debian/0000755000000000000000000000000012034600436007164 5ustar debian/watch0000644000000000000000000000013012030020041010167 0ustar version=3 opts=pasv ftp://rostlab.org/proftmb/proftmb-([0-9.]+)\.tar\.gz debian uupdate debian/rules0000755000000000000000000000074612021414064010247 0ustar #!/usr/bin/make -f # Uncomment this to turn on verbose mode. #export DH_VERBOSE=1 export CPPFLAGS:=$(shell dpkg-buildflags --get CPPFLAGS) export CFLAGS:=$(shell dpkg-buildflags --get CFLAGS) export CXXFLAGS:=$(shell dpkg-buildflags --get CXXFLAGS) export LDFLAGS:=$(shell dpkg-buildflags --get LDFLAGS) %: dh $@ --parallel .PHONY: override_dh_compress override_dh_compress: dh_compress -Xexample.Q .PHONY: override_dh_strip override_dh_strip: dh_strip --dbg-package=proftmb-dbg debian/proftmb.install0000644000000000000000000000000412021414064012213 0ustar usr debian/changelog0000644000000000000000000000134112034600273011034 0ustar proftmb (1.1.12-1) unstable; urgency=low * New upstream release. -- Laszlo Kajan Thu, 20 Sep 2012 17:54:30 +0200 proftmb (1.1.11-1) unstable; urgency=low * Added debug package. * New upstream release. -- Laszlo Kajan Tue, 04 Sep 2012 15:45:32 +0200 proftmb (1.1.10-1) unstable; urgency=low * New upstream release -- Laszlo Kajan Mon, 20 Feb 2012 17:27:43 +0100 proftmb (1.1.9-1) unstable; urgency=low * New upstream release -- Laszlo Kajan Fri, 17 Feb 2012 11:43:50 +0100 proftmb (1.1.8-1) unstable; urgency=low * Initial release (Closes: #659964) -- Laszlo Kajan Wed, 15 Feb 2012 12:46:59 +0100 debian/upstream0000644000000000000000000000061211716730316010755 0ustar Name: proftmb Contact: Henry Bigelow Homepage: http://rostlab.org/ Reference: - Author: Bigelow, H. and Rost, B. Title: 'PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins.' Journal: Nucleic Acids Res Volume: 34(Web Server issue) Pages: W186-8 year: 2006 URL: http://www.ncbi.nlm.nih.gov/pubmed/16844988 PMID: 16844988 debian/control0000644000000000000000000000250212021414064010562 0ustar Source: proftmb Section: science Priority: extra Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan DM-Upload-Allowed: yes Build-Depends: debhelper (>= 8.0.0), autotools-dev, help2man, libgsl0-dev, opt Standards-Version: 3.9.3 Homepage: http://rostlab.org/ Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/rostlab/proftmb/trunk/ Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/rostlab/proftmb/trunk/ Package: proftmb Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} Recommends: pp-popularity-contest Description: per-residue prediction of bacterial transmembrane beta barrels proftmb predicts transmembrane beta-barrel (TMB) proteins in Gram-negative bacteria. . For each query protein, proftmb provides both a Z-value indicating that the protein actually contains a membrane barrel, and a four-state per-residue labeling of upward- and downward-facing strands, periplasmic hairpins and extracellular loops. Package: proftmb-dbg Architecture: any Section: debug Depends: proftmb (= ${binary:Version}), ${misc:Depends} Enhances: proftmb Description: debugging symbols for proftmb proftmb predicts transmembrane beta-barrel (TMB) proteins in Gram-negative bacteria. . This package contains the detached debug symbols. debian/compat0000644000000000000000000000000211716730316010371 0ustar 8 debian/copyright0000644000000000000000000000225512021414064011117 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: proftmb Source: ftp://rostlab.org/proftmb/proftmb-([0-9.]+)\.tar\.gz Files: debian/* Copyright: 2012 Laszlo Kajan , Technical University of Munich, Germany License: GPL-3.0+ Files: * Copyright: 2004 Henry Bigelow , Columbia University in the City of New York, USA License: GPL-3.0+ License: GPL-3.0+ This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. . This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see . . On Debian systems, the complete text of the GNU General Public License version 3 can be found in "/usr/share/common-licenses/GPL-3". debian/source/0000755000000000000000000000000012034600436010464 5ustar debian/source/format0000644000000000000000000000001411716730316011701 0ustar 3.0 (quilt)