debian/0000775000000000000000000000000012042645637007201 5ustar debian/watch0000664000000000000000000000014211770343023010216 0ustar # Compulsory line, this is a version 3 file version=3 http://sf.net/psignifit3/psignifit(.*)\.zip debian/rules0000775000000000000000000000147311770357670010272 0ustar #!/usr/bin/make -f # -*- makefile -*- # This has to be exported to make some magic below work. export DH_OPTIONS # set the MPLCONFIGDIR to avoid writing into non writable location export HOME=$(CURDIR)/build export MPLCONFIGDIR=$(CURDIR)/build %: dh $@ --buildsystem=python_distutils # Assure Agg backend for matplotlib to avoid any possible complication override_dh_auto_configure: mkdir -p $(MPLCONFIGDIR) echo "backend : Agg" >| $(MPLCONFIGDIR)/matplotlibrc dh_auto_configure override_dh_auto_test: ${MAKE} test dh_auto_test override_dh_auto_build: $(MAKE) -C src libpsipp.so # Inject debian version into binary package echo "version = \"$$(dpkg-parsechangelog | grep Version | cut -f2 -d' ')\"">> pypsignifit/__version__.py $(MAKE) swig dh_auto_build override_dh_auto_clean: dh_auto_clean $(MAKE) clean debian/python-pypsignifit.examples0000664000000000000000000000001611770343023014611 0ustar examples/*.py debian/changelog0000664000000000000000000000255412042645637011061 0ustar psignifit3 (3.0~beta.20120611.1-1build1) raring; urgency=low * No-change rebuild to fix libc6 dependencies on powerpc. -- Adam Conrad Sat, 27 Oct 2012 03:48:41 +0100 psignifit3 (3.0~beta.20120611.1-1) unstable; urgency=low * Remove 'test_precision' patch, fixed upstream * New upstream release * Fix for unwritable home directories (Closes: #674969) -- Nikolaus Valentin Hänel Wed, 20 Jun 2012 15:24:50 +0200 psignifit3 (3.0~beta.20120503.1-1) unstable; urgency=low * Bumped standards version from 3.9.2 to 3.9.3, no changes required * Bumped the copyright year. * Add python-tk as dependency, ndtools showed that test fail without it * Add a patch to fix test precision on i386 in patches/test_precision * Inject debian version number into python module * Fix unversioned copyright format uri * This is a combined bugfix and feature release from upstream * Rename source package to psignifit3. This is what it was called in the ITP and it allows us to maintain the 'old' psignifit source and binary package. * Initial release (Closes: #580499) -- Nikolaus Valentin Hänel Sun, 27 May 2012 17:48:14 +0200 psignifit (3.0~beta.20111109.1-1) neurodebian; urgency=low * Neurodebian testing release -- Michael Hanke Wed, 09 Nov 2011 14:19:32 +0100 debian/python-psignifit.docs0000664000000000000000000000000711770343023013352 0ustar README debian/gbp.conf0000664000000000000000000000017511770343023010612 0ustar [DEFAULT] upstream-branch = master debian-branch = debian upstream-tag = release/%(version)s debian-tag = debian/%(version)s debian/python-pypsignifit.install0000664000000000000000000000004111770343023014437 0ustar src/build/*.so usr/lib/psignifit debian/copyright0000664000000000000000000000647611770343023011140 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: psignifit3 Source: http://psignifit.sf.net Files: * Copyright: 2010-2012 Ingo Fründ 2010-2012 Valentin Haenel License: Expat Files: debian/* Copyright: 2011-2012 Valentin Haenel 2011-2012 Michael Hanke License: Expat Files: doc-src/extapi.py Copyright: 2009, Artur Wroblewski License: GPL-3+ On Debian systems, the complete text of the GNU General Public License can be found in `/usr/share/common-licenses/GPL-3'. Files: src/rng.cc rpsignifit/src/rng.cc Copyright: 1997-2002, Makoto Matsumoto and Takuji Nishimura License: BSD-3-clause Files: doc-src/psignifit_logo.eps Copyright: Copyright (C) 2010 Artifex Software, Inc. License: Expat License: Expat Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: . The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. . THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. License: BSD-3-Clause Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. Neither the name of the University nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. . THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. debian/compat0000664000000000000000000000000211770343023010366 0ustar 7 debian/source/0000775000000000000000000000000011770343023010470 5ustar debian/source/format0000664000000000000000000000001411770343023011676 0ustar 3.0 (quilt) debian/control0000664000000000000000000000244411770343023010577 0ustar Source: psignifit3 Section: science Priority: extra Maintainer: Nikolaus Valentin Hänel Uploaders: Michael Hanke Build-Depends: debhelper (>= 7.0.50~), python-all-dev, swig (>= 1.3.40~), python-support (>= 0.6), python-nose, python-numpy, python-matplotlib, python-scipy, python-tk Standards-Version: 3.9.3 Homepage: http://psignifit.sourceforge.net Vcs-Git: git://psignifit.git.sf.net/gitroot/psignifit/psignifit Vcs-Browser: http://psignifit.git.sf.net/git/gitweb-index.cgi Package: python-pypsignifit Section: python Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, python-numpy, python-matplotlib, python-scipy Description: psychometric analysis of psychophysics data in Python Psignifit allows fitting of psychometric functions to datasets while maintaining full control over a large number of parameters. Psignifit performs the calculation of confidence intervals as well as goodness-of-fit tests. In addition it offers: . * full Bayesian treatment of psychometric functions including Bayesian model selection and goodness of fit assessment * identification of influential observations and outlier detection * flexible shape definition of the psychometric function . This package provides the Python bindings. debian/patches/0000775000000000000000000000000011770343767010636 5ustar debian/patches/rpath_config0000664000000000000000000000036511770343023013211 0ustar From: Michael Hanke Subject: Set RPATH for Python extension The extensions use a private shared library installed into /usr/lib/psignifit. --- /dev/null +++ b/setup.cfg @@ -0,0 +1,2 @@ +[build_ext] +rpath = /usr/lib/psignifit debian/patches/series0000664000000000000000000000001511770343760012040 0ustar rpath_config