resources/about.html 000644 001750 001750 00000006664 14205451130 015405 0 ustar 00cyril cyril 000000 000000
SPVIEW
General Disclaimer
SPVIEW (SPectrum-VIEWer) allows to assign experimental high-resolution molecular spectra. The input elements are:
Experimental and calculated data (Data menu): either XY files (experimental trace or stick spectrum) or line lists in various formats.
OPUS files from Bruker can also be read.
Experimental peaks and predicted lines (Assignment menu).
The data are plotted in the center of the window (data area) and the peaks and predicted lines are displayed as ticks in the upper part (pred/exp area).
The peaks and/or predicted lines ticks can be associated to one of the data files so that they follow its drawing modifications (X shifts). The association is shown by a common color.
Each assignment is either of frequency or intensity type. Each type is specified by a mark which should be either a space (not assigned with this type),
a '+' (to be fitted with this type) or a '-' (to be ignored in the fit with this type). Experimental ticks are topped by global frequency and intensity marks.
Each global mark is either a space (if no assignment is of this type), a '+' or a '-' (if all assignments of this type have this mark) or a '?' (if assignments
of this type do not have all the same mark).
A so-called EXASG string is associated to each assignment. It is used by the fit job to select the lines to be taken into account. The initial default value of this string for new assignments is 'SPVIEW_EXASG'. This default value can be modified.
The pred/exp area ticks can be selected with the mouse and in this way predicted lines can be assigned to each experimental peak (see Popup menus below). Once this is done, one can save the assignment file (Assignment menu).
Popup menus:
In data area:
Right-click (Command-click, ...) allows to rescale the axes and to set/reset a vertical bar which helps to visualize frequency coincidences.
In pred/exp area:
Left-click in exp area (upper part of the pred/exp area) allows to select one experimental peak in a popup list.
Right-click (Command-click, ...) allows to modify the attributes of the selected experimental peak (assignments, ...).
Left-click or left button drag allows to select one or more prediction lines in a popup list.
The current selected exp is marked by a red oval.
The current selected (in the 'Predictions selection' popup list) pred are marked by green ovals.
The current mouse pointed (in the 'Predictions selection' popup list) pred is marked by a yellow square).
The current assigned (to any exp) pred are marked by an orange disc.
The current assigned (to the selected exp) pred are marked by a red disc.
Contact
Website
resources/JFSelPred/jmiaddassf.html 000644 001750 001750 00000000315 14000365526 020147 0 ustar 00cyril cyril 000000 000000
Add pred assignment(s) to exp
Add the selected predictions as frequency assignments to the selected experimental peak.
resources/JFSelPred/jmipredno.html 000644 001750 001750 00000000201 14000365526 020023 0 ustar 00cyril cyril 000000 000000
Select
Unselect all predictions in a list.
sources/org/spview/gui/JFCreatePeakFile.java 000644 001750 001750 00000025340 14176571005 021640 0 ustar 00cyril cyril 000000 000000 package org.spview.gui;
import java.awt.BorderLayout;
import java.awt.Component;
import java.awt.Container;
import java.awt.GridLayout;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.awt.event.WindowAdapter;
import java.awt.event.WindowEvent;
import java.awt.geom.Point2D;
import java.io.File;
import java.util.ArrayList;
import javax.swing.Box;
import javax.swing.JButton;
import javax.swing.JCheckBox;
import javax.swing.JFileChooser;
import javax.swing.JFrame;
import javax.swing.JLabel;
import javax.swing.JOptionPane;
import javax.swing.JPanel;
import javax.swing.JTextField;
import javax.swing.filechooser.FileNameExtensionFilter;
import org.spview.filehandler.FortranFormat;
import org.spview.filehandler.DataFile;
import org.spview.peakfinding.DigitalFilter;
import java.awt.Toolkit;
/////////////////////////////////////////////////////////////////////
/**
* Window for peak file creation.
*/
public class JFCreatePeakFile extends JFrame implements ActionListener {
/**
*
*/
private static final long serialVersionUID = -7784282622048412967L;
private final String workd; // working directory
//
private final JButton jbfile; // spectrum file choice
private final JLabel jlnfile; // show spectrum file name
private final JButton jbclose; // cancel button
private final JButton jbfind; // create button
private final JTextField jftfwidth; // jftf for polynom degree
private final JTextField jtfthreshold; // jftf for height threshold
private final JCheckBox inverseButton;
private final JTextField xuncvalue;
private final JTextField yuncvalue;
DataFile dataf;
// variables
private int filterWidth; // filter width
private float threshold; // height threshold
private String nfile; // spectrum full file name
private Point2D uncert; // X and Y uncertainties
/////////////////////////////////////////////////////////////////////
/**
* Construct a new JFCreatePeakFile.
*
*/
public JFCreatePeakFile(DataFile dataf) {
super("Peak File Creation"); // main window
setIconImage(Toolkit.getDefaultToolkit().getImage(JFCreatePeakFile.class.getResource("/pixmaps/spview.png")));
addWindowListener(new WindowAdapter() { // clean end
public void windowClosing(WindowEvent e) {
dispose(); // free window
}
});
workd = System.getProperty("user.dir"); // working directory
this.dataf = dataf;
nfile = this.dataf == null ? "" : this.dataf.getname();
setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE);
setLocation(100, 100); // location
setSize(405, 254); // size
// panels
getContentPane().setLayout(new BorderLayout());
JPanel jp = new JPanel(new BorderLayout());
jp.setBorder(null);
getContentPane().add(jp, "Center");
// panels
JPanel pouest = new JPanel(new GridLayout(6, 1, 5, 5));
JPanel pcentre = new JPanel(new GridLayout(6, 1, 5, 5));
JPanel psud = new JPanel();
// spectrum file
jbfile = new JButton("Spectrum file...");
jbfile.setToolTipText("Select the spectrum file to process");
jbfile.addActionListener(this);
jlnfile = new JLabel(nfile);
// polynom degree
//
JLabel jldwidth = new JLabel("Filter Width:");
jftfwidth = new JTextField("7");
jftfwidth.setToolTipText("This is the filter width (in # of points) used for the convolution.");
// height threshold
// show height threshold
JLabel jlthreshold = new JLabel("Height Threshold:");
jtfthreshold = new JTextField("0.0");
jtfthreshold.setToolTipText("This is the line height threshold above which lines are detected.");
pouest.add(jbfile);
pcentre.add(jlnfile);
pouest.add(jldwidth);
pcentre.add(jftfwidth);
pouest.add(jlthreshold);
pcentre.add(jtfthreshold);
Box boxsud = Box.createHorizontalBox(); // add buttons to box
jbfind = new JButton("Find Peaks");
boxsud.add(jbfind);
jbfind.setToolTipText("Create peak file");
jbfind.addActionListener(this);
boxsud.add(Box.createHorizontalStrut(15));
// south
jbclose = new JButton("Close");
jbclose.setToolTipText("Cancel peak file creation");
jbclose.addActionListener(this);
boxsud.add(jbclose);
psud.add(boxsud);
// insert panels
jp.add(pouest, "West");
//
Component verticalGlue = Box.createVerticalGlue();
pouest.add(verticalGlue);
JLabel jtuncx = new JLabel("X uncertainty");
pouest.add(jtuncx);
JLabel jtuncy = new JLabel("Y uncertainty");
pouest.add(jtuncy);
jp.add(pcentre, "Center");
inverseButton = new JCheckBox("Down");
inverseButton.setToolTipText("Check this option when spectrum is bottom oriented.");
pcentre.add(inverseButton);
xuncvalue = new JTextField("0.001000");
xuncvalue.setToolTipText("x uncertainties are written in the peak file output.");
pcentre.add(xuncvalue);
xuncvalue.setColumns(10);
yuncvalue = new JTextField("10.0");
yuncvalue.setToolTipText("y uncertainties are written in the peak file output.");
pcentre.add(yuncvalue);
yuncvalue.setColumns(10);
jp.add(psud, "South");
}
private static double getMinData(double[] data, int size) {
double minData = Double.MAX_VALUE;
for (int i = 0; i < size; i++) {
minData = Math.min(minData, data[i]);
}
return minData;
}
private static double getMaxData(double[] data, int size) {
double maxData = Double.MIN_VALUE;
for (int i = 0; i < size; i++) {
maxData = Math.max(maxData, data[i]);
}
return maxData;
}
private static String removeExtention(String filePath) {
// These first few lines the same as Justin's
File f = new File(filePath);
// if it's a directory, don't remove the extention
if (f.isDirectory())
return filePath;
String name = f.getName();
// Now we know it's a file - don't need to do any special hidden
// checking or contains() checking because of:
final int lastPeriodPos = name.lastIndexOf('.');
if (lastPeriodPos <= 0) {
// No period after first character - return name as it was passed in
return filePath;
} else {
// Remove the last period and everything after it
File renamed = new File(f.getParent(), name.substring(0, lastPeriodPos));
return renamed.getPath();
}
}
private boolean checkValue() {
if (dataf == null) {
return false;
}
filterWidth = Integer.parseInt(jftfwidth.getText());
if (filterWidth <= 0) {
JOptionPane.showMessageDialog(null, "Filter width has to be > 3");
return false;
}
// height threshold
try {
threshold = Float.parseFloat(jtfthreshold.getText());
} catch (NumberFormatException nfe) {
// format error
JOptionPane.showMessageDialog(null, "threshold is not valid");
jtfthreshold.setText("0.0");
return false;
}
if (threshold < 0.0) {
JOptionPane.showMessageDialog(null, "Threshold has to be >= 0.0");
jtfthreshold.setText("0.0");
return false;
}
float xUncert, yUncert;
try {
xUncert = Float.parseFloat(xuncvalue.getText());
} catch (NumberFormatException nfe) {
// format error
JOptionPane.showMessageDialog(null, "X uncertainty is not valid");
xuncvalue.setText("0.001000");
return false;
}
if (xUncert < 0.0) {
JOptionPane.showMessageDialog(null, "X uncertainty has to be >= 0.0");
xuncvalue.setText("0.001000");
return false;
}
try {
yUncert = Float.parseFloat(yuncvalue.getText());
} catch (NumberFormatException nfe) {
// format error
JOptionPane.showMessageDialog(null, "Y uncertainty is not valid");
yuncvalue.setText("10.0");
return false;
}
if (yUncert < 0.0) {
JOptionPane.showMessageDialog(null, "Y uncertainty has to be >= 0.0");
yuncvalue.setText("10.0");
return false;
}
uncert = new Point2D.Float(xUncert, yUncert);
return true;
}
private File pickAFileName(String nameSuggestion) {
// This method creates an XML File to save the file(s) added in the project.
// choose the project file
JFileChooser jfcfile = new JFileChooser(nameSuggestion); // default choice directory
FileNameExtensionFilter filter = new FileNameExtensionFilter("Peak list file (*.asg)", "asg"); // Only files
// .spv
jfcfile.setSize(400, 300);
jfcfile.setFileSelectionMode(JFileChooser.FILES_ONLY); // files only
jfcfile.setDialogTitle("Save Peak List");
jfcfile.addChoosableFileFilter(filter); // add the filter created above
jfcfile.setAcceptAllFileFilterUsed(false); // All types of file are NOT accepted
jfcfile.setSelectedFile(new File(nameSuggestion));
if (jfcfile.showSaveDialog(this.getParent()) == JFileChooser.APPROVE_OPTION) {
File selectedFile = jfcfile.getSelectedFile();
if (!selectedFile.getAbsolutePath().endsWith(".asg")) {
selectedFile = new File(jfcfile.getSelectedFile() + ".asg");
}
if (!selectedFile.exists() || (selectedFile.exists()
&& JOptionPane.OK_OPTION == JOptionPane.showConfirmDialog(this.getParent(),
"File " + selectedFile.getAbsolutePath() + " already exists! Overwrite?", "Save",
JOptionPane.YES_NO_OPTION))) {
return selectedFile;
}
}
return null;
}
private boolean savePeakList(ArrayList peakPositions) {
String newFilename = removeExtention(this.nfile);
File pickedFile = pickAFileName(newFilename);
if (pickedFile != null) {
FortranFormat.printAssignmentFormattedOutput(peakPositions, uncert, pickedFile);
return true;
}
return false;
}
/////////////////////////////////////////////////////////////////////
/**
* Process events.
*/
public void actionPerformed(ActionEvent evt) {
// Spectrum file
if (evt.getSource() == jbfile) {
JFileChooser jfcfile = new JFileChooser(workd); // default directory
jfcfile.setSize(400, 300);
jfcfile.setFileSelectionMode(JFileChooser.FILES_ONLY); // files only
Container parent = jbfile.getParent();
int choice = jfcfile.showDialog(parent, "Select"); // Dialog, Select
if (choice == JFileChooser.APPROVE_OPTION) {
File f = jfcfile.getSelectedFile();
nfile = f.getAbsolutePath();
dataf = new DataFile(nfile); // full exp file name;
dataf.setType("dataread");
dataf.read();
} else {
nfile = "";
}
jlnfile.setText(nfile);
return;
}
// cancel
if (evt.getSource() == jbclose) {
dispose();
return;
}
// find peaks
if (evt.getSource() == jbfind) {
if (checkValue()) {
int pt = inverseButton.isSelected() ? -1 : 1;
if (inverseButton.isSelected()) {
double yInv = getMaxData(this.dataf.getY(), this.dataf.getNbxy())
+ getMinData(this.dataf.getY(), this.dataf.getNbxy());
threshold = (float) yInv - threshold;
}
ArrayList peakPositions = DigitalFilter.findPeaks(this.dataf.getX(), this.dataf.getY(), pt,
threshold, filterWidth);
if (peakPositions == null) {
JOptionPane.showMessageDialog(null, "No peak detected!");
} else {
JOptionPane.showMessageDialog(null, "Number of detected peaks: " + peakPositions.size());
if (peakPositions.size() > 0) {
if (savePeakList(peakPositions)) {
dispose();
}
}
}
}
}
}
}
sources/org/spview/point/PredXPoint.java 000644 001750 001750 00000003502 14205637625 021215 0 ustar 00cyril cyril 000000 000000 package org.spview.point;
/**
* This class allows sorting prediction file X data.
*/
public class PredXPoint implements Comparable {
private final double x; // frequency
private final double y; // intensity
private final String jsyn; // assignment
/**
* Construct a new PredXPoint.
*
* @param cx frequency
* @param cy intensity
* @param cjsyn prediction assignment
*/
public PredXPoint(double cx, double cy, String cjsyn) {
x = cx; // frequency
y = cy; // intensity
jsyn = cjsyn; // assignment
}
/////////////////////////////////////////////////////////////////////
/**
* Get frequency.
*/
public double getX() {
return x;
}
/**
* Get intensity.
*/
public double getY() {
return y;
}
/**
* Get prediction assignment string.
*/
public String getJsyn() {
return jsyn;
}
/**
* Compare frequencies only.
*
* @param cpxpt the PredXPoint to compare to
*/
public int compareTo(Object cpxpt) {
if( ! (cpxpt instanceof PredXPoint) ) { // not the right object
throw new ClassCastException();
}
double delta = ((PredXPoint)cpxpt).getX() - x; // compare frequencies
if ( delta < 0 ) {
return 1;
}
else if( delta > 0 ) {
return -1;
}
return 0; // equal
}
}
resources/PanAff/jmidefexasg.html 000644 001750 001750 00000000237 14000365526 017710 0 ustar 00cyril cyril 000000 000000
EXASG
Define the default EXASG string for new assignments from the list.
resources/ 000755 001750 001750 00000000000 14325453166 013407 5 ustar 00cyril cyril 000000 000000 sources/org/spview/ 000755 001750 001750 00000000000 14325453236 015162 5 ustar 00cyril cyril 000000 000000 sources/org/spview/gui/ThresholdDialog.java 000644 001750 001750 00000001624 14046454633 021672 0 ustar 00cyril cyril 000000 000000 package org.spview.gui;
import javax.swing.*;
import java.util.regex.Pattern;
public class ThresholdDialog {
private static final Pattern pattern = Pattern.compile("-?\\d+(\\.\\d+)?");
public double getThreshold() {
String result = (String) JOptionPane.showInputDialog(
null,
"Select the prediction threshold you want to apply.\nNegative value for no threshold.",
"Prediction threshold",
JOptionPane.PLAIN_MESSAGE,
null,
null,
PanAff.getThreshold()
);
if (isNumeric(result))
return Double.parseDouble(result);
else {
return -Double.MAX_VALUE;
}
}
private static boolean isNumeric(String strNum) {
if (strNum == null) {
return false;
}
return pattern.matcher(strNum).matches();
}
} sources/org/spview/filehandler/FileParser.java 000644 001750 001750 00000015306 14046454633 022345 0 ustar 00cyril cyril 000000 000000 package org.spview.filehandler;
import java.io.File;
import java.io.IOException;
import java.util.ArrayList;
import javax.xml.parsers.DocumentBuilder;
import javax.xml.parsers.DocumentBuilderFactory;
import javax.xml.parsers.ParserConfigurationException;
import org.w3c.dom.Document;
import org.w3c.dom.Element;
import org.w3c.dom.Node;
import org.w3c.dom.NodeList;
import org.xml.sax.SAXException;
public class FileParser {
private final ArrayList pathlist = new ArrayList<>();
private final ArrayList attrlist = new ArrayList<>();
private final ArrayList AttributeOfFilelist = new ArrayList<>();
private final ArrayList yReverseElement = new ArrayList<>();
private final ArrayList hideElement = new ArrayList<>();
private final ArrayList xShiftState = new ArrayList<>();
private final ArrayList yShiftState = new ArrayList<>();
private final String minX;
private final String maxX;
private final String minY;
private final String maxY;
private final String indexColorPred;
private final String indexColorExp;
public FileParser(String filename) throws ParserConfigurationException, SAXException, IOException {
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
DocumentBuilder builder = factory.newDocumentBuilder();
File fileXML = new File(filename);
Document xml = builder.parse(fileXML);
Element spvFile = xml.getDocumentElement();
getAttributeList(spvFile, this.AttributeOfFilelist, "File", "AttributeOfFile");
getAttributePath(spvFile, this.pathlist, this.attrlist);
getTagValueList(spvFile, this.yReverseElement, "yReverse");
getTagValueList(spvFile, this.hideElement, "hide");
this.indexColorPred = getTagValue(spvFile, "indexColorPred", "0");
this.indexColorExp = getTagValue(spvFile, "indexColorExp", "0");
getTagValueList(spvFile, this.xShiftState, "xShiftState");
getTagValueList(spvFile, this.yShiftState, "yShiftState");
this.minX = getTagValue(spvFile, "xmin", "0.0");
this.maxX = getTagValue(spvFile, "xmax", "0.0");
this.minY = getTagValue(spvFile, "ymin", "0.0");
this.maxY = getTagValue(spvFile, "ymax", "0.0");
}
private static void getAttributeList(Node n, ArrayList array, String string, String attribute) {
if (n instanceof Element) {
Element element = (Element) n;
if (n.getNodeName().equals(string)) {
array.add(element.getAttribute(attribute));
}
// The child nodes of the current node are handled.
int nbChild = n.getChildNodes().getLength();
// A list of these child nodes is retrieved
NodeList list = n.getChildNodes();
// The program checks into the list
for (int i = 0; i < nbChild; i++) {
Node n2 = list.item(i);
// if the child node is an Element, it is handled
if (n2 instanceof Element) {
// Recursive use of the method to handle the node and its children
getAttributeList(n2, array, string, attribute);
}
}
}
}
private static void getTagValueList(Node n, ArrayList array, String string) {
if (n instanceof Element) {
Element element = (Element) n;
if (n.getNodeName().equals(string)) {
array.add(element.getTextContent());
}
// The child nodes of the current node are handled.
int nbChild = n.getChildNodes().getLength();
// A list of these child nodes is retrieved
NodeList list = n.getChildNodes();
// The program checks into the list
for (int i = 0; i < nbChild; i++) {
Node n2 = list.item(i);
// if the child node is an Element, it is handled
if (n2 instanceof Element) {
// Recursive use of the method to handle the node and its children
getTagValueList(n2, array, string);
}
}
}
}
private static String getTagValue(Element eElement, String sTag, String defaultVal) {
if (eElement.getElementsByTagName(sTag).item(0) == null) {
return defaultVal;
}
NodeList nlList = eElement.getElementsByTagName(sTag).item(0).getChildNodes();
Node nValue = nlList.item(0);
return nValue.getNodeValue();
}
private static void getAttributePath(Node n, ArrayList pathlist, ArrayList attrlist) {
String type;
if (n instanceof Element) {
Element element = (Element) n;
if (n.getNodeName().equals("path")) {
pathlist.add(element);
type = element.getAttribute("Type");
attrlist.add(type);
}
// The child nodes of the current node are handled.
int nbChild = n.getChildNodes().getLength();
// A list of these child nodes is retrieved
NodeList list = n.getChildNodes();
// The program checks into the list
for (int i = 0; i < nbChild; i++) {
Node n2 = list.item(i);
// if the child node is an Element, it is handled
if (n2 instanceof Element) {
// Recursive use of the method to handle the node and its children
getAttributePath(n2, pathlist, attrlist);
}
}
}
}
/* getter and setter */
public ArrayList getAttributeOfFilelist() {
return AttributeOfFilelist;
}
public ArrayList getPathlist() {
return pathlist;
}
public ArrayList getAttrlist() {
return attrlist;
}
public ArrayList getyReverseElementslist() {
return yReverseElement;
}
public ArrayList getHideElementslist() {
return hideElement;
}
public ArrayList getxShiftElementslist() {
return xShiftState;
}
public ArrayList getyShiftElementslist() {
return yShiftState;
}
public double getMinX() {
return Double.parseDouble(this.minX);
}
public double getMinY() {
return Double.parseDouble(this.minY);
}
public double getMaxX() {
return Double.parseDouble(this.maxX);
}
public double getMaxY() {
return Double.parseDouble(this.maxY);
}
public int getIndexColorPred() {
return Integer.parseInt(indexColorPred);
}
public int getIndexColorExp() {
return Integer.parseInt(indexColorExp);
}
} resources/pixmaps/bottom.png 000644 001750 001750 00000006115 14000365526 017075 0 ustar 00cyril cyril 000000 000000 PNG
IHDR szz zTXtRaw profile type exif xڭWY& 98b
ro7I*5IZ7s?#JE%Ք.br n?:"wQcg@Ώr<*w}_/jYWFܟgWw9϶7ޞc_ G3p^TKq!J
1ع
K/?mH2FNd%dԍ_ApBkbMo5}h +c3/\\*w`iL eNXB:k{ `.pPh u|Ewy
t3 \ 퓿2Q 8#B<3
ȄLT7 iS4@Vɱ G̉3,)8(!9KYJ(pI%RjJ5qM5Zj"P*Z`HZlR˭ڤ#|zSϽe?nQL?J3NiYfk+xWYuɝ+kY5e,ں`
o[x-'1 ge MU|)gW%$X 8=w țxsJSs_y(,TLPذ`"ړ fi d~%:u=+SM8f$|lL}〈8RyГ(T݈xK͖XKc7?$~=Lj>vumah m ,a <-| :?0,G fܼ<C5`8zHx_,ؤ _u8
#^k2|`\ %E}l3aǬ[
YRCN$ZvK=BR[I혇 >'lԞE;XOl ^ Txe]!&pia/H"7<sdI:OҶ-fUf 3P]4h륐ҠL>R p@ܫU448)uFGr g@ a,P8X<@>j9U1C
*n,Ҵ99 gM(J"N?F9\9`3;
mj %$J,{!Ci檅/A9d9;&^u*YZ$WNd
آ$VnJNe6[GTS_ó Llt + ILCUn4vm5ݏ)Ia=}ibMZ
J$ʁM5Է4hFE
d
am{~6!r[vGwSon 'gIcv},ZKBMR
IĨӊ||
u{?5m5u(Ļk&ޏ0C|р.ڔ<5uGmuy) /ȭ+ٯ"wd`X:O99SÙ(#H 2z R||HG1sӒ`/=@WE'x~Y&]Z~Ag6hd"oCOgӎ! h/C f}f<gIhNg c]4AŁ+oN;NsF,uy l-C*קѝ mE[N68FV
*j'<)ZsB'POVJ=5~a
hBxx bKGD pHYs .# .#x?v tIME
&.U IDATXåWk\U}oBtH1 MF4i -"V
nvJ)A\*B
@KDJ$ԏEB7v,35cw߽Ǜ$ w=;Wa OZȫ"2)""R"?DWAԛ-j"rRDR )$3 3"riF wyϊ!)@?3{5ftD O |#"ceDTKDuu"b @6]bfykywBp? DQu\xD8 FGGID3RL KX Y`)}^D^ p. ۷o?+e(`)Oa ̯ ߬䜃 q 9囁 ZT*89p!"B`3"RH8bB)n `93#cdY6yw%-} j߾}#y/iJi "nDEYk93(8,"E1A\<'MH)uX+[( "%wލ 0ThR:rFc͞ [E&l⇹9D!1uֆ^
ƕ RJ
e713=%'upMQJ r 4 0hStƍW10`eej,W?ԙbf8F ZcuujuKEPJdDDƘI IR IgQRb"jZ\o*No FN% csw=WHvݿ7mj5QAP*7 vѰR{}w&?+JG !Iر nkye{ ?SSSUi4Mesضm8 Xkq
F| /xj7Z-;:::EsQX Ge Zk
"/..njιڽ)HZ2`"
ԝ;w.= &''cf~{9w 7 J' 6Mԗgbbb/3S̼s=< o4A K IENDB` resources/JobPlay/jmiyreverse.html 000644 001750 001750 00000000216 14000365526 020170 0 ustar 00cyril cyril 000000 000000
Y-reverse
Reverse the Y-axis direction for a data file.
resources/JobPlay/jmiloadhitras.html 000644 001750 001750 00000000305 14000365526 020455 0 ustar 00cyril cyril 000000 000000
Load (as stick) prediction file
Load a prediction file in HITRAN format to plot it as sticks in the data area.
resources/pixmaps/up.png 000644 001750 001750 00000006044 14000365526 016216 0 ustar 00cyril cyril 000000 000000 PNG
IHDR szz zTXtRaw profile type exif xڭW[#) {@<3boߔ {fc].J_0삤 K>|Ͼ>|~`<~?yWB
^.N> ګg y,y(1GSHbJ)j9d1sɵphaRbIRJpZt3jm| MZlVZO]z^z <@8yQ'MHi)34,.hmʫzg}a{谦 m v"@`<)4+gWXSή(
aF R`IJ݃oys7ĜSRw7j;7
/46Lr'}l#h~ q\RC.lutVpx8IcaB_,æ!+s,{3#n)e@$pB ]U\AG h3X4LPx('MrՉ`t*5se8
u:
C54YUT>د$zp/Usnhj ):A~eRĊxn #x1YcƘb ÐӟCb2`8Oʤ[pbzF!4g 8H!뢞Jb Qګ*Ģ1K4-)Q Vs'&wmh864lz8#Q%=
[5'T lvtgpQTj뽖Y ^EkRYIDQIVj:ulA1̡e3 0l ;6AӘStC66tåhY35/i h?e\>\@f"~̪W)/v dʅj4+Z-UKVʩj>n<1т -uORy}TZ0H#%B >B_4aW0c(8DxDxݐ0B#
c
.k?OgIk#nh/b֎6RXφc]vKFGC#h${h@Q)P(Fa HVm Y; &Ddp ÿ 0Ί(dG]Y o40C/T4GS^pq7i5gHvC؉T _ݎ>sHv&HwqkINvN_nz J#-|wα ^
;kq^Nn bUacH;i@Fp{ Ċi CauC&rX`O; L G bKGD pHYs .# .#x?v tIME
' l i5 IDATXíWAk\Uι73LHBa 1qQm ҅EMH KеEDH nB44#2) fǝyssw. N4h323zoXtЄfi |`ND^8vaf03RZCk}G)߭#:Kܴsy9 D"ch(`1ݻwo
@0"(" {
J)03 9km q T*sM)rz cǎU$"gB9cE Z \1 ). eJZw;LNN ș0r$I
>~K1v] T*(7oP!r\ n~, =k->NSSJ=no<^#"_3 ˲qA_0 -" eDkW>|bQ1BYAk]'ι&_&f/^DB ZXc? ,,,`rbbgۍ"LLL`n~@\l`=YD
({:~8fggwZtѹxy4}A}-"^ '}KDp6Ȓ۹ "PJb DQ,
!CDy[FeC;Y 7ឤ&T>Q!M
D HӴЍ=)nFyj-tMg " 7T*!MӂHӴ\) \^__w/YSa@x[k*$;3oԄ D% -A$E3&#^Yf[[[2 AD^ Ax+4b;B fwND <|І uQ"o4ѫ0 z,}FD=5fJ)uғ(t F {-fѣ[# N{1 3G=~%E"NǻKIDQjDh։h~t:3"jB IENDB` sources/org/spview/gui/OpusDialog.java 000644 001750 001750 00000003413 14211661567 020662 0 ustar 00cyril cyril 000000 000000 package org.spview.gui;
import org.spview.filehandler.OpusFile;
import java.awt.*;
import java.awt.event.*;
import javax.swing.*;
public class OpusDialog extends JFrame implements ActionListener {
Object selected;
public OpusDialog(String[] string, String initialSelectionValue) {
JPanel panel = new JPanel();
JButton button = new JButton("Information");
button.addActionListener(this);
setLayout(new BorderLayout());
panel.add(button);
selected = JOptionPane.showInputDialog(
null, panel,
"OPUS File selector",
JOptionPane.PLAIN_MESSAGE,
null,
string,
initialSelectionValue
);
}
public Object getSelected() {
return selected;
}
@Override
public void actionPerformed(ActionEvent e) {
String Title = "File Information Load peak/experiment file
Load the experimental peak list to plot it as ticks in the pred/exp area.
resources/pixmaps/backward.png 000644 001750 001750 00000002623 14000365526 017347 0 ustar 00cyril cyril 000000 000000 PNG
IHDR szz ZIDATXW[hTGfKݤRC(^i.
Z/mOEP>I-A>OҒ&$!.q7L s
Hide
Hide a data file.