debian/0000755000000000000000000000000012222336464007172 5ustar debian/watch0000644000000000000000000000011312000042350010174 0ustar version=3 ftp://rostlab.org/norsp/norsp-([0-9.]+)\.tar\.gz debian uupdate debian/rules0000755000000000000000000000042212000042350010226 0ustar #!/usr/bin/make -f # Uncomment this to turn on verbose mode. #export DH_VERBOSE=1 .PHONY: override_dh_compress override_dh_compress: dh_compress -Xexamples/query.fasta -Xexamples/query.hssp -Xexamples/query.prof -Xexamples/query.phdHtm -Xexamples/query.coils %: dh $@ debian/changelog0000644000000000000000000000205512222336447011047 0ustar norsp (1.0.6-1) unstable; urgency=low * New upstream release (Closes: #724117): FTBFS: POD errors. -- Laszlo Kajan Mon, 30 Sep 2013 20:03:24 +0200 norsp (1.0.5-1) unstable; urgency=low * New upstream release (Closes: #684856) -- Laszlo Kajan Tue, 14 Aug 2012 18:49:50 +0200 norsp (1.0.4-1) unstable; urgency=low * Initial release (Closes: #680367) -- Eva Reisinger Fri, 13 Jul 2012 11:53:07 +0000 norsp (1.0.3) unstable; urgency=low * recommends now on ncoils (>= 2002-3) -- Laszlo Kajan Thu, 27 Oct 2011 20:22:02 +0200 norsp (1.0.2) unstable; urgency=low * warning when popcon not installed -- Laszlo Kajan Mon, 28 Feb 2011 18:02:41 +0100 norsp (1.0.1) unstable; urgency=low * popularity contest * bugzilla new url -- Laszlo Kajan Fri, 18 Feb 2011 17:09:24 +0100 norsp (1.0.0) unstable; urgency=low * Initial Release. -- Guy Yachdav Thu, 23 Dec 2010 10:21:12 +0100 debian/upstream0000644000000000000000000000076112000042350010737 0ustar Bug-Database: https://rostlab.org/bugzilla3/buglist.cgi?product=norsp Bug-Submit: https://rostlab.org/bugzilla3/enter_bug.cgi?product=norsp Reference: Author: Jinfeng Liu and Burkhard Rost Title: 'NORSp: Predictions of long regions without regular secondary structure.' Journal: Nucleic Acids Res Year: 2003 Volume: 31 Number: 13 Pages: 3833-3835 PMID: 12824431 URL: http://nar.oxfordjournals.org/content/31/13/3833.long Eprint: http://nar.oxfordjournals.org/content/31/13/3833.full.pdf debian/control0000644000000000000000000000311512222336444010573 0ustar Source: norsp Section: science Priority: extra Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Eva Reisinger Build-Depends: debhelper (>= 8) Standards-Version: 3.9.4 Homepage: https://rostlab.org/owiki/index.php/NORSp_-_predictor_of_NOn-Regular_Secondary_Structure Vcs-Browser: http://anonscm.debian.org/wsvn/debian-med/trunk/packages/norsp/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/norsp/trunk/ Package: norsp Architecture: all Depends: ${misc:Depends}, perl Recommends: blast2, librg-utils-perl, pp-popularity-contest, profphd, ncoils (>= 2002-3) Description: predictor of non-regular secondary structure NORSp is a publicly available predictor for disordered regions in proteins. Specifically, it predicts long regions with no regular secondary structure. Upon submission of a protein sequence, NORSp analyses the protein about its secondary structure, the presence of transmembrane helices and coiled-coils. It then returns the presence and position of disordered regions. . NORSp can be useful for biologists in several ways. For example, crystallographers can check whether their proteins contain NORS regions and make the decision about whether to proceed with the experiments since NORS proteins may be difficult to crystallise, as demonstrated by the their low occurrence in PDB. Biologists interested in protein structure-function relationship may also find it interesting to verify whether the protein-protein interaction sites coincide with NORS regions. debian/compat0000644000000000000000000000000212000003431010343 0ustar 8 debian/README.source0000644000000000000000000000035712000042350011334 0ustar norsp for Debian ================ Uncompressed examples --------------------- dh_compress excludes examples that appear on the man page. This is in order to allow the example to work as it is pasted on the command like from the man page. debian/copyright0000644000000000000000000000243012000042350011102 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: norsp Upstream-Contact: Guy Yachdav Source: ftp://rostlab.org/norsp/ Files: debian/* Copyright: 2010 Guy Yachdav 2012 Laszlo Kajan 2012 Eva Reisinger License: GPL-3+ Files: * Copyright: 2003 Jinfeng Liu 2003 Burkhard Rost License: GPL-3+ License: GPL-3+ This package is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. . This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this package; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA . On Debian systems, the complete text of the GNU General Public License can be found in `/usr/share/common-licenses/GPL-3'. debian/source/0000755000000000000000000000000012222336464010472 5ustar debian/source/format0000644000000000000000000000001412000003431011653 0ustar 3.0 (quilt)