parenthesis ( */ ptr3 = strchr(tmptr, '['); /* search for opening bracket [ */ if (ptr2 == ptr3) /* simple case: no [ or ( in the file name */ { strcat(infile, ptr1); } else if (!ptr3 || /* no bracket, so () enclose output file name */ (ptr2 && (ptr2 < ptr3)) ) /* () enclose output name before bracket */ { strncat(infile, ptr1, ptr2 - ptr1); ptr2++; ptr1 = strchr(ptr2, ')' ); /* search for closing ) */ if (!ptr1) { free(infile); return(*status = URL_PARSE_ERROR); /* error, no closing ) */ } if (outfile) { if (ptr1 - ptr2 > FLEN_FILENAME - 1) { free(infile); return(*status = URL_PARSE_ERROR); } strncat(outfile, ptr2, ptr1 - ptr2); } /* the opening [ could have been part of output name, */ /* e.g., file(out[compress])[3][#row > 5] */ /* so search again for opening bracket following the closing ) */ ptr3 = strchr(ptr1, '['); } else /* bracket comes first, so there is no output name */ { strncat(infile, ptr1, ptr3 - ptr1); } /* strip off any trailing blanks in the names */ slen = strlen(infile); while ( (--slen) > 0 && infile[slen] == ' ') infile[slen] = '\0'; if (outfile) { slen = strlen(outfile); while ( (--slen) > 0 && outfile[slen] == ' ') outfile[slen] = '\0'; } /* --------------------------------------------- */ /* check if this is an IRAF file (.imh extension */ /* --------------------------------------------- */ ptr4 = strstr(infile, ".imh"); /* did the infile name end with ".imh" ? */ if (ptr4 && (*(ptr4 + 4) == '\0')) { if (urltype) strcpy(urltype, "irafmem://"); } /* --------------------------------------------- */ /* check if the 'filename+n' convention has been */ /* used to specifiy which HDU number to open */ /* --------------------------------------------- */ jj = strlen(infile); for (ii = jj - 1; ii >= 0; ii--) { if (infile[ii] == '+') /* search backwards for '+' sign */ break; } if (ii > 0 && (jj - ii) < 7) /* limit extension numbers to 5 digits */ { infilelen = ii; ii++; ptr1 = infile+ii; /* pointer to start of sequence */ for (; ii < jj; ii++) { if (!isdigit((int) infile[ii] ) ) /* are all the chars digits? */ break; } if (ii == jj) { /* yes, the '+n' convention was used. Copy */ /* the digits to the output extspec string. */ plus_ext = 1; if (extspec) { if (jj - infilelen > FLEN_FILENAME - 1) { free(infile); return(*status = URL_PARSE_ERROR); } strncpy(extspec, ptr1, jj - infilelen); } infile[infilelen] = '\0'; /* delete the extension number */ } } /* -------------------------------------------------------------------- */ /* if '*' was given for the output name expand it to the root file name */ /* -------------------------------------------------------------------- */ if (outfile && outfile[0] == '*') { /* scan input name backwards to the first '/' character */ for (ii = jj - 1; ii >= 0; ii--) { if (infile[ii] == '/' || ii == 0) { if (strlen(&infile[ii + 1]) > FLEN_FILENAME - 1) { free(infile); return(*status = URL_PARSE_ERROR); } strcpy(outfile, &infile[ii + 1]); break; } } } /* ------------------------------------------ */ /* copy strings from local copy to the output */ /* ------------------------------------------ */ if (infilex) { if (strlen(infile) > FLEN_FILENAME - 1) { free(infile); return(*status = URL_PARSE_ERROR); } strcpy(infilex, infile); } /* ---------------------------------------------------------- */ /* if no '[' character in the input string, then we are done. */ /* ---------------------------------------------------------- */ if (!ptr3) { free(infile); return(*status); } /* ------------------------------------------- */ /* see if [ extension specification ] is given */ /* ------------------------------------------- */ if (!plus_ext) /* extension no. not already specified? Then */ /* first brackets must enclose extension name or # */ /* or it encloses a image subsection specification */ /* or a raw binary image specifier */ /* or a image compression specifier */ /* Or, the extension specification may have been */ /* omitted and we have to guess what the user intended */ { ptr1 = ptr3 + 1; /* pointer to first char after the [ */ ptr2 = strchr(ptr1, ']' ); /* search for closing ] */ if (!ptr2) { ffpmsg("input file URL is missing closing bracket ']'"); free(infile); return(*status = URL_PARSE_ERROR); /* error, no closing ] */ } /* ---------------------------------------------- */ /* First, test if this is a rawfile specifier */ /* which looks something like: '[ib512,512:2880]' */ /* Test if first character is b,i,j,d,r,f, or u, */ /* and optional second character is b or l, */ /* followed by one or more digits, */ /* finally followed by a ',', ':', or ']' */ /* ---------------------------------------------- */ if (*ptr1 == 'b' || *ptr1 == 'B' || *ptr1 == 'i' || *ptr1 == 'I' || *ptr1 == 'j' || *ptr1 == 'J' || *ptr1 == 'd' || *ptr1 == 'D' || *ptr1 == 'r' || *ptr1 == 'R' || *ptr1 == 'f' || *ptr1 == 'F' || *ptr1 == 'u' || *ptr1 == 'U') { /* next optional character may be a b or l (for Big or Little) */ ptr1++; if (*ptr1 == 'b' || *ptr1 == 'B' || *ptr1 == 'l' || *ptr1 == 'L') ptr1++; if (isdigit((int) *ptr1)) /* must have at least 1 digit */ { while (isdigit((int) *ptr1)) ptr1++; /* skip over digits */ if (*ptr1 == ',' || *ptr1 == ':' || *ptr1 == ']' ) { /* OK, this looks like a rawfile specifier */ if (urltype) { if (strstr(urltype, "stdin") ) strcpy(urltype, "rawstdin://"); else strcpy(urltype, "rawfile://"); } /* append the raw array specifier to infilex */ if (infilex) { if (strlen(infilex) + strlen(ptr3) > FLEN_FILENAME - 1) { free(infile); return(*status = URL_PARSE_ERROR); } strcat(infilex, ptr3); ptr1 = strchr(infilex, ']'); /* find the closing ] char */ if (ptr1) *(ptr1 + 1) = '\0'; /* terminate string after the ] */ } if (extspec) strcpy(extspec, "0"); /* the 0 ext number is implicit */ tmptr = strchr(ptr2 + 1, '[' ); /* search for another [ char */ /* copy any remaining characters into rowfilterx */ if (tmptr && rowfilterx) { if (strlen(rowfilterx) + strlen(tmptr + 1) > FLEN_FILENAME -1) { free(infile); return(*status = URL_PARSE_ERROR); } strcat(rowfilterx, tmptr + 1); tmptr = strchr(rowfilterx, ']' ); /* search for closing ] */ if (tmptr) *tmptr = '\0'; /* overwrite the ] with null terminator */ } free(infile); /* finished parsing, so return */ return(*status); } } } /* end of rawfile specifier test */ /* -------------------------------------------------------- */ /* Not a rawfile, so next, test if this is an image section */ /* i.e., an integer followed by a ':' or a '*' or '-*' */ /* -------------------------------------------------------- */ ptr1 = ptr3 + 1; /* reset pointer to first char after the [ */ tmptr = ptr1; while (*tmptr == ' ') tmptr++; /* skip leading blanks */ while (isdigit((int) *tmptr)) tmptr++; /* skip over leading digits */ if (*tmptr == ':' || *tmptr == '*' || *tmptr == '-') { /* this is an image section specifier */ strcat(rowfilter, ptr3); /* don't want to assume 0 extension any more; may imply an image extension. if (extspec) strcpy(extspec, "0"); */ } else { /* ----------------------------------------------------------------- Not an image section or rawfile spec so may be an extension spec. Examples of valid extension specifiers: [3] - 3rd extension; 0 = primary array [events] - events extension [events, 2] - events extension, with EXTVER = 2 [events,2] - spaces are optional [events, 3, b] - same as above, plus XTENSION = 'BINTABLE' [PICS; colName(12)] - an image in row 12 of the colName column in the PICS table extension [PICS; colName(exposure > 1000)] - as above, but find image in first row with with exposure column value > 1000. [Rate Table] - extension name can contain spaces! [Rate Table;colName(exposure>1000)] Examples of other types of specifiers (Not extension specifiers) [bin] !!! this is ambiguous, and can't be distinguished from a valid extension specifier [bini X=1:512:16] (also binb, binj, binr, and bind are allowed) [binr (X,Y) = 5] [bin @binfilter.txt] [col Time;rate] [col PI=PHA * 1.1] [col -Time; status] [X > 5] [X>5] [@filter.txt] [StatusCol] !!! this is ambiguous, and can't be distinguished from a valid extension specifier [StatusCol==0] [StatusCol || x>6] [gtifilter()] [regfilter("region.reg")] [compress Rice] There will always be some ambiguity between an extension name and a boolean row filtering expression, (as in a couple of the above examples). If there is any doubt, the expression should be treated as an extension specification; The user can always add an explicit expression specifier to override this interpretation. The following decision logic will be used: 1) locate the first token, terminated with a space, comma, semi-colon, or closing bracket. 2) the token is not part of an extension specifier if any of the following is true: - if the token begins with '@' and contains a '.' - if the token contains an operator: = > < || && - if the token begins with "gtifilter(" or "regfilter(" - if the token is terminated by a space and is followed by additional characters (not a ']') AND any of the following: - the token is 'col' - the token is 3 or 4 chars long and begins with 'bin' - the second token begins with an operator: ! = < > | & + - * / % 3) otherwise, the string is assumed to be an extension specifier ----------------------------------------------------------------- */ tmptr = ptr1; while(*tmptr == ' ') tmptr++; hasAt = 0; hasDot = 0; hasOper = 0; followingOper = 0; spaceTerm = 0; rowFilter = 0; colStart = 0; binStart = 0; pixStart = 0; compStart = 0; if (*tmptr == '@') /* test for leading @ symbol */ hasAt = 1; if ( !strncasecmp(tmptr, "col ", 4) ) colStart = 1; if ( !strncasecmp(tmptr, "bin", 3) ) binStart = 1; if ( !strncasecmp(tmptr, "pix", 3) ) pixStart = 1; if ( !strncasecmp(tmptr, "compress ", 9) || !strncasecmp(tmptr, "compress]", 9) ) compStart = 1; if ( !strncasecmp(tmptr, "gtifilter(", 10) || !strncasecmp(tmptr, "regfilter(", 10) ) { rowFilter = 1; } else { /* parse the first token of the expression */ for (ii = 0; ii < ptr2 - ptr1 + 1; ii++, tmptr++) { if (*tmptr == '.') hasDot = 1; else if (*tmptr == '=' || *tmptr == '>' || *tmptr == '<' || (*tmptr == '|' && *(tmptr+1) == '|') || (*tmptr == '&' && *(tmptr+1) == '&') ) hasOper = 1; else if (*tmptr == ',' || *tmptr == ';' || *tmptr == ']') { break; } else if (*tmptr == ' ') /* a space char? */ { while(*tmptr == ' ') /* skip spaces */ tmptr++; if (*tmptr == ']') /* is this the end? */ break; spaceTerm = 1; /* 1st token is terminated by space */ /* test if this is a column or binning specifier */ if (colStart || (ii <= 4 && (binStart || pixStart)) ) rowFilter = 1; else { /* check if next character is an operator */ if (*tmptr == '=' || *tmptr == '>' || *tmptr == '<' || *tmptr == '|' || *tmptr == '&' || *tmptr == '!' || *tmptr == '+' || *tmptr == '-' || *tmptr == '*' || *tmptr == '/' || *tmptr == '%') followingOper = 1; } break; } } } /* test if this is NOT an extension specifier */ if ( rowFilter || (pixStart && spaceTerm) || (hasAt && hasDot) || hasOper || compStart || (spaceTerm && followingOper) ) { /* this is (probably) not an extension specifier */ /* so copy all chars to filter spec string */ strcat(rowfilter, ptr3); } else { /* this appears to be a legit extension specifier */ /* copy the extension specification */ if (extspec) { if (ptr2 - ptr1 > FLEN_FILENAME - 1) { free(infile); return(*status = URL_PARSE_ERROR); } strncat(extspec, ptr1, ptr2 - ptr1); } /* copy any remaining chars to filter spec string */ strcat(rowfilter, ptr2 + 1); } } } /* end of if (!plus_ext) */ else { /* ------------------------------------------------------------------ */ /* already have extension, so this must be a filter spec of some sort */ /* ------------------------------------------------------------------ */ strcat(rowfilter, ptr3); } /* strip off any trailing blanks from filter */ slen = strlen(rowfilter); while ( (--slen) >= 0 && rowfilter[slen] == ' ') rowfilter[slen] = '\0'; if (!rowfilter[0]) { free(infile); return(*status); /* nothing left to parse */ } /* ------------------------------------------------ */ /* does the filter contain a binning specification? */ /* ------------------------------------------------ */ ptr1 = strstr(rowfilter, "[bin"); /* search for "[bin" */ if (!ptr1) ptr1 = strstr(rowfilter, "[BIN"); /* search for "[BIN" */ if (!ptr1) ptr1 = strstr(rowfilter, "[Bin"); /* search for "[Bin" */ if (ptr1) { ptr2 = ptr1 + 4; /* end of the '[bin' string */ if (*ptr2 == 'b' || *ptr2 == 'i' || *ptr2 == 'j' || *ptr2 == 'r' || *ptr2 == 'd') ptr2++; /* skip the datatype code letter */ if ( *ptr2 != ' ' && *ptr2 != ']') ptr1 = NULL; /* bin string must be followed by space or ] */ } if (ptr1) { /* found the binning string */ if (binspec) { if (strlen(ptr1 +1) > FLEN_FILENAME - 1) { free(infile); return(*status = URL_PARSE_ERROR); } strcpy(binspec, ptr1 + 1); ptr2 = strchr(binspec, ']'); if (ptr2) /* terminate the binning filter */ { *ptr2 = '\0'; if ( *(--ptr2) == ' ') /* delete trailing spaces */ *ptr2 = '\0'; } else { ffpmsg("input file URL is missing closing bracket ']'"); ffpmsg(rowfilter); free(infile); return(*status = URL_PARSE_ERROR); /* error, no closing ] */ } } /* delete the binning spec from the row filter string */ ptr2 = strchr(ptr1, ']'); strcpy(tmpstr, ptr2+1); /* copy any chars after the binspec */ strcpy(ptr1, tmpstr); /* overwrite binspec */ } /* --------------------------------------------------------- */ /* does the filter contain a column selection specification? */ /* --------------------------------------------------------- */ ptr1 = strstr(rowfilter, "[col "); if (!ptr1) { ptr1 = strstr(rowfilter, "[COL "); if (!ptr1) ptr1 = strstr(rowfilter, "[Col "); } if (ptr1) { /* find the end of the column specifier */ ptr2 = ptr1 + 5; while (*ptr2 != ']') { if (*ptr2 == '\0') { ffpmsg("input file URL is missing closing bracket ']'"); free(infile); return(*status = URL_PARSE_ERROR); /* error, no closing ] */ } if (*ptr2 == '\'') /* start of a literal string */ { ptr2 = strchr(ptr2 + 1, '\''); /* find closing quote */ if (!ptr2) { ffpmsg ("literal string in input file URL is missing closing single quote"); free(infile); return(*status = URL_PARSE_ERROR); /* error, no closing ] */ } } if (*ptr2 == '[') /* set of nested square brackets */ { ptr2 = strchr(ptr2 + 1, ']'); /* find closing bracket */ if (!ptr2) { ffpmsg ("nested brackets in input file URL is missing closing bracket"); free(infile); return(*status = URL_PARSE_ERROR); /* error, no closing ] */ } } ptr2++; /* continue search for the closing bracket character */ } collen = ptr2 - ptr1 - 1; if (colspec) /* copy the column specifier to output string */ { if (collen > FLEN_FILENAME - 1) { free(infile); return(*status = URL_PARSE_ERROR); } strncpy(colspec, ptr1 + 1, collen); colspec[collen] = '\0'; while (colspec[--collen] == ' ') colspec[collen] = '\0'; /* strip trailing blanks */ } /* delete the column selection spec from the row filter string */ strcpy(tmpstr, ptr2 + 1); /* copy any chars after the colspec */ strcpy(ptr1, tmpstr); /* overwrite binspec */ } /* --------------------------------------------------------- */ /* does the filter contain a pixel filter specification? */ /* --------------------------------------------------------- */ ptr1 = strstr(rowfilter, "[pix"); if (!ptr1) { ptr1 = strstr(rowfilter, "[PIX"); if (!ptr1) ptr1 = strstr(rowfilter, "[Pix"); } if (ptr1) { ptr2 = ptr1 + 4; /* end of the '[pix' string */ if (*ptr2 == 'b' || *ptr2 == 'i' || *ptr2 == 'j' || *ptr2 == 'B' || *ptr2 == 'I' || *ptr2 == 'J' || *ptr2 == 'r' || *ptr2 == 'd' || *ptr2 == 'R' || *ptr2 == 'D') ptr2++; /* skip the datatype code letter */ if (*ptr2 == '1') ptr2++; /* skip the single HDU indicator */ if ( *ptr2 != ' ') ptr1 = NULL; /* pix string must be followed by space */ } if (ptr1) { /* find the end of the pixel filter */ while (*ptr2 != ']') { if (*ptr2 == '\0') { ffpmsg("input file URL is missing closing bracket ']'"); free(infile); return(*status = URL_PARSE_ERROR); /* error, no closing ] */ } if (*ptr2 == '\'') /* start of a literal string */ { ptr2 = strchr(ptr2 + 1, '\''); /* find closing quote */ if (!ptr2) { ffpmsg ("literal string in input file URL is missing closing single quote"); free(infile); return(*status = URL_PARSE_ERROR); /* error, no closing ] */ } } if (*ptr2 == '[') /* set of nested square brackets */ { ptr2 = strchr(ptr2 + 1, ']'); /* find closing bracket */ if (!ptr2) { ffpmsg ("nested brackets in input file URL is missing closing bracket"); free(infile); return(*status = URL_PARSE_ERROR); /* error, no closing ] */ } } ptr2++; /* continue search for the closing bracket character */ } collen = ptr2 - ptr1 - 1; if (pixfilter) /* copy the column specifier to output string */ { if (collen > FLEN_FILENAME - 1) { free(infile); return(*status = URL_PARSE_ERROR); } strncpy(pixfilter, ptr1 + 1, collen); pixfilter[collen] = '\0'; while (pixfilter[--collen] == ' ') pixfilter[collen] = '\0'; /* strip trailing blanks */ } /* delete the pixel filter from the row filter string */ strcpy(tmpstr, ptr2 + 1); /* copy any chars after the pixel filter */ strcpy(ptr1, tmpstr); /* overwrite binspec */ } /* ------------------------------------------------------------ */ /* does the filter contain an image compression specification? */ /* ------------------------------------------------------------ */ ptr1 = strstr(rowfilter, "[compress"); if (ptr1) { ptr2 = ptr1 + 9; /* end of the '[compress' string */ if ( *ptr2 != ' ' && *ptr2 != ']') ptr1 = NULL; /* compress string must be followed by space or ] */ } if (ptr1) { /* found the compress string */ if (compspec) { if (strlen(ptr1 +1) > FLEN_FILENAME - 1) { free(infile); return(*status = URL_PARSE_ERROR); } strcpy(compspec, ptr1 + 1); ptr2 = strchr(compspec, ']'); if (ptr2) /* terminate the binning filter */ { *ptr2 = '\0'; if ( *(--ptr2) == ' ') /* delete trailing spaces */ *ptr2 = '\0'; } else { ffpmsg("input file URL is missing closing bracket ']'"); ffpmsg(rowfilter); free(infile); return(*status = URL_PARSE_ERROR); /* error, no closing ] */ } } /* delete the compression spec from the row filter string */ ptr2 = strchr(ptr1, ']'); strcpy(tmpstr, ptr2+1); /* copy any chars after the binspec */ strcpy(ptr1, tmpstr); /* overwrite binspec */ } /* copy the remaining string to the rowfilter output... should only */ /* contain a rowfilter expression of the form "[expr]" */ if (rowfilterx && rowfilter[0]) { ptr2 = rowfilter + strlen(rowfilter) - 1; if( rowfilter[0]=='[' && *ptr2==']' ) { *ptr2 = '\0'; if (strlen(rowfilter + 1) > FLEN_FILENAME - 1) { free(infile); return(*status = URL_PARSE_ERROR); } strcpy(rowfilterx, rowfilter+1); } else { ffpmsg("input file URL lacks valid row filter expression"); *status = URL_PARSE_ERROR; } } free(infile); return(*status); } /*--------------------------------------------------------------------------*/ int ffexist(const char *infile, /* I - input filename or URL */ int *exists, /* O - 2 = a compressed version of file exists */ /* 1 = yes, disk file exists */ /* 0 = no, disk file could not be found */ /* -1 = infile is not a disk file (could */ /* be a http, ftp, gsiftp, smem, or stdin file) */ int *status) /* I/O status */ /* test if the input file specifier is an existing file on disk If the specified file can't be found, it then searches for a compressed version of the file. */ { FILE *diskfile; char rootname[FLEN_FILENAME]; char *ptr1; if (*status > 0) return(*status); /* strip off any extname or filters from the name */ ffrtnm( (char *)infile, rootname, status); ptr1 = strstr(rootname, "://"); if (ptr1 || *rootname == '-') { if (!strncmp(rootname, "file", 4) ) { ptr1 = ptr1 + 3; /* pointer to start of the disk file name */ } else { *exists = -1; /* this is not a disk file */ return (*status); } } else { ptr1 = rootname; } /* see if the disk file exists */ if (file_openfile(ptr1, 0, &diskfile)) { /* no, couldn't open file, so see if there is a compressed version */ if (file_is_compressed(ptr1) ) { *exists = 2; /* a compressed version of the file exists */ } else { *exists = 0; /* neither file nor compressed version exist */ } } else { /* yes, file exists */ *exists = 1; fclose(diskfile); } return(*status); } /*--------------------------------------------------------------------------*/ int ffrtnm(char *url, char *rootname, int *status) /* parse the input URL, returning the root name (filetype://basename). */ { int ii, jj, slen, infilelen; char *ptr1, *ptr2, *ptr3; char urltype[MAX_PREFIX_LEN]; char infile[FLEN_FILENAME]; if (*status > 0) return(*status); ptr1 = url; *rootname = '\0'; *urltype = '\0'; *infile = '\0'; /* get urltype (e.g., file://, ftp://, http://, etc.) */ if (*ptr1 == '-') /* "-" means read file from stdin */ { strcat(urltype, "-"); ptr1++; } else if (!strncmp(ptr1, "stdin", 5) || !strncmp(ptr1, "STDIN", 5)) { strcat(urltype, "-"); ptr1 = ptr1 + 5; } else { ptr2 = strstr(ptr1, "://"); ptr3 = strstr(ptr1, "(" ); if (ptr3 && (ptr3 < ptr2) ) { /* the urltype follows a '(' character, so it must apply */ /* to the output file, and is not the urltype of the input file */ ptr2 = 0; /* so reset pointer to zero */ } if (ptr2) /* copy the explicit urltype string */ { if (ptr2 - ptr1 + 3 > MAX_PREFIX_LEN - 1) { return(*status = URL_PARSE_ERROR); } strncat(urltype, ptr1, ptr2 - ptr1 + 3); ptr1 = ptr2 + 3; } else if (!strncmp(ptr1, "ftp:", 4) ) { /* the 2 //'s are optional */ strcat(urltype, "ftp://"); ptr1 += 4; } else if (!strncmp(ptr1, "gsiftp:", 7) ) { /* the 2 //'s are optional */ strcat(urltype, "gsiftp://"); ptr1 += 7; } else if (!strncmp(ptr1, "http:", 5) ) { /* the 2 //'s are optional */ strcat(urltype, "http://"); ptr1 += 5; } else if (!strncmp(ptr1, "mem:", 4) ) { /* the 2 //'s are optional */ strcat(urltype, "mem://"); ptr1 += 4; } else if (!strncmp(ptr1, "shmem:", 6) ) { /* the 2 //'s are optional */ strcat(urltype, "shmem://"); ptr1 += 6; } else if (!strncmp(ptr1, "file:", 5) ) { /* the 2 //'s are optional */ ptr1 += 5; } /* else assume file driver */ } /* get the input file name */ ptr2 = strchr(ptr1, '('); /* search for opening parenthesis ( */ ptr3 = strchr(ptr1, '['); /* search for opening bracket [ */ if (ptr2 == ptr3) /* simple case: no [ or ( in the file name */ { if (strlen(ptr1) > FLEN_FILENAME - 1) { return(*status = URL_PARSE_ERROR); } strcat(infile, ptr1); } else if (!ptr3) /* no bracket, so () enclose output file name */ { if (ptr2 - ptr1 > FLEN_FILENAME - 1) { return(*status = URL_PARSE_ERROR); } strncat(infile, ptr1, ptr2 - ptr1); ptr2++; ptr1 = strchr(ptr2, ')' ); /* search for closing ) */ if (!ptr1) return(*status = URL_PARSE_ERROR); /* error, no closing ) */ } else if (ptr2 && (ptr2 < ptr3)) /* () enclose output name before bracket */ { if (ptr2 - ptr1 > FLEN_FILENAME - 1) { return(*status = URL_PARSE_ERROR); } strncat(infile, ptr1, ptr2 - ptr1); ptr2++; ptr1 = strchr(ptr2, ')' ); /* search for closing ) */ if (!ptr1) return(*status = URL_PARSE_ERROR); /* error, no closing ) */ } else /* bracket comes first, so there is no output name */ { if (ptr3 - ptr1 > FLEN_FILENAME - 1) { return(*status = URL_PARSE_ERROR); } strncat(infile, ptr1, ptr3 - ptr1); } /* strip off any trailing blanks in the names */ slen = strlen(infile); for (ii = slen - 1; ii > 0; ii--) { if (infile[ii] == ' ') infile[ii] = '\0'; else break; } /* --------------------------------------------- */ /* check if the 'filename+n' convention has been */ /* used to specifiy which HDU number to open */ /* --------------------------------------------- */ jj = strlen(infile); for (ii = jj - 1; ii >= 0; ii--) { if (infile[ii] == '+') /* search backwards for '+' sign */ break; } if (ii > 0 && (jj - ii) < 5) /* limit extension numbers to 4 digits */ { infilelen = ii; ii++; for (; ii < jj; ii++) { if (!isdigit((int) infile[ii] ) ) /* are all the chars digits? */ break; } if (ii == jj) { /* yes, the '+n' convention was used. */ infile[infilelen] = '\0'; /* delete the extension number */ } } if (strlen(urltype) + strlen(infile) > FLEN_FILENAME - 1) { return(*status = URL_PARSE_ERROR); } strcat(rootname, urltype); /* construct the root name */ strcat(rootname, infile); return(*status); } /*--------------------------------------------------------------------------*/ int ffourl(char *url, /* I - full input URL */ char *urltype, /* O - url type */ char *outfile, /* O - base file name */ char *tpltfile, /* O - template file name, if any */ char *compspec, /* O - compression specification, if any */ int *status) /* parse the output URL into its basic components. */ { char *ptr1, *ptr2, *ptr3; if (*status > 0) return(*status); if (urltype) *urltype = '\0'; if (outfile) *outfile = '\0'; if (tpltfile) *tpltfile = '\0'; if (compspec) *compspec = '\0'; ptr1 = url; while (*ptr1 == ' ') /* ignore leading blanks */ ptr1++; if ( ( (*ptr1 == '-') && ( *(ptr1 +1) == 0 || *(ptr1 +1) == ' ' ) ) || !strcmp(ptr1, "stdout") || !strcmp(ptr1, "STDOUT")) /* "-" means write to stdout; also support "- " */ /* but exclude disk file names that begin with a minus sign */ /* e.g., "-55d33m.fits" */ { if (urltype) strcpy(urltype, "stdout://"); } else { /* not writing to stdout */ /* get urltype (e.g., file://, ftp://, http://, etc.) */ ptr2 = strstr(ptr1, "://"); if (ptr2) /* copy the explicit urltype string */ { if (urltype) { if (ptr2 - ptr1 + 3 > MAX_PREFIX_LEN - 1) { return(*status = URL_PARSE_ERROR); } strncat(urltype, ptr1, ptr2 - ptr1 + 3); } ptr1 = ptr2 + 3; } else /* assume file driver */ { if (urltype) strcat(urltype, "file://"); } /* look for template file name, enclosed in parenthesis */ ptr2 = strchr(ptr1, '('); /* look for image compression parameters, enclosed in sq. brackets */ ptr3 = strchr(ptr1, '['); if (outfile) { if (ptr2) { /* template file was specified */ if (ptr2 - ptr1 > FLEN_FILENAME - 1) { return(*status = URL_PARSE_ERROR); } strncat(outfile, ptr1, ptr2 - ptr1); } else if (ptr3) { /* compression was specified */ if (ptr3 - ptr1 > FLEN_FILENAME - 1) { return(*status = URL_PARSE_ERROR); } strncat(outfile, ptr1, ptr3 - ptr1); } else { /* no template file or compression */ if (strlen(ptr1) > FLEN_FILENAME - 1) { return(*status = URL_PARSE_ERROR); } strcpy(outfile, ptr1); } } if (ptr2) /* template file was specified */ { ptr2++; ptr1 = strchr(ptr2, ')' ); /* search for closing ) */ if (!ptr1) { return(*status = URL_PARSE_ERROR); /* error, no closing ) */ } if (tpltfile) { if (ptr1 - ptr2 > FLEN_FILENAME - 1) { return(*status = URL_PARSE_ERROR); } strncat(tpltfile, ptr2, ptr1 - ptr2); } } if (ptr3) /* compression was specified */ { ptr3++; ptr1 = strchr(ptr3, ']' ); /* search for closing ] */ if (!ptr1) { return(*status = URL_PARSE_ERROR); /* error, no closing ] */ } if (compspec) { if (ptr1 - ptr3 > FLEN_FILENAME - 1) { return(*status = URL_PARSE_ERROR); } strncat(compspec, ptr3, ptr1 - ptr3); } } /* check if a .gz compressed output file is to be created */ /* by seeing if the filename ends in '.gz' */ if (urltype && outfile) { if (!strcmp(urltype, "file://") ) { ptr1 = strstr(outfile, ".gz"); if (ptr1) { /* make sure the ".gz" is at the end of the file name */ ptr1 += 3; if (*ptr1 == 0 || *ptr1 == ' ' ) strcpy(urltype, "compressoutfile://"); } } } } return(*status); } /*--------------------------------------------------------------------------*/ int ffexts(char *extspec, int *extnum, char *extname, int *extvers, int *hdutype, char *imagecolname, char *rowexpress, int *status) { /* Parse the input extension specification string, returning either the extension number or the values of the EXTNAME, EXTVERS, and XTENSION keywords in desired extension. Also return the name of the column containing an image, and an expression to be used to determine which row to use, if present. */ char *ptr1, *ptr2; int slen, nvals; int notint = 1; /* initially assume specified extname is not an integer */ char tmpname[FLEN_VALUE], *loc; *extnum = 0; *extname = '\0'; *extvers = 0; *hdutype = ANY_HDU; *imagecolname = '\0'; *rowexpress = '\0'; if (*status > 0) return(*status); ptr1 = extspec; /* pointer to first char */ while (*ptr1 == ' ') /* skip over any leading blanks */ ptr1++; if (isdigit((int) *ptr1)) /* is the extension specification a number? */ { notint = 0; /* looks like extname may actually be the ext. number */ errno = 0; /* reset this prior to calling strtol */ *extnum = strtol(ptr1, &loc, 10); /* read the string as an integer */ while (*loc == ' ') /* skip over trailing blanks */ loc++; /* check for read error, or junk following the integer */ if ((*loc != '\0' && *loc != ';' ) || (errno == ERANGE) ) { *extnum = 0; notint = 1; /* no, extname was not a simple integer after all */ errno = 0; /* reset error condition flag if it was set */ } if ( *extnum < 0 || *extnum > 99999) { *extnum = 0; /* this is not a reasonable extension number */ ffpmsg("specified extension number is out of range:"); ffpmsg(extspec); return(*status = URL_PARSE_ERROR); } } /* This logic was too simple, and failed on extnames like '1000TEMP' where it would try to move to the 1000th extension if (isdigit((int) *ptr1)) { sscanf(ptr1, "%d", extnum); if (*extnum < 0 || *extnum > 9999) { *extnum = 0; ffpmsg("specified extension number is out of range:"); ffpmsg(extspec); return(*status = URL_PARSE_ERROR); } } */ if (notint) { /* not a number, so EXTNAME must be specified, followed by */ /* optional EXTVERS and XTENSION values */ /* don't use space char as end indicator, because there */ /* may be imbedded spaces in the EXTNAME value */ slen = strcspn(ptr1, ",:;"); /* length of EXTNAME */ if (slen > FLEN_VALUE - 1) { return(*status = URL_PARSE_ERROR); } strncat(extname, ptr1, slen); /* EXTNAME value */ /* now remove any trailing blanks */ while (slen > 0 && *(extname + slen -1) == ' ') { *(extname + slen -1) = '\0'; slen--; } ptr1 += slen; slen = strspn(ptr1, " ,:"); /* skip delimiter characters */ ptr1 += slen; slen = strcspn(ptr1, " ,:;"); /* length of EXTVERS */ if (slen) { nvals = sscanf(ptr1, "%d", extvers); /* EXTVERS value */ if (nvals != 1) { ffpmsg("illegal EXTVER value in input URL:"); ffpmsg(extspec); return(*status = URL_PARSE_ERROR); } ptr1 += slen; slen = strspn(ptr1, " ,:"); /* skip delimiter characters */ ptr1 += slen; slen = strcspn(ptr1, ";"); /* length of HDUTYPE */ if (slen) { if (*ptr1 == 'b' || *ptr1 == 'B') *hdutype = BINARY_TBL; else if (*ptr1 == 't' || *ptr1 == 'T' || *ptr1 == 'a' || *ptr1 == 'A') *hdutype = ASCII_TBL; else if (*ptr1 == 'i' || *ptr1 == 'I') *hdutype = IMAGE_HDU; else { ffpmsg("unknown type of HDU in input URL:"); ffpmsg(extspec); return(*status = URL_PARSE_ERROR); } } } else { strcpy(tmpname, extname); ffupch(tmpname); if (!strcmp(tmpname, "PRIMARY") || !strcmp(tmpname, "P") ) *extname = '\0'; /* return extnum = 0 */ } } ptr1 = strchr(ptr1, ';'); if (ptr1) { /* an image is to be opened; the image is contained in a single */ /* cell of a binary table. A column name and an expression to */ /* determine which row to use has been entered. */ ptr1++; /* skip over the ';' delimiter */ while (*ptr1 == ' ') /* skip over any leading blanks */ ptr1++; ptr2 = strchr(ptr1, '('); if (!ptr2) { ffpmsg("illegal specification of image in table cell in input URL:"); ffpmsg(" did not find a row expression enclosed in ( )"); ffpmsg(extspec); return(*status = URL_PARSE_ERROR); } if (ptr2 - ptr1 > FLEN_FILENAME - 1) { return(*status = URL_PARSE_ERROR); } strncat(imagecolname, ptr1, ptr2 - ptr1); /* copy column name */ ptr2++; /* skip over the '(' delimiter */ while (*ptr2 == ' ') /* skip over any leading blanks */ ptr2++; ptr1 = strchr(ptr2, ')'); if (!ptr2) { ffpmsg("illegal specification of image in table cell in input URL:"); ffpmsg(" missing closing ')' character in row expression"); ffpmsg(extspec); return(*status = URL_PARSE_ERROR); } if (ptr1 - ptr2 > FLEN_FILENAME - 1) { return(*status = URL_PARSE_ERROR); } strncat(rowexpress, ptr2, ptr1 - ptr2); /* row expression */ } return(*status); } /*--------------------------------------------------------------------------*/ int ffextn(char *url, /* I - input filename/URL */ int *extension_num, /* O - returned extension number */ int *status) { /* Parse the input url string and return the number of the extension that CFITSIO would automatically move to if CFITSIO were to open this input URL. The extension numbers are one's based, so 1 = the primary array, 2 = the first extension, etc. The extension number that gets returned is determined by the following algorithm: 1. If the input URL includes a binning specification (e.g. 'myfile.fits[3][bin X,Y]') then the returned extension number will always = 1, since CFITSIO would create a temporary primary image on the fly in this case. The same is true if an image within a single cell of a binary table is opened. 2. Else if the input URL specifies an extension number (e.g., 'myfile.fits[3]' or 'myfile.fits+3') then the specified extension number (+ 1) is returned. 3. Else if the extension name is specified in brackets (e.g., this 'myfile.fits[EVENTS]') then the file will be opened and searched for the extension number. If the input URL is '-' (reading from the stdin file stream) this is not possible and an error will be returned. 4. Else if the URL does not specify an extension (e.g. 'myfile.fits') then a special extension number = -99 will be returned to signal that no extension was specified. This feature is mainly for compatibility with existing FTOOLS software. CFITSIO would open the primary array by default (extension_num = 1) in this case. */ fitsfile *fptr; char urltype[20]; char infile[FLEN_FILENAME]; char outfile[FLEN_FILENAME]; char extspec[FLEN_FILENAME]; char extname[FLEN_FILENAME]; char rowfilter[FLEN_FILENAME]; char binspec[FLEN_FILENAME]; char colspec[FLEN_FILENAME]; char imagecolname[FLEN_VALUE], rowexpress[FLEN_FILENAME]; char *cptr; int extnum, extvers, hdutype, tstatus = 0; if (*status > 0) return(*status); /* parse the input URL into its basic components */ fits_parse_input_url(url, urltype, infile, outfile, extspec, rowfilter,binspec, colspec, status); if (*status > 0) return(*status); if (*binspec) /* is there a binning specification? */ { *extension_num = 1; /* a temporary primary array image is created */ return(*status); } if (*extspec) /* is an extension specified? */ { ffexts(extspec, &extnum, extname, &extvers, &hdutype, imagecolname, rowexpress, status); if (*status > 0) return(*status); if (*imagecolname) /* is an image within a table cell being opened? */ { *extension_num = 1; /* a temporary primary array image is created */ return(*status); } if (*extname) { /* have to open the file to search for the extension name (curses!) */ if (!strcmp(urltype, "stdin://")) /* opening stdin would destroying it! */ return(*status = URL_PARSE_ERROR); /* First, strip off any filtering specification */ infile[0] = '\0'; strncat(infile, url, FLEN_FILENAME -1); cptr = strchr(infile, ']'); /* locate the closing bracket */ if (!cptr) { return(*status = URL_PARSE_ERROR); } else { cptr++; *cptr = '\0'; /* terminate URl after the extension spec */ } if (ffopen(&fptr, infile, READONLY, status) > 0) /* open the file */ { ffclos(fptr, &tstatus); return(*status); } ffghdn(fptr, &extnum); /* where am I in the file? */ *extension_num = extnum; ffclos(fptr, status); return(*status); } else { *extension_num = extnum + 1; /* return the specified number (+ 1) */ return(*status); } } else { *extension_num = -99; /* no specific extension was specified */ /* defaults to primary array */ return(*status); } } /*--------------------------------------------------------------------------*/ int ffurlt(fitsfile *fptr, char *urlType, int *status) /* return the prefix string associated with the driver in use by the fitsfile pointer fptr */ { strcpy(urlType, driverTable[fptr->Fptr->driver].prefix); return(*status); } /*--------------------------------------------------------------------------*/ int ffimport_file( char *filename, /* Text file to read */ char **contents, /* Pointer to pointer to hold file */ int *status ) /* CFITSIO error code */ /* Read and concatenate all the lines from the given text file. User must free the pointer returned in contents. Pointer is guaranteed to hold 2 characters more than the length of the text... allows the calling routine to append (or prepend) a newline (or quotes?) without reallocating memory. */ { int allocLen, totalLen, llen, eoline = 1; char *lines,line[256]; FILE *aFile; if( *status > 0 ) return( *status ); totalLen = 0; allocLen = 1024; lines = (char *)malloc( allocLen * sizeof(char) ); if( !lines ) { ffpmsg("Couldn't allocate memory to hold ASCII file contents."); return(*status = MEMORY_ALLOCATION ); } lines[0] = '\0'; if( (aFile = fopen( filename, "r" ))==NULL ) { sprintf(line,"Could not open ASCII file %s.",filename); ffpmsg(line); free( lines ); return(*status = FILE_NOT_OPENED); } while( fgets(line,256,aFile)!=NULL ) { llen = strlen(line); if ( eoline && (llen > 1) && (line[0] == '/' && line[1] == '/')) continue; /* skip comment lines begging with // */ eoline = 0; /* replace CR and newline chars at end of line with nulls */ if ((llen > 0) && (line[llen-1]=='\n' || line[llen-1] == '\r')) { line[--llen] = '\0'; eoline = 1; /* found an end of line character */ if ((llen > 0) && (line[llen-1]=='\n' || line[llen-1] == '\r')) { line[--llen] = '\0'; } } if( totalLen + llen + 3 >= allocLen ) { allocLen += 256; lines = (char *)realloc(lines, allocLen * sizeof(char) ); if( ! lines ) { ffpmsg("Couldn't allocate memory to hold ASCII file contents."); *status = MEMORY_ALLOCATION; break; } } strcpy( lines+totalLen, line ); totalLen += llen; if (eoline) { strcpy( lines+totalLen, " "); /* add a space between lines */ totalLen += 1; } } fclose(aFile); *contents = lines; return( *status ); } /*--------------------------------------------------------------------------*/ int fits_get_token(char **ptr, char *delimiter, char *token, int *isanumber) /* O - is this token a number? */ /* parse off the next token, delimited by a character in 'delimiter', from the input ptr string; increment *ptr to the end of the token. Returns the length of the token, not including the delimiter char; */ { char *loc, tval[73]; int slen; double dval; *token = '\0'; while (**ptr == ' ') /* skip over leading blanks */ (*ptr)++; slen = strcspn(*ptr, delimiter); /* length of next token */ if (slen) { strncat(token, *ptr, slen); /* copy token */ (*ptr) += slen; /* skip over the token */ if (isanumber) /* check if token is a number */ { *isanumber = 1; if (strchr(token, 'D')) { strncpy(tval, token, 72); tval[72] = '\0'; /* The C language does not support a 'D'; replace with 'E' */ if ((loc = strchr(tval, 'D'))) *loc = 'E'; dval = strtod(tval, &loc); } else { dval = strtod(token, &loc); } /* check for read error, or junk following the value */ if (*loc != '\0' && *loc != ' ' ) *isanumber = 0; if (errno == ERANGE) *isanumber = 0; } } return(slen); } /*--------------------------------------------------------------------------*/ int fits_get_token2(char **ptr, char *delimiter, char **token, int *isanumber, /* O - is this token a number? */ int *status) /* parse off the next token, delimited by a character in 'delimiter', from the input ptr string; increment *ptr to the end of the token. Returns the length of the token, not including the delimiter char; This routine allocates the *token string; the calling routine must free it */ { char *loc, tval[73]; int slen; double dval; if (*status) return(0); while (**ptr == ' ') /* skip over leading blanks */ (*ptr)++; slen = strcspn(*ptr, delimiter); /* length of next token */ if (slen) { *token = (char *) calloc(slen + 1, 1); if (!(*token)) { ffpmsg("Couldn't allocate memory to hold token string (fits_get_token2)."); *status = MEMORY_ALLOCATION ; return(0); } strncat(*token, *ptr, slen); /* copy token */ (*ptr) += slen; /* skip over the token */ if (isanumber) /* check if token is a number */ { *isanumber = 1; if (strchr(*token, 'D')) { strncpy(tval, *token, 72); tval[72] = '\0'; /* The C language does not support a 'D'; replace with 'E' */ if ((loc = strchr(tval, 'D'))) *loc = 'E'; dval = strtod(tval, &loc); } else { dval = strtod(*token, &loc); } /* check for read error, or junk following the value */ if (*loc != '\0' && *loc != ' ' ) *isanumber = 0; if (errno == ERANGE) *isanumber = 0; } } return(slen); } /*---------------------------------------------------------------------------*/ char *fits_split_names( char *list) /* I - input list of names */ { /* A sequence of calls to fits_split_names will split the input string into name tokens. The string typically contains a list of file or column names. The names must be delimited by a comma and/or spaces. This routine ignores spaces and commas that occur within parentheses, brackets, or curly brackets. It also strips any leading and trailing blanks from the returned name. This routine is similar to the ANSI C 'strtok' function: The first call to fits_split_names has a non-null input string. It finds the first name in the string and terminates it by overwriting the next character of the string with a '\0' and returns a pointer to the name. Each subsequent call, indicated by a NULL value of the input string, returns the next name, searching from just past the end of the previous name. It returns NULL when no further names are found. The following line illustrates how a string would be split into 3 names: myfile[1][bin (x,y)=4], file2.fits file3.fits ^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^ ^^^^^^^^^^ 1st name 2nd name 3rd name NOTE: This routine is not thread-safe. This routine is simply provided as a utility routine for other external software. It is not used by any CFITSIO routine. */ int depth = 0; char *start; static char *ptr; if (list) /* reset ptr if a string is given */ ptr = list; while (*ptr == ' ')ptr++; /* skip leading white space */ if (*ptr == '\0')return(0); /* no remaining file names */ start = ptr; while (*ptr != '\0') { if ((*ptr == '[') || (*ptr == '(') || (*ptr == '{')) depth ++; else if ((*ptr == '}') || (*ptr == ')') || (*ptr == ']')) depth --; else if ((depth == 0) && (*ptr == ',' || *ptr == ' ')) { *ptr = '\0'; /* terminate the filename here */ ptr++; /* save pointer to start of next filename */ break; } ptr++; } return(start); } /*--------------------------------------------------------------------------*/ int urltype2driver(char *urltype, int *driver) /* compare input URL with list of known drivers, returning the matching driver numberL. */ { int ii; /* find matching driver; search most recent drivers first */ for (ii=no_of_drivers - 1; ii >= 0; ii--) { if (0 == strcmp(driverTable[ii].prefix, urltype)) { *driver = ii; return(0); } } return(NO_MATCHING_DRIVER); } /*--------------------------------------------------------------------------*/ int ffclos(fitsfile *fptr, /* I - FITS file pointer */ int *status) /* IO - error status */ /* close the FITS file by completing the current HDU, flushing it to disk, then calling the system dependent routine to physically close the FITS file */ { int tstatus = NO_CLOSE_ERROR, zerostatus = 0; if (!fptr) return(*status = NULL_INPUT_PTR); else if ((fptr->Fptr)->validcode != VALIDSTRUC) /* check for magic value */ return(*status = BAD_FILEPTR); /* close and flush the current HDU */ if (*status > 0) ffchdu(fptr, &tstatus); /* turn off the error message from ffchdu */ else ffchdu(fptr, status); ((fptr->Fptr)->open_count)--; /* decrement usage counter */ if ((fptr->Fptr)->open_count == 0) /* if no other files use structure */ { ffflsh(fptr, TRUE, status); /* flush and disassociate IO buffers */ /* call driver function to actually close the file */ if ((*driverTable[(fptr->Fptr)->driver].close)((fptr->Fptr)->filehandle)) { if (*status <= 0) { *status = FILE_NOT_CLOSED; /* report if no previous error */ ffpmsg("failed to close the following file: (ffclos)"); ffpmsg((fptr->Fptr)->filename); } } fits_clear_Fptr( fptr->Fptr, status); /* clear Fptr address */ free((fptr->Fptr)->iobuffer); /* free memory for I/O buffers */ free((fptr->Fptr)->headstart); /* free memory for headstart array */ free((fptr->Fptr)->filename); /* free memory for the filename */ (fptr->Fptr)->filename = 0; (fptr->Fptr)->validcode = 0; /* magic value to indicate invalid fptr */ free(fptr->Fptr); /* free memory for the FITS file structure */ free(fptr); /* free memory for the FITS file structure */ } else { /* to minimize the fallout from any previous error (e.g., trying to open a non-existent extension in a already opened file), always call ffflsh with status = 0. */ /* just flush the buffers, don't disassociate them */ if (*status > 0) ffflsh(fptr, FALSE, &zerostatus); else ffflsh(fptr, FALSE, status); free(fptr); /* free memory for the FITS file structure */ } return(*status); } /*--------------------------------------------------------------------------*/ int ffdelt(fitsfile *fptr, /* I - FITS file pointer */ int *status) /* IO - error status */ /* close and DELETE the FITS file. */ { char *basename; int slen, tstatus = NO_CLOSE_ERROR, zerostatus = 0; if (!fptr) return(*status = NULL_INPUT_PTR); else if ((fptr->Fptr)->validcode != VALIDSTRUC) /* check for magic value */ return(*status = BAD_FILEPTR); if (*status > 0) ffchdu(fptr, &tstatus); /* turn off the error message from ffchdu */ else ffchdu(fptr, status); ffflsh(fptr, TRUE, status); /* flush and disassociate IO buffers */ /* call driver function to actually close the file */ if ( (*driverTable[(fptr->Fptr)->driver].close)((fptr->Fptr)->filehandle) ) { if (*status <= 0) { *status = FILE_NOT_CLOSED; /* report error if no previous error */ ffpmsg("failed to close the following file: (ffdelt)"); ffpmsg((fptr->Fptr)->filename); } } /* call driver function to actually delete the file */ if ( (driverTable[(fptr->Fptr)->driver].remove) ) { /* parse the input URL to get the base filename */ slen = strlen((fptr->Fptr)->filename); basename = (char *) malloc(slen +1); if (!basename) return(*status = MEMORY_ALLOCATION); fits_parse_input_url((fptr->Fptr)->filename, NULL, basename, NULL, NULL, NULL, NULL, NULL, &zerostatus); if ((*driverTable[(fptr->Fptr)->driver].remove)(basename)) { ffpmsg("failed to delete the following file: (ffdelt)"); ffpmsg((fptr->Fptr)->filename); if (!(*status)) *status = FILE_NOT_CLOSED; } free(basename); } fits_clear_Fptr( fptr->Fptr, status); /* clear Fptr address */ free((fptr->Fptr)->iobuffer); /* free memory for I/O buffers */ free((fptr->Fptr)->headstart); /* free memory for headstart array */ free((fptr->Fptr)->filename); /* free memory for the filename */ (fptr->Fptr)->filename = 0; (fptr->Fptr)->validcode = 0; /* magic value to indicate invalid fptr */ free(fptr->Fptr); /* free memory for the FITS file structure */ free(fptr); /* free memory for the FITS file structure */ return(*status); } /*--------------------------------------------------------------------------*/ int fftrun( fitsfile *fptr, /* I - FITS file pointer */ LONGLONG filesize, /* I - size to truncate the file */ int *status) /* O - error status */ /* low level routine to truncate a file to a new smaller size. */ { if (driverTable[(fptr->Fptr)->driver].truncate) { ffflsh(fptr, FALSE, status); /* flush all the buffers first */ (fptr->Fptr)->filesize = filesize; (fptr->Fptr)->io_pos = filesize; (fptr->Fptr)->logfilesize = filesize; (fptr->Fptr)->bytepos = filesize; ffbfeof(fptr, status); /* eliminate any buffers beyond current EOF */ return (*status = (*driverTable[(fptr->Fptr)->driver].truncate)((fptr->Fptr)->filehandle, filesize) ); } else return(*status); } /*--------------------------------------------------------------------------*/ int ffflushx( FITSfile *fptr) /* I - FITS file pointer */ /* low level routine to flush internal file buffers to the file. */ { if (driverTable[fptr->driver].flush) return ( (*driverTable[fptr->driver].flush)(fptr->filehandle) ); else return(0); /* no flush function defined for this driver */ } /*--------------------------------------------------------------------------*/ int ffseek( FITSfile *fptr, /* I - FITS file pointer */ LONGLONG position) /* I - byte position to seek to */ /* low level routine to seek to a position in a file. */ { return( (*driverTable[fptr->driver].seek)(fptr->filehandle, position) ); } /*--------------------------------------------------------------------------*/ int ffwrite( FITSfile *fptr, /* I - FITS file pointer */ long nbytes, /* I - number of bytes to write */ void *buffer, /* I - buffer to write */ int *status) /* O - error status */ /* low level routine to write bytes to a file. */ { if ( (*driverTable[fptr->driver].write)(fptr->filehandle, buffer, nbytes) ) { ffpmsg("Error writing data buffer to file:"); ffpmsg(fptr->filename); *status = WRITE_ERROR; } return(*status); } /*--------------------------------------------------------------------------*/ int ffread( FITSfile *fptr, /* I - FITS file pointer */ long nbytes, /* I - number of bytes to read */ void *buffer, /* O - buffer to read into */ int *status) /* O - error status */ /* low level routine to read bytes from a file. */ { int readstatus; readstatus = (*driverTable[fptr->driver].read)(fptr->filehandle, buffer, nbytes); if (readstatus == END_OF_FILE) *status = END_OF_FILE; else if (readstatus > 0) { ffpmsg("Error reading data buffer from file:"); ffpmsg(fptr->filename); *status = READ_ERROR; } return(*status); } /*--------------------------------------------------------------------------*/ int fftplt(fitsfile **fptr, /* O - FITS file pointer */ const char *filename, /* I - name of file to create */ const char *tempname, /* I - name of template file */ int *status) /* IO - error status */ /* Create and initialize a new FITS file based on a template file. Uses C fopen and fgets functions. */ { if (*status > 0) return(*status); if ( ffinit(fptr, filename, status) ) /* create empty file */ return(*status); ffoptplt(*fptr, tempname, status); /* open and use template */ return(*status); } /*--------------------------------------------------------------------------*/ int ffoptplt(fitsfile *fptr, /* O - FITS file pointer */ const char *tempname, /* I - name of template file */ int *status) /* IO - error status */ /* open template file and use it to create new file */ { fitsfile *tptr; int tstatus = 0, nkeys, nadd, ii; char card[FLEN_CARD]; if (*status > 0) return(*status); if (tempname == NULL || *tempname == '\0') /* no template file? */ return(*status); /* try opening template */ ffopen(&tptr, (char *) tempname, READONLY, &tstatus); if (tstatus) /* not a FITS file, so treat it as an ASCII template */ { ffxmsg(2, card); /* clear the error message */ fits_execute_template(fptr, (char *) tempname, status); ffmahd(fptr, 1, 0, status); /* move back to the primary array */ return(*status); } else /* template is a valid FITS file */ { ffmahd(tptr, 1, NULL, status); /* make sure we are at the beginning */ while (*status <= 0) { ffghsp(tptr, &nkeys, &nadd, status); /* get no. of keywords */ for (ii = 1; ii <= nkeys; ii++) /* copy keywords */ { ffgrec(tptr, ii, card, status); /* must reset the PCOUNT keyword to zero in the new output file */ if (strncmp(card, "PCOUNT ",8) == 0) { /* the PCOUNT keyword? */ if (strncmp(card+25, " 0", 5)) { /* non-zero value? */ strncpy(card, "PCOUNT = 0", 30); } } ffprec(fptr, card, status); } ffmrhd(tptr, 1, 0, status); /* move to next HDU until error */ ffcrhd(fptr, status); /* create empty new HDU in output file */ } if (*status == END_OF_FILE) { *status = 0; /* expected error condition */ } ffclos(tptr, status); /* close the template file */ } ffmahd(fptr, 1, 0, status); /* move to the primary array */ return(*status); } /*--------------------------------------------------------------------------*/ void ffrprt( FILE *stream, int status) /* Print out report of cfitsio error status and messages on the error stack. Uses C FILE stream. */ { char status_str[FLEN_STATUS], errmsg[FLEN_ERRMSG]; if (status) { fits_get_errstatus(status, status_str); /* get the error description */ fprintf(stream, "\nFITSIO status = %d: %s\n", status, status_str); while ( fits_read_errmsg(errmsg) ) /* get error stack messages */ fprintf(stream, "%s\n", errmsg); } return; } /*--------------------------------------------------------------------------*/ int pixel_filter_helper( fitsfile **fptr, /* IO - pointer to input image; on output it */ /* points to the new image */ char *outfile, /* I - name for output file */ char *expr, /* I - Image filter expression */ int *status) { PixelFilter filter = { 0 }; char * DEFAULT_TAG = "X"; int ii, hdunum; int singleHDU = 0; filter.count = 1; filter.ifptr = fptr; filter.tag = &DEFAULT_TAG; /* create new empty file for result */ if (ffinit(&filter.ofptr, outfile, status) > 0) { ffpmsg("failed to create output file for pixel filter:"); ffpmsg(outfile); return(*status); } fits_get_hdu_num(*fptr, &hdunum); /* current HDU number in input file */ expr += 3; /* skip 'pix' */ switch (expr[0]) { case 'b': case 'B': filter.bitpix = BYTE_IMG; break; case 'i': case 'I': filter.bitpix = SHORT_IMG; break; case 'j': case 'J': filter.bitpix = LONG_IMG; break; case 'r': case 'R': filter.bitpix = FLOAT_IMG; break; case 'd': case 'D': filter.bitpix = DOUBLE_IMG; break; } if (filter.bitpix) /* skip bitpix indicator */ ++expr; if (*expr == '1') { ++expr; singleHDU = 1; } if (((*fptr)->Fptr)->only_one) singleHDU = 1; if (*expr != ' ') { ffpmsg("pixel filtering expression not space separated:"); ffpmsg(expr); } while (*expr == ' ') ++expr; /* copy all preceding extensions to the output file */ for (ii = 1; !singleHDU && ii < hdunum; ii++) { fits_movabs_hdu(*fptr, ii, NULL, status); if (fits_copy_hdu(*fptr, filter.ofptr, 0, status) > 0) { ffclos(filter.ofptr, status); return(*status); } } /* move back to the original HDU position */ fits_movabs_hdu(*fptr, hdunum, NULL, status); filter.expression = expr; if (fits_pixel_filter(&filter, status)) { ffpmsg("failed to execute image filter:"); ffpmsg(expr); ffclos(filter.ofptr, status); return(*status); } /* copy any remaining HDUs to the output file */ for (ii = hdunum + 1; !singleHDU; ii++) { if (fits_movabs_hdu(*fptr, ii, NULL, status) > 0) break; fits_copy_hdu(*fptr, filter.ofptr, 0, status); } if (*status == END_OF_FILE) *status = 0; /* got the expected EOF error; reset = 0 */ else if (*status > 0) { ffclos(filter.ofptr, status); return(*status); } /* close the original file and return ptr to the new image */ ffclos(*fptr, status); *fptr = filter.ofptr; /* reset the pointer to the new table */ /* move back to the image subsection */ if (ii - 1 != hdunum) fits_movabs_hdu(*fptr, hdunum, NULL, status); return(*status); } healpy-1.8.1/cfitsio/fitscopy.c0000654000175000017530000000512212272000775017061 0ustar zoncaplanck00000000000000#include #include "fitsio.h" int main(int argc, char *argv[]) { fitsfile *infptr, *outfptr; /* FITS file pointers defined in fitsio.h */ int status = 0; /* status must always be initialized = 0 */ if (argc != 3) { printf("Usage: fitscopy inputfile outputfile\n"); printf("\n"); printf("Copy an input file to an output file, optionally filtering\n"); printf("the file in the process. This seemingly simple program can\n"); printf("apply powerful filters which transform the input file as\n"); printf("it is being copied. Filters may be used to extract a\n"); printf("subimage from a larger image, select rows from a table,\n"); printf("filter a table with a GTI time extension or a SAO region file,\n"); printf("create or delete columns in a table, create an image by\n"); printf("binning (histogramming) 2 table columns, and convert IRAF\n"); printf("format *.imh or raw binary data files into FITS images.\n"); printf("See the CFITSIO User's Guide for a complete description of\n"); printf("the Extended File Name filtering syntax.\n"); printf("\n"); printf("Examples:\n"); printf("\n"); printf("fitscopy in.fit out.fit (simple file copy)\n"); printf("fitscopy - - (stdin to stdout)\n"); printf("fitscopy in.fit[11:50,21:60] out.fit (copy a subimage)\n"); printf("fitscopy iniraf.imh out.fit (IRAF image to FITS)\n"); printf("fitscopy in.dat[i512,512] out.fit (raw array to FITS)\n"); printf("fitscopy in.fit[events][pi>35] out.fit (copy rows with pi>35)\n"); printf("fitscopy in.fit[events][bin X,Y] out.fit (bin an image) \n"); printf("fitscopy in.fit[events][col x=.9*y] out.fit (new x column)\n"); printf("fitscopy in.fit[events][gtifilter()] out.fit (time filter)\n"); printf("fitscopy in.fit[2][regfilter(\"pow.reg\")] out.fit (spatial filter)\n"); printf("\n"); printf("Note that it may be necessary to enclose the input file name\n"); printf("in single quote characters on the Unix command line.\n"); return(0); } /* Open the input file */ if ( !fits_open_file(&infptr, argv[1], READONLY, &status) ) { /* Create the output file */ if ( !fits_create_file(&outfptr, argv[2], &status) ) { /* copy the previous, current, and following HDUs */ fits_copy_file(infptr, outfptr, 1, 1, 1, &status); fits_close_file(outfptr, &status); } fits_close_file(infptr, &status); } /* if error occured, print out error message */ if (status) fits_report_error(stderr, status); return(status); } healpy-1.8.1/cfitsio/windumpexts.c0000654000175000017530000003122612272000775017614 0ustar zoncaplanck00000000000000/* * winDumpExts.c -- * Author: Gordon Chaffee, Scott Stanton * * History: The real functionality of this file was written by * Matt Pietrek in 1993 in his pedump utility. I've * modified it to dump the externals in a bunch of object * files to create a .def file. * * 10/12/95 Modified by Scott Stanton to support Relocatable Object Module * Format files for Borland C++ 4.5. * * Notes: Visual C++ puts an underscore before each exported symbol. * This file removes them. I don't know if this is a problem * this other compilers. If _MSC_VER is defined, * the underscore is removed. If not, it isn't. To get a * full dump of an object file, use the -f option. This can * help determine the something that may be different with a * compiler other than Visual C++. *---------------------------------------------------------------------- * */ #include #include #include #include #ifdef _ALPHA_ #define e_magic_number IMAGE_FILE_MACHINE_ALPHA #else #define e_magic_number IMAGE_FILE_MACHINE_I386 #endif /* *---------------------------------------------------------------------- * GetArgcArgv -- * * Break up a line into argc argv *---------------------------------------------------------------------- */ int GetArgcArgv(char *s, char **argv) { int quote = 0; int argc = 0; char *bp; bp = s; while (1) { while (isspace(*bp)) { bp++; } if (*bp == '\n' || *bp == '\0') { *bp = '\0'; return argc; } if (*bp == '\"') { quote = 1; bp++; } argv[argc++] = bp; while (*bp != '\0') { if (quote) { if (*bp == '\"') { quote = 0; *bp = '\0'; bp++; break; } bp++; continue; } if (isspace(*bp)) { *bp = '\0'; bp++; break; } bp++; } } } /* * The names of the first group of possible symbol table storage classes */ char * SzStorageClass1[] = { "NULL","AUTOMATIC","EXTERNAL","STATIC","REGISTER","EXTERNAL_DEF","LABEL", "UNDEFINED_LABEL","MEMBER_OF_STRUCT","ARGUMENT","STRUCT_TAG", "MEMBER_OF_UNION","UNION_TAG","TYPE_DEFINITION","UNDEFINED_STATIC", "ENUM_TAG","MEMBER_OF_ENUM","REGISTER_PARAM","BIT_FIELD" }; /* * The names of the second group of possible symbol table storage classes */ char * SzStorageClass2[] = { "BLOCK","FUNCTION","END_OF_STRUCT","FILE","SECTION","WEAK_EXTERNAL" }; /* *---------------------------------------------------------------------- * GetSZStorageClass -- * * Given a symbol storage class value, return a descriptive * ASCII string *---------------------------------------------------------------------- */ PSTR GetSZStorageClass(BYTE storageClass) { if ( storageClass <= IMAGE_SYM_CLASS_BIT_FIELD ) return SzStorageClass1[storageClass]; else if ( (storageClass >= IMAGE_SYM_CLASS_BLOCK) && (storageClass <= IMAGE_SYM_CLASS_WEAK_EXTERNAL) ) return SzStorageClass2[storageClass-IMAGE_SYM_CLASS_BLOCK]; else return "???"; } /* *---------------------------------------------------------------------- * GetSectionName -- * * Used by DumpSymbolTable, it gives meaningful names to * the non-normal section number. * * Results: * A name is returned in buffer *---------------------------------------------------------------------- */ void GetSectionName(WORD section, PSTR buffer, unsigned cbBuffer) { char tempbuffer[10]; switch ( (SHORT)section ) { case IMAGE_SYM_UNDEFINED: strcpy(tempbuffer, "UNDEF"); break; case IMAGE_SYM_ABSOLUTE: strcpy(tempbuffer, "ABS "); break; case IMAGE_SYM_DEBUG: strcpy(tempbuffer, "DEBUG"); break; default: wsprintf(tempbuffer, "%-5X", section); } strncpy(buffer, tempbuffer, cbBuffer-1); } /* *---------------------------------------------------------------------- * DumpSymbolTable -- * * Dumps a COFF symbol table from an EXE or OBJ. We only use * it to dump tables from OBJs. *---------------------------------------------------------------------- */ void DumpSymbolTable(PIMAGE_SYMBOL pSymbolTable, FILE *fout, unsigned cSymbols) { unsigned i; PSTR stringTable; char sectionName[10]; fprintf(fout, "Symbol Table - %X entries (* = auxillary symbol)\n", cSymbols); fprintf(fout, "Indx Name Value Section cAux Type Storage\n" "---- -------------------- -------- ---------- ----- ------- --------\n"); /* * The string table apparently starts right after the symbol table */ stringTable = (PSTR)&pSymbolTable[cSymbols]; for ( i=0; i < cSymbols; i++ ) { fprintf(fout, "%04X ", i); if ( pSymbolTable->N.Name.Short != 0 ) fprintf(fout, "%-20.8s", pSymbolTable->N.ShortName); else fprintf(fout, "%-20s", stringTable + pSymbolTable->N.Name.Long); fprintf(fout, " %08X", pSymbolTable->Value); GetSectionName(pSymbolTable->SectionNumber, sectionName, sizeof(sectionName)); fprintf(fout, " sect:%s aux:%X type:%02X st:%s\n", sectionName, pSymbolTable->NumberOfAuxSymbols, pSymbolTable->Type, GetSZStorageClass(pSymbolTable->StorageClass) ); #if 0 if ( pSymbolTable->NumberOfAuxSymbols ) DumpAuxSymbols(pSymbolTable); #endif /* * Take into account any aux symbols */ i += pSymbolTable->NumberOfAuxSymbols; pSymbolTable += pSymbolTable->NumberOfAuxSymbols; pSymbolTable++; } } /* *---------------------------------------------------------------------- * DumpExternals -- * * Dumps a COFF symbol table from an EXE or OBJ. We only use * it to dump tables from OBJs. *---------------------------------------------------------------------- */ void DumpExternals(PIMAGE_SYMBOL pSymbolTable, FILE *fout, unsigned cSymbols) { unsigned i; PSTR stringTable; char *s, *f; char symbol[1024]; /* * The string table apparently starts right after the symbol table */ stringTable = (PSTR)&pSymbolTable[cSymbols]; for ( i=0; i < cSymbols; i++ ) { if (pSymbolTable->SectionNumber > 0 && pSymbolTable->Type == 0x20) { if (pSymbolTable->StorageClass == IMAGE_SYM_CLASS_EXTERNAL) { if (pSymbolTable->N.Name.Short != 0) { strncpy(symbol, pSymbolTable->N.ShortName, 8); symbol[8] = 0; } else { s = stringTable + pSymbolTable->N.Name.Long; strcpy(symbol, s); } s = symbol; f = strchr(s, '@'); if (f) { *f = 0; } #if defined(_MSC_VER) && defined(_X86_) if (symbol[0] == '_') { s = &symbol[1]; } #endif if ((stricmp(s, "DllEntryPoint") != 0) && (stricmp(s, "DllMain") != 0)) { fprintf(fout, "\t%s\n", s); } } } /* * Take into account any aux symbols */ i += pSymbolTable->NumberOfAuxSymbols; pSymbolTable += pSymbolTable->NumberOfAuxSymbols; pSymbolTable++; } } /* *---------------------------------------------------------------------- * DumpObjFile -- * * Dump an object file--either a full listing or just the exported * symbols. *---------------------------------------------------------------------- */ void DumpObjFile(PIMAGE_FILE_HEADER pImageFileHeader, FILE *fout, int full) { PIMAGE_SYMBOL PCOFFSymbolTable; DWORD COFFSymbolCount; PCOFFSymbolTable = (PIMAGE_SYMBOL) ((DWORD)pImageFileHeader + pImageFileHeader->PointerToSymbolTable); COFFSymbolCount = pImageFileHeader->NumberOfSymbols; if (full) { DumpSymbolTable(PCOFFSymbolTable, fout, COFFSymbolCount); } else { DumpExternals(PCOFFSymbolTable, fout, COFFSymbolCount); } } /* *---------------------------------------------------------------------- * SkipToNextRecord -- * * Skip over the current ROMF record and return the type of the * next record. *---------------------------------------------------------------------- */ BYTE SkipToNextRecord(BYTE **ppBuffer) { int length; (*ppBuffer)++; /* Skip over the type.*/ length = *((WORD*)(*ppBuffer))++; /* Retrieve the length. */ *ppBuffer += length; /* Skip over the rest. */ return **ppBuffer; /* Return the type. */ } /* *---------------------------------------------------------------------- * DumpROMFObjFile -- * * Dump a Relocatable Object Module Format file, displaying only * the exported symbols. *---------------------------------------------------------------------- */ void DumpROMFObjFile(LPVOID pBuffer, FILE *fout) { BYTE type, length; char symbol[1024], *s; while (1) { type = SkipToNextRecord(&(BYTE*)pBuffer); if (type == 0x90) { /* PUBDEF */ if (((BYTE*)pBuffer)[4] != 0) { length = ((BYTE*)pBuffer)[5]; strncpy(symbol, ((char*)pBuffer) + 6, length); symbol[length] = '\0'; s = symbol; if ((stricmp(s, "DllEntryPoint") != 0) && (stricmp(s, "DllMain") != 0)) { if (s[0] == '_') { s++; fprintf(fout, "\t_%s\n\t%s=_%s\n", s, s, s); } else { fprintf(fout, "\t%s\n", s); } } } } else if (type == 0x8B || type == 0x8A) { /* MODEND */ break; } } } /* *---------------------------------------------------------------------- * DumpFile -- * * Open up a file, memory map it, and call the appropriate * dumping routine *---------------------------------------------------------------------- */ void DumpFile(LPSTR filename, FILE *fout, int full) { HANDLE hFile; HANDLE hFileMapping; LPVOID lpFileBase; PIMAGE_DOS_HEADER dosHeader; hFile = CreateFile(filename, GENERIC_READ, FILE_SHARE_READ, NULL, OPEN_EXISTING, FILE_ATTRIBUTE_NORMAL, 0); if (hFile == INVALID_HANDLE_VALUE) { fprintf(stderr, "Couldn't open file with CreateFile()\n"); return; } hFileMapping = CreateFileMapping(hFile, NULL, PAGE_READONLY, 0, 0, NULL); if (hFileMapping == 0) { CloseHandle(hFile); fprintf(stderr, "Couldn't open file mapping with CreateFileMapping()\n"); return; } lpFileBase = MapViewOfFile(hFileMapping, FILE_MAP_READ, 0, 0, 0); if (lpFileBase == 0) { CloseHandle(hFileMapping); CloseHandle(hFile); fprintf(stderr, "Couldn't map view of file with MapViewOfFile()\n"); return; } dosHeader = (PIMAGE_DOS_HEADER)lpFileBase; if (dosHeader->e_magic == IMAGE_DOS_SIGNATURE) { #if 0 DumpExeFile( dosHeader ); #else fprintf(stderr, "File is an executable. I don't dump those.\n"); return; #endif } /* Does it look like a i386 COFF OBJ file??? */ else if ((dosHeader->e_magic == e_magic_number) && (dosHeader->e_sp == 0)) { /* * The two tests above aren't what they look like. They're * really checking for IMAGE_FILE_HEADER.Machine == i386 (0x14C) * and IMAGE_FILE_HEADER.SizeOfOptionalHeader == 0; */ DumpObjFile((PIMAGE_FILE_HEADER) lpFileBase, fout, full); } else if (*((BYTE *)lpFileBase) == 0x80) { /* * This file looks like it might be a ROMF file. */ DumpROMFObjFile(lpFileBase, fout); } else { printf("unrecognized file format\n"); } UnmapViewOfFile(lpFileBase); CloseHandle(hFileMapping); CloseHandle(hFile); } void main(int argc, char **argv) { char *fargv[1000]; char cmdline[10000]; int i, arg; FILE *fout; int pos; int full = 0; char *outfile = NULL; if (argc < 3) { Usage: fprintf(stderr, "Usage: %s ?-o outfile? ?-f(ull)? ..\n", argv[0]); exit(1); } arg = 1; while (argv[arg][0] == '-') { if (strcmp(argv[arg], "--") == 0) { arg++; break; } else if (strcmp(argv[arg], "-f") == 0) { full = 1; } else if (strcmp(argv[arg], "-o") == 0) { arg++; if (arg == argc) { goto Usage; } outfile = argv[arg]; } arg++; } if (arg == argc) { goto Usage; } if (outfile) { fout = fopen(outfile, "w+"); if (fout == NULL) { fprintf(stderr, "Unable to open \'%s\' for writing:\n", argv[arg]); perror(""); exit(1); } } else { fout = stdout; } if (! full) { char *dllname = argv[arg]; arg++; if (arg == argc) { goto Usage; } fprintf(fout, "LIBRARY %s\n", dllname); fprintf(fout, "EXETYPE WINDOWS\n"); fprintf(fout, "CODE PRELOAD MOVEABLE DISCARDABLE\n"); fprintf(fout, "DATA PRELOAD MOVEABLE MULTIPLE\n\n"); fprintf(fout, "EXPORTS\n"); } for (; arg < argc; arg++) { if (argv[arg][0] == '@') { FILE *fargs = fopen(&argv[arg][1], "r"); if (fargs == NULL) { fprintf(stderr, "Unable to open \'%s\' for reading:\n", argv[arg]); perror(""); exit(1); } pos = 0; for (i = 0; i < arg; i++) { strcpy(&cmdline[pos], argv[i]); pos += strlen(&cmdline[pos]) + 1; fargv[i] = argv[i]; } fgets(&cmdline[pos], sizeof(cmdline), fargs); fprintf(stderr, "%s\n", &cmdline[pos]); fclose(fargs); i += GetArgcArgv(&cmdline[pos], &fargv[i]); argc = i; argv = fargv; } DumpFile(argv[arg], fout, full); } exit(0); } healpy-1.8.1/cfitsio/iter_a.fit0000654000175000017530000037510012272000775017032 0ustar zoncaplanck00000000000000SIMPLE = T / file does conform to FITS standard BITPIX = 16 / number of bits per data pixel NAXIS = 0 / number of data axes EXTEND = T / FITS dataset may contain extensions COMMENT FITS (Flexible Image Transport System) format defined in Astronomy andCOMMENT Astrophysics Supplement Series v44/p363, v44/p371, v73/p359, v73/p365.COMMENT Contact the NASA Science Office of Standards and Technology for the COMMENT FITS Definition document #100 and other FITS information. HISTORY TASK:FMERGE on file ratefile.fits HISTORY fmerge3.1c at 29/12/97 16:1:37. HISTORY TASK:FMERGE on file m1.fits HISTORY fmerge3.1c at 29/12/97 16:2:30. HISTORY TASK:FMERGE on file m3.fits HISTORY fmerge3.1c at 29/12/97 16:3:38. HISTORY TASK:FMERGE on file m5.fits HISTORY fmerge3.1c at 29/12/97 16:4:15. HISTORY TASK:FMERGE on file m7.fits HISTORY fmerge3.1c at 29/12/97 16:5:1.0 HISTORY TASK:FMERGE on file m9.fits HISTORY fmerge3.1c at 29/12/97 16:6:48. END XTENSION= 'BINTABLE' / binary table extension BITPIX = 8 / 8-bit bytes NAXIS = 2 / 2-dimensional binary table NAXIS1 = 12 / width of table in bytes NAXIS2 = 10000 / number of rows in table PCOUNT = 0 / size of special data area GCOUNT = 1 / one data group (required keyword) TFIELDS = 3 / number of fields in each row TTYPE1 = 'Counts ' / label for field 1 TFORM1 = 'J ' / data format of field: 4-byte INTEGER TTYPE2 = 'Time ' / label for field 2 TFORM2 = 'E ' / data format of field: 4-byte REAL TTYPE3 = 'Rate ' / label for field 3 TFORM3 = 'E ' / data format of field: 4-byte REAL EXTNAME = 'rate ' / name of this binary table extension DEADTIME= 1.0 HISTORY This FITS file was created by the FCREATE task. HISTORY fcreate3.1 at 29/12/97 HISTORY File modified by user 'pence' with fv on 97-12-29T15:45:06 HISTORY File modified by user 'pence' with fv on 97-12-29T15:54:30 LIVETIME= 30554.5 / total integration time HISTORY TASK:FMERGE copied 26924 rows from file ratefile.fits HISTORY TASK:FMERGE appended 26924 rows from file r2.fits HISTORY TASK:FMERGE copied 53848 rows from file m1.fits HISTORY TASK:FMERGE appended 53848 rows from file m2.fits HISTORY TASK:FMERGE copied 107696 rows from file m3.fits HISTORY TASK:FMERGE appended 107696 rows from file m4.fits HISTORY TASK:FMERGE copied 215392 rows from file m5.fits HISTORY TASK:FMERGE appended 215392 rows from file m6.fits HISTORY TASK:FMERGE copied 430784 rows from file m7.fits HISTORY TASK:FMERGE appended 430784 rows from file m8.fits HISTORY TASK:FMERGE copied 861568 rows from file m9.fits HISTORY TASK:FMERGE appended 861568 rows from file m10.fits HISTORY File modified by user 'pence' with fv on 97-12-30T10:44:37 HISTORY File modified by user 'pence' with fv on 97-12-30T10:51:44 HISTORY ftabcopy V4.0a copied columns from ratefile.fits HISTORY ftabcopy V4.0a at 5/1/98 23:10:24 END ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A 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?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ ?€@ÀdA A ?€@ ?€@@@AUU-@ð@À ?€A @@°?€@ healpy-1.8.1/cfitsio/putkey.c0000654000175000017530000032176012272000775016553 0ustar zoncaplanck00000000000000/* This file, putkey.c, contains routines that write keywords to */ /* a FITS header. */ /* The FITSIO software was written by William Pence at the High Energy */ /* Astrophysic Science Archive Research Center (HEASARC) at the NASA */ /* Goddard Space Flight Center. */ #include #include #include #include /* stddef.h is apparently needed to define size_t */ #include #include "fitsio2.h" /*--------------------------------------------------------------------------*/ int ffcrim(fitsfile *fptr, /* I - FITS file pointer */ int bitpix, /* I - bits per pixel */ int naxis, /* I - number of axes in the array */ long *naxes, /* I - size of each axis */ int *status) /* IO - error status */ /* create an IMAGE extension following the current HDU. If the current HDU is empty (contains no header keywords), then simply write the required image (or primary array) keywords to the current HDU. */ { if (*status > 0) return(*status); if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); /* create new extension if current header is not empty */ if ((fptr->Fptr)->headend != (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu] ) ffcrhd(fptr, status); /* write the required header keywords */ ffphpr(fptr, TRUE, bitpix, naxis, naxes, 0, 1, TRUE, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffcrimll(fitsfile *fptr, /* I - FITS file pointer */ int bitpix, /* I - bits per pixel */ int naxis, /* I - number of axes in the array */ LONGLONG *naxes, /* I - size of each axis */ int *status) /* IO - error status */ /* create an IMAGE extension following the current HDU. If the current HDU is empty (contains no header keywords), then simply write the required image (or primary array) keywords to the current HDU. */ { if (*status > 0) return(*status); if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); /* create new extension if current header is not empty */ if ((fptr->Fptr)->headend != (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu] ) ffcrhd(fptr, status); /* write the required header keywords */ ffphprll(fptr, TRUE, bitpix, naxis, naxes, 0, 1, TRUE, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffcrtb(fitsfile *fptr, /* I - FITS file pointer */ int tbltype, /* I - type of table to create */ LONGLONG naxis2, /* I - number of rows in the table */ int tfields, /* I - number of columns in the table */ char **ttype, /* I - name of each column */ char **tform, /* I - value of TFORMn keyword for each column */ char **tunit, /* I - value of TUNITn keyword for each column */ const char *extnm, /* I - value of EXTNAME keyword, if any */ int *status) /* IO - error status */ /* Create a table extension in a FITS file. */ { LONGLONG naxis1 = 0; long *tbcol = 0; if (*status > 0) return(*status); if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); /* create new extension if current header is not empty */ if ((fptr->Fptr)->headend != (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu] ) ffcrhd(fptr, status); if ((fptr->Fptr)->curhdu == 0) /* have to create dummy primary array */ { ffcrim(fptr, 16, 0, tbcol, status); ffcrhd(fptr, status); } if (tbltype == BINARY_TBL) { /* write the required header keywords. This will write PCOUNT = 0 */ ffphbn(fptr, naxis2, tfields, ttype, tform, tunit, extnm, 0, status); } else if (tbltype == ASCII_TBL) { /* write the required header keywords */ /* default values for naxis1 and tbcol will be calculated */ ffphtb(fptr, naxis1, naxis2, tfields, ttype, tbcol, tform, tunit, extnm, status); } else *status = NOT_TABLE; return(*status); } /*-------------------------------------------------------------------------*/ int ffpktp(fitsfile *fptr, /* I - FITS file pointer */ const char *filename, /* I - name of template file */ int *status) /* IO - error status */ /* read keywords from template file and append to the FITS file */ { FILE *diskfile; char card[FLEN_CARD], template[161]; char keyname[FLEN_KEYWORD], newname[FLEN_KEYWORD]; int keytype; size_t slen; if (*status > 0) /* inherit input status value if > 0 */ return(*status); diskfile = fopen(filename,"r"); if (!diskfile) /* couldn't open file */ { ffpmsg("ffpktp could not open the following template file:"); ffpmsg(filename); return(*status = FILE_NOT_OPENED); } while (fgets(template, 160, diskfile) ) /* get next template line */ { template[160] = '\0'; /* make sure string is terminated */ slen = strlen(template); /* get string length */ template[slen - 1] = '\0'; /* over write the 'newline' char */ if (ffgthd(template, card, &keytype, status) > 0) /* parse template */ break; strncpy(keyname, card, 8); keyname[8] = '\0'; if (keytype == -2) /* rename the card */ { strncpy(newname, &card[40], 8); newname[8] = '\0'; ffmnam(fptr, keyname, newname, status); } else if (keytype == -1) /* delete the card */ { ffdkey(fptr, keyname, status); } else if (keytype == 0) /* update the card */ { ffucrd(fptr, keyname, card, status); } else if (keytype == 1) /* append the card */ { ffprec(fptr, card, status); } else /* END card; stop here */ { break; } } fclose(diskfile); /* close the template file */ return(*status); } /*--------------------------------------------------------------------------*/ int ffpky( fitsfile *fptr, /* I - FITS file pointer */ int datatype, /* I - datatype of the value */ const char *keyname,/* I - name of keyword to write */ void *value, /* I - keyword value */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ /* Write (put) the keyword, value and comment into the FITS header. Writes a keyword value with the datatype specified by the 2nd argument. */ { char errmsg[81]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (datatype == TSTRING) { ffpkys(fptr, keyname, (char *) value, comm, status); } else if (datatype == TBYTE) { ffpkyj(fptr, keyname, (LONGLONG) *(unsigned char *) value, comm, status); } else if (datatype == TSBYTE) { ffpkyj(fptr, keyname, (LONGLONG) *(signed char *) value, comm, status); } else if (datatype == TUSHORT) { ffpkyj(fptr, keyname, (LONGLONG) *(unsigned short *) value, comm, status); } else if (datatype == TSHORT) { ffpkyj(fptr, keyname, (LONGLONG) *(short *) value, comm, status); } else if (datatype == TUINT) { ffpkyg(fptr, keyname, (double) *(unsigned int *) value, 0, comm, status); } else if (datatype == TINT) { ffpkyj(fptr, keyname, (LONGLONG) *(int *) value, comm, status); } else if (datatype == TLOGICAL) { ffpkyl(fptr, keyname, *(int *) value, comm, status); } else if (datatype == TULONG) { ffpkyg(fptr, keyname, (double) *(unsigned long *) value, 0, comm, status); } else if (datatype == TLONG) { ffpkyj(fptr, keyname, (LONGLONG) *(long *) value, comm, status); } else if (datatype == TLONGLONG) { ffpkyj(fptr, keyname, *(LONGLONG *) value, comm, status); } else if (datatype == TFLOAT) { ffpkye(fptr, keyname, *(float *) value, -7, comm, status); } else if (datatype == TDOUBLE) { ffpkyd(fptr, keyname, *(double *) value, -15, comm, status); } else if (datatype == TCOMPLEX) { ffpkyc(fptr, keyname, (float *) value, -7, comm, status); } else if (datatype == TDBLCOMPLEX) { ffpkym(fptr, keyname, (double *) value, -15, comm, status); } else { sprintf(errmsg, "Bad keyword datatype code: %d (ffpky)", datatype); ffpmsg(errmsg); *status = BAD_DATATYPE; } return(*status); } /*-------------------------------------------------------------------------*/ int ffprec(fitsfile *fptr, /* I - FITS file pointer */ const char *card, /* I - string to be written */ int *status) /* IO - error status */ /* write a keyword record (80 bytes long) to the end of the header */ { char tcard[FLEN_CARD]; size_t len, ii; long nblocks; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); if ( ((fptr->Fptr)->datastart - (fptr->Fptr)->headend) == 80) /* no room */ { nblocks = 1; if (ffiblk(fptr, nblocks, 0, status) > 0) /* insert 2880-byte block */ return(*status); } strncpy(tcard,card,80); tcard[80] = '\0'; len = strlen(tcard); /* silently replace any illegal characters with a space */ for (ii=0; ii < len; ii++) if (tcard[ii] < ' ' || tcard[ii] > 126) tcard[ii] = ' '; for (ii=len; ii < 80; ii++) /* fill card with spaces if necessary */ tcard[ii] = ' '; for (ii=0; ii < 8; ii++) /* make sure keyword name is uppercase */ tcard[ii] = toupper(tcard[ii]); fftkey(tcard, status); /* test keyword name contains legal chars */ /* no need to do this any more, since any illegal characters have been removed fftrec(tcard, status); */ /* test rest of keyword for legal chars */ ffmbyt(fptr, (fptr->Fptr)->headend, IGNORE_EOF, status); /* move to end */ ffpbyt(fptr, 80, tcard, status); /* write the 80 byte card */ if (*status <= 0) (fptr->Fptr)->headend += 80; /* update end-of-header position */ return(*status); } /*--------------------------------------------------------------------------*/ int ffpkyu( fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - name of keyword to write */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ /* Write (put) a null-valued keyword and comment into the FITS header. */ { char valstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); strcpy(valstring," "); /* create a dummy value string */ ffmkky(keyname, valstring, comm, card, status); /* construct the keyword */ ffprec(fptr, card, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffpkys( fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - name of keyword to write */ const char *value, /* I - keyword value */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ /* Write (put) the keyword, value and comment into the FITS header. The value string will be truncated at 68 characters which is the maximum length that will fit on a single FITS keyword. */ { char valstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); ffs2c(value, valstring, status); /* put quotes around the string */ ffmkky(keyname, valstring, comm, card, status); /* construct the keyword */ ffprec(fptr, card, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffpkls( fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - name of keyword to write */ const char *value, /* I - keyword value */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ /* Write (put) the keyword, value and comment into the FITS header. This routine is a modified version of ffpkys which supports the HEASARC long string convention and can write arbitrarily long string keyword values. The value is continued over multiple keywords that have the name COMTINUE without an equal sign in column 9 of the card. This routine also supports simple string keywords which are less than 69 characters in length. */ { char valstring[FLEN_CARD]; char card[FLEN_CARD], tmpkeyname[FLEN_CARD]; char tstring[FLEN_CARD], *cptr; int next, remain, vlen, nquote, nchar, namelen, contin, tstatus = -1; if (*status > 0) /* inherit input status value if > 0 */ return(*status); remain = maxvalue(strlen(value), 1); /* no. of chars to write (at least 1) */ /* count the number of single quote characters are in the string */ tstring[0] = '\0'; strncat(tstring, value, 68); /* copy 1st part of string to temp buff */ nquote = 0; cptr = strchr(tstring, '\''); /* search for quote character */ while (cptr) /* search for quote character */ { nquote++; /* increment no. of quote characters */ cptr++; /* increment pointer to next character */ cptr = strchr(cptr, '\''); /* search for another quote char */ } strncpy(tmpkeyname, keyname, 80); tmpkeyname[80] = '\0'; cptr = tmpkeyname; while(*cptr == ' ') /* skip over leading spaces in name */ cptr++; /* determine the number of characters that will fit on the line */ /* Note: each quote character is expanded to 2 quotes */ namelen = strlen(cptr); if (namelen <= 8 && (fftkey(cptr, &tstatus) <= 0) ) { /* This a normal 8-character FITS keyword */ nchar = 68 - nquote; /* max of 68 chars fit in a FITS string value */ } else { /* This a HIERARCH keyword */ if (FSTRNCMP(cptr, "HIERARCH ", 9) && FSTRNCMP(cptr, "hierarch ", 9)) nchar = 66 - nquote - namelen; else nchar = 75 - nquote - namelen; /* don't count 'HIERARCH' twice */ } contin = 0; next = 0; /* pointer to next character to write */ while (remain > 0) { tstring[0] = '\0'; strncat(tstring, &value[next], nchar); /* copy string to temp buff */ ffs2c(tstring, valstring, status); /* put quotes around the string */ if (remain > nchar) /* if string is continued, put & as last char */ { vlen = strlen(valstring); nchar -= 1; /* outputting one less character now */ if (valstring[vlen-2] != '\'') valstring[vlen-2] = '&'; /* over write last char with & */ else { /* last char was a pair of single quotes, so over write both */ valstring[vlen-3] = '&'; valstring[vlen-1] = '\0'; } } if (contin) /* This is a CONTINUEd keyword */ { ffmkky("CONTINUE", valstring, comm, card, status); /* make keyword */ strncpy(&card[8], " ", 2); /* overwrite the '=' */ } else { ffmkky(keyname, valstring, comm, card, status); /* make keyword */ } ffprec(fptr, card, status); /* write the keyword */ contin = 1; remain -= nchar; next += nchar; if (remain > 0) { /* count the number of single quote characters in next section */ tstring[0] = '\0'; strncat(tstring, &value[next], 68); /* copy next part of string */ nquote = 0; cptr = strchr(tstring, '\''); /* search for quote character */ while (cptr) /* search for quote character */ { nquote++; /* increment no. of quote characters */ cptr++; /* increment pointer to next character */ cptr = strchr(cptr, '\''); /* search for another quote char */ } nchar = 68 - nquote; /* max number of chars to write this time */ } } return(*status); } /*--------------------------------------------------------------------------*/ int ffplsw( fitsfile *fptr, /* I - FITS file pointer */ int *status) /* IO - error status */ /* Write the LONGSTRN keyword and a series of related COMMENT keywords which document that this FITS header may contain long string keyword values which are continued over multiple keywords using the HEASARC long string keyword convention. If the LONGSTRN keyword already exists then this routine simple returns without doing anything. */ { char valstring[FLEN_VALUE], comm[FLEN_COMMENT]; int tstatus; if (*status > 0) /* inherit input status value if > 0 */ return(*status); tstatus = 0; if (ffgkys(fptr, "LONGSTRN", valstring, comm, &tstatus) == 0) return(*status); /* keyword already exists, so just return */ ffpkys(fptr, "LONGSTRN", "OGIP 1.0", "The HEASARC Long String Convention may be used.", status); ffpcom(fptr, " This FITS file may contain long string keyword values that are", status); ffpcom(fptr, " continued over multiple keywords. The HEASARC convention uses the &", status); ffpcom(fptr, " character at the end of each substring which is then continued", status); ffpcom(fptr, " on the next keyword which has the name CONTINUE.", status); return(*status); } /*--------------------------------------------------------------------------*/ int ffpkyl( fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - name of keyword to write */ int value, /* I - keyword value */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ /* Write (put) the keyword, value and comment into the FITS header. Values equal to 0 will result in a False FITS keyword; any other non-zero value will result in a True FITS keyword. */ { char valstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); ffl2c(value, valstring, status); /* convert to formatted string */ ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffprec(fptr, card, status); /* write the keyword*/ return(*status); } /*--------------------------------------------------------------------------*/ int ffpkyj( fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - name of keyword to write */ LONGLONG value, /* I - keyword value */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ /* Write (put) the keyword, value and comment into the FITS header. Writes an integer keyword value. */ { char valstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); ffi2c(value, valstring, status); /* convert to formatted string */ ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffprec(fptr, card, status); /* write the keyword*/ return(*status); } /*--------------------------------------------------------------------------*/ int ffpkyf( fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - name of keyword to write */ float value, /* I - keyword value */ int decim, /* I - number of decimal places to display */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ /* Write (put) the keyword, value and comment into the FITS header. Writes a fixed float keyword value. */ { char valstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); ffr2f(value, decim, valstring, status); /* convert to formatted string */ ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffprec(fptr, card, status); /* write the keyword*/ return(*status); } /*--------------------------------------------------------------------------*/ int ffpkye( fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - name of keyword to write */ float value, /* I - keyword value */ int decim, /* I - number of decimal places to display */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ /* Write (put) the keyword, value and comment into the FITS header. Writes an exponential float keyword value. */ { char valstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); ffr2e(value, decim, valstring, status); /* convert to formatted string */ ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffprec(fptr, card, status); /* write the keyword*/ return(*status); } /*--------------------------------------------------------------------------*/ int ffpkyg( fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - name of keyword to write */ double value, /* I - keyword value */ int decim, /* I - number of decimal places to display */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ /* Write (put) the keyword, value and comment into the FITS header. Writes a fixed double keyword value.*/ { char valstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); ffd2f(value, decim, valstring, status); /* convert to formatted string */ ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffprec(fptr, card, status); /* write the keyword*/ return(*status); } /*--------------------------------------------------------------------------*/ int ffpkyd( fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - name of keyword to write */ double value, /* I - keyword value */ int decim, /* I - number of decimal places to display */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ /* Write (put) the keyword, value and comment into the FITS header. Writes an exponential double keyword value.*/ { char valstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); ffd2e(value, decim, valstring, status); /* convert to formatted string */ ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffprec(fptr, card, status); /* write the keyword*/ return(*status); } /*--------------------------------------------------------------------------*/ int ffpkyc( fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - name of keyword to write */ float *value, /* I - keyword value (real, imaginary) */ int decim, /* I - number of decimal places to display */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ /* Write (put) the keyword, value and comment into the FITS header. Writes an complex float keyword value. Format = (realvalue, imagvalue) */ { char valstring[FLEN_VALUE], tmpstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); strcpy(valstring, "(" ); ffr2e(value[0], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ", "); ffr2e(value[1], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ")"); ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffprec(fptr, card, status); /* write the keyword*/ return(*status); } /*--------------------------------------------------------------------------*/ int ffpkym( fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - name of keyword to write */ double *value, /* I - keyword value (real, imaginary) */ int decim, /* I - number of decimal places to display */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ /* Write (put) the keyword, value and comment into the FITS header. Writes an complex double keyword value. Format = (realvalue, imagvalue) */ { char valstring[FLEN_VALUE], tmpstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); strcpy(valstring, "(" ); ffd2e(value[0], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ", "); ffd2e(value[1], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ")"); ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffprec(fptr, card, status); /* write the keyword*/ return(*status); } /*--------------------------------------------------------------------------*/ int ffpkfc( fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - name of keyword to write */ float *value, /* I - keyword value (real, imaginary) */ int decim, /* I - number of decimal places to display */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ /* Write (put) the keyword, value and comment into the FITS header. Writes an complex float keyword value. Format = (realvalue, imagvalue) */ { char valstring[FLEN_VALUE], tmpstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); strcpy(valstring, "(" ); ffr2f(value[0], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ", "); ffr2f(value[1], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ")"); ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffprec(fptr, card, status); /* write the keyword*/ return(*status); } /*--------------------------------------------------------------------------*/ int ffpkfm( fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - name of keyword to write */ double *value, /* I - keyword value (real, imaginary) */ int decim, /* I - number of decimal places to display */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ /* Write (put) the keyword, value and comment into the FITS header. Writes an complex double keyword value. Format = (realvalue, imagvalue) */ { char valstring[FLEN_VALUE], tmpstring[FLEN_VALUE]; char card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); strcpy(valstring, "(" ); ffd2f(value[0], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ", "); ffd2f(value[1], decim, tmpstring, status); /* convert to string */ strcat(valstring, tmpstring); strcat(valstring, ")"); ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffprec(fptr, card, status); /* write the keyword*/ return(*status); } /*--------------------------------------------------------------------------*/ int ffpkyt( fitsfile *fptr, /* I - FITS file pointer */ const char *keyname,/* I - name of keyword to write */ long intval, /* I - integer part of value */ double fraction, /* I - fractional part of value */ const char *comm, /* I - keyword comment */ int *status) /* IO - error status */ /* Write (put) a 'triple' precision keyword where the integer and fractional parts of the value are passed in separate parameters to increase the total amount of numerical precision. */ { char valstring[FLEN_VALUE]; char card[FLEN_CARD]; char fstring[20], *cptr; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (fraction > 1. || fraction < 0.) { ffpmsg("fraction must be between 0. and 1. (ffpkyt)"); return(*status = BAD_F2C); } ffi2c(intval, valstring, status); /* convert integer to string */ ffd2f(fraction, 16, fstring, status); /* convert to 16 decimal string */ cptr = strchr(fstring, '.'); /* find the decimal point */ strcat(valstring, cptr); /* append the fraction to the integer */ ffmkky(keyname, valstring, comm, card, status); /* construct the keyword*/ ffprec(fptr, card, status); /* write the keyword*/ return(*status); } /*-----------------------------------------------------------------*/ int ffpcom( fitsfile *fptr, /* I - FITS file pointer */ const char *comm, /* I - comment string */ int *status) /* IO - error status */ /* Write 1 or more COMMENT keywords. If the comment string is too long to fit on a single keyword (72 chars) then it will automatically be continued on multiple CONTINUE keywords. */ { char card[FLEN_CARD]; int len, ii; if (*status > 0) /* inherit input status value if > 0 */ return(*status); len = strlen(comm); ii = 0; for (; len > 0; len -= 72) { strcpy(card, "COMMENT "); strncat(card, &comm[ii], 72); ffprec(fptr, card, status); ii += 72; } return(*status); } /*-----------------------------------------------------------------*/ int ffphis( fitsfile *fptr, /* I - FITS file pointer */ const char *history, /* I - history string */ int *status) /* IO - error status */ /* Write 1 or more HISTORY keywords. If the history string is too long to fit on a single keyword (72 chars) then it will automatically be continued on multiple HISTORY keywords. */ { char card[FLEN_CARD]; int len, ii; if (*status > 0) /* inherit input status value if > 0 */ return(*status); len = strlen(history); ii = 0; for (; len > 0; len -= 72) { strcpy(card, "HISTORY "); strncat(card, &history[ii], 72); ffprec(fptr, card, status); ii += 72; } return(*status); } /*-----------------------------------------------------------------*/ int ffpdat( fitsfile *fptr, /* I - FITS file pointer */ int *status) /* IO - error status */ /* Write the DATE keyword into the FITS header. If the keyword already exists then the date will simply be updated in the existing keyword. */ { int timeref; char date[30], tmzone[10], card[FLEN_CARD]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); ffgstm(date, &timeref, status); if (timeref) /* GMT not available on this machine */ strcpy(tmzone, " Local"); else strcpy(tmzone, " UT"); strcpy(card, "DATE = '"); strcat(card, date); strcat(card, "' / file creation date (YYYY-MM-DDThh:mm:ss"); strcat(card, tmzone); strcat(card, ")"); ffucrd(fptr, "DATE", card, status); return(*status); } /*-------------------------------------------------------------------*/ int ffverifydate(int year, /* I - year (0 - 9999) */ int month, /* I - month (1 - 12) */ int day, /* I - day (1 - 31) */ int *status) /* IO - error status */ /* Verify that the date is valid */ { int ndays[] = {0,31,28,31,30,31,30,31,31,30,31,30,31}; char errmsg[81]; if (year < 0 || year > 9999) { sprintf(errmsg, "input year value = %d is out of range 0 - 9999", year); ffpmsg(errmsg); return(*status = BAD_DATE); } else if (month < 1 || month > 12) { sprintf(errmsg, "input month value = %d is out of range 1 - 12", month); ffpmsg(errmsg); return(*status = BAD_DATE); } if (ndays[month] == 31) { if (day < 1 || day > 31) { sprintf(errmsg, "input day value = %d is out of range 1 - 31 for month %d", day, month); ffpmsg(errmsg); return(*status = BAD_DATE); } } else if (ndays[month] == 30) { if (day < 1 || day > 30) { sprintf(errmsg, "input day value = %d is out of range 1 - 30 for month %d", day, month); ffpmsg(errmsg); return(*status = BAD_DATE); } } else { if (day < 1 || day > 28) { if (day == 29) { /* year is a leap year if it is divisible by 4 but not by 100, except years divisible by 400 are leap years */ if ((year % 4 == 0 && year % 100 != 0 ) || year % 400 == 0) return (*status); sprintf(errmsg, "input day value = %d is out of range 1 - 28 for February %d (not leap year)", day, year); ffpmsg(errmsg); } else { sprintf(errmsg, "input day value = %d is out of range 1 - 28 (or 29) for February", day); ffpmsg(errmsg); } return(*status = BAD_DATE); } } return(*status); } /*-----------------------------------------------------------------*/ int ffgstm( char *timestr, /* O - returned system date and time string */ int *timeref, /* O - GMT = 0, Local time = 1 */ int *status) /* IO - error status */ /* Returns the current date and time in format 'yyyy-mm-ddThh:mm:ss'. */ { time_t tp; struct tm *ptr; if (*status > 0) /* inherit input status value if > 0 */ return(*status); time(&tp); ptr = gmtime(&tp); /* get GMT (= UTC) time */ if (timeref) { if (ptr) *timeref = 0; /* returning GMT */ else *timeref = 1; /* returning local time */ } if (!ptr) /* GMT not available on this machine */ ptr = localtime(&tp); strftime(timestr, 25, "%Y-%m-%dT%H:%M:%S", ptr); return(*status); } /*-----------------------------------------------------------------*/ int ffdt2s(int year, /* I - year (0 - 9999) */ int month, /* I - month (1 - 12) */ int day, /* I - day (1 - 31) */ char *datestr, /* O - date string: "YYYY-MM-DD" */ int *status) /* IO - error status */ /* Construct a date character string */ { if (*status > 0) /* inherit input status value if > 0 */ return(*status); *datestr = '\0'; if (ffverifydate(year, month, day, status) > 0) { ffpmsg("invalid date (ffdt2s)"); return(*status); } if (year >= 1900 && year <= 1998) /* use old 'dd/mm/yy' format */ sprintf(datestr, "%.2d/%.2d/%.2d", day, month, year - 1900); else /* use the new 'YYYY-MM-DD' format */ sprintf(datestr, "%.4d-%.2d-%.2d", year, month, day); return(*status); } /*-----------------------------------------------------------------*/ int ffs2dt(char *datestr, /* I - date string: "YYYY-MM-DD" or "dd/mm/yy" */ int *year, /* O - year (0 - 9999) */ int *month, /* O - month (1 - 12) */ int *day, /* O - day (1 - 31) */ int *status) /* IO - error status */ /* Parse a date character string into year, month, and day values */ { int slen, lyear, lmonth, lday; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (year) *year = 0; if (month) *month = 0; if (day) *day = 0; if (!datestr) { ffpmsg("error: null input date string (ffs2dt)"); return(*status = BAD_DATE); /* Null datestr pointer ??? */ } slen = strlen(datestr); if (slen == 8 && datestr[2] == '/' && datestr[5] == '/') { if (isdigit((int) datestr[0]) && isdigit((int) datestr[1]) && isdigit((int) datestr[3]) && isdigit((int) datestr[4]) && isdigit((int) datestr[6]) && isdigit((int) datestr[7]) ) { /* this is an old format string: "dd/mm/yy" */ lyear = atoi(&datestr[6]) + 1900; lmonth = atoi(&datestr[3]); lday = atoi(datestr); if (year) *year = lyear; if (month) *month = lmonth; if (day) *day = lday; } else { ffpmsg("input date string has illegal format (ffs2dt):"); ffpmsg(datestr); return(*status = BAD_DATE); } } else if (slen >= 10 && datestr[4] == '-' && datestr[7] == '-') { if (isdigit((int) datestr[0]) && isdigit((int) datestr[1]) && isdigit((int) datestr[2]) && isdigit((int) datestr[3]) && isdigit((int) datestr[5]) && isdigit((int) datestr[6]) && isdigit((int) datestr[8]) && isdigit((int) datestr[9]) ) { if (slen > 10 && datestr[10] != 'T') { ffpmsg("input date string has illegal format (ffs2dt):"); ffpmsg(datestr); return(*status = BAD_DATE); } /* this is a new format string: "yyyy-mm-dd" */ lyear = atoi(datestr); lmonth = atoi(&datestr[5]); lday = atoi(&datestr[8]); if (year) *year = lyear; if (month) *month = lmonth; if (day) *day = lday; } else { ffpmsg("input date string has illegal format (ffs2dt):"); ffpmsg(datestr); return(*status = BAD_DATE); } } else { ffpmsg("input date string has illegal format (ffs2dt):"); ffpmsg(datestr); return(*status = BAD_DATE); } if (ffverifydate(lyear, lmonth, lday, status) > 0) { ffpmsg("invalid date (ffs2dt)"); } return(*status); } /*-----------------------------------------------------------------*/ int fftm2s(int year, /* I - year (0 - 9999) */ int month, /* I - month (1 - 12) */ int day, /* I - day (1 - 31) */ int hour, /* I - hour (0 - 23) */ int minute, /* I - minute (0 - 59) */ double second, /* I - second (0. - 60.9999999) */ int decimals, /* I - number of decimal points to write */ char *datestr, /* O - date string: "YYYY-MM-DDThh:mm:ss.ddd" */ /* or "hh:mm:ss.ddd" if year, month day = 0 */ int *status) /* IO - error status */ /* Construct a date and time character string */ { int width; char errmsg[81]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); *datestr='\0'; if (year != 0 || month != 0 || day !=0) { if (ffverifydate(year, month, day, status) > 0) { ffpmsg("invalid date (fftm2s)"); return(*status); } } if (hour < 0 || hour > 23) { sprintf(errmsg, "input hour value is out of range 0 - 23: %d (fftm2s)", hour); ffpmsg(errmsg); return(*status = BAD_DATE); } else if (minute < 0 || minute > 59) { sprintf(errmsg, "input minute value is out of range 0 - 59: %d (fftm2s)", minute); ffpmsg(errmsg); return(*status = BAD_DATE); } else if (second < 0. || second >= 61) { sprintf(errmsg, "input second value is out of range 0 - 60.999: %f (fftm2s)", second); ffpmsg(errmsg); return(*status = BAD_DATE); } else if (decimals > 25) { sprintf(errmsg, "input decimals value is out of range 0 - 25: %d (fftm2s)", decimals); ffpmsg(errmsg); return(*status = BAD_DATE); } if (decimals == 0) width = 2; else width = decimals + 3; if (decimals < 0) { /* a negative decimals value means return only the date, not time */ sprintf(datestr, "%.4d-%.2d-%.2d", year, month, day); } else if (year == 0 && month == 0 && day == 0) { /* return only the time, not the date */ sprintf(datestr, "%.2d:%.2d:%0*.*f", hour, minute, width, decimals, second); } else { /* return both the time and date */ sprintf(datestr, "%.4d-%.2d-%.2dT%.2d:%.2d:%0*.*f", year, month, day, hour, minute, width, decimals, second); } return(*status); } /*-----------------------------------------------------------------*/ int ffs2tm(char *datestr, /* I - date string: "YYYY-MM-DD" */ /* or "YYYY-MM-DDThh:mm:ss.ddd" */ /* or "dd/mm/yy" */ int *year, /* O - year (0 - 9999) */ int *month, /* O - month (1 - 12) */ int *day, /* O - day (1 - 31) */ int *hour, /* I - hour (0 - 23) */ int *minute, /* I - minute (0 - 59) */ double *second, /* I - second (0. - 60.9999999) */ int *status) /* IO - error status */ /* Parse a date character string into date and time values */ { int slen; char errmsg[81]; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (year) *year = 0; if (month) *month = 0; if (day) *day = 0; if (hour) *hour = 0; if (minute) *minute = 0; if (second) *second = 0.; if (!datestr) { ffpmsg("error: null input date string (ffs2tm)"); return(*status = BAD_DATE); /* Null datestr pointer ??? */ } if (datestr[2] == '/' || datestr[4] == '-') { /* Parse the year, month, and date */ if (ffs2dt(datestr, year, month, day, status) > 0) return(*status); slen = strlen(datestr); if (slen == 8 || slen == 10) return(*status); /* OK, no time fields */ else if (slen < 19) { ffpmsg("input date string has illegal format:"); ffpmsg(datestr); return(*status = BAD_DATE); } else if (datestr[10] == 'T' && datestr[13] == ':' && datestr[16] == ':') { if (isdigit((int) datestr[11]) && isdigit((int) datestr[12]) && isdigit((int) datestr[14]) && isdigit((int) datestr[15]) && isdigit((int) datestr[17]) && isdigit((int) datestr[18]) ) { if (slen > 19 && datestr[19] != '.') { ffpmsg("input date string has illegal format:"); ffpmsg(datestr); return(*status = BAD_DATE); } /* this is a new format string: "yyyy-mm-ddThh:mm:ss.dddd" */ if (hour) *hour = atoi(&datestr[11]); if (minute) *minute = atoi(&datestr[14]); if (second) *second = atof(&datestr[17]); } else { ffpmsg("input date string has illegal format:"); ffpmsg(datestr); return(*status = BAD_DATE); } } } else /* no date fields */ { if (datestr[2] == ':' && datestr[5] == ':') /* time string */ { if (isdigit((int) datestr[0]) && isdigit((int) datestr[1]) && isdigit((int) datestr[3]) && isdigit((int) datestr[4]) && isdigit((int) datestr[6]) && isdigit((int) datestr[7]) ) { /* this is a time string: "hh:mm:ss.dddd" */ if (hour) *hour = atoi(&datestr[0]); if (minute) *minute = atoi(&datestr[3]); if (second) *second = atof(&datestr[6]); } else { ffpmsg("input date string has illegal format:"); ffpmsg(datestr); return(*status = BAD_DATE); } } else { ffpmsg("input date string has illegal format:"); ffpmsg(datestr); return(*status = BAD_DATE); } } if (hour) if (*hour < 0 || *hour > 23) { sprintf(errmsg, "hour value is out of range 0 - 23: %d (ffs2tm)", *hour); ffpmsg(errmsg); return(*status = BAD_DATE); } if (minute) if (*minute < 0 || *minute > 59) { sprintf(errmsg, "minute value is out of range 0 - 59: %d (ffs2tm)", *minute); ffpmsg(errmsg); return(*status = BAD_DATE); } if (second) if (*second < 0 || *second >= 61.) { sprintf(errmsg, "second value is out of range 0 - 60.9999: %f (ffs2tm)", *second); ffpmsg(errmsg); return(*status = BAD_DATE); } return(*status); } /*--------------------------------------------------------------------------*/ int ffgsdt( int *day, int *month, int *year, int *status ) { /* This routine is included for backward compatibility with the Fortran FITSIO library. ffgsdt : Get current System DaTe (GMT if available) Return integer values of the day, month, and year Function parameters: day Day of the month month Numerical month (1=Jan, etc.) year Year (1999, 2000, etc.) status output error status */ time_t now; struct tm *date; now = time( NULL ); date = gmtime(&now); /* get GMT (= UTC) time */ if (!date) /* GMT not available on this machine */ { date = localtime(&now); } *day = date->tm_mday; *month = date->tm_mon + 1; *year = date->tm_year + 1900; /* tm_year is defined as years since 1900 */ return( *status ); } /*--------------------------------------------------------------------------*/ int ffpkns( fitsfile *fptr, /* I - FITS file pointer */ const char *keyroot, /* I - root name of keywords to write */ int nstart, /* I - starting index number */ int nkey, /* I - number of keywords to write */ char *value[], /* I - array of pointers to keyword values */ char *comm[], /* I - array of pointers to keyword comment */ int *status) /* IO - error status */ /* Write (put) an indexed array of keywords with index numbers between NSTART and (NSTART + NKEY -1) inclusive. Writes string keywords. The value strings will be truncated at 68 characters, and the HEASARC long string keyword convention is not supported by this routine. */ { char keyname[FLEN_KEYWORD], tcomment[FLEN_COMMENT]; int ii, jj, repeat, len; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* check if first comment string is to be repeated for all the keywords */ /* by looking to see if the last non-blank character is a '&' char */ repeat = 0; if (comm) { len = strlen(comm[0]); while (len > 0 && comm[0][len - 1] == ' ') len--; /* ignore trailing blanks */ if (comm[0][len - 1] == '&') { len = minvalue(len, FLEN_COMMENT); tcomment[0] = '\0'; strncat(tcomment, comm[0], len-1); /* don't copy the final '&' char */ repeat = 1; } } else { repeat = 1; tcomment[0] = '\0'; } for (ii=0, jj=nstart; ii < nkey; ii++, jj++) { ffkeyn(keyroot, jj, keyname, status); if (repeat) ffpkys(fptr, keyname, value[ii], tcomment, status); else ffpkys(fptr, keyname, value[ii], comm[ii], status); if (*status > 0) return(*status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffpknl( fitsfile *fptr, /* I - FITS file pointer */ const char *keyroot, /* I - root name of keywords to write */ int nstart, /* I - starting index number */ int nkey, /* I - number of keywords to write */ int *value, /* I - array of keyword values */ char *comm[], /* I - array of pointers to keyword comment */ int *status) /* IO - error status */ /* Write (put) an indexed array of keywords with index numbers between NSTART and (NSTART + NKEY -1) inclusive. Writes logical keywords Values equal to zero will be written as a False FITS keyword value; any other non-zero value will result in a True FITS keyword. */ { char keyname[FLEN_KEYWORD], tcomment[FLEN_COMMENT]; int ii, jj, repeat, len; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* check if first comment string is to be repeated for all the keywords */ /* by looking to see if the last non-blank character is a '&' char */ repeat = 0; if (comm) { len = strlen(comm[0]); while (len > 0 && comm[0][len - 1] == ' ') len--; /* ignore trailing blanks */ if (comm[0][len - 1] == '&') { len = minvalue(len, FLEN_COMMENT); tcomment[0] = '\0'; strncat(tcomment, comm[0], len-1); /* don't copy the final '&' char */ repeat = 1; } } else { repeat = 1; tcomment[0] = '\0'; } for (ii=0, jj=nstart; ii < nkey; ii++, jj++) { ffkeyn(keyroot, jj, keyname, status); if (repeat) ffpkyl(fptr, keyname, value[ii], tcomment, status); else ffpkyl(fptr, keyname, value[ii], comm[ii], status); if (*status > 0) return(*status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffpknj( fitsfile *fptr, /* I - FITS file pointer */ const char *keyroot, /* I - root name of keywords to write */ int nstart, /* I - starting index number */ int nkey, /* I - number of keywords to write */ long *value, /* I - array of keyword values */ char *comm[], /* I - array of pointers to keyword comment */ int *status) /* IO - error status */ /* Write (put) an indexed array of keywords with index numbers between NSTART and (NSTART + NKEY -1) inclusive. Write integer keywords */ { char keyname[FLEN_KEYWORD], tcomment[FLEN_COMMENT]; int ii, jj, repeat, len; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* check if first comment string is to be repeated for all the keywords */ /* by looking to see if the last non-blank character is a '&' char */ repeat = 0; if (comm) { len = strlen(comm[0]); while (len > 0 && comm[0][len - 1] == ' ') len--; /* ignore trailing blanks */ if (comm[0][len - 1] == '&') { len = minvalue(len, FLEN_COMMENT); tcomment[0] = '\0'; strncat(tcomment, comm[0], len-1); /* don't copy the final '&' char */ repeat = 1; } } else { repeat = 1; tcomment[0] = '\0'; } for (ii=0, jj=nstart; ii < nkey; ii++, jj++) { ffkeyn(keyroot, jj, keyname, status); if (repeat) ffpkyj(fptr, keyname, value[ii], tcomment, status); else ffpkyj(fptr, keyname, value[ii], comm[ii], status); if (*status > 0) return(*status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffpknjj( fitsfile *fptr, /* I - FITS file pointer */ const char *keyroot, /* I - root name of keywords to write */ int nstart, /* I - starting index number */ int nkey, /* I - number of keywords to write */ LONGLONG *value, /* I - array of keyword values */ char *comm[], /* I - array of pointers to keyword comment */ int *status) /* IO - error status */ /* Write (put) an indexed array of keywords with index numbers between NSTART and (NSTART + NKEY -1) inclusive. Write integer keywords */ { char keyname[FLEN_KEYWORD], tcomment[FLEN_COMMENT]; int ii, jj, repeat, len; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* check if first comment string is to be repeated for all the keywords */ /* by looking to see if the last non-blank character is a '&' char */ repeat = 0; if (comm) { len = strlen(comm[0]); while (len > 0 && comm[0][len - 1] == ' ') len--; /* ignore trailing blanks */ if (comm[0][len - 1] == '&') { len = minvalue(len, FLEN_COMMENT); tcomment[0] = '\0'; strncat(tcomment, comm[0], len-1); /* don't copy the final '&' char */ repeat = 1; } } else { repeat = 1; tcomment[0] = '\0'; } for (ii=0, jj=nstart; ii < nkey; ii++, jj++) { ffkeyn(keyroot, jj, keyname, status); if (repeat) ffpkyj(fptr, keyname, value[ii], tcomment, status); else ffpkyj(fptr, keyname, value[ii], comm[ii], status); if (*status > 0) return(*status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffpknf( fitsfile *fptr, /* I - FITS file pointer */ const char *keyroot, /* I - root name of keywords to write */ int nstart, /* I - starting index number */ int nkey, /* I - number of keywords to write */ float *value, /* I - array of keyword values */ int decim, /* I - number of decimals to display */ char *comm[], /* I - array of pointers to keyword comment */ int *status) /* IO - error status */ /* Write (put) an indexed array of keywords with index numbers between NSTART and (NSTART + NKEY -1) inclusive. Writes fixed float values. */ { char keyname[FLEN_KEYWORD], tcomment[FLEN_COMMENT]; int ii, jj, repeat, len; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* check if first comment string is to be repeated for all the keywords */ /* by looking to see if the last non-blank character is a '&' char */ repeat = 0; if (comm) { len = strlen(comm[0]); while (len > 0 && comm[0][len - 1] == ' ') len--; /* ignore trailing blanks */ if (comm[0][len - 1] == '&') { len = minvalue(len, FLEN_COMMENT); tcomment[0] = '\0'; strncat(tcomment, comm[0], len-1); /* don't copy the final '&' char */ repeat = 1; } } else { repeat = 1; tcomment[0] = '\0'; } for (ii=0, jj=nstart; ii < nkey; ii++, jj++) { ffkeyn(keyroot, jj, keyname, status); if (repeat) ffpkyf(fptr, keyname, value[ii], decim, tcomment, status); else ffpkyf(fptr, keyname, value[ii], decim, comm[ii], status); if (*status > 0) return(*status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffpkne( fitsfile *fptr, /* I - FITS file pointer */ const char *keyroot, /* I - root name of keywords to write */ int nstart, /* I - starting index number */ int nkey, /* I - number of keywords to write */ float *value, /* I - array of keyword values */ int decim, /* I - number of decimals to display */ char *comm[], /* I - array of pointers to keyword comment */ int *status) /* IO - error status */ /* Write (put) an indexed array of keywords with index numbers between NSTART and (NSTART + NKEY -1) inclusive. Writes exponential float values. */ { char keyname[FLEN_KEYWORD], tcomment[FLEN_COMMENT]; int ii, jj, repeat, len; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* check if first comment string is to be repeated for all the keywords */ /* by looking to see if the last non-blank character is a '&' char */ repeat = 0; if (comm) { len = strlen(comm[0]); while (len > 0 && comm[0][len - 1] == ' ') len--; /* ignore trailing blanks */ if (comm[0][len - 1] == '&') { len = minvalue(len, FLEN_COMMENT); tcomment[0] = '\0'; strncat(tcomment, comm[0], len-1); /* don't copy the final '&' char */ repeat = 1; } } else { repeat = 1; tcomment[0] = '\0'; } for (ii=0, jj=nstart; ii < nkey; ii++, jj++) { ffkeyn(keyroot, jj, keyname, status); if (repeat) ffpkye(fptr, keyname, value[ii], decim, tcomment, status); else ffpkye(fptr, keyname, value[ii], decim, comm[ii], status); if (*status > 0) return(*status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffpkng( fitsfile *fptr, /* I - FITS file pointer */ const char *keyroot, /* I - root name of keywords to write */ int nstart, /* I - starting index number */ int nkey, /* I - number of keywords to write */ double *value, /* I - array of keyword values */ int decim, /* I - number of decimals to display */ char *comm[], /* I - array of pointers to keyword comment */ int *status) /* IO - error status */ /* Write (put) an indexed array of keywords with index numbers between NSTART and (NSTART + NKEY -1) inclusive. Writes fixed double values. */ { char keyname[FLEN_KEYWORD], tcomment[FLEN_COMMENT]; int ii, jj, repeat, len; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* check if first comment string is to be repeated for all the keywords */ /* by looking to see if the last non-blank character is a '&' char */ repeat = 0; if (comm) { len = strlen(comm[0]); while (len > 0 && comm[0][len - 1] == ' ') len--; /* ignore trailing blanks */ if (comm[0][len - 1] == '&') { len = minvalue(len, FLEN_COMMENT); tcomment[0] = '\0'; strncat(tcomment, comm[0], len-1); /* don't copy the final '&' char */ repeat = 1; } } else { repeat = 1; tcomment[0] = '\0'; } for (ii=0, jj=nstart; ii < nkey; ii++, jj++) { ffkeyn(keyroot, jj, keyname, status); if (repeat) ffpkyg(fptr, keyname, value[ii], decim, tcomment, status); else ffpkyg(fptr, keyname, value[ii], decim, comm[ii], status); if (*status > 0) return(*status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffpknd( fitsfile *fptr, /* I - FITS file pointer */ const char *keyroot, /* I - root name of keywords to write */ int nstart, /* I - starting index number */ int nkey, /* I - number of keywords to write */ double *value, /* I - array of keyword values */ int decim, /* I - number of decimals to display */ char *comm[], /* I - array of pointers to keyword comment */ int *status) /* IO - error status */ /* Write (put) an indexed array of keywords with index numbers between NSTART and (NSTART + NKEY -1) inclusive. Writes exponential double values. */ { char keyname[FLEN_KEYWORD], tcomment[FLEN_COMMENT]; int ii, jj, repeat, len; if (*status > 0) /* inherit input status value if > 0 */ return(*status); /* check if first comment string is to be repeated for all the keywords */ /* by looking to see if the last non-blank character is a '&' char */ repeat = 0; if (comm) { len = strlen(comm[0]); while (len > 0 && comm[0][len - 1] == ' ') len--; /* ignore trailing blanks */ if (comm[0][len - 1] == '&') { len = minvalue(len, FLEN_COMMENT); tcomment[0] = '\0'; strncat(tcomment, comm[0], len-1); /* don't copy the final '&' char */ repeat = 1; } } else { repeat = 1; tcomment[0] = '\0'; } for (ii=0, jj=nstart; ii < nkey; ii++, jj++) { ffkeyn(keyroot, jj, keyname, status); if (repeat) ffpkyd(fptr, keyname, value[ii], decim, tcomment, status); else ffpkyd(fptr, keyname, value[ii], decim, comm[ii], status); if (*status > 0) return(*status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffptdm( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - column number */ int naxis, /* I - number of axes in the data array */ long naxes[], /* I - length of each data axis */ int *status) /* IO - error status */ /* write the TDIMnnn keyword describing the dimensionality of a column */ { char keyname[FLEN_KEYWORD], tdimstr[FLEN_VALUE], comm[FLEN_COMMENT]; char value[80], message[81]; int ii; long totalpix = 1, repeat; tcolumn *colptr; if (*status > 0) return(*status); if (colnum < 1 || colnum > 999) { ffpmsg("column number is out of range 1 - 999 (ffptdm)"); return(*status = BAD_COL_NUM); } if (naxis < 1) { ffpmsg("naxis is less than 1 (ffptdm)"); return(*status = BAD_DIMEN); } /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); if ( (fptr->Fptr)->hdutype != BINARY_TBL) { ffpmsg( "Error: The TDIMn keyword is only allowed in BINTABLE extensions (ffptdm)"); return(*status = NOT_BTABLE); } strcpy(tdimstr, "("); /* start constructing the TDIM value */ for (ii = 0; ii < naxis; ii++) { if (ii > 0) strcat(tdimstr, ","); /* append the comma separator */ if (naxes[ii] < 0) { ffpmsg("one or more TDIM values are less than 0 (ffptdm)"); return(*status = BAD_TDIM); } sprintf(value, "%ld", naxes[ii]); strcat(tdimstr, value); /* append the axis size */ totalpix *= naxes[ii]; } colptr = (fptr->Fptr)->tableptr; /* point to first column structure */ colptr += (colnum - 1); /* point to the specified column number */ if ((long) colptr->trepeat != totalpix) { /* There is an apparent inconsistency between TDIMn and TFORMn. */ /* The colptr->trepeat value may be out of date, so re-read */ /* the TFORMn keyword to be sure. */ ffkeyn("TFORM", colnum, keyname, status); /* construct TFORMn name */ ffgkys(fptr, keyname, value, NULL, status); /* read TFORMn keyword */ ffbnfm(value, NULL, &repeat, NULL, status); /* parse the repeat count */ if (*status > 0 || repeat != totalpix) { sprintf(message, "column vector length, %ld, does not equal TDIMn array size, %ld", (long) colptr->trepeat, totalpix); ffpmsg(message); return(*status = BAD_TDIM); } } strcat(tdimstr, ")" ); /* append the closing parenthesis */ strcpy(comm, "size of the multidimensional array"); ffkeyn("TDIM", colnum, keyname, status); /* construct TDIMn name */ ffpkys(fptr, keyname, tdimstr, comm, status); /* write the keyword */ return(*status); } /*--------------------------------------------------------------------------*/ int ffptdmll( fitsfile *fptr, /* I - FITS file pointer */ int colnum, /* I - column number */ int naxis, /* I - number of axes in the data array */ LONGLONG naxes[], /* I - length of each data axis */ int *status) /* IO - error status */ /* write the TDIMnnn keyword describing the dimensionality of a column */ { char keyname[FLEN_KEYWORD], tdimstr[FLEN_VALUE], comm[FLEN_COMMENT]; char value[80], message[81]; int ii; LONGLONG totalpix = 1, repeat; tcolumn *colptr; if (*status > 0) return(*status); if (colnum < 1 || colnum > 999) { ffpmsg("column number is out of range 1 - 999 (ffptdm)"); return(*status = BAD_COL_NUM); } if (naxis < 1) { ffpmsg("naxis is less than 1 (ffptdm)"); return(*status = BAD_DIMEN); } /* reset position to the correct HDU if necessary */ if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); else if ((fptr->Fptr)->datastart == DATA_UNDEFINED) if ( ffrdef(fptr, status) > 0) /* rescan header */ return(*status); if ( (fptr->Fptr)->hdutype != BINARY_TBL) { ffpmsg( "Error: The TDIMn keyword is only allowed in BINTABLE extensions (ffptdm)"); return(*status = NOT_BTABLE); } strcpy(tdimstr, "("); /* start constructing the TDIM value */ for (ii = 0; ii < naxis; ii++) { if (ii > 0) strcat(tdimstr, ","); /* append the comma separator */ if (naxes[ii] < 0) { ffpmsg("one or more TDIM values are less than 0 (ffptdm)"); return(*status = BAD_TDIM); } /* cast to double because the 64-bit int conversion character in */ /* sprintf is platform dependent ( %lld, %ld, %I64d ) */ sprintf(value, "%.0f", (double) naxes[ii]); strcat(tdimstr, value); /* append the axis size */ totalpix *= naxes[ii]; } colptr = (fptr->Fptr)->tableptr; /* point to first column structure */ colptr += (colnum - 1); /* point to the specified column number */ if ( colptr->trepeat != totalpix) { /* There is an apparent inconsistency between TDIMn and TFORMn. */ /* The colptr->trepeat value may be out of date, so re-read */ /* the TFORMn keyword to be sure. */ ffkeyn("TFORM", colnum, keyname, status); /* construct TFORMn name */ ffgkys(fptr, keyname, value, NULL, status); /* read TFORMn keyword */ ffbnfmll(value, NULL, &repeat, NULL, status); /* parse the repeat count */ if (*status > 0 || repeat != totalpix) { sprintf(message, "column vector length, %.0f, does not equal TDIMn array size, %.0f", (double) (colptr->trepeat), (double) totalpix); ffpmsg(message); return(*status = BAD_TDIM); } } strcat(tdimstr, ")" ); /* append the closing parenthesis */ strcpy(comm, "size of the multidimensional array"); ffkeyn("TDIM", colnum, keyname, status); /* construct TDIMn name */ ffpkys(fptr, keyname, tdimstr, comm, status); /* write the keyword */ return(*status); } /*--------------------------------------------------------------------------*/ int ffphps( fitsfile *fptr, /* I - FITS file pointer */ int bitpix, /* I - number of bits per data value pixel */ int naxis, /* I - number of axes in the data array */ long naxes[], /* I - length of each data axis */ int *status) /* IO - error status */ /* write STANDARD set of required primary header keywords */ { int simple = 1; /* does file conform to FITS standard? 1/0 */ long pcount = 0; /* number of group parameters (usually 0) */ long gcount = 1; /* number of random groups (usually 1 or 0) */ int extend = 1; /* may FITS file have extensions? */ ffphpr(fptr, simple, bitpix, naxis, naxes, pcount, gcount, extend, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffphpsll( fitsfile *fptr, /* I - FITS file pointer */ int bitpix, /* I - number of bits per data value pixel */ int naxis, /* I - number of axes in the data array */ LONGLONG naxes[], /* I - length of each data axis */ int *status) /* IO - error status */ /* write STANDARD set of required primary header keywords */ { int simple = 1; /* does file conform to FITS standard? 1/0 */ LONGLONG pcount = 0; /* number of group parameters (usually 0) */ LONGLONG gcount = 1; /* number of random groups (usually 1 or 0) */ int extend = 1; /* may FITS file have extensions? */ ffphprll(fptr, simple, bitpix, naxis, naxes, pcount, gcount, extend, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffphpr( fitsfile *fptr, /* I - FITS file pointer */ int simple, /* I - does file conform to FITS standard? 1/0 */ int bitpix, /* I - number of bits per data value pixel */ int naxis, /* I - number of axes in the data array */ long naxes[], /* I - length of each data axis */ LONGLONG pcount, /* I - number of group parameters (usually 0) */ LONGLONG gcount, /* I - number of random groups (usually 1 or 0) */ int extend, /* I - may FITS file have extensions? */ int *status) /* IO - error status */ /* write required primary header keywords */ { int ii; LONGLONG naxesll[20]; for (ii = 0; (ii < naxis) && (ii < 20); ii++) naxesll[ii] = naxes[ii]; ffphprll(fptr, simple, bitpix, naxis, naxesll, pcount, gcount, extend, status); return(*status); } /*--------------------------------------------------------------------------*/ int ffphprll( fitsfile *fptr, /* I - FITS file pointer */ int simple, /* I - does file conform to FITS standard? 1/0 */ int bitpix, /* I - number of bits per data value pixel */ int naxis, /* I - number of axes in the data array */ LONGLONG naxes[], /* I - length of each data axis */ LONGLONG pcount, /* I - number of group parameters (usually 0) */ LONGLONG gcount, /* I - number of random groups (usually 1 or 0) */ int extend, /* I - may FITS file have extensions? */ int *status) /* IO - error status */ /* write required primary header keywords */ { int ii; long longbitpix, tnaxes[20]; char name[FLEN_KEYWORD], comm[FLEN_COMMENT], message[FLEN_ERRMSG]; if (*status > 0) return(*status); if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); if ((fptr->Fptr)->headend != (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu] ) return(*status = HEADER_NOT_EMPTY); if (naxis != 0) /* never try to compress a null image */ { if ( (fptr->Fptr)->request_compress_type ) { for (ii = 0; ii < naxis; ii++) tnaxes[ii] = (long) naxes[ii]; /* write header for a compressed image */ imcomp_init_table(fptr, bitpix, naxis, tnaxes, 1, status); return(*status); } } if ((fptr->Fptr)->curhdu == 0) { /* write primary array header */ if (simple) strcpy(comm, "file does conform to FITS standard"); else strcpy(comm, "file does not conform to FITS standard"); ffpkyl(fptr, "SIMPLE", simple, comm, status); } else { /* write IMAGE extension header */ strcpy(comm, "IMAGE extension"); ffpkys(fptr, "XTENSION", "IMAGE", comm, status); } longbitpix = bitpix; /* test for the 3 special cases that represent unsigned integers */ if (longbitpix == USHORT_IMG) longbitpix = SHORT_IMG; else if (longbitpix == ULONG_IMG) longbitpix = LONG_IMG; else if (longbitpix == SBYTE_IMG) longbitpix = BYTE_IMG; if (longbitpix != BYTE_IMG && longbitpix != SHORT_IMG && longbitpix != LONG_IMG && longbitpix != LONGLONG_IMG && longbitpix != FLOAT_IMG && longbitpix != DOUBLE_IMG) { sprintf(message, "Illegal value for BITPIX keyword: %d", bitpix); ffpmsg(message); return(*status = BAD_BITPIX); } strcpy(comm, "number of bits per data pixel"); if (ffpkyj(fptr, "BITPIX", longbitpix, comm, status) > 0) return(*status); if (naxis < 0 || naxis > 999) { sprintf(message, "Illegal value for NAXIS keyword: %d", naxis); ffpmsg(message); return(*status = BAD_NAXIS); } strcpy(comm, "number of data axes"); ffpkyj(fptr, "NAXIS", naxis, comm, status); strcpy(comm, "length of data axis "); for (ii = 0; ii < naxis; ii++) { if (naxes[ii] < 0) { sprintf(message, "Illegal negative value for NAXIS%d keyword: %.0f", ii + 1, (double) (naxes[ii])); ffpmsg(message); return(*status = BAD_NAXES); } sprintf(&comm[20], "%d", ii + 1); ffkeyn("NAXIS", ii + 1, name, status); ffpkyj(fptr, name, naxes[ii], comm, status); } if ((fptr->Fptr)->curhdu == 0) /* the primary array */ { if (extend) { /* only write EXTEND keyword if value = true */ strcpy(comm, "FITS dataset may contain extensions"); ffpkyl(fptr, "EXTEND", extend, comm, status); } if (pcount < 0) { ffpmsg("pcount value is less than 0"); return(*status = BAD_PCOUNT); } else if (gcount < 1) { ffpmsg("gcount value is less than 1"); return(*status = BAD_GCOUNT); } else if (pcount > 0 || gcount > 1) { /* only write these keyword if non-standard values */ strcpy(comm, "random group records are present"); ffpkyl(fptr, "GROUPS", 1, comm, status); strcpy(comm, "number of random group parameters"); ffpkyj(fptr, "PCOUNT", pcount, comm, status); strcpy(comm, "number of random groups"); ffpkyj(fptr, "GCOUNT", gcount, comm, status); } /* write standard block of self-documentating comments */ ffprec(fptr, "COMMENT FITS (Flexible Image Transport System) format is defined in 'Astronomy", status); ffprec(fptr, "COMMENT and Astrophysics', volume 376, page 359; bibcode: 2001A&A...376..359H", status); } else /* an IMAGE extension */ { /* image extension; cannot have random groups */ if (pcount != 0) { ffpmsg("image extensions must have pcount = 0"); *status = BAD_PCOUNT; } else if (gcount != 1) { ffpmsg("image extensions must have gcount = 1"); *status = BAD_GCOUNT; } else { strcpy(comm, "required keyword; must = 0"); ffpkyj(fptr, "PCOUNT", 0, comm, status); strcpy(comm, "required keyword; must = 1"); ffpkyj(fptr, "GCOUNT", 1, comm, status); } } /* Write the BSCALE and BZERO keywords, if an unsigned integer image */ if (bitpix == USHORT_IMG) { strcpy(comm, "offset data range to that of unsigned short"); ffpkyg(fptr, "BZERO", 32768., 0, comm, status); strcpy(comm, "default scaling factor"); ffpkyg(fptr, "BSCALE", 1.0, 0, comm, status); } else if (bitpix == ULONG_IMG) { strcpy(comm, "offset data range to that of unsigned long"); ffpkyg(fptr, "BZERO", 2147483648., 0, comm, status); strcpy(comm, "default scaling factor"); ffpkyg(fptr, "BSCALE", 1.0, 0, comm, status); } else if (bitpix == SBYTE_IMG) { strcpy(comm, "offset data range to that of signed byte"); ffpkyg(fptr, "BZERO", -128., 0, comm, status); strcpy(comm, "default scaling factor"); ffpkyg(fptr, "BSCALE", 1.0, 0, comm, status); } return(*status); } /*--------------------------------------------------------------------------*/ int ffphtb(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG naxis1, /* I - width of row in the table */ LONGLONG naxis2, /* I - number of rows in the table */ int tfields, /* I - number of columns in the table */ char **ttype, /* I - name of each column */ long *tbcol, /* I - byte offset in row to each column */ char **tform, /* I - value of TFORMn keyword for each column */ char **tunit, /* I - value of TUNITn keyword for each column */ const char *extnmx, /* I - value of EXTNAME keyword, if any */ int *status) /* IO - error status */ /* Put required Header keywords into the ASCII TaBle: */ { int ii, ncols, gotmem = 0; long rowlen; /* must be 'long' because it is passed to ffgabc */ char tfmt[30], name[FLEN_KEYWORD], comm[FLEN_COMMENT], extnm[FLEN_VALUE]; if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); if (*status > 0) return(*status); else if ((fptr->Fptr)->headend != (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu] ) return(*status = HEADER_NOT_EMPTY); else if (naxis1 < 0) return(*status = NEG_WIDTH); else if (naxis2 < 0) return(*status = NEG_ROWS); else if (tfields < 0 || tfields > 999) return(*status = BAD_TFIELDS); extnm[0] = '\0'; if (extnmx) strncat(extnm, extnmx, FLEN_VALUE-1); rowlen = (long) naxis1; if (!tbcol || !tbcol[0] || (!naxis1 && tfields)) /* spacing not defined? */ { /* allocate mem for tbcol; malloc can have problems allocating small */ /* arrays, so allocate at least 20 bytes */ ncols = maxvalue(5, tfields); tbcol = (long *) calloc(ncols, sizeof(long)); if (tbcol) { gotmem = 1; /* calculate width of a row and starting position of each column. */ /* Each column will be separated by 1 blank space */ ffgabc(tfields, tform, 1, &rowlen, tbcol, status); } } ffpkys(fptr, "XTENSION", "TABLE", "ASCII table extension", status); ffpkyj(fptr, "BITPIX", 8, "8-bit ASCII characters", status); ffpkyj(fptr, "NAXIS", 2, "2-dimensional ASCII table", status); ffpkyj(fptr, "NAXIS1", rowlen, "width of table in characters", status); ffpkyj(fptr, "NAXIS2", naxis2, "number of rows in table", status); ffpkyj(fptr, "PCOUNT", 0, "no group parameters (required keyword)", status); ffpkyj(fptr, "GCOUNT", 1, "one data group (required keyword)", status); ffpkyj(fptr, "TFIELDS", tfields, "number of fields in each row", status); for (ii = 0; ii < tfields; ii++) /* loop over every column */ { if ( *(ttype[ii]) ) /* optional TTYPEn keyword */ { sprintf(comm, "label for field %3d", ii + 1); ffkeyn("TTYPE", ii + 1, name, status); ffpkys(fptr, name, ttype[ii], comm, status); } if (tbcol[ii] < 1 || tbcol[ii] > rowlen) *status = BAD_TBCOL; sprintf(comm, "beginning column of field %3d", ii + 1); ffkeyn("TBCOL", ii + 1, name, status); ffpkyj(fptr, name, tbcol[ii], comm, status); strcpy(tfmt, tform[ii]); /* required TFORMn keyword */ ffupch(tfmt); ffkeyn("TFORM", ii + 1, name, status); ffpkys(fptr, name, tfmt, "Fortran-77 format of field", status); if (tunit) { if (tunit[ii] && *(tunit[ii]) ) /* optional TUNITn keyword */ { ffkeyn("TUNIT", ii + 1, name, status); ffpkys(fptr, name, tunit[ii], "physical unit of field", status) ; } } if (*status > 0) break; /* abort loop on error */ } if (extnm[0]) /* optional EXTNAME keyword */ ffpkys(fptr, "EXTNAME", extnm, "name of this ASCII table extension", status); if (*status > 0) ffpmsg("Failed to write ASCII table header keywords (ffphtb)"); if (gotmem) free(tbcol); return(*status); } /*--------------------------------------------------------------------------*/ int ffphbn(fitsfile *fptr, /* I - FITS file pointer */ LONGLONG naxis2, /* I - number of rows in the table */ int tfields, /* I - number of columns in the table */ char **ttype, /* I - name of each column */ char **tform, /* I - value of TFORMn keyword for each column */ char **tunit, /* I - value of TUNITn keyword for each column */ const char *extnmx, /* I - value of EXTNAME keyword, if any */ LONGLONG pcount, /* I - size of the variable length heap area */ int *status) /* IO - error status */ /* Put required Header keywords into the Binary Table: */ { int ii, datatype, iread = 0; long repeat, width; LONGLONG naxis1; char tfmt[30], name[FLEN_KEYWORD], comm[FLEN_COMMENT], extnm[FLEN_VALUE]; char *cptr; if (*status > 0) return(*status); if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); if ((fptr->Fptr)->headend != (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu] ) return(*status = HEADER_NOT_EMPTY); else if (naxis2 < 0) return(*status = NEG_ROWS); else if (pcount < 0) return(*status = BAD_PCOUNT); else if (tfields < 0 || tfields > 999) return(*status = BAD_TFIELDS); extnm[0] = '\0'; if (extnmx) strncat(extnm, extnmx, FLEN_VALUE-1); ffpkys(fptr, "XTENSION", "BINTABLE", "binary table extension", status); ffpkyj(fptr, "BITPIX", 8, "8-bit bytes", status); ffpkyj(fptr, "NAXIS", 2, "2-dimensional binary table", status); naxis1 = 0; for (ii = 0; ii < tfields; ii++) /* sum the width of each field */ { ffbnfm(tform[ii], &datatype, &repeat, &width, status); if (datatype == TSTRING) naxis1 += repeat; /* one byte per char */ else if (datatype == TBIT) naxis1 += (repeat + 7) / 8; else if (datatype > 0) naxis1 += repeat * (datatype / 10); else if (tform[ii][0] == 'P' || tform[ii][1] == 'P') /* this is a 'P' variable length descriptor (neg. datatype) */ naxis1 += 8; else /* this is a 'Q' variable length descriptor (neg. datatype) */ naxis1 += 16; if (*status > 0) break; /* abort loop on error */ } ffpkyj(fptr, "NAXIS1", naxis1, "width of table in bytes", status); ffpkyj(fptr, "NAXIS2", naxis2, "number of rows in table", status); /* the initial value of PCOUNT (= size of the variable length array heap) should always be zero. If any variable length data is written, then the value of PCOUNT will be updated when the HDU is closed */ ffpkyj(fptr, "PCOUNT", 0, "size of special data area", status); ffpkyj(fptr, "GCOUNT", 1, "one data group (required keyword)", status); ffpkyj(fptr, "TFIELDS", tfields, "number of fields in each row", status); for (ii = 0; ii < tfields; ii++) /* loop over every column */ { if ( *(ttype[ii]) ) /* optional TTYPEn keyword */ { sprintf(comm, "label for field %3d", ii + 1); ffkeyn("TTYPE", ii + 1, name, status); ffpkys(fptr, name, ttype[ii], comm, status); } strcpy(tfmt, tform[ii]); /* required TFORMn keyword */ ffupch(tfmt); ffkeyn("TFORM", ii + 1, name, status); strcpy(comm, "data format of field"); ffbnfm(tfmt, &datatype, &repeat, &width, status); if (datatype == TSTRING) { strcat(comm, ": ASCII Character"); /* Do sanity check to see if an ASCII table format was used, */ /* e.g., 'A8' instead of '8A', or a bad unit width eg '8A9'. */ /* Don't want to return an error status, so write error into */ /* the keyword comment. */ cptr = strchr(tfmt,'A'); cptr++; if (cptr) iread = sscanf(cptr,"%ld", &width); if (iread == 1 && (width > repeat)) { if (repeat == 1) strcpy(comm, "ERROR?? USING ASCII TABLE SYNTAX BY MISTAKE??"); else strcpy(comm, "rAw FORMAT ERROR! UNIT WIDTH w > COLUMN WIDTH r"); } } else if (datatype == TBIT) strcat(comm, ": BIT"); else if (datatype == TBYTE) strcat(comm, ": BYTE"); else if (datatype == TLOGICAL) strcat(comm, ": 1-byte LOGICAL"); else if (datatype == TSHORT) strcat(comm, ": 2-byte INTEGER"); else if (datatype == TUSHORT) strcat(comm, ": 2-byte INTEGER"); else if (datatype == TLONG) strcat(comm, ": 4-byte INTEGER"); else if (datatype == TLONGLONG) strcat(comm, ": 8-byte INTEGER"); else if (datatype == TULONG) strcat(comm, ": 4-byte INTEGER"); else if (datatype == TFLOAT) strcat(comm, ": 4-byte REAL"); else if (datatype == TDOUBLE) strcat(comm, ": 8-byte DOUBLE"); else if (datatype == TCOMPLEX) strcat(comm, ": COMPLEX"); else if (datatype == TDBLCOMPLEX) strcat(comm, ": DOUBLE COMPLEX"); else if (datatype < 0) strcat(comm, ": variable length array"); if (abs(datatype) == TSBYTE) /* signed bytes */ { /* Replace the 'S' with an 'B' in the TFORMn code */ cptr = tfmt; while (*cptr != 'S') cptr++; *cptr = 'B'; ffpkys(fptr, name, tfmt, comm, status); /* write the TZEROn and TSCALn keywords */ ffkeyn("TZERO", ii + 1, name, status); strcpy(comm, "offset for signed bytes"); ffpkyg(fptr, name, -128., 0, comm, status); ffkeyn("TSCAL", ii + 1, name, status); strcpy(comm, "data are not scaled"); ffpkyg(fptr, name, 1., 0, comm, status); } else if (abs(datatype) == TUSHORT) { /* Replace the 'U' with an 'I' in the TFORMn code */ cptr = tfmt; while (*cptr != 'U') cptr++; *cptr = 'I'; ffpkys(fptr, name, tfmt, comm, status); /* write the TZEROn and TSCALn keywords */ ffkeyn("TZERO", ii + 1, name, status); strcpy(comm, "offset for unsigned integers"); ffpkyg(fptr, name, 32768., 0, comm, status); ffkeyn("TSCAL", ii + 1, name, status); strcpy(comm, "data are not scaled"); ffpkyg(fptr, name, 1., 0, comm, status); } else if (abs(datatype) == TULONG) { /* Replace the 'V' with an 'J' in the TFORMn code */ cptr = tfmt; while (*cptr != 'V') cptr++; *cptr = 'J'; ffpkys(fptr, name, tfmt, comm, status); /* write the TZEROn and TSCALn keywords */ ffkeyn("TZERO", ii + 1, name, status); strcpy(comm, "offset for unsigned integers"); ffpkyg(fptr, name, 2147483648., 0, comm, status); ffkeyn("TSCAL", ii + 1, name, status); strcpy(comm, "data are not scaled"); ffpkyg(fptr, name, 1., 0, comm, status); } else { ffpkys(fptr, name, tfmt, comm, status); } if (tunit) { if (tunit[ii] && *(tunit[ii]) ) /* optional TUNITn keyword */ { ffkeyn("TUNIT", ii + 1, name, status); ffpkys(fptr, name, tunit[ii], "physical unit of field", status); } } if (*status > 0) break; /* abort loop on error */ } if (extnm[0]) /* optional EXTNAME keyword */ ffpkys(fptr, "EXTNAME", extnm, "name of this binary table extension", status); if (*status > 0) ffpmsg("Failed to write binary table header keywords (ffphbn)"); return(*status); } /*--------------------------------------------------------------------------*/ int ffphext(fitsfile *fptr, /* I - FITS file pointer */ const char *xtensionx, /* I - value for the XTENSION keyword */ int bitpix, /* I - value for the BIXPIX keyword */ int naxis, /* I - value for the NAXIS keyword */ long naxes[], /* I - value for the NAXISn keywords */ LONGLONG pcount, /* I - value for the PCOUNT keyword */ LONGLONG gcount, /* I - value for the GCOUNT keyword */ int *status) /* IO - error status */ /* Put required Header keywords into a conforming extension: */ { char message[FLEN_ERRMSG],comm[81], name[20], xtension[FLEN_VALUE]; int ii; if (fptr->HDUposition != (fptr->Fptr)->curhdu) ffmahd(fptr, (fptr->HDUposition) + 1, NULL, status); if (*status > 0) return(*status); else if ((fptr->Fptr)->headend != (fptr->Fptr)->headstart[(fptr->Fptr)->curhdu] ) return(*status = HEADER_NOT_EMPTY); if (naxis < 0 || naxis > 999) { sprintf(message, "Illegal value for NAXIS keyword: %d", naxis); ffpmsg(message); return(*status = BAD_NAXIS); } xtension[0] = '\0'; strncat(xtension, xtensionx, FLEN_VALUE-1); ffpkys(fptr, "XTENSION", xtension, "extension type", status); ffpkyj(fptr, "BITPIX", bitpix, "number of bits per data pixel", status); ffpkyj(fptr, "NAXIS", naxis, "number of data axes", status); strcpy(comm, "length of data axis "); for (ii = 0; ii < naxis; ii++) { if (naxes[ii] < 0) { sprintf(message, "Illegal negative value for NAXIS%d keyword: %.0f", ii + 1, (double) (naxes[ii])); ffpmsg(message); return(*status = BAD_NAXES); } sprintf(&comm[20], "%d", ii + 1); ffkeyn("NAXIS", ii + 1, name, status); ffpkyj(fptr, name, naxes[ii], comm, status); } ffpkyj(fptr, "PCOUNT", pcount, " ", status); ffpkyj(fptr, "GCOUNT", gcount, " ", status); if (*status > 0) ffpmsg("Failed to write extension header keywords (ffphext)"); return(*status); } /*--------------------------------------------------------------------------*/ int ffi2c(LONGLONG ival, /* I - value to be converted to a string */ char *cval, /* O - character string representation of the value */ int *status) /* IO - error status */ /* convert value to a null-terminated formatted string. */ { if (*status > 0) /* inherit input status value if > 0 */ return(*status); cval[0] = '\0'; #if defined(_MSC_VER) /* Microsoft Visual C++ 6.0 uses '%I64d' syntax for 8-byte integers */ if (sprintf(cval, "%I64d", ival) < 0) #elif (USE_LL_SUFFIX == 1) if (sprintf(cval, "%lld", ival) < 0) #else if (sprintf(cval, "%ld", ival) < 0) #endif { ffpmsg("Error in ffi2c converting integer to string"); *status = BAD_I2C; } return(*status); } /*--------------------------------------------------------------------------*/ int ffl2c(int lval, /* I - value to be converted to a string */ char *cval, /* O - character string representation of the value */ int *status) /* IO - error status ) */ /* convert logical value to a null-terminated formatted string. If the input value == 0, then the output character is the letter F, else the output character is the letter T. The output string is null terminated. */ { if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (lval) strcpy(cval,"T"); else strcpy(cval,"F"); return(*status); } /*--------------------------------------------------------------------------*/ int ffs2c(const char *instr, /* I - null terminated input string */ char *outstr, /* O - null terminated quoted output string */ int *status) /* IO - error status */ /* convert an input string to a quoted string. Leading spaces are significant. FITS string keyword values must be at least 8 chars long so pad out string with spaces if necessary. Example: km/s ==> 'km/s ' Single quote characters in the input string will be replace by two single quote characters. e.g., o'brian ==> 'o''brian' */ { size_t len, ii, jj; if (*status > 0) /* inherit input status value if > 0 */ return(*status); if (!instr) /* a null input pointer?? */ { strcpy(outstr, "''"); /* a null FITS string */ return(*status); } outstr[0] = '\''; /* start output string with a quote */ len = strlen(instr); if (len > 68) len = 68; /* limit input string to 68 chars */ for (ii=0, jj=1; ii < len && jj < 69; ii++, jj++) { outstr[jj] = instr[ii]; /* copy each char from input to output */ if (instr[ii] == '\'') { jj++; outstr[jj]='\''; /* duplicate any apostrophies in the input */ } } for (; jj < 9; jj++) /* pad string so it is at least 8 chars long */ outstr[jj] = ' '; if (jj == 70) /* only occurs if the last char of string was a quote */ outstr[69] = '\0'; else { outstr[jj] = '\''; /* append closing quote character */ outstr[jj+1] = '\0'; /* terminate the string */ } return(*status); } /*--------------------------------------------------------------------------*/ int ffr2f(float fval, /* I - value to be converted to a string */ int decim, /* I - number of decimal places to display */ char *cval, /* O - character string representation of the value */ int *status) /* IO - error status */ /* convert float value to a null-terminated F format string */ { char *cptr; if (*status > 0) /* inherit input status value if > 0 */ return(*status); cval[0] = '\0'; if (decim < 0) { ffpmsg("Error in ffr2f: no. of decimal places < 0"); return(*status = BAD_DECIM); } if (sprintf(cval, "%.*f", decim, fval) < 0) { ffpmsg("Error in ffr2f converting float to string"); *status = BAD_F2C; } /* replace comma with a period (e.g. in French locale) */ if ( (cptr = strchr(cval, ','))) *cptr = '.'; /* test if output string is 'NaN', 'INDEF', or 'INF' */ if (strchr(cval, 'N')) { ffpmsg("Error in ffr2f: float value is a NaN or INDEF"); *status = BAD_F2C; } return(*status); } /*--------------------------------------------------------------------------*/ int ffr2e(float fval, /* I - value to be converted to a string */ int decim, /* I - number of decimal places to display */ char *cval, /* O - character string representation of the value */ int *status) /* IO - error status */ /* convert float value to a null-terminated exponential format string */ { char *cptr; if (*status > 0) /* inherit input status value if > 0 */ return(*status); cval[0] = '\0'; if (decim < 0) { /* use G format if decim is negative */ if ( sprintf(cval, "%.*G", -decim, fval) < 0) { ffpmsg("Error in ffr2e converting float to string"); *status = BAD_F2C; } else { /* test if E format was used, and there is no displayed decimal */ if ( !strchr(cval, '.') && strchr(cval,'E') ) { /* reformat value with a decimal point and single zero */ if ( sprintf(cval, "%.1E", fval) < 0) { ffpmsg("Error in ffr2e converting float to string"); *status = BAD_F2C; } return(*status); } } } else { if ( sprintf(cval, "%.*E", decim, fval) < 0) { ffpmsg("Error in ffr2e converting float to string"); *status = BAD_F2C; } } if (*status <= 0) { /* replace comma with a period (e.g. in French locale) */ if ( (cptr = strchr(cval, ','))) *cptr = '.'; /* test if output string is 'NaN', 'INDEF', or 'INF' */ if (strchr(cval, 'N')) { ffpmsg("Error in ffr2e: float value is a NaN or INDEF"); *status = BAD_F2C; } else if ( !strchr(cval, '.') && !strchr(cval,'E') ) { /* add decimal point if necessary to distinquish from integer */ strcat(cval, "."); } } return(*status); } /*--------------------------------------------------------------------------*/ int ffd2f(double dval, /* I - value to be converted to a string */ int decim, /* I - number of decimal places to display */ char *cval, /* O - character string representation of the value */ int *status) /* IO - error status */ /* convert double value to a null-terminated F format string */ { char *cptr; if (*status > 0) /* inherit input status value if > 0 */ return(*status); cval[0] = '\0'; if (decim < 0) { ffpmsg("Error in ffd2f: no. of decimal places < 0"); return(*status = BAD_DECIM); } if (sprintf(cval, "%.*f", decim, dval) < 0) { ffpmsg("Error in ffd2f converting double to string"); *status = BAD_F2C; } /* replace comma with a period (e.g. in French locale) */ if ( (cptr = strchr(cval, ','))) *cptr = '.'; /* test if output string is 'NaN', 'INDEF', or 'INF' */ if (strchr(cval, 'N')) { ffpmsg("Error in ffd2f: double value is a NaN or INDEF"); *status = BAD_F2C; } return(*status); } /*--------------------------------------------------------------------------*/ int ffd2e(double dval, /* I - value to be converted to a string */ int decim, /* I - number of decimal places to display */ char *cval, /* O - character string representation of the value */ int *status) /* IO - error status */ /* convert double value to a null-terminated exponential format string. */ { char *cptr; if (*status > 0) /* inherit input status value if > 0 */ return(*status); cval[0] = '\0'; if (decim < 0) { /* use G format if decim is negative */ if ( sprintf(cval, "%.*G", -decim, dval) < 0) { ffpmsg("Error in ffd2e converting float to string"); *status = BAD_F2C; } else { /* test if E format was used, and there is no displayed decimal */ if ( !strchr(cval, '.') && strchr(cval,'E') ) { /* reformat value with a decimal point and single zero */ if ( sprintf(cval, "%.1E", dval) < 0) { ffpmsg("Error in ffd2e converting float to string"); *status = BAD_F2C; } return(*status); } } } else { if ( sprintf(cval, "%.*E", decim, dval) < 0) { ffpmsg("Error in ffd2e converting float to string"); *status = BAD_F2C; } } if (*status <= 0) { /* replace comma with a period (e.g. in French locale) */ if ( (cptr = strchr(cval, ','))) *cptr = '.'; /* test if output string is 'NaN', 'INDEF', or 'INF' */ if (strchr(cval, 'N')) { ffpmsg("Error in ffd2e: double value is a NaN or INDEF"); *status = BAD_F2C; } else if ( !strchr(cval, '.') && !strchr(cval,'E') ) { /* add decimal point if necessary to distinquish from integer */ strcat(cval, "."); } } return(*status); } healpy-1.8.1/MANIFEST.in0000644000175000017500000000110612351601276015010 0ustar zoncazonca00000000000000recursive-include healpy/data *.fits recursive-include healpy/test/data * exclude healpy/test/data/ipython* exclude cfitsio/*pdf cfitsio/*ps cfitsio/*doc cfitsio/*tex prune cfitsio/docs exclude *.so exclude *.a include COPYING CITATION INSTALL.rst README.rst MANIFEST.in CHANGELOG.rst ez_setup.py pykg_config.py include healpy/src/_healpy_utils.h include healpy/src/_query_disc.cpp include healpy/src/_sphtools.cpp include healpy/src/_pixelfunc.cpp include healpy/src/_common.pxd include healpy/src/_query_disc.pyx include healpy/src/_sphtools.pyx include healpy/src/_pixelfunc.pyx healpy-1.8.1/ez_setup.py0000644000175000017500000002413412336442722015472 0ustar zoncazonca00000000000000#!/usr/bin/env python """Bootstrap setuptools installation To use setuptools in your package's setup.py, include this file in the same directory and add this to the top of your setup.py:: from ez_setup import use_setuptools use_setuptools() To require a specific version of setuptools, set a download mirror, or use an alternate download directory, simply supply the appropriate options to ``use_setuptools()``. This file can also be run as a script to install or upgrade setuptools. """ import os import shutil import sys import tempfile import zipfile import optparse import subprocess import platform import textwrap import contextlib from distutils import log try: from site import USER_SITE except ImportError: USER_SITE = None DEFAULT_VERSION = "3.5.1" DEFAULT_URL = "https://pypi.python.org/packages/source/s/setuptools/" def _python_cmd(*args): """ Return True if the command succeeded. """ args = (sys.executable,) + args return subprocess.call(args) == 0 def _install(archive_filename, install_args=()): with archive_context(archive_filename): # installing log.warn('Installing Setuptools') if not _python_cmd('setup.py', 'install', *install_args): log.warn('Something went wrong during the installation.') log.warn('See the error message above.') # exitcode will be 2 return 2 def _build_egg(egg, archive_filename, to_dir): with archive_context(archive_filename): # building an egg log.warn('Building a Setuptools egg in %s', to_dir) _python_cmd('setup.py', '-q', 'bdist_egg', '--dist-dir', to_dir) # returning the result log.warn(egg) if not os.path.exists(egg): raise IOError('Could not build the egg.') def get_zip_class(): """ Supplement ZipFile class to support context manager for Python 2.6 """ class ContextualZipFile(zipfile.ZipFile): def __enter__(self): return self def __exit__(self, type, value, traceback): self.close return zipfile.ZipFile if hasattr(zipfile.ZipFile, '__exit__') else \ ContextualZipFile @contextlib.contextmanager def archive_context(filename): # extracting the archive tmpdir = tempfile.mkdtemp() log.warn('Extracting in %s', tmpdir) old_wd = os.getcwd() try: os.chdir(tmpdir) with get_zip_class()(filename) as archive: archive.extractall() # going in the directory subdir = os.path.join(tmpdir, os.listdir(tmpdir)[0]) os.chdir(subdir) log.warn('Now working in %s', subdir) yield finally: os.chdir(old_wd) shutil.rmtree(tmpdir) def _do_download(version, download_base, to_dir, download_delay): egg = os.path.join(to_dir, 'setuptools-%s-py%d.%d.egg' % (version, sys.version_info[0], sys.version_info[1])) if not os.path.exists(egg): archive = download_setuptools(version, download_base, to_dir, download_delay) _build_egg(egg, archive, to_dir) sys.path.insert(0, egg) # Remove previously-imported pkg_resources if present (see # https://bitbucket.org/pypa/setuptools/pull-request/7/ for details). if 'pkg_resources' in sys.modules: del sys.modules['pkg_resources'] import setuptools setuptools.bootstrap_install_from = egg def use_setuptools(version=DEFAULT_VERSION, download_base=DEFAULT_URL, to_dir=os.curdir, download_delay=15): to_dir = os.path.abspath(to_dir) rep_modules = 'pkg_resources', 'setuptools' imported = set(sys.modules).intersection(rep_modules) try: import pkg_resources except ImportError: return _do_download(version, download_base, to_dir, download_delay) try: pkg_resources.require("setuptools>=" + version) return except pkg_resources.DistributionNotFound: return _do_download(version, download_base, to_dir, download_delay) except pkg_resources.VersionConflict as VC_err: if imported: msg = textwrap.dedent(""" The required version of setuptools (>={version}) is not available, and can't be installed while this script is running. Please install a more recent version first, using 'easy_install -U setuptools'. (Currently using {VC_err.args[0]!r}) """).format(VC_err=VC_err, version=version) sys.stderr.write(msg) sys.exit(2) # otherwise, reload ok del pkg_resources, sys.modules['pkg_resources'] return _do_download(version, download_base, to_dir, download_delay) def _clean_check(cmd, target): """ Run the command to download target. If the command fails, clean up before re-raising the error. """ try: subprocess.check_call(cmd) except subprocess.CalledProcessError: if os.access(target, os.F_OK): os.unlink(target) raise def download_file_powershell(url, target): """ Download the file at url to target using Powershell (which will validate trust). Raise an exception if the command cannot complete. """ target = os.path.abspath(target) cmd = [ 'powershell', '-Command', "(new-object System.Net.WebClient).DownloadFile(%(url)r, %(target)r)" % vars(), ] _clean_check(cmd, target) def has_powershell(): if platform.system() != 'Windows': return False cmd = ['powershell', '-Command', 'echo test'] devnull = open(os.path.devnull, 'wb') try: try: subprocess.check_call(cmd, stdout=devnull, stderr=devnull) except Exception: return False finally: devnull.close() return True download_file_powershell.viable = has_powershell def download_file_curl(url, target): cmd = ['curl', url, '--silent', '--output', target] _clean_check(cmd, target) def has_curl(): cmd = ['curl', '--version'] devnull = open(os.path.devnull, 'wb') try: try: subprocess.check_call(cmd, stdout=devnull, stderr=devnull) except Exception: return False finally: devnull.close() return True download_file_curl.viable = has_curl def download_file_wget(url, target): cmd = ['wget', url, '--quiet', '--output-document', target] _clean_check(cmd, target) def has_wget(): cmd = ['wget', '--version'] devnull = open(os.path.devnull, 'wb') try: try: subprocess.check_call(cmd, stdout=devnull, stderr=devnull) except Exception: return False finally: devnull.close() return True download_file_wget.viable = has_wget def download_file_insecure(url, target): """ Use Python to download the file, even though it cannot authenticate the connection. """ try: from urllib.request import urlopen except ImportError: from urllib2 import urlopen src = dst = None try: src = urlopen(url) # Read/write all in one block, so we don't create a corrupt file # if the download is interrupted. data = src.read() dst = open(target, "wb") dst.write(data) finally: if src: src.close() if dst: dst.close() download_file_insecure.viable = lambda: True def get_best_downloader(): downloaders = [ download_file_powershell, download_file_curl, download_file_wget, download_file_insecure, ] for dl in downloaders: if dl.viable(): return dl def download_setuptools(version=DEFAULT_VERSION, download_base=DEFAULT_URL, to_dir=os.curdir, delay=15, downloader_factory=get_best_downloader): """ Download setuptools from a specified location and return its filename `version` should be a valid setuptools version number that is available as an egg for download under the `download_base` URL (which should end with a '/'). `to_dir` is the directory where the egg will be downloaded. `delay` is the number of seconds to pause before an actual download attempt. ``downloader_factory`` should be a function taking no arguments and returning a function for downloading a URL to a target. """ # making sure we use the absolute path to_dir = os.path.abspath(to_dir) zip_name = "setuptools-%s.zip" % version url = download_base + zip_name saveto = os.path.join(to_dir, zip_name) if not os.path.exists(saveto): # Avoid repeated downloads log.warn("Downloading %s", url) downloader = downloader_factory() downloader(url, saveto) return os.path.realpath(saveto) def _build_install_args(options): """ Build the arguments to 'python setup.py install' on the setuptools package """ return ['--user'] if options.user_install else [] def _parse_args(): """ Parse the command line for options """ parser = optparse.OptionParser() parser.add_option( '--user', dest='user_install', action='store_true', default=False, help='install in user site package (requires Python 2.6 or later)') parser.add_option( '--download-base', dest='download_base', metavar="URL", default=DEFAULT_URL, help='alternative URL from where to download the setuptools package') parser.add_option( '--insecure', dest='downloader_factory', action='store_const', const=lambda: download_file_insecure, default=get_best_downloader, help='Use internal, non-validating downloader' ) parser.add_option( '--version', help="Specify which version to download", default=DEFAULT_VERSION, ) options, args = parser.parse_args() # positional arguments are ignored return options def main(): """Install or upgrade setuptools and EasyInstall""" options = _parse_args() archive = download_setuptools( version=options.version, download_base=options.download_base, downloader_factory=options.downloader_factory, ) return _install(archive, _build_install_args(options)) if __name__ == '__main__': sys.exit(main())