debian/0000755000000000000000000000000012172323132007162 5ustar debian/menu0000644000000000000000000000020112062151044010041 0ustar ?package(invesalius):needs="X11" section="Applications/Science/Medicine"\ title="invesalius" command="/usr/bin/invesalius-3.0" debian/invesalius.install0000644000000000000000000000224412116034657012747 0ustar invesalius-3.0 /usr/bin/ icons /usr/share/invesalius locale /usr/share/invesalius/ presets /usr/share/invesalius/ docs/user_guide_pt_BR.pdf /usr/share/invesalius/docs/ invesalius/session.py /usr/share/invesalius/invesalius invesalius/version.py /usr/share/invesalius/invesalius invesalius/presets.py /usr/share/invesalius/invesalius invesalius/style.py /usr/share/invesalius/invesalius invesalius/utils.py /usr/share/invesalius/invesalius invesalius/constants.py /usr/share/invesalius/invesalius invesalius/math_utils.py /usr/share/invesalius/invesalius invesalius/invesalius.py /usr/share/invesalius/invesalius invesalius/i18n.py /usr/share/invesalius/invesalius invesalius/project.py /usr/share/invesalius/invesalius invesalius/control.py /usr/share/invesalius/invesalius invesalius/reader/*.py /usr/share/invesalius/invesalius/reader/ invesalius/net/*.py /usr/share/invesalius/invesalius/net/ invesalius/gui/*.py /usr/share/invesalius/invesalius/gui/ invesalius/gui/widgets/*.py /usr/share/invesalius/invesalius/gui/widgets/ invesalius/data/*.py /usr/share/invesalius/invesalius/data/ debian/invesalius-3.0.desktop /usr/share/applications debian/invesalius.xpm /usr/share/pixmaps debian/invesalius.manpages0000644000000000000000000000001312102504620013047 0ustar debian/*.1 debian/source/0000755000000000000000000000000012172322160010462 5ustar debian/source/format0000644000000000000000000000001411301174376011677 0ustar 3.0 (quilt) debian/docs0000644000000000000000000000007312102167642010042 0ustar AUTHORS.txt HEADER.txt LICENSE.pt.txt LICENSE.txt NEWS.txt debian/dirs0000644000000000000000000000001011341000132010022 0ustar usr/bin debian/copyright0000644000000000000000000000402312126564234011125 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: InVesalius Upstream-Contact: InVesalius Team Tatiana Al-Chueyr Thiago Franco de Moraes Paulo Henrique Junqueira Amorim Guilherme Cesar Soares Ruppert Fabio de Souza Azevedo Jorge Vicente Lopes da Silva Source: https://github.com/invesalius/invesalius3.git Files: * Copyright: © 2008-2010 Centro de Tecnologia da Informação Renato Archer Tatiana Al-Chueyr Pereira Martins , Paulo Henrique Junqueira Amorim , Thiago Franco de Moraes License: GPL-2 Files: presets/raycasting/* Copyright: © 2003-2010 Antoine Rosset License: LGPL-3.0 On Debian GNU/Linux systems the full text of LGPL-3 license can be found at /usr/share/common-licenses/LGPL-3 Comment: These files came from OsiriX (http://www.osirix-viewer.com/). OsiriX is licensed as LGPL-3 and these files seem to be as well, but it is not explicit, so I'm not sure. Files: debian/* Copyright: © 2009-2010 Centro de Tecnologia da Informação Renato Archer Andreas Tille License: GPL-2 License: GPL-2 This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; version 2 of the License. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . On Debian systems, you can find the GPL license version 2 in: /usr/share/common-licenses/GPL-2 debian/invesalius-3.0.10000644000000000000000000000350112126564234011734 0ustar .TH InVesalius 1 "January 2013" .SH NAME InVesalius \- 3D medical imaging reconstruction software .SH SYNOPSIS .B invesalius-3.0 [\-d] [\-i ] .B invesalius-3.0 [\-d] [] .SH DESCRIPTION InVesalius generates 3D medical imaging reconstructions based on a sequence of 2D DICOM files acquired with CT or MRI equipments. InVesalius is internationalized (currently available in English, Portuguese, French, German, Spanish, Greek and Chinese) and provides several tools: .IP \(bu 4 DICOM support including: (a) ACR-NEMA version 1 and 2; (b) DICOM version 3.0 (including various encodings of JPEG \- lossless and lossy \-, RLE) .IP \(bu 4 Image manipulation features (zoom, pan, rotation, brightness/contrast, etc.) .IP \(bu 4 Segmentation based on 2D slices .IP \(bu 4 Pre-defined threshold ranges according to tissue of interest .IP \(bu 4 Edition tools (similar to Paint Brush) based on 2D slices .IP \(bu 4 3D surface creation .IP \(bu 4 3D surface connectivity tools .IP \(bu 4 3D surface exportation (including: binary STL, OBJ, VRML, Inventor) .IP \(bu 4 High-quality volume rendering projection .IP \(bu 4 Pre-defined volume rendering presets .IP \(bu 4 Volume rendering crop plane .IP \(bu 4 Picture exportation (including: BMP, TIFF, JPG, PostScript, POV-Ray) .SS Homepage http://www.cti.gov.br/invesalius/ https://github.com/invesalius/invesalius3 .SH OPTIONS .TP .B \-h display a short help text .TP .B \-d, \-\-debug debug mode. Causes .B InVesalius to print debugging messages. .TP \fB\-i \fR .B InVesalius opens a . In the presence of more than one series in the given folder, .B InVesalius opens the larger one. .SH AUTHORS See \fIAUTHORS\fP for authors and contributors. This manual page was written by Thiago Franco de Moraes . debian/rules0000755000000000000000000000164212172322052010245 0ustar #!/usr/bin/make -f # debian/rules for invesalius # Andreas Tille # GPL package=invesalius PYMODDIR := /usr/lib/$(shell pyversions -r) TARGET = $(CURDIR)/debian/$(package) # shared library versions, option 1 version=2.0.5 major=2 %: dh $@ --with python2 override_dh_auto_clean: dh_auto_clean rm -f invesalius-3.0 override_dh_compress : dh_compress --exclude=LICENSE.pt.txt --exclude=.inv3 create-launcher: echo '#!/bin/sh' > invesalius-3.0 echo 'export INVESALIUS_LIBRARY_PATH="/usr/share/invesalius/invesalius"' >> invesalius-3.0 echo 'cd $$INVESALIUS_LIBRARY_PATH' >> invesalius-3.0 echo 'python invesalius.py $$@' >> invesalius-3.0 override_dh_install: create-launcher dh_install override_dh_builddeb: dh_builddeb -- -Z xz get-orig-source: mkdir -p ../tarballs uscan --verbose --force-download --repack --rename --destdir=../tarballs .PHONY: override_dh_auto_clean override_dh_install debian/invesalius.lintian-overrides0000644000000000000000000000024412102167642014731 0ustar # There is a GPLv2 license file translated to portuguese because it's necessary # to the brazilian government recognize the license. invesalius: extra-license-file debian/patches/0000755000000000000000000000000012172322160010611 5ustar debian/patches/10_sample_path.patch0000644000000000000000000000074212126564234014443 0ustar diff --git a/invesalius/constants.py b/invesalius/constants.py index 3dfc5df..610c3bd 100644 --- a/invesalius/constants.py +++ b/invesalius/constants.py @@ -295,7 +295,7 @@ WINDOW_LEVEL = {_("Abdomen"):(350,50), REDUCE_IMAGEDATA_QUALITY = 0 ICON_DIR = os.path.abspath(os.path.join('..', 'icons')) -SAMPLE_DIR = os.path.abspath(os.path.join('..', 'samples')) +SAMPLE_DIR = "/usr/share/doc/invesalius-examples/examples/" DOC_DIR = os.path.abspath(os.path.join('..', 'docs')) debian/patches/series0000644000000000000000000000007012126564234012034 0ustar 10_change_casmoothing_import.patch 10_sample_path.patch debian/patches/10_change_casmoothing_import.patch0000644000000000000000000000072712104701353017352 0ustar Author: Thiago Franco de Moraes Date: Mon, 10 Dec 2012 14:22:46 -0200 Description: Upstream has ca_smoothing integrated and Debian have it separated in another package (python-casmoothing), so the import must be changed. --- a/invesalius/data/surface.py +++ b/invesalius/data/surface.py @@ -37,7 +37,7 @@ import surface_process import utils as utl import vtk_utils as vu try: - import data.ca_smoothing as ca_smoothing + import ca_smoothing except: pass debian/links0000644000000000000000000000013512104701353010224 0ustar usr/share/invesalius/docs/user_guide_pt_BR.pdf usr/share/doc/invesalius/user_guide_pt_BR.pdf debian/invesalius-examples.examples0000644000000000000000000000002512104402120014703 0ustar samples/Cranium.inv3 debian/watch0000644000000000000000000000015012102167642010214 0ustar version=3 opts=uversionmangle=s/-/~/ \ https://github.com/invesalius/invesalius3/tags .*/v(.+)\.tar\.gz debian/changelog0000644000000000000000000000235612172322207011044 0ustar invesalius (3.0~b4-3) unstable; urgency=low [ Thiago Franco de Moraes ] * debian/control: Added python-psutil as dependency (it was missing). [ Andreas Tille ] * debian/control: `cme fix dpkg-control` to normalise control field and thus make it more easy to read * debian/rules: use xz compression -- Thiago Franco de Moraes Fri, 19 Jul 2013 09:11:19 -0300 invesalius (3.0~b4-2) unstable; urgency=low * debian/control: Removed libvtk and libgdcm as dependency, relying only in python-vtk and python-gdcm. Closes: #708259 * debian/control: Converted the package to dh_python2. Removed python-support from Build-Depends-Indep. Dropped XB-Python-Version. Added X-Python-Version. debian/pyversion: Removed to convert the package to dh_python2. Closes: #708258 * debian/control: Setting wxPython 2.8.12 as minimun wxPython version. It was necessary due to errors in InVesalius with previous versions of wxPython. Closes: #708260 -- Thiago Franco de Moraes Mon, 20 May 2013 08:47:42 -0300 invesalius (3.0~b4-1) unstable; urgency=low * Initial release (Closes: #584920) -- Thiago Franco de Moraes Mon, 04 Mar 2013 09:45:38 -0300 debian/compat0000644000000000000000000000000212103464317010365 0ustar 9 debian/invesalius-3.0.desktop0000755000000000000000000000032312062151044013235 0ustar [Desktop Entry] Type=Application Name=InVesalius-3.0 GenericName=InVesalius-3.0 Exec=invesalius-3.0 Terminal=false Icon=invesalius Categories=Education;Graphics;Science;DataVisualization;MedicalSoftware;Viewer; debian/invesalius.xpm0000644000000000000000000002603212077510073012103 0ustar /* XPM */ static char * invesalius_xpm[] = { "32 32 566 2", " c None", ". c #424242", "+ c #131313", "@ c #131314", "# c #131414", "$ c #141414", "% c #353535", "& c #020202", "* c #020303", "= c #020304", "- c #0B131B", "; c #0B1C2C", "> c #091E32", ", c #061D33", "' c #0B2136", ") c #13293D", "! c #132534", "~ c #081118", "{ c 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debian/control0000644000000000000000000000447612172321477010612 0ustar Source: invesalius Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Thiago Franco de Moraes Section: graphics Priority: optional Build-Depends-Indep: debhelper (>= 9), python, python-casmoothing Standards-Version: 3.9.4 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/invesalius/trunk/ Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/invesalius/trunk/ Homepage: http://www.cti.gov.br/invesalius/ X-Python-Version: 2.7 Package: invesalius Architecture: all Depends: ${python:Depends}, ${misc:Depends}, python-numpy, python-scipy, python-wxgtk2.8 (>= 2.8.12), python-imaging, python-vtk, python-gdcm, python-vtkgdcm, python-casmoothing, python-nibabel, python-serial, python-psutil Description: 3D medical imaging reconstruction software InVesalius generates 3D medical imaging reconstructions based on a sequence of 2D DICOM files acquired with CT or MRI equipments. InVesalius is internationalized (currently available in English, Portuguese, French, German, Spanish, Greek and Chinese) and provides several tools: * DICOM support including: (a) ACR-NEMA version 1 and 2; (b) DICOM version 3.0 (including various encodings of JPEG -lossless and lossy-, RLE) * Image manipulation features (zoom, pan, rotation, brightness/contrast, etc) * Segmentation based on 2D slices * Pre-defined threshold ranges according to tissue of interest * Edition tools (similar to Paint Brush) based on 2D slices * 3D surface creation * 3D surface connectivity tools * 3D surface exportation (including: binary STL, OBJ, VRML, Inventor) * High-quality volume rendering projection * Pre-defined volume rendering presets * Volume rendering crop plane * Picture exportation (including: BMP, TIFF, JPG, PostScript, POV-Ray) Package: invesalius-examples Architecture: all Depends: ${misc:Depends} Description: examples for 3D medical imaging reconstruction software InVesalius generates 3D medical imaging reconstructions based on a sequence of 2D DICOM files acquired with CT or MRI equipments. . This package contains a sample file to open in InVesalius.