debian/0000755000000000000000000000000012261170240007161 5ustar debian/watch0000644000000000000000000000032412250722677010230 0ustar version=3 opts=uversionmangle=s/_/./g;s/^(\S+-x86(?:\.64)?(?:-rhel)?)$/0.0.$1/;s/-src$// \ http://lcni.uoregon.edu/~jolinda/MRIConvert/ \ (?:|.*/)MRIConvert[_\-](\d\S*)\.(?:tar\.xz|txz|tar\.bz2|tbz2|tar\.gz|tgz) debian/compat0000644000000000000000000000000211726541742010375 0ustar 9 debian/copyright0000644000000000000000000000650312105070374011124 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: MRIConvert Upstream-Contact: Jolinda Smith Source: http://lcni.uoregon.edu/~jolinda/MRIConvert/ Files-Excluded: Makefile CMakeCache.txt MRIConvert Mcverter Files: * Copyright: 2010 Jolinda Smith Lewis Center for Neuroimaging at the University of Oregon License: GPL-3 MRIConvert was developed at the Lewis Center for Neuroimaging at the University of Oregon. All LCNI software is available free of charge under the GNU General Public License (GPL). . This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see . . On Debian systems, the full text of the GPL is available in file /usr/share/common-licenses/GPL-3. Files: nifti1.h Copyright: 2003 Robert W Cox License: PD /***************************************************************************** ** This file defines the "NIFTI-1" header format. ** ** It is derived from 2 meetings at the NIH (31 Mar 2003 and ** ** 02 Sep 2003) of the Data Format Working Group (DFWG), ** ** chartered by the NIfTI (Neuroimaging Informatics Technology ** ** Initiative) at the National Institutes of Health (NIH). ** **--------------------------------------------------------------** ** Neither the National Institutes of Health (NIH), the DFWG, ** ** nor any of the members or employees of these institutions ** ** imply any warranty of usefulness of this material for any ** ** purpose, and do not assume any liability for damages, ** ** incidental or otherwise, caused by any use of this document. ** ** If these conditions are not acceptable, do not use this! ** **--------------------------------------------------------------** ** Author: Robert W Cox (NIMH, Bethesda) ** ** Advisors: John Ashburner (FIL, London), ** ** Stephen Smith (FMRIB, Oxford), ** ** Mark Jenkinson (FMRIB, Oxford) ** ******************************************************************************/ . /*---------------------------------------------------------------------------*/ /* Note that the ANALYZE 7.5 file header (dbh.h) is * (c) Copyright 1986-1995 * Biomedical Imaging Resource * Mayo Foundation * Incorporation of components of dbh.h are by permission of the * Mayo Foundation. * * Changes from the ANALYZE 7.5 file header in this file are released to the * public domain, including the functional comments and any amusing asides. -----------------------------------------------------------------------------*/ debian/control0000644000000000000000000000163612261166141010577 0ustar Source: mriconvert Homepage: http://lcni.uoregon.edu/~jolinda/MRIConvert/ Section: science Priority: optional Maintainer: Debian Med Packaging Team Uploaders: Steve M. Robbins Build-Depends: debhelper (>= 9), libboost-program-options-dev, libwxgtk2.8-dev, cableswig, cmake, help2man, Standards-Version: 3.9.5 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mriconvert/trunk/ Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/mriconvert/trunk/ Package: mriconvert Section: science Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} Description: medical image file conversion utility MRIConvert is a medical image file conversion utility that converts DICOM files to NIfTI 1.1, Analyze 7.5, SPM99/Analyze, BrainVoyager, and MetaImage volume formats. debian/source/0000755000000000000000000000000012261170240010461 5ustar debian/source/format0000644000000000000000000000001411726541373011705 0ustar 3.0 (quilt) debian/patches/0000755000000000000000000000000012261170240010610 5ustar debian/patches/series0000644000000000000000000000000012170175714012025 0ustar debian/changelog0000644000000000000000000001142012261165731011042 0ustar mriconvert (1:2.0.7-1) unstable; urgency=low * New upstream. -- Steve M. Robbins Wed, 01 Jan 2014 22:32:24 -0600 mriconvert (1:2.0.6-1) unstable; urgency=low * New upstream. Closes: #731298. * control: Remove unnecessary build-depends on libinsighttoolkit3-dev. Update Standards-Version to 3.9.5. * watch: Replace with version from http://anonscm.debian.org/viewvc/sepwatch -- Steve M. Robbins Sat, 07 Dec 2013 16:51:57 -0600 mriconvert (1:2.0.4-3) unstable; urgency=low * Undo previous changes. Linking with boost-exceptions was not the problem. It seems rather that the boost packages were built with an older compiler. * control: Change dependency to boost1.54. -- Steve M. Robbins Sat, 13 Jul 2013 02:08:36 -0500 mriconvert (1:2.0.4-2) unstable; urgency=low * patches/boost-exception.patch: New. Link with -lboost_program_options. The build on MIPS and ARM failed because Boost program-options needs symbols from Boost exception. * control: Add build-dependency for Boost.Exception. Unfortunately, the current boost-defaults is missing an unversioned boost-exception-dev, so added deps for Boost 1.53. -- Steve M. Robbins Tue, 09 Jul 2013 22:35:19 -0500 mriconvert (1:2.0.4-1) unstable; urgency=low * New upstream. -- Steve M. Robbins Sun, 07 Jul 2013 03:24:50 -0500 mriconvert (2.0.250-2) UNRELEASED; urgency=low * control: - multi-line build-depends to ease patching for backports - revert to build against ITK 3 instead of ITK 4 which still FTBFS on various architectures - boosted policy to 3.9.4 (no further changes seems to be due) * rules: - added --no-info to help2man call to remove statement about (absent) Texinfo documentation -- Yaroslav Halchenko Tue, 12 Feb 2013 08:56:12 -0500 mriconvert (2.0.250-1) unstable; urgency=low * New upstream. Closes: #699939. * control: Update build-depends (add libboost-program-options-dev). * patches/findwxwidgets.patch: Remove. * patches/wxwidgets-initializer.patch: Remove. * Upstream fixed source package issues; remove get-orig-source script. -- Steve M. Robbins Thu, 07 Feb 2013 21:29:55 -0600 mriconvert (2.0.235+dfsg-1) UNRELEASED; urgency=low [ Dmitry Smirnov ] * debian/watch: Enable proper detection of new upstream version [ Andreas Tille ] * debian/copyright: - DEP 5 - Add Files-Excluded to document what was removed from original source - Also exclude prebuilded binary files once we are repackaging to save a lot of disk space * There is no point in mentioning quilt explicitly since source format 3 (quilt) is used * debian/rules: Detect upstream version automatically -- Andreas Tille Tue, 28 Aug 2012 14:47:57 +0200 mriconvert (2.0.235-1) unstable; urgency=low * New upstream. -- Steve M. Robbins Fri, 09 Mar 2012 20:51:58 -0600 mriconvert (2.0.217-4) unstable; urgency=low * patches/wxwidgets-initializer.patch: New. Pass argc, argv to wxInitializer constructor (thanks, Olly Betts). Fixes segfault; see #646654. -- Steve M. Robbins Thu, 10 Nov 2011 23:06:44 -0600 mriconvert (2.0.217-3) unstable; urgency=low * rules: Search for built binary in */release. -- Steve M. Robbins Fri, 07 Oct 2011 07:32:29 -0500 mriconvert (2.0.217-2) unstable; urgency=low * rules: Support use of dpkg before 1.16.1 by using "-include" for buildflags.mk. Create mcverter man page; install together with MRIConvert manpage. * MRIConvert.1: New. * control: Update Standards-Version to 3.9.2. -- Steve M. Robbins Thu, 06 Oct 2011 21:03:57 -0500 mriconvert (2.0.217-1) unstable; urgency=low * New upstream. -- Steve M. Robbins Tue, 04 Oct 2011 19:47:11 -0500 mriconvert (2.0.216-1) unstable; urgency=low * New upstream. Closes: #631168. - Help | File formats is fixed. Closes: #617345. * rules: enable parallel builds. -- Steve M. Robbins Wed, 22 Jun 2011 23:15:12 -0500 mriconvert (2.0.203-1) unstable; urgency=low [ Mathieu Malaterre ] * Adding man page for mcverter (help2man) * Adding watch file * Adding a get-orig-source file [ Steve M. Robbins ] * New upstream. Update get-orig-source script. -- Steve M. Robbins Mon, 11 Apr 2011 22:38:03 -0500 mriconvert (2.0-2) unstable; urgency=low * copyright: Replace with correct copyright & license statements. -- Steve M. Robbins Sun, 31 Oct 2010 22:20:49 -0500 mriconvert (2.0-1) unstable; urgency=low * Initial upload. Closes: #599880. -- Steve M. Robbins Tue, 12 Oct 2010 23:40:00 -0500 debian/MRIConvert.10000644000000000000000000000056711643465176011265 0ustar .TH MRICONVERT "1" "October 2011" "MRIConvert 2.0.217" "User Commands" .SH NAME MRIConvert \- interactive MRI conversion software .SH SYNOPSIS .B MRIConvert .SH DESCRIPTION .TP Interactive utility that reads DICOM MRI files and writes into NifTI, Analyze, MetaImage, or BrainVoyager formats. .SH "SEE ALSO" MRI files can be converted using the .B mcverter command-line tool. debian/rules0000755000000000000000000000075312166222615010256 0ustar #!/usr/bin/make -f DPKG_EXPORT_BUILDFLAGS = 1 -include /usr/share/dpkg/buildflags.mk VERSION := $(shell dpkg-parsechangelog | grep Version | cut -d\ -f2 | cut -d- -f1) %: dh $@ --parallel override_dh_install: dh_install */release/mcverter */release/MRIConvert usr/bin override_dh_installman: help2man --no-info -n 'non-interactive MRI conversion software' --version-string $(VERSION) --no-discard-stderr */release/mcverter > mcverter.1 dh_installman mcverter.1 debian/MRIConvert.1