debian/0000755000000000000000000000000012262566652007202 5ustar debian/copyright0000644000000000000000000000335312262547774011145 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: spykeutils Upstream-Contact: Robert Pröpper Source: https://github.com/rproepp/spykeutils Files: * Copyright: 2012, Robert Pröpper License: BSD-3-clause License: BSD-3-clause Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. Neither the name of the author nor the names of the contributors may be used to endorse or promote products derived from this software without specific prior written permission. . THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. debian/control0000644000000000000000000000315012262547774010610 0ustar Source: spykeutils Section: python Priority: extra Maintainer: NeuroDebian Team Uploaders: Robert Pröpper , Michael Hanke , Yaroslav Halchenko , Build-Depends: debhelper (>= 7.2.18), python-all (>= 2.7), python-neo (>= 0.2.1), python-setuptools, python-nose, python-scipy, python-mock, python-sphinx, python-guidata, python-guiqwt, python-tables, python-sklearn (>= 0.11), python-joblib (>= 0.4.5), Standards-Version: 3.9.5 Homepage: https://github.com/rproepp/spykeutils Vcs-Browser: https://github.com/rproepp/spykeutils Vcs-Git: git://github.com/rproepp/spykeutils.git X-Python-Version: >= 2.7 Package: python-spykeutils Architecture: all Depends: ${misc:Depends}, ${python:Depends}, python-neo (>= 0.2.1), python-nose, python-scipy, python-sphinx Recommends: python-guidata, python-guiqwt, python-tables, libjs-jquery, libjs-underscore, python-sklearn (>= 0.11), python-joblib (>= 0.4.5), Provides: ${python:Provides} Description: utilities for analyzing electrophysiological data spykeutils is a Python library for analyzing and plotting data from neurophysiological recordings. It can be used by itself or in conjunction with Spyke Viewer, a multi-platform GUI application for navigating electrophysiological datasets. debian/spykeplugin.10000644000000000000000000000140112262547774011636 0ustar .TH spyke-plugin 1 "January 2013" Linux "USER MANUAL" .SH NAME spyke\-plugin \- start a spyke plugin .SH SYNOPSIS .B spyke\-plugin [\-c path] [\-cf] [\-sf] Classname Code Selection .SH DESCRIPTION Start a plugin from spykeutils or Spyke Viewer through the command line. Accepts name of the plugin class, python code declaring the class and a JSON string with the selection that the plugin should process. .SH OPTIONS .TP \-c, \-\-config Pickled configuration file of analysis. If not specified, default configuration will be used. .TP \-cf, \-\-codefile Code represents a filename containing code (default: Code is a string containing code) .TP \-sf, \-\-selectionfile Selection represents a filename containing the serialized selection (default: Selection is a string)debian/python-spykeutils.docs0000644000000000000000000000001612262547774013610 0ustar doc/build/htmldebian/compat0000644000000000000000000000000212262547774010404 0ustar 7 debian/changelog0000644000000000000000000000170312262547774011061 0ustar spykeutils (0.4.1-1) unstable; urgency=low * Package upstream 0.4.1. -- Robert Pröpper Mon, 06 Jan 2014 14:30:06 +0100 spykeutils (0.4.0-1) unstable; urgency=low * Package upstream 0.4.0. -- Robert Pröpper Thu, 15 Aug 2013 19:22:54 +0100 spykeutils (0.3.0-1) unstable; urgency=low * Package upstream 0.3.0. -- Robert Pröpper Wed, 24 Apr 2013 18:24:19 +0100 spykeutils (0.2.1-1) experimental; urgency=low * Package upstream 0.2.1. -- Robert Pröpper Fri, 25 Jan 2013 15:23:12 +0100 spykeutils (0.2.0-1) experimental; urgency=low * Initial public release (Closes: #687726). -- Robert Pröpper Fri, 04 Jan 2013 17:47:09 +0100 spykeutils (0.1.0+git8-g4c21317-1) unstable; urgency=low * Initial packaging. -- Yaroslav Halchenko Sat, 15 Sep 2012 09:07:33 -0400 debian/source/0000755000000000000000000000000012262547774010506 5ustar debian/source/format0000644000000000000000000000001412262547774011714 0ustar 3.0 (quilt) debian/python-spykeutils.links0000644000000000000000000000030512262547774014001 0ustar usr/share/javascript/jquery/jquery.js usr/share/doc/python-spykeutils/html/_static/jquery.js usr/share/javascript/underscore/underscore.js usr/share/doc/python-spykeutils/html/_static/underscore.jsdebian/rules0000755000000000000000000000237412262547774010274 0ustar #!/usr/bin/make -f # -*- mode: makefile; coding: utf-8 -*- # Prevent setup.py from downloading export http_proxy = http://127.0.9.1:9 # one rule to rule them all ... %: dh $@ --buildsystem=python_distutils --with python2 override_dh_auto_build: dh_auto_build # and docs $(MAKE) -C doc html # but remove jquery copy (later on link to Debian's version) -rm doc/build/html/_static/jquery.js -rm doc/build/html/_static/underscore.js # objects inventory is of no use for the package -rm doc/build/html/objects.inv : # also doc source files only consume space -rm -r doc/build/html/_sources override_dh_installchangelogs: dh_installchangelogs CHANGELOG.rst # enable when we believe that the tests should pass override_dh_auto_test: ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) set -e; for buildver in $(shell pyversions -vr); do \ echo "I: Running spykeutils unittests using python$$buildver"; \ python$$buildver /usr/bin/nosetests spykeutils || exit 1 ;\ done endif ## immediately useable documentation ## and exemplar data (they are small excerpts anyway) override_dh_compress: dh_compress -X.py -X.html -X.css -X.jpg -X.txt -X.js -X.json -X.rtc -X.par -X.bin override_dh_auto_clean: dh_auto_clean -rm -rf doc/build build -rm -rf spykeutils.egg-infodebian/python-spykeutils.doc-base0000644000000000000000000000054212262547774014341 0ustar Document: python-spykeutils Title: spykeutils documentation Author: Robert Pröpper Abstract: Documentation of spykeutils, a Python toolset for electrophysiological data analysis Section: Science/Data Analysis Format: HTML Index: /usr/share/doc/python-spykeutils/html/index.html Files: /usr/share/doc/python-spykeutils/html/*debian/gbp.conf0000644000000000000000000000036212262547774010626 0ustar [DEFAULT] # the default branch for upstream sources: upstream-branch = origin/master # the default branch for the debian patch: debian-branch = debian # the default tag formats used: upstream-tag = %(version)s debian-tag = debian/%(version)s debian/python-spykeutils.manpages0000644000000000000000000000002412262547774014452 0ustar debian/spykeplugin.1debian/watch0000644000000000000000000000026612262547774010243 0ustar # Compulsory line, this is a version 3 file version=3 opts="filenamemangle=s/.*\/(.*)/spykeutils-$1/" \ http://github.com/rproepp/spykeutils/tags .*archive/(\d[\d\.a-z]+)\.tar\.gz