pyNFFT-1.3.2/0000755000175000017500000000000012366200152014634 5ustar gv10-debiangv10-debian00000000000000pyNFFT-1.3.2/pyNFFT.egg-info/0000755000175000017500000000000012366200152017434 5ustar gv10-debiangv10-debian00000000000000pyNFFT-1.3.2/pyNFFT.egg-info/dependency_links.txt0000644000175000017500000000000112366200134023502 0ustar gv10-debiangv10-debian00000000000000 pyNFFT-1.3.2/pyNFFT.egg-info/PKG-INFO0000644000175000017500000000370412366200134020535 0ustar gv10-debiangv10-debian00000000000000Metadata-Version: 1.1 Name: pyNFFT Version: 1.3.2 Summary: A pythonic wrapper around NFFT Home-page: https://github.com/ghisvail/pyNFFT.git Author: Ghislain Vaillant Author-email: ghisvail@gmail.com License: UNKNOWN Description: "The NFFT is a C subroutine library for computing the nonequispaced discrete Fourier transform (NDFT) in one or more dimensions, of arbitrary input size, and of complex data." The NFFT library is licensed under GPLv2 and available at: http://www-user.tu-chemnitz.de/~potts/nfft/index.php This wrapper provides a somewhat Pythonic access to some of the core NFFT library functionalities and is largely inspired from the pyFFTW project developped by Henry Gomersall (http://hgomersall.github.io/pyFFTW/). This project is still work in progress and is still considered beta quality. In particular, the API is not yet frozen and is likely to change as the development continues. Please consult the documentation and changelog for more information. Platform: Linux Platform: Unix Classifier: Programming Language :: Cython Classifier: Programming Language :: Python Classifier: Programming Language :: Python :: 2 Classifier: Programming Language :: Python :: 2.6 Classifier: Programming Language :: Python :: 2.7 Classifier: Programming Language :: Python :: 3 Classifier: Programming Language :: Python :: 3.2 Classifier: Programming Language :: Python :: 3.3 Classifier: Programming Language :: Python :: 3.4 Classifier: Development Status :: 4 - Beta Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+) Classifier: Operating System :: POSIX :: Linux Classifier: Intended Audience :: Developers Classifier: Intended Audience :: Science/Research Classifier: Topic :: Scientific/Engineering Classifier: Topic :: Scientific/Engineering :: Mathematics Classifier: Topic :: Multimedia :: Sound/Audio :: Analysis pyNFFT-1.3.2/pyNFFT.egg-info/top_level.txt0000644000175000017500000000000712366200134022163 0ustar gv10-debiangv10-debian00000000000000pynfft pyNFFT-1.3.2/pyNFFT.egg-info/SOURCES.txt0000644000175000017500000000137212366200134021323 0ustar gv10-debiangv10-debian00000000000000CHANGELOG.txt COPYING.txt MANIFEST.in README.rst setup.cfg setup.py /home/gv10-debian/Workspace/pyNFFT/pynfft/nfft.c /home/gv10-debian/Workspace/pyNFFT/pynfft/solver.c /home/gv10-debian/Workspace/pyNFFT/pynfft/util.c doc/Makefile doc/source/api.rst doc/source/conf.py doc/source/index.rst doc/source/tutorial.rst doc/source/api/nfft.rst doc/source/api/solver.rst doc/source/api/util.rst pyNFFT.egg-info/PKG-INFO pyNFFT.egg-info/SOURCES.txt pyNFFT.egg-info/dependency_links.txt pyNFFT.egg-info/top_level.txt pynfft/__init__.py pynfft/cnfft3.pxd pynfft/cnfft3util.pxd pynfft/nfft.c pynfft/nfft.pxd pynfft/nfft.pyx pynfft/solver.c pynfft/solver.pxd pynfft/solver.pyx pynfft/util.c pynfft/util.pyx pynfft/version.py pynfft/tests/__init__.py pynfft/tests/test_nfft.pypyNFFT-1.3.2/pynfft/0000755000175000017500000000000012366200152016142 5ustar gv10-debiangv10-debian00000000000000pyNFFT-1.3.2/pynfft/tests/0000755000175000017500000000000012366200152017304 5ustar gv10-debiangv10-debian00000000000000pyNFFT-1.3.2/pynfft/tests/__init__.py0000644000175000017500000000000012366173712021416 0ustar gv10-debiangv10-debian00000000000000pyNFFT-1.3.2/pynfft/tests/test_nfft.py0000644000175000017500000000644412366173712021675 0ustar gv10-debiangv10-debian00000000000000# -*- coding: utf-8 -*- # # Copyright (C) 2013 Ghislain Vaillant # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program. If not, see . from __future__ import division import numpy from numpy import pi from numpy.testing import assert_allclose from pynfft.nfft import NFFT from pynfft.util import vrand_unit_complex, vrand_shifted_unit_double def fdft(x, f_hat): N = f_hat.shape d = x.shape[-1] k = numpy.mgrid[[slice(-Nt/2, Nt/2) for Nt in N]] k = k.reshape([d, -1]) x = x.reshape([-1, d]) F = numpy.exp(-2j * pi * numpy.dot(x, k)) f_dft = numpy.dot(F, f_hat.ravel()) return f_dft def rdft(x, f, N): d = x.shape[-1] k = numpy.mgrid[[slice(-Nt/2, Nt/2) for Nt in N]] k = k.reshape([d, -1]) x = x.reshape([-1, d]) F = numpy.exp(-2j * pi * numpy.dot(x, k)) f_hat_dft = numpy.dot(numpy.conjugate(F).T, f) f_hat = f_hat_dft.reshape(N) return f_hat def check_forward_nfft(plan): vrand_unit_complex(plan.f_hat.ravel()) assert_allclose(plan.trafo(), fdft(plan.x, plan.f_hat)) def check_forward_ndft(plan): vrand_unit_complex(plan.f_hat.ravel()) assert_allclose(plan.trafo(use_dft=True), fdft(plan.x, plan.f_hat)) def check_adjoint_nfft(plan): vrand_unit_complex(plan.f.ravel()) assert_allclose(plan.adjoint(), rdft(plan.x, plan.f, plan.N)) def check_adjoint_ndft(plan): vrand_unit_complex(plan.f.ravel()) assert_allclose(plan.adjoint(use_dft=True), rdft(plan.x, plan.f, plan.N)) tested_nfft_args = ( (8, 8, dict(m=6)), (16, 16, dict()), (24, 24, dict()), (32, 32, dict()), (64, 64, dict()), ((8, 8), 8*8, dict(m=6)), ((16, 16), 16*16, dict()), ((24, 24), 24*24, dict()), ((32, 32), 32*32, dict()), ((64, 64), 64*64, dict()), ((8, 8, 8), 8*8*8, dict(m=6)), ((16, 16, 8), 8*8*8, dict(m=6)), ((16, 16, 16), 16*16*16, dict()), ) def test_forward_nfft(): for N, M, nfft_kwargs in tested_nfft_args: plan = NFFT(N, M, **nfft_kwargs) vrand_shifted_unit_double(plan.x.ravel()) plan.precompute() yield check_forward_nfft, plan def test_forward_ndft(): for N, M, nfft_kwargs in tested_nfft_args: plan = NFFT(N, M, **nfft_kwargs) vrand_shifted_unit_double(plan.x.ravel()) plan.precompute() yield check_forward_ndft, plan def test_adjoint_nfft(): for N, M, nfft_kwargs in tested_nfft_args: plan = NFFT(N, M, **nfft_kwargs) vrand_shifted_unit_double(plan.x.ravel()) plan.precompute() yield check_adjoint_nfft, plan def test_adjoint_ndft(): for N, M, nfft_kwargs in tested_nfft_args: plan = NFFT(N, M, **nfft_kwargs) vrand_shifted_unit_double(plan.x.ravel()) plan.precompute() yield check_adjoint_ndft, plan pyNFFT-1.3.2/pynfft/__init__.py0000644000175000017500000000150312366173712020265 0ustar gv10-debiangv10-debian00000000000000#!/usr/bin/env python # -*- coding: utf-8 -*- # # Copyright (C) 2013 Ghislain Vaillant # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program. If not, see . from pynfft.version import version as __version__ from pynfft.nfft import NFFT from pynfft.solver import Solver pyNFFT-1.3.2/pynfft/cnfft3.pxd0000644000175000017500000001204112341611030020032 0ustar gv10-debiangv10-debian00000000000000# -*- coding: utf-8 -*- # # Copyright (C) 2013 Ghislain Vaillant # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program. If not, see . cdef extern from "nfft3.h": # precomputation flags for the NFFT component ctypedef enum: PRE_PHI_HUT #(1U<< 0) FG_PSI #(1U<< 1) PRE_LIN_PSI #(1U<< 2) PRE_FG_PSI #(1U<< 3) PRE_PSI #(1U<< 4) PRE_FULL_PSI #(1U<< 5) MALLOC_X #(1U<< 6) MALLOC_F_HAT #(1U<< 7) MALLOC_F #(1U<< 8) FFT_OUT_OF_PLACE #(1U<< 9) FFTW_INIT #(1U<< 10) NFFT_SORT_NODES #(1U<< 11) NFFT_OMP_BLOCKWISE_ADJOINT #(1U<<12) PRE_ONE_PSI #(PRE_LIN_PSI| PRE_FG_PSI| PRE_PSI| PRE_FULL_PSI) # precomputation flags for the FFTW component ctypedef enum: FFTW_ESTIMATE FFTW_DESTROY_INPUT # double precision complex type ctypedef double fftw_complex[2] # double precision NFFT plan ctypedef struct nfft_plan: fftw_complex *f_hat # Vector of Fourier coefficients, size is N_total float_types. fftw_complex *f # Vector of samples, size is M_total float types. double *x # Nodes in time/spatial domain, size is $dM$ doubles. void nfft_trafo_direct (nfft_plan *ths) nogil # Computes a NDFT. void nfft_adjoint_direct (nfft_plan *ths) nogil # Computes an adjoint NDFT. void nfft_trafo (nfft_plan *ths) nogil # Computes a NFFT, see the definition. void nfft_adjoint (nfft_plan *ths) nogil # Computes an adjoint NFFT, see the definition. void nfft_init_guru (nfft_plan *ths, int d, int *N, int M, int *n, int m, unsigned nfft_flags, unsigned fftw_flags) # Initialisation of a transform plan, guru. void nfft_precompute_one_psi (nfft_plan *ths) nogil # Precomputation for a transform plan. void nfft_finalize (nfft_plan *ths) # Destroys a transform plan. ctypedef enum: # precomputation flags for solver LANDWEBER #(1U<< 0) STEEPEST_DESCENT #(1U<< 1) CGNR #(1U<< 2) CGNE #(1U<< 3) NORMS_FOR_LANDWEBER #(1U<< 4) PRECOMPUTE_WEIGHT #(1U<< 5) PRECOMPUTE_DAMP #(1U<< 6) # stripped down alias of a NFFT plan used by solver ctypedef struct nfft_mv_plan_complex: pass # complex solver plan ctypedef struct solver_plan_complex: nfft_mv_plan_complex *mv # matrix vector multiplication. unsigned flags # iteration type double *w # weighting factors double *w_hat # damping factors fftw_complex *y # right hand side, samples fftw_complex *f_hat_iter # iterative solution fftw_complex *r_iter # iterated residual vector fftw_complex *z_hat_iter # residual of normal equation of \ first kind fftw_complex *p_hat_iter # search direction. fftw_complex *v_iter # residual vector update double alpha_iter # step size for search direction double beta_iter # step size for search correction double dot_r_iter # weighted dotproduct of r_iter double dot_r_iter_old # previous dot_r_iter double dot_z_hat_iter # weighted dotproduct of \ z_hat_iter double dot_z_hat_iter_old # previous dot_z_hat_iter double dot_p_hat_iter # weighted dotproduct of \ p_hat_iter double dot_v_iter # weighted dotproduct of v_iter void solver_init_advanced_complex(solver_plan_complex *ths, nfft_mv_plan_complex *mv, unsigned flags) # Advanced initialisation. void solver_before_loop_complex(solver_plan_complex *ths) nogil # Setting up residuals before the actual iteration. void solver_loop_one_step_complex(solver_plan_complex *ths) nogil # Doing one step in the iteration. void solver_finalize_complex(solver_plan_complex *ths) # Destroys the plan for the inverse transform. cdef extern from "fftw3.h": void fftw_cleanup() # cleanup routines void fftw_init_threads() # threading routines void fftw_cleanup_threads() # cleanup routines pyNFFT-1.3.2/pynfft/util.c0000644000175000017500000102315712366171247017310 0ustar gv10-debiangv10-debian00000000000000/* Generated by Cython 0.20.1post0 (Debian 0.20.1+git90-g0e6e38e-1+b1) on Wed Jul 30 14:27:02 2014 */ #define PY_SSIZE_T_CLEAN #ifndef CYTHON_USE_PYLONG_INTERNALS #ifdef PYLONG_BITS_IN_DIGIT #define CYTHON_USE_PYLONG_INTERNALS 0 #else #include "pyconfig.h" #ifdef PYLONG_BITS_IN_DIGIT #define CYTHON_USE_PYLONG_INTERNALS 1 #else #define CYTHON_USE_PYLONG_INTERNALS 0 #endif #endif #endif #include "Python.h" #ifndef Py_PYTHON_H #error Python headers needed to compile C extensions, please install development version of Python. #elif PY_VERSION_HEX < 0x02040000 #error Cython requires Python 2.4+. #else #define CYTHON_ABI "0_20_1post0" #include /* For offsetof */ #ifndef offsetof #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) #endif #if !defined(WIN32) && !defined(MS_WINDOWS) #ifndef __stdcall #define __stdcall #endif #ifndef __cdecl #define __cdecl #endif #ifndef __fastcall #define __fastcall #endif #endif #ifndef DL_IMPORT #define DL_IMPORT(t) t #endif #ifndef DL_EXPORT #define DL_EXPORT(t) t #endif #ifndef PY_LONG_LONG #define PY_LONG_LONG LONG_LONG #endif #ifndef Py_HUGE_VAL #define Py_HUGE_VAL HUGE_VAL #endif #ifdef PYPY_VERSION #define CYTHON_COMPILING_IN_PYPY 1 #define CYTHON_COMPILING_IN_CPYTHON 0 #else #define CYTHON_COMPILING_IN_PYPY 0 #define CYTHON_COMPILING_IN_CPYTHON 1 #endif #if CYTHON_COMPILING_IN_PYPY #define Py_OptimizeFlag 0 #endif #if PY_VERSION_HEX < 0x02050000 typedef int Py_ssize_t; 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PyMethod_New(func, self) : PyInstanceMethod_New(func)) #endif #if PY_VERSION_HEX < 0x02050000 #define __Pyx_GetAttrString(o,n) PyObject_GetAttrString((o),((char *)(n))) #define __Pyx_SetAttrString(o,n,a) PyObject_SetAttrString((o),((char *)(n)),(a)) #define __Pyx_DelAttrString(o,n) PyObject_DelAttrString((o),((char *)(n))) #else #define __Pyx_GetAttrString(o,n) PyObject_GetAttrString((o),(n)) #define __Pyx_SetAttrString(o,n,a) PyObject_SetAttrString((o),(n),(a)) #define __Pyx_DelAttrString(o,n) PyObject_DelAttrString((o),(n)) #endif #if PY_VERSION_HEX < 0x02050000 #define __Pyx_NAMESTR(n) ((char *)(n)) #define __Pyx_DOCSTR(n) ((char *)(n)) #else #define __Pyx_NAMESTR(n) (n) #define __Pyx_DOCSTR(n) (n) #endif #ifndef CYTHON_INLINE #if defined(__GNUC__) #define CYTHON_INLINE __inline__ #elif defined(_MSC_VER) #define CYTHON_INLINE __inline #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L #define CYTHON_INLINE inline #else #define CYTHON_INLINE #endif #endif #ifndef CYTHON_RESTRICT #if defined(__GNUC__) #define CYTHON_RESTRICT __restrict__ #elif defined(_MSC_VER) && _MSC_VER >= 1400 #define CYTHON_RESTRICT __restrict #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L #define CYTHON_RESTRICT restrict #else #define CYTHON_RESTRICT #endif #endif #ifdef NAN #define __PYX_NAN() ((float) NAN) #else static CYTHON_INLINE float __PYX_NAN() { /* Initialize NaN. The sign is irrelevant, an exponent with all bits 1 and a nonzero mantissa means NaN. If the first bit in the mantissa is 1, it is a quiet NaN. */ float value; memset(&value, 0xFF, sizeof(value)); return value; } #endif #ifdef __cplusplus template void __Pyx_call_destructor(T* x) { x->~T(); } #endif #if PY_MAJOR_VERSION >= 3 #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) #else #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y) #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y) #endif #ifndef __PYX_EXTERN_C #ifdef __cplusplus #define __PYX_EXTERN_C extern "C" #else #define __PYX_EXTERN_C extern #endif #endif #if defined(WIN32) || defined(MS_WINDOWS) #define _USE_MATH_DEFINES #endif #include #define __PYX_HAVE__pynfft__util #define __PYX_HAVE_API__pynfft__util #include "string.h" #include "stdio.h" #include "stdlib.h" #include "numpy/arrayobject.h" #include "numpy/ufuncobject.h" #include "nfft3.h" #include "fftw3.h" #include "nfft3util.h" #ifdef _OPENMP #include #endif /* _OPENMP */ #ifdef PYREX_WITHOUT_ASSERTIONS #define CYTHON_WITHOUT_ASSERTIONS #endif #ifndef CYTHON_UNUSED # if defined(__GNUC__) # if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) # define CYTHON_UNUSED __attribute__ ((__unused__)) # else # define CYTHON_UNUSED # endif # elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) # define CYTHON_UNUSED __attribute__ ((__unused__)) # else # define CYTHON_UNUSED # endif #endif typedef struct {PyObject **p; char *s; const Py_ssize_t n; const char* encoding; const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; /*proto*/ #define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0 #define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT 0 #define __PYX_DEFAULT_STRING_ENCODING "" #define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString #define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize #define __Pyx_fits_Py_ssize_t(v, type, is_signed) ( \ (sizeof(type) < sizeof(Py_ssize_t)) || \ (sizeof(type) > sizeof(Py_ssize_t) && \ likely(v < (type)PY_SSIZE_T_MAX || \ v == (type)PY_SSIZE_T_MAX) && \ (!is_signed || likely(v > (type)PY_SSIZE_T_MIN || \ v == (type)PY_SSIZE_T_MIN))) || \ (sizeof(type) == sizeof(Py_ssize_t) && \ (is_signed || likely(v < (type)PY_SSIZE_T_MAX || \ v == (type)PY_SSIZE_T_MAX))) ) static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject*); static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); #define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s)) #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) #define __Pyx_PyBytes_FromString PyBytes_FromString #define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); #if PY_MAJOR_VERSION < 3 #define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize #else #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize #endif #define __Pyx_PyObject_AsSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_AsUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_FromUString(s) __Pyx_PyObject_FromString((const char*)s) #define __Pyx_PyBytes_FromUString(s) __Pyx_PyBytes_FromString((const char*)s) #define __Pyx_PyByteArray_FromUString(s) __Pyx_PyByteArray_FromString((const char*)s) #define __Pyx_PyStr_FromUString(s) __Pyx_PyStr_FromString((const char*)s) #define __Pyx_PyUnicode_FromUString(s) __Pyx_PyUnicode_FromString((const char*)s) #if PY_MAJOR_VERSION < 3 static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) { const Py_UNICODE *u_end = u; while (*u_end++) ; return u_end - u - 1; } #else #define __Pyx_Py_UNICODE_strlen Py_UNICODE_strlen #endif #define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u)) #define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode #define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode #define __Pyx_Owned_Py_None(b) (Py_INCREF(Py_None), Py_None) #define __Pyx_PyBool_FromLong(b) ((b) ? (Py_INCREF(Py_True), Py_True) : (Py_INCREF(Py_False), Py_False)) static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*); static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x); static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*); static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t); #if CYTHON_COMPILING_IN_CPYTHON #define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x)) #else #define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x) #endif #define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x)) #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII static int __Pyx_sys_getdefaultencoding_not_ascii; static int __Pyx_init_sys_getdefaultencoding_params(void) { PyObject* sys = NULL; PyObject* default_encoding = NULL; PyObject* ascii_chars_u = NULL; PyObject* ascii_chars_b = NULL; sys = PyImport_ImportModule("sys"); if (sys == NULL) goto bad; default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); if (default_encoding == NULL) goto bad; if (strcmp(PyBytes_AsString(default_encoding), "ascii") == 0) { __Pyx_sys_getdefaultencoding_not_ascii = 0; } else { const char* default_encoding_c = PyBytes_AS_STRING(default_encoding); char ascii_chars[128]; int c; for (c = 0; c < 128; c++) { ascii_chars[c] = c; } __Pyx_sys_getdefaultencoding_not_ascii = 1; ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL); if (ascii_chars_u == NULL) goto bad; ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL); if (ascii_chars_b == NULL || strncmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) { PyErr_Format( PyExc_ValueError, "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.", default_encoding_c); goto bad; } } Py_XDECREF(sys); Py_XDECREF(default_encoding); Py_XDECREF(ascii_chars_u); Py_XDECREF(ascii_chars_b); return 0; bad: Py_XDECREF(sys); Py_XDECREF(default_encoding); Py_XDECREF(ascii_chars_u); Py_XDECREF(ascii_chars_b); return -1; } #endif #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3 #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL) #else #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL) #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT static char* __PYX_DEFAULT_STRING_ENCODING; static int __Pyx_init_sys_getdefaultencoding_params(void) { PyObject* sys = NULL; PyObject* default_encoding = NULL; char* default_encoding_c; sys = PyImport_ImportModule("sys"); if (sys == NULL) goto bad; default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); if (default_encoding == NULL) goto bad; default_encoding_c = PyBytes_AS_STRING(default_encoding); __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c)); strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c); Py_DECREF(sys); Py_DECREF(default_encoding); return 0; bad: Py_XDECREF(sys); Py_XDECREF(default_encoding); return -1; } #endif #endif /* Test for GCC > 2.95 */ #if defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95))) #define likely(x) __builtin_expect(!!(x), 1) #define unlikely(x) __builtin_expect(!!(x), 0) #else /* !__GNUC__ or GCC < 2.95 */ #define likely(x) (x) #define unlikely(x) (x) #endif /* __GNUC__ */ static PyObject *__pyx_m; static PyObject *__pyx_d; static PyObject *__pyx_b; static PyObject *__pyx_empty_tuple; static PyObject *__pyx_empty_bytes; static int __pyx_lineno; static int __pyx_clineno = 0; static const char * __pyx_cfilenm= __FILE__; static const char *__pyx_filename; #if !defined(CYTHON_CCOMPLEX) #if defined(__cplusplus) #define CYTHON_CCOMPLEX 1 #elif defined(_Complex_I) #define CYTHON_CCOMPLEX 1 #else #define CYTHON_CCOMPLEX 0 #endif #endif #if CYTHON_CCOMPLEX #ifdef __cplusplus #include #else #include #endif #endif #if CYTHON_CCOMPLEX && !defined(__cplusplus) && defined(__sun__) && defined(__GNUC__) #undef _Complex_I #define _Complex_I 1.0fj #endif static const char *__pyx_f[] = { "util.pyx", "__init__.pxd", "type.pxd", }; #define IS_UNSIGNED(type) (((type) -1) > 0) struct __Pyx_StructField_; #define __PYX_BUF_FLAGS_PACKED_STRUCT (1 << 0) typedef struct { const char* name; /* for error messages only */ struct __Pyx_StructField_* fields; size_t size; /* sizeof(type) */ size_t arraysize[8]; /* length of array in each dimension */ int ndim; char typegroup; /* _R_eal, _C_omplex, Signed _I_nt, _U_nsigned int, _S_truct, _P_ointer, _O_bject, c_H_ar */ char is_unsigned; int flags; } __Pyx_TypeInfo; typedef struct __Pyx_StructField_ { __Pyx_TypeInfo* type; const char* name; size_t offset; } __Pyx_StructField; typedef struct { __Pyx_StructField* field; size_t parent_offset; } __Pyx_BufFmt_StackElem; typedef struct { __Pyx_StructField root; __Pyx_BufFmt_StackElem* head; size_t fmt_offset; size_t new_count, enc_count; size_t struct_alignment; int is_complex; char enc_type; char new_packmode; char enc_packmode; char is_valid_array; } __Pyx_BufFmt_Context; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":723 * # in Cython to enable them only on the right systems. * * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<< * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t */ typedef npy_int8 __pyx_t_5numpy_int8_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":724 * * ctypedef npy_int8 int8_t * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<< * ctypedef npy_int32 int32_t * ctypedef npy_int64 int64_t */ typedef npy_int16 __pyx_t_5numpy_int16_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":725 * ctypedef npy_int8 int8_t * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<< * ctypedef npy_int64 int64_t * #ctypedef npy_int96 int96_t */ typedef npy_int32 __pyx_t_5numpy_int32_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":726 * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<< * #ctypedef npy_int96 int96_t * #ctypedef npy_int128 int128_t */ typedef npy_int64 __pyx_t_5numpy_int64_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":730 * #ctypedef npy_int128 int128_t * * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<< * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t */ typedef npy_uint8 __pyx_t_5numpy_uint8_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":731 * * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<< * ctypedef npy_uint32 uint32_t * ctypedef npy_uint64 uint64_t */ typedef npy_uint16 __pyx_t_5numpy_uint16_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":732 * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<< * ctypedef npy_uint64 uint64_t * #ctypedef npy_uint96 uint96_t */ typedef npy_uint32 __pyx_t_5numpy_uint32_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":733 * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<< * #ctypedef npy_uint96 uint96_t * #ctypedef npy_uint128 uint128_t */ typedef npy_uint64 __pyx_t_5numpy_uint64_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":737 * #ctypedef npy_uint128 uint128_t * * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<< * ctypedef npy_float64 float64_t * #ctypedef npy_float80 float80_t */ typedef npy_float32 __pyx_t_5numpy_float32_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":738 * * ctypedef npy_float32 float32_t * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<< * #ctypedef npy_float80 float80_t * #ctypedef npy_float128 float128_t */ typedef npy_float64 __pyx_t_5numpy_float64_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":747 * # The int types are mapped a bit surprising -- * # numpy.int corresponds to 'l' and numpy.long to 'q' * ctypedef npy_long int_t # <<<<<<<<<<<<<< * ctypedef npy_longlong long_t * ctypedef npy_longlong longlong_t */ typedef npy_long __pyx_t_5numpy_int_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":748 * # numpy.int corresponds to 'l' and numpy.long to 'q' * ctypedef npy_long int_t * ctypedef npy_longlong long_t # <<<<<<<<<<<<<< * ctypedef npy_longlong longlong_t * */ typedef npy_longlong __pyx_t_5numpy_long_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":749 * ctypedef npy_long int_t * ctypedef npy_longlong long_t * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<< * * ctypedef npy_ulong uint_t */ typedef npy_longlong __pyx_t_5numpy_longlong_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":751 * ctypedef npy_longlong longlong_t * * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<< * ctypedef npy_ulonglong ulong_t * ctypedef npy_ulonglong ulonglong_t */ typedef npy_ulong __pyx_t_5numpy_uint_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":752 * * ctypedef npy_ulong uint_t * ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<< * ctypedef npy_ulonglong ulonglong_t * */ typedef npy_ulonglong __pyx_t_5numpy_ulong_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":753 * ctypedef npy_ulong uint_t * ctypedef npy_ulonglong ulong_t * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<< * * ctypedef npy_intp intp_t */ typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":755 * ctypedef npy_ulonglong ulonglong_t * * ctypedef npy_intp intp_t # <<<<<<<<<<<<<< * ctypedef npy_uintp uintp_t * */ typedef npy_intp __pyx_t_5numpy_intp_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":756 * * ctypedef npy_intp intp_t * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<< * * ctypedef npy_double float_t */ typedef npy_uintp __pyx_t_5numpy_uintp_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":758 * ctypedef npy_uintp uintp_t * * ctypedef npy_double float_t # <<<<<<<<<<<<<< * ctypedef npy_double double_t * ctypedef npy_longdouble longdouble_t */ typedef npy_double __pyx_t_5numpy_float_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":759 * * ctypedef npy_double float_t * ctypedef npy_double double_t # <<<<<<<<<<<<<< * ctypedef npy_longdouble longdouble_t * */ typedef npy_double __pyx_t_5numpy_double_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":760 * ctypedef npy_double float_t * ctypedef npy_double double_t * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<< * * ctypedef npy_cfloat cfloat_t */ typedef npy_longdouble __pyx_t_5numpy_longdouble_t; #if CYTHON_CCOMPLEX #ifdef __cplusplus typedef ::std::complex< float > __pyx_t_float_complex; #else typedef float _Complex __pyx_t_float_complex; #endif #else typedef struct { float real, imag; } __pyx_t_float_complex; #endif #if CYTHON_CCOMPLEX #ifdef __cplusplus typedef ::std::complex< double > __pyx_t_double_complex; #else typedef double _Complex __pyx_t_double_complex; #endif #else typedef struct { double real, imag; } __pyx_t_double_complex; #endif /*--- Type declarations ---*/ /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":762 * ctypedef npy_longdouble longdouble_t * * ctypedef npy_cfloat cfloat_t # <<<<<<<<<<<<<< * ctypedef npy_cdouble cdouble_t * ctypedef npy_clongdouble clongdouble_t */ typedef npy_cfloat __pyx_t_5numpy_cfloat_t; 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} else { size = __Pyx_BufFmt_TypeCharToStandardSize(ctx->enc_type, ctx->is_complex); } if (ctx->enc_packmode == '@') { size_t align_at = __Pyx_BufFmt_TypeCharToAlignment(ctx->enc_type, ctx->is_complex); size_t align_mod_offset; if (align_at == 0) return -1; align_mod_offset = ctx->fmt_offset % align_at; if (align_mod_offset > 0) ctx->fmt_offset += align_at - align_mod_offset; if (ctx->struct_alignment == 0) ctx->struct_alignment = __Pyx_BufFmt_TypeCharToPadding(ctx->enc_type, ctx->is_complex); } if (type->size != size || type->typegroup != group) { if (type->typegroup == 'C' && type->fields != NULL) { size_t parent_offset = ctx->head->parent_offset + field->offset; ++ctx->head; ctx->head->field = type->fields; ctx->head->parent_offset = parent_offset; continue; } if ((type->typegroup == 'H' || group == 'H') && type->size == size) { } else { __Pyx_BufFmt_RaiseExpected(ctx); return -1; } } offset = ctx->head->parent_offset + field->offset; if (ctx->fmt_offset != offset) { PyErr_Format(PyExc_ValueError, "Buffer dtype mismatch; next field is at offset %" CYTHON_FORMAT_SSIZE_T "d but %" CYTHON_FORMAT_SSIZE_T "d expected", (Py_ssize_t)ctx->fmt_offset, (Py_ssize_t)offset); return -1; } ctx->fmt_offset += size; if (arraysize) ctx->fmt_offset += (arraysize - 1) * size; --ctx->enc_count; /* Consume from buffer string */ while (1) { if (field == &ctx->root) { ctx->head = NULL; if (ctx->enc_count != 0) { __Pyx_BufFmt_RaiseExpected(ctx); return -1; } break; /* breaks both loops as ctx->enc_count == 0 */ } ctx->head->field = ++field; if (field->type == NULL) { --ctx->head; field = ctx->head->field; continue; } else if (field->type->typegroup == 'S') { size_t parent_offset = ctx->head->parent_offset + field->offset; if (field->type->fields->type == NULL) continue; /* empty struct */ field = field->type->fields; ++ctx->head; ctx->head->field = field; ctx->head->parent_offset = parent_offset; break; } else { break; } } } while (ctx->enc_count); ctx->enc_type = 0; ctx->is_complex = 0; return 0; } static CYTHON_INLINE PyObject * __pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp) { const char *ts = *tsp; int i = 0, number; int ndim = ctx->head->field->type->ndim; ; ++ts; if (ctx->new_count != 1) { PyErr_SetString(PyExc_ValueError, "Cannot handle repeated arrays in format string"); return NULL; } if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; while (*ts && *ts != ')') { switch (*ts) { case ' ': case '\f': case '\r': case '\n': case '\t': case '\v': continue; default: break; /* not a 'break' in the loop */ } number = __Pyx_BufFmt_ExpectNumber(&ts); if (number == -1) return NULL; if (i < ndim && (size_t) number != ctx->head->field->type->arraysize[i]) return PyErr_Format(PyExc_ValueError, "Expected a dimension of size %zu, got %d", ctx->head->field->type->arraysize[i], number); if (*ts != ',' && *ts != ')') return PyErr_Format(PyExc_ValueError, "Expected a comma in format string, got '%c'", *ts); if (*ts == ',') ts++; i++; } if (i != ndim) return PyErr_Format(PyExc_ValueError, "Expected %d dimension(s), got %d", ctx->head->field->type->ndim, i); if (!*ts) { PyErr_SetString(PyExc_ValueError, "Unexpected end of format string, expected ')'"); return NULL; } ctx->is_valid_array = 1; ctx->new_count = 1; *tsp = ++ts; return Py_None; } static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts) { int got_Z = 0; while (1) { switch(*ts) { case 0: if (ctx->enc_type != 0 && ctx->head == NULL) { __Pyx_BufFmt_RaiseExpected(ctx); return NULL; } if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; if (ctx->head != NULL) { __Pyx_BufFmt_RaiseExpected(ctx); return NULL; } return ts; case ' ': case '\r': case '\n': ++ts; break; case '<': if (!__Pyx_IsLittleEndian()) { PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler"); return NULL; } ctx->new_packmode = '='; ++ts; break; case '>': case '!': if (__Pyx_IsLittleEndian()) { PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler"); return NULL; } ctx->new_packmode = '='; ++ts; break; case '=': case '@': case '^': ctx->new_packmode = *ts++; break; case 'T': /* substruct */ { const char* ts_after_sub; size_t i, struct_count = ctx->new_count; size_t struct_alignment = ctx->struct_alignment; ctx->new_count = 1; ++ts; if (*ts != '{') { PyErr_SetString(PyExc_ValueError, "Buffer acquisition: Expected '{' after 'T'"); return NULL; } if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; ctx->enc_type = 0; /* Erase processed last struct element */ ctx->enc_count = 0; ctx->struct_alignment = 0; ++ts; ts_after_sub = ts; for (i = 0; i != struct_count; ++i) { ts_after_sub = __Pyx_BufFmt_CheckString(ctx, ts); if (!ts_after_sub) return NULL; } ts = ts_after_sub; if (struct_alignment) ctx->struct_alignment = struct_alignment; } break; case '}': /* end of substruct; either repeat or move on */ { size_t alignment = ctx->struct_alignment; ++ts; if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; ctx->enc_type = 0; /* Erase processed last struct element */ if (alignment && ctx->fmt_offset % alignment) { ctx->fmt_offset += alignment - (ctx->fmt_offset % alignment); } } return ts; case 'x': if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; ctx->fmt_offset += ctx->new_count; ctx->new_count = 1; ctx->enc_count = 0; ctx->enc_type = 0; ctx->enc_packmode = ctx->new_packmode; ++ts; break; case 'Z': got_Z = 1; ++ts; if (*ts != 'f' && *ts != 'd' && *ts != 'g') { __Pyx_BufFmt_RaiseUnexpectedChar('Z'); return NULL; } case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I': case 'l': case 'L': case 'q': case 'Q': case 'f': case 'd': case 'g': case 'O': case 'p': if (ctx->enc_type == *ts && got_Z == ctx->is_complex && ctx->enc_packmode == ctx->new_packmode) { ctx->enc_count += ctx->new_count; ctx->new_count = 1; got_Z = 0; ++ts; break; } case 's': if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; ctx->enc_count = ctx->new_count; ctx->enc_packmode = ctx->new_packmode; ctx->enc_type = *ts; ctx->is_complex = got_Z; ++ts; ctx->new_count = 1; got_Z = 0; break; case ':': ++ts; while(*ts != ':') ++ts; ++ts; break; case '(': if (!__pyx_buffmt_parse_array(ctx, &ts)) return NULL; break; default: { int number = __Pyx_BufFmt_ExpectNumber(&ts); if (number == -1) return NULL; ctx->new_count = (size_t)number; } } } } static CYTHON_INLINE void __Pyx_ZeroBuffer(Py_buffer* buf) { buf->buf = NULL; buf->obj = NULL; buf->strides = __Pyx_zeros; buf->shape = __Pyx_zeros; buf->suboffsets = __Pyx_minusones; } static CYTHON_INLINE int __Pyx_GetBufferAndValidate( Py_buffer* buf, PyObject* obj, __Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack) { if (obj == Py_None || obj == NULL) { __Pyx_ZeroBuffer(buf); return 0; } buf->buf = NULL; if (__Pyx_GetBuffer(obj, buf, flags) == -1) goto fail; if (buf->ndim != nd) { PyErr_Format(PyExc_ValueError, "Buffer has wrong number of dimensions (expected %d, got %d)", nd, buf->ndim); goto fail; } if (!cast) { __Pyx_BufFmt_Context ctx; __Pyx_BufFmt_Init(&ctx, stack, dtype); if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail; } if ((unsigned)buf->itemsize != dtype->size) { PyErr_Format(PyExc_ValueError, "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "d byte%s) does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "d byte%s)", buf->itemsize, (buf->itemsize > 1) ? "s" : "", dtype->name, (Py_ssize_t)dtype->size, (dtype->size > 1) ? "s" : ""); goto fail; } if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones; return 0; fail:; __Pyx_ZeroBuffer(buf); return -1; } static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) { if (info->buf == NULL) return; if (info->suboffsets == __Pyx_minusones) info->suboffsets = NULL; __Pyx_ReleaseBuffer(info); } static void __Pyx_RaiseBufferIndexError(int axis) { PyErr_Format(PyExc_IndexError, "Out of bounds on buffer access (axis %d)", axis); } static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb) { #if CYTHON_COMPILING_IN_CPYTHON PyObject *tmp_type, *tmp_value, *tmp_tb; PyThreadState *tstate = PyThreadState_GET(); tmp_type = tstate->curexc_type; tmp_value = tstate->curexc_value; tmp_tb = tstate->curexc_traceback; tstate->curexc_type = type; tstate->curexc_value = value; tstate->curexc_traceback = tb; Py_XDECREF(tmp_type); Py_XDECREF(tmp_value); Py_XDECREF(tmp_tb); #else PyErr_Restore(type, value, tb); #endif } static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb) { #if CYTHON_COMPILING_IN_CPYTHON PyThreadState *tstate = PyThreadState_GET(); *type = tstate->curexc_type; *value = tstate->curexc_value; *tb = tstate->curexc_traceback; tstate->curexc_type = 0; tstate->curexc_value = 0; tstate->curexc_traceback = 0; #else PyErr_Fetch(type, value, tb); #endif } static void __Pyx_RaiseArgtupleInvalid( const char* func_name, int exact, Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found) { Py_ssize_t num_expected; const char *more_or_less; if (num_found < num_min) { num_expected = num_min; more_or_less = "at least"; } else { num_expected = num_max; more_or_less = "at most"; } if (exact) { more_or_less = "exactly"; } PyErr_Format(PyExc_TypeError, "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)", func_name, more_or_less, num_expected, (num_expected == 1) ? "" : "s", num_found); } static void __Pyx_RaiseDoubleKeywordsError( const char* func_name, PyObject* kw_name) { PyErr_Format(PyExc_TypeError, #if PY_MAJOR_VERSION >= 3 "%s() got multiple values for keyword argument '%U'", func_name, kw_name); #else "%s() got multiple values for keyword argument '%s'", func_name, PyString_AsString(kw_name)); #endif } static int __Pyx_ParseOptionalKeywords( PyObject *kwds, PyObject **argnames[], PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, const char* function_name) { PyObject *key = 0, *value = 0; Py_ssize_t pos = 0; PyObject*** name; PyObject*** first_kw_arg = argnames + num_pos_args; while (PyDict_Next(kwds, &pos, &key, &value)) { name = first_kw_arg; while (*name && (**name != key)) name++; if (*name) { values[name-argnames] = value; continue; } name = first_kw_arg; #if PY_MAJOR_VERSION < 3 if (likely(PyString_CheckExact(key)) || likely(PyString_Check(key))) { while (*name) { if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key)) && _PyString_Eq(**name, key)) { values[name-argnames] = value; break; } name++; } if (*name) continue; else { PyObject*** argname = argnames; while (argname != first_kw_arg) { if ((**argname == key) || ( (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key)) && _PyString_Eq(**argname, key))) { goto arg_passed_twice; } argname++; } } } else #endif if (likely(PyUnicode_Check(key))) { while (*name) { int cmp = (**name == key) ? 0 : #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : #endif PyUnicode_Compare(**name, key); if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; if (cmp == 0) { values[name-argnames] = value; break; } name++; } if (*name) continue; else { PyObject*** argname = argnames; while (argname != first_kw_arg) { int cmp = (**argname == key) ? 0 : #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : #endif PyUnicode_Compare(**argname, key); if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; if (cmp == 0) goto arg_passed_twice; argname++; } } } else goto invalid_keyword_type; if (kwds2) { if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad; } else { goto invalid_keyword; } } return 0; arg_passed_twice: __Pyx_RaiseDoubleKeywordsError(function_name, key); goto bad; invalid_keyword_type: PyErr_Format(PyExc_TypeError, "%.200s() keywords must be strings", function_name); goto bad; invalid_keyword: PyErr_Format(PyExc_TypeError, #if PY_MAJOR_VERSION < 3 "%.200s() got an unexpected keyword argument '%.200s'", function_name, PyString_AsString(key)); #else "%s() got an unexpected keyword argument '%U'", function_name, key); #endif bad: return -1; } #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) { PyObject *result; ternaryfunc call = func->ob_type->tp_call; if (unlikely(!call)) return PyObject_Call(func, arg, kw); #if PY_VERSION_HEX >= 0x02060000 if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) return NULL; #endif result = (*call)(func, arg, kw); #if PY_VERSION_HEX >= 0x02060000 Py_LeaveRecursiveCall(); #endif if (unlikely(!result) && unlikely(!PyErr_Occurred())) { PyErr_SetString( PyExc_SystemError, "NULL result without error in PyObject_Call"); } return result; } #endif #if PY_MAJOR_VERSION < 3 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, CYTHON_UNUSED PyObject *cause) { Py_XINCREF(type); if (!value || value == Py_None) value = NULL; else Py_INCREF(value); if (!tb || tb == Py_None) tb = NULL; else { Py_INCREF(tb); if (!PyTraceBack_Check(tb)) { PyErr_SetString(PyExc_TypeError, "raise: arg 3 must be a traceback or None"); goto raise_error; } } #if PY_VERSION_HEX < 0x02050000 if (PyClass_Check(type)) { #else if (PyType_Check(type)) { #endif #if CYTHON_COMPILING_IN_PYPY if (!value) { Py_INCREF(Py_None); value = Py_None; } #endif PyErr_NormalizeException(&type, &value, &tb); } else { if (value) { PyErr_SetString(PyExc_TypeError, "instance exception may not have a separate value"); goto raise_error; } value = type; #if PY_VERSION_HEX < 0x02050000 if (PyInstance_Check(type)) { type = (PyObject*) ((PyInstanceObject*)type)->in_class; Py_INCREF(type); } else { type = 0; PyErr_SetString(PyExc_TypeError, "raise: exception must be an old-style class or instance"); goto raise_error; } #else type = (PyObject*) Py_TYPE(type); Py_INCREF(type); if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) { PyErr_SetString(PyExc_TypeError, "raise: exception class must be a subclass of BaseException"); goto raise_error; } #endif } __Pyx_ErrRestore(type, value, tb); return; raise_error: Py_XDECREF(value); Py_XDECREF(type); Py_XDECREF(tb); return; } #else /* Python 3+ */ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { PyObject* owned_instance = NULL; if (tb == Py_None) { tb = 0; } else if (tb && !PyTraceBack_Check(tb)) { PyErr_SetString(PyExc_TypeError, "raise: arg 3 must be a traceback or None"); goto bad; } if (value == Py_None) value = 0; if (PyExceptionInstance_Check(type)) { if (value) { PyErr_SetString(PyExc_TypeError, "instance exception may not have a separate value"); goto bad; } value = type; type = (PyObject*) Py_TYPE(value); } else if (PyExceptionClass_Check(type)) { PyObject *instance_class = NULL; if (value && PyExceptionInstance_Check(value)) { instance_class = (PyObject*) Py_TYPE(value); if (instance_class != type) { if (PyObject_IsSubclass(instance_class, type)) { type = instance_class; } else { instance_class = NULL; } } } if (!instance_class) { PyObject *args; if (!value) args = PyTuple_New(0); else if (PyTuple_Check(value)) { Py_INCREF(value); args = value; } else args = PyTuple_Pack(1, value); if (!args) goto bad; owned_instance = PyObject_Call(type, args, NULL); Py_DECREF(args); if (!owned_instance) goto bad; value = owned_instance; if (!PyExceptionInstance_Check(value)) { PyErr_Format(PyExc_TypeError, "calling %R should have returned an instance of " "BaseException, not %R", type, Py_TYPE(value)); goto bad; } } } else { PyErr_SetString(PyExc_TypeError, "raise: exception class must be a subclass of BaseException"); goto bad; } #if PY_VERSION_HEX >= 0x03030000 if (cause) { #else if (cause && cause != Py_None) { #endif PyObject *fixed_cause; if (cause == Py_None) { fixed_cause = NULL; } else if (PyExceptionClass_Check(cause)) { fixed_cause = PyObject_CallObject(cause, NULL); if (fixed_cause == NULL) goto bad; } else if (PyExceptionInstance_Check(cause)) { fixed_cause = cause; Py_INCREF(fixed_cause); } else { PyErr_SetString(PyExc_TypeError, "exception causes must derive from " "BaseException"); goto bad; } PyException_SetCause(value, fixed_cause); } PyErr_SetObject(type, value); if (tb) { PyThreadState *tstate = PyThreadState_GET(); PyObject* tmp_tb = tstate->curexc_traceback; if (tb != tmp_tb) { Py_INCREF(tb); tstate->curexc_traceback = tb; Py_XDECREF(tmp_tb); } } bad: Py_XDECREF(owned_instance); return; } #endif static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { PyErr_Format(PyExc_ValueError, "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); } static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { PyErr_Format(PyExc_ValueError, "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", index, (index == 1) ? "" : "s"); } static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); } static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { if (unlikely(!type)) { PyErr_SetString(PyExc_SystemError, "Missing type object"); return 0; } if (likely(PyObject_TypeCheck(obj, type))) return 1; PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", Py_TYPE(obj)->tp_name, type->tp_name); return 0; } #if PY_MAJOR_VERSION < 3 static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags) { #if PY_VERSION_HEX >= 0x02060000 if (PyObject_CheckBuffer(obj)) return PyObject_GetBuffer(obj, view, flags); #endif if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) return __pyx_pw_5numpy_7ndarray_1__getbuffer__(obj, view, flags); #if PY_VERSION_HEX < 0x02060000 if (obj->ob_type->tp_dict) { PyObject *getbuffer_cobj = PyObject_GetItem( obj->ob_type->tp_dict, __pyx_n_s_pyx_getbuffer); if (getbuffer_cobj) { getbufferproc func = (getbufferproc) PyCObject_AsVoidPtr(getbuffer_cobj); Py_DECREF(getbuffer_cobj); if (!func) goto fail; return func(obj, view, flags); } else { PyErr_Clear(); } } #endif PyErr_Format(PyExc_TypeError, "'%.200s' does not have the buffer interface", Py_TYPE(obj)->tp_name); #if PY_VERSION_HEX < 0x02060000 fail: #endif return -1; } static void __Pyx_ReleaseBuffer(Py_buffer *view) { PyObject *obj = view->obj; if (!obj) return; #if PY_VERSION_HEX >= 0x02060000 if (PyObject_CheckBuffer(obj)) { PyBuffer_Release(view); return; } #endif if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) { __pyx_pw_5numpy_7ndarray_3__releasebuffer__(obj, view); return; } #if PY_VERSION_HEX < 0x02060000 if (obj->ob_type->tp_dict) { PyObject *releasebuffer_cobj = PyObject_GetItem( obj->ob_type->tp_dict, __pyx_n_s_pyx_releasebuffer); if (releasebuffer_cobj) { releasebufferproc func = (releasebufferproc) PyCObject_AsVoidPtr(releasebuffer_cobj); Py_DECREF(releasebuffer_cobj); if (!func) goto fail; func(obj, view); return; } else { PyErr_Clear(); } } #endif goto nofail; #if PY_VERSION_HEX < 0x02060000 fail: #endif PyErr_WriteUnraisable(obj); nofail: Py_DECREF(obj); view->obj = NULL; } #endif /* PY_MAJOR_VERSION < 3 */ static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { PyObject *empty_list = 0; PyObject *module = 0; PyObject *global_dict = 0; PyObject *empty_dict = 0; PyObject *list; #if PY_VERSION_HEX < 0x03030000 PyObject *py_import; py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); if (!py_import) goto bad; #endif if (from_list) list = from_list; else { empty_list = PyList_New(0); if (!empty_list) goto bad; list = empty_list; } global_dict = PyModule_GetDict(__pyx_m); if (!global_dict) goto bad; empty_dict = PyDict_New(); if (!empty_dict) goto bad; #if PY_VERSION_HEX >= 0x02050000 { #if PY_MAJOR_VERSION >= 3 if (level == -1) { if (strchr(__Pyx_MODULE_NAME, '.')) { #if PY_VERSION_HEX < 0x03030000 PyObject *py_level = PyInt_FromLong(1); if (!py_level) goto bad; module = PyObject_CallFunctionObjArgs(py_import, name, global_dict, empty_dict, list, py_level, NULL); Py_DECREF(py_level); #else module = PyImport_ImportModuleLevelObject( name, global_dict, empty_dict, list, 1); #endif if (!module) { if (!PyErr_ExceptionMatches(PyExc_ImportError)) goto bad; PyErr_Clear(); } } level = 0; /* try absolute import on failure */ } #endif if (!module) { #if PY_VERSION_HEX < 0x03030000 PyObject *py_level = PyInt_FromLong(level); if (!py_level) goto bad; module = PyObject_CallFunctionObjArgs(py_import, name, global_dict, empty_dict, list, py_level, NULL); Py_DECREF(py_level); #else module = PyImport_ImportModuleLevelObject( name, global_dict, empty_dict, list, level); #endif } } #else if (level>0) { PyErr_SetString(PyExc_RuntimeError, "Relative import is not supported for Python <=2.4."); goto bad; } module = PyObject_CallFunctionObjArgs(py_import, name, global_dict, empty_dict, list, NULL); #endif bad: #if PY_VERSION_HEX < 0x03030000 Py_XDECREF(py_import); #endif Py_XDECREF(empty_list); Py_XDECREF(empty_dict); return module; } #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func) \ { \ func_type value = func(x); \ if (sizeof(target_type) < sizeof(func_type)) { \ if (unlikely(value != (func_type) (target_type) value)) { \ func_type zero = 0; \ PyErr_SetString(PyExc_OverflowError, \ (is_unsigned && unlikely(value < zero)) ? \ "can't convert negative value to " #target_type : \ "value too large to convert to " #target_type); \ return (target_type) -1; \ } \ } \ return (target_type) value; \ } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { const int neg_one = (int) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(int) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to int"); return (int) -1; } return (int) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(int)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (int) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to int"); return (int) -1; } if (sizeof(int) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(int, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(int) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(int, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(int)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(int) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(int) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(int) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(int, long, PyLong_AsLong) } else if (sizeof(int) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(int, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else int val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (int) -1; } } else { int val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (int) -1; val = __Pyx_PyInt_As_int(tmp); Py_DECREF(tmp); return val; } } #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return ::std::complex< float >(x, y); } #else static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return x + y*(__pyx_t_float_complex)_Complex_I; } #endif #else static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { __pyx_t_float_complex z; z.real = x; z.imag = y; return z; } #endif #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex a, __pyx_t_float_complex b) { return (a.real == b.real) && (a.imag == b.imag); } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; z.real = a.real + b.real; z.imag = a.imag + b.imag; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; z.real = a.real - b.real; z.imag = a.imag - b.imag; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; z.real = a.real * b.real - a.imag * b.imag; z.imag = a.real * b.imag + a.imag * b.real; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; float denom = b.real * b.real + b.imag * b.imag; z.real = (a.real * b.real + a.imag * b.imag) / denom; z.imag = (a.imag * b.real - a.real * b.imag) / denom; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex a) { __pyx_t_float_complex z; z.real = -a.real; z.imag = -a.imag; return z; } static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex a) { return (a.real == 0) && (a.imag == 0); } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex a) { __pyx_t_float_complex z; z.real = a.real; z.imag = -a.imag; return z; } #if 1 static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex z) { #if !defined(HAVE_HYPOT) || defined(_MSC_VER) return sqrtf(z.real*z.real + z.imag*z.imag); #else return hypotf(z.real, z.imag); #endif } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; float r, lnr, theta, z_r, z_theta; if (b.imag == 0 && b.real == (int)b.real) { if (b.real < 0) { float denom = a.real * a.real + a.imag * a.imag; a.real = a.real / denom; a.imag = -a.imag / denom; b.real = -b.real; } switch ((int)b.real) { case 0: z.real = 1; z.imag = 0; return z; case 1: return a; case 2: z = __Pyx_c_prodf(a, a); return __Pyx_c_prodf(a, a); case 3: z = __Pyx_c_prodf(a, a); return __Pyx_c_prodf(z, a); case 4: z = __Pyx_c_prodf(a, a); return __Pyx_c_prodf(z, z); } } if (a.imag == 0) { if (a.real == 0) { return a; } r = a.real; theta = 0; } else { r = __Pyx_c_absf(a); theta = atan2f(a.imag, a.real); } lnr = logf(r); z_r = expf(lnr * b.real - theta * b.imag); z_theta = theta * b.real + lnr * b.imag; z.real = z_r * cosf(z_theta); z.imag = z_r * sinf(z_theta); return z; } #endif #endif #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return ::std::complex< double >(x, y); } #else static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return x + y*(__pyx_t_double_complex)_Complex_I; } #endif #else static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { __pyx_t_double_complex z; z.real = x; z.imag = y; return z; } #endif #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex a, __pyx_t_double_complex b) { return (a.real == b.real) && (a.imag == b.imag); } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; z.real = a.real + b.real; z.imag = a.imag + b.imag; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; z.real = a.real - b.real; z.imag = a.imag - b.imag; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; z.real = a.real * b.real - a.imag * b.imag; z.imag = a.real * b.imag + a.imag * b.real; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; double denom = b.real * b.real + b.imag * b.imag; z.real = (a.real * b.real + a.imag * b.imag) / denom; z.imag = (a.imag * b.real - a.real * b.imag) / denom; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex a) { __pyx_t_double_complex z; z.real = -a.real; z.imag = -a.imag; return z; } static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex a) { return (a.real == 0) && (a.imag == 0); } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex a) { __pyx_t_double_complex z; z.real = a.real; z.imag = -a.imag; return z; } #if 1 static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex z) { #if !defined(HAVE_HYPOT) || defined(_MSC_VER) return sqrt(z.real*z.real + z.imag*z.imag); #else return hypot(z.real, z.imag); #endif } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; double r, lnr, theta, z_r, z_theta; if (b.imag == 0 && b.real == (int)b.real) { if (b.real < 0) { double denom = a.real * a.real + a.imag * a.imag; a.real = a.real / denom; a.imag = -a.imag / denom; b.real = -b.real; } switch ((int)b.real) { case 0: z.real = 1; z.imag = 0; return z; case 1: return a; case 2: z = __Pyx_c_prod(a, a); return __Pyx_c_prod(a, a); case 3: z = __Pyx_c_prod(a, a); return __Pyx_c_prod(z, a); case 4: z = __Pyx_c_prod(a, a); return __Pyx_c_prod(z, z); } } if (a.imag == 0) { if (a.real == 0) { return a; } r = a.real; theta = 0; } else { r = __Pyx_c_abs(a); theta = atan2(a.imag, a.real); } lnr = log(r); z_r = exp(lnr * b.real - theta * b.imag); z_theta = theta * b.real + lnr * b.imag; z.real = z_r * cos(z_theta); z.imag = z_r * sin(z_theta); return z; } #endif #endif static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { const int neg_one = (int) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(int) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(int) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); } else if (sizeof(int) <= sizeof(unsigned long long)) { return PyLong_FromUnsignedLongLong((unsigned long long) value); } } else { if (sizeof(int) <= sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(int) <= sizeof(long long)) { return PyLong_FromLongLong((long long) value); } } { int one = 1; int little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&value; return _PyLong_FromByteArray(bytes, sizeof(int), little, !is_unsigned); } } static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { const long neg_one = (long) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(long) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(long) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); } else if (sizeof(long) <= sizeof(unsigned long long)) { return PyLong_FromUnsignedLongLong((unsigned long long) value); } } else { if (sizeof(long) <= sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(long) <= sizeof(long long)) { return PyLong_FromLongLong((long long) value); } } { int one = 1; int little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&value; return _PyLong_FromByteArray(bytes, sizeof(long), little, !is_unsigned); } } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { const long neg_one = (long) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(long) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to long"); return (long) -1; } return (long) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(long)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (long) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to long"); return (long) -1; } if (sizeof(long) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(long, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(long) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(long, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(long)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(long) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(long) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(long) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(long, long, PyLong_AsLong) } else if (sizeof(long) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(long, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else long val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (long) -1; } } else { long val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (long) -1; val = __Pyx_PyInt_As_long(tmp); Py_DECREF(tmp); return val; } } static int __Pyx_check_binary_version(void) { char ctversion[4], rtversion[4]; PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) { char message[200]; PyOS_snprintf(message, sizeof(message), "compiletime version %s of module '%.100s' " "does not match runtime version %s", ctversion, __Pyx_MODULE_NAME, rtversion); #if PY_VERSION_HEX < 0x02050000 return PyErr_Warn(NULL, message); #else return PyErr_WarnEx(NULL, message, 1); #endif } return 0; } #ifndef __PYX_HAVE_RT_ImportModule #define __PYX_HAVE_RT_ImportModule static PyObject *__Pyx_ImportModule(const char *name) { PyObject *py_name = 0; PyObject *py_module = 0; py_name = __Pyx_PyIdentifier_FromString(name); if (!py_name) goto bad; py_module = PyImport_Import(py_name); Py_DECREF(py_name); return py_module; bad: Py_XDECREF(py_name); return 0; } #endif #ifndef __PYX_HAVE_RT_ImportType #define __PYX_HAVE_RT_ImportType static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict) { PyObject *py_module = 0; PyObject *result = 0; PyObject *py_name = 0; char warning[200]; Py_ssize_t basicsize; #ifdef Py_LIMITED_API PyObject *py_basicsize; #endif py_module = __Pyx_ImportModule(module_name); if (!py_module) goto bad; py_name = __Pyx_PyIdentifier_FromString(class_name); if (!py_name) goto bad; result = PyObject_GetAttr(py_module, py_name); Py_DECREF(py_name); py_name = 0; Py_DECREF(py_module); py_module = 0; if (!result) goto bad; if (!PyType_Check(result)) { PyErr_Format(PyExc_TypeError, "%.200s.%.200s is not a type object", module_name, class_name); goto bad; } #ifndef Py_LIMITED_API basicsize = ((PyTypeObject *)result)->tp_basicsize; #else py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); if (!py_basicsize) goto bad; basicsize = PyLong_AsSsize_t(py_basicsize); Py_DECREF(py_basicsize); py_basicsize = 0; if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) goto bad; #endif if (!strict && (size_t)basicsize > size) { PyOS_snprintf(warning, sizeof(warning), "%s.%s size changed, may indicate binary incompatibility", module_name, class_name); #if PY_VERSION_HEX < 0x02050000 if (PyErr_Warn(NULL, warning) < 0) goto bad; #else if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad; #endif } else if ((size_t)basicsize != size) { PyErr_Format(PyExc_ValueError, "%.200s.%.200s has the wrong size, try recompiling", module_name, class_name); goto bad; } return (PyTypeObject *)result; bad: Py_XDECREF(py_module); Py_XDECREF(result); return NULL; } #endif static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { int start = 0, mid = 0, end = count - 1; if (end >= 0 && code_line > entries[end].code_line) { return count; } while (start < end) { mid = (start + end) / 2; if (code_line < entries[mid].code_line) { end = mid; } else if (code_line > entries[mid].code_line) { start = mid + 1; } else { return mid; } } if (code_line <= entries[mid].code_line) { return mid; } else { return mid + 1; } } static PyCodeObject *__pyx_find_code_object(int code_line) { PyCodeObject* code_object; int pos; if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) { return NULL; } pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) { return NULL; } code_object = __pyx_code_cache.entries[pos].code_object; Py_INCREF(code_object); return code_object; } static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { int pos, i; __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries; if (unlikely(!code_line)) { return; } if (unlikely(!entries)) { entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry)); if (likely(entries)) { __pyx_code_cache.entries = entries; __pyx_code_cache.max_count = 64; __pyx_code_cache.count = 1; entries[0].code_line = code_line; entries[0].code_object = code_object; Py_INCREF(code_object); } return; } pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) { PyCodeObject* tmp = entries[pos].code_object; entries[pos].code_object = code_object; Py_DECREF(tmp); return; } if (__pyx_code_cache.count == __pyx_code_cache.max_count) { int new_max = __pyx_code_cache.max_count + 64; entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc( __pyx_code_cache.entries, new_max*sizeof(__Pyx_CodeObjectCacheEntry)); if (unlikely(!entries)) { return; } __pyx_code_cache.entries = entries; __pyx_code_cache.max_count = new_max; } for (i=__pyx_code_cache.count; i>pos; i--) { entries[i] = entries[i-1]; } entries[pos].code_line = code_line; entries[pos].code_object = code_object; __pyx_code_cache.count++; Py_INCREF(code_object); } #include "compile.h" #include "frameobject.h" #include "traceback.h" static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = 0; PyObject *py_srcfile = 0; PyObject *py_funcname = 0; #if PY_MAJOR_VERSION < 3 py_srcfile = PyString_FromString(filename); #else py_srcfile = PyUnicode_FromString(filename); #endif if (!py_srcfile) goto bad; if (c_line) { #if PY_MAJOR_VERSION < 3 py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); #else py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); #endif } else { #if PY_MAJOR_VERSION < 3 py_funcname = PyString_FromString(funcname); #else py_funcname = PyUnicode_FromString(funcname); #endif } if (!py_funcname) goto bad; py_code = __Pyx_PyCode_New( 0, /*int argcount,*/ 0, /*int kwonlyargcount,*/ 0, /*int nlocals,*/ 0, /*int stacksize,*/ 0, /*int flags,*/ __pyx_empty_bytes, /*PyObject *code,*/ __pyx_empty_tuple, /*PyObject *consts,*/ __pyx_empty_tuple, /*PyObject *names,*/ __pyx_empty_tuple, /*PyObject *varnames,*/ __pyx_empty_tuple, /*PyObject *freevars,*/ __pyx_empty_tuple, /*PyObject *cellvars,*/ py_srcfile, /*PyObject *filename,*/ py_funcname, /*PyObject *name,*/ py_line, /*int firstlineno,*/ __pyx_empty_bytes /*PyObject *lnotab*/ ); Py_DECREF(py_srcfile); Py_DECREF(py_funcname); return py_code; bad: Py_XDECREF(py_srcfile); Py_XDECREF(py_funcname); return NULL; } static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = 0; PyObject *py_globals = 0; PyFrameObject *py_frame = 0; py_code = __pyx_find_code_object(c_line ? c_line : py_line); if (!py_code) { py_code = __Pyx_CreateCodeObjectForTraceback( funcname, c_line, py_line, filename); if (!py_code) goto bad; __pyx_insert_code_object(c_line ? c_line : py_line, py_code); } py_globals = PyModule_GetDict(__pyx_m); if (!py_globals) goto bad; py_frame = PyFrame_New( PyThreadState_GET(), /*PyThreadState *tstate,*/ py_code, /*PyCodeObject *code,*/ py_globals, /*PyObject *globals,*/ 0 /*PyObject *locals*/ ); if (!py_frame) goto bad; py_frame->f_lineno = py_line; PyTraceBack_Here(py_frame); bad: Py_XDECREF(py_code); Py_XDECREF(py_frame); } static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { while (t->p) { #if PY_MAJOR_VERSION < 3 if (t->is_unicode) { *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL); } else if (t->intern) { *t->p = PyString_InternFromString(t->s); } else { *t->p = PyString_FromStringAndSize(t->s, t->n - 1); } #else /* Python 3+ has unicode identifiers */ if (t->is_unicode | t->is_str) { if (t->intern) { *t->p = PyUnicode_InternFromString(t->s); } else if (t->encoding) { *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL); } else { *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1); } } else { *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1); } #endif if (!*t->p) return -1; ++t; } return 0; } static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { return __Pyx_PyUnicode_FromStringAndSize(c_str, strlen(c_str)); } static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) { Py_ssize_t ignore; return __Pyx_PyObject_AsStringAndSize(o, &ignore); } static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT if ( #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII __Pyx_sys_getdefaultencoding_not_ascii && #endif PyUnicode_Check(o)) { #if PY_VERSION_HEX < 0x03030000 char* defenc_c; PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL); if (!defenc) return NULL; defenc_c = PyBytes_AS_STRING(defenc); #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII { char* end = defenc_c + PyBytes_GET_SIZE(defenc); char* c; for (c = defenc_c; c < end; c++) { if ((unsigned char) (*c) >= 128) { PyUnicode_AsASCIIString(o); return NULL; } } } #endif /*__PYX_DEFAULT_STRING_ENCODING_IS_ASCII*/ *length = PyBytes_GET_SIZE(defenc); return defenc_c; #else /* PY_VERSION_HEX < 0x03030000 */ if (PyUnicode_READY(o) == -1) return NULL; #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII if (PyUnicode_IS_ASCII(o)) { *length = PyUnicode_GET_LENGTH(o); return PyUnicode_AsUTF8(o); } else { PyUnicode_AsASCIIString(o); return NULL; } #else /* __PYX_DEFAULT_STRING_ENCODING_IS_ASCII */ return PyUnicode_AsUTF8AndSize(o, length); #endif /* __PYX_DEFAULT_STRING_ENCODING_IS_ASCII */ #endif /* PY_VERSION_HEX < 0x03030000 */ } else #endif /* __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT */ #if !CYTHON_COMPILING_IN_PYPY #if PY_VERSION_HEX >= 0x02060000 if (PyByteArray_Check(o)) { *length = PyByteArray_GET_SIZE(o); return PyByteArray_AS_STRING(o); } else #endif #endif { char* result; int r = PyBytes_AsStringAndSize(o, &result, length); if (unlikely(r < 0)) { return NULL; } else { return result; } } } static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { int is_true = x == Py_True; if (is_true | (x == Py_False) | (x == Py_None)) return is_true; else return PyObject_IsTrue(x); } static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x) { PyNumberMethods *m; const char *name = NULL; PyObject *res = NULL; #if PY_MAJOR_VERSION < 3 if (PyInt_Check(x) || PyLong_Check(x)) #else if (PyLong_Check(x)) #endif return Py_INCREF(x), x; m = Py_TYPE(x)->tp_as_number; #if PY_MAJOR_VERSION < 3 if (m && m->nb_int) { name = "int"; res = PyNumber_Int(x); } else if (m && m->nb_long) { name = "long"; res = PyNumber_Long(x); } #else if (m && m->nb_int) { name = "int"; res = PyNumber_Long(x); } #endif if (res) { #if PY_MAJOR_VERSION < 3 if (!PyInt_Check(res) && !PyLong_Check(res)) { #else if (!PyLong_Check(res)) { #endif PyErr_Format(PyExc_TypeError, "__%.4s__ returned non-%.4s (type %.200s)", name, name, Py_TYPE(res)->tp_name); Py_DECREF(res); return NULL; } } else if (!PyErr_Occurred()) { PyErr_SetString(PyExc_TypeError, "an integer is required"); } return res; } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { Py_ssize_t ival; PyObject *x; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_CheckExact(b))) return PyInt_AS_LONG(b); #endif if (likely(PyLong_CheckExact(b))) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS switch (Py_SIZE(b)) { case -1: return -(sdigit)((PyLongObject*)b)->ob_digit[0]; case 0: return 0; case 1: return ((PyLongObject*)b)->ob_digit[0]; } #endif #endif #if PY_VERSION_HEX < 0x02060000 return PyInt_AsSsize_t(b); #else return PyLong_AsSsize_t(b); #endif } x = PyNumber_Index(b); if (!x) return -1; ival = PyInt_AsSsize_t(x); Py_DECREF(x); return ival; } static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { #if PY_VERSION_HEX < 0x02050000 if (ival <= LONG_MAX) return PyInt_FromLong((long)ival); else { unsigned char *bytes = (unsigned char *) &ival; int one = 1; int little = (int)*(unsigned char*)&one; return _PyLong_FromByteArray(bytes, sizeof(size_t), little, 0); } #else return PyInt_FromSize_t(ival); #endif } #endif /* Py_PYTHON_H */ pyNFFT-1.3.2/pynfft/util.pyx0000644000175000017500000000562612341611030017664 0ustar gv10-debiangv10-debian00000000000000# -*- coding: utf-8 -*- # # Copyright (C) 2013 Ghislain Vaillant # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program. If not, see . import numpy as np cimport numpy as np from cnfft3util cimport * # Numpy must be initialized. When using numpy from C or Cython you must # _always_ do that, or you will have segfaults np.import_array() def vrand_unit_complex (object[np.complex128_t, mode='c'] x not None): ''' Utilitary function for initializing a vector of knots to random values within the range [-0.5, 0.5). Used for testing :attr:`pynfft.NFFT.x`. :param x: pre-allocated array :type x: ndarray ''' nfft_vrand_unit_complex(&x[0], x.size) def vrand_shifted_unit_double (object[np.float64_t, mode='c'] x not None): ''' Utilitary function for initializing a vector of data to random complex values within the range [0, 1). Used for testing :attr:`pynfft.NFFT.f` and :attr:`pynfft.NFFT.f_hat`. :param x: pre-allocated array :type x: ndarray ''' nfft_vrand_shifted_unit_double(&x[0], x.size) def voronoi_weights_1d (object[np.float64_t, mode='c'] w not None, object[np.float64_t, mode='c'] x not None): ''' Utilitary function for computing density compensation weights from 1D knots. :param w: pre-allocated array :type w: ndarray :param x: ordered 1D knots :type x: ndarray ''' if x.size != w.size: raise ValueError('Incompatible size between weights and nodes \ (%d, %d)'%(w.size, x.size)) nfft_voronoi_weights_1d(&w[0], &x[0], w.size) def voronoi_weights_S2 (object[np.float64_t, mode='c'] w not None, object[np.float64_t, mode='c'] xi not None): ''' Utilitary function for computing density compensation weights from knots located on the surface of a sphere. Useful for reconstruction of 3D radial data. :param w: pre-allocated array :type w: ndarray :param xi: angular locations (2D) on the unit sphere :type xi: ndarray ''' if xi.size != 2 * w.size: raise ValueError('Incompatible size between weights and nodes \ (%d, %d)'%(w.size, xi.size)) nfft_voronoi_weights_S2(&w[0], &xi[0], w.size) pyNFFT-1.3.2/pynfft/cnfft3util.pxd0000644000175000017500000000246112341611030020735 0ustar gv10-debiangv10-debian00000000000000# -*- coding: utf-8 -*- # # Copyright (C) 2013 Ghislain Vaillant # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program. If not, see . from cnfft3 cimport fftw_complex cdef extern from "nfft3util.h": void nfft_vrand_unit_complex (fftw_complex *x, int n) # Inits a vector of random complex numbers in \ # $[0,1]\times[0,1]{\rm i}$ . void nfft_vrand_shifted_unit_double (double *x, int n) # Inits a vector of random double numbers in $[-1/2,1/2]$ . void nfft_voronoi_weights_1d (double *w, double *x, int M) # Computes non periodic voronoi weights, \ # assumes ordered nodes $x_j$. void nfft_voronoi_weights_S2(double *w, double *xi, int M) # Computes voronoi weights for nodes on the sphere S^2. */ pyNFFT-1.3.2/pynfft/version.py0000644000175000017500000000033612366200134020203 0ustar gv10-debiangv10-debian00000000000000 # THIS FILE IS GENERATED FROM SETUP.PY short_version = '1.3.2' version = '1.3.2' full_version = '1.3.2' git_revision = 'c45b7027a79c9633e8ffa84532f4bfa092e510a9' release = True if not release: version = full_version pyNFFT-1.3.2/pynfft/nfft.pyx0000644000175000017500000003262512366173704017665 0ustar gv10-debiangv10-debian00000000000000# -*- coding: utf-8 -*- # # Copyright (C) 2013 Ghislain Vaillant # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program. If not, see . import copy import numpy as np cimport numpy as np from libc.stdlib cimport malloc, free from libc cimport limits from cnfft3 cimport * cdef extern from *: int Py_AtExit(void (*callback)()) # Initialize module # Numpy must be initialized. When using numpy from C or Cython you must # _always_ do that, or you will have segfaults np.import_array() # initialize FFTW threads fftw_init_threads() # register cleanup callbacks cdef void _cleanup(): fftw_cleanup() fftw_cleanup_threads() Py_AtExit(_cleanup) nfft_flags_dict = { 'PRE_PHI_HUT':PRE_PHI_HUT, 'FG_PSI':FG_PSI, 'PRE_LIN_PSI':PRE_LIN_PSI, 'PRE_FG_PSI':PRE_FG_PSI, 'PRE_PSI':PRE_PSI, 'PRE_FULL_PSI':PRE_FULL_PSI, 'MALLOC_X':MALLOC_X, 'MALLOC_F_HAT':MALLOC_F_HAT, 'MALLOC_F':MALLOC_F, 'FFT_OUT_OF_PLACE':FFT_OUT_OF_PLACE, 'FFTW_INIT':FFTW_INIT, 'NFFT_SORT_NODES':NFFT_SORT_NODES, 'NFFT_OMP_BLOCKWISE_ADJOINT':NFFT_OMP_BLOCKWISE_ADJOINT, 'PRE_ONE_PSI':PRE_ONE_PSI, } nfft_flags = copy.copy(nfft_flags_dict) fftw_flags_dict = { 'FFTW_ESTIMATE':FFTW_ESTIMATE, 'FFTW_DESTROY_INPUT':FFTW_DESTROY_INPUT, } fftw_flags = copy.copy(fftw_flags_dict) nfft_supported_flags_tuple = ( 'PRE_PHI_HUT', 'FG_PSI', 'PRE_LIN_PSI', 'PRE_FG_PSI', 'PRE_PSI', 'PRE_FULL_PSI', ) nfft_supported_flags = copy.copy(nfft_supported_flags_tuple) cdef class NFFT(object): ''' NFFT is a class for computing the multivariate Non-uniform Discrete Fourier (NDFT) transform using the NFFT library. The interface is designed to be somewhat pythonic, whilst preserving the workflow of the original C-library. Computation of the NFFT is achieved in 3 steps : instantiation, precomputation and execution. On instantiation, the geometry of the transform is provided. Optional computation parameters may also be defined. Precomputation initializes the internals of the transform prior to execution. First the non-uniform locations must be given to the plan via its :attr:`x` attribute. Computation can then be called with the :meth:`precompute` method. The forward and adjoint NFFT can be eventually performed by calling the :meth:`forward` and :meth:`adjoint` methods respectively. The input/output of the transform can be read/written by access to the :attr:`f` and :attr:`f_hat` attributes. ''' # where the C-related content of the class is being initialized def __cinit__(self, N, M, n=None, m=12, flags=None, *args, **kwargs): # support only double / double complex NFFT # TODO: if support for multiple floating precision lands in the # NFFT library, adapt this section to dynamically figure the # real and complex dtypes dtype_real = np.dtype('float64') dtype_complex = np.dtype('complex128') # sanity checks on geometry parameters try: N = tuple(N) except TypeError: N = (N,) if n is None: n = [2 * Nt for Nt in N] try: n = tuple(n) except TypeError: n = (n,) d = len(N) N_total = np.prod(N) n_total = np.prod(n) if len(n) != d: raise ValueError('n should be of same length as N') # check geometry is compatible with C-class internals int_max = limits.INT_MAX if not all([Nt > 0 for Nt in N]): raise ValueError('N must be strictly positive') if not all([Nt < int_max for Nt in N]): raise ValueError('N exceeds integer limit value') if not N_total < int_max: raise ValueError('product of N exceeds integer limit value') if not all([nt > 0 for nt in n]): raise ValueError('n must be strictly positive') if not all([nt < int_max for nt in n]): raise ValueError('n exceeds integer limit value') if not n_total < int_max: raise ValueError('product of n exceeds integer limit value') if not M > 0: raise ValueError('M must be strictly positive') if not M < int_max: raise ValueError('M exceeds integer limit value') if not m > 0: raise ValueError('m must be strictly positive') if not m < int_max: raise ValueError('m exceeds integer limit value') # safeguard against oversampled gridsize too small for kernel size if not all([nt > m for nt in n]): raise ValueError('n must be higher than m') # convert tuple of litteral precomputation flags to its expected # C-compatible value. Each flag is a power of 2, which allows to compute # this value using BITOR operations. cdef unsigned int _nfft_flags = 0 cdef unsigned int _fftw_flags = 0 flags_used = () # sanity checks on user specified flags if any, # else use default ones: if flags is not None: try: flags = tuple(flags) except: flags = (flags,) finally: for each_flag in flags: if each_flag not in nfft_supported_flags_tuple: raise ValueError('Unsupported flag: %s'%(each_flag)) flags_used += flags else: flags_used += ('PRE_PHI_HUT', 'PRE_PSI',) # set specific flags, for which we don't want the user to have a say # on: # FFTW specific flags flags_used += ('FFTW_INIT', 'FFT_OUT_OF_PLACE', 'FFTW_ESTIMATE', 'FFTW_DESTROY_INPUT',) # memory allocation flags flags_used += ('MALLOC_F', 'MALLOC_F_HAT', 'MALLOC_X') # Parallel computation flag flags_used += ('NFFT_SORT_NODES',) # Parallel computation flag, set only if multivariate transform if d > 1: flags_used += ('NFFT_OMP_BLOCKWISE_ADJOINT',) # Calculate the flag code for the guru interface used for # initialization for each_flag in flags_used: try: _nfft_flags |= nfft_flags_dict[each_flag] except KeyError: try: _fftw_flags |= fftw_flags_dict[each_flag] except KeyError: raise ValueError('Invalid flag: ' + '\'' + each_flag + '\' is not a valid flag.') # initialize plan cdef int *p_N = malloc(sizeof(int) * d) if p_N == NULL: raise MemoryError for t in range(d): p_N[t] = N[t] cdef int *p_n = malloc(sizeof(int) * d) if p_n == NULL: raise MemoryError for t in range(d): p_n[t] = n[t] nfft_init_guru(&self._plan, d, p_N, M, p_n, m, _nfft_flags, _fftw_flags) free(p_N) free(p_n) # create array views cdef np.npy_intp *shape_f_hat shape_f_hat = malloc(d * sizeof(np.npy_intp)) if shape_f_hat == NULL: raise MemoryError for dt in range(d): shape_f_hat[dt] = N[dt] self._f_hat = np.PyArray_SimpleNewFromData(d, shape_f_hat, np.NPY_COMPLEX128, (self._plan.f_hat)) free(shape_f_hat) cdef np.npy_intp shape_f[1] shape_f[0] = M self._f = np.PyArray_SimpleNewFromData(1, shape_f, np.NPY_COMPLEX128, (self._plan.f)) cdef np.npy_intp shape_x[2] shape_x[0] = M shape_x[1] = d self._x = np.PyArray_SimpleNewFromData(2, shape_x, np.NPY_FLOAT64, (self._plan.x)) # initialize class members self._d = d self._M = M self._m = m self._N = N self._n = n self._dtype = dtype_complex self._flags = flags_used # here, just holds the documentation of the class constructor def __init__(self, N, M, n=None, m=12, flags=None, *args, **kwargs): ''' :param N: multi-bandwith. :type N: tuple of int :param M: total number of samples. :type n: int :param n: oversampled multi-bandwith, default to 2 * N. :type n: tuple of int :param m: Cut-off parameter of the window function. :type m: int :param flags: list of precomputation flags, see note below. :type flags: tuple **Precomputation flags** This table lists the supported precomputation flags for the NFFT. +----------------------------+--------------------------------------------------+ | Flag | Description | +============================+==================================================+ | PRE_PHI_HUT | Precompute the roll-off correction coefficients. | +----------------------------+--------------------------------------------------+ | FG_PSI | Convolution uses Fast Gaussian properties. | +----------------------------+--------------------------------------------------+ | PRE_LIN_PSI | Convolution uses a precomputed look-up table. | +----------------------------+--------------------------------------------------+ | PRE_FG_PSI | Precompute Fast Gaussian. | +----------------------------+--------------------------------------------------+ | PRE_PSI | Standard precomputation, uses M*(2m+2)*d values. | +----------------------------+--------------------------------------------------+ | PRE_FULL_PSI | Full precomputation, uses M*(2m+2)^d values. | +----------------------------+--------------------------------------------------+ Default value is ``flags = ('PRE_PHI_HUT', 'PRE_PSI')``. ''' pass def __dealloc__(self): nfft_finalize(&self._plan) def precompute(self): '''Precomputes the NFFT plan internals.''' self._precompute() def trafo(self, use_dft=False): '''Performs the forward NFFT. :param use_dft: whether to use the DFT instead of the fast algorithm. :type use_dft: boolean :returns: the updated f array. :rtype: ndarray ''' if use_dft: self._trafo_direct() else: self._trafo() return self.f def adjoint(self, use_dft=False): '''Performs the adjoint NFFT. :param use_dft: whether to use the DFT instead of the fast algorithm. :type use_dft: boolean :returns: the updated f_hat array. :rtype: ndarray ''' if use_dft: self._adjoint_direct() else: self._adjoint() return self.f_hat cdef void _precompute(self): with nogil: nfft_precompute_one_psi(&self._plan) cdef void _trafo(self): with nogil: nfft_trafo(&self._plan) cdef void _trafo_direct(self): with nogil: nfft_trafo_direct(&self._plan) cdef void _adjoint(self): with nogil: nfft_adjoint(&self._plan) cdef void _adjoint_direct(self): with nogil: nfft_adjoint_direct(&self._plan) property f: '''The vector of non-uniform samples.''' def __get__(self): return self._f def __set__(self, array): self._f.ravel()[:] = array.ravel() property f_hat: '''The vector of Fourier coefficients.''' def __get__(self): return self._f_hat def __set__(self, array): self._f_hat.ravel()[:] = array.ravel() property x: '''The nodes in time/spatial domain.''' def __get__(self): return self._x def __set__(self, array): self._x.ravel()[:] = array.ravel() @property def d(self): '''The dimensionality of the NFFT.''' return self._d @property def m(self): '''The cut-off parameter of the window function.''' return self._m @property def M(self): '''The total number of samples.''' return self._M @property def N_total(self): '''The total number of Fourier coefficients.''' return np.prod(self.N) @property def N(self): '''The multi-bandwith size.''' return self._N @property def n(self): '''The oversampled multi-bandwith size.''' return self._n @property def dtype(self): '''The dtype of the NFFT.''' return self._dtype @property def flags(self): '''The precomputation flags.''' return self._flags pyNFFT-1.3.2/pynfft/nfft.pxd0000644000175000017500000000233212366173704017630 0ustar gv10-debiangv10-debian00000000000000# -*- coding: utf-8 -*- # # Copyright (C) 2013-2014 Ghislain Vaillant # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program. If not, see . from cnfft3 cimport nfft_plan cdef object nfft_flags_dict cdef object fftw_flags_dict cdef object nfft_supported_flags_tuple cdef class NFFT(object): cdef nfft_plan _plan cdef int _d cdef int _M cdef int _m cdef object _N cdef object _n cdef object _dtype cdef object _flags cdef object _f cdef object _f_hat cdef object _x cdef void _precompute(self) cdef void _trafo(self) cdef void _trafo_direct(self) cdef void _adjoint(self) cdef void _adjoint_direct(self) pyNFFT-1.3.2/pynfft/solver.pxd0000644000175000017500000000240112366173704020202 0ustar gv10-debiangv10-debian00000000000000# -*- coding: utf-8 -*- # # Copyright (C) 2013-2014 Ghislain Vaillant # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program. If not, see . import numpy as np cimport numpy as np from libc.stdlib cimport malloc, free from cnfft3 cimport solver_plan_complex from .nfft cimport NFFT cdef object solver_flags_dict cdef class Solver(object): cdef solver_plan_complex _solver_plan cdef NFFT _nfft_plan cdef object _w cdef object _w_hat cdef object _y cdef object _f_hat_iter cdef object _r_iter cdef object _z_hat_iter cdef object _p_hat_iter cdef object _v_iter cdef object _dtype cdef object _flags cdef void _before_loop(self) cdef void _loop_one_step(self) pyNFFT-1.3.2/pynfft/solver.c0000644000175000017500000141734712366173764017663 0ustar gv10-debiangv10-debian00000000000000/* Generated by Cython 0.20.1post0 (Debian 0.20.1+git90-g0e6e38e-1+b1) on Wed Jul 30 14:49:39 2014 */ #define PY_SSIZE_T_CLEAN #ifndef CYTHON_USE_PYLONG_INTERNALS #ifdef PYLONG_BITS_IN_DIGIT #define CYTHON_USE_PYLONG_INTERNALS 0 #else #include "pyconfig.h" #ifdef PYLONG_BITS_IN_DIGIT #define CYTHON_USE_PYLONG_INTERNALS 1 #else #define CYTHON_USE_PYLONG_INTERNALS 0 #endif #endif #endif #include "Python.h" #ifndef Py_PYTHON_H #error Python headers needed to compile C extensions, please install development version of Python. #elif PY_VERSION_HEX < 0x02040000 #error Cython requires Python 2.4+. #else #define CYTHON_ABI "0_20_1post0" #include /* For offsetof */ #ifndef offsetof #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) #endif #if !defined(WIN32) && !defined(MS_WINDOWS) #ifndef __stdcall #define __stdcall #endif #ifndef __cdecl #define __cdecl #endif #ifndef __fastcall #define __fastcall #endif #endif #ifndef DL_IMPORT #define DL_IMPORT(t) t #endif #ifndef DL_EXPORT #define DL_EXPORT(t) t #endif #ifndef PY_LONG_LONG #define PY_LONG_LONG LONG_LONG #endif #ifndef Py_HUGE_VAL #define Py_HUGE_VAL HUGE_VAL #endif #ifdef PYPY_VERSION #define CYTHON_COMPILING_IN_PYPY 1 #define CYTHON_COMPILING_IN_CPYTHON 0 #else #define CYTHON_COMPILING_IN_PYPY 0 #define CYTHON_COMPILING_IN_CPYTHON 1 #endif #if CYTHON_COMPILING_IN_PYPY #define Py_OptimizeFlag 0 #endif #if PY_VERSION_HEX < 0x02050000 typedef int Py_ssize_t; #define PY_SSIZE_T_MAX INT_MAX #define PY_SSIZE_T_MIN INT_MIN #define PY_FORMAT_SIZE_T "" #define CYTHON_FORMAT_SSIZE_T "" #define PyInt_FromSsize_t(z) PyInt_FromLong(z) #define PyInt_AsSsize_t(o) __Pyx_PyInt_As_int(o) #define PyNumber_Index(o) ((PyNumber_Check(o) && !PyFloat_Check(o)) ? PyNumber_Int(o) : \ (PyErr_Format(PyExc_TypeError, \ "expected index value, got %.200s", Py_TYPE(o)->tp_name), \ (PyObject*)0)) #define __Pyx_PyIndex_Check(o) (PyNumber_Check(o) && !PyFloat_Check(o) && \ !PyComplex_Check(o)) #define PyIndex_Check __Pyx_PyIndex_Check #define PyErr_WarnEx(category, message, stacklevel) PyErr_Warn(category, message) #define __PYX_BUILD_PY_SSIZE_T "i" #else #define __PYX_BUILD_PY_SSIZE_T "n" #define CYTHON_FORMAT_SSIZE_T "z" #define __Pyx_PyIndex_Check PyIndex_Check #endif #if PY_VERSION_HEX < 0x02060000 #define Py_REFCNT(ob) (((PyObject*)(ob))->ob_refcnt) #define Py_TYPE(ob) (((PyObject*)(ob))->ob_type) #define Py_SIZE(ob) (((PyVarObject*)(ob))->ob_size) #define PyVarObject_HEAD_INIT(type, size) \ PyObject_HEAD_INIT(type) size, #define PyType_Modified(t) typedef struct { void *buf; PyObject *obj; Py_ssize_t len; Py_ssize_t itemsize; int readonly; int ndim; char *format; Py_ssize_t *shape; Py_ssize_t *strides; Py_ssize_t *suboffsets; void *internal; } Py_buffer; #define PyBUF_SIMPLE 0 #define PyBUF_WRITABLE 0x0001 #define PyBUF_FORMAT 0x0004 #define PyBUF_ND 0x0008 #define PyBUF_STRIDES (0x0010 | PyBUF_ND) #define PyBUF_C_CONTIGUOUS (0x0020 | PyBUF_STRIDES) #define PyBUF_F_CONTIGUOUS (0x0040 | PyBUF_STRIDES) #define PyBUF_ANY_CONTIGUOUS (0x0080 | PyBUF_STRIDES) #define PyBUF_INDIRECT (0x0100 | PyBUF_STRIDES) #define PyBUF_RECORDS (PyBUF_STRIDES | PyBUF_FORMAT | PyBUF_WRITABLE) #define PyBUF_FULL (PyBUF_INDIRECT | PyBUF_FORMAT | PyBUF_WRITABLE) typedef int (*getbufferproc)(PyObject *, Py_buffer *, int); typedef void (*releasebufferproc)(PyObject *, Py_buffer *); #endif #if PY_MAJOR_VERSION < 3 #define __Pyx_BUILTIN_MODULE_NAME "__builtin__" #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \ PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) #define __Pyx_DefaultClassType PyClass_Type #else #define __Pyx_BUILTIN_MODULE_NAME "builtins" #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \ PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) #define __Pyx_DefaultClassType PyType_Type #endif #if PY_VERSION_HEX < 0x02060000 #define PyUnicode_FromString(s) PyUnicode_Decode(s, strlen(s), "UTF-8", "strict") #endif #if PY_MAJOR_VERSION >= 3 #define Py_TPFLAGS_CHECKTYPES 0 #define Py_TPFLAGS_HAVE_INDEX 0 #endif #if (PY_VERSION_HEX < 0x02060000) || (PY_MAJOR_VERSION >= 3) #define Py_TPFLAGS_HAVE_NEWBUFFER 0 #endif #if PY_VERSION_HEX < 0x02060000 #define Py_TPFLAGS_HAVE_VERSION_TAG 0 #endif #if PY_VERSION_HEX < 0x02060000 && !defined(Py_TPFLAGS_IS_ABSTRACT) #define Py_TPFLAGS_IS_ABSTRACT 0 #endif #if PY_VERSION_HEX < 0x030400a1 && !defined(Py_TPFLAGS_HAVE_FINALIZE) #define Py_TPFLAGS_HAVE_FINALIZE 0 #endif #if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND) #define CYTHON_PEP393_ENABLED 1 #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ? \ 0 : _PyUnicode_Ready((PyObject *)(op))) #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u) #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i) #define __Pyx_PyUnicode_KIND(u) PyUnicode_KIND(u) #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u) #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i) #else #define CYTHON_PEP393_ENABLED 0 #define __Pyx_PyUnicode_READY(op) (0) #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u) #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i])) #define __Pyx_PyUnicode_KIND(u) (sizeof(Py_UNICODE)) #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u)) #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i])) #endif #if CYTHON_COMPILING_IN_PYPY #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b) #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b) #else #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b) #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ? \ PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b)) #endif #define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b)) #define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b)) #if PY_MAJOR_VERSION >= 3 #define __Pyx_PyString_Format(a, b) PyUnicode_Format(a, b) #else #define __Pyx_PyString_Format(a, b) PyString_Format(a, b) #endif #if PY_MAJOR_VERSION >= 3 #define PyBaseString_Type PyUnicode_Type #define PyStringObject PyUnicodeObject #define PyString_Type PyUnicode_Type #define PyString_Check PyUnicode_Check #define PyString_CheckExact PyUnicode_CheckExact #endif #if PY_VERSION_HEX < 0x02060000 #define PyBytesObject PyStringObject #define PyBytes_Type PyString_Type #define PyBytes_Check PyString_Check #define PyBytes_CheckExact PyString_CheckExact #define PyBytes_FromString PyString_FromString #define PyBytes_FromStringAndSize PyString_FromStringAndSize #define PyBytes_FromFormat PyString_FromFormat #define PyBytes_DecodeEscape PyString_DecodeEscape #define PyBytes_AsString PyString_AsString #define PyBytes_AsStringAndSize PyString_AsStringAndSize #define PyBytes_Size PyString_Size #define PyBytes_AS_STRING PyString_AS_STRING #define PyBytes_GET_SIZE PyString_GET_SIZE #define PyBytes_Repr PyString_Repr #define PyBytes_Concat PyString_Concat #define PyBytes_ConcatAndDel PyString_ConcatAndDel #endif #if PY_MAJOR_VERSION >= 3 #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj) #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj) #else #define __Pyx_PyBaseString_Check(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj) || \ PyString_Check(obj) || PyUnicode_Check(obj)) #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj)) #endif #if PY_VERSION_HEX < 0x02060000 #define PySet_Check(obj) PyObject_TypeCheck(obj, &PySet_Type) #define PyFrozenSet_Check(obj) PyObject_TypeCheck(obj, &PyFrozenSet_Type) #endif #ifndef PySet_CheckExact #define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type) #endif #define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type) #if PY_MAJOR_VERSION >= 3 #define PyIntObject PyLongObject #define PyInt_Type PyLong_Type #define PyInt_Check(op) PyLong_Check(op) #define PyInt_CheckExact(op) PyLong_CheckExact(op) #define PyInt_FromString PyLong_FromString #define PyInt_FromUnicode PyLong_FromUnicode #define PyInt_FromLong PyLong_FromLong #define PyInt_FromSize_t PyLong_FromSize_t #define PyInt_FromSsize_t PyLong_FromSsize_t #define PyInt_AsLong PyLong_AsLong #define PyInt_AS_LONG PyLong_AS_LONG #define PyInt_AsSsize_t PyLong_AsSsize_t #define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask #define PyNumber_Int PyNumber_Long #endif #if PY_MAJOR_VERSION >= 3 #define PyBoolObject PyLongObject #endif #if PY_VERSION_HEX < 0x030200A4 typedef long Py_hash_t; #define __Pyx_PyInt_FromHash_t PyInt_FromLong #define __Pyx_PyInt_AsHash_t PyInt_AsLong #else #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t #define __Pyx_PyInt_AsHash_t PyInt_AsSsize_t #endif #if (PY_MAJOR_VERSION < 3) || (PY_VERSION_HEX >= 0x03010300) #define __Pyx_PySequence_GetSlice(obj, a, b) PySequence_GetSlice(obj, a, b) #define __Pyx_PySequence_SetSlice(obj, a, b, value) PySequence_SetSlice(obj, a, b, value) #define __Pyx_PySequence_DelSlice(obj, a, b) PySequence_DelSlice(obj, a, b) #else #define __Pyx_PySequence_GetSlice(obj, a, b) (unlikely(!(obj)) ? \ (PyErr_SetString(PyExc_SystemError, "null argument to internal routine"), (PyObject*)0) : \ (likely((obj)->ob_type->tp_as_mapping) ? (PySequence_GetSlice(obj, a, b)) : \ (PyErr_Format(PyExc_TypeError, "'%.200s' object is unsliceable", (obj)->ob_type->tp_name), (PyObject*)0))) #define __Pyx_PySequence_SetSlice(obj, a, b, value) (unlikely(!(obj)) ? \ (PyErr_SetString(PyExc_SystemError, "null argument to internal routine"), -1) : \ (likely((obj)->ob_type->tp_as_mapping) ? (PySequence_SetSlice(obj, a, b, value)) : \ (PyErr_Format(PyExc_TypeError, "'%.200s' object doesn't support slice assignment", (obj)->ob_type->tp_name), -1))) #define __Pyx_PySequence_DelSlice(obj, a, b) (unlikely(!(obj)) ? \ (PyErr_SetString(PyExc_SystemError, "null argument to internal routine"), -1) : \ (likely((obj)->ob_type->tp_as_mapping) ? (PySequence_DelSlice(obj, a, b)) : \ (PyErr_Format(PyExc_TypeError, "'%.200s' object doesn't support slice deletion", (obj)->ob_type->tp_name), -1))) #endif #if PY_MAJOR_VERSION >= 3 #define PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : PyInstanceMethod_New(func)) #endif #if PY_VERSION_HEX < 0x02050000 #define __Pyx_GetAttrString(o,n) PyObject_GetAttrString((o),((char *)(n))) #define __Pyx_SetAttrString(o,n,a) PyObject_SetAttrString((o),((char *)(n)),(a)) #define __Pyx_DelAttrString(o,n) PyObject_DelAttrString((o),((char *)(n))) #else #define __Pyx_GetAttrString(o,n) PyObject_GetAttrString((o),(n)) #define __Pyx_SetAttrString(o,n,a) PyObject_SetAttrString((o),(n),(a)) #define __Pyx_DelAttrString(o,n) PyObject_DelAttrString((o),(n)) #endif #if PY_VERSION_HEX < 0x02050000 #define __Pyx_NAMESTR(n) ((char *)(n)) #define __Pyx_DOCSTR(n) ((char *)(n)) #else #define __Pyx_NAMESTR(n) (n) #define __Pyx_DOCSTR(n) (n) #endif #ifndef CYTHON_INLINE #if defined(__GNUC__) #define CYTHON_INLINE __inline__ #elif defined(_MSC_VER) #define CYTHON_INLINE __inline #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L #define CYTHON_INLINE inline #else #define CYTHON_INLINE #endif #endif #ifndef CYTHON_RESTRICT #if defined(__GNUC__) #define CYTHON_RESTRICT __restrict__ #elif defined(_MSC_VER) && _MSC_VER >= 1400 #define CYTHON_RESTRICT __restrict #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L #define CYTHON_RESTRICT restrict #else #define CYTHON_RESTRICT #endif #endif #ifdef NAN #define __PYX_NAN() ((float) NAN) #else static CYTHON_INLINE float __PYX_NAN() { /* Initialize NaN. The sign is irrelevant, an exponent with all bits 1 and a nonzero mantissa means NaN. If the first bit in the mantissa is 1, it is a quiet NaN. */ float value; memset(&value, 0xFF, sizeof(value)); return value; } #endif #ifdef __cplusplus template void __Pyx_call_destructor(T* x) { x->~T(); } #endif #if PY_MAJOR_VERSION >= 3 #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) #else #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y) #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y) #endif #ifndef __PYX_EXTERN_C #ifdef __cplusplus #define __PYX_EXTERN_C extern "C" #else #define __PYX_EXTERN_C extern #endif #endif #if defined(WIN32) || defined(MS_WINDOWS) #define _USE_MATH_DEFINES #endif #include #define __PYX_HAVE__pynfft__solver #define __PYX_HAVE_API__pynfft__solver #include "string.h" #include "stdio.h" #include "stdlib.h" #include "numpy/arrayobject.h" #include "numpy/ufuncobject.h" #include "nfft3.h" #include "fftw3.h" #ifdef _OPENMP #include #endif /* _OPENMP */ #ifdef PYREX_WITHOUT_ASSERTIONS #define CYTHON_WITHOUT_ASSERTIONS #endif #ifndef CYTHON_UNUSED # if defined(__GNUC__) # if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) # define CYTHON_UNUSED __attribute__ ((__unused__)) # else # define CYTHON_UNUSED # endif # elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) # define CYTHON_UNUSED __attribute__ ((__unused__)) # else # define CYTHON_UNUSED # endif #endif typedef struct {PyObject **p; char *s; const Py_ssize_t n; const char* encoding; const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; /*proto*/ #define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0 #define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT 0 #define __PYX_DEFAULT_STRING_ENCODING "" #define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString #define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize #define __Pyx_fits_Py_ssize_t(v, type, is_signed) ( \ (sizeof(type) < sizeof(Py_ssize_t)) || \ (sizeof(type) > sizeof(Py_ssize_t) && \ likely(v < (type)PY_SSIZE_T_MAX || \ v == (type)PY_SSIZE_T_MAX) && \ (!is_signed || likely(v > (type)PY_SSIZE_T_MIN || \ v == (type)PY_SSIZE_T_MIN))) || \ (sizeof(type) == sizeof(Py_ssize_t) && \ (is_signed || likely(v < (type)PY_SSIZE_T_MAX || \ v == (type)PY_SSIZE_T_MAX))) ) static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject*); static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); #define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s)) #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) #define __Pyx_PyBytes_FromString PyBytes_FromString #define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); #if PY_MAJOR_VERSION < 3 #define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize #else #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize #endif #define __Pyx_PyObject_AsSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_AsUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_FromUString(s) __Pyx_PyObject_FromString((const char*)s) #define __Pyx_PyBytes_FromUString(s) __Pyx_PyBytes_FromString((const char*)s) #define __Pyx_PyByteArray_FromUString(s) __Pyx_PyByteArray_FromString((const char*)s) #define __Pyx_PyStr_FromUString(s) __Pyx_PyStr_FromString((const char*)s) #define __Pyx_PyUnicode_FromUString(s) __Pyx_PyUnicode_FromString((const char*)s) #if PY_MAJOR_VERSION < 3 static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) { const Py_UNICODE *u_end = u; while (*u_end++) ; return u_end - u - 1; } #else #define __Pyx_Py_UNICODE_strlen Py_UNICODE_strlen #endif #define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u)) #define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode #define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode #define __Pyx_Owned_Py_None(b) (Py_INCREF(Py_None), Py_None) #define __Pyx_PyBool_FromLong(b) ((b) ? (Py_INCREF(Py_True), Py_True) : (Py_INCREF(Py_False), Py_False)) static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*); static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x); static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*); static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t); #if CYTHON_COMPILING_IN_CPYTHON #define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x)) #else #define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x) #endif #define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x)) #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII static int __Pyx_sys_getdefaultencoding_not_ascii; static int __Pyx_init_sys_getdefaultencoding_params(void) { PyObject* sys = NULL; PyObject* default_encoding = NULL; PyObject* ascii_chars_u = NULL; PyObject* ascii_chars_b = NULL; sys = PyImport_ImportModule("sys"); if (sys == NULL) goto bad; default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); if (default_encoding == NULL) goto bad; if (strcmp(PyBytes_AsString(default_encoding), "ascii") == 0) { __Pyx_sys_getdefaultencoding_not_ascii = 0; } else { const char* default_encoding_c = PyBytes_AS_STRING(default_encoding); char ascii_chars[128]; int c; for (c = 0; c < 128; c++) { ascii_chars[c] = c; } __Pyx_sys_getdefaultencoding_not_ascii = 1; ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL); if (ascii_chars_u == NULL) goto bad; ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL); if (ascii_chars_b == NULL || strncmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) { PyErr_Format( PyExc_ValueError, "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.", default_encoding_c); goto bad; } } Py_XDECREF(sys); Py_XDECREF(default_encoding); Py_XDECREF(ascii_chars_u); Py_XDECREF(ascii_chars_b); return 0; bad: Py_XDECREF(sys); Py_XDECREF(default_encoding); Py_XDECREF(ascii_chars_u); Py_XDECREF(ascii_chars_b); return -1; } #endif #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3 #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL) #else #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL) #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT static char* __PYX_DEFAULT_STRING_ENCODING; static int __Pyx_init_sys_getdefaultencoding_params(void) { PyObject* sys = NULL; PyObject* default_encoding = NULL; char* default_encoding_c; sys = PyImport_ImportModule("sys"); if (sys == NULL) goto bad; default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); if (default_encoding == NULL) goto bad; default_encoding_c = PyBytes_AS_STRING(default_encoding); __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c)); strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c); Py_DECREF(sys); Py_DECREF(default_encoding); return 0; bad: Py_XDECREF(sys); Py_XDECREF(default_encoding); return -1; } #endif #endif /* Test for GCC > 2.95 */ #if defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95))) #define likely(x) __builtin_expect(!!(x), 1) #define unlikely(x) __builtin_expect(!!(x), 0) #else /* !__GNUC__ or GCC < 2.95 */ #define likely(x) (x) #define unlikely(x) (x) #endif /* __GNUC__ */ static PyObject *__pyx_m; 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/* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":731 * * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<< * ctypedef npy_uint32 uint32_t * ctypedef npy_uint64 uint64_t */ typedef npy_uint16 __pyx_t_5numpy_uint16_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":732 * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<< * ctypedef npy_uint64 uint64_t * #ctypedef npy_uint96 uint96_t */ typedef npy_uint32 __pyx_t_5numpy_uint32_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":733 * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<< * #ctypedef npy_uint96 uint96_t * #ctypedef npy_uint128 uint128_t */ typedef npy_uint64 __pyx_t_5numpy_uint64_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":737 * #ctypedef npy_uint128 uint128_t * * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<< * ctypedef npy_float64 float64_t * #ctypedef npy_float80 float80_t */ typedef npy_float32 __pyx_t_5numpy_float32_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":738 * * ctypedef npy_float32 float32_t * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<< * #ctypedef npy_float80 float80_t * #ctypedef npy_float128 float128_t */ typedef npy_float64 __pyx_t_5numpy_float64_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":747 * # The int types are mapped a bit surprising -- * # numpy.int corresponds to 'l' and numpy.long to 'q' * ctypedef npy_long int_t # <<<<<<<<<<<<<< * ctypedef npy_longlong long_t * ctypedef npy_longlong longlong_t */ typedef npy_long __pyx_t_5numpy_int_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":748 * # numpy.int corresponds to 'l' and numpy.long to 'q' * ctypedef npy_long int_t * ctypedef npy_longlong long_t # <<<<<<<<<<<<<< * ctypedef npy_longlong longlong_t * */ typedef npy_longlong __pyx_t_5numpy_long_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":749 * ctypedef npy_long int_t * ctypedef npy_longlong long_t * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<< * * ctypedef npy_ulong uint_t */ typedef npy_longlong __pyx_t_5numpy_longlong_t; 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/* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":764 * ctypedef npy_cfloat cfloat_t * ctypedef npy_cdouble cdouble_t * ctypedef npy_clongdouble clongdouble_t # <<<<<<<<<<<<<< * * ctypedef npy_cdouble complex_t */ typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":766 * ctypedef npy_clongdouble clongdouble_t * * ctypedef npy_cdouble complex_t # <<<<<<<<<<<<<< * * cdef inline object PyArray_MultiIterNew1(a): */ typedef npy_cdouble __pyx_t_5numpy_complex_t; /* "nfft.pxd":24 * cdef object nfft_supported_flags_tuple * * cdef class NFFT(object): # <<<<<<<<<<<<<< * cdef nfft_plan _plan * cdef int _d */ struct __pyx_obj_6pynfft_4nfft_NFFT { PyObject_HEAD struct __pyx_vtabstruct_6pynfft_4nfft_NFFT *__pyx_vtab; nfft_plan _plan; int _d; int _M; int _m; PyObject *_N; PyObject *_n; PyObject *_dtype; PyObject *_flags; PyObject *_f; PyObject *_f_hat; PyObject *_x; }; /* "pynfft/solver.pxd":26 * cdef object solver_flags_dict * * cdef class Solver(object): # <<<<<<<<<<<<<< * cdef solver_plan_complex _solver_plan * cdef NFFT _nfft_plan */ struct __pyx_obj_6pynfft_6solver_Solver { PyObject_HEAD struct __pyx_vtabstruct_6pynfft_6solver_Solver *__pyx_vtab; 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/*proto*/ static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name); /*proto*/ static PyObject *__Pyx_GetNameInClass(PyObject *nmspace, PyObject *name); /*proto*/ static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); /*proto*/ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value); static CYTHON_INLINE Py_intptr_t __Pyx_PyInt_As_Py_intptr_t(PyObject *); static CYTHON_INLINE size_t __Pyx_PyInt_As_size_t(PyObject *); static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); #ifndef __PYX_FORCE_INIT_THREADS #define __PYX_FORCE_INIT_THREADS 0 #endif static CYTHON_INLINE PyObject* __Pyx_PyInt_From_unsigned_int(unsigned int value); static CYTHON_INLINE unsigned int __Pyx_PyInt_As_unsigned_int(PyObject *); #if CYTHON_CCOMPLEX #ifdef __cplusplus #define __Pyx_CREAL(z) ((z).real()) #define __Pyx_CIMAG(z) ((z).imag()) #else #define __Pyx_CREAL(z) (__real__(z)) #define __Pyx_CIMAG(z) (__imag__(z)) #endif #else #define __Pyx_CREAL(z) ((z).real) #define __Pyx_CIMAG(z) ((z).imag) #endif #if (defined(_WIN32) || defined(__clang__)) && defined(__cplusplus) && CYTHON_CCOMPLEX #define __Pyx_SET_CREAL(z,x) ((z).real(x)) #define __Pyx_SET_CIMAG(z,y) ((z).imag(y)) #else #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x) #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y) #endif static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float, float); #if CYTHON_CCOMPLEX #define __Pyx_c_eqf(a, b) ((a)==(b)) #define __Pyx_c_sumf(a, b) ((a)+(b)) #define __Pyx_c_difff(a, b) ((a)-(b)) #define __Pyx_c_prodf(a, b) ((a)*(b)) #define __Pyx_c_quotf(a, b) ((a)/(b)) #define __Pyx_c_negf(a) (-(a)) #ifdef __cplusplus #define __Pyx_c_is_zerof(z) ((z)==(float)0) #define __Pyx_c_conjf(z) (::std::conj(z)) #if 1 #define __Pyx_c_absf(z) (::std::abs(z)) #define __Pyx_c_powf(a, b) (::std::pow(a, b)) #endif #else #define __Pyx_c_is_zerof(z) ((z)==0) #define __Pyx_c_conjf(z) (conjf(z)) #if 1 #define __Pyx_c_absf(z) (cabsf(z)) #define __Pyx_c_powf(a, b) (cpowf(a, b)) #endif #endif #else static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex); static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex); #if 1 static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex, __pyx_t_float_complex); #endif #endif static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double, double); #if CYTHON_CCOMPLEX #define __Pyx_c_eq(a, b) ((a)==(b)) #define __Pyx_c_sum(a, b) ((a)+(b)) #define __Pyx_c_diff(a, b) ((a)-(b)) #define __Pyx_c_prod(a, b) ((a)*(b)) #define __Pyx_c_quot(a, b) ((a)/(b)) #define __Pyx_c_neg(a) (-(a)) #ifdef __cplusplus #define __Pyx_c_is_zero(z) ((z)==(double)0) #define __Pyx_c_conj(z) (::std::conj(z)) #if 1 #define __Pyx_c_abs(z) (::std::abs(z)) #define __Pyx_c_pow(a, b) (::std::pow(a, b)) #endif #else #define __Pyx_c_is_zero(z) ((z)==0) #define __Pyx_c_conj(z) (conj(z)) #if 1 #define __Pyx_c_abs(z) (cabs(z)) #define __Pyx_c_pow(a, b) (cpow(a, b)) #endif #endif #else static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex); static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex); #if 1 static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex, __pyx_t_double_complex); #endif #endif static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); static int __Pyx_check_binary_version(void); #if CYTHON_COMPILING_IN_CPYTHON #define __Pyx_PyObject_DelAttrStr(o,n) __Pyx_PyObject_SetAttrStr(o,n,NULL) static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value) { PyTypeObject* tp = Py_TYPE(obj); if (likely(tp->tp_setattro)) return tp->tp_setattro(obj, attr_name, value); #if PY_MAJOR_VERSION < 3 if (likely(tp->tp_setattr)) return tp->tp_setattr(obj, PyString_AS_STRING(attr_name), value); #endif return PyObject_SetAttr(obj, attr_name, value); } #else #define __Pyx_PyObject_DelAttrStr(o,n) PyObject_DelAttr(o,n) #define __Pyx_PyObject_SetAttrStr(o,n,v) PyObject_SetAttr(o,n,v) #endif static int __Pyx_ExportVoidPtr(PyObject *name, void *p, const char *sig); /*proto*/ #if !defined(__Pyx_PyIdentifier_FromString) #if PY_MAJOR_VERSION < 3 #define __Pyx_PyIdentifier_FromString(s) PyString_FromString(s) #else #define __Pyx_PyIdentifier_FromString(s) PyUnicode_FromString(s) #endif #endif static PyObject *__Pyx_ImportModule(const char *name); /*proto*/ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict); /*proto*/ static int __Pyx_ImportVoidPtr(PyObject *module, const char *name, void **p, const char *sig); /*proto*/ typedef struct { int code_line; PyCodeObject* code_object; } __Pyx_CodeObjectCacheEntry; struct __Pyx_CodeObjectCache { int count; int max_count; __Pyx_CodeObjectCacheEntry* entries; }; static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL}; static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line); static PyCodeObject *__pyx_find_code_object(int code_line); static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object); static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename); /*proto*/ static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); /*proto*/ /* Module declarations from 'cpython.buffer' */ /* Module declarations from 'cpython.ref' */ /* Module declarations from 'libc.string' */ /* Module declarations from 'libc.stdio' */ /* Module declarations from 'cpython.object' */ /* Module declarations from '__builtin__' */ /* Module declarations from 'cpython.type' */ static PyTypeObject *__pyx_ptype_7cpython_4type_type = 0; /* Module declarations from 'libc.stdlib' */ /* Module declarations from 'numpy' */ /* Module declarations from 'numpy' */ static PyTypeObject *__pyx_ptype_5numpy_dtype = 0; static PyTypeObject *__pyx_ptype_5numpy_flatiter = 0; static PyTypeObject *__pyx_ptype_5numpy_broadcast = 0; static PyTypeObject *__pyx_ptype_5numpy_ndarray = 0; static PyTypeObject *__pyx_ptype_5numpy_ufunc = 0; static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, char *, char *, int *); /*proto*/ /* Module declarations from 'pynfft.cnfft3' */ /* Module declarations from 'pynfft.nfft' */ static PyTypeObject *__pyx_ptype_6pynfft_4nfft_NFFT = 0; static PyObject **__pyx_vp_6pynfft_4nfft_nfft_flags_dict = 0; #define __pyx_v_6pynfft_4nfft_nfft_flags_dict (*__pyx_vp_6pynfft_4nfft_nfft_flags_dict) static PyObject **__pyx_vp_6pynfft_4nfft_fftw_flags_dict = 0; #define __pyx_v_6pynfft_4nfft_fftw_flags_dict (*__pyx_vp_6pynfft_4nfft_fftw_flags_dict) static PyObject **__pyx_vp_6pynfft_4nfft_nfft_supported_flags_tuple = 0; #define __pyx_v_6pynfft_4nfft_nfft_supported_flags_tuple (*__pyx_vp_6pynfft_4nfft_nfft_supported_flags_tuple) /* Module declarations from 'pynfft.solver' */ static PyTypeObject *__pyx_ptype_6pynfft_6solver_Solver = 0; static PyObject *__pyx_v_6pynfft_6solver_solver_flags_dict = 0; #define __Pyx_MODULE_NAME "pynfft.solver" int __pyx_module_is_main_pynfft__solver = 0; /* Implementation of 'pynfft.solver' */ static PyObject *__pyx_builtin_property; static PyObject *__pyx_builtin_KeyError; static PyObject *__pyx_builtin_ValueError; static PyObject *__pyx_builtin_MemoryError; static PyObject *__pyx_builtin_range; static PyObject *__pyx_builtin_RuntimeError; static int __pyx_pf_6pynfft_6solver_6Solver___cinit__(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self, struct __pyx_obj_6pynfft_4nfft_NFFT *__pyx_v_nfft_plan, PyObject *__pyx_v_flags); /* proto */ static int __pyx_pf_6pynfft_6solver_6Solver_2__init__(CYTHON_UNUSED struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_nfft_plan, CYTHON_UNUSED PyObject *__pyx_v_flags); /* proto */ static void __pyx_pf_6pynfft_6solver_6Solver_4__dealloc__(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_6solver_6Solver_6before_loop(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_6solver_6Solver_8loop_one_step(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_6solver_6Solver_1w___get__(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self); /* proto */ static int __pyx_pf_6pynfft_6solver_6Solver_1w_2__set__(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self, PyObject *__pyx_v_array); /* proto */ static PyObject *__pyx_pf_6pynfft_6solver_6Solver_5w_hat___get__(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self); /* proto */ static int __pyx_pf_6pynfft_6solver_6Solver_5w_hat_2__set__(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self, PyObject *__pyx_v_array); /* proto */ static PyObject *__pyx_pf_6pynfft_6solver_6Solver_1y___get__(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self); /* proto */ static int __pyx_pf_6pynfft_6solver_6Solver_1y_2__set__(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self, PyObject *__pyx_v_array); /* proto */ static PyObject *__pyx_pf_6pynfft_6solver_6Solver_10f_hat_iter___get__(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self); /* proto */ static int __pyx_pf_6pynfft_6solver_6Solver_10f_hat_iter_2__set__(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self, PyObject *__pyx_v_array); /* proto */ static PyObject *__pyx_pf_6pynfft_6solver_6Solver_10r_iter(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_6solver_6Solver_12z_hat_iter(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_6solver_6Solver_14p_hat_iter(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_6solver_6Solver_16v_iter(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_6solver_6Solver_18alpha_iter(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_6solver_6Solver_20beta_iter(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_6solver_6Solver_22dot_r_iter(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_6solver_6Solver_24dot_r_iter_old(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_6solver_6Solver_26dot_z_hat_iter(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_6solver_6Solver_28dot_z_hat_iter_old(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_6solver_6Solver_30dot_p_hat_iter(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_6solver_6Solver_32dot_v_iter(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_6solver_6Solver_34dtype(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_6solver_6Solver_36flags(struct __pyx_obj_6pynfft_6solver_Solver *__pyx_v_self); /* proto */ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ static PyObject *__pyx_tp_new_6pynfft_6solver_Solver(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static char __pyx_k_B[] = "B"; static char __pyx_k_H[] = "H"; static char __pyx_k_I[] = "I"; static char __pyx_k_L[] = "L"; static char __pyx_k_M[] = "M"; static char __pyx_k_N[] = "N"; static char __pyx_k_O[] = "O"; static char __pyx_k_Q[] = "Q"; static char __pyx_k_b[] = "b"; static char __pyx_k_d[] = "d"; static char __pyx_k_f[] = "f"; static char __pyx_k_g[] = "g"; static char __pyx_k_h[] = "h"; static char __pyx_k_i[] = "i"; static char __pyx_k_l[] = "l"; static char __pyx_k_q[] = "q"; static char __pyx_k_Zd[] = "Zd"; static char __pyx_k_Zf[] = "Zf"; static char __pyx_k_Zg[] = "Zg"; static char __pyx_k__5[] = "'"; static char __pyx_k_np[] = "np"; static char __pyx_k_CGNE[] = "CGNE"; static char __pyx_k_CGNR[] = "CGNR"; static char __pyx_k_NFFT[] = "NFFT"; static char __pyx_k_copy[] = "copy"; static char __pyx_k_main[] = "__main__"; static char __pyx_k_nfft[] = "nfft"; static char __pyx_k_test[] = "__test__"; static char __pyx_k_dtype[] = "dtype"; static char __pyx_k_flags[] = "flags"; static char __pyx_k_numpy[] = "numpy"; static char __pyx_k_range[] = "range"; static char __pyx_k_ravel[] = "ravel"; static char __pyx_k_import[] = "__import__"; static char __pyx_k_r_iter[] = "r_iter"; static char __pyx_k_v_iter[] = "v_iter"; static char __pyx_k_float64[] = "float64"; static char __pyx_k_KeyError[] = "KeyError"; static char __pyx_k_property[] = "property"; static char __pyx_k_pyx_capi[] = "__pyx_capi__"; static char __pyx_k_LANDWEBER[] = "LANDWEBER"; static char __pyx_k_beta_iter[] = "beta_iter"; static char __pyx_k_nfft_plan[] = "nfft_plan"; static char __pyx_k_ValueError[] = "ValueError"; static char __pyx_k_alpha_iter[] = "alpha_iter"; static char __pyx_k_complex128[] = "complex128"; static char __pyx_k_dot_r_iter[] = "dot_r_iter"; static char __pyx_k_dot_v_iter[] = "dot_v_iter"; static char __pyx_k_p_hat_iter[] = "p_hat_iter"; static char __pyx_k_pyx_vtable[] = "__pyx_vtable__"; static char __pyx_k_z_hat_iter[] = "z_hat_iter"; static char __pyx_k_MemoryError[] = "MemoryError"; static char __pyx_k_Invalid_flag[] = "Invalid flag: "; static char __pyx_k_RuntimeError[] = "RuntimeError"; static char __pyx_k_solver_flags[] = "solver_flags"; static char __pyx_k_dot_p_hat_iter[] = "dot_p_hat_iter"; static char __pyx_k_dot_r_iter_old[] = "dot_r_iter_old"; static char __pyx_k_dot_z_hat_iter[] = "dot_z_hat_iter"; static char __pyx_k_Damping_factors[] = "Damping factors."; static char __pyx_k_PRECOMPUTE_DAMP[] = "PRECOMPUTE_DAMP"; static char __pyx_k_STEEPEST_DESCENT[] = "STEEPEST_DESCENT"; static char __pyx_k_PRECOMPUTE_WEIGHT[] = "PRECOMPUTE_WEIGHT"; static char __pyx_k_Weighting_factors[] = "Weighting factors."; static char __pyx_k_solver_flags_dict[] = "solver_flags_dict"; static char __pyx_k_Iterative_solution[] = "Iterative solution."; static char __pyx_k_dot_z_hat_iter_old[] = "dot_z_hat_iter_old"; static char __pyx_k_NORMS_FOR_LANDWEBER[] = "NORMS_FOR_LANDWEBER"; static char __pyx_k_is_not_a_valid_flag[] = "' is not a valid flag."; static char __pyx_k_Right_hand_side_samples[] = "Right hand side, samples."; static char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous"; static char __pyx_k_unknown_dtype_code_in_numpy_pxd[] = "unknown dtype code in numpy.pxd (%d)"; static char __pyx_k_Format_string_allocated_too_shor[] = "Format string allocated too short, see comment in numpy.pxd"; static char __pyx_k_Non_native_byte_order_not_suppor[] = "Non-native byte order not supported"; static char __pyx_k_ndarray_is_not_Fortran_contiguou[] = "ndarray is not Fortran contiguous"; static char __pyx_k_Format_string_allocated_too_shor_2[] = "Format string allocated too short."; static PyObject *__pyx_n_s_CGNE; static PyObject *__pyx_n_s_CGNR; static PyObject *__pyx_kp_u_Format_string_allocated_too_shor; static PyObject *__pyx_kp_u_Format_string_allocated_too_shor_2; static PyObject *__pyx_kp_s_Invalid_flag; static PyObject *__pyx_n_s_KeyError; static PyObject *__pyx_n_s_LANDWEBER; static PyObject *__pyx_n_s_M; static PyObject *__pyx_n_s_MemoryError; static PyObject *__pyx_n_s_N; static PyObject *__pyx_n_s_NFFT; static PyObject *__pyx_n_s_NORMS_FOR_LANDWEBER; static PyObject *__pyx_kp_u_Non_native_byte_order_not_suppor; static PyObject *__pyx_n_s_PRECOMPUTE_DAMP; static PyObject *__pyx_n_s_PRECOMPUTE_WEIGHT; static PyObject *__pyx_n_s_RuntimeError; static PyObject *__pyx_n_s_STEEPEST_DESCENT; static PyObject *__pyx_n_s_ValueError; static PyObject *__pyx_kp_s__5; static PyObject *__pyx_n_s_alpha_iter; static PyObject *__pyx_n_s_beta_iter; static PyObject *__pyx_n_s_complex128; static PyObject *__pyx_n_s_copy; static PyObject *__pyx_n_s_d; static PyObject *__pyx_n_s_dot_p_hat_iter; static PyObject *__pyx_n_s_dot_r_iter; static PyObject *__pyx_n_s_dot_r_iter_old; static PyObject *__pyx_n_s_dot_v_iter; static PyObject *__pyx_n_s_dot_z_hat_iter; static PyObject *__pyx_n_s_dot_z_hat_iter_old; static PyObject *__pyx_n_s_dtype; static PyObject *__pyx_n_s_flags; static PyObject *__pyx_n_s_float64; static PyObject *__pyx_n_s_import; static PyObject *__pyx_kp_s_is_not_a_valid_flag; static PyObject *__pyx_n_s_main; static PyObject *__pyx_kp_u_ndarray_is_not_C_contiguous; static PyObject *__pyx_kp_u_ndarray_is_not_Fortran_contiguou; static PyObject *__pyx_n_s_nfft; static PyObject *__pyx_n_s_nfft_plan; static PyObject *__pyx_n_s_np; static PyObject *__pyx_n_s_numpy; static PyObject *__pyx_n_s_p_hat_iter; static PyObject *__pyx_n_s_property; static PyObject *__pyx_n_s_pyx_capi; static PyObject *__pyx_n_s_pyx_vtable; static PyObject *__pyx_n_s_r_iter; static PyObject *__pyx_n_s_range; static PyObject *__pyx_n_s_ravel; static PyObject *__pyx_n_s_solver_flags; static PyObject *__pyx_n_s_solver_flags_dict; static PyObject *__pyx_n_s_test; static PyObject *__pyx_kp_u_unknown_dtype_code_in_numpy_pxd; static PyObject *__pyx_n_s_v_iter; static PyObject *__pyx_n_s_z_hat_iter; static PyObject *__pyx_int_0; static PyObject *__pyx_int_1; static PyObject *__pyx_tuple_; static PyObject *__pyx_slice__6; static PyObject *__pyx_slice__7; static PyObject *__pyx_slice__8; static PyObject *__pyx_slice__9; static PyObject *__pyx_tuple__2; static PyObject *__pyx_tuple__3; static PyObject *__pyx_tuple__4; static PyObject *__pyx_slice__10; static PyObject *__pyx_slice__11; static PyObject *__pyx_slice__12; static PyObject *__pyx_tuple__13; static PyObject *__pyx_tuple__14; static PyObject *__pyx_tuple__15; static PyObject *__pyx_tuple__16; static PyObject *__pyx_tuple__17; static PyObject *__pyx_tuple__18; /* "pynfft/solver.pyx":65 * ''' * * def __cinit__(self, NFFT nfft_plan, flags=None): # <<<<<<<<<<<<<< * * # support only double / double complex NFFT */ /* Python wrapper */ static int __pyx_pw_6pynfft_6solver_6Solver_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); 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} if (p->_y) { e = (*v)(p->_y, a); if (e) return e; } if (p->_f_hat_iter) { e = (*v)(p->_f_hat_iter, a); if (e) return e; } if (p->_r_iter) { e = (*v)(p->_r_iter, a); if (e) return e; } if (p->_z_hat_iter) { e = (*v)(p->_z_hat_iter, a); if (e) return e; } if (p->_p_hat_iter) { e = (*v)(p->_p_hat_iter, a); if (e) return e; } if (p->_v_iter) { e = (*v)(p->_v_iter, a); if (e) return e; } if (p->_dtype) { e = (*v)(p->_dtype, a); if (e) return e; } if (p->_flags) { e = (*v)(p->_flags, a); if (e) return e; } return 0; } static int __pyx_tp_clear_6pynfft_6solver_Solver(PyObject *o) { PyObject* tmp; struct __pyx_obj_6pynfft_6solver_Solver *p = (struct __pyx_obj_6pynfft_6solver_Solver *)o; tmp = ((PyObject*)p->_nfft_plan); p->_nfft_plan = ((struct __pyx_obj_6pynfft_4nfft_NFFT *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); tmp = ((PyObject*)p->_w); p->_w = Py_None; Py_INCREF(Py_None); Py_XDECREF(tmp); tmp = ((PyObject*)p->_w_hat); p->_w_hat = Py_None; Py_INCREF(Py_None); Py_XDECREF(tmp); tmp = ((PyObject*)p->_y); p->_y = Py_None; Py_INCREF(Py_None); Py_XDECREF(tmp); tmp = ((PyObject*)p->_f_hat_iter); p->_f_hat_iter = Py_None; Py_INCREF(Py_None); Py_XDECREF(tmp); tmp = ((PyObject*)p->_r_iter); p->_r_iter = Py_None; Py_INCREF(Py_None); Py_XDECREF(tmp); tmp = ((PyObject*)p->_z_hat_iter); p->_z_hat_iter = Py_None; Py_INCREF(Py_None); Py_XDECREF(tmp); tmp = ((PyObject*)p->_p_hat_iter); p->_p_hat_iter = Py_None; Py_INCREF(Py_None); Py_XDECREF(tmp); tmp = ((PyObject*)p->_v_iter); p->_v_iter = Py_None; Py_INCREF(Py_None); Py_XDECREF(tmp); tmp = ((PyObject*)p->_dtype); p->_dtype = Py_None; Py_INCREF(Py_None); Py_XDECREF(tmp); tmp = ((PyObject*)p->_flags); p->_flags = Py_None; Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_getprop_6pynfft_6solver_6Solver_w(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_6pynfft_6solver_6Solver_1w_1__get__(o); } static int __pyx_setprop_6pynfft_6solver_6Solver_w(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_6pynfft_6solver_6Solver_1w_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_6pynfft_6solver_6Solver_w_hat(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_6pynfft_6solver_6Solver_5w_hat_1__get__(o); } static int __pyx_setprop_6pynfft_6solver_6Solver_w_hat(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_6pynfft_6solver_6Solver_5w_hat_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_6pynfft_6solver_6Solver_y(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_6pynfft_6solver_6Solver_1y_1__get__(o); } static int __pyx_setprop_6pynfft_6solver_6Solver_y(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_6pynfft_6solver_6Solver_1y_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_6pynfft_6solver_6Solver_f_hat_iter(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_6pynfft_6solver_6Solver_10f_hat_iter_1__get__(o); } static int __pyx_setprop_6pynfft_6solver_6Solver_f_hat_iter(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_6pynfft_6solver_6Solver_10f_hat_iter_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyMethodDef __pyx_methods_6pynfft_6solver_Solver[] = { {__Pyx_NAMESTR("before_loop"), (PyCFunction)__pyx_pw_6pynfft_6solver_6Solver_7before_loop, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_6pynfft_6solver_6Solver_6before_loop)}, {__Pyx_NAMESTR("loop_one_step"), (PyCFunction)__pyx_pw_6pynfft_6solver_6Solver_9loop_one_step, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_6pynfft_6solver_6Solver_8loop_one_step)}, {__Pyx_NAMESTR("r_iter"), (PyCFunction)__pyx_pw_6pynfft_6solver_6Solver_11r_iter, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_6pynfft_6solver_6Solver_10r_iter)}, {__Pyx_NAMESTR("z_hat_iter"), (PyCFunction)__pyx_pw_6pynfft_6solver_6Solver_13z_hat_iter, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_6pynfft_6solver_6Solver_12z_hat_iter)}, {__Pyx_NAMESTR("p_hat_iter"), (PyCFunction)__pyx_pw_6pynfft_6solver_6Solver_15p_hat_iter, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_6pynfft_6solver_6Solver_14p_hat_iter)}, {__Pyx_NAMESTR("v_iter"), (PyCFunction)__pyx_pw_6pynfft_6solver_6Solver_17v_iter, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_6pynfft_6solver_6Solver_16v_iter)}, {__Pyx_NAMESTR("alpha_iter"), (PyCFunction)__pyx_pw_6pynfft_6solver_6Solver_19alpha_iter, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_6pynfft_6solver_6Solver_18alpha_iter)}, {__Pyx_NAMESTR("beta_iter"), (PyCFunction)__pyx_pw_6pynfft_6solver_6Solver_21beta_iter, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_6pynfft_6solver_6Solver_20beta_iter)}, {__Pyx_NAMESTR("dot_r_iter"), (PyCFunction)__pyx_pw_6pynfft_6solver_6Solver_23dot_r_iter, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_6pynfft_6solver_6Solver_22dot_r_iter)}, {__Pyx_NAMESTR("dot_r_iter_old"), (PyCFunction)__pyx_pw_6pynfft_6solver_6Solver_25dot_r_iter_old, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_6pynfft_6solver_6Solver_24dot_r_iter_old)}, {__Pyx_NAMESTR("dot_z_hat_iter"), (PyCFunction)__pyx_pw_6pynfft_6solver_6Solver_27dot_z_hat_iter, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_6pynfft_6solver_6Solver_26dot_z_hat_iter)}, {__Pyx_NAMESTR("dot_z_hat_iter_old"), (PyCFunction)__pyx_pw_6pynfft_6solver_6Solver_29dot_z_hat_iter_old, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_6pynfft_6solver_6Solver_28dot_z_hat_iter_old)}, {__Pyx_NAMESTR("dot_p_hat_iter"), (PyCFunction)__pyx_pw_6pynfft_6solver_6Solver_31dot_p_hat_iter, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_6pynfft_6solver_6Solver_30dot_p_hat_iter)}, {__Pyx_NAMESTR("dot_v_iter"), (PyCFunction)__pyx_pw_6pynfft_6solver_6Solver_33dot_v_iter, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_6pynfft_6solver_6Solver_32dot_v_iter)}, {__Pyx_NAMESTR("dtype"), (PyCFunction)__pyx_pw_6pynfft_6solver_6Solver_35dtype, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_6pynfft_6solver_6Solver_34dtype)}, {__Pyx_NAMESTR("flags"), (PyCFunction)__pyx_pw_6pynfft_6solver_6Solver_37flags, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_6pynfft_6solver_6Solver_36flags)}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_6pynfft_6solver_Solver[] = { {(char *)"w", __pyx_getprop_6pynfft_6solver_6Solver_w, __pyx_setprop_6pynfft_6solver_6Solver_w, __Pyx_DOCSTR(__pyx_k_Weighting_factors), 0}, {(char *)"w_hat", __pyx_getprop_6pynfft_6solver_6Solver_w_hat, __pyx_setprop_6pynfft_6solver_6Solver_w_hat, __Pyx_DOCSTR(__pyx_k_Damping_factors), 0}, {(char *)"y", __pyx_getprop_6pynfft_6solver_6Solver_y, __pyx_setprop_6pynfft_6solver_6Solver_y, __Pyx_DOCSTR(__pyx_k_Right_hand_side_samples), 0}, {(char *)"f_hat_iter", __pyx_getprop_6pynfft_6solver_6Solver_f_hat_iter, __pyx_setprop_6pynfft_6solver_6Solver_f_hat_iter, __Pyx_DOCSTR(__pyx_k_Iterative_solution), 0}, {0, 0, 0, 0, 0} }; static PyTypeObject __pyx_type_6pynfft_6solver_Solver = { PyVarObject_HEAD_INIT(0, 0) __Pyx_NAMESTR("pynfft.solver.Solver"), /*tp_name*/ sizeof(struct __pyx_obj_6pynfft_6solver_Solver), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_6pynfft_6solver_Solver, /*tp_dealloc*/ 0, /*tp_print*/ 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #else 0, /*reserved*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ __Pyx_DOCSTR("\n Solver is a class for computing the inverse NFFT iteratively.\n\n The solver's instantiation requires an initialized NFFT object used \n internally for the multiple forward and adjoint NFFT performed. The class \n uses conjugate-gradient as the default solver but alternative solvers may \n be specified at construct-time.\n\n The solver must be first initialized by calling the :meth:`before_loop` \n method.\n\n The solver's implementation let you carry one iteration at a time with a \n call to :meth:`loop_one_step`. It is left to the user to chose whichever\n stopping condition to apply.\n \n The class exposes the internals of the solver through its respective \n properties. 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if (unlikely(!call)) return PyObject_Call(func, arg, kw); #if PY_VERSION_HEX >= 0x02060000 if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) return NULL; #endif result = (*call)(func, arg, kw); #if PY_VERSION_HEX >= 0x02060000 Py_LeaveRecursiveCall(); #endif if (unlikely(!result) && unlikely(!PyErr_Occurred())) { PyErr_SetString( PyExc_SystemError, "NULL result without error in PyObject_Call"); } return result; } #endif static CYTHON_INLINE void __Pyx_ExceptionSave(PyObject **type, PyObject **value, PyObject **tb) { #if CYTHON_COMPILING_IN_CPYTHON PyThreadState *tstate = PyThreadState_GET(); *type = tstate->exc_type; *value = tstate->exc_value; *tb = tstate->exc_traceback; Py_XINCREF(*type); Py_XINCREF(*value); Py_XINCREF(*tb); #else PyErr_GetExcInfo(type, value, tb); #endif } static void __Pyx_ExceptionReset(PyObject *type, PyObject *value, PyObject *tb) { #if CYTHON_COMPILING_IN_CPYTHON PyObject *tmp_type, *tmp_value, *tmp_tb; PyThreadState *tstate = PyThreadState_GET(); tmp_type = tstate->exc_type; tmp_value = tstate->exc_value; tmp_tb = tstate->exc_traceback; tstate->exc_type = type; tstate->exc_value = value; tstate->exc_traceback = tb; Py_XDECREF(tmp_type); Py_XDECREF(tmp_value); Py_XDECREF(tmp_tb); #else PyErr_SetExcInfo(type, value, tb); #endif } static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) { PyObject *local_type, *local_value, *local_tb; #if CYTHON_COMPILING_IN_CPYTHON PyObject *tmp_type, *tmp_value, *tmp_tb; PyThreadState *tstate = PyThreadState_GET(); local_type = tstate->curexc_type; local_value = tstate->curexc_value; local_tb = tstate->curexc_traceback; tstate->curexc_type = 0; tstate->curexc_value = 0; tstate->curexc_traceback = 0; #else PyErr_Fetch(&local_type, &local_value, &local_tb); #endif PyErr_NormalizeException(&local_type, &local_value, &local_tb); #if CYTHON_COMPILING_IN_CPYTHON if (unlikely(tstate->curexc_type)) #else if (unlikely(PyErr_Occurred())) #endif goto bad; #if PY_MAJOR_VERSION >= 3 if (local_tb) { if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0)) goto bad; } #endif Py_XINCREF(local_tb); Py_XINCREF(local_type); Py_XINCREF(local_value); *type = local_type; *value = local_value; *tb = local_tb; #if CYTHON_COMPILING_IN_CPYTHON tmp_type = tstate->exc_type; tmp_value = tstate->exc_value; tmp_tb = tstate->exc_traceback; tstate->exc_type = local_type; tstate->exc_value = local_value; tstate->exc_traceback = local_tb; Py_XDECREF(tmp_type); Py_XDECREF(tmp_value); Py_XDECREF(tmp_tb); #else PyErr_SetExcInfo(local_type, local_value, local_tb); #endif return 0; bad: *type = 0; *value = 0; *tb = 0; Py_XDECREF(local_type); Py_XDECREF(local_value); Py_XDECREF(local_tb); return -1; } static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb) { #if CYTHON_COMPILING_IN_CPYTHON PyObject *tmp_type, *tmp_value, *tmp_tb; PyThreadState *tstate = PyThreadState_GET(); tmp_type = tstate->curexc_type; tmp_value = tstate->curexc_value; tmp_tb = tstate->curexc_traceback; tstate->curexc_type = type; tstate->curexc_value = value; tstate->curexc_traceback = tb; Py_XDECREF(tmp_type); Py_XDECREF(tmp_value); Py_XDECREF(tmp_tb); #else PyErr_Restore(type, value, tb); #endif } static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb) { #if CYTHON_COMPILING_IN_CPYTHON PyThreadState *tstate = PyThreadState_GET(); *type = tstate->curexc_type; *value = tstate->curexc_value; *tb = tstate->curexc_traceback; tstate->curexc_type = 0; tstate->curexc_value = 0; tstate->curexc_traceback = 0; #else PyErr_Fetch(type, value, tb); #endif } static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb) { PyObject *tmp_type, *tmp_value, *tmp_tb; #if CYTHON_COMPILING_IN_CPYTHON PyThreadState *tstate = PyThreadState_GET(); tmp_type = tstate->exc_type; tmp_value = tstate->exc_value; tmp_tb = tstate->exc_traceback; tstate->exc_type = *type; tstate->exc_value = *value; tstate->exc_traceback = *tb; #else PyErr_GetExcInfo(&tmp_type, &tmp_value, &tmp_tb); PyErr_SetExcInfo(*type, *value, *tb); #endif *type = tmp_type; *value = tmp_value; *tb = tmp_tb; } #if PY_MAJOR_VERSION < 3 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, CYTHON_UNUSED PyObject *cause) { Py_XINCREF(type); if (!value || value == Py_None) value = NULL; else Py_INCREF(value); if (!tb || tb == Py_None) tb = NULL; else { Py_INCREF(tb); if (!PyTraceBack_Check(tb)) { PyErr_SetString(PyExc_TypeError, "raise: arg 3 must be a traceback or None"); goto raise_error; } } #if PY_VERSION_HEX < 0x02050000 if (PyClass_Check(type)) { #else if (PyType_Check(type)) { #endif #if CYTHON_COMPILING_IN_PYPY if (!value) { Py_INCREF(Py_None); value = Py_None; } #endif PyErr_NormalizeException(&type, &value, &tb); } else { if (value) { PyErr_SetString(PyExc_TypeError, "instance exception may not have a separate value"); goto raise_error; } value = type; #if PY_VERSION_HEX < 0x02050000 if (PyInstance_Check(type)) { type = (PyObject*) ((PyInstanceObject*)type)->in_class; Py_INCREF(type); } else { type = 0; PyErr_SetString(PyExc_TypeError, "raise: exception must be an old-style class or instance"); goto raise_error; } #else type = (PyObject*) Py_TYPE(type); Py_INCREF(type); if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) { PyErr_SetString(PyExc_TypeError, "raise: exception class must be a subclass of BaseException"); goto raise_error; } #endif } __Pyx_ErrRestore(type, value, tb); return; raise_error: Py_XDECREF(value); Py_XDECREF(type); Py_XDECREF(tb); return; } #else /* Python 3+ */ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { PyObject* owned_instance = NULL; if (tb == Py_None) { tb = 0; } else if (tb && !PyTraceBack_Check(tb)) { PyErr_SetString(PyExc_TypeError, "raise: arg 3 must be a traceback or None"); goto bad; } if (value == Py_None) value = 0; if (PyExceptionInstance_Check(type)) { if (value) { PyErr_SetString(PyExc_TypeError, "instance exception may not have a separate value"); goto bad; } value = type; type = (PyObject*) Py_TYPE(value); } else if (PyExceptionClass_Check(type)) { PyObject *instance_class = NULL; if (value && PyExceptionInstance_Check(value)) { instance_class = (PyObject*) Py_TYPE(value); if (instance_class != type) { if (PyObject_IsSubclass(instance_class, type)) { type = instance_class; } else { instance_class = NULL; } } } if (!instance_class) { PyObject *args; if (!value) args = PyTuple_New(0); else if (PyTuple_Check(value)) { Py_INCREF(value); args = value; } else args = PyTuple_Pack(1, value); if (!args) goto bad; owned_instance = PyObject_Call(type, args, NULL); Py_DECREF(args); if (!owned_instance) goto bad; value = owned_instance; if (!PyExceptionInstance_Check(value)) { PyErr_Format(PyExc_TypeError, "calling %R should have returned an instance of " "BaseException, not %R", type, Py_TYPE(value)); goto bad; } } } else { PyErr_SetString(PyExc_TypeError, "raise: exception class must be a subclass of BaseException"); goto bad; } #if PY_VERSION_HEX >= 0x03030000 if (cause) { #else if (cause && cause != Py_None) { #endif PyObject *fixed_cause; if (cause == Py_None) { fixed_cause = NULL; } else if (PyExceptionClass_Check(cause)) { fixed_cause = PyObject_CallObject(cause, NULL); if (fixed_cause == NULL) goto bad; } else if (PyExceptionInstance_Check(cause)) { fixed_cause = cause; Py_INCREF(fixed_cause); } else { PyErr_SetString(PyExc_TypeError, "exception causes must derive from " "BaseException"); goto bad; } PyException_SetCause(value, fixed_cause); } PyErr_SetObject(type, value); if (tb) { PyThreadState *tstate = PyThreadState_GET(); PyObject* tmp_tb = tstate->curexc_traceback; if (tb != tmp_tb) { Py_INCREF(tb); tstate->curexc_traceback = tb; Py_XDECREF(tmp_tb); } } bad: Py_XDECREF(owned_instance); return; } #endif static CYTHON_INLINE int __Pyx_PyObject_SetSlice( PyObject* obj, PyObject* value, Py_ssize_t cstart, Py_ssize_t cstop, PyObject** _py_start, PyObject** _py_stop, PyObject** _py_slice, int has_cstart, int has_cstop, CYTHON_UNUSED int wraparound) { #if CYTHON_COMPILING_IN_CPYTHON PyMappingMethods* mp; #if PY_MAJOR_VERSION < 3 PySequenceMethods* ms = Py_TYPE(obj)->tp_as_sequence; if (likely(ms && ms->sq_ass_slice)) { if (!has_cstart) { if (_py_start && (*_py_start != Py_None)) { cstart = __Pyx_PyIndex_AsSsize_t(*_py_start); if ((cstart == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad; } else cstart = 0; } if (!has_cstop) { if (_py_stop && (*_py_stop != Py_None)) { cstop = __Pyx_PyIndex_AsSsize_t(*_py_stop); if ((cstop == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad; } else cstop = PY_SSIZE_T_MAX; } if (wraparound && unlikely((cstart < 0) | (cstop < 0)) && likely(ms->sq_length)) { Py_ssize_t l = ms->sq_length(obj); if (likely(l >= 0)) { if (cstop < 0) { cstop += l; if (cstop < 0) cstop = 0; } if (cstart < 0) { cstart += l; if (cstart < 0) cstart = 0; } } else { if (PyErr_ExceptionMatches(PyExc_OverflowError)) PyErr_Clear(); else goto bad; } } return ms->sq_ass_slice(obj, cstart, cstop, value); } #endif mp = Py_TYPE(obj)->tp_as_mapping; if (likely(mp && mp->mp_ass_subscript)) #endif { int result; PyObject *py_slice, *py_start, *py_stop; if (_py_slice) { py_slice = *_py_slice; } else { PyObject* owned_start = NULL; PyObject* owned_stop = NULL; if (_py_start) { py_start = *_py_start; } else { if (has_cstart) { owned_start = py_start = PyInt_FromSsize_t(cstart); if (unlikely(!py_start)) goto bad; } else py_start = Py_None; } if (_py_stop) { py_stop = *_py_stop; } else { if (has_cstop) { owned_stop = py_stop = PyInt_FromSsize_t(cstop); if (unlikely(!py_stop)) { Py_XDECREF(owned_start); goto bad; } } else py_stop = Py_None; } py_slice = PySlice_New(py_start, py_stop, Py_None); Py_XDECREF(owned_start); Py_XDECREF(owned_stop); if (unlikely(!py_slice)) goto bad; } #if CYTHON_COMPILING_IN_CPYTHON result = mp->mp_ass_subscript(obj, py_slice, value); #else result = value ? PyObject_SetItem(obj, py_slice, value) : PyObject_DelItem(obj, py_slice); #endif if (!_py_slice) { Py_DECREF(py_slice); } return result; } PyErr_Format(PyExc_TypeError, "'%.200s' object does not support slice %.10s", Py_TYPE(obj)->tp_name, value ? "assignment" : "deletion"); bad: return -1; } static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { PyErr_Format(PyExc_ValueError, "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); } static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { PyErr_Format(PyExc_ValueError, "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", index, (index == 1) ? "" : "s"); } static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); } static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { if (unlikely(!type)) { PyErr_SetString(PyExc_SystemError, "Missing type object"); return 0; } if (likely(PyObject_TypeCheck(obj, type))) return 1; PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", Py_TYPE(obj)->tp_name, type->tp_name); return 0; } static int __Pyx_SetVtable(PyObject *dict, void *vtable) { #if PY_VERSION_HEX >= 0x02070000 && !(PY_MAJOR_VERSION==3&&PY_MINOR_VERSION==0) PyObject *ob = PyCapsule_New(vtable, 0, 0); #else PyObject *ob = PyCObject_FromVoidPtr(vtable, 0); #endif if (!ob) goto bad; if (PyDict_SetItem(dict, __pyx_n_s_pyx_vtable, ob) < 0) goto bad; Py_DECREF(ob); return 0; bad: Py_XDECREF(ob); return -1; } static void* __Pyx_GetVtable(PyObject *dict) { void* ptr; PyObject *ob = PyObject_GetItem(dict, __pyx_n_s_pyx_vtable); if (!ob) goto bad; #if PY_VERSION_HEX >= 0x02070000 && !(PY_MAJOR_VERSION==3&&PY_MINOR_VERSION==0) ptr = PyCapsule_GetPointer(ob, 0); #else ptr = PyCObject_AsVoidPtr(ob); #endif if (!ptr && !PyErr_Occurred()) PyErr_SetString(PyExc_RuntimeError, "invalid vtable found for imported type"); Py_DECREF(ob); return ptr; bad: Py_XDECREF(ob); return NULL; } static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) { PyObject *result; #if CYTHON_COMPILING_IN_CPYTHON result = PyDict_GetItem(__pyx_d, name); if (result) { Py_INCREF(result); } else { #else result = PyObject_GetItem(__pyx_d, name); if (!result) { PyErr_Clear(); #endif result = __Pyx_GetBuiltinName(name); } return result; } static PyObject *__Pyx_GetNameInClass(PyObject *nmspace, PyObject *name) { PyObject *result; result = __Pyx_PyObject_GetAttrStr(nmspace, name); if (!result) result = __Pyx_GetModuleGlobalName(name); return result; } static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { PyObject *empty_list = 0; PyObject *module = 0; PyObject *global_dict = 0; PyObject *empty_dict = 0; PyObject *list; #if PY_VERSION_HEX < 0x03030000 PyObject *py_import; py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); if (!py_import) goto bad; #endif if (from_list) list = from_list; else { empty_list = PyList_New(0); if (!empty_list) goto bad; list = empty_list; } global_dict = PyModule_GetDict(__pyx_m); if (!global_dict) goto bad; empty_dict = PyDict_New(); if (!empty_dict) goto bad; #if PY_VERSION_HEX >= 0x02050000 { #if PY_MAJOR_VERSION >= 3 if (level == -1) { if (strchr(__Pyx_MODULE_NAME, '.')) { #if PY_VERSION_HEX < 0x03030000 PyObject *py_level = PyInt_FromLong(1); if (!py_level) goto bad; module = PyObject_CallFunctionObjArgs(py_import, name, global_dict, empty_dict, list, py_level, NULL); Py_DECREF(py_level); #else module = PyImport_ImportModuleLevelObject( name, global_dict, empty_dict, list, 1); #endif if (!module) { if (!PyErr_ExceptionMatches(PyExc_ImportError)) goto bad; PyErr_Clear(); } } level = 0; /* try absolute import on failure */ } #endif if (!module) { #if PY_VERSION_HEX < 0x03030000 PyObject *py_level = PyInt_FromLong(level); if (!py_level) goto bad; module = PyObject_CallFunctionObjArgs(py_import, name, global_dict, empty_dict, list, py_level, NULL); Py_DECREF(py_level); #else module = PyImport_ImportModuleLevelObject( name, global_dict, empty_dict, list, level); #endif } } #else if (level>0) { PyErr_SetString(PyExc_RuntimeError, "Relative import is not supported for Python <=2.4."); goto bad; } module = PyObject_CallFunctionObjArgs(py_import, name, global_dict, empty_dict, list, NULL); #endif bad: #if PY_VERSION_HEX < 0x03030000 Py_XDECREF(py_import); #endif Py_XDECREF(empty_list); Py_XDECREF(empty_dict); return module; } static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { const int neg_one = (int) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(int) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(int) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); } else if (sizeof(int) <= sizeof(unsigned long long)) { return PyLong_FromUnsignedLongLong((unsigned long long) value); } } else { if (sizeof(int) <= sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(int) <= sizeof(long long)) { return PyLong_FromLongLong((long long) value); } } { int one = 1; int little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&value; return _PyLong_FromByteArray(bytes, sizeof(int), little, !is_unsigned); } } #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func) \ { \ func_type value = func(x); \ if (sizeof(target_type) < sizeof(func_type)) { \ if (unlikely(value != (func_type) (target_type) value)) { \ func_type zero = 0; \ PyErr_SetString(PyExc_OverflowError, \ (is_unsigned && unlikely(value < zero)) ? \ "can't convert negative value to " #target_type : \ "value too large to convert to " #target_type); \ return (target_type) -1; \ } \ } \ return (target_type) value; \ } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE Py_intptr_t __Pyx_PyInt_As_Py_intptr_t(PyObject *x) { const Py_intptr_t neg_one = (Py_intptr_t) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(Py_intptr_t) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(Py_intptr_t, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to Py_intptr_t"); return (Py_intptr_t) -1; } return (Py_intptr_t) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(Py_intptr_t)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (Py_intptr_t) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to Py_intptr_t"); return (Py_intptr_t) -1; } if (sizeof(Py_intptr_t) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(Py_intptr_t, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(Py_intptr_t) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(Py_intptr_t, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(Py_intptr_t)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(Py_intptr_t) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(Py_intptr_t) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(Py_intptr_t) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(Py_intptr_t, long, PyLong_AsLong) } else if (sizeof(Py_intptr_t) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(Py_intptr_t, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else Py_intptr_t val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (Py_intptr_t) -1; } } else { Py_intptr_t val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (Py_intptr_t) -1; val = __Pyx_PyInt_As_Py_intptr_t(tmp); Py_DECREF(tmp); return val; } } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE size_t __Pyx_PyInt_As_size_t(PyObject *x) { const size_t neg_one = (size_t) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(size_t) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(size_t, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to size_t"); return (size_t) -1; } return (size_t) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(size_t)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (size_t) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to size_t"); return (size_t) -1; } if (sizeof(size_t) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(size_t, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(size_t) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(size_t, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(size_t)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(size_t) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(size_t) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(size_t) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(size_t, long, PyLong_AsLong) } else if (sizeof(size_t) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(size_t, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else size_t val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (size_t) -1; } } else { size_t val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (size_t) -1; val = __Pyx_PyInt_As_size_t(tmp); Py_DECREF(tmp); return val; } } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { const int neg_one = (int) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(int) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to int"); return (int) -1; } return (int) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(int)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (int) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to int"); return (int) -1; } if (sizeof(int) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(int, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(int) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(int, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(int)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(int) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(int) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(int) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(int, long, PyLong_AsLong) } else if (sizeof(int) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(int, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else int val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (int) -1; } } else { int val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (int) -1; val = __Pyx_PyInt_As_int(tmp); Py_DECREF(tmp); return val; } } static CYTHON_INLINE PyObject* __Pyx_PyInt_From_unsigned_int(unsigned int value) { const unsigned int neg_one = (unsigned int) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(unsigned int) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(unsigned int) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); } else if (sizeof(unsigned int) <= sizeof(unsigned long long)) { return PyLong_FromUnsignedLongLong((unsigned long long) value); } } else { if (sizeof(unsigned int) <= sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(unsigned int) <= sizeof(long long)) { return PyLong_FromLongLong((long long) value); } } { int one = 1; int little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&value; return _PyLong_FromByteArray(bytes, sizeof(unsigned int), little, !is_unsigned); } } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE unsigned int __Pyx_PyInt_As_unsigned_int(PyObject *x) { const unsigned int neg_one = (unsigned int) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(unsigned int) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(unsigned int, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to unsigned int"); return (unsigned int) -1; } return (unsigned int) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(unsigned int)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (unsigned int) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to unsigned int"); return (unsigned int) -1; } if (sizeof(unsigned int) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(unsigned int) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(unsigned int)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(unsigned int) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(unsigned int) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(unsigned int) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(unsigned int, long, PyLong_AsLong) } else if (sizeof(unsigned int) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(unsigned int, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else unsigned int val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (unsigned int) -1; } } else { unsigned int val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (unsigned int) -1; val = __Pyx_PyInt_As_unsigned_int(tmp); Py_DECREF(tmp); return val; } } #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return ::std::complex< float >(x, y); } #else static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return x + y*(__pyx_t_float_complex)_Complex_I; } #endif #else static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { __pyx_t_float_complex z; z.real = x; z.imag = y; return z; } #endif #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex a, __pyx_t_float_complex b) { return (a.real == b.real) && (a.imag == b.imag); } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; z.real = a.real + b.real; z.imag = a.imag + b.imag; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; z.real = a.real - b.real; z.imag = a.imag - b.imag; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; z.real = a.real * b.real - a.imag * b.imag; z.imag = a.real * b.imag + a.imag * b.real; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; float denom = b.real * b.real + b.imag * b.imag; z.real = (a.real * b.real + a.imag * b.imag) / denom; z.imag = (a.imag * b.real - a.real * b.imag) / denom; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex a) { __pyx_t_float_complex z; z.real = -a.real; z.imag = -a.imag; return z; } static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex a) { return (a.real == 0) && (a.imag == 0); } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex a) { __pyx_t_float_complex z; z.real = a.real; z.imag = -a.imag; return z; } #if 1 static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex z) { #if !defined(HAVE_HYPOT) || defined(_MSC_VER) return sqrtf(z.real*z.real + z.imag*z.imag); #else return hypotf(z.real, z.imag); #endif } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; float r, lnr, theta, z_r, z_theta; if (b.imag == 0 && b.real == (int)b.real) { if (b.real < 0) { float denom = a.real * a.real + a.imag * a.imag; a.real = a.real / denom; a.imag = -a.imag / denom; b.real = -b.real; } switch ((int)b.real) { case 0: z.real = 1; z.imag = 0; return z; case 1: return a; case 2: z = __Pyx_c_prodf(a, a); return __Pyx_c_prodf(a, a); case 3: z = __Pyx_c_prodf(a, a); return __Pyx_c_prodf(z, a); case 4: z = __Pyx_c_prodf(a, a); return __Pyx_c_prodf(z, z); } } if (a.imag == 0) { if (a.real == 0) { return a; } r = a.real; theta = 0; } else { r = __Pyx_c_absf(a); theta = atan2f(a.imag, a.real); } lnr = logf(r); z_r = expf(lnr * b.real - theta * b.imag); z_theta = theta * b.real + lnr * b.imag; z.real = z_r * cosf(z_theta); z.imag = z_r * sinf(z_theta); return z; } #endif #endif #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return ::std::complex< double >(x, y); } #else static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return x + y*(__pyx_t_double_complex)_Complex_I; } #endif #else static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { __pyx_t_double_complex z; z.real = x; z.imag = y; return z; } #endif #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex a, __pyx_t_double_complex b) { return (a.real == b.real) && (a.imag == b.imag); } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; z.real = a.real + b.real; z.imag = a.imag + b.imag; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; z.real = a.real - b.real; z.imag = a.imag - b.imag; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; z.real = a.real * b.real - a.imag * b.imag; z.imag = a.real * b.imag + a.imag * b.real; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; double denom = b.real * b.real + b.imag * b.imag; z.real = (a.real * b.real + a.imag * b.imag) / denom; z.imag = (a.imag * b.real - a.real * b.imag) / denom; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex a) { __pyx_t_double_complex z; z.real = -a.real; z.imag = -a.imag; return z; } static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex a) { return (a.real == 0) && (a.imag == 0); } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex a) { __pyx_t_double_complex z; z.real = a.real; z.imag = -a.imag; return z; } #if 1 static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex z) { #if !defined(HAVE_HYPOT) || defined(_MSC_VER) return sqrt(z.real*z.real + z.imag*z.imag); #else return hypot(z.real, z.imag); #endif } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; double r, lnr, theta, z_r, z_theta; if (b.imag == 0 && b.real == (int)b.real) { if (b.real < 0) { double denom = a.real * a.real + a.imag * a.imag; a.real = a.real / denom; a.imag = -a.imag / denom; b.real = -b.real; } switch ((int)b.real) { case 0: z.real = 1; z.imag = 0; return z; case 1: return a; case 2: z = __Pyx_c_prod(a, a); return __Pyx_c_prod(a, a); case 3: z = __Pyx_c_prod(a, a); return __Pyx_c_prod(z, a); case 4: z = __Pyx_c_prod(a, a); return __Pyx_c_prod(z, z); } } if (a.imag == 0) { if (a.real == 0) { return a; } r = a.real; theta = 0; } else { r = __Pyx_c_abs(a); theta = atan2(a.imag, a.real); } lnr = log(r); z_r = exp(lnr * b.real - theta * b.imag); z_theta = theta * b.real + lnr * b.imag; z.real = z_r * cos(z_theta); z.imag = z_r * sin(z_theta); return z; } #endif #endif static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { const long neg_one = (long) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(long) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(long) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); } else if (sizeof(long) <= sizeof(unsigned long long)) { return PyLong_FromUnsignedLongLong((unsigned long long) value); } } else { if (sizeof(long) <= sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(long) <= sizeof(long long)) { return PyLong_FromLongLong((long long) value); } } { int one = 1; int little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&value; return _PyLong_FromByteArray(bytes, sizeof(long), little, !is_unsigned); } } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { const long neg_one = (long) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(long) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to long"); return (long) -1; } return (long) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(long)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (long) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to long"); return (long) -1; } if (sizeof(long) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(long, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(long) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(long, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(long)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(long) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(long) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(long) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(long, long, PyLong_AsLong) } else if (sizeof(long) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(long, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else long val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (long) -1; } } else { long val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (long) -1; val = __Pyx_PyInt_As_long(tmp); Py_DECREF(tmp); return val; } } static int __Pyx_check_binary_version(void) { char ctversion[4], rtversion[4]; PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) { char message[200]; PyOS_snprintf(message, sizeof(message), "compiletime version %s of module '%.100s' " "does not match runtime version %s", ctversion, __Pyx_MODULE_NAME, rtversion); #if PY_VERSION_HEX < 0x02050000 return PyErr_Warn(NULL, message); #else return PyErr_WarnEx(NULL, message, 1); #endif } return 0; } static int __Pyx_ExportVoidPtr(PyObject *name, void *p, const char *sig) { PyObject *d; PyObject *cobj = 0; d = PyDict_GetItem(__pyx_d, __pyx_n_s_pyx_capi); Py_XINCREF(d); if (!d) { d = PyDict_New(); if (!d) goto bad; if (__Pyx_PyObject_SetAttrStr(__pyx_m, __pyx_n_s_pyx_capi, d) < 0) goto bad; } #if PY_VERSION_HEX >= 0x02070000 && !(PY_MAJOR_VERSION==3 && PY_MINOR_VERSION==0) cobj = PyCapsule_New(p, sig, 0); #else cobj = PyCObject_FromVoidPtrAndDesc(p, (void *)sig, 0); #endif if (!cobj) goto bad; if (PyDict_SetItem(d, name, cobj) < 0) goto bad; Py_DECREF(cobj); Py_DECREF(d); return 0; bad: Py_XDECREF(cobj); Py_XDECREF(d); return -1; } #ifndef __PYX_HAVE_RT_ImportModule #define __PYX_HAVE_RT_ImportModule static PyObject *__Pyx_ImportModule(const char *name) { PyObject *py_name = 0; PyObject *py_module = 0; py_name = __Pyx_PyIdentifier_FromString(name); if (!py_name) goto bad; py_module = PyImport_Import(py_name); Py_DECREF(py_name); return py_module; bad: Py_XDECREF(py_name); return 0; } #endif #ifndef __PYX_HAVE_RT_ImportType #define __PYX_HAVE_RT_ImportType static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict) { PyObject *py_module = 0; PyObject *result = 0; PyObject *py_name = 0; char warning[200]; Py_ssize_t basicsize; #ifdef Py_LIMITED_API PyObject *py_basicsize; #endif py_module = __Pyx_ImportModule(module_name); if (!py_module) goto bad; py_name = __Pyx_PyIdentifier_FromString(class_name); if (!py_name) goto bad; result = PyObject_GetAttr(py_module, py_name); Py_DECREF(py_name); py_name = 0; Py_DECREF(py_module); py_module = 0; if (!result) goto bad; if (!PyType_Check(result)) { PyErr_Format(PyExc_TypeError, "%.200s.%.200s is not a type object", module_name, class_name); goto bad; } #ifndef Py_LIMITED_API basicsize = ((PyTypeObject *)result)->tp_basicsize; #else py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); if (!py_basicsize) goto bad; basicsize = PyLong_AsSsize_t(py_basicsize); Py_DECREF(py_basicsize); py_basicsize = 0; if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) goto bad; #endif if (!strict && (size_t)basicsize > size) { PyOS_snprintf(warning, sizeof(warning), "%s.%s size changed, may indicate binary incompatibility", module_name, class_name); #if PY_VERSION_HEX < 0x02050000 if (PyErr_Warn(NULL, warning) < 0) goto bad; #else if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad; #endif } else if ((size_t)basicsize != size) { PyErr_Format(PyExc_ValueError, "%.200s.%.200s has the wrong size, try recompiling", module_name, class_name); goto bad; } return (PyTypeObject *)result; bad: Py_XDECREF(py_module); Py_XDECREF(result); return NULL; } #endif #ifndef __PYX_HAVE_RT_ImportVoidPtr #define __PYX_HAVE_RT_ImportVoidPtr static int __Pyx_ImportVoidPtr(PyObject *module, const char *name, void **p, const char *sig) { PyObject *d = 0; PyObject *cobj = 0; d = PyObject_GetAttrString(module, (char *)"__pyx_capi__"); if (!d) goto bad; cobj = PyDict_GetItemString(d, name); if (!cobj) { PyErr_Format(PyExc_ImportError, "%.200s does not export expected C variable %.200s", PyModule_GetName(module), name); goto bad; } #if PY_VERSION_HEX >= 0x02070000 && !(PY_MAJOR_VERSION==3 && PY_MINOR_VERSION==0) if (!PyCapsule_IsValid(cobj, sig)) { PyErr_Format(PyExc_TypeError, "C variable %.200s.%.200s has wrong signature (expected %.500s, got %.500s)", PyModule_GetName(module), name, sig, PyCapsule_GetName(cobj)); goto bad; } *p = PyCapsule_GetPointer(cobj, sig); #else {const char *desc, *s1, *s2; desc = (const char *)PyCObject_GetDesc(cobj); if (!desc) goto bad; s1 = desc; s2 = sig; while (*s1 != '\0' && *s1 == *s2) { s1++; s2++; } if (*s1 != *s2) { PyErr_Format(PyExc_TypeError, "C variable %.200s.%.200s has wrong signature (expected %.500s, got %.500s)", PyModule_GetName(module), name, sig, desc); goto bad; } *p = PyCObject_AsVoidPtr(cobj);} #endif if (!(*p)) goto bad; Py_DECREF(d); return 0; bad: Py_XDECREF(d); return -1; } #endif static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { int start = 0, mid = 0, end = count - 1; if (end >= 0 && code_line > entries[end].code_line) { return count; } while (start < end) { mid = (start + end) / 2; if (code_line < entries[mid].code_line) { end = mid; } else if (code_line > entries[mid].code_line) { start = mid + 1; } else { return mid; } } if (code_line <= entries[mid].code_line) { return mid; } else { return mid + 1; } } static PyCodeObject *__pyx_find_code_object(int code_line) { PyCodeObject* code_object; int pos; if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) { return NULL; } pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) { return NULL; } code_object = __pyx_code_cache.entries[pos].code_object; Py_INCREF(code_object); return code_object; } static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { int pos, i; __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries; if (unlikely(!code_line)) { return; } if (unlikely(!entries)) { entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry)); if (likely(entries)) { __pyx_code_cache.entries = entries; __pyx_code_cache.max_count = 64; __pyx_code_cache.count = 1; entries[0].code_line = code_line; entries[0].code_object = code_object; Py_INCREF(code_object); } return; } pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) { PyCodeObject* tmp = entries[pos].code_object; entries[pos].code_object = code_object; Py_DECREF(tmp); return; } if (__pyx_code_cache.count == __pyx_code_cache.max_count) { int new_max = __pyx_code_cache.max_count + 64; entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc( __pyx_code_cache.entries, new_max*sizeof(__Pyx_CodeObjectCacheEntry)); if (unlikely(!entries)) { return; } __pyx_code_cache.entries = entries; __pyx_code_cache.max_count = new_max; } for (i=__pyx_code_cache.count; i>pos; i--) { entries[i] = entries[i-1]; } entries[pos].code_line = code_line; entries[pos].code_object = code_object; __pyx_code_cache.count++; Py_INCREF(code_object); } #include "compile.h" #include "frameobject.h" #include "traceback.h" static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = 0; PyObject *py_srcfile = 0; PyObject *py_funcname = 0; #if PY_MAJOR_VERSION < 3 py_srcfile = PyString_FromString(filename); #else py_srcfile = PyUnicode_FromString(filename); #endif if (!py_srcfile) goto bad; if (c_line) { #if PY_MAJOR_VERSION < 3 py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); #else py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); #endif } else { #if PY_MAJOR_VERSION < 3 py_funcname = PyString_FromString(funcname); #else py_funcname = PyUnicode_FromString(funcname); #endif } if (!py_funcname) goto bad; py_code = __Pyx_PyCode_New( 0, /*int argcount,*/ 0, /*int kwonlyargcount,*/ 0, /*int nlocals,*/ 0, /*int stacksize,*/ 0, /*int flags,*/ __pyx_empty_bytes, /*PyObject *code,*/ __pyx_empty_tuple, /*PyObject *consts,*/ __pyx_empty_tuple, /*PyObject *names,*/ __pyx_empty_tuple, /*PyObject *varnames,*/ __pyx_empty_tuple, /*PyObject *freevars,*/ __pyx_empty_tuple, /*PyObject *cellvars,*/ py_srcfile, /*PyObject *filename,*/ py_funcname, /*PyObject *name,*/ py_line, /*int firstlineno,*/ __pyx_empty_bytes /*PyObject *lnotab*/ ); Py_DECREF(py_srcfile); Py_DECREF(py_funcname); return py_code; bad: Py_XDECREF(py_srcfile); Py_XDECREF(py_funcname); return NULL; } static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = 0; PyObject *py_globals = 0; PyFrameObject *py_frame = 0; py_code = __pyx_find_code_object(c_line ? c_line : py_line); if (!py_code) { py_code = __Pyx_CreateCodeObjectForTraceback( funcname, c_line, py_line, filename); if (!py_code) goto bad; __pyx_insert_code_object(c_line ? c_line : py_line, py_code); } py_globals = PyModule_GetDict(__pyx_m); if (!py_globals) goto bad; py_frame = PyFrame_New( PyThreadState_GET(), /*PyThreadState *tstate,*/ py_code, /*PyCodeObject *code,*/ py_globals, /*PyObject *globals,*/ 0 /*PyObject *locals*/ ); if (!py_frame) goto bad; py_frame->f_lineno = py_line; PyTraceBack_Here(py_frame); bad: Py_XDECREF(py_code); Py_XDECREF(py_frame); } static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { while (t->p) { #if PY_MAJOR_VERSION < 3 if (t->is_unicode) { *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL); } else if (t->intern) { *t->p = PyString_InternFromString(t->s); } else { *t->p = PyString_FromStringAndSize(t->s, t->n - 1); } #else /* Python 3+ has unicode identifiers */ if (t->is_unicode | t->is_str) { if (t->intern) { *t->p = PyUnicode_InternFromString(t->s); } else if (t->encoding) { *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL); } else { *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1); } } else { *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1); } #endif if (!*t->p) return -1; ++t; } return 0; } static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { return __Pyx_PyUnicode_FromStringAndSize(c_str, strlen(c_str)); } static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) { Py_ssize_t ignore; return __Pyx_PyObject_AsStringAndSize(o, &ignore); } static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT if ( #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII __Pyx_sys_getdefaultencoding_not_ascii && #endif PyUnicode_Check(o)) { #if PY_VERSION_HEX < 0x03030000 char* defenc_c; PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL); if (!defenc) return NULL; defenc_c = PyBytes_AS_STRING(defenc); #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII { char* end = defenc_c + PyBytes_GET_SIZE(defenc); char* c; for (c = defenc_c; c < end; c++) { if ((unsigned char) (*c) >= 128) { PyUnicode_AsASCIIString(o); return NULL; } } } #endif /*__PYX_DEFAULT_STRING_ENCODING_IS_ASCII*/ *length = PyBytes_GET_SIZE(defenc); return defenc_c; #else /* PY_VERSION_HEX < 0x03030000 */ if (PyUnicode_READY(o) == -1) return NULL; #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII if (PyUnicode_IS_ASCII(o)) { *length = PyUnicode_GET_LENGTH(o); return PyUnicode_AsUTF8(o); } else { PyUnicode_AsASCIIString(o); return NULL; } #else /* __PYX_DEFAULT_STRING_ENCODING_IS_ASCII */ return PyUnicode_AsUTF8AndSize(o, length); #endif /* __PYX_DEFAULT_STRING_ENCODING_IS_ASCII */ #endif /* PY_VERSION_HEX < 0x03030000 */ } else #endif /* __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT */ #if !CYTHON_COMPILING_IN_PYPY #if PY_VERSION_HEX >= 0x02060000 if (PyByteArray_Check(o)) { *length = PyByteArray_GET_SIZE(o); return PyByteArray_AS_STRING(o); } else #endif #endif { char* result; int r = PyBytes_AsStringAndSize(o, &result, length); if (unlikely(r < 0)) { return NULL; } else { return result; } } } static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { int is_true = x == Py_True; if (is_true | (x == Py_False) | (x == Py_None)) return is_true; else return PyObject_IsTrue(x); } static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x) { PyNumberMethods *m; const char *name = NULL; PyObject *res = NULL; #if PY_MAJOR_VERSION < 3 if (PyInt_Check(x) || PyLong_Check(x)) #else if (PyLong_Check(x)) #endif return Py_INCREF(x), x; m = Py_TYPE(x)->tp_as_number; #if PY_MAJOR_VERSION < 3 if (m && m->nb_int) { name = "int"; res = PyNumber_Int(x); } else if (m && m->nb_long) { name = "long"; res = PyNumber_Long(x); } #else if (m && m->nb_int) { name = "int"; res = PyNumber_Long(x); } #endif if (res) { #if PY_MAJOR_VERSION < 3 if (!PyInt_Check(res) && !PyLong_Check(res)) { #else if (!PyLong_Check(res)) { #endif PyErr_Format(PyExc_TypeError, "__%.4s__ returned non-%.4s (type %.200s)", name, name, Py_TYPE(res)->tp_name); Py_DECREF(res); return NULL; } } else if (!PyErr_Occurred()) { PyErr_SetString(PyExc_TypeError, "an integer is required"); } return res; } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { Py_ssize_t ival; PyObject *x; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_CheckExact(b))) return PyInt_AS_LONG(b); #endif if (likely(PyLong_CheckExact(b))) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS switch (Py_SIZE(b)) { case -1: return -(sdigit)((PyLongObject*)b)->ob_digit[0]; case 0: return 0; case 1: return ((PyLongObject*)b)->ob_digit[0]; } #endif #endif #if PY_VERSION_HEX < 0x02060000 return PyInt_AsSsize_t(b); #else return PyLong_AsSsize_t(b); #endif } x = PyNumber_Index(b); if (!x) return -1; ival = PyInt_AsSsize_t(x); Py_DECREF(x); return ival; } static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { #if PY_VERSION_HEX < 0x02050000 if (ival <= LONG_MAX) return PyInt_FromLong((long)ival); else { unsigned char *bytes = (unsigned char *) &ival; int one = 1; int little = (int)*(unsigned char*)&one; return _PyLong_FromByteArray(bytes, sizeof(size_t), little, 0); } #else return PyInt_FromSize_t(ival); #endif } #endif /* Py_PYTHON_H */ pyNFFT-1.3.2/pynfft/solver.pyx0000644000175000017500000002473212366173704020242 0ustar gv10-debiangv10-debian00000000000000# -*- coding: utf-8 -*- # # Copyright (C) 2013-2014 Ghislain Vaillant # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program. If not, see . import copy import numpy as np cimport numpy as np from libc.stdlib cimport malloc, free from cnfft3 cimport * from .nfft cimport NFFT from .nfft import NFFT # Initialize module # Numpy must be initialized. When using numpy from C or Cython you must # _always_ do that, or you will have segfaults np.import_array() solver_flags_dict = { 'LANDWEBER':LANDWEBER, 'STEEPEST_DESCENT':STEEPEST_DESCENT, 'CGNR':CGNR, 'CGNE':CGNE, 'NORMS_FOR_LANDWEBER':NORMS_FOR_LANDWEBER, 'PRECOMPUTE_WEIGHT':PRECOMPUTE_WEIGHT, 'PRECOMPUTE_DAMP':PRECOMPUTE_DAMP, } solver_flags = copy.copy(solver_flags_dict) cdef class Solver(object): ''' Solver is a class for computing the inverse NFFT iteratively. The solver's instantiation requires an initialized NFFT object used internally for the multiple forward and adjoint NFFT performed. The class uses conjugate-gradient as the default solver but alternative solvers may be specified at construct-time. The solver must be first initialized by calling the :meth:`before_loop` method. The solver's implementation let you carry one iteration at a time with a call to :meth:`loop_one_step`. It is left to the user to chose whichever stopping condition to apply. The class exposes the internals of the solver through its respective properties. For instance, the residuals for the current iteration can be accessed via the :attr:r_iter attribute. ''' def __cinit__(self, NFFT nfft_plan, flags=None): # support only double / double complex NFFT # TODO: if support for multiple floating precision lands in the # NFFT library, adapt this section to dynamically figure the # real and complex dtypes dtype_real = np.dtype('float64') dtype_complex = np.dtype('complex128') # convert tuple of litteral precomputation flags to its expected # C-compatible value. Each flag is a power of 2, which allows to compute # this value using BITOR operations. cdef unsigned int _flags = 0 flags_used = ('PRECOMPUTE_WEIGHT', 'PRECOMPUTE_DAMP') # sanity checks on user specified flags if any, # else use default ones: if flags is not None: try: flags = tuple(flags) except: flags = (flags,) finally: flags_used += flags else: flags_used += ('CGNR',) for each_flag in flags_used: try: _flags |= solver_flags_dict[each_flag] except KeyError: raise ValueError('Invalid flag: ' + '\'' + each_flag + '\' is not a valid flag.') # initialize plan try: solver_init_advanced_complex(&self._solver_plan, &(nfft_plan._plan), _flags) except: raise MemoryError self._nfft_plan = nfft_plan d = nfft_plan.d M = nfft_plan.M N = nfft_plan.N cdef np.npy_intp shape_M[1] shape_M[0] = M cdef np.npy_intp *shape_N try: shape_N = malloc(d*sizeof(np.npy_intp)) except: raise MemoryError for dt in range(d): shape_N[dt] = N[dt] self._w = np.PyArray_SimpleNewFromData(1, shape_M, np.NPY_FLOAT64, (self._solver_plan.w)) self._w.ravel()[:] = 1 # make sure weights are initialized self._w_hat = np.PyArray_SimpleNewFromData(d, shape_N, np.NPY_FLOAT64, (self._solver_plan.w_hat)) self._w_hat.ravel()[:] = 1 # make sure weights are initialized self._y = np.PyArray_SimpleNewFromData(1, shape_M, np.NPY_COMPLEX128, (self._solver_plan.y)) self._f_hat_iter = np.PyArray_SimpleNewFromData(d, shape_N, np.NPY_COMPLEX128, (self._solver_plan.f_hat_iter)) self._f_hat_iter.ravel()[:] = 0 # default initial guess self._r_iter = np.PyArray_SimpleNewFromData(1, shape_M, np.NPY_COMPLEX128, (self._solver_plan.r_iter)) self._z_hat_iter = np.PyArray_SimpleNewFromData(d, shape_N, np.NPY_COMPLEX128, (self._solver_plan.z_hat_iter)) self._p_hat_iter = np.PyArray_SimpleNewFromData(d, shape_N, np.NPY_COMPLEX128, (self._solver_plan.p_hat_iter)) self._v_iter = np.PyArray_SimpleNewFromData(1, shape_M, np.NPY_COMPLEX128, (self._solver_plan.v_iter)) free(shape_N) self._dtype = dtype_complex self._flags = flags_used def __init__(self, nfft_plan, flags=None): ''' :param plan: instance of NFFT. :type plan: :class:`NFFT` :param flags: list of instantiation flags, see below. :type flags: tuple **Instantiation flags** +---------------------+-----------------------------------------------------------------------------+ | Flag | Description | +=====================+=============================================================================+ | LANDWEBER | Use Landweber (Richardson) iteration. | +---------------------+-----------------------------------------------------------------------------+ | STEEPEST_DESCENT | Use steepest descent iteration. | +---------------------+-----------------------------------------------------------------------------+ | CGNR | Use conjugate gradient (normal equation of the 1st kind). | +---------------------+-----------------------------------------------------------------------------+ | CGNE | Use conjugate gradient (normal equation of the 2nd kind). | +---------------------+-----------------------------------------------------------------------------+ | NORMS_FOR_LANDWEBER | Use Landweber iteration to compute the residual norm. | +---------------------+-----------------------------------------------------------------------------+ | PRECOMPUTE_WEIGHT | Weight the samples, e.g. to cope with varying sampling density. | +---------------------+-----------------------------------------------------------------------------+ | PRECOMPUTE_DAMP | Weight the Fourier coefficients, e.g. to favour fast decaying coefficients. | +---------------------+-----------------------------------------------------------------------------+ Default value is ``flags = ('CGNR',)``. ''' pass def __dealloc__(self): solver_finalize_complex(&self._solver_plan) def before_loop(self): '''Initialize the solver internals.''' self._before_loop() def loop_one_step(self): '''Perform one iteration of the solver.''' self._loop_one_step() cdef void _before_loop(self): with nogil: solver_before_loop_complex(&self._solver_plan) cdef void _loop_one_step(self): with nogil: solver_loop_one_step_complex(&self._solver_plan) property w: '''Weighting factors.''' def __get__(self): return self._w def __set__(self, array): self._w.ravel()[:] = array.ravel() property w_hat: '''Damping factors.''' def __get__(self): return self._w_hat def __set__(self, array): self._w_hat.ravel()[:] = array.ravel() property y: '''Right hand side, samples.''' def __get__(self): return self._y def __set__(self, array): self._y.ravel()[:] = array.ravel() property f_hat_iter: '''Iterative solution.''' def __get__(self): return self._f_hat_iter def __set__(self, array): self._f_hat_iter.ravel()[:] = array.ravel() @property def r_iter(self): '''Residual vector.''' return self._r_iter @property def z_hat_iter(self): '''Residual of normal equation of the first kind.''' return self._z_hat_iter @property def p_hat_iter(self): '''Search direction.''' return self._p_hat_iter @property def v_iter(self): '''Residual vector update.''' return self._v_iter @property def alpha_iter(self): '''Step size for search direction.''' return self._solver_plan.alpha_iter @property def beta_iter(self): '''Step size for search direction.''' return self._solver_plan.beta_iter @property def dot_r_iter(self): '''Weighted dotproduct of r_iter.''' return self._solver_plan.dot_r_iter @property def dot_r_iter_old(self): '''Previous dot_r_iter.''' return self._solver_plan.dot_r_iter_old @property def dot_z_hat_iter(self): '''Weighted dotproduct of z_hat_iter.''' return self._solver_plan.dot_z_hat_iter @property def dot_z_hat_iter_old(self): '''Previous dot_z_hat_iter.''' return self._solver_plan.dot_z_hat_iter_old @property def dot_p_hat_iter(self): '''Weighted dotproduct of p_hat_iter.''' return self._solver_plan.dot_p_hat_iter @property def dot_v_iter(self): '''Weighted dotproduct of v_iter.''' return self._solver_plan.dot_v_iter @property def dtype(self): '''The dtype of the solver.''' return self._dtype @property def flags(self): '''The precomputation flags.''' return self._flags pyNFFT-1.3.2/pynfft/nfft.c0000644000175000017500000164043312366173763017277 0ustar gv10-debiangv10-debian00000000000000/* Generated by Cython 0.20.1post0 (Debian 0.20.1+git90-g0e6e38e-1+b1) on Wed Jul 30 14:49:39 2014 */ #define PY_SSIZE_T_CLEAN #ifndef CYTHON_USE_PYLONG_INTERNALS #ifdef PYLONG_BITS_IN_DIGIT #define CYTHON_USE_PYLONG_INTERNALS 0 #else #include "pyconfig.h" #ifdef PYLONG_BITS_IN_DIGIT #define CYTHON_USE_PYLONG_INTERNALS 1 #else #define CYTHON_USE_PYLONG_INTERNALS 0 #endif #endif #endif #include "Python.h" #ifndef Py_PYTHON_H #error Python headers needed to compile C extensions, please install development version of Python. #elif PY_VERSION_HEX < 0x02040000 #error Cython requires Python 2.4+. #else #define CYTHON_ABI "0_20_1post0" #include /* For offsetof */ #ifndef offsetof #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) #endif #if !defined(WIN32) && !defined(MS_WINDOWS) #ifndef __stdcall #define __stdcall #endif #ifndef __cdecl #define __cdecl #endif #ifndef __fastcall #define __fastcall #endif #endif #ifndef DL_IMPORT #define DL_IMPORT(t) t #endif #ifndef DL_EXPORT #define DL_EXPORT(t) t #endif #ifndef PY_LONG_LONG #define PY_LONG_LONG LONG_LONG #endif #ifndef Py_HUGE_VAL #define Py_HUGE_VAL HUGE_VAL #endif #ifdef PYPY_VERSION #define CYTHON_COMPILING_IN_PYPY 1 #define CYTHON_COMPILING_IN_CPYTHON 0 #else #define CYTHON_COMPILING_IN_PYPY 0 #define CYTHON_COMPILING_IN_CPYTHON 1 #endif #if CYTHON_COMPILING_IN_PYPY #define Py_OptimizeFlag 0 #endif #if PY_VERSION_HEX < 0x02050000 typedef int Py_ssize_t; #define PY_SSIZE_T_MAX INT_MAX #define PY_SSIZE_T_MIN INT_MIN #define PY_FORMAT_SIZE_T "" #define CYTHON_FORMAT_SSIZE_T "" #define PyInt_FromSsize_t(z) PyInt_FromLong(z) #define PyInt_AsSsize_t(o) __Pyx_PyInt_As_int(o) #define PyNumber_Index(o) ((PyNumber_Check(o) && !PyFloat_Check(o)) ? 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if (ascii_chars_u == NULL) goto bad; ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL); if (ascii_chars_b == NULL || strncmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) { PyErr_Format( PyExc_ValueError, "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.", default_encoding_c); goto bad; } } Py_XDECREF(sys); Py_XDECREF(default_encoding); Py_XDECREF(ascii_chars_u); Py_XDECREF(ascii_chars_b); return 0; bad: Py_XDECREF(sys); Py_XDECREF(default_encoding); Py_XDECREF(ascii_chars_u); Py_XDECREF(ascii_chars_b); return -1; } #endif #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3 #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL) #else #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL) #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT static char* __PYX_DEFAULT_STRING_ENCODING; 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/* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":731 * * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<< * ctypedef npy_uint32 uint32_t * ctypedef npy_uint64 uint64_t */ typedef npy_uint16 __pyx_t_5numpy_uint16_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":732 * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<< * ctypedef npy_uint64 uint64_t * #ctypedef npy_uint96 uint96_t */ typedef npy_uint32 __pyx_t_5numpy_uint32_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":733 * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<< * #ctypedef npy_uint96 uint96_t * #ctypedef npy_uint128 uint128_t */ typedef npy_uint64 __pyx_t_5numpy_uint64_t; /* "/usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":737 * #ctypedef npy_uint128 uint128_t * * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<< * ctypedef npy_float64 float64_t * #ctypedef npy_float80 float80_t */ typedef npy_float32 __pyx_t_5numpy_float32_t; 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/*proto*/ static void __Pyx_ExceptionReset(PyObject *type, PyObject *value, PyObject *tb); /*proto*/ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb); /*proto*/ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) { PyListObject* L = (PyListObject*) list; Py_ssize_t len = Py_SIZE(list); if (likely(L->allocated > len)) { Py_INCREF(x); PyList_SET_ITEM(list, len, x); Py_SIZE(list) = len+1; return 0; } return PyList_Append(list, x); } #else #define __Pyx_ListComp_Append(L,x) PyList_Append(L,x) #endif static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name); /*proto*/ static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb); /*proto*/ static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb); /*proto*/ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); /*proto*/ static CYTHON_INLINE int __Pyx_PySequence_Contains(PyObject* item, PyObject* seq, int eq) { int result = PySequence_Contains(seq, item); return unlikely(result < 0) ? result : (result == (eq == Py_EQ)); } static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb); /*proto*/ #define __Pyx_PyObject_DelSlice(obj, cstart, cstop, py_start, py_stop, py_slice, has_cstart, has_cstop, wraparound) \ __Pyx_PyObject_SetSlice(obj, (PyObject*)NULL, cstart, cstop, py_start, py_stop, py_slice, has_cstart, has_cstop, wraparound) static CYTHON_INLINE int __Pyx_PyObject_SetSlice( PyObject* obj, PyObject* value, Py_ssize_t cstart, Py_ssize_t cstop, PyObject** py_start, PyObject** py_stop, PyObject** py_slice, int has_cstart, int has_cstop, int wraparound); static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index); static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void); static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); /*proto*/ static int __Pyx_SetVtable(PyObject *dict, void *vtable); /*proto*/ static PyObject *__Pyx_GetNameInClass(PyObject *nmspace, PyObject *name); /*proto*/ static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); /*proto*/ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value); static CYTHON_INLINE size_t __Pyx_PyInt_As_size_t(PyObject *); static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); static CYTHON_INLINE Py_intptr_t __Pyx_PyInt_As_Py_intptr_t(PyObject *); #ifndef __PYX_FORCE_INIT_THREADS #define __PYX_FORCE_INIT_THREADS 0 #endif static CYTHON_INLINE PyObject* __Pyx_PyInt_From_unsigned_int(unsigned int value); static CYTHON_INLINE unsigned int __Pyx_PyInt_As_unsigned_int(PyObject *); #if CYTHON_CCOMPLEX #ifdef __cplusplus #define __Pyx_CREAL(z) ((z).real()) #define __Pyx_CIMAG(z) ((z).imag()) #else #define __Pyx_CREAL(z) (__real__(z)) #define __Pyx_CIMAG(z) (__imag__(z)) #endif #else #define __Pyx_CREAL(z) ((z).real) #define __Pyx_CIMAG(z) ((z).imag) #endif #if (defined(_WIN32) || defined(__clang__)) && defined(__cplusplus) && CYTHON_CCOMPLEX #define __Pyx_SET_CREAL(z,x) ((z).real(x)) #define __Pyx_SET_CIMAG(z,y) ((z).imag(y)) #else #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x) #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y) #endif static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float, float); #if CYTHON_CCOMPLEX #define __Pyx_c_eqf(a, b) ((a)==(b)) #define __Pyx_c_sumf(a, b) ((a)+(b)) #define __Pyx_c_difff(a, b) ((a)-(b)) #define __Pyx_c_prodf(a, b) ((a)*(b)) #define __Pyx_c_quotf(a, b) ((a)/(b)) #define __Pyx_c_negf(a) (-(a)) #ifdef __cplusplus #define __Pyx_c_is_zerof(z) ((z)==(float)0) #define __Pyx_c_conjf(z) (::std::conj(z)) #if 1 #define __Pyx_c_absf(z) (::std::abs(z)) #define __Pyx_c_powf(a, b) (::std::pow(a, b)) #endif #else #define __Pyx_c_is_zerof(z) ((z)==0) #define __Pyx_c_conjf(z) (conjf(z)) #if 1 #define __Pyx_c_absf(z) (cabsf(z)) #define __Pyx_c_powf(a, b) (cpowf(a, b)) #endif #endif #else static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex); static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex); #if 1 static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex, __pyx_t_float_complex); #endif #endif static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double, double); #if CYTHON_CCOMPLEX #define __Pyx_c_eq(a, b) ((a)==(b)) #define __Pyx_c_sum(a, b) ((a)+(b)) #define __Pyx_c_diff(a, b) ((a)-(b)) #define __Pyx_c_prod(a, b) ((a)*(b)) #define __Pyx_c_quot(a, b) ((a)/(b)) #define __Pyx_c_neg(a) (-(a)) #ifdef __cplusplus #define __Pyx_c_is_zero(z) ((z)==(double)0) #define __Pyx_c_conj(z) (::std::conj(z)) #if 1 #define __Pyx_c_abs(z) (::std::abs(z)) #define __Pyx_c_pow(a, b) (::std::pow(a, b)) #endif #else #define __Pyx_c_is_zero(z) ((z)==0) #define __Pyx_c_conj(z) (conj(z)) #if 1 #define __Pyx_c_abs(z) (cabs(z)) #define __Pyx_c_pow(a, b) (cpow(a, b)) #endif #endif #else static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex); static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex); #if 1 static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex, __pyx_t_double_complex); #endif #endif static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); static int __Pyx_check_binary_version(void); #if CYTHON_COMPILING_IN_CPYTHON #define __Pyx_PyObject_DelAttrStr(o,n) __Pyx_PyObject_SetAttrStr(o,n,NULL) static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value) { PyTypeObject* tp = Py_TYPE(obj); if (likely(tp->tp_setattro)) return tp->tp_setattro(obj, attr_name, value); #if PY_MAJOR_VERSION < 3 if (likely(tp->tp_setattr)) return tp->tp_setattr(obj, PyString_AS_STRING(attr_name), value); #endif return PyObject_SetAttr(obj, attr_name, value); } #else #define __Pyx_PyObject_DelAttrStr(o,n) PyObject_DelAttr(o,n) #define __Pyx_PyObject_SetAttrStr(o,n,v) PyObject_SetAttr(o,n,v) #endif static int __Pyx_ExportVoidPtr(PyObject *name, void *p, const char *sig); /*proto*/ #if !defined(__Pyx_PyIdentifier_FromString) #if PY_MAJOR_VERSION < 3 #define __Pyx_PyIdentifier_FromString(s) PyString_FromString(s) #else #define __Pyx_PyIdentifier_FromString(s) PyUnicode_FromString(s) #endif #endif static PyObject *__Pyx_ImportModule(const char *name); /*proto*/ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict); /*proto*/ typedef struct { int code_line; PyCodeObject* code_object; } __Pyx_CodeObjectCacheEntry; struct __Pyx_CodeObjectCache { int count; int max_count; __Pyx_CodeObjectCacheEntry* entries; }; static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL}; static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line); static PyCodeObject *__pyx_find_code_object(int code_line); static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object); static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename); /*proto*/ static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); /*proto*/ /* Module declarations from 'pynfft.cnfft3' */ /* Module declarations from 'cpython.buffer' */ /* Module declarations from 'cpython.ref' */ /* Module declarations from 'libc.string' */ /* Module declarations from 'libc.stdio' */ /* Module declarations from 'cpython.object' */ /* Module declarations from '__builtin__' */ /* Module declarations from 'cpython.type' */ static PyTypeObject *__pyx_ptype_7cpython_4type_type = 0; /* Module declarations from 'libc.stdlib' */ /* Module declarations from 'numpy' */ /* Module declarations from 'numpy' */ static PyTypeObject *__pyx_ptype_5numpy_dtype = 0; static PyTypeObject *__pyx_ptype_5numpy_flatiter = 0; static PyTypeObject *__pyx_ptype_5numpy_broadcast = 0; static PyTypeObject *__pyx_ptype_5numpy_ndarray = 0; static PyTypeObject *__pyx_ptype_5numpy_ufunc = 0; static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, char *, char *, int *); /*proto*/ /* Module declarations from 'libc' */ /* Module declarations from 'libc.limits' */ /* Module declarations from 'pynfft.nfft' */ static PyTypeObject *__pyx_ptype_6pynfft_4nfft_NFFT = 0; static PyObject *__pyx_v_6pynfft_4nfft_nfft_flags_dict = 0; static PyObject *__pyx_v_6pynfft_4nfft_fftw_flags_dict = 0; static PyObject *__pyx_v_6pynfft_4nfft_nfft_supported_flags_tuple = 0; static void __pyx_f_6pynfft_4nfft__cleanup(void); /*proto*/ #define __Pyx_MODULE_NAME "pynfft.nfft" int __pyx_module_is_main_pynfft__nfft = 0; /* Implementation of 'pynfft.nfft' */ static PyObject *__pyx_builtin_property; static PyObject *__pyx_builtin_TypeError; static PyObject *__pyx_builtin_ValueError; static PyObject *__pyx_builtin_all; static PyObject *__pyx_builtin_KeyError; static PyObject *__pyx_builtin_MemoryError; static PyObject *__pyx_builtin_range; static PyObject *__pyx_builtin_RuntimeError; static int __pyx_pf_6pynfft_4nfft_4NFFT___cinit__(struct __pyx_obj_6pynfft_4nfft_NFFT *__pyx_v_self, PyObject *__pyx_v_N, PyObject *__pyx_v_M, PyObject *__pyx_v_n, PyObject *__pyx_v_m, PyObject *__pyx_v_flags, CYTHON_UNUSED PyObject *__pyx_v_args, CYTHON_UNUSED PyObject *__pyx_v_kwargs); /* proto */ static int __pyx_pf_6pynfft_4nfft_4NFFT_2__init__(CYTHON_UNUSED struct __pyx_obj_6pynfft_4nfft_NFFT *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_N, CYTHON_UNUSED PyObject *__pyx_v_M, CYTHON_UNUSED PyObject *__pyx_v_n, CYTHON_UNUSED PyObject *__pyx_v_m, CYTHON_UNUSED PyObject *__pyx_v_flags, CYTHON_UNUSED PyObject *__pyx_v_args, CYTHON_UNUSED PyObject *__pyx_v_kwargs); /* proto */ static void __pyx_pf_6pynfft_4nfft_4NFFT_4__dealloc__(struct __pyx_obj_6pynfft_4nfft_NFFT *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_4nfft_4NFFT_6precompute(struct __pyx_obj_6pynfft_4nfft_NFFT *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_4nfft_4NFFT_8trafo(struct __pyx_obj_6pynfft_4nfft_NFFT *__pyx_v_self, PyObject *__pyx_v_use_dft); /* proto */ static PyObject *__pyx_pf_6pynfft_4nfft_4NFFT_10adjoint(struct __pyx_obj_6pynfft_4nfft_NFFT *__pyx_v_self, PyObject *__pyx_v_use_dft); /* proto */ static PyObject *__pyx_pf_6pynfft_4nfft_4NFFT_1f___get__(struct __pyx_obj_6pynfft_4nfft_NFFT *__pyx_v_self); /* proto */ static int __pyx_pf_6pynfft_4nfft_4NFFT_1f_2__set__(struct __pyx_obj_6pynfft_4nfft_NFFT *__pyx_v_self, PyObject *__pyx_v_array); /* proto */ static PyObject *__pyx_pf_6pynfft_4nfft_4NFFT_5f_hat___get__(struct __pyx_obj_6pynfft_4nfft_NFFT *__pyx_v_self); /* proto */ static int __pyx_pf_6pynfft_4nfft_4NFFT_5f_hat_2__set__(struct __pyx_obj_6pynfft_4nfft_NFFT *__pyx_v_self, PyObject *__pyx_v_array); /* proto */ static PyObject *__pyx_pf_6pynfft_4nfft_4NFFT_1x___get__(struct __pyx_obj_6pynfft_4nfft_NFFT *__pyx_v_self); /* proto */ static int __pyx_pf_6pynfft_4nfft_4NFFT_1x_2__set__(struct __pyx_obj_6pynfft_4nfft_NFFT *__pyx_v_self, PyObject *__pyx_v_array); /* proto */ static PyObject *__pyx_pf_6pynfft_4nfft_4NFFT_12d(struct __pyx_obj_6pynfft_4nfft_NFFT *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_4nfft_4NFFT_14m(struct __pyx_obj_6pynfft_4nfft_NFFT *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_4nfft_4NFFT_16M(struct __pyx_obj_6pynfft_4nfft_NFFT *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_4nfft_4NFFT_18N_total(struct __pyx_obj_6pynfft_4nfft_NFFT *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_4nfft_4NFFT_20N(struct __pyx_obj_6pynfft_4nfft_NFFT *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_4nfft_4NFFT_22n(struct __pyx_obj_6pynfft_4nfft_NFFT *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_4nfft_4NFFT_24dtype(struct __pyx_obj_6pynfft_4nfft_NFFT *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_6pynfft_4nfft_4NFFT_26flags(struct __pyx_obj_6pynfft_4nfft_NFFT *__pyx_v_self); /* proto */ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ static PyObject *__pyx_tp_new_6pynfft_4nfft_NFFT(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static char __pyx_k_B[] = "B"; static char __pyx_k_H[] = "H"; static char __pyx_k_I[] = "I"; static char __pyx_k_L[] = "L"; static char __pyx_k_M[] = "M"; static char __pyx_k_N[] = "N"; static char __pyx_k_O[] = "O"; static char __pyx_k_Q[] = "Q"; static char __pyx_k_b[] = "b"; static char __pyx_k_d[] = "d"; static char __pyx_k_f[] = "f"; static char __pyx_k_g[] = "g"; static char __pyx_k_h[] = "h"; static char __pyx_k_i[] = "i"; static char __pyx_k_l[] = "l"; static char __pyx_k_m[] = "m"; static char __pyx_k_n[] = "n"; static char __pyx_k_q[] = "q"; static char __pyx_k_Zd[] = "Zd"; static char __pyx_k_Zf[] = "Zf"; static char __pyx_k_Zg[] = "Zg"; static char __pyx_k_np[] = "np"; static char __pyx_k__20[] = "'"; static char __pyx_k_all[] = "all"; static char __pyx_k_copy[] = "copy"; static char __pyx_k_main[] = "__main__"; static char __pyx_k_prod[] = "prod"; static char __pyx_k_test[] = "__test__"; static char __pyx_k_dtype[] = "dtype"; static char __pyx_k_f_hat[] = "f_hat"; static char __pyx_k_flags[] = "flags"; static char __pyx_k_numpy[] = "numpy"; static char __pyx_k_range[] = "range"; static char __pyx_k_ravel[] = "ravel"; static char __pyx_k_FG_PSI[] = "FG_PSI"; static char __pyx_k_import[] = "__import__"; static char __pyx_k_N_total[] = "N_total"; static char __pyx_k_PRE_PSI[] = "PRE_PSI"; static char __pyx_k_float64[] = "float64"; static char __pyx_k_use_dft[] = "use_dft"; static char __pyx_k_KeyError[] = "KeyError"; static char __pyx_k_MALLOC_F[] = "MALLOC_F"; static char __pyx_k_MALLOC_X[] = "MALLOC_X"; 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Py_XDECREF(tmp_type); Py_XDECREF(tmp_value); Py_XDECREF(tmp_tb); #else PyErr_SetExcInfo(type, value, tb); #endif } static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) { PyObject *local_type, *local_value, *local_tb; #if CYTHON_COMPILING_IN_CPYTHON PyObject *tmp_type, *tmp_value, *tmp_tb; PyThreadState *tstate = PyThreadState_GET(); local_type = tstate->curexc_type; local_value = tstate->curexc_value; local_tb = tstate->curexc_traceback; tstate->curexc_type = 0; tstate->curexc_value = 0; tstate->curexc_traceback = 0; #else PyErr_Fetch(&local_type, &local_value, &local_tb); #endif PyErr_NormalizeException(&local_type, &local_value, &local_tb); #if CYTHON_COMPILING_IN_CPYTHON if (unlikely(tstate->curexc_type)) #else if (unlikely(PyErr_Occurred())) #endif goto bad; #if PY_MAJOR_VERSION >= 3 if (local_tb) { if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0)) goto bad; } #endif Py_XINCREF(local_tb); Py_XINCREF(local_type); Py_XINCREF(local_value); *type = local_type; *value = local_value; *tb = local_tb; #if CYTHON_COMPILING_IN_CPYTHON tmp_type = tstate->exc_type; tmp_value = tstate->exc_value; tmp_tb = tstate->exc_traceback; tstate->exc_type = local_type; tstate->exc_value = local_value; tstate->exc_traceback = local_tb; Py_XDECREF(tmp_type); Py_XDECREF(tmp_value); Py_XDECREF(tmp_tb); #else PyErr_SetExcInfo(local_type, local_value, local_tb); #endif return 0; bad: *type = 0; *value = 0; *tb = 0; Py_XDECREF(local_type); Py_XDECREF(local_value); Py_XDECREF(local_tb); return -1; } static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) { PyObject *result; #if CYTHON_COMPILING_IN_CPYTHON result = PyDict_GetItem(__pyx_d, name); if (result) { Py_INCREF(result); } else { #else result = PyObject_GetItem(__pyx_d, name); if (!result) { PyErr_Clear(); #endif result = __Pyx_GetBuiltinName(name); } return result; } static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb) { #if CYTHON_COMPILING_IN_CPYTHON PyObject *tmp_type, *tmp_value, *tmp_tb; PyThreadState *tstate = PyThreadState_GET(); tmp_type = tstate->curexc_type; tmp_value = tstate->curexc_value; tmp_tb = tstate->curexc_traceback; tstate->curexc_type = type; tstate->curexc_value = value; tstate->curexc_traceback = tb; Py_XDECREF(tmp_type); Py_XDECREF(tmp_value); Py_XDECREF(tmp_tb); #else PyErr_Restore(type, value, tb); #endif } static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb) { #if CYTHON_COMPILING_IN_CPYTHON PyThreadState *tstate = PyThreadState_GET(); *type = tstate->curexc_type; *value = tstate->curexc_value; *tb = tstate->curexc_traceback; tstate->curexc_type = 0; tstate->curexc_value = 0; tstate->curexc_traceback = 0; #else PyErr_Fetch(type, value, tb); #endif } #if PY_MAJOR_VERSION < 3 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, CYTHON_UNUSED PyObject *cause) { Py_XINCREF(type); if (!value || value == Py_None) value = NULL; else Py_INCREF(value); if (!tb || tb == Py_None) tb = NULL; else { Py_INCREF(tb); if (!PyTraceBack_Check(tb)) { PyErr_SetString(PyExc_TypeError, "raise: arg 3 must be a traceback or None"); goto raise_error; } } #if PY_VERSION_HEX < 0x02050000 if (PyClass_Check(type)) { #else if (PyType_Check(type)) { #endif #if CYTHON_COMPILING_IN_PYPY if (!value) { Py_INCREF(Py_None); value = Py_None; } #endif PyErr_NormalizeException(&type, &value, &tb); } else { if (value) { PyErr_SetString(PyExc_TypeError, "instance exception may not have a separate value"); goto raise_error; } value = type; #if PY_VERSION_HEX < 0x02050000 if (PyInstance_Check(type)) { type = (PyObject*) ((PyInstanceObject*)type)->in_class; Py_INCREF(type); } else { type = 0; PyErr_SetString(PyExc_TypeError, "raise: exception must be an old-style class or instance"); goto raise_error; } #else type = (PyObject*) Py_TYPE(type); Py_INCREF(type); if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) { PyErr_SetString(PyExc_TypeError, "raise: exception class must be a subclass of BaseException"); goto raise_error; } #endif } __Pyx_ErrRestore(type, value, tb); return; raise_error: Py_XDECREF(value); Py_XDECREF(type); Py_XDECREF(tb); return; } #else /* Python 3+ */ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { PyObject* owned_instance = NULL; if (tb == Py_None) { tb = 0; } else if (tb && !PyTraceBack_Check(tb)) { PyErr_SetString(PyExc_TypeError, "raise: arg 3 must be a traceback or None"); goto bad; } if (value == Py_None) value = 0; if (PyExceptionInstance_Check(type)) { if (value) { PyErr_SetString(PyExc_TypeError, "instance exception may not have a separate value"); goto bad; } value = type; type = (PyObject*) Py_TYPE(value); } else if (PyExceptionClass_Check(type)) { PyObject *instance_class = NULL; if (value && PyExceptionInstance_Check(value)) { instance_class = (PyObject*) Py_TYPE(value); if (instance_class != type) { if (PyObject_IsSubclass(instance_class, type)) { type = instance_class; } else { instance_class = NULL; } } } if (!instance_class) { PyObject *args; if (!value) args = PyTuple_New(0); else if (PyTuple_Check(value)) { Py_INCREF(value); args = value; } else args = PyTuple_Pack(1, value); if (!args) goto bad; owned_instance = PyObject_Call(type, args, NULL); Py_DECREF(args); if (!owned_instance) goto bad; value = owned_instance; if (!PyExceptionInstance_Check(value)) { PyErr_Format(PyExc_TypeError, "calling %R should have returned an instance of " "BaseException, not %R", type, Py_TYPE(value)); goto bad; } } } else { PyErr_SetString(PyExc_TypeError, "raise: exception class must be a subclass of BaseException"); goto bad; } #if PY_VERSION_HEX >= 0x03030000 if (cause) { #else if (cause && cause != Py_None) { #endif PyObject *fixed_cause; if (cause == Py_None) { fixed_cause = NULL; } else if (PyExceptionClass_Check(cause)) { fixed_cause = PyObject_CallObject(cause, NULL); if (fixed_cause == NULL) goto bad; } else if (PyExceptionInstance_Check(cause)) { fixed_cause = cause; Py_INCREF(fixed_cause); } else { PyErr_SetString(PyExc_TypeError, "exception causes must derive from " "BaseException"); goto bad; } PyException_SetCause(value, fixed_cause); } PyErr_SetObject(type, value); if (tb) { PyThreadState *tstate = PyThreadState_GET(); PyObject* tmp_tb = tstate->curexc_traceback; if (tb != tmp_tb) { Py_INCREF(tb); tstate->curexc_traceback = tb; Py_XDECREF(tmp_tb); } } bad: Py_XDECREF(owned_instance); return; } #endif static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb) { PyObject *tmp_type, *tmp_value, *tmp_tb; #if CYTHON_COMPILING_IN_CPYTHON PyThreadState *tstate = PyThreadState_GET(); tmp_type = tstate->exc_type; tmp_value = tstate->exc_value; tmp_tb = tstate->exc_traceback; tstate->exc_type = *type; tstate->exc_value = *value; tstate->exc_traceback = *tb; #else PyErr_GetExcInfo(&tmp_type, &tmp_value, &tmp_tb); PyErr_SetExcInfo(*type, *value, *tb); #endif *type = tmp_type; *value = tmp_value; *tb = tmp_tb; } static CYTHON_INLINE int __Pyx_PyObject_SetSlice( PyObject* obj, PyObject* value, Py_ssize_t cstart, Py_ssize_t cstop, PyObject** _py_start, PyObject** _py_stop, PyObject** _py_slice, int has_cstart, int has_cstop, CYTHON_UNUSED int wraparound) { #if CYTHON_COMPILING_IN_CPYTHON PyMappingMethods* mp; #if PY_MAJOR_VERSION < 3 PySequenceMethods* ms = Py_TYPE(obj)->tp_as_sequence; if (likely(ms && ms->sq_ass_slice)) { if (!has_cstart) { if (_py_start && (*_py_start != Py_None)) { cstart = __Pyx_PyIndex_AsSsize_t(*_py_start); if ((cstart == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad; } else cstart = 0; } if (!has_cstop) { if (_py_stop && (*_py_stop != Py_None)) { cstop = __Pyx_PyIndex_AsSsize_t(*_py_stop); if ((cstop == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad; } else cstop = PY_SSIZE_T_MAX; } if (wraparound && unlikely((cstart < 0) | (cstop < 0)) && likely(ms->sq_length)) { Py_ssize_t l = ms->sq_length(obj); if (likely(l >= 0)) { if (cstop < 0) { cstop += l; if (cstop < 0) cstop = 0; } if (cstart < 0) { cstart += l; if (cstart < 0) cstart = 0; } } else { if (PyErr_ExceptionMatches(PyExc_OverflowError)) PyErr_Clear(); else goto bad; } } return ms->sq_ass_slice(obj, cstart, cstop, value); } #endif mp = Py_TYPE(obj)->tp_as_mapping; if (likely(mp && mp->mp_ass_subscript)) #endif { int result; PyObject *py_slice, *py_start, *py_stop; if (_py_slice) { py_slice = *_py_slice; } else { PyObject* owned_start = NULL; PyObject* owned_stop = NULL; if (_py_start) { py_start = *_py_start; } else { if (has_cstart) { owned_start = py_start = PyInt_FromSsize_t(cstart); if (unlikely(!py_start)) goto bad; } else py_start = Py_None; } if (_py_stop) { py_stop = *_py_stop; } else { if (has_cstop) { owned_stop = py_stop = PyInt_FromSsize_t(cstop); if (unlikely(!py_stop)) { Py_XDECREF(owned_start); goto bad; } } else py_stop = Py_None; } py_slice = PySlice_New(py_start, py_stop, Py_None); Py_XDECREF(owned_start); Py_XDECREF(owned_stop); if (unlikely(!py_slice)) goto bad; } #if CYTHON_COMPILING_IN_CPYTHON result = mp->mp_ass_subscript(obj, py_slice, value); #else result = value ? PyObject_SetItem(obj, py_slice, value) : PyObject_DelItem(obj, py_slice); #endif if (!_py_slice) { Py_DECREF(py_slice); } return result; } PyErr_Format(PyExc_TypeError, "'%.200s' object does not support slice %.10s", Py_TYPE(obj)->tp_name, value ? "assignment" : "deletion"); bad: return -1; } static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { PyErr_Format(PyExc_ValueError, "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); } static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { PyErr_Format(PyExc_ValueError, "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", index, (index == 1) ? "" : "s"); } static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); } static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { if (unlikely(!type)) { PyErr_SetString(PyExc_SystemError, "Missing type object"); return 0; } if (likely(PyObject_TypeCheck(obj, type))) return 1; PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", Py_TYPE(obj)->tp_name, type->tp_name); return 0; } static int __Pyx_SetVtable(PyObject *dict, void *vtable) { #if PY_VERSION_HEX >= 0x02070000 && !(PY_MAJOR_VERSION==3&&PY_MINOR_VERSION==0) PyObject *ob = PyCapsule_New(vtable, 0, 0); #else PyObject *ob = PyCObject_FromVoidPtr(vtable, 0); #endif if (!ob) goto bad; if (PyDict_SetItem(dict, __pyx_n_s_pyx_vtable, ob) < 0) goto bad; Py_DECREF(ob); return 0; bad: Py_XDECREF(ob); return -1; } static PyObject *__Pyx_GetNameInClass(PyObject *nmspace, PyObject *name) { PyObject *result; result = __Pyx_PyObject_GetAttrStr(nmspace, name); if (!result) result = __Pyx_GetModuleGlobalName(name); return result; } static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { PyObject *empty_list = 0; PyObject *module = 0; PyObject *global_dict = 0; PyObject *empty_dict = 0; PyObject *list; #if PY_VERSION_HEX < 0x03030000 PyObject *py_import; py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); if (!py_import) goto bad; #endif if (from_list) list = from_list; else { empty_list = PyList_New(0); if (!empty_list) goto bad; list = empty_list; } global_dict = PyModule_GetDict(__pyx_m); if (!global_dict) goto bad; empty_dict = PyDict_New(); if (!empty_dict) goto bad; #if PY_VERSION_HEX >= 0x02050000 { #if PY_MAJOR_VERSION >= 3 if (level == -1) { if (strchr(__Pyx_MODULE_NAME, '.')) { #if PY_VERSION_HEX < 0x03030000 PyObject *py_level = PyInt_FromLong(1); if (!py_level) goto bad; module = PyObject_CallFunctionObjArgs(py_import, name, global_dict, empty_dict, list, py_level, NULL); Py_DECREF(py_level); #else module = PyImport_ImportModuleLevelObject( name, global_dict, empty_dict, list, 1); #endif if (!module) { if (!PyErr_ExceptionMatches(PyExc_ImportError)) goto bad; PyErr_Clear(); } } level = 0; /* try absolute import on failure */ } #endif if (!module) { #if PY_VERSION_HEX < 0x03030000 PyObject *py_level = PyInt_FromLong(level); if (!py_level) goto bad; module = PyObject_CallFunctionObjArgs(py_import, name, global_dict, empty_dict, list, py_level, NULL); Py_DECREF(py_level); #else module = PyImport_ImportModuleLevelObject( name, global_dict, empty_dict, list, level); #endif } } #else if (level>0) { PyErr_SetString(PyExc_RuntimeError, "Relative import is not supported for Python <=2.4."); goto bad; } module = PyObject_CallFunctionObjArgs(py_import, name, global_dict, empty_dict, list, NULL); #endif bad: #if PY_VERSION_HEX < 0x03030000 Py_XDECREF(py_import); #endif Py_XDECREF(empty_list); Py_XDECREF(empty_dict); return module; } static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { const int neg_one = (int) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(int) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(int) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); } else if (sizeof(int) <= sizeof(unsigned long long)) { return PyLong_FromUnsignedLongLong((unsigned long long) value); } } else { if (sizeof(int) <= sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(int) <= sizeof(long long)) { return PyLong_FromLongLong((long long) value); } } { int one = 1; int little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&value; return _PyLong_FromByteArray(bytes, sizeof(int), little, !is_unsigned); } } #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func) \ { \ func_type value = func(x); \ if (sizeof(target_type) < sizeof(func_type)) { \ if (unlikely(value != (func_type) (target_type) value)) { \ func_type zero = 0; \ PyErr_SetString(PyExc_OverflowError, \ (is_unsigned && unlikely(value < zero)) ? \ "can't convert negative value to " #target_type : \ "value too large to convert to " #target_type); \ return (target_type) -1; \ } \ } \ return (target_type) value; \ } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE size_t __Pyx_PyInt_As_size_t(PyObject *x) { const size_t neg_one = (size_t) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(size_t) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(size_t, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to size_t"); return (size_t) -1; } return (size_t) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(size_t)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (size_t) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to size_t"); return (size_t) -1; } if (sizeof(size_t) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(size_t, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(size_t) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(size_t, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(size_t)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(size_t) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(size_t) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(size_t) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(size_t, long, PyLong_AsLong) } else if (sizeof(size_t) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(size_t, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else size_t val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (size_t) -1; } } else { size_t val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (size_t) -1; val = __Pyx_PyInt_As_size_t(tmp); Py_DECREF(tmp); return val; } } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { const int neg_one = (int) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(int) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to int"); return (int) -1; } return (int) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(int)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (int) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to int"); return (int) -1; } if (sizeof(int) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(int, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(int) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(int, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(int)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(int) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(int) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(int) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(int, long, PyLong_AsLong) } else if (sizeof(int) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(int, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else int val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (int) -1; } } else { int val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (int) -1; val = __Pyx_PyInt_As_int(tmp); Py_DECREF(tmp); return val; } } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE Py_intptr_t __Pyx_PyInt_As_Py_intptr_t(PyObject *x) { const Py_intptr_t neg_one = (Py_intptr_t) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(Py_intptr_t) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(Py_intptr_t, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to Py_intptr_t"); return (Py_intptr_t) -1; } return (Py_intptr_t) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(Py_intptr_t)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (Py_intptr_t) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to Py_intptr_t"); return (Py_intptr_t) -1; } if (sizeof(Py_intptr_t) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(Py_intptr_t, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(Py_intptr_t) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(Py_intptr_t, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(Py_intptr_t)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(Py_intptr_t) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(Py_intptr_t) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(Py_intptr_t) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(Py_intptr_t, long, PyLong_AsLong) } else if (sizeof(Py_intptr_t) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(Py_intptr_t, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else Py_intptr_t val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (Py_intptr_t) -1; } } else { Py_intptr_t val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (Py_intptr_t) -1; val = __Pyx_PyInt_As_Py_intptr_t(tmp); Py_DECREF(tmp); return val; } } static CYTHON_INLINE PyObject* __Pyx_PyInt_From_unsigned_int(unsigned int value) { const unsigned int neg_one = (unsigned int) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(unsigned int) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(unsigned int) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); } else if (sizeof(unsigned int) <= sizeof(unsigned long long)) { return PyLong_FromUnsignedLongLong((unsigned long long) value); } } else { if (sizeof(unsigned int) <= sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(unsigned int) <= sizeof(long long)) { return PyLong_FromLongLong((long long) value); } } { int one = 1; int little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&value; return _PyLong_FromByteArray(bytes, sizeof(unsigned int), little, !is_unsigned); } } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE unsigned int __Pyx_PyInt_As_unsigned_int(PyObject *x) { const unsigned int neg_one = (unsigned int) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(unsigned int) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(unsigned int, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to unsigned int"); return (unsigned int) -1; } return (unsigned int) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(unsigned int)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (unsigned int) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to unsigned int"); return (unsigned int) -1; } if (sizeof(unsigned int) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(unsigned int) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(unsigned int)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(unsigned int) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(unsigned int) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(unsigned int) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(unsigned int, long, PyLong_AsLong) } else if (sizeof(unsigned int) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(unsigned int, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else unsigned int val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (unsigned int) -1; } } else { unsigned int val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (unsigned int) -1; val = __Pyx_PyInt_As_unsigned_int(tmp); Py_DECREF(tmp); return val; } } #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return ::std::complex< float >(x, y); } #else static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return x + y*(__pyx_t_float_complex)_Complex_I; } #endif #else static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { __pyx_t_float_complex z; z.real = x; z.imag = y; return z; } #endif #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex a, __pyx_t_float_complex b) { return (a.real == b.real) && (a.imag == b.imag); } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; z.real = a.real + b.real; z.imag = a.imag + b.imag; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; z.real = a.real - b.real; z.imag = a.imag - b.imag; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; z.real = a.real * b.real - a.imag * b.imag; z.imag = a.real * b.imag + a.imag * b.real; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; float denom = b.real * b.real + b.imag * b.imag; z.real = (a.real * b.real + a.imag * b.imag) / denom; z.imag = (a.imag * b.real - a.real * b.imag) / denom; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex a) { __pyx_t_float_complex z; z.real = -a.real; z.imag = -a.imag; return z; } static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex a) { return (a.real == 0) && (a.imag == 0); } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex a) { __pyx_t_float_complex z; z.real = a.real; z.imag = -a.imag; return z; } #if 1 static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex z) { #if !defined(HAVE_HYPOT) || defined(_MSC_VER) return sqrtf(z.real*z.real + z.imag*z.imag); #else return hypotf(z.real, z.imag); #endif } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; float r, lnr, theta, z_r, z_theta; if (b.imag == 0 && b.real == (int)b.real) { if (b.real < 0) { float denom = a.real * a.real + a.imag * a.imag; a.real = a.real / denom; a.imag = -a.imag / denom; b.real = -b.real; } switch ((int)b.real) { case 0: z.real = 1; z.imag = 0; return z; case 1: return a; case 2: z = __Pyx_c_prodf(a, a); return __Pyx_c_prodf(a, a); case 3: z = __Pyx_c_prodf(a, a); return __Pyx_c_prodf(z, a); case 4: z = __Pyx_c_prodf(a, a); return __Pyx_c_prodf(z, z); } } if (a.imag == 0) { if (a.real == 0) { return a; } r = a.real; theta = 0; } else { r = __Pyx_c_absf(a); theta = atan2f(a.imag, a.real); } lnr = logf(r); z_r = expf(lnr * b.real - theta * b.imag); z_theta = theta * b.real + lnr * b.imag; z.real = z_r * cosf(z_theta); z.imag = z_r * sinf(z_theta); return z; } #endif #endif #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return ::std::complex< double >(x, y); } #else static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return x + y*(__pyx_t_double_complex)_Complex_I; } #endif #else static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { __pyx_t_double_complex z; z.real = x; z.imag = y; return z; } #endif #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex a, __pyx_t_double_complex b) { return (a.real == b.real) && (a.imag == b.imag); } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; z.real = a.real + b.real; z.imag = a.imag + b.imag; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; z.real = a.real - b.real; z.imag = a.imag - b.imag; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; z.real = a.real * b.real - a.imag * b.imag; z.imag = a.real * b.imag + a.imag * b.real; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; double denom = b.real * b.real + b.imag * b.imag; z.real = (a.real * b.real + a.imag * b.imag) / denom; z.imag = (a.imag * b.real - a.real * b.imag) / denom; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex a) { __pyx_t_double_complex z; z.real = -a.real; z.imag = -a.imag; return z; } static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex a) { return (a.real == 0) && (a.imag == 0); } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex a) { __pyx_t_double_complex z; z.real = a.real; z.imag = -a.imag; return z; } #if 1 static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex z) { #if !defined(HAVE_HYPOT) || defined(_MSC_VER) return sqrt(z.real*z.real + z.imag*z.imag); #else return hypot(z.real, z.imag); #endif } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; double r, lnr, theta, z_r, z_theta; if (b.imag == 0 && b.real == (int)b.real) { if (b.real < 0) { double denom = a.real * a.real + a.imag * a.imag; a.real = a.real / denom; a.imag = -a.imag / denom; b.real = -b.real; } switch ((int)b.real) { case 0: z.real = 1; z.imag = 0; return z; case 1: return a; case 2: z = __Pyx_c_prod(a, a); return __Pyx_c_prod(a, a); case 3: z = __Pyx_c_prod(a, a); return __Pyx_c_prod(z, a); case 4: z = __Pyx_c_prod(a, a); return __Pyx_c_prod(z, z); } } if (a.imag == 0) { if (a.real == 0) { return a; } r = a.real; theta = 0; } else { r = __Pyx_c_abs(a); theta = atan2(a.imag, a.real); } lnr = log(r); z_r = exp(lnr * b.real - theta * b.imag); z_theta = theta * b.real + lnr * b.imag; z.real = z_r * cos(z_theta); z.imag = z_r * sin(z_theta); return z; } #endif #endif static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { const long neg_one = (long) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(long) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(long) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); } else if (sizeof(long) <= sizeof(unsigned long long)) { return PyLong_FromUnsignedLongLong((unsigned long long) value); } } else { if (sizeof(long) <= sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(long) <= sizeof(long long)) { return PyLong_FromLongLong((long long) value); } } { int one = 1; int little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&value; return _PyLong_FromByteArray(bytes, sizeof(long), little, !is_unsigned); } } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { const long neg_one = (long) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if (sizeof(long) < sizeof(long)) { __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to long"); return (long) -1; } return (long) val; } } else #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(long)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return (long) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (unlikely(Py_SIZE(x) < 0)) { PyErr_SetString(PyExc_OverflowError, "can't convert negative value to long"); return (long) -1; } if (sizeof(long) <= sizeof(unsigned long)) { __PYX_VERIFY_RETURN_INT(long, unsigned long, PyLong_AsUnsignedLong) } else if (sizeof(long) <= sizeof(unsigned long long)) { __PYX_VERIFY_RETURN_INT(long, unsigned long long, PyLong_AsUnsignedLongLong) } } else { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS if (sizeof(digit) <= sizeof(long)) { switch (Py_SIZE(x)) { case 0: return 0; case 1: return +(long) ((PyLongObject*)x)->ob_digit[0]; case -1: return -(long) ((PyLongObject*)x)->ob_digit[0]; } } #endif #endif if (sizeof(long) <= sizeof(long)) { __PYX_VERIFY_RETURN_INT(long, long, PyLong_AsLong) } else if (sizeof(long) <= sizeof(long long)) { __PYX_VERIFY_RETURN_INT(long, long long, PyLong_AsLongLong) } } { #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) PyErr_SetString(PyExc_RuntimeError, "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else long val; PyObject *v = __Pyx_PyNumber_Int(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } #endif if (likely(v)) { int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; int ret = _PyLong_AsByteArray((PyLongObject *)v, bytes, sizeof(val), is_little, !is_unsigned); Py_DECREF(v); if (likely(!ret)) return val; } #endif return (long) -1; } } else { long val; PyObject *tmp = __Pyx_PyNumber_Int(x); if (!tmp) return (long) -1; val = __Pyx_PyInt_As_long(tmp); Py_DECREF(tmp); return val; } } static int __Pyx_check_binary_version(void) { char ctversion[4], rtversion[4]; PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) { char message[200]; PyOS_snprintf(message, sizeof(message), "compiletime version %s of module '%.100s' " "does not match runtime version %s", ctversion, __Pyx_MODULE_NAME, rtversion); #if PY_VERSION_HEX < 0x02050000 return PyErr_Warn(NULL, message); #else return PyErr_WarnEx(NULL, message, 1); #endif } return 0; } static int __Pyx_ExportVoidPtr(PyObject *name, void *p, const char *sig) { PyObject *d; PyObject *cobj = 0; d = PyDict_GetItem(__pyx_d, __pyx_n_s_pyx_capi); Py_XINCREF(d); if (!d) { d = PyDict_New(); if (!d) goto bad; if (__Pyx_PyObject_SetAttrStr(__pyx_m, __pyx_n_s_pyx_capi, d) < 0) goto bad; } #if PY_VERSION_HEX >= 0x02070000 && !(PY_MAJOR_VERSION==3 && PY_MINOR_VERSION==0) cobj = PyCapsule_New(p, sig, 0); #else cobj = PyCObject_FromVoidPtrAndDesc(p, (void *)sig, 0); #endif if (!cobj) goto bad; if (PyDict_SetItem(d, name, cobj) < 0) goto bad; Py_DECREF(cobj); Py_DECREF(d); return 0; bad: Py_XDECREF(cobj); Py_XDECREF(d); return -1; } #ifndef __PYX_HAVE_RT_ImportModule #define __PYX_HAVE_RT_ImportModule static PyObject *__Pyx_ImportModule(const char *name) { PyObject *py_name = 0; PyObject *py_module = 0; py_name = __Pyx_PyIdentifier_FromString(name); if (!py_name) goto bad; py_module = PyImport_Import(py_name); Py_DECREF(py_name); return py_module; bad: Py_XDECREF(py_name); return 0; } #endif #ifndef __PYX_HAVE_RT_ImportType #define __PYX_HAVE_RT_ImportType static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict) { PyObject *py_module = 0; PyObject *result = 0; PyObject *py_name = 0; char warning[200]; Py_ssize_t basicsize; #ifdef Py_LIMITED_API PyObject *py_basicsize; #endif py_module = __Pyx_ImportModule(module_name); if (!py_module) goto bad; py_name = __Pyx_PyIdentifier_FromString(class_name); if (!py_name) goto bad; result = PyObject_GetAttr(py_module, py_name); Py_DECREF(py_name); py_name = 0; Py_DECREF(py_module); py_module = 0; if (!result) goto bad; if (!PyType_Check(result)) { PyErr_Format(PyExc_TypeError, "%.200s.%.200s is not a type object", module_name, class_name); goto bad; } #ifndef Py_LIMITED_API basicsize = ((PyTypeObject *)result)->tp_basicsize; #else py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); if (!py_basicsize) goto bad; basicsize = PyLong_AsSsize_t(py_basicsize); Py_DECREF(py_basicsize); py_basicsize = 0; if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) goto bad; #endif if (!strict && (size_t)basicsize > size) { PyOS_snprintf(warning, sizeof(warning), "%s.%s size changed, may indicate binary incompatibility", module_name, class_name); #if PY_VERSION_HEX < 0x02050000 if (PyErr_Warn(NULL, warning) < 0) goto bad; #else if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad; #endif } else if ((size_t)basicsize != size) { PyErr_Format(PyExc_ValueError, "%.200s.%.200s has the wrong size, try recompiling", module_name, class_name); goto bad; } return (PyTypeObject *)result; bad: Py_XDECREF(py_module); Py_XDECREF(result); return NULL; } #endif static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { int start = 0, mid = 0, end = count - 1; if (end >= 0 && code_line > entries[end].code_line) { return count; } while (start < end) { mid = (start + end) / 2; if (code_line < entries[mid].code_line) { end = mid; } else if (code_line > entries[mid].code_line) { start = mid + 1; } else { return mid; } } if (code_line <= entries[mid].code_line) { return mid; } else { return mid + 1; } } static PyCodeObject *__pyx_find_code_object(int code_line) { PyCodeObject* code_object; int pos; if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) { return NULL; } pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) { return NULL; } code_object = __pyx_code_cache.entries[pos].code_object; Py_INCREF(code_object); return code_object; } static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { int pos, i; __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries; if (unlikely(!code_line)) { return; } if (unlikely(!entries)) { entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry)); if (likely(entries)) { __pyx_code_cache.entries = entries; __pyx_code_cache.max_count = 64; __pyx_code_cache.count = 1; entries[0].code_line = code_line; entries[0].code_object = code_object; Py_INCREF(code_object); } return; } pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) { PyCodeObject* tmp = entries[pos].code_object; entries[pos].code_object = code_object; Py_DECREF(tmp); return; } if (__pyx_code_cache.count == __pyx_code_cache.max_count) { int new_max = __pyx_code_cache.max_count + 64; entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc( __pyx_code_cache.entries, new_max*sizeof(__Pyx_CodeObjectCacheEntry)); if (unlikely(!entries)) { return; } __pyx_code_cache.entries = entries; __pyx_code_cache.max_count = new_max; } for (i=__pyx_code_cache.count; i>pos; i--) { entries[i] = entries[i-1]; } entries[pos].code_line = code_line; entries[pos].code_object = code_object; __pyx_code_cache.count++; Py_INCREF(code_object); } #include "compile.h" #include "frameobject.h" #include "traceback.h" static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = 0; PyObject *py_srcfile = 0; PyObject *py_funcname = 0; #if PY_MAJOR_VERSION < 3 py_srcfile = PyString_FromString(filename); #else py_srcfile = PyUnicode_FromString(filename); #endif if (!py_srcfile) goto bad; if (c_line) { #if PY_MAJOR_VERSION < 3 py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); #else py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); #endif } else { #if PY_MAJOR_VERSION < 3 py_funcname = PyString_FromString(funcname); #else py_funcname = PyUnicode_FromString(funcname); #endif } if (!py_funcname) goto bad; py_code = __Pyx_PyCode_New( 0, /*int argcount,*/ 0, /*int kwonlyargcount,*/ 0, /*int nlocals,*/ 0, /*int stacksize,*/ 0, /*int flags,*/ __pyx_empty_bytes, /*PyObject *code,*/ __pyx_empty_tuple, /*PyObject *consts,*/ __pyx_empty_tuple, /*PyObject *names,*/ __pyx_empty_tuple, /*PyObject *varnames,*/ __pyx_empty_tuple, /*PyObject *freevars,*/ __pyx_empty_tuple, /*PyObject *cellvars,*/ py_srcfile, /*PyObject *filename,*/ py_funcname, /*PyObject *name,*/ py_line, /*int firstlineno,*/ __pyx_empty_bytes /*PyObject *lnotab*/ ); Py_DECREF(py_srcfile); Py_DECREF(py_funcname); return py_code; bad: Py_XDECREF(py_srcfile); Py_XDECREF(py_funcname); return NULL; } static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = 0; PyObject *py_globals = 0; PyFrameObject *py_frame = 0; py_code = __pyx_find_code_object(c_line ? c_line : py_line); if (!py_code) { py_code = __Pyx_CreateCodeObjectForTraceback( funcname, c_line, py_line, filename); if (!py_code) goto bad; __pyx_insert_code_object(c_line ? c_line : py_line, py_code); } py_globals = PyModule_GetDict(__pyx_m); if (!py_globals) goto bad; py_frame = PyFrame_New( PyThreadState_GET(), /*PyThreadState *tstate,*/ py_code, /*PyCodeObject *code,*/ py_globals, /*PyObject *globals,*/ 0 /*PyObject *locals*/ ); if (!py_frame) goto bad; py_frame->f_lineno = py_line; PyTraceBack_Here(py_frame); bad: Py_XDECREF(py_code); Py_XDECREF(py_frame); } static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { while (t->p) { #if PY_MAJOR_VERSION < 3 if (t->is_unicode) { *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL); } else if (t->intern) { *t->p = PyString_InternFromString(t->s); } else { *t->p = PyString_FromStringAndSize(t->s, t->n - 1); } #else /* Python 3+ has unicode identifiers */ if (t->is_unicode | t->is_str) { if (t->intern) { *t->p = PyUnicode_InternFromString(t->s); } else if (t->encoding) { *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL); } else { *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1); } } else { *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1); } #endif if (!*t->p) return -1; ++t; } return 0; } static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { return __Pyx_PyUnicode_FromStringAndSize(c_str, strlen(c_str)); } static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) { Py_ssize_t ignore; return __Pyx_PyObject_AsStringAndSize(o, &ignore); } static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT if ( #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII __Pyx_sys_getdefaultencoding_not_ascii && #endif PyUnicode_Check(o)) { #if PY_VERSION_HEX < 0x03030000 char* defenc_c; PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL); if (!defenc) return NULL; defenc_c = PyBytes_AS_STRING(defenc); #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII { char* end = defenc_c + PyBytes_GET_SIZE(defenc); char* c; for (c = defenc_c; c < end; c++) { if ((unsigned char) (*c) >= 128) { PyUnicode_AsASCIIString(o); return NULL; } } } #endif /*__PYX_DEFAULT_STRING_ENCODING_IS_ASCII*/ *length = PyBytes_GET_SIZE(defenc); return defenc_c; #else /* PY_VERSION_HEX < 0x03030000 */ if (PyUnicode_READY(o) == -1) return NULL; #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII if (PyUnicode_IS_ASCII(o)) { *length = PyUnicode_GET_LENGTH(o); return PyUnicode_AsUTF8(o); } else { PyUnicode_AsASCIIString(o); return NULL; } #else /* __PYX_DEFAULT_STRING_ENCODING_IS_ASCII */ return PyUnicode_AsUTF8AndSize(o, length); #endif /* __PYX_DEFAULT_STRING_ENCODING_IS_ASCII */ #endif /* PY_VERSION_HEX < 0x03030000 */ } else #endif /* __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT */ #if !CYTHON_COMPILING_IN_PYPY #if PY_VERSION_HEX >= 0x02060000 if (PyByteArray_Check(o)) { *length = PyByteArray_GET_SIZE(o); return PyByteArray_AS_STRING(o); } else #endif #endif { char* result; int r = PyBytes_AsStringAndSize(o, &result, length); if (unlikely(r < 0)) { return NULL; } else { return result; } } } static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { int is_true = x == Py_True; if (is_true | (x == Py_False) | (x == Py_None)) return is_true; else return PyObject_IsTrue(x); } static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x) { PyNumberMethods *m; const char *name = NULL; PyObject *res = NULL; #if PY_MAJOR_VERSION < 3 if (PyInt_Check(x) || PyLong_Check(x)) #else if (PyLong_Check(x)) #endif return Py_INCREF(x), x; m = Py_TYPE(x)->tp_as_number; #if PY_MAJOR_VERSION < 3 if (m && m->nb_int) { name = "int"; res = PyNumber_Int(x); } else if (m && m->nb_long) { name = "long"; res = PyNumber_Long(x); } #else if (m && m->nb_int) { name = "int"; res = PyNumber_Long(x); } #endif if (res) { #if PY_MAJOR_VERSION < 3 if (!PyInt_Check(res) && !PyLong_Check(res)) { #else if (!PyLong_Check(res)) { #endif PyErr_Format(PyExc_TypeError, "__%.4s__ returned non-%.4s (type %.200s)", name, name, Py_TYPE(res)->tp_name); Py_DECREF(res); return NULL; } } else if (!PyErr_Occurred()) { PyErr_SetString(PyExc_TypeError, "an integer is required"); } return res; } #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS #include "longintrepr.h" #endif #endif static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { Py_ssize_t ival; PyObject *x; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_CheckExact(b))) return PyInt_AS_LONG(b); #endif if (likely(PyLong_CheckExact(b))) { #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 #if CYTHON_USE_PYLONG_INTERNALS switch (Py_SIZE(b)) { case -1: return -(sdigit)((PyLongObject*)b)->ob_digit[0]; case 0: return 0; case 1: return ((PyLongObject*)b)->ob_digit[0]; } #endif #endif #if PY_VERSION_HEX < 0x02060000 return PyInt_AsSsize_t(b); #else return PyLong_AsSsize_t(b); #endif } x = PyNumber_Index(b); if (!x) return -1; ival = PyInt_AsSsize_t(x); Py_DECREF(x); return ival; } static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { #if PY_VERSION_HEX < 0x02050000 if (ival <= LONG_MAX) return PyInt_FromLong((long)ival); else { unsigned char *bytes = (unsigned char *) &ival; int one = 1; int little = (int)*(unsigned char*)&one; return _PyLong_FromByteArray(bytes, sizeof(size_t), little, 0); } #else return PyInt_FromSize_t(ival); #endif } #endif /* Py_PYTHON_H */ pyNFFT-1.3.2/PKG-INFO0000644000175000017500000000370412366200152015735 0ustar gv10-debiangv10-debian00000000000000Metadata-Version: 1.1 Name: pyNFFT Version: 1.3.2 Summary: A pythonic wrapper around NFFT Home-page: https://github.com/ghisvail/pyNFFT.git Author: Ghislain Vaillant Author-email: ghisvail@gmail.com License: UNKNOWN Description: "The NFFT is a C subroutine library for computing the nonequispaced discrete Fourier transform (NDFT) in one or more dimensions, of arbitrary input size, and of complex data." The NFFT library is licensed under GPLv2 and available at: http://www-user.tu-chemnitz.de/~potts/nfft/index.php This wrapper provides a somewhat Pythonic access to some of the core NFFT library functionalities and is largely inspired from the pyFFTW project developped by Henry Gomersall (http://hgomersall.github.io/pyFFTW/). This project is still work in progress and is still considered beta quality. In particular, the API is not yet frozen and is likely to change as the development continues. Please consult the documentation and changelog for more information. Platform: Linux Platform: Unix Classifier: Programming Language :: Cython Classifier: Programming Language :: Python Classifier: Programming Language :: Python :: 2 Classifier: Programming Language :: Python :: 2.6 Classifier: Programming Language :: Python :: 2.7 Classifier: Programming Language :: Python :: 3 Classifier: Programming Language :: Python :: 3.2 Classifier: Programming Language :: Python :: 3.3 Classifier: Programming Language :: Python :: 3.4 Classifier: Development Status :: 4 - Beta Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+) Classifier: Operating System :: POSIX :: Linux Classifier: Intended Audience :: Developers Classifier: Intended Audience :: Science/Research Classifier: Topic :: Scientific/Engineering Classifier: Topic :: Scientific/Engineering :: Mathematics Classifier: Topic :: Multimedia :: Sound/Audio :: Analysis pyNFFT-1.3.2/setup.py0000644000175000017500000002347312366200055016361 0ustar gv10-debiangv10-debian00000000000000#!/usr/bin/env python # -*- coding: utf-8 -*- # # Copyright (C) 2013 Ghislain Vaillant # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program. If not, see . import os import sys import subprocess # Define global path variables setup_dir = dir = os.path.dirname(os.path.abspath(__file__)) package_name = 'pynfft' package_dir = os.path.join(setup_dir, package_name) # Define utility functions to build the extensions def get_common_extension_args(): import numpy common_extension_args = dict( libraries=['nfft3_threads', 'nfft3', 'fftw3_threads', 'fftw3', 'm'], library_dirs=[], include_dirs=[numpy.get_include()], extra_compile_args='-O3 -fomit-frame-pointer -malign-double ' '-fstrict-aliasing -ffast-math'.split(), ) return common_extension_args def get_extensions(): from distutils.extension import Extension ext_modules = [] common_extension_args = get_common_extension_args() ext_modules.append(Extension( name=package_name+'.nfft', sources=[os.path.join(package_dir, 'nfft.c')], **common_extension_args ) ) ext_modules.append(Extension( name=package_name+'.solver', sources=[os.path.join(package_dir, 'solver.c')], **common_extension_args ) ) ext_modules.append(Extension( name=package_name+'.util', sources=[os.path.join(package_dir, 'util.c')], **common_extension_args ) ) return ext_modules def get_cython_extensions(): from distutils.extension import Extension from Cython.Build import cythonize ext_modules = [] common_extension_args = get_common_extension_args() ext_modules.append(Extension( name=package_name+'.nfft', sources=[os.path.join(package_dir, 'nfft.pyx')], **common_extension_args ) ) ext_modules.append(Extension( name=package_name+'.solver', sources=[os.path.join(package_dir, 'solver.pyx')], **common_extension_args ) ) ext_modules.append(Extension( name=package_name+'.util', sources=[os.path.join(package_dir, 'util.pyx')], **common_extension_args ) ) return cythonize(ext_modules) # BEFORE importing distutils, remove MANIFEST. distutils doesn't properly # update it when the contents of directories change. if os.path.exists('MANIFEST'): os.remove('MANIFEST') # Define custom clean command from distutils.core import Command class CleanCommand(Command): """Custom distutils command to clean the .so and .pyc files.""" user_options = [("all", "a", "")] def initialize_options(self): self.all = True self._clean_me = [] self._clean_trees = [] self._clean_exclude = [] # clean Cython generated files and cache for root, dirs, files in os.walk(package_dir): for f in files: if f in self._clean_exclude: continue if os.path.splitext(f)[-1] in ('.pyc', '.so', '.o', '.pyo', '.pyd', '.c', '.orig'): self._clean_me.append(os.path.join(root, f)) for d in dirs: if d == '__pycache__': self._clean_trees.append(os.path.join(root, d)) # clean build and sdist directories in root for d in ('build', 'dist'): if os.path.exists(d): self._clean_trees.append(d) def finalize_options(self): pass def run(self): for clean_me in self._clean_me: try: os.unlink(clean_me) except Exception: pass for clean_tree in self._clean_trees: try: shutil.rmtree(clean_tree) except Exception: pass cmdclass = {'clean': CleanCommand} LONG_DESCRIPTION = '''"The NFFT is a C subroutine library for computing the nonequispaced discrete Fourier transform (NDFT) in one or more dimensions, of arbitrary input size, and of complex data." The NFFT library is licensed under GPLv2 and available at: http://www-user.tu-chemnitz.de/~potts/nfft/index.php This wrapper provides a somewhat Pythonic access to some of the core NFFT library functionalities and is largely inspired from the pyFFTW project developped by Henry Gomersall (http://hgomersall.github.io/pyFFTW/). This project is still work in progress and is still considered beta quality. In particular, the API is not yet frozen and is likely to change as the development continues. Please consult the documentation and changelog for more information.''' CLASSIFIERS = [ 'Programming Language :: Cython', 'Programming Language :: Python', 'Programming Language :: Python :: 2', 'Programming Language :: Python :: 2.6', 'Programming Language :: Python :: 2.7', 'Programming Language :: Python :: 3', 'Programming Language :: Python :: 3.2', 'Programming Language :: Python :: 3.3', 'Programming Language :: Python :: 3.4', 'Development Status :: 4 - Beta', 'License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)', 'Operating System :: POSIX :: Linux', 'Intended Audience :: Developers', 'Intended Audience :: Science/Research', 'Topic :: Scientific/Engineering', 'Topic :: Scientific/Engineering :: Mathematics', 'Topic :: Multimedia :: Sound/Audio :: Analysis', ] MAJOR = 1 MINOR = 3 MICRO = 2 ISRELEASED = True VERSION = '%d.%d.%d' % (MAJOR, MINOR, MICRO) # borrowed from scipy def git_version(): def _minimal_ext_cmd(cmd): # construct minimal environment env = {} for k in ['SYSTEMROOT', 'PATH']: v = os.environ.get(k) if v is not None: env[k] = v # LANGUAGE is used on win32 env['LANGUAGE'] = 'C' env['LANG'] = 'C' env['LC_ALL'] = 'C' out = subprocess.Popen(cmd, stdout = subprocess.PIPE, env=env).communicate()[0] return out try: out = _minimal_ext_cmd(['git', 'rev-parse', 'HEAD']) GIT_REVISION = out.strip().decode('ascii') except OSError: GIT_REVISION = "Unknown" return GIT_REVISION # borrowed from scipy def get_version_info(): FULLVERSION = VERSION if os.path.exists('.git'): GIT_REVISION = git_version() elif os.path.exists('pynfft/version.py'): # must be a source distribution, use existing version file # load it as a separate module in order not to load __init__.py import imp version = imp.load_source('pynfft.version', 'pynfft/version.py') GIT_REVISION = version.git_revision else: GIT_REVISION = "Unknown" if not ISRELEASED: FULLVERSION += '.dev-' + GIT_REVISION[:7] return FULLVERSION, GIT_REVISION # borrowed from scipy def write_version_py(filename='pynfft/version.py'): cnt = """ # THIS FILE IS GENERATED FROM SETUP.PY short_version = '%(version)s' version = '%(version)s' full_version = '%(full_version)s' git_revision = '%(git_revision)s' release = %(isrelease)s if not release: version = full_version """ FULLVERSION, GIT_REVISION = get_version_info() f = open(filename, 'w') try: f.write(cnt % {'version': VERSION, 'full_version' : FULLVERSION, 'git_revision' : GIT_REVISION, 'isrelease': str(ISRELEASED)}) finally: f.close() def setup_package(): # Use setuptools if available try: from setuptools import setup except ImportError: from distutils.core import setup # Get current version FULLVERSION, GIT_REVISION = get_version_info() # Refresh version file write_version_py() # Figure out whether to add ``*_requires = ['numpy']``. build_requires = [] try: import numpy except: build_requires = ['numpy>=1.6',] # Common setup args setup_args = dict( name = 'pyNFFT', version = FULLVERSION, author = 'Ghislain Vaillant', author_email = 'ghisvail@gmail.com', description = 'A pythonic wrapper around NFFT', long_description = LONG_DESCRIPTION, url = 'https://github.com/ghisvail/pyNFFT.git', cmdclass = cmdclass, classifiers = CLASSIFIERS, platforms=['Linux', 'Unix'], test_suite='nose.collector', setup_requires = build_requires, install_requires = build_requires, ) if len(sys.argv) >= 2 and ('--help' in sys.argv[1:] or sys.argv[1] in ('--help-commands', 'egg_info', '--version', 'clean')): # For these actions, NumPy is not required. pass else: try: from Cython.Distutils import build_ext have_cython = True except: have_cython = False if have_cython: extensions = get_cython_extensions() else: extensions = get_extensions() setup_args['packages'] = ['pynfft', 'pynfft.tests'] setup_args['ext_modules'] = extensions setup(**setup_args) if __name__ == '__main__': setup_package() pyNFFT-1.3.2/setup.cfg0000644000175000017500000000026412366200152016457 0ustar gv10-debiangv10-debian00000000000000[build_sphinx] source-dir = doc/source build-dir = doc/build all_files = 1 [upload_sphinx] upload-dir = doc/build/html [egg_info] tag_build = tag_date = 0 tag_svn_revision = 0 pyNFFT-1.3.2/CHANGELOG.txt0000644000175000017500000001004012366173712016672 0ustar gv10-debiangv10-debian00000000000000Changelog ========= Changes in version 1.3.2 ------------------------ * setup: re-introduce proper clean target * setup: remove dependency on numpy for some targets * add PEP-396 compliant version Changes in version 1.3.1 ------------------------ * setup: fix build from cythonized sources * setup: remove obsolete custom clean command Changes in version 1.3 ---------------------- * nfft: major API changes * nfft: add more safeguards against wrong choices of parameters * solver: minor API changes * solver: fix systematic segfault issue * solver: expose all internals via RO or RW properties * tests: test suite has been redesigned, now uses nosetests Changes in version 1.2.2 ------------------------ * fix bug on property setters in NFFT class Changes in version 1.2.1 ------------------------ * fix bug related to absolute import * fix test case not working with Python 3 Changes in version 1.2 ---------------------- * code refactoring, prepare for move to multi-precision version of NFFT * break support for old 1.0.x API * add option to precompute at construct time Changes in version 1.1.1 ------------------------ * simplify build system * add support for pip dependencies * simplify documentation tree * add option for generating documentation in build system * source distribution is now embedding the documentation Changes in version 1.1 ---------------------- * PEP 440 compliant version string * more pythonic API, breaks compatibility with 1.0.x * documentation update Changes in version 1.0.1 ------------------------ * update installation instructions * change registration of cleanup routine to use Py_AtExit Changes in version 1.0 ---------------------- * simplify code base * pynfft.nfft and pynfft.solver moved to pynfft * revert support for multiple floating precision * fix missing documentation for the solver Changes in version 0.6 ---------------------- * pynfft.nfft: enable openmp support Changes in version 0.5 ---------------------- * pynfft.nfft: rewrite NFFT class internals to support multiple floating point precision, coming in a future version of libnfft3 * Documentation: first draft of the tutorial section Changes in version 0.4.1 ------------------------ * New simplified test suite. Changes in version 0.4 ---------------------- * Improved flag management: NFFT now only accepts the list of supported flags listed in its documentaton. * pynfft.util: utility functions listed in nfft3util.h. Only, the random initializers and Voronoi weights computation functions have been wrapped. * Changelog is no longer part of the sphinx tree. Changes in version 0.3.1 ------------------------ * Fixed issue #1: crash in test_nfft due to use of MALLOC flags Changes in version 0.3 ---------------------- * Improve precomputation flag management in NFFT and Solver classes * Various code improvements * Update documentation for all modules Changes in version 0.2.4 ------------------------ * Add sphinx documentation Changes in version 0.2.3 ------------------------ * Level-up Solver class with the improvement made on NFFT * Update test suite for pynfft.nfft Changes in version 0.2.2 ------------------------ * Completed switch to non-malloc'd arrays for x, f and f_hat. These are now managed by internal or external numpy arrays * Remove management of obsolete MALLOC flags * Fix broken test for non-contiguousness for external arrays Changes in version 0.2.1 ------------------------ * Added experimental support for external python arrays, which can replace the internal malloc'd x, f and f_hat Changes in version 0.2 ------------------------ * Added support for the solver component of the NFFT library Changes in version 0.1.1 ------------------------ * Added non-complete test coverage for pynfft.nfft Version 0.1 ----------- * Initial release. Experimental support for the nfft component of the NFFT library pyNFFT-1.3.2/COPYING.txt0000644000175000017500000010451412341611030016504 0ustar gv10-debiangv10-debian00000000000000 GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The GNU General Public License is a free, copyleft license for software and other kinds of works. The licenses for most software and other practical works are designed to take away your freedom to share and change the works. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change all versions of a program--to make sure it remains free software for all its users. We, the Free Software Foundation, use the GNU General Public License for most of our software; it applies also to any other work released this way by its authors. You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not price. 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But first, please read . pyNFFT-1.3.2/doc/0000755000175000017500000000000012366200152015401 5ustar gv10-debiangv10-debian00000000000000pyNFFT-1.3.2/doc/source/0000755000175000017500000000000012366200152016701 5ustar gv10-debiangv10-debian00000000000000pyNFFT-1.3.2/doc/source/conf.py0000644000175000017500000001710612366173712020220 0ustar gv10-debiangv10-debian00000000000000# -*- coding: utf-8 -*- # # pyNFFT documentation build configuration file, created by # sphinx-quickstart on Fri Nov 8 19:44:07 2013. # # This file is execfile()d with the current directory set to its containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. import sys, os # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. sys.path.insert(0, os.path.abspath('../..')) # -- General configuration ----------------------------------------------------- # If your documentation needs a minimal Sphinx version, state it here. #needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be extensions # coming with Sphinx (named 'sphinx.ext.*') or your custom ones. extensions = ['sphinx.ext.autodoc'] # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix of source filenames. source_suffix = '.rst' # The encoding of source files. #source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'pyNFFT' copyright = u'2013, Ghislain Vaillant' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. version = '1.3' # The full version, including alpha/beta/rc tags. release = '1.3.2' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. #language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: #today = '' # Else, today_fmt is used as the format for a strftime call. #today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. exclude_patterns = [] # The reST default role (used for this markup: `text`) to use for all documents. #default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. #add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). #add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. #show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. #modindex_common_prefix = [] # -- Options for HTML output --------------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. html_theme = 'default' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. #html_theme_options = {} # Add any paths that contain custom themes here, relative to this directory. #html_theme_path = [] # The name for this set of Sphinx documents. If None, it defaults to # " v documentation". #html_title = None # A shorter title for the navigation bar. 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List of tuples # (source start file, target name, title, author, documentclass [howto/manual]). latex_documents = [ ('index', 'pyNFFT.tex', u'pyNFFT Documentation', u'Ghislain Vaillant', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. #latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. #latex_use_parts = False # If true, show page references after internal links. #latex_show_pagerefs = False # If true, show URL addresses after external links. #latex_show_urls = False # Documents to append as an appendix to all manuals. #latex_appendices = [] # If false, no module index is generated. #latex_domain_indices = True # -- Options for manual page output -------------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ ('index', 'pynfft', u'pyNFFT Documentation', [u'Ghislain Vaillant'], 1) ] # If true, show URL addresses after external links. #man_show_urls = False # -- Options for Texinfo output ------------------------------------------------ # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ ('index', 'pyNFFT', u'pyNFFT Documentation', u'Ghislain Vaillant', 'pyNFFT', 'One line description of project.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. #texinfo_appendices = [] # If false, no module index is generated. #texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. #texinfo_show_urls = 'footnote' pyNFFT-1.3.2/doc/source/api/0000755000175000017500000000000012366200152017452 5ustar gv10-debiangv10-debian00000000000000pyNFFT-1.3.2/doc/source/api/nfft.rst0000644000175000017500000000027312366173704021157 0ustar gv10-debiangv10-debian00000000000000``pynfft.nfft`` - core NFFT functionalities =========================================== .. automodule:: pynfft.nfft NFFT Class ---------- .. autoclass:: pynfft.nfft.NFFT :members: pyNFFT-1.3.2/doc/source/api/solver.rst0000644000175000017500000000033012366173704021526 0ustar gv10-debiangv10-debian00000000000000``pynfft.solver`` - iterative solver for inverse NFFT ===================================================== .. automodule:: pynfft.solver Solver class ------------ .. autoclass:: pynfft.solver.Solver :members: pyNFFT-1.3.2/doc/source/api/util.rst0000644000175000017500000000141712341611030021156 0ustar gv10-debiangv10-debian00000000000000``pynfft.util`` - Utility functions =================================== .. automodule:: pynfft.util Functions used for initialization of :class:`pynfft.NFFT` attributes in test scripts. For instance:: >>> from pynfft.util import vrand_unit_complex, vrand_shifted_unit_double >>> x = np.empty(20, dtype=np.float64) >>> vrand_shifted_unit_double(x) >>> f_hat = np.empty(16, dtype=np.complex128) >>> vrand_unit_complex(f_hat) .. autofunction:: pynfft.util.vrand_unit_complex(x) .. autofunction:: pynfft.util.vrand_shifted_unit_double(x) Functions used for computing the density compensation weights necessary for the iterative solver and adjoint NFFT. .. autofunction:: pynfft.util.voronoi_weights_1d(w, x) .. autofunction:: pynfft.util.voronoi_weights_S2(w, xi) pyNFFT-1.3.2/doc/source/index.rst0000644000175000017500000000320412366173704020555 0ustar gv10-debiangv10-debian00000000000000.. pyNFFT documentation master file, created by sphinx-quickstart on Thu May 30 19:37:18 2013. You can adapt this file completely to your liking, but it should at least contain the root `toctree` directive. Welcome to pyNFFT's documentation! ================================== Introduction ------------ **pyNFFT** is a set of Pythonic wrapper classes around the `NFFT library `_. The aim is to provide access to the core functionalities of the library using a more straightforward instantiation through Python classes, while keeping similar naming conventions to the C-library structures and routines. Right now, only the NFFT and solver components of the library are supported. Support for other components `may` come in the future, but is conditionned by the author's need for them. If you're interested in getting these components wrapped as well, please feel free to contribute. The design of the pyNFFT package assumes that the NFFT has been **compiled with OpenMP support**. The core interface of the NFFT is provided by the unified class, :class:`pynfft.nfft.NFFT`. The solver interface is in :class:`pynfft.solver.Solver`. A comprehensive unittest suite is included with the source on the repository. The suite will be updated as more functionalities get introducted. Content ------- .. toctree:: :maxdepth: 2 tutorial.rst api.rst About this documentation ------------------------ This documentation is generated using the `Sphinx `_ documentation generator. Indices and tables ================== * :ref:`genindex` * :ref:`modindex` * :ref:`search` pyNFFT-1.3.2/doc/source/tutorial.rst0000644000175000017500000001561612366173704021323 0ustar gv10-debiangv10-debian00000000000000Using the NFFT ============== In this tutorial, we assume that you are already familiar with the `non-uniform discrete Fourier transform `_ and the `NFFT library `_ used for fast computation of NDFTs. Like the `FFTW library `_, the NFFT library relies on a specific data structure, called a plan, which stores all the data required for efficient computation and re-use of the NDFT. Each plan is tailored for a specific transform, depending on the geometry, level of precomputation and design parameters. The `NFFT manual `_ contains comprehensive explanation on the NFFT implementation. The pyNFFT package provides a set of Pythonic wrappers around the main data structures of the NFFT library. Use of Python wrappers allows to simplify the manipulation of the library, whilst benefiting from the significant speedup provided by its C-implementation. Although the NFFT library supports many more applications, only the NFFT and iterative solver components have been wrapped so far. This tutorial is split into three main sections. In the first one, the general workflow for using the core of the :class:`pynfft.NFFT` class will be explained. Then, the :class:`pynfft.NFFT` class API will be detailed and illustrated with examples for the univariate and multivariate cases. Finally, the :class:`pynfft.Solver` iterative solver class will be briefly presented. .. _workflow: Workflow -------- For users already familiar with the NFFT C-library, the workflow is basically the same. It consists in the following three steps: #. instantiation #. precomputation #. execution In step 1, information such as the geometry of the transform or the desired level of precomputation is provided to the constructor, which takes care of allocating the internal arrays of the plan. Precomputation (step 2) can be started once the location of the non-uniform nodes have been set to the plan. Depending on the size of the transform and level of precomputation, this step may take some time. Finally (step 3), the forward or adjoint NFFT is computed by first setting the input data in either `f_hat` (forward) or `f` (adjoint), calling the corresponding function, and reading the output in `f` (forward) or `f_hat` (adjoint). .. _using_nfft: Using the NFFT -------------- The core of this library is encapsulated in the :class:`pyfftw.NFFT class`. **instantiation** The bare minimum to instantiate a new :class:`pynfft.NFFT` plan is to specify the geometry to the transform, i.e. the shape of the matrix containing the uniform data `N` and the number of non-uniform nodes `M`. >>> from pynfft.nfft import NFFT >>> plan = NFFT([16, 16], 92) >>> print plan.M 96 >>> print plan.N (16, 16) More control over the precision, storage and speed of the NFFT can be gained by overriding the default design parameters `m`, `n` and `flags`. For more information, please consult the `NFFT manual `_. **precomputation** Precomputation *must* be performed before calling any of the transforms. The user can manually set the nodes of the NFFT object using the :attr:`pynfft.nfft.NFFT.x` attribute before calling the :meth:`pynfft.nfft.NFFT.precompute` method. >>> plan.x = x >>> plan.precompute() **execution** The actual forward and adjoint NFFT are performed by calling the :meth:`pynfft.nfft.NFFT.trafo` and :meth:`pynfft.nfft.NFFT.adjoint` methods. >>> # forward transform >>> plan.f_hat = f_hat >>> f = plan.trafo() >>> # adjoint transform >>> plan.f = f >>> f_hat = plan.adjoint() .. _using_solver: Using the iterative solver -------------------------- **instantiation** The instantiation of a :class:`pynfft.solver.Solver` object requires an instance of :class:`pynfft.nfft.NFFT`. The following code shows you a simple example: >>> from pynfft import NFFT, Solver >>> plan = NFFT(N, M) >>> infft = Solver(plan) It is strongly recommended to use an already *precomputed* :class:`pynfft.nfft.NFFT` object to instantiate a :class:`pynfft.solver.Solver` object, or at the very least, make sure to call its precompute method before using solver. Since the solver will typically run several iterations before converging to a stable solution, it is also strongly encourage to use the maximum level of precomputation to speed-up each call to the NFFT. Please check the paragraph regarding the choice of precomputation flags for the :class:`pynfft.nfft.NFFT`. By default, the :class:`pynfft.solver.Solver` class uses the Conjugate Gradient of the first kind method (CGNR flag). This may be overriden in the constructor: >>> infft = Solver(plan, flags='CGNE') Convergence to a stable solution can be significantly speed-up using the right pre-conditioning weights. These can accessed by the :attr:`pynfft.solver.Solver.w` and :attr:`pynfft.solver.Solver.w_hat` attributes. By default, these weights are set to 1. >>> infft = Solver(plan) >>> infft.w = w **using the solver** Before iterating, the solver has to be intialized. As a reminder, make sure the :class:`pynfft.nfft.NFFT` object used to instantiate the solver has been *precomputed*. Otherwise, the solver will be in an undefined state and will not behave properly. Initialization of the solver is performed by first setting the non-uniform samples :attr:`pynfft.solver.Solver.y`, an initial guess of the solution :attr:`pynfft.solver.Solver.f_hat_iter` and then calling the :meth:`pynfft.solver.Solver.before_loop` method. >>> infft.y = y >>> infft.f_hat_iter = f_hat_iter >>> infft.before_loop() By default, the initial guess of the solution is set to 0. After initialization of the solver, a single iteration can be performed by calling the :meth:`pynfft.solver.Solver.loop_one_step` method. With each iteration, the current solution is written in the :attr:`pynfft.solver.Solver.f_hat_iter` attribute. >>> infft.loop_one_step() >>> print infft.f_hat_iter >>> infft.loop_one_step() >>> print infft.f_hat_iter The :class:`pynfft.Solver` class only supports one iteration at a time. It is at the discretion to implement the desired stopping condition, based for instance on a maximum iteration count or a threshold value on the residuals. The residuals can be read in the :attr:`pynfft.solver.Solver.r_iter` attribute. Below are two simple examples: - with a maximum number of iterations: >>> niter = 10 # set number of iterations to 10 >>> for iiter in range(niter): >>> infft.loop_one_step() - with a threshold value: >>> threshold = 1e-3 >>> try: >>> while True: >>> infft.loop_one_step() >>> if(np.all(infft.r_iter < threshold)): >>> raise StopCondition >>> except StopCondition: >>> # rest of the algorithm pyNFFT-1.3.2/doc/source/api.rst0000644000175000017500000000012712366173704020220 0ustar gv10-debiangv10-debian00000000000000API Reference ************* .. toctree:: /api/nfft /api/solver /api/util pyNFFT-1.3.2/doc/Makefile0000644000175000017500000001270512341611030017040 0ustar gv10-debiangv10-debian00000000000000# Makefile for Sphinx documentation # # You can set these variables from the command line. SPHINXOPTS = SPHINXBUILD = sphinx-build PAPER = BUILDDIR = build # Internal variables. 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The `NFFT library `_ is licensed under GPLv2. This wrapper provides a somewhat Pythonic access to some of the core NFFT library functionalities and is largely inspired from the pyFFTW project developped by Henry Gomersall (http://hgomersall.github.io/pyFFTW/). The documentation is hosted on `pythonhosted `_, the source code is available on `github `_ and the Python package index page is `here `_. Important --------- There has been a major API change from version 1.2.x to 1.3 in prevision of version 2.0. Please check the documentation for more information. The only officially supported platform for version 1.3 is Linux. Support for more platforms is scheduled for the 2.x development tree. Usage ----- See the `tutorial `_ section of the documentation. Installation ------------ Support for pip/easy_install has been added via the `Python Package Index `_. The pyNFFT package can be installed with:: pip install pynfft Installation will fail if the NFFT library is not installed in a system-aware location. A workaround is to first call pip with:: pip install --no-install pynfft cd to where pip downloaded the package, then build with `setup.py`:: python setup.py build_ext -I -L -R and do a final call to pip:: pip install --no-download pynfft Building -------- The pyNFFT package can be built from the cloned git repository by calling:: python setup.py build and then installed with:: python setup.py install The build process requires Cython in order to generate the cythonized c-files:: python setup.py build_ext --inplace Build info ---------- The NFFT library has to be compiled with the --enable-openmp flag to allow for the generation of the threaded version of the library. Without it, any attempt to building the project will fail. Requirements ------------ - Python 2.7 or greater - Numpy 1.6 or greater - NFFT library 3.2 or greater, compiled with openMP support - (optional) Cython 0.12 or greater Contributing ------------ See the CONTRIBUTING file. License ------- The pyNFFT project is licensed under the GPLv3. See the bundled COPYING file for more details.