--- pynifti-0.20100607.1.orig/Makefile +++ pynifti-0.20100607.1/Makefile @@ -30,7 +30,8 @@ build: build-stamp -build-stamp: 3rd +# no 3rd building in Debian +build-stamp: python setup.py config --noisy python setup.py build_ext python setup.py build_py --- pynifti-0.20100607.1.orig/TODO +++ pynifti-0.20100607.1/TODO @@ -1,3 +1,5 @@ +* Enhance pynifti_pst to do percent signalchange relative to a given volume. + * Implement support for slice timing related NIfTI information. * Implement support for intent codes. --- pynifti-0.20100607.1.orig/setup.py +++ pynifti-0.20100607.1/setup.py @@ -21,7 +21,7 @@ # Common configuration # ######################## -extra_link_args = ['--Wl,--no-undefined'] +extra_link_args = [] include_dirs = [] library_dirs = [] defines = [] --- pynifti-0.20100607.1.orig/nifti/format.py +++ pynifti-0.20100607.1/nifti/format.py @@ -399,7 +399,8 @@ # assign remaining dim vector for i in range(7): - dim[i+1] = target_dim[i] + # cast to prevent type issues with the IntArray swig container + dim[i+1] = int(target_dim[i]) # expand dim vector self.raw_nimg.ndim = dim[0] --- pynifti-0.20100607.1.orig/nifti/clib.i +++ pynifti-0.20100607.1/nifti/clib.i @@ -115,38 +115,40 @@ switch(_img->datatype) { case NIFTI_TYPE_UINT8: - array_type = NPY_UBYTE; + array_type = NPY_UINT8; break; case NIFTI_TYPE_INT8: - array_type = NPY_BYTE; + array_type = NPY_INT8; break; case NIFTI_TYPE_UINT16: - array_type = NPY_USHORT; + array_type = NPY_UINT16; break; case NIFTI_TYPE_INT16: - array_type = NPY_SHORT; + array_type = NPY_INT16; break; case NIFTI_TYPE_UINT32: - array_type = NPY_UINT; + array_type = NPY_UINT32; break; case NIFTI_TYPE_INT32: - array_type = NPY_INT; + array_type = NPY_INT32; break; case NIFTI_TYPE_UINT64: + array_type = NPY_UINT64; + break; case NIFTI_TYPE_INT64: - array_type = NPY_LONG; + array_type = NPY_INT64; break; case NIFTI_TYPE_FLOAT32: - array_type = NPY_FLOAT; + array_type = NPY_FLOAT32; break; case NIFTI_TYPE_FLOAT64: - array_type = NPY_DOUBLE; + array_type = NPY_FLOAT64; break; - case NIFTI_TYPE_COMPLEX128: - array_type = NPY_CFLOAT; + case NIFTI_TYPE_COMPLEX64: + array_type = NPY_COMPLEX64; break; - case NIFTI_TYPE_COMPLEX256: - array_type = NPY_CDOUBLE; + case NIFTI_TYPE_COMPLEX128: + array_type = NPY_COMPLEX128; break; default: PyErr_SetString(PyExc_RuntimeError, "Unsupported datatype"); --- pynifti-0.20100607.1.orig/nifti/utils.py +++ pynifti-0.20100607.1/nifti/utils.py @@ -31,6 +31,7 @@ N.int64 : ncl.NIFTI_TYPE_INT64, N.float32: ncl.NIFTI_TYPE_FLOAT32, N.float64: ncl.NIFTI_TYPE_FLOAT64, + N.complex64: ncl.NIFTI_TYPE_COMPLEX64, N.complex128: ncl.NIFTI_TYPE_COMPLEX128 } """Mapping of NumPy datatypes to NIfTI datatypes.""" @@ -47,6 +48,7 @@ ncl.NIFTI_TYPE_INT64: 'i8', ncl.NIFTI_TYPE_FLOAT32: 'f4', ncl.NIFTI_TYPE_FLOAT64: 'f8', + ncl.NIFTI_TYPE_COMPLEX64: 'c8', ncl.NIFTI_TYPE_COMPLEX128: 'c16' } """Mapping of NIfTI to NumPy datatypes (necessary for handling memory --- pynifti-0.20100607.1.orig/man/pynifti_pst.1 +++ pynifti-0.20100607.1/man/pynifti_pst.1 @@ -1,5 +1,5 @@ -.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.38.2. -.TH PYNIFTI_PST "1" "July 2010" "pynifti_pst 0.20100607.1" "User Commands" +.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.37.1. +.TH PYNIFTI_PST "1" "April 2010" "pynifti_pst 0.20100412.1" "User Commands" .SH NAME pynifti_pst \- compute peristimulus timeseries of fMRI data .SH SYNOPSIS --- pynifti-0.20100607.1.orig/tests/test_fileio.py +++ pynifti-0.20100607.1/tests/test_fileio.py @@ -13,6 +13,7 @@ from nifti.image import NiftiImage, MemMappedNiftiImage from nifti.format import NiftiFormat +import nifti.utils import nifti.clib as ncl import unittest import md5 @@ -40,21 +41,23 @@ self.workdir = tempfile.mkdtemp('pynifti_test') self.nimg = NiftiImage(os.path.join('data', 'example4d.nii.gz')) self.fp = tempfile.NamedTemporaryFile(suffix='.nii.gz') + self.fp_plain = tempfile.NamedTemporaryFile(suffix='.nii') def tearDown(self): shutil.rmtree(self.workdir) del self.nimg self.fp.close() + self.fp_plain.close() def testIdempotentLoadSaveCycle(self): """ check if file is unchanged by load/save cycle. """ md5_orig = md5sum(os.path.join('data', 'example4d.nii.gz')) - self.nimg.save( os.path.join( self.workdir, 'iotest.nii.gz') ) - nimg2 = NiftiImage( os.path.join( self.workdir, 'iotest.nii.gz')) - md5_io = md5sum( os.path.join( self.workdir, 'iotest.nii.gz') ) + self.nimg.save(self.fp.name) + nimg2 = NiftiImage(self.fp.name) + md5_io = md5sum(self.fp.name) self.failUnlessEqual(md5_orig, md5_io) @@ -104,19 +107,19 @@ data = N.arange(24).reshape(2,3,4) n = NiftiImage(data) - n.save(os.path.join(self.workdir, 'scratch.nii')) + n.save(self.fp.name) - n2 = NiftiImage(os.path.join(self.workdir, 'scratch.nii')) + n2 = NiftiImage(self.fp.name) self.failUnless((n2.data == data).all()) # now modify data and store again n2.data[:] = n2.data * 2 - n2.save(os.path.join(self.workdir, 'scratch.nii')) + n2.save(self.fp.name) # reopen and check data - n3 = NiftiImage(os.path.join(self.workdir, 'scratch.nii')) + n3 = NiftiImage(self.fp.name) self.failUnless((n3.data == data * 2).all()) @@ -128,9 +131,9 @@ def testMemoryMapping(self): # save as uncompressed file - self.nimg.save(os.path.join(self.workdir, 'mmap.nii')) + self.nimg.save(self.fp_plain.name) - nimg_mm = MemMappedNiftiImage(os.path.join(self.workdir, 'mmap.nii')) + nimg_mm = MemMappedNiftiImage(self.fp_plain.name) # make sure we have the same self.failUnlessEqual(self.nimg.data[1,12,39,46], @@ -145,7 +148,7 @@ self.failUnlessEqual(nimg_mm.data[0,12,30,23], 999) # now reopen non-mapped and confirm operation - nimg_mod = NiftiImage(os.path.join(self.workdir, 'mmap.nii')) + nimg_mod = NiftiImage(self.fp_plain.name) self.failUnlessEqual(nimg_mod.data[0,12,30,23], 999) self.failUnlessRaises(RuntimeError, nimg_mm.setFilename, 'someother') @@ -161,9 +164,8 @@ self.failUnless( (self.nimg.qform == ident).all() ) # test save/load cycle - self.nimg.save( os.path.join( self.workdir, 'qformtest.nii.gz') ) - nimg2 = NiftiImage( os.path.join( self.workdir, - 'qformtest.nii.gz') ) + self.nimg.save(self.fp.name) + nimg2 = NiftiImage(self.fp.name) self.failUnless( (self.nimg.qform == nimg2.qform).all() ) @@ -173,9 +175,8 @@ new_qoffset = (10.0, 20.0, 30.0) self.nimg.qoffset = new_qoffset - fname = os.path.join(self.workdir, 'test-qoffset-file.nii.gz') - self.nimg.save(fname) - nimg2 = NiftiImage(fname) + self.nimg.save(self.fp.name) + nimg2 = NiftiImage(self.fp.name) self.failUnless((self.nimg.qform == nimg2.qform).all()) @@ -193,9 +194,8 @@ self.failUnless( (nimg3.qform == qform).all() ) # see whether it survives save/load cycle - fname = os.path.join(self.workdir, 'qform_fromfile_test.nii.gz') - nimg3.save(fname) - nimg4 = NiftiImage(fname) + nimg3.save(self.fp.name) + nimg4 = NiftiImage(self.fp.name) # test rotation portion of qform, pixdims appear to be ok self.failUnless( (nimg4.qform[:3, :3] == qform[:3, :3]).all() ) @@ -214,9 +214,8 @@ nimg.qform = ident self.failUnless( (nimg.qform == ident).all() ) - fname = os.path.join(self.workdir, 'qform_fromarray_test.nii.gz') - nimg.save(fname) - nimg2 = NiftiImage(fname) + nimg.save(self.fp.name) + nimg2 = NiftiImage(self.fp.name) # test rotation portion of qform, pixdims appear to be ok self.failUnless( (nimg.qform[:3, :3] == nimg2.qform[:3, :3]).all() ) # test full qform @@ -269,9 +268,9 @@ """ check if extensions actually get safed to the file. """ self.nimg.extensions += ('comment', 'fileio') - self.nimg.save(os.path.join( self.workdir, 'extensions.nii.gz')) + self.nimg.save(self.fp.name) - nimg2 = NiftiImage(os.path.join(self.workdir, 'extensions.nii.gz')) + nimg2 = NiftiImage(self.fp.name) # should be the last one added self.failUnless(nimg2.extensions[-1] == 'fileio') @@ -297,8 +296,8 @@ self.failUnless(ext[el] == teststr[:el]) # save/load cycle - self.nimg.save(os.path.join( self.workdir, 'ext2.nii.gz')) - nimg2 = NiftiImage(os.path.join(self.workdir, 'ext2.nii.gz')) + self.nimg.save(self.fp.name) + nimg2 = NiftiImage(self.fp.name) # see what came out of it ext2 = nimg2.extensions @@ -314,21 +313,20 @@ save/load cycle. """ self.nimg.meta['something'] = 'Gmork' - self.nimg.save(os.path.join( self.workdir, 'meta.nii.gz')) - nimg2 = NiftiImage(os.path.join(self.workdir, 'meta.nii.gz'), - loadmeta=True) + self.nimg.save(self.fp.name) + nimg2 = NiftiImage(self.fp.name, loadmeta=True) self.failUnless(nimg2.meta['something'] == 'Gmork') # test whether the meta extensions is preserved during a load/safe cycle # even when it is not unpickled intermediately # by default nothing is unpickled - nimg_packed = NiftiImage(os.path.join(self.workdir, 'meta.nii.gz')) + nimg_packed = NiftiImage(self.fp.name) self.failUnless(len(nimg_packed.meta) == 0) - nimg_packed.save(os.path.join( self.workdir, 'packed.nii.gz')) + nimg_packed.save(self.fp.name) - nimg_unpacked = NiftiImage(os.path.join(self.workdir, 'packed.nii.gz')) + nimg_unpacked = NiftiImage(self.fp.name) self.failUnless(nimg2.meta['something'] == 'Gmork') @@ -336,8 +334,8 @@ alt_array = N.zeros((3,4,5,6,7), dtype='int32') self.nimg.data = alt_array - self.nimg.save(os.path.join( self.workdir, 'assign.nii')) - nimg2 = NiftiImage(os.path.join(self.workdir, 'assign.nii')) + self.nimg.save(self.fp.name) + nimg2 = NiftiImage(self.fp.name) self.failUnless(nimg2.header['dim'] == [5, 7, 6, 5, 4, 3, 1, 1]) @@ -369,6 +367,20 @@ self.failUnlessRaises(UnicodeError, nim.save, fn_pureuni) + def testDTypesSupport(self): + """Check load/cycles with all supported dtypes""" + for dt in nifti.utils.N2nifti_dtype_map.keys(): + data = N.ones(65536, dt).reshape(256,256) + nim = NiftiImage(data) + nim.save(self.fp.name) + nim2 = NiftiImage(self.fp.name) + self.failUnlessEqual(nim2.data.dtype, dt) + self.failUnlessEqual(nim2.header['datatype'], + nifti.utils.N2nifti_dtype_map[dt]) + self.failUnless((nim2.data == 1).all()) + + + def suite(): return unittest.makeSuite(FileIOTests) --- pynifti-0.20100607.1.orig/debian/copyright +++ pynifti-0.20100607.1/debian/copyright @@ -0,0 +1,55 @@ +Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat +Upstream-Name: PyNIfTI +Upstream-Source: http://niftilib.sourceforge.net + + +Files: * +Copyright: Copyright 2006-2010, Michael Hanke +License: Expat + Permission is hereby granted, free of charge, to any person obtaining a copy + of this software and associated documentation files (the "Software"), to deal + in the Software without restriction, including without limitation the rights + to use, copy, modify, merge, publish, distribute, sublicense, and/or sell + copies of the Software, and to permit persons to whom the Software is + furnished to do so, subject to the following conditions: + + The above copyright notice and this permission notice shall be included in + all copies or substantial portions of the Software. + + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR + IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE + AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER + LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN + THE SOFTWARE. + + +Files: 3rd/nifticlibs/* +Copyright: None, the code is placed into the public domain +License: Other + The source tarball contains a partial copy of the NIfTI C libraries. This + code is placed into the public domain. Quote from LICENSE file: + + Niftilib has been developed by members of the NIFTI DFWG and volunteers in + the neuroimaging community and serves as a reference implementation of the + nifti-1 file format. + + http://nifti.nimh.nih.gov/ + + Nifticlib code is released into the public domain, developers are encouraged + to incorporate niftilib code into their applications, and, to contribute + changes and enhancements to niftilib. + + However, the corresponding libraries are available from the nifticlib source + package (or rather the binary packages it builds). Therefore this code is + not used and the respective packages are used as dependencies. This copy of + the nifticlibs code is, however, left in place, as it does not hurt and does + not justify repackaging of the upstream sources. + + +Files: debian/* +Copyright: Copyright 2006-2010, Michael Hanke +License: Expat + + --- pynifti-0.20100607.1.orig/debian/control +++ pynifti-0.20100607.1/debian/control @@ -0,0 +1,21 @@ +Source: pynifti +Section: python +Priority: optional +Maintainer: NeuroDebian Team +Uploaders: Michael Hanke , Yaroslav Halchenko +Build-Depends: cdbs, debhelper (>= 5.0.38), swig (>= 1.3.29), python-all-dev (>= 2.4), python-support (>= 0.6), python-numpy, libnifti-dev (>> 1.1.0-2), python-sphinx +Standards-Version: 3.9.2 +Homepage: http://niftilib.sourceforge.net/pynifti/ +Vcs-Browser: http://git.debian.org/?p=pkg-exppsy/pynifti.git +Vcs-Git: git://git.debian.org/git/pkg-exppsy/pynifti.git +DM-Upload-Allowed: yes + +Package: python-nifti +Architecture: any +Depends: ${misc:Depends}, ${shlibs:Depends}, ${python:Depends}, python-numpy, libjs-jquery +Provides: ${python:Provides} +XB-Python-Version: ${python:Versions} +Description: Python interface to the NIfTI I/O libraries + Using PyNIfTI one can easily read and write NIfTI and ANALYZE images from + within Python. The NiftiImage class provides Python-style access to the full + header information. Image data is made available via NumPy arrays. --- pynifti-0.20100607.1.orig/debian/changelog +++ pynifti-0.20100607.1/debian/changelog @@ -0,0 +1,245 @@ +pynifti (0.20100607.1-4) unstable; urgency=low + + * Add upstream bugfix for missing complex64 datatype support (Closes: + #629591). + * Do not compress objects.inv in Sphinx docs (Closes: #608750). + + -- Michael Hanke Fri, 09 Sep 2011 13:47:16 +0200 + +pynifti (0.20100607.1-3) unstable; urgency=low + + * Remove broken --no-undefined linker option for the nifticlib Python + extension (Closes: #625049). + * Updated uploader email address. + + -- Michael Hanke Wed, 04 May 2011 12:43:25 -0400 + +pynifti (0.20100607.1-2) unstable; urgency=low + + * Adjust libnifti-dev build-dependency -- no versioned -dev package + available anymore. + * Bumped Debian Standards-version to 3.9.0, no changes necessary. + * Adjust dependencies from python-numpy-ext to python-numpy + (Closes: #589589). + * Add patch to prevent type issue with swig-container and lastest NumPy. + + -- Michael Hanke Sun, 25 Jul 2010 08:36:23 -0400 + +pynifti (0.20100607.1-1) unstable; urgency=low + + * New upstream bugfix release. + * Switch maintainer to the NeuroDebian team, keep previous uploaders. + * Update dates in debian/copyright. + + -- Michael Hanke Tue, 06 Jul 2010 12:03:57 -0400 + +pynifti (0.20100412.1-1) unstable; urgency=low + + * New upstream bugfix release. + * Bump Standards-version to 3.8.4.0 -- no changes necessary. + * No longer build PDF version of the manual and removing texlive + as build-dependency. + + -- Michael Hanke Mon, 12 Apr 2010 20:38:25 -0400 + +pynifti (0.20090303.1-1) unstable; urgency=low + + * New upstream bugfix release (Closes: #517920). + + -- Michael Hanke Tue, 03 Mar 2009 18:35:05 +0100 + +pynifti (0.20090205.1-1) unstable; urgency=low + + * New upstream version. + * Build-depend on swig (>= 1.3.29) for the '-O' switch. + * Added 'XS-DM-Upload-Allowed: yes' in debian/control. + + -- Michael Hanke Sun, 08 Feb 2009 10:05:19 +0100 + +pynifti (0.20081017.1-1) unstable; urgency=low + + * New upstream version. + + -- Michael Hanke Fri, 17 Oct 2008 14:20:58 +0200 + +pynifti (0.20080710.1-1) unstable; urgency=low + + * New upstream release (Closes: #490141). + * Change email address of Yaroslav Halchenko in uploaders field to + 'yoh@debian.org'. + * Bumped Debian Standards-version to 3.8.0, no changes necessary. + * Converted debian/copyright into a machine readable format. + + -- Michael Hanke Thu, 10 Jul 2008 17:30:22 +0200 + +pynifti (0.20080630.1-1) unstable; urgency=low + + * New upstream release. Fixed memory leak. + * Merged bashism-removal patch with upstream. + + -- Michael Hanke Mon, 30 Jun 2008 10:08:58 +0200 + +pynifti (0.20080624.1-2) unstable; urgency=low + + * Fixed bashism in Makefile. + + -- Michael Hanke Wed, 25 Jun 2008 10:22:57 +0200 + +pynifti (0.20080624.1-1) unstable; urgency=low + + * New upstream release. + * Rewrote debian/rules using CDBS (with python-support) and adjusted + build-dependencies accordingly.. + * Build and install documentation in HTML format. + * Mention nifticlibs code copy in debian/copyright. + + -- Michael Hanke Tue, 24 Jun 2008 21:23:21 +0200 + +pynifti (0.20070930.1-2) unstable; urgency=low + + * Bumped Debian Standards-version to 3.7.3, no changes necessary. + * Modified build-deps for libnifti transition. + * Moved package to section 'python'. + + -- Michael Hanke Thu, 03 Jan 2008 12:22:14 +0100 + +pynifti (0.20070930.1-1) unstable; urgency=low + + * New upstream release. Relicense under the MIT license, to be compatible + with SciPy license. http://www.opensource.org/licenses/mit-license.php + * Updated documentation. + * Updated VCS information in debian/control. + * Added new-style Homepage field in debian/control. + * Updated debian/watch. + + -- Michael Hanke Wed, 28 Nov 2007 20:46:12 +0100 + +pynifti (0.20070917.1-1) unstable; urgency=low + + [ Michael Hanke ] + * Bugfix: Can now update NIfTI header data when no filename is set + (Closes: #442175). + * Unloading of image data without a filename set is no checked and prevented + as it would damage data integrity and the image data could not be + recovered. + + [ Yaroslav Halchenko ] + * Added 'pixdim' property. + + -- Michael Hanke Mon, 17 Sep 2007 08:32:59 +0200 + +pynifti (0.20070905.1-1) unstable; urgency=low + + [ Yaroslav Halchenko ] + * Fixed a bug in the qform/quaternion handling that caused changes to the + qform to vanish when saving to file. + + [ Michael Hanke ] + * Added more unit tests. + * 'dim' vector in the NIfTI header is now guaranteed to only contain + non-zero elements. This caused problems with some applications. + + -- Michael Hanke Wed, 5 Sep 2007 20:54:18 +0200 + +pynifti (0.20070803.1-1) unstable; urgency=low + + * Does not depend on SciPy anymore. + * Initial steps towards a unittest suite. + * pynifti_pst can now print the peristimulus signal matrix for a single + voxel (onsets x time) for easier processing of this information in + external applications. + * utils.getPeristimulusTimeseries() can now be used to compute mean and + variance of the signal (among others). + * debian/{copyright|watch} now point to the new home of pynifti in the + niftilib project on SourceForge. + * pynifti_pst is able to compute more than just the mean peristimulus + timeseries (e.g. variance and standard deviation). + * Relaxed build-dependency on libniftiio to any SO-version of the library. + * Set default image description when saving a file if none is present. + * Improved documentation. + + -- Michael Hanke Fri, 3 Aug 2007 15:47:26 +0200 + +pynifti (0.20070425.1-1) unstable; urgency=low + + * Improved documentation. Added note about the special usage of the header + property. Also added notes about the relevant properties in the docstring + of the corresponding accessor methods. + * Added property and accessor methods to access/modify the repetition time + of timeseries (dt). + * Added functions to manipulate the pixdim values. + * Added utils.py with some utility functions. + * Added functions/property to determine the bounding box of an image. + * Fixed a bug that caused a corrupted sform matrix when converting a NumPy + array and a header dictionary into a NIfTI image. + * Added script to compute peristimulus timeseries (pynifti_pst). + * Package now depends on python-scipy. + + -- Michael Hanke Wed, 25 Apr 2007 23:12:22 +0200 + +pynifti (0.20070315.1-1) unstable; urgency=low + + [ Yaroslav Halchenko ] + * Removed functionality for "NiftiImage.save() raises an IOError + exception when writing the image file fails." + + [ Michael Hanke ] + * Added ability to force a filetype when setting the filename or saving + a file. + * Reverse the order of the 'header' and 'load' argument in the NiftiImage + constructor. 'header' is now first as it seems to be used more often. + * Improved the source code documentation. + * Added getScaledData() method to NiftiImage that returns a copy of the data + array that is scaled with the slope and intercept stored in the NIfTI + header. + + -- Michael Hanke Thu, 15 Mar 2007 18:25:52 +0100 + +pynifti (0.20070301.2-1) unstable; urgency=low + + * Fixed wrong link to the source tarball in README.html. + + -- Michael Hanke Thu, 1 Mar 2007 22:27:26 +0100 + +pynifti (0.20070301.1-1) unstable; urgency=low + + [ Michael Hanke ] + * Updated build-depends to comply to the latest Python policy. + * Initial upload to the Debian archive. (Closes: #413049) + * NiftiImage.save() raises an IOError exception when writing the image file + fails. + + [ Yaroslav Halchenko ] + * Added extent, volextent, and timepoints properties to NiftiImage + class. + + -- Michael Hanke Thu, 1 Mar 2007 22:08:15 +0100 + +pynifti (0.20070220.1-1) unstable; urgency=low + + * NiftiFile class is renamed to NiftiImage. + * SWIG-wrapped libniftiio functions are no available in the nifticlib + module. + * Fixed broken NiftiImage from Numpy array constructor. + * Added initial documentation in README.html. + * Fulfilled a number of Yarik's wishes ;) + + -- Michael Hanke Tue, 20 Feb 2007 17:36:08 +0100 + +pynifti (0.20070214.1-1) unstable; urgency=low + + * Does not depend on libfslio anymore. + * Up to seven-dimensional dataset are supported (as much as NIfTI can do). + * The complete NIfTI header dataset is modifiable. + * Most image properties are accessable via class attributes and accessor + methods. + * Improved documentation (but still a long way to go). + + -- Michael Hanke Wed, 14 Feb 2007 10:11:55 +0100 + +pynifti (0.20061114-1) unstable; urgency=low + + * Initial release. + + -- Michael Hanke Tue, 14 Nov 2006 19:36:51 +0100 + --- pynifti-0.20100607.1.orig/debian/pycompat +++ pynifti-0.20100607.1/debian/pycompat @@ -0,0 +1 @@ +2 --- pynifti-0.20100607.1.orig/debian/python-nifti.links +++ pynifti-0.20100607.1/debian/python-nifti.links @@ -0,0 +1 @@ +usr/share/javascript/jquery/jquery.js usr/share/doc/python-nifti/html/_static/jquery.js --- pynifti-0.20100607.1.orig/debian/rules +++ pynifti-0.20100607.1/debian/rules @@ -0,0 +1,30 @@ +#!/usr/bin/make -f +# -*- mode: makefile; coding: utf-8 -*- + +include /usr/share/cdbs/1/rules/debhelper.mk +DEB_PYTHON_SYSTEM = pysupport +DEB_PYTHON_MODULE_PACKAGE = python-nifti +include /usr/share/cdbs/1/class/python-distutils.mk + +clean:: + $(MAKE) distclean + +build/python-nifti:: + $(MAKE) unittest + $(MAKE) htmldoc + + +# use jquery from Debian package +# symlinked by debhelper +install/python-mvpa-doc:: + -rm build/html/_static/jquery.js + + +# install directly into package directory +DEB_DESTDIR = $(CURDIR)/debian/python-nifti +# immediately useable documentation +# and exemplar data (they are small excerpts anyways) +DEB_COMPRESS_EXCLUDE := .py .html .css .jpg .txt .js .json .rtc .par .bin objects.inv +# doc contents +DEB_INSTALL_DOCS_python-nifti := build/html + --- pynifti-0.20100607.1.orig/debian/compat +++ pynifti-0.20100607.1/debian/compat @@ -0,0 +1 @@ +5 --- pynifti-0.20100607.1.orig/debian/python-nifti.manpages +++ pynifti-0.20100607.1/debian/python-nifti.manpages @@ -0,0 +1 @@ +man/pynifti_pst.1 --- pynifti-0.20100607.1.orig/debian/watch +++ pynifti-0.20100607.1/debian/watch @@ -0,0 +1,8 @@ +# Compulsory line, this is a version 3 file +version=3 + +#http://apsy.gse.uni-magdeburg.de/~hanke/software/pynifti/pynifti_(.*)\.orig\.tar\.gz +http://sf.net/niftilib pynifti_([\d\.]*)\.tar\.gz + + +