debian/0000755000000000000000000000000012206745266007200 5ustar debian/copyright0000644000000000000000000000413411365646565011144 0ustar This package was debianized by Egon Willighagen on Sun, 14 Jan 2007 10:35:39 +0100. It is currently maintained by the debichem team . The orig.tar.gz was downloaded from http://downloads.sourceforge.net/bodr/. Upstream Authors: Geoff Hutchinson Carsten Niehaus Egon Willighagen Joerg Buchwald Martin Pfeiffer All the XSLT bibtexml-xslt/*.xsl files are downloaded from http://bibtexml.sf.net and licensed with the GPL 2.0 (see /usr/share/common-licenses/GPL-2.0). Copyright: Copyright (C) 2006 Vidar Bronken Gundersen, Zeger W. Hendrikse (http://bibtexml.sf.net) All other files have the Copyright with the upstream Blue Obelisk authors: Copyright (C) 2006-2010 The Blue Obelisk Project (http://www.blueobelisk.org/). License: The MIT License Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. The Debian packaging is Copyright (C) 2007 Egon Willighagen Copyright (C) 2007-2010 The debichem team and is licensed under the GPL, see `/usr/share/common-licenses/GPL'. debian/bodr.docs0000644000000000000000000000000510762314075010766 0ustar TODO debian/source/0000755000000000000000000000000012206745266010500 5ustar debian/source/format0000644000000000000000000000001412206745245011703 0ustar 3.0 (quilt) debian/rules0000755000000000000000000000062612206745245010261 0ustar #!/usr/bin/make -f # -*- makefile -*- # Uncomment this to turn on verbose mode. #export DH_VERBOSE=1 %: dh $@ --parallel override_dh_auto_install: dh_auto_install $(RM) $(CURDIR)/debian/bodr/usr/share/doc/bodr/ChangeLog \ $(CURDIR)/debian/bodr/usr/share/doc/bodr/COPYING override_dh_installchangelogs: dh_installchangelogs NEWS override_dh_auto_test: # do nothing to fix FTBFS with bodr 9 debian/watch0000644000000000000000000000012010632150552010207 0ustar # See uscan(1) for format version=3 http://sf.net/bodr/bodr-([\d\.]+)\.tar\.gz debian/upstream0000644000000000000000000000437111776046744010776 0ustar Name: Blue Obelisk Data Repository Homepage: http://bodr.sourceforge.net Contact: blueobelisk-discuss@lists.sourceforge.net Reference: - Author: Peter Murray-Rust Title: "The Blue Obelisk" Journal: CDK News Year: 2005 Volume: 2 Number: 2 Pages: 43-46 eprint: http://iweb.dl.sourceforge.net/project/cdk/CDK%20News/2_2/cdknews2.2.pdf - Author: Rajarshi Guha and Michael T. Howard and Geoffrey R. Hutchison and Peter Murray-Rust and Henry Rzepa and Christoph Steinbeck and Jörg Wegner and Egon L. Willighagen Title: "The Blue ObeliskInteroperability in Chemical Informatics" Journal: J. Chem. Inf. Model. Year: 2006 Volume: 46 Number: 3 Pages: 991-998 URL: http://pubs.acs.org/doi/abs/10.1021/ci050400b eprint: http://pubs.acs.org/doi/pdf/10.1021/ci050400b DOI: 10.1021/ci050400b - Author: Peter Murray-Rust Title: "Chemistry for everyone" Journal: Nature Year: 2008 Volume: 451 Pages: 648-651 URL: http://www.nature.com/nature/journal/v451/n7179/full/451648a.html eprint: http://www.nature.com/nature/journal/v451/n7179/pdf/451648a.pdf DOI: 10.1038/451648a - Author: Noel M. O'Boyle and Rajarshi Guha and Egon L. Willighagen and Samuel E. Adams and Jonathan Alvarsson and Jean-Claude Bradley and Igor V. Filippov and Robert M. Hanson and Marcus D. Hanwell and Geoffrey R. Hutchison and Craig A. James and Nina Jeliazkova and Andrew SID Lang and Karol M. Langner and David C. Lonie and Daniel M. Lowe and Jérôme Pansanel and Dmitry Pavlov and Ola Spjuth and Christoph Steinbeck and Adam L. Tenderholt and Kevin J. Theisen and Peter Murray-Rust Title: "Open Data, Open Source and Open Standards in chemistry: The Blue Obelisk five years on" Journal: J. Cheminf. Year: 2011 Volume: 37 Number: 3 Pages: 1-16 URL: http://www.jcheminf.com/content/3/1/37 eprint: http://www.jcheminf.com/content/pdf/1758-2946-3-37.pdf DOI: 10.1186/1758-2946-3-37 - Author: Noel M. O'Boyle and Peter Murray-Rust Title: "The Blue Obelisk community" Year: 2011 URL: http://www.dspace.cam.ac.uk/handle/1810/238402 eprint: http://www.dspace.cam.ac.uk/bitstream/1810/238402/1/Blue_Obelisk_Poster.pdf Repository: https://bodr.svn.sourceforge.net/svnroot/bodr/ Repository-Browse: http://bodr.svn.sourceforge.net debian/changelog0000644000000000000000000001061312206745262011047 0ustar bodr (10-1) unstable; urgency=low * New upstream release. * debian/control (Standards-Version): Bumped to recent 3.9.4. (Vcs-Browser, Vcs-Svn): Fixed vcs-field-not-canonical. (DM-Upload-Allowed): Dropped. * debian/rules: Enabled parallel building. * debian/upstream: Added. * debian/source/format: Added for 3.0 format. -- Daniel Leidert Mon, 26 Aug 2013 23:37:46 +0200 bodr (9-1) unstable; urgency=low * New upstream release 9. * debian/compat: Bumped to dh level 7. * debian/control (Standards-Version): Bumped to 3.8.4. (Uploaders): Removed Egon Willighagen. Thanks for your work! (Build-Depends): Increased debhelper version. (Depends): Fixed debhelper-but-no-misc-depends. * debian/copyright: Fixed copyright-with-old-dh-make-debian-copyright. Updated. * debian/rules: Rewritten for debhelper 7. -- Daniel Leidert (dale) Tue, 27 Apr 2010 23:05:14 +0200 bodr (8-1) unstable; urgency=low * New upstream release 8. -- Daniel Leidert (dale) Sun, 02 Mar 2008 14:51:19 +0100 bodr (7-1) unstable; urgency=low * New upstream release 7. [ Daniel Leidert ] * debian/bodr.docs: Removed files automatically installed by the install target. * debian/control (Build-Depends): Removed dpatch. (XS-DM-Upload-Allowed): Removed XS- prefix as of dpkg version 1.14.16. * debian/copyright: Small improvements. Fixed bibtexml-xslt license information. * debian/rules: Removed dpatch stuff. (install): Remove files we don't want in the documentation-directory. * debian/patches/90_dont_install_changelog_and_license_twice.dpatch: Removed. We can solve this without a patch in debian/rules. * debian/patches/00list: Removed. dpatch is not necessary atm. -- Daniel Leidert (dale) Sat, 01 Mar 2008 19:06:13 +0100 bodr (6-3) unstable; urgency=low * debian/control: Added XS-DM-Upload-Allowed for DM status. -- Daniel Leidert (dale) Mon, 07 Jan 2008 21:40:53 +0100 bodr (6-2) UNRELEASED; urgency=low [ Daniel Leidert ] * debian/control: Homepage and Vcs fields transition. (Maintainer): Set the debichem team as maintainer. (Standards-Version): Updated to latest version (no other changes). (Description): Slightly improved wording. * debian/rules (binary-indep): Removed useless debhelper script calls. * debian/watch: Updated. [ LI Daobing ] * debian/rules: lintian doesn't like "-$(MAKE) clean", see bug#325372 -- Daniel Leidert (dale) Tue, 18 Dec 2007 00:14:04 +0100 bodr (6-1) unstable; urgency=low * New upstream release 6. - Solves unclear copyright statements in elements/*.txt. [ Egon Willighagen ] * debian/copyright: Added missing copyright and license information for the bibtexml-xslt/*.xsl files. [ Daniel Leidert ] * debian/control: Added the XS-Vcs-Browser and XS-Vcs-Svn fields. (Uploaders): Added myself. * debian/copyright: Fixed download location. * debian/watch: Added watch file. -- Egon Willighagen Sat, 10 Mar 2007 18:32:50 +0100 bodr (5-2) unstable; urgency=low [ Egon Willighagen ] * debian/control: Fixed homepage format in description. (Architecture): Package is architecture independent. (Build-Depends, Build-Depends-Indep): Adjusted build-dependencies. Removed autotools-dev dependency. * debian/copyright: Added missing information - full authors list and the MIT license text. * debian/rules: Cleaned the file by removing commented and unused stuff. Removed stuff related to compiling a program (we don't have to compile anything). Fixed binary-arch/binary-indep targts according to changes in debian/control. * debian/dirs: Removed (unused). [ Daniel Leidert ] * debian/control (Build-Depends-Indep): Added dpatch. (Uploaders): Added Michael Banck as sponsor. * debian/rules: Added dpatch includes and targets. * debian/patches/00list: Added. * debian/patches/90_dont_install_changelog_and_license_twice.dpatch: Added. - Makefile.in (docs_DATA): Do not install the files mentioned in docs_DATA, because we install these files separately. -- Egon Willighagen Wed, 17 Jan 2007 16:20:51 +0100 bodr (5-1) unstable; urgency=low * Initial release -- Egon Willighagen Sun, 14 Jan 2007 10:35:39 +0100 debian/control0000644000000000000000000000131512206745245010600 0ustar Source: bodr Section: science Priority: optional Maintainer: Debichem Team Uploaders: Michael Banck , Daniel Leidert Build-Depends: debhelper (>= 7.0.50~) Build-Depends-Indep: xsltproc Standards-Version: 3.9.4 Homepage: http://www.blueobelisk.org/ Vcs-Browser: http://anonscm.debian.org/viewvc/debichem/unstable/bodr/ Vcs-Svn: svn://anonscm.debian.org/debichem/unstable/bodr/ Package: bodr Architecture: all Depends: ${misc:Depends} Description: Blue Obelisk Data Repository Common repository of chemical and physical facts that aim to increase interoperability between chemistry programs. . See DOI 10.1021/ci050400b. debian/compat0000644000000000000000000000000211365646565010405 0ustar 7