debian/0000755000000000000000000000000012001253427007162 5ustar debian/upstream0000644000000000000000000000061312000210442010732 0ustar Reference: - Author: Murat Cokol and Rajesh Nair and Burkhard Rost Title: 'Finding nuclear localization signals.' Journal: EMBO reports Volume: 1 Number: 5 Pages: 411-415 Year: 2000 URL: http://www.nature.com/embor/journal/v1/n5/full/embor546.html eprint: http://www.nature.com/embor/journal/v1/n5/pdf/embor546.pdf PMID: 11258480 DOI: 10.1093/embo-reports/kvd092 debian/source/0000755000000000000000000000000012001252564010463 5ustar debian/source/format0000644000000000000000000000001412000210442011655 0ustar 3.0 (quilt) debian/README.source0000644000000000000000000000037112000210442011327 0ustar predictnls for Debian ===================== Uncompressed examples --------------------- dh_compress excludes examples that appear on the man page. This is in order to allow the example to work as it is pasted on the command like from the man page. debian/copyright0000644000000000000000000000241312000210442011102 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: predictnls Upstream-Contact: Laszlo Kajan Source: ftp://rostlab.org/predictnls/ Files: debian/* Copyright: 2010, 2012 Laszlo Kajan Technical University Munich, Germany 2012 Julia Ertl License: GPL-3+ Files: * Copyright: 2010 Rajesh Nair License: GPL-3+ License: GPL-3+ This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this package; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA . On Debian systems, the full text of the GNU General Public License version 3 can be found in the file `/usr/share/common-licenses/GPL-3'. debian/compat0000644000000000000000000000000212000210442010345 0ustar 8 debian/control0000644000000000000000000000162312000210442010554 0ustar Source: predictnls Section: science Priority: extra Maintainer: Debian Med Packaging Team Uploaders: Julia Ertl , Laszlo Kajan Build-Depends: debhelper (>= 8), autotools-dev Standards-Version: 3.9.3 Homepage: http://rostlab.org/services/predictNLS/ Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/predictnls/trunk/ Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/predictnls/trunk/ DM-Upload-Allowed: yes Package: predictnls Architecture: all Depends: ${shlibs:Depends}, ${misc:Depends}, perl Recommends: pp-popularity-contest Description: prediction and analysis of protein nuclear localization signals predictnls is a method for the prediction and analysis of protein nuclear localization signals (NLS). In addition to reporting the positions of NLSs found, predictnls also gives short statistics. debian/watch0000644000000000000000000000010412000210442010173 0ustar version=3 ftp://rostlab.org/predictnls/predictnls-([0-9.]+).tar.gz debian/changelog0000644000000000000000000000641512000210442011027 0ustar predictnls (1.0.20-1) unstable; urgency=low * initial release (Closes: #681271) -- Julia Ertl Tue, 10 Jul 2012 15:38:37 +0000 predictnls (1.0.18) unstable; urgency=low * fixed warnings for test sequences MNKIPIKDLLNPGAA and MNKIPIKDLLNPG * bug 39 (PredictNLS misses any NLS right at start of the protein) fixed * fixed bug 37, 38, 40: LICENSE file missing; PredictNLS start positions off by one (using zero based counting); predictNLS only reports last match for any one NLS motif -- Laszlo Kajan Fri, 03 Jun 2011 19:00:02 +0200 predictnls (1.0.17) unstable; urgency=low * better error reporting around line 301 -- Laszlo Kajan Sun, 17 Apr 2011 13:29:38 +0200 predictnls (1.0.16) unstable; urgency=low * bugzilla url * popularity contest -- Laszlo Kajan Fri, 18 Feb 2011 17:57:00 +0100 predictnls (1.0.15) stable; urgency=low * Changed references to online help -- Guy Yachdav Thu, 04 Nov 2010 20:33:24 +0100 predictnls (1.0.14) stable; urgency=low * fixed perl warning -- Laszlo Kajan Wed, 13 Oct 2010 13:09:22 +0200 predictnls (1.0.13) stable; urgency=low * fixed deletion of output file bug -- Laszlo Kajan Wed, 13 Oct 2010 13:05:47 +0200 predictnls (1.0.12) stable; urgency=low * added nlsdat option to extract non-html nls prediction along with the html * fixed html report table -- Laszlo Kajan Wed, 13 Oct 2010 12:35:26 +0200 predictnls (1.0.11) stable; urgency=low * Fixed temporary dir missing '/' bug -- Laszlo Kajan Sat, 25 Sep 2010 23:04:53 +0200 predictnls (1.0.10) * Fixed make file -- Laszlo Kajan Wed, 18 Aug 2010 12:18:07 +0200 predictnls (1.0.9) * Implemented check for one-sequence fasta input - as expected by program -- Laszlo Kajan Wed, 18 Aug 2010 12:06:23 +0200 predictnls (1.0.8) * New README - now with content * New options: --version, --help, uses Pod::Usage -- Laszlo Kajan Wed, 18 Aug 2010 11:51:16 +0200 predictnls (1.0.7) * New data files from Rajesh's predictNLS-v1.3.tgz: ExptNls.rdb is better formatted an extended, My_NLS_list is extended -- Laszlo Kajan Mon, 16 Aug 2010 18:06:04 +0200 predictnls (1.0.6) * Summary file param now takes path, so does trace -- Laszlo Kajan Thu, 22 Jul 2010 23:10:11 +0200 predictnls (1.0.5) * Summary file correctly documented and operates -- Laszlo Kajan Thu, 22 Jul 2010 23:10:11 +0200 predictnls (1.0.4) * html option now defaults to 0 -- Laszlo Kajan Wed, 23 Jun 2010 17:13:00 +0200 predictnls (1.0.3) * New license: GPL now. -- Laszlo Kajan Tue, 09 Mar 2010 11:23:17 +0100 predictnls (1.0.2) * example in html format * fixed unint var warnings -- Laszlo Kajan Mon, 08 Mar 2010 14:37:57 +0100 predictnls (1.0.1) * upgrade to version from loctree -- Laszlo Kajan Sun, 28 Feb 2010 23:46:29 +0100 predictnls (1.0.0) * Initial packaged version -- Laszlo Kajan Thu, 18 Feb 2010 15:11:38 +0100 debian/rules0000755000000000000000000000026312000210442010230 0ustar #!/usr/bin/make -f # Uncomment this to turn on verbose mode. #export DH_VERBOSE=1 .PHONY: override_dh_compress override_dh_compress: dh_compress -Xexamples/O49931.fa %: dh $@