debian/0000755000000000000000000000000012241170453007165 5ustar debian/compat0000644000000000000000000000000211770370625010374 0ustar 7 debian/docs0000644000000000000000000000002611770370625010047 0ustar README.txt README.txt debian/python-nitime-doc.links0000644000000000000000000000013511770370625013606 0ustar usr/share/javascript/jquery/jquery.js usr/share/doc/python-nitime-doc/html/_static/jquery.js debian/rules0000755000000000000000000000335211770370625010261 0ustar #!/usr/bin/make -f # -*- makefile -*- PACKAGE_NAME = python-nitime PACKAGE_ROOT_DIR = debian/${PACKAGE_NAME} INSTALL_PATH = $(CURDIR)/debian/tmp # default Python PYTHON=$(shell pyversions -d) # override matplotlib config directory export MPLCONFIGDIR=$(CURDIR)/build export HOME=$(CURDIR)/build %: dh $@ override_dh_auto_test: : # Do not test just after build, lets install and then test override_dh_auto_install: dh_auto_install mkdir -p $(MPLCONFIGDIR) # just in case echo "backend : Agg" >| $(MPLCONFIGDIR)/matplotlibrc : # Prune duplicate LICENSE file find debian/ -name LICENSE -delete : # Only now lets build docs ifeq (,$(filter nodoc,$(DEB_BUILD_OPTIONS))) export PYTHONPATH=$$(/bin/ls -d $(INSTALL_PATH)/usr/lib/$(PYTHON)/*-packages); \ $(MAKE) -C doc html -rm doc/_build/html/_static/jquery.js -rm -r doc/_build/html/_sources : # objects inventory is of no use for the package -rm doc/_build/html/objects.inv endif # All tests later on # cd build to prevent use of local/not-built source tree ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) cd build; \ for PYTHON in $(shell pyversions -r); do \ echo "I: Running NiTime unittests using $$PYTHON"; \ PYTHONPATH=$$(/bin/ls -d $(INSTALL_PATH)/usr/lib/$$PYTHON/*-packages) \ MPLCONFIGDIR=/tmp/ \ $$PYTHON /usr/bin/nosetests --exclude=test_lazy_reload nitime; \ done endif ## immediately useable documentation ## and exemplar data (they are small excerpts anyway) override_dh_compress: dh_compress -X.py -X.html -X.css -X.jpg -X.txt -X.js -X.json -X.rtc -X.par -X.bin override_dh_clean: dh_clean @echo "I: Removing other generated material" rm -rf build doc/_build doc/examples/fig doc/api/generated/ doc/examples/*rst get-orig-source: -uscan --upstream-version 0 --rename debian/python-nitime.install0000644000000000000000000000002611770370625013370 0ustar debian/tmp/usr/* usr/ debian/python-nitime-doc.docs0000644000000000000000000000002011770370625013407 0ustar doc/_build/html debian/gbp.conf0000644000000000000000000000066411770370625010623 0ustar [DEFAULT] upstream-branch = master debian-branch = debian upstream-tag = %(version)s debian-tag = debian/%(version)s # Options only affecting git-buildpackage [git-buildpackage] # ignore some any non-gitted files ignore-new = True #upstream-branch = dfsgclean # uncomment this to automatically GPG sign tags sign-tags = True # use this for more svn-buildpackage like bahaviour: export-dir = ../build-area/ tarball-dir = ../tarballs/ debian/watch0000644000000000000000000000023411770370625010226 0ustar version=3 opts="filenamemangle=s/.*\/(.*)/nitime-$1\.tar\.gz/,uversionmangle=s/rc/~rc/g" \ https://github.com/nipy/nitime/tags .*tarball/rel/([\d\.a-z]+) debian/changelog0000644000000000000000000000513712241170452011044 0ustar nitime (0.4-2ubuntu1) trusty; urgency=low * Add a patch (sphinx_inheritance_diagram.diff) to fix FTBFS with Sphinx 1.2 (closes: #706533). -- Dmitry Shachnev Thu, 14 Nov 2013 19:47:53 +0400 nitime (0.4-2) unstable; urgency=low * Added graphviz to Build-Depends (Closes: #608908) Sorry that I have missed in -1 upload * Adding additional cleaning to assure pristine state for source package rebuilding (Closes: #643226, original report was about version.py being modified -- seems to be not the case any longer) -- Yaroslav Halchenko Wed, 20 Jun 2012 09:01:35 -0400 nitime (0.4-1) unstable; urgency=low * New upstream release - fix commit for lazyimports pickling - compatible with scipy 0.10 API breakage (Closes: #671978) * debian/control: - added XS-Python-Version >= 2.6 (for squeeze backports) - reindented/untabified *Depends - boosted policy compliance to 3.9.3 (no further changes) - upcased Depends in ${python:Depends}. Hopefully finally it (Closes: #614220) * debian/copyright: - updated years and fixed for DEP5 compliance * debian/rules - disable test_lazy_reload test (known to fail whenever ran by nosetest) - export HOME=$(CURDIR)/build just to avoid possible FTBFs * debian/watch - adjusted to fetch from tags -- Yaroslav Halchenko Wed, 06 Jun 2012 16:04:24 -0400 nitime (0.3.1-1) unstable; urgency=low * Fresh bugfix release: addresses compatibility concerns allowing easy backporting * CP commit to fixup __version__ to report 0.3.1 instead of 0.4.dev -- Yaroslav Halchenko Wed, 17 Aug 2011 17:35:17 -0400 nitime (0.3-1) UNRELEASED; urgency=low * Fresh upstream release * Adjusted debian/watch and added a rudimentary get-orig-source which uses uscan to fetch tarballs from github -- Yaroslav Halchenko Mon, 15 Aug 2011 16:29:48 -0400 nitime (0.2.99-1) unstable; urgency=low * Pre-0.3 snapshot release * Boost policy compliance to 3.9.2 (no changes due) * Assure off-screen backend (Agg) for matplotlib while building docs -- Yaroslav Halchenko Sun, 29 May 2011 21:48:41 -0400 nitime (0.2-2) unstable; urgency=low * Proper casing in ${python:depends} (Closes: #614220). Thanks Jakub Wilk for the report and for the fix -- Yaroslav Halchenko Sun, 20 Feb 2011 09:40:41 -0500 nitime (0.2-1) unstable; urgency=low * Initial release (Closes: #600714) -- Yaroslav Halchenko Fri, 22 Oct 2010 14:32:15 -0400 debian/copyright0000644000000000000000000000374511770370625011142 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: nitime Upstream-Contact: nipy-devel@neuroimaging.scipy.org Source: http://github.com/nipy/nitime Files: * Copyright: 2006-2012, NIPY Developers License: BSD-3 Files: doc/sphinxext/* Copyright: 2007-2009, Stefan van der Walt and Sphinx team License: BSD-3 Files: nitime/tests/decotest.py Copyright: 2009, The IPython Development Team License: BSD-3 Files: debian/* Copyright: 2010-2012, Yaroslav Halchenko License: BSD-3 License: BSD-3 Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. * Neither the name of the NIPY Developers nor the names of any contributors may be used to endorse or promote products derived from this software without specific prior written permission. . THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. debian/source/0000755000000000000000000000000011770370625010476 5ustar debian/source/format0000644000000000000000000000001411770370625011704 0ustar 3.0 (quilt) debian/patches/0000755000000000000000000000000012241167674010627 5ustar debian/patches/sphinx_inheritance_diagram.diff0000644000000000000000000000104212241170242017005 0ustar Description: use inheritance_diagram from Sphinx, fixes FTBFS with Sphinx 1.2 Origin: upstream, https://github.com/nipy/nitime/commit/d9004946ea8f Last-Update: 2013-11-14 --- a/doc/conf.py +++ b/doc/conf.py @@ -75,7 +75,7 @@ 'sphinx.ext.todo', 'sphinx.ext.pngmath', 'numpydoc', - 'inheritance_diagram', + 'sphinx.ext.inheritance_diagram', 'ipython_console_highlighting', 'only_directives', 'math_dollar', # Support for $x$ math debian/patches/deb_no_sources_for_docs0000644000000000000000000000054411770370625015422 0ustar --- a/doc/conf.py +++ b/doc/conf.py @@ -131,6 +131,9 @@ today_fmt = '%B %d, %Y, %H:%M PDT' # for source files. exclude_trees = ['_build'] +# If true, the reST sources are included in the HTML build as _sources/. +html_copy_source = False + # The reST default role (used for this markup: `text`) to use for all documents. #default_role = None debian/patches/series0000644000000000000000000000007012241167704012033 0ustar deb_no_sources_for_docs sphinx_inheritance_diagram.diff debian/python-nitime-doc.doc-base0000644000000000000000000000045511770370625014150 0ustar Document: nitime Title: NiTime Manual Author: NiPy Developers Abstract: This manual provides Nitime user guide, examples, and developers reference. Section: Science/Data Analysis Format: HTML Index: /usr/share/doc/python-nitime-doc/html/index.html Files: /usr/share/doc/python-nitime-doc/html/*.html debian/control0000644000000000000000000000353012241170465010574 0ustar Source: nitime Section: python Priority: extra Maintainer: Ubuntu Developers XSBC-Original-Maintainer: NeuroDebian Team Uploaders: Yaroslav Halchenko , Michael Hanke Build-Depends: debhelper (>= 7.0.50~), python-all, python-support, python-numpy, python-scipy, python-matplotlib, python-tk, python-sphinx, python-nose, python-networkx, python-nibabel, graphviz, Standards-Version: 3.9.3 XS-Python-Version: >= 2.6 Homepage: http://nipy.org/nitime Vcs-Git: git://github.com/yarikoptic/nitime.git Vcs-Browser: http://github.com/yarikoptic/nitime Package: python-nitime Architecture: all Depends: ${python:Depends}, ${shlibs:Depends}, ${misc:Depends}, python-numpy, python-scipy Recommends: python-matplotlib, python-nose, python-nibabel, python-networkx Description: timeseries analysis for neuroscience data (nitime) Nitime is a Python module for time-series analysis of data from neuroscience experiments. It contains a core of numerical algorithms for time-series analysis both in the time and spectral domains, a set of container objects to represent time-series, and auxiliary objects that expose a high level interface to the numerical machinery and make common analysis tasks easy to express with compact and semantically clear code. Package: python-nitime-doc Architecture: all Section: doc Depends: ${misc:Depends}, libjs-jquery Suggests: python-nitime Description: timeseries analysis for neuroscience data (nitime) -- documentation Nitime is a Python module for time-series analysis of data from neuroscience experiments. . This package provides the documentation in HTML format. debian/blends0000644000000000000000000000035111770370625010367 0ustar Format: extended Tasks: debian-med/imaging-dev Depends: python-nitime Language: Python Tasks: debian-med/imaging Recommends: python-nitime Why: Although listed in -dev task, it also has a strong focus on interactive data analysis.